BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans
isomerase D signal peptide protein [Candidatus Liberibacter asiaticus
str. psy62]
         (631 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040835|gb|ACT57631.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 631

 Score = 1286 bits (3327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/631 (100%), Positives = 631/631 (100%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW
Sbjct: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA
Sbjct: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD
Sbjct: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH
Sbjct: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA
Sbjct: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF
Sbjct: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF
Sbjct: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE
Sbjct: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE
Sbjct: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
           NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK
Sbjct: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600

Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
           DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK
Sbjct: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631


>gi|315122544|ref|YP_004063033.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495946|gb|ADR52545.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 632

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/633 (59%), Positives = 486/633 (76%), Gaps = 3/633 (0%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLEIIRKASRTWVAKIFLVVLFVPF++WG+SDA FS SG STVVSVG QK+P S+FI  W
Sbjct: 1   MLEIIRKASRTWVAKIFLVVLFVPFIVWGVSDAFFSFSGKSTVVSVGNQKIPLSAFIQIW 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            QEL  +S++IGF V  ERARS  LDKKI ++LV+GA +DQFIED GLEA   RV+  I 
Sbjct: 61  TQELDALSRQIGFAVPPERARSAELDKKITEHLVAGAAIDQFIEDTGLEAPDSRVFEFIG 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P+F+GKD KFSH+VF+S+LA+EG++EKEY++ Y KM+SR+D+  MF+GG + S  L +
Sbjct: 121 SQPIFYGKDGKFSHEVFLSKLAQEGVSEKEYVETYKKMISRSDIAEMFIGGDKSSRFLAE 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R Y ENR+++Y+VLN   VPA+ DP+  VL +WF K+K NYRAPEYK  SYI  DV+
Sbjct: 181 QMMRHYSENRTIEYVVLNAHDVPAVVDPAPVVLAEWFAKFKGNYRAPEYKSFSYIALDVN 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EKEK + ++  EL++EYEKNK +YFSPEIRTVEQLVFPNQKEA+EA +SLKKGKKFIQLA
Sbjct: 241 EKEKNVVVTESELRSEYEKNKNQYFSPEIRTVEQLVFPNQKEAEEALKSLKKGKKFIQLA 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +E+GKSLSDISLGSFSKEYIPD SLAD IF+LAK+GD+T +IHGSFGYVIAHVS IKPSF
Sbjct: 301 KEKGKSLSDISLGSFSKEYIPDPSLADPIFALAKEGDYTSLIHGSFGYVIAHVSRIKPSF 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T  F+++KK I +++R+ KAS+ V E+YK+ ++ L+ G +M +I+ +EK    DLP +++
Sbjct: 361 TTPFEQIKKSIEHKVRLAKASQVVLEEYKKAQDLLSSGKTMKDIATKEKFSFGDLPPLNY 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D+K + V  IPYK+ LL R+F ++D L  D+T+ LPDGSY+  ++KE IPARDRKLE
Sbjct: 421 LGMDMKNRPVQKIPYKDHLLSRIFNQEDALVTDNTIQLPDGSYVIFKVKEVIPARDRKLE 480

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM--D 538
           EVLT+VKKDWK+++  E V +KA  LVL  +K GK+F D+  +L   +   + I RM  +
Sbjct: 481 EVLTEVKKDWKSIQQTEAVLNKAQNLVLACNK-GKSFADMASSLRKFISVKSNITRMTKE 539

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
           +E      DGIS+VFSGPV MVK FPI+NG   VVFKV  SK+ P+ +K KFI  L +M+
Sbjct: 540 SEEGILENDGISRVFSGPVGMVKSFPIKNGAEQVVFKVVRSKINPMDDKKKFILSLEKMI 599

Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
            KD+LDS IAYL+ QY V V+++LI +Y D  K
Sbjct: 600 GKDMLDSSIAYLRQQYPVYVNESLITKYFDQNK 632


>gi|241204737|ref|YP_002975833.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858627|gb|ACS56294.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 630

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/635 (33%), Positives = 364/635 (57%), Gaps = 19/635 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M  I+R+A++TWVAK+ L++L V F  WG+S  L +   S+TVV+VG Q V  + F  ++
Sbjct: 1   MFHILRRAAQTWVAKLLLLLLVVSFGAWGVSHQLLTGGNSTTVVTVGDQHVDVNEFHLAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +SQ+ G  +  E+AR+ G+++++L  LV+GA+LDQ  ED+ L     R+   IA
Sbjct: 61  QRQVANLSQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F  ++F+SRL    I + +YI   +K+  R+ VV     G      L+D
Sbjct: 121 DDPAFKAVNGRFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+RS+DY++L N ++  I  P++ VL  WFE  K  YRAPEY++++Y+     
Sbjct: 181 ALKLYGDESRSIDYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKLAYLKLQPA 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D++   ++K+K+ Y +PE RT+EQL F ++  A  A  +LK G  F QL 
Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFASKDLATAAETALKSGTSFDQLV 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ SD+ LG F+K+ +PD ++AD+ F++++ G  TPV+ GSFG VI  V+NIK   
Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSRDGGTTPVVDGSFGSVILRVTNIKSET 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             +F EVK+DI  Q+ ++ AS++V   + R+E+  A G+++++I+ + K+ ++ +  VD 
Sbjct: 361 AKNFDEVKEDIRKQLSLSNASQEVINVHDRIEDLRAGGSTLEDIAGQLKLKAVTVDAVDM 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGS--YMWVQIKESIPA 474
            G D  G+EV  IP K+QLL   F    G D P        LP G+  Y+W  ++E  P 
Sbjct: 421 TGADKDGQEVKDIPVKQQLLGEAFKTEVGVDAP-------PLPIGNDGYVWFNVREITPD 473

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           RDR + EV     +DW   +   E++ KA+ L  E +K+G    DI   LG ++ + + +
Sbjct: 474 RDRPVAEVREKAVEDWTAEQQKAELAKKADALKAE-AKKGTALADIATPLGIAVESKSGV 532

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
            R   ++   G  G++  FSGP++ V      +  + ++ KVT     P    +  +D  
Sbjct: 533 TR-STDDAVLGRAGVTAAFSGPLDTVASAVGADPSTQILMKVTEVNTQPTGDVLNNRDAQ 591

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           I+ +      D+LD ++  L++QY   ++  L ++
Sbjct: 592 ITAMANAAGDDILDQMVNLLQTQYGAEINHTLAEQ 626


>gi|86357790|ref|YP_469682.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CFN 42]
 gi|86281892|gb|ABC90955.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CFN 42]
          Length = 646

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/631 (33%), Positives = 362/631 (57%), Gaps = 11/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M  ++R+A++TWVAK+ L++L   F IWG+S  L S   S+TVV+VG QKV  + F  ++
Sbjct: 17  MFHLLRRAAQTWVAKLLLLLLVASFGIWGISRELISGGSSTTVVTVGDQKVGVTEFQLAY 76

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  I Q+ G  +  E+AR+ G+++++L  LV+GA+LDQ  ED+ L     R+   I 
Sbjct: 77  QRQVTSIGQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 136

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F  ++FVSRL   GI + +YI   +K+  R+ +V     G      L+D
Sbjct: 137 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLID 196

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+RS+DY++L N ++  I  P++ VL  WFE  K  YRAPEY+++ Y+     
Sbjct: 197 ALKLYGDESRSIDYLLLTNANIEPIKAPADDVLASWFEGVKQRYRAPEYRKLIYLKLQPA 256

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D+++  +EK K+ Y +PE RT+EQL F ++  A  A  +LK G  F QL 
Sbjct: 257 DIADAATVTDDQIREAFEKGKDSYRTPESRTIEQLTFASKDLATAAETALKGGTSFDQLL 316

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G  TPV+ GSFG VI  ++NIKP  
Sbjct: 317 TDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKPET 376

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             +F EVK+DI  Q+ ++ AS++V   + R+E+  A G+++++I+ + K+ ++ +  VD 
Sbjct: 377 VKNFDEVKEDIRKQLALSNASQEVINVHDRIEDMRAGGSTLEDIAGQLKLKAVTVDAVDA 436

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS--YMWVQIKESIPARDRK 478
            G D  GKEV  +P K+QLL   F  +  +  D +  LP G+  Y+W  ++E  P RDR 
Sbjct: 437 TGVDKDGKEVKDLPAKQQLLGEAFKTE--VGVDAS-PLPIGNDGYVWFNVREITPDRDRP 493

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
           + EV     +DW   +   E++ KA +L  +  K G    DI   LG ++ + + I R  
Sbjct: 494 IAEVREKAVEDWTAEQQKAELAKKAEELKAQAQK-GAALADIAAPLGIAVESKSGITR-S 551

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYL 594
            ++   G   +   FSGPV+ V      +  + ++ KVT     P  +    +D  ++ +
Sbjct: 552 TDDPVLGRAAVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTSDVLNNRDAQLTAM 611

Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
                 D+LD ++  L++QY  +++  L ++
Sbjct: 612 ANAAGDDILDQMVNLLQTQYGASINQTLAEQ 642


>gi|116252238|ref|YP_768076.1| peptidyl-prolyl cis-trans isomerase D [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256886|emb|CAK07980.1| putative peptidyl-prolyl cis-trans isomerase D [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 630

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/635 (33%), Positives = 363/635 (57%), Gaps = 19/635 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M  I+R+A++TWVAK+ L++L   F +WG+S  L S   S+TVV+VG Q V  + F  ++
Sbjct: 1   MFHILRRAAQTWVAKLLLLLLVASFGVWGVSHELLSGGNSTTVVTVGDQHVDVNEFHLAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +SQ+ G  +  E+AR+ G+++++L  LV+GA+LDQ  ED+ L     R+   IA
Sbjct: 61  QRQVANLSQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F  ++F+SRL   GI + +YI   +K+  R+ VV     G      L+D
Sbjct: 121 DDPAFKAVNGRFDRELFISRLQNAGIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+RSV+Y++L N ++  I  P++ VL  WFE  K  YRAPEY+++ Y+     
Sbjct: 181 ALKLYGDESRSVEYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKLVYLKLQPG 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D++   ++K+K+ Y +PE RT+EQL F ++  A  A  +LK G  F QL 
Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFASKDLAAAAETALKSGTSFDQLV 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ SD+ LG F+++ +PD ++AD+ F++++ G  TPV+ GSFG VI  V+NIK   
Sbjct: 301 SDQGKTASDVLLGEFTEDKVPDQAVADAAFAVSRDGGTTPVVDGSFGPVILRVTNIKSET 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             +F EVK+DI  Q+ ++ AS++V   + R+E+  A G+++++I+ +  + ++ +  VD 
Sbjct: 361 AKNFDEVKEDIRKQLALSNASQEVINVHDRIEDLRAGGSTLEDIAGQLNLKAMTVDAVDM 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGS--YMWVQIKESIPA 474
            G D  GKEV  IP K+QLL   F    G D P        LP G+  Y+W  ++E  P 
Sbjct: 421 TGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-------PLPIGNDGYVWFNVREITPD 473

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           RDR + EV     +DW   +   E++ KA+ L  E +K+G    DI   LG ++ + + +
Sbjct: 474 RDRPVTEVREKAVEDWTAEQQKAELAKKADALKAE-AKKGTALADIATPLGIAVESKSGV 532

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
            R   ++   G  G++  FSGPV+ V      +  + ++ KVT     P    +  +D  
Sbjct: 533 TR-STDDAVLGRAGVTAAFSGPVDTVASAVGADPSTQILLKVTEVNTQPTGDVLNNRDAQ 591

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           I+ +      D+LD ++  L++QY   ++  L ++
Sbjct: 592 ITAMANAAGDDILDQMVNLLQTQYGAQINQTLAEQ 626


>gi|209549414|ref|YP_002281331.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535170|gb|ACI55105.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 630

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/635 (33%), Positives = 362/635 (57%), Gaps = 19/635 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M  I+R+A++TWVAK+ +++L   F IWG+S +L + S S+TVV+VG Q V  + F  ++
Sbjct: 1   MFHILRRAAQTWVAKLLMLLLVASFGIWGVSRSLITGSNSTTVVTVGDQHVDVNEFHLAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  + Q+ G  +  E+AR+ G+++++L  LV+GA+LDQ  ED+ L     R+   IA
Sbjct: 61  QRQVASLGQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + KF  ++F+SRL    I + +YI   +K+  R+ VV     G      L+D
Sbjct: 121 DDPAFKAVNGKFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLID 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+RS+DY++L N ++  I  P++ VL  WF+  K  Y+APEY+++ Y+     
Sbjct: 181 ALKLYGNESRSIDYLLLTNANIEPIKAPADDVLAAWFDGVKQRYQAPEYRKLVYLSLQPA 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D++   ++K+K+ Y +PE RT+EQL F ++  A  A  +LK G  F QL 
Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFTSKDLAVAAETALKGGTSFDQLV 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G  TPV+ GSFG VI  ++NIKP  
Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVEGSFGSVILRITNIKPET 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T +F EVK+DI  Q+ ++ AS++V   + R+E+  A G ++++I+ + K+ ++ +  VD 
Sbjct: 361 TKNFDEVKEDIRKQLALSNASQEVINVHDRIEDLRAGGATLEDIAGQLKLKAVTVDAVDM 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGS--YMWVQIKESIPA 474
            G D  GKEV  IP K+QLL   F    G D P        LP G+  Y+W  ++E  P 
Sbjct: 421 TGADKDGKEVKDIPVKQQLLGEAFKTEVGVDAP-------PLPIGNDGYVWFNVREITPT 473

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           R+R + EV     +DW T +  +   +K  + +   + +G    DI   LG ++ + + +
Sbjct: 474 RERPVAEVREKAVEDW-TAEQQKAELAKKAEALKAEAAKGTALADIATPLGIAVESKSGV 532

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKF 590
            R   ++   G  G++  FSGPV+ V      +  + ++ KVT     P  +    +D  
Sbjct: 533 TRA-TDDPVLGRAGVTAAFSGPVDAVASAVGADPSTQILMKVTEVNSEPTSDALNNRDAQ 591

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           I+ +      D+LD ++  L++QY   ++  L ++
Sbjct: 592 ITAMANAAGDDILDQMVNLLQTQYGAQINQTLAEQ 626


>gi|190891851|ref|YP_001978393.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CIAT 652]
 gi|190697130|gb|ACE91215.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CIAT 652]
          Length = 630

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/635 (34%), Positives = 359/635 (56%), Gaps = 19/635 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   +R+A++TWVAK+ L++L   F IWG+S  L S   S+TVV+VG Q V  + F  ++
Sbjct: 1   MFHFLRRAAQTWVAKLLLLLLVASFGIWGVSRELISGGSSTTVVTVGDQHVGVNEFHLAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +SQ+ G  +  E+AR+ G+++++L  LV+GA+LDQ  ED+ L     R+   I 
Sbjct: 61  QRQVASLSQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F  ++FVSRL   GI + +YI   +K+  R+ +V     G      L+D
Sbjct: 121 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+RSVDY++L N ++  I  P++ VL  WFE  K  YRAPEY++I+Y+     
Sbjct: 181 ALKLYGDESRSVDYLLLTNANIEPIKAPADDVLAAWFEGVKQRYRAPEYRKIAYLKLQPA 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D+++  ++K K+ Y +PE RT+EQL F ++  A  A  +LK G  F QL 
Sbjct: 241 DIADAATVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLV 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G  TPV+ GSFG VI  ++NIK   
Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKAET 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T +F EVK +I  Q+ ++ AS++V   +  +E+  A G ++++I+ + K+ ++ +  VD 
Sbjct: 361 TKNFDEVKDEIRKQLALSNASQEVINVHDHIEDLRAGGATLEDIAGQLKLNAVTVDAVDA 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGS--YMWVQIKESIPA 474
            G D  GKEV  IP K+QLL   F    G D P        LP G+  Y+W  ++E  P 
Sbjct: 421 TGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-------PLPIGNDGYVWFNVREITPD 473

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           RDR + EV     +DW   +   E++ KA++L  E  K G    DI   LG ++ + + I
Sbjct: 474 RDRPIAEVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIATPLGIAVESKSGI 532

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
            R   ++   G  G+   FSGPV+ V      +  + ++ KVT     P    +  +D  
Sbjct: 533 TR-STDDPVLGRAGVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTGDVLNNRDAQ 591

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           ++ +      D+LD ++  L++QY   V+  L ++
Sbjct: 592 LTAMANAAGDDILDQMVNLLQTQYGAQVNQTLAEQ 626


>gi|327192898|gb|EGE59819.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CNPAF512]
          Length = 630

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/635 (34%), Positives = 361/635 (56%), Gaps = 19/635 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   +R+A++TWVAK+ L++L   F IWG+S  L S   S+TVV+VG Q V  + F  ++
Sbjct: 1   MFHFLRRAAQTWVAKLLLLLLVASFGIWGVSRELISGGSSTTVVTVGDQHVGVNEFHLAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +SQ+ G  +  E+AR+ G+++++L  LV+GA+LDQ  ED+ L     R+   I 
Sbjct: 61  QRQVASLSQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F  ++FVSRL   GI + +YI   +K+  R+ +V     G      L+D
Sbjct: 121 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+RSVDY++L N ++  I  P++ VL  WFE  K  YRAPEY++I+Y+     
Sbjct: 181 ALKLYGDESRSVDYLLLTNANIEPIKAPADDVLAAWFEGVKQRYRAPEYRKIAYLKLQPT 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D+++  ++K K+ Y +PE RT+EQL F ++  A  A  +L  G  F QL 
Sbjct: 241 DIADAATVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALNSGTSFDQLV 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G  T V+ GSFG VI  ++NIK   
Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTSVVDGSFGPVILRITNIKAET 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T +F EVK +I  Q+ ++ AS++V   + R+E+  A G ++++I+ + K+ ++ +  VD 
Sbjct: 361 TKNFDEVKDEIRKQLALSNASQEVINVHDRIEDLRAGGATLEDIAGQLKLNAVTVDAVDA 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGS--YMWVQIKESIPA 474
            G D  GKEV  IP K+QLL   F    G D P        LP G+  Y+W  ++E  P 
Sbjct: 421 TGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-------PLPIGNDGYVWFNVREITPD 473

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           RDR + EV     +DW   +   E++ KA++L  E  K G    DI   LG ++ + + I
Sbjct: 474 RDRPIAEVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIATPLGIAVESKSGI 532

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT--NSK-VGPV-QEKDKF 590
            R   ++   G  G+   FSGPV+ V      +  + ++ KVT  NS+  G V   +D  
Sbjct: 533 TR-STDDPVLGRAGVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQSTGDVLNNRDAQ 591

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           ++ +      D+LD ++  L++QY   V+  L ++
Sbjct: 592 LTAMANAAGDDILDQMVNLLQTQYGAQVNQTLAEQ 626


>gi|222086022|ref|YP_002544554.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Agrobacterium radiobacter K84]
 gi|221723470|gb|ACM26626.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Agrobacterium radiobacter K84]
          Length = 630

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/631 (32%), Positives = 348/631 (55%), Gaps = 7/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M +++RK ++TWVAK   V+L   F IWG+   + +   S+ VV+VG QK+  + F  ++
Sbjct: 1   MFDVLRKLAKTWVAKGIFVLLIAAFSIWGIESRMVTGGSSNAVVTVGDQKIDTNEFRLAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  ISQ++   +  E+AR+ G+ ++ +  LV+GA+LDQ   D+ L     R+   I 
Sbjct: 61  RRQIQAISQQLRMQITPEQARAFGIAQQTVAQLVAGASLDQLASDMNLGLSQDRLAQLIG 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   +  F    F S L    IN  +YI   +K+  R+ +V     G      L+D
Sbjct: 121 DDPAFKALNGTFDRQKFESLLRNSNINPDDYIKERSKVAVRSQIVEAVSNGFVAPKTLVD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K+++ E+RS+DY++L N ++  I  P++ VL++WF+  K  +RAPEY++ SY+     
Sbjct: 181 AVKQYHDESRSIDYLLLTNANIDPIKAPADDVLSKWFDGVKSKFRAPEYRKFSYVKLQAE 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D  +AE+EK K  + +P  RT+EQL F N+  A+ A  +LK G  F QL 
Sbjct: 241 DIADPASVTDDAARAEFEKRKNSFTTPATRTIEQLTFANKDLANAASDALKTGTTFDQLV 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK  +D+ LG+F+KE +PD +LA + F++AK+G  TPV+ GSFG VI  V+N+K   
Sbjct: 301 TDQGKKPADVLLGTFTKEQVPDQTLAQAAFAVAKEGGTTPVVDGSFGPVILRVTNVKDET 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             +F +VK+DI  Q+ +  A+  +   + + E+    G S+ E +++  + +I +  +D 
Sbjct: 361 AKNFDDVKEDIRKQIALNAAASDITSIHDKFEDLRGSGVSLQEAAQQLNLKAITVDAIDS 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  G E+  +P ++QLL  VF K D  S    + + +  Y+W  +    P RDR L 
Sbjct: 421 TGLDQAGNEIKDLPARQQLLGEVF-KADQGSNAAPLTVGNDGYVWYDVLGLTPDRDRPLA 479

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV      DW   +    +++KAN+L  E  K GK+  DI   LG ++ +   + R   +
Sbjct: 480 EVREKAVVDWTAEQQKIALAAKANELKQEAQK-GKSLADIATPLGIAVESKADVTRT-TD 537

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQ 596
           +   G  G++  FSGP++        +  + ++ KVT+    P  +    +D+  + +  
Sbjct: 538 DPVLGRAGVAAAFSGPIDTAANAIGADDTTQILLKVTDVNNNPTTDALSNQDQQATQIAN 597

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               D+LD ++A L+S+Y+VTV+ NL ++ +
Sbjct: 598 AAGDDILDQIVADLQSKYTVTVNQNLAEQAM 628


>gi|222148891|ref|YP_002549848.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4]
 gi|221735877|gb|ACM36840.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4]
          Length = 629

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 206/634 (32%), Positives = 345/634 (54%), Gaps = 14/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML I+RKA+ TWVAK  L++L   F IWG+S ++ S + S  V+ VG Q V  + F  ++
Sbjct: 1   MLVILRKAAGTWVAKGLLLLLVASFAIWGISSSIMSDT-SDKVIKVGSQSVNSNEFRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +S++ G  + SE+ARS+G++ ++   LV+GA LDQ   D+ L     R+   I 
Sbjct: 60  QRQISDLSRRFGTQLTSEQARSLGIESQVYQQLVAGAALDQLASDMNLGLSQDRLAQLIG 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F   +F SRL   GI E++YI   +K+  R+ +V     G  P  +L+D
Sbjct: 120 DDPAFKNTNGQFDRQLFTSRLRNSGIREQDYITERSKVAVRSQIVDATAEGFVPPKVLID 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+RS+DY++L   ++  I  P   VL  WF   K  YRAPEY+  SY+  +  
Sbjct: 180 ALKLYRQESRSIDYLLLTTANIDPIKAPDETVLKTWFNTMKSRYRAPEYRSFSYVKLEPA 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++++++ EY+ N +K+     RT+EQL FP ++ A+ A QSLK GK F QL 
Sbjct: 240 DIADPKAVTDEQVKQEYDANLKKFEVAGTRTLEQLTFPTKELAETAAQSLKNGKTFDQLV 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ +D+ LG F++  IPD  LAD+ F++AK  D TPV+ G+FG VI  VSNIKPS 
Sbjct: 300 ADQGKTATDVLLGDFTRADIPDQKLADAAFAVAKDSDTTPVVEGAFGPVILRVSNIKPSH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T +  EVK  I   +    A++++ + + R E+  A G+S++E + +  + +I +  +D 
Sbjct: 360 TKTLDEVKDQIRADLAANAAAQQINDVHDRFEDMRASGSSLEEAATKAGLKAIKIDGIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKD---DPLSKDHTVALPDGSYMWVQIKESIPARDR 477
            G+D  GK+   +P K  LL  VF  +   +PL     + +    Y+W  +     +R+R
Sbjct: 420 QGQDKTGKQAENLPEKANLLKSVFETEAGAEPLP----LNIGRNGYLWFDVTSIDASRER 475

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
            L+EV      DW T +  + + +K  QL  + +  G    D+   L   + T   + R 
Sbjct: 476 TLDEVKDKAVSDWTTEQQKQALGAKVEQLKAK-ADTGVALADLATELAIGVETKAGLRR- 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISY 593
           D E+   G   +   F GP   +      + ++ ++ KVT+    P    V +++  I+ 
Sbjct: 534 DTEDPVLGPAAVQAAFRGPSGTIGSAVGADPMTQILLKVTDVNTQPTGDVVDQQESQITA 593

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           L +    D+LD ++  L+++Y VT++  L Q+ +
Sbjct: 594 LAKSAGDDILDQMVNQLQTKYGVTINQALAQQAI 627


>gi|218675330|ref|ZP_03524999.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli GR56]
          Length = 579

 Score =  362 bits (930), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 197/566 (34%), Positives = 328/566 (57%), Gaps = 15/566 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   +R+A++TWVAK+ L++L   F +WG+S  L S   S+TVV+VG Q+V  + F  ++
Sbjct: 17  MFHFLRRAAQTWVAKLLLLLLVASFGVWGVSRELISGGNSTTVVTVGDQRVGVNEFHLAY 76

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  + Q+ G  +  E+AR+ G+++++L  L++GA+LDQ   D+ L     R+   I 
Sbjct: 77  QRQVASLGQQFGMRLTPEQARAFGVEQQVLSQLIAGASLDQLAADMNLGLSEDRLAQLIG 136

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F  ++FVSRL    I++ +YI   +K+  R+ +V     G      L+D
Sbjct: 137 DDPAFKAVNGQFDRELFVSRLRNANIHQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 196

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+R+VDY++L N ++  I  P++ VL  WFE  K  YRAPEY++I+Y+     
Sbjct: 197 AMKLYGDESRAVDYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKIAYLKLQPA 256

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D+++  ++K K+ Y +PE RT+EQL F ++  A  A  +LK G  F QL 
Sbjct: 257 DIADVASVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLV 316

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G  TPV+ GSFG VI  ++NIK   
Sbjct: 317 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKAET 376

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             +F EVK++I  Q+ ++ AS++V   + ++E+  A G ++++I+ + K+ ++ +  VD 
Sbjct: 377 VKNFDEVKEEIRKQLALSNASQEVINVHDQIEDLRAGGATLEDIAAQLKLKAMTVDAVDA 436

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGS--YMWVQIKESIPA 474
            G D  GKEV   P K+QLL   F    G D P        LP G+  Y+W  ++E  P 
Sbjct: 437 TGADKDGKEVKDTPVKQQLLGEAFKTEVGVDAP-------PLPIGNDGYVWFNVREITPD 489

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           RDR + EV     +DW   +   E++ KA++L  E  K G    DI   LG ++ + + I
Sbjct: 490 RDRPIAEVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIAAPLGIAVESKSSI 548

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMV 560
            R   ++   G  G+   FSGPV+ V
Sbjct: 549 TR-STDDAVLGRAGVKAAFSGPVDTV 573


>gi|15965412|ref|NP_385765.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium
           meliloti 1021]
 gi|15074593|emb|CAC46238.1| Putative peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           meliloti 1021]
          Length = 630

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 206/634 (32%), Positives = 352/634 (55%), Gaps = 14/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A++T V K  L +L + F++WG    L   +  + VV+VG  KV  S F  ++
Sbjct: 1   MLDSLRNAAQTRVVKGLLALLILSFMVWG-GQTLMVPNTPNAVVTVGDVKVSASDFRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++ ++S+++G  ++ ++A++ G++ ++   LV+GA LDQ   D+ L     R+   I 
Sbjct: 60  ERQVALLSRQLGTPLSRQQAQAFGVENQVYAQLVAGAALDQLATDMNLGLSEDRLARLIG 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FHG + +F    F S L   G+ E++YI++ +++  R+ +V     G     +L+D
Sbjct: 120 EDPAFHGANGQFDRLTFSSVLRNAGLTEQDYINNRSQVAVRSQIVDALTDGYTAPKVLVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              ++  E R++DY++L+N ++ A+  P + VL  WFE  K NYRAPEY++ISYI  +  
Sbjct: 180 AIGKYRHETRTIDYLLLSNANIDAVKTPGDDVLAPWFESRKANYRAPEYRKISYIKLEPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++++EL+A+YEK KE Y +P  RTVEQL FP+++ AD A   L  G  F  L 
Sbjct: 240 DLAAPDAVTSEELRADYEKRKESYRTPATRTVEQLTFPSREAADAAAAKLAAGTSFDDLV 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           + +GK+ +D+ LG F+KE +PD  +AD+ F++A+ G  TPV+ G+FG VI  V+NI+P  
Sbjct: 300 KAEGKTSADVLLGDFTKERMPDAKIADAAFAVAQDGGTTPVVEGAFGPVILRVTNIRPDA 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             SF EVK+++  ++ +  A E++   + ++E+  A G S+ EI+ + K+  + +  VD 
Sbjct: 360 VRSFDEVKEELRKEIALDAAREQLVGLHDKIEDERAGGVSVKEIAEQLKLKLVTVDAVDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP---DGSYMWVQIKESIPARDR 477
           +GKD  G EV  +P    LL  VF  D  +  D T+A+    DGS  W  ++E IPARDR
Sbjct: 420 SGKDQNGDEVKDLPEPRALLQEVFKAD--VGTD-TLAVNIGRDGS-AWFDVEEIIPARDR 475

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
            L+EV  +V  DW T +      +   + + E  ++G    DI   LG  + +   + R 
Sbjct: 476 TLDEVRDEVAADW-TAEQQRAALAAKAKELKERIEKGAKLADIASELGLVVESKTGLTRA 534

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT----NSKVGPVQEKDKFISY 593
            N+        I+  F+GP   V   P   G   V+ +VT     +    +      I  
Sbjct: 535 TNDATLSPAAVIA-AFAGPNGHVANAPGIGGDGQVLMQVTAVEDQAPADALDNDSSQIEA 593

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           + +    D+LD +++ L++ Y V+++ +L +  L
Sbjct: 594 IARASGDDILDQMVSTLQTAYGVSINQSLAETAL 627


>gi|307310586|ref|ZP_07590233.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium
           meliloti BL225C]
 gi|307320968|ref|ZP_07600375.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium
           meliloti AK83]
 gi|306893342|gb|EFN24121.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium
           meliloti AK83]
 gi|306899696|gb|EFN30322.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium
           meliloti BL225C]
          Length = 630

 Score =  347 bits (890), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 206/634 (32%), Positives = 352/634 (55%), Gaps = 14/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A++T V K  L +L + F++WG    L   +  + VV+VG  KV  S F  ++
Sbjct: 1   MLDSLRNAAQTRVVKGLLALLILSFMVWG-GQTLMVPNTPNAVVTVGDVKVSASDFRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++ ++S+++G  ++ ++A++ G++ ++   LV+GA LDQ   D+ L     R+   I 
Sbjct: 60  ERQVALLSRQLGTPLSRQQAQAFGVENQVYAQLVAGAALDQLATDMNLGLSEDRLARLIG 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FHG + +F    F S L   G+ E++YI++ +++  R+ +V     G     +L+D
Sbjct: 120 EDPAFHGANGQFDRLTFSSVLRNAGLTEQDYINNRSQVAVRSQIVDALTDGYTAPKVLVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              ++  E R++DY++L+N ++ A+  P + VL  WFE  K NYRAPEY++ISYI  +  
Sbjct: 180 AIGKYRHETRTIDYLLLSNANIDAVKTPGDDVLAPWFESRKANYRAPEYRKISYIKLEPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++++EL+A+YEK KE Y +P  RTVEQL FP+++ AD A   L  G  F  L 
Sbjct: 240 DLAAPDAVTSEELRADYEKRKESYRTPATRTVEQLTFPSREAADAAAAKLAAGTSFDDLV 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           + +GK+ +D+ LG F+KE +PD  +AD+ F++A+ G  TPV+ G+FG VI  V+NI+P  
Sbjct: 300 KAEGKTSADVLLGDFTKERMPDAKIADAAFAVAQDGGTTPVVEGAFGPVILRVTNIRPDA 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             SF EVK+++  ++ +  A E++   + ++E+  A G S+ EI+ + K+  + +  VD 
Sbjct: 360 VRSFDEVKEELRKEIALDAAREQLVGLHDKIEDERAGGVSVKEIAEQLKLKLVTVDAVDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP---DGSYMWVQIKESIPARDR 477
           +GKD  G EV  +P    LL  VF  D  +  D T+A+    DGS  W  ++E IPARDR
Sbjct: 420 SGKDQNGDEVKDLPEPRALLQEVFKAD--VGTD-TLAVNIGRDGS-AWFDVEEIIPARDR 475

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
            L+EV  +V  DW T +      +   + + E  ++G    DI   LG  + +   + R 
Sbjct: 476 TLDEVRDEVAADW-TAEQQRAALAAKAKELKERIEKGAKLADIASELGLVVESKTGLTRA 534

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT----NSKVGPVQEKDKFISY 593
            N+        I+  F+GP   V   P   G   V+ +VT     +    +      I  
Sbjct: 535 TNDATLSPAAVIA-AFAGPNGHVANAPGIGGDGQVLMQVTAVEEKAPADALDNDSSQIEA 593

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           + +    D+LD +++ L++ Y V+++ +L +  L
Sbjct: 594 IARASGDDILDQMVSTLQTAYGVSINQSLAETAL 627


>gi|15888991|ref|NP_354672.1| peptidyl-prolyl cis-trans isomerse D [Agrobacterium tumefaciens
           str. C58]
 gi|15156777|gb|AAK87457.1| peptidyl-prolyl cis-trans isomerse D [Agrobacterium tumefaciens
           str. C58]
          Length = 630

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 193/634 (30%), Positives = 350/634 (55%), Gaps = 10/634 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R ASRT  AK+ L++L V F +WG+S +L + + S  V++VG Q V    F  ++
Sbjct: 1   MLDSLRNASRTMAAKLLLLLLVVSFGVWGVSASLVTAN-SHAVMTVGDQTVSPQEFRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +S++ G  + +E+A++ G+D+++   L +GA LD+    + L     R+   IA
Sbjct: 60  QRQVSDLSRQFGTRLTTEQAKAFGIDRQVFSQLAAGAALDELASKMNLGLSENRLANLIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F  ++F  RL   G  E +YI   +K+  R+ +V     G     +L+D
Sbjct: 120 EDPAFKSVNGQFDRNLFSERLRNSGFREDDYIKERSKVAVRSQIVEAVSDGFAAPQVLVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K++  E R+VDY++L+N  +P +  P + VLT WFE  K  YRAPE+++ +Y+  +  
Sbjct: 180 ALKQYRNEQRAVDYVILSNAVIPPVKAPGDDVLTPWFETNKSKYRAPEFRKFTYVKLEPS 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQL 299
           +  +   +++ ++   Y  +K+ + +   RTVEQL FP+++ A  A + ++ G   + Q+
Sbjct: 240 DIAEPASVTDAQIADYYNSHKDSFRTAGRRTVEQLTFPDKEMAAAAAEQIRLGNTTYDQV 299

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            ++QGK+ SD++LG F+K+ IPD S+AD+ F++ K G  +PV+ GSFG ++  V+ IKP 
Sbjct: 300 VKDQGKTASDVTLGEFTKDTIPDQSIADAAFAIQKDGGVSPVVDGSFGPILLRVTGIKPE 359

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            T +  E K+DI   +    A+E++   + R E+  A G+S+ + +++  +  + +  +D
Sbjct: 360 TTRTLDEAKEDIRKDLATAAAAEEITNVHDRYEDLRAGGSSLADAAKQLNLKPVTIDAID 419

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
            AG + KG  +  +P   QL   VF K +P +    + L    Y+W  +++ IPARDR L
Sbjct: 420 AAGLNEKGDAIEGLP-SPQLAQDVF-KTEPGTDALPINLGREGYIWFDVEQIIPARDRTL 477

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            EV  DV  DW   +    +++KA++L     K G+    +   L  ++   + + R  +
Sbjct: 478 AEVRDDVVADWTAEQQRTALAAKADELKARVEK-GETLEAVAGELSLAVEQKSGLRRT-S 535

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT----NSKVGPVQEKDKFISYLT 595
           E+  FG   I+ VFSG   +V      +G S ++FKVT    N+    +   D+  + + 
Sbjct: 536 EDAIFGRQTIAAVFSGAEGVVGTAADADGSSRILFKVTSVDANAPADALANDDQQFTAIA 595

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
           +    D+LD ++  L++ Y VT++  L  + + G
Sbjct: 596 RAAGDDMLDQMVNRLQNDYGVTINQALADQAMVG 629


>gi|325293071|ref|YP_004278935.1| peptidyl-prolyl cis-trans isomerase D [Agrobacterium sp. H13-3]
 gi|325060924|gb|ADY64615.1| peptidyl-prolyl cis-trans isomerase D [Agrobacterium sp. H13-3]
          Length = 630

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 197/634 (31%), Positives = 351/634 (55%), Gaps = 10/634 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R ASRT  AK+ L++L V F +WG+S +L + S S  V++VG Q V    F  ++
Sbjct: 1   MLDSLRNASRTMAAKLLLLLLVVSFGVWGVSASLVT-SNSHAVMTVGDQTVSPQEFRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +S++ G  + +E+A++ G+D+++   L +GA+LD+    + L     R+   IA
Sbjct: 60  QRQVSDLSRQFGARLTTEQAKAFGIDRQVFSQLAAGASLDELASKMNLGLSEDRLANLIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F   +F  RL   G+ E +YI   +K+  R+ +V     G +   +L+D
Sbjct: 120 EDPAFKSVNGQFDRTLFTERLRNSGLREDDYIKERSKVAVRSQIVEAVSDGFKAPQVLVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K++  E RSVDY++L+N  +  +  P + VL  WFE  K  YRAPE+++ +Y+  +  
Sbjct: 180 ALKQYRNEQRSVDYVILSNAVIAPVKAPGDDVLAPWFETNKAKYRAPEFRKFTYVKLEPS 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQL 299
           +   +  +++ ++   Y  +K+ + +   RTVEQL FP ++ A+ A + ++ G   + Q+
Sbjct: 240 DIADQASVTDAQIADYYNSHKDSFRTAGRRTVEQLTFPEKEMAEAAAEQIRLGNTTYDQV 299

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            ++QGK+ SD++LG F+K+ IPD S+AD+ F++ K G  +PV+ GSFG VI  ++ IKP 
Sbjct: 300 VKDQGKTASDVTLGEFTKDTIPDQSIADAAFAVQKDGGVSPVVAGSFGPVILRITGIKPE 359

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            T + +E K+DI   +    A+E+V   + R E+  A G+S+ + +++  +  + +  +D
Sbjct: 360 TTRTLEEAKEDIRKDLATAAAAEEVTNVHDRYEDLRAGGSSLADAAKQLNLKPVTIDAID 419

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
            AG D KG  +  +P   QL   VF K +P ++   + L    Y+W  + + IPARDR L
Sbjct: 420 AAGLDEKGDAIQDLP-SPQLAQEVF-KTEPGTEALPINLGREGYIWFDVDQIIPARDRTL 477

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            EV  DV  DW   +    +++KA++L     K G+    +   LG ++   + + R  +
Sbjct: 478 AEVRDDVVADWTAEQQRTALATKADELKARVEK-GETLAAVAGELGLAVEQKSGLRRT-S 535

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV----TNSKVGPVQEKDKFISYLT 595
           E+  FG   I+ VFSG   M       +G S ++FKV    TN+    +   D+  + + 
Sbjct: 536 EDAIFGRQTITAVFSGAEGMTGTAADADGSSRILFKVTAVDTNAPADALANDDQQFAAIA 595

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
           +    D+LD ++  L++ Y VT++  L  + + G
Sbjct: 596 RAAGDDMLDQMVNRLQNDYGVTINQALADQAMVG 629


>gi|163760078|ref|ZP_02167161.1| peptidyl-prolyl cis-trans isomerse D [Hoeflea phototrophica DFL-43]
 gi|162282477|gb|EDQ32765.1| peptidyl-prolyl cis-trans isomerse D [Hoeflea phototrophica DFL-43]
          Length = 651

 Score =  333 bits (853), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 189/634 (29%), Positives = 354/634 (55%), Gaps = 14/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK +++WVA+  LV+L   F +WG+S ++ +  GS+ VV+VG  +V  + F  ++
Sbjct: 23  MLDTLRKGAKSWVAQFLLVLLVASFAVWGISGSILNAGGSA-VVTVGDTEVSPNEFRLAY 81

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +++  + Q++G  +  E+AR+ G++ ++   L++GA LD+   ++ L     R+   IA
Sbjct: 82  DRQMAAVGQQLGTRLTQEQARAFGIENQVYSQLIAGALLDEQAREMNLGLSDSRLAALIA 141

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           +   FH  +++F   +F   L   G++E++YI   +++  RT +V     G    + ++ 
Sbjct: 142 QDAAFHDFNSRFDRSIFRRVLNSVGMSEEDYIRSRSQVAVRTQIVEAVAEGFDAPDAMIS 201

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              ++  E R V+Y++L   ++  +  PS+  L+ +FE  K  Y APEY++ +Y+  +  
Sbjct: 202 ALAQYEAETRDVNYLLLTKANIDPVPAPSDDELSAFFESNKTRYAAPEYRKFTYVKLESE 261

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      IS++  +A+YE  K +Y + E RT++QLVF +++ A+ A   L  GK F  L 
Sbjct: 262 DIADPAAISDEMARADYEARKNRYTTAETRTIDQLVFADREAAEAAEAELASGKSFDTLI 321

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QG++ +D+ LGSF++E +PD SLAD+ F++   G  +PV+ G FG VI  V+ I P  
Sbjct: 322 TDQGRTAADVRLGSFTEETVPDQSLADAAFAITDAGGVSPVVDGQFGPVILRVAEITPES 381

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           + SF+EV+ +I +++ + +A++ + + +   E+  A G ++ E + ++K+  + +   D 
Sbjct: 382 SRSFEEVQTEIRDELALAEAAQVLLDVHDAYEDARAGGMTLMEAATQQKLTPVTIEAADR 441

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           +G+   G  ++ +P  +QLL  VF + +P  +   ++L    ++W ++++  PARDR L+
Sbjct: 442 SGQTPDGTVLSELPQSQQLLRDVF-ETEPGVEAPPISLGVEGFVWFEVEDVTPARDRTLD 500

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V  DW + +  E + +KA  L  E  + G +   I   L  ++ T   +NR D  
Sbjct: 501 EVREQVVADWSSEQELEALGAKATAL-QERLERGADLSAIAAELSIAVETKFSLNRTDT- 558

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT--NSKVGPV-----QEKDKFISY 593
           +  FG   ++  FSGP  +V      +G + ++ +VT  N   G       QE+   IS 
Sbjct: 559 DPVFGEAAVAAAFSGPQGLVTVANDTSGDNKILIQVTSVNDASGTTADSVSQEQRDQIS- 617

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
             Q +  D+LD V+A L+++Y V+V+  L +R L
Sbjct: 618 --QQIADDILDQVVAQLQAEYGVSVNRELAERAL 649


>gi|227822015|ref|YP_002825986.1| peptidyl-prolyl cis-trans isomerse D [Sinorhizobium fredii NGR234]
 gi|227341015|gb|ACP25233.1| peptidyl-prolyl cis-trans isomerse D [Sinorhizobium fredii NGR234]
          Length = 630

 Score =  330 bits (846), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 194/633 (30%), Positives = 341/633 (53%), Gaps = 12/633 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A++T + K  L +L + F++WG    L     S  VV+VG  KV  S +  ++
Sbjct: 1   MLDSLRNAAQTRIVKGLLAILILSFMVWG-GQTLMVTGTSDAVVTVGDVKVSTSDYRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++L ++S+++G  +  ++AR+ G++ ++   LV+GA LDQ  ED+ L     R+   I 
Sbjct: 60  ERQLSLLSRQLGTPLTRQQARAFGVEAQVYSQLVAGAALDQLAEDMNLGLSEDRLARLIG 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FHG + +F    F S L   G+ E++YI + +++  R+ +V     G     +L+D
Sbjct: 120 EDPAFHGANGQFDRMTFSSVLRNAGLTEQDYIKNRSQVAVRSQIVDALSDGFAAPAILVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              ++  E R++DY++L+N ++ A+  P + VL  WFE +K NYRAPEY++ SYI  +  
Sbjct: 180 AVGKYRHETRTIDYLLLSNANIDAVKAPGDDVLAPWFESHKANYRAPEYRKFSYIKLEPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++++EL+A+YEK KE + +   RT+EQL FP+++ AD     L  G  F  L 
Sbjct: 240 DLVVNDAVTDEELRADYEKRKESFRTAATRTIEQLAFPSREAADAGAAKLSAGTSFDDLV 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           + +GKS +D+ LG F+KE +PD   A++ F++A  G  TPV+ G+FG VI  V+NI+   
Sbjct: 300 KAEGKSAADVLLGDFTKERMPDQKAAEAAFAVASDGGVTPVVEGAFGPVILRVTNIRQET 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             SF EVK+++   + ++ A +++   + ++E+  A G ++ E++ + K+    +  +D 
Sbjct: 360 VRSFDEVKEELRKDIALSVARDQLVGLHDKIEDERAAGATVKEVADQLKLKLATVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG--SYMWVQIKESIPARDRK 478
            GKD  G +V  +P +  LL  VF  +  L    T+A+  G   Y W  ++E IPARDR 
Sbjct: 420 TGKDQNGDDVTGLPEQRALLQDVFKAEVGL---ETLAVHIGRDGYAWFDLEEVIPARDRT 476

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
           L+EV  +V  DW T +      +     + +  K+G    DI   LG  + T   ++R  
Sbjct: 477 LDEVRDEVAADW-TAEQQRVALAAKAAELKDRVKKGAKLADIAGELGLVVETKTGLSR-S 534

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT----NSKVGPVQEKDKFISYL 594
            ++       I+  F GP   V           ++ +VT    ++    +    + I  +
Sbjct: 535 TQDAALSEAAIAAAFGGPNGHVANAAGMGSEGQILMQVTAVDDSAPANALDNDSRQIEAI 594

Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +    D+LD ++A L+S Y V+++  L ++ L
Sbjct: 595 ARASGDDILDQMVATLQSVYGVSINQTLAEQAL 627


>gi|150396621|ref|YP_001327088.1| putative peptidyl-prolyl cis-trans isomerase [Sinorhizobium medicae
           WSM419]
 gi|150028136|gb|ABR60253.1| putative peptidyl-prolyl CIS-trans isomerase protein [Sinorhizobium
           medicae WSM419]
          Length = 630

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 193/631 (30%), Positives = 341/631 (54%), Gaps = 8/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A++T V K  L +L + F++WG    L   +  + VV+VG  KV  S F  ++
Sbjct: 1   MLDSLRNAAQTRVVKALLALLILSFMVWG-GQTLMVPNTPNAVVTVGDIKVSPSDFRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++ ++S+++G  +  ++A++ G++ ++   LV+GA LDQ   D+ L     R+   I 
Sbjct: 60  ERQVALLSRQLGTPLTRQQAQAFGVENQVYAQLVAGAALDQLATDMNLGLSEDRLARLIG 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FHG + +F    F S L   G+ E++YI++ +++  R+ +V     G     +L++
Sbjct: 120 EDPAFHGVNGQFDRLTFSSVLRNAGLTEQDYINNRSQVAVRSQIVDALTDGYTAPKVLVE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              ++  E R+VDY++L+N ++ A+  P + VL  WFE  K NYRAPEY++ SYI  +  
Sbjct: 180 AVDKYRHETRTVDYLLLSNANIDAVKTPGDDVLAPWFESRKANYRAPEYRKFSYIKLEPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ +EL+A+Y+K KE + +P  RTVEQL FP+++ AD A   L  G  F  L 
Sbjct: 240 DLAASDSVTEEELRADYDKRKESFRTPATRTVEQLAFPSREAADAAAAKLSAGTSFDDLV 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           + +GK+ +D+ LG F+KE +PD  +AD+ F++A+ G  TPV+ G FG VI  V+NI+   
Sbjct: 300 KAEGKTSADVLLGDFTKERMPDAKIADAAFAVAQDGGTTPVVDGPFGPVILRVTNIRSEA 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             S+ EVK+++  ++ +  A +++   + ++E+  A G ++ EI+ + K+  + +  VD 
Sbjct: 360 VRSYDEVKEELRKEIALDAARDQLVGLHDKIEDERAGGVTVKEIAEQLKLKLVTVVAVDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           +GKD  G +V  +P    LL  VF K D  +   +V +     +W  ++E IP RDR L+
Sbjct: 420 SGKDQNGDDVKDLPEPRALLQEVF-KADVGTDTLSVNIGRDGSVWFDVEEIIPGRDRTLD 478

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV  +V  DW T +      +   + + E  ++G    DI   LG  + T   + R  N+
Sbjct: 479 EVRDEVAADW-TAEQQRAALAAKAKELKERVEKGAKLADIASELGLVVETKTGLTRSTND 537

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT----NSKVGPVQEKDKFISYLTQ 596
                   I+  F G    V   P   G   V+ +VT     +    +    + I  + +
Sbjct: 538 ATLSPAAVIA-AFGGANGHVANAPGIGGDGQVLMQVTAVEEKAPADALDNDSRQIEAIAR 596

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               D+LD +++ L++ Y V+++  L +  L
Sbjct: 597 ASGDDILDQMVSTLQTAYGVSINQTLAETAL 627


>gi|148560591|ref|YP_001259060.1| rotamase family protein [Brucella ovis ATCC 25840]
 gi|148371848|gb|ABQ61827.1| rotamase family protein [Brucella ovis ATCC 25840]
          Length = 628

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 187/634 (29%), Positives = 324/634 (51%), Gaps = 15/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L  +G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             S  EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKSLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537
           EV   V   WK     EE   + NQ + E  K   +G     I   LG    T   I R 
Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593
            N+    G    +Q+F G   +V      +  + ++FKVT     +  GP    +    Y
Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           L   +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|256061222|ref|ZP_05451373.1| rotamase family protein [Brucella neotomae 5K33]
 gi|261325229|ref|ZP_05964426.1| rotamase [Brucella neotomae 5K33]
 gi|261301209|gb|EEY04706.1| rotamase [Brucella neotomae 5K33]
          Length = 628

 Score =  301 bits (770), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 187/634 (29%), Positives = 323/634 (50%), Gaps = 15/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A++TW+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQTWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L  +G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQKRSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537
           EV   V   WK     EE   + NQ + E  K   +G     I   LG    T   I R 
Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593
            N+    G    +Q+F G   +V      +  + ++FKVT     +  GP    +    Y
Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           L   +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|306844003|ref|ZP_07476598.1| rotamase family protein [Brucella sp. BO1]
 gi|306275758|gb|EFM57482.1| rotamase family protein [Brucella sp. BO1]
          Length = 628

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 187/634 (29%), Positives = 324/634 (51%), Gaps = 15/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAARQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L  +G  +PV+ GSFG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGSFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537
           EV   V   WK     EE   + NQ + E  K   +G     I   LG    T   I R 
Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593
            N+    G    +Q+F G   +V      +  + ++FKVT     +  GP    +    Y
Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           L   +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 593 LATALADDVLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|225627608|ref|ZP_03785645.1| rotamase family protein [Brucella ceti str. Cudo]
 gi|256159868|ref|ZP_05457597.1| rotamase family protein [Brucella ceti M490/95/1]
 gi|256255110|ref|ZP_05460646.1| rotamase family protein [Brucella ceti B1/94]
 gi|260168841|ref|ZP_05755652.1| rotamase family protein [Brucella sp. F5/99]
 gi|261222305|ref|ZP_05936586.1| rotamase [Brucella ceti B1/94]
 gi|261758329|ref|ZP_06002038.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. F5/99]
 gi|265998269|ref|ZP_06110826.1| rotamase [Brucella ceti M490/95/1]
 gi|225617613|gb|EEH14658.1| rotamase family protein [Brucella ceti str. Cudo]
 gi|260920889|gb|EEX87542.1| rotamase [Brucella ceti B1/94]
 gi|261738313|gb|EEY26309.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. F5/99]
 gi|262552737|gb|EEZ08727.1| rotamase [Brucella ceti M490/95/1]
          Length = 628

 Score =  300 bits (767), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 186/634 (29%), Positives = 324/634 (51%), Gaps = 15/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L  +G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537
           EV   V   WK     EE   + NQ + E  K   +G     I   LG    T   I R 
Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT----NSKVGPVQEKDKFISY 593
            N+    G    +Q+F G   +V      +  + ++FKVT    ++  GP    +    Y
Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTESAAAGPEAIPEDQQKY 592

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           L   +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|306841864|ref|ZP_07474544.1| rotamase family protein [Brucella sp. BO2]
 gi|306287994|gb|EFM59396.1| rotamase family protein [Brucella sp. BO2]
          Length = 628

 Score =  299 bits (766), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 188/634 (29%), Positives = 322/634 (50%), Gaps = 15/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEVHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q +K G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAARQKIKAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L  +G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE---GKNFRDIGKNLGASLLTTNQINRM 537
           EV   V   WK     EE   + NQ V E  K    G     I   LG    T   I R 
Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRVEELKKRLEGGTTLDTIASELGLEKQTKRGITRT 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593
            N+    G    +Q+F G   +V      +  + ++FKVT     +  GP    +    Y
Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           L   +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 593 LATALADDVLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|23502017|ref|NP_698144.1| rotamase family protein [Brucella suis 1330]
 gi|161619091|ref|YP_001592978.1| rotamase family protein [Brucella canis ATCC 23365]
 gi|254704427|ref|ZP_05166255.1| rotamase family protein [Brucella suis bv. 3 str. 686]
 gi|254710215|ref|ZP_05172026.1| rotamase family protein [Brucella pinnipedialis B2/94]
 gi|256031709|ref|ZP_05445323.1| rotamase family protein [Brucella pinnipedialis M292/94/1]
 gi|256369565|ref|YP_003107075.1| rotamase family protein [Brucella microti CCM 4915]
 gi|260566326|ref|ZP_05836796.1| peptidyl-prolyl cis-trans isomerase D [Brucella suis bv. 4 str. 40]
 gi|261317773|ref|ZP_05956970.1| rotamase [Brucella pinnipedialis B2/94]
 gi|261755104|ref|ZP_05998813.1| rotamase [Brucella suis bv. 3 str. 686]
 gi|265988804|ref|ZP_06101361.1| rotamase [Brucella pinnipedialis M292/94/1]
 gi|23347969|gb|AAN30059.1| rotamase family protein [Brucella suis 1330]
 gi|161335902|gb|ABX62207.1| rotamase family protein [Brucella canis ATCC 23365]
 gi|255999727|gb|ACU48126.1| rotamase family protein [Brucella microti CCM 4915]
 gi|260155844|gb|EEW90924.1| peptidyl-prolyl cis-trans isomerase D [Brucella suis bv. 4 str. 40]
 gi|261296996|gb|EEY00493.1| rotamase [Brucella pinnipedialis B2/94]
 gi|261744857|gb|EEY32783.1| rotamase [Brucella suis bv. 3 str. 686]
 gi|264661001|gb|EEZ31262.1| rotamase [Brucella pinnipedialis M292/94/1]
          Length = 628

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 186/634 (29%), Positives = 323/634 (50%), Gaps = 15/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L  +G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537
           EV   V   WK     EE   + NQ + E  K   +G     I   LG    T   I R 
Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593
            N+    G    +Q+F G   +V      +  + ++FKVT     +  GP    +    Y
Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           L   +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|254714212|ref|ZP_05176023.1| rotamase family protein [Brucella ceti M644/93/1]
 gi|254717648|ref|ZP_05179459.1| rotamase family protein [Brucella ceti M13/05/1]
 gi|261219487|ref|ZP_05933768.1| rotamase [Brucella ceti M13/05/1]
 gi|261321982|ref|ZP_05961179.1| rotamase [Brucella ceti M644/93/1]
 gi|260924576|gb|EEX91144.1| rotamase [Brucella ceti M13/05/1]
 gi|261294672|gb|EEX98168.1| rotamase [Brucella ceti M644/93/1]
          Length = 628

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 185/634 (29%), Positives = 324/634 (51%), Gaps = 15/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  L++   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLNEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L  +G  +PV+ G+FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGNFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537
           EV   V   WK     EE   + NQ + E  K   +G     I   LG    T   I R 
Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593
            N+    G    +Q+F G   +V      +  + ++FKVT     +  GP    +    Y
Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           L   +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|62290052|ref|YP_221845.1| rotamase family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699979|ref|YP_414553.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis biovar
           Abortus 2308]
 gi|189024292|ref|YP_001935060.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus S19]
 gi|237815561|ref|ZP_04594558.1| rotamase family protein [Brucella abortus str. 2308 A]
 gi|254689364|ref|ZP_05152618.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 6 str.
           870]
 gi|254697497|ref|ZP_05159325.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730394|ref|ZP_05188972.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 4 str.
           292]
 gi|256257610|ref|ZP_05463146.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 9 str.
           C68]
 gi|260546604|ref|ZP_05822343.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus NCTC 8038]
 gi|260754881|ref|ZP_05867229.1| rotamase [Brucella abortus bv. 6 str. 870]
 gi|260758098|ref|ZP_05870446.1| rotamase [Brucella abortus bv. 4 str. 292]
 gi|260761922|ref|ZP_05874265.1| rotamase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883893|ref|ZP_05895507.1| rotamase [Brucella abortus bv. 9 str. C68]
 gi|297248452|ref|ZP_06932170.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 5 str.
           B3196]
 gi|62196184|gb|AAX74484.1| rotamase family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616080|emb|CAJ11118.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis biovar
           Abortus 2308]
 gi|189019864|gb|ACD72586.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus S19]
 gi|237788859|gb|EEP63070.1| rotamase family protein [Brucella abortus str. 2308 A]
 gi|260095654|gb|EEW79531.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus NCTC 8038]
 gi|260668416|gb|EEX55356.1| rotamase [Brucella abortus bv. 4 str. 292]
 gi|260672354|gb|EEX59175.1| rotamase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674989|gb|EEX61810.1| rotamase [Brucella abortus bv. 6 str. 870]
 gi|260873421|gb|EEX80490.1| rotamase [Brucella abortus bv. 9 str. C68]
 gi|297175621|gb|EFH34968.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 5 str.
           B3196]
          Length = 628

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 185/630 (29%), Positives = 322/630 (51%), Gaps = 15/630 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L  +G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537
           EV   V   WK     EE   + NQ + E  K   +G     I   LG    T   I R 
Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593
            N+    G    +Q+F G   +V      +  + ++FKVT     +  GP    +    Y
Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTKPAAAGPEAIPEDQQKY 592

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           L   +  D+L  ++  L+ QY V V+  +I
Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVI 622


>gi|254701881|ref|ZP_05163709.1| rotamase family protein [Brucella suis bv. 5 str. 513]
 gi|261752444|ref|ZP_05996153.1| rotamase [Brucella suis bv. 5 str. 513]
 gi|261742197|gb|EEY30123.1| rotamase [Brucella suis bv. 5 str. 513]
          Length = 628

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 186/634 (29%), Positives = 322/634 (50%), Gaps = 15/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAACNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L  +G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537
           EV   V   WK     EE   + NQ + E  K   +G     I   LG    T   I R 
Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593
            N+    G     Q+F G   +V      +  + ++FKVT     +  GP    +    Y
Sbjct: 534 TNDAD-IGLAATEQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           L   +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|294852479|ref|ZP_06793152.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. NVSL 07-0026]
 gi|294821068|gb|EFG38067.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. NVSL 07-0026]
          Length = 628

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 185/634 (29%), Positives = 323/634 (50%), Gaps = 15/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L +  I  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSSIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +  +   AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAKKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L  +G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537
           EV   V   WK     EE   + NQ + E  K   +G     I   LG    T   I R 
Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593
            N+    G    +Q+F G   +V      +  + ++FKVT     +  GP    +    Y
Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           L   +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|110633989|ref|YP_674197.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium sp. BNC1]
 gi|110284973|gb|ABG63032.1| peptidyl-prolyl cis-trans isomerase D [Chelativorans sp. BNC1]
          Length = 628

 Score =  297 bits (761), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 183/631 (29%), Positives = 327/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RKA+ TWVAK+ LVVL V F +WG+S ++ + + S  V++ G   V    +  ++
Sbjct: 1   MLDSLRKAATTWVAKLLLVVLVVSFAVWGISGSMLTGT-SGDVITAGGTSVSALDYRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            + +  +S++ G  +  E+A + G+D+++L  L +GA LD+   +IGL     ++    A
Sbjct: 60  DRRIAELSRQFGTRLTREQAVAFGIDEQVLSQLSAGAVLDETAREIGLGVSKDKLAELTA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F G D +F    F   L+R G+  ++Y+ +  +   R  ++     G+   + LL 
Sbjct: 120 SDPAFRGLDGRFDRSQFEFVLSRIGMRPEDYLKNREQAAVRQQIIDAVASGVSAPDELLR 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R+  E+R+++Y+ L    V  +  PS+  L  WFE+ KDNY APEY++I Y+  +  
Sbjct: 180 SLARYRGEDRTIEYVALPRSAVEPVEPPSDEQLQTWFEERKDNYAAPEYRKIEYVKLEAE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      IS++++++ Y++N+ +Y +PE R VEQL F + +EA  A +S++ G  F  L 
Sbjct: 240 DIADPSVISDEQVESYYQQNQAQYTTPERRQVEQLTFASAEEATAARESMRTGTTFEDLI 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           E QGK L D+SLG+ ++  IPD  +AD++FSL +    + V+ G+FG V+  V+ I P  
Sbjct: 300 ERQGKKLQDVSLGTLTRADIPDQVIADAVFSLTED-QVSDVVQGTFGPVLLRVTEITPEA 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                +VK++I  Q+ + +A+  + + Y + E+  A G ++ E + R  +    +  VD 
Sbjct: 359 VTPLDQVKEEIRQQLALDEANRLLLDTYDQYEDARAGGDTLQEAAERLSLTVGTIDAVDR 418

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G    G  V  +P    LL   F  +  + ++  + L    +++ ++ E +PARDR+  
Sbjct: 419 DGNKPDGTRVEDVPNLPALLAEAFQTEVGV-ENAPINLTGSGFLFYEVAEIVPARDREFS 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V +DW   +    + ++A  L  E  K GK   +I   LG   +    + R +  
Sbjct: 478 EVRDRVLEDWTEAEVTSRLDARAKALQEEI-KNGKTLDEISTELGQEKMVKRGLKR-EAS 535

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISYLTQ 596
           +   G  G++ VFS             G +  +F+VT     +        D   + + Q
Sbjct: 536 DADLGQTGVAAVFSVAKGETGTVANPAGDARFIFQVTEVFEPASATAESLPDDIKTAVNQ 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  DLLD ++  L++++ VTV+   +Q+ L
Sbjct: 596 GLENDLLDQLVTRLQAEHGVTVNRTAMQQAL 626


>gi|254719202|ref|ZP_05181013.1| rotamase family protein [Brucella sp. 83/13]
 gi|265984198|ref|ZP_06096933.1| rotamase [Brucella sp. 83/13]
 gi|306837950|ref|ZP_07470808.1| rotamase family protein [Brucella sp. NF 2653]
 gi|264662790|gb|EEZ33051.1| rotamase [Brucella sp. 83/13]
 gi|306406874|gb|EFM63095.1| rotamase family protein [Brucella sp. NF 2653]
          Length = 628

 Score =  297 bits (760), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 186/634 (29%), Positives = 322/634 (50%), Gaps = 15/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++ ++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAISVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +       I  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADTIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAARQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L  +G  +PV+ GSFG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGSFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  VD 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAVDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537
           EV   V   WK     EE   + NQ + E  K   +G     I   LG    T   I R 
Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593
            N+    G    +Q+F G   +V      +  + ++FKVT     +  GP    +    Y
Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           L   +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 593 LATALADDVLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|163843404|ref|YP_001627808.1| rotamase family protein [Brucella suis ATCC 23445]
 gi|163674127|gb|ABY38238.1| rotamase family protein [Brucella suis ATCC 23445]
          Length = 628

 Score =  296 bits (759), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 185/634 (29%), Positives = 322/634 (50%), Gaps = 15/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L  +G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +  +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATTADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537
           EV   V   WK     EE   + NQ + E  K   +G     I   LG    T   I R 
Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593
            N+    G    +Q+F G   +V      +  + ++FKVT     +  GP    +    Y
Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           L   +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|17987128|ref|NP_539762.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1
           str. 16M]
 gi|225852638|ref|YP_002732871.1| rotamase family protein [Brucella melitensis ATCC 23457]
 gi|256044795|ref|ZP_05447699.1| rotamase family protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113701|ref|ZP_05454505.1| rotamase family protein [Brucella melitensis bv. 3 str. Ether]
 gi|256263869|ref|ZP_05466401.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 2
           str. 63/9]
 gi|260565602|ref|ZP_05836086.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1
           str. 16M]
 gi|265991219|ref|ZP_06103776.1| rotamase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995055|ref|ZP_06107612.1| rotamase [Brucella melitensis bv. 3 str. Ether]
 gi|17982791|gb|AAL52026.1| peptidyl-prolyl cis-trans isomerase d [Brucella melitensis bv. 1
           str. 16M]
 gi|225641003|gb|ACO00917.1| rotamase family protein [Brucella melitensis ATCC 23457]
 gi|260151670|gb|EEW86764.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1
           str. 16M]
 gi|262766168|gb|EEZ11957.1| rotamase [Brucella melitensis bv. 3 str. Ether]
 gi|263002003|gb|EEZ14578.1| rotamase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094000|gb|EEZ17934.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 2
           str. 63/9]
 gi|326409157|gb|ADZ66222.1| rotamase family protein [Brucella melitensis M28]
 gi|326538867|gb|ADZ87082.1| rotamase family protein [Brucella melitensis M5-90]
          Length = 628

 Score =  296 bits (759), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 184/630 (29%), Positives = 322/630 (51%), Gaps = 15/630 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +P+ RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPKTRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L  +G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537
           EV   V   WK     EE   + NQ + E  K   +G     I   LG    T   I R 
Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593
            N+    G    +Q+F G   +V      +  + ++FKVT     +  GP    +    Y
Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTKPAAAGPEAIPEDQQKY 592

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           L   +  D+L  ++  L+ QY V V+  +I
Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVI 622


>gi|254706677|ref|ZP_05168505.1| rotamase family protein [Brucella pinnipedialis M163/99/10]
 gi|261314138|ref|ZP_05953335.1| rotamase [Brucella pinnipedialis M163/99/10]
 gi|261303164|gb|EEY06661.1| rotamase [Brucella pinnipedialis M163/99/10]
          Length = 628

 Score =  296 bits (758), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 185/634 (29%), Positives = 322/634 (50%), Gaps = 15/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L  +G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537
           EV   V   WK     EE   + N  + E  K   +G     I   LG    T   I R 
Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNPRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593
            N+    G    +Q+F G   +V      +  + ++FKVT     +  GP    +    Y
Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           L   +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|254693848|ref|ZP_05155676.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 3 str.
           Tulya]
 gi|261214133|ref|ZP_05928414.1| rotamase [Brucella abortus bv. 3 str. Tulya]
 gi|260915740|gb|EEX82601.1| rotamase [Brucella abortus bv. 3 str. Tulya]
          Length = 628

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 184/630 (29%), Positives = 321/630 (50%), Gaps = 15/630 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L  +G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537
           EV   V   WK     EE   + NQ + E  K   +G     I   L     T   I R 
Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELDLEKQTKRGITRT 533

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593
            N+    G    +Q+F G   +V      +  + ++FKVT     +  GP    +    Y
Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTKPAAAGPEAIPEDQQKY 592

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           L   +  D+L  ++  L+ QY V V+  +I
Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVI 622


>gi|260459244|ref|ZP_05807499.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium opportunistum
           WSM2075]
 gi|259034798|gb|EEW36054.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium opportunistum
           WSM2075]
          Length = 630

 Score =  291 bits (744), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 183/625 (29%), Positives = 314/625 (50%), Gaps = 13/625 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-VSGSSTVVSVGRQKVPFSSFINS 59
           ML  +R A+ TWVAK  L +L V F  WG+S  L    +G  +V++ G  KV  + +  +
Sbjct: 1   MLGTLRSAAGTWVAKTLLSLLVVSFAAWGISGRLMGGFAGHDSVITAGGTKVSINEYRLA 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           + ++L ++SQ+ G  +  E+A+ +G+D +IL  LVSGA LD+    +GL     R+    
Sbjct: 61  YDRQLAVMSQQFGQRLTHEQAKGLGIDNQILAQLVSGAVLDEQARKLGLGLSKDRLAELT 120

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F G   +F    F   L   G+  ++Y+ +  ++  R  +V     G++  +   
Sbjct: 121 REDPAFKGPSGQFDRRTFEYMLHEVGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDTFF 180

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                +  E+R+VDY+ L    V  +  PS++VL  +FE  K  Y APEY++ SY+  + 
Sbjct: 181 KAVALYRGEDRTVDYLTLPKALVEPVEAPSDSVLQAYFEANKKTYAAPEYRKFSYVRLEP 240

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +      +++ ++  +Y KNK +Y +PE+RT+EQLVF     A  A  SLK G  F +L
Sbjct: 241 VDIMDTTAVTDQQVSDDYNKNKARYTTPEMRTIEQLVFKTPDAAKAALDSLKAGATFDKL 300

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
              +GK+ +D  LG+ +K+ I D ++AD+ F+L    + +PV+ G+FG V+  V+ IKP 
Sbjct: 301 VAAEGKTPADTLLGTLAKDKIADKAVADAAFAL-NANEVSPVVQGAFGPVLLRVTEIKPE 359

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
                 EV   I   + + +AS  + + +   E+  A G+S+ + + + K+  I +  +D
Sbjct: 360 VVKPLAEVSDQIRKDLALGEASRILLDVHDNYEDTRASGSSLADAAAKLKLKDITIDAID 419

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
            +G    G  V  +P   +L+  VF   +P +++  +   D  +++ ++    PARDR L
Sbjct: 420 RSGLRPDGSIVKDLPESPELIKAVFDA-EPNTENDGLTTADNGFIFYEVGSVTPARDRTL 478

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           +EV   V  DW   +T + +++KA++L     K G     I   L     T   + R + 
Sbjct: 479 DEVRKKVVADWTAAETTKRLAAKADELEKRL-KAGATLDVIAGELKLEKQTKRGLRR-EA 536

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV------TNSKVGPVQEKDKFISY 593
           ++  FG +G + +F          P   G   ++FKV        +    V E  +    
Sbjct: 537 DDADFGKEGAAVMFGVGEGGTGLIPSPTGDGQILFKVAEVFEPAGADASSVPEDAQ--KS 594

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTV 618
            T  M+ DLLD ++A L++QY V V
Sbjct: 595 FTSGMSDDLLDQLVAQLQTQYDVRV 619


>gi|13470813|ref|NP_102382.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium loti
           MAFF303099]
 gi|14021556|dbj|BAB48168.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium loti
           MAFF303099]
          Length = 630

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 181/625 (28%), Positives = 317/625 (50%), Gaps = 13/625 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-VSGSSTVVSVGRQKVPFSSFINS 59
           ML I+R A+ TWVAK  L +L V F  WG+S  L    +G  +V+  G  KV  + +  +
Sbjct: 1   MLGILRSAAGTWVAKTLLSLLVVSFAAWGISGRLMGGFAGHDSVIIAGGTKVSINEYRLA 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           + ++L ++SQ+ G  +  E+A+++G+D ++L  LVSGA LD+    +GL     R+    
Sbjct: 61  YDRQLAVMSQQFGQRLTHEQAKALGIDNQVLAQLVSGAVLDEQARKLGLGLSKDRLAELT 120

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F G   +F    F   L + G+  ++Y+ +  ++  R  +V     G++  +   
Sbjct: 121 REDPAFKGPGGEFDRRTFEYMLRQVGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDAFF 180

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                +  E+R+VDY++L  + V  I  PS++VL  +FE  K  Y APEY++ SY+  + 
Sbjct: 181 KAVALYRGEDRTVDYLLLPKKLVEPIEAPSDSVLQAYFEANKKTYAAPEYRKFSYVRLEP 240

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +      ++  ++  +Y KNK +Y +PE+RT+EQLVF     A  A  SLK G  F +L
Sbjct: 241 VDIMDPTAVTEQQVSDDYNKNKTRYTTPEMRTIEQLVFKTPDAAKAALDSLKAGATFEKL 300

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
              +GK+ +D  LG+ +K+ I D ++AD+ F+L    + + V+ G+FG V+  V+ IKP 
Sbjct: 301 VTAEGKTPADTLLGTLAKDKIADKAVADAAFAL-NANEVSQVVQGAFGPVLLRVTEIKPE 359

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
                 EV   I   + + +AS  + + +   E+  A G+S+ + + + K+  + +  +D
Sbjct: 360 VVKPLAEVSDQIRKDLALGEASRILLDVHDNYEDTRASGSSLADAAAKLKLKDVTIDAID 419

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
            +G    G  V  +P    L+  VF   +P +++  +   D  +++ ++    PARDR L
Sbjct: 420 RSGLRPDGSIVKDLPESPALIKAVFDA-EPKTENEALTTADNGFIFYEVASITPARDRTL 478

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           +EV   V  DW   +T + +++KA++L  +  K G     I  +L     T   + R + 
Sbjct: 479 DEVRQKVVADWTAAETTKRLAAKASELD-KRLKAGATLDVIAGDLKLEKQTKRGLKR-EA 536

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV------TNSKVGPVQEKDKFISY 593
           ++  FG +G + +F          P   G   ++FKV        +    V E  +    
Sbjct: 537 DDADFGKEGAAVMFGVGEGGTGLIPSPTGDGQILFKVAEVFEPAGADASSVPEDAQ--KS 594

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTV 618
            T  M+ DLLD ++A L++QY V +
Sbjct: 595 FTSGMSDDLLDQLVAQLQTQYDVRI 619


>gi|118589929|ref|ZP_01547333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stappia aggregata
           IAM 12614]
 gi|118437426|gb|EAV44063.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stappia aggregata
           IAM 12614]
          Length = 630

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 179/613 (29%), Positives = 312/613 (50%), Gaps = 8/613 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK + TWVAK+F+ +L + F +WG+S  L  V G +T   VG  +V    F  ++
Sbjct: 1   MLDALRKGAGTWVAKLFIALLIMSFAVWGISGFLTGV-GQNTAAKVGDTEVSLFDFDRAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+LG ++Q+ G  +      ++G+ ++ L  LV+ A ++   +++ L     R+   I 
Sbjct: 60  RQDLGRLAQQFGRQLTPAEGAALGVPQQTLGKLVAEAAMNNTAQNMKLGVSDERLATIIQ 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F G   ++  +     L   G  E EY+    K+  R  +     G M+     L+
Sbjct: 120 SDPAFQGPGGRYDKNRLQQVLRASGYREDEYVVERRKVAERAQLAEGIAGSMKAPMTYLE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E RS DY+++    +  I DP+  VLT +FE+ K+++RAPE++ I Y+     
Sbjct: 180 VLDTYQGETRSADYLMVTPEFIGEIEDPAEDVLTTYFEEKKEDFRAPEFREIKYVTLTPA 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
              +  +IS+D+ +AEYE+  E +F PE R + Q+ FP+Q+ A+EA Q L  GK F +L 
Sbjct: 240 SLARPDDISDDDARAEYERRSEDFFQPERRKIRQMSFPSQQAAEEAAQELANGKTFDELM 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E+  + +D++LG  +K    D ++ D+ FS  ++G  +  + G F  VI +V  I P  
Sbjct: 300 GERNLTDNDVTLGVMAKADFLDEAIGDAAFS-QEEGATSGAVEGRFSTVIVNVEEILPES 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV-D 419
           T  F++VK +I   +   +A  ++ +    +E+  A G  +DE+  R  + +++ P   D
Sbjct: 359 TKPFEDVKDEIVQSLAKEQAEREILDLLDEVEDARAGGALLDEVGERFSL-TVETPAAFD 417

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
            +G    GK  AA+P  E L+   F  D  +  D  +   +  ++W  + + IP+R+R L
Sbjct: 418 ASGNGEDGKP-AALPEAEGLVAGTFDSDIGIEND-VLQFGEQGFLWYDVVKVIPSRERTL 475

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           +EV  DV   WK  + A+ +S  A  L L  ++ G  F  +    G  + +  ++ R + 
Sbjct: 476 DEVRADVIAAWKKDELAKRLSDTAADL-LAKTEGGTPFIALSAETGLEVKSATELKR-NT 533

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
               FG D +S VFSGP+         +G   VV KVT S V   Q+    ++ L Q ++
Sbjct: 534 PAGDFGRDAVSAVFSGPIGTTAIAEANDGEGRVVLKVTGSNVPEFQKDAPQVAALGQQLS 593

Query: 600 KDLLDSVIAYLKS 612
           + + D+++    S
Sbjct: 594 QQIQDTLLGQFIS 606


>gi|90419613|ref|ZP_01227523.1| peptidyl-prolyl cis-trans isomerase protein [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336550|gb|EAS50291.1| peptidyl-prolyl cis-trans isomerase protein [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 629

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 175/630 (27%), Positives = 310/630 (49%), Gaps = 12/630 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  +R +   W AKI L +L + F +WG+ D +F    ++ V++ G  +V    +  ++
Sbjct: 1   MLNTLRGSISGWTAKILLGLLVLSFAVWGIGD-VFRGGVANAVLTAGETEVSLQDYALAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +    ++Q+IG    +E A   G+ + ++  LV+GA LD+    I L     R+   IA
Sbjct: 60  NRAQSRLAQQIGRRPTAEEAEMFGVGQSVISQLVAGAVLDEQGRRIDLGLSQDRLAQVIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F      FS   F + L    I+E +YI        R+ +V     G+   +    
Sbjct: 120 EDPTFQDASGNFSRAQFQNALYNARISETDYIRGQENQAVRSQIVDAVSEGIAIPDAFST 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E R+++Y+ L    +P +ADPS+ VLT +F++  + Y APEY+ ++Y +    
Sbjct: 180 ALGLYNGERRTIEYVTLTPATIPPVADPSDEVLTTYFQENIETYAAPEYRSVAYAVLTPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  I+++ + A+YE+ KE+Y + E R V+Q+ FP++  A      L+ G  F  +A
Sbjct: 240 AMADPTTITDEAVAADYEQYKERYTTAEQRRVQQIAFPDEAAAQAGKAKLEAGTSFADVA 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E G+S +DI LG  ++  IPD ++A++ FSLA +GD + V+ G+FG V+  V+ I+P  
Sbjct: 300 SEAGRSPTDIDLGLVTRSQIPDATVAEAAFSLA-EGDVSDVVSGAFGPVLLQVTEIQPET 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             + +EV  +I + + +  AS+     Y   E+  A G +  E ++   +    +P VD 
Sbjct: 359 VQTLEEVSDEIRSALALVAASDTANSAYNAFEDARAGGATFAEGAQSAGLTVQTIPAVDR 418

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G    G+ VA  P  ++ L  VF + +P   +  +      Y++  +    PARDR L+
Sbjct: 419 EGNGPDGQPVAEQPSAQEFLPGVF-ETEPGLDNVPINFQSNGYVFYDVISIDPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V  DWK  +T  +++ +A Q+  E  + G++  D     GA   T   ++R    
Sbjct: 478 EVRDRVLADWKAAETDRQLAERAEQMKTEL-QAGRSMADAAAAAGAEARTAAAVSRQSGV 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI-----SYLT 595
           ++  G  G++  FSG    V         S +V +V   +V P  +    +     S +T
Sbjct: 537 SE-LGQAGVNAAFSGGTGTVATAAGREAGSQIVLRVV--EVAPPADPAANVAANERSQMT 593

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            M+  D+L++ ++ L++  ++ VH   I+R
Sbjct: 594 GMLENDILETYVSLLQNDTAIAVHPAGIER 623


>gi|90423968|ref|YP_532338.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
 gi|90105982|gb|ABD88019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
          Length = 662

 Score =  276 bits (706), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 177/631 (28%), Positives = 299/631 (47%), Gaps = 15/631 (2%)

Query: 1   MLEIIRKASRTWVAKIFLV----VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IRKAS  WV K  ++    VL + F +WG++D +F   G ST+  +G  ++    F
Sbjct: 30  MLRGIRKASSNWVGKTIMIIVMSVLILSFAVWGIAD-IFKGFGQSTLAKIGSTEISTEQF 88

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              + + L  I ++ G  +  ++AR+ G+D+++L   V+ A LD+    IGL        
Sbjct: 89  RQLYTERLQQIGRQFGRPLTQDQARAFGIDRQVLQQAVAEAALDEDARRIGLGQSDAETM 148

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G +  F    F   + + G  E+ YI    K+  R  + G     + P  
Sbjct: 149 RTIVSDPNFRGTNGGFDRARFAQAIRQFGYTEQRYIAEQRKVSLRRQIAGTLTAELEPPK 208

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            LLD   RF  E RS+DY+ L+  H   IA PS  VL  ++  +K  +RAPEY++IS++ 
Sbjct: 209 TLLDALTRFQNEQRSIDYVKLDANHAGTIAPPSPEVLAAYYADHKTQFRAPEYRKISFVA 268

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K   +S+++ +  YE  ++K+ +PE R + Q+VFPN +EA  A   +  G  F
Sbjct: 269 LTPEAVAKWTTVSDEDAKKVYEARRDKFSTPERRQITQIVFPNAEEAQAARAKITGGLSF 328

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             LA+E+G S +D  LG  SK  I D ++AD+ F+L    D +  I G FG  +  V  I
Sbjct: 329 DDLAKERGLSPADADLGLVSKAEILDPAVADAAFALPAN-DVSQPIPGRFGVTLLKVGKI 387

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P    SF+ V   +   + I KA   + + + ++E+    G S+ E +++  + ++ + 
Sbjct: 388 EPGSQQSFESVAPALKRDIAIDKARASIADLHNKMEDARGGGASVVEAAQKLGLAAVTIE 447

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            +D +G+   G    AIP    L    F  D  +  D+      G Y+W  +    P+R+
Sbjct: 448 ALDRSGRAPDGNPT-AIPQGLDLASAAFSSD--VGVDNDALAFGGGYVWFDVLGVTPSRE 504

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R LEEV   V+  W+  + +  +  +A  +V +    GK   D+    G    T     R
Sbjct: 505 RSLEEVKPQVEARWRDEQISTRLRDQATDMVQKVEAGGK-LADVAAAAGLKTETATAFKR 563

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFIS 592
            D          +   F    + V   P  +G  ++VF+VT+  V PV    ++  K   
Sbjct: 564 -DGSVAGLPSSVVEAAFRTAKDGVGQAPGLSGGEWIVFRVTDVSVPPVDLASEDAAKLKD 622

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
            L + +  +LL   +A L+++    ++++ +
Sbjct: 623 TLQRRLADELLAQYVARLETEIGTKINESAV 653


>gi|319783646|ref|YP_004143122.1| peptidyl-prolyl cis-trans isomerase D [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169534|gb|ADV13072.1| peptidyl-prolyl cis-trans isomerase D [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 630

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 179/623 (28%), Positives = 320/623 (51%), Gaps = 9/623 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-VSGSSTVVSVGRQKVPFSSFINS 59
           ML I+R A+ TWVAK  LV+L + FL+WG+S  L   ++G  +V++ G  KV  + +  +
Sbjct: 1   MLGILRSAAGTWVAKGLLVLLVLSFLVWGVSGRLMGGLAGHDSVITAGGTKVSINEYRLA 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           + ++L ++SQ+ G  ++ E+A+++G+D ++L  LVSGA LD+    +GL     R+    
Sbjct: 61  YDRQLAVMSQQFGQRLSHEQAKALGVDNQVLAQLVSGAVLDEQARKLGLGLSKDRLAELT 120

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F G   +F    F   L + G+  ++Y+ +  ++  R  +V     G++  +   
Sbjct: 121 REDPAFKGPGGQFDRRTFEYMLQQIGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDTFF 180

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                +  E+R++DY+ L    V  IA PS++VL+ +FE  K  Y APEY++ SY+  + 
Sbjct: 181 KAVALYRGEDRTIDYLTLPKALVEPIAAPSDSVLSAYFEANKKTYAAPEYRKFSYVRLEP 240

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +      +++ ++  +Y KNK +Y +PE+RT+EQLVF     A  A  SLK G  F +L
Sbjct: 241 VDIMDPTAVTDQQVSDDYNKNKARYTTPELRTIEQLVFKTPDAAKAALDSLKAGATFDKL 300

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
              +GK+ +D  LG+ +K+ I D ++AD+ F+L    + + V+ G+FG V+  V+ IKP 
Sbjct: 301 VTAEGKTPADTLLGTLAKDKIADKAVADAAFAL-NANEVSQVVQGAFGPVLLRVTEIKPE 359

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
                 EV   I   + + +AS  + +     ++  A G+S+ + + + K+  + +  +D
Sbjct: 360 VVKPLAEVSDQIRKDLALGEASRILLDVRDNYDDTRAAGSSLADAAAKLKLKVVTIDAID 419

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
            +G       V  +P   +L+  VF   +P +++  +   D  +++ ++    PARDR L
Sbjct: 420 RSGLRPDASIVKDLPQSPELIKAVFDA-EPNTENDALTTADNGFVFYEVASITPARDRTL 478

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           +EV   V  DW   +T++ +++KA++L     K G     I   L     T   + R + 
Sbjct: 479 DEVRQKVVADWTAAETSKRLAAKADELEKRL-KAGATLDVIASELKLEKQTKRGVKR-EA 536

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISYLT 595
           ++  FG +G + +F          P   G   +++KV      +        D      T
Sbjct: 537 DDVDFGKEGAAAMFGVGEGGTGLIPSPTGDGQILYKVAEVFEPAGADASSVPDDAQKSFT 596

Query: 596 QMMNKDLLDSVIAYLKSQYSVTV 618
             M+ DLLD ++A L++QY V V
Sbjct: 597 SGMSDDLLDQLVAQLQTQYDVRV 619


>gi|239832027|ref|ZP_04680356.1| rotamase family protein [Ochrobactrum intermedium LMG 3301]
 gi|239824294|gb|EEQ95862.1| rotamase family protein [Ochrobactrum intermedium LMG 3301]
          Length = 628

 Score =  270 bits (689), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 185/637 (29%), Positives = 320/637 (50%), Gaps = 21/637 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++WVAK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWVAKLLLGLLVLSFAIWGISDVFRGGLSGNAALTAGGSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED--IGLEADH-GRVWG 117
           +Q++  +SQ+    +  E+A+++G++ ++L  L +G  LD+   +  +GL  D   R+ G
Sbjct: 61  EQQMMRLSQQFRQRLTREQAKTLGVENQVLAQLAAGVVLDEGARNMQLGLSKDGIARLTG 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           E    P FH     F+   F + L + GI  ++Y+D+  K+  R  +V     G++  + 
Sbjct: 121 E---DPAFHDASGNFNRAQFDAVLRQSGIRAQDYLDNRAKVARRQQIVEAATDGIKLPDA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L     +  E RSVDY+ +      A+  PS+  L  +FE  KD Y+APEY++++Y+  
Sbjct: 178 ALKALALYQGETRSVDYVTIQAEKADAVPAPSDDALKTYFEARKDEYKAPEYRKVTYVKL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           +  +      ++ DE+   YEKNK+++ + E R +EQL F +   A+ A Q +  G  F+
Sbjct: 238 EPADIADPSAVTQDEISEYYEKNKDRFGTIEKRAIEQLNFADDAAAEAAQQKIAAGTSFV 297

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            + +EQGK+  D+ LG+F K  IPD ++AD+ F+LA+ G  +PV+ GSFG VI  V+ I+
Sbjct: 298 DIGKEQGKTEDDLKLGTFEKSAIPDQAVADAAFALAENG-VSPVVKGSFGPVILRVTQIE 356

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           P+      EV+ +I   +    A+  +   +   E+  + G SM +++++  + ++ +  
Sbjct: 357 PAHVKPLAEVEGEIRTTLANNIAASSISGIHDSYEQERSDGASMADVAKKLSLKTVTVEA 416

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           VD  G D  G  V  +P  E LL   F  D     D  + + +  Y+W Q+    PARDR
Sbjct: 417 VDAGGNDPSGNPV-QLPNSEALLAAAFQADQGFDND-ALTMGNVGYLWYQVDGITPARDR 474

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE---GKNFRDIGKNLGASLLTTNQI 534
            L+EV   V   WK     EE   + NQ V E  K    G     I   LG    T   +
Sbjct: 475 TLDEVKDKVVAAWK----GEEAVKRLNQRVEELKKRLDGGATLDTIASELGVEKQTKRGV 530

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKF 590
            R  N+    G    +Q+F G           +  + ++FKVT     +  GP    ++ 
Sbjct: 531 VRTTNDAD-IGTAAAAQIFRGANGFTGSAAAPSDDAQILFKVTEVTEPAAAGPEAIPEQQ 589

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
             Y    ++ D+L+ ++  L+ QY V ++  +I   L
Sbjct: 590 QKYQATSLSDDILEQLVGELQKQYPVKINQTVINNAL 626


>gi|218461733|ref|ZP_03501824.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli Kim 5]
          Length = 432

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 149/438 (34%), Positives = 247/438 (56%), Gaps = 15/438 (3%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I + +YI   +K+  R+ +V     G      L+D  K +  E+RSVDY++L N ++  I
Sbjct: 1   IRQDDYIQERSKVAVRSQIVDAVSNGFTAPKTLVDAMKLYGGESRSVDYLLLTNANIEPI 60

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
             P++ VL  WFE  K  YRAPEY++I+Y+     +      +++D+++  ++K K+ Y 
Sbjct: 61  KAPADDVLASWFEGVKQRYRAPEYRKIAYLKLQPADIADAATVTDDQVREAFDKGKDSYR 120

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
           +PE RT+EQL F ++  A  A  +LK G  F QL  +QGK+ SD+ LG F+K+ +PD ++
Sbjct: 121 TPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLVSDQGKTASDVLLGEFTKDKVPDQAV 180

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
           A++ F+++K G  TPV+ GSFG VI  ++NIK     +F EVK++I  Q+ ++ AS++V 
Sbjct: 181 AEAAFAVSKDGGTTPVVDGSFGPVILRITNIKAETVKNFDEVKEEIRKQLALSNASQEVI 240

Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF- 444
             + ++E+  A G ++++I+ + K+ ++ +  VD  G D  GKEV  IP K+QLL   F 
Sbjct: 241 NVHDQIEDLRAGGATLEDIASQLKLNAVTIDAVDATGADKDGKEVKDIPVKQQLLGEAFK 300

Query: 445 ---GKDDPLSKDHTVALPDGS--YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
              G D P        LP G+  Y+W  ++E  P RDR + EV     +DW   +   E+
Sbjct: 301 TEVGVDAP-------PLPIGNDGYVWFNVREITPDRDRPIAEVREKAVEDWTAEQQKAEL 353

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
           + KA++L  +  K G    DI   LG ++ + + I R   ++   G  G+   FSGP++ 
Sbjct: 354 AKKADELKAQAQK-GTALADIATPLGIAVESKSGITRS-TDDPVLGRAGVKAAFSGPLDT 411

Query: 560 VKCFPIENGLSYVVFKVT 577
           V      +  + ++ KVT
Sbjct: 412 VASAVGADPSTQILMKVT 429


>gi|153009380|ref|YP_001370595.1| rotamase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561268|gb|ABS14766.1| rotamase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 628

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 188/637 (29%), Positives = 319/637 (50%), Gaps = 21/637 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++WVAK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWVAKLLLGLLVLSFAIWGISDVFRGGLSGNAALTAGGSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED--IGLEADH-GRVWG 117
           +Q++  +SQ+    +  E+A+++G++ ++L  L +G  LD+   +  +GL  D   R+ G
Sbjct: 61  EQQMMRLSQQFRQRLTREQAKTLGVENQVLAQLAAGVVLDEGARNMQLGLSKDGIARLTG 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           E    P FH     F+   F + L + GI  ++Y+D+  K+  R  +V     G++  N 
Sbjct: 121 E---DPAFHDASGNFNRAQFDAVLRQSGIRAQDYLDNRAKVARRQQIVEAATDGIKLPNT 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L     +  E RSVDY+ +      A+  PS   L  +F+ +KD Y+APEY++I+Y+  
Sbjct: 178 ALKALALYQGETRSVDYVTIQAEKADAVPAPSEDALKTYFDAHKDEYKAPEYRKITYVKL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           +  +      ++ DE+   YEKNK+++ + E RT+EQL F +   A+ A Q +  G  FI
Sbjct: 238 EPTDIADPSAVTQDEINEYYEKNKDRFSTIEKRTIEQLNFADDAAAEAAQQKIAAGTSFI 297

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            + +EQGK+  D+ LG+F K  IPD ++AD+ F+LA+ G  +PV+ G FG VI  V+ I+
Sbjct: 298 DIGKEQGKTEDDLKLGTFEKSAIPDQAVADAAFALAENG-VSPVVKGGFGPVILRVTQIE 356

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           P+      EV+ +I   +    A+  +   +   E+  + G SM +++++  + S+ +  
Sbjct: 357 PAHVKPQAEVEGEIRTTLANNIAASSISGIHDSYEQDRSDGASMADVAKKLSLKSVIVEA 416

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           VD  G D  G  V  +P  E LL   F  D     D  + + +  Y+W Q+    PARDR
Sbjct: 417 VDAEGNDPSGNPV-QLPNSEALLSAAFQADQGFDND-ALTMGNIGYLWYQVDGVTPARDR 474

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE---GKNFRDIGKNLGASLLTTNQI 534
            L+EV   V   WK     EE   + NQ V E  K    G     I    G    T   I
Sbjct: 475 TLDEVKDKVAAAWK----GEEAVKRLNQRVDELQKRLDGGATLDAIATEQGVEKQTKRGI 530

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKF 590
            R  N+    G    +Q+F G           +  + ++FKV      +  GP    ++ 
Sbjct: 531 VRTTNDAD-IGTAAAAQIFRGANGFTGSAAAPSDDAQILFKVVEVTEPAGAGPEAIPEQQ 589

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
             YL   ++ D+L+ ++  L+ QY V ++  +I   L
Sbjct: 590 QKYLATSLSDDVLEQLVGELQKQYPVKINQTVINNAL 626


>gi|158423833|ref|YP_001525125.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Azorhizobium caulinodans ORS 571]
 gi|158330722|dbj|BAF88207.1| PPIC-type PPIASE domain protein [Azorhizobium caulinodans ORS 571]
          Length = 638

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 162/628 (25%), Positives = 311/628 (49%), Gaps = 6/628 (0%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           +L+ +RK +   +AK+FL+VL V F++WG+S  +F+   + TV  +G  ++   ++   +
Sbjct: 10  VLQNLRKGASGLIAKVFLLVLTVSFVLWGIS-GVFTNYSTGTVAEIGGTQISTDAYRQQY 68

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             ++  I ++ G  +  ++AR+ G D+++L+ +++ ATLD+    +GL      +   I 
Sbjct: 69  LDQIQRIGRQAGRAITPDQARAFGFDRQVLNQMITEATLDEAARKLGLGMSDALIADSIR 128

Query: 121 RSPLFHGKD-NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            +P         F    F   L   G+ E+ ++    K + R  ++   +GG R   +L 
Sbjct: 129 DNPALRPPGATAFDPAYFQQLLQANGLTEQRFLASERKRVLRQQLI-ESLGGARAPEVLK 187

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                F  E R+V Y+ + +  VPA A P++  L  +++ +K  +RAPEY++++ ++   
Sbjct: 188 TAVHSFENEERAVSYLDVTSSSVPAPAAPTDEQLKAYYDGHKVVFRAPEYRKLTLLVLTP 247

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                 I+IS+ + +A Y++N  ++ +PE R V+Q+VFP++ +A  A   +K G  F  +
Sbjct: 248 ATLAPWIQISDADAKAAYDRNAARFGTPEQRDVQQIVFPSEADAKAALDKIKGGTSFADI 307

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           A+ +G S  D +LG  +K  I D  +AD+ F+L   G   PV  G FGY + HV+ I P+
Sbjct: 308 AKARGLSDKDTNLGLVAKSAIIDPKVADAAFALPADGTSDPV-QGRFGYALVHVTTIVPA 366

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
               F EV+  +   + + +A  ++ + +  +E+  + G S+ E +++  +    +  VD
Sbjct: 367 TVKPFAEVEAGLRRDLALERARRELLDKHDAIEDERSSGASLSETAQKLGLTPEVVDAVD 426

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
            +G++  G EV  IP +  +L   F     +  D      +G Y+W  + E  P+R+R  
Sbjct: 427 RSGREPSGAEVTDIPDRVNVLSAAFSSRPGVDNDPIQLAQNGGYVWFDVNEVTPSRERPF 486

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           +EV   V   W   +    V +KA  L+ E  + GK+  D+    G  + T + + R   
Sbjct: 487 DEVREQVASRWSEDEVVRAVEAKAKGLLTEL-EAGKSMADVASANGLEVKTASGLKRGRA 545

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
           E  F   + +++VF   +              +VF+VT  +  P     +  + L Q + 
Sbjct: 546 EGDFT-TEAVAKVFGVALNGYGVALGTANAEQLVFQVTKVESPPSANDIRIDNQLQQQVE 604

Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            D+L   +  L+ Q  +T++   +Q+ +
Sbjct: 605 NDILQQYLTALQGQIGLTINQRAVQQAV 632


>gi|146341037|ref|YP_001206085.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
 gi|146193843|emb|CAL77860.1| Putative Peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
          Length = 636

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 175/638 (27%), Positives = 308/638 (48%), Gaps = 15/638 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  +RKAS  W+ K  + V    L V F IWG++D +F   G ST  +VGR ++  + F
Sbjct: 1   MLRGLRKASSNWLGKTIMAVVMGVLIVSFGIWGIAD-IFRGFGQSTAATVGRTEISINEF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              +   L  I ++IG  + +++AR  GLD+ +L   ++ A LD+    IGL        
Sbjct: 60  RQIYTDRLQQIGRQIGRPLTTDQARMFGLDRSVLQQTIAEAALDEQARRIGLGQSDAETM 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G +  F    F + +   G  E+ Y+    +   R  + G    G+ PSN
Sbjct: 120 RVILSDPNFKGPNGAFDPQRFQAIIRNFGFTEQRYLADQRRQSLRRQITGTIAAGLEPSN 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            LLD   RF  E RS+DY+ L+      I  P+  VL  +F+++K  ++APEY++IS++L
Sbjct: 180 TLLDALSRFQNEQRSIDYVKLDAAQAGTIETPAPEVLATYFDEHKAQFKAPEYRKISFVL 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
               E  K   +S+++ +  +++ K    +PE R V+Q+ FP  +EA  A   +  G+  
Sbjct: 240 VTPEEIGKWTTVSDEDARKVFDQRKALMGTPEKRQVQQMTFPTMEEAQAARARIASGEVT 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F +LA+E+  + +D+ LG  +K  I D ++AD+ FSL   G+ +  + G+F   +  VS 
Sbjct: 300 FDELAKERNLNPADLDLGLVTKSAILDPAVADTAFSL-PTGEVSQPVKGAFNVALVKVSA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+P    +++ V  DI  ++   +A  +V     ++E+    G S+ E +++  + ++ +
Sbjct: 359 IQPGQEPAYESVAADIKKEIAAERAKSEVATLRDKMEDERGGGASVAEAAKKLGLNAVTV 418

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
             VD +GK   G+ V  IP    ++ + F  D  +  D+      G Y+W ++    P R
Sbjct: 419 EAVDRSGKQPDGQPVPNIPLGLDVVAQAFASD--VGVDNEPISFRGGYVWFEVLGITPPR 476

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
           +R L+EV   V   W+  + A+ +  +A +LV + + EG    D    LG  + T +   
Sbjct: 477 ERTLDEVKDQVAAKWRDDEIAKRLRDRATELVKKLN-EGGKLADEAAALGVKVETASAFK 535

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
           R D          I+  F    + V     + G  ++VF+VT+     V    + +  L 
Sbjct: 536 R-DASLPGVPTGAITATFRTAKDGVGQTEADGGRQWIVFRVTDIVDPKVDLASEDVKKLK 594

Query: 596 QMMNKDLLD----SVIAYLKSQYSVTVHDNLIQRYLDG 629
             + + L D    S +  L+     T+++  + + + G
Sbjct: 595 DQLQRALADEQGTSYVLKLEKDIGTTINEAAVAQVVGG 632


>gi|148255838|ref|YP_001240423.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1]
 gi|146408011|gb|ABQ36517.1| Putative Peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1]
          Length = 636

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 176/638 (27%), Positives = 307/638 (48%), Gaps = 15/638 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  +RKAS  W+ K  + V    L V F IWG++D +F   G ST  +VGR ++  + F
Sbjct: 1   MLRGLRKASSNWLGKTIMAVVMGVLIVSFGIWGIAD-IFRGFGQSTAATVGRTEISINEF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              +   L  I +++G  +  E+AR  GLD+ +L   ++ A LD+    +GL        
Sbjct: 60  RQIYTDRLQQIGRQLGRPLTQEQARMFGLDRTVLQQTIAEAALDEDARRLGLGQSDAETM 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G +  F    F + +   G  E+ Y+    ++  R  + G    G+ P N
Sbjct: 120 RVILSDPNFKGPNGAFDPQRFQAIIRNFGFTEQRYLADQRRVSLRRQITGTIAAGLEPPN 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +LD   RF  E RS+DY+ L+      I  PS  VL  +F+++K  ++APEY++IS++L
Sbjct: 180 TMLDALSRFQNEQRSIDYLKLDAAQAGPIDAPSPEVLASYFDEHKAQFKAPEYRKISFVL 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
               +  K  ++S+++ +  +++ K +  +PE R V+Q+ FP  +EA  A   +  G+  
Sbjct: 240 VTPEDIGKWTDVSDEDARKLFDQRKAQMGTPEKRQVQQMTFPTMEEAQAARARIASGEVS 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F +LA+E+  + +D+ LG  +K  I D ++AD  FSL   G+ +  + G+F   +  VS 
Sbjct: 300 FDELAKERNLNPADLDLGLVTKTAILDPAVADMAFSL-PTGEVSQPVKGAFNVALVKVSA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+P    +++ V  DI  ++   +A  +V     ++E+    G S+ E +++  + +I +
Sbjct: 359 IQPGQQPAYESVATDIKKEIAADRAKSQVANLRDKMEDERGGGASVAEAAKKLGLNAITV 418

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
             VD +GK   G+ V  IP    ++ + F  D  +  D+      G Y+W ++    P R
Sbjct: 419 EAVDRSGKQPDGQPVPNIPLGLDVVAQAFNSD--VGVDNEPISFRGGYVWYEVLGITPPR 476

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
           DR L+EV   V   W+  + A ++ +KA  LV + + EG    D    LG  + T +   
Sbjct: 477 DRSLDEVKDQVAAKWRDDEVAAKLRAKATDLVKKLN-EGGKLADEAAMLGVKVETASAFK 535

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
           R D          I   F    + V     E G  ++VF+VT+     V    + I  L 
Sbjct: 536 R-DATVPGVPAGAIVAAFRTAKDGVGQTEAEGGRQWIVFRVTDITEPKVDLASEDIKKLK 594

Query: 596 QMMNKDLLD----SVIAYLKSQYSVTVHDNLIQRYLDG 629
             + + L D    + +  L+     T+++  + + + G
Sbjct: 595 DQLQRALADEQGTAYVMKLEKDIGTTINEAAVAQVVGG 632


>gi|27379919|ref|NP_771448.1| peptidyl-prolyl cis-trans isomerse [Bradyrhizobium japonicum USDA
           110]
 gi|27353072|dbj|BAC50073.1| blr4808 [Bradyrhizobium japonicum USDA 110]
          Length = 632

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 162/582 (27%), Positives = 289/582 (49%), Gaps = 11/582 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  +RKAS  W+ K  + V    L + F IWG++D +F   G STV  +GR ++  + F
Sbjct: 1   MLRGMRKASSNWLGKTIMAVVMGVLIISFGIWGIAD-IFRGFGQSTVAKIGRTEISLNEF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              +   L  IS++ G  +  ++AR+ GLD+++L   ++ A LD+    +GL     ++ 
Sbjct: 60  RQIYTDRLQQISRQFGRPLTPDQARAFGLDRQVLQQTIAEAALDEEARRLGLGQSDDQIR 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G    F  + F + +   G  E+ Y+    K+  R  + G    G+ P  
Sbjct: 120 QVIMNDPNFKGVGGSFDANRFQAVIRNFGYTEQRYVSEQRKVSLRRQLTGTIGAGLEPPK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            ++D   RF  E R++++  L+      I  PS   L  +FE +K  +RAPEY++I++++
Sbjct: 180 AMIDVLTRFQNEQRAIEFARLDAAQAGTIDAPSPEALAAYFEDHKVQFRAPEYRKIAFVV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
               E  K  E+S+++ +  +++ K++  +PE R + Q+VFPN  EA  A + L  G  F
Sbjct: 240 ISPEEIGKWSEVSDEDAKKLFDQRKDRLGTPEKRQIHQIVFPNAAEAQTARERLAGGMSF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             L +E+G S SD+ LG  +K  + D ++ D+ F+L   G+ +  I G  G  I  V  I
Sbjct: 300 EDLGKERGLSASDVDLGLVTKSSL-DPAVGDAAFAL-PAGEISQPIQGRLGTAIVKVDKI 357

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P    ++  +  DI  ++   +A  KV +   ++E+    G S+ + +++  + ++ + 
Sbjct: 358 EPGVEANYASLVGDIKREIATERARVKVADLRDKMEDERGGGASVIDAAQKLGLTAVTID 417

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            VD +G+   G+ VA IP    ++ + F  D  +  D+      G Y+W  +    P+RD
Sbjct: 418 AVDRSGRAPNGQPVANIPPGLDVVSQAFNTD--VGVDNDAISFKGGYVWYDVLAITPSRD 475

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L+EV   V+  W+  + A ++ +KA ++V +    GK   D    +GA + T     R
Sbjct: 476 RNLDEVRDQVEARWRQDQIATKLKAKATEMVQKLEAGGK-LADEAAAVGAKVETATGFKR 534

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
            D+         ++  F    + V   P+  G   +VF+VT+
Sbjct: 535 -DDSPAGVPATVVAAAFRTAKDGVGQTPVSGGSEVIVFRVTD 575


>gi|154253607|ref|YP_001414431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157557|gb|ABS64774.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum
           lavamentivorans DS-1]
          Length = 631

 Score =  260 bits (664), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 171/631 (27%), Positives = 316/631 (50%), Gaps = 14/631 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ +  WVAK+ + +L + F +WG++D +F+  G  TV  VG QK+  +++    
Sbjct: 1   MLDSLRRNASGWVAKVLIGLLALSFAVWGIAD-IFTGFGGDTVAEVGDQKIDAATYQVEL 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E+   SQ++G  ++ ++AR  G+D+  L  L+S A LD    D+GL      V  +I 
Sbjct: 60  RNEMNQFSQRLGQPLSLDQARQFGIDRAALSRLISLAALDGAASDLGLAVGDEAVGIDIT 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P   G   +F  D+F   L + GI+E+ +I+   + +SR  V+ +   G+     L++
Sbjct: 120 TDPNLQGPFGRFDRDLFRQSLQQNGISEERFIEQRRRAMSRKQVIEVIQVGVAAPEALIE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              RF  E R   Y++L    V  IADP    + +++E     +  PE +  S ++ +  
Sbjct: 180 MVSRFQEETRVAGYVILPQSLVGEIADPDEETVQKFYEAGASAFTLPETRDFSIMVLEPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +  + + +S ++LQA YE+ + +Y  PE R V Q+ F +++EA+EA   L+ G+    + 
Sbjct: 240 DVTRTMAVSEEDLQAAYEQRRGEYDVPERRDVHQITFASEEEANEALTKLRGGENVETVV 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +  G ++ D+ LG  S++ +    LAD+ FSL   G   PV  G  G+ I HV+ I+P  
Sbjct: 300 KGLGLTMKDVDLGKVSRDDMLSPELADAAFSLEGTGYSEPV-RGPLGWSILHVTGIEPGK 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             ++++VK+++   + +  A +++ +    +E+  A G  + ++++R  +    +  +  
Sbjct: 359 PSTYEDVKEELRAAIELELARDQIYDIQNTIEDARAGGEPLADVAKRYNLTVRSIDGITA 418

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG--SYMWVQIKESIPARDRK 478
            GK   G  V  +P    LL  V+   +    D    L  G   Y WV+I    PA  + 
Sbjct: 419 DGKTRNGDTV-ELPELPDLLNTVY---ENQQGDQIPPLDSGKDGYYWVEIDAVNPAELQP 474

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
           L+EV   V   WK  K A+++ + A  LV E    G++F  I    G S+L+T  + R  
Sbjct: 475 LDEVRDRVVSIWKQQKRADDLEALATSLV-ERGNAGESFEKIAAEYGRSVLSTPPLQRY- 532

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQM 597
            +N  F    ++++F+ P       P+  G S +V +V + +   +    DK+    T +
Sbjct: 533 AQNDTFSRTAVTRLFAAPEGGFTFGPVGLGDSLIVMQVKDVRSPQLDANSDKYKETRTTL 592

Query: 598 MN---KDLLDSVIAYLKSQYSVTVHDNLIQR 625
           ++    D+L + +   + +  V V++ L Q+
Sbjct: 593 VDAIQADMLQTFVVGYQQELGVEVNNTLFQQ 623


>gi|220925415|ref|YP_002500717.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           nodulans ORS 2060]
 gi|219950022|gb|ACL60414.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           nodulans ORS 2060]
          Length = 632

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 171/642 (26%), Positives = 328/642 (51%), Gaps = 23/642 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF----VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+  R AS++W+ KI + V+F        I+G+ D +F  SGSSTV +VG  K+   + 
Sbjct: 1   MLQGFRAASQSWLGKIVITVVFGLLIAGLAIFGIGD-IFRGSGSSTVATVGSTKISAEAV 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            ++++ ++  +++++   +  ++AR++GLD+++L  LV+ ATLDQ   D+GL      V 
Sbjct: 60  RSAYQNQIQRLARQVRRPITPDQARALGLDREVLSALVTEATLDQKTRDLGLRVSDDTVI 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G +  F   +F   L + G++E  ++     + +R  +       + P  
Sbjct: 120 RLIKEEPAFKGANGAFDIALFNDTLRQAGLSEAAFVQEQRAVAARLQLAEAITADL-PVP 178

Query: 177 LLLDQA-KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           L + +A  R+  E R+  +I+L       I  P++  +  ++++++  +RAPEY+ ++ +
Sbjct: 179 LAVREAIHRYTAERRAAAFILLPESAAGEIPAPTDEEVKTYYDEHRSAFRAPEYRSVNLL 238

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           + D     K   +++ E +A Y+ +K +Y +PE RT++Q+VFPN+ +A  A   ++ G+ 
Sbjct: 239 VLDPATLAKPDAVTDAEARARYDADKSRYGTPERRTIQQIVFPNEADAAAALARIRSGEA 298

Query: 296 -FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            F  +A E+G     + LG+FS+  + D ++AD+ F L ++G  +  + G FG V+  V+
Sbjct: 299 PFESIAGERGLDPKSLDLGTFSRSELFDPAVADAAFGL-QQGVVSEPVKGRFGTVLLRVT 357

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
            I+P     ++EV   I  ++   +A + +++ +  +E+  A    + EI+R  ++  I 
Sbjct: 358 AIEPGSVKPYEEVAGQIRTEIARERAGDNLEKVHDAIEDQRAGAKPLAEIARERELPLIT 417

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGSYMWVQIKE 470
           +  VD  G+D +GK V  +P K+ +L  +F    G D    +  +     G Y+W  I +
Sbjct: 418 VASVDAQGRDPQGKPVEGLPDKDAVLPALFRAEMGADSEALRTRS-----GGYVWYDIVK 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             PA DR L EV  DV   WK  +    +S+KA +      K G+    +  +LG    T
Sbjct: 473 VDPAHDRPLPEVRDDVVAQWKAEEVERRLSAKAREAAERLDK-GEAIEAVASSLGLEAKT 531

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ--EKD 588
            + + R   ++     + I ++F+ PV+        + +  V FKVT++ V P+    + 
Sbjct: 532 ASDLARGRAKDGLT-PESIGRIFATPVDKTGSASAGDKV-RVAFKVTSATVPPLAAGSQG 589

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
                    +  D+L   IA  + +  V+++++  +R + GE
Sbjct: 590 NVEQQFRSALADDILAQYIADARKEAGVSINESAFRRAIGGE 631


>gi|92117281|ref|YP_577010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           hamburgensis X14]
 gi|91800175|gb|ABE62550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           hamburgensis X14]
          Length = 635

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 167/627 (26%), Positives = 308/627 (49%), Gaps = 13/627 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IR AS  W+ KI + +    L V F IWG++D +F   G S + +VG  ++    F
Sbjct: 1   MLRGIRNASSNWLGKILMSIVMGLLIVAFGIWGIAD-IFHGFGQSNLATVGSTEISTEQF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              +   L  ++++ G  ++ ++ R++GLD+++L  +++ A LD+     GL A    + 
Sbjct: 60  RQIYNDRLQQLARQFGRSLSPDQVRALGLDRQVLQQVIAEAALDEDARRKGLNASDDEIR 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            +I   P F G ++ F    F   + + G  E+ Y+        R ++ G    G+ PS 
Sbjct: 120 RQIMSDPNFKGANDAFDPARFAGLIRQMGYTEQRYVTEQRHTTLRREIAGTVAAGVEPSK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            LL+    F  E R++DY+ L       I  P+   L  +F+ +K  +RAPE+++I++++
Sbjct: 180 TLLEMLNHFQNEQRTIDYVKLGVPQAGTIDPPTPEQLASYFDAHKVQFRAPEFRKIAFVV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K   +S+++ +  YE+ K+K  +PE R + Q+VFPN  EA  A   +  G  F
Sbjct: 240 MTPEGIAKTTAVSDEDAKKAYEQQKDKLSTPEKRQLWQIVFPNVTEAQAARSKIAGGASF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             +A+E+  + SD+ LG  SK  I D ++A++ FSL K  + +  I G FG  +  V  I
Sbjct: 300 DDIAKERNLAASDVDLGIISKSEIIDPAVAEAAFSL-KADEVSQPIQGRFGVALVKVGKI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P    ++  V   + + + + +A  +V + + ++E+    G S+ E +++  + ++ + 
Sbjct: 359 EPGNQPTYDSVAAKLKHDIAVDRARAEVNDLHNKMEDERGGGASVLEAAKKLGLTAVTID 418

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            VD +G+   GK V  IP +  L+ + F  D  +  + T+ + D  ++W  +    P+RD
Sbjct: 419 AVDRSGRTPDGKPVTGIPPQVDLIAQAFASDVGVD-NETLQVGDNGFVWFDVLGVTPSRD 477

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L+EV   V+  W+  + +  + +KA  +V +  + GK   D    LG  +   + + R
Sbjct: 478 RTLDEVKDKVETGWRDEQISSRLMTKATDMVHKLDQGGK-LADEAAGLGLKVENASALKR 536

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFIS 592
            D          I+ VF          P   G  +VVF+VT+ KV  +     E  K   
Sbjct: 537 -DATAAGLPAAVIAAVFRTAKGGAGQAPGAGGEEWVVFRVTDVKVPSLDLASDEMKKLKD 595

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVH 619
            + + ++ + +   IA L+++   TV+
Sbjct: 596 SIQRSLSDEDIGQYIARLETEIGTTVN 622


>gi|115524599|ref|YP_781510.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
 gi|115518546|gb|ABJ06530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
          Length = 633

 Score =  256 bits (654), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 172/631 (27%), Positives = 299/631 (47%), Gaps = 15/631 (2%)

Query: 1   MLEIIRKASRTWVAKIFLV----VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IRKAS  W+ KI L     VL + F +WG+ D +F   G ST  ++G  ++    F
Sbjct: 1   MLRGIRKASSNWIGKIILSTVMGVLILSFAVWGIGD-IFKGFGRSTAATIGSTEISTEQF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              + + L  I ++ G  +  ++AR+ G+D+++L   V+ A LD+     GL        
Sbjct: 60  RQLYTERLQQIGRQFGKPLTPDQARAFGIDRQVLQQAVAEAALDEDARRKGLGQSDAETM 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G   KF    F   L + G  E+ YI    ++  R  + G    G+ P  
Sbjct: 120 RTILSDPNFKGTAGKFDPARFGQVLRQFGYTEQRYIAEQRRVSLRRQIAGTLTAGLIPPK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L+D   R+  E R++DY+ L+  H   I  PS   L  +F  +K+ +RAPEY++ S++ 
Sbjct: 180 TLIDALGRYQNEQRTIDYVKLDAAHAGPIEPPSPEALAAYFADHKNQFRAPEYRKASFVA 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K   +S+++ +  YE  +EK+ +PE R V Q+VFP   +A  A   +  G  F
Sbjct: 240 LTPDAVAKWTTVSDEDAKKAYEDRREKFATPERRQVSQIVFPTSADAQAARSKIDGGASF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             +A+E+G S +DI LG  +K  I D ++A + F+L       PV +G FG  +A V  I
Sbjct: 300 EDIAKERGLSATDIDLGLVAKAGILDPAVAAAAFALPANQVSQPV-NGRFGVALAKVGAI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P    SF+ V  D+   + I +A   + + + ++E+    G S+ E +++  + ++ + 
Sbjct: 359 EPGSQQSFESVAADLKRDIAIERARASISDLHNKMEDDRGGGASVVEAAQKLGLAAVTIE 418

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            VD +G+   G   A IP   +L+  +F  D  +  D+      G Y+W  +    P+R+
Sbjct: 419 AVDRSGRTSDGT-AAPIPQGLELVPALFSSD--VGVDNDALAFGGGYVWFDVLGITPSRE 475

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L+EV   V+  W+  +    + S+A ++V + +  G +  D     G  + T     R
Sbjct: 476 RSLDEVKPQVEARWRDEQIGNRLRSQATEMVQQVNA-GTSLADAAAKAGLKVETAASFKR 534

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFIS 592
            D          +   F    + V   P   G  ++V++VT+  V P+     E  +   
Sbjct: 535 -DATVAGLPPAAVEAAFRTAKDGVGQAPGAAGGEWIVYRVTDVAVPPIDPNAPEFKQLRD 593

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
            L + +N + L   +A L++    T++++ +
Sbjct: 594 NLERRLNDEQLAQYVAKLETDLGTTINESAV 624


>gi|75676027|ref|YP_318448.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           winogradskyi Nb-255]
 gi|74420897|gb|ABA05096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           winogradskyi Nb-255]
          Length = 636

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 148/540 (27%), Positives = 275/540 (50%), Gaps = 8/540 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IR AS  W+ K  + +    L V F IWG++D +F   G S + +VG  ++    F
Sbjct: 1   MLRGIRNASSNWLGKTLMTIVMGLLIVAFGIWGIAD-IFHGFGQSALATVGGTEISTEQF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              +   L  I ++ G  +  ++ R++GLD++IL  +++ A LD+  +  GL+     + 
Sbjct: 60  RQIYNDRLQQIGRQFGRPLPPDQVRALGLDRQILQQVIAEAALDEDAQRKGLKVSDEEIG 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            +I   P F G +N F    F   + + G  E+ Y+     M  R  +VG    G+ PS 
Sbjct: 120 RQIKSDPNFKGANNAFDAARFAGLIRQLGYTEQRYVAEQRNMALRRQIVGTMTAGVEPSK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            LL+   RF  E R++DY+ L       I  P+   L+ +F+ +K  +RAPEY+++++++
Sbjct: 180 TLLEALNRFQNEQRTIDYVKLGAAQAGTIDPPTADQLSGYFDAHKVQFRAPEYRKVAFVV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
               E  K   +S+D+ +  YE+ K+K  +PE R + Q++FP+  +A  A + +  G  F
Sbjct: 240 LTPEEVAKWTAVSDDDARKIYEERKDKLSTPERRQLRQIMFPSVTDAQAAREKIAGGASF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             +A E+G + SDI LG+ SK  I D ++A++ FS+    + +    G FG  +  V  I
Sbjct: 300 DDIARERGLATSDIDLGTISKAEIIDPAIANAAFSI-NSDEVSQPTQGRFGVALIKVGRI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P    +++ V + +   + + +A  ++   + ++E+    G S+ E +++  + ++ + 
Sbjct: 359 EPGNQPTYESVAEKLKRDVALDRARAEINNLHNKMEDERGGGASVVEAAKKVGLSAVTIE 418

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
             D +G+   GK V+ IP    L+ + F  D  +  D T+ L +  ++W  +    P+RD
Sbjct: 419 ATDRSGRAPDGKPVSGIPQGVDLIAQAFASDVGVDND-TLQLGNNGFIWFDVIGVTPSRD 477

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L+EV   V+  W+  + +  + +KA   + +  + GK   D   +LG  + + + I R
Sbjct: 478 RTLDEVKDKVEARWREDQISSRLMTKATDTIRKLEQGGK-LADEAASLGLKVESASAIKR 536


>gi|254469828|ref|ZP_05083233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp.
           JE062]
 gi|211961663|gb|EEA96858.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp.
           JE062]
          Length = 628

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 170/629 (27%), Positives = 303/629 (48%), Gaps = 24/629 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R +  +W AKI + +L + F +WG++D +F+  GS++V SVG +++    F  ++
Sbjct: 1   MLDALRNSVGSWFAKILIGLLVLSFAVWGIAD-VFTGIGSTSVASVGDKEISAQDFQRAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +EL  +S+++G  V  E+A + G+  ++L  LV+ A LD     + +      +   I 
Sbjct: 60  SRELDQLSRRVGQPVTQEQAAAFGVPAQVLGRLVAEAALDNEASKLRIGVSDEAIIKTIQ 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P F G  N +  +     L   G++E E++     +  R  +    +GG+     +L+
Sbjct: 120 ETPAFQGV-NGYDRNRLGQVLYNLGMSEDEFVMQQQLVAERQQLAEAVIGGIVVPETMLE 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              ++  E R+V+Y+VL    +  +  P++  L  +FE+ K NY+APEY+  + I     
Sbjct: 179 AFDKYAMEERTVEYLVLPKSSLTDVPAPTDEELNAFFEENKGNYKAPEYRSATIIELTSD 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +  K   ++++E+  EYE+ K +Y S E R + Q+ FP ++EA+ A   +  GK F  L 
Sbjct: 239 KIAKPENVTDEEIAQEYERTKNRYQSQEQRRIYQISFPTKQEAEAAVVEMDSGKTFEDLM 298

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E+  +  D+ LG  +K    D  +AD+ F+L ++G  + V+ G F   I     +KP+ 
Sbjct: 299 NERDLTEKDVDLGLMNKAGFLDQKIADAAFAL-QEGQASNVVEGQFTNAILFAKEVKPAA 357

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
               ++VK ++   +    A+++V++ +  +E+  A G++ +EI+ R  +  I+ P  D 
Sbjct: 358 VQPLEDVKDELRTVVAQANAADEVEDLFNEVEDARAGGSTFEEIAERFDLELINTPAFDA 417

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKD-----DPLSKDHTVALPDGSYMWVQIKESIPAR 475
           +G +  G E   +P   +L   VF  D     DPL    T       ++W ++KE  P+R
Sbjct: 418 SGNNEAG-ETVELPIANELTTAVFSTDVGVENDPLEIGRT------GHLWYEVKEVTPSR 470

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
           DR+L EV   V  DW   +T E +  KA  L+ E  + GK+  +I    G +  T+    
Sbjct: 471 DRELSEVKEAVTADWTANRTGELLEEKAKTLIAEV-EAGKSLSEIAAAEGLTTTTSQPFT 529

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV-----QEKDKF 590
           R        G   I+  FSGP       P  N     +  V      P      +   + 
Sbjct: 530 RNGGVQGLSG-SAITAAFSGPKGTAAQVPGNN--EDRILLVLTDTTAPAFMTESENAQRI 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
            + LT  +   LL+  I  L+    V V+
Sbjct: 587 NTQLTGALESSLLNQFINQLEQTEGVLVN 615


>gi|307942204|ref|ZP_07657555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseibium sp.
           TrichSKD4]
 gi|307774490|gb|EFO33700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseibium sp.
           TrichSKD4]
          Length = 635

 Score =  253 bits (645), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 171/631 (27%), Positives = 305/631 (48%), Gaps = 10/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK + TWVAKIF+ +L   F +WG++D +FS  G +TV  VG  ++   +F  ++
Sbjct: 1   MLDALRKGAGTWVAKIFIALLVFSFAVWGVAD-VFSGFGQNTVAKVGETEIATVAFDRAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L    +++G  +++      G+ ++ L  +++ A L++   ++ L      + G I 
Sbjct: 60  RQDLNRFGRQLGRPLSTTEGAQFGIPQQTLGRMIAEAALNETGRELNLGISDDHLAGIIQ 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F      +   +    L   G++E EY+    +   R  +     G M      L+
Sbjct: 120 NDPNFRRAGGGYDRALLAQVLRNIGMSEDEYVIQQREFAERQQIAQAVSGDMPAPTAYLE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E R +  IVL    V  I DP  A L  +FE+ K  +RAPEY++++ +     
Sbjct: 180 VLNAYENETRDISLIVLTAEQVGEIEDPDQAALEAYFEENKVAFRAPEYRKVTLLELTPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
              +  +IS+D    EYE++K +YF  E R   Q+VF +  EA EA Q L  G  F +L 
Sbjct: 240 ALARPEDISDDMALDEYERDKSRYFEAEKRRARQIVFQDPAEAAEASQRLSDGTTFEELM 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E+  S +D++LG  ++E   D ++ ++ FSL+  G   PV  G F   I +V  I+P  
Sbjct: 300 AERNLSDNDVNLGLMAQEDFLDTAVGEAAFSLSVGGTSEPV-DGRFSTAIVNVLEIQPEA 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T  F +VK DI   +   +A  +V +    +E+  A G  + E++ R ++ +      D 
Sbjct: 359 TQPFDDVKADIKALLAAEQAEREVLDLLDEIEDARAGGDLLAEVAERLQLTTTMPDAFDH 418

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           AGK +    V ++P   +L+  VF  D  +  D  V L +  ++W ++ E IPAR+R L+
Sbjct: 419 AGKGLDENSV-SLPDAVELISGVFSSDVGVEND-PVQLGNRGFLWYEVSEVIPARERTLD 476

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  + A+ + + A+    E  K G+  + + +  G ++ T + + R    
Sbjct: 477 EVTQKVIDAWKEAELAKRLENMADDYA-ERVKNGETMQALAETAGLTVQTNDGVKRTAT- 534

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS----YLTQ 596
           +     +G++Q+F+GP  +V      +  + VV KV    +     +++ I      L  
Sbjct: 535 SLAVSRNGLTQLFAGPEGLVAAVEAADSAARVVAKVNKVNIPAFFAEEQGIQALGMQLAN 594

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            M   LL   ++ ++ +  V ++D  +   L
Sbjct: 595 QMQDSLLSQYVSGIEERAGVEINDGAVALVL 625


>gi|163868048|ref|YP_001609252.1| peptidyl-prolyl cis-trans isomerase D [Bartonella tribocorum CIP
           105476]
 gi|161017699|emb|CAK01257.1| peptidyl-prolyl cis-trans isomerase D [Bartonella tribocorum CIP
           105476]
          Length = 628

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 164/609 (26%), Positives = 314/609 (51%), Gaps = 17/609 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML++IR A+ +W+ +IFL +L + F L+WG+            +++ G+  +    +  +
Sbjct: 1   MLDVIRSAANSWIFRIFLAILLLCFILLWGIPQ--LHTKSERDLITSGKSIITIDDYRLA 58

Query: 60  WKQELGMISQ--KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              +   ++Q   +G +      +   +   + + L     LD+    + +      +  
Sbjct: 59  LADQSARLAQAAHLGRMFTPNEMQQYQIPAFVFNQLQQNVLLDEQARKMKISLSKDTIAH 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I    +F   +  F+ D+F + L    I E  ++++YTK   R  ++   +  M+  NL
Sbjct: 119 TIGSDKMFQ-INGTFNKDLFYNYLQHLRIGESAFLNYYTKQEKRNQLIAALLSDMKAPNL 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                  +  E RS DY++++ +    IADP +  L +WFE ++  +RAPEY+ +S +  
Sbjct: 178 FYKALALYQEEKRSADYLIIDLKE-QTIADPDHETLQKWFETHQSEFRAPEYRTVSLLSM 236

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           ++++  K  +IS DE +A Y +N   + +PE RT E+L FP ++EAD A + +  G  F 
Sbjct: 237 ELNDFVKPKDISTDEAKAYYTQNTSHFVTPEKRTFEELRFPTREEADNAAKKIADGLSFD 296

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +L + + K+L+DI  G  ++  +P+  LA  IF L ++G  +PVI+   G V+  V++I+
Sbjct: 297 ELVKAEKKTLNDIKKGPLAENELPN-HLASEIFEL-QQGQVSPVINDLQGPVLIRVTHIE 354

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           PS ++ F+ V++ I   +   +A++ ++ +Y  +E     G S+ E++ + K+ S+    
Sbjct: 355 PSSSLPFESVEESIRQTLAKNRATDDIRNNYVAIENARFEGASLKELADQYKL-SLRTIT 413

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           +D  GK ++G+ +  +P K+ LL  ++  ++ +  D  ++  +G Y+W ++ + IPARD+
Sbjct: 414 LDKTGKTLEGETLTDLPQKDALLDAIYQSNEGVDLD-PLSFQNGGYLWYKVDKIIPARDK 472

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
            LEE   DV   WK+ +T   +  KA Q  L+   EGK+  D+ + LG +  TT  + R 
Sbjct: 473 TLEEAELDVLSQWKSEETQRLLDEKA-QNALKQFMEGKSLVDLARTLGVTKQTTPPLRRQ 531

Query: 538 DNENKFFGYDGISQVFSGP---VEMVKCFPIENGLSYVVFKVTNSK-VGPVQEKDKFISY 593
           D   +  G +G+  +FSGP     ++K     N + Y +  VT  K + P     +  + 
Sbjct: 532 D-PFEILGVEGVKALFSGPKGHYGIIKGPVATNRIIYQINSVTMPKDITPHTLSPEVRTN 590

Query: 594 LTQMMNKDL 602
           +  M+ +DL
Sbjct: 591 IDMMIREDL 599


>gi|49475360|ref|YP_033401.1| peptidyl-prolyl cis-trans isomerase protein [Bartonella henselae
           str. Houston-1]
 gi|49238166|emb|CAF27375.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella henselae
           str. Houston-1]
          Length = 629

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 173/619 (27%), Positives = 309/619 (49%), Gaps = 36/619 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSF--- 56
           ML+IIR A+ +W+A+IFL +L + F L+WG+            ++S G   +    +   
Sbjct: 1   MLDIIRNATNSWIARIFLAILLLCFILLWGIPQ--LHTKSERDLISSGESIITIDDYRLA 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           +      L + S ++G +      +   +   + + L      D+    + +      + 
Sbjct: 59  LADQSARLALAS-RLGRMFTPNEMQQYQIPAFVFNQLQQDVLFDEQTRQMKINLSKDAIA 117

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            +I    +F   +  F HD+F + L +  I+E  ++D+YTK   R  ++   + GM+  +
Sbjct: 118 RKIGADNMFQ-INGVFKHDLFRNYLQQLHISESNFLDYYTKKEKRNQLISASLSGMKAPD 176

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
           L       +  E R  DY+VL+ +    I++P    L +WFE +++ +R PEY+ IS++ 
Sbjct: 177 LFYKALAFYQRETRIADYLVLDLKEKEIISEPHQETLQKWFETHRNKFRVPEYRTISFLS 236

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
            ++ +  K  +IS DE++  Y +N  ++ +PE RT+E+L FP ++ AD A + +  G  F
Sbjct: 237 MELADFIKPKDISEDEVKNYYTQNSSRFITPEKRTIEELRFPTREAADNAVKKIADGLSF 296

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             L + + K+L+DI  G F++  +P   L+  IF L K+G  + VI+   G VI  V++I
Sbjct: 297 DDLVKAENKTLNDIKKGPFTENELPSY-LSSEIFEL-KQGQISAVINDLQGPVIIRVTDI 354

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
            P+  + F++V+ +I   +   +A++ ++  Y  +E     G S  E++ + K     LP
Sbjct: 355 TPAGPIPFEKVEDNIRQTLAQNRAADDIRNSYTEIENARFEGASFKELADQYK-----LP 409

Query: 417 L----VDFAGKDVKGKEVAAIPYKEQLLFRVF----GKD-DPLSKDHTVALPDGSYMWVQ 467
           L    +D  GK ++G  +  +P K+ LL  ++    G D DPLS      LP+G Y+W +
Sbjct: 410 LRTITLDKTGKTIEGTILTDLPQKDLLLNSIYQSNEGADLDPLS------LPNGGYLWYK 463

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           I   IPARD+  EE   +V   WK  +    +  KA    L+   EGK+   +   LG +
Sbjct: 464 INTIIPARDKTFEEAKQEVIAQWKKEEIQRLLDEKAKD-ALKQLTEGKSLVSLAHILGVT 522

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGP---VEMVKCFPIENGLSYVVFKVTNSK-VGP 583
             TT  + R D+ ++  G++G+  +FSGP     +VK    +N + Y + +VT  K + P
Sbjct: 523 KQTTQPLRRQDS-SEILGFEGVKALFSGPKGHYGIVKGPIAKNRILYQIKEVTTPKDISP 581

Query: 584 VQEKDKFISYLTQMMNKDL 602
                   S +  M+ +DL
Sbjct: 582 HTLSSDIRSNIDMMIREDL 600


>gi|319405521|emb|CBI79140.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella sp. AR
           15-3]
          Length = 629

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 166/592 (28%), Positives = 295/592 (49%), Gaps = 32/592 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           MLE IR A  +WVAKIFL  L + F+ +WG+      +     +++ G+  +   ++   
Sbjct: 1   MLETIRNAVNSWVAKIFLTTLLLCFIFLWGVPQ--LHIMNEKELLTSGKSTITIDNY--- 55

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKK--------ILDNLVSGATLDQFIEDIGLEAD 111
               L +  Q +   + S   R    D+         +L+ L      D+    + +   
Sbjct: 56  ---RLALADQSLRLAITSHLGRMFTPDEIQRYKIPVFVLNQLQQDVLFDEQARKMKINLS 112

Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
              +   I+   +F  ++  F+ D+F++ L R   NE+ ++++YTK   R  ++   + G
Sbjct: 113 KDMLARIISNDNIFQ-RNRAFNRDLFLNYLQRLHTNERNFLNYYTKKEKRKQLILASLSG 171

Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           M+  N+       ++ E R  DY+V++ +    +ADP+  +L +WF  +K  +RAPEY+ 
Sbjct: 172 MKAPNIFYKALATYHEEKRIADYLVIDLKKEEKVADPNQEILEKWFNTHKKKFRAPEYRT 231

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +S +     E  K  ++S +E+Q  Y +N  ++  PE RT+E+L F  ++ AD A + + 
Sbjct: 232 VSLLSITSEEFLKPQDVSVNEIQTYYTQNASRFIIPEKRTIEELRFSTREAADNAAKKIA 291

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           +G  F  L +E+ K LSDI+ G  ++  +P+  LA  IF L KKG  + VI+   G VI 
Sbjct: 292 EGLSFDALVKEEKKKLSDITKGPLAENELPN-HLASEIFEL-KKGQISAVINDLQGPVII 349

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            V++I PS  +  Q+V+K+I   +    A+  V+  Y  +E     G S+ E++++ K  
Sbjct: 350 RVAHITPSTQIPLQKVEKEIRQILAKNYATTHVRNKYTEIENARFEGASLAELAKQYK-- 407

Query: 412 SIDLPL----VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
              LPL    +D  GK  +G  +  +P K+ LL  ++   + +  D  ++LP+G Y+W Q
Sbjct: 408 ---LPLRKITIDKTGKTTEGISLTDLPQKDILLNAIYQSRENIDMD-PLSLPEGGYLWYQ 463

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           +   IPARDR L E   +V   W+  +    +  KA Q +L+    GK+   +   LG  
Sbjct: 464 VDTIIPARDRTLSEAKQNVIIQWREEEIQRLLDEKA-QDILKQLANGKSLDALATELGII 522

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
             TT  + R D+ ++ FG +G+  +F  P +        N  + +++K+T S
Sbjct: 523 KQTTPALRRQDS-SQIFGVEGVKALFYDPQDHYGVVKGVNAENRIIYKITTS 573


>gi|85716537|ref|ZP_01047508.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp.
           Nb-311A]
 gi|85696726|gb|EAQ34613.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp.
           Nb-311A]
          Length = 582

 Score =  246 bits (628), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 155/569 (27%), Positives = 284/569 (49%), Gaps = 5/569 (0%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           I + +L V F IWG++D +F   G S + +VG  ++    F   +   L  I ++ G  +
Sbjct: 3   IVMGLLIVAFGIWGIAD-IFQGFGQSALATVGNTEISTEQFRQIYTDRLQQIGRQFGRTL 61

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
             ++ R++G+D++IL  +++ A LD+     GLE     +  +I   P F G +  F   
Sbjct: 62  PPDQVRALGIDRQILQQVIAEAALDEDARRKGLEVSDKEISRQIMSDPNFKGANGAFDPA 121

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
            F   + + G  E+ Y+     +  R  +VG    G+ PS  LL+   RF  E R++DY+
Sbjct: 122 RFAGLIRQLGYTEQRYVTEQRNLALRRQIVGTVTAGVEPSTKLLEALNRFQNEQRTIDYV 181

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
            L      +I  P+ A L+ +F+ +K  +RAPEY++I++++    E  K   +S+D+ + 
Sbjct: 182 KLGAAQAGSIDPPTEAQLSGYFDAHKVQFRAPEYRKIAFVVLTPEEVAKWTTVSDDDAKK 241

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
            YE+ K+K  +PE R + Q++FP+  +A  A + +  G  F  +A+E+  + SDI LG+ 
Sbjct: 242 VYEQRKDKLSTPERRKIWQIIFPSVADAQAAREKIASGASFDDIAKERNLATSDIDLGTI 301

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           S+  I D ++A++ FSL K  D +  I G FG  +  VS I+P    ++  V   + + +
Sbjct: 302 SRPEIVDPAVAEAAFSL-KTDDVSQPIQGKFGVALVKVSKIEPGNQPTYDSVATKLKHDI 360

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
            + +   +V   + ++E+    G S+ E +++  + ++ +   D +G+   GK V  IP 
Sbjct: 361 AVDRGRAEVNNLHNKMEDERGGGASVVEAAKKVGLSAVTIEATDRSGRAPDGKPVTEIPQ 420

Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
              L+ + F  D  +  D T+ L +  ++W  +    P+RDR L EV   V+  W+  + 
Sbjct: 421 GVDLIAQAFASDVGVDND-TLQLGNNGFVWFDVLGVTPSRDRTLAEVKDKVEAGWRKDQI 479

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
           +  + +KA  +V    + GK   +   +LG  + + + I R D          ++ VF  
Sbjct: 480 SGRLMTKATDIVRNLEQGGK-IAEESSSLGLKVESASAIKR-DATTGELPAAVVAAVFRV 537

Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
                   P  +   + VF+VT+ KV P+
Sbjct: 538 VKGAAGQAPGADNDEWFVFRVTDVKVPPL 566


>gi|86749913|ref|YP_486409.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris HaA2]
 gi|86572941|gb|ABD07498.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris HaA2]
          Length = 633

 Score =  246 bits (628), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 162/633 (25%), Positives = 307/633 (48%), Gaps = 19/633 (3%)

Query: 1   MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IR AS  WV K    I + VL + F +WG++D +F   G ST+ ++G  ++    F
Sbjct: 1   MLRGIRNASSNWVGKTIMMIVMGVLILSFAVWGIAD-IFRGFGRSTLATIGGTEITTEQF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             ++   L  I ++ G  +  ++AR+ G+D+++L  +++ A LD+    +GL        
Sbjct: 60  RQTYNDRLQQIGRQFGRPLTPDQARAFGIDRQVLQQVIAEAALDEDARRLGLGQSDEETM 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G    F  + F   + + G  E+ YI    K+  R  + G    G+ PS+
Sbjct: 120 KSILNDPNFKGVGGAFDPNRFQQVIRQFGFTEQRYIAEQRKVALRRQIAGTITAGLAPSS 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +L  A +F  E R+++Y+ L +  V  I  PS   L  ++E +K  +RAPEY++++++ 
Sbjct: 180 TMLQVASQFQNEQRAIEYLKLTDAQVGTIDPPSPEALAAYYEDHKTQFRAPEYRKLAFVT 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K  ++S+ + +  +++ K+K  +PE R V Q+VFP+ +EA  A   + +G  F
Sbjct: 240 VTPDSIAKWTDVSDADARKLFDQRKDKLSTPEKRQVSQIVFPSGEEAQAARTKIAEGASF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             +A ++G   +D+ LG  SK  + D ++A++ F+L       P I G+FG  +  VS +
Sbjct: 300 DDIATQRGLKPADVELGMVSKAEMLDPAVANAAFALPLNEVSQP-IQGAFGTALVRVSKV 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P    S++ +   I   + + +A  +V+E + ++E+  A G ++ E ++   + ++ + 
Sbjct: 359 EPGVQPSYESLASTIKRDVSLERARAQVQELHDKMEDARAGGANVIEAAKTLGLNAVTIE 418

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            +D +G+   G+ V  IP   +L    F  D  +  + ++   +G Y+W  +    P+R+
Sbjct: 419 AIDRSGRGPDGQPVKDIPQGLELATAAFNSDVGVDTE-SINYQNG-YVWFDVLGVTPSRE 476

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L+EV   V+  W+T +    + + A ++V +    GK   ++    G  + T   + R
Sbjct: 477 RSLDEVKDQVEARWRTEQVTSRLRTMAAEMVQKLGTAGK-LAEVAPQ-GVKVETATGLKR 534

Query: 537 MDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKF 590
              E    G     +  VF    +         G  + V++VT+  + PV     E  K 
Sbjct: 535 ---EGASAGVPDTVVEAVFRTQKDAFGQSQGGTGNEWFVYRVTDVTIPPVDLASAETKKL 591

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
              L Q MN + +   IA+++ Q    ++   +
Sbjct: 592 KDALVQRMNDEQVGEYIAWVEKQIGTKINQQAV 624


>gi|319407091|emb|CBI80728.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella sp. 1-1C]
          Length = 629

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 166/590 (28%), Positives = 299/590 (50%), Gaps = 28/590 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+ +R +  +WVAKIFL  L + F L+WG+       +  + +++ G+  +   ++   
Sbjct: 1   MLKTMRNSVNSWVAKIFLSTLLLCFILLWGVPQ--LHTTNKNELLTSGKSTITVDTY--- 55

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
               L +  Q +   + S   R    D+ I    +    L+Q  +D+  +    ++   +
Sbjct: 56  ---HLALADQSLRLALTSHLGRMFTPDE-IQKYKIPFFVLNQLQQDVLFDEQARKMKINL 111

Query: 120 ARSPLFH--GKDNKFSH------DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
           ++  +    G D+ F H      D+F++ L +   NE  ++ +YTK   R  ++   + G
Sbjct: 112 SKDMIARIIGNDDIFQHNRVFNRDLFLNYLQQLQTNENNFLKYYTKKEKRNQLISASLAG 171

Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           MR  ++       ++ E R  DY+V++ +    IADP+  +L +WF+ +K+ +RAPEY+ 
Sbjct: 172 MRAPDIFYKALATYHEEKRIADYLVIDLKKEKKIADPNPEILEKWFDTHKNKFRAPEYRT 231

Query: 232 ISYILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           +S  LF +  +E  K   IS +E+Q  Y +N  ++ +PE R +E+L F  ++ AD A + 
Sbjct: 232 VS--LFSITSEEFLKPQNISVNEIQTYYTQNASRFITPEKRIIEELRFSTREAADNAAKK 289

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + +G  F  L +E+ K+LSDI+ G   +  +P+  LA  IF L KKG+ + VI+   G V
Sbjct: 290 IAEGLNFDALVKEEKKNLSDITRGPLEENELPN-HLASEIFEL-KKGEISAVINDLQGPV 347

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           I  V++I PS  +  Q+V+ DI   +    A   ++  Y  +E     G S+ E++++ K
Sbjct: 348 IIRVAHITPSTQIPLQKVENDIRQTLAKNYAVTHLRNKYTEIENARFEGASLKELAKQYK 407

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
           +    +  +D  GK  +G  +  +P KE LL  ++   + +  D  ++LP+G Y+W Q+ 
Sbjct: 408 LPHRKIT-IDKTGKTTEGITLTDLPEKEVLLNAIYQSREGIDMD-PLSLPEGGYLWYQVD 465

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
             IPARDR L EV  +    WK  +    +  KA  ++ + +K GK+   +   LG    
Sbjct: 466 TIIPARDRTLSEVKQNAIFQWKEEEIQRLLDEKAQNILKQLAK-GKSLDALATELGIIKQ 524

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
           TT  + R  N ++ FG +G+  +F G  +        N  + +V+K+T S
Sbjct: 525 TTPALQR-QNRSQIFGVEGVKALFYGTKDHYGVVKSVNAANRIVYKITAS 573


>gi|323138293|ref|ZP_08073365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp.
           ATCC 49242]
 gi|322396545|gb|EFX99074.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp.
           ATCC 49242]
          Length = 635

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 182/643 (28%), Positives = 320/643 (49%), Gaps = 22/643 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF----VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           MLE +R AS+ W+ +  + V+     V F IWG+ D +F    +S +V VG  +V   SF
Sbjct: 1   MLEGLRVASQNWIGRTIMAVVMGVIVVSFAIWGVGD-VFRGMTTSRLVKVGSGEVSVDSF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            N+++ EL  I Q++   V ++ AR  GLD ++L+ L++   LDQ    +GL +      
Sbjct: 60  RNAYQNELRRIQQRLRRAVTNQEARQAGLDLQVLERLITEVALDQKARQLGLASSDETTQ 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             +A+  +  G D KF  + F  ++AR+ G  E+ ++        R  +  +   G+ P 
Sbjct: 120 QLLAKEKVLQGPDGKFDVERF-KQIARDAGFTERGFVADQKSAYLRKLLTDLVTNGVEPP 178

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+++   RF  E+R++DY VL        + PS+  L ++F++ +  +RA EY++++ +
Sbjct: 179 RLMIEAIHRFRNESRTIDYFVLPVSAAGPASTPSDEELKKYFDEREQTFRAKEYRKLTAL 238

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           +       K  E++ DE++  YE++K + F +PE R V Q+V    KEA++A   LK G 
Sbjct: 239 VVSPTSVGKPGEVTEDEVRKLYEESKARRFGTPEKRDVRQIVLKTDKEAEDALARLKGGM 298

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
               LA E   +  D++LG   +    D  +  ++F+LAK G   PV   +FG VI+ V 
Sbjct: 299 DIDALAAELKLNPKDVNLGLVEQRDFGDAKVGAAVFALAKPGLAEPV-KTAFGTVISQVK 357

Query: 355 NIKPS-FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           +I P+ +T +F++   ++  ++   KA  +V+  +  +E+  A G ++ E +   K V +
Sbjct: 358 SIAPAVYTKTFEQAAPELRVEIAAQKAGPEVRRLHDAIEDQRAAGKTLAETA---KGVGL 414

Query: 414 DLPL---VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           D+ +   VD AG D  GK +A +P    LL   F  D  +  D TVA  DG Y+W ++  
Sbjct: 415 DVRVIEAVDDAGHDKDGKAIADLPAGPDLLKAAFASDVGVDND-TVATRDGGYVWFEVNA 473

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             PAR +  EEV   V +  +     + ++ KA++LV +  + G+   D+ K++ A +  
Sbjct: 474 VEPARQKTFEEVKGAVLEAMRNEAAQKALAEKADELVGKL-RSGQPIEDVAKSVNAEVKR 532

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG-LSYVVFKVTNSKVGPVQEKDK 589
              + R    +  F    I Q F  P       P + G L + V   T     P+  + K
Sbjct: 533 ATDVKRAARPD--FNNPTIVQFFDVPPRGAGSLPGDAGRLVFFVKDSTAPAFDPLSIESK 590

Query: 590 FIS-YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
            I+  L   ++ DLL+  +  L+   +V ++   ++     EK
Sbjct: 591 TIAEQLRPALHNDLLEQFVGGLEKALNVEINQKALEAATGTEK 633


>gi|240850253|ref|YP_002971646.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
 gi|240267376|gb|ACS50964.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
          Length = 629

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 156/569 (27%), Positives = 297/569 (52%), Gaps = 32/569 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPF-LIWGL------SDALFSVSGSSTVVSVGRQKVPF 53
           ML+IIR A+ +W+ +IFL +L + F L+WG+      S+     SG STV          
Sbjct: 1   MLDIIRNATNSWIFRIFLAILLLCFILLWGVPQLHKKSERDLITSGKSTVT--------- 51

Query: 54  SSFINSWKQELGMISQKIGFVVNSERARSVGLDKK------ILDNLVSGATLDQFIEDIG 107
              ++ ++  L   S ++ +  +  R  +    ++      + + L     LD+ +  + 
Sbjct: 52  ---VDDYRLALADQSARLAYAAHLGRMFTANEMQQYQIPAFVFNQLQQNLLLDEQVRKMK 108

Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
           +      +   I    +F   +  F  ++F + L    I+E  ++++YTK   R  ++  
Sbjct: 109 ISLSKDTIAHTIGSDKMFQV-NGTFDKNLFYNYLQHLRISESAFLNYYTKQEKRNQLIAA 167

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
            +  M+  NL       +  E R  DY+V++ +    IADP +  L +WF+ ++  +RAP
Sbjct: 168 LLSDMKAPNLFYKALALYQGEMRIADYLVIDLKEKETIADPDDEKLQKWFKTHQSQFRAP 227

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           EY+ +S +  ++++  K  +IS DE +A Y +N  ++ +PE RT E+L FP+++EAD A 
Sbjct: 228 EYRTVSLLSMELNDFVKPKDISTDEAKAYYTQNASRFVTPEKRTFEELQFPSREEADNAA 287

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           + +  G  F +L + + K+L+DI  G  ++  +P   LA  IF L ++G  + VI+   G
Sbjct: 288 KKIADGLSFDELVKAENKTLNDIKKGPLAENELPS-HLASGIFEL-QQGQVSTVINDLQG 345

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
            +I  V++I+PS ++ F++V+++I   +   +A++ ++ +Y  +E     G S+ E++ +
Sbjct: 346 PIIIRVTHIEPSSSLPFEKVEENIRQTLAKNRATDDIRNNYVAIENARFEGASLKELADQ 405

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
            K+ S+    +D  GK ++G  +  +P K+ LL  ++  ++ +  D  ++  +G Y+W +
Sbjct: 406 YKL-SLRTITIDKTGKTLEGAILTDLPQKDILLNAIYQSNEGVDLD-PLSFQNGGYLWYK 463

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + + IPARD+ LEE   DV   WK+ +    +  KA Q  L+   EGK+   + + LG +
Sbjct: 464 VDKIIPARDKTLEEAKLDVLSQWKSEEIQRLLDEKA-QNALKQLTEGKSLVALARTLGVT 522

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGP 556
             TT  + R D+ +   G +GI  +FS P
Sbjct: 523 KQTTPALRRQDSSDP-LGVEGIKALFSAP 550


>gi|316933952|ref|YP_004108934.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris DX-1]
 gi|315601666|gb|ADU44201.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris DX-1]
          Length = 633

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 161/629 (25%), Positives = 298/629 (47%), Gaps = 19/629 (3%)

Query: 1   MLEIIRKASRTWVAKIFLV----VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IR AS  W  K  ++    +L V F IWG++D +F   G +T+  +G  ++    F
Sbjct: 1   MLRGIRNASSNWFGKTIMIAVMGLLIVSFGIWGIAD-VFRGFGRATLAKIGGTEISTEQF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             ++   L  I +++G  +  ++AR++G+D+++L   ++ A LD+    +GL        
Sbjct: 60  RQTYNDRLQQIGRQLGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTM 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G + +F    F   + + G  E+ Y+    ++  R  + G    G+ P  
Sbjct: 120 KSILEDPNFKGANGQFDAGRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGTITAGLEPPK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            LL    +F  E R++DY+ L +     I  PS A L  +++ +K  +RAPEY++IS+++
Sbjct: 180 TLLQALSQFQNEERAIDYLKLTDAQAGTIEAPSPADLAAFYDSHKAQFRAPEYRKISFLV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K  E+S+ + +  +++ K++  +PE R + Q+VFPN +EA  A   +  G  F
Sbjct: 240 VTPESIGKWTEVSDADARKLFDQRKDRLSTPEKRQILQIVFPNAEEAQAARAKIASGTSF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             LA+E+G   +D+ LG  S+  + D  +A + F+L       PV  G FG V+  V+ I
Sbjct: 300 ADLAQERGVKSADLDLGLVSQSEMLDPKVAAAAFALPLNEVSQPV-QGQFGTVLLEVTKI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P     +  V  ++  ++   +A ++V+E + ++E+    G+S+ E + +  + ++ + 
Sbjct: 359 EPGKQPDYASVAANLKRELAQERARKQVQELHDKIEDARGGGSSVSEAASQLGLAAVTVE 418

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            +D +G+   G  V  IP   +L    F   +P   +  ++  +G Y+W  I    P+R+
Sbjct: 419 AIDRSGRGPDGAPVTTIPQGLELATAAF-NSEPGVDNDAISYQNG-YVWYDIVGVTPSRE 476

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L+EV   V+  W+  +  E +   A +LV +    GK   D+    G ++ +   I R
Sbjct: 477 RALDEVKDKVEAGWRAEQITERLRKLAVELVQKLDGGGK-LADVAP-AGVAVQSATGIKR 534

Query: 537 MDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKF 590
              E    G  G  +  VF    +        +G  + VF+VT   V        +  + 
Sbjct: 535 ---EGADAGLPGTVVDAVFRTAKDAAGQVQGSSGTEWYVFRVTGDTVTTADVNAPQMQQL 591

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
              L Q +  + +   IA+L+      V+
Sbjct: 592 KDNLVQRLRDEEVGQYIAWLEKDIGTKVN 620


>gi|254564031|ref|YP_003071126.1| peptidyl-prolyl cis-trans isomerse D [Methylobacterium extorquens
           DM4]
 gi|254271309|emb|CAX27321.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium
           extorquens DM4]
          Length = 634

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 169/645 (26%), Positives = 311/645 (48%), Gaps = 27/645 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-----SGSSTVV-SVGRQKVPFS 54
           ML+ IR AS+ W+ K+ L V+F  FLI G+  A+F V      GSST V +VG+  +   
Sbjct: 1   MLQSIRSASQHWLGKVVLSVIFT-FLIAGV--AIFGVEEFFRGGSSTAVATVGKTPISAE 57

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
               +++ +L     ++   +  ++AR++GL++++L  L++ A LDQ   D+GL      
Sbjct: 58  EVRTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDAT 117

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V   I   P F   +  F   +F   L R G+NE  ++     +++R  +    V  M  
Sbjct: 118 VLRAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPV 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
              + +   R+  E R    + L       I  P++  L  ++E  K ++RAPEY+ ++ 
Sbjct: 178 PQAIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNL 237

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           ++ D     K  E+S+DE +  YE N  ++   E RT++Q+ FP++  A EA   ++ G+
Sbjct: 238 LVLDPAALAKPDEVSDDEARKVYEANPGRFGKAERRTIQQISFPDEATAAEARAKIESGE 297

Query: 295 -KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             F  +A ++G     + LG+ +K  + D ++ ++ F+L ++G  +  + G FG V+  V
Sbjct: 298 TPFETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRV 356

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS----EKVKEDYKRLEEFLALGTSMDEISRREK 409
           + I+P     F EVK +I  ++ + +      +KV++    +E+  A    + EI++ + 
Sbjct: 357 TAIEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQD---AIEDARASAKPLAEIAKDQG 413

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
           +  + +P VD  G D  G+ VA IP KE  L   F + D  +    +    G  +W  + 
Sbjct: 414 LTLVSIPAVDAQGNDPSGQPVAGIPDKETTLPAAF-RADVGNDTEVLRTKAGGAIWYDVV 472

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +  P+ ++ L EV  +V K W   +  + + +K+ +L     K G+    + +  G  L 
Sbjct: 473 KIDPSHEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQEAGVPLK 531

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE 586
           T  +I R   ++     + + ++F+ PV      P   G +  VFKVT + +    P   
Sbjct: 532 TITEIGRNQAKDD-LSTEIVERIFTTPVGKAASAPAGEGRA--VFKVTAATMPAFVPGTP 588

Query: 587 KD-KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
            D + ++ L   +  D+L   IA ++    V V+   ++R   GE
Sbjct: 589 SDGQLVTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633


>gi|319404079|emb|CBI77667.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella rochalimae
           ATCC BAA-1498]
          Length = 629

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 165/592 (27%), Positives = 295/592 (49%), Gaps = 28/592 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+ +R +  +WVAKIFL  L + F L+WG+       +  + +++ G+  +   ++   
Sbjct: 1   MLKTMRNSVNSWVAKIFLSTLLLCFILLWGVPQ--LHTTNKNELLTSGKSTITVDTY--- 55

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKK--------ILDNLVSGATLDQFIEDIGLEAD 111
               L +  Q +   + S   R    D+         +L+ L      D+    + +   
Sbjct: 56  ---HLALADQSLRLALTSNLRRMFTPDEIQRYKIPFFVLNQLQQDVLFDEQARKMKINLS 112

Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
              +   I    +F   +  F+ D+F++ L +   NE  ++ +YTK   R  ++   + G
Sbjct: 113 KDMIARIIGNDDIFQ-YNRVFNRDLFLNYLQQLQTNENNFLKYYTKKEKRNQLISASLAG 171

Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           MR  ++       ++ E R  DY+V++ +    IADP+  +L +WF+ +K+ +RAPEY+ 
Sbjct: 172 MRAPDIFYKALATYHEEKRIADYLVIDLKKEKKIADPNPEILEKWFDTHKNKFRAPEYRT 231

Query: 232 ISYILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           +S  LF +  +E  K   IS +E+Q  Y +N  ++ +PE R +E+L F  ++ AD A + 
Sbjct: 232 VS--LFSITSEEFLKPQNISVNEIQTYYTQNTSRFITPEKRIIEELRFSTREAADNAAKK 289

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + +G  F  L +E+ K+LSDI+ G  ++  +P+  LA  IF L KKG+ + VI+   G V
Sbjct: 290 IAEGLSFDALVKEEKKNLSDITRGPLAENELPN-HLASEIFEL-KKGEISAVINDLQGPV 347

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           I  V +I PS  +  Q+V+ DI   +    A   ++  Y  +E     G S+ E++++ K
Sbjct: 348 IIRVVHITPSTQIPLQKVENDIRQTLAQNYAVTHLRNKYTEIENARFKGASLTELAKQYK 407

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
           +    +  +D  GK  +G  +  +P KE LL  ++   + +  D  ++LP+G Y+W Q+ 
Sbjct: 408 LPHRKIT-IDKTGKTTEGIILTDLPQKEVLLNAIYQSHEGIDVD-PLSLPEGGYLWYQVD 465

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
             IPARDR L EV  +    WK  +    +  KA  ++ + +K GK+   +   LG    
Sbjct: 466 TIIPARDRTLSEVKQNAIVQWKEEEIQRLLDEKAQDILKKLAK-GKSLDALATELGIIKQ 524

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
           TT  + R D  ++ FG +G+  +F G  +        N  + +V+K+T S V
Sbjct: 525 TTPALRRQD-PSQIFGVEGVKALFYGTKDHYGVVKGVNATNRIVYKITTSIV 575


>gi|154248299|ref|YP_001419257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter
           autotrophicus Py2]
 gi|154162384|gb|ABS69600.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter
           autotrophicus Py2]
          Length = 630

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 164/625 (26%), Positives = 307/625 (49%), Gaps = 10/625 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           +L+ +RK +  W+AKIFLV+L + FL+WG++D +F   G+++V SVG  ++   +F   +
Sbjct: 2   VLQTLRKGASGWIAKIFLVILTLSFLVWGIAD-VFRGMGATSVASVGATEISADAFRRQY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +L  IS++ G  ++ ++AR+ GLD++IL+ +++ ATLD+    + L     ++  EIA
Sbjct: 61  LDQLQQISRRAGRPISPDQARAFGLDRQILNQMIADATLDEQASRLALAVSDEQIAREIA 120

Query: 121 RSPLFHGKD-NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            +P +       F    F   L    + E+ ++    +   R  ++     G+    +L+
Sbjct: 121 DNPNYRRPGATSFDPAYFQQLLRSNNLTEQRFVASERQRAVRDQLLKSLGAGVAVPQVLI 180

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           D   RF  E R+  Y+ +       +A P++ VL  +F+ +K  +RAPEY++IS +    
Sbjct: 181 DAVGRFENETRTASYVRVTPAAAGPLAAPTDEVLRAYFDAHKVTFRAPEYRKISVLALTP 240

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                   ++  + +A+YE+N  ++ +PE R V+Q+VF +  +A  A + +K G  F  +
Sbjct: 241 ATLAAAETVTEADAKADYERNLSRFGTPERREVQQIVFTSAADALAADEKIKAGASFADI 300

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           A  +G +  D  LG  +K  I D  +AD+ FS+ +       + G FG V+ HV+ ++P 
Sbjct: 301 AAARGLTAKDTDLGLVAKSAILDPKIADAAFSMPEGA--VSAVEGRFGTVLVHVTKVEPG 358

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
               F+ VK  I+  +R+ +A   + + + ++E+  A G+++ E++++  +       VD
Sbjct: 359 ARQPFEAVKDQISADLRLDRARRALLDKHDQVEDERASGSTLAEVAQKLGLRLQTFDAVD 418

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP-DGSYMWVQIKESIPARDRK 478
            +G    G + A +P    +L   F     +  D TV LP +G ++W +     PARDR 
Sbjct: 419 RSGHTPSG-DPADVPGGADVLSGAFAAQPGVETD-TVQLPQNGGFVWYETNAITPARDRT 476

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
            +E  + V   W   +T + V +KA  L L+ +K G     +       L     + R  
Sbjct: 477 FDEAKSAVTARWTESETEKAVEAKATAL-LDKAKAGTPLAQVAAEADLPLQIAEGLRRGR 535

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV-QEKDKFISYLTQM 597
                F  + I+ VF                  VVF+VT   V P   +  +  + L++ 
Sbjct: 536 AAGP-FSAESIASVFDVKEGGFGIALAATEPDRVVFEVTKIMVPPPDMDTSRASAELSRQ 594

Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNL 622
           +  D+L   ++ ++ +  V ++D L
Sbjct: 595 IENDVLLQYLSAIQKEIGVKINDKL 619


>gi|91977297|ref|YP_569956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB5]
 gi|91683753|gb|ABE40055.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB5]
          Length = 633

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 166/633 (26%), Positives = 299/633 (47%), Gaps = 19/633 (3%)

Query: 1   MLEIIRKASRTWVAKIFLV----VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IR AS  W  K  ++    VL + F +WG++D +F   G ST+  +G  ++    F
Sbjct: 1   MLRGIRNASSNWFGKTVMIIVMGVLIISFAVWGIAD-IFRGFGRSTLAQIGGTEISTEQF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             ++   L  I ++ G  +  ++AR+ G+D+++L  +++ A LD+    + L        
Sbjct: 60  RQTYNDRLQQIGRQFGRPLTPDQARAFGIDRQVLQQVIAEAALDEDARRLQLGQSDDETM 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G +  F    F   + + G  E+ YI    K+  R  + G    G+ PSN
Sbjct: 120 RSILNDPSFKGTNGAFDPGRFQQVIRQFGFTEQRYIAEQRKVALRRQIAGTITAGLAPSN 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +L  A +F  E R++DY+ L +  V  I  PS   L  ++E +K  +RAPEY++++++ 
Sbjct: 180 TMLLVASQFQNEQRAIDYLKLTDAQVGTIEPPSAEALAAFYEDHKAQFRAPEYRKVAFVA 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K  ++S+ + +  +++ K+K  +PE R V Q+VFPN +EA  A   + +G  F
Sbjct: 240 LTPESIAKWTDVSDADARKLFDERKDKLSTPEKRQVLQIVFPNAEEAQAARARITEGASF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             +  ++G   +D+ LG   K  + D ++A   F+L       P I G+FG  +  V+ I
Sbjct: 300 EDITNQRGLKPADVELGLVGKAEMLDPAVAKVAFALPLNEVSQP-IPGAFGTALVKVAKI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P    S++ V   I   + + +A  +V   + ++E+  A G ++ E S+   + ++ + 
Sbjct: 359 EPGVQPSYESVAPTIKRDVALERARAQVMAQHDKMEDARAGGANVIEASKMLGLNAVTIE 418

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            VD +G+   G+ V  IP   +L    F  D  +  +  +   +G Y+W  +    P+R+
Sbjct: 419 AVDRSGRGPDGQPVKEIPQGLELATSAFNSDVGVDTEQ-INYQNG-YVWFDVLGVTPSRE 476

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L EV   V+  W+T +    + + A +LV +    GK   ++    G  + T + + R
Sbjct: 477 RSLAEVKDQVEARWRTEQVTSRLRTMAAELVQKLGANGK-LAEVAPQ-GVKVETASGLKR 534

Query: 537 MDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKF 590
              E    G     +  VF    + V   P  NG  + V++VT+  V PV     +  K 
Sbjct: 535 ---EGATPGVPATVVEAVFRTAKDGVGQSPGGNGNEWFVYRVTDVTVPPVDLASDDAKKL 591

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
              L Q MN + +   IA+L+      ++   +
Sbjct: 592 KDALLQRMNDEQVGEYIAWLERDIGTKINQQAV 624


>gi|254503805|ref|ZP_05115956.1| hypothetical protein SADFL11_3844 [Labrenzia alexandrii DFL-11]
 gi|222439876|gb|EEE46555.1| hypothetical protein SADFL11_3844 [Labrenzia alexandrii DFL-11]
          Length = 635

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 167/627 (26%), Positives = 294/627 (46%), Gaps = 10/627 (1%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           +RK + TW+AK+F+ +L   F IWG++D L    G +TV  VG ++V    F   ++Q+L
Sbjct: 1   MRKGAGTWIAKLFIALLIFSFAIWGVTDFLQGY-GQNTVAKVGEKEVSLLEFDRMYRQDL 59

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             + Q+ G  +  +   S+G+ ++ L  L+  A +    +++ +     R+   I   P 
Sbjct: 60  NRLGQQFGRPLTPQEGASLGIPQQALARLIGQAAMSNAAQELKVGISDDRLGAIIQSDPA 119

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F G   ++        L      E EY+    +   R  V+   +GGM      L     
Sbjct: 120 FQGASGRYDRSRLQQVLNANDYREDEYVVLRRQEAERGQVIEGLIGGMSAPQAYLAAFDA 179

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
           F  E RSV+Y+ +    +  I DP+   L  +++  K ++RAPEY+ I Y+        +
Sbjct: 180 FQNETRSVEYVAIAAEQIGDIEDPAEDTLVTYYDGKKADFRAPEYREIRYVELVPSALAR 239

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
             +I++ + ++EY++    +  PE R V QL F + ++A  A Q+L  GK F  L  ++ 
Sbjct: 240 PEDITDADARSEYDRRISDFAEPERRRVRQLSFNSDEDAQAAAQALAGGKTFADLMADRN 299

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            + +D++LG  S+    D ++ D+ F+L+  GD + V+ G F  VI +V  I P+ T  F
Sbjct: 300 LTNNDVTLGVMSRADFLDDAIGDAAFTLS-AGDTSDVVEGRFSNVIVNVEEIIPANTTPF 358

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
            +V+ +I  ++ + +A  ++ +    +E+  A G  +DEI  R  +        D  GK 
Sbjct: 359 ADVRDEIVEELALEQAEREILDLLDEVEDARAGGALLDEIGERFSLAVKSTGSFDRDGKT 418

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
               + A +P  E L+   F  D  +  D  + + +  Y+W  +    P RDR L+EV  
Sbjct: 419 TIETD-AILPDAEGLIAGAFDSDIGIEND-VLQIGNRGYLWYDVTSVTPERDRDLDEVRD 476

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
            V   WK+ +  E +S KA  L L  ++ G +  D+    G S+ T   + R        
Sbjct: 477 QVIAAWKSDQLNERLSQKATDL-LAKAESGTSLGDLAAAEGVSVQTAEGVTR-SMPTGDL 534

Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV---GP-VQEKDKFISYLTQMMNK 600
           G D ++ +F GP   V      +G   VV KVT S++    P   E       L+Q +  
Sbjct: 535 GSDALTAIFEGPAGSVATAESADGNGRVVLKVTGSEIPEFSPETSEVTALEGQLSQQVQN 594

Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            LLD  +A  +++  V ++   + + +
Sbjct: 595 SLLDLFVAEQETRAGVEINSAAVAQVM 621


>gi|170743494|ref|YP_001772149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
           4-46]
 gi|168197768|gb|ACA19715.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
           4-46]
          Length = 632

 Score =  240 bits (612), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 158/637 (24%), Positives = 312/637 (48%), Gaps = 13/637 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF----VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+  R AS +W+ KI + V+F        I+G+ D +F   G++ V +VG  K+   + 
Sbjct: 1   MLQGFRAASESWLGKIVITVVFGLLIAGLAIFGIGD-IFRGGGTAAVATVGSTKISAEAV 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            ++++ ++  ++++    +  ++AR++GLD+++L  LV+ ATLDQ   ++GL      V 
Sbjct: 60  RSAYQNQIQRLARQARRPITPDQARALGLDREVLSALVTEATLDQKTRELGLRVGDDAVI 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G +  F   VF   L + G++E  ++     + +R  +       +    
Sbjct: 120 RLIKEEPAFKGANGAFDIGVFNDTLRQAGLSEAAFVQEQRAVAARLQLAESLTADLTVPL 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            + D   R+  E RS  +I+L       I  P+      ++E++K  +RAPE + ++ ++
Sbjct: 180 AVRDAIHRYTTERRSAAFILLPESAAGEIPAPTEEEARTYYEEHKGGFRAPEIRGVTILV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295
            D     K   ++ +E +A Y+ ++ +Y +PE RT++Q+VFPN+ +A  A + ++ G+  
Sbjct: 240 LDPTTLAKPDAVTAEEARARYDADRGRYGTPEKRTIQQIVFPNEADAAAALKRIRDGEAP 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  +A E+G     + LG+F++  + D ++AD+ F+L  +G  +  + G FG V+  V+ 
Sbjct: 300 FESIAGERGLDPKSLDLGTFTRAELFDPAVADAAFAL-PQGTVSEPVKGRFGTVLLRVTA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+P     F+EV   I  ++   +A + +++ +  +E+  A    + EI+R   +  + +
Sbjct: 359 IEPGSIKPFEEVADQIRTEIARERARDGLEKVHDAIEDQRAGAKPLTEIARERDLPLVTV 418

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
           P  D  G+D KG+ V  +P K+ +L  +F + +  +    +    G Y+W  +    PA 
Sbjct: 419 PATDAQGRDPKGQPVEGLPDKDAVLPAIF-RSEMGADSEALRTRAGGYLWYDVTRIDPAH 477

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
           DR L+EV   V   WK  +  + +++KA +      K G+    +    G      + + 
Sbjct: 478 DRPLDEVRDQVAAQWKADEVEKRLAAKAREAAERLDK-GETIEAVAAAYGVEARHASDLA 536

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE--KDKFISY 593
           R   ++     + + ++F+  V         + +    FKVT++ V P+    +      
Sbjct: 537 RGRAKDGLT-PESVGRIFATAVGKTGSASAGDKV-RAAFKVTSATVPPLPSGPQGGVEQQ 594

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
             Q +  D+L   IA  + Q  V+V++   +R + GE
Sbjct: 595 YRQALADDVLAEYIADAQRQAGVSVNEAAFRRAIGGE 631


>gi|192291606|ref|YP_001992211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris TIE-1]
 gi|192285355|gb|ACF01736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris TIE-1]
          Length = 629

 Score =  239 bits (611), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 165/629 (26%), Positives = 299/629 (47%), Gaps = 37/629 (5%)

Query: 5   IRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           +RKAS  W+ K    I + VL V F +WG++D +F   G ST+  +G  ++    F  ++
Sbjct: 1   MRKASSNWIGKTIMTIVMGVLIVSFGVWGIAD-VFRGFGRSTLAKIGSTEISTEQFRQTY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
              L  I ++ G  +  ++AR++G+D+++L   ++ A LD+    +GL          I 
Sbjct: 60  NDRLQQIGRQFGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTMKSIL 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F G + +F  + F   + + G  E+ Y+    ++  R  + G    G+ P   L+ 
Sbjct: 120 EDPNFKGANGQFDANRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGSLTAGLEPPKTLMQ 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              +F  E R++DY+ L +     IA PS A LT +++ +K  +RAPEY+++S+++    
Sbjct: 180 ALSQFQNEERAIDYLKLTDAQAGTIAAPSPADLTAFYDSHKAQFRAPEYRKVSFLVVTPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
              K  E+S+ + Q  +E+ K+K  +PE R + Q+VFP+ +EA  A   +  G  F  LA
Sbjct: 240 SIAKWAEVSDADAQKLFEQRKDKLSTPEKRQILQIVFPSVEEAQAARAKIASGTSFADLA 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +E+G    D+ LG  S+  + D  +A + F+L       PV  G FG V+  V+ I+P  
Sbjct: 300 KERGVKPGDLDLGLVSQSEMLDQKVAAAAFALPLNEVSQPV-QGQFGTVLLEVTKIEPGK 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
              +  V   +   +   +A ++V+E + ++E+    G S+ + +++  + ++ +  +D 
Sbjct: 359 QPDYASVAASLKRDLAQERARKQVQELHDKMEDARGGGASVVDAAKQLGLTAVTVDALDR 418

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           AG+   G  VA+IP   +L    F   +P   +  ++  +G Y+W  I    P+ +R L+
Sbjct: 419 AGRGPDGAPVASIPQGLELANAAF-NSEPGVDNDAISFQNG-YVWYDILGITPSHERPLD 476

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V+  W+  +  E++   A +LV +  + G    D+    G ++ T + I R    
Sbjct: 477 EVKDKVEAGWRAEQVTEKLRKLAAELV-QKMQGGAKLADVAP-AGVTVQTASGIKRE--- 531

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
               G D                 + N +   VF+      G VQ       Y+ ++   
Sbjct: 532 ----GADA---------------GLPNTVVDAVFRTAKDGAGQVQGGSATEWYVFRVTG- 571

Query: 601 DLLDSV-IAYLKSQYSVTVHDNLIQRYLD 628
              D+V  A L +     + DNL+QR  D
Sbjct: 572 ---DTVPTADLNAPQMQQLKDNLVQRLRD 597


>gi|209885424|ref|YP_002289281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
           carboxidovorans OM5]
 gi|209873620|gb|ACI93416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
           carboxidovorans OM5]
          Length = 704

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 171/643 (26%), Positives = 306/643 (47%), Gaps = 43/643 (6%)

Query: 1   MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IR  +      W+  +   VL + F +WG++D +F  S  +T+ +VG  ++    F
Sbjct: 71  MLRGIRNVTSNRVGKWIMSLLFGVLIISFAVWGIAD-IFKGSTQTTLATVGNTEISMEQF 129

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             ++  +L  IS++I   +N+ + R+ GLD+++L   ++ A LD+    +GL      + 
Sbjct: 130 RTAYTDKLQQISRQIRRPINANQGRAFGLDRQLLQQTIAEAALDEETRRLGLTMSDAEMI 189

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I+  P F G D KF    F + +   G  E+ Y+    ++  R ++V   V G+ PS 
Sbjct: 190 RTISGDPTFAGPDGKFDARRFAAAIRDNGYTEQRYVAEQRRVTLRRELVSSIVAGLEPSK 249

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             ++   RF  E R++DY  +       I  PS  VL  +++++K  +RAPEY+++ Y+ 
Sbjct: 250 TQIEALSRFQNEQRTIDYAKIGPEQAGTIETPSQQVLDTYYDEHKAQFRAPEYRKVVYLT 309

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
               E  KK+ +S+++ +  Y+  +++Y +P  R V Q+ FP++  A  A + +  G  F
Sbjct: 310 LSPDELAKKVAVSDEDARKVYDSRRDEYATPAKREVLQIAFPSEDAAKTAREKIAGGTSF 369

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             LA+E   +  DI+LG  S+  + D ++A + F+L       PV  G+   V+  ++ I
Sbjct: 370 EDLAKEMKLTPGDINLGLTSEASLGDPTIAKAAFALPLNEVSQPV-KGALATVLLKITKI 428

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL----EEFLALGTSMDEISRREKI-- 410
           +P    +++ V   I  ++    A ++V+ D+  L    E+  + G ++ E  ++  +  
Sbjct: 429 EPGSQSTYESVAPAIKKEI----AEQRVRADFDNLRNTIEDERSGGATIPEAGQKVGLDA 484

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD-----DPLSKDHTVALPDGSYMW 465
           V++D   +D AG+   GKE AA+P    L+   FG D     DPL+       P G  +W
Sbjct: 485 VTVD---IDRAGRTPDGKE-AALPKGVDLVTAAFGSDVGVENDPLT------FP-GGEVW 533

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
             +     +RDR L+EV   V   W+  + A  + +KA  LV E   +G  F+      G
Sbjct: 534 FDVLGVTASRDRALDEVKDQVATRWREDQVATRLRAKAKDLV-EAINKGGAFKTEATKAG 592

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS---YVVFKVTNSKVG 582
            S  T++   R D  N       +   F  P +       +NG +    VV KV N    
Sbjct: 593 LSAQTSSPFKRDDKVNGLPD-QAVDVAFRTPKDTAAT--ADNGAAGNGLVVLKVVNVTTP 649

Query: 583 PV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
            V    ++  K    L Q ++ + +   I +L+++  V V+ N
Sbjct: 650 TVDLESEDSKKMKEALEQNLSDEQIGQYITHLEAKAGVQVNQN 692


>gi|304391667|ref|ZP_07373609.1| peptidyl-prolyl cis-trans isomerse D [Ahrensia sp. R2A130]
 gi|303295896|gb|EFL90254.1| peptidyl-prolyl cis-trans isomerse D [Ahrensia sp. R2A130]
          Length = 632

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 166/640 (25%), Positives = 304/640 (47%), Gaps = 25/640 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  +R     W AKI L++L   F +WG++ ++ S   +++V +VG  KVP   F++++
Sbjct: 1   MLGALRGFVTGWTAKILLILLVASFALWGITGSILSGGDTTSVAAVGETKVPVREFLSAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            + +  + Q+ G  +  + AR  G++++ L N+V+ ATLD+F    GL     ++   IA
Sbjct: 61  NRNMNEVQQRAGRRLTRDEARIFGVEQRALGNVVAWATLDEFARVHGLALSDKQLAQMIA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P FH     ++ + F   + +  + E ++I+       R+ +   F  G    +    
Sbjct: 121 ENPAFHDSTGSYNRETFRQAVFQAQMRESDFIEAQNASAVRSQLTRSFADGPILPDTFKA 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIAD----PSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
               +  E R  +Y+ +     PAIA     P+   L  +FE  K NY APEY+++  + 
Sbjct: 181 ALANYAQEQRVFEYLTI----TPAIAGEPAAPTAEQLKTYFEANKANYAAPEYRKLDLLS 236

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
               +    +E+S++E++A+Y+    +Y  PE R V+Q+VFP+++ A+ A +SL++G  F
Sbjct: 237 LRPEDLAASMEVSDEEIEADYQARISRYQEPERRRVQQIVFPSREAAEAAKKSLEEGAFF 296

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             +  E  ++++D  LG  +K+ +P   L D  F L +    + VI G FG VI  V+ +
Sbjct: 297 ETVVAEADRTMADADLGLMAKDALP-AHLQDPAFGL-EVNAISDVIDGPFGSVIVRVTEV 354

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR--EKIVSID 414
             + T    EVK  I N M + +A+ ++    + +E+  A G+S+ E + +   KI S++
Sbjct: 355 NEARTTPLDEVKDTIKNAMALERAASRITSLSEEIEDSRAGGSSLAEAAPKFDLKIRSVE 414

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
              VD  G+   G ++  IP    LL + F + +  ++   + +    ++W  + E   A
Sbjct: 415 ---VDARGRTPDGTQLTDIPQSSDLLRQAF-ETEVGAQASALDIGAAGFVWYDVTEIAAA 470

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL----T 530
           RDR  +EV   +  DW   +  + V  KA  L       G + R++   +  S L    T
Sbjct: 471 RDRTQDEVTERLTTDWMAAERGKMVQQKAEALKARLDG-GASMRELSAEVDPSTLGAAPT 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV---GPVQEK 587
           T  +NR      F       + F G    +         + ++ KV   ++         
Sbjct: 530 TQPLNRTGTAQGFPSA-ATQEGFKGAEGHIAIVDGSEAGTSILLKVKEVRLPEAAAAPNV 588

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           D+ ++   +    DLL+ +IA L+ +Y VT +   I   L
Sbjct: 589 DQQVNIANEGAADDLLNQMIARLQGEYGVTQNPQTIDMAL 628


>gi|319898755|ref|YP_004158848.1| peptidyl-prolyl cis-trans isomerase D [Bartonella clarridgeiae 73]
 gi|319402719|emb|CBI76266.1| peptidyl-prolyl cis-trans isomerase D [Bartonella clarridgeiae 73]
          Length = 621

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 165/584 (28%), Positives = 291/584 (49%), Gaps = 36/584 (6%)

Query: 11  TWVAKIFLVVLFVPF-LIWG------LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
           +W AKIFL  L + F L+WG      +++  F  SG ST+             I++++  
Sbjct: 3   SWFAKIFLTALLLCFILLWGIPQLHTMNEKDFLTSGKSTIT------------IDTYR-- 48

Query: 64  LGMISQKIGFVVNSERARSVGLDKK--------ILDNLVSGATLDQFIEDIGLEADHGRV 115
           L +  Q +   + S   R    D+         +L+ L      D+    + +      +
Sbjct: 49  LALADQSLRLAITSHLGRMFTPDEIQRYKIPIFVLNQLQQDVLFDEQARKMKINLSKEAI 108

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I    +F  +D  F+ D+F++ L +   NE  + ++YTK   R  ++   + GM+  
Sbjct: 109 ARIIGNDNIFQ-RDRVFNRDLFLNYLQQLRTNESNFFNYYTKKEKRNQLILASLSGMKAP 167

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           ++       +  E R  DY+V++ +    IADP+  +L +WF+ +K+ +RAPEY+ +S  
Sbjct: 168 DIFYKALATYQEEKRIADYLVIDLKKEEKIADPNQEILEKWFDTHKEKFRAPEYRTVSLF 227

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                +  K  +IS +E+Q  Y +N  ++ +PE RT+E+L F  +K AD A + + +G  
Sbjct: 228 SMTSEKFLKPQDISVNEIQTYYTQNASRFITPEKRTIEKLRFSTRKAADNAAKKIAEGLS 287

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  L +E+ K+LSDI+ G  ++  +P   LA  IF L KKG  + VI+   G VI  V++
Sbjct: 288 FDALVKEEKKTLSDITKGPLAENELPS-HLASEIFEL-KKGQISAVINDLQGPVIIRVTH 345

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I PS  +  ++V+KDI   +    A   ++  Y  +E     G S+ E++++ ++ S+  
Sbjct: 346 ITPSTQIPLEKVEKDIRQILAQNNAITYIRNKYTEIENARFEGASLTELAKQHRL-SLRK 404

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
             +D  GK  +G  +  +P K+ LL  ++   + + KD  ++LP+G Y+W Q+   IPAR
Sbjct: 405 ITIDKTGKTTEGITLTDLPQKDVLLNAIYQSREDIDKD-PLSLPEGGYLWYQVDMIIPAR 463

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
            R L EV  +V   WK  +    +  KA Q VL+   +GK+   +   LG +  TT  + 
Sbjct: 464 YRTLSEVKQNVIAQWKEEEIQRLLDEKA-QGVLKQLAKGKSLDSLATELGTTKQTTPALR 522

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
           R D+ +K  G +G+  +F G  +        +  + +V+K+T S
Sbjct: 523 RQDS-SKILGIEGVKALFYGAKDHYGIVKGVDAKNRIVYKITAS 565


>gi|39935954|ref|NP_948230.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris CGA009]
 gi|39649808|emb|CAE28330.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodopseudomonas
           palustris CGA009]
          Length = 633

 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 168/637 (26%), Positives = 304/637 (47%), Gaps = 45/637 (7%)

Query: 1   MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  +RKAS  W+ K    I + VL V F +WG++D +F   G ST+  +G  ++    F
Sbjct: 1   MLRGMRKASSNWIGKTIMTIVMGVLIVSFGVWGIAD-VFRGFGRSTLAKIGSTEISTEQF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             ++   L  I ++ G  +  ++AR++G+D+++L   ++ A LD+    +GL        
Sbjct: 60  RQTYNDRLQQIGRQFGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTM 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G + +F  + F   + + G  E+ Y+    ++  R  + G    G+    
Sbjct: 120 KSILEDPNFKGANGQFDANRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGSLTAGLEAPK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L+    +F  E R++DY+ L +     IA PS A LT +++ +K  +RAPEY++IS+++
Sbjct: 180 TLMQALSQFQSEERAIDYLKLTDAQAGTIAAPSPADLTAFYDSHKAQFRAPEYRKISFLV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K  E+S+ + Q  +E+ K+K  +PE R + Q+VFP+ +EA      +  G  F
Sbjct: 240 VTPESIAKWAEVSDADAQKLFEQRKDKLSTPEKRQLLQIVFPSVEEAQAGRAKIASGTSF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             LA+E+G   +D+ LG  S+  + D  +A + F+L       PV  G FG V+  V+ I
Sbjct: 300 ADLAKERGVKPADLDLGLVSQSEMLDQKVAAAAFALPLNEVSQPV-QGQFGTVLLEVTKI 358

Query: 357 ----KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
               +P +      +K+D+A +    +A ++V+E + ++E+    G S+ + +++  + +
Sbjct: 359 ETGKQPDYASVAASLKRDLAQE----RARKQVQELHDKMEDARGGGASVVDAAKQLGLTA 414

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
           + +  +D AG+   G  VA+IP   +L    F   +P   +  ++  +G Y+W  I    
Sbjct: 415 VTVDAIDRAGRGPDGAPVASIPQGLELANAAF-NSEPGVDNDAISFQNG-YVWYDILGIT 472

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           P+ +R L+EV   V+  W+  +  E++   A +LV +  + G    D+    G ++ T +
Sbjct: 473 PSHERPLDEVKDKVEAGWRAEQVTEKLRKLAAELVQKL-QGGAKLSDVAP-AGVTVQTAS 530

Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
            I R        G D                 + N +   VF+      G VQ       
Sbjct: 531 GIKRE-------GADA---------------GLPNTVVDAVFRTAKDGAGQVQGGSATEW 568

Query: 593 YLTQMMNKDLLDSV-IAYLKSQYSVTVHDNLIQRYLD 628
           Y+ ++      D+V  A L +     + DNL+QR  D
Sbjct: 569 YVFRVTG----DTVPTADLNAPQMQQLKDNLVQRLRD 601


>gi|217976694|ref|YP_002360841.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
           silvestris BL2]
 gi|217502070|gb|ACK49479.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
           silvestris BL2]
          Length = 636

 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 169/628 (26%), Positives = 301/628 (47%), Gaps = 18/628 (2%)

Query: 1   MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+ +R A++ W+ +    I L  + + F +WG+ D +F   G++ +  VG +++   +F
Sbjct: 1   MLDAMRAATKGWIGRTVMGIVLGFIILSFAVWGIGD-IFRGFGANKLAEVGNEQITTEAF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ EL    ++    + ++ A+  GLD+++L  LVS A LDQ    +GL      + 
Sbjct: 60  RFAYQTELQRAQRQARRAITNDEAKRFGLDRQVLSRLVSEAVLDQETHALGLAMSDAEIA 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             IA  P F G   +F    F   L   G+ EK ++     +  R +++     G++   
Sbjct: 120 RTIAADPSFKGASGQFDRARFEELLRDNGLTEKAFVREQRGVYLRQELIDSMTNGLQLPK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +L+   R+  E R++DY VL       IA PS+  L ++FE  K  Y APEY+ +  + 
Sbjct: 180 AMLELIHRYQTETRTLDYFVLPAAAAGTIALPSDDELGKYFEDRKLGYSAPEYRTLVTLT 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                  K   +S+ +    Y++ K EKY +PE R ++QL F +   A  A + L  G  
Sbjct: 240 LTPESIAKPDAVSDADALRRYDEIKGEKYGAPEKRQIDQLFFSDPAAAAAAREKLDAGAS 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  +  +QG ++ D+SLG  ++  + D ++AD  F+L +     PV    FG V+  V+ 
Sbjct: 300 FEDIVAQQGSTMKDVSLGLVTRGQLIDKAVADVAFALPESAVSAPV-KTQFGSVLIRVAA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+PS    F++VK++I  ++  T+A  ++   +  +E+  A G ++ E ++   +    +
Sbjct: 359 IEPSSAKPFEDVKEEIKREIATTRARGEIARLHDAIEDQRASGKTLTEAAKSAGLEVRVI 418

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH-TVALPDGSYMWVQIKESIPA 474
           P VD  GKD  G  +A +     LL   F  D  L  D+ T++LP G Y W ++ +   A
Sbjct: 419 PAVDAGGKDAAGVPIADLANSAALLKAGFASD--LGVDNETLSLPQGGYQWFEVGKIDRA 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           R +  EE    V+K W+  +TA+ +++K   L     + G+    +    G  +     +
Sbjct: 477 RQKSFEEAKPAVEKAWRDDETAKLMTAKTIDLTKRL-ESGEPMAKVAAEGGFEVKRAQNV 535

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
            R   +N  F    ++Q F+  V  V    +E G   +VFKV  +   P+   D  +  L
Sbjct: 536 RRGGGDN--FPQPAVAQAFNVGVGGVGSTRLEAG-DRLVFKVAGATAPPIDFADATLVSL 592

Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
              + K   D ++    +QY  T+ + L
Sbjct: 593 ANEVKKSYSDDLV----TQYLGTLQNKL 616


>gi|163854063|ref|YP_001642106.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           extorquens PA1]
 gi|163665668|gb|ABY33035.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           extorquens PA1]
          Length = 634

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 169/645 (26%), Positives = 312/645 (48%), Gaps = 27/645 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-----SGSSTVV-SVGRQKVPFS 54
           ML+ IR AS+ W+ K+ L V+F  FLI G+  A+F V      GSST V +VG+  +   
Sbjct: 1   MLQSIRSASQHWLGKVVLSVIFT-FLIAGV--AIFGVEEFFRGGSSTAVATVGKTPISAE 57

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
               +++ +L     ++   +  ++AR++GL++++L  L++ A LDQ   D+GL      
Sbjct: 58  EVRTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDAT 117

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V   I   P F   +  F   +F   L R G+NE  ++     +++R  +    V  M  
Sbjct: 118 VLRAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPV 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
              + +   R+  E R    + L       I  P++  LT ++E  K ++RAPEY+ ++ 
Sbjct: 178 PQAIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALTTYYENNKASFRAPEYRSLNL 237

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           ++ D     K  E+S+DE +  Y+ N  ++   E RT++Q+ FP++  A EA   ++ G+
Sbjct: 238 LVLDPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGE 297

Query: 295 -KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             F  +A ++G     + LG+ +K  + D ++ ++ F+L ++G  +  + G FG V+  V
Sbjct: 298 TPFETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRV 356

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS----EKVKEDYKRLEEFLALGTSMDEISRREK 409
           + I+P     F EVK +I  ++ + +      +KV++    +E+  A    + EI++ + 
Sbjct: 357 TAIEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQD---AIEDARASAKPLAEIAKDQG 413

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
           +  + +P VD  G D  G+ VA IP KE  L   F + D  +    +    G  +W  + 
Sbjct: 414 LTLLSIPAVDAQGNDPSGQPVAGIPDKETTLPAAF-RADVGNDTEVLRTKAGGAIWYDVV 472

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +  P+ ++ L EV  +V K W   +  + + +K+ +L     K G+    + +  G  L 
Sbjct: 473 KIDPSHEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQEAGVPLK 531

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE 586
           T  +I R   ++     + + ++F+ PV      P   G +  VFKVT + +    P   
Sbjct: 532 TITEIGRNQAKDD-LSTEIVERIFTTPVGKAASAPAGEGRA--VFKVTAATMPAFVPGTP 588

Query: 587 KD-KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
            D + ++ L   +  D+L   IA ++    V V+   ++R   GE
Sbjct: 589 SDGQLVTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633


>gi|188584391|ref|YP_001927836.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           populi BJ001]
 gi|179347889|gb|ACB83301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           populi BJ001]
          Length = 634

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 165/647 (25%), Positives = 311/647 (48%), Gaps = 31/647 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+ IR AS+ W+ K+ L V+F  FLI G++    +  F    S+TV +VG+  +     
Sbjct: 1   MLQSIRSASQHWLGKVVLTVIFT-FLIAGVAIFGVEEFFRGGSSTTVATVGKTPISAEEV 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ +L     ++   +  ++AR++GL++++L  L++ A LDQ   D+GL      V 
Sbjct: 60  RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTADLGLAVSDAAVL 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   +  F   +F   L R G+NE  ++     +++R  +    V  +    
Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAELPVPQ 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            + +   R+  E R    + L       I  P+   L+ +++  K ++RAPEY+ ++ ++
Sbjct: 180 AMREAVHRYSTERRDAAVLTLAPSVAGEIPAPTEEELSAYYDNNKASFRAPEYRSLNLLV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
            D     K  E+S +E +  Y+ N  ++  PE RT++Q+ FP++  A EA   ++ G+  
Sbjct: 240 LDPAALAKPDEVSEEEARKVYDANHSRFGKPERRTIQQISFPDEAAAKEARAKIESGETP 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  +A  +G     + LG+ +K  + D ++ D+ F+L ++G  +  + G FG V+  V+ 
Sbjct: 300 FETVAAARGLDPKQLDLGTLTKAELFDPAVGDAAFAL-EQGKVSEPVKGRFGTVLLRVTA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKAS----EKVKEDYKRLEEFLALGTSMDEISRREKIV 411
           I+P     F EVK +I  ++ + +      +KV++    +E+  A    + EI++ + + 
Sbjct: 359 IEPGTVKPFDEVKDEIRREIALKRVRDGGFDKVQD---AIEDARASAKPLAEIAKDQGLT 415

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGSYMWVQ 467
            + +P VD  G D  G+ VA IP KE  L   F    G D  + +  T     G  +W  
Sbjct: 416 LLSIPAVDAQGNDPSGQPVAGIPDKETTLPAAFRADVGNDTEVLRTKT-----GGAIWYD 470

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + +  P+ ++ L EV  +  K W   +  + + +K+ +L  E  ++G+    + +  G  
Sbjct: 471 VVKIDPSHEKPLAEVRDEAVKGWTRAEVEKRLVAKSKELT-ERLEKGEAIETLAQEAGLP 529

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PV 584
           L T  +I R   ++     + + ++F+ PV      P  +G    VFKVT + +    P 
Sbjct: 530 LKTVGEIARNQTKDD-LSTEIVERIFATPVGKAASAP--SGEGRAVFKVTAATMPAFVPG 586

Query: 585 QEKD-KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
              D + ++ L   +  D+L   IA ++    V V+   ++R L GE
Sbjct: 587 TPSDTQLVASLRTAIADDVLAEFIAEVQKSAGVNVNQTALRRALGGE 633


>gi|298291797|ref|YP_003693736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM
           506]
 gi|296928308|gb|ADH89117.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM
           506]
          Length = 629

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 178/628 (28%), Positives = 301/628 (47%), Gaps = 22/628 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE +RK++   VAKI + +L V F IWG++D +F   GS T+ ++G  ++    F   +
Sbjct: 1   MLETLRKSASGIVAKILMGLLIVSFGIWGIAD-VFRGFGSQTLATIGDTEITVPEFRQLY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q L  +SQ++   +  E+AR+ G+  ++L   ++ A L+   + +GL      +   + 
Sbjct: 60  QQRLQQVSQQLKRGITPEQARAFGIPDQLLQEQLAEAALNDQAKSLGLALSDAEIARRVQ 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P F G    F  + F   L   G  E  +++    +  R  ++    GG+    +L D
Sbjct: 120 SNPSFFGPGGSFDPNYFNQLLRSNGFTEARFVEAERGLAVRQQLIQSLGGGVTVPQVLKD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R+  E RSV+Y +L    +PA+A+PS+  L ++F++ K  +RAPEY+++S ++    
Sbjct: 180 ALARYESEERSVNYAMLTAHALPALAEPSDEELRKFFDERKIAFRAPEYRKVSVLVLTPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  IS+ +++A Y+ N   Y +PE R V+Q+VFPN++EA  A   +  G  F  + 
Sbjct: 240 ALANSESISDADVEAAYKANLASYGTPEKRVVQQIVFPNEQEAAAAAARITAGTPFADII 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E+     D+ LG  ++  I D ++AD+ F+LA     + V+ G FG VI HV  + P  
Sbjct: 300 AERKLEAKDVELGDVTRADIFDKAVADAAFALAPDAT-SGVVAGRFGPVIVHVGTVTPGT 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV--SIDLPLV 418
           T    EV   I  Q+++  A   V   Y ++E+  A G  + EI+ +  I   S D    
Sbjct: 359 TKPLTEVAGQIRTQLQLDTARRAVLTKYDQIEDERAGGAMLAEIASKAGIPVQSFD---T 415

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP-DGSYMWVQIKESIPARDR 477
           +  G+   G  + +IP + ++L   F  D   S +  V LP +G Y+W  +      RDR
Sbjct: 416 NIQGQTPDGSSIPSIPGRAEVLRGAFAADVG-SDNDPVQLPQNGGYVWFAVDGITAPRDR 474

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             EE    V   WK  +TA+ +  K   +  + +  G+ F     + G  L   N + R 
Sbjct: 475 TFEEARAQVLDRWKQDQTAQALDKKVEDIKAKVAG-GEAFDKAVTDAGLELRAANGLRRG 533

Query: 538 DNENKFFGYDGISQ-----VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-KFI 591
                    DG+ Q     VF  P   V     E G S ++F+V    V P   +D K +
Sbjct: 534 R------AADGVPQDILEAVFETPQGQVGSSLAEGGESRLLFQVLRVSVPPAATQDEKLL 587

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
           S + Q +  DL+   +  L+ Q    ++
Sbjct: 588 SDVRQSLENDLMTEYVVELQGQLGPRIN 615


>gi|218533006|ref|YP_002423822.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           chloromethanicum CM4]
 gi|218525309|gb|ACK85894.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           chloromethanicum CM4]
          Length = 634

 Score =  233 bits (594), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 168/645 (26%), Positives = 311/645 (48%), Gaps = 27/645 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-----SGSSTVV-SVGRQKVPFS 54
           ML+ IR AS+ W+ K+ L V+F  FLI G+  A+F V      GSST V +VG+  +   
Sbjct: 1   MLQSIRSASQHWLGKVVLSVIFT-FLIAGV--AIFGVEEFFRGGSSTAVATVGKTPISAE 57

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
               +++ +L     ++   +  ++AR++GL++++L  L++ A LDQ   D+GL      
Sbjct: 58  EVRTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDAT 117

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V   I   P F   +  F   +F   L R G+NE  ++     +++R  +    V  M  
Sbjct: 118 VLRAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPV 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
              + +   R+  E R    + L       I  P++  L  ++E  K ++RAPEY+ ++ 
Sbjct: 178 PQAIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNL 237

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           ++ D     K  E+S+DE +  Y+ N  ++   E RT++Q+ FP++  A EA   ++ G+
Sbjct: 238 LVLDPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGE 297

Query: 295 -KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             F  +A ++G     + LG+ +K  + D ++ ++ F+L ++G  +  + G FG V+  V
Sbjct: 298 TPFETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRV 356

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS----EKVKEDYKRLEEFLALGTSMDEISRREK 409
           + I+P     F EVK +I  ++ + +      +KV++    +E+  A    + EI++ + 
Sbjct: 357 TAIEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQD---AIEDARASAKPLAEIAKDQG 413

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
           +  + +P VD  G D  G+ VA IP KE  L   F + D  +    +    G  +W  + 
Sbjct: 414 LTLVSIPAVDAQGNDPSGQPVAGIPDKETTLPAAF-RADVGNDTEVLRTKAGGAIWYDVV 472

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +  P+ ++ L EV  +V K W   +  + + +K+ +L     K G+    + +  G  L 
Sbjct: 473 KIDPSHEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQETGVPLK 531

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE 586
           T  +I R   ++     + + ++F+ PV      P   G +  VFKVT + +    P   
Sbjct: 532 TITEIGRNQAKDD-LSTEIVERIFTTPVGKAASAPAGEGRA--VFKVTAATMPAFVPGTP 588

Query: 587 KD-KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
            D + ++ L   +  D+L   IA ++    V V+   ++R   GE
Sbjct: 589 SDGQLVTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633


>gi|240141517|ref|YP_002965997.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium
           extorquens AM1]
 gi|240011494|gb|ACS42720.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium
           extorquens AM1]
          Length = 634

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 168/645 (26%), Positives = 311/645 (48%), Gaps = 27/645 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-----SGSSTVV-SVGRQKVPFS 54
           ML+ IR AS+ W+ K+ L V+F  FLI G+  A+F V      GSST V +VG+  +   
Sbjct: 1   MLQSIRSASQHWLGKVVLSVIFT-FLIAGV--AIFGVEEFFRGGSSTAVATVGKTPISAE 57

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
               +++ +L     ++   +  ++AR++GL++++L  L++ A LDQ   D+GL      
Sbjct: 58  EVRTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDAT 117

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V   I   P F   +  F   +F   L R G+NE  ++     +++R  +    V  M  
Sbjct: 118 VLRAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMLV 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
              + +   R+  E R    + L       I  P++  L  ++E  K ++RAPEY+ ++ 
Sbjct: 178 PQAIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNL 237

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           ++ D     K  E+S+DE +  Y+ N  ++   E RT++Q+ FP++  A EA   ++ G+
Sbjct: 238 LVLDPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGE 297

Query: 295 K-FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             F  +A ++G     + LG+ +K  + D ++ ++ F+L ++G  +  + G FG V+  V
Sbjct: 298 SPFETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRV 356

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS----EKVKEDYKRLEEFLALGTSMDEISRREK 409
           + I+P     F EVK +I  ++ + +      +KV++    +E+  A    + EI++ + 
Sbjct: 357 TAIEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQD---AIEDARASAKPLAEIAKDQG 413

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
           +  + +P VD  G D  G+ VA IP KE  L   F + D  +    +    G  +W  + 
Sbjct: 414 LTLLSIPAVDAQGNDPSGQPVAGIPDKESTLPAAF-RADVGNDTEVLRTKAGGAIWYDVV 472

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +  P+ ++ L EV  +V K W   +  + + +K+ +L     K G+    + +  G  L 
Sbjct: 473 KIDPSHEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQEAGVPLK 531

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE 586
           T  +I R   ++     + + ++F+ PV      P   G +  VFKVT + +    P   
Sbjct: 532 TITEIGRNQAKDD-LSTEIVERIFTTPVGKAASAPAGEGRA--VFKVTAATMPAFVPGTP 588

Query: 587 KD-KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
            D + ++ L   +  D+L   IA ++    V V+   ++R   GE
Sbjct: 589 SDGQLVTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633


>gi|114707419|ref|ZP_01440315.1| peptidyl-prolyl cis-trans isomerase D [Fulvimarina pelagi HTCC2506]
 gi|114536978|gb|EAU40106.1| peptidyl-prolyl cis-trans isomerase D [Fulvimarina pelagi HTCC2506]
          Length = 629

 Score =  230 bits (586), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 171/627 (27%), Positives = 293/627 (46%), Gaps = 8/627 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  +RKA+  W AKI L +L + F +WG+ D +F     + V+SVG   VP + +  ++
Sbjct: 1   MLNSLRKATTGWTAKILLGLLVISFAVWGIGD-VFRSGNQNAVLSVGETDVPLAEYALTY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            Q    I++++G  +  E A + G+D+ +L  LVSGA L +   +IGL     R+   IA
Sbjct: 60  NQASSGIARQLGRPLTPEEAATFGIDQAVLSQLVSGAVLTEQARNIGLGISDERLARLIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F      FS   F + L +  + E +YI+       RT +V     G+       +
Sbjct: 120 DDPSFQDASGNFSRAQFRNLLNQARLRESDYIEFQEDAAMRTQIVDAVSNGITLPKAYEE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               F  E R+V YI +    + +  +PS+  L  +FE+ K +Y APEY+ ++       
Sbjct: 180 ALGLFNGERRNVSYISVGPGALESEPEPSDEALQAYFEENKQDYAAPEYRGLAVARLTRE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
               +  I+++++ A+YE+ + +Y   E R V Q+VF ++  A EA + L  G  F  +A
Sbjct: 240 TIADESAITDEQVAADYEQYQSRYGEAERRQVSQIVFGDEAAATEAAEKLANGATFENVA 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
              GK+ +D ++G  ++E IPD S+ D+ F+L + G  + VI G FG  I  VS I+ + 
Sbjct: 300 RAAGKNPADTAIGLVTREDIPDPSIRDAAFAL-ESGQTSDVIDGRFGPTIVRVSEIQEAS 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
               +EV  DI   + +  AS+ +   Y+  E+  A G + +E ++   +       VD 
Sbjct: 359 VTPLEEVAGDIRRDLALNNASDTLNAAYQTYEDARASGATFEEATQEAGLKVETYEAVDS 418

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G++  G+ +  I     LL   F + +P   +  +   D  Y++  + +  PARDR L+
Sbjct: 419 QGRNPSGEAIEGISGNGDLLEEAF-QTEPGFDNIPITTEDNGYLFFDVTDIQPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V  DW   +T   V  +A  L  E    GK+  +I +  G  + +   I R    
Sbjct: 478 EVRQQVVDDWTRDETLRLVEERAAALAEEARG-GKSLENIAEENGLEVASAVGITRQSGA 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV--TNSKVGPVQEKDKF-ISYLTQM 597
            +       +   SG    V        L  VV K+        P+   ++  I  +   
Sbjct: 537 GEIGAQASQAAFASGQ-GSVAAAKGRGELEQVVLKIDEVAPPAAPLDNVNRTQIGQVQTG 595

Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +  DL+ S +  ++ +Y + ++ N I+
Sbjct: 596 LTNDLVQSYVTRVQGEYPLQIYPNGIE 622


>gi|299134975|ref|ZP_07028166.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
 gi|298589952|gb|EFI50156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
          Length = 617

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 166/627 (26%), Positives = 299/627 (47%), Gaps = 43/627 (6%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +   +L V F +WG++D +F  S  +T+ +VG   +P   F +++  +L  IS++I   +
Sbjct: 3   VLFGILIVSFAVWGIAD-IFKGSTQTTLATVGNTDIPLEQFRSAYTDKLQQISRQIRRPL 61

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
              + R+ G+D+++L   ++   LD+    +GL      +   I+  P F G + KF   
Sbjct: 62  TPTQGRAFGIDRQLLQQTIAETALDEEGRRMGLRMSDAEIVRTISSDPTFAGPNGKFDPA 121

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
            F   +      E+ YI    ++  R +++G  V G+ P+   ++   RF  E R++DY 
Sbjct: 122 RFAMAMRDYSYTEQRYIAEQRRLTLRRELIGSIVAGVEPTKTQIEAISRFQDEQRTIDYA 181

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
            +       I  PS   L  +FE +K  +RAPEY+++ Y+     E  KK+ +S+D+ + 
Sbjct: 182 KIGPDQAGTIEAPSPDALNTYFEAHKAQFRAPEYRKVVYLTLSPDELAKKVVVSDDDARK 241

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
            Y+  +  Y  P+ R V+Q+ F ++  A  A   +  G  F  LA++   +  D++LG  
Sbjct: 242 VYDSRRADYVKPDRREVQQIAFQSEDAAKAARAKIAGGMSFEDLAKDMKLTSGDMNLGLV 301

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           S++ + D  +A + F+L       PV  G+   V+  V+ I+P  T +F++V   I  ++
Sbjct: 302 SEKSLGDPIIAKAAFALPLNEVSQPV-KGALATVLLKVTKIEPGSTEAFEKVAPAIKKEI 360

Query: 376 RITKASEKVKEDYKRL----EEFLALGTSMDEISRREKI--VSIDLPLVDFAGKDVKGKE 429
               A ++V+ D+ ++    E+  + G S+ E +++  +   ++D   VD +G+   GKE
Sbjct: 361 ----AEQRVRTDFDKMRNAVEDERSGGASIAEAAQKSGLEATTVD---VDRSGRTPDGKE 413

Query: 430 VAAIPYKEQLLFRVFGKD-----DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
            AA+P    L+   FG D     DPL+       P G  +W  +    P+RDR L+EV  
Sbjct: 414 -AALPKGVDLITAAFGSDVGVDNDPLT------FP-GGEVWFDVLGITPSRDRTLDEVKD 465

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
            V   W+  + A  + +KA +LV + +K G         + A+ LTT        E+K  
Sbjct: 466 QVTARWRDEQVATRLRAKAKELVEKINKGGV----FATEVKAAGLTTQTSTPFKREDKVN 521

Query: 545 GY-----DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFISYLT 595
           G      D   +   G   M +  P  +G+  VVF+VTN     V        K    L 
Sbjct: 522 GLPDIVVDTAFRTAKGSAAMAENIPASSGV--VVFQVTNVATPAVDLNSDASKKMKEGLA 579

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNL 622
           Q ++ + +   I +L++   V V++N+
Sbjct: 580 QNLSDEQIGQYITHLETTLGVKVNENV 606


>gi|296446388|ref|ZP_06888333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
 gi|296256161|gb|EFH03243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
          Length = 635

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 174/641 (27%), Positives = 307/641 (47%), Gaps = 18/641 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF----VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           MLE +R AS+  + ++ L ++     + F +WG+ D +F    +  +  VG  ++   ++
Sbjct: 1   MLEGLRIASQHRIGRVILGIVMGFIALSFAVWGIGD-VFRGFSTKRLAKVGSGEITVEAY 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ EL  + Q+    + +E AR  GLD+++L  +++  TLDQ    +GL      V 
Sbjct: 60  RGAYQNELRRLQQRARRAITNEEARRYGLDEQVLQRMITELTLDQKARALGLAIGDPDVL 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             +    +F G   KF  D F   L   G  E+ ++        R ++    VG M P  
Sbjct: 120 KLVRDENVFKGPTGKFDSDRFKQILRDAGYTERSFLAEQKSGYVRKELTDSVVGAMEPPQ 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
           L+L+   RF  E R VDY  L       IA PS   L ++FE  + ++RA EY+R+  + 
Sbjct: 180 LVLEALHRFRNEARDVDYFELPAAAAGEIAAPSEEELKKYFEDREQSFRAKEYRRLVILA 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEK-YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                  K  E+S +E +  Y++ K K Y + E R + QL+F  + EAD A + L+ G  
Sbjct: 240 ATPASLAKPQEVSEEEARKLYDEVKTKRYGTAEKRHLRQLLFAAKDEADAALKRLEGGLS 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  LA E+  +  DI LG    + + ++ L+D +F+  K G   PV   +FGY I  +  
Sbjct: 300 FEALATERKLATKDIDLGLLEAKDLGEIKLSDKVFAPEKPGFVGPV-QTAFGYAILEIEK 358

Query: 356 IKPS-FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           I PS  T SF++ + ++  ++   +A+ +V++ +  +E+  A G ++ E ++   +  + 
Sbjct: 359 IVPSVVTRSFEQTRDELRGEIARERAAPQVQKVHDAIEDQRAGGKALAEAAKSLGLEVVA 418

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           +   D +G+D  G+E+ ++   E LL   F  D  +  D TVA  DG Y+W ++ +  PA
Sbjct: 419 VEATDASGRDKAGQEIPSVFGSEDLLKAAFASDVGVDND-TVATRDGGYLWFEVAKVEPA 477

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           R R  EE   +V+   +  +  + +++KA+ L  E  + GK   D+ K+ GA     N +
Sbjct: 478 RQRSFEEAKPNVEIAVREERLQKALAAKADALAAEL-RAGKTIADVAKSAGAESRRANDV 536

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKF 590
            R    N       I  VF  PV       ++ G   +VF+V N+   P      E    
Sbjct: 537 KRAP--NPAIPNAAIIAVFDTPVHGAGSVAVDGG--RLVFRVENATTQPYDASSLEAKAA 592

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
              +      D+L+  +  L+  Y+V+++   ++    GE+
Sbjct: 593 AEQMKPAFTNDILEQYVGALEKIYNVSINQKALEAATGGEQ 633


>gi|328543803|ref|YP_004303912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [polymorphum gilvum
           SL003B-26A1]
 gi|326413547|gb|ADZ70610.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polymorphum gilvum
           SL003B-26A1]
          Length = 630

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 145/540 (26%), Positives = 270/540 (50%), Gaps = 13/540 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK + T+VAKIF+ +L + F +WG++D +F   G +    VG  ++   SF  ++
Sbjct: 1   MLDALRKGAGTFVAKIFIALLILSFAVWGIAD-IFQGFGRNVAARVGDTEISLQSFDQAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++EL  +S++IG  +++     +GL +++L  LV+ A LD     + L      +   I 
Sbjct: 60  RRELSALSRQIGRPLSTTEGAQIGLPQQVLGRLVAEAALDDDARAMTLGISDAELIRVIQ 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P+F      F        L   GI+E +Y+    ++  R  +     G +    +LL+
Sbjct: 120 ADPVFQRPGGGFDRARLAQLLRANGISEDDYVVERRRLAERQQIAEALSGSLISPQVLLE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E R+V Y++L    V +IA+P +A L  +F+  +  +RAPEY+R++ +     
Sbjct: 180 AFNAYQNETRTVRYLLLTPAAVGSIAEPDDAALEAYFDDNRAAFRAPEYRRLALLELTPD 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
              +  E+++ + ++ YE+   ++   E R V Q+ FP+   A  A + L  G  F +L 
Sbjct: 240 AVARPDEVTDADARSAYERAGSRFSEDERRRVRQMPFPDADAARAAAERLASGASFAELM 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E+  + +D+ LG   K    D ++A++ F+L  +G  +  + G F  VI   + I+P+ 
Sbjct: 300 AERNLAEADVDLGLMRKSDFLDPAIAEAAFAL-DEGAVSGAVEGRFATVILEAAEIRPAA 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T  F+EV+ ++  ++   +A  +V + +  +E+  A G ++ EI+ R K+     P +D 
Sbjct: 359 TRPFEEVRDELKQEIARERAEREVLDIHDEIEDARAGGAALAEIAERFKLALATPPALDA 418

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            GK   G  V ++P  + LL   F  D  +  D  + L +  ++W ++ E IPARDR L+
Sbjct: 419 TGKAETGATV-SLPDGDGLLREAFDSDVGIEND-PLPLGERGFVWYEVAEVIPARDRPLD 476

Query: 481 EVLTDVKKDWKTV----KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           EV   V   W       + A+  +  A++L     K G++   +  +LG  + T+  + R
Sbjct: 477 EVRPSVVIAWGAAERIKRLADLSAGTADRL-----KAGESLDVVAADLGLEVKTSAPLKR 531


>gi|121602029|ref|YP_988842.1| hypothetical protein BARBAKC583_0527 [Bartonella bacilliformis
           KC583]
 gi|120614206|gb|ABM44807.1| conserved hypothetical protein [Bartonella bacilliformis KC583]
          Length = 629

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/590 (26%), Positives = 290/590 (49%), Gaps = 24/590 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSF--- 56
           ML+ IR  + +WV KIF  +L + F+ +WG+     ++   S +++ G+  +    +   
Sbjct: 1   MLDSIRNTTNSWVTKIFFAILLLCFVFLWGIPQ--LNIKNESNLLTSGKSVITVDDYRLA 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           +  +   L + SQ +G +++ +  +  G+   +   L      D+    + +      + 
Sbjct: 59  LADYSLRLALASQ-LGRMLSPDEIQQYGIPAFVFYQLQQDILFDEQARKMKISLSQDALA 117

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I+   +F    N F+ ++F++ L +  I++  ++D+YT+   R  ++   + G +  N
Sbjct: 118 HIISSDSIFQTNGN-FNRNLFLNYLQQLNISQSHFLDYYTQREKRNQLILASLSGAKIPN 176

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
           L  +       E R+ DY+V+N      I+ P+   L +WF+ +++ +RAPEY+ +S + 
Sbjct: 177 LFYEAFALHREEKRTADYLVVNLEKEKKISTPNKETLQKWFDTHRNMFRAPEYRTVSLLS 236

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
              ++  K   IS +E    Y +N  ++  PE R +E+L FP ++ AD+A Q +  G  F
Sbjct: 237 ITPNDFVKLENISANEAMTYYNQNASRFTVPEKRIIEELRFPTREAADKAAQKIANGMSF 296

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            QL + + K+L DI  G  ++  +P+  LA  IF L K+G  + VI+   G +I  V  I
Sbjct: 297 DQLVQSEKKTLKDIKKGPLAESELPNY-LASDIFEL-KQGQISAVINDLQGPIIVRVMQI 354

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
            PS  + F+++++DI   +   +A   ++  Y  +E     G S+ E++ +  + S+   
Sbjct: 355 IPSGPIPFEDIEQDIRQTLAQNRAVTDLRSKYTEIENARFEGASLKELADQYNL-SLRQI 413

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD-----DPLSKDHTVALPDGSYMWVQIKES 471
            +D  GK ++G  +  +P KE +L  ++        DPLS      L +G Y+W Q+   
Sbjct: 414 TIDKEGKTIEGVMLTDLPQKEIVLSAIYQATEGSELDPLS------LQEGGYLWYQVDAI 467

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            PARD+ LEEV  +   +WK  K  + +  KAN  +L+   EGK+   +   L     TT
Sbjct: 468 TPARDKALEEVEKEAVAEWKNAKIQQLLDEKANN-ILKQLTEGKSLDSLAAKLSVKKKTT 526

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
             + R D+ +   G +G+  +FSGP             + +++K+T S +
Sbjct: 527 PALRRQDSSD-ILGIEGVKALFSGPKGHYGIIKGAVATNRIIYKITESSI 575


>gi|319408341|emb|CBI81994.1| conserved exported hypothetical protein [Bartonella schoenbuchensis
           R1]
          Length = 628

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 161/595 (27%), Positives = 290/595 (48%), Gaps = 34/595 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+ +R A  +W A++F  +L + F+ +WG+        G   +++ G+  +   ++   
Sbjct: 1   MLDTLRSAKNSWFARLFFAILLLCFIFLWGIPQ--LYTQGERDLLTSGKSTITVDTY--- 55

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
               L +  Q +   +NS   R +   ++I    +S   L+Q  +D+       ++   +
Sbjct: 56  ---RLALADQSLRLALNSHLGR-MFTPEEIQQYRISAFVLNQLQQDVLFNEQARKMKINL 111

Query: 120 ARSPLFHG--------KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
           ++  +           ++  FS D+F++ L +  +N+ ++ D+YT+   R  +    + G
Sbjct: 112 SKDMIAQAISADNIFQENGAFSRDLFLNFLQQLRVNQNDFFDYYTQKEKRNQLTLALLSG 171

Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           M+  +L       +  E R  DY ++N +   + ADP    L +WF+ +K+ +RAPEY+ 
Sbjct: 172 MKVPDLFYKAFAIYQEETRIADYFIVNLKEKESTADPDQKTLQKWFDTHKNAFRAPEYRT 231

Query: 232 ISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           +S +L    EK  ++E IS DE +  Y +N  ++ +PE R +E+L FP +K ADEA + +
Sbjct: 232 VS-LLSITPEKLVQLEDISKDEAKTYYTQNISRFTTPEKRIIEELRFPTRKAADEAAKKI 290

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             G  F  L + + K+L+DI  G   K   P+  L   IF L KKG  + VI    G VI
Sbjct: 291 ADGLSFDDLVKAEKKTLNDIKKGPLVKSERPNY-LESEIFEL-KKGQVSTVIDDLQGPVI 348

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
             V +I PS  + F+ V+K+I   +   +A+  +   Y  +E     G S+ EI+ +   
Sbjct: 349 IRVIDITPSSPIPFETVEKNIRQTLAQNRAATDMHNKYTEIENARFEGASLKEIADQ--- 405

Query: 411 VSIDLPL----VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
              +LPL    +D  G  ++G  +  +P K+ LL  ++  +     D  ++L +G Y+W 
Sbjct: 406 --YNLPLRKVTIDKKGITIEGITLTDLPEKDILLDAIYQANVETEPD-LLSLQEGGYLWY 462

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           Q+   IP+RDR LEEV  D    WK+ +    +  KA   + + +K GK+   +    G 
Sbjct: 463 QVDTIIPSRDRALEEVKQDAIAQWKSEEIQRLLDEKAENALKQLNK-GKSLDSLAAEFGV 521

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
              TT  + R D+ ++ FG++ I  +FS P             + +V+K+T S +
Sbjct: 522 KKQTTQALRRQDS-SEVFGFEDIKALFSKPKGHYGIAKGTLTTNRIVYKITASAI 575


>gi|49474119|ref|YP_032161.1| peptidyl-prolyl cis-trans isomerase protein [Bartonella quintana
           str. Toulouse]
 gi|49239623|emb|CAF25982.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella quintana
           str. Toulouse]
          Length = 629

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 164/596 (27%), Positives = 289/596 (48%), Gaps = 35/596 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSF--- 56
           ML IIR A+ +WVA+IFLV L + F+ +WG+            ++S G   +    +   
Sbjct: 1   MLNIIRNATNSWVARIFLVSLLLCFIFLWGIPQ--LHTKSERDLISSGESTITVDDYHLA 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           +      L + S  +G +      +   +   +   L      D+    + +      + 
Sbjct: 59  LADQSSRLALASH-LGRMFTPNEMQQYQIPTFVFSQLQQDVLFDEETRQMKINLSKDAIA 117

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             +    +F   +  F+ ++F + L +  I+E  ++D+YTK   R  ++   + GM+  +
Sbjct: 118 RSLGADNMFQ-INGVFNQNLFRNYLQQLHISESNFLDYYTKKEKRKQLIAASLSGMKAPD 176

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
                   +  E R  DY+VL+ +    I+DP    L +WFE +K+ +R PEY+ +S + 
Sbjct: 177 FFYKALALYQGETRIADYLVLDLKEKKTISDPDQETLQKWFETHKNEFRVPEYRTVSLLS 236

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
             + +  K  +IS DE +A Y +N  ++ +PE RT+E+L FP ++ AD A + +  G  F
Sbjct: 237 MKLAKFIKPEDISEDEARAYYTQNTSRFIAPEKRTIEELRFPTREAADNAAKKIADGLSF 296

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             L + + K+L+DI  G  ++  +P+  LA  IF L K+G  + VI+   G VI  V++I
Sbjct: 297 DDLVKAEKKTLNDIKKGPLAESELPN-RLASEIFEL-KQGQVSAVINDLQGPVIIRVTSI 354

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
            PS  + F+ V+++I   +   +A++ ++ +Y  +E     G S+ E++ + K     LP
Sbjct: 355 VPSSPIPFENVEENIRQMLAKNRAADDMRNNYTAIENARFEGASLKELADQYK-----LP 409

Query: 417 L----VDFAGKDVKGKEVAAIPYKEQLLFRVF----GKD-DPLSKDHTVALPDGSYMWVQ 467
           L    +D  GK  +G  +  +P K+ LL  ++    G D DPLS      L  G Y+W +
Sbjct: 410 LRTITIDKTGKTSEGTILIDLPEKDILLNSIYQSNEGADLDPLS------LQGGGYLWYK 463

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           +   IPARD+  EE   +    WK+ +    +  KA    L+    G++   +   LG +
Sbjct: 464 VDTIIPARDKTFEEAKQNAIVQWKSEEIQRLLDEKAKD-ALKQLTAGQSLVSLAHILGVT 522

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSK 580
             TT  + R D+ ++ FG +GI  +FS   G   +VK     N + Y + +VT  K
Sbjct: 523 KQTTQPLRRQDS-SEIFGLEGIKALFSDSKGHYGIVKGPVATNRILYQIKEVTMPK 577


>gi|83310913|ref|YP_421177.1| parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
 gi|82945754|dbj|BAE50618.1| Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
          Length = 623

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 160/634 (25%), Positives = 292/634 (46%), Gaps = 22/634 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML++ R AS+TW+ ++   +L + F+ WG  D +    G S  + +GR  +  +  +  +
Sbjct: 1   MLDVFRTASKTWIVRLLFALLALSFVAWGAGDVVRGGVGRSPAIEIGRTSMSAAEVMGEF 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           K+E+  +    G  + +E AR +G+  + +D+L++   +D+    +GL A    +   +A
Sbjct: 61  KREVERLQPLFGGKLTAEDARKMGMLDRTIDSLIARTLIDEAARSLGLAATDETILRRVA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P F G   +F  D+F SRL+R G  E  ++      + R  +V     G+     L D
Sbjct: 121 SNPAFKGPTGQFDRDLFRSRLSRLGHTEDSFMKTERTNMVRNQMVETVAAGIGAPQALTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E R  +  ++ +   P  A P  AVL  +++     + APE++ ++ +L    
Sbjct: 181 PLLAWREERRVAETFLIKDESTPLPAAPDAAVLEAYYKDNVSRFMAPEFRALTVLLLRPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +    I+I  + ++  Y +  E++ +PE R V Q+VF     A +A   +  GK    +A
Sbjct: 241 DVAGGIDIDEEMVRDAYRQRIEEFSTPERRAVSQIVFDESSAAAKATDLVTGGKDLATIA 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +     +  I LG   K  +P+  LA+++F L+      PV   + G+ +  VS I+P  
Sbjct: 301 KALNSEI--IDLGVIEKNDLPE-GLAEAVFKLSSGATSQPV-KTALGWHVVKVSQIQPGR 356

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T SF EVK  +   MR  KA++ + E   R+E+ L  G +++E ++R  + ++ +  VD 
Sbjct: 357 TRSFDEVKAQLEQDMRKEKATDGLSELANRVEDALGGGATLEEAAKRHNLKTVKIAAVDA 416

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKD----DPLSKDHTVALPDGSYMWVQIKESIPARD 476
            G+   GK VA +P  +Q L   F  D     PL++     +P+  Y  + +        
Sbjct: 417 QGRGADGKPVADLPKSDQFLDVAFHTDQNTESPLTE-----VPNNGYFLLHVDGVTAPAP 471

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           + L E+ ++V   W+  +  E+   KA +L  +  K G+    +  + GA L T+    R
Sbjct: 472 KPLAEIRSEVVATWQAERRQEQARDKALKLA-DRIKVGEGIAQVALSAGAKLETSKPFVR 530

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENG-----LSYVVFKVTNSKVGPVQEKDKFI 591
              E        I+++F      +   P++ G     L+ VV   TN+     Q   + +
Sbjct: 531 EPAEGTALPATIIAELFKAQPGGIATAPVQGGTLVARLAKVVTFDTNANPALTQAARQRV 590

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           S   Q +  D+ D  IA L +   V V    + R
Sbjct: 591 S---QAVATDIADQYIAALNASIGVKVDRPQLTR 621


>gi|170749508|ref|YP_001755768.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656030|gb|ACB25085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 633

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 165/644 (25%), Positives = 300/644 (46%), Gaps = 26/644 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+ IR AS+ W+ KI L ++F   LI G+     +  F    S+ V +VG   +     
Sbjct: 1   MLQGIRNASQHWLGKIVLTIIFT-LLIAGVGIFGVEEFFRGGASNKVATVGSTPITAEQV 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ +L     ++   +  ++AR +GLD++++  L++ A LDQ   D+GL      V 
Sbjct: 60  RQAYQNQLQRYQTQLKRPLTPDQARMLGLDRQVMSQLITEAALDQKTHDLGLAVPDASVI 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I     F  +  +F   +F   L R G+NE  ++     +++R  +       +    
Sbjct: 120 KAIHEEKSFQNQQGQFEPQLFYQTLQRAGLNEGLFVREQRSVIARLQLAEAVSSDLHVPL 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            + +   R+  E R+  Y++L       I DP++  L  W+E  K  +RAPE++ ++ ++
Sbjct: 180 AMREAVHRYTTERRAAAYLMLTPSVAGQIPDPTDDELKTWYEANKSGFRAPEFRSVNLLV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295
            +     K   I+  + +A Y  NK++Y +PE RT++Q+VFP+   A+ A +++  G K 
Sbjct: 240 VEPEAMAKPDAITEADARAAYALNKDRYGTPEKRTIQQIVFPDAAAAEAARKAITDGSKT 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  +A E+G    D++LG+ +K  + D ++AD+ F+L + G   PV  G FG V+  V+ 
Sbjct: 300 FDAVAAERGTDEKDLTLGTLTKSELFDKAVADAAFALPEGGVSQPV-QGRFGTVLLRVTK 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+      F+ V+ +I   + + +A + ++     +E+  A    + +I+    +  + +
Sbjct: 359 IEAGTVKPFEAVEGEIRKALALARARDAMETTRDAIEDQRAGAKPLADIAAERGLKIVTV 418

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVF-----GKDDPLSKDHTVALPDGSYMWVQIKE 470
             VD  GK   G+ V  IP  E  L  +F     G ++PL          G Y+W  +  
Sbjct: 419 KAVDANGKGPDGQRVTDIPDAETTLPALFRAEIGGDNEPLRTKT------GGYVWYDVTG 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
              A D+ L++V   VK  W   + A+ + +K  +LV + +K G+      + +G +L  
Sbjct: 473 IDAAHDKPLDQVKDGVKAGWTATEIAKRLQAKGRELVEKINK-GETMEAAAQEVGVNLQE 531

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
              + R +        D ++ +F+ PV   K      G S  VFKVT + V         
Sbjct: 532 AQDLAR-NQAKDMLTADVVNLIFATPVG--KAGTAAAGDSRAVFKVTAATVPAFVADSPS 588

Query: 591 ISYLTQMMNKDLLDSV----IAYLKSQYSVTVHDNLIQRYLDGE 630
              +TQ     L D V    I+ ++    V V    ++R + GE
Sbjct: 589 DKQITQSFQASLADDVLSQYISEVQKNAGVKVDPAALRRAIGGE 632


>gi|46201422|ref|ZP_00055089.2| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 623

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 159/635 (25%), Positives = 291/635 (45%), Gaps = 24/635 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML++ R AS+TW+ ++   +L + F+ WG  D +    G S  + +G   +  +  +  +
Sbjct: 1   MLDVFRTASKTWIVRLLFALLALSFVAWGAGDVVRGGVGRSPAIEIGHTSMSATEVMGEF 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           K+E+  +    G  +  E AR +G+  + +D+L++   +D+    +GL A    +   +A
Sbjct: 61  KREVERLQPLFGGKLTPEDARKMGMLDRTIDSLIARTLIDEAARSLGLAATDETILRRVA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P F G   +F  D+F SRLAR G  E  ++      + R  +V     G+     L +
Sbjct: 121 SNPAFKGPTGQFERDIFRSRLARVGHTEDSFMKAERTNMVRNQMVETVAAGISAPQALTN 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E R  +  V+ +   P  A P  A L  +++     + APEY+ ++ +L    
Sbjct: 181 PLLAWREERRVAETFVIRDESTPLPAAPDAASLDAYYKDNLSRFMAPEYRALTVLLLRPA 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +    I+I  + ++  Y++  E++ +PE RTV Q+VF     A +A   +  GK    +A
Sbjct: 241 DVANAIDIDEEMVRETYQQRIEEFSTPERRTVSQIVFDESSAAAKATDMVTGGKDLAAVA 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +     +  I LG   K  +P+  LA+++F L       PV   + G+ +  V+ ++P  
Sbjct: 301 KALNTDI--IELGIVEKNDLPE-GLAEAVFKLRAGATGQPV-KTALGWHVVKVTQVQPGR 356

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T SF EVK  +   MR  KA++ + E   R+E+ L  G +++E ++R  + ++ +  VD 
Sbjct: 357 TRSFDEVKVQLEQDMRKEKATDGLSELANRVEDALGGGATLEEAAKRHNLKTMKIAAVDA 416

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKD----DPLSKDHTVALPDGSYMWVQIKESIPARD 476
            G+   GK VA +P  +Q L   F  D     PL++     +P+  Y  +++        
Sbjct: 417 QGRGANGKPVADLPKSDQFLDVAFHTDQNTESPLTE-----VPNNGYFLLRVDGVTAPAP 471

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L ++  DV   W+  +  E+   KA +L  +  K G++   + ++ GA L T+    R
Sbjct: 472 RPLADIKADVVATWQAERRQEQARDKALKLA-DRIKAGESASQVAQSAGAKLETSKPFIR 530

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGL------SYVVFKVTNSKVGPVQEKDKF 590
              E        I+++F      V   P++ G       S + F + N+     Q   + 
Sbjct: 531 EPGEGSSLPPTIIAELFKAQPGGVATAPVQGGTVVARLNSVIAFDI-NANPALTQAARQR 589

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +S   Q +  D+ D  IA L +   V V    + R
Sbjct: 590 VS---QAVATDIADQYIAALNASIGVKVDRPQLTR 621


>gi|182678431|ref|YP_001832577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634314|gb|ACB95088.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 640

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 156/635 (24%), Positives = 306/635 (48%), Gaps = 22/635 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           MLE +R A+R W+ +  + +    + + F+IWG+ D +F   G++T+  VG  ++   ++
Sbjct: 1   MLEAMRVATRGWIGRSLMTLVMGLIILSFIIWGVGD-MFRNLGANTLAKVGDTEITTQAY 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             ++   L  + ++    +  E AR +GLD++IL  L+  ATL+Q  + +GL      + 
Sbjct: 60  REAYSTILQRLQRQARRAITHEEARMLGLDRQILARLIGEATLNQEADKLGLALADSEIA 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             IA+  LF G +  F    F + L   G+ EK ++    ++L R  +    V G+    
Sbjct: 120 RIIAKDELFKGANGAFDRQRFEALLRDNGMTEKTFVREQHELLLRHMITDAVVTGLSVPK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
           ++L+    F  E R VD  +L    V  IA P+   L+++F      Y   E +++  + 
Sbjct: 180 IMLEMIHAFQTEARDVDTFLLPASSVGEIAAPTEDELSKYFADRAQAYATQERRKLLILS 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            D         I+ +++Q  Y+  K + FS PE R +EQ+ FP+   A +A Q L +G+ 
Sbjct: 240 LDPTTLAATQTIAPEDVQKLYDSVKAERFSVPEKRQIEQISFPDLATAGKARQRLDQGEN 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  L  +Q  S  D  LG+ ++  + D  +A++ F+L  +G  +  I  +FG  +  +  
Sbjct: 300 FEALLADQHISAKDADLGTLARSDLIDQKIAEAAFAL-PEGAVSQPIQDAFGAKLLRIVK 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I P+    F  V+  +  ++   KA +++   + ++E+  A G ++ E+++   + +  +
Sbjct: 359 IIPASVQPFASVEAGLKQELATAKARQEITGLHDKIEDLRASGKNLSEVAQSLGLKTQLI 418

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
             VD  G++ +G  +A +P    LL   F  D  +  D T+  P G ++W +++    AR
Sbjct: 419 ESVDAHGQNAQGAPIADLPNGPALLKAAFASDVGVDND-TLTTPQGGFVWFEVQGVDKAR 477

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG-ASLLTTNQI 534
            R LEE  ++V+  W+  +T  +++  A +L+ E    GK+  D+ ++ G   +     +
Sbjct: 478 RRTLEEARSEVEAAWRQDETNRKLALAAAELI-EQIDGGKSIADVARDHGNLEVRHVEGV 536

Query: 535 NRMD------NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
            R D         K    + ++Q+F+  V  V      +G   ++F+V ++KV P     
Sbjct: 537 TRADVQPTGNTPGKGLPPNVVTQIFNVGVHGVGSAADASG--RLIFQVQDAKVPPFDPAA 594

Query: 589 KFISYLTQ----MMNKDLLDSVIAYLKSQYSVTVH 619
             ++ + +     + +D+L   +A L+  +   V+
Sbjct: 595 PALTAIAKEADGGIKEDVLAQYVAKLQKDFGTKVN 629


>gi|300022969|ref|YP_003755580.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524790|gb|ADJ23259.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 628

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 136/513 (26%), Positives = 263/513 (51%), Gaps = 15/513 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ ++T VAK+   +L V F IWG++D +F   G   V  VG  ++    F  S+
Sbjct: 1   MLDAMRRGAQTPVAKLLFGLLCVSFAIWGVAD-VFQGWGRGFVAKVGHTEISAEEFRRSY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + EL  IS++    +++E+  + GLD+++L  +++GA ++   + +GL      +   I 
Sbjct: 60  QNELDRISRQSNQRLSAEQGHAFGLDRQVLAQMIAGAAIEAHADQLGLAISDKTLAEGIQ 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   D KF+   F   L + G++E+ +++   K   R  +V   + G      LLD
Sbjct: 120 ADPNFQ-TDGKFNRQGFEGLLQQIGMSEQGFLNLRRKDELRGAIVSALIKGQTVPKPLLD 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +   +  E R ++++ ++   V  +A+P  A L + +E  K  Y  PEY+++  ++    
Sbjct: 179 EIHAYNQEKRVLEWVKIDPAAV-TVAEPDEATLKKRYEDDKAKYMTPEYRKVQVLMLTPD 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQL 299
           + +K I I++DE+   YE +K+ + +PE R V+Q+ F ++  A+ A ++L+ G K    +
Sbjct: 238 DLKKSITITDDEIAKAYEADKDSFNTPEQRRVQQIAFKDRATAETALKALRDGTKSLADV 297

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           A+E G   +D+ LG  +K+ + D  +AD  FSL +K  ++ VI G F  V+  V+ I+P 
Sbjct: 298 AKETGAKDTDVDLGLITKKSLIDPKVADVAFSL-EKDKYSDVIDGRFATVVVRVTQIEPG 356

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            T +  +VK+ + +++   K    ++     +E+    G ++ E++ + ++   ++P  D
Sbjct: 357 TTKTLADVKEQVRDKLANDKVHGNLQSKRDDVEDARLAGKTLKEVADQLQLTYKEIPATD 416

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
             G    GK V       ++  R F  D     D  + L +  Y WV +  +   + +  
Sbjct: 417 VTGLGPDGKPVLETADIRKITARAFAPD--TGDDSAIDLTNDGYAWVNVLSTDAPKQKAY 474

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
           +EV   VK+D+        +SS+ ++L+ E +K
Sbjct: 475 DEVKDAVKQDY--------MSSEHHRLLDELAK 499


>gi|288958078|ref|YP_003448419.1| peptidyl-prolyl cis-trans isomerase D [Azospirillum sp. B510]
 gi|288910386|dbj|BAI71875.1| peptidyl-prolyl cis-trans isomerase D [Azospirillum sp. B510]
          Length = 626

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 158/637 (24%), Positives = 303/637 (47%), Gaps = 26/637 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  + +WV KI  V+L + F IWG+ D +F  S  +TV  VG+ ++   +    +
Sbjct: 1   MLQFIRNFAGSWVVKILFVLLILSFGIWGIGD-VFRSSTPTTVAEVGKVEIGQQALDQEF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +   +G  + +++A+  GL ++ L +L+     D    D+G+      V   IA
Sbjct: 60  RRQMERLRPMLGGNLTTDQAKRFGLLEQSLQSLIQRTLFDLAATDMGIAVGPEVVRLRIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  +  KF  ++F S L    + E  Y+    +  +R  V G    G+ P   L+ 
Sbjct: 120 DEPAFRNQQGKFDPNIFRSVLRNNQLTEDGYVAMIQRETARQLVAGAVSAGLAPPQPLVQ 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              RF  E R  + + L N  +  +  P +A + Q +E ++  + APEY+ ++       
Sbjct: 180 DLYRFRGEKRVAEVVTLPNASIGDVGAPDDAAIKQAYEDHQVRFTAPEYRALTVARLSPD 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
              K I+I + +L+  YE+   ++ +PE RTV+ +V  ++ +A    ++  K K   + A
Sbjct: 240 ALAKDIKIDDAQLRKAYEERANEFGAPEKRTVQMVVVDDEAKAKRIAEA-AKAKGLAEAA 298

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +E G  +  +SL +  K  +P++   D+ F+L + G  +  I  + G+ +  V+ + P+ 
Sbjct: 299 KETG--VEPVSLDNIGKADLPEIG--DAAFAL-EPGKPSDAIKSALGWHVMAVTGVTPAS 353

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T SF++V+  +A +M+  +A + V     R+E+ LA G S++E+++ + +V   +  +D 
Sbjct: 354 TKSFEDVRDQLAAEMKKEQALDSVFSIANRVEDQLASGASLEEVAQAQGLVLTKVAAIDS 413

Query: 421 AGKDVKGKEVAA-IPYKEQLLFRVFGKDDPLSKDHTVALPD---GSYMWVQIKESIPARD 476
            GK   GK+ A  +P  + LL   F     L    T  L +   GS++ V++   IPA  
Sbjct: 414 TGKAPDGKDAAPDLPALKALLPNAF----QLKAGATSNLTEGEGGSFIAVRVDSVIPAAV 469

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN--FRDIGKNLGASLLTTNQI 534
           R L +V   V  DW+  +  +  + KA ++     K+G     +D+    GAS   T   
Sbjct: 470 RPLADVRDQVIADWQQEQRNDRAAKKAEEIATRL-KQGAEAAAQDVATQAGASFAMTAPF 528

Query: 535 NRMDNENKFFGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
            R     +    D ++++F+  P E++      +  + V+ ++        +  D  ++ 
Sbjct: 529 TRDAQTVQGLPGDMVAKLFTAKPNEVISG---NSADAQVIARLKEIIPADPKAADADLAA 585

Query: 594 ----LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
               + Q M  DL+      L+ +Y V +H   I ++
Sbjct: 586 VRASVEQGMEGDLMAEFTNALRDKYPVRIHRQRIDQF 622


>gi|193084249|gb|ACF09911.1| peptidyl-prolyl cis-trans isomerase ppiD [uncultured marine group
           III euryarchaeote KM3-28-E8]
          Length = 631

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 157/635 (24%), Positives = 304/635 (47%), Gaps = 13/635 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE +R   RTW  K  L +L + F IWG+ D        +TVV VG  ++    F ++ 
Sbjct: 1   MLEFLRNGVRTWYFKALLGLLVLSFAIWGVGDIFRPGLSGNTVVKVGNIEIGSQQFTSAL 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +S+ +G     E+AR + + +++++ LV+ A  +     +G+      +   I 
Sbjct: 61  QRQMQNLSRTLGSNFTLEQARGLQVPERVVEGLVTEALHESEANALGIAVGKKALVQRIR 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  ++ +F   V+   LA  G +E++++    + LSR  V+G     +  S +L +
Sbjct: 121 SEPGFRNQEGQFDRSVYEQTLAINGFSEEQFVSRLRQELSRAQVLGSLTSEVPVSEVLTN 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +   +  E R   YI + +  +  I  P +A L ++++  +  + APEY+  +Y+     
Sbjct: 181 RLYSWNAEKRVAAYIKIQHDAIANIEKPDDAALQEYYKGNESLFTAPEYRSATYVHLTGK 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           + E  I++S+ ++Q  Y++N + +  PE RTV+Q++F  ++EA      L +GK F  +A
Sbjct: 241 DVESDIDVSDADIQKLYDQNIDAFKVPERRTVQQMIFSTEEEAKTGAAHLAEGKTFAAVA 300

Query: 301 EEQGKSLSDIS--LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           ++  +   D +  LG  +K ++PD +LA+++F+L+  G  TP + G FG+ +  V+ IK 
Sbjct: 301 KDLLRQDEDATNILGDVTKIHLPD-TLAEAVFNLS-DGQVTPPLEGPFGWYVMRVTAIKA 358

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             T    EV+ DI  Q+   ++ E + +    L++ L  G S++E +R+  +V+  +  V
Sbjct: 359 PKTQQLLEVRIDIRAQLVQERSGEALYKLSNDLDDALGGGASLEEAARQVGVVAKKVTKV 418

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
           D        K +  +P   + L  +F   D   +   V L    Y+ ++      A+ + 
Sbjct: 419 DRGSNGSDEKPMNDLPPGPEFLTTLFNTPDG-QESELVDLGVNGYLILRNTGIQAAKVKP 477

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM- 537
           LE V     K WK  +  ++    + + +LE  K G+    I K++   + T+   NR  
Sbjct: 478 LESVRNRAIKFWKAEQRRKQTEENSKR-ILERIKGGEPLEVISKSIDVPIETSPPFNRHG 536

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQEKDKFIS-YLT 595
           +           +++F   V      P + G +  V K +  +KVG      K ++  L 
Sbjct: 537 EGAANNLPRSLAAELFGVKVGGASSAPSDRGYTIGVLKEIVKAKVGANSADVKALAEQLA 596

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVH----DNLIQRY 626
           Q + +DL       L+  ++V +     DNL+ ++
Sbjct: 597 QRIGRDLEIQYNNALRQHHNVEIDQRALDNLLSQF 631


>gi|144898531|emb|CAM75395.1| peptidyl-prolyl cis-trans isomerse D [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 645

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 151/632 (23%), Positives = 296/632 (46%), Gaps = 17/632 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD-ALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R AS++WV K+   +L + FL WG+ D A   + G    ++VG +    +  +  
Sbjct: 22  MLDSFRNASKSWVIKVLFGLLVLSFLAWGVEDVARNGLFGRGPAITVGDRDFAAAEVMVE 81

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +K+++  +  + G  ++   AR +GL  + +D++V+   +D+    + L      V  ++
Sbjct: 82  FKRDMDQLQPQFGGKLSMADARKLGLMDRTIDSIVTRTLVDEAARGLSLATSDDEVIAKV 141

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
           A  P F  +  +F  D+    L+R G +E+E++      + RT +     GG+     L 
Sbjct: 142 AAEPSFRNQLGQFDRDLLRQALSRAGWSEQEFMRQEKDNILRTQLAESLSGGLTAPQALT 201

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           +   R+  E R  + + +    +P  A P  A L Q+++   +++ APE++ I+ +L   
Sbjct: 202 EPLIRWKRETRQAETVSIKASSMPQPAAPDAATLEQYYKANANSFMAPEFRAITALLLRT 261

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  + + ++++ L   Y+  ++++ SPE RTV Q+V  +   AD+A + +K GK    +
Sbjct: 262 TDAGRGLTVTDEMLTEAYKAREDEFHSPERRTVSQIVLADDASADKAAEMVKAGKDIKVI 321

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           A++ G ++  I LG   K  +PD  LA  +F +  +G  T  +  + G+ +A V+ I   
Sbjct: 322 AKDLGVNV--IELGLVEKGDLPD-ELAGPVFDVG-QGALTQPVKSALGWHVAKVTAITAE 377

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            T S  EV++ +A  +   K+ +++ E   ++E+ L  G +++E + R ++  + +  +D
Sbjct: 378 KTRSLAEVREMLAADILREKSMDRITELTNQVEDSLGGGATLEETATRFQLPLVRIAAMD 437

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARDRK 478
             G+   GK V  +P  E  L   F  +     +  +   DG+ +++   +SI P + + 
Sbjct: 438 AKGRAPNGKPVTDLPGGESFLDVAFHTEQ--GTESQLTEMDGNGLFLLRVDSITPPQPKV 495

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQL---VLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
           L EV T+    W+    AE+  + A  L   + E  K G+    + ++L     T+    
Sbjct: 496 LSEVRTEAVAAWQ----AEQRQAAAKALADKIAERVKAGEPLAKVAQSLSLKAETSAPFT 551

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF-KVTNSKVGPVQEKDKFISYL 594
           R   E        ++ +F G    V+  P  +G       KV         +  + I   
Sbjct: 552 REGGEASKMPPAIVTALFDGKPGRVEAAPSRDGWMVAQLDKVMAFDAKADAKAAEQIRKR 611

Query: 595 TQ-MMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           T   ++ DL+D  IA L  +  V V  + + R
Sbjct: 612 TNSAVSVDLIDQYIAALNVEMGVKVDRSQLSR 643


>gi|209963457|ref|YP_002296372.1| peptidyl-prolyl cis-trans isomerse, putative [Rhodospirillum
           centenum SW]
 gi|209956923|gb|ACI97559.1| peptidyl-prolyl cis-trans isomerse, putative [Rhodospirillum
           centenum SW]
          Length = 622

 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 148/646 (22%), Positives = 275/646 (42%), Gaps = 54/646 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  + +W+AKI  ++L   F +WG+ D  F+      V  VG  ++        +
Sbjct: 1   MLQAIRSTAGSWIAKILFILLIASFAVWGIGD--FTRGLGRHVAEVGDVQITPQELDQEF 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E+  + + +G  + +E+AR+ GL ++ L  +V    +    +D GL      V  EI 
Sbjct: 59  RDEVTRLRRVMGADLTAEQARAFGLLERTLQQMVQRTLVSLAGQDKGLMPSDAMVADEIR 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLL 179
           R P+FH +  +F  D+  + L + G+ E+  ++     ++R  ++G + +G + P+ L  
Sbjct: 119 RVPVFHNQLGQFDPDLMRALLRQNGMTEQGLVEQVRADMARGQLLGSVSIGAILPTTLA- 177

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           +   RF  E R  D I +    +P  A P  +VL Q+ +     Y APEY+ ++      
Sbjct: 178 ETLFRFRNEKRVADLITVPATAMPEPAAPDASVLAQYHQDRAVRYTAPEYRSLTVAKLTA 237

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                 I +S+ +++  Y     ++ +PE R V Q V P++  A     ++  G    Q 
Sbjct: 238 EAIAGDITVSDADIEQAYSARASEFVAPERRAVVQAVLPDEAAAKSVADAVAGGASLEQA 297

Query: 300 AEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           A+    +   I LG  ++ + +P+  L + +F L++ G  +  +  + G+ +  V  I P
Sbjct: 298 AKA--AAAEAIDLGEVTRDQLLPE--LVEPVFGLSQ-GAISAPVESTLGWHVLTVRGITP 352

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
                  EV+  +   +R  +A +++ E   ++++ LA G +++E ++R     + +  V
Sbjct: 353 GHERPLAEVRDQVVADLRKERALDRLYEVANQMDDDLAGGATLEEAAQRAGAEIVRIEAV 412

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-----------SYMWVQ 467
           D  G    G  V  +P   Q+L   F            ALP G            Y  V+
Sbjct: 413 DSRGTTPAGTPVQDVPALPQVLETAF------------ALPSGETGHMTETDAQGYFAVR 460

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           +    PA  + LE +   V  DW   + A    +KA++L  +  +     R      GA+
Sbjct: 461 VDGVQPAALKPLETIRERVLADWTAEQRAAAARTKADELAAKLREGADPARLAATVPGAT 520

Query: 528 LLTTNQINRMDN---------ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
              +    R            E  F    G   V  G     +  P+   L  ++  V +
Sbjct: 521 HARSEPFTRRPEAAALPASLVEELFGAQPGGVAVADG-----REGPVAARLVEIIPAVPD 575

Query: 579 SKVGPVQEKDKFISYLTQ-MMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           +         K I   T+  +  DL+   +  L+ Q+ V+V+  LI
Sbjct: 576 AA------GVKVIRDTTEATLADDLVTQYVGGLQRQFPVSVNRGLI 615


>gi|114327489|ref|YP_744646.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315663|gb|ABI61723.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 656

 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 155/656 (23%), Positives = 287/656 (43%), Gaps = 44/656 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML   R +   W  ++   +L + F+ WG SD     +G   +V+V   ++   +F  ++
Sbjct: 14  MLATFRNSLNAWPVRLLFGLLVLAFVGWGFSDVWTQATGGGALVTVNGSRIEPQAFQATY 73

Query: 61  KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           ++EL  + Q++G     V  +  + V   ++ L  +V+   LD     +GL      +  
Sbjct: 74  QRELNRVRQQMGGGRQDVPPDIRKMVA--QQALQQMVTETVLDDLTRKMGLTTPDADIRQ 131

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
                P F     +F    F + L   G+ E  Y+ +  + ++   ++     G     +
Sbjct: 132 ATYAMPAFKNDQGQFDQARFQAVLNSVGLTEDSYVAYLRRTITERQLLDAIRAGASAPKI 191

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L+     +  E RS D I +     PA   P++  L +++  +   Y APEY+RI  I+ 
Sbjct: 192 LVAPLFAWQKEQRSGDMIEVPVSAAPAPPQPTDKQLERYWANHPARYTAPEYRRIKAIVL 251

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---K 294
                 K IE+   +L+A Y+ N   + +PE R V  ++ P++ +A    +    G   K
Sbjct: 252 TPETVAKAIEVPEKDLRAWYDANGIHFDTPEKRDVSIVLVPDEAKAKALAEQWDNGADWK 311

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           K   LA   G S   + L   +K+ +P   L    F   K       +H S G+ +  V 
Sbjct: 312 KISALANSDGGSA--VELTGITKQQLPVPDLMPLAFETTKTDQIAGPVHDSLGWHVVRVG 369

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE-ISRREKIVSI 413
            I+P+   SF+E+K++I   +   +A E++ +    L+E  A G+++D+ +   + + +I
Sbjct: 370 KIQPATHRSFEEMKEEIKQILSTQRAMEQIYDRSSHLDEAFAQGSTLDDKLPDADAVAAI 429

Query: 414 DLPLVDFAGKDVKGKEVAAIP----YKEQLLFRVFG--KDD-----PLSKDHTVALPDG- 461
              L D  G   +G   A IP     K+ L+   F   K D     P++       P G 
Sbjct: 430 SGQL-DMQGNTREGTP-APIPGSDQLKQALITAAFSMKKGDAPHLVPVTPQSQPGTPAGP 487

Query: 462 -SYMWVQIKESIPARDRKLEEVLTDVKKDW---KTVKTAEEVSSKANQLVLEYSKEGKNF 517
            +Y  VQ+++ IP   R   EV  +V  DW   K   + EE +++A  L L+   EGK+ 
Sbjct: 488 TTYFAVQVEDIIPGALRPFPEVKAEVTADWIQDKRHHSQEEAATRA-MLALQ---EGKSV 543

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
            D     G +L     + R   E      D    +F+  +++     +     + + ++T
Sbjct: 544 ADAVTLSGGTLKQIPLLTR-KGETGDVSADTRRALFA--LKLNDSTMVNTPDGFAIIRLT 600

Query: 578 NSKVGPVQEKDKFISY------LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
             ++    EKD   ++      +TQ + +DL ++ +A L+S+    V++ L+QR +
Sbjct: 601 --RILSPTEKDDPAAFSQAREQITQGLAEDLENTFLASLRSKADARVNNALLQRIM 654


>gi|126461486|ref|YP_001042600.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103150|gb|ABN75828.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 621

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 244/514 (47%), Gaps = 36/514 (7%)

Query: 25  FLIWGLSDAL------FSVS----GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
            + WGL   +      F V+    G STV SVG + +   ++  + +QE+  +  +I   
Sbjct: 19  LVFWGLVGLMAVGLGGFGVTNFGGGLSTVGSVGDRDITTGAYARALQQEMRALGAQINQP 78

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           V  E A++ GLD+++   LV+ A L    + IGL     RV  EI  +  FHG   +F  
Sbjct: 79  VTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQFDR 138

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           + +   L +  ++E E+     + ++R+ + G   GG      +++    +  E RS   
Sbjct: 139 ETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVNTLHAYIAERRSFGL 198

Query: 195 IVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
           + +   ++   +A P++A L  W+E +  ++ APE KRI+Y      +    +      L
Sbjct: 199 LRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPADEAAL 258

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
           +  Y++   ++  PE R VE+LVFP  + A EA + L  G  F  L  E+G  L+DI LG
Sbjct: 259 RRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADIDLG 318

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
             S++ +     AD++F+L + G   PV     G  +  V+ +  +    F+EV+ D+  
Sbjct: 319 DASRDALGGA--ADAVFALTEPGIAGPV-ETDLGPALFRVNGVIAAHETPFEEVRDDLLT 375

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSID-LPLVDFAGKDVKGKEV 430
           + +   A   +    +++++ LA G ++++++     KI ++D  P +D    D+ G E 
Sbjct: 376 EYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMKIATVDYAPGLD---SDIAGYEA 432

Query: 431 AAIPYKEQLLFRVFGKDDPLSKD---HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
                     FR     D L KD    T+ L DG  + +++ E +P + +  EEV  DV 
Sbjct: 433 ----------FRTAA--DKLQKDDFPETILLNDGGLLAMRLDEVVPPKLKPFEEVRDDVA 480

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
           +  +     + ++++A ++  + ++EG +    G
Sbjct: 481 EAARKDALTKALAARATEIA-KAAEEGTDLGSFG 513


>gi|312113155|ref|YP_004010751.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218284|gb|ADP69652.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 633

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 145/558 (25%), Positives = 258/558 (46%), Gaps = 22/558 (3%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
           +V +VG   +    F  ++++ L  +SQ+ G  ++   A++ GL  ++L  L+  A LD 
Sbjct: 37  SVATVGSASISPEDFRRAYQRVLENVSQQAGRRISPAEAQAFGLPNRVLQGLIQDAALDL 96

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
             +++G+      V   I    +F  K   FS D +   L   G     +   Y   L R
Sbjct: 97  EAKELGVGLSEEGVRRGITSLDVFQDK-GVFSADKYHRFLQNIGYTAPFFEQEYRGDLIR 155

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
             + G+F G       LL+   ++  E R++ Y  L      A+  P+ A L  ++E  K
Sbjct: 156 RQLRGVFDGSGVVPKALLEAYNKYGNEQRTLAYFTLTPEAAGAVPAPTEAELQAFYEDRK 215

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
             +  PE +++S +        K + I +++L+AEY      Y  PE R +E + F  + 
Sbjct: 216 PQFMTPELRKVSALAISPQTVAKSLTIPDEDLKAEYAAKASVYSVPERRKLEIVPFKTRA 275

Query: 282 EADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLA---KKG 336
           +AD A+  LK G +  + +A++ G S  +I  G  S++ + D   + D+I   A   +KG
Sbjct: 276 DADAAYAKLKSGARDLLGVAKDAGFSQPEIDAGVVSRKELADKFGINDAIVKEAFSTEKG 335

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
             +  + G    VI  V  + P    SF EVK  I   +  T+A  + +   K  EE  +
Sbjct: 336 WTSRPVDGPVSTVIMRVLEVVPGQERSFAEVKDQIRADLAKTRAQSEFQRLIKAFEEDRS 395

Query: 397 LGTSMDEISRREKIVSIDLPL----VDFAGKDVKGKE--VAAIPYKEQLLFRVFGKDDPL 450
            G  + + +++     ++LPL    +D + KD  GK   V+ +P   QL    F K D  
Sbjct: 396 TGIPLADSAKK-----LNLPLEEVTIDRSAKDADGKPVTVSVVPAA-QLADAAF-KSDVG 448

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
            ++  + L  G Y W ++ + +  R + LEEV  +V+  W+  +  + ++S+A  LV   
Sbjct: 449 VENEAIRLQGGGYAWFEVADVVKPRQKPLEEVKGEVEAAWRADQVRDRLASRARDLVARL 508

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS 570
            K G+    + K++GA++ T+  + R   E+       I+Q F+ P         ENG S
Sbjct: 509 DK-GETIDAVAKSVGATVKTSQPLKRNGKEDG-VPPAAIAQAFTLPEGGAGSAGSENGTS 566

Query: 571 YVVFKVTN-SKVGPVQEK 587
             VF++   ++ GP+ E+
Sbjct: 567 RAVFQLAKITQPGPLAEE 584


>gi|221638406|ref|YP_002524668.1| YbaU [Rhodobacter sphaeroides KD131]
 gi|221159187|gb|ACM00167.1| YbaU [Rhodobacter sphaeroides KD131]
          Length = 621

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/514 (25%), Positives = 243/514 (47%), Gaps = 36/514 (7%)

Query: 25  FLIWGLSDAL------FSVS----GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
            + WGL   +      F V+    G STV SVG + +   ++  + +QE+  +  +I   
Sbjct: 19  LVFWGLVGLMAVGLGGFGVTNFGGGLSTVGSVGDRDITTGAYARALQQEMRALGAQINQP 78

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           V  E A++ GLD+++   LV+ A L    + IGL     RV  EI  +  FHG   +F  
Sbjct: 79  VTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQFDR 138

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           + +   L +  ++E E+     + ++R+ + G   GG      ++D    +  E RS   
Sbjct: 139 ETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVDALHAYIAERRSFGL 198

Query: 195 IVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
           + +   ++   +A P++A L  W+E +  ++ APE KRI+Y      +    +      L
Sbjct: 199 LRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPTDEAAL 258

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
           +  Y++   ++  PE R VE+LVFP  + A EA + L  G  F  L  E+G  L+DI LG
Sbjct: 259 RRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADIDLG 318

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
             S++ +     AD++F+L + G   PV     G  +  V+ +  +   SF+EV+ D+  
Sbjct: 319 DASRDALGGA--ADAVFALTEPGIAGPV-ETDLGPALFRVNGVIAAHETSFEEVRDDLLT 375

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSID-LPLVDFAGKDVKGKEV 430
           + +   A   +    +++++ LA G ++++++     KI ++D  P +D    D+ G E 
Sbjct: 376 EYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMKIATVDYAPGLD---SDISGYEA 432

Query: 431 AAIPYKEQLLFRVFGKDDPLSKD---HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
                     FR     D L KD    T+ L DG  + +++ E +  + +  EEV  DV 
Sbjct: 433 ----------FRTAA--DKLQKDDFPETILLNDGGLLAMRLDEVVAPKLKPFEEVRDDVA 480

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
           +        + ++++A ++  + ++EG +    G
Sbjct: 481 EAAHKDALTKALAARATEIA-KAAEEGTDLGSFG 513


>gi|163793237|ref|ZP_02187213.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium
           BAL199]
 gi|159181883|gb|EDP66395.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium
           BAL199]
          Length = 626

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 134/535 (25%), Positives = 247/535 (46%), Gaps = 29/535 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR    +   KI  V+L V F IWG+ D  F        +SVG  +  F++     
Sbjct: 1   MLQFIRSKVTSIFVKILFVMLIVSFAIWGIGDVFFGNPAGKVAISVG-DETRFTT--QEV 57

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E     ++IG  +  E+A  +G+  ++++N+V+   +      + L     RV  E  
Sbjct: 58  AGEFETARRRIGVPLTVEQAIQLGMLDQVMNNMVTEGLMIAATRSLDLSVGTDRV-AEFV 116

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           RS  F  +  +F    + + LA  G +E+E+I    +  +R  ++             +D
Sbjct: 117 RS-RFTDQTGQFDRARYQTTLANNGWSEEEFILRLRQDFARRQLIDALTAADAAPEAAVD 175

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +   +  E R  + + +    VP    P +A L  +FE  K  Y  PEY+ I++      
Sbjct: 176 RVFAYRQERRIAEVVTIPAAAVPEPTAPDDAALNSYFEASKSGYEEPEYRSIAWAQVSPA 235

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
              K ++I   +++A Y++  ++   PE R V+Q++F  +  +  A   +  G+ F+ +A
Sbjct: 236 AVAKTLDIPEGDVRAAYDERADQLAKPERREVQQILFETEDASKAAHARIAGGEDFVAVA 295

Query: 301 EE-QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           ++  G   + + LG+ +++ +P    AD++F+LA+     PV  G FG+ +  V +I+P 
Sbjct: 296 KDTTGADEAALDLGALARDGLP-TGTADAVFALAQNAVSEPVKSG-FGWHLFRVRSIQPG 353

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            TV+++E K  I +++   +A + V E   +LE+ LA G +++E ++     S++LP++ 
Sbjct: 354 TTVTYEEAKGRIRDELAHDRALDVVYETANKLEDALAGGATLEEAAK-----SLELPVLR 408

Query: 420 FAGKDVKGKEVAAIPYKEQLL------FRVFGKDDPLSKDHTVALP---DGSYMWVQIKE 470
             G    G    A+   E+ +      F     D P  KD    L    DG +  +++ E
Sbjct: 409 ITGLSKTG----ALKSGEKAVDLPGGRFLELAFDTP--KDQQSGLGEGLDGQFFVLRVDE 462

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
               R   L+EV   V  DWK+ +  E    +A+ L  E  + G +  D+    G
Sbjct: 463 ITAPRVPSLDEVRDRVLADWKSERRMEIAEERADSLA-EKVRGGGSLADLAAADG 516


>gi|77462552|ref|YP_352056.1| peptidyl-prolyl cis-trans isomerse [Rhodobacter sphaeroides 2.4.1]
 gi|4185543|gb|AAD09115.1| YbaU [Rhodobacter sphaeroides]
 gi|77386970|gb|ABA78155.1| possible peptidyl-prolyl cis-trans isomerse [Rhodobacter
           sphaeroides 2.4.1]
          Length = 621

 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 242/514 (47%), Gaps = 36/514 (7%)

Query: 25  FLIWGLSDAL------FSVS----GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
            + WGL   +      F V+    G STV SVG + +   ++  + +QE+  +  +I   
Sbjct: 19  LVFWGLVGLMAVGLGGFGVTNFGGGLSTVGSVGDRDITTGAYARALQQEMRALGAQINQP 78

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           V  E A++ GLD+++   LV+ A L    + IGL     RV  EI  +  FHG   +F  
Sbjct: 79  VTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQFDR 138

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           + +   L +  ++E E+     + ++R+ + G   GG      +++    +  E RS   
Sbjct: 139 ETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVNTLHAYIAERRSFGL 198

Query: 195 IVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
           + +   ++   +A P++A L  W+E +  ++ APE KRI+Y      +    +      L
Sbjct: 199 LRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPADEAAL 258

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
           +  Y++   ++  PE R VE+LVFP  + A EA + L  G  F  L  E+G  L+DI LG
Sbjct: 259 RRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADIDLG 318

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
             S++ +     AD++F+L + G   PV     G  +  V+ +  +    F+EV+ D+  
Sbjct: 319 DASRDALGGA--ADAVFALTEPGIAGPV-ETDLGPALFRVNGVIAAHETPFEEVRDDLLT 375

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA---GKDVKGKEV 430
           + +   A   +    +++++ LA G ++++++       +++  VD+A     D+ G E 
Sbjct: 376 EYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGE---AGMEIATVDYAPGLDSDIAGYEA 432

Query: 431 AAIPYKEQLLFRVFGKDDPLSKD---HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
                     FR     D L KD    T+ L DG  + +++ E +  + +  EEV  DV 
Sbjct: 433 ----------FRTAA--DKLQKDDFPETILLNDGGLLAMRLDEVVAPKLKPFEEVRDDVA 480

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
           +  +     + ++++A ++  + ++EG +    G
Sbjct: 481 EAARKDALTKALAARATEIA-KAAEEGTDLGSFG 513


>gi|260433616|ref|ZP_05787587.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417444|gb|EEX10703.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 613

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 147/604 (24%), Positives = 275/604 (45%), Gaps = 36/604 (5%)

Query: 36  SVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           ++SG+  TV  VG + +   ++    ++E+  +  + G  +   +AR +GLD++ L  LV
Sbjct: 31  NLSGTVRTVAQVGDEVITVDAYARELQREIRAVEAQTGQPLQMSQARDLGLDQRALSRLV 90

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
           + A LD  +  +G+      +  EI R   F G D  F  + +  +L + G+ E E+ + 
Sbjct: 91  ALAALDNEVAQLGISVGDENLQKEILRIQAFQGADGSFDREAYRFQLEQIGMTEAEFEED 150

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVL 213
             K  +RT V G  + G+    +L D    +    RS     L+   + A + +P++A +
Sbjct: 151 LRKETARTIVQGAIMNGIEMPAVLTDTLADYVQARRSFTVATLSADALDAPVPEPTDADI 210

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
             ++E   D +  P  K+I+Y +      +  +E+  D L+  Y++ KE+Y  PE R VE
Sbjct: 211 QAFYEANTDRFTLPRTKKITYAVLSPAMLQDTVEVDEDALRRLYDQRKEQYQQPERRLVE 270

Query: 274 QLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
           +LV+P++ EA EA   L+  G  F QL   +   LSD+ LG  +++ + +   AD++F+ 
Sbjct: 271 RLVYPSEAEATEAKAQLEVGGVDFEQLVRARELELSDVDLGDVTRDDLGEA--ADAVFA- 327

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           A+ GD    +  +FG  +  V+       V+F E + ++  ++   +A   ++   +   
Sbjct: 328 AEVGDVVGPLPSAFGPALFRVNGTLAEHNVTFDEAEPELREELAAERARRVIESQAEEYN 387

Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
           + LA G +++E++       ++L  +D+  +    +++AA          V   D P   
Sbjct: 388 DMLAGGATLEELAAE---TEMELGQIDWTAQ--TDEDIAAYDAFRSAAQAVGEGDFP--- 439

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
                L DGS   +++ E +P R   LE     V + WK  +  + +  KAN +V   + 
Sbjct: 440 -EIGFLEDGSVFALRLDEELPPRPEPLESARDRVIEAWKQEEIGKALLEKANTVVTSLAV 498

Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572
           EG +F       G      N + R    +   G D ++QVF      ++  P +      
Sbjct: 499 EG-DF----AATGLPFRVENALTRTAFLDDVPG-DFMTQVFEMEPGELRVIPGQGA---- 548

Query: 573 VFKVTNSKVGPVQE-------KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            F V   +V P  E       KD   + L Q + +++ D+ +   +++   T    L QR
Sbjct: 549 AFIVRLDEVLPPAETDEQRQMKDAVAAQLNQALAQNIFDAYVRDAQTRARPT----LDQR 604

Query: 626 YLDG 629
            L+ 
Sbjct: 605 ALNA 608


>gi|332557437|ref|ZP_08411759.1| putative peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides WS8N]
 gi|332275149|gb|EGJ20464.1| putative peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides WS8N]
          Length = 621

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 129/514 (25%), Positives = 243/514 (47%), Gaps = 36/514 (7%)

Query: 25  FLIWGLSDAL------FSVS----GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
            + WGL   +      F V+    G STV SVG + +   ++  + +QE+  +  +I   
Sbjct: 19  LVFWGLVGLMAVGLGGFGVTNFGGGLSTVGSVGDRDITTGAYARALQQEMRALGAQINQP 78

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           V  E A++ GLD+++   LV+ A L    + IGL     RV  EI  +  FHG   +F  
Sbjct: 79  VTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQFDR 138

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           + +   L +  ++E E+     + ++R+ + G   GG      +++    +  E RS   
Sbjct: 139 ETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVNTLHAYIAERRSFGL 198

Query: 195 IVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
           + +   ++   +A P++A L  W+E +  ++ APE KRI+Y      +    +      L
Sbjct: 199 LRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPADEAAL 258

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
           +  Y++   ++  PE R VE+LVFP  + A EA + L  G  F  L  E+G  L+DI LG
Sbjct: 259 RRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADIDLG 318

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
             S++ +     AD++F+L + G   PV     G  +  V+ +  +    F+EV+ D+  
Sbjct: 319 DASRDALGGA--ADAVFALTEPGIAGPV-ETDLGPALFRVNGVIAAHETPFEEVRDDLLT 375

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSID-LPLVDFAGKDVKGKEV 430
           + +   A   +    +++++ LA G ++++++     KI ++D  P +D    D+ G E 
Sbjct: 376 EYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMKIATVDYAPGLD---SDIAGYEA 432

Query: 431 AAIPYKEQLLFRVFGKDDPLSKD---HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
                     FR     D L KD    T+ L DG  + +++ E +  + +  +EV  DV 
Sbjct: 433 ----------FRTAA--DKLQKDDFPETILLNDGGLLAMRLDEVVAPQLKPFDEVRDDVA 480

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
           +  +     + ++++A ++  + ++EG +    G
Sbjct: 481 EAARKDALTKALAARATEIA-KAAEEGTDLGSFG 513


>gi|84500963|ref|ZP_00999198.1| hypothetical protein OB2597_02472 [Oceanicola batsensis HTCC2597]
 gi|84391030|gb|EAQ03448.1| hypothetical protein OB2597_02472 [Oceanicola batsensis HTCC2597]
          Length = 612

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 128/523 (24%), Positives = 244/523 (46%), Gaps = 17/523 (3%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V SVG Q++    +  + + EL  +  + G  ++ E+A+++G+D+++L  L++ A  D  
Sbjct: 36  VGSVGDQEITVQEYGRTLQSELRAMEAQTGEAISLEQAQAMGIDRRVLSRLLTNAAFDLE 95

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            + +GL      +   +   P F G D +FS D +   + R G+   E+ D   K  +R 
Sbjct: 96  ADRVGLSIGDETLVRLVRDIPAFRGVDGQFSRDGYEFAIERSGLTVGEFEDGIRKETARA 155

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYK 221
            + G    G    +  LD    ++ E R V +  + +  +   + +PS   L   +++  
Sbjct: 156 LLQGAVFSGRALPDAYLDTVLNYFAERRRVTWARVESSQLDGESFEPSEEDLRALYDELI 215

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           +++  PE KRI+Y          ++EI  D L+ EYE   ++Y  PE R VE+L++ +Q 
Sbjct: 216 EDFTLPERKRITYAWLTPEMILDQVEIDEDLLRQEYEARSDQYNRPERRLVERLIYADQG 275

Query: 282 EADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
            A EA   L+ G+  F  L EE+G +LSDI +G  S+  +   +  D +F+ A+ G+   
Sbjct: 276 RAAEAADRLENGEADFETLVEERGLTLSDIDMGDVSRADLG--AAGDPVFA-AESGEIVG 332

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
            +    G     V+ I  +   +F+E   D+  ++   +A  +V  + +  E+ LA G +
Sbjct: 333 PVETDLGPAFFRVNGILSAEETTFEEALPDLRQELAFDRARRRVANEAEPAEDMLAGGAT 392

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
           ++E++       + L  VD+A    +G  +AA    +    R+    D  +    + L D
Sbjct: 393 LEELAAE---TDMRLGSVDWAEGQSEG--IAAYEGFDAAAARL----DETAYPEVMRLTD 443

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
           G    +++ E +P      E V   V+  W+T +T + + ++A + + +  +E  +F  +
Sbjct: 444 GGIFAMRLDEVLPPEPAPFENVRERVRNIWETRQTMQRLRTQAGEHI-DRLRESADFDSL 502

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
           G  +      T Q + M     F   + + Q+  G + MV  F
Sbjct: 503 GLEVQTEEALTRQGSVMGAPEAFV--ETVFQMEEGQIAMVDGF 543


>gi|146279132|ref|YP_001169291.1| hypothetical protein Rsph17025_3102 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557373|gb|ABP71986.1| hypothetical protein Rsph17025_3102 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 655

 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 126/482 (26%), Positives = 226/482 (46%), Gaps = 37/482 (7%)

Query: 25  FLIWGLSDALFSVS-----------GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            + WGL  AL +V            G STV SVG + +  + +  + +QE+  +  +I  
Sbjct: 53  IVFWGLV-ALMAVGLGGFGVTNFGGGLSTVGSVGDRDITTADYARALQQEMRALGAQINQ 111

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            V  E AR+ GLD+++   LV+ A L    + +GL     RV  EI  S  FHG   +F 
Sbjct: 112 PVTMEMARAFGLDQQVRRRLVTQAALSNEADRVGLSVGDARVAEEITGSDSFHGPSGQFD 171

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            + +   L +  ++E E+ +   + +SR+ + G   GG      L+D    +  E RS  
Sbjct: 172 RETYRLVLRQNNLSESEFENGLREDISRSLLQGAVGGGFVAPAALVDTLHAYIAERRSFS 231

Query: 194 YIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
            + +   ++ A + +P+   L  W+E +  ++ APE KRI+Y      E    + +  + 
Sbjct: 232 LLRVQEANLGAPLPEPTEDELQAWYEAHPADFTAPERKRITYAALLPQEVAPTLPVDEEA 291

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+  Y++   ++  PE R VE+L F   + A EA   + +G  F  L  E+G  L DI +
Sbjct: 292 LRRLYDQRLGEFVQPERRLVERLAFSTPEAAAEARARIDEGTPFETLVSERGLELIDIDM 351

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           G  +++ +   + A+++F+L + G   PV  G  G  +  V+ +  +    F+ V+ D+ 
Sbjct: 352 GDVTRDEL--GAAAEAVFALTEPGIAGPVETG-LGPALFRVNGVIAAQETPFEAVRDDLL 408

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSID-LPLVDFAGKDVKGKE 429
            + +   A+  +     ++++ LA G +++E+      KI ++D  P +D    D+ G E
Sbjct: 409 AEYQQDAAARAISGRRDQIDDLLAAGATLEELGTEAGMKIATVDYAPGLD---SDIAGYE 465

Query: 430 VAAIPYKEQLLFRVFGKDDPLSKD---HTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
                      FR     D L  D    TV L DG  + +++ E +P + +  EEV  +V
Sbjct: 466 A----------FRTAA--DALQPDDFPETVQLNDGGLLAMRLDEVVPPQLKPFEEVRDEV 513

Query: 487 KK 488
            +
Sbjct: 514 AE 515


>gi|99080985|ref|YP_613139.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. TM1040]
 gi|99037265|gb|ABF63877.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. TM1040]
          Length = 611

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 134/516 (25%), Positives = 240/516 (46%), Gaps = 23/516 (4%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINSWKQE 63
           ++K S+T+V  I + +LFV    +G      +VSG++ T+ +VG   V    +  + +QE
Sbjct: 1   MKKLSKTFV-WILMGLLFVGLAGFGA----INVSGTTRTLATVGDATVSVDDYARALQQE 55

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
              I  + G  +   +  ++G+D+ +L  LV+ A LD  + +IGL      +  EI R  
Sbjct: 56  QRAIQAQSGQSIPLSQLIAMGVDRGVLSGLVATAALDNELTEIGLSVGDEVLLEEITRIS 115

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
            F G D  FS D +   L   G++E E+        +RT + G   GG R   +L +   
Sbjct: 116 AFQGSDGSFSRDNYRFALDNAGLSEAEFEADMRSETARTLLQGAITGGTRMPAVLGETLT 175

Query: 184 RFYFENRSVDYIVLNNRHVP--AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
            +    RS  Y+ L   +VP  AIA P+   L  ++E + +++  PE K I+Y+      
Sbjct: 176 NYIGARRSFSYVRLAEANVPLTAIA-PTEDALKAYYETHIEDFTLPETKVITYVALRPDA 234

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLA 300
              ++E+    L+  YE+   ++  PE R VEQLVFP++  A  A   L   G  F  L 
Sbjct: 235 LVDQVEVDETALRGLYEERDAEFNVPERRLVEQLVFPDEDAAQTAKAELDVGGTTFETLV 294

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            ++  SLSDI +G  +   I D+  A      A  G     +   FG  +  V+ +  + 
Sbjct: 295 ADRELSLSDIDMGDVA---IGDLGAAGEAVFAADVGAVVGPLPSDFGPALYRVNGVLEAN 351

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             SF+E    +  ++ + +A   ++   + L++ LA G ++++++  E    + L  +D+
Sbjct: 352 FTSFEEALPVLREELALDRARRLIESRAEGLDDALAGGATLEDLAEEEN--GVVLGQLDW 409

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
                   ++AA          V  +D P        L DGS   +++ E +P R    E
Sbjct: 410 TANTT--DDIAAYDTFRNAAEAVTTEDFP----EVGYLEDGSLFALRLDEVLPPRPEPFE 463

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
           +  T V + ++  + A+ ++++A Q  ++ + EG N
Sbjct: 464 DARTAVSEAYEGDRIAKALAAQAEQ--IKTATEGNN 497


>gi|83593225|ref|YP_426977.1| hypothetical protein Rru_A1890 [Rhodospirillum rubrum ATCC 11170]
 gi|83576139|gb|ABC22690.1| hypothetical protein Rru_A1890 [Rhodospirillum rubrum ATCC 11170]
          Length = 632

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 134/577 (23%), Positives = 248/577 (42%), Gaps = 39/577 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ S++W+AK  L +L + F +WG++D +    G    ++VG Q        N +
Sbjct: 1   MLDALRRGSKSWLAKSLLGLLVLSFGVWGVADYMVRGGGPKPAITVGGQSFGAGYVRNQF 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            ++LG + ++ G  +++E+A ++GL  + +  +V GA LD+    +GL A    +   I 
Sbjct: 61  SEDLGRLRRQ-GIELDAEQAIAMGLLGQTVQTIVQGAVLDESGRRLGLVASDDALRSAIQ 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             PLF G D +F  D     LA   + E  YID   + + R  +V   V  +     ++D
Sbjct: 120 NDPLFKGADGRFDRDRLSRILAANNLTEAGYIDLRRRDMIREALVEPVVSAVGVPGPIVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                  E R    + +    +PA    P+   L +  ++  D + APEY+    +L   
Sbjct: 180 VLAAHASERRVAQVLTVAKAALPAPTTKPTEEALEKVRQENLDRFTAPEYRTAKALLLTR 239

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                 I ++++ +   YE + +++  P  R V Q +F ++++AD A   ++     +  
Sbjct: 240 DAVAGSITVADEAIAQYYEAHGDEFVQPASRRVTQALFSSREQADSALVLIRSSSASLDE 299

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           A  +      I +G+ +   +P  +   +  +    G          G+ +  V+   P 
Sbjct: 300 ASRKITGSGAIDMGNVTDSSLP--APLPATIAAQDVGVVGEPAQSPLGWHLFLVTAATPE 357

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDY----KRLEEFLALGTSMDEISRREKIVSIDL 415
            T    EV    A Q+R T AS++  +       ++E+ LA G  +DE++       + L
Sbjct: 358 TTKPLAEV----APQIRKTLASDQAVDSLYALSTQVEDLLAGGAGIDEVA-----TQVGL 408

Query: 416 PL----VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD--GSYMWVQIK 469
           PL    VD  G    G     +P     L  +FG    L +     + D  G +   +++
Sbjct: 409 PLLAFSVDSQGNSQDGTPAKGLPSDGAFLKTLFG----LGEGEVSPMIDYEGGFFIQRLE 464

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL---VLEYSKEGKNFRDIGKNLGA 526
              P   R L+ V  +V   W+     +E ++ A +L   +L  +K G +F D+     A
Sbjct: 465 TITPRAPRPLDAVRAEVVALWQD----QEQTATAGRLAEGLLSRAKAGASFEDLAAAEPA 520

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
           S L+T      D  +     DG ++    P  +V+  
Sbjct: 521 SRLSTTPPVTRDGRS-----DGAAEADPLPGALVQAM 552


>gi|296535271|ref|ZP_06897478.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296264392|gb|EFH10810.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 507

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 127/505 (25%), Positives = 233/505 (46%), Gaps = 29/505 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  +R+ + TW AKI   +L + F +WG+ D +      ++V  VGR  +       + 
Sbjct: 1   MLTALRRLAGTWFAKILFALLVLSFAVWGIEDIVRQFGSDTSVARVGRDAIEVPEAQAAA 60

Query: 61  KQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV--- 115
           ++E+G + +++G  F +  E   +  L ++ ++ LV      Q    +GL      V   
Sbjct: 61  RREIGRVQRQLGGSFEITPEMGEA--LTRQAVEGLVMERVQRQEARHLGLAVPEAAVRDY 118

Query: 116 -WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
            WG     P F G D +F+   F S L    ++E E++      L R  +VG    G   
Sbjct: 119 VWG----IPAFQGPDGRFNRIAFDSFLRNNQLSEGEFLTLLRADLERQQMVGAVRAGAAG 174

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + L      +  E R  + + L     P  A P  A L ++ E   D + APEY+R++ 
Sbjct: 175 PDALTRPLLAWEREQRLAEIVRLPFSAAPEPAAPEEAQLRRFHENNADRFSAPEYRRVTL 234

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
            +         ++ + +EL+A YE +++ Y  PE R+++Q + P++ +A+   +  ++G 
Sbjct: 235 AVLSPETVMGDVQATEEELRAAYEAHRDHYERPERRSLQQALLPDRAKAEALARQWREGA 294

Query: 295 KFIQLAEEQGKSLSDIS-LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            F  + +    +    + LG   +  +P   LA++ F+L + G   PV    FG+ + HV
Sbjct: 295 DFAAITQAAEAAGGQATELGESDRAGLPLPELAEAAFTLPQGGVSEPV-QSPFGWHVVHV 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + I       F+ V+ ++  Q++  +A++   E   ++E+ LA G S+ E++ R  +  +
Sbjct: 354 TAIAAGEDRGFEAVRPEVEAQVKRERAADLAYERANQVEDALAAGGSLAELAPRFGL-GV 412

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQ----LLFRVF----GKDDPLSKDHTVALPDGSYMW 465
              +VD AG+  +G + AA+P   Q     L  VF    G+   L++    AL       
Sbjct: 413 AQAVVDAAGRTPEGAQ-AALPLSGQARDIALRAVFAAQQGQMPRLAEAGQTAL-----FA 466

Query: 466 VQIKESIPARDRKLEEVLTDVKKDW 490
            +++E IPA  R  E V   V+  +
Sbjct: 467 FELQEVIPAALRPFETVEPQVRAAY 491


>gi|83942589|ref|ZP_00955050.1| hypothetical protein EE36_16152 [Sulfitobacter sp. EE-36]
 gi|83846682|gb|EAP84558.1| hypothetical protein EE36_16152 [Sulfitobacter sp. EE-36]
          Length = 614

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 235/489 (48%), Gaps = 16/489 (3%)

Query: 36  SVSGSS-TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           +++GS+ TV  VG + +    +    +Q++  I  + G  ++ + A+++GLD+ +L  LV
Sbjct: 31  NLNGSARTVGEVGDKSISVDDYARELQQQIRAIESQSGEQLSFQEAQAIGLDRAVLQRLV 90

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
               LD   +++GL      +   +   P F G D  F  + +   L + G+NE E+   
Sbjct: 91  RLRALDNEADEMGLSIGDANLRERVVEIPSFQGVDGNFDREGYRFALQQAGLNENEFEQS 150

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVL 213
             +   RT +     GG+   +   D    +  E RS  +  L    + A + D ++A L
Sbjct: 151 LREEAGRTLLQEAITGGVAMPDAYADTLVSYVGEQRSFTWAKLTQDDLDAPLPDATDAQL 210

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
             ++++  D +  P  K ISYI     +   ++E++++ELQA Y+   ++Y  PE R VE
Sbjct: 211 QAYYDENADQFILPASKTISYITMGPQDLLDEVELTDEELQAAYDDRADEYIQPERRLVE 270

Query: 274 QLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
           +LVF +Q+ AD+A  +L+  G  F  L  ++G SLSD+ LG  S++ +   +  D++F+ 
Sbjct: 271 RLVFRDQEAADQAAAALEVDGNTFEGLVADRGLSLSDVDLGDLSQQQLG--AAGDAVFA- 327

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           AK GD    +  + G  +  V+ + PS   +F+E +  +   +   +A+  V+   + L+
Sbjct: 328 AKVGDIVGPLPSNLGPALFRVNGVLPSLNTTFEEARPTLVQDLAADRAARLVEVRAQDLD 387

Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
           + LA G ++++I+   K+    L  +++       + +AA     +   R+   D P   
Sbjct: 388 DQLAGGATLEQIAEESKMT---LSTIEWTQD--SSESIAAYAGFREAATRLTEGDFP--- 439

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
                L DGS   +++  +   R    +    DV + W+  +    +  KA  L  E + 
Sbjct: 440 -QIQQLDDGSVFAMRLDGTKEERPNPFDAARADVAEAWQNEQLITALRVKAETLQAELA- 497

Query: 513 EGKNFRDIG 521
           +G +F ++G
Sbjct: 498 DGADFAELG 506


>gi|83953830|ref|ZP_00962551.1| hypothetical protein NAS141_06383 [Sulfitobacter sp. NAS-14.1]
 gi|83841775|gb|EAP80944.1| hypothetical protein NAS141_06383 [Sulfitobacter sp. NAS-14.1]
          Length = 614

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 235/489 (48%), Gaps = 16/489 (3%)

Query: 36  SVSGSS-TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           +++GS+ TV  VG + +    +    +Q++  I  + G  ++ + A+++GLD+ +L  LV
Sbjct: 31  NLNGSARTVGEVGDKSISVDDYARELQQQIRAIESQSGEQLSFQEAQAIGLDRAVLQRLV 90

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
               LD   +++GL      +   +   P F G D  F  + +   L + G+NE E+   
Sbjct: 91  RLRALDNEADEMGLSIGDANLRERVVEIPSFQGVDGNFDREGYRFALQQAGLNENEFEQS 150

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVL 213
             +   RT +     GG+   +   D    +  E RS  +  L    + A + D ++A L
Sbjct: 151 LREEAGRTLLQEAITGGVAMPDAYADTLVSYVGEQRSFTWAKLTQDDLDAPLPDATDAQL 210

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
             ++++  D +  P  K ISYI     +   ++E++++ELQA Y+   ++Y  PE R VE
Sbjct: 211 QAYYDENADQFILPASKTISYITMGPQDLLDEVELTDEELQAAYDDRADEYIQPERRLVE 270

Query: 274 QLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
           +LVF +Q+ AD+A  +L+  G  F  L  ++G SLSD+ LG  S++ +   +  D +F+ 
Sbjct: 271 RLVFRDQEAADQAAAALEVDGNTFEGLVADRGLSLSDVDLGDLSQQQLG--AAGDDVFA- 327

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           A+ GD    +  + G  +  V+ + PS   +F+E +  +   +   +A+  V+   + L+
Sbjct: 328 AEVGDIVGPLPSNLGPALFRVNGVLPSLNTTFEEARPTLVQDLAADRAARLVEVRAQDLD 387

Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
           + LA G ++++I+   K+    L  +++       + +AA     +   R+   D P   
Sbjct: 388 DQLAGGATLEQIAEESKMT---LSTIEWTQD--SSESIAAYAGFREAATRLTEGDFP--- 439

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
                L DGS   +++  +   R    +    DV + W+  +    + +KA  L  E + 
Sbjct: 440 -QIQQLDDGSVFAMRLDGTKEERPNPFDAARADVSEAWQNEQLITALRAKAETLQAELA- 497

Query: 513 EGKNFRDIG 521
           +G +F ++G
Sbjct: 498 DGADFAELG 506


>gi|259418802|ref|ZP_05742719.1| putative peptidyl-prolyl cis-trans isomerse D [Silicibacter sp.
           TrichCH4B]
 gi|259345024|gb|EEW56878.1| putative peptidyl-prolyl cis-trans isomerse D [Silicibacter sp.
           TrichCH4B]
          Length = 611

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 126/505 (24%), Positives = 245/505 (48%), Gaps = 19/505 (3%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINSWKQE 63
           ++  S+T+V  I + +LFV    +G      +VSG++ T+ +VG   V    +  + +QE
Sbjct: 1   MKNLSKTFV-WILMGLLFVGLAGFGA----INVSGTTRTLATVGDATVSVDDYARALQQE 55

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
              I  + G  +   +  S+G+D+ +L  LV+ A LD  + ++GL      +  EI +  
Sbjct: 56  QRAIQAQSGRSIPLSQLISMGVDRGVLSGLVASAALDNELGELGLSVGDEVLLKEITQIS 115

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
            F G D  FS D +   L   G++E ++ +      +RT + G   GG R   +L +   
Sbjct: 116 AFQGSDGNFSRDNYRFALDNAGLSEADFEEDMRSETARTLLQGAITGGTRMPAVLGETLT 175

Query: 184 RFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
            +    RS  Y+ L+   V   A +P+   L  ++E + +++  PE K I+Y+       
Sbjct: 176 DYIGARRSFAYVRLSENDVILTAVEPTEDELKSFYETHIEDFTLPETKVITYVALRPDAL 235

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAE 301
             ++E+    L+A YE+   ++  PE R VEQLVFPN+  A  A   L   G  F  L E
Sbjct: 236 VDEVEVDETALRALYEERDAEFNVPERRLVEQLVFPNEDAAATAKAQLDVGGTTFETLVE 295

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           E+  +LSDI +G  + + +   +  D++F+ A+ GD    +   FG  +  V+ +  +  
Sbjct: 296 ERELTLSDIDMGDVAIDTLG--TAGDAVFA-AEVGDVVGPLPSEFGPALYRVNGVLEANF 352

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
            SF++    +  ++ + +A   ++   + +++ LA G +++++++ E    + L  +D+ 
Sbjct: 353 TSFEDALPTLREELALDRARRVIETRSEGIDDALAGGATLEDLAKEEN--GMVLGQLDWT 410

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
                  ++AA          +  +D P + D+   L DGS   +++ E +  R +  E+
Sbjct: 411 ADTT--DDIAAYDTFRNAAEAITIEDFP-AVDY---LEDGSLFALRLDEVLAPRPQPFED 464

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQL 506
             T V + +K  + A+ ++ +A+Q+
Sbjct: 465 ARTAVTEAFKGDRIAKALAEQADQI 489


>gi|254511419|ref|ZP_05123486.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
 gi|221535130|gb|EEE38118.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
          Length = 613

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/482 (23%), Positives = 224/482 (46%), Gaps = 15/482 (3%)

Query: 36  SVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           S++G+  TV  VG + V   ++    ++E+  +  + G  +   +A  +GLD+  L  L+
Sbjct: 31  SLTGTVRTVAQVGDESVSVDAYFRELQREIRAVEAQTGQAMQIAQAHDLGLDQLALSRLI 90

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
           + A LD  +  +G+      +  EI + P F G +  F  + +  +L + G+ + E+   
Sbjct: 91  ALAALDNEVAQLGISIGDENLQNEIVQIPAFQGVNGTFDREAYRFQLEQVGMTDAEFESD 150

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVL 213
             K  +RT V G  +GG+     L +    +    RS     L+   +   +  P++A +
Sbjct: 151 LRKESARTIVQGAVIGGVEMPLALTEALANYVLARRSFTLATLSAEALETPVPQPTDAQI 210

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
             ++++  D +  P  KR++Y +         +EI  D L+  Y++   +Y  PE R VE
Sbjct: 211 QAFYDENTDRFTLPRTKRLTYAILSPEMLLDAVEIDEDALRRLYDQRAGQYLQPERRLVE 270

Query: 274 QLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
           +L +P+++ A EA   L+  G  F QL  ++   LSD+ LG  ++E + D   AD++F+ 
Sbjct: 271 RLPYPSEEAATEALAQLEVGGADFEQLVRDRQLELSDVDLGDVTREDLGDA--ADTVFA- 327

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           A   D    +   FG  +  ++       VSF+E + ++  ++   +A   ++   + + 
Sbjct: 328 AGIDDVVGPLPTVFGPALFRINGTLAENNVSFEEARPELREELAADRARRLIEAQAEDIN 387

Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
           + LA G ++++++       ++L  +D+  +   G  VAA          V   D P   
Sbjct: 388 DMLAGGATLEDLA---ADTEMELGTIDWTQQ--SGDGVAAYDGFRAAAVAVQEGDFP--- 439

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
                L DGS   +++ + +  R   L+     V + W  V+TA  + ++A+ ++ + + 
Sbjct: 440 -EIGFLEDGSIFALRLNQVLEPRPEPLDSARARVAEAWMQVETARALQNQADAILTQLAT 498

Query: 513 EG 514
           +G
Sbjct: 499 DG 500


>gi|94497171|ref|ZP_01303743.1| hypothetical protein SKA58_13253 [Sphingomonas sp. SKA58]
 gi|94423276|gb|EAT08305.1| hypothetical protein SKA58_13253 [Sphingomonas sp. SKA58]
          Length = 650

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 137/535 (25%), Positives = 237/535 (44%), Gaps = 34/535 (6%)

Query: 84  GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
           G   ++ D LV   TL  + +D G+      V  +IA+ P F      FS+D F + LAR
Sbjct: 90  GGGAQVFDQLVQSLTLRAYADDQGIHISKRLVDAQIAQIPAFQDAAGNFSNDNFRALLAR 149

Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-NLLLDQAKRFYFENRSVDYIVLNNRHV 202
           E ++E+   D  ++ + +  ++     G RPS NL+L  A     E R           +
Sbjct: 150 ERLSEQALRDDISREILQRQLLAPIGIGARPSENLVLPYAS-LLLEARQGQVAA-----I 203

Query: 203 PAIA-----DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
           PA+A     DP++A L  +++K  D +  PE +RI Y + D     +    S+ E+ A Y
Sbjct: 204 PAVAFLDDKDPTDAQLADFYKKNSDRFTIPEQRRIRYAVVDAERFAQASMPSDAEISAYY 263

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
            +NK  Y + E R+VEQLV P +  A      +K GK   Q A  QG  LS  +L + S+
Sbjct: 264 NQNKANYAASENRSVEQLVLPTEAGAKAIAAQVKAGKSLPQAA--QGAGLSVSTLDAQSR 321

Query: 318 EYIPDVS---LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
             +   +   +AD++F+ A++G+    + G  G+++  V+ ++         V+ +I   
Sbjct: 322 GQLTSATSKAVADAVFA-ARQGELIGPVRGPLGWLLLRVTAVQDKPARPLAAVRDEIVKT 380

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
           +R+ K  + + +   +LE+ +A G + DE+++   +     P +   GK VK     A  
Sbjct: 381 LRVQKEKQLLGDFTAKLEDQIADGGTFDEVAKDNGLKLETTPPLLATGKQVKDMAYVAPA 440

Query: 435 YKEQLLFRVFGKDDPLSKDHTVAL----PDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
             + LL   F     +S D    L    PD  Y  +   + I A    L EV + V+  +
Sbjct: 441 DVQPLLSPAF----TMSADDDAQLVPITPDKRYALIAPGQIIAAAPPPLAEVKSLVQAQY 496

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL-----LTTNQINRMDNENKFFG 545
           K     ++  + A Q+  + +K G    D     G  L     L   + + M  E +   
Sbjct: 497 KLNAGNQKAKALAEQIRAKVAK-GTKLADAISQAGVKLPAPQTLGGRRADIMRAEQRPPA 555

Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
              +S +F+     VK  PI  G  Y V ++T  + G  +   + ++ +   M +
Sbjct: 556 E--VSILFAMAENSVKTLPISEGRGYFVVQLTKIERGDAKGNPQLLAQVRDQMGE 608


>gi|126737880|ref|ZP_01753610.1| hypothetical protein RSK20926_19602 [Roseobacter sp. SK209-2-6]
 gi|126721273|gb|EBA17977.1| hypothetical protein RSK20926_19602 [Roseobacter sp. SK209-2-6]
          Length = 613

 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 146/608 (24%), Positives = 266/608 (43%), Gaps = 37/608 (6%)

Query: 13  VAKIFLVVLFVPFLIWGLSD-ALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQK 70
           ++K F+ +L +  LI GL+     + SGS S+V  VG ++V    +    ++E   + Q+
Sbjct: 8   LSKTFVWIL-MGMLIVGLAGFGAVNFSGSVSSVALVGDEEVSVEEYFRELQREQRSLQQQ 66

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
            G VV   +  + GLD+ +L  L+S A LD  +  +G+      +  E+ + P F G   
Sbjct: 67  TGQVVTLAQMTAFGLDRAVLGRLISLAALDNEVNSLGISIGDENLLDELTQIPSFQGPSG 126

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
            F  + +   L    + E E+     K  +RT V G  +      + L D   ++    R
Sbjct: 127 NFDREAYRFALQNANLTEAEFEADLRKEAARTLVQGAIISNAEMPSTLADTLTKYIGARR 186

Query: 191 SVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           S  Y++L       I   P +A L  ++E   + +R PE K+I+Y           IE+ 
Sbjct: 187 SFSYVLLEPAQFSLIQIVPDDAELKSFYEANPEAFRLPETKQITYARLSPDMILDGIEVD 246

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS 308
            + L+A YE+ K++Y  PE R VE+LVF +Q  AD A   L+ G   F +L   +G  L 
Sbjct: 247 AEALKALYEERKDQYQVPERRLVERLVFSDQAAADRATADLQAGTVTFEELVGNRGLDLQ 306

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
           DI +G  +KE   D+  A      A  G  +  +    G  I  ++    +   SF+  +
Sbjct: 307 DIDMGDVTKE---DLGAAAEGVFAAAVGSVSSPLPSDLGPAIFRINGQLDARITSFEAAE 363

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
            ++  ++   +A   +++  + +++ LA G +++E+         D+ +       + G 
Sbjct: 364 AELRQELAADRARRVIEQQAESIDDILAGGATLEELKDE-----ADMEVATLGWTGIPGD 418

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVA-LPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
            +AA  Y+    FR       L     V  L DGS   +++ E +P R    +     V 
Sbjct: 419 GIAA--YEG---FRTAADAVTLEDFPAVEFLGDGSIFALRLDEVLPERPEPFDAAKEKVL 473

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
             W   + A+ ++++A +++      G    D+       L  T  ++R          D
Sbjct: 474 AAWDADRQAKAITARAGEILTATKNAGAFPDDLEVATEEGLTRTAYLDRTP-------AD 526

Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-------KDKFISYLTQMMNK 600
            ++Q+F+     VK    E+  S VV  V+ S++ P +E       ++ F + L Q ++ 
Sbjct: 527 MMNQIFTMTPGEVKIITGED--STVV--VSLSEILPAEEGEEMALMREAFTAQLDQALSN 582

Query: 601 DLLDSVIA 608
            L  + ++
Sbjct: 583 ALFQAYVS 590


>gi|294677876|ref|YP_003578491.1| peptidyl-prolyl cis-trans isomerase D [Rhodobacter capsulatus SB
           1003]
 gi|294476696|gb|ADE86084.1| peptidyl-prolyl cis-trans isomerase D [Rhodobacter capsulatus SB
           1003]
          Length = 609

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 190/413 (46%), Gaps = 14/413 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML    K+   WV    L+ + V   + G     FS  G S + +VG  ++    + ++ 
Sbjct: 1   MLRSSGKSVTVWV----LLAMIV-LGLGGYQVGNFSNRGQS-IGAVGESEITARDYADAL 54

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +QE+  ++ +IG   +    R++GLD+ +   L + A L +    + L      V  +I 
Sbjct: 55  RQEINAVAAQIGHPPSMSEVRAMGLDQVVQAQLFNTAALSEQARRLELSVGDAEVSRQIR 114

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +  F G    F  + +   L REG+ E E+       ++R+ + G   GG+     LLD
Sbjct: 115 SARPFQGATGSFDRETYREVLRREGLTETEFETRLRADIARSILQGAVAGGVPAPAALLD 174

Query: 181 QAKRFYFENRSVDY--IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
               +  E R V +  I      +PA   P  A L  +++ +   +  PE + ISY+   
Sbjct: 175 GYVGYLGETRDVAFAEIPATGISLPA---PDAAALKAYYDAHLAEFTRPETREISYVWLT 231

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFI 297
               + +I I   +L+A Y++ K +Y  PE R + +LVFP Q EA+     +  G     
Sbjct: 232 PDMLKDEIAIDEAQLRATYDERKAEYVQPERRKLAKLVFPTQAEAEAGMAKIAAGTASLA 291

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            LAE +G S +DI LG  S++ I   +  +++F+    G   P      G  +     + 
Sbjct: 292 DLAEARGLSAADIDLGDVSQDEIGGAA-GEAVFARTTPGVIGP-YETDLGPALFDFQAVT 349

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
           PS T +F+E + DIA ++ + KA   + +    LE+ LA G +++++ +  K+
Sbjct: 350 PSETTTFEEARGDIAAELAMEKARRMIADMTTDLEDRLASGATLEDMVKETKM 402


>gi|119384865|ref|YP_915921.1| putative peptidyl-prolyl cis-trans isomerse [Paracoccus
           denitrificans PD1222]
 gi|119374632|gb|ABL70225.1| putative peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
          Length = 652

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 183/372 (49%), Gaps = 7/372 (1%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
            G++ + SVG  ++    +  + + E+   S + G  +++  A+++G+D+  L  L + A
Sbjct: 31  GGTADIGSVGGVEISAQDYARTLRAEMQEFSARTGRQISAAEAKTIGVDQAALARLYTAA 90

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
            L+     +G+      V G+I     F G + +F   ++   L REG+ E E+ +H  +
Sbjct: 91  ALEAEANRLGVSVGDQAVAGQITGIAAFRGLNGQFDRAIYADALRREGMREAEF-EHDLR 149

Query: 158 M-LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQ 215
           M ++R  +    + G+     ++ Q + +  E R + +  L    +P  +A P    L  
Sbjct: 150 MDMARLILQDAALAGVSAPQPVVAQTQGWLLETRDIHWRELTAEDLPTPVATPDETTLQA 209

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           W +   D + APE ++I+Y+       E ++E+    L+  Y+   E++  PE R VE+L
Sbjct: 210 WHKANADRFTAPEIRQITYVWLTPEMLEGEVEVDEQALRDLYQDRIEEFQQPERRMVERL 269

Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           VFP    A+EA   +  G+  F QLA E+G SL+DI LG  ++  +   S  +++F+L +
Sbjct: 270 VFPTMAAAEEAKARIDSGEVTFEQLAAERGLSLADIDLGEVARADLG--SAGEAVFALEE 327

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G   P      G  +  ++ I     + F++ + D+  +  + +A  +++E      + 
Sbjct: 328 PGVAGPA-SSDLGPALFSMNAILEPLDIPFEQARDDLRLEAAVDRARRQIEERAGEFADL 386

Query: 395 LALGTSMDEISR 406
           LA G +++++++
Sbjct: 387 LAGGAALEDMAQ 398


>gi|258542318|ref|YP_003187751.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633396|dbj|BAH99371.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636455|dbj|BAI02424.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639508|dbj|BAI05470.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642564|dbj|BAI08519.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645619|dbj|BAI11567.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648672|dbj|BAI14613.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651725|dbj|BAI17659.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654716|dbj|BAI20643.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-12]
          Length = 639

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 129/559 (23%), Positives = 242/559 (43%), Gaps = 36/559 (6%)

Query: 1   MLEIIRKA-SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFIN 58
           M+  +R+    +W+ ++  +V+F+ F+ WG+ D +  +   + VV+ VG+Q+V       
Sbjct: 1   MISYLRRVFVESWLGRVTAIVIFLAFVGWGIGDVMGYMGEETDVVAKVGQQQVSADDLAT 60

Query: 59  SWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + + EL  I++++G    S+   A    +  +IL  L+  A L    + + +      V 
Sbjct: 61  ALQSELPTIARQMGVTDPSQIPLAMQRQVAYQILHRLIGQAELLNTAQKLKVVVPDSAVR 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            E+   P F G + +F    F  +L   G+ E+ ++D     L+   ++         S+
Sbjct: 121 DEVFSLPYFKGANGQFDRASFNQKLRDRGLTEQRFLDMVRNDLTTRTILQPLAQAGSVSD 180

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +L +   +  + R VD++ +     P    P +AVL +++  +   +R PE +    ++
Sbjct: 181 TMLQRFLTYGAKTRVVDFVSIPFDAQPTPKAPDDAVLQRYYNNHPWMFRTPELRHAKIVV 240

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                    I +   +++  Y++ K +Y  PE R ++ +   +Q +A     + K G  +
Sbjct: 241 LSPQTVADSITLGEADIKRIYDEQKSRYDVPETRDIQLITLQDQAQATAIANAWKVGGNW 300

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            Q  +   K  + + + +     IP  +L  +IF  A +G  +  +    G+ +  V+ I
Sbjct: 301 -QAIQNSAKDAAAVEMPNARPSTIPSATLRQAIFQ-APEGQVSGPLKTESGWAVFRVTKI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
               T  +++ KKDI +Q R   A     E  ++L++ LA G  +D I         DL 
Sbjct: 359 TAPHTTPYEDAKKDILSQYRAAVAPSVAGERKRKLQDALA-GKGLDAI-------PADLG 410

Query: 417 LVDFAGK-DVKG----KEVAAIP----YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
            V  AG  D +G    KE A +P     +E ++ ++F +  P ++   V  PD S   V+
Sbjct: 411 AVAAAGTLDAQGMTADKEPAPLPASGKLREAIIHQIFTQ-KPGARATLVDGPDNSSFAVE 469

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           +  + PA  R  E+   DV   W+    AE     AN+       +  N     KN  A 
Sbjct: 470 VDTATPAAPRTFEQAHADVLAAWQ----AEARKHAANE-------QATNLYLATKNKQA- 517

Query: 528 LLTTNQINRMDNENKFFGY 546
           L TTN        +  F Y
Sbjct: 518 LATTNAPGAQMTRDAAFSY 536


>gi|255262468|ref|ZP_05341810.1| peptidyl-prolyl cis-trans isomerse D, putative [Thalassiobium sp.
           R2A62]
 gi|255104803|gb|EET47477.1| peptidyl-prolyl cis-trans isomerse D, putative [Thalassiobium sp.
           R2A62]
          Length = 622

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 116/513 (22%), Positives = 232/513 (45%), Gaps = 23/513 (4%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           W+    L V  + F   GLS  + S+       SVG +++   ++ N   QE+     + 
Sbjct: 12  WIVIGLLFVGLIGFGATGLSGNIRSIG------SVGDKELDLQTYANQLNQEIRAFEAQT 65

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  V+   A+++GLD+ +L  ++    LD     +GL     RV  +I   P F G   +
Sbjct: 66  GSSVSFPEAQTIGLDRAVLARVIGVRALDNEAAQVGLSVGDARVRAQILEIPSFRGPSGE 125

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F  D +   L   G+ E  +     + ++RT + G  + G+  S+   +    +  E+R 
Sbjct: 126 FDRDAYRFSLGNNGLTEATFETQLREEMARTVLQGAVLTGVEASDTYAETLSGYIGESRD 185

Query: 192 VDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
             ++ L+   +   +   ++  L  +++    ++  P  KR++Y+          +EI  
Sbjct: 186 FTWVRLSQADLETELTAATDEQLLDYYQANPIDFTEPAKKRLTYVSLTPEMIVDTVEIDE 245

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD 309
             LQ  Y    + +  PE R VE+LVF +Q++AD A   L +G+  F  L EE+G +LSD
Sbjct: 246 TALQDLYNTRLDTFVQPERRLVERLVFSSQEDADAAAARLTEGEITFDALVEERGLALSD 305

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
           I LG  ++  + D    D++F+ A+ GD    +    G  +  ++ +  +   ++++   
Sbjct: 306 IDLGDLAQPELGDA--GDAVFA-AQTGDVVGPLPTDLGPALFRMNAVLSAQETTYEQALP 362

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD-FAGKDVKGK 428
           ++  ++   +A   + +  + +++ L  G +++E++   ++V   L  +D FAG +   +
Sbjct: 363 ELREELATERARRIIDDASREIDDLLVGGATLEEVAAETEMV---LGQIDWFAGSE---E 416

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
            +A           V   D P          DG    +++ E+I A    LE++   V  
Sbjct: 417 IIAGYDNFRAAANAVTSNDFP----DIERFEDGGLFALRLDETIDAELVPLEDIRGKVVA 472

Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
            W+T +T+  ++ +A  L+ +   EG+    +G
Sbjct: 473 GWETQETSRLLNEQAQGLI-DQVNEGRTLVSLG 504


>gi|254486655|ref|ZP_05099860.1| putative peptidyl-prolyl cis-trans isomerse [Roseobacter sp.
           GAI101]
 gi|214043524|gb|EEB84162.1| putative peptidyl-prolyl cis-trans isomerse [Roseobacter sp.
           GAI101]
          Length = 614

 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 147/616 (23%), Positives = 282/616 (45%), Gaps = 36/616 (5%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSD-ALFSVSGS-STVVSVGRQKVPFSSFINSWKQEL 64
           KA    VAK  + +L +  LI GL      + +G+ S++ +VG + +    +    +Q++
Sbjct: 2   KAKGNSVAKTAVWIL-MGMLILGLGGFGAVNFNGNVSSIGTVGDKDISVDQYARELQQQI 60

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             I  + G  ++ ++A+++GLD+ +L  LV    LD    ++G+      +   I   P 
Sbjct: 61  RAIEGQTGETLSFQQAQAIGLDRAVLQRLVRLRALDNETAEMGISIGDENLRERIIDIPS 120

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F G D  F  + +   L + G++E E+     +  +R+ + G   GG+   ++       
Sbjct: 121 FQGIDGNFDREGYRFALQQAGLSEAEFETSLREEAARSLLQGAISGGVTMPDVYAQTLVN 180

Query: 185 FYFENRSVDYIVL--NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
           F  E RS  +  L  ++   P +A P++A L  +++   +N+  P  K I+YI+    + 
Sbjct: 181 FVGEKRSFTWAALTEDDLQTP-LAAPTDADLQAFYDANPENFMLPASKSITYIILTPQDV 239

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAE 301
             ++EI+ DEL+  Y+     +  PE R VE+LVFPN++ A+ A  +L+  G  F  L +
Sbjct: 240 LDEVEITQDELRKAYDDRAADFIQPERRLVERLVFPNEEAANMAAAALEVSGTTFDALVQ 299

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           ++G +L DI +G  S+  +   +  +++F+ A+ GD    +  + G  +  V+ I PS  
Sbjct: 300 DRGLTLEDIDMGDVSRLELG--AAGEAVFA-AEAGDVVGPLPSNLGPALFRVNGILPSLN 356

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
            +F+E    +   +   +A+  V+   + L++ LA G ++++++   K+    L   ++ 
Sbjct: 357 TTFEEASPALQQDLAGDRAARLVEVRAQELDDQLAGGATLEQLAEETKMT---LGTTEWT 413

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
               +G  +AA          +   D P        L DGS   +++  + P R    E+
Sbjct: 414 ADSDQG--IAAYESFRAAAAALTDGDFP----KIDQLEDGSVFALRLDGTKPERPNPFED 467

Query: 482 VLTDVKKDWKTVKTAEEVSSKAN--QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
               V   W   +  + ++++A   Q  LE    G +F D+G      L  T+Q N +  
Sbjct: 468 ARASVAAAWTADQLLQALTAQAETAQSALEG---GSDFADLG------LTPTDQQN-LTR 517

Query: 540 ENKFFGY-DGI-SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK-FISYLTQ 596
           E    G  DG+ ++VF      ++   I    S  + +V +       E+ +  +  LT 
Sbjct: 518 EAVISGAPDGLMTEVFDAAPGDIRT--IAGTDSVAILRVDSITAAEESEQTRQLLDQLTT 575

Query: 597 MMNKDLLDSVIAYLKS 612
            +N+ L   V A   S
Sbjct: 576 QLNQQLSQDVFALYSS 591


>gi|329113481|ref|ZP_08242262.1| Peptidyl-prolyl cis-trans isomerase D [Acetobacter pomorum DM001]
 gi|326697306|gb|EGE48966.1| Peptidyl-prolyl cis-trans isomerase D [Acetobacter pomorum DM001]
          Length = 639

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 125/556 (22%), Positives = 241/556 (43%), Gaps = 29/556 (5%)

Query: 1   MLEIIRKA-SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFIN 58
           M+  +R+    +W+ ++  +V+F+ F+ WG+ D +  +   + VV+ VG+Q+V       
Sbjct: 1   MISYLRRVFVESWLGRVTAIVIFLAFVGWGIGDVMGYMGEETDVVAKVGQQQVSSDDLAT 60

Query: 59  SWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + + EL  I++++G    S    A    +  +IL  L+  A L    + + +      V 
Sbjct: 61  ALQSELPTIARQMGVSDPSHIPLAMQRQVAYQILHRLIGQAELLNTAQKLKVAVPDSAVR 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            E+   P F G + +F    F  +L   G+ E+ ++D     L+   ++         S+
Sbjct: 121 DEVFSLPYFKGANGQFDRASFNQKLHDRGLTEQRFLDMVRNDLTTRTILQPLAQAGSVSD 180

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +L +   +  + R VD++ +     P    P +AVL +++  +   +R PE +    ++
Sbjct: 181 TMLQRFLTYGAKTRVVDFVSIPFAAQPTPKTPDDAVLQRYYNNHPWMFRTPELRHAKIVV 240

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                    I +   +++  Y++ K +Y  PE R ++ +   +Q +A     + K G  +
Sbjct: 241 LSPQTVADSITMDEADIKRIYDEQKSRYNVPETRDIQLITLQDQAQATAIANAWKVGGNW 300

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            Q  +   K  + + + +     IP  +L  ++F  A +G  +  +    G+ +  V+ I
Sbjct: 301 -QAIQNSAKDAAAVEMPNARPSTIPSTTLRQAVFH-APEGQVSDPLKTEGGWAVFRVTKI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
               T  +++ KKDI +Q R   A     E  ++L++ LA G  +D I         DL 
Sbjct: 359 TAPHTTPYEDAKKDILSQYRAAVAPSVAGERKRKLQDALA-GQGLDAI-------PADLG 410

Query: 417 LVDFAGK-DVKG----KEVAAIP----YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
            V  AG  D +G    KE A +P     +E ++ ++F +  P ++   V  PD S   V+
Sbjct: 411 AVAAAGTLDAQGMTADKEPAPLPASGKLREAIIHQIFTQ-KPGARATLVDGPDNSSFAVE 469

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK-NLGA 526
           +  + PA  R   +  TDV   W+        + +A  L L      KN + +G  N   
Sbjct: 470 VDTATPAAPRTFAQAQTDVLAAWQDEARKHAANEQATTLYL----AAKNKQALGTVNASG 525

Query: 527 SLLTTNQINRMDNENK 542
           + LT +        NK
Sbjct: 526 AQLTRDAAFSFAKPNK 541


>gi|260577282|ref|ZP_05845256.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacter sp. SW2]
 gi|259020526|gb|EEW23848.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacter sp. SW2]
          Length = 625

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/459 (24%), Positives = 204/459 (44%), Gaps = 17/459 (3%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
           SG S + +VG +K+  + +  + +QEL   S ++G  V+ +     G+D+++   L+  A
Sbjct: 42  SGVSEIGAVGDRKIDVNQYARALQQELAAFSAQVGSTVSLQEGIERGIDRQVRQQLLIAA 101

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
            LD   + IGL     RV  E+A    F G    F  + + + L    + E ++  +   
Sbjct: 102 ALDNEADRIGLSVGDARVARELAGMAAFQGAGGSFDRETYRATLKNNSLTEADFEGNLRD 161

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQW 216
            LSR+ + G   GG+     L D    F  E R    + L    +  A+  P+ A L   
Sbjct: 162 DLSRSLLQGAVSGGIVAPAALTDTLYSFIAERRGFSLLRLTEADLKTAVPAPTEADLQAH 221

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +      +  PE +RI+Y           + +    L+A Y+   +++  PE R VE+LV
Sbjct: 222 YTANLPAFTKPEARRITYAALFPATLATTMPVDEAALKALYDSRIDEFVQPEKRLVERLV 281

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +P + +A  A   L  G  F  L  E+G +L  I +G   K  +   +  +++F+L + G
Sbjct: 282 YPTEADATAARAKLDAGTPFETLVAERGLTLEAIDMGDVGKADLG--AAGEAVFALTEPG 339

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
              P+     G  +  ++ I  +  VSF++ +  +   M+   A   + +  + +++ LA
Sbjct: 340 VVGPLAT-DLGPALLRMNAILAAQNVSFEDARDTLVPDMQQDAARRAIGDKLEAIDDALA 398

Query: 397 LGTSMDEISRR--EKIVSID-LPLVDFAGKDVKGKEVAAIP-YKEQLLFRVFGKDDPLSK 452
            G S++++ +     + SID +P V   G+D     +   P ++E     V G       
Sbjct: 399 GGASLEDLGKEFGMAVASIDFVPEVPAEGEDA----ITGYPAFREAATQAVEGD-----F 449

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
             TV L DG  + +++ E +PA    L++    V   W+
Sbjct: 450 AQTVQLDDGGVVALRLDEIVPAAPIPLDQAQEAVTASWR 488


>gi|163746559|ref|ZP_02153917.1| peptidyl-prolyl cis-trans isomerse D, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380444|gb|EDQ04855.1| peptidyl-prolyl cis-trans isomerse D, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 614

 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 136/570 (23%), Positives = 261/570 (45%), Gaps = 35/570 (6%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
           ++ SVG + +    +    +QE+  I  + G  ++  RA+ +GLD+ +L  +V    LD 
Sbjct: 38  SIGSVGDKSISVDQYARQLQQEIRAIEAQTGESLSFARAQEMGLDRAVLQRIVRNRALDH 97

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
              ++G+      +  EI     F G D  F  + +   L + G++E E+     +  +R
Sbjct: 98  EAAEMGISIGDATLRDEIVAISAFQGIDGNFDREGYRFALQQSGMSEAEFETSIREESAR 157

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL--NNRHVPAIADPSNAVLTQWFEK 219
             +    +GG+   +        +  E RS  +  L  ++   P +A+P+   L  +++ 
Sbjct: 158 GLLQRAVLGGVSMPDTYARTLVDYVAEERSFTWARLSADDLDTP-VAEPTEEELQAYYDA 216

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
             D++  P  K I+Y      +   ++E+  +EL+AEY+    +Y  PE R VE+LVF N
Sbjct: 217 NADDFMLPASKSITYAWLRPEDLLDEVEVPEEELRAEYDARSSEYDQPERRLVERLVFAN 276

Query: 280 QKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           Q+ AD+A  +L+  G  F  L EE+G +L+D+ +G  +K  +      D++FS A+ G  
Sbjct: 277 QEAADQAAAALEVDGTTFEALVEERGLALADVDMGDVAKSDLD--GAGDAVFS-AESGAI 333

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
              +  S G  +  V+ I P+  V F+E ++ +   + I++A+  V+   + +++ LA G
Sbjct: 334 VGPLPSSLGPALFRVNAILPAQNVPFEEAREVLEETLAISRATRAVEARAQEIDDRLAGG 393

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD---HT 455
            +++++ +  K   ++L  +D+      G  +AA        FR       LS D     
Sbjct: 394 ATLEDLGKETK---MNLGTIDWTEDSSDG--IAAYGA-----FREAAAG--LSADAFPQI 441

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
             L DG    +++ E+ P R    +    +V+  W+  +  E +++KA  L  + + +G 
Sbjct: 442 DQLDDGGIFAMRLDETKPERPNPFDAARAEVEAAWRNAQIVEALTAKAENLTADLA-DGG 500

Query: 516 NFRDIG--KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
           +F   G    LG  +  ++ +   D     F    + QVF      V   P   G   VV
Sbjct: 501 DFEAAGLEPQLGEGMTRSSYV---DGTPDTF----MDQVFDLDEGGVAVLPA--GDHVVV 551

Query: 574 FKVTN-SKVGPVQEKDKFISYLTQMMNKDL 602
            +V + +  G   +    +  L+Q +++ L
Sbjct: 552 LRVDSVTAAGENDQTQALMDRLSQQLDQAL 581


>gi|218680686|ref|ZP_03528583.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CIAT 894]
          Length = 194

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 117/194 (60%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M  I+R+A++TWVAK+ +++L   F IWG+S +L +   S+TVV+VG Q V  + F  ++
Sbjct: 1   MFHILRRAAQTWVAKLLMLLLVASFGIWGVSRSLITGGNSTTVVTVGDQHVDVNEFHLAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +SQ+ G  +  E+AR+ G+++++L  LV+GA+LDQ  ED+ L     R+   IA
Sbjct: 61  QRQVASLSQQFGMRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + KF  ++F+SRL    I + +YI   +K+  R+ VV     G      L+D
Sbjct: 121 DDPAFKAVNGKFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180

Query: 181 QAKRFYFENRSVDY 194
             K +  E+RS+DY
Sbjct: 181 ALKLYGDESRSIDY 194


>gi|119471187|ref|ZP_01613719.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Alteromonadales bacterium TW-7]
 gi|119445843|gb|EAW27125.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Alteromonadales bacterium TW-7]
          Length = 633

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 137/563 (24%), Positives = 247/563 (43%), Gaps = 49/563 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFI 57
           MLE IR+ S+  VAKI L  + + F + G+   L    G +T   V  V   K+  + F 
Sbjct: 1   MLEKIREGSQGPVAKIILGAVILSFALAGIGSYL----GQTTEQPVAEVNGVKISQTEFN 56

Query: 58  NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +++ E   + Q+ G     + ++      + + ++D LV      Q   ++GL      
Sbjct: 57  RAYQNERNRLEQQFGEYFTQIAADPNYMAQIRQGVIDRLVQQELQSQLAAELGLRVSDDT 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V   I   P F   D KF++D ++  + +       + ++  + ++R+ +V    G    
Sbjct: 117 VRKTILELPYFQLGD-KFNNDRYLQVIRQMNFQPDTFREYLREDMTRSQLVSAVAGTDFA 175

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
               L  A     + RS+DY+V+N   +    + S   ++ +++     + +PE   ++Y
Sbjct: 176 LESELKSAIALQQQTRSIDYLVINKESLADNVEVSEQEVSDYYDLNASQFLSPELISVNY 235

Query: 235 ILFDVHEKEKKI---EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----- 286
           +      K + I    ++ ++++A YE+NK +Y  PE R V  ++  N ++ D A     
Sbjct: 236 VEL----KAENIVVGSVTEEDVKASYEQNKAQYVEPEKRRVSHILIDNSEDDDAAKAKVD 291

Query: 287 --FQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPV 341
             +  L++G  F +LAE     +    +G    + +  + D +  D+ FSL  KGDF+ V
Sbjct: 292 ALYAELQQGADFAELAESSSDDIVSAEMGGDLDWIERDVMDPAFEDAAFSLEAKGDFSEV 351

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +   FGY I  +++I+P     F +VK D+  ++   + +EK+   Y +  E  A+    
Sbjct: 352 VASEFGYHIIKLTDIQPQQVKPFDDVKADLRAEL---ERAEKIDAFYDKQTEMGAIAF-- 406

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAI-----PYKEQLLFRVFGKDDPLS---KD 453
            EIS R     +D    + A  DV+   + A+     P     +       D L      
Sbjct: 407 -EISDR-----LD-DAAEVAELDVQSTPLLALNALPEPLNTPAVITALTSVDLLEDKVNS 459

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
             + L D   + V+I E  PA  + L +V   +K      KT+E    KA  L  E  + 
Sbjct: 460 EVIELGDEHIVIVRINEHQPASTKPLSDVSEQIKTRLVNDKTSELAKDKARSLFAEI-QA 518

Query: 514 GKNFRDIGKNLGASLLTTNQINR 536
           GK+  DI    G +L   +Q+NR
Sbjct: 519 GKSLNDIATEQGLTLRQESQLNR 541


>gi|163731980|ref|ZP_02139426.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter
           litoralis Och 149]
 gi|161394278|gb|EDQ18601.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter
           litoralis Och 149]
          Length = 612

 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/482 (22%), Positives = 220/482 (45%), Gaps = 16/482 (3%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
           T+ + G + +P   +    +QE+  + Q+   V+  ++A+ +GLD+ +L  LV+  +LD 
Sbjct: 37  TIGTAGDKPIPVDDYFRQLQQEIRAVEQQTREVLPFQQAQQMGLDRAVLQRLVATRSLDH 96

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
              ++GL      +   I +   F G + +F  + +   L + G++E E+     + ++R
Sbjct: 97  ETSELGLSIGDEELRTRILQISAFQGINGEFDREGYRFALEQTGLSEAEFETQLREEVAR 156

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKY 220
           T V G  +GG+      +D    +  E RS  + +L+   +   +  P +A+L   ++  
Sbjct: 157 TIVQGAVLGGIAMPETYVDTLVSYIGEQRSFTWSLLDASDLATPLGAPDDAILRAHYDDN 216

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
            D +  PE K+I+Y           +E+  + L+  Y +   ++  PE R VE+L F + 
Sbjct: 217 IDVFTLPETKQITYAWLTPDMLLDSVEVDEEALREAYAEQSAEFNQPERRLVERLAFLDT 276

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           + A +A  +L  G  F  L   +G +L DI LG  S+    ++  A +    A  G    
Sbjct: 277 QSAQQAADALTAGDSFDDLVRGRGLALEDIDLGDVSE---AELGAAGAGVFAADVGAVVG 333

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
               + G  +  V+ +  +    F+E    +  Q+   +AS  V    +  ++ LA G +
Sbjct: 334 PFPSTLGPALFRVNAVLAAQETPFEEAIDVLRPQLAADRASRLVAAQAESFDDLLAGGAT 393

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
           +++++    +V   +  +D+       +E+AA P   Q    V  +D P       +L D
Sbjct: 394 LEDLASETDMV---VAQIDWTAGST--EEIAAYPTFRQAAASVGPRDFP----EIASLDD 444

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK-ANQLVLEYSKEGKNFRD 519
           G    +++   +P R    +E+  ++   W+  +TA+ ++ + A Q+ L   + G +F D
Sbjct: 445 GGLFALRLDTVLPPRPAPFDEIREEIIAHWEAAETAKRLAEQVAGQVGL--LENGSSFAD 502

Query: 520 IG 521
           +G
Sbjct: 503 LG 504


>gi|254463425|ref|ZP_05076841.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacterales
           bacterium HTCC2083]
 gi|206680014|gb|EDZ44501.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 615

 Score =  136 bits (343), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 117/522 (22%), Positives = 237/522 (45%), Gaps = 25/522 (4%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           W+    L+V    F    L   + SV       +VG + +    +  + +++L  IS + 
Sbjct: 14  WILLALLIVGLAGFGATNLGGNIRSVG------AVGDKTISVELYSRTLQEDLRAISAQA 67

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  +    A+++G+D++ L  +++   LD    ++GL     ++  +I     F G + +
Sbjct: 68  GQNIPFSTAQALGVDRQALARVITTRALDHETAELGLSVGDAQLQQQILSMSAFQGINGQ 127

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F  + +   L   G++E E+ +   +  +RT V G  + G    +   +    +  E R+
Sbjct: 128 FDREAYRFTLENAGLSEAEFEETLREEAARTLVQGAILSGNTVPDTYANTLVAYIGERRN 187

Query: 192 VDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
                L    +   +A+P+ A L  ++++  D Y  PE K+I+Y L         +E+  
Sbjct: 188 ATVARLKAEDLATPVAEPTEAQLQTYYDENIDAYTLPETKQITYALLSPDMIADTVEVDE 247

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSD 309
             LQ  Y++ + ++  PE R +E+LV+ N   A  A   L+  G  F  L E++G +L+D
Sbjct: 248 AMLQTAYDERESEFNKPERRLIERLVYGNDDSASAAKAQLEAGGTTFETLVEDRGLALAD 307

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
           I LG   +  +   +  +SIF+ A+ GD    +    G  +  ++ I  +   SF++ + 
Sbjct: 308 IDLGDLDQGALG--AAGESIFA-AETGDVVGPLQSDLGPALFRINGILAAQETSFEDARA 364

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
            + +++   +A   V+     +++ LA G +++++++   +V  ++     AG  +   E
Sbjct: 365 QLRDELAADRARRVVEAQINDIDDLLAGGATLEDLAKETDMVLGNIDWSSEAGDGIAAYE 424

Query: 430 VAAIPYKEQLLFRVFGKDD-PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
           V    ++E    +    DD P        L DG    +++ E    R + L ++   V  
Sbjct: 425 V----FREGA--QAITVDDFP----KIEVLEDGGIFAMRLDEVHAPRPQPLAKITERVSV 474

Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
            W+T  T E + ++A  L+ + + E  +F D+  +L A  LT
Sbjct: 475 GWRTQATLEALRAEAEALLSQITAE-SDFADV--DLEADTLT 513


>gi|85703584|ref|ZP_01034688.1| hypothetical protein ROS217_22622 [Roseovarius sp. 217]
 gi|85672512|gb|EAQ27369.1| hypothetical protein ROS217_22622 [Roseovarius sp. 217]
          Length = 604

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 119/527 (22%), Positives = 233/527 (44%), Gaps = 27/527 (5%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV    L+     F    LS  + SV        VG  ++  +++  + + E+  +  + 
Sbjct: 2   WVLMGLLIAGLAGFGATNLSGTVRSVG------HVGTAEIDLTTYARALQNEIRALEAER 55

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  ++   AR+ G+D  +L  L++ A L+   + +GL      +  +I   P F G D  
Sbjct: 56  GSAISLAEARAAGVDTDVLSRLIARAALEHEADRLGLSIGDANLREQIVEIPAFQGLDGS 115

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F  + +   L + G+NE ++ ++     + T V    + G++     LD    +  E RS
Sbjct: 116 FDREAYRFALDQAGLNETQFEENIRAETASTLVQAAALAGLQTPATYLDTMMTYLAERRS 175

Query: 192 VDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
           + + VL+   +   +  PS   L  + +    ++  PE K+I++           +E+  
Sbjct: 176 LAFAVLDRSALQSGLPVPSEEDLQAYHQANLPSFTTPETKKIAFAWITPAMIIDSVEVEE 235

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
             L+  Y + + ++  PE R VE+L+F + + A  A   + +G     L  E+G  +SD+
Sbjct: 236 AALRDAYAEREAEFNLPERRLVERLIFADTEAATRARARIDEGIALEMLVSERGLEMSDV 295

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG  ++E +   S A+ +FS A+ G+    I  S G  +  V+ I  +    F+E +  
Sbjct: 296 DLGDVAREDLG--SAAEPVFS-AEAGEVVGPIDTSLGPALFRVNAILAAQVTPFEEAEPQ 352

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           + +Q+   +A   ++     +++ LA G ++++++   K  +++L  +D+     +G  +
Sbjct: 353 LRDQLAGDRARRVIEAQIDTVDDLLAGGATLEDVA---KETNMELGSIDWHPGLTEG--M 407

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
           AA     +    V   D P      V L DG    +++      R + LE+V   V   W
Sbjct: 408 AAYDSFREAADAVATGDYP----EVVQLADGGIFALRLDGIDEPRVQPLEDVRDAVLNGW 463

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
           +T  T E + ++    + E  + G +F D+G       LT   I+ M
Sbjct: 464 RTKATVEALKTQVEPQLAEL-RAGASFADLG-------LTATDISNM 502


>gi|56697010|ref|YP_167372.1| hypothetical protein SPO2145 [Ruegeria pomeroyi DSS-3]
 gi|56678747|gb|AAV95413.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 614

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 118/506 (23%), Positives = 227/506 (44%), Gaps = 17/506 (3%)

Query: 13  VAKIFLVVLFVPFLIWGLSD-ALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQK 70
           ++K F+ +L +  LI GL+     ++SG+  TV  VG Q V   ++    ++E+  I  +
Sbjct: 8   LSKTFVWIL-MGLLIAGLAGFGAVNLSGTVRTVAQVGEQTVSVDAYARELQREIRGIEAQ 66

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
            G  +   + R +G+D+ +L  LV+ A LD  +  +G+      +  EI + P F G D 
Sbjct: 67  TGQPLQMSQVRDLGIDQAVLARLVAIAALDNEVAGLGISIGDENLSREIVQIPAFQGVDG 126

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
           KF  + +   L   G++E E+     +  +RT V G  + G+   +   D   +F    R
Sbjct: 127 KFDPEGYRYALDNAGLSEAEFEADLRRESARTLVQGAIMEGLVMPDTYADTLAQFVGARR 186

Query: 191 SVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           S     ++   + + +A P  A +  ++   +D +  P  KR++Y L        ++E+ 
Sbjct: 187 SFTMATVDTGALDSPVAAPDAAQIEAFYADNQDQFMLPRSKRLTYALLTPEMLLDRVELD 246

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLS 308
              ++  YE+ +  Y  PE R VE+LVF +Q  A+ A   ++  G  F  L E +G SL+
Sbjct: 247 EGAVRRLYEERESSYQQPERRLVERLVFADQASAESAMAQVEVGGATFELLVEGRGLSLT 306

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
           D+ +G  + +   D+  A      A+ GD    +    G  +  V+    +   +F+ V+
Sbjct: 307 DVDMGDLTAQ---DLGAAAEAVFAAEVGDVVGPLPSDLGPALFRVNGTLDARITTFESVE 363

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
            ++ +++   +A   ++   + L + LA G +++E+++      ++L  +D+      G 
Sbjct: 364 AELRDELAGERARRLIEAQAESLNDMLAGGATLEELAQD---TDMELGQIDWTEDSSDG- 419

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
            VAA      +   V   D P        L DG+   +++ E +  R   L+     V  
Sbjct: 420 -VAAYAGFRAVATEVAEGDFP----EIGFLEDGAVFALRLDEELEPRPEPLDSARERVIA 474

Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEG 514
            W   +T   +  KA  +    + +G
Sbjct: 475 AWTAAETRRALQDKAASVATGLATDG 500


>gi|89069544|ref|ZP_01156888.1| hypothetical protein OG2516_03173 [Oceanicola granulosus HTCC2516]
 gi|89044879|gb|EAR50969.1| hypothetical protein OG2516_03173 [Oceanicola granulosus HTCC2516]
          Length = 613

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 120/512 (23%), Positives = 228/512 (44%), Gaps = 22/512 (4%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINSWKQELG 65
           K   TWV    L +LF   + +G +     +SG+  T+ SVG +++    +     +++ 
Sbjct: 7   KTVATWV---ILGLLFFGLIGFGAT----GLSGNVRTLGSVGEKEIAIQDYARELNRQIN 59

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
            + Q+ G  +        G+D+ +L +L+S  TLD    ++GL A  GRV  E+  SP F
Sbjct: 60  QLQQQTGQTLTFSEVEQFGIDRMVLSSLISRRTLDNEAAELGLSAGDGRVAAEVRASPAF 119

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
            G D  F  + +   L R G+ E EY     + L+R  +    V  +  S+   D    +
Sbjct: 120 QGLDGSFDREGYKFALDRNGLTEGEYESEIREQLARGLLQRAVVAAIPESDTYADVIAAY 179

Query: 186 YFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
             E RS  +  L+   +   I +P++A L  ++E   D +  PE + I+Y          
Sbjct: 180 LGETRSFVWAELDEDDLAEPIPEPTDAELQAYYEANLDAFTRPETREITYAALTPDMILD 239

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQ 303
            +E+   +LQA Y++  + Y  PE R VE+L+FP++  A  A   ++ G+  F      +
Sbjct: 240 DVEVDRADLQALYDERIDDYVRPERRLVERLIFPDEDAAAAALARIESGESDFDSEVRAR 299

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           G  L+DI LG  +++ +   +  +++F+ A+ GD         G  +  ++ + P+  V 
Sbjct: 300 GLDLADIDLGDVAQDRLG--AAGEAVFA-ARPGDVVGPHPTDLGPALFRMNAVLPAQEVP 356

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
            +E + D+  ++    A  +V+   + + + +A G +++++S R     ++L  + +   
Sbjct: 357 LEEAEADLRVELAADVARRRVQSVGEEIADLIAGGATLEDLSER---TDLELGTLTYTDD 413

Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
              G    A    E    R      P      V L DG    +++ E        LEE  
Sbjct: 414 SRDGLAAYAAFRAEAASAR------PEDFPELVELEDGGIFALRVDEVREPAPIPLEETR 467

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
             V   W+  + +E + ++A ++     + G+
Sbjct: 468 EAVAAAWREAQRSERLLARAEEMAATIEETGR 499


>gi|159044344|ref|YP_001533138.1| putative peptidyl-prolyl cis-trans isomerase [Dinoroseobacter
           shibae DFL 12]
 gi|157912104|gb|ABV93537.1| putative peptidyl-prolyl cis-trans isomerase [Dinoroseobacter
           shibae DFL 12]
          Length = 614

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 124/517 (23%), Positives = 238/517 (46%), Gaps = 35/517 (6%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           I L +L V    +G+S    S  GS+  V SVG   +    +  + + +L    Q+ G  
Sbjct: 12  ILLGLLIVALAGFGIS----SFGGSNARVGSVGDTDITVDEYARALQTQLRAAGQQRGRA 67

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           V+   AR +GLD+++L  LV+ A +D     +G+     RV  +I   P F G    F  
Sbjct: 68  VSMAEARELGLDRQVLAQLVNTAAIDNEAAKLGVSVGDMRVAEQIQTIPAFSGIGGGFDR 127

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP----SNLLLD--QAKR-FYF 187
           + +   L +  ++ +E+        +R  +    +GG+R     +  L D   A+R F +
Sbjct: 128 EAYEFTLQQNNLSPEEFEADVRNEAARNLLQAAVIGGLRAPQAYTGTLYDFIAARRDFTW 187

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
              + D + L        A P++A L  +++     + APE + I+Y+L      + ++ 
Sbjct: 188 AEITPDLVALTQ------AMPTDAELRAFYDANPAAFTAPETREITYVLLSPEMMQDQVS 241

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKS 306
            S ++L+A Y++    Y  PE R ++++VF  + +A EA  +L  G + F +L   +  S
Sbjct: 242 PSEEDLRAAYDRAASVYVQPERRLLDRVVFGTEAQAAEAKAALDSGAQSFEELLAARDLS 301

Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
           L D+ LG  +++ + D ++A+ +F   + G   PV   + G  +  ++    +   +F+E
Sbjct: 302 LEDVDLGEVARDDLDD-AVAEVVFGDQETGIVGPV-RTALGPALFRINAALAAQVTTFEE 359

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP--LVDFAGKD 424
            + ++   +    A   V ++ + L++ LA G +++E+       + D P  L + +   
Sbjct: 360 ARDELTAALAGDAARRAVADEIEALDDLLAGGATLEEL-------AADTPAELGELSLTA 412

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
              + +AA P    L   +   D P        L DG    +++ E +P R    +EV  
Sbjct: 413 TTTEGIAAYPEVRALANTLSEGDFP----EIETLDDGGVFALRLDEVVPPRLLPFDEVRE 468

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
           DV   W+  +  + +S++A + V E  + G++F D G
Sbjct: 469 DVVAGWEAQRLQDALSAEAAR-VAEALRGGESFADQG 504


>gi|254465313|ref|ZP_05078724.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales
           bacterium Y4I]
 gi|206686221|gb|EDZ46703.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales
           bacterium Y4I]
          Length = 613

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 119/516 (23%), Positives = 226/516 (43%), Gaps = 18/516 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   ++K S+T+V  I + +L V    +G   A+   S SS+V  VG ++V   S++   
Sbjct: 1   MAAGMKKLSKTFV-WILMGMLIVGLAGFG---AVNFTSSSSSVAQVGDEEVSIGSYVREL 56

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++E   +  + G  V   +  + G+D+ +L  L+S A LD     +GL      +  E++
Sbjct: 57  QREQRALQAQTGQAVTMAQMSAFGMDRMVLGRLISLAALDHESRQLGLSIGDDNLIEELS 116

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F      F  + +   L   G+ EKE+ D   +  +RT V    + G +    L +
Sbjct: 117 AIDAFKNVSGGFDREAYRFALRNAGLTEKEFEDDLRREAARTMVQNAMLSGTKMPATLTE 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
               F    RS  Y+ LN   +   A+ PS+A L  ++E  +D +  PE K I+Y     
Sbjct: 177 TLTSFIGARRSFSYVQLNAADIALTAEAPSDADLQAFYEANQDQFMLPETKVITYAALRP 236

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQ 298
                +IE+   +LQ  +E   ++Y  PE R VE+LVF ++  A  A   L+  G  F  
Sbjct: 237 STLLDEIEVDEAQLQRLFEDRADQYQVPERRLVERLVFGSEDAAASAKAQLETGGATFES 296

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           L E +G +L D  +G  +   + D+  A +     + GD    +    G  +  V+    
Sbjct: 297 LVEARGLTLQDTDMGDVA---MGDLGAAGTEVFATQVGDVAGPLPSDLGPALYRVNGRLE 353

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
           +   +F++ K ++  ++   +A   V+   + +++ LA G +++E++       ++L  +
Sbjct: 354 AQITTFEDAKPELIEELASDRARRLVESQAEGIDDMLAGGATLEELATES---GLELAQI 410

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
           ++      G  +AA          V  +D P        L DGS   +++ + +P R   
Sbjct: 411 NWTEDTSDG--IAAYEAFRTAAAAVTAEDFP----EAGFLEDGSLFALRLDDVLPERPEP 464

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
             +    V   W+  + A+ +  +   ++ +  + G
Sbjct: 465 FADAKDKVLAAWQADRLAKALKDQGEAVLAQAEQAG 500


>gi|110680386|ref|YP_683393.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456502|gb|ABG32707.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter
           denitrificans OCh 114]
          Length = 612

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 109/482 (22%), Positives = 221/482 (45%), Gaps = 16/482 (3%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
           T+ + G + +P   +    +QE+  + Q+   V+  ++A+ +GLD+ +L  LV+  +LD 
Sbjct: 37  TIGTAGDKPIPVDDYFRQLQQEIRAVEQQTREVLPFQQAQQMGLDRAVLQRLVATRSLDH 96

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
               +GL      +   I     F G + +F  + +   L + G++E E+     + ++R
Sbjct: 97  ETSQLGLSIGDEELRRRILDISAFQGINGEFDREGYRFALEQTGLSEAEFETQLREEVAR 156

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKY 220
           T V G  +GG+      +D    +  E RS  + +L+   +   +  P +AVL   ++  
Sbjct: 157 TIVQGAVLGGIAMPETYVDTLVNYIGEQRSFTWSLLDASDLATPLGAPDDAVLRAHYDDN 216

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
            D +  PE K+I+Y           +E+  + L+  Y +   ++  PE R VE+L F ++
Sbjct: 217 IDVFTLPETKQITYAWLTPDMLLDSVEVDEEALREAYAQQSAEFNQPERRLVERLAFLDR 276

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           + A +A  +L  G  F  L   +G +L DI LG  S+  + +      +F+ A  G    
Sbjct: 277 QSAQQAADALAAGDSFDDLVRGRGLALEDIDLGDVSEAELGEAGA--GVFA-ADVGAVVG 333

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
               + G  +  V+ +  +    F++    +  Q+   +AS  V    +  ++ LA G +
Sbjct: 334 PFPSTLGPALFRVNAVLAAQETPFEDAIDLLRPQLAADRASRLVAAQAESFDDLLAAGAT 393

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
           +++++    +V   +  +D+  +    +E+AA P   Q    V  +D P       +L D
Sbjct: 394 LEDLASETDMV---VAQIDWTAQST--EEIAAYPTFRQAAAAVGPRDFP----EIASLDD 444

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK-ANQLVLEYSKEGKNFRD 519
           G    +++   +P R    +E+  ++   W+  +TA+ ++ + A Q+ L   + G +F D
Sbjct: 445 GGLFALRLDTVLPPRPAPFDEIREEIIAHWEAAETAKRLAEQVAAQVGL--LENGSSFAD 502

Query: 520 IG 521
           +G
Sbjct: 503 LG 504


>gi|332532266|ref|ZP_08408147.1| peptidyl-prolyl cis-trans isomerase PpiD [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038364|gb|EGI74809.1| peptidyl-prolyl cis-trans isomerase PpiD [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 633

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 151/626 (24%), Positives = 273/626 (43%), Gaps = 80/626 (12%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFI 57
           MLE IR+ S+  VAKI L  + + F + G+   L    G +T   V  V   K+  + F 
Sbjct: 1   MLEKIREGSQGPVAKIILGAVILSFALAGIGSYL----GQTTEQPVAEVNGIKISQTDFN 56

Query: 58  NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +++ E   + Q+ G     + ++      + + ++D LV      Q   D+GL      
Sbjct: 57  RAYQNERSRLEQQFGEYFTQIAADPNYMAQIRQGVVDRLVQQELQSQLAADLGLRVSDES 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V   I   P F   + KF++D ++  + +       + ++  K ++R+ VV    G    
Sbjct: 117 VRKTILELPYFQIGE-KFNNDRYLQVIRQMNFQPDAFREYLRKDMTRSQVVSAVAGTDFA 175

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
               L  A     + RS+DY+V+N   + A  + S+  ++ +++     + +PE   +SY
Sbjct: 176 LESELKSAIALQQQTRSIDYVVVNKEALAANVEVSDQEVSDYYDLNASQFLSPELISVSY 235

Query: 235 ILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------- 286
           I  ++   +  +E +++D+++A YE+NK +Y  PE R V  ++  N ++ D A       
Sbjct: 236 I--ELKAADINVESVTDDDVKAYYEQNKAQYVEPEKRRVSHILIDNSEDDDAAKEKANAL 293

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY------IPDVSLADSIFSLAKKGDFTP 340
              L++G  F +LA+    S  DI  G    +       + D +  D+ F+L  KGD + 
Sbjct: 294 HAQLEQGADFAELAQ---SSSDDIVSGEMGGDLEWIERDVMDPAFEDAAFALENKGDISD 350

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
           V+   FGY I  +++I+P    ++ +VK D+  ++   + +EK+   Y++  E  AL   
Sbjct: 351 VVTSEFGYHIIKLTDIQPQQVKAYDDVKADLRAEL---EQAEKIDAFYEKQTEMGALAF- 406

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA--- 457
             EIS R         L D A       EVA +  K   L  +    +PL+    V    
Sbjct: 407 --EISDR---------LDDAA-------EVAEVEVKSTPLLALNALPEPLNSPAVVTALT 448

Query: 458 ---------------LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                          L D   + V+I E   A  + L+EV  ++K      K++E    K
Sbjct: 449 SVDLLEDKVNSEVIELGDEHAIIVRINEHKAAATKPLDEVSEEIKARLVNEKSSELAKEK 508

Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF--SGPVE-- 558
           A  L  E  + GK+  D+        LT  Q  ++  ++       ++Q F  + P +  
Sbjct: 509 ARSLFAEV-QAGKSLNDVANEQS---LTLRQEAKLTRQSYTVSPAIVTQAFKMAHPADSA 564

Query: 559 MVKCFPIENGLSYVVF--KVTNSKVG 582
           +V    + NG + +V    VT+++V 
Sbjct: 565 VVDLVNLNNGDAAIVALKSVTDAQVA 590


>gi|83951843|ref|ZP_00960575.1| hypothetical protein ISM_14810 [Roseovarius nubinhibens ISM]
 gi|83836849|gb|EAP76146.1| hypothetical protein ISM_14810 [Roseovarius nubinhibens ISM]
          Length = 609

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 110/489 (22%), Positives = 223/489 (45%), Gaps = 16/489 (3%)

Query: 36  SVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           ++SG+  +V SVG  K+  + +  + + E+  +  + G  ++  +AR +GLD+ +L  LV
Sbjct: 24  NLSGNVQSVGSVGDTKIDINDYARTLQNEIRALEAQRGERLSFAQARELGLDQAVLGRLV 83

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
           +   L+   + IG+      +  EI     F G D KF    +   L + G+NE  + + 
Sbjct: 84  TTTALEDETQRIGISIGDANLRDEILNIQAFQGLDGKFDRQAYEFALQQAGLNETRFEED 143

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVL 213
                +RT + G  V G+R      D    +  E R + + VL    +   + +P+   L
Sbjct: 144 MRAETARTLLQGAVVAGVRAPEAYGDTLINYLGERRDISWAVLARADLQTGLPEPTEEDL 203

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
             + E ++  +  PE K I+Y           +E+  D L+A Y++   +Y  PE R VE
Sbjct: 204 AAYHEAHQAEFTTPETKAITYAWLTPDMILDTVEVDEDALRAAYDERSAEYNQPERRLVE 263

Query: 274 QLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
           +LVF +   A +A   ++ G+  F  L   +   LSD+ +G  ++  +   +  D++F+ 
Sbjct: 264 RLVFLDSAAASDALARIESGEASFEDLVAARDLELSDVDIGDVTRAQLG--AAGDTVFA- 320

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           A+ GD    +    G  +  V+ +  +  V F+E +  + +++   +A   ++     ++
Sbjct: 321 AEAGDVVGPVDTDLGPALFRVNGVLAAQVVPFEEAEPMLRDELAGDRARRVIESSMDNID 380

Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
           + LA G +++ +++      ++L  +D+  +  +G  +       Q    V   D P   
Sbjct: 381 DLLAGGATIEGLAQE---TDLELGKIDWHPEVTEG--IGGYESFRQAAAAVTTDDYP--- 432

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
              + L DG    +++ E+I  R + +EEV   + + W      E + S++   +   S+
Sbjct: 433 -QVIELDDGGLFAMRLDETIAPRVQPVEEVRDALAEAWTRQTIVEALRSQSEADIAALSQ 491

Query: 513 EGKNFRDIG 521
            G +F ++G
Sbjct: 492 -GTSFEELG 499


>gi|84686955|ref|ZP_01014838.1| hypothetical protein 1099457000244_RB2654_01575 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664929|gb|EAQ11410.1| hypothetical protein RB2654_01575 [Rhodobacterales bacterium
           HTCC2654]
          Length = 613

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 135/616 (21%), Positives = 271/616 (43%), Gaps = 28/616 (4%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +++++  V   + G     F  SG S +  VG  ++  S++      E     Q+ G  +
Sbjct: 10  VWIIMALVMVGLIGFGSVNFGGSGQS-IGKVGDTEIDASAYFRELNAEFQGWQQQTGQNL 68

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
               A+ +GLD+++L  +V+   ++   + +GL      +   +   P F G + +F  D
Sbjct: 69  TMAEAQEIGLDQRVLSRVVAITAVENETDRLGLSVGDQNLASRVTEIPAFQGPNGQFDRD 128

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
            +   L + G+  +E+ +     ++RT + G     +   ++  D    +  E R   + 
Sbjct: 129 TYDFVLEQSGLTAREFEETLRLEVARTILAGAVTSDLEMPDVYTDTLFGWARETRDFTWA 188

Query: 196 VLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
            +    +   + +P+ A L  ++E   D++  PE ++I+Y      +   +I + + +LQ
Sbjct: 189 PVTRSALEEPLPEPTEADLEAYYEANPDDFTTPETRQITYGWLKPEDVLDEIPMDDTQLQ 248

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG 313
           A Y++  +++  PE R VE+LVF +  EA  A   ++ G+  F Q  + +G SLSD+ +G
Sbjct: 249 ALYDQRIDEFQVPERRLVERLVFGSADEAQAAADRIEAGETTFDQEVQARGLSLSDVDMG 308

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
             ++  +      + IF+L   G   P I    G  +  ++ I  +   SF+EV+  +  
Sbjct: 309 DVTRRALGQA--GEPIFALDAPGVVGP-IETDLGPALFRMNAILSAQETSFEEVRDQLFE 365

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
           +     A   V+     ++E +A G +++E++  E ++++D   + +   +  G   A  
Sbjct: 366 EYAADAARRLVRTRATEIDEMMAGGATLEELA-AEGLITVD--TIGYFDGNQDGI-AAYA 421

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
           P++E         D P        L DGS   +++ E  P   + L+EV   V   W+  
Sbjct: 422 PFREA-ASEASESDFP----EVTELEDGSVFALRLDEITPPALQPLDEVRDAVVAGWEAQ 476

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKN--LGASLLTTNQINRMDN---ENKFFGYDG 548
              E + ++A  L+ ++    +    +G    L   +  T+ I    +   E  F   +G
Sbjct: 477 TLTEALVARAEALIPQFESGAEAPSTVGLTEVLEEDIARTSFIQGTPSTMIETAFEMEEG 536

Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYLTQMMNKDLLDSVI 607
             QV SG  ++V       GL+ V     +      QE K  F + ++Q +  D+ D+  
Sbjct: 537 TWQVVSGDGQVVVL-----GLTDV--NAPDQDSAEAQEIKTTFGARVSQQIAADVQDAFA 589

Query: 608 AYLKSQYSVTVHDNLI 623
           A L++   VT+   +I
Sbjct: 590 AALEADAGVTLDQAMI 605


>gi|114765314|ref|ZP_01444431.1| hypothetical protein 1100011001355_R2601_24744 [Pelagibaca
           bermudensis HTCC2601]
 gi|114542294|gb|EAU45323.1| hypothetical protein R2601_24744 [Roseovarius sp. HTCC2601]
          Length = 615

 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 184/395 (46%), Gaps = 14/395 (3%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
            L+  FV F  +G  +  FS  G   + SVG   +  S +  + + EL     + G  + 
Sbjct: 16  ILIASFVGFGAFGTVN--FS-GGVGNIGSVGDTTISTSDYARALQSELRAQQAQTGRAIT 72

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
            E+AR  GL  ++L  +V+ A L+     IGL     RV  +++    F+G D  F    
Sbjct: 73  VEQARQSGLTDQVLAQVVTNAALEDETTRIGLSVGDERVAEDLSNVEAFNGPDGNFDRSA 132

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           +   L   G+NE E+ ++  +  +R+ +    + G    +  +D    +  E+R+  +  
Sbjct: 133 YAYALQNAGLNEGEFEENLRRDAARSILSAAVISGTTLPDAYVDTLLEYIGESRAFTWAT 192

Query: 197 LN----NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
           L     N  +P    PS   L  W++   D +  PE K I++           +E+  D 
Sbjct: 193 LERDALNTGLPV---PSEDELQAWYDDNIDLFTLPETKVITFAWLTPDMIVDTVEVEEDA 249

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDIS 311
           L+A Y++  E++  PE R +E+LVF  + EA  A   +   +  F  + +E+G +L D  
Sbjct: 250 LRAAYDERAEEFNLPERRLIERLVFSTEAEAQAAADRIASVEADFETVVDERGLALIDTD 309

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           +G  +++ + D   A+ +FS A+ GD       SFG  +  V+ + P+    ++E   D+
Sbjct: 310 MGDVTRDTLGDA--AEPVFS-AEVGDVVGPAPSSFGPALYRVNGVLPAQETPYEEAVPDL 366

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
            + + + +A   ++     +++ LA G +++E+++
Sbjct: 367 RDALVLDRARRVIEGMASSIDDELAGGATLEELAQ 401


>gi|330994544|ref|ZP_08318468.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter sp.
           SXCC-1]
 gi|329758398|gb|EGG74918.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter sp.
           SXCC-1]
          Length = 665

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/490 (22%), Positives = 217/490 (44%), Gaps = 13/490 (2%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS--VGRQKVPFSSFINSWKQELGMIS 68
           +WV +I   + F+ F+ +G+ D L ++      V+  VG + +   S+ N+ + E+  ++
Sbjct: 33  SWVGRIVAGLFFLAFIGFGVGDVLMNIGTERADVAARVGSRPILVQSYQNALQSEMPQVA 92

Query: 69  QKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           Q +     ++   A    + +++L  LV  A + +  +  GL      V  EI   P F 
Sbjct: 93  QSMHLSDPAQIPPATREQVARQVLQRLVLQAEIAEAADRHGLIVPDSVVRDEIFSIPAFR 152

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
           G + +F   +F  RL R G+ E   I+   +  +   ++     G    ++++ +   F 
Sbjct: 153 GTNGQFDRALFNDRLHRTGMTEGRLIELVRQEQASRVLLEPIRDGATVPDVMVRRLFDFE 212

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            + R++D + +        A P+ A L ++   +   + APEY+    ++       + +
Sbjct: 213 AQTRTIDLVRVPFDSQQVTATPTPAQLARYHANHPWEFTAPEYRHARVVVLSADTIGRML 272

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           +I++ ELQ  Y+   + + +PE R+V+ +  P Q  A            + Q+ ++ G+ 
Sbjct: 273 DITDAELQKSYQDQAQTFSAPERRSVQIVTVPTQDRATALRARWTDAGAWAQVQKDAGRD 332

Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
            + + L    +  IP   L  +IF+        PV     G+V+  V+ + P+ T  F +
Sbjct: 333 AAAVELPGMKQTDIPSADLGRAIFAAPVDVTQGPV-KSEGGWVVFRVTTLTPAHTTPFAD 391

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
           VK+ + +Q+  T+A   + +  ++L++ +A G  +D I      V++   L D +G   +
Sbjct: 392 VKQALHDQIAHTRAQALLADRVQKLQDAIA-GGGLDSIPADLGAVAVSGDL-DASGNTHE 449

Query: 427 GKEVAAIP----YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
           G   A IP     ++ ++ RVF +    S    V  PDG++  V +    P     L E 
Sbjct: 450 GTP-APIPGSDAVRQAVIARVFSQAKGASP-VLVQGPDGAWYAVSVDGVTPGHALDLAEA 507

Query: 483 LTDVKKDWKT 492
              V   W+ 
Sbjct: 508 GPRVAAAWQA 517


>gi|238759258|ref|ZP_04620425.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia aldovae ATCC 35236]
 gi|238702545|gb|EEP95095.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia aldovae ATCC 35236]
          Length = 628

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 190/394 (48%), Gaps = 26/394 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+   V KI L ++ + F++ G+   L  + GS+   + V  Q +  +    +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDYAAKVNGQDISRAQLEQA 58

Query: 60  WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            + E G + Q++G     + +     + L +++L  LV+   LDQ+ + +GL A   +V 
Sbjct: 59  MQSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAQKLGLSASDAQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174
             I ++P F   DNKF ++ ++  + R G   +++     + L    ++  F   G + P
Sbjct: 119 EAIRQAPYFQ-TDNKFDNNKYLELVNRMGYTPEQFAQLQRQQLINQQLLQAFGDTGFVLP 177

Query: 175 ------SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
                 S L+L Q        R V    ++ + + A    ++  L  ++E+ K+++ APE
Sbjct: 178 IEAQAMSELILQQ--------RDVRLATIDLKALQAQQKVTDEELKAYYEQNKNSFIAPE 229

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
             ++S+I  D    + KI ++ +++ A YE++K  Y  PE R    + F  + EA  A  
Sbjct: 230 QMKVSFIAMDAAAMQDKITVTEEDIAAYYEQHKSSYTQPERRNYSVIQFKTEAEAKAALD 289

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSF 346
            LKKG  F  +A+E+   +     G       P+ + AD +   +L +KG  + V+  S 
Sbjct: 290 ELKKGADFAAMAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSV 348

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           GY+I  +++IKP       EV + +A Q++  KA
Sbjct: 349 GYLIVRLNDIKPELVKPLSEVHEALAKQVKQEKA 382


>gi|323495052|ref|ZP_08100141.1| peptidyl-prolyl cis-trans isomerase D [Vibrio brasiliensis LMG
           20546]
 gi|323310709|gb|EGA63884.1| peptidyl-prolyl cis-trans isomerase D [Vibrio brasiliensis LMG
           20546]
          Length = 619

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 127/547 (23%), Positives = 253/547 (46%), Gaps = 23/547 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           M++ +R+   +   KI L ++ + F+  G+    + V GS+ +   VG  ++    F  +
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGS--YIVGGSNNSAAKVGNVEIGRGEFEQA 58

Query: 60  WKQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E   +  ++G +  N  ++ +      K +LD +V+   L+Q  E +GL     +V 
Sbjct: 59  YQNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLLEQHAESLGLRVSDSQVR 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   D KF  +++ + L R G + + + ++  + L R  ++    G      
Sbjct: 119 TLILEMPQFQ-VDGKFDQEIYQTALRRAGFSAESFAEYLRRDLVRNQLMTAIQGSDFALP 177

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             ++   +   + R +  + L+     A A+ S   ++ ++++  + Y  PE  +++Y+ 
Sbjct: 178 GEVEAQSKLLTQTRDIKKVTLSLADFAAKAELSEQEISDYYQQNPERYTRPEQVKVAYVE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGK 294
               + ++ IEIS+++ +  Y+++ +KY S E R V  ++    +Q +A      L  G 
Sbjct: 238 LSAQQLKENIEISDEQAEKYYQEHIDKYSSEEQRRVSHILIEGDDQAKAQAILDELNAGA 297

Query: 295 KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            F  LAEE+    G +    SLG   ++ + D S  ++ F+L K G+ T ++   FGY I
Sbjct: 298 DFATLAEEKSDDFGSASEGGSLGWIERD-VMDPSFEEAAFALTKVGETTGLVKSDFGYHI 356

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRREK 409
             +  +K S    +QEV  +I  +++  +A ++  E    LE+       S+D+ +   K
Sbjct: 357 IKLDELKDSVAKPYQEVAAEIKQELKDQQAIDQYYELQSELEKVAFEYPDSLDDAA---K 413

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
            ++ ++   DF  + V   E+   P   Q +     K+D L+ +     P+   + V+++
Sbjct: 414 AINAEIHTTDFISQ-VDAPELLKTPAVLQAIVSPEVKEDGLNSEVIEVAPE-HVIVVRVE 471

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +S       LE+V +DV K    VK  +     A  LV E  KEGK  +D+    G +  
Sbjct: 472 DSRDETVLPLEQVRSDVTKALANVKGEQTAIELAQNLVAEL-KEGK--QDLLSESGLAFG 528

Query: 530 TTNQINR 536
            T  ++R
Sbjct: 529 ETETLDR 535


>gi|163736555|ref|ZP_02143974.1| putative peptidyl-prolyl cis-trans isomerse D [Phaeobacter
           gallaeciensis BS107]
 gi|161390425|gb|EDQ14775.1| putative peptidyl-prolyl cis-trans isomerse D [Phaeobacter
           gallaeciensis BS107]
          Length = 613

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 115/493 (23%), Positives = 215/493 (43%), Gaps = 16/493 (3%)

Query: 19  VVLFVPFLIWGLSD-ALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
           V + +  LI GL+     + +GS S+V  VG Q+V    +    ++E   +  + G  V 
Sbjct: 13  VWILMGMLIIGLAGFGAVNFTGSVSSVAVVGDQEVSVDDYARELQREQRALEAQTGQRVP 72

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
             +  ++GLD+ +L  L++ A LDQ   D+GL      ++ EI+R P F      F+ D 
Sbjct: 73  IAQMTALGLDRVVLGRLIAIAALDQESSDLGLSIGDQNLFDEISRIPAFQDGTGAFNRDT 132

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           +   L   G+ E  +     +  +RT V G  + G    + L D    +    RS D++ 
Sbjct: 133 YQYALDNIGLTEAAFEADLRRESARTLVQGAIMAGTEMPDTLRDTLTSYVGARRSFDWLT 192

Query: 197 LNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
           ++   +   A +PS   L  +++   D +  P  K I+Y          +IEI    L+ 
Sbjct: 193 VSEESIALTAVEPSEDELRTFYDANIDQFTLPRTKVITYAALRPDALVDEIEIDAAALEQ 252

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGS 314
            +     +Y  PE R VE+LVF N+  AD A   L   G  F  L  ++G SL D+ LG 
Sbjct: 253 LFNDRSAEYQVPERRLVERLVFANRDAADSAKAQLDINGTTFDALVADRGLSLQDVDLGD 312

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
            +   + D++ A      A+ G+    +    G  +  ++    +   S ++VK ++  +
Sbjct: 313 VT---MGDLASAGQDVFAAQVGNVVGPLDSDLGPALFRINGRLEARVTSLEDVKDELRAE 369

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
           +   +A   ++   + + + LA G +++E+        ++L  +D+      G  +AA  
Sbjct: 370 LATDRARRLIETRSEEINDMLAGGATLEELIDEP---GMELGKIDWHNGSTDG--IAAYD 424

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
              Q    V  +D P        L DGS   +++ E +  R     +    ++  W++ +
Sbjct: 425 GFRQAASAVTAEDFP----EVAFLEDGSLFAIRLDEELEPRPEPFADAQDKLRAAWQSKR 480

Query: 495 TAEEVSSKANQLV 507
             + + ++A +L 
Sbjct: 481 LQDALEAEAERLA 493


>gi|86138848|ref|ZP_01057420.1| hypothetical protein MED193_03732 [Roseobacter sp. MED193]
 gi|85824495|gb|EAQ44698.1| hypothetical protein MED193_03732 [Roseobacter sp. MED193]
          Length = 614

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/512 (22%), Positives = 223/512 (43%), Gaps = 18/512 (3%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           I+K S T+V  I + +L V    +G  +  FS S  S V  VG ++V    ++   ++E 
Sbjct: 5   IKKLSNTFV-WILMGLLIVGLAGFGAVN--FS-SSMSAVALVGEEEVTVDEYLREMQREQ 60

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             +  + G  ++  +  + GLD+ +L  L+S A +D  ++++G+      +  E+A  P 
Sbjct: 61  RALQAQGGQALSLSQMAAFGLDQAVLGRLISIAAIDNEVKNLGISVGDDNLRQELAEIPA 120

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F      F    +   L    +NE ++     +  +RT V G  V G +  + L      
Sbjct: 121 FQDPSGNFDRQTYSFALQNANLNESDFEADLRRESARTLVQGAIVVGAKMPDTLTKTLTS 180

Query: 185 FYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
           +    RS  Y+  +   +  I   P +AVL  ++E   D++  PE KRI+Y         
Sbjct: 181 YIGARRSFSYVPFSPDQISLIQVVPEDAVLMAFYEANADDFTLPETKRITYARLSPDMIL 240

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEE 302
             +E+  + L+  Y    E+Y   E R VE+LVF +   A +A   L   G  F  L E 
Sbjct: 241 DTVEVDEEALRTLYSDRSEQYQIAERRLVERLVFADDTSAADAKAQLDVAGTTFEALVEG 300

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +G +L DI LG  ++ ++ D +        A+ G     +    G  +  V+    +   
Sbjct: 301 RGLALQDIDLGDVTQSFLGDAA---EAVFAAEVGTIVGPLPSDLGPALYRVNGQLEARHT 357

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
           +F++ + ++ +++   +A   +++  + + + LA G ++++++        D+ +     
Sbjct: 358 TFEQAEPELRDELAADRARRLIEQQAEEINDLLAGGATLEDLANES-----DMEVASLGW 412

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
               G+ + A          V  +D P ++     L DGS   +++ E +P R    E+ 
Sbjct: 413 SGETGEGITAYEGFRTAASLVTVEDFPTAE----FLGDGSLFALRLDEILPERPEAFEDA 468

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
              V   W+  + A  + ++A  L+   ++ G
Sbjct: 469 KAKVLAAWEADRVATALQAEAEALLATVTQTG 500


>gi|163742798|ref|ZP_02150183.1| hypothetical protein RG210_15675 [Phaeobacter gallaeciensis 2.10]
 gi|161384053|gb|EDQ08437.1| hypothetical protein RG210_15675 [Phaeobacter gallaeciensis 2.10]
          Length = 613

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 115/493 (23%), Positives = 214/493 (43%), Gaps = 16/493 (3%)

Query: 19  VVLFVPFLIWGLSD-ALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
           V + +  LI GL+     + +GS S+V  VG Q+V    +    ++E   +  + G  V 
Sbjct: 13  VWILMGMLIIGLAGFGAVNFTGSVSSVAVVGDQEVSVDDYARELQREQRALEAQTGQRVP 72

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
             +  ++GLD+ +L  L++ A LDQ   D+GL      ++ EI+R P F      F+ D 
Sbjct: 73  IAQMTALGLDRVVLGRLIAIAALDQESSDLGLSIGDQNLFDEISRIPAFQDGTGAFNRDT 132

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           +   L   G+ E  +     +  +RT V G  + G    + L D    +    RS D++ 
Sbjct: 133 YQYALDNIGLTEAAFEADLRRESARTLVQGAIMAGTEMPDTLRDTLTSYVGARRSFDWLT 192

Query: 197 LNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
           ++   +     +PS   L  +++   D +  P  K I+Y          +IEI    L+ 
Sbjct: 193 VSEDSIALTEVEPSEDELRAFYDANIDQFTLPRTKVITYAALRPDALVDEIEIDAAALEQ 252

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGS 314
            +     +Y  PE R VE+LVF N+  AD A   L   G  F  L  ++G SL D+ LG 
Sbjct: 253 LFNDRSAEYQVPERRLVERLVFANRDAADSAKAQLDINGTTFDALVADRGLSLQDVDLGD 312

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
            +   + D++ A      A+ GD    +    G  +  ++    +   S ++VK ++  +
Sbjct: 313 VT---MGDLASAGQDVFAAQVGDVVGPLDSDLGPALFRINGRLEARVTSLEDVKDELRAE 369

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
           +   +A   ++   + + + LA G +++E+        ++L  +D+      G  +AA  
Sbjct: 370 LATDRARRLIETRSEEINDMLAGGATLEELIDEP---GMELGKIDWHNGSTDG--IAAYD 424

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
              Q    V  +D P        L DGS   +++ E +  R     +    ++  W++ +
Sbjct: 425 GFRQAASAVTAEDFP----EVAFLEDGSLFAIRLDEELEPRPEPFADAQDKLRAAWQSKR 480

Query: 495 TAEEVSSKANQLV 507
             + + ++A +L 
Sbjct: 481 LQDALEAEAERLA 493


>gi|114771096|ref|ZP_01448536.1| hypothetical protein OM2255_03322 [alpha proteobacterium HTCC2255]
 gi|114548378|gb|EAU51264.1| hypothetical protein OM2255_03322 [alpha proteobacterium HTCC2255]
          Length = 624

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 142/606 (23%), Positives = 281/606 (46%), Gaps = 43/606 (7%)

Query: 37  VSGS--STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           V GS  S++  VG + +P +S+  S +  +  IS++IG  + S+   + GL  + L+N+V
Sbjct: 34  VDGSRISSIGKVGEEPIPVTSYAQSLRNTIQNISRQIGRQLTSQEISAYGLQSEALENVV 93

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
           S A L    + + +      V  EI  +P F   D KF  + +   L   G++ KEY   
Sbjct: 94  SSAALSNEAKRLKISVGDDLVAEEIIATPTFTSVDGKFDKEAYEFALENSGLDTKEYELQ 153

Query: 155 YTKMLSRTDVVGMFVGGMR-PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAV 212
             K ++R+ + G    G + PS+  +   K F  E RS D+  ++ + +   A +P+   
Sbjct: 154 TRKAIARSLIEGAVASGTKTPSSHAMTLIK-FAREERSFDWASIDKKLLSTQAINPTIDQ 212

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
           L   ++K    Y AP  ++++Y+L        +I +S  EL+ EY+   +++  P  R +
Sbjct: 213 LKAHYDKNNILYTAPLSRKLTYVLLSPEMLADRIVVSQSELKDEYKSQPDRFNKPARRII 272

Query: 273 EQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
           ++++F + K A      L K +  F ++AE++G + +DI LG   K  + D  + D +F+
Sbjct: 273 DRIIFDSVKTARTVKDQLDKEEVSFTKVAEDRGLTQTDIDLGDIEKGQL-DKDIDDLLFN 331

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            ++ G + P I  + G  +  ++ I      SF +  +++  +    ++ + + E    +
Sbjct: 332 ASEVGIYGP-IDTNLGPALFQINAIIDPQNTSFADAAEELTAEYVSIESRKLINEMITDI 390

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP-YKEQLLFRVFGKDDPL 450
           ++ LA G +++EI++     +++L  + +      G  +AA   ++ + L    G    L
Sbjct: 391 DDLLAQGLTLEEIAKE---TAMELEKISYDSTTENG--IAAYDGFRAEALKVKIGGFPEL 445

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
            +     L DG    +++ + I    R  E V   V  DW   +  + +   A+ L+++ 
Sbjct: 446 RE-----LSDGGVFALRLDDLIEPALRPFETVKDQVATDWSASEDKKSLLKLADTLIIKL 500

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI-----SQVFSGPVEMVKCFPI 565
              G+ F  +  NL A   + + I R    NK+   DGI      ++FS   +  K   I
Sbjct: 501 DN-GETFESL--NLNAE--SVSSITR----NKYI--DGIPAQLLEELFSN--KTGKTSKI 547

Query: 566 ENGLSYVVFKVT-----NSKVGPVQEKDKFISY-LTQMMNKDLLDSVIAYLKSQYSVTVH 619
           +NG + ++ ++      NS+    +E    +   L+  +  DLL    + LK +  V ++
Sbjct: 548 DNGDTVLLARLNDISEFNSETDESKELLSQVGIQLSNQVTGDLLRLFASALKDRDGVILN 607

Query: 620 DNLIQR 625
            N + +
Sbjct: 608 QNAVNQ 613


>gi|315127185|ref|YP_004069188.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D)
           [Pseudoalteromonas sp. SM9913]
 gi|315015699|gb|ADT69037.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D)
           [Pseudoalteromonas sp. SM9913]
          Length = 633

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 129/567 (22%), Positives = 243/567 (42%), Gaps = 57/567 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  VAK+ L  + + F + G+   L   +    V  V   K+  + F  ++
Sbjct: 1   MLEKIREGSQGPVAKVILGAVILSFALAGIGSYLGQTT-EQPVAEVNGIKISQTEFSRAF 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q+ G     + ++      + + ++D LV      Q   ++GL      +  
Sbjct: 60  QNERSRLEQQFGEYFTQIAADPTYMAQIRQGVIDRLVQQELQSQLATELGLRVSDESIRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D +F++D ++  + +       + ++    ++R+ +V    G       
Sbjct: 120 TILELPYFKIGD-QFNNDRYLQVIRQMNFQPDSFREYLRDDMTRSQLVSAVAGTDFALQN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L  A     + RS+DY+V++ + + A  D ++  +  ++E     + +PE   ++YI  
Sbjct: 179 ELKSAIALQQQTRSIDYLVIDKQAMQADVDVTDQEVADYYELNAGQFLSPELISVNYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------FQSL 290
           D  + +    +S D+++A YE++K +Y  PE R V  ++  N ++ D A          L
Sbjct: 239 DADDIDVA-SVSEDDVKAYYEQSKAQYVEPEKRRVSHILIDNSEDDDAAKAKAESLLAQL 297

Query: 291 KKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             G  F QLAE     +    +G    + +  + + +  D+ F+L  KGD++ V+   FG
Sbjct: 298 NAGADFAQLAESSSDDIVSAEMGGDLEWIERDVMEPAFEDAAFALQNKGDYSDVVASEFG 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y I  +++I+      +  VK D+  ++   + +EKV   Y++  E  AL     EIS R
Sbjct: 358 YHIIKLTDIQSQQVKPYDAVKADLRAEL---EQAEKVDAFYEKQTEMGALAF---EISDR 411

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS---------------- 451
                    L D A  +V G EV + P     L  +    +PL+                
Sbjct: 412 ---------LDDAA--EVAGVEVQSTP-----LLALSALPEPLNNPAVITALSSVELLED 455

Query: 452 --KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
                 + L +   + V++ E  PA  + L EV   +K   +  K ++    KA  L  +
Sbjct: 456 KVNSEVIELGNEHVIVVRVNEHQPAATKALSEVSEQIKTRLENEKASDLAKEKARTLFAQ 515

Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINR 536
             K+GK+  D+      S+   +Q+ R
Sbjct: 516 I-KDGKSLNDVAAEQSLSVRQESQLTR 541


>gi|149203720|ref|ZP_01880689.1| hypothetical protein RTM1035_06628 [Roseovarius sp. TM1035]
 gi|149142837|gb|EDM30879.1| hypothetical protein RTM1035_06628 [Roseovarius sp. TM1035]
          Length = 614

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/536 (20%), Positives = 229/536 (42%), Gaps = 45/536 (8%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV    L+V    F    LS  + S+        VG  ++  +++  + + E+  +  + 
Sbjct: 12  WVLMGLLIVGLAGFGATNLSGNVRSIG------HVGTAEIDVTTYARALQNEIRALEAER 65

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  ++   AR+ G+D  +L  LV+ A L+   + +GL      +  +I   P F G D  
Sbjct: 66  GSAMSFAEARAAGVDTDVLGRLVARAALEHEADRLGLSIGDENLREQILDIPSFQGLDGS 125

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F  + +   L + G+NE ++ ++     + T V    + G++  +  +D    +  E RS
Sbjct: 126 FDREAYRFALDQAGLNESQFEENIRAETASTLVQAAALAGLQTPSTYMDTMMTYLAERRS 185

Query: 192 VDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
           + + VL+   +   +  PS   L  + + +  ++  PE K I++           +E+  
Sbjct: 186 LAFAVLDRAALQSGLPVPSEDDLKTYHQGHLPDFTTPETKTITFAWVTPAMILDSVEVDE 245

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
             L+  Y + + ++  PE R VE+LVF +   A  A   +  G     L  E+G  ++DI
Sbjct: 246 AALREAYAERETEFNMPERRLVERLVFADSAAATRARTRIDDGIALEMLVSERGLDMADI 305

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            +G  S+E +   + AD +FS A+ G+    I  + G  +  V+ +  +   +F+E +  
Sbjct: 306 DMGDVSREDLG--AAADPVFS-AQAGEVVGPIDTNLGPALFRVNAVLAAQITTFEEAEPR 362

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           +  ++   +A   ++     +++ LA G +++++++   +                  E+
Sbjct: 363 LREELAADRARRVIEAKIDTVDDLLAGGATLEDVAKETDL------------------EL 404

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVA---------LPDGSYMWVQIKESIPARDRKLEE 481
            +I +   L   + G D   +    VA         L DG    +++   +  R + LE+
Sbjct: 405 GSIDWHPGLTEGMAGYDSFRAAAQAVATGDYPEVEQLADGGIFALRLDGIVEPRIQPLED 464

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
           V   V + W+   T   + ++    + E  + G +F D+G       LT  ++  M
Sbjct: 465 VRDAVLRGWRAEATVTALRAQLEPQLAEL-RAGASFADLG-------LTATEVTDM 512


>gi|209542341|ref|YP_002274570.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530018|gb|ACI49955.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 643

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 116/519 (22%), Positives = 235/519 (45%), Gaps = 20/519 (3%)

Query: 1   MLEIIRKA-SRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFI 57
           M+  +R A   +W+ +I   +LF+ F+ WG+ D L ++    +  V  VG Q +   SF+
Sbjct: 1   MISFLRHAFVDSWLGRIIAGLLFLAFVGWGVGDVLSNIGSERADVVARVGDQTITTDSFL 60

Query: 58  NSWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           ++ + EL  +++++G    S+   A      +++L  LV+ + +      +G+      +
Sbjct: 61  SAVQNELQQLARQMGVGDPSQIPAAARGQAAQQVLQRLVTQSEMILAAGRLGVTVPDDVL 120

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             E+    +F G D +F   +F SRL + G+ E   +D     L+   +V     G R  
Sbjct: 121 RDEVFGLQIFKGPDGRFDRALFDSRLRQIGMTEARLLDIVRTDLAVRALVEPLQSGARAP 180

Query: 176 NLLLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            +++ +A  F  + R++D   I L ++  PA   P  A L ++++ +   +R PE++   
Sbjct: 181 EVMVRRAFDFGAQARTIDLVRIALGDQGTPA---PDTATLRRFYDNHPWLFRLPEFRHAR 237

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
            ++       + I+I + EL+  Y+  + KY  PE R+V+ +  P+Q  A       + G
Sbjct: 238 IVVLSPDTVARSIDIPDAELRRLYDAQQSKYHVPETRSVQIVTAPSQARAQAIAAQWQAG 297

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             + ++ +   K  + + + +  +  IP   LA  +F+ A        +    G+V+  V
Sbjct: 298 ADWAKI-QSGAKDSAAVGMDNVRESAIPSPGLAKLVFA-APASVLQGPVQTDTGWVVFRV 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + + P     F   ++++ +QM  T+A++ V    ++L++ +A G  +D I      V+I
Sbjct: 356 TQVTPPHDTDFATARQELRDQMAQTQAADLVGPRVQKLQDAIA-GGGLDRIPDNLGAVAI 414

Query: 414 DLPLVDFAGKDVKGKEVAAIP----YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
              L D  G+   G E A +P     +  ++ R+F +    +    V  PD ++  V + 
Sbjct: 415 AGTL-DEQGRTQAG-EPAPVPGSDALRRAIVARIFAQAK-GANPTLVQGPDNAWFAVAVD 471

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
              P + R  + V    +  W+        + +A  L L
Sbjct: 472 SVEPGQLRPFDAVPDQGRSAWEDESRRHTANVQATALYL 510


>gi|162147717|ref|YP_001602178.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786294|emb|CAP55876.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 643

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 116/519 (22%), Positives = 235/519 (45%), Gaps = 20/519 (3%)

Query: 1   MLEIIRKA-SRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFI 57
           M+  +R A   +W+ +I   +LF+ F+ WG+ D L ++    +  V  VG Q +   SF+
Sbjct: 1   MISFLRHAFVDSWLGRIIAGLLFLAFVGWGVGDVLSNIGSERADVVARVGDQTITTDSFL 60

Query: 58  NSWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           ++ + EL  +++++G    S+   A      +++L  LV+ + +      +G+      +
Sbjct: 61  SAVQNELQQLARQMGVGDPSQIPAAARGQAAQQVLQRLVTQSEMILAAGRLGVTVPDDVL 120

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             E+    +F G D +F   +F SRL + G+ E   +D     L+   +V     G R  
Sbjct: 121 RDEVFGLQIFKGPDGRFDRALFDSRLRQIGMTEARLLDIVRTDLAVRALVEPLQSGARAP 180

Query: 176 NLLLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            +++ +A  F  + R++D   I L ++  PA   P  A L ++++ +   +R PE++   
Sbjct: 181 EVMVRRAFDFGAQARTIDLVRIALGDQGTPA---PDTATLRRFYDNHPWLFRLPEFRHAR 237

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
            ++       + I+I + EL+  Y+  + KY  PE R+V+ +  P+Q  A       + G
Sbjct: 238 IVVLSPDTVARSIDIPDAELRRLYDAQQSKYHVPETRSVQIVTAPSQARAQAIAAQWQAG 297

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             + ++ +   K  + + + +  +  IP   LA  +F+ A        +    G+V+  V
Sbjct: 298 ADWAKI-QSGAKDSAAVGMDNVRESAIPSPGLAKLVFA-APASVLQGPVQTDTGWVVFRV 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + + P     F   ++++ +QM  T+A++ V    ++L++ +A G  +D I      V+I
Sbjct: 356 TQVTPPHDTDFATARQELRDQMAQTQAADLVGPRVQKLQDAIA-GGGLDRIPDNLGAVAI 414

Query: 414 DLPLVDFAGKDVKGKEVAAIP----YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
              L D  G+   G E A +P     +  ++ R+F +    +    V  PD ++  V + 
Sbjct: 415 AGTL-DEQGRTQAG-EPAPVPGSDALRRAIVARIFAQAK-GANPTLVQGPDNAWFAVAVD 471

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
              P + R  + V    +  W+        + +A  L L
Sbjct: 472 SVEPGQLRPFDAVPDQGRGAWEDESRRHTANVQATALYL 510


>gi|56460109|ref|YP_155390.1| periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           loihiensis L2TR]
 gi|56179119|gb|AAV81841.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           loihiensis L2TR]
          Length = 622

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 129/573 (22%), Positives = 253/573 (44%), Gaps = 67/573 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+++ AK  LV++ + F + G+   + S      V  V  +++P S +  ++
Sbjct: 1   MLERIREGSQSYTAKAILVLIILTFALAGVGGYITS-DTEDAVAKVNGEEIPRSDYDRAY 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + ++ G     + S+      L   +L+ L+    L Q+ ED G+     +V  
Sbjct: 60  ENERSRLQEQFGDMFSAITSDPDYMRNLRSGVLEQLIEQELLVQYAEDNGMRVSPEQVKA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     F     +F +DV++  L   G +     + + K++ +       + G+  +  
Sbjct: 120 AIRDISQFRTA-GQFDNDVYLMALRNAGYSP----EAFAKVMQQDMTRNQLLRGLSATAF 174

Query: 178 LLDQAK----RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           +L+       R   ++RS  ++V +N       + +   +  ++++ +D +R  E   ++
Sbjct: 175 VLEPEAIAFMRLQSQSRSGGFLVASNESFEEQVEIAEQDIENFYQQNQDMFRTQEKLSVA 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQ 288
           Y+   +   E ++EIS++E++  Y++ +++Y + E R V  ++        +K+A+EA  
Sbjct: 235 YVELSLAAVESEVEISDEEVRQYYDERQQQYSTEEERRVSHILIEFETDNAKKKAEEALA 294

Query: 289 SLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
            LK+G  F ++A+         EQG  L  I  G   +++        S+F L   GD +
Sbjct: 295 ELKQGADFSEVAQTYSDDTFSAEQGGDLGWIEAGMMDEDFDA------SVFELENVGDLS 348

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL---- 395
            V+  SFGY I  +++++      F EVK ++  Q+   KA ++  E  ++L E      
Sbjct: 349 DVVETSFGYHIIKLTDLREGSVTPFNEVKDEVRQQLLTEKAEDRYFEKQQKLAEISFEQP 408

Query: 396 -ALGTSMDEIS---RREKIVSID---LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
             L  + +EI    RR  + + D    PL D    DV    V    + EQL+      D 
Sbjct: 409 DTLEPAAEEIGSTVRRSDLFTRDRAPTPLSD----DV----VLNNLFSEQLIKEKLNSD- 459

Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
                  +   D   + V++ E  P R ++L+EV   +  + +          KA QL L
Sbjct: 460 ------IIETSDDRSLVVRVTEHQPVRVKELDEVREKIVSELRV--------EKAQQLAL 505

Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
           E + E       G+ +   ++  + I R + E+
Sbjct: 506 EQANEWMQAWKAGEEVSDEIVWVDSIQRNNGEH 538


>gi|23010100|ref|ZP_00050908.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 287

 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 5/242 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+ IR AS+ W+ K+ L V+F  FLI G++    +  F    SSTV +VG+  +     
Sbjct: 1   MLQSIRNASQHWLGKVVLTVIFT-FLIAGVAIFGVEEFFRGGSSSTVATVGKTPISAEEV 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ +L     ++   +  ++ARS+GL++++L  L++ A LDQ   D+GL      V 
Sbjct: 60  RTAYQNQLQRYQAQLKRTLTPDQARSLGLERQVLSQLITEAALDQKTTDLGLAVSDAAVL 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   +  F   +F   L R G+NE  ++     +++R  +    V  +    
Sbjct: 120 RAIQDEPSFKNANGTFDRVLFYQTLQRAGLNEAMFVREQRSVIARLQLADAIVAELPVPQ 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            + +   R+  E RS   + L       I DPS   L+ +++  K ++RAPEY+R+  ++
Sbjct: 180 AIREAVHRYSTERRSAAVLTLAPSAAGEIPDPSEEELSAYYDNNKASFRAPEYRRLKLLV 239

Query: 237 FD 238
            D
Sbjct: 240 LD 241


>gi|238791435|ref|ZP_04635073.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia intermedia ATCC
           29909]
 gi|238729051|gb|EEQ20567.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia intermedia ATCC
           29909]
          Length = 628

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 190/394 (48%), Gaps = 26/394 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+   V KI L ++ + F++ G+   L  + GS+   + V  Q++  +    +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRAQLEQA 58

Query: 60  WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            + E G + Q++G     + +     + L +++L  LV+   LDQ+ + +GL A   +V 
Sbjct: 59  VQSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174
             I ++P F   DNKF ++ ++  + R G    ++     + L    ++  F   G + P
Sbjct: 119 DAIRQAPYFQ-TDNKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177

Query: 175 ------SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
                 S L+L Q        R V    ++ + + A    ++  L  ++++ K+++ APE
Sbjct: 178 VEAQAMSELILQQ--------REVRLATIDLKALQAQQKVTDEELKAYYDQNKNSFIAPE 229

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
             ++S+I+ D    + KI ++ +++ A YE +K  Y  PE R    + F  + EA  A  
Sbjct: 230 QMKVSFIVMDAAAMQDKITLTEEDIAAYYELHKSSYTQPEQRNYSVIQFKTEAEAKTALD 289

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSF 346
            LKKG  F  +A+E+   +     G       PD + AD +   +L +KG  + V+  S 
Sbjct: 290 ELKKGADFAAMAKEKSTDIISRKNGGELGWLEPDTT-ADELKQANLNEKGQLSDVVKSSV 348

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           GY+I  +++IKP+      EV   +A Q++  KA
Sbjct: 349 GYLIVRLNDIKPAQVKPLSEVHDALAKQVKQGKA 382


>gi|296116178|ref|ZP_06834796.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977284|gb|EFG84044.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 639

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/489 (21%), Positives = 208/489 (42%), Gaps = 16/489 (3%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMIS 68
           +WV ++ + + F+ F+ WG+ D L ++    +  V  VG   +   ++  + + E+  I+
Sbjct: 8   SWVGRVIVGLFFLTFVGWGVGDVLMNIGTERADVVARVGPDPILVPAYEQALRTEMPQIA 67

Query: 69  QKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           Q++     S+   A    + +++L  L+    +     + GL      V  EI   P F 
Sbjct: 68  QQMHLDDPSQIPAATREQIAQQVLQRLILQDEVALAARNHGLLVPDSAVRAEIFAIPAFQ 127

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
            K+ KF    F +RL   G+ E   I+      +   ++     G    +LL  +     
Sbjct: 128 DKNGKFDRTTFNNRLRSSGMTEARLIELVRAEQASKALMEPIRNGAGAPDLLTRRIFDLE 187

Query: 187 FENRSVDYI-VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
            + R VD + V      PA   PS+A   ++   +   + APEY+    ++       + 
Sbjct: 188 AQTRKVDIVRVPFAAQTPAA--PSDAQARRFHTNHPWLFEAPEYRHARIVVLSPETVARS 245

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           + I + +L   YE+  +++ +PE R+V+ +  PN+  A E   + + G  +  + +  GK
Sbjct: 246 MTIPDADLHHMYEQQAQRFNTPETRSVQVITAPNEARARELLTTWQGGASWDAMQKSAGK 305

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
             + + +       IP   L   IF+ A     +P IH   G+ I  V ++ P+    F+
Sbjct: 306 DSASVEMDDIRISSIPSQELGRQIFN-APSDTVSPPIHTDGGWAIFRVLHVTPAHISDFE 364

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
             +  +  Q    +   ++ +  ++L++ +A G  +D I      V++    VD  G   
Sbjct: 365 SARPALQAQALAERVQAQIGDRVQKLQDAIA-GGGLDSIPSELGAVAV-AGNVDAHGMTQ 422

Query: 426 KGKEVAAIP----YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
           +G   A IP     ++ ++ RVF +    S    +  P+G++  V +    PAR    E+
Sbjct: 423 EGTP-APIPGSDAVRQAIVARVFSQPK-GSSPELLQAPEGTWYAVSVDGVTPARPLSYED 480

Query: 482 VLTDVKKDW 490
               V+  W
Sbjct: 481 SAQKVRDAW 489


>gi|329850639|ref|ZP_08265484.1| rotamase family protein [Asticcacaulis biprosthecum C19]
 gi|328840954|gb|EGF90525.1| rotamase family protein [Asticcacaulis biprosthecum C19]
          Length = 645

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/518 (20%), Positives = 228/518 (44%), Gaps = 19/518 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF---I 57
           M+ I+R  ++TW+ K  ++++   F+  G   + FS S S+ V+  G  KV  + F   +
Sbjct: 1   MISILRDFTKTWIFKGLMILIAASFIGVG-GASYFSGSNSTDVIVAGNVKVTAAEFKANV 59

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +S K+      +  G  + +E+  +  +  ++L  L        +++ +G+      +  
Sbjct: 60  DSMKRYY----ETQGQTITNEQLIAENIPGRLLAQLTDRKATIAWLDRLGVRPSSKLILA 115

Query: 118 EIARSPLF-HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
           E+A+ PLF +    +F  D +  +LA   + +K +     + ++    +     G+    
Sbjct: 116 EVAKIPLFFNSVTGRFDMDTYRQQLASRDMTDKMFEADLREQIAEQQYISSAQAGLEAPR 175

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
           +       F  ++R      L+ ++V    +P+ A +  +++     +  PE +  S I 
Sbjct: 176 VFAATDAAFGLQSRDASMFFLSPQNVTMPGEPTQADIETFYKANLQRFTLPESRAASVIT 235

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
           F V    K + +S+++L+  YE  +    +PE+RT  Q+  P+   A++   +LK G+  
Sbjct: 236 FSVVNYAKSVSVSDEDLRQLYESRRASLATPEVRTFVQVRAPDMAAANKVSAALKAGRS- 294

Query: 297 IQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
              AEE  K+     IS     +  + D  +A++ F + + G+ +  + G+ G  +  + 
Sbjct: 295 ---AEEAAKANKGEVISYSLRPQTAVADDKIAEAAFKM-QTGEISAPVQGTLGISVIKMG 350

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
            IK     SF+  +  +  ++R  +A+EK+ E      + LA G   D  +RR  +    
Sbjct: 351 EIKIGSAPSFESARAQLDEELRRQRATEKLNEATNAFADALAKGEEFDAAARRLNLTVAP 410

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           L  +   G    G   +       L+  +F      S    + L +G Y  +++    P+
Sbjct: 411 LEPITADGMGRSGTNYSTY---GALVKGIFDLPQVGSVSEVLPLGEGEYFALKLTGLQPS 467

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
               L +V  ++   W+  K AE ++++A++ +   +K
Sbjct: 468 GAPPLAQVQAELAVLWRREKAAETINAEADKAMARLAK 505


>gi|294011597|ref|YP_003545057.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium japonicum UT26S]
 gi|292674927|dbj|BAI96445.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium japonicum UT26S]
          Length = 649

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 113/466 (24%), Positives = 202/466 (43%), Gaps = 29/466 (6%)

Query: 1   MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALF--SVSGSSTVVSVGRQKVPFS 54
           ML + R+  R+    + A IFL ++   F++  ++   F  S+ G  T    G  ++  +
Sbjct: 1   MLSVFRRFIRSKLGAFAALIFLGIIAAAFIMGDITSGNFGSSMGGGETAARAGGSRLTMT 60

Query: 55  S--------FINSWKQELGMISQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
                    F N+ +   G+   +IG F+         G   ++ D LV+  TL ++  D
Sbjct: 61  ELQDRVQRVFENARRSNPGL---QIGDFLAQ-------GGAAQVYDQLVASMTLKEYASD 110

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK-MLSRTDV 164
             +      V  +IA+ P F      FS + F   L RE I E+   D  ++ +L R  +
Sbjct: 111 QKVHISKRLVDAQIAQIPAFQDAAGNFSQENFRQLLLRERITEQALRDDISREILERQML 170

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
             + +G     +++L  A     E R     V+       IADP++A L  ++ K    Y
Sbjct: 171 APLGLGVKLTDSMVLPYAS-LLLEARQGTIAVIPATAFKDIADPTDAQLDDFYRKNAARY 229

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             PE +RI Y + D     +  + ++ E+ + Y +NK  Y + E R+ EQL+ P Q  A 
Sbjct: 230 TIPEQRRIRYAVIDAERFAQAAQPTDAEIASYYNQNKAAYAAKESRSFEQLILPTQAAAK 289

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
                +K GK     A+  G S+S++   S         +   +    AK+G+    + G
Sbjct: 290 AIADQVKGGKSLAAAAQSAGLSVSELKDQSREALASAASAAVANAGFAAKQGELAGPLRG 349

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
           S G+V+  V+ ++ +   +   V+ +I   +R  K    + +   ++E+ +A G S DE+
Sbjct: 350 SLGWVLLRVTAVRTTPARALAAVRDEIVAALRAQKEKRLLNDFTGKIEDQIANGGSFDEV 409

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG--KDD 448
            +   +     P +  +GK V+          + LL  VFG  +DD
Sbjct: 410 VKDNGLKLETTPFLVSSGKQVEDAAYQVPADVKPLLAPVFGMSQDD 455


>gi|197105219|ref|YP_002130596.1| rotamase family protein [Phenylobacterium zucineum HLK1]
 gi|196478639|gb|ACG78167.1| rotamase family protein [Phenylobacterium zucineum HLK1]
          Length = 638

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 128/557 (22%), Positives = 246/557 (44%), Gaps = 22/557 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IR+ +++WVA + + +L V F ++G++D +FS +    V+  G + V  + F   +
Sbjct: 1   MLAAIRQFAKSWVAAVLIGLLIVSFAVFGIND-VFSGATGDQVIKAGSRVVTSAEFRREY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +     + Q+ G  +  E A + G+D+++L+ L +     + +  IG+      +  EI+
Sbjct: 60  EDYRKRLEQQAGQPITPEMAEANGIDRQVLNGLATREAFAEMLHKIGIRPSDKLLVAEIS 119

Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNLL 178
           + P F      +F  + F  RLA   +   E  D   +        G  VG G+R     
Sbjct: 120 KIPAFFDPISGRFDRNTFQQRLAENDMT-PEGFDRALRDQMAAQHWGAGVGEGLRAPRAY 178

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                 F  E+R V +  +   +VPA+A P++  LT + ++  +    PE + ++ + F 
Sbjct: 179 GALGAIFGLESRDVAWFNVTAANVPAVAAPTDEQLTAFMKENAEQLTRPEMRVLTVVRFT 238

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                +   +   EL+  YE  K+ +  PE RT+ Q+   +   A +    L +G     
Sbjct: 239 PQAVPQNTPVDEAELKKLYEFRKDTFSRPETRTLVQIPAKDAAAAQQIQAGLARGDDPAA 298

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +A+  G  +  I+     K  + D  +AD  F L + G       G  G  +  V ++ P
Sbjct: 299 VAKAAGVDV--ITYEDKPKTALADRRVADVAFGL-QPGQVA-RAQGELGLAVVKVISVTP 354

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             TV+ +E +  +  ++R   A++KV E  +  +E    G  +   +++  + ++ +  V
Sbjct: 355 GQTVTLEEARPVLEAELRKNAAAQKVYEQAEAYDEAHRGGADLAAAAQQVGVPAMTVGPV 414

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G D +G+ V  +     +L + F        D T A  +G    V+++  +P     
Sbjct: 415 TRQGVDEQGRPVPGL--TPAILEQAFSLPAGGEGDLTDA-GEGESFAVKVERVVPPAMPP 471

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL--------GASLLT 530
           L EV T++ + W   +TA  + ++AN+L  E  ++G++   +  +         G S  T
Sbjct: 472 LAEVRTELARVWSARETARRMEARANELA-ERVRKGESLEAVAASASLKVSRAEGLSRQT 530

Query: 531 TNQINRMDNE--NKFFG 545
             Q   +  E  N+ FG
Sbjct: 531 AGQDPALSGELLNRAFG 547


>gi|294083766|ref|YP_003550523.1| Parvulin-like peptidyl-prolyl isomerase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663338|gb|ADE38439.1| Parvulin-like peptidyl-prolyl isomerase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 620

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 128/510 (25%), Positives = 235/510 (46%), Gaps = 35/510 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-VSGSSTVVSVGRQKVPFSSFINS 59
           ML+ +R  +++ + K FLV L   F +WG+ D     + GS   VS   + +        
Sbjct: 1   MLQAMRSGAKSPIMKAFLVFLAGGFALWGVGDITTGLIGGSDKAVSASEESLSPREVALE 60

Query: 60  WKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++       +  ++ NS    A   GL  +I+ +L      +     +GL         
Sbjct: 61  FER------ARRNYMPNSSTGEALQTGLLSEIVGSLSRAVIFNAENNTLGLTVTRAMQRD 114

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM---RP 174
            +A    F  +   FS   F+  LA  GI+E EY+      L R  +    V G+   + 
Sbjct: 115 AVANETNFQDEMGSFSEGRFMQTLASAGISEAEYLGRVDSALKRDQLTRALVAGVVSNKA 174

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPA--IADPSNAVLTQWFEKYKDNYRAPEYK-- 230
           ++ LL    ++  + R V    + +  V A  I  PS+A L  +F + K +Y AP  +  
Sbjct: 175 ADTLL---TKYELQQRVVK---MQSFAVDADNIGTPSDADLDTYFSENKSSYDAPTVRSA 228

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           R+ +I   + E +  ++IS D ++  +    +++ +PE R V Q+VF + K+A+EA   +
Sbjct: 229 RVGFISATLIEAD--VDISEDMIKDAFGTRIDEFSTPETRVVRQMVFEDAKKANEARARV 286

Query: 291 KKGKKFIQLAEEQGK-SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
            +G+ F  +A +    + +D+ LG+ +++ + D ++AD++F  A     T  +   FG  
Sbjct: 287 DQGEDFNAVAADMLNWTDTDVMLGTVTRDGL-DGAIADAVFD-ASVNVVTGPVETLFGQH 344

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE- 408
           I  V +I      + ++V+ +I   +R  +A + + E    LE+ +A G S+DE   +  
Sbjct: 345 ILIVDDITEGGNATLEDVRDEITRTLRSEEAIDLLYERANLLEDEIASGASLDEALGKAG 404

Query: 409 -KIVSIDLPLVDFAGKDVKGKEV---AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
            KIV+I+   +D  G D+ G+ +   + I  +  ++  ++  D         A  D  +M
Sbjct: 405 GKIVTIN--DIDRNGLDIDGQPMVDDSEIAQESAIIEAIWTNDIGTLSVLQEASADIFFM 462

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
            V +     AR R L+EV     KDWK V+
Sbjct: 463 -VDVTTETEARPRTLDEVKQRAIKDWKLVQ 491


>gi|51595313|ref|YP_069504.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia
           pseudotuberculosis IP 32953]
 gi|153948580|ref|YP_001402048.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia
           pseudotuberculosis IP 31758]
 gi|170025447|ref|YP_001721952.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pseudotuberculosis
           YPIII]
 gi|186894330|ref|YP_001871442.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pseudotuberculosis
           PB1/+]
 gi|51588595|emb|CAH20203.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
           outer membrane proteins [Yersinia pseudotuberculosis IP
           32953]
 gi|152960075|gb|ABS47536.1| peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis IP
           31758]
 gi|169751981|gb|ACA69499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           pseudotuberculosis YPIII]
 gi|186697356|gb|ACC87985.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 628

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 185/392 (47%), Gaps = 22/392 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+   V KI L ++ + F++ G+   L  + GS+   + V  Q +  +    +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDYAAKVNDQDISRAQLEQA 58

Query: 60  WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            + E G + QK+G    V+ +       L +++L  L++   LDQ+   +GL     +V 
Sbjct: 59  MQSERGRLQQKLGEQFSVLAANEGYMQQLRQQVLGQLINNVLLDQYARKLGLTVSDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174
             I + P F   ++ F ++ +++ + + G   +++     + L    ++  F   G + P
Sbjct: 119 ESIRQIPDFQTGEH-FDNNRYLALINQLGYTPEQFAQLQRQQLINQQLLKAFSDTGFVLP 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
             + +        + R V    L+ + + A    ++  L  ++++ K N+ APE  ++S+
Sbjct: 178 --IEVQAMSALVLQQRDVRLATLDLKALQAEQKVTDEELQAYYDQNKHNFIAPEQMKVSF 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           I  D    +  I ++ +++ A Y++N+  Y  PE R    + F  + EA  A   LKKG 
Sbjct: 236 IAMDAAAMQSNITVTEEDIAAYYDQNRSSYTQPERRNYSVIQFKTEAEAKAALDELKKGA 295

Query: 295 KFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            F  +A+E  KS   IS      LG    E  PD   A    +L++KG  + VI  S GY
Sbjct: 296 DFAVIAKE--KSTDIISRNNGGELGWLEPETTPDEVKA---ANLSEKGQLSDVIKSSVGY 350

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           +I  +++IKP       EV  ++A +++  KA
Sbjct: 351 LIVRLNDIKPELVKPLSEVHDELAKKLKQEKA 382


>gi|170767918|ref|ZP_02902371.1| peptidylprolyl isomerase [Escherichia albertii TW07627]
 gi|170123406|gb|EDS92337.1| peptidylprolyl isomerase [Escherichia albertii TW07627]
          Length = 623

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 144/652 (22%), Positives = 291/652 (44%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDRY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  + S L + G++     D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNSILNQMGMS----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQAVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y++++E++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQEQFTQPQRMRYSIIQTKTEDEAKAVLAELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATVPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +++P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDVQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L++E  K GK      + + A
Sbjct: 467 RISEHKPETVKPLADVQEQVKAMVQHNKAEQQAKLDAEKLLVEL-KAGKG----AEAMQA 521

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
           + L   +   ++      G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 522 AALKFGEPKTLNRS----GQDPISQAAFALP------LPTQDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P ++K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEEQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|260428591|ref|ZP_05782570.1| putative peptidyl-prolyl cis-trans isomerse D [Citreicella sp.
           SE45]
 gi|260423083|gb|EEX16334.1| putative peptidyl-prolyl cis-trans isomerse D [Citreicella sp.
           SE45]
          Length = 615

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 113/517 (21%), Positives = 220/517 (42%), Gaps = 16/517 (3%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           VL   F+ +G    +    G+ ++ SVG   +  + +  + + E+  +  + G  V  E+
Sbjct: 16  VLIASFVGFGAFGTVNFTGGAGSIGSVGDTTIETTDYARALQNEMRAVEAQTGQPVTLEQ 75

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           AR  GL  ++L  +V+ A LD+    +G+     RV  ++     FHG D  F    +  
Sbjct: 76  ARQFGLTDQVLAQVVTNAALDEETRQLGILVGDERVAEDLRNVQAFHGPDGNFDRSAYSY 135

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN- 198
            L   G+ E E+ D   +  +R+ +    + G    +  ++    +  E R   +  L+ 
Sbjct: 136 ALQNAGLKEAEFEDSLRQESARSILQAAVLSGTTLPDTYVNTLLGWVGETRDFTWAKLDR 195

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
           +     +  P++  L  W+++  D +  PE K I+Y           +E+    L+  YE
Sbjct: 196 DALTTGLPVPTDEELQAWYDENIDQFTLPETKVITYAWLTPDMIVDTVEVDEQALRDAYE 255

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSK 317
           +   ++  PE R VE+LVF ++ EA  A   +  G+  F  +  E+G ++ D  +G  ++
Sbjct: 256 ERHAEFNMPERRLVERLVFSSEDEAQSAADRIASGETDFEGVVAERGLAIIDTDMGDVTR 315

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             + +    D++F  A+ G        + G  +  V+ +       F+E   D+ + + +
Sbjct: 316 ASLGEA--GDAVFG-AEVGAVVGPEPTNLGPALFRVNGVLAEQVTPFEEAVPDLRDALVL 372

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
            +A   ++   + L++ LA G +++E+S+       D+ L      +     +A      
Sbjct: 373 DRARRVIEGMSQDLDDELAGGATLEELSQ-----DTDMELGQIEWSETSDTGIAGYEAFR 427

Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
           +    V   D P   D    L DG    +++ E         E+V  +V + W+  +  E
Sbjct: 428 EAAQAVQDADYPAIDD----LGDGGVFALRLDEQRDPAPAPFEDVRDEVAQLWEQDQATE 483

Query: 498 EVSSKANQLVLEYSKEGKNFRDIG-KNLGASLLTTNQ 533
            + ++A +L    S  G +F D G      S LT NQ
Sbjct: 484 ALVAQAEELATAISG-GGSFEDSGLSPTQESGLTRNQ 519


>gi|22124938|ref|NP_668361.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
           KIM 10]
 gi|45440627|ref|NP_992166.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108808639|ref|YP_652555.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
           Antiqua]
 gi|108811102|ref|YP_646869.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
           Nepal516]
 gi|145600047|ref|YP_001164123.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
           Pestoides F]
 gi|149365001|ref|ZP_01887036.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CA88-4125]
 gi|162420506|ref|YP_001607415.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Angola]
 gi|165926634|ref|ZP_02222466.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936039|ref|ZP_02224609.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010989|ref|ZP_02231887.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212996|ref|ZP_02239031.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399316|ref|ZP_02304840.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421506|ref|ZP_02313259.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423714|ref|ZP_02315467.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468476|ref|ZP_02333180.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis FV-1]
 gi|218930183|ref|YP_002348058.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
           CO92]
 gi|229838757|ref|ZP_04458916.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896089|ref|ZP_04511259.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides A]
 gi|229899325|ref|ZP_04514468.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901331|ref|ZP_04516453.1| Peptidyl-prolyl cis-trans isomerase ppiD [Yersinia pestis Nepal516]
 gi|270489517|ref|ZP_06206591.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
 gi|294504885|ref|YP_003568947.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Z176003]
 gi|21957777|gb|AAM84612.1|AE013706_7 putative protease maturation protein [Yersinia pestis KIM 10]
 gi|45435484|gb|AAS61043.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774750|gb|ABG17269.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Nepal516]
 gi|108780552|gb|ABG14610.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Antiqua]
 gi|115348794|emb|CAL21748.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CO92]
 gi|145211743|gb|ABP41150.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides F]
 gi|149291414|gb|EDM41488.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CA88-4125]
 gi|162353321|gb|ABX87269.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis Angola]
 gi|165916184|gb|EDR34791.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921562|gb|EDR38759.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989989|gb|EDR42290.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205783|gb|EDR50263.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960425|gb|EDR56446.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051820|gb|EDR63228.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057884|gb|EDR67630.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681260|gb|EEO77354.1| Peptidyl-prolyl cis-trans isomerase ppiD [Yersinia pestis Nepal516]
 gi|229687727|gb|EEO79800.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695123|gb|EEO85170.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701012|gb|EEO89041.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides A]
 gi|262362950|gb|ACY59671.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis D106004]
 gi|262366870|gb|ACY63427.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis D182038]
 gi|270338021|gb|EFA48798.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
 gi|294355344|gb|ADE65685.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Z176003]
 gi|320016339|gb|ADV99910.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 628

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 185/392 (47%), Gaps = 22/392 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+   V KI L ++ + F++ G+   L  + GS+   + V  Q +  +    +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDYAAKVNDQDISRAQLEQA 58

Query: 60  WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            + E G + QK+G    V+ +       L +++L  L++   LDQ+   +GL     +V 
Sbjct: 59  MQSERGRLQQKLGEQFSVLAANEGYMQQLRQQVLGQLINNVLLDQYARKLGLTVSDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174
             I + P F   ++ F ++ +++ + + G   +++     + L    ++  F   G + P
Sbjct: 119 ESIRQIPDFQTGEH-FDNNRYLALINQLGYTPEQFAQLQRQQLINQQLLKAFSDTGFVLP 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
             + +        + R V    L+ + + A    ++  L  ++++ K N+ APE  ++S+
Sbjct: 178 --IEVQAMSALVLQQRDVRLATLDLKALQAEQKVTDEELQAYYDQNKHNFIAPEQMKVSF 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           I  D    +  I ++ +++ A Y++N+  Y  PE R    + F  + EA  A   LKKG 
Sbjct: 236 IAMDAAAMQSNITVTEEDIAAYYDQNRSSYTQPERRNYSVIQFKTEVEAKAALDELKKGA 295

Query: 295 KFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            F  +A+E  KS   IS      LG    E  PD   A    +L++KG  + VI  S GY
Sbjct: 296 DFAVIAKE--KSTDIISRNNGGELGWLEPETTPDEVKA---ANLSEKGQLSDVIKSSVGY 350

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           +I  +++IKP       EV  ++A +++  KA
Sbjct: 351 LIVRLNDIKPELVKPLSEVHDELAKKLKQEKA 382


>gi|238788012|ref|ZP_04631808.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia frederiksenii ATCC
           33641]
 gi|238723960|gb|EEQ15604.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia frederiksenii ATCC
           33641]
          Length = 628

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 185/388 (47%), Gaps = 14/388 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+   V KI L ++ + F++ G+   L  + GS+   + V  Q++  +    +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRAQLEQA 58

Query: 60  WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            + E G + Q++G     + +     + L +++L  LV+   LDQ+ + +GL A   +V 
Sbjct: 59  VQSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDDQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174
             I ++P F   D KF ++ ++  + R G    ++     + L    ++  F   G + P
Sbjct: 119 DAIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
                  A     + R V    ++ + + A    ++  L  ++++ K+++ APE  +IS+
Sbjct: 178 VEAQAMSA--LILQQRDVRLATIDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISF 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           I  D    + KI ++ D++ A Y+++K  Y  PE R    + F  + EA  A   LKKG 
Sbjct: 236 IAMDAAAMQDKITVTEDDIAAYYDQHKSSYGQPEQRNYSVIQFKTEAEAKTALDELKKGA 295

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAH 352
            F  +A+E+   +     G       P+ + AD +   +L +KG  + V+  S GY+I  
Sbjct: 296 DFAAMAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSVGYLIVR 354

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKA 380
           +++IKP       EV   +A Q++  KA
Sbjct: 355 LNDIKPEQVKPLSEVHDALAKQVKQEKA 382


>gi|123443338|ref|YP_001007312.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090299|emb|CAL13165.1| peptidyl-prolyl cis-trans isomerase D [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 628

 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 189/394 (47%), Gaps = 26/394 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+   V KI L ++ + F++ G+   L  + GS+   + V  Q++  +    +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRAQLEQA 58

Query: 60  WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            + E G + Q++G     + +     + L +++L  LV+   LDQ+ + +GL A   +V 
Sbjct: 59  VQSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174
             I ++P F   D KF ++ ++  + R G    ++     + L    ++  F   G + P
Sbjct: 119 DAIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177

Query: 175 ------SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
                 S L+L Q        R V    L+ + + A    ++  L  ++++ K+++ APE
Sbjct: 178 VEAQAMSELILQQ--------REVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPE 229

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
             +IS+I  D    + KI ++ +++ A Y+++K  Y  PE R    + F  + EA  A  
Sbjct: 230 QMKISFIAMDAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALD 289

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSF 346
            LKKG  F  +A+E+   +     G       P+ + AD +   +L +KG  + V+  S 
Sbjct: 290 ELKKGADFAAIAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSV 348

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           GY+I  +++IKP+      EV   +A Q++  KA
Sbjct: 349 GYLIVRLNDIKPAQVKPLSEVHDALAKQVKQEKA 382


>gi|89054374|ref|YP_509825.1| putative peptidyl-prolyl cis-trans isomerse D [Jannaschia sp. CCS1]
 gi|88863923|gb|ABD54800.1| putative peptidyl-prolyl cis-trans isomerase D [Jannaschia sp.
           CCS1]
          Length = 617

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 135/633 (21%), Positives = 267/633 (42%), Gaps = 38/633 (6%)

Query: 5   IRKASRTWVAKIFLVVLF-VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
           + K++   V+ +F+ +L  + F+            G+S V SVG  ++    +  +   E
Sbjct: 1   MAKSAAKKVSNVFVWILMGLLFVALAGFGIGSFSGGASQVGSVGDVEITADDYFRALNNE 60

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
           +   S      V     R+ G+D +IL  L + A L      +G+      V  +IA+  
Sbjct: 61  INAQSADERRAVPFAEIRARGIDAQILAGLTARAALSHEAGAMGISVGDAEVAAQIAQVQ 120

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
            F      F  + +   L ++G   +E+ +   + ++R  +    +GG+ P+ +  +   
Sbjct: 121 AFQNTSGNFDRNTYEFVLQQQGATPREFEEDTREDVARALLQTAVIGGLTPNEIFAETIT 180

Query: 184 RFYFENRSVDYIVLNNRH----VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
            +  E R  D+  L  R     VP IA+P++A L  +++++ + +  PE +RI+Y     
Sbjct: 181 AYQSETR--DFTRLEVREGDLTVP-IAEPTDAELAAYYDEFPERFTRPEARRITYAWIIP 237

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD-EAFQSLKKGKKFIQ 298
                 +EI  D L+  Y+   ++Y  PE R +E+LVF +  E D        +   F  
Sbjct: 238 SAIMDDVEIDEDALRELYDDRIDEYVQPERRLLERLVFNSDAEVDAALAAIEAEETDFDT 297

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           L  ++  +L D+ LG  + + +     A +I    +  +    +    G  +  V+ +  
Sbjct: 298 LVADRDLTLEDVDLGEIAADDL--SDAAAAIIFADEDSELLGPVPSPLGPALFRVNAVLQ 355

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
           S  V F+E + D++ ++    A  ++ +  + +++ LA G +++E+S    +    L  +
Sbjct: 356 SSEVPFEEARDDLSAELAQEGARRQIDDMREGIDDLLASGATLEELSDGTVMT---LGTL 412

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
           D+     +G  +AA          V   D P      + L DG    +++ E +P     
Sbjct: 413 DYTPASEEG--IAAYDNFRDAAVSVQDSDFP----ELLELSDGGLFALRLDEVVPPTLPP 466

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
           L+E+  +V + W+     + V+ +A+QLV + ++ G    D+G      L     I R D
Sbjct: 467 LDEIEAEVAEAWQATALRDAVAERASQLVAQLAQ-GATLEDLGDTAEERL-----IRRQD 520

Query: 539 NENKFFGYDGISQVF----SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
                     ++QVF    +G V M+   P  +    V     NS V    +    +S +
Sbjct: 521 LLPDLPAT-TVAQVFQLEGTGDVVMI---PGADAAHIVRLDTINSGVRDAPDTSVILSIM 576

Query: 595 ----TQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
                Q M  D+ ++    L++   +T +  +I
Sbjct: 577 NQSIAQSMAVDIFEAYGQALQANAGITTNQGVI 609


>gi|283784267|ref|YP_003364132.1| peptidyl-prolyl cis-trans isomerase D [Citrobacter rodentium
           ICC168]
 gi|282947721|emb|CBG87276.1| peptidyl-prolyl cis-trans isomerase D [Citrobacter rodentium
           ICC168]
          Length = 624

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 142/657 (21%), Positives = 292/657 (44%), Gaps = 66/657 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L ++ L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NGERNRMQQQLGDQY-SELAANEGYMKTLRQQTLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF ++ + + + + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFSTPAFQ-VDGKFDNNHYNALVIQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++ + + A    +   +  ++E++K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVSQQRVVREATIDVQALAAKQQATEQEVASYYEQHKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    +K +  ++ ++Q+ Y+++++++  P+      +    + EA     +L K
Sbjct: 234 SYIKLDAAAMQKPV--TDADVQSYYDQHQDEFTQPQRSRYSIIQTKTEDEAKAVLDALNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ + ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFATLAKEKSADIISACNGG-DMGWLEEATMPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL--------GTSMD 402
           A + +++P+      EV  DIA          KVK++ K L+ F AL            +
Sbjct: 351 ARLDDVQPAKVKPLSEVHDDIA---------AKVKQE-KALDAFFALQQKVSDAANNDTE 400

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDG 461
            ++  E+   +      +  +D   +E+   P  + +    + G++    ++  +   DG
Sbjct: 401 SLAGAEQAAGVKAVETGWFSRDSLPEELNFKPVSDAIFDGSLVGENGTPGRNSDIITVDG 460

Query: 462 SYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN---F 517
             ++V +I E      + L +V   V +  K  K A++    A +L++E  K GK     
Sbjct: 461 DRVFVLRISEHKAEAVKPLADVKDQVTERVKYDKAAQQAKLDAEKLLVEL-KAGKGAEAM 519

Query: 518 RDIGKNLGA--SLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--S 570
           +  G + GA  +L  TNQ             D +SQ     S P +    + + N +  +
Sbjct: 520 KAAGLSFGAQKTLSRTNQ-------------DPVSQAAFALSLPAKDKPGYGMANDMQGN 566

Query: 571 YVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            VV  +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D + Q+
Sbjct: 567 VVVLALDEVKAGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDAMEQQ 623


>gi|77360982|ref|YP_340557.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875893|emb|CAI87114.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 633

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 143/618 (23%), Positives = 264/618 (42%), Gaps = 64/618 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFI 57
           MLE IR+ S+  +AK+ L  + + F + G+   L    G +T   V  V   K+  + F 
Sbjct: 1   MLEKIREGSQGPIAKVILGAVILSFALAGIGSYL----GQTTEQPVAEVNGIKISQTEFN 56

Query: 58  NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +++ E G + Q+ G     + ++      + + ++D LV      Q   ++GL      
Sbjct: 57  RAFQNERGRLEQQFGEYFTQIAADPNYMAQIRQGVIDRLVQQELQTQLAAELGLRVSDES 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V   I   P F   ++ F++D ++  + +       + ++  K ++R+ +V    G    
Sbjct: 117 VRQTILELPYFKIGES-FNNDRYLQVIRQMNFQPDSFREYLRKDMTRSQLVSAVAGSDFA 175

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
               L+ A     + RS+DY+V+N   +      S   +  ++E     + +PE   ++Y
Sbjct: 176 LKNELESAIALQQQTRSIDYLVVNKEAMQDSVVVSEQEIADYYELNSGQFLSPERLSVNY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------F 287
           I     +      ++ D+++A YE++K +Y  PE R V  ++  N ++ D A        
Sbjct: 236 IELKAQDI-TVASVTEDDVKAYYEQSKAQYVEPEKRRVSHILIDNSEDDDAAKAKAESLL 294

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY------IPDVSLADSIFSLAKKGDFTPV 341
             L +G  F +LAE    S  DI  G    +       + D    D+ F+L  KGD++ V
Sbjct: 295 AQLNQGADFAELAE---SSSDDIVSGEMGGDLEWIERDVMDPVFEDAAFALENKGDYSDV 351

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           I   FGY I  +++++     ++ +VK D+  ++   + +EKV   Y++  E  AL    
Sbjct: 352 IASEFGYHIIKLTDLQAQQVKAYDDVKADLRAEL---EKAEKVDAFYEKQTEMAALAF-- 406

Query: 402 DEISRREKIVSIDLPLVD---FAGKDVKGKEVAAI-----PYKEQLLFRVFGKDDPLS-- 451
            EIS R         LVD    AG ++K   + A+     P     +       D L   
Sbjct: 407 -EISDR---------LVDAAEAAGVEIKSTPLVALNELPEPLNSPAVITALTSVDLLEDK 456

Query: 452 -KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
                + L +   + V++ E  PA  + L +V   +K      KT+     KA  L  E 
Sbjct: 457 VNSELIELGNEHVIVVRVNEHEPAATKALSDVSEQIKASLVNEKTSALAKEKARTLFAEV 516

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF--SGPVE--MVKCFPIE 566
            + GK+  D+        LT  Q  ++  ++       ++Q F  + P +  +V+   + 
Sbjct: 517 -QAGKSLNDVAAEQN---LTVRQEAQLTRQSYTVSPAIVTQAFKMAHPTDSAIVELVNLN 572

Query: 567 NGLSYVVF--KVTNSKVG 582
           NG + +V    VTN++V 
Sbjct: 573 NGDAAIVALKSVTNAEVA 590


>gi|149913756|ref|ZP_01902288.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp.
           AzwK-3b]
 gi|149812040|gb|EDM71871.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp.
           AzwK-3b]
          Length = 613

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/517 (21%), Positives = 216/517 (41%), Gaps = 23/517 (4%)

Query: 9   SRT--WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           SRT  W+    L++    F    L  A        TV  VG  ++  + +  + + E+  
Sbjct: 7   SRTFVWILMGLLIIGLAGFGATNLGGAF------GTVARVGTAEIRTNDYARALQNEIRA 60

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
              + G  ++ ++AR +G+  ++L  LV+ A+ D     +G+      +  +I   P F 
Sbjct: 61  REAERGGAISFQQAREMGIPDQVLAQLVTTASFDHEATRLGVSIGDDNLRQQILGIPAFQ 120

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
           G D  F  + +   L R G+ E E+ D   +  +R  V    + G+   +   +    + 
Sbjct: 121 GIDGNFDREAYAFTLDRIGLTEAEFEDDMREETARALVQSAVMAGVTVPDAYFETLLTYL 180

Query: 187 FENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
            E R V + VL    +   +  P+   L  + +    ++  PE KR++Y           
Sbjct: 181 GEERDVTWAVLERADLDTGLPTPTEEDLRSYHQGNLPSFTTPETKRLTYAWLTPEMIIDT 240

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQG 304
           +E+    L+  YE+  +++  PE R VE+L F +   A+ A   +  G   F  L  ++G
Sbjct: 241 VEVEEQSLRDAYEERIDEFNQPERRLVERLAFADTGTAETAIAGINDGSTDFETLVAQRG 300

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
             L D+ LG  ++E   D+  A  +   A+ GD    +    G  +  ++ I  +   +F
Sbjct: 301 LDLVDVDLGDVARE---DLGTAAEVVFAAQAGDVVGPVETDLGPALFRINAILSAQETAF 357

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
           +E +  + + +   +A   +     R+ + LA G ++++++       ++   +D+    
Sbjct: 358 EEAEPLLRDTLAADRARRVIDSRIDRIADLLAGGATIEDLAAE---TDMEQGQIDWHPGV 414

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
            +G  + A     Q    +   D P        L DG    +++   +    + L+EV  
Sbjct: 415 TEG--IGAYDAFRQAAQAITEDDFP----DVEQLGDGGIFAMRLDRVVDPEIQPLDEVRD 468

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
            V   W+   T   ++ KA  LV +  + G++F D+G
Sbjct: 469 AVLAGWRQQATVAALTEKAEPLVADL-RNGRDFADLG 504


>gi|84515600|ref|ZP_01002962.1| hypothetical protein SKA53_03041 [Loktanella vestfoldensis SKA53]
 gi|84510883|gb|EAQ07338.1| hypothetical protein SKA53_03041 [Loktanella vestfoldensis SKA53]
          Length = 613

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/507 (21%), Positives = 231/507 (45%), Gaps = 26/507 (5%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           W+    ++V    F   GL+  +       T+ +VG + +  +++  +  Q++  +S + 
Sbjct: 12  WIIVGVVLVGLAGFGTGGLTGNI------RTLGTVGDKDITVAAYQRNLDQQIRALSAQF 65

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  ++ ++A++ G+D++ L  +V   TLD     +G+ A    V+  I+    F      
Sbjct: 66  GTQISFQQAQAFGIDRQALSQVVQTRTLDNEAARMGISAGDLAVFDRISAIGAFQSA-GG 124

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F+ D +   L + G +E E+     + L+RT +    V G+  +    D   R+  E R 
Sbjct: 125 FNRDTYRLVLQQSGQSESEFEAEIREDLARTLLQAAIVSGVPGAAASADALVRYVAEARD 184

Query: 192 VDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
           V  + ++   + A +   ++A +T ++E   D +  PE + I+Y        + ++E+++
Sbjct: 185 VTVLRVSADMLTAPVPGATDADITAFYEANGDEFLLPEAREITYAWMTPAMIQDQMEVTD 244

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLSD 309
             ++  Y+     +  PE R VE+L + +   A  A   L  G   F  L  E+G +L+D
Sbjct: 245 LAIETLYQDRIADFVQPERRLVERLNYADPAAAQLAGGRLASGDATFDALVTERGLTLAD 304

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
           + +G   ++ +P  + AD++F+ A  GD       S G  +  V+ +  +  V+  E   
Sbjct: 305 VDMGDLGRDELP-ANTADAVFT-ATPGDVVGPFPTSLGAALFRVNAVLNAQEVTLDEASD 362

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
           D+  ++    A   + +D+ R+ + LA G ++++++ R  +V   L  + +      G  
Sbjct: 363 DLRAELAAEAARSVINDDFDRITDLLAGGATLEDLAERTDLV---LGQISWTPDVTDG-- 417

Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVA---LPDGSYMWVQIKESIPARDRKLEEVLTDV 486
           +AA  Y     FR   +   LS+    A   L DG    +++    PAR   L+++  DV
Sbjct: 418 IAA--YDN---FRAAAE--ALSEGAFPALEVLSDGGVFALRLDSVTPARVPPLQDIRADV 470

Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKE 513
              W+     + + ++A ++  + + +
Sbjct: 471 AARWQLQAQQDALLARAAEIAADLTAD 497


>gi|238795538|ref|ZP_04639053.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia mollaretii ATCC
           43969]
 gi|238720657|gb|EEQ12458.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia mollaretii ATCC
           43969]
          Length = 628

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 145/647 (22%), Positives = 291/647 (44%), Gaps = 61/647 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+   V KI L ++ + F++ G+   L  + GS+   + V  Q++  +    +
Sbjct: 1   MMDNLRAAANNVVLKILLALIMLSFILTGVGSYL--IGGSNDYAAKVNGQEISRAQLEQA 58

Query: 60  WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            + E G + Q++G     + +     + L +++L  LV+   LDQ+ + +GL A   +V 
Sbjct: 59  VQSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174
             I ++P F   DNKF ++ ++  + R G    ++     + L    ++  F   G + P
Sbjct: 119 DAIRQAPYFQ-TDNKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177

Query: 175 ------SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
                 S L+L Q        R V    ++ + + A    ++  L  ++++ K+++ APE
Sbjct: 178 IEAQAMSELILQQ--------REVRLATVDLKALQAQQKVTDEELKAYYDQNKNSFIAPE 229

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
             ++S+I  D    + KI ++ +++ A Y++++  Y  PE R    + F  + EA  A  
Sbjct: 230 QMKVSFIAMDAAAMQDKITVTEEDIAAYYDQHRSSYTQPERRNYSVIQFKTEAEAKVALD 289

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSF 346
            LKKG  F  +A+E+   +     G       P+ + AD +   +L++KG  + V+  S 
Sbjct: 290 ELKKGADFAAMAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLSEKGQLSDVVKSSV 348

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EI 404
           GY+I  +++IKP       EV   +A Q++     EK  + Y  L++ ++   + D   +
Sbjct: 349 GYLIVRLNDIKPEQVKPLSEVHDALAKQVK----QEKAVDAYYALQQKVSEAATSDNESL 404

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGS 462
           +  E+         D+  +D    EV   P   Q +F   + G++     +  V   DG 
Sbjct: 405 ASAEEAAGTKAKQTDWFTRDSIPTEVNFKPVA-QAIFDGGLVGENGAPGSNSDVITVDGD 463

Query: 463 YMWV-----QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
             +V        E I   D+  ++V   VK+     + AE+++    + +L   K+GK  
Sbjct: 464 RAFVIRIDGHKPEGIEPFDQVRDQVAELVKR-----QKAEQLARVDGEKILTALKQGKG- 517

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--------ENGL 569
            +  K  G S      ++R  ++++      +  +F+ P    K  P+        +N +
Sbjct: 518 EEAMKAAGISFGEKKTLSRAPDDDQL-----VQTIFTLPHPQ-KDQPVYGLSQDREDNIV 571

Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
              +  VT  K+ P  E   FI+ + +  +    D+++A L+ Q ++
Sbjct: 572 LIELLSVTPGKL-PEGEMKTFIAKMQEGSSGVTFDALMANLRKQATI 617


>gi|238764856|ref|ZP_04625797.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia kristensenii ATCC
           33638]
 gi|238696963|gb|EEP89739.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia kristensenii ATCC
           33638]
          Length = 627

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 183/387 (47%), Gaps = 14/387 (3%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINSW 60
           ++ +R A+   V KI L ++ + F++ G+   L  + GS+   + V  Q++       + 
Sbjct: 1   MDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRGQLEQAV 58

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E G + Q++G     + +     + L +++L  LV+   LDQ+ + +GL A   +V  
Sbjct: 59  QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRPS 175
            I ++P F   D KF +  ++  + R G    ++     + L    ++  F   G + P 
Sbjct: 119 AIRQAPYFQ-TDGKFDNSKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP- 176

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            +          + R V    L+ + + A    ++  L  ++++ K+++ APE  +IS+I
Sbjct: 177 -IEAQAMSELILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFI 235

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
             D    + KI I+ +++ A YE++K  Y  PE R    + F  + EA  A   LKKG  
Sbjct: 236 AMDAAAMQDKITITEEDIAAYYEQHKSTYTQPEQRNYSVIQFKTEAEAKTALDELKKGAD 295

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHV 353
           F  +A+E+   +     G       P+ + AD +   +L +KG  + V+  S GY+I  +
Sbjct: 296 FAAMAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSVGYLIVRL 354

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKA 380
           ++IKP+      EV   +A Q++  KA
Sbjct: 355 NDIKPAQVKPLSEVHDALAKQVKQEKA 381


>gi|73666959|ref|YP_302975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia canis str.
           Jake]
 gi|72394100|gb|AAZ68377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia canis str.
           Jake]
          Length = 630

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 139/652 (21%), Positives = 280/652 (42%), Gaps = 65/652 (9%)

Query: 9   SRTWVAKIFLVVLFVPFLIWGLSDALF--SVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           S+    K  L++L    +      + F  + +    V  +G +K+    + N++  EL  
Sbjct: 3   SKGLFVKPLLIILVCSLVFIAFGTSFFPGNFNNDKYVAKIGHEKLSLQDYTNAYHDELRY 62

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           I Q +   +  E+     +   +L+ L+    L +F + + L+     +   I     F 
Sbjct: 63  IQQILNRPLTEEQIAQFNIKLSVLNKLIENKVLTKFTDSLNLKVGEKSILSHIKSIKFFQ 122

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-----LLDQ 181
            ++  F    F   L+  G+ E+ YI+   K      ++     G + + +     L+ Q
Sbjct: 123 DENGNFDKTKFNIGLSNAGLTERLYINKLEKAFPVAMLMSCLFSGTQNTYVKYHPELIKQ 182

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIAD---PSNAVLTQWFEKYKD--NYRAPEYKRISYIL 236
             +   + R++D I ++    P+  D   PS   L + +E+ +   N   PE + I Y+ 
Sbjct: 183 ILQNLHQARTIDLIEIS----PSTNDISVPSLDELKKLYEEKRKSGNLTFPENRVIEYLT 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
            +      +I ++ +++  E +  +      E R +  LVF  + EA+ A ++L +G  F
Sbjct: 239 INYKNFINQINVTQEDIDNEIKTEE----LDEQRDILNLVFSTKNEAEAALKALNEGTDF 294

Query: 297 IQLAEEQGKSLSD-ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
             +      + +D I+L +  K  +P+  +   +FSL K+GD +P++H  FG+ I  + +
Sbjct: 295 NDVVTNIAHTTTDNITLNNIVKNTLPN-DIRGKVFSL-KEGDISPILHSMFGWHIIKIKS 352

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I    T   QE+ + IA  ++  KA   +  + + + + +  G S++EI++   + SI  
Sbjct: 353 IHKISTEDLQELSEKIAQNIKKKKAISLLTTEIESINDKINNGASINEIAKLYNL-SIKT 411

Query: 416 PLVDFAGKDVKGKEV-AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
              D +GKD+ G ++  +    + ++   F     L+K       D  +  V + +  P+
Sbjct: 412 INTDISGKDLSGNKIKMSESNADAIILAAFSAQ--LNKPSNFTDNDDYFFSVNVTKVEPS 469

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           R++  +E    +  +W+    ++++S    ++V++  K G +      N+   LL +NQ 
Sbjct: 470 REKTFDESKEQLVYEWQNDLKSQKLSKLTQEVVVKL-KSGIDIH----NIDGVLLNSNQ- 523

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMV-KCFPIENG-LSYVVFKVTNSKVGPVQEKDKFIS 592
             M   N     D   Q +  P ++V + F ++ G +S      TNS      E+   I+
Sbjct: 524 --MVYRNSVAAVDNPGQNY--PTDLVDEIFNLKKGEISKSYQSSTNS-----SEQKMLIA 574

Query: 593 YLTQMMNKD---------------------LLDSVIAYLKSQYSVTVHDNLI 623
            L  + N D                     L + +I YL  +YSV ++ NLI
Sbjct: 575 ILKDIKNADQVSNVDFKNIQEKIANDNLESLKNQLITYLTKKYSVKINQNLI 626


>gi|190570945|ref|YP_001975303.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190357217|emb|CAQ54634.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 599

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 135/577 (23%), Positives = 264/577 (45%), Gaps = 68/577 (11%)

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  V+ E+ + +  D  +L+ L+    L   I ++GL+     +   I  +  F     +
Sbjct: 63  GSDVSKEQVKKLKYD--LLNALIEQKLLFNLISELGLKVGEESIKSHIKNTKYFQDDKGE 120

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL-------DQAKR 184
           F H+ F   L    I EKEYI+   K+L       MF+  +   N  +       +Q  +
Sbjct: 121 FDHNKFHQTLNSLHITEKEYIEKLEKILPAM----MFMTSLFKDNYPVTFGEGVDEQIYK 176

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
             ++ R VD + +    +  + +P +  L   +E+ K N+  PEY+   YI  D    E 
Sbjct: 177 NRYQTRVVDIVKITEDAITDVPEPDDQALLDLYERNKSNFYYPEYRTAQYISLDQKYFED 236

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303
           +I IS++E+ +  E  + K      R +  ++FP +++A+ A ++L++ K  F Q+ EE 
Sbjct: 237 QIRISDEEVDSIIEHQELK----NQRDIFNVIFPTKEKAEIARRALEESKASFEQIIEEF 292

Query: 304 GK-SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
            K  L +  + + +K+++P+ ++ + +F+L K G+ + V+  +FG+ +  V +I      
Sbjct: 293 NKVKLDETRVNNITKDFLPE-NMREKVFAL-KTGEVSEVLTSNFGWHVIKVESIHQISDE 350

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
              ++KKDI + +   K+ EKV +   ++   +  G +++EIS    +    +  VD +G
Sbjct: 351 DLVDLKKDIRSVLTNQKSFEKVNDFINQVNYKIYNGATIEEISNNYNLPIQTIGPVDASG 410

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
           KD  G EV         +  +F ++    K +   + D + + V+I + +P + +  EE 
Sbjct: 411 KDQSGNEVGN---SSDFISFIFSREKD-QKSYFKGVGD-TVVGVKISDIVPPKLQNFEES 465

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
                K W++    E +     ++ ++  ++     D+ +  G  L+   QI R + +N 
Sbjct: 466 RESAIKLWRSEFIKERMFKMGQEVAVQLREKT----DLEEMQGIKLVKGQQIQR-NEQNY 520

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK-FISYLTQMMNK- 600
            F +  I ++F+                    K TNS   P+Q  ++  I  L QM +  
Sbjct: 521 PFSF--IEEIFN-------------------MKTTNSVTDPIQYNNEIIIGVLKQMHSSN 559

Query: 601 ---DLLDS-----------VIAYLKSQYSVTVHDNLI 623
              ++LD+           +I+YLKS+Y V V+  +I
Sbjct: 560 GKLNMLDTGKRVMISLKEQLISYLKSKYRVEVNHAMI 596


>gi|310815590|ref|YP_003963554.1| peptidyl-prolyl cis-trans isomerase D, putative [Ketogulonicigenium
           vulgare Y25]
 gi|308754325|gb|ADO42254.1| peptidyl-prolyl cis-trans isomerase D, putative [Ketogulonicigenium
           vulgare Y25]
          Length = 612

 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 115/509 (22%), Positives = 224/509 (44%), Gaps = 24/509 (4%)

Query: 24  PFLIWG---LSDALFSVSG---SSTVVSVGR---QKVPFSSFINSWKQELGMISQKIGFV 74
           PF+  G   ++  L    G   S TV +VG+   + V    +  + +Q L  + Q  G  
Sbjct: 9   PFVWAGFILIAGGLMITGGLGLSGTVRNVGKVGDKTVTALEYQGAMQQGLQQMRQMFGNT 68

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           +   + + +G +    + LV    L+     IGL      V  +I +   F G    FS 
Sbjct: 69  LTFAQFQQMGGEAMAREQLVQERALENEASRIGLSVGDLYVARQIQQISAFQGLTGGFSL 128

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           + + + L + G+ E+++ D     ++   +     G +    +  +   RF  E R + +
Sbjct: 129 ETYRAALRQVGLAERQFEDAQRDAIASGLLSSAIAGDLTMPAIYAETLARFRGERRVITW 188

Query: 195 IVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
             +   +V   I  P+   L  + + + D +  PE +R++Y         + IE+S DE+
Sbjct: 189 AAVTAANVTTDIPAPTEEDLQAYHDSHPDVFTTPETRRVTYAALTPEMAAETIEVSEDEI 248

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISL 312
           +A Y++  + Y  PE R V++L F N  +A  A   ++ G+  F  LA E G SL +I  
Sbjct: 249 RALYDQRIDSYIVPERRIVDRLTFNNDADATAALARIQSGEITFTDLANEMGFSLEEIDQ 308

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           G  ++  + +   A  +F+ A  GD    +   FG V+  V+    +    +  V+  + 
Sbjct: 309 GEMTEAALGEGGAA--VFA-AATGDTVGPVPSRFGPVLYRVNVDLAAEETPYDAVRDTLR 365

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
           N++  ++A   + ++   L + +A G  +++I     + S  L   D+   + +G   A 
Sbjct: 366 NELAASRAGRVIAQEKASLTDLVAGGAQIEDIVNLSDLRSGTL---DWQEGNTEGM-AAY 421

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
            P++  +     G    +     V LPDG    +++ E +P R + L+E+    +  W+ 
Sbjct: 422 EPFRAAIAAAEIGAFPAI-----VDLPDGGIFVLRLDEIVPPRVQTLDEMRAYAEVMWRF 476

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
             T + V+++A +L  E  + G  F ++G
Sbjct: 477 QATQDAVATEAARLA-EAVEGGATFEELG 504


>gi|82775652|ref|YP_401999.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella
           dysenteriae Sd197]
 gi|81239800|gb|ABB60510.1| putative protease maturation protein [Shigella dysenteriae Sd197]
          Length = 623

 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 143/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDNLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA ++R     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVR----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|157159968|ref|YP_001457286.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           HS]
 gi|312970538|ref|ZP_07784719.1| PPIC-type PPIASE domain protein [Escherichia coli 1827-70]
 gi|157065648|gb|ABV04903.1| peptidylprolyl isomerase [Escherichia coli HS]
 gi|310337187|gb|EFQ02325.1| PPIC-type PPIASE domain protein [Escherichia coli 1827-70]
          Length = 623

 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 143/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  QK+    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQKISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|238754239|ref|ZP_04615596.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia ruckeri ATCC 29473]
 gi|238707486|gb|EEP99846.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia ruckeri ATCC 29473]
          Length = 627

 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 154/647 (23%), Positives = 287/647 (44%), Gaps = 61/647 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+   V KI L ++ + F++ G+   L  + GS+   + V  Q++  +    S
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGGYL--IGGSNDYAAKVNGQEISRAQLEQS 58

Query: 60  WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            + E   + Q++G    V+         L ++IL  L++   LDQ+ + +GL A   +V 
Sbjct: 59  MQSERSRLQQQLGEQFSVLAGNEGYMQQLRQQILGQLINNMLLDQYAKQLGLSASDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174
             I + P F   DNKF ++ ++  + R G    ++     + L    ++  F   G   P
Sbjct: 119 DSIRQLPYFQ-TDNKFDNNKYLELVNRMGYTPDQFAQIQRQQLINQQLLQAFSETGFALP 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           +            + R V    L+ + + A    ++  L  ++E+ ++++ APE  +IS+
Sbjct: 178 AEA--QAMSELILQQREVRLATLDLKALQAKQTVTDEELKAYYEQNRNSFIAPEEMKISF 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           I  D    ++KI ++ +++   YE+++  +  PE R    + F N+ +A  A   LK G 
Sbjct: 236 IEMDAAAMQEKITVTEEDIATYYEQHRSSFTQPERRNYSVIQFKNEADAKTALAELKNGA 295

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAH 352
            F  LA+E+   +     G       P+ + AD +   +L +KG  + V+  S GY+I  
Sbjct: 296 DFTTLAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSVGYLIVR 354

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           +++IKP       EV   +A +++     EK  + Y  L++ ++   + D     E + S
Sbjct: 355 LNDIKPEQVKPLSEVHDALATKVK----QEKAVDAYYALQQKVSEAATSD----NESLAS 406

Query: 413 IDLPLVDFAGKDVKGKEVA-----AIP----YKE--QLLFR--VFGKDDPLSKDHTVALP 459
            +    + AG   K K+ A     A+P    YK   Q +F   + G++     +  V   
Sbjct: 407 AE----EAAGS--KAKQTAWFTRDAVPAQLNYKPVIQAIFEGALVGENGAPGSNSDVITV 460

Query: 460 DGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
           DG   +V +I    P   +  ++V   V +  K  K AE+ +    + +L   K+GK   
Sbjct: 461 DGDRAFVIRIDGHKPEGVQPFDQVRDQVAELVKRQK-AEQQARVDGEKILTALKQGKG-E 518

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPI--------ENGL 569
           +  K  G S      I R        G D ++Q VF+ P   V+  P+        +N +
Sbjct: 519 EAMKAAGLSFGEKKMIARAP------GDDQLAQTVFALPHPQVEK-PVYGLSQDRQDNIV 571

Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
              +  VT  K+ P  E   F + + + +N   LD++IA L  Q ++
Sbjct: 572 LIELLSVTPGKL-PEDEMPNFTTKMAEGINGIALDALIANLHKQATI 617


>gi|213019460|ref|ZP_03335266.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212994882|gb|EEB55524.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 578

 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 135/577 (23%), Positives = 264/577 (45%), Gaps = 68/577 (11%)

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  V+ E+ + +  D  +L+ L+    L   I ++GL+     +   I  +  F     +
Sbjct: 42  GSDVSKEQVKKLKYD--LLNALIEQKLLFNLISELGLKVGEESIKSHIKNTKYFQDDKGE 99

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL-------DQAKR 184
           F H+ F   L    I EKEYI+   K+L       MF+  +   N  +       +Q  +
Sbjct: 100 FDHNKFHQTLNSLHITEKEYIEKLEKILPAM----MFMTSLFKDNYPVTFGEGVDEQIYK 155

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
             ++ R VD + +    +  + +P +  L   +E+ K N+  PEY+   YI  D    E 
Sbjct: 156 NRYQTRVVDIVKITEDAITDVPEPDDQALLDLYERNKSNFYYPEYRTAQYISLDQKYFED 215

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303
           +I IS++E+ +  E  + K      R +  ++FP +++A+ A ++L++ K  F Q+ EE 
Sbjct: 216 QIRISDEEVDSIIEHQELK----NQRDIFNVIFPTKEKAEIARRALEESKASFEQIIEEF 271

Query: 304 GK-SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
            K  L +  + + +K+++P+ ++ + +F+L K G+ + V+  +FG+ +  V +I      
Sbjct: 272 NKVKLDETRVNNITKDFLPE-NMREKVFAL-KTGEVSEVLTSNFGWHVIKVESIHQISDE 329

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
              ++KKDI + +   K+ EKV +   ++   +  G +++EIS    +    +  VD +G
Sbjct: 330 DLVDLKKDIRSVLTNQKSFEKVNDFINQVNYKIYNGATIEEISNNYNLPIQTIGPVDASG 389

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
           KD  G EV         +  +F ++    K +   + D + + V+I + +P + +  EE 
Sbjct: 390 KDQSGNEVGN---SSDFISFIFSREKD-QKSYFKGVGD-TVVGVKISDIVPPKLQNFEES 444

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
                K W++    E +     ++ ++  ++     D+ +  G  L+   QI R + +N 
Sbjct: 445 RESAIKLWRSEFIKERMFKMGQEVAVQLREKT----DLEEMQGIKLVKGQQIQR-NEQNY 499

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK-FISYLTQMMNK- 600
            F +  I ++F+                    K TNS   P+Q  ++  I  L QM +  
Sbjct: 500 PFSF--IEEIFN-------------------MKTTNSVTDPIQYNNEIIIGVLKQMHSSN 538

Query: 601 ---DLLDS-----------VIAYLKSQYSVTVHDNLI 623
              ++LD+           +I+YLKS+Y V V+  +I
Sbjct: 539 GKLNMLDTGKRVMISLKEQLISYLKSKYRVEVNHAMI 575


>gi|218693904|ref|YP_002401571.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           55989]
 gi|218350636|emb|CAU96328.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           55989]
          Length = 623

 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 143/652 (21%), Positives = 287/652 (44%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L S  G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIS-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAQQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|332341805|gb|AEE55139.1| peptidyl-prolyl cis-trans isomerase PpiD [Escherichia coli UMNK88]
          Length = 623

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 142/652 (21%), Positives = 287/652 (44%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P ++K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEEQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|330859944|emb|CBX70273.1| peptidyl-prolyl cis-trans isomerase D [Yersinia enterocolitica
           W22703]
          Length = 628

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 184/388 (47%), Gaps = 14/388 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+   V KI L ++ + F++ G+   L  + GS+   + V  Q++  +    +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRAQLEQA 58

Query: 60  WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            + E   + Q++G     + +     + L +++L  LV+   LDQ+ + +GL A   +V 
Sbjct: 59  VQSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174
             I ++P F   D KF ++ ++  + R G    ++     + L    ++  F   G + P
Sbjct: 119 DAIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
                  A     + R V    L+ + + A    ++  L  ++++ K+++ APE  +IS+
Sbjct: 178 VEAQAMSA--LILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISF 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           I  D    + KI ++ +++ A Y+++K  Y  PE R    + F  + EA  A   LKKG 
Sbjct: 236 IAMDAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGA 295

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAH 352
            F  +A+E+   +     G       P+ + AD +   +L +KG  + V+  S GY+I  
Sbjct: 296 DFAAIAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSVGYLIVR 354

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKA 380
           ++ IKP+      EV   +A Q++  KA
Sbjct: 355 LNGIKPAQVKPLSEVHDALAKQVKQEKA 382


>gi|332160753|ref|YP_004297330.1| peptidyl-prolyl cis-trans isomerase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664983|gb|ADZ41627.1| peptidyl-prolyl cis-trans isomerase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 628

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 184/388 (47%), Gaps = 14/388 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+   V KI L ++ + F++ G+   L  + GS+   + V  Q++  +    +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRAQLEQA 58

Query: 60  WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            + E   + Q++G     + +     + L +++L  LV+   LDQ+ + +GL A   +V 
Sbjct: 59  VQSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174
             I ++P F   D KF ++ ++  + R G    ++     + L    ++  F   G + P
Sbjct: 119 DAIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
                  A     + R V    L+ + + A    ++  L  ++++ K+++ APE  +IS+
Sbjct: 178 VEAQAMSA--LILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISF 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           I  D    + KI ++ +++ A Y+++K  Y  PE R    + F  + EA  A   LKKG 
Sbjct: 236 IAMDAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGA 295

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAH 352
            F  +A+E+   +     G       P+ + AD +   +L +KG  + V+  S GY+I  
Sbjct: 296 DFAAIAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSVGYLIVR 354

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKA 380
           ++ IKP+      EV   +A Q++  KA
Sbjct: 355 LNGIKPAQVKPLSEVHDALAKQVKQEKA 382


>gi|318604634|emb|CBY26132.1| peptidyl-prolyl cis-trans isomerase ppiD [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 628

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 184/388 (47%), Gaps = 14/388 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+   V KI L ++ + F++ G+   L  + GS+   + V  Q++  +    +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRAQLEQA 58

Query: 60  WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            + E   + Q++G     + +     + L +++L  LV+   LDQ+ + +GL A   +V 
Sbjct: 59  VQSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174
             I ++P F   D KF ++ ++  + R G    ++     + L    ++  F   G + P
Sbjct: 119 DAIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
                  A     + R V    L+ + + A    ++  L  ++++ K+++ APE  +IS+
Sbjct: 178 VEAQAMSA--LILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISF 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           I  D    + KI ++ +++ A Y+++K  Y  PE R    + F  + EA  A   LKKG 
Sbjct: 236 IAMDAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGA 295

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAH 352
            F  +A+E+   +     G       P+ + AD +   +L +KG  + V+  S GY+I  
Sbjct: 296 DFAAIAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSVGYLIVR 354

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKA 380
           ++ IKP+      EV   +A Q++  KA
Sbjct: 355 LNGIKPAQVKPLSEVHDALAKQVKQEKA 382


>gi|56416723|ref|YP_153797.1| hypothetical protein AM516 [Anaplasma marginale str. St. Maries]
 gi|222475088|ref|YP_002563503.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
           str. Florida]
 gi|56387955|gb|AAV86542.1| hypothetical protein AM516 [Anaplasma marginale str. St. Maries]
 gi|222419224|gb|ACM49247.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
           str. Florida]
          Length = 670

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 143/644 (22%), Positives = 280/644 (43%), Gaps = 52/644 (8%)

Query: 12  WVAKIFLVVL--FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           +V  +   VL  FV F+ +G        +    V  VG   +    +  +++ EL  I  
Sbjct: 46  FVGAVLAAVLCAFV-FVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELSYIES 104

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
            +   ++ +  +  G+ +  L  +V    L++F +++ L   +  +   I   P+F  K 
Sbjct: 105 LVHQKLSEDDIKRFGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMFQDKS 164

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLS-----------RTDVVGMFVGGMRPSNLL 178
            K     F   LA  G+ E  YI      L              +V   +  G     L 
Sbjct: 165 GKLDEQRFKDLLADAGMTEASYIGKVRDSLPAFVLSECIFPRSGEVYSQYYDGFAQDVL- 223

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRISYIL 236
                R   ++R+VD + ++   V   + P+++ L   + +   N     PEY+   Y++
Sbjct: 224 -----RGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSAEYMI 278

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
               +   ++  SNDE+++E  KN E +   + R V  LVFP++ EA  A++++K+GK F
Sbjct: 279 VSEDDALDEVTASNDEVESEI-KNSELH---DQRDVLNLVFPSESEASAAYKAIKEGKAF 334

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             + ++ G ++ +++L + +KE +P + + +++F L  +G+ + V     G+ +  + + 
Sbjct: 335 EAVVKDLGTTVEEVTLRNVTKELLP-IEVRNTVFDL-NEGEVSGVFRSVVGWHVMKILSK 392

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSID- 414
            P      +++K+ +A  ++  KA E      ++  E ++ G TS  E++   K  +I  
Sbjct: 393 HPISAKDLKKLKEKVAMSIKRQKARELFSASIRKANEMISHGATSFSEVADVFKKPAIGA 452

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPD------GSYMWVQ 467
           L   D  G+D  GK   +  Y E+  F  + G   PL+    V  P        +Y  V 
Sbjct: 453 LKDFDSNGQDSTGK---SHTYAEESSFPGIVGALPPLAFSSQVGKPSHFVSIGNAYFSVI 509

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           +    P+R R  +E  + +   WK      E+   A+ L  +  K G+N    G  +G  
Sbjct: 510 VTGVTPSRTRTFDESKSLLLDKWKNAFVVGEMLKLASDLTAKL-KAGEN---PGSAVGIV 565

Query: 528 LLTTNQINRMDNENKFFGY--DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV---G 582
                 I+R++ +     Y  D + QVF   +  V    I+ G +  +F  T   +   G
Sbjct: 566 TKKNENISRVNRKKGSSNYPEDLVDQVFEMRIGDVGEGVIDQGANK-IFIATLKDIKTPG 624

Query: 583 PVQEKD--KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            V EK+  +F ++ T      +   ++++L ++Y V ++  L++
Sbjct: 625 QVNEKELKEFQAHFTSSAISSIRRQLLSHLTNKYGVKINKKLLE 668


>gi|260866602|ref|YP_003233004.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str.
           11128]
 gi|257762958|dbj|BAI34453.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str.
           11128]
 gi|323178290|gb|EFZ63868.1| PPIC-type PPIASE domain protein [Escherichia coli 1180]
          Length = 623

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 141/654 (21%), Positives = 285/654 (43%), Gaps = 60/654 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF + ++   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSLYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKVVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV--LEYSKEGKNFRDIGKNL 524
           +I E  P   + L +V   VK   +  K  ++    A +L+  L+  K  +  +  G   
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKF 526

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VV 573
           G   + +             G D ISQ  F+ P       P ++  SY          V+
Sbjct: 527 GEPKILSRS-----------GRDPISQAAFTLP------LPAKDKPSYGMATDMQGNVVL 569

Query: 574 FKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 570 LALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|300924168|ref|ZP_07140160.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
 gi|301049648|ref|ZP_07196597.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
 gi|300298585|gb|EFJ54970.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
 gi|300419621|gb|EFK02932.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
          Length = 623

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-GMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|315499883|ref|YP_004088686.1| ppic-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
           excentricus CB 48]
 gi|315417895|gb|ADU14535.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
           excentricus CB 48]
          Length = 642

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 118/558 (21%), Positives = 245/558 (43%), Gaps = 15/558 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+   R+ +++   KI +  L + F ++G+ D LFS   S  VV  G ++     +   +
Sbjct: 1   MISSFRQFTKSLTFKILMAALILSFAVFGMHD-LFSRPSSRNVVDAGDRQTTTDDYRRQF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            Q      Q+ G  +  E A   GL  +I++ L    ++  ++  +GL      V  +IA
Sbjct: 60  DQWKTGAEQQSGQTLTYEDAVKQGLHVRIMEELADMDSVSAWLVKVGLRPSAKVVTDQIA 119

Query: 121 RSPLFHGK-DNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           + P+F      KF    +   LA +  ++E ++    +  ++    +   V G++P  + 
Sbjct: 120 KYPIFFDSITGKFDKAKYQQELATQMKMSETKFEQIISDDIANRQFIEASVAGLKPPRIY 179

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                 F  E R    +V+   ++     P++  L ++++  K+  R PE ++ + + F 
Sbjct: 180 AALQSAFASETRDTTLLVVTPDNIEKPGQPTDVELKKFYDDNKERLRRPELRQFTVVSFA 239

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
             +   K+ +   EL+  YE  ++   +PE RT  Q+  P+QK A+   Q+L+ G     
Sbjct: 240 PGDFASKVTVDEAELKKLYEFRRDTLSNPETRTFVQVTVPDQKAAEAVAQALRSGTDPKT 299

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
            A+    ++  I+  +  K  + D  +AD+ F+L K+G+ +  I GS G  +  VS I  
Sbjct: 300 AAKANKGTV--IAYDAKPKTAVADAKVADAAFAL-KQGEVSGPIQGSLGLAVVKVSGITA 356

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
           +    F  V+  +  + +  KA +   +  +  E+  + G      +++  +  I+LP +
Sbjct: 357 ASVTGFDTVRGQLEAEYKADKAKDLAYKASEVFEKERSAGADFLAAAQKAGVRVINLPPM 416

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA-LPDGSYMWVQIKESIPARDR 477
              G+   G+     P    +L   F  D P   +  V  L +G Y  +++ E +P+   
Sbjct: 417 TAEGQMGNGQPFQYAP----ILKAAF--DQPKGGETDVTELGNGEYFALRVNEVLPSEVP 470

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
            L+ +   + + W+     + V++K+ +      K G++   +  ++G  + T   + R 
Sbjct: 471 ALDTIKPQMIQAWQQKTAGDRVAAKSEEAAARLRK-GESLEAVASSMGLKVETRAGLARQ 529

Query: 538 DNENKFFGYDGISQVFSG 555
               +  G +   ++FS 
Sbjct: 530 TAPQQ-VGPELTGRIFSA 546


>gi|300997370|ref|ZP_07181710.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
 gi|300304189|gb|EFJ58709.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
          Length = 623

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWVEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|209917658|ref|YP_002291742.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           SE11]
 gi|218553008|ref|YP_002385921.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli IAI1]
 gi|293418512|ref|ZP_06660947.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B088]
 gi|300818227|ref|ZP_07098438.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
 gi|209910917|dbj|BAG75991.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE11]
 gi|218359776|emb|CAQ97317.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           IAI1]
 gi|291325040|gb|EFE64455.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B088]
 gi|300529118|gb|EFK50180.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
 gi|323184728|gb|EFZ70099.1| PPIC-type PPIASE domain protein [Escherichia coli 1357]
 gi|323945347|gb|EGB41403.1| ppic-type ppiase domain-containing protein [Escherichia coli H120]
 gi|324016698|gb|EGB85917.1| PPIC-type PPIASE domain protein [Escherichia coli MS 117-3]
          Length = 623

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 141/654 (21%), Positives = 284/654 (43%), Gaps = 60/654 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV--LEYSKEGKNFRDIGKNL 524
           +I E  P   + L +V   VK   +  K  ++    A +L+  L+  K  +  +  G   
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKF 526

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VV 573
           G   + +             G D ISQ  F+ P       P ++  SY          V+
Sbjct: 527 GEPKILSRS-----------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVL 569

Query: 574 FKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 570 LALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|323976074|gb|EGB71167.1| ppic-type ppiase domain-containing protein [Escherichia coli
           TW10509]
          Length = 623

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 141/652 (21%), Positives = 287/652 (44%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ D+A +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDVAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P ++K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEEQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|281177612|dbj|BAI53942.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE15]
          Length = 623

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|300903291|ref|ZP_07121219.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
 gi|301301592|ref|ZP_07207727.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
 gi|300404586|gb|EFJ88124.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
 gi|300843089|gb|EFK70849.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
 gi|315256269|gb|EFU36237.1| PPIC-type PPIASE domain protein [Escherichia coli MS 85-1]
          Length = 623

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QTAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|293413696|ref|ZP_06656345.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B185]
 gi|291433754|gb|EFF06727.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B185]
          Length = 623

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRARYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKQKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|323191361|gb|EFZ76624.1| PPIC-type PPIASE domain protein [Escherichia coli RN587/1]
          Length = 623

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGLMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|218549891|ref|YP_002383682.1| peptidyl-prolyl cis-trans isomerase [Escherichia fergusonii ATCC
           35469]
 gi|218357432|emb|CAQ90071.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia
           fergusonii ATCC 35469]
          Length = 638

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 188/394 (47%), Gaps = 28/394 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 16  MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAF 74

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  D+ L     +V 
Sbjct: 75  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVK 133

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  + + L + G++     D Y + L         + G+  ++
Sbjct: 134 QAIFATPAFQ-VDGKFDNSRYNAILNQMGMS----ADQYAQALRNQLTTQQLINGIAGTD 188

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++          S+A +T +++++K+N+  PE  R+
Sbjct: 189 FMLKGETDELAALVSQQRVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRV 248

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI+ D    ++   +S+ ++QA Y+++++++  P+      +    + EA     +L  
Sbjct: 249 SYIMLDAANIQQP--VSDADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNN 306

Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           G  F +LA+E  KS   IS      LG       P   L D+   L  KG  + VI  S 
Sbjct: 307 GGDFAELAKE--KSADIISARNGGDLGWLEDSTTPQ-ELKDA--GLKDKGQLSGVIKSSV 361

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           G+++  + +++P+   +  EV+ DIA +++  KA
Sbjct: 362 GFLVVRLDDVQPAKVKTLAEVRDDIAAKVKHEKA 395


>gi|215485522|ref|YP_002327953.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215263594|emb|CAS07924.1| peptidyl-prolyl cis-trans isomerase D (rotamase D) [Escherichia
           coli O127:H6 str. E2348/69]
          Length = 623

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKNLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|16128426|ref|NP_414975.1| periplasmic folding chaperone, has an inactive PPIase domain
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26246452|ref|NP_752491.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           CFT073]
 gi|74311016|ref|YP_309435.1| peptidyl-prolyl cis-trans isomerase [Shigella sonnei Ss046]
 gi|82542929|ref|YP_406876.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella boydii
           Sb227]
 gi|89107311|ref|AP_001091.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K-12
           substr. W3110]
 gi|91209515|ref|YP_539501.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli UTI89]
 gi|110640702|ref|YP_668430.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           536]
 gi|117622701|ref|YP_851614.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           APEC O1]
 gi|170021186|ref|YP_001726140.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           ATCC 8739]
 gi|170080027|ref|YP_001729347.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188496348|ref|ZP_03003618.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 53638]
 gi|191173673|ref|ZP_03035197.1| peptidylprolyl isomerase [Escherichia coli F11]
 gi|193067528|ref|ZP_03048495.1| peptidylprolyl isomerase [Escherichia coli E110019]
 gi|218557351|ref|YP_002390264.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           S88]
 gi|218688305|ref|YP_002396517.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ED1a]
 gi|218703725|ref|YP_002411244.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli UMN026]
 gi|227884548|ref|ZP_04002353.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           83972]
 gi|237707564|ref|ZP_04538045.1| peptidyl-prolyl cis-trans isomerase [Escherichia sp. 3_2_53FAA]
 gi|238899729|ref|YP_002925525.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           BW2952]
 gi|256023940|ref|ZP_05437805.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia sp.
           4_1_40B]
 gi|293403562|ref|ZP_06647653.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli FVEC1412]
 gi|293408591|ref|ZP_06652430.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298379174|ref|ZP_06989055.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli FVEC1302]
 gi|300900512|ref|ZP_07118679.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
 gi|300918176|ref|ZP_07134783.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
 gi|300947906|ref|ZP_07162054.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
 gi|300958009|ref|ZP_07170173.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
 gi|300988004|ref|ZP_07178484.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
 gi|301025663|ref|ZP_07189181.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
 gi|301330692|ref|ZP_07223294.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
 gi|301647367|ref|ZP_07247179.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
 gi|306813091|ref|ZP_07447284.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           NC101]
 gi|307137086|ref|ZP_07496442.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           H736]
 gi|307312181|ref|ZP_07591817.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W]
 gi|309794826|ref|ZP_07689247.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
 gi|312964534|ref|ZP_07778790.1| PPIC-type PPIASE domain protein [Escherichia coli 2362-75]
 gi|331640961|ref|ZP_08342096.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H736]
 gi|331651379|ref|ZP_08352404.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli M718]
 gi|331656498|ref|ZP_08357460.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA206]
 gi|331661822|ref|ZP_08362745.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA143]
 gi|331681836|ref|ZP_08382469.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H299]
 gi|83288412|sp|P0ADY2|PPID_ECOL6 RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
 gi|83288413|sp|P0ADY1|PPID_ECOLI RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
 gi|26106850|gb|AAN79035.1|AE016756_218 Peptidyl-prolyl cis-trans isomerase D [Escherichia coli CFT073]
 gi|1580712|dbj|BAA11645.1| YbaU [Escherichia coli W3110]
 gi|1773125|gb|AAB40197.1| similar to H. influenzae HI1004 [Escherichia coli]
 gi|1786645|gb|AAC73544.1| periplasmic folding chaperone, has an inactive PPIase domain
           [Escherichia coli str. K-12 substr. MG1655]
 gi|73854493|gb|AAZ87200.1| putative protease maturation protein [Shigella sonnei Ss046]
 gi|76365131|gb|ABA42059.1| peptidyl-prolyl isomerase [Escherichia coli]
 gi|81244340|gb|ABB65048.1| putative protease maturation protein [Shigella boydii Sb227]
 gi|85674581|dbj|BAE76221.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K12
           substr. W3110]
 gi|91071089|gb|ABE05970.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli UTI89]
 gi|110342294|gb|ABG68531.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 536]
 gi|115511825|gb|ABI99899.1| peptidyl-prolyl isomerase [Escherichia coli APEC O1]
 gi|169756114|gb|ACA78813.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           ATCC 8739]
 gi|169887862|gb|ACB01569.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188491547|gb|EDU66650.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 53638]
 gi|190906031|gb|EDV65646.1| peptidylprolyl isomerase [Escherichia coli F11]
 gi|192958940|gb|EDV89376.1| peptidylprolyl isomerase [Escherichia coli E110019]
 gi|218364120|emb|CAR01785.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           S88]
 gi|218425869|emb|CAR06675.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           ED1a]
 gi|218430822|emb|CAR11696.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           UMN026]
 gi|222032236|emb|CAP74975.1| Peptidyl-prolyl cis-trans isomerase D [Escherichia coli LF82]
 gi|226898774|gb|EEH85033.1| peptidyl-prolyl cis-trans isomerase [Escherichia sp. 3_2_53FAA]
 gi|227838634|gb|EEJ49100.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           83972]
 gi|238861991|gb|ACR63989.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           BW2952]
 gi|260450372|gb|ACX40794.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           DH1]
 gi|291429415|gb|EFF02435.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli FVEC1412]
 gi|291471769|gb|EFF14252.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294490510|gb|ADE89266.1| peptidylprolyl isomerase [Escherichia coli IHE3034]
 gi|298280287|gb|EFI21791.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli FVEC1302]
 gi|299880017|gb|EFI88228.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
 gi|300315276|gb|EFJ65060.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
 gi|300355993|gb|EFJ71863.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
 gi|300407556|gb|EFJ91094.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
 gi|300414627|gb|EFJ97937.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
 gi|300452506|gb|EFK16126.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
 gi|300843353|gb|EFK71113.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
 gi|301074512|gb|EFK89318.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
 gi|305853854|gb|EFM54293.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           NC101]
 gi|306907683|gb|EFN38185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W]
 gi|307552348|gb|ADN45123.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ABU 83972]
 gi|307628089|gb|ADN72393.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           UM146]
 gi|308121479|gb|EFO58741.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
 gi|309700702|emb|CBI99998.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ETEC
           H10407]
 gi|312290768|gb|EFR18645.1| PPIC-type PPIASE domain protein [Escherichia coli 2362-75]
 gi|312945019|gb|ADR25846.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315059721|gb|ADT74048.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           W]
 gi|315135123|dbj|BAJ42282.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli DH1]
 gi|315289841|gb|EFU49231.1| PPIC-type PPIASE domain protein [Escherichia coli MS 110-3]
 gi|315294225|gb|EFU53576.1| PPIC-type PPIASE domain protein [Escherichia coli MS 153-1]
 gi|315299565|gb|EFU58813.1| PPIC-type PPIASE domain protein [Escherichia coli MS 16-3]
 gi|315616618|gb|EFU97235.1| PPIC-type PPIASE domain protein [Escherichia coli 3431]
 gi|320186071|gb|EFW60816.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella flexneri CDC
           796-83]
 gi|320197085|gb|EFW71704.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli
           WV_060327]
 gi|323164242|gb|EFZ50049.1| PPIC-type PPIASE domain protein [Shigella sonnei 53G]
 gi|323379714|gb|ADX51982.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           KO11]
 gi|323938627|gb|EGB34876.1| ppic-type ppiase domain-containing protein [Escherichia coli E1520]
 gi|323943248|gb|EGB39404.1| ppic-type ppiase domain-containing protein [Escherichia coli E482]
 gi|323952947|gb|EGB48815.1| ppic-type ppiase domain-containing protein [Escherichia coli H252]
 gi|323958634|gb|EGB54337.1| ppic-type ppiase domain-containing protein [Escherichia coli H263]
 gi|324010072|gb|EGB79291.1| PPIC-type PPIASE domain protein [Escherichia coli MS 57-2]
 gi|324010655|gb|EGB79874.1| PPIC-type PPIASE domain protein [Escherichia coli MS 60-1]
 gi|324116929|gb|EGC10842.1| ppic-type ppiase domain-containing protein [Escherichia coli E1167]
 gi|331037759|gb|EGI09979.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H736]
 gi|331051120|gb|EGI23172.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli M718]
 gi|331054746|gb|EGI26755.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA206]
 gi|331060244|gb|EGI32208.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA143]
 gi|331081038|gb|EGI52203.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H299]
          Length = 623

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|256020413|ref|ZP_05434278.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella sp. D9]
 gi|332281592|ref|ZP_08394005.1| conserved hypothetical protein [Shigella sp. D9]
 gi|320201685|gb|EFW76261.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli EC4100B]
 gi|332103944|gb|EGJ07290.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 623

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAQQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|254994931|ref|ZP_05277121.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
           str. Mississippi]
          Length = 630

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 146/648 (22%), Positives = 282/648 (43%), Gaps = 61/648 (9%)

Query: 12  WVAKIFLVVL--FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG---- 65
           +V  +   VL  FV F+ +G        +    V  VG   +    +  +++ EL     
Sbjct: 7   FVGAVLAAVLCAFV-FVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELSYIES 65

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
           ++ QK+     SE     G+ +  L  +V    L++F +++ L   +  +   I   P+F
Sbjct: 66  LVHQKL-----SEDDMRFGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMF 120

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-----------RTDVVGMFVGGMRP 174
             K  K     F   LA  G+ E  YI      L              +V   +  G   
Sbjct: 121 QDKSGKLDEQRFKDLLADAGMTEASYIGKVRGSLPAFVLSECIFPRSGEVYSQYYDGFAQ 180

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRI 232
             L      R   ++R+VD + ++   V   + P+++ L   + +   N     PEY+  
Sbjct: 181 DVL------RGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSA 234

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
            Y++    +   ++  SNDE+++E  KN E +   + R V  LVFP++ EA  A++++K+
Sbjct: 235 EYMIVSEDDALDEVTASNDEVESEI-KNSELH---DQRDVLNLVFPSESEASAAYKAIKE 290

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           GK F  + ++ G ++ +++L + +KE +P + + +++F L  +G+ + V     G+ +  
Sbjct: 291 GKAFEAVVKDLGTTVEEVTLRNVTKELLP-IEVRNTVFDL-NEGEVSGVFRSVVGWHVMK 348

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIV 411
           + +  P      +++K+ +A  ++  KA E      ++  E ++ G TS  E++   K  
Sbjct: 349 ILSKHPISAKDLKKLKEKVAMSIKRQKARELFSASIRKANEMISHGATSFSEVADVFKKP 408

Query: 412 SID-LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPD------GSY 463
           +I  L   D  G+D  GK   +  Y E+  F  + G   PL+    V  P        +Y
Sbjct: 409 AIGALKDFDSNGQDSTGK---SHTYAEESSFPGIVGALPPLAFSSQVGKPSHFVSIGNAY 465

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
             V +    P+R R  +E  + +   WK      E+   A+ L  +  K G+N    G  
Sbjct: 466 FSVIVTGVTPSRTRTFDESKSLLLDKWKNAFVVGEMLKLASDLTAKL-KAGEN---PGSA 521

Query: 524 LGASLLTTNQINRMDNENKFFGY--DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
           +G +      I+R++ +     Y  D + QVF   +  V    I+ G +  +F  T   +
Sbjct: 522 VGIATKKNENISRVNRKKGGSNYPEDLVDQVFEMRIGDVGEGVIDQGTNK-IFIATLKDI 580

Query: 582 ---GPVQEKD--KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
              G V EK+  +F ++ T      +   ++++L ++Y V ++  L++
Sbjct: 581 KTPGQVNEKELKEFQAHFTSSAISSIRRQLLSHLTNKYGVKINKKLLE 628


>gi|311280662|ref|YP_003942893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae
           SCF1]
 gi|308749857|gb|ADO49609.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae
           SCF1]
          Length = 624

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 125/529 (23%), Positives = 243/529 (45%), Gaps = 40/529 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI   ++ V F++ G+S  L  + G++T  + V  Q++  S F N+
Sbjct: 1   MMDSLRTAANSVVLKIIFGIIIVSFILTGVSSYL--IGGNNTYAAKVNSQEIGRSQFENA 58

Query: 60  WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
              E   + Q++G        N    ++  L +++L+ L+  A LDQ+ + +GL     +
Sbjct: 59  VASERNRMQQQLGDRFSELAANENYMKT--LRQQVLNRLIDEALLDQYAKHLGLAISDQQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--M 172
           V   I ++  F   + KF +D F   +++ G+   +Y       L    ++   VG   M
Sbjct: 117 VKQAIFQTQAFQ-SNGKFDNDRFNGIVSQMGMTADQYAQALRNQLETQQLINAIVGTDFM 175

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            P     +Q      + R V    +N   + A    S+  ++ ++E++K+ + +PE  R+
Sbjct: 176 LPGET--EQLATLVSQQRIVREATINVDALAAKQQVSDQEISSYYEQHKNEFVSPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE--AFQSL 290
           SYI  D    ++    S+ ++Q+ Y++++E++  PE   V   V   + EAD      +L
Sbjct: 234 SYIKLDAAAMQETA--SDSDIQSYYDQHQEQFTQPE--RVRYSVIQTKTEADAKAVLDAL 289

Query: 291 KKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            KG  F  LA+E  KS   IS      +G       PD  L ++   L +KG  + VI  
Sbjct: 290 SKGADFAALAKE--KSADIISAKNGGDMGWLEASTTPD-ELKNA--GLKEKGQLSGVITS 344

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD-- 402
           S G+++A + +++P+      EV+ DIA +++     EK  + Y  L++ ++   S D  
Sbjct: 345 SVGFLVARLDDVQPAKEKPLAEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNE 400

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDG 461
            ++  E++  +      + G+D    E+   P  + +    + G++     +  +   DG
Sbjct: 401 SLAGAEQVAGMKAVETGWFGRDSLPSELNFKPVADAIFNGGLVGENGAPGSNSDIITVDG 460

Query: 462 SYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
              +V +I E      + L +V   V    K  K  ++    A++L+ E
Sbjct: 461 DRAFVLRISEHKAEAVKPLADVKAQVTDIVKHTKAEQQAKLDADKLLAE 509


>gi|331645617|ref|ZP_08346721.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli M605]
 gi|331045779|gb|EGI17905.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli M605]
          Length = 623

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 141/651 (21%), Positives = 284/651 (43%), Gaps = 54/651 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY----------VVFKV 576
                  ++R        G D ISQ        V   P ++  SY          V+  +
Sbjct: 525 KFGEPKTLSRS-------GRDPISQ-----AAFVLPLPAKDKPSYGMATDMQGNVVLLAL 572

Query: 577 TNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 573 DEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|261253455|ref|ZP_05946028.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio orientalis CIP
           102891]
 gi|260936846|gb|EEX92835.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio orientalis CIP
           102891]
          Length = 619

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 125/532 (23%), Positives = 240/532 (45%), Gaps = 31/532 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           M++ +R+   +   KI L ++ + F+  G+    + V GS+ T   VG  ++    F  +
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGS--YIVGGSNNTAAKVGNVEIGRGEFEQA 58

Query: 60  WKQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E   +  ++G +  N  ++ +      K +LD +V+   L+Q  E +GL     +V 
Sbjct: 59  YQNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDVLLEQHAESLGLRVSDTQVR 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRP 174
             I   P F   D KF  +++ + L R G N + + ++  + L R  ++    G     P
Sbjct: 119 TLILEMPQFQ-IDGKFDQEIYQTALRRAGFNAESFAEYLRRDLVRNQLLTAIQGSDFTLP 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           S +  +   +   + R V  + L+     A A  S   +  ++++  + Y  PE  +++Y
Sbjct: 178 SEV--EAQSKLLTQTREVKKVTLSLEDFAAKAQLSEDEINDYYKQNPERYTRPEQVKVAY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKK 292
           I     + +  I++S ++ +  Y+++ +KY S E R V  ++    +Q +A      L  
Sbjct: 236 IELSAQQLKDDIQVSEEQAKQYYQEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNA 295

Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  LAEE+    G +    SLG   ++ + D +  D+ F+L K GD T ++   FGY
Sbjct: 296 GADFATLAEEKSDDFGSASEGGSLGWIERD-VMDPAFEDAAFALTKVGDTTGLVKSDFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRR 407
            I  +  +K S    + EV  +I  +++  +A ++  E    LE+       S+D+ +  
Sbjct: 355 HIIKLDELKDSVAKPYAEVAAEIKQELKDQQAVDQYYELQSELEKVAFEYPDSLDDAA-- 412

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
            + ++  +   DF  + V   E+   P   Q +     K+D L+ +     P+   + V+
Sbjct: 413 -QAINAKIHTTDFISQ-VDAPELLKTPAVLQAIVSPEVKEDGLNSEVIEVAPE-HVIVVR 469

Query: 468 IKESIPARDR---KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
           +++   ARD     L +V   V      VK  +     A++LV E  KEGK 
Sbjct: 470 VED---ARDEMVLPLADVREQVTTTLAKVKGEQSAIELADKLVAEL-KEGKQ 517


>gi|254476823|ref|ZP_05090209.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. R11]
 gi|214031066|gb|EEB71901.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. R11]
          Length = 613

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 116/505 (22%), Positives = 223/505 (44%), Gaps = 18/505 (3%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           ++K S+T+V  I + +L V    +G  +   SV    +V  VG Q+V    +    ++E 
Sbjct: 5   MKKLSKTFV-WILMGMLIVGLAGFGAVNFTGSVG---SVAVVGEQEVSVDDYARELQREQ 60

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             +  + G  +   +  ++GLD+ +L  L++ A LDQ   D+GL      ++ EI+R   
Sbjct: 61  RALEAQTGQRMPIAQLTTLGLDRVVLGRLIAIAALDQESSDLGLSIGDENLFEEISRIEA 120

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F      FS + +   L   G+NE+ +     +  +RT V G  + G    + L D    
Sbjct: 121 FQDPAGNFSRENYQFALENIGLNERAFEADLRRESARTLVQGAVMVGTEMPDTLRDTLTN 180

Query: 185 FYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
           +    RS D++V++   +   A +P+   L  +++   D +  P  K I+Y         
Sbjct: 181 YIGARRSFDWLVIDPASIALTAVEPTEEELRAFYDANIDQFTLPRTKVITYAALRPDALV 240

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEE 302
            +IE+    LQ  +    ++Y  PE R VE+LVF +Q  A  A   L   G  F  L E 
Sbjct: 241 DEIEVDEAALQQLFNDRSDEYQVPERRLVERLVFADQDAAASAKAQLDINGTTFEALVEN 300

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +G +L DI +G  +   +   + A  +FS A+ G     +    G  +  V+    +   
Sbjct: 301 RGLTLQDIDMGDVTMGDLG--TAAQDVFS-AEVGTVVGPLDSDLGPALYRVNGRLEARVT 357

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
              +V+ ++  ++   +A   ++   + + + LA G +++E+   E+   ++L  +D+  
Sbjct: 358 QLDDVRDELRAELATDRARRLIETRAEDINDMLAGGATLEEL---EQEPGMELGQIDWHT 414

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
               G  +AA      +   V  +D P        L DGS   +++ E +  R    E+ 
Sbjct: 415 GSSDG--IAAYDGFRSVASAVTIEDFP----EVEFLEDGSLFALRLDEELEPRPEPFEDA 468

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLV 507
              ++  W+  +  E + ++A+++ 
Sbjct: 469 QDKLRAAWQDNRLQEAMKAEADRVA 493


>gi|291281348|ref|YP_003498166.1| Peptidylprolyl isomerase [Escherichia coli O55:H7 str. CB9615]
 gi|209743820|gb|ACI70217.1| putative protease maturation protein [Escherichia coli]
 gi|290761221|gb|ADD55182.1| Peptidylprolyl isomerase [Escherichia coli O55:H7 str. CB9615]
 gi|320661211|gb|EFX28642.1| periplasmic folding chaperone [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 623

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 20/390 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ +LQ+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADLQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
             + +I+P+   S  EV+ D+A +++  KA
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDVAAKVKHEKA 380


>gi|260853664|ref|YP_003227555.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str.
           11368]
 gi|257752313|dbj|BAI23815.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str.
           11368]
 gi|323153478|gb|EFZ39732.1| PPIC-type PPIASE domain protein [Escherichia coli EPECa14]
          Length = 623

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 141/654 (21%), Positives = 284/654 (43%), Gaps = 60/654 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKVVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV--LEYSKEGKNFRDIGKNL 524
           +I E  P   + L +V   VK   +  K  ++    A +L+  L+  K  +  +  G   
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKF 526

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VV 573
           G   + +             G D ISQ  F+ P       P ++  SY          V+
Sbjct: 527 GEPKILSRS-----------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVL 569

Query: 574 FKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 570 LALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|15800171|ref|NP_286183.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           O157:H7 EDL933]
 gi|15829749|ref|NP_308522.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           O157:H7 str. Sakai]
 gi|168747883|ref|ZP_02772905.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4113]
 gi|168754546|ref|ZP_02779553.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4401]
 gi|168760404|ref|ZP_02785411.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4501]
 gi|168768396|ref|ZP_02793403.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4486]
 gi|168777137|ref|ZP_02802144.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4196]
 gi|168778934|ref|ZP_02803941.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4076]
 gi|168786292|ref|ZP_02811299.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC869]
 gi|168798005|ref|ZP_02823012.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC508]
 gi|208809217|ref|ZP_03251554.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4206]
 gi|208815330|ref|ZP_03256509.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4045]
 gi|208823220|ref|ZP_03263538.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4042]
 gi|209395856|ref|YP_002269088.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4115]
 gi|217325591|ref|ZP_03441675.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. TW14588]
 gi|254791625|ref|YP_003076462.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
           str. TW14359]
 gi|261223924|ref|ZP_05938205.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261256362|ref|ZP_05948895.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
           str. FRIK966]
 gi|12513303|gb|AAG54791.1|AE005223_6 putative protease maturation protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|13359952|dbj|BAB33918.1| putative protease maturation protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767557|gb|EDU31401.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4196]
 gi|188017729|gb|EDU55851.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4113]
 gi|189002976|gb|EDU71962.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4076]
 gi|189357979|gb|EDU76398.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4401]
 gi|189362425|gb|EDU80844.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4486]
 gi|189369155|gb|EDU87571.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4501]
 gi|189373538|gb|EDU91954.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC869]
 gi|189379237|gb|EDU97653.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC508]
 gi|208729018|gb|EDZ78619.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4206]
 gi|208731978|gb|EDZ80666.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4045]
 gi|208737413|gb|EDZ85097.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4042]
 gi|209157256|gb|ACI34689.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4115]
 gi|209743814|gb|ACI70214.1| putative protease maturation protein [Escherichia coli]
 gi|209743816|gb|ACI70215.1| putative protease maturation protein [Escherichia coli]
 gi|209743818|gb|ACI70216.1| putative protease maturation protein [Escherichia coli]
 gi|209743822|gb|ACI70218.1| putative protease maturation protein [Escherichia coli]
 gi|217321812|gb|EEC30236.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. TW14588]
 gi|254591025|gb|ACT70386.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
           str. TW14359]
 gi|320192857|gb|EFW67497.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7
           str. EC1212]
 gi|320638436|gb|EFX08150.1| periplasmic folding chaperone [Escherichia coli O157:H7 str. G5101]
 gi|320643817|gb|EFX12940.1| periplasmic folding chaperone [Escherichia coli O157:H- str.
           493-89]
 gi|320649168|gb|EFX17746.1| periplasmic folding chaperone [Escherichia coli O157:H- str. H
           2687]
 gi|320656061|gb|EFX23977.1| periplasmic folding chaperone [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320665187|gb|EFX32280.1| periplasmic folding chaperone [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326341205|gb|EGD64997.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7
           str. 1044]
 gi|326346020|gb|EGD69759.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7
           str. 1125]
          Length = 623

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 20/390 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ +LQ+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADLQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
             + +I+P+   S  EV+ D+A +++  KA
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDVAAKVKHEKA 380


>gi|27363507|ref|NP_759035.1| peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus CMCP6]
 gi|27359623|gb|AAO08562.1| Peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus CMCP6]
          Length = 619

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 187/406 (46%), Gaps = 22/406 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           M++ +R+   +   KI L ++ + F+  G+   L  VSGSS +   VG  ++    F  +
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYL--VSGSSNSAAKVGNVEIGRGEFEMA 58

Query: 60  WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V 
Sbjct: 59  YQNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVR 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  +D KF+ DV+ + L R G +   + ++  + L R+      +  ++ S 
Sbjct: 119 SMILAMPEFQ-QDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRS----QLLDALQTSE 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             L    D   + + + R V  + LN R        +   + +++++ K  +  PE  ++
Sbjct: 174 FTLPGEVDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSL 290
           SYI       +++I IS+DE++  Y+++ +KY S E R V  ++    +Q +A      L
Sbjct: 234 SYIELAADSLKQQITISDDEVKQYYQEHLDKYSSEEQRRVAHILIEGDDQAKAQAILDEL 293

Query: 291 KKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F  LA+E+    G + +   LG   ++ + D +  ++ F+L   GD T ++   F
Sbjct: 294 NAGADFATLAQEKSDDFGSADNGGELGWIERD-VMDPAFEEAAFALKNVGDVTGLVKSDF 352

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY I  +  +K      F +V   I  +M   KA ++  E    LE
Sbjct: 353 GYHIIKLEELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELE 398


>gi|227113469|ref|ZP_03827125.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 626

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 141/645 (21%), Positives = 283/645 (43%), Gaps = 58/645 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++   F++ G+ D L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSGD-YAAKVNGQEITRAQLEQAV 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G    ++ S       L ++ L  L+    LDQ+   +GL     ++  
Sbjct: 60  QNERSRQQETLGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDEQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   DN+F ++ ++ ++ R G+      D Y +ML +       + G   +  
Sbjct: 120 AIFDVPAFQ-TDNRFDNEKYLDQVRRLGVTP----DMYAQMLRKQLTSQQLIRGFGNTAF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           LL    D   +   ++R V    ++          ++  +  ++++ K N+ APE  ++S
Sbjct: 175 LLPQEIDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEIQSYYDQNKGNFIAPEEFKVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D       +++ +  +   YE+NK  Y  PE +    +   N+ +A     +LK+G
Sbjct: 235 YITLDAASIMDGVKVDDAAINDFYEQNKSGYSQPERKKFSVIQVKNEADAASVLDALKQG 294

Query: 294 KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
             F  LA+E+    +S  + G     ++ + S+ D +    L +KG  +  I  S GY+I
Sbjct: 295 GDFATLAKEKSTDVISRRNGGDLG--WMDENSMIDELKQAKLTEKGQVSEAIKSSVGYLI 352

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408
             + +++P       EV+ +IA +++     EK ++ Y  L++ ++   S D   ++  E
Sbjct: 353 VRLDDVQPQQVKPLSEVRAEIAEKVK----HEKAQDGYYALQQKVSEAASNDNESLASAE 408

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYK--EQLLFR--VFGKDDPLSKDHTVALPDGSYM 464
           +   +     D+  ++   K  AA+ ++   Q +F   + G++     +  V   DG   
Sbjct: 409 EAAGVKATQTDWFTRE---KVPAALNFQPVTQAIFSGALLGENGTAGNNSDVINVDGDRA 465

Query: 465 WV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           +V +I E  P   R L++V T++ +  K  K  ++    A +++ E  K+GK+     + 
Sbjct: 466 FVLRITEHKPESTRPLDQVRTEIVETLKRQKAEQQTRVDAEKILAEL-KQGKD-----EA 519

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-------- 575
           L A+ L+  +   M + ++  G      +F+ P       P ++  SY + +        
Sbjct: 520 LKAAGLSFGEAKTMSSISQ--GDATAEAIFAMP------HPEKDKPSYAITQDQAGNVVL 571

Query: 576 VTNSKVGPVQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           V    V P Q    +K +F S + Q     L DS+++ L+S+  +
Sbjct: 572 VALDSVTPHQLNDEQKTQFASQVQQGSLGALFDSLLSSLRSEAKI 616


>gi|320156965|ref|YP_004189344.1| peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus
           MO6-24/O]
 gi|319932277|gb|ADV87141.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio vulnificus
           MO6-24/O]
          Length = 619

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 187/406 (46%), Gaps = 22/406 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           M++ +R+   +   KI L ++ + F+  G+   L  VSGSS +   VG  ++    F  +
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYL--VSGSSNSAAKVGNVEIGRGEFEMA 58

Query: 60  WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V 
Sbjct: 59  YQNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVR 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  +D KF+ DV+ + L R G +   + ++  + L R+      +  ++ S 
Sbjct: 119 SMILAMPEFQ-QDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRS----QLLDALQTSE 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             L    D   + + + R V  + LN R        +   + +++++ K  +  PE  ++
Sbjct: 174 FTLPGEVDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSL 290
           SYI       +++I IS+DE++  Y+++ +KY S E R V  ++    +Q +A      L
Sbjct: 234 SYIELAADSLKQQITISDDEVKQYYQEHLDKYSSEEQRRVAHILIEGDDQAKAQAILDEL 293

Query: 291 KKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F  LA+E+    G + +   LG   ++ + D +  ++ F+L   GD T ++   F
Sbjct: 294 NAGADFAALAQEKSDDFGSADNGGELGWIERD-VMDPAFEEAAFALKNVGDVTGLVKSDF 352

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY I  +  +K      F +V   I  +M   KA ++  E    LE
Sbjct: 353 GYHIIKLEELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELE 398


>gi|170681699|ref|YP_001742585.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           SMS-3-5]
 gi|218698647|ref|YP_002406276.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli IAI39]
 gi|300937058|ref|ZP_07151924.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
 gi|301022565|ref|ZP_07186437.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
 gi|170519417|gb|ACB17595.1| peptidylprolyl isomerase [Escherichia coli SMS-3-5]
 gi|218368633|emb|CAR16372.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           IAI39]
 gi|284920251|emb|CBG33310.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 042]
 gi|300397446|gb|EFJ80984.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
 gi|300457889|gb|EFK21382.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
 gi|323170528|gb|EFZ56178.1| PPIC-type PPIASE domain protein [Escherichia coli LT-68]
 gi|323965128|gb|EGB60587.1| ppic-type ppiase domain-containing protein [Escherichia coli M863]
 gi|327254769|gb|EGE66385.1| PPIC-type PPIASE domain protein [Escherichia coli STEC_7v]
          Length = 623

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 141/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ D+A +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDVAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|253687447|ref|YP_003016637.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251754025|gb|ACT12101.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 626

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 141/645 (21%), Positives = 280/645 (43%), Gaps = 58/645 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++   F++ G+ D L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSGD-YAAKVNGQEITRAQLEQAV 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G    ++ S       L ++ L  L+    LDQ+   +GL     ++  
Sbjct: 60  QNERSRQQEALGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDEQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +N+F ++ ++ ++ R G+      D Y +ML +       + G   S+ 
Sbjct: 120 AIFDVPAFQ-TNNRFDNEKYLDQVRRLGVTP----DMYAQMLRKQLTSQQLIRGFGNSSF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           LL    D   +   ++R V    ++          ++  +  ++++ K N+ APE  ++S
Sbjct: 175 LLPQEIDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEVQSYYDQNKGNFIAPEEFKVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D       +++ +  +   YE+NK  Y  PE +    +   N+ +A     +LK+G
Sbjct: 235 YITLDAASIMDGVKVDDAAINDFYEQNKNDYSQPERKKFSVIQVKNEADATSVLDALKQG 294

Query: 294 KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
             F  LA+E+    +S  + G     ++ + S+ D +    L +KG  +  I  S GY+I
Sbjct: 295 GDFATLAKEKSTDIISRRNGGDLG--WMDENSMIDELKQAKLTEKGQISAAIKSSVGYLI 352

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408
             + +++P       EV+ +IA +++     EK ++ Y  L++ ++   S D   ++  E
Sbjct: 353 VRLDDVQPQQIKPLSEVRAEIAEKVK----HEKAQDGYYALQQKVSEAASNDNESLASAE 408

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYK--EQLLFR--VFGKDDPLSKDHTVALPDGSYM 464
           +   +     D+  ++   K  AA+ ++   Q +F   + G++     +  V   DG   
Sbjct: 409 EAAGVKATQTDWFTRE---KVPAALNFQPVTQAIFSGALLGENGTAGNNSDVINVDGDRA 465

Query: 465 WV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           +V +I E  P   R L++V T++ +  K  K  ++    A +++ E  K+GK+  D  K 
Sbjct: 466 FVLRITEHKPESTRPLDQVRTEIVETLKRQKAEQQARLDAEKILAEL-KQGKD--DALKA 522

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-------- 575
            G S      ++ +       G      +F+ P       P ++  SY + +        
Sbjct: 523 AGLSFGEAKTMSSISQ-----GDATAEAIFAMP------HPEKDKSSYAIAQDQAGNVVL 571

Query: 576 VTNSKVGPVQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           V    V P Q    +K +F S + Q     L DS+++ L+S+  +
Sbjct: 572 VALDSVTPHQLNDEQKTQFASQVQQGSLGALFDSLLSSLRSEAKI 616


>gi|320178277|gb|EFW53251.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella boydii ATCC
           9905]
          Length = 623

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 20/390 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
             + +I+P+   S  EV+ DIA +++  KA
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380


>gi|331671987|ref|ZP_08372783.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA280]
 gi|320173739|gb|EFW48922.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella dysenteriae CDC
           74-1112]
 gi|331070976|gb|EGI42335.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA280]
          Length = 623

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDLISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|187732708|ref|YP_001879152.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella boydii
           CDC 3083-94]
 gi|187429700|gb|ACD08974.1| peptidylprolyl isomerase [Shigella boydii CDC 3083-94]
          Length = 623

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 142/652 (21%), Positives = 285/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIHPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|330910235|gb|EGH38745.1| peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli AA86]
          Length = 623

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 141/651 (21%), Positives = 283/651 (43%), Gaps = 54/651 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG    VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLAGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLAGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY----------VVFKV 576
                  ++R        G D ISQ        V   P ++  SY          V+  +
Sbjct: 525 KFGEPKTLSRS-------GRDPISQ-----AAFVLPLPAKDKPSYGMATDMQGNVVLLAL 572

Query: 577 TNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 573 DEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|300820313|ref|ZP_07100465.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
 gi|331666797|ref|ZP_08367671.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA271]
 gi|331676113|ref|ZP_08376825.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H591]
 gi|300527098|gb|EFK48167.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
 gi|331066021|gb|EGI37905.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA271]
 gi|331076171|gb|EGI47453.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H591]
          Length = 623

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 141/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ D+A +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDVAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RISEHKPEVVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|300930256|ref|ZP_07145669.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
 gi|300461828|gb|EFK25321.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
          Length = 623

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 20/390 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
             + +I+P+   S  EV+ DIA +++  KA
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380


>gi|194437396|ref|ZP_03069493.1| peptidylprolyl isomerase [Escherichia coli 101-1]
 gi|253774568|ref|YP_003037399.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160511|ref|YP_003043619.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           B str. REL606]
 gi|194423565|gb|EDX39555.1| peptidylprolyl isomerase [Escherichia coli 101-1]
 gi|242376223|emb|CAQ30914.1| periplasmic folding helper protein [Escherichia coli BL21(DE3)]
 gi|253325612|gb|ACT30214.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972412|gb|ACT38083.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           B str. REL606]
 gi|253976622|gb|ACT42292.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           BL21(DE3)]
 gi|323972295|gb|EGB67505.1| ppic-type ppiase domain-containing protein [Escherichia coli TA007]
          Length = 623

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 20/390 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
             + +I+P+   S  EV+ DIA +++  KA
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380


>gi|157156448|ref|YP_001461628.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           E24377A]
 gi|157078478|gb|ABV18186.1| peptidylprolyl isomerase [Escherichia coli E24377A]
          Length = 623

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 20/390 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
             + +I+P+   S  EV+ DIA +++  KA
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380


>gi|283834240|ref|ZP_06353981.1| peptidylprolyl cis-trans isomerase D [Citrobacter youngae ATCC
           29220]
 gi|291069758|gb|EFE07867.1| peptidylprolyl cis-trans isomerase D [Citrobacter youngae ATCC
           29220]
          Length = 624

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 145/651 (22%), Positives = 288/651 (44%), Gaps = 54/651 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G +    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYSRELKLNISDDQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G    ++
Sbjct: 119 QAIFTTPSFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINSVAG----TD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    ++  +T ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRIVREATIDVNALAAKQSVTDQEVTSYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++    S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAAAMQETA--SDADIQSYYDQHQDQFTQPQRNRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           G  F  LA+E  KS   IS      +G   +   PD  L ++   L +KG  + VI  S 
Sbjct: 292 GGDFAALAKE--KSADIISARKGGDMGWLEESTTPD-ELKNA--GLKEKGQLSGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404
           G+++A + +++P+      E + DIA +++     EK  + Y  L++ ++   S D   +
Sbjct: 347 GFLVARLDDVQPAQVKPLSEARDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGS 462
           +  E+   +      +  +D   KE+   P  + ++F   + G++     +  +   DG 
Sbjct: 403 AGAEQAAGMKAVETGWFSRDSLPKELNFKPVAD-IIFNGGLVGENGTPGSNSDIITVDGD 461

Query: 463 YMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
             +V +I E      + L EV   V    K  K  ++    A++L+ +  K GK   D  
Sbjct: 462 RAFVLRIAEHKAEAVKPLAEVKEQVTALVKHNKAVQQAKLDADKLLADL-KAGKG-DDAM 519

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSG---PVEMVKCFPIENGL--SYVVFKV 576
           K  G S      ++R        G D +SQ   G   P +    + + N +  + V+  +
Sbjct: 520 KAAGLSFGEAKTLSRT-------GQDPLSQAAFGLSLPAQDKPSYGVANDMQGNVVLLAL 572

Query: 577 TNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              K G  P  +K   +  +TQ   +   +++++ L+    + V D L Q+
Sbjct: 573 EEVKAGSMPEAQKKAMVQGITQNNAQITFEALMSNLRKAAKIKVGDALEQQ 623


>gi|323963431|gb|EGB58993.1| ppic-type ppiase domain-containing protein [Escherichia coli H489]
          Length = 623

 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 20/390 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
             + +I+P+   S  EV+ DIA +++  KA
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380


>gi|260773190|ref|ZP_05882106.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio metschnikovii CIP
           69.14]
 gi|260612329|gb|EEX37532.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio metschnikovii CIP
           69.14]
          Length = 619

 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 123/560 (21%), Positives = 241/560 (43%), Gaps = 48/560 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E +R+   +   KI L ++ + F+  G+ + +    G++    VG+ ++    F  ++
Sbjct: 1   MMERLREGVNSIAVKIILGLIILSFIFAGVGNYIVG-GGNNAAAKVGKTEISRGEFEQAY 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G     + ++      L + +LD++++   ++Q  + +GL     +V  
Sbjct: 60  QNERNRMQSQLGDYFSTLLADPTYVASLRRSVLDSMINDILIEQHAQSLGLRVSDNQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F     +F  +++ S L R G       D + + + R+ V    V  ++ S  
Sbjct: 120 AIIAMPEFQSA-GQFDQNIYQSALRRAGFTP----DAFAEYMRRSLVRDQLVAALQTSEF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            L    +       + R V  I L           ++  + Q++++  D Y  PE  RIS
Sbjct: 175 TLPGEVEGLSALVAQARDVRTITLPTTDFAKDVQLTDQEIEQYYQQNDDRYTRPEQMRIS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLK 291
           YI     + ++ I I++++ +A Y+ +++KY S E R V  ++    +++ A      L 
Sbjct: 235 YIELAAQQLKEAITITDEQTKAFYDAHQDKYASKEQRKVSHIMIQGDDEQAAQAILDQLH 294

Query: 292 KGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G  F QLA+E+    G S     LG    + + D +   + F+L + G+ + ++   FG
Sbjct: 295 NGADFAQLAKEKSQDIGSSQEGGELGWIEPDTM-DAAFESAAFALQQVGEISGLVKSDFG 353

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y +  +  +K      +++V  +I  +++  +A ++  +    LE       S D +   
Sbjct: 354 YHVIKLDELKAPVIKPYEQVAVEIKAELQDQQAVDRFYQLQTELERIAF--ESPDSLDEA 411

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAI---PYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
            K +  D+   DF    +   E+ AI   P   Q L +   K+D L+ D     P+   +
Sbjct: 412 AKAIGADIQHTDF----ISVAELPAILSAPAVIQALRQPEVKEDQLNSDAIEIAPE-HVV 466

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            V+++++ P     L EV   +      +K  ++    AN LV             G N 
Sbjct: 467 VVRVEQTRPEIILPLAEVREQIVATLSRLKAEQQALQLANDLV------------TGLNA 514

Query: 525 G-ASLLTTNQ-----INRMD 538
           G  SLL T+Q     I RMD
Sbjct: 515 GDNSLLDTHQLAFSEIQRMD 534


>gi|193064188|ref|ZP_03045272.1| peptidylprolyl isomerase [Escherichia coli E22]
 gi|194428997|ref|ZP_03061529.1| peptidylprolyl isomerase [Escherichia coli B171]
 gi|260842642|ref|YP_003220420.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str.
           12009]
 gi|192929217|gb|EDV82827.1| peptidylprolyl isomerase [Escherichia coli E22]
 gi|194412934|gb|EDX29224.1| peptidylprolyl isomerase [Escherichia coli B171]
 gi|257757789|dbj|BAI29286.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str.
           12009]
 gi|323160448|gb|EFZ46396.1| PPIC-type PPIASE domain protein [Escherichia coli E128010]
          Length = 623

 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 140/654 (21%), Positives = 284/654 (43%), Gaps = 60/654 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L +
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNE 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV--LEYSKEGKNFRDIGKNL 524
           +I E  P   + L +V   VK   +  K  ++    A +L+  L+  K  +  +  G   
Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKF 526

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VV 573
           G   + +             G D ISQ  F+ P       P ++  SY          V+
Sbjct: 527 GEPKILSRS-----------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVL 569

Query: 574 FKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 570 LALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|85712920|ref|ZP_01043960.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           baltica OS145]
 gi|85693226|gb|EAQ31184.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           baltica OS145]
          Length = 624

 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 197/416 (47%), Gaps = 35/416 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+++ AK  LV++ + F + G+  +  +   ++TV  V   ++   +   ++
Sbjct: 1   MLERIREGSQSFTAKAVLVLIILTFALAGVG-SYVTGGATTTVAEVNDAEISQQALERAY 59

Query: 61  KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + ++ G +   V+S+      +   +L+ L+    L Q+  D G+     RV  
Sbjct: 60  ENERNRLQEQFGDMFEAVSSQPGYMQSVRANVLEQLIQQELLVQYARDHGMRVSAARVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR---P 174
           EI   P F     +F +D+++  L   G   +++       L R+ +    +G      P
Sbjct: 120 EIRDIPAFRSA-GQFDNDIYLMALRNAGYTPEQFATVLRDDLIRSQI-AQAIGATEFALP 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           +  L  Q  R   + RS  YI+  N +     + S++ +  ++ + +  ++ PE  ++++
Sbjct: 178 AEALALQ--RLQKQTRSGAYIIAENANFVDQVELSDSDIENYYNENQQQFQTPEQLKVAF 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQS 289
           +     E    +++S+DE++A Y+ + ++Y + E R V  ++  +     Q++A EA   
Sbjct: 236 VQLSKAELYNDVKVSDDEVKAYYQGSIDQYRTDEERRVAHILIESDSDNAQEKAQEALAQ 295

Query: 290 LKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           L  G  F  +A+         EQG  L  I+ GS  +++       ++ F+L   GD + 
Sbjct: 296 LNDGADFAAIAKEYSDDTFSAEQGGDLDWITKGSMDEDF------DNAAFALENVGDVSD 349

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           ++  SFGY I  + +++P     F+    D+A ++R    +++V + Y  L++ LA
Sbjct: 350 IVETSFGYHIIKLLDVRPGEVTPFE----DVAGEIRQKLKAQQVDDKYFELQQKLA 401


>gi|83858361|ref|ZP_00951883.1| rotamase family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853184|gb|EAP91036.1| rotamase family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 635

 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 133/638 (20%), Positives = 262/638 (41%), Gaps = 20/638 (3%)

Query: 1   MLEIIRKASRT-WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML +IR  +R+  +  + + +L   F +WG+SD +FS  G+S +V VG Q V  S    +
Sbjct: 1   MLSLIRSLARSPIIGGMIIALLIAAFALWGVSD-IFSGGGTSALV-VGPQTVSASEVQRN 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           ++++L  I Q+    +  E+A  +GL   ++  L++   +D   + +GL      ++  +
Sbjct: 59  YERQLFQI-QRDNPQITREQADQMGLGDSVVRRLIAETAVDAKADQMGLTISDDTLFETL 117

Query: 120 ARSPLFHGK-DNKFSHDVFVSRLAREG----INEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
              P F     N+F    + S L   G    + E+++    T  L R   V   +GG+R 
Sbjct: 118 RSIPAFQNPFTNQFDPGTYASILRENGYRGSMAERQFESDITSELRRAQFVAAALGGVRA 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            ++  +    +  E RS+  + L    V     P +  LT +  +    +   E +R++ 
Sbjct: 178 PDIYAEIRAAYENERRSLRALFLRPVLVETPEAPDDETLTAFIGENARIFERAEQRRLTL 237

Query: 235 ILFDVHEKEKKIEISNDELQA--EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           +     +  + +E+S ++LQA  +Y     +   P  R++ Q   P+Q+ A+ A   L  
Sbjct: 238 VRITPTDLLRDVEVSEEDLQALYDYRLQNGELADPATRSLTQWPAPDQQTAETAAARLGA 297

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           G+    +  E G    +++L       +PD  +A+  F + + G+   V     G+ +  
Sbjct: 298 GESVASVVAELGLG-DEVALADVEAYQVPDAQIAERAFQM-QAGELAAV-ESQLGWRVLR 354

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           +       T  F  V+ ++  ++    A   + +     EE    G +++E +R   + +
Sbjct: 355 IDAANDPDTPDFAAVESELRTELARDTAEGMMLDALGVFEEARGNGATLEEAAREAGLFA 414

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
             +  V   G     +    +     +L   F      + D      DG Y  V++ E  
Sbjct: 415 ERIDFVGANGYSPDREPALTLLQNPDILSAAFAAQQGFATDLEGYGEDGGYFVVRVDEIE 474

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           PAR  +L+EV  D  + W   +T   +    + +       G+    I  +LGA     +
Sbjct: 475 PARLYELDEVREDASRFWVMRETDNRLQEVVDDVQARLDA-GETLDAIAASLGAGARVES 533

Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS---YVVFKVTNSKVGPVQEKDK 589
            +   +     F    ++Q F  P         +N  +    +V +V  ++ G V +  +
Sbjct: 534 AVLGREETAGPFNAQLVAQAFRQPEGGRFVSRADNQTTRALVLVDEVIAAEGGAVTQAQR 593

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
             + +T  +  D    V   L + Y V  + +LI + L
Sbjct: 594 --NEMTGELRDDATQIVTNALINAYDVRQNQDLIDQAL 629


>gi|50120091|ref|YP_049258.1| peptidyl-prolyl cis-trans isomerase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610617|emb|CAG74062.1| peptidyl-prolyl cis-trans isomerase D [Pectobacterium atrosepticum
           SCRI1043]
          Length = 626

 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 118/533 (22%), Positives = 238/533 (44%), Gaps = 33/533 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++   F++ G+ D L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSGD-YAAKVNGQEITRAQLEQAV 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G    ++ S       L ++ L  L+    LDQ+   +GL     ++  
Sbjct: 60  QNERSRQQETLGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDAQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +N+F ++ ++ ++ R G+      D Y +ML +       + G   +  
Sbjct: 120 AIFDVPAFQ-TNNRFDNEKYLDQVRRLGVTP----DMYAQMLRKQLTSQQLIRGFGNTAF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           LL    D   +   ++R V    ++          ++  +  ++++ K N+ APE  ++S
Sbjct: 175 LLPQEIDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEVQSYYDQNKGNFIAPEEFKVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D       +++ +  +   YE+NK  Y  PE +    +   N+ EA     SLK+G
Sbjct: 235 YITLDAASIMDSVKVDDKAINDFYEQNKNDYSQPERKKFSVIQVKNEAEAASVLDSLKQG 294

Query: 294 KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
             F  LA+E+    +S  + G     ++ + S+ D +    L +KG  +  I  S GY+I
Sbjct: 295 GDFAALAKEKSTDIISRRNGGDLG--WMDENSMIDELKQAKLTEKGQVSAAIKSSVGYLI 352

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408
             + +++P       EV+ +IA +++     EK ++ Y  L++ ++   S D   ++  E
Sbjct: 353 VRLDDVQPQQVKPLSEVRAEIAEKVK----HEKAQDGYYALQQKISEAASNDNESLASAE 408

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYK--EQLLFR--VFGKDDPLSKDHTVALPDGSYM 464
           +  S+     ++  ++   K  A + ++   Q +F   + G++     +  V   DG   
Sbjct: 409 EAASVKAAQTEWFTRE---KVPAVLNFQPVTQAIFSGALLGENGAAGNNSDVINVDGDRA 465

Query: 465 WV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
           +V +I E  P   R L++V T++ +  K  K  ++    A +++ E  K+GK+
Sbjct: 466 FVLRITEHKPESTRPLDQVRTEIVEALKRQKAEQQARVDAEKILAEL-KQGKD 517


>gi|255004191|ref|ZP_05278992.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
           str. Virginia]
          Length = 630

 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 145/648 (22%), Positives = 281/648 (43%), Gaps = 61/648 (9%)

Query: 12  WVAKIFLVVL--FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG---- 65
           +V  +   VL  FV F+ +G        +    V  VG   +    +  +++ EL     
Sbjct: 7   FVGAVLAAVLCAFV-FVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELSYIES 65

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
           ++ QK+     SE     G+ +  L  +V    L++F +++ L   +  +   I   P+F
Sbjct: 66  LVHQKL-----SEDDMRFGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMF 120

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-----------RTDVVGMFVGGMRP 174
             K  K     F   LA  G+ E  YI      L              +V   +  G   
Sbjct: 121 QDKSGKLDEQRFKDLLADAGMTEASYIGKVRGSLPAFVLSECIFPRSGEVYSQYYDGFAQ 180

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRI 232
             L      R   ++R+VD + ++   V   + P+++ L   + +   N     PEY+  
Sbjct: 181 DVL------RGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSA 234

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
            Y++    +   ++  SNDE+++E  KN E +   + R V  LVFP++ EA  A++++K+
Sbjct: 235 EYMIVSEDDALDEVTASNDEVESEI-KNSELH---DQRDVLNLVFPSESEASAAYKAIKE 290

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           GK F  + ++ G ++ +++L + +KE +P + + +++F L  +G+ + V     G+ +  
Sbjct: 291 GKAFEAVVKDLGTTVEEVTLRNVTKELLP-IEVRNTVFDL-NEGEVSGVFRSVVGWHVMK 348

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIV 411
           + +  P      +++K+ +A  ++  KA E      ++  E ++ G TS  E++   K  
Sbjct: 349 ILSKHPISAKDLKKLKEKVAMSIKRQKARELFSASIRKANEMISHGATSFSEVADVFKKP 408

Query: 412 SID-LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPD------GSY 463
           +I  L   D  G+D  GK   +  Y E+  F  + G   PL+    V  P        +Y
Sbjct: 409 AIGALKDFDSNGQDSTGK---SHTYAEESSFPGIVGALPPLAFSSQVGKPSHFVSIGNAY 465

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
             V +    P+R R  +E  + +   WK      E+   A+ L  +  K G+N    G  
Sbjct: 466 FSVIVTGVTPSRTRTFDESKSLLLDKWKNAFVVGEMLKLASDLTAKL-KAGEN---PGSA 521

Query: 524 LGASLLTTNQINRMDNENKFFGY--DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
           +G        I+R++ +     Y  D + QVF   +  V    I+ G +  +F  T   +
Sbjct: 522 VGIVTKKNENISRVNRKKGSSNYPEDLVDQVFEMRIGDVGEGVIDQGANK-IFIATLKDI 580

Query: 582 ---GPVQEKD--KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
              G V EK+  +F ++ T      +   ++++L ++Y + ++  L++
Sbjct: 581 KTPGQVNEKELKEFQAHFTSSAISSIRRQLLSHLTNKYGIKINKKLLE 628


>gi|88657679|ref|YP_507533.1| rotamase family protein [Ehrlichia chaffeensis str. Arkansas]
 gi|88599136|gb|ABD44605.1| rotamase family protein [Ehrlichia chaffeensis str. Arkansas]
          Length = 634

 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 139/653 (21%), Positives = 283/653 (43%), Gaps = 59/653 (9%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALF--SVSGSSTVVSVGRQKVPFSSFINSWKQ 62
           I   S+ +  K  L++L    +      + F  S +    +  +G +K+    + +++  
Sbjct: 3   IHMKSKAFFVKPLLIILVCSLVFIAFGASFFPGSFNNEKYIAKIGHEKLSLQDYTSAYHD 62

Query: 63  ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
           EL  I   +   +  E+     +    L+ L+    L +F + + L+     +   I   
Sbjct: 63  ELRYIQHVLNRPLTEEQIAQFNIKLSTLNKLIENKVLTKFADSLNLKVGENSILNHIKSI 122

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL----- 177
             F  ++  F    F   L+  G+ E+ YI+   K    T ++     G + +       
Sbjct: 123 KFFQDENGNFDKTKFNIGLSNAGLTERLYINKLEKAFPITMLMSCLFSGTQNTYTQYHPE 182

Query: 178 LLDQAKRFYFENRSVDYI----VLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKR 231
           L+ Q  +   + R++D I      N+  VP I +     L + +E+ +   N   PE + 
Sbjct: 183 LIKQILQNLHQARTIDVIEISPTTNDISVPNIDE-----LKKLYEEKRKSGNLTFPESRV 237

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           I Y+  D      +  ++ +E+  + + ++      E R +  LVF  + EA+ A ++L 
Sbjct: 238 IEYVTIDHENFINQTNVTQEEIDNKIKADE----LDEQRDIFNLVFSTKNEAETALKALN 293

Query: 292 KGKKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           +G  F  +      + L +I+L +  K  +P+  + + +FSL K+G+ +P++H  FG+ I
Sbjct: 294 EGTDFDSIVTNIAHTTLDNITLFNIVKNTLPN-DIRNQVFSL-KEGEISPILHSMFGWHI 351

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
             + NI    T    E+ + IA  ++  KA++ +  + + + + +  GTS+ EI+    +
Sbjct: 352 IKIKNIHKISTKDLAELSEKIAQNIKKKKATDLLYTEIQAINDKINNGTSIQEIAESYNL 411

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYK-EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
            SI    VD +GKD    ++  +    + ++   F     L+K       DG +  V + 
Sbjct: 412 -SIKTANVDISGKDPSDNKIKMLETNYDAIVLAAFSAQ--LNKPSNFTDNDGYFFSVNVT 468

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +  P+R++  +E    +  +W+    A+++S    ++V++     K+  DI  N+   LL
Sbjct: 469 KIEPSREKTFDESKEQLVYEWQHDLKAQKLSKLTQEVVIKL----KSGIDIN-NIDGVLL 523

Query: 530 TTNQ------INRMDNENKFFGYDGISQVFS-GPVEMVKCF-----PIENGLSYVVFK-- 575
             NQ      +  +DN  + +  D I+++F     E+ K +       E  +   + K  
Sbjct: 524 KPNQVVYRNSVAAVDNPGQNYPSDLINEIFHLKKGEISKNYQHDISSSEQKMLIAILKDI 583

Query: 576 -----VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
                V+N     +QEK      +     + L + +IA+L  +YSV ++ NLI
Sbjct: 584 KNADQVSNVDFKNIQEK------IANDNLESLKNQLIAHLIKKYSVKINQNLI 630


>gi|260768943|ref|ZP_05877877.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio furnissii CIP
           102972]
 gi|260616973|gb|EEX42158.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio furnissii CIP
           102972]
          Length = 619

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 193/432 (44%), Gaps = 20/432 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R+   +   KI L ++ + F+  G+ + L  +SGS+   + VG  ++    F  +
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL--ISGSNNAAAKVGGTEIGRGEFEQA 58

Query: 60  WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
           ++ E   +  ++G      + + E   S    K +LD +++   LDQ  + +GL     +
Sbjct: 59  YQNERNRMQSQLGDYFSNLLADPEYVAS--FRKSVLDRMINDLLLDQHAQALGLRVSDTQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   I   P F   D KF  +++ S L R G +   + ++  + L R  ++    G    
Sbjct: 117 IRQMILDMPQFQ-TDGKFDQEIYQSALRRAGFSPDSFAEYMRRDLVRNQLLSALQGSEFT 175

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
               ++       + R +  I L+        + S+  + Q++++  + Y  PE  ++SY
Sbjct: 176 LKGEVEAQGELITQTRDIRTITLSPAEFAKSIELSDDEIEQYYKQNSERYTRPEQVKLSY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKK 292
           I     + +  I IS+++ +  YE + +KY S E R V  ++    ++K A      L  
Sbjct: 236 IELSAEQLKNAITISDEQAKQYYESHMDKYSSAEQRQVSHILIQGDDEKAAQAILDELNA 295

Query: 293 GKKFIQLAEEQGKSLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  LA+E+ + +       SLG    + + D +   + F+L K GD + ++   FGY
Sbjct: 296 GADFATLAKEKSQDIGSAEEGGSLGWIEHDTM-DPAFESAAFALKKAGDVSGLVKSDFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I  + ++K      + EV  DI ++++  +A +K  E    LE+      S D +    
Sbjct: 355 HIIKLDDVKAPVAKPYAEVAADIKSELKDQQAIDKFYELQTELEKVAF--ESPDSLDDAA 412

Query: 409 KIVSIDLPLVDF 420
           K +S  +   DF
Sbjct: 413 KAISAHIVSTDF 424


>gi|194435312|ref|ZP_03067524.1| peptidylprolyl isomerase [Shigella dysenteriae 1012]
 gi|194416444|gb|EDX32601.1| peptidylprolyl isomerase [Shigella dysenteriae 1012]
 gi|332085739|gb|EGI90903.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 155-74]
          Length = 623

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 182/390 (46%), Gaps = 20/390 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFAIPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDGLNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
             + +I+P+   S  EV+ DIA +++  KA
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380


>gi|324114668|gb|EGC08636.1| ppic-type ppiase domain-containing protein [Escherichia fergusonii
           B253]
          Length = 622

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 187/393 (47%), Gaps = 28/393 (7%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++ 
Sbjct: 1   MDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAFN 59

Query: 62  QELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  D+ L     +V  
Sbjct: 60  SERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  + + L + G++     D Y + L         + G+  ++ 
Sbjct: 119 AIFATPAFQ-VDGKFDNSRYNAILNQMGMS----ADQYAQALRNQLTTQQLINGIAGTDF 173

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           +L    D+      + R V    ++          S+A +T +++++K+N+  PE  R+S
Sbjct: 174 MLKGETDELAALVSQQRVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRVS 233

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI+ D    ++   +S+ ++QA Y+++++++  P+      +    + EA     +L  G
Sbjct: 234 YIMLDAANIQQP--VSDADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNG 291

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F +LA+E  KS   IS      LG       P   L D+   L  KG  + VI  S G
Sbjct: 292 GDFAELAKE--KSADIISARNGGDLGWLEDSTTPQ-ELKDA--GLKDKGQLSGVIKSSVG 346

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           +++  + +++P+   +  EV+ DIA +++  KA
Sbjct: 347 FLVVRLDDVQPAKVKTLAEVRDDIAAKVKHEKA 379


>gi|315180639|gb|ADT87553.1| peptidyl-prolyl cis-trans isomerase D [Vibrio furnissii NCTC 11218]
          Length = 619

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 193/432 (44%), Gaps = 20/432 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R+   +   KI L ++ + F+  G+ + L  +SGS+   + VG  ++    F  +
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL--ISGSNNAAAKVGGTEIGRGEFEQA 58

Query: 60  WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
           ++ E   +  ++G      + + E   S    K +LD +++   LDQ  + +GL     +
Sbjct: 59  YQNERNRMQSQLGDYFSNLLADPEYVAS--FRKSVLDRMINDLLLDQHAQALGLRVSDTQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   I   P F   D KF  +++ S L R G +   + ++  + L R  ++    G    
Sbjct: 117 IRQMILDMPQFQ-TDGKFDQEIYQSALRRAGFSPDSFAEYMRRDLVRNQLLSALQGSEFT 175

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
               ++       + R +  I L+        + S+  + Q++++  + Y  PE  ++SY
Sbjct: 176 LKGEVEAQGELITQTRDIRTITLSPAEFAKSIELSDDEIEQYYKQNSERYTRPEQVKLSY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKK 292
           I     + +  I IS+++ +  YE + +KY S E R V  ++    ++K A      L  
Sbjct: 236 IELSAEQLKNAITISDEQAKQYYESHMDKYSSAEQRQVSHILIQGDDEKAAQAILDELNA 295

Query: 293 GKKFIQLAEEQGKSLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  LA+E+ + +       SLG    + + D +   + F+L K GD + ++   FGY
Sbjct: 296 GADFATLAKEKSQDIGSAEEGGSLGWIEHDTM-DPAFESAAFALKKAGDVSGLVKSDFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I  + ++K      + EV  DI ++++  +A +K  E    LE+      S D +    
Sbjct: 355 HIIKLDDVKAPVAKPYAEVAADIKSELKDQQAIDKFYELQTELEKVAF--ESPDSLDDAA 412

Query: 409 KIVSIDLPLVDF 420
           K +S  +   DF
Sbjct: 413 KAISAHIVSTDF 424


>gi|262276274|ref|ZP_06054083.1| peptidyl-prolyl cis-trans isomerase PpiD [Grimontia hollisae CIP
           101886]
 gi|262220082|gb|EEY71398.1| peptidyl-prolyl cis-trans isomerase PpiD [Grimontia hollisae CIP
           101886]
          Length = 630

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 177/401 (44%), Gaps = 26/401 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59
           M+E +R+   +   KI L ++   F+  G+   L   SGS     +VG +++  + F  +
Sbjct: 1   MMERLREGVNSIAVKIILGLIIFSFVFAGVGGYL--ASGSVQPAATVGNEEISRNQFEQA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E  ++  + G   +   +    L +    +L+ +V+ + LDQ  +++GL     ++ 
Sbjct: 59  YQNERALMQAQAGDFFSQLLSDPNYLAQFRFNVLERMVNQSLLDQEAQNLGLRVSDDQIK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G    F +D++++ L R G+   ++ D+  + L R  +V   +       
Sbjct: 119 QTIREMPAFRGATGLFDNDLYLASLRRNGLTPDQFADYVRQDLVREQLVNALISSEFALK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             L+   +   + R+V  + L        AD +    T ++E+    +  PE  +I+Y+ 
Sbjct: 179 GELEALHKLEGQTRTVRTLTLPLADFAEKADITAEQKTAYYEQNPAEFVRPEQFKIAYVE 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQSLK 291
                      ++ DE +A YE NK  Y + E R V  ++        +++A+     L 
Sbjct: 239 LSGEGIADVAGVTEDEAKAYYEANKASYGTAEQRKVSHIMIQGDDNAAKEKAEAVLSELN 298

Query: 292 KGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            G  F +LA+         EQG  L     G      + D +  ++ F+L  KGD T V+
Sbjct: 299 AGADFAELAKTRSDDTFSAEQGGQLDWFDKG------VMDPAFEEAAFALNNKGDITGVV 352

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              FG+ I  + ++KPS    F +V+ DI  Q++   A EK
Sbjct: 353 QSDFGFHIIKLDDVKPSDAKPFAQVRDDIMAQLKQQHAVEK 393


>gi|296101563|ref|YP_003611709.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295056022|gb|ADF60760.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 623

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 143/650 (22%), Positives = 285/650 (43%), Gaps = 53/650 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLIG-GGANYAAKVNGQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L ++ L+ L+  A LDQ+ + +GL     +V 
Sbjct: 60  AGERNRMQQQLGDQF-SELAANEGYMKTLRQQTLNRLIDEALLDQYAKKLGLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +  F   + KF +  + S + + G+   +Y       L+   ++   VG    ++
Sbjct: 119 KAIFSTQAFQ-SNGKFDNARYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVG----TD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    S+A +  W+E+ K+++ APE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVRQATIDVNALAAKQQVSDAEVNAWYEQNKNSFVAPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++    ++ E+Q+ Y+++++++  P+      +    + +A      L K
Sbjct: 234 SYIKLDAAALQETA--TDAEIQSYYDQHQDQFTQPQRNRYSVIQTKTEADAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           G  F  +A  + KS   IS      +G       PD  L ++   L  KG  + VI  S 
Sbjct: 292 GADFATVA--KAKSTDIISAKNGGDMGWLEAATTPD-ELKNA--GLKDKGQLSGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404
           G+++A + +I+ + T    EV+ DIA +++     EK  + Y  L++ ++   S D   +
Sbjct: 347 GFLVARLDDIEAAKTKPLAEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463
           +  E+   +      + G+D   +E+   P  + +    + G++     +  +   DG  
Sbjct: 403 AGAEQAAGVKAVETGWFGRDNLPEELNFKPVSDAIFNGGLVGENGTPGSNSDIITVDGDR 462

Query: 464 MWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            +V ++ E  P   + L EV   V    K  K  ++    A +++ +  K GK   D  K
Sbjct: 463 AFVLRVSEHKPEAIKPLAEVKDQVVAQVKHSKAEQQAKLDAEKILADL-KAGK--EDALK 519

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSG---PVEMVKCFPIENGL--SYVVFKVT 577
             G S      ++R        G D ISQ   G   P +    F     +  + V+  + 
Sbjct: 520 AAGLSFGDAKTLSRT-------GQDPISQAVFGLSLPAKDKPSFGTTTDMQGNVVLLALD 572

Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             K G  P  ++   +  +TQ   +   +++++ L+ +  + + D + Q+
Sbjct: 573 EVKAGTMPEAQRKAMVQGITQNNAQIAFEAMMSNLRKEAKIKLGDAITQQ 622


>gi|37679292|ref|NP_933901.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
 gi|37198035|dbj|BAC93872.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
          Length = 625

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 183/405 (45%), Gaps = 20/405 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           M++ +R+   +   KI L ++ + F+  G+   L  VSGSS +   VG  ++    F  +
Sbjct: 7   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYL--VSGSSNSAAKVGNVEIGRGEFEMA 64

Query: 60  WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V 
Sbjct: 65  YQNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVR 124

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  +D KF+ DV+ + L R G +   + ++  + L R+      +  ++ S 
Sbjct: 125 SMILAMPEFQ-QDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRS----QLLDALQTSE 179

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             L    D   + + + R V  + LN R        +   + +++++ K  +  PE  ++
Sbjct: 180 FTLPGEVDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKV 239

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSL 290
           SYI       +++I IS+DE++  Y+++ +KY S E R V  ++    +Q +A      L
Sbjct: 240 SYIELAADSLKQQITISDDEVKQYYQEHLDKYSSEEKRRVAHILIEGDDQAKAQAILDEL 299

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             G  F  LA+++         G    + +  + D +  ++ F+L   GD T ++   FG
Sbjct: 300 NAGADFAALAQDKSDDFGSADNGGELGWIERGVMDPAFEEAAFALKNVGDVTGLVKSDFG 359

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           Y I  +  +K      F +V   I  +M   KA ++  E    LE
Sbjct: 360 YHIIKLEELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELE 404


>gi|260776378|ref|ZP_05885273.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260607601|gb|EEX33866.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 619

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 144/636 (22%), Positives = 275/636 (43%), Gaps = 54/636 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           M++ +R+   +   KI L ++ + F+  G+    + V GS+ +   VG  ++    F  +
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGS--YIVGGSNNSAAKVGNVEIGRGEFEQA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLD---KKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E   +  ++G   ++  A    ++   K +LD +++   L+Q  E +GL     +V 
Sbjct: 59  YQNERNRMQAQLGDYFSTLLADPNYVESFRKSVLDRMINDLLLEQHAESLGLRVSDSQVR 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   D KF  +++ + L R G +     D + + L R  V    +  ++ S+
Sbjct: 119 SMIVDMPQFQ-VDGKFDQEIYQASLRRAGFSP----DSFAEYLRRDLVRNQLLTAIQASD 173

Query: 177 LLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             L+       +   + R +  + L+     + A+ S   +  ++ +  + Y  PE  ++
Sbjct: 174 FSLEGEVEAQSKLLTQTREIKKVTLSLSDFASKAELSEQEINDYYTQNPERYTRPEQVKV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSL 290
           +Y+     + +  I++S+++ +  Y+++ +KY S E R V  ++     E  A      L
Sbjct: 234 AYVELSAQQLKDAIDVSDEQAKQYYQEHLDKYSSEEQRRVSHILIEGDDEAKAQAILDEL 293

Query: 291 KKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F  LAEE+    G +    SLG   ++ + D +  ++ F+L K GD T ++   F
Sbjct: 294 NAGADFATLAEEKSDDFGSASEGGSLGWIERD-VMDPAFEEAAFALKKAGDVTGLVKSDF 352

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEIS 405
           GY I  +  +K S    ++EV  +I  +++  +A ++  E   +LE        S+D+ +
Sbjct: 353 GYHIIKLDELKDSVAKPYEEVASEIKQELKDQQAIDQFYELQSQLETVAFEYPDSLDDAA 412

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
                +  ++   DF  +     E+   P   Q +     K+D L+ +     P+   + 
Sbjct: 413 ---DAIKAEIHTTDFISQ-ADAPELLKAPAVMQAILSPEVKEDGLNSEVIEVAPE-HVIV 467

Query: 466 VQIKESIPARDRK---LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
           V++++   ARD     L+EV   V      VK  +     A+ LV E  K  K+      
Sbjct: 468 VRVED---ARDETVLPLDEVREQVTTALAKVKGEQSAIKLADNLVAELKKGNKD------ 518

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVF------SGPVEMVKCFPIENGLSYVVFKV 576
                L+T N +   D+EN          VF      SG VE  +     NG   VV ++
Sbjct: 519 -----LMTENGLAFSDSENIDRSSPLADVVFSMKKPSSGQVEFAQAKDF-NG-DIVVVEL 571

Query: 577 TNSKVG-PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
           TN K     Q  ++  + LTQM  +  L  +I  L+
Sbjct: 572 TNVKSDVNAQYNEQIGTQLTQMNAQQDLSGLINILR 607


>gi|157146942|ref|YP_001454261.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Citrobacter
           koseri ATCC BAA-895]
 gi|157084147|gb|ABV13825.1| hypothetical protein CKO_02719 [Citrobacter koseri ATCC BAA-895]
          Length = 623

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 136/647 (21%), Positives = 289/647 (44%), Gaps = 46/647 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI   ++ V F++ G+S  L  + GS+   + V  Q++  S F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYL--IGGSNNYAAKVNDQEISRSQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYAHELKLSISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +  F   D KF ++ + + + + G+      D Y + L         + G+  +
Sbjct: 118 KQAIFSTAAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLIAGVAGT 172

Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           + +L    D+      + R V    ++   + A    ++  ++ ++E+ K+ +  PE  R
Sbjct: 173 DFMLKGETDELAALVAQQRVVREATIDVNALAAKQQATDQEVSSYYEQNKNRFMTPEQFR 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D    ++ +  ++ ++Q+ Y+++++++  P+      +    + EA     +L 
Sbjct: 233 VSYIKLDAAAMQETV--NDADIQSYYDQHQDQFTQPQRNRYSVIQTKTEDEAKAVLDALN 290

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYV 349
           KG  F  LA+E+   +     G     ++ D +  D +    L +KG  + VI  S G++
Sbjct: 291 KGGDFAALAKEKSADIISARNGG-DMGWLEDATTPDELKNAGLKEKGQLSGVIKSSVGFL 349

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRR 407
           +A + +++P+      E + DIA +++     EK  + Y  L++ ++   S D   ++  
Sbjct: 350 VARLDDVQPAKVKPLSEARDDIAAKVK----QEKALDAYYALQQKVSDAASNDTESLAGA 405

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV 466
           E+   +      +   D   +E+   P  + +    + G++     +  +   DG   +V
Sbjct: 406 EQAAGVKAVETGWFSHDNLPEELNFKPVADAIFNGGLVGENGTPGSNSDIITVDGDRAFV 465

Query: 467 -QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
            +I E  P   + L +V   V    K  K  ++    A++L++E  K GK    + K  G
Sbjct: 466 LRISEHKPEAVKPLADVKEQVAALVKHNKAEQQAKLDADKLLVEL-KAGKGAEAM-KAAG 523

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVTNSK 580
            S      ++R        G D +SQ       P +    + + N +  + V+  + + K
Sbjct: 524 LSFGEAKTLSRT-------GQDPVSQAAFALGLPEKDKPSYGVANDMQGNVVLLALDDVK 576

Query: 581 VG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            G  P ++K   +  +TQ   +   +++++ L+    + V D L Q+
Sbjct: 577 AGSMPEEQKKAMVQGITQNNAQITFEALMSNLRKAAKIKVGDALEQQ 623


>gi|284006425|emb|CBA71661.1| peptidyl-prolyl cis-trans isomerase D [Arsenophonus nasoniae]
          Length = 623

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 185/392 (47%), Gaps = 22/392 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ + F++ G+   L  + GSS  V  V    +       +
Sbjct: 1   MMDNLRTAANSLVLKIVFVIIILSFVLTGVGSYL--IGGSSNHVAKVNGTAISQVQLQQA 58

Query: 60  WKQELGMISQKIG----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           ++QE  ++ +++G     + +SE+   + L ++ L+ L+    L+Q+   +GL A   +V
Sbjct: 59  FQQEKQVLQERLGDQFAEIASSEQGMQM-LRRQALERLIGVTLLNQYSNQLGLTASDNQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             +I   P+F   D  F  + + + L++  +N  +      + L    +  M++      
Sbjct: 118 KQDIYNMPIFQ-TDGHFDSEKYRTILSQHNVNADDLAQEIRQNLINRQLSKMYI----TD 172

Query: 176 NLLLDQAKRFY----FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
             +L +  + Y     + R V    L+  +  +    ++  L  ++  +++++ +PE  +
Sbjct: 173 EFVLPEEVKSYAQLLLQQREVKTATLSLANYQSKQTVTDKELQDYYNAHQNSFISPEQVQ 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D   + + + + ++EL+  YE+N   +  P  +    +  P +KEAD   +SL 
Sbjct: 233 VSYIKLDAASQRENVAVKDEELKNYYEQNIANFTQPAQKHYSMIQLPTEKEADSVVKSLA 292

Query: 292 KGKKFIQL-AEEQGKSLSDISLGSFSKEYIPDVSLADSIFS--LAKKGDFTPVIHGSFGY 348
            G  F QL AE+     S  + G+    ++   S    I +  L KKG  + VI  +  Y
Sbjct: 293 GGADFKQLVAEKSTDKFSAANHGALG--WMEATSTPSEIIAANLTKKGQISAVIKSASNY 350

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           +I  + +IKP     FQ VK +IAN ++  KA
Sbjct: 351 IIFRLDDIKPEVVKPFQSVKTEIANTLKNEKA 382


>gi|58617080|ref|YP_196279.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
           ruminantium str. Gardel]
 gi|58416692|emb|CAI27805.1| Putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
           ruminantium str. Gardel]
          Length = 630

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 148/651 (22%), Positives = 288/651 (44%), Gaps = 59/651 (9%)

Query: 9   SRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           S+ + AK+ L+VL    +   +   LFS   S    V  +G++K+    F  ++  EL  
Sbjct: 3   SKAFFAKLLLIVLICSLISVSVGVPLFSNHFSNKQYVAKIGQEKLSIEDFTTAYHDELRY 62

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           I Q +   +  E+     +   +L+ L+    L +F   + L+     V   I     F 
Sbjct: 63  IQQLLNRPLTPEQIVQFNVKFSVLNRLIENKVLTKFANSLNLKVGEESVINFIKSIKYFQ 122

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQA 182
            ++  F    F + L+  G+ E+ YI         + ++    GG  P N  L    D  
Sbjct: 123 DENGNFDKKKFNAGLSNAGLTERLYISKLESAFPISIMMNCLFGG--PQNNYLQYYPDLT 180

Query: 183 KRF---YFENRSVDYIVLNNRHVPAIAD---PSNAVLTQWFEKYKDNYRA--PEYKRISY 234
           K+      ++R+VD I ++    P I D   P+   L   +E+ K N     PE + I Y
Sbjct: 181 KKILQNLHQSRTVDIIEIS----PVINDISIPNMEELKSLYEEKKKNNSLVFPESRDIEY 236

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           +  +      K  +S +E+ +E    K +    +I  +  LVF  + +A+ A   L  GK
Sbjct: 237 VTINYENFTTKATVSQEEIDSEI---KAEGLDDQIDIL-NLVFSAKSDAENALSELNNGK 292

Query: 295 KFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            F  +  +   S L  I+L + +K  +PD  + + +FSL K+G+ +P++H  FG+ I  V
Sbjct: 293 TFDSIVTDLAHSTLDKITLKNITKNTLPD-DIRNQVFSL-KEGEISPILHSMFGWHIIKV 350

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           +++        QE+ K I+  ++  KA++ +  + + + + +  GTS+ EI++   +  I
Sbjct: 351 TSVHKISEHDLQELNKKISQSIKKKKATDLLLAEIEIINDKINHGTSIKEIAKLYNL-PI 409

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
                D +G ++ GK+V+        +  + G    L++       +  +  V++ +   
Sbjct: 410 KTITTDISGYNLLGKKVSISEANSNSII-LTGFSSQLNQTSNFIDNEDYFFSVRVIKIDQ 468

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
           AR++  +E   ++  +W+    ++++ SK  Q +L   K G + +    N+   LL  NQ
Sbjct: 469 AREKTFDESKQELVDEWQNNFKSKKL-SKLTQEILIKLKSGIDIQ----NIDGVLLKPNQ 523

Query: 534 ------INRMDNENKFFGYDGISQVFS-GPVEMVKCF-----PIENGLSYVVFK------ 575
                 +  +DN  + +  + ++++F+    E+ K +     P E  +   V K      
Sbjct: 524 VVYRNSVASIDNPGQNYPSNLVNEIFNLKKGEISKNYYDEQNPSEQKMLIAVVKDIKNPE 583

Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            V+   +   QEK      L+    + L + +I YL ++YSV ++  LI+ 
Sbjct: 584 QVSTVDLKATQEK------LSNNNTESLKNQLITYLTNKYSVKINRKLIEN 628


>gi|332094597|gb|EGI99643.1| PPIC-type PPIASE domain protein [Shigella boydii 5216-82]
          Length = 623

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 182/390 (46%), Gaps = 20/390 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L     +      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETGELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
             + +I+P+   S  EV+ DIA +++  KA
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380


>gi|170727449|ref|YP_001761475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
 gi|169812796|gb|ACA87380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
          Length = 619

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 182/397 (45%), Gaps = 32/397 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  +AK  LV++ + F   G+S  L S S  +   +V  +++  S+   ++
Sbjct: 1   MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEAAAATVNGEEISESALEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A       + + +L+ LV+   LDQ   ++GL     ++  
Sbjct: 60  QSERARLEQQLGEMFEALAADDSYLASVKQSVLERLVAEKLLDQSATELGLRVSDEQIRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175
            I   P F   D KF +D + + L + G     + D     ++R  +V   VG   + PS
Sbjct: 120 AIMTEPAFQ-TDGKFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVASLVGSEFVLPS 178

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
               D       + R + Y V++     A A  S+     +++     + +PE   + YI
Sbjct: 179 EA--DYLAGIQGQTRDIRYHVIDATPYIAQAVVSDEDARAFYDANLAQFMSPETLSLEYI 236

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQ 288
             +  +    + ++++E Q  Y++NK++Y  PE R    ++          + +AD  + 
Sbjct: 237 ELNAKDMANDVVVTDEEAQTYYDENKQQYLKPEKRLAAHILVNLGDDESAAKAKADAIYA 296

Query: 289 SLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
            L+ G++F +LA+         EQG  L     G    E+       D +FSL+  G+++
Sbjct: 297 KLQAGEEFAELAKTESEDTFSGEQGGQLDWFEKGVMEPEF------DDVLFSLS-NGEYS 349

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
            V+  SFGY I  + +++P     F++VK  I  Q++
Sbjct: 350 AVVKTSFGYHIIKLLDLQPGAEAPFEDVKAKILAQLK 386


>gi|238751010|ref|ZP_04612506.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia rohdei ATCC 43380]
 gi|238710700|gb|EEQ02922.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia rohdei ATCC 43380]
          Length = 628

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 184/389 (47%), Gaps = 16/389 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+   V KI L ++ + F++ G+   L  + GS+   + V  Q++  +    +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRAQLEQA 58

Query: 60  WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            + E   + Q++G     + +       + +++L  LV+   LDQ+ + +GL A   +V 
Sbjct: 59  VQSERSRMQQQLGEQFSALAANEGYMQQMRQQVLGQLVNNMLLDQYAKKLGLTASDAQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174
             I ++P F   + KF +  +++ + + G    ++     + L    ++  F   G + P
Sbjct: 119 DAIRQAPYFQ-TEGKFDNSKYLALVNQMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177

Query: 175 SNLLLDQA-KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           +     QA      + R V    L+ + + A    ++  L  ++++ K+++ APE  +IS
Sbjct: 178 AEA---QAMSELILQQRDVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKIS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           +I  D    + KI ++ +++ A Y+ +K  Y  PE R    + F  + +A  A   LKKG
Sbjct: 235 FIAMDAAAMQDKITVTEEDITAYYDLHKSSYTQPEQRNYSVIQFKTEADAKAALDELKKG 294

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIA 351
             F  +A+E+   +     G       PD + AD +   +L+ KG  + V+  S GY+I 
Sbjct: 295 ADFATIAKEKSTDIISRKNGGELGWLEPDTT-ADELKQANLSDKGQLSDVVKSSVGYLIV 353

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKA 380
            +++IKP       EV   +A Q++  KA
Sbjct: 354 RLNDIKPEQVKPLSEVHDALAKQVKQEKA 382


>gi|323498280|ref|ZP_08103282.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sinaloensis DSM
           21326]
 gi|323316708|gb|EGA69717.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sinaloensis DSM
           21326]
          Length = 619

 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 120/529 (22%), Positives = 230/529 (43%), Gaps = 25/529 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   +   +G+ T   VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGAGN-TAAKVGNVEIGRGEFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++ +      K +LD +V+   ++Q  E +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLIEQHAETLGLRVSDAQVRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF  D++ + L R G   + + ++  + L R  ++            
Sbjct: 120 MIVEMPQFQA-DGKFDQDIYQASLRRAGFTPESFAEYLRRDLVRNQLLTAIQASDFSLAA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R V+ + L      A    S   +  ++E+    Y  PE  +++YI  
Sbjct: 179 EVEAQAKLLTQTREVETLTLPLSDFAAKVKLSEEDIQAYYEQNPQRYTRPEQVKVAYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
              + +  I IS ++ +  Y+++ +KY S E R V  ++    +Q +A      L  G  
Sbjct: 239 AAQQLKDAITISEEQAKKYYDEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGAD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LAEE+    G +    SLG   ++ + D +  ++ F L   G+ T ++   FGY I 
Sbjct: 299 FATLAEEKSDDFGSASEGGSLGWIERD-VMDPAFEEAAFGLNNVGEVTELVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRREKI 410
            +  +K S    + EV  +I  +++  +A ++  E    LE+       S+D+ +     
Sbjct: 358 KLDELKASVAKPYTEVAAEIKQELKDQQAIDQFYELQSELEKVAFEFPDSLDDAA---NA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           V   +   DF  +     E+   P   Q +     K+D L+ +     P+   + V++++
Sbjct: 415 VDAKIETTDFISQ-ADAPELLKTPAVLQAILSPEVKEDGLNSEVIEVAPE-HVIVVRVED 472

Query: 471 SIPARDRK---LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
              ARD     LEEV T V +    VK  +     A++LV E  KEGK 
Sbjct: 473 ---ARDETVLPLEEVRTQVTETLAKVKGEQSAIELADKLVAEL-KEGKQ 517


>gi|24111825|ref|NP_706335.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella flexneri
           2a str. 301]
 gi|30061943|ref|NP_836114.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella flexneri
           2a str. 2457T]
 gi|24050617|gb|AAN42042.1| putative protease maturation protein [Shigella flexneri 2a str.
           301]
 gi|30040187|gb|AAP15920.1| putative protease maturation protein [Shigella flexneri 2a str.
           2457T]
 gi|281599781|gb|ADA72765.1| putative protease maturation protein [Shigella flexneri 2002017]
 gi|332760732|gb|EGJ91020.1| PPIC-type PPIASE domain protein [Shigella flexneri 4343-70]
 gi|332761539|gb|EGJ91821.1| PPIC-type PPIASE domain protein [Shigella flexneri 2747-71]
 gi|332768363|gb|EGJ98547.1| PPIC-type PPIASE domain protein [Shigella flexneri 2930-71]
 gi|333008057|gb|EGK27533.1| PPIC-type PPIASE domain protein [Shigella flexneri K-218]
 gi|333021934|gb|EGK41182.1| PPIC-type PPIASE domain protein [Shigella flexneri K-304]
          Length = 623

 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 140/652 (21%), Positives = 285/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI       ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLVAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++ E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RVSEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|57239078|ref|YP_180214.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58579021|ref|YP_197233.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
           ruminantium str. Welgevonden]
 gi|57161157|emb|CAH58070.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417647|emb|CAI26851.1| Putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 630

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 148/651 (22%), Positives = 287/651 (44%), Gaps = 59/651 (9%)

Query: 9   SRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           S+ + AK+ L+VL    +   +   LFS   S    V  +G++K+    F  ++  EL  
Sbjct: 3   SKAFFAKLLLIVLICSLISVSVGVPLFSNHFSNKQYVAKIGQEKLSIEDFTTAYHDELRY 62

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           I Q +   +  E+     +   +L+ L+    L +F   + L+     V   I     F 
Sbjct: 63  IQQLLNRPLTPEQIVQFNVKFSVLNRLIENKVLTKFANSLNLKVGEESVINFIKSIKYFQ 122

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQA 182
            ++  F    F + L+  G+ E+ YI         + ++    GG  P N  L    D  
Sbjct: 123 DENGNFDKKKFNAGLSNAGLTERLYISKLESAFPISIMMNCLFGG--PQNNYLQYYPDLT 180

Query: 183 KRF---YFENRSVDYIVLNNRHVPAIAD---PSNAVLTQWFEKYKDNYRA--PEYKRISY 234
           K+      ++R+VD I ++    P I D   P+   L   +E+ K N     PE + I Y
Sbjct: 181 KKILQNLHQSRTVDIIEIS----PVINDISIPNMEELKSLYEEKKKNNSLVFPESRDIEY 236

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           +  +      K  +S +E+ +E    K +    +I  +  LVF  + +A+ A   L  GK
Sbjct: 237 VTINYENFITKATVSQEEIDSEI---KAEGLDDQIDIL-NLVFSAKSDAENALSELNNGK 292

Query: 295 KFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            F  +  +   S L  I+L + +K  +PD  + + +FSL K+G+ +P++H  FG+ I  V
Sbjct: 293 TFDSIVTDLAHSTLDKITLKNITKNTLPD-DIRNQVFSL-KEGEISPILHSMFGWHIIKV 350

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           +++        QE+ K I+  ++  KA++ +  + + + + +  GTS+ EI++   +  I
Sbjct: 351 TSVHKISEHDLQELNKKISQSIKKKKATDLLLAEIEIINDKINHGTSIKEIAKLYNL-PI 409

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
                D +G ++ GK+V+        +  + G    L++       +  +  V++ +   
Sbjct: 410 KTITTDISGYNLSGKKVSISEANPNSII-LTGFSSQLNQTSNFIDNEDYFFSVRVIKIDQ 468

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
           AR++  +E   ++  +W+    + ++ SK  Q +L   K G + +    N+   LL  NQ
Sbjct: 469 AREKTFDESKQELVDEWQNNFKSRKL-SKLTQEILIKLKSGIDIQ----NIDGVLLKPNQ 523

Query: 534 ------INRMDNENKFFGYDGISQVFS-GPVEMVKCF-----PIENGLSYVVFK------ 575
                 +  +DN  + +  + ++++F+    E+ K +     P E  +   V K      
Sbjct: 524 VVYRNSVASIDNPGQNYPSNLVNEIFNLKKGEISKNYYDEQNPSEQKMLIAVVKDIKNPE 583

Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            V+   +   QEK      L+    + L + +I YL ++YSV ++  LI+ 
Sbjct: 584 QVSTVDLKATQEK------LSNNNTESLKNQLITYLTNKYSVKINRKLIEN 628


>gi|289207782|ref|YP_003459848.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           K90mix]
 gi|288943413|gb|ADC71112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           K90mix]
          Length = 633

 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/407 (21%), Positives = 189/407 (46%), Gaps = 36/407 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  +  W+A + + ++ +PF +WGL +  F  SG      V    +      N  
Sbjct: 1   MLQAIRDRASGWLAYVIIGLITIPFAVWGLGE-YFGGSGPLVAAEVNGTDIQVRDVHNEA 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   +++  G  +  +     G+  + L+ L+    L Q  +  G +A    +  EI 
Sbjct: 60  RAQRDQMARMFGGQIPDDLLDEEGIRMQALETLIRQELLRQAADSAGFKAAGDSILREIR 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR----PSN 176
             P+F  +  +FS + +   L  + ++  ++     + + R+ ++    GG++    P++
Sbjct: 120 GMPVFQ-EGGQFSRERYAQLLNAQRLSPSDF----ERDIGRSIILSQLQGGIQATGFPAD 174

Query: 177 LLLDQAKRFYFENRSVDYIV--LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            L+D   R   + R   + +  +++   P + D  +  +  ++E  +D++   E  RI+Y
Sbjct: 175 ALVDDFSRLRNQTRVASWRIFPVDDFDQPDVVD--DKAIEAYYEANQDDFTTEERVRIAY 232

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----FQS 289
           +  D    E  +++S D+++  YE N+ +Y  PE+R V Q+   +  E  EA        
Sbjct: 233 LQLDPEALEDAVDVSEDDVRQHYEVNRSRYEEPELREVRQIRIQDTGEEGEAKINELRDR 292

Query: 290 LKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           L  G+ F +LAE         ++G SL +I+ G        D +L   IF+L  +G  + 
Sbjct: 293 LDDGEDFAELAEAYSEDSLSADRGGSLGEIARGDL------DRTLETIIFTL-PEGLISR 345

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
            +    G+ I  V++I+ +    F++V+ ++   +R  +++E+++ D
Sbjct: 346 PVRTDRGWFILEVTSIQEARPQPFEDVRDEVERDLR-DRSAEQMQID 391


>gi|110804469|ref|YP_687989.1| peptidyl-prolyl cis-trans isomerase [Shigella flexneri 5 str. 8401]
 gi|110614017|gb|ABF02684.1| putative protease maturation protein [Shigella flexneri 5 str.
           8401]
          Length = 623

 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 139/654 (21%), Positives = 283/654 (43%), Gaps = 60/654 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-IDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI       ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLVAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV--LEYSKEGKNFRDIGKNL 524
           ++ E  P   + L +V   VK   +  K  ++    A +L+  L+  K  +  +  G   
Sbjct: 467 RVSEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKF 526

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VV 573
           G   + +             G D ISQ  F+ P       P ++  SY          V+
Sbjct: 527 GEPKILSRS-----------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVL 569

Query: 574 FKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 570 LALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|88607320|ref|YP_505198.1| ppiC/parvulin rotamase family protein [Anaplasma phagocytophilum
           HZ]
 gi|88598383|gb|ABD43853.1| ppiC/parvulin rotamase family protein [Anaplasma phagocytophilum
           HZ]
          Length = 601

 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 103/469 (21%), Positives = 218/469 (46%), Gaps = 18/469 (3%)

Query: 35  FSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93
            S SG+   V+ +G + +P   +   ++ EL  + + +   ++  +    G+ + +L N+
Sbjct: 4   LSNSGNGQCVAMLGNKCLPLRDYRIMYRNELAELEKMLQHKLSDAQINQFGIKEVVLKNM 63

Query: 94  VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
           ++   +++F  D+G+      +   I    +F   +  F  + + + LA  G+ E  Y++
Sbjct: 64  IADMVVEKFAHDLGIRVGSNSLRSLIKNIRIFQDANGVFDQERYEAVLADSGMTESSYVN 123

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVP-AIAD 207
                L  T ++          ++     L         ++R  D + +++  V  + +D
Sbjct: 124 KIRNALPSTILMECLFPNRAELHIPYYDALAKDVVLGLLQHRVADIVEISSDAVDISGSD 183

Query: 208 PSNAVLTQWFE-KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
            S+  L + FE +YK++   PEY+   YI+    +    + +S+ E+  E  KN E +  
Sbjct: 184 ISDDELQKLFEEQYKNSLNFPEYRSADYIIMAEDDLLADVIVSDQEVDVEI-KNSELH-- 240

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
            + R V  LVF ++ EA+ A+++ ++GK F +L  + G ++ DI+L + SK+ +P V + 
Sbjct: 241 -DQRDVLNLVFTDKNEAELAYKAYQEGKSFEELVSDAGYTIEDIALNNISKDVLP-VGVR 298

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           + +F+L  +G+ + +     G+ I  V           +++K+ I++ +R  KA E +  
Sbjct: 299 NVVFAL-NEGEVSEMFRSVVGWHIMKVIRKHEITKEDLEKLKEKISSNIRRQKAGELLVS 357

Query: 387 DYKRLEEFLALGTSMDEISRR--EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL-LFRV 443
           + K+  + ++ G S++E+      +I  + L   D  G D  G  V   P +  +  F  
Sbjct: 358 NVKKANDMISRGASLNELKDMFGARISGV-LTNFDMHGLDKSGNLVKDFPLQLGINAFTT 416

Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
                 + K   +     +Y  V + E +P R R LEE  + + ++WK+
Sbjct: 417 LAFSSAVGKPSHLVSNGDAYFGVLVTEVVPPRPRTLEESRSILTEEWKS 465


>gi|333008127|gb|EGK27602.1| PPIC-type PPIASE domain protein [Shigella flexneri VA-6]
          Length = 623

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 182/390 (46%), Gaps = 20/390 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI       ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLVAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
             + +I+P+   S  EV+ DIA +++  KA
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380


>gi|16126137|ref|NP_420701.1| rotamase family protein [Caulobacter crescentus CB15]
 gi|221234908|ref|YP_002517344.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
 gi|13423343|gb|AAK23869.1| rotamase family protein [Caulobacter crescentus CB15]
 gi|220964080|gb|ACL95436.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
          Length = 654

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 128/597 (21%), Positives = 245/597 (41%), Gaps = 23/597 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML   RK +++  A +   +L V F I+G+SD      GS  V+S G + +    F   +
Sbjct: 1   MLAGFRKFAKSPFAVVLFGLLIVSFAIFGISDVFKGPQGSG-VISAGSRSMSAIDFKQRF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG------LEADHGR 114
                 + Q+ G  +  ++A   G+D++I+  LV   +L   +  +G      L AD   
Sbjct: 60  DNYRKAMEQQNGTTLTPDQAVEQGVDRQIVQELVLQESLAAALHKMGVAPSDKLVADT-- 117

Query: 115 VWGEIARSPL----FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
           V  ++++ P     F     KF    + + + + G+  + Y       +++T        
Sbjct: 118 VHEQMSQLPPTTRPFDPITGKFDSRAYATLMQQNGLTPETYEASLRDEIAQTHFFSAIAD 177

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
           G++   +       +  E R V   V+N   V     P++A LT + ++  D    PE +
Sbjct: 178 GLKAPRIYAALQGAYLLEAREVSAFVVNPSTVQRPNPPTDAQLTAFMKENADRLTRPETR 237

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            +S +       E  + I+  ++Q  ++  K+    PE RT+ Q+  P+ K A    Q L
Sbjct: 238 VLSIMRVSATALEPSVTINPADVQKAFDFRKDSLARPETRTIVQIAAPDAKAAAVISQRL 297

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            KG+    +A+  GK  + + L    K  +PD  +AD+ F+L + G  +  I G  G  +
Sbjct: 298 GKGEDPAAVAKAYGK--TPLVLTDKPKSAVPDRKVADAAFAL-QTGQVSGPIIGDLGVAV 354

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
             V+ I P    +   V+  I  ++R   A  K  E  +  ++    G  +   + +   
Sbjct: 355 VKVTKITPGAVATLDSVRPQIEAEVRSQTAQAKAYEQTQTYQDARDAGADLISAASKAGA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           + I    V   G D  G+  A +     ++   F       +   V    G Y  V+++ 
Sbjct: 415 LVITTAPVTAQGTDQMGQPFAGL--TPDIIKTAFDLSQG-GESELVEAGKGEYYAVKVER 471

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL- 529
            +PA    L EV   +   W   + A+ + +KA++L     K+G++   +     +++  
Sbjct: 472 IVPAALPPLAEVKPQLTAVWFGQEMAKRMKAKADELAARV-KKGESLEAVATAAQSNVQK 530

Query: 530 TTNQINRMDNENKF-FGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
               + R + +     G + +   F+  P  +      + G +YVV K+   +  P 
Sbjct: 531 IPGGLTRQNAQQHVALGQEFLGAAFTAKPGAVFTARAGQQGQAYVVAKLDAVRAAPT 587


>gi|238919016|ref|YP_002932530.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella
           ictaluri 93-146]
 gi|238868584|gb|ACR68295.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 626

 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 175/393 (44%), Gaps = 24/393 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V K+ L ++ + F++ G+ + L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSGD-YAAKVDGQEIGRAQLEQAV 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G    V+         L K++L  ++    LDQ+ + + L     +V  
Sbjct: 60  QNERSRLQQQLGDQFSVLAGNEGYMKELRKQVLSRMIDDVLLDQYAKKLNLAISDAQVKE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   DN F +  ++  +AR G++     D Y +++ +  V    + G   +  
Sbjct: 120 AIRAMPYFQ-SDNHFDNAKYLDMVARLGLSP----DTYAQLVRQQLVTQQLIQGFTATGF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            L    +       + R V    ++   +  +   S+A L  ++++++ ++ APE  ++ 
Sbjct: 175 TLPAEVNALAALTMQQRQVSLATIDISKLMPLQQVSDAELQGYYQQHQSSFIAPETVKVR 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D      K+ +SN E+ A Y+++K  +  P       +    + EA      L  G
Sbjct: 235 YIEMDAAAINDKMTVSNAEISAYYDQHKGSFTQPARSDYSVIQVKTEAEAKAIAGQLASG 294

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  LA+E  KS   IS      LG   +E  PD   A     L+ KGD +  I  S G
Sbjct: 295 ADFATLAKE--KSTDIISRKNGGELGWLEQETTPDEIRA---AKLSHKGDVSAPIASSVG 349

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           Y+I  ++ I+P+      EV+ +IA++++  KA
Sbjct: 350 YLIVRLNGIQPAVVKPLSEVRAEIADKVKQQKA 382


>gi|212636023|ref|YP_002312548.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
 gi|212557507|gb|ACJ29961.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
          Length = 619

 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 195/420 (46%), Gaps = 44/420 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57
           MLE IR+ S+  +AK  LV++ + F   G+S  L    GSST V   +V  +++  S+  
Sbjct: 1   MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYL----GSSTEVAAATVNGEEISNSALE 56

Query: 58  NSWKQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +++ E G + Q++G + ++  A       + + +L+ LV+   LDQ   ++GL     +
Sbjct: 57  QAYENERGRLEQQLGDMFSTLSADDNYMQSVKQSVLERLVAEKLLDQNAAELGLRVSDEQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   I + P F   D +F +D + + L + G     + D     ++R  +V   VG    
Sbjct: 117 IRTAIMQEPAFQ-TDGRFDNDRYQAILRQLGYQANSFRDMMRVDMTRRQLVATLVG---- 171

Query: 175 SNLLLDQAKRFYF----ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
           S  +L     +      + R ++Y+V+++    A A  ++  +  ++      +  PE  
Sbjct: 172 SEFVLPGEAEYLANIQGQTRDINYLVIDSTPFLAAASVTDEQIQTYYNSNLGQFVRPEIV 231

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF----PNQKEADEA 286
            ++YI  D  +    + ++  + +  Y++NK +Y  PE R    ++      N +E  EA
Sbjct: 232 SLNYIELDAKQLAADVTVTEADAKTYYDENKVQYLQPEKRLAAHILIGLDEDNAEEKAEA 291

Query: 287 -FQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
            +Q L+ G+ F  LA+         EQG  L     G    E+  D +L    F+L  KG
Sbjct: 292 IYQKLQNGEDFAALAKAESQDTFSGEQGGQLDWFEAGVMEPEF--DAAL----FAL-DKG 344

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
            ++ V+  +FGY I    +I+      F +VK+ I  Q++  +A +K  E    L++ LA
Sbjct: 345 SYSNVVKTNFGYHIIKALDIQAGAEAPFADVKEKIIAQLQEQQAVDKFYE----LQQVLA 400


>gi|167646732|ref|YP_001684395.1| rotamase family protein [Caulobacter sp. K31]
 gi|167349162|gb|ABZ71897.1| rotamase family protein [Caulobacter sp. K31]
          Length = 655

 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 113/557 (20%), Positives = 230/557 (41%), Gaps = 26/557 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP--FSSFIN 58
           ML   R  +++ +A +   +L V F ++G+SD      G   + +  R   P  F +   
Sbjct: 1   MLAGFRSFAKSPLAVVLFGLLIVSFAVFGISDVFRHPPGKWVIAAGSRDTTPADFKARFE 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           S++++     Q  G  +  + A   G+D+++L  L    +L + I  +G+     ++ G+
Sbjct: 61  SYRKQ----QQAQGQTLTPDLAVEHGVDRQMLTQLALQESLAELIRKMGVRPSD-KLVGD 115

Query: 119 IARSPL---------FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
             R  L         F   + KF   ++ + LA+  +    Y       +++  +     
Sbjct: 116 TLREQLASLPPGQRPFDPINGKFDSKMYAALLAQNDLTPARYEASLRDEIAQAHLFSAVA 175

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
             +R   +       +  E R +    +N   V   A P++A L  + +++  +   PE 
Sbjct: 176 TSLRAPRIYSALQAAYALEGRDLAAFAINPATVEKPAPPTDAQLQAFMKEHAADLTRPET 235

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           + +S   F     E  + +   ++   Y   K+   + E R+  Q+V P+ K A    Q 
Sbjct: 236 RVLSVARFSAKALENSVTVPEADVVKTYNFRKDTLGTAETRSFVQIVAPDAKAAAVIAQR 295

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           L KG +   +A   GK    + + +  K  +PD  +AD++F+L   G  +  I G  G  
Sbjct: 296 LAKGDQPAVVASAFGK--QPVFIDTKPKSALPDRKVADAVFAL-TAGQVSAPITGDLGVS 352

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           +  ++ I P+   S +  +  I  +++   A  K  E  +  ++    G S+ + + +  
Sbjct: 353 VVKLTKITPAAMPSLESQRPAIEAELKAQAAQAKAYEQTQAYQDAHDAGASLIDAATKAG 412

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAI-PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
            + +    +   G D  G+ V  + P   +  F +    +       +    G Y  V++
Sbjct: 413 ALVLTTSPIAATGVDQTGQPVPGLTPDAVKAAFELPSGGE----SELIEAGKGEYFAVRV 468

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
           ++ IP+    L E+   + + W   K  E + +KA+ L  E  K+G++   +  + G  +
Sbjct: 469 EKVIPSAMPALAEIRGPLAQQWMVTKLLEAMKAKADALG-ERVKKGESLEAVAASAGTKV 527

Query: 529 LTTNQINRMDNENKFFG 545
                INR +N  +F G
Sbjct: 528 QRVPNINR-ENARQFQG 543


>gi|14582889|gb|AAK69701.1|AF356511_1 putative peptidyl-prolyl cis-trans isomerase D [Anaplasma
           phagocytophilum]
          Length = 575

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/494 (21%), Positives = 222/494 (44%), Gaps = 19/494 (3%)

Query: 11  TWV--AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
            WV  A +   + FV F        L +      V  +G + +P   +   ++ EL  + 
Sbjct: 8   VWVVMATVLGAMAFVTFGSMIPMGKLSNSGNGQCVAMLGNKCLPLRDYRIMYRNELAELE 67

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
           + +   ++  +    G+ + +L N+++   +++F  D+G+      +   I    +F   
Sbjct: 68  KMLQHKLSDAQINQFGIKEVVLKNMIADMVVEKFAHDLGIRVGSNSLRSLIKNIRIFQDA 127

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-----LLDQAK 183
           +  F  + + + LA  G+ E  Y++     L  T ++          ++     L     
Sbjct: 128 NGVFDQERYEAVLADSGMTESSYVNKIRNALPSTILMECLFPNRAELHIPYYDALAKDVV 187

Query: 184 RFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFE-KYKDNYRAPEYKRISYILFDVHE 241
               ++R  D + +++  V  + +D S+  L + FE +YK++   PEY+   YI+    +
Sbjct: 188 LGLLQHRVADIVEISSDAVDISGSDISDDELQKLFEEQYKNSLNFPEYRSADYIIMAEDD 247

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
               + +S+ E+  E  KN E +   + R V  LVF ++ EA+ A+++ ++GK F +L  
Sbjct: 248 LLADVIVSDQEVDVEI-KNSELH---DQRDVLNLVFTDKNEAELAYKAYQEGKSFEELVS 303

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           + G ++ DI+L + SK+ +P V + + +F+L  +G+ + +     G+ I  V        
Sbjct: 304 DAGYTIEDIALNNISKDVLP-VGVRNVVFAL-NEGEVSEMFRSVVGWHIMKVIRKHEITK 361

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR--EKIVSIDLPLVD 419
              +++K+ I++ +R  KA E +  + K+  + ++ G  ++E+      +I  + L   D
Sbjct: 362 EDLEKLKEKISSNIRRQKAGELLVSNVKKANDMISRGALLNELKDMFGARISGV-LTNFD 420

Query: 420 FAGKDVKGKEVAAIPYKEQL-LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
             G D  G  V   P +  +  F        + K   +     +Y  V + E +P R R 
Sbjct: 421 MHGLDKSGNLVKDFPLQLGINAFTTLAFSSAVGKPSHLVSNGDAYFGVLVTEVVPPRPRT 480

Query: 479 LEEVLTDVKKDWKT 492
           LEE  + + ++WK+
Sbjct: 481 LEESRSILTEEWKS 494


>gi|238898000|ref|YP_002923680.1| PPIC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465758|gb|ACQ67532.1| PPIC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 624

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 120/535 (22%), Positives = 234/535 (43%), Gaps = 39/535 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E  R +++    KI L  + + F+  GL  + F    +  V  V  +K+  +    + 
Sbjct: 1   MMEYFRTSTKNLTLKIILFFIVLSFIAGGLG-SYFIGRATDYVAKVNGEKISRAQLEQAL 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G     +   +     L KK++D L++   + Q+   +GL+ D   V  
Sbjct: 60  QNERHRLKQQLGEHFLALADNKDYMQQLRKKVIDQLINQILIVQYTHHLGLKIDDEHVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I +   F   DN+F +  +++ ++  G    E+ +   + L    ++ +F        +
Sbjct: 120 TIRKMSYFQ-TDNQFDNKKYLNLISNMGYTPDEFAELQRQQLINDQLLQIFGNS---EFV 175

Query: 178 LLDQAKR---FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           L ++ KR      + R V    LN          ++  +  +++K K+ +  PE  ++S+
Sbjct: 176 LPNEIKRISALLLQKRHVRLATLNLNTFQNRQKVTDEEIKDYYDKNKNTFTNPEQVKVSF 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           I+ D    E KI ++  E++  YE++  ++  PE++    +    +KEAD     LKKG 
Sbjct: 236 IIMDAESMENKITVNKSEIKDFYEQHSAEFIQPELKNYSVIQLKTKKEADTTLDKLKKGA 295

Query: 295 KFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSF 346
            F  LA  + KS+  IS      LG       PD ++ D I   +L +KG  + VI  S 
Sbjct: 296 LFSDLA--KNKSIDSISRKKGGQLGWLE----PDTTV-DEIKQANLTEKGQLSGVIESST 348

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           GY I  +++IKPS+      V+  +  +++  KA +      K++ E  A+  +   ++ 
Sbjct: 349 GYFIFRLNDIKPSYVKPLSIVRNQLIEKIKQEKAIQAYYVLQKKVSE--AMINNHKSLAS 406

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT------VALPD 460
            E +  +      F G++    E+   P    ++  +F  D    K  T      + L  
Sbjct: 407 AETVSGLKAQHTAFFGRNDVPSELNIKP----VIKAIFDGDWVAKKTQTGSDADMINLDG 462

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
              + +++ E  P R   L++V   V+K  +  K  +++  +  +  L   KEGK
Sbjct: 463 DRAVVIRVDEHKPKRIEPLKKVRDKVQKQIRAQKAQKQILVEGEKF-LAALKEGK 516


>gi|237730418|ref|ZP_04560899.1| peptidyl-prolyl cis-trans isomerase [Citrobacter sp. 30_2]
 gi|226905957|gb|EEH91875.1| peptidyl-prolyl cis-trans isomerase [Citrobacter sp. 30_2]
          Length = 624

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 137/647 (21%), Positives = 285/647 (44%), Gaps = 46/647 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNFAAKVNGQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ LV  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLVDEALLDQYSRELKLNISDDQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D KF ++ + + + + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+
Sbjct: 174 FMLKGETDELAALVAQQRIVREATIDVNALAAKQSVTEQEVASYYEQNKNNFMTPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++    S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAAAMQETA--SDADIQSYYDQHQDQFTQPQRNRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D +  D +    L +KG  + VI  S G+++
Sbjct: 292 GGDFAALAKEKSADIISARKGG-DMGWLEDSTTPDELKNAGLKEKGQLSGVIKSSVGFLV 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408
           A + +++P+      E + +IA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 ARLDDVQPAQVKPLSEARDEIAAKVK----QEKALDAYYALQQKVSDAASNDNESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWV 466
           +   +      +  +D   +E+   P  + ++F   + G++     +  +   DG   +V
Sbjct: 407 QAAGMKAVETGWFSRDSLPEELNFKPVAD-IIFNGGLVGENGTPGSNSDIITVDGDRAFV 465

Query: 467 -QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
            +I E      + L EV   V    K  K  ++    A++L+ +  K GK    + K  G
Sbjct: 466 LRIAEHKAEAVKPLAEVKEQVTALVKHNKAEQQAKLDADKLLADL-KAGKGDEAM-KAAG 523

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSG---PVEMVKCFPIENGL--SYVVFKVTNSK 580
            S      ++R        G D +SQ   G   P +    + + N +  + V+  +   K
Sbjct: 524 LSFGEAKTLSRT-------GQDPLSQAAFGLSLPAKDKPSYGVANDMQGNVVLLALDEVK 576

Query: 581 VG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            G  P  +K   +  +TQ   + + +++++ L+    + + D L Q+
Sbjct: 577 AGSMPEAQKKAMVQGITQNNAQIVFEALMSNLRKAAKIKIGDALEQQ 623


>gi|126173842|ref|YP_001049991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
 gi|125997047|gb|ABN61122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
          Length = 621

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 151/665 (22%), Positives = 276/665 (41%), Gaps = 95/665 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57
           MLE IR  S+  +AK  LV++ + F   G+S  L    GS+T V    V    +  +   
Sbjct: 1   MLEKIRDGSQGLIAKGILVLVILSFAFAGVSSYL----GSTTDVPAAEVNGDIITKAELE 56

Query: 58  NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +++ E   + Q++G     ++++      + + +L+ LV+   +DQ  + +GL     +
Sbjct: 57  QAYQSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   +   P F   D KF +D + + L + G   + + D     ++R  +    VG    
Sbjct: 117 IIAAVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVG---T 172

Query: 175 SNLLLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
             +L  +AK+      + R V Y+V+++    A A  ++  +  +++  +  + +PE   
Sbjct: 173 EFVLAGEAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVS 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPN----------- 279
           + Y+  +  +  K   +S++E QA YE++K +Y S E R     LV P            
Sbjct: 233 LEYVELNAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAE 292

Query: 280 ----QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
               Q ++   F  L K      L+ EQG  L     G      + D +   ++F+L  K
Sbjct: 293 DLAKQLDSGADFADLAKANSDDTLSAEQGGKLDWFEPG------VMDPAFDAALFAL-NK 345

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G  + V+   FG+ I  + +++P  TV F +VK  I  Q+          +D K +++F 
Sbjct: 346 GQHSAVVKTDFGFHIIKLLDVQPGVTVPFADVKAKIVAQL----------QDKKAVDQFY 395

Query: 396 ALGTSM--------DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
           +L + +        D +S   K V +D+       +D     V A   K  L+   F + 
Sbjct: 396 SLQSKLADTSYEVPDTLSETAKAVGVDIKTTPLFSRD----NVPAALNKPDLVKAAFSET 451

Query: 448 DPLS--KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
             L       + L     + V++KE   A    L EV  ++ +  K  +  E   +KA +
Sbjct: 452 VMLKGLNSEVIELEPNHVVVVRVKEHHDAGTLALAEVKANIAERLKQDQANEAARAKAQE 511

Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINR--MDNENKFFGYDGISQVFSGPV----EM 559
           L+ +  K G    D+G      L+   ++ R   D +    G     + F  P      +
Sbjct: 512 LMAQV-KAGAT--DLG------LVAKAKLGRGAQDVDAAIVG-----KAFQMPTPSTSPV 557

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN--------KDLLDSVIAYLK 611
           V    + NG + V     N+  G     D+ ++ L Q +N        + L+DS+ A  K
Sbjct: 558 VDTVGLANGYAVVALDKVNAAEGV---SDELVNALKQRLNAQYSEADYRGLIDSLKANAK 614

Query: 612 SQYSV 616
             Y V
Sbjct: 615 VLYPV 619


>gi|329889376|ref|ZP_08267719.1| rotamase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328844677|gb|EGF94241.1| rotamase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 643

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 128/573 (22%), Positives = 241/573 (42%), Gaps = 52/573 (9%)

Query: 8   ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
           A   W A +F +++   FLI G    +F+  G   ++S G + V  + F   +++    +
Sbjct: 9   AKSKWAAGLFALIILS-FLIVGAQSDIFANLGPRHIISAGDRSVDSNQFRGDFERVRANL 67

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
            ++ G  V+ +      L ++ LD+         +    G+      V  EI + P F  
Sbjct: 68  QEQAGRPVSYDDMVKENLHQQYLDSQTQRLGFLDWAYKAGIRPGKELVLAEIRKIPAFFN 127

Query: 128 K-DNKFSHDVFVSRLAREGIN----EKEYIDHYTKMLSRTDVVG--MFVGGMRP---SNL 177
           +   +F  D++   LA++ +     E++  D Y      T  VG  +F G   P   + L
Sbjct: 128 QITGQFDKDLYAQALAQQNLTSEMLEQDLRDQYV-----TSHVGSAVFAGLQAPRVYAAL 182

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L  QA     E R   +  +          P++A LT + ++ +   R+PE++ IS +LF
Sbjct: 183 LAGQA----LETRDGRWFSVTQDMAGRAGAPTDAQLTAFMKENEARLRSPEFRMISLVLF 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                + +  ++ +++Q  YE  K     PE RT   L  P ++ AD+    L+ GK   
Sbjct: 239 TPGPNDPRPTVTEEQIQERYEFRKAALADPEKRTFVTLTVPTKEAADKIAADLRAGKAPA 298

Query: 298 QLAEEQGKSLSDISLGSF---SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           ++A+      ++I LG +    +  + D ++  ++F LA      P I G  G+ +A ++
Sbjct: 299 EVAKA-----NNIQLGDYKATPQAAVGDPAVGAAVFGLAVDQVSAP-IQGRLGFTVAKLA 352

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVK-EDYKRLEEFLAL---GTSMDEISRREKI 410
            I+    V+ +  +  +  +++    +E VK   Y ++E+F      G ++ + +   K 
Sbjct: 353 AIQAGQAVTLESARPALTQELQ----AEAVKAATYAKVEQFEKARQEGKNLADAATAAKA 408

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             I LP     G+   G+ + A     Q+L   +        D  +   DG Y  V++ +
Sbjct: 409 RVIQLPPFTQQGQLPDGQPMNA---PRQVLESAYTLTKGGESD-VIDAGDGQYFAVRLDD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P+    L+EV   + + W   + A  +S+KA QL     + G++   +    GA L  
Sbjct: 465 IRPSALPTLDEVRAPLGQQWTLRENARLLSAKAEQLAGRV-RAGEDIAKVAAEAGAPLTV 523

Query: 531 TNQINRMDNENKFFGYDGI---------SQVFS 554
              + +        G DG+          QVFS
Sbjct: 524 RTGVQQSRESQAQVG-DGVLRGLFGQSKGQVFS 555


>gi|197284031|ref|YP_002149903.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis HI4320]
 gi|194681518|emb|CAR40403.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis HI4320]
          Length = 625

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 131/539 (24%), Positives = 249/539 (46%), Gaps = 47/539 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ IR  +     KI L V+ + F++ G+   LFS SG +    V   K+  +    ++
Sbjct: 1   MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFS-SGVNDAAEVNGYKISRAQLEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVG---LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +Q    + + +G    S  +   G   + ++ L+ L++ A LDQF +++G+ A   ++  
Sbjct: 60  QQRRAQLQKDMGDNFASLASSDEGQKMIRQQALNVLINQALLDQFAQELGISAGDQQIRD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +  +V  L    I+     D + + + +  +       ++ ++ 
Sbjct: 120 AIFALPYFQ-TDGKFDNKKYVELLTANNIDA----DAFAEGIRQNLINQQLRYSIQGTDF 174

Query: 178 LLD-QAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            L+ + K F     ++R+V    L+ +        S+  L  ++++    + AP   ++S
Sbjct: 175 ALESEVKDFAGLMLQSRNVRLASLDIQPFLEKETVSDEELKAFYDQNTSMFIAPAQVKVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  +  +    I IS+DE++A Y+ N  ++  P  +    LV  ++  A EA  +LK G
Sbjct: 235 YIQLEAQKDLSNITISDDEVKAYYDSNISEFTVPGQKKYSLLVLADETAAKEAEDALKNG 294

Query: 294 KKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             F+ L +E         Q  SL  I++G    + +P+++ A    SL +KG  +  +  
Sbjct: 295 ADFVTLVKEKSIDTFSAKQDGSLGWITIG----QELPELANA----SLTEKGQISQPVKI 346

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE- 403
           S GY I  + +IKPS    F ++K D+  +MR  KA     +D+  L++ ++   S D  
Sbjct: 347 SNGYAIFRLDDIKPSVVKPFDDIKADLLVKMRENKAI----DDFFALQQKVSQAASNDND 402

Query: 404 -ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK---DD--PLSKDH-TV 456
            ++   K  ++ +   D+  ++     V A    E+L   +FG    DD  P   +   V
Sbjct: 403 TLATAAKAGNVTVINTDWFDEN----NVPAALNNEKLTQLIFGGSLVDDNGPTGMNSDMV 458

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
            L + S   V+++   PA  + L++V   V    K  K ++ ++++A +L L   KEGK
Sbjct: 459 TLGNDSAYIVRVEGYKPASTQPLDKVRDKVITLVKQQKASQAMNAQAQKL-LAALKEGK 516


>gi|149192497|ref|ZP_01870682.1| peptidyl-prolyl cis-trans isomerse D [Vibrio shilonii AK1]
 gi|148833670|gb|EDL50722.1| peptidyl-prolyl cis-trans isomerse D [Vibrio shilonii AK1]
          Length = 432

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 176/387 (45%), Gaps = 16/387 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E IR+   +   KI L ++ + F+  G+   +    G+ T   VG  ++    F  ++
Sbjct: 1   MMERIREGVNSIAVKIILGLIILSFVFAGVGSYIAGGIGN-TAAKVGNVEIGRGEFEQAY 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++   + +      K +LD +++   L+Q  E +GL     ++  
Sbjct: 60  QNERNRMQSQLGDYFSTLLGDPSYVASFRKSVLDRMINDVLLEQHAESLGLRISDAQIRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175
            I   P F   D KF  D++ + L R G +   + ++  + L R  ++    G     PS
Sbjct: 120 MILEMPQFQ-NDGKFDQDIYQATLRRAGFSADSFAEYLRRDLVRNQLLTALQGSEFTLPS 178

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            + L    +   + R +  + L+       A  ++  + +++E+    +  PE  +++YI
Sbjct: 179 EIELQ--SKLLTQTRDIKTLTLSLADFSKKAQITDEEIQKYYEENPGQFTRPEQVKVAYI 236

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLKKG 293
                  + ++++++DE+Q  Y+++ +KY + E R V  ++     E  A      L  G
Sbjct: 237 ELSAQALKDQVKVTDDEIQKYYDEHLDKYSTSEQREVSHILVQGDDEAKAQAILDELNAG 296

Query: 294 KKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
             F  LA+E+    G S    SLG   ++ + D +  ++ F+L   GD T ++   FGY 
Sbjct: 297 ADFATLAKEKSEDIGSSEEGGSLGWIERD-VMDPAFEEAAFALKNVGDTTGLVKSDFGYH 355

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMR 376
           I  +  IK S +    EVK +I  +++
Sbjct: 356 IIKLDAIKASESKPLAEVKDEIIAELK 382


>gi|56479244|ref|YP_160833.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
 gi|56315287|emb|CAI09932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
          Length = 633

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 185/408 (45%), Gaps = 32/408 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + +R   R  +A+I L +L VPF  +GL     S  G + + +VG  K+  + F  + 
Sbjct: 1   MFDAVRNNKR--IAQIILALLIVPFAFFGLDSYFTSGPGGNEIATVGGSKISMNEFDQAL 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   + Q +G  V+     S  + + +++NLV+   L     D GL     ++   IA
Sbjct: 59  RDQQDRLRQSMGGQVDRAMLESEAMRRSVVENLVNQRLLAMHAADSGLVVTQQQLQQVIA 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  +D +FS + + + +  +G+    +     + L R   V + VG     +    
Sbjct: 119 TVPAFQ-EDGRFSLERYEAAVRAQGMTPAMFEARLGQDL-RVQQVALAVG----QSAFTA 172

Query: 181 QA--KRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           QA  +RF     E R V  +  +     A  +  +    ++++   + +  P   R  Y+
Sbjct: 173 QASVQRFLEAQLEERKVSELKFSPDAFLAQVELPDDAAKKYYDANPERFERPARLRAEYL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------------PNQKE 282
           +FD +   K++ +S+DE++  YE N  ++  PE R    ++               ++K 
Sbjct: 233 VFDENALLKQVSVSDDEIRKFYEANTARFGQPEERNARHILIEAAADAPAEEVAKASEKA 292

Query: 283 ADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           A    Q     ++F +LA    ++ G +     LG F +  +   S  D++FSL +KG  
Sbjct: 293 AALLAQVRANPERFAELAKAESQDPGSAARGGELGFFGRGAMVK-SFEDAVFSL-EKGQI 350

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           + V+   FG+ I  V +IKP+    F+EV+ +IA +++   AS ++ E
Sbjct: 351 SDVVRSDFGFHIIQVVDIKPAKARPFEEVRDEIAEELKRQAASRRLAE 398


>gi|304409715|ref|ZP_07391335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS183]
 gi|307304071|ref|ZP_07583824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           BA175]
 gi|304352233|gb|EFM16631.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS183]
 gi|306912969|gb|EFN43392.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           BA175]
          Length = 621

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 151/665 (22%), Positives = 276/665 (41%), Gaps = 95/665 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57
           MLE IR  S+  +AK  LV++ + F   G+S  L    GS+T V    V    +  +   
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYL----GSTTDVPAAEVNGDIITKAELE 56

Query: 58  NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +++ E   + Q++G     ++++      + + +L+ LV+   +DQ  + +GL     +
Sbjct: 57  QAYQSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   +   P F   D KF +D + + L + G   + + D     ++R  +    VG    
Sbjct: 117 IIAAVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVG---T 172

Query: 175 SNLLLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
             +L  +AK+      + R V Y+V+++    A A  ++  +  +++  +  + +PE   
Sbjct: 173 EFVLAGEAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVS 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPN----------- 279
           + Y+  +  +  K   +S++E QA YE++K +Y S E R     LV P            
Sbjct: 233 LEYVELNAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAE 292

Query: 280 ----QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
               Q ++   F  L K      L+ EQG  L     G      + D +   ++F+L  K
Sbjct: 293 DLAKQLDSGADFADLAKANSDDTLSAEQGGKLDWFEPG------VMDPAFDAALFAL-NK 345

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G  + V+   FG+ I  + +++P  TV F +VK  I  Q+          +D K +++F 
Sbjct: 346 GQHSAVVKTDFGFHIIKLLDVQPGVTVPFADVKAKIVAQL----------QDKKAVDQFY 395

Query: 396 ALGTSM--------DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
           +L + +        D +S   K V +D+       +D     V A   K  L+   F + 
Sbjct: 396 SLQSKLADTSYEVPDTLSETAKAVGVDIKATPLFSRD----NVPAALNKPDLVKAAFSET 451

Query: 448 DPLS--KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
             L       + L     + V++KE   A    L EV  ++ +  K  +  E   +KA +
Sbjct: 452 VMLKGLNSEVIELEPNHVVVVRVKEHHDAGTLALAEVKANITERLKQDQANEAARAKAQE 511

Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINR--MDNENKFFGYDGISQVFSGPV----EM 559
           L+ +  K G    D+G      L+   ++ R   D +    G     + F  P      +
Sbjct: 512 LMAQV-KAGAT--DLG------LVAKAKLGRGAQDVDAAIVG-----KAFQMPTPSTSPV 557

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN--------KDLLDSVIAYLK 611
           V    + NG + V     N+  G     D+ ++ L Q +N        + L+DS+ A  K
Sbjct: 558 VDTVGLANGYAVVALDKVNAAEGV---SDELVNALKQRLNAQYSEADYRGLIDSLKANAK 614

Query: 612 SQYSV 616
             Y V
Sbjct: 615 VLYPV 619


>gi|330011537|ref|ZP_08307123.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. MS 92-3]
 gi|328534154|gb|EGF60789.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. MS 92-3]
          Length = 639

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 134/645 (20%), Positives = 285/645 (44%), Gaps = 42/645 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G +    V  Q++    F N+ 
Sbjct: 16  MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 74

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             E   + Q++G        N    ++  + +++L+ L+  + LDQ+  ++GL     +V
Sbjct: 75  ASERNRMQQQLGDQFSELAANENYMKT--MRQQVLNRLIDESLLDQYARELGLSISDEQV 132

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MR 173
              I ++  F   + KF +  F   +A+ G+   +Y       L+   ++    G   M 
Sbjct: 133 KQAIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFML 191

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           P     DQ      + R V    +N   + A    S+  +  ++++ +  + APE  R+S
Sbjct: 192 PGES--DQLAALVSQQRVVREATINVNALAAKQTASDEEINVFWQQNQARFMAPEQFRVS 249

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D    ++    S+DE+Q+ Y+++K+++  P+      +    + +A      L+KG
Sbjct: 250 YIKMDAASMQESA--SDDEIQSWYDQHKDQFTQPQRSRYSVIQTKTEADAKAVLAELQKG 307

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIA 351
             F  LA+E+   +     G     ++ D S    +    L +KG  + VI  S G+++A
Sbjct: 308 ADFATLAKEKSTDIISARNGG-DMGWMEDASTVPELKDAGLKEKGQLSGVIKSSVGFLVA 366

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRREK 409
            + +++P+      +V+ DIA +++     EK  + Y  L++ ++   S D   ++   +
Sbjct: 367 RLDDVQPAQVKPLADVRNDIAAKVK----QEKALDAYYALQQKVSDAASNDNESLASAAQ 422

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-Q 467
           +  + +    + G+D   +E+   P  + +    + G++     +  +   DG   +V +
Sbjct: 423 VAGLKVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLR 482

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           I E      + L EV   V    K  K  ++   +A++L L   K+GK    + K  G S
Sbjct: 483 ISEHKAEAVKPLAEVKAQVSDIVKHNKAEQQAKLEADKL-LAALKDGKGDEAM-KAAGLS 540

Query: 528 LLTTNQINRMDNENKFFGYDGISQV-FSGPV--EMVKCFPIENGLS--YVVFKVTNSKVG 582
                 ++R        G D +SQ+ F+ P+  +    + + + +    V+  +   K G
Sbjct: 541 FGAPQTLSRT-------GQDPLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAG 593

Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             P ++K   +  +TQ   +   +++++ L+    + + D++ Q+
Sbjct: 594 SMPEEQKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 638


>gi|307293346|ref|ZP_07573192.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium chlorophenolicum
           L-1]
 gi|306881412|gb|EFN12628.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium chlorophenolicum
           L-1]
          Length = 649

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 112/480 (23%), Positives = 204/480 (42%), Gaps = 32/480 (6%)

Query: 1   MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALF--SVSGSSTVVSVGRQKVPFS 54
           ML + R+  R+    + A IFL ++   F++  ++   F  S+    TV   G  K+  +
Sbjct: 1   MLSVFRRFIRSKFGAFTALIFLAIIAAAFIMGDITSGKFGSSIGSGETVAKAGGSKLTMA 60

Query: 55  SFI--------NSWKQELGMISQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
            F         N+ +   G+   +IG F+         G   ++ D LV+  TL ++  D
Sbjct: 61  EFQDRVQRVFENARRSNPGL---QIGDFLAQ-------GGGAQVYDQLVASMTLKEYAGD 110

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
             +      V  +IA+ P F      FS + F   L RE I E+   D   + +    ++
Sbjct: 111 QKVHISKRLVDAQIAQIPAFQDAAGNFSQENFRQLLLRERITEQALRDDIGREILERQML 170

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
                G++ S+ ++        E R     V+       IA+P++A L  +++K    Y 
Sbjct: 171 APLGLGVKLSDSMVLPYASLLLEARQGTIAVIPASAFKDIAEPTDAQLGDFYKKNAARYT 230

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
            PE +RI Y + DV    +  + ++ E+   Y +NK  Y + E R  EQL+ P +  A  
Sbjct: 231 IPEQRRIRYAVIDVERFAQAAQPTDAEIATYYNQNKAAYAARESRDFEQLILPTEAGAKA 290

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
               +K GK     A++ G ++S++   S         +   +    AK+G+    + GS
Sbjct: 291 IADQVKGGKSLAAAAQDAGLAVSELKDQSRQGLAATASAAIANAGFAAKQGELVGPLRGS 350

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
            G+ +  V+ +K +   +   VK +I   +R  K    + +   ++E+ +A G S +E+ 
Sbjct: 351 LGWALLRVTAVKSTPARTLDAVKGEIVATLRTQKEKRLLNDFTGKIEDQVANGGSFEEVV 410

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG--KDD-----PLSKDHTVAL 458
           +   +     P +  +GK V+          + LL  VF   +DD     P++ D   AL
Sbjct: 411 KDNGLKLETTPFLISSGKQVEDAAYQLPADVQPLLAPVFAMSQDDDAQLIPIAADKRYAL 470


>gi|84387739|ref|ZP_00990755.1| peptidyl-prolyl cis-trans isomerse D [Vibrio splendidus 12B01]
 gi|84377422|gb|EAP94289.1| peptidyl-prolyl cis-trans isomerse D [Vibrio splendidus 12B01]
          Length = 621

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/469 (20%), Positives = 202/469 (43%), Gaps = 15/469 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+  +  +  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVG-SYITGGGNNAAAKVGNTEIARGEFEQAY 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G     + ++ A      K +LD +++   L+Q  E +GL     ++  
Sbjct: 60  QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F     +F  +V+ S L R G + + + ++  + L R  +V    G       
Sbjct: 120 MILEMPQFQTA-GQFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   +   + R +  + L+   +    + ++  + Q++ +    Y  PE  ++SYI  
Sbjct: 179 EIDTQSKLIAQTRDIRTVTLSVADLAKGIELTDEQIEQYYSENPQAYTRPEQAKVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLKKGKK 295
                + ++E+S++E Q  Y+++ +KY + E R V  ++     E  A      L  G  
Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGAD 298

Query: 296 FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F  LAEE+        +G    + +  + D +  D+ F+L   GD T ++   FGY I  
Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERDVMDPAFEDAAFALENIGDTTGLVKSDFGYHIIK 358

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIV 411
           +  +K S    + EV  +I  ++    A ++  E    LE+       S+D+ +   + +
Sbjct: 359 LDEVKASQAQPYTEVAAEIKQELLDQHAVDQFYEQQTELEKVAFEFPDSLDDSA---EAI 415

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
           +  +   DF  + V   EV   P   Q +     K+D L+ +     P+
Sbjct: 416 NAKITTTDFISQ-VDAPEVLMTPAVMQAILSPEVKEDGLNSEVIEVAPE 463


>gi|218710170|ref|YP_002417791.1| peptidyl-prolyl cis-trans isomerase D [Vibrio splendidus LGP32]
 gi|218323189|emb|CAV19366.1| Peptidyl-prolyl cis-trans isomerase D [Vibrio splendidus LGP32]
          Length = 621

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/400 (21%), Positives = 176/400 (44%), Gaps = 10/400 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+  +  +  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVG-SYITGGGNNAAAKVGNTEIARGEFEQAY 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G     + ++ A      K +LD +++   L+Q  E +GL     ++  
Sbjct: 60  QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F     +F  +V+ S L R G + + + ++  + L R  +V    G       
Sbjct: 120 MILEMPQFQTA-GQFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   +   + R +  + L+   +    + ++  + Q++++    Y  PE  ++SYI  
Sbjct: 179 EIDIQSKLIAQTRDIRTVTLSVADLAKTIELTDEQIEQYYQENPAAYTRPEQAKVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLKKGKK 295
                + ++E+S++E Q  Y+++ +KY + E R V  ++     E  A      L  G  
Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGAD 298

Query: 296 FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F  LAEE+        +G    + +  + D +  ++ F+L   GD T ++   FGY I  
Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERDVMDPAFEEAAFALENIGDTTGLVKSDFGYHIIK 358

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +  +K S    + EV  DI  ++    A ++  E    LE
Sbjct: 359 LDEVKASQAQPYTEVATDIKQELLDQHAVDQFYEQQTELE 398


>gi|313646932|gb|EFS11389.1| PPIC-type PPIASE domain protein [Shigella flexneri 2a str. 2457T]
 gi|332763740|gb|EGJ93978.1| PPIC-type PPIASE domain protein [Shigella flexneri K-671]
          Length = 622

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 139/651 (21%), Positives = 284/651 (43%), Gaps = 56/651 (8%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++ 
Sbjct: 1   MDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFN 59

Query: 62  QELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  SERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+      D Y + L         + G+  ++ 
Sbjct: 119 AIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTDF 173

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           +L    D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+S
Sbjct: 174 MLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVS 233

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI       ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L KG
Sbjct: 234 YIKLVAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKG 291

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIA 351
             F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I 
Sbjct: 292 GDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIV 350

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRREK 409
            + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E+
Sbjct: 351 RLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAEQ 406

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-Q 467
              +      +  KD   +E+   P  + +    + G++     +  +   DG   +V +
Sbjct: 407 AAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVLR 466

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G  
Sbjct: 467 VSEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLK 524

Query: 528 LLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFKV 576
                 ++R        G D ISQ  F+ P       P ++  SY          V+  +
Sbjct: 525 FGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLAL 571

Query: 577 TNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 DEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 622


>gi|217973906|ref|YP_002358657.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS223]
 gi|217499041|gb|ACK47234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS223]
          Length = 621

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 151/665 (22%), Positives = 276/665 (41%), Gaps = 95/665 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57
           MLE IR  S+  +AK  LV++ + F   G+S  L    GS+T V    V    +  +   
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYL----GSTTDVPAAEVNGDIITKAELE 56

Query: 58  NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +++ E   + Q++G     ++++      + + +L+ LV+   +DQ  + +GL     +
Sbjct: 57  QAYQSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   +   P F   D KF +D + + L + G   + + D     ++R  +    VG    
Sbjct: 117 IIAAVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVG---T 172

Query: 175 SNLLLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
             +L  +AK+      + R V Y+V+++    A A  ++  +  +++  +  + +PE   
Sbjct: 173 EFVLAGEAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVS 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPN----------- 279
           + Y+  +  +  K   +S++E QA YE++K +Y S E R     LV P            
Sbjct: 233 LEYVELNAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAE 292

Query: 280 ----QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
               Q ++   F  L K      L+ EQG  L     G      + D +   ++F+L  K
Sbjct: 293 DLAKQLDSGADFADLAKANSDDTLSAEQGGKLDWFEPG------VMDPAFDAALFAL-NK 345

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G  + V+   FG+ I  + +++P  TV F +VK  I  Q+          +D K +++F 
Sbjct: 346 GQHSAVVKTDFGFHIIKLLDVQPGVTVPFADVKAKIVAQL----------QDKKAVDQFY 395

Query: 396 ALGTSM--------DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
           +L + +        D +S   K V +D+       +D     V A   K  L+   F + 
Sbjct: 396 SLQSKLADTSYEVPDTLSETAKAVGVDIKTTPLFSRD----NVPAALNKPDLVKAAFSET 451

Query: 448 DPLS--KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
             L       + L     + V++KE   A    L EV  ++ +  K  +  E   +KA +
Sbjct: 452 VMLKGLNSEVIELEPNHVVVVRVKEHHDAGTLALAEVKANITERLKQDQANEAARAKAQE 511

Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINR--MDNENKFFGYDGISQVFSGPV----EM 559
           L+ +  K G    D+G      L+   ++ R   D +    G     + F  P      +
Sbjct: 512 LMAQV-KAGAT--DLG------LVAKAKLGRGAQDVDAAIVG-----KAFQMPTPSTSPV 557

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN--------KDLLDSVIAYLK 611
           V    + NG + V     N+  G     D+ ++ L Q +N        + L+DS+ A  K
Sbjct: 558 VDTVGLANGYAVVALDKINAAEGV---SDELVNALKQRLNAQYSEADYRGLIDSLKANAK 614

Query: 612 SQYSV 616
             Y V
Sbjct: 615 VLYPV 619


>gi|153000126|ref|YP_001365807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS185]
 gi|160874748|ref|YP_001554064.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS195]
 gi|151364744|gb|ABS07744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS185]
 gi|160860270|gb|ABX48804.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS195]
 gi|315266990|gb|ADT93843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS678]
          Length = 621

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 151/665 (22%), Positives = 276/665 (41%), Gaps = 95/665 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57
           MLE IR  S+  +AK  LV++ + F   G+S  L    GS+T V    V    +  +   
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYL----GSTTDVPAAEVNGDIITKAELE 56

Query: 58  NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +++ E   + Q++G     ++++      + + +L+ LV+   +DQ  + +GL     +
Sbjct: 57  QAYQSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   +   P F   D KF +D + + L + G   + + D     ++R  +    VG    
Sbjct: 117 IIAAVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVG---T 172

Query: 175 SNLLLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
             +L  +AK+      + R V Y+V+++    A A  ++  +  +++  +  + +PE   
Sbjct: 173 EFVLAGEAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVS 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPN----------- 279
           + Y+  +  +  K   +S++E QA YE++K +Y S E R     LV P            
Sbjct: 233 LEYVELNAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAE 292

Query: 280 ----QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
               Q ++   F  L K      L+ EQG  L     G      + D +   ++F+L  K
Sbjct: 293 DLAKQLDSGADFADLAKANSDDTLSAEQGGKLDWFEPG------VMDPAFDAALFAL-NK 345

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G  + V+   FG+ I  + +++P  TV F +VK  I  Q+          +D K +++F 
Sbjct: 346 GQHSAVVKTDFGFHIIKLLDVQPGVTVPFADVKAKIVAQL----------QDKKAVDQFY 395

Query: 396 ALGTSM--------DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
           +L + +        D +S   K V +D+       +D     V A   K  L+   F + 
Sbjct: 396 SLQSKLADTSYEVPDTLSETAKAVGVDIKTTPLFSRD----NVPAALNKPDLVKAAFSET 451

Query: 448 DPLS--KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
             L       + L     + V++KE   A    L EV  ++ +  K  +  E   +KA +
Sbjct: 452 VMLKGLNSEVIELEPNHVVVVRVKEHHDAGTLALAEVKANIAERLKQDQANEAARAKAQE 511

Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINR--MDNENKFFGYDGISQVFSGPV----EM 559
           L+ +  K G    D+G      L+   ++ R   D +    G     + F  P      +
Sbjct: 512 LMAQV-KAGA--MDLG------LVAKAKLGRGAQDVDAAIVG-----KAFQMPTPSTSPV 557

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN--------KDLLDSVIAYLK 611
           V    + NG + V     N+  G     D+ ++ L Q +N        + L+DS+ A  K
Sbjct: 558 VDTVGLANGYAVVALDKVNAAEGV---SDELVNALKQRLNAQYSEADYRGLIDSLKANAK 614

Query: 612 SQYSV 616
             Y V
Sbjct: 615 VLYPV 619


>gi|310766848|gb|ADP11798.1| putative protease maturation protein [Erwinia sp. Ejp617]
          Length = 623

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 119/536 (22%), Positives = 239/536 (44%), Gaps = 43/536 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R AS   V K+ L ++ + F++ G+   L   SG      V  Q++  +    ++
Sbjct: 1   MMDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSGD-YAAKVNGQEIGRAQLERAF 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E     Q +G    V+         + ++ L  L+    L Q+ ++IGL     ++  
Sbjct: 60  SSERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +  ++S +   G    +Y +   K L+   ++G   G    ++ 
Sbjct: 120 AIFTQPAFQ-TDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTG----TDF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           +L    D       + R V  + +N   + A  + +   +  ++++++ +  +PE  R+S
Sbjct: 175 VLGNETDSLAALVAQQRLVREVTINVNAMAAKQNVTQEEIANYYQQHQSSLMSPEQFRVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D    ++ +  S  ++Q+ Y+++++ Y  P+      +    + EA     +LKKG
Sbjct: 235 YIKMDASAMQQPV--SESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALKKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F +LA+E  KS   IS      +G    E  PD  L ++  +L +KG  + VI  S G
Sbjct: 293 GSFAKLAKE--KSADPISARNGGDMGWLEPETTPD-ELKNA--ALKEKGQLSDVITSSVG 347

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EIS 405
           +++A + + +P    +  EV  +IA +++     EK    + +L++ ++   S D   ++
Sbjct: 348 FIVARLDDTQPEKVKALSEVHDEIARKLK----QEKAVVAFYKLQQKVSDAASNDNESLA 403

Query: 406 RREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
             E++  +     D+  +D     +K K V    +   LL    G++     +  V   D
Sbjct: 404 SAEQVAGVKAVDTDWFDRDNLPAELKFKAVQDAIFNGALL----GENGAPGSNSEVITVD 459

Query: 461 GSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           G   +V +I+E  P   + L++V   +    K  K  ++  ++A++L+ E  K GK
Sbjct: 460 GDRAFVLRIREHKPEAVKALKDVTAQITDTLKQQKGLQQAKAQADKLLAEL-KAGK 514


>gi|152968976|ref|YP_001334085.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238893390|ref|YP_002918124.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150953825|gb|ABR75855.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238545706|dbj|BAH62057.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 624

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 133/645 (20%), Positives = 285/645 (44%), Gaps = 42/645 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G +    V  Q++    F N+ 
Sbjct: 1   MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             E   + Q++G        N    ++  + +++L+ L+  + LDQ+  ++GL     +V
Sbjct: 60  ASERNRMQQQLGDQFSELAANENYMKT--MRQQVLNRLIDESLLDQYARELGLSISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MR 173
              I ++  F   + KF +  F   +A+ G+   +Y       L+   ++    G   M 
Sbjct: 118 KQAIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFML 176

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           P     DQ      + R V    +N   + A    S+  +  ++++ +  + APE  R+S
Sbjct: 177 PGES--DQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D    ++    S++E+Q+ Y+++K+++  P+      +    + +A      L+KG
Sbjct: 235 YIKMDAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKG 292

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIA 351
             F  LA+E+   +     G     ++ D S    +    L +KG  + VI  S G+++A
Sbjct: 293 ADFATLAKEKSTDIISARNGG-DMGWMEDASTVPELKDAGLKEKGQLSGVIKSSVGFLVA 351

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRREK 409
            + +++P+      +V+ DIA +++     EK  + Y  L++ ++   S D   ++   +
Sbjct: 352 RLDDVQPAQVKPLADVRNDIAAKVK----QEKALDAYYALQQKVSDAASNDNESLASAAQ 407

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-Q 467
           +  + +    + G+D   +E+   P  + +    + G++     +  +   DG   +V +
Sbjct: 408 VAGLKVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLR 467

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           I E      + L EV   V    K  K  ++   +A++L L   K+GK    + K  G S
Sbjct: 468 ISEHKAEAVKPLAEVKAQVSDIVKHNKAEQQAKLEADKL-LAALKDGKGDEAM-KAAGLS 525

Query: 528 LLTTNQINRMDNENKFFGYDGISQV-FSGPV--EMVKCFPIENGLS--YVVFKVTNSKVG 582
                 ++R        G D +SQ+ F+ P+  +    + + + +    V+  +   K G
Sbjct: 526 FGAPQTLSRT-------GQDPLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAG 578

Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             P ++K   +  +TQ   +   +++++ L+    + + D++ Q+
Sbjct: 579 SMPEEQKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623


>gi|227358098|ref|ZP_03842440.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis ATCC
           29906]
 gi|227161833|gb|EEI46865.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis ATCC
           29906]
          Length = 625

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 130/539 (24%), Positives = 249/539 (46%), Gaps = 47/539 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ IR  +     KI L V+ + F++ G+   LFS SG +    V   K+  +    ++
Sbjct: 1   MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFS-SGVNDAAEVNGYKISRAQLEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVG---LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +Q    + + +G    S  +   G   + ++ L+ L++ A LDQF +++G+ A   ++  
Sbjct: 60  QQRRAQLQKDMGDNFASLASSDEGQKMIRQQALNVLINQALLDQFAQELGISAGDQQIRD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +  +V  L    I+     D + + + +  +       ++ ++ 
Sbjct: 120 AIFALPYFQ-TDGKFDNKKYVELLTANNIDA----DAFAEGIRQNLINQQLRYSIQGTDF 174

Query: 178 LLD-QAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            L+ + K F     ++R+V    L+ +        S+  L  ++++    + AP   ++S
Sbjct: 175 ALESEVKDFAGLMLQSRNVRLASLDIQPFLEKETVSDEELKAFYDQNTSMFIAPAQVKVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  +  +    I IS+DE++A Y+ N  ++  P  +    LV  ++  A EA  +LK G
Sbjct: 235 YIQLEAQKDLSNITISDDEVKAYYDSNISEFTVPGQKKYSLLVLADETAAKEAEDALKNG 294

Query: 294 KKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             F+ L +E         Q  SL  I++G    + +P+++ A    SL +KG  +  +  
Sbjct: 295 ADFVTLVKEKSIDTFSAKQNGSLGWITIG----QELPELANA----SLTEKGQISQPVKI 346

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE- 403
           S GY I  + ++KPS    F ++K D+  +MR  KA     +D+  L++ ++   S D  
Sbjct: 347 SNGYAIFRLDDMKPSVVKPFDDIKADLLVKMRENKAI----DDFFALQQKVSQAASNDND 402

Query: 404 -ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK---DD--PLSKDH-TV 456
            ++   K  ++ +   D+  ++     V A    E+L   +FG    DD  P   +   V
Sbjct: 403 TLATAAKAGNVTVINTDWFDEN----NVPAALNNEKLTQLIFGGSLVDDNGPTGMNSDMV 458

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
            L + S   V+++   PA  + L++V   V    K  K ++ ++++A +L L   KEGK
Sbjct: 459 TLGNDSAYIVRVEGYKPASTQPLDKVRDKVITLVKQQKASQAMNAQAQKL-LAALKEGK 516


>gi|309787033|ref|ZP_07681645.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 1617]
 gi|308924611|gb|EFP70106.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 1617]
          Length = 611

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 139/638 (21%), Positives = 277/638 (43%), Gaps = 56/638 (8%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           KI   ++ V F++ G+S  L    G++    V  Q++    F N++  E   + Q++G  
Sbjct: 3   KIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLGDQ 61

Query: 75  VNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
             SE A + G    L +++L+ L+  A LDQ+  ++ L     +V   I  +P F   D 
Sbjct: 62  Y-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQ-VDG 119

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFY 186
           KF +  +   L + G+      D Y + L         + G+  ++ +L    D+     
Sbjct: 120 KFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALV 175

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  D    ++ +
Sbjct: 176 AQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPV 235

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
             S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F  LA+E+   
Sbjct: 236 --SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSAD 293

Query: 307 LSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +     G     ++ D ++ D +    L +KG  + VI  S G++I  + +I+P+   S 
Sbjct: 294 IISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSL 352

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRREKIVSIDLPLVDFAG 422
            EV+ DIA ++R     EK  + Y  L++ ++   S D   ++  E+   +      +  
Sbjct: 353 DEVRDDIAAKVR----HEKALDAYYALQQKVSDAASNDTESLAGAEQAAGVKATQTGWFS 408

Query: 423 KDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLE 480
           KD   +E+   P  + +    + G++     +  +   DG   +V +I E  P   + L 
Sbjct: 409 KDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLA 468

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           +V   VK   +  K  ++    A +L+++  K GK    + +  G        ++R    
Sbjct: 469 DVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRS--- 523

Query: 541 NKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFKVTNSKVG--PVQEK 587
               G D ISQ  F+ P       P ++  SY          V+  +   K G  P  +K
Sbjct: 524 ----GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 573

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 574 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 611


>gi|126726381|ref|ZP_01742222.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales
           bacterium HTCC2150]
 gi|126704244|gb|EBA03336.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales
           bacterium HTCC2150]
          Length = 653

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/472 (21%), Positives = 222/472 (47%), Gaps = 13/472 (2%)

Query: 36  SVSGSS-TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           S  GS+ +V SVG ++V  + +  +   EL  +SQ+ G  +  E+AR+ G+   +L  L+
Sbjct: 65  SFGGSTQSVASVGDREVGVNEYARAVNNELSRLSQQFGQQITLEQARAFGVVDNVLQQLL 124

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
           S A +D  +  +G       V  +I   P F     +F    +  RL   G++ KE+ ++
Sbjct: 125 SQAAVDNEVVRLGFSIGDEEVRKQILEIPAFQSLGGQFDKVNYEERLRSSGLSTKEFENN 184

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
                +RT + G   GG+  ++   D    F  + R+ ++ +L+   +      ++A L 
Sbjct: 185 LRIQTARTFLQGAVGGGVIGNSAYGDAVIDFLTQERNFEWALLDASALSEEVTATDADLQ 244

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
            ++++    +  PE ++I+Y +         IE+   E+QA Y++   ++  PE R  E+
Sbjct: 245 AYYDENPATFTLPESRQITYAVLLPETVAATIEVPASEIQAVYDERAAEFQKPERRLTER 304

Query: 275 LVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
           L F ++  A+ A   L  G+ +F  L  E+  +L D+ +G  +++ + + + A+++F+  
Sbjct: 305 LAFADEAAANAAKARLDSGEVRFADLLAERDLTLEDVDMGEVTRDDLYEET-ANALFADG 363

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             G   P +  S G  I  V+    +     ++V++DI +++  ++A  ++ +    +++
Sbjct: 364 FLGIAGP-LPSSVGPAIFRVNGALAAIDTPLEDVQEDIRSELAQSRARREILDYITEVDD 422

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
            LA G +++E++   ++    L   D   +    +++AA  Y E     +  +D    + 
Sbjct: 423 LLAGGATLEEVAAETQMT---LETTDITTE--SAEDMAA--YNEFRAAALSAQDGDFPE- 474

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
               L DG    +++    P   + +E V   + + W   +T   +++ A++
Sbjct: 475 -ITELSDGGIFALRLDGITPPTLQDIEAVTDQLNEAWTYAETQIRLNTLADE 525


>gi|269138352|ref|YP_003295052.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella
           tarda EIB202]
 gi|267984012|gb|ACY83841.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella
           tarda EIB202]
 gi|304558384|gb|ADM41048.1| Peptidyl-prolyl cis-trans isomerase PpiD [Edwardsiella tarda
           FL6-60]
          Length = 626

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 174/393 (44%), Gaps = 24/393 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V K+ L ++ + F++ G+ + L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSGD-YAAKVDGQEIGRAQLEQAV 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G    V+         L K++L  ++    LDQ+ + + L     +V  
Sbjct: 60  QNERSRLQQQLGDQFSVLAGNEGYMKELRKQVLSRMIDDVLLDQYAQKLNLAISDAQVKE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   DN F +  ++  +AR G++     D Y +++ +  V    + G   +  
Sbjct: 120 AIRAMPYFQ-TDNHFDNAKYLDMVARLGLSP----DAYAQLMRQQLVTQQLIQGFTATGF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            L    D       + R V    ++   +      S+A L  ++++++ ++ APE  ++ 
Sbjct: 175 TLPAEVDALAALTMQQRQVSLATIDISKLMPQQQVSDAELQGYYQQHQSSFIAPEAVKVR 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D      K+ +S+ E+ A Y+++K  +  P       +    + EA      L  G
Sbjct: 235 YIEMDAAAINDKMTVSDAEISAYYDQHKGSFTQPARSDYSVIQVKTEAEAKAIAAQLANG 294

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  LA+E  KS   IS      LG    E  PD   A     L+ KGD +  I  S G
Sbjct: 295 ADFATLAKE--KSTDIISRKNGGELGWLEPETTPDEIRA---AKLSHKGDVSAPIASSVG 349

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           Y+I  +++++P+      EV+ +IA++++  KA
Sbjct: 350 YLIVRLNDMQPAVVKPLSEVRAEIADKVKQQKA 382


>gi|78356452|ref|YP_387901.1| peptidyl-prolyl cis-trans isomerse domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218857|gb|ABB38206.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 629

 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 183/406 (45%), Gaps = 34/406 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR+ +++W  KI   ++ + F+ WG+         S+ V  VG+  +  ++F   +
Sbjct: 1   MLDSIRQNAQSWGVKIAFGLIIIVFVFWGVGS--MDNQPSNVVAKVGKTSITVNAFAREY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++ ++  +   V  SE  +  GL  ++L+ ++S   L Q  E  GLE     +   IA
Sbjct: 59  EQQVELVRAQFPDV-TSEDLKQAGLKMRVLNQMISEVLLVQQAEKQGLEVSPAELKLRIA 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK-MLSRT--DVVGMFVGGMRPSNL 177
             P+F+  D  F  + +   LA +G     Y D   + ML++   D + M      P+ +
Sbjct: 118 EIPVFNDADGNFDGERYKQVLAAQGTTPGAYEDKIRRSMLAQKMRDFITM------PAAV 171

Query: 178 LLDQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
             ++AK  +    E RS+DY++    +      P    ++ ++++  +NY+ P    + Y
Sbjct: 172 TAEEAKAMFLYSAERRSMDYVLFAAENYLDQVKPGEEQISAFYKQNIENYKVPPRVTLQY 231

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE------------IRTVEQLVFPNQKE 282
           ++           +S+D + A YE NKE +   E                E+ V   +K+
Sbjct: 232 VMITPAALADGASVSDDRIAAYYEDNKESFRQEERVHARHILVLADAGASEEKVAAAEKK 291

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDI---SLGSFSK-EYIPDVSLADSIFSLAKKGDF 338
            +E ++ ++KG  F ++A+E  +  S      LG F + + +P+    +     A  G  
Sbjct: 292 INELYERIRKGADFAKVAKEASEGPSAPLGGDLGWFGRGQMVPEF---EQAAFAAAAGQV 348

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
           T  +   FG+ I  V   + +   +  EV  +I++++    A EKV
Sbjct: 349 TAPVRTQFGFHIIKVEEKENARIRTLDEVHDEISHRLAEEAALEKV 394


>gi|253990887|ref|YP_003042243.1| peptidyl-prolyl cis-trans isomerase [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782337|emb|CAQ85501.1| Peptidyl-prolyl isomerase [Photorhabdus asymbiotica]
          Length = 623

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 189/388 (48%), Gaps = 14/388 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI L ++ + F++ G+   L S    S    V  Q +  +    ++
Sbjct: 1   MMDNLRTAANSPVLKIVLALIILSFVLTGVGGYLTS-GTDSYAAEVNGQTISRAQLEQAF 59

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +QE  M+ +++G  F V +   +S+  +  ++L+ L++ A +DQ+ +++GL A   +V  
Sbjct: 60  QQERNMLQEQLGDKFSVLASNEQSMKQIRSQVLERLINNALIDQYSQELGLSASDEQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175
            I R+  +   + KF ++ ++  L R  ++     +   + L    ++  F G   + PS
Sbjct: 120 AI-RNISYFQINGKFDNNKYLDFLNRSNLSPDILAEQTRQNLINQQLIMAFSGSEIVLPS 178

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            + L+     + + R+V    L  + V    + ++  L  ++   K+++ APE  +ISYI
Sbjct: 179 EVKLN--AELFLQQRAVRLATLELKKVHVRQEVTDKDLQDYYNVNKNSFIAPEEVKISYI 236

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
             D  ++  K+ +++ ++ + YE N ++Y  PE +    +    + EA      L KG  
Sbjct: 237 RMDAADEMDKVSVTSVDVDSYYEHNLKRYTQPEQKKYSLVQLATEVEAKIVLDELNKGAD 296

Query: 296 FIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAH 352
           F +LA E+     S  + G     ++ + SL + +   +L +KG  + VI    G+ I H
Sbjct: 297 FGKLAAEKSTDKFSAKNKGEIG--WMEEDSLPEEMKKANLKEKGQISSVIKVPNGFAIFH 354

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKA 380
           + ++KP  T    EV+ +I   ++  KA
Sbjct: 355 LDDVKPQITKPLSEVRSEIEKTIKQEKA 382


>gi|242240288|ref|YP_002988469.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Dickeya dadantii
           Ech703]
 gi|242132345|gb|ACS86647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech703]
          Length = 626

 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 143/645 (22%), Positives = 278/645 (43%), Gaps = 50/645 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V K+ L ++   F++ G+ D L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRAAANNVVLKVILALIVGSFVLTGVGDYLIRGSGD-YAAKVNGQEISRAQLEQAV 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G     + +       L K+ L  L+    +DQF  ++GL     +V  
Sbjct: 60  QNERNRQQEMLGENFSALAANEGYMQQLRKQALSQLIDDTLIDQFARNLGLNISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +N+F ++ +++++ + G+      D Y ++L +  V    V G+  SN 
Sbjct: 120 AIFSVPAFQ-TNNRFDNEKYLAQVQQLGLTP----DVYAQLLRKQLVTQQLVRGLGGSNF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            L    D       ++R++    ++          S+  +  ++ +    Y APE  ++S
Sbjct: 175 QLPQEIDNLVAIAAQDRTIRTATIDLDARAKTQTASDDEIQNFYNQNSSRYLAPEQFKVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI+ D      KI + +  + + YE++K ++  PE R    +   N+ +A    + L KG
Sbjct: 235 YIMLDAAAIMDKISVDSAAVSSYYEQHKSEFTQPERRKYSIIQLKNEADAKAVLEQLHKG 294

Query: 294 KKFIQLAEEQGKSL-SDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
             F  LA+E+   + S  + G     ++   S  D I   +L +KG  + V+  S GY+I
Sbjct: 295 ADFAALAKEKSTDIVSRRNGGDLG--WMDGNSTVDEIKQANLQQKGQLSDVVKSSVGYLI 352

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
             + +I+     S  EV+ D+ ++++  KA ++     ++L E  A     + +   EK 
Sbjct: 353 VRLDDIQVQRVRSLDEVRGDLGDKVKREKALDEFYAQQQKLSE--AASNDNESLVSAEKA 410

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF-GKDDPLSKDHTVALPDGSYMWV-QI 468
             I     D+  +D     +     K+ +L     G++     +  V   DG   +V +I
Sbjct: 411 SGIKARQTDWFTRDNIPAALDFPQVKQAILNGTLTGENGAPGSNSDVINVDGDRAFVLRI 470

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
            E  P   + L++V   V +  K  K  ++    A +++ +  K+GKN       L A+ 
Sbjct: 471 SEHKPEATQPLDKVRDQVVQAIKRQKAEQQARVDAEKILADL-KQGKN-----DTLTAAG 524

Query: 529 LTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFKVT 577
           L+ +    M +  +    D +S+ VFS P       P ++ +SY          V+  + 
Sbjct: 525 LSFSAPRVMSSVGRG---DVMSEAVFSLP------HPQKDKVSYGIAQDQVGNIVIVALD 575

Query: 578 NSKVGPVQ--EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           N K   ++  +K +F + + Q     L DS+IA L  +  + + D
Sbjct: 576 NVKARELEAAQKKQFAAQIEQSALATLFDSLIANLHDEAKIKLGD 620


>gi|91228613|ref|ZP_01262531.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 12G01]
 gi|269965576|ref|ZP_06179690.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 40B]
 gi|91187845|gb|EAS74159.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 12G01]
 gi|269829801|gb|EEZ84036.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 40B]
          Length = 619

 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 122/532 (22%), Positives = 239/532 (44%), Gaps = 33/532 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           M++ +R+   +   KI L ++ + F+  G+    + V GS+ +   VG  ++P   F  +
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGS--YIVGGSNNSAAKVGNTEIPRGEFEMA 58

Query: 60  WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V 
Sbjct: 59  YQNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVR 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   + +F  +++ + L R G +     D + + + R  V    +  ++ S 
Sbjct: 119 SMILDMPQFQS-NGQFDQEIYQASLRRAGFSP----DSFAEYMRRELVREQLLNALQNSE 173

Query: 177 LLLD---QAK-RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    QA+ + + + R +  I ++        + ++  + ++++   DN+  PE  ++
Sbjct: 174 FILPGEVQAEGKLFTQTRDIRTIQIDLAEFAKNIELTDEEIQEYYKANPDNFTRPEQVKV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSL 290
           SYI       ++++ +S+ E++  Y+++  KY S E R V  ++     E  A      L
Sbjct: 234 SYIELSAEALKEQVNVSDAEVKKYYDEHLNKYSSEEQRRVAHILVEGDDEAKAQAILDEL 293

Query: 291 KKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F  LA+E+    G + +   LG   ++ + D +  ++ F+L   GD + ++   F
Sbjct: 294 NAGADFATLAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDTSGLVKSDF 352

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           GY I  +  +K S    F+EV  +I  +M   +A ++  E    LE  +A     D +  
Sbjct: 353 GYHIIKLEELKDSVAKPFEEVAAEIKQEMVDQQAIDQFYELQNELER-VAFEYP-DSLYD 410

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
             + V+ ++   DF  + V   EV   P   Q +     K+D L+ +     P+   + V
Sbjct: 411 ASQAVNQEVKTTDFISQ-VDAPEVLRSPAVMQAILSPEVKEDGLNSEAIEVAPE-HIIVV 468

Query: 467 QIKESIPARDRK---LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           ++++   ARD     LEEV   V  +   VK  +E      Q+V    KEGK
Sbjct: 469 RVED---ARDETVLPLEEVKDQVVAELSRVKGEQEAMELGTQVVAAL-KEGK 516


>gi|295689570|ref|YP_003593263.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
           ATCC 21756]
 gi|295431473|gb|ADG10645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
           ATCC 21756]
          Length = 653

 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 131/649 (20%), Positives = 273/649 (42%), Gaps = 38/649 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF---I 57
           ML   R  +++  A +   +L V F I+G+SD +F     S V+  G +++    F    
Sbjct: 1   MLAGFRSFAKSPFAVLLFGLLIVSFAIFGISD-VFKGPRGSGVIDAGSREMSAQDFKLRF 59

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++++E   I ++ G  +  ++A   G+DK+I+  L    ++   I  +G+      +  
Sbjct: 60  DNYRKE---IERRNGEPMTPDQAVERGVDKQIVQELALQESIAAAIAKMGVVPSDKLIAK 116

Query: 118 EIAR--SPLFHGK------DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
            +    S L  G+        KF   ++ + LA+  +  + Y       +++        
Sbjct: 117 TVHEQMSSLPPGQRPFDPITGKFDSKLYAALLAQNNLTPQAYEASLRDEIAQAHFFSAVA 176

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
            G++   +       +  E R V    +N   V   A P++A L  + ++  D    PE 
Sbjct: 177 DGLKAPRIYAALQAAYGLEARDVAAFAVNPASVEKPAPPTDAQLMAFMKENADRLTRPET 236

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           + +S +       E  + ++  E+Q  ++  K+    PE R++ Q+V P+ K A    Q 
Sbjct: 237 RVLSIMRVSAKALEPTVTLNPAEVQKAFDFRKDSLAKPETRSLIQIVAPDAKTAATISQR 296

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           L +G+    +A+  GK  S ++L    K  +PD  +AD+ FSLA  G  +  I+G  G  
Sbjct: 297 LARGEDPATVAKAYGK--SPVALIDKPKSALPDRKVADAAFSLA-VGQVSGPINGELGVS 353

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           +  V+ + P    +   V+ +I  ++R   A  K  +  +  ++    G  +   + +  
Sbjct: 354 VVKVTKVTPGVVATLDSVRPEIEAEVRAQTAQSKAYDQTQAYQDAHDAGADLVAAASKAG 413

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
            + +    +   G D  G+  A +    +++   FG       D  + L  G Y  V+++
Sbjct: 414 AMVVTTAPITAQGADQMGQPAAGL--TPEMIKTAFGLPQGGESD-LIELGKGEYYAVKVE 470

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           + +PA    L E+   +   W   +  + + +KA+ L     K+G++   +  +  +++ 
Sbjct: 471 KVVPAAMPPLAEIKPQLTAVWMGQEMGKRLKAKADALAARV-KKGESLEAVAASAQSNVQ 529

Query: 530 TTNQINRMDNENKFFGYDGISQVFSG------PVEMVKCFPIENGLSYVVFKVTNSKVGP 583
               ++R + +       G+   F G      P E+      + G +YVV K+      P
Sbjct: 530 RVPGLSRQNAQQHM----GLGPAFLGAAFDAKPNEVFTARAGQQGEAYVVAKLEAVHAAP 585

Query: 584 VQEKDKFISYLTQM-----MNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
             +  ++ + L Q      + +DL ++  A  K+Q     +  L ++ +
Sbjct: 586 TNDVARY-AVLAQAQAANGLMRDLGEASRAAAKAQLKTKTNLTLARQAI 633


>gi|317492905|ref|ZP_07951329.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919027|gb|EFV40362.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 627

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 170/389 (43%), Gaps = 16/389 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ V F++ G+   L   SG      V  Q++       + 
Sbjct: 1   MMDNLRAAANHVVLKIILGLIIVSFVLTGVGGYLTGGSGD-YAAKVDGQEISRGQLEQAV 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G    V+         L K+ L+ L+    LDQ+ + +GL     +V  
Sbjct: 60  QSERSRLQQQLGDQFSVLAGNEGYMKELRKQALNRLIDDMLLDQYAKKLGLGISDEQVKE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +N+F +  ++S +A  G+    Y     + L+   ++  +        +
Sbjct: 120 AIWAMPYFQ-TNNQFDNAKYLSIIANMGLTPDNYAQLVRQQLTSQQLIQAYTATGFTLPV 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++       + R V    ++ + +      ++  L  ++E+ K+++ APE  ++SYI  
Sbjct: 179 EVEAMAALTMQQRDVRLATIDIKALEKDQKVTDEELKAYYEQNKNSFIAPEEVKVSYIEM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + K+ +S+DE+ A Y+++K  Y  PE +    +    + +A      L  G  F 
Sbjct: 239 DAAAIQDKVTVSDDEIAAYYDQHKSSYTQPERKDYSVIQVKTEADAKAVLDELNSGADFA 298

Query: 298 QLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           ++A E  KS   IS      LG       PD  L      L  KG  +  +  S GY++ 
Sbjct: 299 KVAAE--KSTDIISRKKGGELGWLEPGTTPDEILG---AKLTTKGQLSGAVKSSVGYLVV 353

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKA 380
            +++IKP       EV+ DI  Q++  KA
Sbjct: 354 RLNDIKPEQVKPLAEVRADIEAQVKQQKA 382


>gi|296283875|ref|ZP_06861873.1| peptidyl-prolyl isomerase [Citromicrobium bathyomarinum JL354]
          Length = 646

 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 179/395 (45%), Gaps = 11/395 (2%)

Query: 17  FLVVLFVPFLIW--GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           FLV++ + F     G S +   +SG+++V  VG + V  +    S       + Q    +
Sbjct: 21  FLVLIAIAFAAGDVGNSGSFGGLSGTNSVAVVGDEDVTTAELRQSADNAFRQVQQDEPTL 80

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
             +E     GL  ++LD L+    + +F + +G+ A    +  EI     F G D  FS 
Sbjct: 81  SMAEFVEDGGL-MQVLDTLLDRVAVSEFGKMLGVRAGENLINSEIRMISAFRGPDGSFST 139

Query: 135 DVFVSRLAREGINEKEYIDHYTK-MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           + + + L ++G+ ++   D  +  ++++  +V    G   P +++   A +   +     
Sbjct: 140 EAYRAALQQQGLTDQIVRDDLSDGLIAQQVLVPAVFGAKFPDSIVARYATQLREKREGSI 199

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
            +V      P   DP++  L  ++   + ++  PE +++ Y LF   +    +E +  E+
Sbjct: 200 ALVPAELFAPK-DDPTDKQLQTFYNANRTDFMRPERRQVRYALFGADQLADSVEPTAAEI 258

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
           +  Y+ N + Y + E RT  QL+ P ++ A+   + +  G    Q+AEE G  L    +G
Sbjct: 259 KKRYDDNADLYRASEDRTFTQLIVPTRQAAESFRERVADGASLTQIAEEAG--LETQQIG 316

Query: 314 SFSKE---YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
              +E      + ++A+++FS A +G+  P+     GY +  + ++K     +  + + +
Sbjct: 317 PIKREDYAQQANAAVAEAVFS-ADRGEIAPIARSPLGYHVVRIDDVKTIPARTLAQARDE 375

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           IA+ +R  K    + E    ++  +  G S  +I+
Sbjct: 376 IADALRADKQRRALTELASDIDARVTSGESFADIA 410


>gi|332098560|gb|EGJ03526.1| PPIC-type PPIASE domain protein [Shigella boydii 3594-74]
          Length = 611

 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 138/638 (21%), Positives = 277/638 (43%), Gaps = 56/638 (8%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           KI   ++ V F++ G+S  L    G++    V  Q++    F N++  E   + Q++G  
Sbjct: 3   KIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLGDQ 61

Query: 75  VNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
             SE A + G    L +++L+ L+  A LDQ+  ++ L     +V   I  +P F   D 
Sbjct: 62  Y-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQ-VDG 119

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFY 186
           KF +  +   L + G+      D Y + L         + G+  ++ +L    D+     
Sbjct: 120 KFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALV 175

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  D    ++ +
Sbjct: 176 AQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPV 235

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
             S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F  LA+E+   
Sbjct: 236 --SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSAD 293

Query: 307 LSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +     G     ++ D ++ D +    L +KG  + VI  S G++I  + +I+P+   S 
Sbjct: 294 IISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSL 352

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRREKIVSIDLPLVDFAG 422
            EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E+   +      +  
Sbjct: 353 DEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAEQAAGVKATQTGWFS 408

Query: 423 KDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLE 480
           KD   +E+   P  + +    + G++     +  +   DG   +V +I E  P   + L 
Sbjct: 409 KDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLA 468

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           +V   VK   +  K  ++    A +L+++  K GK    + +  G        ++R    
Sbjct: 469 DVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRS--- 523

Query: 541 NKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFKVTNSKVG--PVQEK 587
               G D ISQ  F+ P       P ++  SY          V+  +   K G  P  +K
Sbjct: 524 ----GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 573

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 574 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 611


>gi|330829914|ref|YP_004392866.1| peptidylprolyl cis-trans isomerase D [Aeromonas veronii B565]
 gi|328805050|gb|AEB50249.1| Peptidylprolyl cis-trans isomerase D [Aeromonas veronii B565]
          Length = 637

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 127/598 (21%), Positives = 258/598 (43%), Gaps = 43/598 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ ++  VAK+ L ++ + F + G+   L +    +   +V   ++  ++  N++
Sbjct: 2   MLDKLREGAQGKVAKVILGLIILSFALAGVGSYL-NGPARTAPATVNGTEISAAALENAY 60

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           + E   +  ++G        N +  +     + +LD L+  A LD    ++GL     ++
Sbjct: 61  RNERARMESQMGEAFSQLAANPDYMKQ--FRRGVLDRLIDQALLDSKARELGLRISDEQI 118

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I   P F  ++ KF++D ++  + R G+  + + D   + + R  ++   +G     
Sbjct: 119 KQAIVAMPEF-AENGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMSALLGTEFSL 177

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
               +Q  + Y + R +  + L   +  A    S+  L Q+++     +   E  ++ Y+
Sbjct: 178 KGEAEQLDKLYNQTRDLRLVRLAAANYMADVQVSDNELEQYYKTNGARFMNDEQVKVDYL 237

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQ 288
           L D     K I+++  + Q  Y+++++ +   E R V  ++ P        +++A+    
Sbjct: 238 LLDAANLAKDIKVTEQDAQDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEQKAEAVLA 297

Query: 289 SLKKGKKFIQLAE-EQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
             K G  F  LA+ +   + S    G     ++ + D +   + F+L K GD + V+   
Sbjct: 298 KAKAGDDFAALAKADSSDTFSAKKGGELDWFEKGVMDPAFEKAAFALNKAGDLSTVVKSP 357

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-----EEFLALGTS 400
           FG+ I  +  ++ + T  F +VK++   +++  KA EK   + +++     E   +L  +
Sbjct: 358 FGFHIIKLLGVEAAQTKPFADVKEETITRLQADKAKEKFFAEQQKMADSSFENPDSLDLT 417

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
            D +    K+ S D      A   +   +V ++ + EQL      +DD  + D  + L D
Sbjct: 418 ADAMGM--KVQSSDFFTQATAPAPLNDPKVLSVAFSEQL------RDDNTNSD-VIELAD 468

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
           G  + + I    P   + L EV   V    K  K +E    KA Q +L+  K G++    
Sbjct: 469 GKALVLHITGHKPKAVKPLAEVKEQVIAAIKHDKASEVARGKA-QGLLDKLKVGESITAD 527

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
              LG  + T   + R D E      + I+Q F+ P       PI+   S  +   TN
Sbjct: 528 LTALGLKVETHKGVARFDRE---LDQNLIAQAFTLP------HPIDGKPSVALVAETN 576


>gi|325498268|gb|EGC96127.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia
           fergusonii ECD227]
          Length = 611

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 179/380 (47%), Gaps = 28/380 (7%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           KI   ++ V F++ G+S  L    G++    V  Q++    F N++  E   + Q++G  
Sbjct: 3   KIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAFNSERNRMQQQLGDQ 61

Query: 75  VNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
             SE A + G    L +++L+ L+  A LDQ+  D+ L     +V   I  +P F   D 
Sbjct: 62  Y-SELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQAIFATPAFQ-VDG 119

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFY 186
           KF +  + + L + G++     D Y + L         + G+  ++ +L    D+     
Sbjct: 120 KFDNSRYNAILNQMGMS----ADQYAQALRNQLTTQQLINGIAGTDFMLKGETDELAALV 175

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            + R V    ++          S+A +T +++++K+N+  PE  R+SYI+ D    ++  
Sbjct: 176 SQQRVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRVSYIMLDAANIQQP- 234

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            +S+ ++QA Y+++++++  P+      +    + EA     +L  G  F +LA+E  KS
Sbjct: 235 -VSDADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNGGDFAELAKE--KS 291

Query: 307 LSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
              IS      LG       P   L D+   L  KG  + VI  S G+++  + +++P+ 
Sbjct: 292 ADIISARNGGDLGWLEDSTTPQ-ELKDA--GLKDKGQLSGVIKSSVGFLVVRLDDVQPAK 348

Query: 361 TVSFQEVKKDIANQMRITKA 380
             +  EV+ DIA +++  KA
Sbjct: 349 VKTLAEVRDDIAAKVKHEKA 368


>gi|148260238|ref|YP_001234365.1| hypothetical protein Acry_1235 [Acidiphilium cryptum JF-5]
 gi|146401919|gb|ABQ30446.1| hypothetical protein Acry_1235 [Acidiphilium cryptum JF-5]
          Length = 628

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 129/638 (20%), Positives = 251/638 (39%), Gaps = 26/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML +IR+    W+ + F VVL   F+ WG+S  +  +  S  + +VG Q +   +   ++
Sbjct: 1   MLSMIRQLLDNWIVRAFFVVLIGVFVFWGVSSVVMGIGASDAIATVGGQPIKIEAVNAAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI-----GLEADHGRV 115
           ++ L   + +     NS R  S G ++++  +   G  +D+   ++     G+ A    +
Sbjct: 61  QRTLNAYATQ-----NSGREPSKG-ERRLFADQALGTAIDRAAMELEARRMGVVAPPAAI 114

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             ++   P FHG D KF    F + LA   +    ++      L  + ++     G+   
Sbjct: 115 RQQVFAIPAFHGPDGKFDKATFNAVLANHNLTPAAFMAEIASGLKTSQIIDAVTAGVSAP 174

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
             L+DQ   +  + R+V +  L          P+  VL +++  +   +  P  +    +
Sbjct: 175 APLVDQIFAYAAQERTVQFAQLPFAAANPPPAPAETVLRRYWRDHPGRFSTPALRDADVV 234

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           +       +   +S  E+ A+Y++ K K+     RTVE +   + K A     + K G  
Sbjct: 235 VLSPALIARGEAVSQAEIAAQYQQEKAKFAQTPTRTVEIITAEDAKSAAALANAWKGGAD 294

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +  + +    + +   + + +K      +        A  G+ +  + G+ G  +  V+ 
Sbjct: 295 WAAMQKAAAAATATAIVMTDAKPSDLPSATLAKAAFAATPGEVSAPVKGALGTYVFKVTK 354

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
                      V   I  ++++ KA   V      L++ LA  T++ ++     +    +
Sbjct: 355 AVAGGDKPLSAVADQIRAEIQLRKARNVVDNTLSHLQDALAGSTALGKLPASLHLAKARV 414

Query: 416 PLVDFAGKDVKGKEVAAIPYK---EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
             VD  G  V GK  A IP      Q + +      P +    V+ P  SY  + +   I
Sbjct: 415 S-VDREGMTVDGKP-AGIPGPAALRQAIVKAIFATAPGNTPQAVSGPGDSYYAIAVHRII 472

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
               +  ++V  DV  DW   +   +    A +L L   K GK         G ++ T+ 
Sbjct: 473 KPALKPYDKVKADVLADWTGAQVERQEEVAAAKL-LTAVKGGKTLAAAASAAGLTVTTSA 531

Query: 533 QINRMDNENKFFGYDGISQV-FS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-K 587
            + R            ++QV FS   G   MV+    E  +  VV  +   K G  +   
Sbjct: 532 PMTRAKPAKGV--PPQLAQVAFSLKKGAPTMVQTQ--EGFVVGVVSDIAEPKPGSDKAFH 587

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            +    L Q M +D+L +  A L+ +  V ++  L+ +
Sbjct: 588 QRVADSLGQSMQEDVLQTYAAALRQRDHVKINTKLLNQ 625


>gi|294141764|ref|YP_003557742.1| peptidyl-prolyl cis-trans isomerase D [Shewanella violacea DSS12]
 gi|293328233|dbj|BAJ02964.1| peptidyl-prolyl cis-trans isomerase D [Shewanella violacea DSS12]
          Length = 621

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 184/393 (46%), Gaps = 24/393 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  +AK  LV++ + F   G+S  L S S  +   +V  + +  S+   ++
Sbjct: 1   MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEAAAATVNGEDISESALEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A    L    K +L+ LV+   LDQ   ++GL     ++  
Sbjct: 60  QSERARLEQQMGDMFQALAANDTYLASVKKSVLERLVAEKLLDQSATELGLRVSDEQIKN 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D +F +D +++ L + G     + +     ++R  +V   VG    S  
Sbjct: 120 AIMIEPAFQ-TDGQFDNDRYLAILRQLGYQANTFRNMMRTDMTRRQLVASLVG----SEF 174

Query: 178 LLDQAKRFYF----ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           +L     +      + R + Y +++     A A  ++     +++     + +PE   + 
Sbjct: 175 VLPGETSYLAGIQGQTRDIRYHIVDASPFVADAKVTDEQAQSFYDANLSQFMSPETLSLE 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEA 286
           YI  +V +    + +++ E Q  Y++NK++Y  PE R    ++         ++ +A+  
Sbjct: 235 YIELNVADMANDVSVTDAEAQTYYDENKQQYLKPEKRLAAHILINLGDDESVSKAKAEAI 294

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           +  L+ G  F +LA+ + +      LG    + ++ + D +  + ++SL+ KG ++ V+ 
Sbjct: 295 YAKLQAGDDFSELAKTESEDTFSGELGGKLDWFEQGVMDPAFDEVLYSLS-KGSYSTVVK 353

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
            SFGY I  + +++P     F +VK +I  +++
Sbjct: 354 TSFGYHIIKLLDVQPGVEAPFADVKDNIIAELK 386


>gi|312882503|ref|ZP_07742244.1| peptidyl-prolyl cis-trans isomerase D [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369903|gb|EFP97414.1| peptidyl-prolyl cis-trans isomerase D [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 619

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 122/553 (22%), Positives = 236/553 (42%), Gaps = 35/553 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E +R+ +     K+ L V+ + F+  G+S  + S   SS+   VG  ++    F   +
Sbjct: 1   MMERMREGASGVAVKVILGVIILSFVFTGVSGYIGS-GASSSAAKVGNDEISRGDFEREY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + +   +  ++G +  N  +++       K +LD ++    +++  E +GL     +V  
Sbjct: 60  QNQRNQMQAQLGDYFSNLLADQNYVNTFRKSVLDRMIDDKLIERHAESLGLRVSDAQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           +I   P F   + KF  DV+ + L R G     + +   K + R  +     G       
Sbjct: 120 QIFEFPQFQ-VEGKFDEDVYQATLRRAGFTAHTFSEDLRKNILREQLRNAIEGTDFSLAG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R V  I L+          S+  +  +++++   Y  PE  +++YI  
Sbjct: 179 EVESQSKLISQTRDVKKITLSLSDFAKKVKLSDEEINDYYQQHTSQYTRPEQMKVAYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
              + +  I +S+++ +A Y+ N +KY S E R V  ++    N+++A +    L  G  
Sbjct: 239 SAEKLKNNIVVSDNDAKAYYQDNIDKYTSEEQRRVSHILIQGDNKEKAQKVLDKLNAGAD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E     G +    SLG   ++ + D     + F+L + G+ T ++   FGY I 
Sbjct: 299 FATLAKEDSEDVGSAEEGGSLGWIERD-VMDPEFEKAAFALKQPGETTGLVKSEFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM--------DE 403
            +  +K   T S++ V+K I  +++          D K  +EF AL   +        D 
Sbjct: 358 KLDELKAPETESYETVEKAIKQELK----------DQKAADEFYALQAQLETQAYESPDS 407

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
           +    + +  ++   DF   D    ++       Q L     K+D L+ +     P+   
Sbjct: 408 LDAAAEAIKANIQTTDFIS-DANAPDLLKSAPVLQALANPEVKEDGLNSEVIEIAPE-HV 465

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           + V+I ++ P +   L EV  DV +    VK A+E + K    ++E  K GK   D+ K 
Sbjct: 466 LVVRINDTRPEKLLPLSEVRDDVVEAATEVK-AKESAEKLAISIVEELKSGK--EDLLKK 522

Query: 524 LGASLLTTNQINR 536
            G        ++R
Sbjct: 523 YGLQFGEAESLDR 535


>gi|148977892|ref|ZP_01814445.1| peptidyl-prolyl cis-trans isomerse D [Vibrionales bacterium SWAT-3]
 gi|145962838|gb|EDK28110.1| peptidyl-prolyl cis-trans isomerse D [Vibrionales bacterium SWAT-3]
          Length = 621

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/507 (20%), Positives = 217/507 (42%), Gaps = 16/507 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+  +  +  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVG-SYITGGGNNAAAKVGNTEIGRGEFEQAY 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G     + ++ A      K +LD +++   L+Q  E +GL     ++  
Sbjct: 60  QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F     +F  +V+ + L R G + + + ++  + L R  +V    G       
Sbjct: 120 MILEMPQFQTA-GQFDQEVYQAALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   +   + R +  + L+   +    + ++  + Q++ +    Y  PE  ++SYI  
Sbjct: 179 EIDTQSKLIAQTRDIRTVTLSVADLAKDVELTDEQIEQYYTENPLAYTRPEQAKVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLKKGKK 295
                + ++E+S++E Q  Y+++ +KY + E R V  ++     E  A      L  G  
Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTAEQRKVSHILVEGDDEAKAQSILDELNAGTD 298

Query: 296 FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F  LAEE+        +G    + +  + D +  D+ F+L   GD T ++   FGY I  
Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERDVMDPAFEDAAFALQNVGDTTGLVKSDFGYHIIK 358

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIV 411
           +  +K   +  + EV  +I  ++    A ++  E    LE+       S+D+ +   + +
Sbjct: 359 LDELKAPESQPYAEVAAEIKQELLDQHAVDQFYEMQTELEKVAFEFPDSLDDSA---EAI 415

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
           +  +   DF  +     EV   P   Q +     K+D L+ +     P+   + V+++E+
Sbjct: 416 NAKITTTDFISQ-ADAPEVLMTPAVMQAILSPEVKEDGLNSELIEVAPE-HVIVVRVEET 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEE 498
                  LEEV   V      VK  E+
Sbjct: 474 RDETVLPLEEVKDQVVAALSAVKAEEQ 500


>gi|206578972|ref|YP_002240079.1| peptidylprolyl isomerase [Klebsiella pneumoniae 342]
 gi|206568030|gb|ACI09806.1| peptidylprolyl isomerase [Klebsiella pneumoniae 342]
          Length = 624

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 134/646 (20%), Positives = 285/646 (44%), Gaps = 44/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G +    V  Q++    F N+ 
Sbjct: 1   MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             E   + Q++G        N    ++  + +++L+ L+  + LDQ+  ++GL     +V
Sbjct: 60  ASERNRMQQQLGDQFSELAANENYMKT--MRQQVLNRLIDESLLDQYARELGLSISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MR 173
              I ++  F   + KF +  F   +A+ G+   +Y       L+   ++    G   M 
Sbjct: 118 KQAIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFML 176

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           P     DQ      + R V    +N   + A    S+  +  ++++ +  + APE  R+S
Sbjct: 177 PGES--DQLAALVSQQRVVREATINVNTLAAKQTASDEEINAFWQQNQARFMAPEQFRVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D    ++    S++E+Q+ Y+++K+++  P+      +    + +A      L+KG
Sbjct: 235 YIKMDAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKG 292

Query: 294 KKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F  LA+E+   +     G    + +E      L D+   L +KG  + VI  S G+++
Sbjct: 293 ADFATLAKEKSTDIISARNGGDMGWMEEASTVPELKDA--GLKEKGQLSGVIKSSVGFLV 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408
           A + +++P+      +V+ DIA +++     EK  + Y  L++ ++   S D   ++   
Sbjct: 351 ARLDDVQPAQVKPLADVRNDIAAKVK----QEKALDAYYALQQKVSDAASNDNESLAGAA 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           ++  + +    + G+D   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QVAGLKVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E      + L EV   V    K  K  ++    A++L L   K+GK    + K  G 
Sbjct: 467 RISEHKAEAVKPLAEVKAQVSDIVKHNKAEQQAKLDADKL-LAALKDGKGDEAM-KAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQV-FSGPV--EMVKCFPIENGLS--YVVFKVTNSKV 581
           S      ++R        G D +SQ+ F+ P+  +    + + + +    V+  +   K 
Sbjct: 525 SFGAPQTLSRT-------GQDPLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKA 577

Query: 582 G--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           G  P ++K   +  +TQ   +   +++++ L+    + + D++ Q+
Sbjct: 578 GNMPEEQKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623


>gi|332305578|ref|YP_004433429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172907|gb|AEE22161.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 627

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 125/608 (20%), Positives = 260/608 (42%), Gaps = 61/608 (10%)

Query: 1   MLEIIRKASR-TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           MLE IR+ ++ TW   I  +V+ + F+  G+   + S S  +    V  + +  +    +
Sbjct: 1   MLERIREGTQGTWAMAILGLVI-LSFVFAGVGSYINS-SADTAAAKVNDETISQADLERA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E G +  + G    +  A S  L +    +LD L+    ++Q   D+GL     ++ 
Sbjct: 59  YQNERGRMESQYGEAFAALTADSAYLQQFRQGVLDRLIGDKLIEQAAVDLGLRVSDAQIK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   D KF ++ + + L + G    E+ D+    ++R  +    +G      
Sbjct: 119 QAIVAMPEFQF-DGKFDNERYSAVLRQAGFQPNEFRDYMRVDMTRRQLSNALLGSEFTLL 177

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
               QA +   + R   Y+ +           S + +  +++     +   +   ++Y+ 
Sbjct: 178 EETTQAYKLQQQTRDARYLTVPADMFKGDVTVSQSDVENYYQANITQFDTQQQVSLAYVE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQS 289
             V +    IE+S DE +  YE+N + + + E R    ++          +++A++    
Sbjct: 238 LSVDDLLAGIEVSEDEAEQYYEQNIQDFRTQEERRASHILIEFGDDQQKAEQQAEDILAK 297

Query: 290 LKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           +  G+ F +LAE         E G  L   S+G      + D +  D+ F+L   GD + 
Sbjct: 298 INNGEDFAELAETFSSDTFSAENGGDLDWFSMG------MMDPAFEDAAFALQNVGDVSD 351

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT- 399
           V+   FG+ I  ++++KP  T  F +VK+D+  +++  +A E+      R+ E +A  T 
Sbjct: 352 VVESEFGFHIIKLTDVKPEETSPFADVKEDVIAKLKAERAEEEFYAKQLRMAE-VAFETP 410

Query: 400 -SMDEISRREKIVSIDLPLV-----DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
            ++DE++    I  +D+        D A + V    V +  + ++L+      +D ++ D
Sbjct: 411 DTLDEVA---AIAEVDVKTTVMFSQDSAPQAVNYPNVVSQAFSDELI------NDQVNSD 461

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
             + L D   M++++ +    R + L+EV  ++  D    + A++ + +  + VL   + 
Sbjct: 462 -VIELEDNHVMFIRVADYEAQRTKSLDEVSVEI-NDILLAEQAQQAAKEWAETVLSDIQS 519

Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENK-------FFGYDG------ISQVFSGPVEMV 560
            +N  D  +  G      N + R  ++         F   DG      + ++F+G V +V
Sbjct: 520 QQNVSDKLQTKGIEWQEQNAVTRNASQVSPAVVTALFKLTDGEESNGQVVELFNGDVALV 579

Query: 561 KCFPIENG 568
           +   +  G
Sbjct: 580 QLLEVNEG 587


>gi|294635328|ref|ZP_06713825.1| peptidylprolyl cis-trans isomerase D [Edwardsiella tarda ATCC
           23685]
 gi|291091304|gb|EFE23865.1| peptidylprolyl cis-trans isomerase D [Edwardsiella tarda ATCC
           23685]
          Length = 626

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 174/394 (44%), Gaps = 26/394 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V K+ L ++ + F++ G+ + L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSGD-YAAKVDGQEISRAQLEQAV 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G    V+         L +++L  ++    LDQ+ + + L     +V  
Sbjct: 60  QNERSRLQQQLGDQFSVLAGNEGYMKELRQQVLSRMIDDVLLDQYAKKLNLAISDAQVKE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   DN F +  ++  +AR G+      D Y +++ +  V    + G   +  
Sbjct: 120 AIRTLPYFQ-TDNHFDNAKYLEMVARLGLTP----DSYAQLMRQQLVTQQLIQGFTATGF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            L            + R ++   ++ + +      S+A L  +++++++++ APE  R+S
Sbjct: 175 TLPSEVSSLAALTMQQRLINLATIDIKQLMPQQKVSDAELQGYYQQHQNSFIAPEAVRVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D      K+ +S+ E+ A Y+++K  +  PE      +   ++ EA    + L KG
Sbjct: 235 YIEMDAAAINDKMTVSDAEISAYYDQHKRSFTQPERNKYSVIQVKSEAEAKAIAEQLAKG 294

Query: 294 KKFIQLAEEQGKSLSDI-------SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             F  LA+E     SDI        LG    E  P   L      L  KG  +  I  S 
Sbjct: 295 ADFATLAKEHS---SDIISRKNGGELGWMEPESTPQEILN---AKLTTKGQVSAPIASSV 348

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           GY+I  + +++P+      EV+  IA++++  K+
Sbjct: 349 GYLIVRLDDMQPAVIKPLSEVRAAIADKVKQQKS 382


>gi|288936830|ref|YP_003440889.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
           At-22]
 gi|288891539|gb|ADC59857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
           At-22]
          Length = 624

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 134/646 (20%), Positives = 285/646 (44%), Gaps = 44/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G +    V  Q++    F N+ 
Sbjct: 1   MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             E   + Q++G        N    ++  + +++L+ L+  + LDQ+  ++GL     +V
Sbjct: 60  ASERNRMQQQLGDQFSELAANENYMKT--MRQQVLNRLIDESLLDQYARELGLSISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MR 173
              I ++  F   + KF +  F   +A+ G+   +Y       L+   ++    G   M 
Sbjct: 118 KQAIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFML 176

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           P     DQ      + R V    +N   + A    S+  +  ++++ +  + APE  R+S
Sbjct: 177 PGES--DQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D    ++    S++E+Q+ Y+++K+++  P+      +    + +A      L+KG
Sbjct: 235 YIKMDAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKG 292

Query: 294 KKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F  LA+E+   +     G    + +E      L D+   L +KG  + VI  S G+++
Sbjct: 293 ADFATLAKEKSTDIISARNGGDMGWMEEASTVPELKDA--GLKEKGQLSGVIKSSVGFLV 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408
           A + +++P+      +V+ DIA +++     EK  + Y  L++ ++   S D   ++   
Sbjct: 351 ARLDDVQPAQVKPLADVRNDIAAKVK----QEKALDAYYALQQKVSDAASNDNESLAGAA 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           ++  + +    + G+D   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QVAGLKVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E      + L EV   V    K  K  ++    A++L L   K+GK    + K  G 
Sbjct: 467 RISEHKAEAVKPLAEVKAQVSDIVKHNKAEQQAKLDADKL-LAALKDGKGDEAM-KAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQV-FSGPV--EMVKCFPIENGLS--YVVFKVTNSKV 581
           S      ++R        G D +SQ+ F+ P+  +    + + + +    V+  +   K 
Sbjct: 525 SFGAPQTLSRT-------GQDPLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKA 577

Query: 582 G--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           G  P ++K   +  +TQ   +   +++++ L+    + + D++ Q+
Sbjct: 578 GNMPEEQKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623


>gi|262394811|ref|YP_003286665.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. Ex25]
 gi|262338405|gb|ACY52200.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. Ex25]
          Length = 619

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 121/532 (22%), Positives = 240/532 (45%), Gaps = 33/532 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           M++ +R+   +   KI L ++ + F+  G+    + VSG++ +   VG  ++P   F  +
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGS--YIVSGNNNSAAKVGNTEIPRGEFEMA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLD---KKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E   +  ++G   +   A    ++   K +LD +++   LDQ  E +GL     +V 
Sbjct: 59  YQNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVR 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   + +F  +++ + L R G +     D + + + R  V    +  ++ S 
Sbjct: 119 SMILDMPQFQS-NGQFDQEIYQASLRRAGFSP----DSFAEYMRRELVREQLLNALQNSE 173

Query: 177 LLLD---QAK-RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    QA+ + + + R +  I ++        + ++  + Q+++   DN+  PE  ++
Sbjct: 174 FILPGEVQAEGKLFTQTRDIRTIKIDLAEFAKNIELTDEEIQQYYKANPDNFTRPEQVKV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSL 290
           +YI       ++++ +S+ E++  Y+++  KY S E R V  ++     E  A      L
Sbjct: 234 AYIELSAEALKEQVNVSDAEVKKYYDEHLNKYSSEEQRRVAHILVEGDDEAKAQAILDEL 293

Query: 291 KKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F  LA+E+    G + +   LG   ++ + D +  ++ F+L   GD + ++   F
Sbjct: 294 NAGADFATLAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDTSGLVKSDF 352

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           GY I  +  +K S    F+EV  +I  +M   +A ++  E    LE  +A     D +  
Sbjct: 353 GYHIIKLEELKDSVAKPFEEVAAEIKQEMVDQQAVDQFYELQSELER-VAFEYP-DSLYD 410

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
             + V+ ++   DF  + V   EV   P   Q +     K+D L+ +     P+   + V
Sbjct: 411 ASQAVNQEVKTTDFISQ-VDAPEVLRNPAVMQAILSPEVKEDGLNSEAIEVAPE-HIIVV 468

Query: 467 QIKESIPARDRK---LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           ++++   ARD     LEEV   V  +   VK  ++      Q+V    KEGK
Sbjct: 469 RVED---ARDETVLPLEEVKDQVIAELSRVKGEQDAMELGTQVVAAL-KEGK 516


>gi|261341042|ref|ZP_05968900.1| peptidylprolyl cis-trans isomerase D [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316907|gb|EFC55845.1| peptidylprolyl cis-trans isomerase D [Enterobacter cancerogenus
           ATCC 35316]
          Length = 624

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 185/394 (46%), Gaps = 28/394 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLIG-GGANYAAKVNGQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L ++ L+ L+  A LDQ+ +++GL     +V 
Sbjct: 60  AGERNRMQQQLGDQF-SELAANEGYMNNLRQQTLNRLIDEALLDQYAKNLGLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +  F   + KF +  + S + + G+   +Y       L+   ++   VG    ++
Sbjct: 119 KAIFSTQAFQ-SNGKFDNTRYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVG----TD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    S+A +  W+E+ K+++ APE  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQQVSDAEVNAWYEQNKNSFVAPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    +     S+ ++Q+ Y+++++++  P+      +    + +A      L K
Sbjct: 234 SYIKLDAAALQGN--ASDADIQSYYDQHQDQFTQPQRNRYSVIQTKTEADAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           G  F  LA  + KS   IS      +G       PD  L ++   L  KG  + VI  S 
Sbjct: 292 GADFATLA--KAKSTDIISAKNGGDMGWLEAATTPD-ELKNA--GLKDKGQLSGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           G+++A + +++ + T    EV+ +IA +++  KA
Sbjct: 347 GFLVARLDDVQAAKTKPLAEVRDEIAAKVKQEKA 380


>gi|167624682|ref|YP_001674976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
 gi|167354704|gb|ABZ77317.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
          Length = 621

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 196/424 (46%), Gaps = 50/424 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57
           MLE IR+ S+  +AK  LV++ + F   G+S  L    GSST V   +V  +++  S+  
Sbjct: 1   MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYL----GSSTEVAAATVNGEEISNSALE 56

Query: 58  NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +++ E   + Q++G     ++++      + + +L+ LV+   LDQ   ++GL     +
Sbjct: 57  QAYQNERSRLEQQLGDMFATLSADDNYMQSVKQSVLERLVAETLLDQNAAELGLRVSDEQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   I   P F   D +F +D + + L + G     + D     ++R  +V   VG    
Sbjct: 117 IKAAIMTEPAFQ-TDGRFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVATLVG---- 171

Query: 175 SNLLLDQAKRFYF----ENRSVDYIVLNNRHVPAIADPS--NAVLTQWFEKYKDNYRAPE 228
           S  +L    ++      + R +DY V++    P +AD S  +  +  +++   D +  PE
Sbjct: 172 SEFVLPGEAKYLADLQGQTRDIDYKVID--ATPFLADISVTDEQIKTYYDSNLDQFIRPE 229

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-- 286
              + YI  D  +  K +++++ + QA Y+++K  Y   E R    ++     +   A  
Sbjct: 230 VVSLDYIELDAKDLAKDVKVTDADAQAYYDEHKANYTQAEKRLAAHILVQAGDDDAAAKA 289

Query: 287 -----FQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
                ++ L+ G  F +LA+         EQG  L     G    E+  D +L    F+L
Sbjct: 290 KAEAIYKQLQDGADFAELAKTESEDTFSGEQGGQLDWFEAGVMEPEF--DTAL----FAL 343

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             KGD++ V+  +FGY I  + +I+      F +VK+ I  Q++  +A +K  E    L+
Sbjct: 344 -NKGDYSNVVKTNFGYHIIKLLDIQAGAEAPFADVKEKIIAQLQEKQAVDKFYE----LQ 398

Query: 393 EFLA 396
           + LA
Sbjct: 399 QVLA 402


>gi|37527725|ref|NP_931070.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787161|emb|CAE16237.1| Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 623

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 181/391 (46%), Gaps = 20/391 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI L ++ + F++ G+   L S +GS     V  Q +  +    ++
Sbjct: 1   MMDNLRTAANSPVLKIVLALIILSFVLTGVGGYLTSGAGS-YAAEVNGQAISRAQLEQAF 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +QE   + +++G    V+ S+      +  + LD L++ A +DQ+  ++GL A   +V  
Sbjct: 60  QQERNALQEQLGDKFSVLASDEQSMKQIRNQALDRLINNALIDQYSRELGLSASDEQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175
            I  +  F   D KF ++ ++  L R  ++   + +   + L    ++  F G     P 
Sbjct: 120 SIRNTSYFQ-TDGKFDNNKYLELLNRFNMSPDIFAEQTRQNLVNQQLIMAFSGSEIALPG 178

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            + L+       + R+     L  + + A  + ++  L  ++   K ++ A E  +ISYI
Sbjct: 179 EVKLN--AELLLQQRTARIATLELKKIQAQQEVTDKDLQDYYNLNKSSFIASEEVKISYI 236

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
             D  ++  K+  ++ ++ A YE N ++Y  PE +    +    + EA   F  L KG  
Sbjct: 237 KMDAVDEMNKVSATSADVDAYYEHNLKRYTQPEQKKYSLIQLATESEARTVFDELNKGAD 296

Query: 296 FIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           F +LA +  KS    S      +G   ++ +P+  L  +  +L +KG  + VI    G+ 
Sbjct: 297 FGKLATK--KSTDKFSAKNHGEIGWMEEDALPE-ELKQA--NLKEKGQISSVIKVPNGFA 351

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           I H+ ++KP       EV+ +I   ++  KA
Sbjct: 352 IFHLDDVKPQIIKPLSEVRSEIEKMVKQEKA 382


>gi|290474659|ref|YP_003467539.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
           outer membrane proteins [Xenorhabdus bovienii SS-2004]
 gi|289173972|emb|CBJ80759.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
           outer membrane proteins [Xenorhabdus bovienii SS-2004]
          Length = 623

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 183/408 (44%), Gaps = 30/408 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G++  L S  G +    V  Q +  +    ++
Sbjct: 1   MMDNLRTAANGPVLKIVLALIILTFVLTGVTGYL-SSEGGNYAAKVNGQTISRAQLEQAF 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +Q+   +  ++G     + S+  +   + +  LD L++    DQ+   +GL A   +V  
Sbjct: 60  QQDKIALQDRLGDQFSTLLSDEQKVQQIRRSSLDRLITVILSDQYARKLGLSASDEQVKE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI   P F   D KF ++ +++ L     +   + +   + L    ++ +  G       
Sbjct: 120 EIRNLPFFQ-TDGKFDNNKYLTLLTGANRSPDNFAEQVRQDLINRQLMSILTGSEIALPT 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            + Q     F+ R+V +  L  + + A    ++  L  +++   +++  PE  ++SYI  
Sbjct: 179 EIKQETALAFQERTVRFATLELKSIEAQQKVTDKELKNYYDVNSNSFTVPEKVKVSYIKM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D  ++ K + +S+ +++  Y+ N  +Y   E +    +   +  EA      LKKG  F 
Sbjct: 239 DAADELKSVTVSDADIEKYYKNNLPQYMQVEQKKYSMVQLVSDAEAKSVLDELKKGADFS 298

Query: 298 QLAEEQGKSLSDISLGSFSKE------YIPDVSLADSIFS--LAKKGDFTPVIHGSFGYV 349
           +LA E+       S   FS +      ++ + SL D I S  L +KG  + VI  S GY 
Sbjct: 299 KLAAEK-------STDKFSAQKGGDLGWMEESSLPDEIKSAKLIEKGQLSGVIKLSGGYA 351

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
           I  + +IKP    S  EV+ +I          EK+ +  K ++ F AL
Sbjct: 352 IFRLDDIKPQIIKSLVEVRSEI----------EKIVKQEKAVDAFYAL 389


>gi|290510114|ref|ZP_06549484.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. 1_1_55]
 gi|289776830|gb|EFD84828.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. 1_1_55]
          Length = 624

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 134/646 (20%), Positives = 285/646 (44%), Gaps = 44/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G +    V  Q++    F N+ 
Sbjct: 1   MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             E   + Q++G        N    ++  + +++L+ L+  + LDQ+  ++GL     +V
Sbjct: 60  ASERNRMQQQLGDQFSELAANENYMKT--MRQQVLNRLIDESLLDQYARELGLSISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MR 173
              I ++  F   + KF +  F   +A+ G+   +Y       L+   ++    G   M 
Sbjct: 118 KQAIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFML 176

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           P     DQ      + R V    +N   + A    S+  +  ++++ +  + APE  R+S
Sbjct: 177 PGES--DQLAALVSQQRVVREATINVNALAAKQTVSDEEINAFWQQNQARFMAPEQFRVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D    ++    S++E+Q+ Y+++K+++  P+      +    + +A      L+KG
Sbjct: 235 YIKMDAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKG 292

Query: 294 KKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F  LA+E+   +     G    + +E      L D+   L +KG  + VI  S G+++
Sbjct: 293 ADFATLAKEKSTDIISARNGGDMGWMEEASTVPELKDA--GLNEKGQLSGVIKSSVGFLV 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408
           A + +++P+      +V+ DIA +++     EK  + Y  L++ ++   S D   ++   
Sbjct: 351 ARLDDVQPAQVKPLADVRNDIAAKVK----QEKALDAYYALQQKVSDAASNDNESLAGAA 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           ++  + +    + G+D   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QVAGLKVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +I E      + L EV   V    K  K  ++    A++L L   K+GK    + K  G 
Sbjct: 467 RISEHKAEAVKPLAEVKAQVSDIVKHNKAEQQAKLDADKL-LAALKDGKGDEAM-KAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQV-FSGPV--EMVKCFPIENGLS--YVVFKVTNSKV 581
           S      ++R        G D +SQ+ F+ P+  +    + + + +    V+  +   K 
Sbjct: 525 SFGAPQTLSRT-------GQDPLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKA 577

Query: 582 G--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           G  P ++K   +  +TQ   +   +++++ L+    + + D++ Q+
Sbjct: 578 GNMPEEQKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623


>gi|127513432|ref|YP_001094629.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
 gi|126638727|gb|ABO24370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
          Length = 621

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 137/653 (20%), Positives = 280/653 (42%), Gaps = 75/653 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  +AK  LV++ + F   G+S  L S S   +  +V  +++  S+   ++
Sbjct: 1   MLEKIREGSQGVIAKGILVLVILSFAFTGVSSYLGS-SSEPSAATVNGEEISKSALEQAY 59

Query: 61  KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +   + S  +    + + +L+ L++   +DQ   D+GL     ++  
Sbjct: 60  QSERARLEQQLGDMYDTLASNESYLASVKQNVLERLIADKLVDQAAADLGLTVSDQQIKT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +D +++ + + G     + D     ++R  +V   VG    S  
Sbjct: 120 AIMNEPAFQ-TDGKFDNDRYLALIRQLGYQANSFRDMMRGDMTRRQLVVTVVG----SEF 174

Query: 178 LLDQAKRFYF----ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           +L     +      + R + Y V++   + A    S+     ++++ +  +  PE   + 
Sbjct: 175 VLPGEAEYLAKIQGQTRDIRYHVVDAEPMLATVSVSDEEANTYYQQNQSLFVRPETISLD 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--------------- 278
           YI    ++    I++S++E +  Y++NK +Y  PE R    ++                 
Sbjct: 235 YIELSANQLASAIQVSDEEAKTYYDENKAQYLQPEKRLAAHILVSLGDDEDAAKAKAEAI 294

Query: 279 -NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
             + +A E F++L K       + EQG  L     G      + +     ++F+L +KG 
Sbjct: 295 MTKLKAGEDFEALAKSDSDDSFSGEQGGKLDWFEQG------VMEAPFDQALFAL-EKGQ 347

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LA 396
           ++ ++  SFGY I  + +++ + T  F+ VK  I  Q++  KA  +     +RL +    
Sbjct: 348 YSDIVKTSFGYHIIKLLDLQAASTSPFEAVKDKIVAQIQQDKAVNEFYTLQQRLSDVSYE 407

Query: 397 LGTSMDEISRREKIVSIDLPLV--DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           +  ++ E ++   +     P+   D A + +   +V    +   +L       D ++ D 
Sbjct: 408 VPDTLAEAAKEVGVAVKTSPVFTRDNAPEPLNSADVLKAAFSNTVLL------DGMNSD- 460

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
            + L D   + V++ +   A   +  +V   + +  K  K  E    KA +++       
Sbjct: 461 VIELGDNHVVVVRVNKHAAAGTMEFADVKATIVERLKQDKANELARDKAQEMMAAIK--- 517

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVF--SGPVE--MVKCFPIENG 568
                 G  + A ++T  Q++R +      G D   +S+ F  + P E  +V    + NG
Sbjct: 518 ------GGEIPAEMITRTQLSRGEQ-----GIDTSIVSKAFEMAQPAEQFVVDTAALANG 566

Query: 569 LSYVVFKVTNSKVGPVQEKDK-FISYLTQMMNKDLLD----SVIAYLKSQYSV 616
            + V+      KV   +  D+  ++ L Q +N    +    ++IA LK+Q  V
Sbjct: 567 YAVVIL----DKVNQAESVDESLVTALKQRLNSQYSENDYRALIAALKAQAEV 615


>gi|261822503|ref|YP_003260609.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Pectobacterium
           wasabiae WPP163]
 gi|261606516|gb|ACX89002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           wasabiae WPP163]
          Length = 627

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 139/656 (21%), Positives = 278/656 (42%), Gaps = 64/656 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++   F++ G+ D L   SG      V  Q++       + 
Sbjct: 1   MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSGD-YAAKVNGQEITRGQLEQAV 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G    ++ S       L K+ L  L+    LDQ+   +GL     ++  
Sbjct: 60  QNERSRQQEALGENFSILASNDGYMQQLRKQALSQLIDETLLDQYANKLGLNISDEQIRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +  F ++ ++ ++ R G+      D Y +ML +       + G   +  
Sbjct: 120 AIFDVPAFQ-TNKHFDNEKYLDQVRRLGVTP----DMYAQMLRKQLTSQQLIRGFGNTAF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           LL    D   +   ++R V    ++          ++  +  ++++ K  + APE  ++S
Sbjct: 175 LLPQEIDNLVKLAAQDRVVRVATIDVAAKAKALTVADDEVQSYYDQNKGRFIAPEEFKVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D       ++I +  +   YE+NK  Y  PE +    +   N+ +A     +LK+G
Sbjct: 235 YITLDAASIMDNVKIDDKAINDFYEQNKNDYSQPERKKFSVIQVKNEADATSVLDALKQG 294

Query: 294 KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
             F  LA+E+    +S  + G     ++ + S  D +    LA+KG  +  I  S GY+I
Sbjct: 295 GDFATLAKEKSTDIISRRNGGDLG--WMDENSTIDELKQAKLAEKGQVSSAIKSSVGYLI 352

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408
             + +++P       +V+ +IA +++     EK ++ +  L++ ++   S D   ++  E
Sbjct: 353 VRLDDVQPQQVKPLSDVRAEIAEKVK----HEKAQDGFYALQQKVSEAASNDNESLASAE 408

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYK--EQLLFR--VFGKDDPLSKDHTVALPDGSYM 464
           +   I     D+  ++   +  AA+ +K   Q +F   + G++     +  V   DG   
Sbjct: 409 EAAGIKATQTDWFTRE---QVPAALNFKPVTQSIFNGALLGENGAAGNNSDVINVDGDRA 465

Query: 465 WV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           +V +I E  P   R L++V T++ +  K  K  ++    A +++ E  K+GK+  D  K 
Sbjct: 466 FVLRITEYRPESTRPLDQVRTEIVEALKRQKAEQQARVDAEKILAEL-KQGKD--DALKA 522

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
            G S      ++ +       G      +F+ P       P ++  SY    +T  + G 
Sbjct: 523 AGLSFGQAKTLSSISQ-----GDATAEAIFAMP------HPEKDKPSYT---ITQDQAGN 568

Query: 584 V---------------QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +               ++K +F S + Q     L DS+++ L+S+  + + +   Q
Sbjct: 569 IVLAALDSVTPHQLNDEQKTQFASQVQQGSLGALFDSLLSSLRSEAKIKMGNAAAQ 624


>gi|163751873|ref|ZP_02159087.1| peptidyl-prolyl cis-trans isomerase D [Shewanella benthica KT99]
 gi|161328223|gb|EDP99387.1| peptidyl-prolyl cis-trans isomerase D [Shewanella benthica KT99]
          Length = 621

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 181/397 (45%), Gaps = 32/397 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+AS+  +AK  LV++   F   G+S  L S S  +   +V  +++  S+   ++
Sbjct: 1   MLEKIREASQGVIAKSILVLVIFSFAFSGVSSYLGS-STEAAAATVNGEEISESALEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A    L    + +L+ LV+   LDQ   ++GL     ++  
Sbjct: 60  QSERARLEQQLGEMFQALAADDTYLASVKQSVLERLVAEKLLDQSATELGLRVSDQQIKN 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175
            I   P F   D +F +D +++ L + G     + +     ++R  +V   VG   + P 
Sbjct: 120 AIMTEPAFQ-TDGQFDNDRYLAILRQLGYQANTFRNMMRTDMTRRQLVASLVGSEFVLPG 178

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            +          + R + Y +++     A  + ++     +F+     + +PE   + YI
Sbjct: 179 EI--SYLAGIQGQTRDIRYHIVDASPFVADVEVTDEQAQSFFDANLAQFMSPETLSLEYI 236

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQ 288
             +  +    + +++ E QA Y++NK++Y   E R    ++         ++ +A+  + 
Sbjct: 237 ELNATDMANDVTVTDAEAQAYYDENKQQYLKAEKRLAAHILINLGDDESASKAKAEAIYA 296

Query: 289 SLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
            L+ G  F QLA+         EQG  L     G      + +++  D ++SL+ KG ++
Sbjct: 297 KLQAGDDFAQLAKTESEDTFSGEQGGQLDWFEQG------VMELAFDDVLYSLS-KGSYS 349

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
            V+  SFGY I  + +I+P     F +VK  I  Q++
Sbjct: 350 TVVKTSFGYHIIKLLDIQPEVEAPFVDVKDKIIAQLK 386


>gi|307129932|ref|YP_003881948.1| peptidyl-prolyl cis-trans isomerase D [Dickeya dadantii 3937]
 gi|306527461|gb|ADM97391.1| peptidyl-prolyl cis-trans isomerase D [Dickeya dadantii 3937]
          Length = 626

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/442 (22%), Positives = 197/442 (44%), Gaps = 36/442 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++   F++ G+ D L   SG      V  Q++  +      
Sbjct: 1   MMDNLRAAANNVVLKIILALIIGSFVLTGVGDYLIRGSGD-YAAKVNGQEITRAQLEQGV 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G     + +       L K++L  L+    + Q+   +GL     +V  
Sbjct: 60  QNERSRQQEMLGENFSALAANEGYMQQLRKQVLSQLIDETLVVQYAHTLGLNISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +N+F +D +++++ + G+      D Y + L +  +    + G+  ++ 
Sbjct: 120 AIFSVPEFQ-TNNRFDNDKYLAQVRQLGLTP----DAYAQFLRKQLLTQQLIRGLGNTDF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           +L    D       ++R++    ++          S+  +  ++++ K+ Y APE  ++S
Sbjct: 175 VLQQELDNLVAMASQDRTIRTATIDLSARARNQTVSDEEVKNFYDQNKNRYLAPEQFKVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI+ D      K ++ N ++ A YE++K ++  PE +    +    + +A  A + LKKG
Sbjct: 235 YIMLDAASIMDKTKVDNADIAAYYEQHKSEFTQPERKKYSVIQLKTEADAKAALEQLKKG 294

Query: 294 KKFIQLAEEQGKSL-SDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
             F  LA+E+   + S  + G     ++ D S  D I    L +KG  + VI  S GY+I
Sbjct: 295 ADFAALAKEKSTDIVSRRNGGDLG--WMDDGSTVDEIKQAGLKQKGQLSDVIKSSVGYLI 352

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE------- 403
             + +I+     +  EV+ D+A         EKVK + K L+ F +L   + E       
Sbjct: 353 IRLDDIQAQHVKALDEVRADLA---------EKVKRE-KSLDAFYSLQQKISEAASNDNE 402

Query: 404 -ISRREKIVSIDLPLVDFAGKD 424
            ++  EK+ +I     D+  +D
Sbjct: 403 SLASAEKVANIKAVQTDWFTRD 424


>gi|197334554|ref|YP_002155561.1| peptidyl-prolyl cis-trans isomerase D [Vibrio fischeri MJ11]
 gi|197316044|gb|ACH65491.1| peptidyl-prolyl cis-trans isomerase D [Vibrio fischeri MJ11]
          Length = 618

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 170/380 (44%), Gaps = 13/380 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ IR+ S     KI L ++   F+  G+   L    G      VG +++  + F   +
Sbjct: 1   MMDRIREGSTGLAVKIILGLIIFSFVFAGVGSYLVG-GGQPLAAKVGEREITRNEFEQVY 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G     +  + A      K +LD +V+ A LD   +D+GL     ++  
Sbjct: 60  QNERNRMQSQLGEYFATLLGDPAYVEQFRKSVLDRMVNDALLDNQAQDLGLRISDDQIRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV-GMFVGGMRPSN 176
            I   P F  KD KF  +++   L R G +   +  +  + L+R  +V  +       SN
Sbjct: 120 TILSMPQFQ-KDGKFDEEIYNISLRRAGFSSDSFAAYLRQDLARNQLVMALESTEFTLSN 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +  QA     + R +  I LN       A  ++  +T+++   K  +  PE  ++SY+ 
Sbjct: 179 EVQAQAA-LETQQREIRTITLNTADFAKNAKVTDEEITEYYNANKQQFVRPEQVKVSYVE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEAFQSLKKGKK 295
              +  + +  I++ E++  Y+ N +KY + E R V   L+  ++ +A +    +  G+ 
Sbjct: 238 LSGNSLKAQAPITDKEIEEYYQANLDKYSTQEKREVSHILIKGDEADAQKVLDRINNGED 297

Query: 296 FIQLAEEQGKSLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  +A++  + +       SLG   +  I D    D+ F LAK GD + ++  +FG+ I 
Sbjct: 298 FATVAKDASQDIPTAKEGGSLGWIERGVI-DPEFEDAAFQLAKVGDHSGIVKSAFGFHII 356

Query: 352 HVSNIKPSFTVSFQEVKKDI 371
            ++ I+   T    EV  DI
Sbjct: 357 QLNGIEEPTTKPLAEVSADI 376


>gi|59711407|ref|YP_204183.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Vibrio fischeri
           ES114]
 gi|59479508|gb|AAW85295.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Vibrio fischeri
           ES114]
          Length = 618

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 170/380 (44%), Gaps = 13/380 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ IR+ S     KI L ++   F+  G+   L    G      VG +++  + F   +
Sbjct: 1   MMDRIREGSTGLAVKIILGLIIFSFVFAGVGSYLVG-GGQPLAAKVGEREITRNEFEQVY 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G     +  + A      K +LD +V+ A LD   +D+GL     ++  
Sbjct: 60  QNERNRMQSQLGEYFATLLGDPAYVEQFRKSVLDRMVNDALLDNQAQDLGLRISDDQIRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV-GMFVGGMRPSN 176
            I   P F  KD KF  +++   L R G +   +  +  + L+R  +V  +       SN
Sbjct: 120 TILSMPQFQ-KDGKFDEEIYNISLRRAGFSSDSFAAYLRQDLARNQLVMALESTEFTLSN 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +  QA     + R +  I LN       A  ++  +T+++   K  +  PE  ++SY+ 
Sbjct: 179 EVQAQAA-LETQQREIRTITLNTADFAKNAKVTDEEITEYYNANKQQFVRPEQVKVSYVE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEAFQSLKKGKK 295
              +  + +  I++ E++  Y+ N +KY + E R V   L+  ++ +A +    +  G+ 
Sbjct: 238 LSGNSLKAQAPITDKEIEEYYQANLDKYSTQEKREVSHILIKGDEADAQKVLDRINNGED 297

Query: 296 FIQLAEEQGKSLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  +A++  + +       SLG   +  I D    D+ F LAK GD + ++  +FG+ I 
Sbjct: 298 FATVAKDASQDIPTAKEGGSLGWIERGVI-DPEFEDAAFQLAKVGDHSGIVKSAFGFHII 356

Query: 352 HVSNIKPSFTVSFQEVKKDI 371
            ++ I+   T    EV  DI
Sbjct: 357 QLNGIEEPTTKPLAEVSADI 376


>gi|326403424|ref|YP_004283505.1| hypothetical protein ACMV_12760 [Acidiphilium multivorum AIU301]
 gi|325050285|dbj|BAJ80623.1| hypothetical protein ACMV_12760 [Acidiphilium multivorum AIU301]
          Length = 628

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 129/638 (20%), Positives = 251/638 (39%), Gaps = 26/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML +IR+    W+ + F VVL   F+ WG+S  +  +  S  + +VG Q +   +   ++
Sbjct: 1   MLSMIRQLLDNWIVRAFFVVLIGVFVFWGVSSVVMGIGASDAIATVGGQPIKIEAVNAAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI-----GLEADHGRV 115
           ++ L   + +     NS R  S G ++++  +   G  +D+   ++     G+ A    +
Sbjct: 61  QRTLNAYATQ-----NSGREPSKG-ERRLFADQALGTAIDRAAMELEARRMGVVAPPAAI 114

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             ++   P FHG D KF    F + LA   +    ++      L  + ++     G+   
Sbjct: 115 RQQVFAIPAFHGPDGKFDKATFNAVLANHNLTPAAFMAEIASGLKTSQIIDAVTAGVSAP 174

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
             L+DQ   +  + R+V +  L          P+  VL +++  +   +  P  +    +
Sbjct: 175 APLVDQIFAYAAQERTVQFAQLPFAAANPPPAPAETVLRRYWRDHPGRFSTPALRDADVV 234

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           +       +   +S  E+ A+Y++ K K+     RTVE +   + K A    ++ K G  
Sbjct: 235 VLSPALIARGEAVSQAEIAAQYQQEKAKFAQTPTRTVEIITAEDAKNAAALAKAWKGGAD 294

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +  + +    + +   + + +K      +        A  G+ +  + G+ G  +  V+ 
Sbjct: 295 WAAMQKAAAAATATAIVMTDAKPSDLPSATLAKAAFAATPGEVSAPVKGALGTYVFKVTK 354

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
                      V   I  ++++ KA   V      L++ LA  T++ ++     +    +
Sbjct: 355 AVAGGDKPLSAVADQIRAEIQLRKARNVVDNTLSHLQDALAGSTALGKLPASLHLAKARV 414

Query: 416 PLVDFAGKDVKGKEVAAIPYK---EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
             VD  G  V GK  A IP      Q + +      P +    V+ P  SY  + +   I
Sbjct: 415 S-VDREGMTVDGKP-AGIPGPAALRQAIVKAIFATAPGNTPQAVSGPGDSYYAIAVHRII 472

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
               +  ++V  DV  DW   +   +    A +L L   K GK         G ++ T+ 
Sbjct: 473 KPALKPYDKVKADVLADWTGAQVERQEEVAAAKL-LTAVKGGKTLAAAASAAGLTVTTSA 531

Query: 533 QINRMDNENKFFGYDGISQV-FS---GPVEMVKCFPIENGLSYVVFKVTNSKVGP-VQEK 587
            + R            ++QV FS   G   MV+    E  +  VV  +   K G      
Sbjct: 532 PMTRAKPAKGV--PPQLAQVAFSLKKGAPTMVQTQ--EGFVVGVVSDIAEPKPGSDAAFH 587

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            +    L Q M +D+L +  A L+ +  V ++  L+ +
Sbjct: 588 QRVADSLGQSMQEDVLQTYAAALRQRDHVKINTKLLNQ 625


>gi|262042477|ref|ZP_06015636.1| peptidylprolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040181|gb|EEW41293.1| peptidylprolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 638

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 133/645 (20%), Positives = 285/645 (44%), Gaps = 43/645 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G +    V  Q++    F N+ 
Sbjct: 16  MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 74

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             E   + Q++G        N    ++  + +++L+ L+  + LDQ+  ++GL     +V
Sbjct: 75  ASERNRM-QQLGDQFSELAANENYMKT--MRQQVLNRLIDESLLDQYARELGLSISDEQV 131

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MR 173
              I ++  F   + KF +  F   +A+ G+   +Y       L+   ++    G   M 
Sbjct: 132 KQAIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFML 190

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           P     DQ      + R V    +N   + A    S+  +  ++++ +  + APE  R+S
Sbjct: 191 PGES--DQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVS 248

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D    ++    S++E+Q+ Y+++K+++  P+      +    + +A      L+KG
Sbjct: 249 YIKMDAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKG 306

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIA 351
             F  LA+E+   +     G     ++ D S    +    L +KG  + VI  S G+++A
Sbjct: 307 ADFATLAKEKSTDIISARNGG-DMGWMEDASTVPELKDAGLKEKGQLSGVIKSSVGFLVA 365

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRREK 409
            + +++P+      +V+ DIA +++     EK  + Y  L++ ++   S D   ++   +
Sbjct: 366 RLDDVQPAQVKPLADVRNDIAAKVK----QEKALDAYYALQQKVSDAASNDNESLASAAQ 421

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-Q 467
           +  + +    + G+D   +E+   P  + +    + G++     +  +   DG   +V +
Sbjct: 422 VAGLKVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLR 481

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           I E      + L EV   V    K  K  ++   +A++L L   K+GK    + K  G S
Sbjct: 482 ISEHKAEAVKPLAEVKAQVSDIVKHNKAEQQAKLEADKL-LAALKDGKGDEAM-KTAGLS 539

Query: 528 LLTTNQINRMDNENKFFGYDGISQV-FSGPV--EMVKCFPIENGLS--YVVFKVTNSKVG 582
                 ++R        G D +SQ+ F+ P+  +    + + + +    V+  +   K G
Sbjct: 540 FGAPQTLSRT-------GQDPLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAG 592

Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             P ++K   +  +TQ   +   +++++ L+    + + D++ Q+
Sbjct: 593 SMPEEQKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 637


>gi|269958860|ref|YP_003328649.1| putative peptidyl-prolyl cis-trans isomerase [Anaplasma centrale
           str. Israel]
 gi|269848691|gb|ACZ49335.1| putative peptidyl-prolyl cis-trans isomerase [Anaplasma centrale
           str. Israel]
          Length = 632

 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 121/519 (23%), Positives = 221/519 (42%), Gaps = 38/519 (7%)

Query: 12  WVAKIFLVVL--FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           +V  +   VL  FV F+ +G        +    V  VG   +    +  +++ EL  I  
Sbjct: 7   FVGAVLAAVLCAFV-FVTFGSVLPFGDTASDRCVAKVGSNCLSLREYSTAYQGELAYIES 65

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
            +   ++ +  R  G+ +  L+ ++    L++F  ++GL      +   I   P+F  K 
Sbjct: 66  LVHQKLSEDDIRRFGVKEMTLNRMIDDMVLEKFARELGLRVSSKSIRDLIGDMPMFQDKS 125

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTK-----MLSRT------DVVGMFVGGMRPSNLL 178
            K     F   L+  G+ E  YI          MLS         V   +  G     L 
Sbjct: 126 GKLDERRFKDLLSDAGMTEASYIGKVRGSLPAFMLSECIFPRSGAVYSQYYDGFAQDVL- 184

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRISYIL 236
                R   ++R VD + ++   V     P++  L   + +   N     PEY+   Y++
Sbjct: 185 -----RGIMQSRIVDVVEISPSAVENTPTPTDNDLEAMYSEGTRNGELVMPEYRSAKYMI 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
               +  +++  S+DE+++E  KN E +   + R V  LVF ++ EAD A Q+LK GK F
Sbjct: 240 VSEDDALEEVTASDDEVESEI-KNSELH---DQRDVLNLVFSSESEADAASQALKGGKTF 295

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             + ++ G ++  I+L + +KE +P V +  ++F L   G+ + V     G+ I  + N 
Sbjct: 296 EAVVKDAGTTVEAITLKNVTKELLP-VEVRSAVFGL-NDGEVSGVFRSVVGWHIMKILNR 353

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISR--REKIVSI 413
            P      +++K+ +A  ++  KA E      ++  E ++ G  S  E+    R+  + +
Sbjct: 354 HPISKEDLKKLKERVAASIKRQKARELFSAGIRKANEMISHGAESFSEVESVFRKPTMGV 413

Query: 414 DLPLVDFAGKDVKGK-----EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
            L   D  G+D+ GK     E ++ P   + L  +          H V++ + +Y  V +
Sbjct: 414 -LQNFDSNGQDLTGKGHTYAEESSFPGIVEALPALAFSSQVGKPSHFVSIGN-AYFSVIV 471

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
            +  PAR R  +E    +   WK    A E+   A+ LV
Sbjct: 472 TDVTPARARTFDESKHLLLDRWKNAFVAGEMRKIASNLV 510


>gi|333010902|gb|EGK30328.1| PPIC-type PPIASE domain protein [Shigella flexneri K-272]
 gi|333020704|gb|EGK39964.1| PPIC-type PPIASE domain protein [Shigella flexneri K-227]
          Length = 623

 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 138/652 (21%), Positives = 283/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +  F   D KF +  +   L + G+      D Y + L         + G+  ++
Sbjct: 119 QAIFATSAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    D+      + R V    ++   + A    +   +  ++E+ K+N+   E  R+
Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPATEQEIASYYEQNKNNFMTSEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI       ++ +  S+ ++Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLVAAMMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
           G  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I
Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408
             + +I+P+   S  EV+ DIA +++     EK  + Y  L++ ++   S D   ++  E
Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466
           +   +      +  KD   +E+   P  + +    + G++     +  +   DG   +V 
Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++ E  P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G 
Sbjct: 467 RVSEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524

Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575
                  ++R        G D ISQ  F+ P       P ++  SY          V+  
Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|283479299|emb|CAY75215.1| putative protease maturation protein [Erwinia pyrifoliae DSM 12163]
          Length = 623

 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 118/536 (22%), Positives = 237/536 (44%), Gaps = 43/536 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R AS   V K+ L ++ + F++ G+   L   SG      V  Q++  +    ++
Sbjct: 1   MMDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSGD-YAAKVNGQEIGRAQLERAF 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E     Q +G    V+         + ++ L  L+    L Q+ ++IGL     ++  
Sbjct: 60  SSERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +  ++S +   G    +Y +   K L+   ++G   G    ++ 
Sbjct: 120 AIFTQPAFQ-TDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTG----TDF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           +L    D       + R V  + +N   + A  + +   +  ++++++ +  +PE  R+S
Sbjct: 175 VLGNETDSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSPEQFRVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D     + +  S  ++Q+ Y+++++ Y  P+      +    + EA     +L KG
Sbjct: 235 YIKMDASAMLQPV--SESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALNKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F +LA+E  KS   IS      +G    E  PD  L ++  +L +KG  + VI  S G
Sbjct: 293 GSFAKLAKE--KSADPISARNGGDMGWLEPETTPD-ELKNA--ALKEKGQLSDVITSSVG 347

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EIS 405
           +++A + + +P    +  EV  +IA +++     EK    + +L++ ++   S D   ++
Sbjct: 348 FIVARLDDTQPEKVKALSEVHDEIARKLK----QEKAVVAFYKLQQKVSDAASNDNESLA 403

Query: 406 RREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
             E++  +     D+  +D     +K K V    +   LL    G++     +  V   D
Sbjct: 404 SAEQVAGVKAVDTDWFDRDNLPAELKFKAVQDAIFNGALL----GENGAPGSNSEVITVD 459

Query: 461 GSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           G   +V +I+E  P   + L++V   +    K  K  ++  ++A++L+ E  K GK
Sbjct: 460 GDRAFVLRIREHKPEAVKALKDVAAQITDTLKQQKGLQQAKAQADKLLAEL-KAGK 514


>gi|86148518|ref|ZP_01066806.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. MED222]
 gi|85833709|gb|EAQ51879.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. MED222]
          Length = 621

 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 174/400 (43%), Gaps = 10/400 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+  +  +  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVG-SYITGGGNNAAAKVGNTEIARGEFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLD---KKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G       A    ++   K +LD +++   L+Q  E +GL     ++  
Sbjct: 60  QNERNRMQSQLGDYFAQMLADPTYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F     +F  +V+ S L R G + + + ++  + L R  +V    G       
Sbjct: 120 MILEMPQFQTA-GQFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   +   + R +  + L+   +    + ++  +  ++++    Y  PE  ++SYI  
Sbjct: 179 EIDIQSKLIAQTRDIRTVTLSVADLAKNIELTDEQIELYYQENPAAYTRPEQAKVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLKKGKK 295
                + ++E+S++E Q  Y+++ +KY + E R V  ++     E  A      L  G  
Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGAD 298

Query: 296 FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F  LAEE+        +G    + +  + D +  D+ F+L   GD T ++   FGY I  
Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERDVMDPAFEDAAFALVNIGDTTGLVKSDFGYHIIK 358

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +  +K S    + EV  +I  ++    A ++  E    LE
Sbjct: 359 LDELKASQAQPYTEVAAEIKTELLDQHAVDQFYEQQTELE 398


>gi|295096773|emb|CBK85863.1| Parvulin-like peptidyl-prolyl isomerase [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 623

 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 186/394 (47%), Gaps = 28/394 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLIG-GGANYAAKVNGQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L ++ L+ L+  A LDQ+ + +GL     +V 
Sbjct: 60  AGERNRMQQQLGDQY-SELAANEGYMKNLRQQTLNRLIDEALLDQYAKSLGLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +  F   + KF +  + S + + G+   +Y       L+   ++   VG    ++
Sbjct: 119 KAIFSTQAFQ-SNGKFDNARYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVG----TD 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    ++      + R V    ++   + A    S+A +  ++E+ K+N+ +PE  R+
Sbjct: 174 FMLKGETEELAALVAQQRVVREATIDVNALAAKQQVSDAEVNAYYEQNKNNFISPEQFRV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    ++    ++ E+Q+ Y+++++++  P+      +    + EA      L K
Sbjct: 234 SYIKLDAAAMQENA--TDAEIQSYYDQHQDQFTQPQRNRYSVIQTKTEAEAKAVLDELNK 291

Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           G  F  LA  + KS   IS      +G   +   PD  L ++   L +KG  + VI  S 
Sbjct: 292 GADFATLA--KAKSTDIISAKNGGDMGWLEESTTPD-ELKNA--GLKEKGQLSGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           G+++A + +I  + T    +V+ DIA +++  KA
Sbjct: 347 GFLVARLDDIVAAKTKPLADVRDDIAAKVKQEKA 380


>gi|156973716|ref|YP_001444623.1| peptidyl-prolyl cis-trans isomerse [Vibrio harveyi ATCC BAA-1116]
 gi|156525310|gb|ABU70396.1| hypothetical protein VIBHAR_01421 [Vibrio harveyi ATCC BAA-1116]
          Length = 619

 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 184/406 (45%), Gaps = 22/406 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R+   +   KI L ++ + F+  G+    + V G++   + VG  ++    F  +
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGS--YIVGGNNNAAAKVGNTEIARGEFEMA 58

Query: 60  WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V 
Sbjct: 59  YQNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVR 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   + KF  +++ + L R G +   + ++  + L R       +  ++ S 
Sbjct: 119 SMILDMPQFQS-NGKFDQEIYQASLRRAGFSPDSFAEYMRRELVRE----QLLNALQTSE 173

Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             L        + + + R V  I ++        D ++  +  +++   + +  PE  ++
Sbjct: 174 FTLPGEVQSEGKLFTQTRDVRTITIDLNEFAKKVDLTDEEIQDYYKANPEMFTRPEQVKV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSL 290
           +YI     E +K+I+IS+++++  Y+++ +KY + E R V  ++     E  A      L
Sbjct: 234 AYIELSADELKKQIQISDEDVKKYYDEHLDKYSTEEQRRVAHILVEGDDEAKAQAILDEL 293

Query: 291 KKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F +LAEE+    G + +   LG   ++ + D +  ++ F+L   GD T ++   F
Sbjct: 294 NGGADFAKLAEEKSNDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDITGLVKSDF 352

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY I  +  +K +    F EV  +I  +M   KA ++  E    LE
Sbjct: 353 GYHIIKLEELKGAVAKPFSEVAAEIKQEMVDQKAVDQFYELQNELE 398


>gi|237653309|ref|YP_002889623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T]
 gi|237624556|gb|ACR01246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T]
          Length = 631

 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 135/659 (20%), Positives = 281/659 (42%), Gaps = 67/659 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59
           M E +R   R  VA++ L +L VPF  +G+ DA FS SGS+     VG   +    F  +
Sbjct: 1   MFEAVRNNKR--VAQVILALLIVPFAFFGM-DAYFSDSGSANEAARVGGTTIGAWEFDQA 57

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +++   + Q  G  V+    +S  L + +L+NL++   L  +  +  L     ++   I
Sbjct: 58  LREQQDRLRQDGGGQVDRALLQSAELRRAVLENLINQRVLALYAAENRLVVTPQQLQETI 117

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG--GMRPSNL 177
           A    F  ++  FS   + + L  +G+    +     + +    +V   VG  G+ P   
Sbjct: 118 AGVASFQ-ENGSFSLQRYETLLRAQGMTPATFEARLAQDVRVQQIVAA-VGDAGIVPQA- 174

Query: 178 LLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
               A+RF     E+RSV    L+ + + A     +A ++ ++E     +  P   +  Y
Sbjct: 175 ---SARRFLDAQLESRSVREFRLSAKALAADVKVDDAQVSAYYEANPTRFERPARLQAEY 231

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQS 289
           ++FD    E+ +E+++D ++A Y+ N +++  PE R    ++        Q E D     
Sbjct: 232 LVFDRAAVERGVEVADDAVRAFYDGNPQRFGVPEERQARHILLALDQGAEQAEVDRVMAE 291

Query: 290 LKK--------GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
            +           +F  LA+E+    G + +   LG F++  +   +  D++FSL +KG 
Sbjct: 292 ARALVEQLRADPARFAALAKEKSQDPGSAGNGGDLGFFARGVMVG-AFEDAVFSL-QKGV 349

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
               +   FG  I  V++IKPS    F+ V+ +I  ++R  +A  +  E  ++    +  
Sbjct: 350 IGEPVRSDFGVHIVEVTDIKPSSVKPFEAVRAEILAELRAQEAGRRFAELAEQFSNTVY- 408

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH--- 454
               D +    + + +     D+  +D     +A     E+++  +FG D+ + K     
Sbjct: 409 -EQPDSLQPAAEALGLKTATTDWISRDSAPAPLA----DERVISALFG-DEAVQKSRNTE 462

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
            + + +G+ +  ++K   PAR   L+EV   +  +   ++     +++A + +L   + G
Sbjct: 463 AIEIGNGTLVSARVKAFEPARRLPLDEVRERI-VELVRIEQGRVKATRAGEEMLAALRRG 521

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS---- 570
           +                 +  ++           +  VFS   E     P+  G+     
Sbjct: 522 EQ----------PAARWGEARKLQRGAPGLPAAAMQAVFSASAE---TLPVHVGVQSTEG 568

Query: 571 -YVVFKVTNSKVGPVQEKDKFISYLT----QMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            YV++++   +   + + D  ++ +T    Q++      + ++ L+ +Y VT++   +Q
Sbjct: 569 DYVLYRIEAVERAQIGDADPRVAAVTGQYKQLLAGRDFGAFLSELRQRYEVTINPTALQ 627


>gi|157374684|ref|YP_001473284.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
 gi|157317058|gb|ABV36156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
          Length = 621

 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 195/413 (47%), Gaps = 28/413 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  +AK  LV++ + F   G+S  L S S  +   +V  +++  S+   ++
Sbjct: 1   MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEAAAATVNGEEISESALEQAY 59

Query: 61  KQELGMISQKIG--FVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G  F   S   R +  + + +L+ LV+   LDQ   D+GL     ++  
Sbjct: 60  QNERARLEQQLGEMFAALSADERYLSSVKQSVLERLVAEKLLDQTATDLGLRVSDAQIKN 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRP- 174
            I   P F   D  F +D + + L + G     + D     ++R  +V   VG   + P 
Sbjct: 120 AIMTEPAFQ-TDGVFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVASLVGSEFVLPG 178

Query: 175 -SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            +N L D       + R + Y  ++     A A  ++     +++     + +PE   + 
Sbjct: 179 EANYLAD----IQGQTRDIRYHWVDAAPFIAEAVVTDEQAKSYYDANLAQFMSPETLSLE 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEA 286
           YI  +  +    + +S++E +  Y++NK++Y   E R    ++          + +A+  
Sbjct: 235 YIELNAKDMAAGVTVSDEEAKTYYDENKQQYLKAEKRLAAHILVSLGDDDSTAKAKANAI 294

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIH 343
           +  L+ G++F +LA+ + +       G     + P V   +  + ++SL+K G+++ V+ 
Sbjct: 295 YAKLQAGEEFSELAKAESEDTFSGEQGGQLDWFEPGVMEPAFDEVLYSLSK-GEYSAVVK 353

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
            SFGY I  + +++P+   +F++VK  I  Q++  +A ++    Y  L++ LA
Sbjct: 354 TSFGYHIIKLLDVQPAAEAAFEDVKSKILAQLKEKQAVDQ----YFGLQQTLA 402


>gi|195936005|ref|ZP_03081387.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           O157:H7 str. EC4024]
          Length = 608

 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 172/371 (46%), Gaps = 20/371 (5%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           ++ V F++ G+S  L    G++    V  Q++    F N++  E   + Q++G    SE 
Sbjct: 5   IIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLGDQY-SEL 62

Query: 80  ARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
           A + G    L +++L+ L+  A LDQ+  ++ L     +V   I  +P F   D KF + 
Sbjct: 63  AANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQ-VDGKFDNS 121

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFYFENRS 191
            +   L + G+      D Y + L         + G+  ++ +L    D+      + R 
Sbjct: 122 RYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRV 177

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  D    ++ +  S+ 
Sbjct: 178 VREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPV--SDA 235

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
           +LQ+ Y+++++++  P+      +    + EA      L KG  F  LA+E+   +    
Sbjct: 236 DLQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISAR 295

Query: 312 LGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
            G     ++ D ++ D +    L +KG  + VI  S G++I  + +I+P+   S  EV+ 
Sbjct: 296 NGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRD 354

Query: 370 DIANQMRITKA 380
           D+A +++  KA
Sbjct: 355 DVAAKVKHEKA 365


>gi|58697113|ref|ZP_00372552.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225630407|ref|YP_002727198.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia sp. wRi]
 gi|58536595|gb|EAL59930.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592388|gb|ACN95407.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia sp. wRi]
          Length = 599

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 134/625 (21%), Positives = 282/625 (45%), Gaps = 43/625 (6%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           + +  K+ +V+L    +  G+ + L        V  VG++ +    + + ++     IS 
Sbjct: 4   KNFFTKVTVVLLACLLIFVGVGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQIS- 62

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
             G   + E+ + +  D  +L+ L+    L     ++GL      +   I  +  F    
Sbjct: 63  --GSDASREQVKKLKYD--LLNALIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQNDK 118

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-------LLDQA 182
            +F  + F   L    + EKEYI    K+L       MF+  +   N        + +Q 
Sbjct: 119 GEFDKNKFHETLNDLHMTEKEYIAKLEKILPAM----MFMTSLFKDNYPVTFGEKIDEQI 174

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
               ++ R VD + +    V  I +P +  L   +E+ K ++  PEY+   YI  +    
Sbjct: 175 YNSRYQTRVVDIVKITEDAVTNIPEPDDQTLLDLYERNKSHFYYPEYRTAQYISLEQKYF 234

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAE 301
           E +I+IS++E+    E+ + +    + R +  ++F  ++EA+ A ++ ++GK  F Q+ E
Sbjct: 235 EDQIKISDEEVDGIIEQQELR----DQRDIFNIIFSTKEEAETARRAFEEGKTSFEQIVE 290

Query: 302 EQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           E GK+ L +  + + +K+++P+  + + +F+L K G+ + V+  SFG+ I  V +     
Sbjct: 291 EFGKAELEETRVNNITKDFLPE-DMREKVFAL-KVGEVSEVLASSFGWHIIKVESAHQIS 348

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                ++KKDI + +   K+ E+V +   ++   +  G++++EI     +    +  VD 
Sbjct: 349 DEDLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSAIEEILSEYNLPIQTIGPVDA 408

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           +GKD  G  V        L+  +F ++    K +   + D + + V+I + +P + +  E
Sbjct: 409 SGKDQSGNNVGD---SSDLISFIFSREKD-QKGYFKGVGD-AVVSVKIIDIVPPKSQSFE 463

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           E      + W+    +E +  +  ++  E++ + +   D  K  G  L+   Q++R + +
Sbjct: 464 EGRASAVELWQ----SEFIKERMFKIGQEFAVQLREKTDWEKIQGVELVEDQQMHR-NEQ 518

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
           N  F +  + ++F+         PI+  N +   V K  +S  G +   D     +    
Sbjct: 519 NYPFSF--VEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNMLDTGKRVMIS-- 574

Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLI 623
              L + +I+YL+S+Y V V+  ++
Sbjct: 575 ---LKEQLISYLESKYKVEVNHAIL 596


>gi|304322182|ref|YP_003855825.1| putative peptidyl-prolyl cis-trans isomerse D [Parvularcula
           bermudensis HTCC2503]
 gi|303301084|gb|ADM10683.1| putative peptidyl-prolyl cis-trans isomerse D [Parvularcula
           bermudensis HTCC2503]
          Length = 616

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 143/641 (22%), Positives = 277/641 (43%), Gaps = 51/641 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML   RKA++   A + L +  + F   G+     S SG    + VG      ++    +
Sbjct: 1   MLTTFRKATKGVGAWVVLGLAILAFAFVGVP--TLSGSGGQEAIRVGGTVFEVAAVEEEF 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +      +      + E A + GL  +++ +    A + +  + +GL      +   + 
Sbjct: 59  SRRFQRQQRGENAPASREEAVAAGLLDQVVRDYGLRALILEEADTLGLAVSPEMLTTYLR 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT-----KMLSRTDVVGMFVGGMRPS 175
             P F  +D +F  + F   LA   ++  E  D  +       L+R    G+    +   
Sbjct: 119 AQPAFLDEDGEFDSNRFNRVLAANQLSLTELRDRLSLELIEGQLNRAVATGVGAPAILAQ 178

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +L L Q      E R V  +  +    P IA PS   L Q++E+ +  YR  E +  +Y+
Sbjct: 179 SLALRQG-----EERDVSLVTFS---APEIAAPSEENLRQYYEERQGRYRTGEARGFTYL 230

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           L        +I IS+++++  Y+       +PEIR++ Q  F +   A +A  +++ G  
Sbjct: 231 LLTDDTIGAEIAISDEDVRQLYDARVGSLGTPEIRSLTQAQFRDASAARDALAAIEAGAA 290

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F    E  G +L+  +L   ++  I D ++A++ F+ A      P I G FG V+ +++ 
Sbjct: 291 FNDAVEAAGGTLA--TLDGVTESAIADQAVAEAAFAAASPAILGP-IDGIFGTVLVNLTQ 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I P+ T SF+EV++D+   +R     +++ + Y  ++     GT + E ++         
Sbjct: 348 IVPATTPSFEEVREDLEAALRQEDLGQRIDDIYTEIQFAGDDGTPLAEAAQG-------- 399

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQ----LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
             +D +   +  K +AA+   ++    LL  VF    P +    V LP+G   + ++ E 
Sbjct: 400 --LDLSAVTISPKPLAALQDDDRLPPALLAAVF-TTAPGAYFEEVRLPEGGVAFFELGEI 456

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI----GKNLGAS 527
           +P+  +  E V  +V  DW+T +  E +     + V+    +G++F D     G+ +   
Sbjct: 457 VPSSVQPFEAVEEEVATDWRTDQRIEALRG-VREAVMSAIADGQSFADAVAAEGETVSTR 515

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK-VGPVQE 586
            L+ N +N  D+         +  +FS P+  V      +     + KV + + + P   
Sbjct: 516 TLSANVLN--DDLPPAL----VEAIFSRPIGEVLDALGSDRTDLTLAKVEDVRFIAPSTA 569

Query: 587 KDKFISYLTQMMNKDLLDSVI-AYLKSQ---YSVTVHDNLI 623
               ++ L Q +++D+   +  AYL S    Y + V+D L+
Sbjct: 570 PS--LAQLRQTLSRDIATDLFEAYLLSAEQDYGIRVNDGLL 608


>gi|114048051|ref|YP_738601.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
 gi|113889493|gb|ABI43544.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
          Length = 621

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 126/537 (23%), Positives = 237/537 (44%), Gaps = 50/537 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S+  +AK  LV++ + F   G+S  L S S       V   K+  +    ++
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSQS-DVPAAEVNGDKITKAELEQAY 59

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G  F   S   R +  + + +L+ LV+   +DQ    +GL     ++  
Sbjct: 60  QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +D + + L + G   + +       ++R  +    VG      +
Sbjct: 120 AIKSEPAFQ-TDGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVG---TEFV 175

Query: 178 LLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           L  +AK+      + R + Y+V+++    A A  ++  +  +++  +  + +PE   + Y
Sbjct: 176 LPGEAKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKE------ADEAF 287
           +  +  +  K  +++++E QA Y+++K +Y S E R     L+ P   E      A++  
Sbjct: 236 VELNSADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAVAKAKAEDLA 295

Query: 288 QSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           + L  G  F +LA+         EQG  L     G      + D S   ++F+L +KG  
Sbjct: 296 KQLDNGADFAELAKANSEDTLSAEQGGKLDWFEPG------VMDPSFDTALFAL-QKGQH 348

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
           + V+   FG+ I  + +++P  TV F +VK  I  Q++  KA ++    +  L+  LA  
Sbjct: 349 SAVVKTDFGFHIIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQ----FYSLQSKLA-D 403

Query: 399 TSM---DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--- 452
           TS    D ++   K+V +++       +D    +V A   K  ++   F  D  L +   
Sbjct: 404 TSYEVPDTLAETAKVVGVEIKTTPLFSRD----DVPAALNKPDVVKAAFS-DTVLRQGLN 458

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
              + L     + +++KE   A    L EV  D+    K  +  E   +KA +L+ +
Sbjct: 459 SEVLELEPNHVVVIRMKEHHDAGTMPLAEVKADISDRLKQDQANEAARAKAQELMTQ 515


>gi|58040710|ref|YP_192674.1| peptidyl-prolyl cis-trans isomerase [Gluconobacter oxydans 621H]
 gi|58003124|gb|AAW62018.1| Peptidyl-prolyl cis-trans isomerase [Gluconobacter oxydans 621H]
          Length = 645

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 182/399 (45%), Gaps = 8/399 (2%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDAL--FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
           +W  +   +++F+ F+ WG+ D       + S+ VV VG + +    F  +   +L  ++
Sbjct: 12  SWAGRAAALLIFLAFIGWGVGDVYSNMGTASSNEVVRVGDRSITPDDFSRALSAQLPEVA 71

Query: 69  QKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           ++IG    S+  +     + ++ L NLV            G+      V  E+   P FH
Sbjct: 72  RRIGLADPSKLPKGEVEQIARQTLQNLVIQNETQLAAARAGMMVPDDLVRQEVFAIPAFH 131

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTK-MLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
               +F   VF  RL R G++E + +    + + SR  + GM    + PS+L  D+   F
Sbjct: 132 NAAGQFDRSVFNDRLTRIGLSEGKLLQAIREDIASRGLLQGMGQSVVAPSSLT-DRMLSF 190

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
               R  D + +        A P++  L ++++ +   +R  EY+    ++       K 
Sbjct: 191 DASQRIFDLVQIPFASGVVAAAPTDDQLHRFYDNHPQMFRTTEYRHAKMVVMTSDSVAKT 250

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           IE+ +D L   Y+     +  PE RT++ L F +Q +AD A  + K G  +  + +++  
Sbjct: 251 IEVPDDVLHRLYDFQARTFDMPETRTIQVLTFTDQAKADAAATAWKSGTSWDDI-QKKFP 309

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
             + +SL S  +  IP+  LA + F+        P   G  G+V+ +++ I      +F+
Sbjct: 310 EAAAVSLPSVRQSDIPNPELAKAAFAAPSDRISGPEKTG-MGWVVFNITAITAPHKTTFE 368

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
           + K  +  Q++  +A E ++   K+ ++ +A  +++++I
Sbjct: 369 QAKDGLKTQVQTQEAGEALQARQKQFQDAVAGSSTLEQI 407


>gi|271499601|ref|YP_003332626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech586]
 gi|270343156|gb|ACZ75921.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech586]
          Length = 626

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 185/415 (44%), Gaps = 28/415 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V K+ L ++   F++ G+ D L   SG      V  Q++  S      
Sbjct: 1   MMDNLRAAANNVVLKVILALIIGSFVLTGVGDYLIRGSGD-YAAKVNGQEITRSQLEQGV 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G     + +       L K++L  L+    + Q+   +GL     ++  
Sbjct: 60  QNERNRQQEMLGDNFSALAANEGYMQQLRKQVLSQLIDETLVVQYAHTLGLNISDEQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +N+F +D +++++ + G+      D Y + L +  +    + G+  ++ 
Sbjct: 120 AIFSVPEFQ-TNNRFDNDKYLAQVRQMGLTP----DAYAQFLRKQLLTQQLIRGLGSTDF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           +L    D       ++R++    L+          S+  +  ++++ K  Y APE  ++S
Sbjct: 175 VLQQELDNLVAMAAQDRTIRTATLDLGVRARSQTVSDDEVKNFYDQNKSRYLAPEQFKVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI+ D      K ++ N+++ A YE++K ++  PE +    +    + +A      LKKG
Sbjct: 235 YIMLDAASIMDKTKVDNNDIAAYYEQHKGEFTQPERKKYSVIQLKTEADAKVVLDQLKKG 294

Query: 294 KKFIQLAEEQGKSL-SDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350
             F  LA+E+   + S  + G     ++ D S  D I    L +KG  + VI  S GY+I
Sbjct: 295 ADFAALAKEKSTDIVSRRNGGDLG--WMDDGSTVDEIKQAGLKQKGQLSDVIKSSVGYLI 352

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
             + +I+     +  EV+ D+A         EKVK + K L+ F AL   + E +
Sbjct: 353 IRLDDIQAQRVKALDEVRADLA---------EKVKRE-KSLDAFYALQQKVSEAA 397


>gi|259909248|ref|YP_002649604.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Erwinia
           pyrifoliae Ep1/96]
 gi|224964870|emb|CAX56392.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia pyrifoliae Ep1/96]
          Length = 622

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 117/535 (21%), Positives = 236/535 (44%), Gaps = 43/535 (8%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++ +R AS   V K+ L ++ + F++ G+   L   SG      V  Q++  +    ++ 
Sbjct: 1   MDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSGD-YAAKVNGQEIGRAQLERAFS 59

Query: 62  QELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            E     Q +G    V+         + ++ L  L+    L Q+ ++IGL     ++   
Sbjct: 60  SERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQA 119

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I   P F   D KF +  ++S +   G    +Y +   K L+   ++G   G    ++ +
Sbjct: 120 IFTQPAFQ-TDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTG----TDFV 174

Query: 179 L----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           L    D       + R V  + +N   + A  + +   +  ++++++ +  +PE  R+SY
Sbjct: 175 LGNETDSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSPEQFRVSY 234

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           I  D     + +  S  ++Q+ Y+++++ Y  P+      +    + EA     +L KG 
Sbjct: 235 IKMDASAMLQPV--SESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALNKGG 292

Query: 295 KFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            F +LA+E  KS   IS      +G    E  PD  L ++  +L +KG  + VI  S G+
Sbjct: 293 SFAKLAKE--KSADPISARNGGDMGWLEPETTPD-ELKNA--ALKEKGQLSDVITSSVGF 347

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISR 406
           ++A + + +P    +  EV  +IA +++     EK    + +L++ ++   S D   ++ 
Sbjct: 348 IVARLDDTQPEKVKALSEVHDEIARKLK----QEKAVVAFYKLQQKVSDAASNDNESLAS 403

Query: 407 REKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
            E++  +     D+  +D     +K K V    +   LL    G++     +  V   DG
Sbjct: 404 AEQVAGVKAVDTDWFDRDNLPAELKFKAVQDAIFNGALL----GENGAPGSNSEVITVDG 459

Query: 462 SYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
              +V +I+E  P   + L++V   +    K  K  ++  ++A++L+ E  K GK
Sbjct: 460 DRAFVLRIREHKPEAVKALKDVAAQITDTLKQQKGLQQAKAQADKLLAEL-KAGK 513


>gi|146310569|ref|YP_001175643.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter sp.
           638]
 gi|145317445|gb|ABP59592.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter sp.
           638]
          Length = 624

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 136/652 (20%), Positives = 282/652 (43%), Gaps = 56/652 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59
           M++ +R A+ + V KI   ++ + F++ G+S  L  + GSS     V  Q++    F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIILSFILTGVSGYL--IGGSSNYAAEVNGQEISRGQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L ++ ++ L+  A LDQ+ + +GL     +V
Sbjct: 59  FAGERNRMQQQLGDQF-SELAANEGYMKTLRQQTVNRLIDEALLDQYAKRLGLGISDDQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +  F   + KF +  + + + + G+   +Y       L+   ++   VG    +
Sbjct: 118 KKAIFSTQAFQ-TNGKFDNTRYNAIVNQMGMTADQYAQALRNQLTSQQLINAVVG----T 172

Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           + +L    D+      + R V    ++   + A    S+  +  ++E+ K+N+ APE  R
Sbjct: 173 DFMLKGETDELAALVSQQRVVRAATIDVNALAAKQQASDEEVKAYYEQNKNNFTAPEQFR 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D     +    S+ ++Q+ Y+++++++   +      +    + +A      L 
Sbjct: 233 VSYIKLDAATMPETA--SDSDIQSYYDQHQDQFTQAQRNRYSVIQTKTEADAKAVVDELA 290

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYV 349
           KG  F  +A+ +   +     G     ++ D +  + +    L +KG  + VI  S G++
Sbjct: 291 KGADFATVAKAKSTDIISAKNGG-DMGWLEDATTPEELKNAGLKEKGQLSGVIKSSVGFL 349

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRR 407
           +  + +I+P+ T    EV+ DIA +++     EK  + Y  L++ ++   S D   ++  
Sbjct: 350 VVRLDDIQPAKTKPLAEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESLAGA 405

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV 466
           E+   +   +  + G D   +E+   P  + +    + G +     +  +   DG   +V
Sbjct: 406 EQAAGVKAVVTGWFGHDNLPEELNFKPVSDAIFNGGLLGDNGTPGNNSDIITVDGDRAFV 465

Query: 467 -QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
            ++ E      + LE+V   +    K  K  ++    A +L+ E  K GK    + K  G
Sbjct: 466 LRVTEHKAEAIKPLEDVKDQIATLVKHTKAEQQAKLDAEKLLAEL-KAGKGDAAL-KAAG 523

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY----------VVFK 575
            S      ++R        G D ISQ   G        P ++  SY          VV  
Sbjct: 524 LSFGEAKTLSRT-------GQDPISQAAFGL-----SLPAKDKPSYGTASDMQGNIVVLA 571

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   K G  P ++K   +  +TQ   +   +++++ L+ +  + + D + Q+
Sbjct: 572 LDEVKAGTMPDEQKKAMVQGITQNNAQIAFEALMSNLRKEAKIKLGDIITQQ 623


>gi|328473322|gb|EGF44170.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           10329]
          Length = 619

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 183/405 (45%), Gaps = 20/405 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   L + S +S    VG  ++P   F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSNNSAA-KVGNTEIPRGEFEMAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   + +F  +++ + L R G +   + ++  + L R       +  ++ S  
Sbjct: 120 MILEMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVRE----QLLTALQSSEF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            L        + + + R +  + ++        + ++  +  +++   DN+  PE  ++S
Sbjct: 175 TLPGEVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLK 291
           Y+       +K+I++++++++  Y+++ +KY S E R V  ++     E  A      L 
Sbjct: 235 YVELSAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELN 294

Query: 292 KGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G  F  +A+E+    G + +   LG   ++ + D +  ++ F+L   GD + ++   FG
Sbjct: 295 SGADFAAVAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDMSGLVKSDFG 353

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           Y I  +  +K +    F EV  +I  ++   KA ++  E    LE
Sbjct: 354 YHIIKLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELE 398


>gi|260366277|ref|ZP_05778733.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           K5030]
 gi|308114046|gb|EFO51586.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           K5030]
          Length = 555

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 183/405 (45%), Gaps = 20/405 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   L + S +S    VG  ++P   F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSNNSAA-KVGNTEIPRGEFEMAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   + +F  +++ + L R G +   + ++  + L R       +  ++ S  
Sbjct: 120 MILEMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVRE----QLLTALQSSEF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            L        + + + R +  + ++        + ++  +  +++   DN+  PE  ++S
Sbjct: 175 TLPGEVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLK 291
           Y+       +K+I++++++++  Y+++ +KY S E R V  ++     E  A      L 
Sbjct: 235 YVELSAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELN 294

Query: 292 KGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G  F  +A+E+    G + +   LG   ++ + D +  ++ F+L   GD + ++   FG
Sbjct: 295 AGADFAAVAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDMSGLVKSDFG 353

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           Y I  +  +K +    F EV  +I  ++   KA ++  E    LE
Sbjct: 354 YHIIKLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELE 398


>gi|28897695|ref|NP_797300.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260878350|ref|ZP_05890705.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           AN-5034]
 gi|260898294|ref|ZP_05906790.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           Peru-466]
 gi|260901515|ref|ZP_05909910.1| SurA N-terminal domain protein [Vibrio parahaemolyticus AQ4037]
 gi|28805908|dbj|BAC59184.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088424|gb|EFO38119.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           Peru-466]
 gi|308092760|gb|EFO42455.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           AN-5034]
 gi|308110873|gb|EFO48413.1| SurA N-terminal domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 619

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 183/405 (45%), Gaps = 20/405 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   L + S +S    VG  ++P   F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSNNSAA-KVGNTEIPRGEFEMAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   + +F  +++ + L R G +   + ++  + L R       +  ++ S  
Sbjct: 120 MILEMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVRE----QLLTALQSSEF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            L        + + + R +  + ++        + ++  +  +++   DN+  PE  ++S
Sbjct: 175 TLPGEVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLK 291
           Y+       +K+I++++++++  Y+++ +KY S E R V  ++     E  A      L 
Sbjct: 235 YVELSAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELN 294

Query: 292 KGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G  F  +A+E+    G + +   LG   ++ + D +  ++ F+L   GD + ++   FG
Sbjct: 295 AGADFAAVAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDMSGLVKSDFG 353

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           Y I  +  +K +    F EV  +I  ++   KA ++  E    LE
Sbjct: 354 YHIIKLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELE 398


>gi|218888106|ref|YP_002437427.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218759060|gb|ACL09959.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 630

 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 121/557 (21%), Positives = 236/557 (42%), Gaps = 55/557 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE+IR  +++W  KI   ++ + F+ WG+     S SG+  + +V ++ +    F   +
Sbjct: 1   MLELIRAHAQSWGVKIAFGIIILVFVFWGVGSMHNSSSGA--LATVNKKPILIQEFGREY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +  +   +  +E  + +GL +++L  +++   L      IGL      +   I 
Sbjct: 59  ERQVETLRSRYPGI-TAEDMKQMGLKRQVLQAMITERLLADEAARIGLSVSPVELRRSIE 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR-----PS 175
               F   D +F  +V+ S L  +  +   + D       R D   M +  +R     P+
Sbjct: 118 SITAFRNGDGRFDAEVYRSVLKGQQTSPGRFEDGI-----RRD---MLLQKLRDRVAAPA 169

Query: 176 NLLLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
           ++  ++A+  +    E R+++Y++           P++  + + + +  D +R P+   +
Sbjct: 170 SVTDEEARALFDYGRERRTIEYVLFPLEDYVLKVTPTDEQIAERYNENMDAWRNPQRISL 229

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQK---------- 281
             +          +EI    + A Y  N E YF  PE      ++F  Q+          
Sbjct: 230 DAVTLTPASLATSVEIPESAVAAFYADNAETYFVVPERVHARHILFMAQEGASKDEDAAA 289

Query: 282 --EADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAK 334
             +A++    LKKGK F  LA    +++G       LG F+K + +P     ++ F+L K
Sbjct: 290 RAKAEDVIAQLKKGKDFASLAAKLSDDKGSGAQGGDLGWFTKGQMVP--PFEEAAFAL-K 346

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G+ +  +  +FG+ +  +   +   T +  EV+ +I  ++   KASE++ E      E 
Sbjct: 347 PGEISAPVRSAFGWHVIKMEAHETQRTRALDEVRGEIRQRLGEEKASERMHEALDTALEM 406

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
              G S+D+I++  K+      L   A   V      A+  K Q +   F        D 
Sbjct: 407 AGAGKSIDDIAKALKLEHKPTGLFSRADAGV------AVGLKGQSVGTAFSTPAGTVIDT 460

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK-------TVKTAEEVSSK-ANQL 506
            + + +G YM   + ES P     LE+V  +V    +        VK A+E  +K A+ +
Sbjct: 461 PLEV-EGGYMIAAVLESQPESVTPLEKVKEEVAAQVRRIEGAKLAVKAAQEAGAKLADGV 519

Query: 507 VLEYSKEGKNFRDIGKN 523
             E +   K     G+N
Sbjct: 520 PAELAARVKTAEPFGRN 536


>gi|293392541|ref|ZP_06636861.1| peptidyl-prolyl cis-trans isomerase D [Serratia odorifera DSM 4582]
 gi|291424943|gb|EFE98152.1| peptidyl-prolyl cis-trans isomerase D [Serratia odorifera DSM 4582]
          Length = 627

 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 175/387 (45%), Gaps = 12/387 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+ + L   SG      V  Q +  +    ++
Sbjct: 1   MMDNLRAAANNVVLKIILALIILSFVLTGVGNYLIGGSGD-YAAKVNGQVIERAQLEQAF 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G     +         L ++ L  L+    LDQ+ + +GL     +V  
Sbjct: 60  QSERSRMQQQLGEQFSALAGNEGYMQQLRQQALSQLIDNMLLDQYAKKLGLSISDDQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRPS 175
            I ++P F   + +F +  ++  + R G +   Y     + L    V+  F   G + PS
Sbjct: 120 AIRKAPYFQ-TNGQFDNAKYLDLITRMGYSADNYAQSMRQQLLNQQVIQAFGNSGFVLPS 178

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
               D       + R V    ++   + A  + S+  L +++ + K+++ APE   +SYI
Sbjct: 179 ES--DAMAALVLQERDVRLATIDLNALQAKQNVSDDELKEYYNQNKNSFIAPEQVEVSYI 236

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
             D    + KI +++ ++ A Y+++K  Y  PE +    +    + EA      L KG  
Sbjct: 237 PMDAAAMQSKITVNDADISAYYDQHKSSYGQPERKNYSVIQLKTEAEAKAVLDELNKGAD 296

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHV 353
           F  LA+E+   +     G       PD + AD +    L++KG  + V+  S GY+I  +
Sbjct: 297 FATLAKEKSTDIISKRNGGELGWLEPDTT-ADELKEAKLSEKGQLSGVVKSSVGYLIVRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKA 380
           ++++P       EV+  IA++++  KA
Sbjct: 356 NDVEPEKLKPLSEVRDSIADKVKQEKA 382


>gi|269961041|ref|ZP_06175410.1| peptidyl-prolyl cis-trans isomerse D [Vibrio harveyi 1DA3]
 gi|269834260|gb|EEZ88350.1| peptidyl-prolyl cis-trans isomerse D [Vibrio harveyi 1DA3]
          Length = 619

 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/421 (21%), Positives = 193/421 (45%), Gaps = 23/421 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           M++ +R+   +   KI L ++ + F+  G+    + V G++ +   VG  ++    F  +
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGS--YIVGGNNNSAAKVGNTEIARGEFEMA 58

Query: 60  WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V 
Sbjct: 59  YQNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVR 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   + +F  D++ + L R G +   + ++  + L R       +  ++ S 
Sbjct: 119 SMILDMPQFQS-NGQFDQDIYQASLRRAGFSPDSFAEYMRRELVRE----QLLNALQTSE 173

Query: 177 LLLD---QAK-RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             L    QA+ + + + R V  I ++        D ++  +  +++   D +  PE  ++
Sbjct: 174 FTLPGEVQAEGKLFTQTRDVRTITIDLNEFAKKVDLTDEEIQDYYKANPDMFTRPEQVKV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSL 290
           +YI     E +K++++S+++++  Y+++ +KY + E R V  ++     E  A      L
Sbjct: 234 AYIELSAEELKKQVQVSDEDVKKYYDEHLDKYSTEEQRRVAHILVEGDDEAKAQAILDEL 293

Query: 291 KKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F  +A+E+    G + +   LG   ++ + D +  ++ F+L   GD T ++   F
Sbjct: 294 NAGADFATVAKEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDMTGLVKSDF 352

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEIS 405
           GY I  +  +K +    + EV  +I  +M   KA ++  E    LE+       S+D+ S
Sbjct: 353 GYHIIKLEELKGAVAKPYSEVAAEIKQEMIDQKAVDQFYELQNELEKVAFEFPDSLDDAS 412

Query: 406 R 406
           +
Sbjct: 413 K 413


>gi|126735661|ref|ZP_01751406.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp.
           CCS2]
 gi|126714848|gb|EBA11714.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp.
           CCS2]
          Length = 612

 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 182/393 (46%), Gaps = 12/393 (3%)

Query: 21  LFVPFLIWGLSDALFSVSGSS----TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
           + V  ++ GL  A F   G S     + +VG + V   S+  +  +++  +S + G  ++
Sbjct: 13  IIVGVILLGL--AGFGTGGLSGNIRNIGTVGDKDVTVVSYQRALNEQIRALSAQFGQQIS 70

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
            ++A++ G+D+  L  +V   TLD    ++G+     RV+  +   P F G    F+ + 
Sbjct: 71  FQQAQAFGIDQVALSQVVLLRTLDNEASELGISVGDERVFDRLQTIPSFQGA-GGFNRET 129

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           +   L + G    E+ +   +  +RT + G  V G+   +   D   +F  E RS+ + V
Sbjct: 130 YRLSLQQSGQTAAEFENGIREETARTLLQGAVVSGVPAPDAYADALVQFISETRSITWAV 189

Query: 197 LNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
           ++   + A +   + A   ++++     +  PE + I+Y+    +     + +++  ++ 
Sbjct: 190 VDAGDLTAPVPGATEAAQQEYYDANPAEFTLPESRDITYVWLTPNMIIDDMVVADAAVEQ 249

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGS 314
            Y +   ++  PE R VE+LV+ +Q  A +A   +  G+  F  L  E+G  L+DI LG 
Sbjct: 250 LYNQRIAEFVQPERRLVERLVYLSQDRAADAMARVNAGEATFEDLVAERGLRLTDIDLGD 309

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
            S++ +   S  +++F+ A+ G      +   G  +  ++ +  +  +  +E    + ++
Sbjct: 310 VSQDDLG--SAGEAVFA-AETGTVVGPFNSPLGPALFRMNAVLAAQEIPLEEAAPRLRDE 366

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           +    A E +      + + LA G +M +++ R
Sbjct: 367 LATDAAREFINSSADPIIDLLAGGATMADLAER 399


>gi|74317691|ref|YP_315431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057186|gb|AAZ97626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 647

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 136/660 (20%), Positives = 270/660 (40%), Gaps = 67/660 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           +LE IRK ++ W+AK+ L ++ V F ++G+   +        V  VG+  +         
Sbjct: 15  VLEAIRKHAKGWLAKVILGLIAVTFALFGIDSYMSGDRSGGVVAEVGKVGITREELTREI 74

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   + + +G   +     +    K++LD+L+    L    E +   A    V   I 
Sbjct: 75  QAQSDRLRESLGPAFDPSMTETAAFRKQVLDSLIERKALLLEAEKLKFLAPDSYVAAAIG 134

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F  +D KFS   + + L + G     + +   +      V          +   L+
Sbjct: 135 QIPAFQ-QDGKFSPQRYEAILRQNGRTPASFENELRQAFMLEGVTSPVTLAAFNATTTLE 193

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           Q  R   + R + ++ L    V ++AD    + A + + +   K  +  PE  R  Y++ 
Sbjct: 194 QVARLVAQQREISWVDL---PVASVADEVKVTPADVERHYAANKPAFTEPEQIRAEYVVL 250

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286
           D       I +S   ++  Y  N  ++  PE R+   ++    K++D A           
Sbjct: 251 DAAALVAGISVSEQAVRDYYAANAAQFGQPEQRSASHILIAADKDSDAATRAKAKAKATA 310

Query: 287 -FQSLKK-GKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
             ++L+K  ++F +LA    ++ G +  D SLGSF +  +      D++F++  K    P
Sbjct: 311 LMETLRKQPERFGELARSTSQDPGSAEQDGSLGSFGRGMMVK-PFEDAVFAMKPKEIRGP 369

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
           V    FGY I  + +I+P       EV+  I +++R     ++ ++ +  L +  +    
Sbjct: 370 V-ESDFGYHIIRLDSIEPGKAAPLAEVRAAIVDELR----KQQAQKTFADLADNFSNLVY 424

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALP 459
            +  S +    +  L +      + K    A  P+    L   +F  +   S+ +T A+ 
Sbjct: 425 ENAESLQPAAAAAKLTVQQSGWMNAKA---APPPFDNPALSAALFSPESIKSRQNTEAIE 481

Query: 460 --DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV--LEYSKEG- 514
              G+ +  ++ E   AR R L EV  ++++  +  +TA+ ++ KA   +  L+  KE  
Sbjct: 482 IKPGTLVAARVVEHRAARLRPLSEVSAEIERTMRAEQTAQLLAKKAEATIKSLQDGKESG 541

Query: 515 ---KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIENG 568
                F+ +G+  GASL                   G+  VF    E       F   +G
Sbjct: 542 LDWTAFQVVGRQPGASLDAA----------------GVKAVFRANAEKTPAYTGFARPDG 585

Query: 569 LSYVVFKVTN----SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            SY + +VT     + + P+   +   S + Q   +  + ++IA + + + V +  N I+
Sbjct: 586 -SYRIVRVTRVVEPASLDPML-MESIGSGVMQAQQRADMKALIALVTAGHKVKIQPNAIE 643


>gi|42520635|ref|NP_966550.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410374|gb|AAS14484.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 602

 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 134/627 (21%), Positives = 278/627 (44%), Gaps = 44/627 (7%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           + +  K+ +V+L    +  G+ + L        V  VG++ +    + + ++     IS 
Sbjct: 4   KNFFTKVTVVLLACLLIFMGIGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQIS- 62

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
             G   + E+ + +  D  +L+ L+    L     ++GL      +   I  +  F    
Sbjct: 63  --GSDASREQVKKLKYD--LLNGLIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQNDK 118

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-------LLDQA 182
            +F  + F   L    + EKEYI    K+L       MF+  +   N        + +Q 
Sbjct: 119 GEFDKNKFYETLNDLHMTEKEYIAKLEKVLPAM----MFMTSLFKDNYPVTFGEKIDEQI 174

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
            +  ++ R VD + +    V  I +P +  L   +E+ K ++  PEY+   YI       
Sbjct: 175 YKSRYQTRVVDIVKITEDAVTNIPEPDDQALLDLYERNKSHFYYPEYRTAQYISLGQKYF 234

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAE 301
           E +I+IS++E+    E+ + K      R +   +F  ++EA+ A ++ ++GK  F Q+ E
Sbjct: 235 EDQIKISDEEVDGIIEQQELK----NQRDIFNAIFSTKEEAETARRAFEEGKTSFEQIVE 290

Query: 302 EQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           E GK+ L +  + + +K+++P+  + + +F+L K G+ + V+  SFG+ I  V +     
Sbjct: 291 EFGKAKLEETRVNNITKDFLPE-DVREKVFAL-KVGEVSEVLASSFGWHIVKVESAHQIS 348

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                ++KKDI + +   K+ E+V +   ++   +  G+ ++EI     +    +  VD 
Sbjct: 349 DEDLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSEIEEILSEYNLPIQTIGPVDA 408

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           +GKD  G  V        L+  +F ++    K +   + D + + V+I +  P + +  E
Sbjct: 409 SGKDQSGNNVGD---SGDLISFIFSREKD-QKGYFKGVGD-AVVSVKIVDIFPPKLQSFE 463

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI--NRMD 538
           E      + W++    E +     ++ ++  ++     D+ +  G  L+   Q+  N++D
Sbjct: 464 EGKALAVELWRSEFIKERMFKFGQEVAVQLREK----TDLEEIQGVELVKGQQMHRNKVD 519

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596
            +N  F +  + ++F+         PI+  N +   V K  +S  G +   D     +  
Sbjct: 520 QQNYPFSF--VEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNTLDTGKRVMIS 577

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLI 623
                L + +I+YL+S+Y V V+  ++
Sbjct: 578 -----LKEQLISYLESKYKVEVNHAIL 599


>gi|121604540|ref|YP_981869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
 gi|120593509|gb|ABM36948.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
          Length = 645

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 128/529 (24%), Positives = 230/529 (43%), Gaps = 46/529 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M + IRK ++  +A +FL  L VP F++ G++    S  G   V  V   ++    +   
Sbjct: 1   MFDFIRKHTKWTMALLFL--LIVPSFILVGMNSNPSSEKGG-VVAKVDGTEITQPEWDRE 57

Query: 60  WKQELGMISQKI----GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +E+  +   +      +++S  AR   L++ + D +V+ A      E + L      +
Sbjct: 58  HLKEVDRLRASMPTLDAKLLDSPEARYATLERMVRDRVVAVAA-----EKLKLSTSDQHL 112

Query: 116 WGEIARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             E+  SP        D     D +   L  +G++ + +  +    LSR  V+    G  
Sbjct: 113 ARELQNSPEIAALRRADGSLDMDRYRQLLGTQGMSPEMFEANVRTDLSRRQVLAGVSGSG 172

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             SN   D A   YFE R +     N     A   P++A L Q+++  +  ++APE   I
Sbjct: 173 FASNSAADMALNAYFEKREIQLARFNAADYAAKLTPTDADLEQYYKANEKLFQAPEQASI 232

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR-------TVEQLVFPNQKE--- 282
            Y+L D+   +K I ++  +L+  YE+N  +    E R       T  +   P ++E   
Sbjct: 233 EYVLLDLEALKKGIAVNEADLKTYYEQNARQLSGTEERRASHILITASKTASPEEREKAK 292

Query: 283 --ADEAFQSLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
             A+E   ++KK  + F  +A    ++ G + +   L  F++  +   S  D+ FS+  K
Sbjct: 293 TKAEELLATVKKSPENFADVARKNSQDPGSATNGGDLDFFARGAMVK-SFEDAAFSM-NK 350

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           GD + V+   FGY I  +++IK     +F+E++  +  +++  +A +K  E  +      
Sbjct: 351 GDISEVVASDFGYHIIKLTDIKAPKQRTFEEMRPQLEAELQKQQAQKKFSEAAE------ 404

Query: 396 ALGTSMDEISRREKIVSIDLPL-VDFAGKDVK--GKEVAAIPYKEQLLFRVFGKDDPLSK 452
           A    + E S   K V+  L L V  AG   +     V       + L  +F  D    K
Sbjct: 405 AFSNGVYEQSDSLKPVAERLKLEVKTAGNVGRQPASGVTGALANPKFLTALFSPDSIEKK 464

Query: 453 DHTVALPDGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
            +T A+  G    V  +I +  PAR + L +V  +V++ W   ++AEE 
Sbjct: 465 RNTEAIEVGPSQLVSGRIVQYTPARTQPLADVKDNVRQRWLAQRSAEEA 513


>gi|288941155|ref|YP_003443395.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium
           vinosum DSM 180]
 gi|288896527|gb|ADC62363.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium
           vinosum DSM 180]
          Length = 645

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/413 (21%), Positives = 175/413 (42%), Gaps = 32/413 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR+ ++ W+A   ++++ +PF +WG+   L  V G     +V   ++P        
Sbjct: 1   MLQTIRERAQGWIAWAIVILISIPFALWGIQSYL-GVGGEPIAATVNGVEIPARELDRRV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++    + +++G   +        L  ++L+ L+  A L   +  +GL      V  +I 
Sbjct: 60  QETRFELRERLGAAYDPAAFDDQRLRAEVLETLIQEALLMDVVGRLGLRVSDQEVQMQIL 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F  D +   L  +G+    Y     + +S T ++         +   LD
Sbjct: 120 SDPAFV-SEGRFDKDTYERLLRFQGLTPAMYEAQLRQKMSATQLIRAVSSSELATRAELD 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             KR   + R + Y+ L             A +T +++  +  +++PE  R+ Y++ D  
Sbjct: 179 TYKRLMGQKREISYLRLPLAEHRTDEPIDEARITAYYDSNRARFQSPEQVRLDYLVLDTD 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------------------N 279
               K+E+S ++L+  Y  ++ ++  PE R V  L+                        
Sbjct: 239 ALSSKVEVSEEDLRQLYASDQARFAQPERREVRHLLLKVDADADEAAARAVLDEIQAIRA 298

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-SKEYIPDVSLADSIFSLAKKGDF 338
           + +A E+F+ L K      L+++ G +    SLG   S   +P  +   + F+L K G+ 
Sbjct: 299 RIQAGESFEELAK-----TLSQDPGSAAKGGSLGVIESGIMVP--AFDQAAFAL-KTGEL 350

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +  +   FGY +  V  I PS    F++V++ +  ++   +A     E  +RL
Sbjct: 351 SEPVRTPFGYHLIEVVQILPSKAKPFEDVREPLRAELAKQRAEGLFYELAERL 403


>gi|224582290|ref|YP_002636088.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224466817|gb|ACN44647.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 623

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 141/650 (21%), Positives = 290/650 (44%), Gaps = 52/650 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q++  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P F   D KF ++ + + + + G+      D Y + L         + G+  +
Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172

Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           + +L    D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R
Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D    +  +  S+ ++QA Y+++ +++  PE      +    + +A     +L 
Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290

Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           KG+ F  LA+E+   +     G           +P++  A     L +KG  + VI  S 
Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404
           G+++A + +I+P+      EV+ DIA +++     EK  + Y  L++ ++   S D   +
Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463
           +  E++  +      +  +D   +E+   P  + +    + G++     +  +   DG  
Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462

Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V++ E  P   + L EV   V    K  K  ++    A +L++E  K GK    + K
Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577
             G S      +NR          D +SQ     S P +    + + N +  + V+    
Sbjct: 521 AAGLSFGEPKTLNRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573

Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|117618139|ref|YP_856546.1| peptidylprolyl cis-trans isomerase D [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559546|gb|ABK36494.1| peptidylprolyl cis-trans isomerase D [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 636

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 112/538 (20%), Positives = 233/538 (43%), Gaps = 34/538 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ ++  VAK+ L ++ + F + G+   L +    +   +V    +  ++  N++
Sbjct: 1   MLDKLREGAQGKVAKVILGLIILSFALAGVGSYL-NGPARTAPATVNGNDISSAALENAY 59

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           + E   +  ++G        N +  +     + +LD L+  A  D    ++GL     ++
Sbjct: 60  RNERARMESQMGESFSQLAANPDYMKQ--FRRGVLDRLIDQALFDSKARELGLRVSDEQI 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I   P F  +D KF++D ++  + R G+  + + D   + + R  ++G  +G     
Sbjct: 118 KQAIVAMPEF-AEDGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMGALLGTEFAL 176

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
               +Q  + Y + R +  + L           S+  + Q+++    ++   E  ++ Y+
Sbjct: 177 KGEAEQLDKLYNQTRDLRLVRLAASAYLGDVKVSDEEVEQYYKANSSHFMNDEQVKVDYL 236

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQ 288
           L D     K +++S  + Q  Y+++++ +   E R V  ++ P        +++A+    
Sbjct: 237 LLDAATLGKDVKVSEQDAQDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEQKAEAVLT 296

Query: 289 SLKKGKKFIQLAE-EQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
             K G  F  LA+ +   + S    G     ++ + D +   + F+LAK GD + V+   
Sbjct: 297 KAKAGDDFAALAKADSSDTFSAKKGGELDWFEKGVMDPAFEKAAFALAKAGDLSTVVKSP 356

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA-----SEKVKEDYKRLEEFLALGTS 400
           FG+ +  +  ++P+ T  F +VK +  ++++  KA     +E+ K      E   +L  +
Sbjct: 357 FGFHVIKLLGVEPAQTKPFADVKAETISRLQADKAKELFFAEQQKMADSSFENPDSLDLT 416

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
            D +    K+ S        A   +   +V +  + EQL      +DD  + D  + L D
Sbjct: 417 ADTMGL--KVQSTGYFSQADAPAPLNDPKVLSAAFSEQL------RDDNTNSD-VIELAD 467

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
           G  + + I    P   + L EV   V    K  K +E    KA Q +L+  K G+N +
Sbjct: 468 GKALVMHITGHQPKAAKPLAEVKEQVIAAIKHDKASEVARGKA-QGLLDKLKAGENIQ 524


>gi|113970826|ref|YP_734619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
 gi|113885510|gb|ABI39562.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
          Length = 621

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 125/537 (23%), Positives = 233/537 (43%), Gaps = 50/537 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S+  +AK  LV++ + F   G+S  L S S       V   K+  +    ++
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSQS-DVPAAEVNGDKITKAELEQAY 59

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G  F   S   R +  + + +L+ LV+   +DQ    +GL     ++  
Sbjct: 60  QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +D + + L + G   + +       ++R  +    VG      +
Sbjct: 120 AIKSEPAFQ-TDGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVG---TEFV 175

Query: 178 LLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           L  +AK+      + R + Y+V+++    A A  ++  +  +++  +  + +PE   + Y
Sbjct: 176 LPGEAKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPN-------------- 279
           +  +  +  K  +++++E QA Y+++K +Y S E R     L+ P               
Sbjct: 236 VELNSADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAAAKAKAEDLA 295

Query: 280 -QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
            Q +    F  L K      L+ EQG  L     G      + D S   ++F+L KKG+ 
Sbjct: 296 KQLDNGADFAELAKANSEDTLSAEQGGKLDWFEPG------VMDPSFDTALFAL-KKGEH 348

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
           + V+   FG+ I  + +++P  TV F +VK  I  Q++  KA ++    +  L+  LA  
Sbjct: 349 SAVVKTDFGFHIIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQ----FYSLQSKLA-D 403

Query: 399 TSM---DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--- 452
           TS    D ++   K+V +++       +D    +V A   K  ++   F  D  L +   
Sbjct: 404 TSYEVPDTLAETAKVVGVEIKTTPLFSRD----DVPAALNKPDVVKAAFS-DTVLRQGLN 458

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
              + L     + +++KE   A    L EV  D+    K  +  E   +KA +L+ +
Sbjct: 459 SEVLELEPNHVVVIRMKEHHDAGTMPLAEVKADISDRLKQDQANEAARAKAQELMTQ 515


>gi|149184601|ref|ZP_01862919.1| peptidyl-prolyl isomerase [Erythrobacter sp. SD-21]
 gi|148831921|gb|EDL50354.1| peptidyl-prolyl isomerase [Erythrobacter sp. SD-21]
          Length = 645

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 117/509 (22%), Positives = 209/509 (41%), Gaps = 16/509 (3%)

Query: 13  VAKIFLVVLFVPFLIWGLSD--ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
           +A  FL ++   F    +S+  A   V+G  +V  VG  K+  +    +    L    ++
Sbjct: 17  IALAFLGLIGFAFASMDVSNTGAFGGVAGGDSVAVVGGSKISTAELNEAMDNALRRAREE 76

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
              V          +D+ +L+ L+    L  + E+ G  A    V  EI + P   G   
Sbjct: 77  NPDVTMQTLIAEGEMDR-VLEGLIDRYALMAWAEENGFRAGANLVNSEIRQIPAARGPSG 135

Query: 131 KFSHDVFVSRLAREGINEKEYIDHY-TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
            F    + + L    I + +      T +  +  V     G   P ++    A+ F  E 
Sbjct: 136 NFETAAYEAFLRNNSITDSQLRQQLRTTVYFQQAVFPALYGTQLPESIARTYARSFK-ER 194

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           RS     +         DP++A L++++ + +  +  PE + + Y  FD       I  S
Sbjct: 195 RSGGIATIPAALFAPQGDPTDAQLSEFYAENRSRFVRPERRTLRYATFDSSALGGSINPS 254

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
           ++++ A Y+ N E+Y + E R + QL+ P ++ A+     ++ G+ F Q A   G  L  
Sbjct: 255 DEDIAAYYQDNAEEYAARETRNLTQLIVPTREGAEALAARVRGGESFAQAASSSG--LRT 312

Query: 310 ISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
             L    +  I      ++AD+ FS A +G  T     S G+ IA V+++ P    S  E
Sbjct: 313 TQLDGRERSDIRSAASQAVADAYFS-ASEGAVTAPARSSLGWHIARVNSVDPQPARSLAE 371

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
           V+  I   +R  K    + E    +E+ LA G S+  ++    +   D P +  +G    
Sbjct: 372 VRDSIVEVLREQKRQRGIAELAVGIEDRLADGASLSSVASELGVELQDTPPLTDSGLIYG 431

Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTD 485
             E         L F  F  D+   +    AL D  +++  ++ +  P+    L E+  +
Sbjct: 432 TGERVPDMLAPVLEF-AFQIDE--GEPEIGALADQQTFLIYEVADITPSAAAPLAEIRNE 488

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
           V  +W+ V+  E     AN+ VL   +EG
Sbjct: 489 VTAEWRRVRGNEGAEEAANR-VLRRVEEG 516


>gi|56414392|ref|YP_151467.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363312|ref|YP_002142949.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128649|gb|AAV78155.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094789|emb|CAR60322.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 623

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 140/650 (21%), Positives = 290/650 (44%), Gaps = 52/650 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q++  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P F   D KF ++ + + + + G+      D Y + L         + G+  +
Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172

Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           + +L    D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R
Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKSRFMTPEQFR 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D    +  +  S+ ++QA Y+++ +++  PE      +    + +A     +L 
Sbjct: 233 VSYIKLDAATMQALV--SDADIQAYYDQHLDQFTQPERTRYSIIQTKTEDDAKAVLDALN 290

Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           KG+ F  LA+E+   +     G           +P++  A     L +KG  + VI  S 
Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404
           G+++A + +I+P+      EV+ DIA +++     EK  + Y  L++ ++   S D   +
Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463
           +  E++  +      +  +D   +E+   P  + +    + G++     +  +   DG  
Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462

Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V++ E  P   + L EV   V    K  K  ++    A +L++E  K GK    + K
Sbjct: 463 AFVVRVSEHKPEAAKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577
             G S      ++R          D +SQ     S P +    + + N +  + V+    
Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573

Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|283851044|ref|ZP_06368329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp.
           FW1012B]
 gi|283573690|gb|EFC21665.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp.
           FW1012B]
          Length = 650

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 140/663 (21%), Positives = 270/663 (40%), Gaps = 70/663 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK +++W  KI   ++ + F+ WG+    F    ++ + ++  Q V    +  ++
Sbjct: 1   MLDPMRKYAQSWGIKIVFGLIILVFVFWGVGS--FQGDKATVLATIDGQPVLIKDYEKAY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ L ++  K   V + +  +  G   ++  N+V+   L+     +G+      +  EIA
Sbjct: 59  QENLRLVKNKNPNVTDKDL-QDGGFRWQVFSNMVTTRLLEDQAAKLGIAVSPEELRAEIA 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F  +  +F    + + L    +   E+   + + L   + +  +V    P+ +   
Sbjct: 118 KIPAFQNESKQFDAKRYENLLQANDVTPGEFEADFRQNL-LLEKLAAYVS--LPAAVTDT 174

Query: 181 QAKR---FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +A+    F  E  ++ YI            P+   +  ++E  KD +  P   RI Y+ F
Sbjct: 175 EARSIFDFMREQATIHYIPFKTEDFTKGVAPTADQIKAYYEARKDQFATPAQIRIDYVEF 234

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEAFQS------- 289
                 K  E+++ +++  Y+ N++KY  PE +R    LV        EA  +       
Sbjct: 235 TPKALAKPAEVTDADIETAYKANQKKYAKPEQVRVRHFLVMLPADAPKEAVDAATAKLKD 294

Query: 290 ----LKKGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
               LK G  F  L  +         G+  + +  GS  KE+    +  +  FSL KK +
Sbjct: 295 LAAKLKAGADFASLLPKNPNNPEGLIGEDWAWLPKGSLPKEF---GAFEEKAFSL-KKDE 350

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
               +  + G  +      + +   +  EVK +I + +   KA++K+ +    ++E +A 
Sbjct: 351 IGEPVRTALGLHLIQAGEHQAAGEKTLAEVKDEIRSDLAEQKAADKLTKALDTIQEKVAA 410

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF------GKDDPLS 451
           G  + + +  EK   ++    DF  KD    E+      EQ L  +F      G D PLS
Sbjct: 411 GEDLKKAAAEEK---LETKTTDFFAKDTPPAELG---LSEQALAALFTFKQGGGADQPLS 464

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
                   DG ++  ++ E+ PA    +E V TDV KD      AEE   +A       +
Sbjct: 465 TQ------DG-FLLARVAETKPAGFEPMEAV-TDVIKD---RLVAEEAQKRARAQADTVA 513

Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-------SGPVEMVKCFP 564
           K  +      K L A      QI++      F    G++ V        +GP      + 
Sbjct: 514 KAMETEEGKAKVL-ADYKDKIQISQPFTRQGFIPALGMAPVLVQTAFEATGPGWFKAAYA 572

Query: 565 IENGLSYVVFKVTNSKVGPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           + +G  YV+  +            +EKD+++S L Q    +L  + +  ++    V + +
Sbjct: 573 VSDG--YVLAGLEKRMPAETALWDKEKDRWMSTLAQSKQSELFKAYLQTVQQTAKVEILN 630

Query: 621 NLI 623
           + I
Sbjct: 631 DAI 633


>gi|157962498|ref|YP_001502532.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
           ATCC 700345]
 gi|157847498|gb|ABV87997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
           ATCC 700345]
          Length = 621

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 196/426 (46%), Gaps = 54/426 (12%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57
           MLE IR+ S+  +AK  L+++ + F   G+S  L    GSST V   +V  +++  S+  
Sbjct: 1   MLEKIREGSQGVIAKSILILVILSFAFTGVSSYL----GSSTEVAAATVNGEEISNSALE 56

Query: 58  NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +++ E   + Q++G     ++++      + + +L+ LV+   LDQ   ++GL     +
Sbjct: 57  QAYQNERSRLEQQLGDMFATLSADDNYMQSVKQSVLERLVAEKLLDQNAAELGLRVSDEQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   I   P F   D  F +D + + L + G     + D     ++R  +V   VG    
Sbjct: 117 IKAAIMSEPAFQ-TDGAFDNDRYQAILRQLGYQANSFRDMMRIDMTRRQLVATLVG---- 171

Query: 175 SNLLLDQAKRFYF----ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN----YRA 226
           S  +L    ++      + R +DY V++    P +AD S  V  +  + Y D     +  
Sbjct: 172 SEFVLPSEAKYVADLQGQTRDIDYKVID--ATPFLADIS--VTDEQIKAYYDTNLGQFIR 227

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------- 279
           PE   ++YI  D  +  K + +++ E QA Y+++K  Y   E R    ++  +       
Sbjct: 228 PEVVSLNYIELDAKDLAKDVTVTDAEAQAYYDEHKANYTQAEKRLAAHILVQSGDDDAAA 287

Query: 280 QKEADEAFQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIF 330
           + +A+  ++ L+ G  F +LA+         EQG  L     G    E+  D +L    F
Sbjct: 288 KAKAEAIYKQLQDGADFAELAKTESEDTFSGEQGGQLDWFEAGVMEPEF--DTAL----F 341

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +L  KG+++ V+  +FGY I    +I+      F +VK+ I  Q++  +A +K  E    
Sbjct: 342 AL-NKGEYSGVVKTNFGYHIIKALDIQAGAQAPFADVKEKILAQLKDKQAVDKFYE---- 396

Query: 391 LEEFLA 396
           L++ LA
Sbjct: 397 LQQVLA 402


>gi|300721987|ref|YP_003711267.1| peptidyl-prolyl cis/trans isomerase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628484|emb|CBJ89049.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
           outer membrane proteins [Xenorhabdus nematophila ATCC
           19061]
          Length = 626

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 173/387 (44%), Gaps = 27/387 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + FL+ G++  L S SGS     V  Q +  +    ++
Sbjct: 1   MMDNLRTAANGPVLKIVLALIILTFLLTGVTGYLSSESGS-YAAKVNGQTISRAELEQAF 59

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            QE  ++ +++G      + + ++ R +   ++ LD L++   ++Q+   +GL A   +V
Sbjct: 60  LQEKDVLQERLGDQFSALLSDEQQVRQIR--RQSLDRLINTVLIEQYANKLGLSASDDQV 117

Query: 116 WGEIARSPLFH--GK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             EI  +      GK DNK   D +++ LAR  I+   +     K L    ++ + +G  
Sbjct: 118 AEEIRNTSFLQTDGKFDNKKYQD-YLNMLARSNISPDHFAAQVRKELINRQLMQVLMGSE 176

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
                 + Q      + R+V +  L  + + A    ++  L  ++      +  PE  +I
Sbjct: 177 IALPTEIKQEVMLILQERTVRFATLELKSLEAQQKVTDEELKNYYSANSKRFTVPEKVKI 236

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D  ++ K I +S  +++  Y+ N  KY +PE +    +   +   A      L K
Sbjct: 237 SYIKMDAVDELKNITVSEADIEKYYKNNLSKYTTPEQKKYSFIQLVSDSAAKSVLDELNK 296

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKE------YIPDVSLADSIFS--LAKKGDFTPVIHG 344
           G  F QLA E+       S   FS +      ++ + SL + + S  L +KG  + ++  
Sbjct: 297 GADFSQLAAEK-------STDKFSAQKGGDLGWMEESSLPNELKSANLTQKGQLSEIVKL 349

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           S  Y I  + +IKP       ++  +I
Sbjct: 350 SNAYAIFRLDDIKPQVIKPLADIHAEI 376


>gi|109899437|ref|YP_662692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           atlantica T6c]
 gi|109701718|gb|ABG41638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           atlantica T6c]
          Length = 627

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 127/612 (20%), Positives = 257/612 (41%), Gaps = 69/612 (11%)

Query: 1   MLEIIRKASR-TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           MLE IR+ ++ TW   I  +V+ + F+  G+   + S S  +    V    +  +    +
Sbjct: 1   MLERIREGTQGTWAMAILGLVI-LSFVFAGVGSYINS-SAETAAAKVNDDTISQADLERA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E G +  + G    +  A S  L +    +LD L+    L+Q   D+GL     ++ 
Sbjct: 59  YQNERGRMESQYGEAFAALTADSAYLQQFRQGVLDRLIGDKLLEQAAIDMGLRVSDAQIK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   D KF ++ + + L + G    E+ D+    ++R  +    +G      
Sbjct: 119 QAIVAMPEFQF-DGKFDNERYTAVLRQAGFQPNEFRDYMRVDMTRRQLSNALLGSEFTLA 177

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
               QA +   + R   Y+ +         + S+  +  +++     +   +   ++Y+ 
Sbjct: 178 AETTQAYKLQQQTRDARYLTIPAESFKDGINVSDDDVENYYQANITQFDTEQKVSLAYVE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQS 289
             V +    I +S+DE    YE+N + + + E R    ++          +++A++    
Sbjct: 238 LSVDDLLTDIVVSDDEALQYYEQNIQDFRTQEERRASHILIEFGDDEQGARQQAEDVLSK 297

Query: 290 LKKGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           +  G  F +LA+E          G  L   S G      + D +  ++ ++LA  GD + 
Sbjct: 298 INDGGDFAELAKEYSSDTFSAENGGDLDWFSAG------MMDPAFEEATYALANVGDVSS 351

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT- 399
           V+   FGY I  +++IKP  T  F +VK+D+  +++  +A E+      R+ E +A  T 
Sbjct: 352 VVESEFGYHIIKLTDIKPEETSPFTDVKEDVIAKLKSERAEEEFYAKQLRMAE-VAFETP 410

Query: 400 -SMDEISRREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
            ++DE++    I  +D+       +D     V    V A  + ++L+      +D ++ D
Sbjct: 411 DTLDEVA---AIAEVDVNTTVMFSQDSVPAAVNYPNVVAQAFSDELI------NDQVNSD 461

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK------------KDWKT-----VKTA 496
             + L D   M+V++      R + LEEV  ++             K+W       +K  
Sbjct: 462 -VIELGDNHVMFVRVANYEAQRTKALEEVSPEINDILLAEQAQQAAKEWAETLLVDIKAE 520

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
           ++VS       +E+ ++    R  G  +  +L+T       D E+       + ++F+G 
Sbjct: 521 QDVSESLQAKAVEWQEQEAVARS-GSQISPALVTALFKLTEDKESNA----QVVELFNGD 575

Query: 557 VEMVKCFPIENG 568
           V +V+   + +G
Sbjct: 576 VGLVQLMKVNDG 587


>gi|16759432|ref|NP_455049.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142796|ref|NP_806138.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213160790|ref|ZP_03346500.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213425852|ref|ZP_03358602.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213646001|ref|ZP_03376054.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213850134|ref|ZP_03381032.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289829271|ref|ZP_06546883.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25320965|pir||AG0558 peptidylprolyl isomerase (EC 5.2.1.8) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16501723|emb|CAD08911.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138428|gb|AAO69998.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 623

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 141/650 (21%), Positives = 291/650 (44%), Gaps = 52/650 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q++  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P F   D KF ++ + + + + G+      D YT+ L         + G+  +
Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYTQALRNQLTTQQLINGVAGT 172

Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           + +L    D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R
Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D    +  +  S+ ++QA Y+++ +++  PE      +    + +A     +L 
Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290

Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           KG+ F  LA+E+   +     G           +P++  A     L +KG  + VI  S 
Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404
           G+++A + +I+P+      EV+ DIA +++     EK  + Y  L++ ++   S D   +
Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463
           +  E++  +      +  +D   +E+   P  + +    + G++     +  +   DG  
Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462

Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V++ E  P   + L EV   V    K  K  ++    A +L++E  K GK    + K
Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577
             G S      ++R          D +SQ     S P +    + + N +  + V+    
Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573

Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|209694402|ref|YP_002262330.1| peptidyl-prolyl cis-trans isomerase D [Aliivibrio salmonicida
           LFI1238]
 gi|208008353|emb|CAQ78508.1| peptidyl-prolyl cis-trans isomerase D [Aliivibrio salmonicida
           LFI1238]
          Length = 618

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 169/381 (44%), Gaps = 15/381 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ IR+ S   V KI L ++   F+  G+   L  V GS  + + VG +++  + F   
Sbjct: 1   MMDRIREGSTGLVVKIILGLIIFSFVFAGVGSYL--VGGSQPLAAKVGEREITRNDFEQV 58

Query: 60  WKQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E   +  ++G   ++   + A      K +LD +V+ A LD   +++GL     ++ 
Sbjct: 59  YQNERNRMQSQLGEYFSTLLGDPAYVEQFRKSVLDRMVNDALLDNQAQELGLRVSDEQIR 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPS 175
             I   P F  KD KF  ++F   L R G     + ++    L R  +V          S
Sbjct: 119 QAILSMPQFQ-KDGKFDEEIFNVSLRRAGFTSDSFAEYLRGDLVRNQLVSALESTEFTLS 177

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           N +  Q +    + R +  I L+       A  +   + ++++  K  +  PE  ++SYI
Sbjct: 178 NEVKAQGE-LEGQQREIRTITLDTATFAKNAKVTEEEVKEYYDANKQQFVRPEQVKVSYI 236

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEAFQSLKKGK 294
                  + +  I+++E+Q  Y +N++KY + E R V   L+  ++ +A      L  G+
Sbjct: 237 ELSGESLKAQAPITDEEIQTYYNENQDKYSTQEKREVSHILIKGDEADAQAVLARLDAGE 296

Query: 295 KFIQLAEEQGKSLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            F  +A+E  + +       SLG   +  I D    D+ F L   GD + ++  +FGY I
Sbjct: 297 DFATVAKEDSQDIPTAKEGGSLGWIERGVI-DPEFEDAAFQLVNVGDHSGLVKSAFGYHI 355

Query: 351 AHVSNIKPSFTVSFQEVKKDI 371
             +  I+   T    +V  DI
Sbjct: 356 IQLDAIEAPKTKPLAKVSADI 376


>gi|88798823|ref|ZP_01114406.1| peptidyl-prolyl cis-trans isomerase D, putative [Reinekea sp.
           MED297]
 gi|88778586|gb|EAR09778.1| peptidyl-prolyl cis-trans isomerase D, putative [Reinekea sp.
           MED297]
          Length = 610

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/398 (20%), Positives = 182/398 (45%), Gaps = 23/398 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQ---KVPFSSFI 57
           ML+ +R ++R    K+ + ++ + F ++G ++++ S++G+S   +V  +   +V +   +
Sbjct: 1   MLDALRNSARGTAGKVIVGLIVITFTLFG-AESIISIAGNSAPATVNGEDISEVEYQRLL 59

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +  +QEL   + + G    ++   S  +  +I+++L+S     Q  + +  +A   +V  
Sbjct: 60  SRRQQEL---TSQFGAEAAAQLMNSSFVTDEIIESLISQELQMQLADKLAFDASEDQVVQ 116

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             A  P F   D +FS D +++ LA  G N + ++    +  +    +  F  G+  S  
Sbjct: 117 SFADIPAFQ-IDGEFSQDRYLNVLAANGFNHQSFVAAQKEQAA----LAQFQSGVANSAF 171

Query: 178 LLDQAKRFYF----ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++++A   Y     + RS  Y    +++  A  + S+  L  ++E+ ++ + + E  ++ 
Sbjct: 172 VVEKAIDRYANLIAQERSFQYKAFESQNYLAQVEVSDGELRDYYEQNQEQFLSEESVKVR 231

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----NQKEADEAFQS 289
           Y+   +    ++  ++  E+Q+EY+          +R +  ++F     NQ EA  A   
Sbjct: 232 YLTISLDSLAEQQSVTEQEIQSEYDSYVASLNEDNVREISHILFADGDDNQAEAQAALTR 291

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSF 346
           L +G++F  LA E          G    E IPDV      D+   L++ G  +  +   +
Sbjct: 292 LNQGEEFADLASELSDDPGSAEFGGSLGELIPDVYVDEFYDAALELSEVGQVSAPVETQY 351

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
           G  +  +  +  S      EV+ ++   +R  KA E++
Sbjct: 352 GVHLIRLDALNASDPEPLSEVRDELVADIRERKAQEEL 389


>gi|114563758|ref|YP_751271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
 gi|114335051|gb|ABI72433.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
          Length = 625

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 180/403 (44%), Gaps = 36/403 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  VAK  LV++ + F   G+S  L S +G    V V   ++  +    ++
Sbjct: 1   MLEKIREGSQGIVAKTILVLVILSFAFAGVSSYLGSNTGVPAAV-VNGDEIGANELEQAF 59

Query: 61  KQELGMISQKIGFVVNSERARSV---GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   I Q++G +  +  A      G+ + +LD L++   +DQ    +GL     ++  
Sbjct: 60  QNERSRIEQQLGEMFTALAADDSYMNGIKQGVLDRLIADKLIDQAANKLGLRVSDEQIKK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D +F ++ +++ L + G     + +     ++R  ++   VG    S  
Sbjct: 120 AIIEEPAFQ-TDGQFDNERYLAVLRQLGYQTTSFRNMMRVDMTRRQLLNALVG----SEF 174

Query: 178 LLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           +LD    Q      + R + Y+V+++    +    ++     +++     Y +PE   + 
Sbjct: 175 VLDGEAKQLAEVQGQTRDIRYLVVDSTPFLSTVSVADEEAQSYYDANISQYMSPEKVSLE 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEA 286
           Y+  +V +  K  E S++E++  YE+NK +Y + E R    +          ++ +AD  
Sbjct: 235 YVELNVADMAKSSETSDEEVKTYYEENKAQYQTAEKRLAAHIFVAATDDDSADKAKADAI 294

Query: 287 FQSLKKGKKFI---------QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
              L  G+ F          QL+ +QG  L     G      + D +  +++F L +K  
Sbjct: 295 EAKLTAGEDFADVAKADSDDQLSAQQGGKLDWFEQG------VMDPAFDEALFGL-QKDQ 347

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
            + ++   FGY I  + +++ S   +F+ VK  I  Q++  KA
Sbjct: 348 VSSIVKSEFGYHIIKLLDLQASQATAFENVKAKIVAQLQEKKA 390


>gi|332992311|gb|AEF02366.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           sp. SN2]
          Length = 630

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 132/656 (20%), Positives = 274/656 (41%), Gaps = 60/656 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+   A   + ++ + F+  G+   L S SG++ V +V  +++        +
Sbjct: 1   MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYLTS-SGTTAVATVNGEEISAQELERGY 59

Query: 61  KQELGMISQKIGFVV----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + +   +  + G  +    +SE+  S    + +LD L++   + Q  +++GL     ++ 
Sbjct: 60  QNQRAQMESQFGESIAQLFSSEQYLS-DFRRNVLDRLIAEKLIQQQAQEMGLRVSDAQIR 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I + P F     +F +D F + L + G    ++ D+    +++  +            
Sbjct: 119 ETIVQMPEFQFG-GQFDNDRFQTILRQNGFQVADFRDYLRIQMTQNQLAAALTNSEFALP 177

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
              ++A     + R   Y+++++       + +   + +++      +   E  +++Y+ 
Sbjct: 178 GEAERANALQLQTRDAKYVMIDSASFAESVEVTEDDIAEYYNANITAFDTEEQIKLAYVS 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------FQS 289
             V + + ++ + ++ ++  Y+ N   Y   E R V  ++  +  +AD A          
Sbjct: 238 LTVEDVKSRVSVDDEAVRTYYDNNLSGYGKEEERRVSHILIESGDDADAAKAKTQALLDQ 297

Query: 290 LKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           L  G  F +LAE         E G  L  I+ G      + D +  +++FSLA  GD+T 
Sbjct: 298 LNDGADFAELAENNSDDTFSAENGGDLDFITPG------MMDDAFDEAVFSLANVGDYTD 351

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
           V+   FG+ I  ++ +K +   +F++V+ +I   +   KA          LEEF  L  +
Sbjct: 352 VVETEFGFHIIKLTELKEAQVQAFEDVEAEIRETLLTDKA----------LEEFFELQNT 401

Query: 401 MDEIS-----RREKIV-SIDLPLVD---FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
           M EI+       E +  ++DLP+ +   F+   V      + P   ++ F     D+ ++
Sbjct: 402 MAEIAFEVPDTLEDVANAVDLPVQETGLFSRNTVPVN--MSSPALTEVAFSSELIDEGVN 459

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
            D  + L D + + V++ E +P R + L+EV   +    K  K  E   S A   V+E  
Sbjct: 460 SD-IIELDDETVVVVRVVEHLPQRTQALDEVRDGIVSTVKAQKAQEAAESWATS-VVESL 517

Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571
           ++G++   +   L    L       +           + ++F+   E  K   +   +S 
Sbjct: 518 QQGES---VDATLAEKSLNWESAEAVARSGSTLNRSIVDKLFTLSTEAEKRVDVIATVSG 574

Query: 572 VV-----FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
            V      KV ++     +  +     L QM  + +    I  L++   VTV +NL
Sbjct: 575 DVAIVELVKVNSAPALSAEMSESLKPRLAQMQGQRVYQQFIEALRADADVTVSENL 630


>gi|58698918|ref|ZP_00373781.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58534569|gb|EAL58705.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 578

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 115/536 (21%), Positives = 243/536 (45%), Gaps = 33/536 (6%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           + +  K+ +V+L    +  G+ + L        V  VG++ +    + + ++     IS 
Sbjct: 4   KNFFTKVTVVLLACLLIFVGVGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQIS- 62

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
             G   + E+ + +  D  +L+ L+    L     ++GL      +   I  +  F    
Sbjct: 63  --GSDASREQVKKLKYD--LLNALIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQNDK 118

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-------LLDQA 182
            +F  + F   L    + EKEYI    K+L       MF+  +   N        + +Q 
Sbjct: 119 GEFDKNKFHETLNDLHMTEKEYIAKLEKILPAM----MFMTSLFKDNYPVTFGEKIDEQI 174

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
               ++ R VD + +    V  I +P +  L   +E+ K ++  PEY+   YI  +    
Sbjct: 175 YNSRYQTRVVDIVKITEDAVTNIPEPDDQTLLDLYERNKSHFYYPEYRTAQYISLEQKYF 234

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAE 301
           E +I+IS++E+    E+ + +    + R +  ++F  ++EA+ A ++ ++GK  F Q+ E
Sbjct: 235 EDQIKISDEEVDGIIEQQELR----DQRDIFNIIFSTKEEAETARRAFEEGKTSFEQIVE 290

Query: 302 EQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           E GK+ L +  + + +K+++P+  + + +F+L K G+ + V+  SFG+ I  V +     
Sbjct: 291 EFGKAELEETRVNNITKDFLPE-DMREKVFAL-KVGEVSEVLASSFGWHIIKVESAHQIS 348

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                ++KKDI + +   K+ E+V +   ++   +  G++++EI     +    +  VD 
Sbjct: 349 DEDLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSAIEEILSEYNLPIQTIGPVDA 408

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           +GKD  G  V        L+  +F ++    K +   + D + + V+I + +P + +  E
Sbjct: 409 SGKDQSGNNVGD---SSDLISFIFSREKD-QKGYFKGVGD-AVVSVKIIDIVPPKSQSFE 463

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           E      + W+    +E +  +  ++  E++ + +   D  K  G  L+   Q++R
Sbjct: 464 EGRASAVELWQ----SEFIKERMFKIGQEFAVQLREKTDWEKIQGVELVEDQQMHR 515


>gi|149378497|ref|ZP_01896176.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola
           DG893]
 gi|149357219|gb|EDM45762.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola
           DG893]
          Length = 608

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 116/544 (21%), Positives = 248/544 (45%), Gaps = 51/544 (9%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN--- 58
           L+ IR+ ++  +AKI + +L V   IWG+   +   SG   V +V  + +    F+    
Sbjct: 1   LQDIRENAQGTIAKIIIGLLIVSLSIWGMDAIVGGFSGEPEVATVNGEDITEREFLRVVQ 60

Query: 59  -SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              ++ L  +      +++ ++ R     + +LD L+    +    ED GLE     +  
Sbjct: 61  IESQRRLSEMENPDPSLLDEDQVR-----QDVLDALIQQKVMTLNAEDQGLELSDADIDS 115

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I + P F   D  F+ D FVS +   G+   E+ +   K      VV     G+  S +
Sbjct: 116 LITQMPQFQ-VDGTFNRDRFVSAVRNMGMGVAEFRETMRKQY----VVNQIRAGISQSGV 170

Query: 178 LLDQ--AKRFYFENRSVDYIV--LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           + D+  A+    +N++ ++ V  L+   V    + ++A +  ++++ K+ ++ PE    S
Sbjct: 171 VTDENVAQLLRIQNQTRNFRVTTLSADAVSDQVEVTDADVEAYYDENKEAFKLPESVDAS 230

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK- 292
           YI+  +    + IEIS+++L+  YE+   +    E R    ++  + + A+E   ++++ 
Sbjct: 231 YIVLSLAALAETIEISDEQLRDYYEQRASELMREE-RRASHILIEDGENAEETMATIQER 289

Query: 293 ---GKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
              G+ F  LAE         EQG  L       F++  + D +  D++F+L ++G+ + 
Sbjct: 290 LAGGESFAALAEEFSVDTVSAEQGGDL------GFAERGVYDPAFEDALFAL-EEGEVSE 342

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
            +  SFG  +  + +++ +      E++  +  ++   +A+E+  E    L +   L  +
Sbjct: 343 PVSTSFGVHLIKLEDVQKTEAPPLAELEDQLRRELAQREATERFAEVRSELAD---LAYA 399

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
            D ++   +   + L + + +G    G +    P+    L R    +D L++     L D
Sbjct: 400 ADNLAGPAE--ELGLEVREKSGITRNGGDA---PFDHAGLIRQLFSEDVLNEGFNTELID 454

Query: 461 -GSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
            G  M V  ++ E   A+ + LE+V  +++      KT E ++ +A+ ++ +  + GK+ 
Sbjct: 455 VGDNMSVVARVGEYQEAQQQPLEDVAEEIRAALTRQKTREALNERADAIIADL-ESGKDI 513

Query: 518 RDIG 521
            ++G
Sbjct: 514 EELG 517


>gi|168465546|ref|ZP_02699428.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195631887|gb|EDX50407.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 623

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 138/651 (21%), Positives = 288/651 (44%), Gaps = 54/651 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q++  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58

Query: 60  WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
           +  E   + Q++G        N    +S  L +++L+ L+  A LDQ+  ++ L     +
Sbjct: 59  FNNERNRMQQQLGDRYSELAANEGHMKS--LRQQVLNRLIDEALLDQYSRELKLGISDEQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V   I  +P F   D KF ++ + + + + G+      D Y + L         + G+  
Sbjct: 117 VKQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAG 171

Query: 175 SNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
           ++ +L    D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  
Sbjct: 172 TDFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQF 231

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           R+SYI  D    +  +  S+ ++QA Y+++ +++  PE      +    + +A     +L
Sbjct: 232 RVSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDAL 289

Query: 291 KKGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            KG+ F  LA+E+   +     G           +P++  A     L +KG  + VI  S
Sbjct: 290 NKGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSS 345

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE-- 403
            G+++A + +I+P+      EV+ DIA +++     EK  + Y  L++ ++   S D   
Sbjct: 346 VGFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDTYYALQQKVSDAASNDNES 401

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGS 462
           ++  E++  +      +  +D   +E+   P  + +    + G++     +  +   DG 
Sbjct: 402 LAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGD 461

Query: 463 YMW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
             + V++ E  P   + L EV   V    K  K  ++    A +L++E  K GK    + 
Sbjct: 462 RAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM- 519

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKV 576
           K  G S      ++R          D +SQ     S P +    + + N +  + V+   
Sbjct: 520 KAAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAF 572

Query: 577 TNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 573 DEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|168237567|ref|ZP_02662625.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737891|ref|YP_002113483.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194713393|gb|ACF92614.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197289587|gb|EDY28950.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 623

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 140/650 (21%), Positives = 290/650 (44%), Gaps = 52/650 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q++  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P F   D KF ++ + + + + G+      D Y + L         + G+  +
Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172

Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           + +L    D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R
Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKARFMTPEQFR 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D    +  +  S+ ++QA Y+++ +++  PE      +    + +A     +L 
Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290

Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           KG+ F  LA+E+   +     G           +P++  A     L +KG  + VI  S 
Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404
           G+++A + +I+P+      EV+ DIA +++     EK  + Y  L++ ++   S D   +
Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463
           +  E++  +      +  +D   +E+   P  + +    + G++     +  +   DG  
Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462

Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V++ E  P   + L EV   V    K  K  ++    A +L++E  K GK    + K
Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577
             G S      ++R          D +SQ     S P +    + + N +  + V+    
Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573

Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|92114164|ref|YP_574092.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
           salexigens DSM 3043]
 gi|91797254|gb|ABE59393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
           salexigens DSM 3043]
          Length = 602

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 118/536 (22%), Positives = 245/536 (45%), Gaps = 66/536 (12%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV--SGSSTVVSVGRQKVPFSSFIN 58
           ML+ IR+ S+ WVAK+ +  + V F ++G +++L  V  SGS  + +V  +  P      
Sbjct: 1   MLQRIREGSQGWVAKMIVGAIIVTFALFG-AESLVGVFTSGSDDIATVNGE--PIKRQAV 57

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
             + + G+ S +    V  E+ R   L  +++D +++   LDQ+ E+ G+     ++   
Sbjct: 58  ELQVQRGIRSGQ----VPPEQERE--LRAQVIDQMITTELLDQYAEEGGMHLSDAQIDQL 111

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I   P F   +  FS ++F +RLA  G     +     + + R         G+  S  +
Sbjct: 112 IVSRPEFQDSEGNFSQELFSNRLASAGYTPLSFRRELRRDMKRQ----QLQQGVALSTFV 167

Query: 179 L-DQAKRFY-FENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           L  +A+R    +N++ D  Y  L    + A  + + + +  ++E ++D Y+ PE  +++Y
Sbjct: 168 LPGEAERLQALQNQTRDFRYASLTADDLEAPVEVTESDMQAYYEAHQDQYQRPEQVKVAY 227

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEAFQSLKK 292
           ++ +  +  + +++   +L+  Y   +E   +P  R V  ++  + +++  DEA   +++
Sbjct: 228 VVLNQQDVAQDVDVDEQQLRDAYAAERED--AP--REVAHVMVDYGDERSRDEAMARIEE 283

Query: 293 GKKFIQLAEEQGKSLSDIS---------------LGSFSKEYIPDVSLADSIFSLAKKGD 337
            +   QLAE  G   +D++               LG  ++ +  D +  D+ FSL  +G 
Sbjct: 284 AQG--QLAE--GADFADVAAEYSDDATTANKGGNLGVINRGFFGD-AFDDAAFSL-DEGQ 337

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
            + V+    G  +  V++I      SF E + ++A Q+R+  + +   E  ++LE+    
Sbjct: 338 VSSVVDSGDGLHLIKVTDID---MPSFDEQRDELAEQVRLDNSRDAFNERAQQLED---R 391

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP------YKEQLLFRVFGKDDPLS 451
             + D++      + +D+   D+   D   + V A P      + E +L   +  D    
Sbjct: 392 SYAADDLQSVADELGLDVQTSDWVSAD-SAEGVLAEPGMMDAAFSEDVLENGYNSD---- 446

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
               + L D     +++ +   A    L+EV   V++  + VKT E + ++A +LV
Sbjct: 447 ---VIELDDQRRAVLRVVDHREATTLSLDEVSERVREATREVKTREALEARAERLV 499


>gi|262171087|ref|ZP_06038765.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus MB-451]
 gi|261892163|gb|EEY38149.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus MB-451]
          Length = 619

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 114/519 (21%), Positives = 230/519 (44%), Gaps = 22/519 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++        K +LD +V+   L+Q    +GL    G+V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDGQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175
            I   P F  +  KF  +++ + L R G     + ++  K L R  ++    G     P 
Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178

Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + L DQ      + R +  I L+          S+  + Q+++   + +  PE  ++SY
Sbjct: 179 EVNLQDQ---LVSQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKK 292
           +       + +I I ++  Q  Y+++ +KY S E R V  ++    ++++A      L  
Sbjct: 236 VELSADALKAEIAIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNA 295

Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  +A+E+    G +    SLG   ++ + D +   + ++L +KG  + ++   FGY
Sbjct: 296 GADFTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I  + ++K      + EV + I  ++   +A +        LE+ LA   S D +    
Sbjct: 355 HIIRLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEK-LAFEHS-DSLDEAA 412

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
           K +S  +   DF   + +  ++ A+P   Q L     K+D L+ +     P+   + V++
Sbjct: 413 KAISAKVEHTDFISAE-QAPDLLAVPAVLQALKSPEVKEDGLNSEVIEVAPE-HVVVVRV 470

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           +ES P     L+EV T V +    +K  ++     N++V
Sbjct: 471 EESRPETVLPLQEVKTQVVELLSQLKGEQQALELGNKIV 509


>gi|241761010|ref|ZP_04759099.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241374629|gb|EER64090.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 642

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 104/494 (21%), Positives = 216/494 (43%), Gaps = 25/494 (5%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
           T+  +G++K+  S   +  +++   + Q+   +       S G+ K I    ++  ++ +
Sbjct: 49  TIAKIGKRKLSASEAYDYIRRDYLAVRQQNPSIDAMTFVASGGIGKAI-SGYIAAKSMSE 107

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
           + ++ G+      V GEIA  P+F G + KF   +F + LA++ +   +      + + R
Sbjct: 108 WAKNNGIGVSQKMVDGEIASIPVFIGANGKFDQKLFDAVLAQQHMTADQLRSDIAEDMVR 167

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFE-NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
             ++   V G++  N + +   R   + +  +   +      P+   P +  +  +++ +
Sbjct: 168 RQILIPIVAGLKTPNAMAEPFARMLIQRHEGMILAIPTTVMPPSDKAPDDKAIADFYKSH 227

Query: 221 KDNYRAPEYKRISYILFDVHE-KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            + Y  PE + I Y L    E K  +++I++      ++ +  +Y + E R + Q++ P+
Sbjct: 228 IERYTLPEQRVIRYALVKPDEVKPTEVQIAD-----YFKSHASEYAATEKRDLSQIILPD 282

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS---LADSIFSLAKKG 336
           +  A+     +  G  F+  A+  G S  DI LG+ SKE   + +    A++ FSL   G
Sbjct: 283 KAAAEALLAKIHGGLNFVAAAKTVGFSSEDIRLGALSKEQYSEKASPEAANAAFSLG-DG 341

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
             + V+H   G+ I HV  I+     +  +++ +I  Q+  +  S+ +     R+++ ++
Sbjct: 342 AVSNVLHSPLGWHIVHVDKIERKPAATLDQMRGEITRQLSESLTSKAMTAKINRIQDNIS 401

Query: 397 LGTSMDEISRREKI-VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD-DPLSKDH 454
            G    +I+ +EK+ V    PL   A  D   K +    ++        GK+ +P     
Sbjct: 402 NGNGFSDIAHKEKLEVVQTAPLRRDASDDQIVKSLVTPAFES-------GKNSEPFVATI 454

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
           T    D  Y    +   I    + LE+V   V  D +  +  E+    A+ L L+ +K G
Sbjct: 455 TA---DKLYALAMVDHVIAPAAQPLEKVKNQVVMDIRHSEMVEKSRKLADDL-LKKAKSG 510

Query: 515 KNFRDIGKNLGASL 528
             F  +    G  L
Sbjct: 511 VPFAQLAAQAGVKL 524


>gi|62179064|ref|YP_215481.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62126697|gb|AAX64400.1| peptidyl prolyl isomerase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 623

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 140/650 (21%), Positives = 291/650 (44%), Gaps = 52/650 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q++  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P F   D KF ++ + + + + G+      D Y + L         + G+  +
Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172

Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           + +L    D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R
Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D    +  +  S+ ++QA Y+++ +++  PE      +    + +A     +L 
Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290

Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           KG+ F  LA+E+   +     G           +P++  A     L +KG  + VI  S 
Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404
           G+++A + +I+P+      EV+ DIA +++     EK  + Y  L++ ++   S D   +
Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463
           +  E++  +      +  +D   +E+   P  + +    + G++     +  +   DG  
Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462

Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V++ E  P   + L EV   V    K  K  ++    A +L++E  K GK+   + K
Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKSAEAM-K 520

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577
             G S      ++R          D +SQ     S P +    + + N +  + V+    
Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573

Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|258625370|ref|ZP_05720267.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM603]
 gi|258582361|gb|EEW07213.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM603]
          Length = 619

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 114/519 (21%), Positives = 228/519 (43%), Gaps = 22/519 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++        K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175
            I   P F  +  KF  +++ + L R G     + ++  K L R  ++    G     P 
Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178

Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + L DQ      + R +  I L+          S+  + Q+++   + +  PE  ++SY
Sbjct: 179 EVNLQDQ---LISQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKK 292
           +       + +I I ++  Q  Y+++ +KY S E R V  ++    ++++A      L  
Sbjct: 236 VELSADALKAEISIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNA 295

Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  +A+E+    G +    SLG   ++ + D +   + ++L +KG  + ++   FGY
Sbjct: 296 GADFTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I  + ++K      + EV + I  ++   +A +        LE+ LA   S D +    
Sbjct: 355 HIIRLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEK-LAFEHS-DSLDEAA 412

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
           K +S  +   DF   D +  ++ A+P   Q L     K+D L+ +     P    + V++
Sbjct: 413 KAISAKVEHTDFISAD-QAPDLLAVPAVLQALKSPEVKEDGLNSEVIEVAP-EHVVVVRV 470

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           +ES P     L+EV T V +    +K  ++     N++V
Sbjct: 471 EESRPETVLPLQEVKTQVVEQLSQLKGEQQALELGNKIV 509


>gi|260753024|ref|YP_003225917.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552387|gb|ACV75333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 642

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 102/493 (20%), Positives = 215/493 (43%), Gaps = 23/493 (4%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
           T+  +G++K+  S   +  +++   + Q+   +       S G+ K I    ++  ++ +
Sbjct: 49  TIAKIGKRKLSASEAYDYIRRDYLAVRQQNPSIDAMTFVASGGIGKAI-SGYIAAKSMSE 107

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
           + ++ G+      V GEIA  P+F G + KF   +F + LA++ +   +      + + R
Sbjct: 108 WAKNNGIGVSQKMVDGEIASIPVFIGANGKFDQKLFDAVLAQQHMTADQLRSDIAEDMVR 167

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFE-NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
             ++   V G++  N + +   R   + +  +   +      P+   P +  +  +++ +
Sbjct: 168 RQILIPIVAGLKTPNAMAEPFARMLIQRHEGMILAIPTTVMPPSDKAPDDKAIADFYKSH 227

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
            + Y  PE + I Y L     K  +++ +  ++   ++ +  +Y + E R + Q++ P++
Sbjct: 228 IERYTLPEQRVIRYALV----KPDEVKPTEAQIADYFKSHASEYAATEKRDLSQIILPDK 283

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS---LADSIFSLAKKGD 337
             A+     +  G  F+  A+  G S  DI LG+ SKE   + +    A++ FSL   G 
Sbjct: 284 AAAEALLAKIHGGLNFVAAAKTVGFSSEDIRLGALSKEQYSEKASPEAANAAFSLG-DGA 342

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
            + V+H   G+ I HV  I+     +  +++ +I  Q+  +  S+ +     R+++ ++ 
Sbjct: 343 VSNVLHSPLGWHIVHVDKIERKPAATLDQMRGEITRQLSESLTSKAMTAKINRIQDNISN 402

Query: 398 GTSMDEISRREKI-VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD-DPLSKDHT 455
           G    +I+ +EK+ V    PL   A  D   K +    ++        GK+ +P     T
Sbjct: 403 GNGFSDIAHKEKLEVVQTAPLRRDASDDQIVKSLVTPAFES-------GKNSEPFVATIT 455

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
               D  Y    +   I    + LE+V   V  D +  +  E+    A+ L L+ +K G 
Sbjct: 456 A---DKLYALAMVDHVIAPAAQPLEKVKNQVVMDIRHSEMVEKSRKLADDL-LKKAKSGV 511

Query: 516 NFRDIGKNLGASL 528
            F  +    G  L
Sbjct: 512 PFAQLAAQAGVKL 524


>gi|283856265|ref|YP_162202.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|283775260|gb|AAV89091.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 642

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 102/493 (20%), Positives = 215/493 (43%), Gaps = 23/493 (4%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
           T+  +G++K+  S   +  +++   + Q+   +       S G+ K I    ++  ++ +
Sbjct: 49  TIAKIGKRKLSASEAYDYIRRDYLAVRQQNPSIDAMTFVASGGIGKAI-SGYIAAKSMSE 107

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
           + ++ G+      V GEIA  P+F G + KF   +F + LA++ +   +      + + R
Sbjct: 108 WAKNNGIGVSQKMVDGEIASIPVFIGANGKFDQKLFDAVLAQQHMTADQLRSDIAEDMVR 167

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFE-NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
             ++   V G++  N + +   R   + +  +   +      P+   P +  +  +++ +
Sbjct: 168 RQILIPIVAGLKTPNAMAEPFARMLIQRHEGMILAIPTTVMPPSDKAPDDKAIADFYKSH 227

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
            + Y  PE + I Y L     K  +++ +  ++   ++ +  +Y + E R + Q++ P++
Sbjct: 228 IERYTLPEQRVIRYALV----KPDEVKPTEAQIADYFKSHASEYAATEKRDLSQIILPDK 283

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS---LADSIFSLAKKGD 337
             A+     +  G  F+  A+  G S  DI LG+ SKE   + +    A++ FSL   G 
Sbjct: 284 AAAEALLAKIHGGLNFVAAAKTVGFSSEDIRLGTLSKEQYSEKASPEAANAAFSLG-DGA 342

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
            + V+H   G+ I HV  I+     +  +++ +I  Q+  +  S+ +     R+++ ++ 
Sbjct: 343 VSNVLHSPLGWHIVHVDKIERKPAATLDQMRGEITRQLSESLTSKAMTAKINRIQDNISN 402

Query: 398 GTSMDEISRREKI-VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD-DPLSKDHT 455
           G    +I+ +EK+ V    PL   A  D   K +    ++        GK+ +P     T
Sbjct: 403 GNGFSDIAHKEKLEVVQTAPLRRDASDDQIVKSLVTPAFES-------GKNSEPFVATIT 455

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
               D  Y    +   I    + LE+V   V  D +  +  E+    A+ L L+ +K G 
Sbjct: 456 A---DKLYALAMVDHVIAPAAQPLEKVKNQVVMDIRHSEMVEKSRKLADDL-LKKAKSGV 511

Query: 516 NFRDIGKNLGASL 528
            F  +    G  L
Sbjct: 512 PFAQLAAQAGVKL 524


>gi|254418312|ref|ZP_05032036.1| hypothetical protein BBAL3_622 [Brevundimonas sp. BAL3]
 gi|196184489|gb|EDX79465.1| hypothetical protein BBAL3_622 [Brevundimonas sp. BAL3]
          Length = 635

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 137/622 (22%), Positives = 259/622 (41%), Gaps = 50/622 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+   R  SR+  A   LV++ + F+I G    +F+  G   V+  G + +  + F  ++
Sbjct: 1   MITAFRAFSRSKWAAALLVLIAISFVIVGARMDVFANLGPKHVIDAGDRSMNEAEFSAAF 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +    I Q+ G  V +E   +  +  + LD+         +    G+      +  +I 
Sbjct: 61  GRVRENIQQQAGRPVTNEDLIAENIHTRFLDSQTEQFGFLNWAWKAGIRPGKELIVKQIR 120

Query: 121 RSP-LFHGKDNKFSHDVFVSRLAREGIN----EKEYIDHYTKMLSRTDVVG--MFVGGMR 173
           + P  F+    +F    + S LA++ +     E++  D Y      T+  G  +F G   
Sbjct: 121 QIPAFFNSVTGQFDQQAYESALAQQNLTPAMLEQDLRDQYA-----TEHFGAAIFAGARA 175

Query: 174 PS--NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           P     LL  A    FE R   +  +       I  P++A L  + ++     RAPE++ 
Sbjct: 176 PRIYGALLAGAA---FETRDGRWFEVTPAMAGEIPAPTDAQLNAFIQENAARLRAPEFRM 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +S +LF        + +S++ ++  +E  K+    PE RT   L  P++  A +   +L+
Sbjct: 233 VSVVLFTPDPGAAPV-VSDERIRERFEFKKDSLGKPETRTFVTLTAPSRDVAQKIAAALR 291

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            G+    +   +  S+   S     +  + D + A ++F L       PV  G  G+ +A
Sbjct: 292 AGQSPADVG--RANSIQPASFNVTPRAAVGDAATAAAVFGLQVNQVSDPVQAG-VGFAVA 348

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK-EDYKRLEEFLA---LGTSMDEISRR 407
            V+ I+P    + +  ++ I  ++R    +E VK + Y ++E++ A    G ++ + +R 
Sbjct: 349 KVTAIQPGQPATLENSREQIVAELR----AEDVKGQTYAKVEKYEAARTAGKNLADAARE 404

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD---GSYM 464
                IDLP     GK   G+ + A P       +VF     L+K     + D   G Y 
Sbjct: 405 AGGRVIDLPPFTKDGKLPNGQALNAPP-------QVFETAWSLTKGGESDVIDAGQGQYF 457

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            V++ +  P+    L EV   +   W   + +  +++KA +L     ++G++   + +++
Sbjct: 458 AVRVNDIRPSALPTLAEVRAPLAAQWTQREISRRLAAKAEELASRV-RQGQDIAAVARSV 516

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV-----TNS 579
            A L     + R     +  G   +  +F      V   P E G  Y+V +V      N 
Sbjct: 517 NAPLTVRTGVVRDQATQESLGQGVLQGLFGQAKGQVFSQPGEGG--YLVGRVDGVHAANP 574

Query: 580 KV-GPV--QEKDKFISYLTQMM 598
            V GP+  Q + +    L Q M
Sbjct: 575 AVAGPLAEQARPRITQELVQAM 596


>gi|16763833|ref|NP_459448.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|161615353|ref|YP_001589318.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167551732|ref|ZP_02345485.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167990436|ref|ZP_02571536.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231441|ref|ZP_02656499.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168240281|ref|ZP_02665213.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168261111|ref|ZP_02683084.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168818936|ref|ZP_02830936.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194442454|ref|YP_002039695.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194448749|ref|YP_002044487.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194469679|ref|ZP_03075663.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197262652|ref|ZP_03162726.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|200390757|ref|ZP_03217368.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|207855932|ref|YP_002242583.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|16418959|gb|AAL19407.1| peptidyl prolyl isomerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161364717|gb|ABX68485.1| hypothetical protein SPAB_03124 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401117|gb|ACF61339.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194407053|gb|ACF67272.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194456043|gb|EDX44882.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197240907|gb|EDY23527.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|199603202|gb|EDZ01748.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205323503|gb|EDZ11342.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205330915|gb|EDZ17679.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333949|gb|EDZ20713.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205340141|gb|EDZ26905.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205344153|gb|EDZ30917.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205350111|gb|EDZ36742.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206707735|emb|CAR32020.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261245735|emb|CBG23532.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992168|gb|ACY87053.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301157063|emb|CBW16547.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911485|dbj|BAJ35459.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084726|emb|CBY94517.1| putative protease maturation protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321226030|gb|EFX51081.1| Peptidyl-prolyl cis-trans isomerase ppiD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322713525|gb|EFZ05096.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323128772|gb|ADX16202.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987401|gb|AEF06384.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 623

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 140/650 (21%), Positives = 290/650 (44%), Gaps = 52/650 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q++  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P F   D KF ++ + + + + G+      D Y + L         + G+  +
Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172

Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           + +L    D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R
Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D    +  +  S+ ++QA Y+++ +++  PE      +    + +A     +L 
Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290

Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           KG+ F  LA+E+   +     G           +P++  A     L +KG  + VI  S 
Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404
           G+++A + +I+P+      EV+ DIA +++     EK  + Y  L++ ++   S D   +
Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463
           +  E++  +      +  +D   +E+   P  + +    + G++     +  +   DG  
Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462

Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V++ E  P   + L EV   V    K  K  ++    A +L++E  K GK    + K
Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577
             G S      ++R          D +SQ     S P +    + + N +  + V+    
Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573

Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|213622668|ref|ZP_03375451.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 599

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 133/626 (21%), Positives = 276/626 (44%), Gaps = 52/626 (8%)

Query: 25  FLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV 83
           F++ G+S  L  + GS+   + V  Q++  + F N++  E   + Q++G    SE A + 
Sbjct: 1   FILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENAFNNERNRMQQQLGDRY-SELAANE 57

Query: 84  G----LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           G    L +++L+ L+  A LDQ+  ++ L     +V   I  +P F   D KF ++ + +
Sbjct: 58  GYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQAIFATPAFQ-VDGKFDNNRYNA 116

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFYFENRSVDYI 195
            + + G+      D YT+ L         + G+  ++ +L    D+      + R V   
Sbjct: 117 IVNQMGMT----ADQYTQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREA 172

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
           V++   + A    ++  ++ ++++ K  +  PE  R+SYI  D    +  +  S+ ++QA
Sbjct: 173 VIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLDAATMQAPV--SDADIQA 230

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS- 314
            Y+++ +++  PE      +    + +A     +L KG+ F  LA+E+   +     G  
Sbjct: 231 YYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGD 290

Query: 315 ----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                    +P++  A     L +KG  + VI  S G+++A + +I+P+      EV+ D
Sbjct: 291 MGWLEESATVPELKNA----GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDD 346

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRREKIVSIDLPLVDFAGKDVKGK 428
           IA +++     EK  + Y  L++ ++   S D   ++  E++  +      +  +D   +
Sbjct: 347 IAAKVK----QEKALDAYYALQQKVSDAASNDNESLAGAEQVAGVKAVETGWFSRDTLPE 402

Query: 429 EVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMW-VQIKESIPARDRKLEEVLTDV 486
           E+   P  + +    + G++     +  +   DG   + V++ E  P   + L EV   V
Sbjct: 403 ELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQV 462

Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
               K  K  ++    A +L++E  K GK    + K  G S      ++R          
Sbjct: 463 TALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQ------- 513

Query: 547 DGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMN 599
           D +SQ     S P +    + + N +  + V+      K G  P  +K   +  +TQ   
Sbjct: 514 DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQKKAMVQGITQNNA 573

Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQR 625
           + + +++++ L+ +  + + D L Q+
Sbjct: 574 QIVFEALMSNLRKEAKIKIGDALEQQ 599


>gi|114330677|ref|YP_746899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
 gi|114307691|gb|ABI58934.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
          Length = 630

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/391 (21%), Positives = 178/391 (45%), Gaps = 21/391 (5%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           + +I L +  +PFL WGL ++   +  +S V SV  +++    +  + + +   +   +G
Sbjct: 11  IVQIVLFIALLPFLFWGL-ESYQGMGSASDVASVDGEEISRQEYEQALRNQQENLRNMLG 69

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
              ++    S  +   +L+NL+    L      +GL     R+  EI    LFH +D+KF
Sbjct: 70  ENFDASLLDSPQMRMAVLENLIQQKLLRHEAGRVGLAVLDSRLTAEIQNIALFH-EDDKF 128

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           S++ +   L R+G++   +       L R  ++    G +  S  + D+          +
Sbjct: 129 SYERYRELLQRQGMSPAMFEARLAGDLMRQQLLEGITGSVIVSKTVADRIASLSETKYEI 188

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
           + + +N       A+P  A +  +++ ++ ++  PE  RI Y++  + E  K+ +IS++E
Sbjct: 189 NRVTINPEQYINQAEPDEAAIQSYYDSHRQDFTLPERVRIEYVVLSLEELAKQEQISDEE 248

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-------------KFIQL 299
           ++  ++++++++   E R    ++     +A E  ++  K K             KF +L
Sbjct: 249 IKKYFDEHQDEFGRVEERRASHILLTVPVDATEEQKAAIKAKAEQILEQVKQDPDKFPEL 308

Query: 300 A----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A    E+ G + +   LG F++  +   +  D+ F +       PV    FG+ I  ++ 
Sbjct: 309 AKELSEDPGSAKAGGDLGFFARGLMVK-AFEDTAFEMQLDEIRGPV-ETPFGFHIIRLTA 366

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +K +    F EVK+ I   ++  KA+++  E
Sbjct: 367 VKDANVAKFDEVKEGIRQTLQRQKAADRFGE 397


>gi|322614730|gb|EFY11659.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618836|gb|EFY15724.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623543|gb|EFY20382.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322629158|gb|EFY25937.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631879|gb|EFY28633.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637384|gb|EFY34086.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322642069|gb|EFY38679.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647888|gb|EFY44363.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322653272|gb|EFY49605.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660579|gb|EFY56815.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664731|gb|EFY60924.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669216|gb|EFY65366.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322670761|gb|EFY66894.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322679000|gb|EFY75055.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682029|gb|EFY78054.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685142|gb|EFY81139.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323192964|gb|EFZ78187.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323196954|gb|EFZ82096.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203939|gb|EFZ88956.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323206976|gb|EFZ91929.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323214179|gb|EFZ98937.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214497|gb|EFZ99248.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219161|gb|EGA03658.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227003|gb|EGA11184.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230179|gb|EGA14299.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233917|gb|EGA18006.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238389|gb|EGA22447.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323244076|gb|EGA28085.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323246237|gb|EGA30220.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251863|gb|EGA35726.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257859|gb|EGA41538.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261127|gb|EGA44719.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264943|gb|EGA48442.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272506|gb|EGA55913.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 623

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 140/650 (21%), Positives = 290/650 (44%), Gaps = 52/650 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q++  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P F   D KF ++ + + + + G+      D Y + L         + G+  +
Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172

Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           + +L    D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R
Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKARFMTPEQFR 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D    +  +  S+ ++QA Y+++ +++  PE      +    + +A     +L 
Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290

Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           KG+ F  LA+E+   +     G           +P++  A     L +KG  + VI  S 
Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404
           G+++A + +I+P+      EV+ DIA +++     EK  + Y  L++ ++   S D   +
Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463
           +  E++  +      +  +D   +E+   P  + +    + G++     +  +   DG  
Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEEMNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462

Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V++ E  P   + L EV   V    K  K  ++    A +L++E  K GK    + K
Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577
             G S      ++R          D +SQ     S P +    + + N +  + V+    
Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573

Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 574 EVKAGAMPEVQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|304413823|ref|ZP_07395240.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Candidatus
           Regiella insecticola LSR1]
 gi|304283543|gb|EFL91938.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Candidatus
           Regiella insecticola LSR1]
          Length = 623

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 187/401 (46%), Gaps = 30/401 (7%)

Query: 25  FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
           +L+ G +D    V+G    +S  + +  F S     +Q+LG   ++   + ++E   S  
Sbjct: 32  YLVGGANDYAAKVNGEK--ISQAKLEQAFQSERARMQQQLG---EQFSTLASNESYMS-K 85

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
           L ++ L+ L++   L+Q+ + +GL     +V   I + P F   DNKF +  +++ +   
Sbjct: 86  LRQQTLEQLINNVLLNQYTQKLGLTVSDEQVKESIRQIPYFQ-TDNKFDNTKYLNLINSM 144

Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFYFENRSVDYIVLNNR 200
           G       D + ++  +  ++   +  +  S  +L     +      + R V    ++  
Sbjct: 145 GYKP----DQFAQLQLQQLILQQLLQAVGSSEFILPMEMKKTAELVLQQRDVRLATIDVN 200

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
            + A    +N  L  ++ + K ++ AP   +ISYI  D+ E +KKI +S  E+++ Y+++
Sbjct: 201 ALQAHQKVTNTELKNYYHQNKKDFIAPAEIKISYIFMDMAEIQKKITVSEKEIESYYQQH 260

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS------LGS 314
           K  Y  PE +    +    +KEA      LK G  F  LA++  KS+  IS      LG 
Sbjct: 261 KNNYIQPERKHFSVIQLKTEKEAQAILAELKTGADFATLAKQ--KSVDIISRKNGGTLGW 318

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
                  D  L  +  +L +KG  + VI  S GY+I  +++IKP  + +F+EV+ ++  +
Sbjct: 319 LEASMTLD-ELKQA--NLTEKGQLSDVIKSSVGYLIVRLNDIKPEQSRAFKEVRTELLKK 375

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           ++     EK  + Y  L++ ++   + +  S     V+ DL
Sbjct: 376 VQ----QEKTLDAYYALQQQVSTAAANNNDSLASAEVAADL 412


>gi|260912811|ref|ZP_05919297.1| peptidyl-prolyl cis-trans isomerase D [Pasteurella dagmatis ATCC
           43325]
 gi|260633189|gb|EEX51354.1| peptidyl-prolyl cis-trans isomerase D [Pasteurella dagmatis ATCC
           43325]
          Length = 625

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 177/392 (45%), Gaps = 29/392 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + +WV+K+ L ++ V F++ G++  +F+ +  ++V  V  +++   +F   +
Sbjct: 2   LIEKLHSITNSWVSKLVLGLIAVAFVLSGITGYVFT-NVDTSVAKVNGEEITQQAFHQRY 60

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   ++Q++G     V   +     L + +L++LV+   L Q+  D+ L     R+  
Sbjct: 61  ESEFERLNQQLGSQFAAVAGSKGFVSNLRQSVLNSLVNQELLRQYANDLKLAVSDERIKQ 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI  S LF   D KF ++++  RL   G+N   Y  +  + L R D       G+  S  
Sbjct: 121 EIVTSELFQ-TDGKFDNNLYQRRLQLNGMNADMYAAYVGEAL-RLD---QLQSGLAESAF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            +    DQ    +F+ R +     + +   A    +   +  +++  K  +  PE  ++ 
Sbjct: 176 SVPAQQDQLTELFFQTRKLRLAKFDLKDEIAQQQVTEEEIKAYYDANKSAFSVPELAKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI     + EK I++++ E+   Y+ NK  Y S   + +  +    +++A E + +L+ G
Sbjct: 236 YIELTRADVEKNIQVTDVEIAQYYQDNKALYVSQGQQRISHIELATEQDAQEVYAALQDG 295

Query: 294 KKFIQLAEEQ---------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             F  LA  +         G  LS +S G   K +  D + A  +      G F+  +  
Sbjct: 296 ANFAGLASARSLDKISAANGGDLSWLSAGGLPKAF-EDAANALEV------GKFSQPVKV 348

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
              Y I  V++ K +  +    VK  IA+Q+R
Sbjct: 349 DSHYHIILVTDRKSAEALPLSVVKTQIADQIR 380


>gi|24373364|ref|NP_717407.1| peptidyl-prolyl cis-trans isomerase D [Shewanella oneidensis MR-1]
 gi|24347627|gb|AAN54851.1|AE015624_4 peptidyl-prolyl cis-trans isomerase D [Shewanella oneidensis MR-1]
          Length = 621

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 120/538 (22%), Positives = 233/538 (43%), Gaps = 52/538 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S+  +AK  LV++ + F   G+S  L S S       V   K+  +    ++
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSTS-EVPAAEVNGDKITKAELEQAY 59

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G  F   S   R +  + + +L+ LV+   +DQ    +GL     ++  
Sbjct: 60  QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF ++ + + L + G   + +       ++R  +    VG      +
Sbjct: 120 AIKSEPAFQ-TDGKFDNERYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVG---TEFV 175

Query: 178 LLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           L  +AK+      + R + Y+V+++    A A  ++  +  +++  +  + +PE   + Y
Sbjct: 176 LPGEAKQLAELQGQTRDIRYLVVDSAPFLAKASVTDEQVKSYYDANQGQFMSPEKVSLEY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------------- 278
           +  +  +  K  +++++E Q  Y+++K +Y S E R    ++                  
Sbjct: 236 VELNAADFAKDSKVTDEEAQTYYDEHKAQYVSNEKRLAAHILIALGSDEAAAKAKAEDLA 295

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
            Q +    F +L K      L+ EQG  L     G      + D +   ++F+L +KG  
Sbjct: 296 KQLDNGADFAALAKANSEDTLSAEQGGKLDWFEPG------VMDPTFDTALFAL-QKGQH 348

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
           + V+   FG+ I  + +I+P  TV F +VK  I  Q++  KA ++    +  L+  LA  
Sbjct: 349 SGVVKTDFGFHIIKLLDIQPGTTVPFADVKTKIFAQLQEKKAVDQ----FYSLQSKLA-D 403

Query: 399 TSM---DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--- 452
           TS    D ++   K+V +++       +D    +V A   K  ++   F   DP+ +   
Sbjct: 404 TSYEVPDTLAETAKVVGVEIKTTPLFSRD----DVPAALNKPDVVKAAFS--DPVMRQGL 457

Query: 453 -DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
               + L     + +++KE   A    L EV  D+ +  K  +  E   +KA +L+ +
Sbjct: 458 NSEVIELEPNHVVVIRMKEHHDAGTMPLAEVKADIAERLKQEQANEAARAKAEELMAQ 515


>gi|320540341|ref|ZP_08039993.1| putative peptidyl-prolyl cis-trans isomerase (rotamase D) [Serratia
           symbiotica str. Tucson]
 gi|320029661|gb|EFW11688.1| putative peptidyl-prolyl cis-trans isomerase (rotamase D) [Serratia
           symbiotica str. Tucson]
          Length = 628

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 168/365 (46%), Gaps = 24/365 (6%)

Query: 25  FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG----MISQKIGFVVNSERA 80
           +LI G  D    V+G   V+   + +  F S     +Q+LG    +++   G++   +R 
Sbjct: 33  YLIGGFGDYAAKVNGQ--VIERAQLEQVFQSERQRMQQQLGDQFSVLAGNEGYM---QRM 87

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
           R     +++L  L+    L Q+ + +GL     ++   I ++P F   D +F +  ++  
Sbjct: 88  R-----QQVLSQLIDNMLLAQYAKKLGLSVSDEQIKNAIRKTPYFQ-TDGQFDNAKYLDL 141

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQA-KRFYFENRSVDYIVL 197
           L   G    ++     + L    V   F   G M P+     QA      + R+V    +
Sbjct: 142 LGSMGYTVDDFAQSMRQQLVNQQVTQAFGESGFMLPAE---SQAMAALLLQQRNVRLATI 198

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
           +   + A  + S+  L  ++++ ++++ APE  ++SYI  D    + K+++S+ ++ A Y
Sbjct: 199 DLSALQAKQNVSDDELKAYYQQNQNSFIAPEQIKVSYISIDAVSMQDKVKVSDTDISAYY 258

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
           +++K  Y  PE +    +    + EA+     LKKG  F  LA+++   +     G    
Sbjct: 259 DRHKSSYGQPERKNYSVIQLKTETEANAVLSELKKGGDFATLAKDKSTDIISRRTGGELG 318

Query: 318 EYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              P+ + AD +    L +KG  + V++ S GY+I  +++I+P       +V + IA Q+
Sbjct: 319 LLEPETT-ADELKQAHLTEKGQLSSVVNSSIGYLIVRLNDIEPEKMKPLSDVHETIAKQV 377

Query: 376 RITKA 380
           R  KA
Sbjct: 378 RREKA 382


>gi|40062782|gb|AAR37676.1| peptidyl-prolyl cis-trans isomerase, putative [uncultured marine
           bacterium 439]
          Length = 613

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 169/373 (45%), Gaps = 12/373 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IRK S+ WVA + + ++ VPF ++G+ + +   S +S V SV  + +    +    
Sbjct: 1   MLGAIRKKSKGWVAYLIVGLITVPFALFGIQEYMGG-SSNSAVASVDGEDISLDYYYQKL 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   ++E   +  L + ++D+L++   L+ F   + L      V   I 
Sbjct: 60  NTQQRNLQQQLGASYSAEIDNA--LRQTLIDSLINEKLLENFTNSMKLVTLEEEVRSFIQ 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P+F   D  FS + ++  L   G     Y    +K +S   +          S + +D
Sbjct: 118 SNPVFQ-VDGVFSEERYIQLLRLNGFTPLAYELEQSKSMSLDQIKRNLNNSAFLSTVQID 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q      + R V ++VL+              ++++F+  K N+      ++ ++   + 
Sbjct: 177 QLNDLSAQERDVSFLVLSTEKYKEQIIVDQDQISEYFDNNKSNFIEGHKVQVDFVELSLD 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
             E++    N+ L+  Y +N+E Y + E R  + ++   +  A    + +K+G  F +LA
Sbjct: 237 NIEQQTNPDNETLRKLYVENEELYTNSEQRRAQHILLEEESNARAILKEIKEGGDFSELA 296

Query: 301 EEQGKSLSDIS----LGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
               K ++       LG F +E  +P+   A  +F +   GD + V+   +GY I  ++ 
Sbjct: 297 RIHSKDITTSEEGGDLGLFERELMVPEFDKA--VFDM-DVGDISEVVKTDYGYHIIKLNE 353

Query: 356 IKPSFTVSFQEVK 368
           I+PS   SF+EV+
Sbjct: 354 IQPSTLQSFEEVE 366


>gi|261210559|ref|ZP_05924852.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC341]
 gi|260840344|gb|EEX66915.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC341]
          Length = 619

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 115/519 (22%), Positives = 229/519 (44%), Gaps = 22/519 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   K+ L ++ + F+  G+ + L S  G++T   VG+ ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKVILGLIILSFIFAGVGNYLIS-GGNNTAAKVGKAEISRGDFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++        K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDQQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175
            I   P F  +  +F  +++ + L R G     + ++  K L R  ++    G     P 
Sbjct: 120 MILEMPQFQSQ-GQFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMSALQGSEFSLPG 178

Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + L DQ      + R +  I L+          S+  + Q+++   + +  PE  ++SY
Sbjct: 179 EVNLQDQ---LISQTRDIRTITLSLADFAKKVTLSDDDIQQYYKANTERFTRPEQMKVSY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKK 292
           +       +K+I I ++  Q  Y+++ +KY + E R V  ++    ++++A      L  
Sbjct: 236 VELSADALKKQIMIDDEAAQEYYQEHLDKYSTAEQRKVSHILVEGSDEQKAQAILDELNA 295

Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  +A+E+    G +    SLG   ++ + D +   + F+L + G  + ++   FGY
Sbjct: 296 GADFATVAKEKSQDVGSAQEGGSLGWIERDTM-DPAFEAAAFALTENGQISGLVKSEFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I  +  +K      + EV + I  ++   +A +        LE+ LA   S D +    
Sbjct: 355 HIIRLDEVKAPVVKPYSEVVEAIKQELIDQQALDTFYAKQSELEK-LAFEHS-DSLDEAA 412

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
           K +S  +   DF   + +  E+ A P   Q+L     K+D L+ +     P+   + V++
Sbjct: 413 KAISATVEHTDFISAE-QAPELLATPAVLQVLKTPEVKEDGLNSEVIEVAPE-HVVVVRV 470

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           +ES P     LEEV   V +    +K  ++     NQLV
Sbjct: 471 EESRPETVLPLEEVKPQVVEQLSRMKGEQQALELGNQLV 509


>gi|126731274|ref|ZP_01747081.1| hypothetical protein SSE37_06394 [Sagittula stellata E-37]
 gi|126708185|gb|EBA07244.1| hypothetical protein SSE37_06394 [Sagittula stellata E-37]
          Length = 615

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 95/484 (19%), Positives = 211/484 (43%), Gaps = 19/484 (3%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           S++  VG  ++P S +  + +QE+  +  + G  ++ ++AR++G+   +L  +V+ A L+
Sbjct: 37  SSIGKVGEAEIPASDYFRAMQQEIRAVQTQTGQALSMQQARAMGIPDMVLSRVVTTAALE 96

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
                +G+     R+  ++   P F G D  F  + +   L   G +E+E+ +      +
Sbjct: 97  NEAAQLGISVGDERLAQDLREIPAFQGIDGSFDRESYRLALQGAGFSEREFEEQLRAESA 156

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEK 219
            T +      G+    +       +  E R+  +  L +  +   +  P++  L  ++++
Sbjct: 157 STLLQNAIQAGVALPPVYAQTLVSYTGERRAFTWAELGSEQLSTGLPIPTDEELQTFYDE 216

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
             D Y  P  ++I+Y           +E+  D L+A Y++   ++  PE R VE+LV+ +
Sbjct: 217 NIDRYTRPTTRKITYAWLTPAMIVDTVEVPEDMLRATYDERSSEFNLPERRLVERLVYSS 276

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           ++ A +A   +  G   F  L  E+G  ++D  +G  ++  +   +  +++F+ A+ GD 
Sbjct: 277 EEAAQDAAARVANGDVPFETLVRERGLDIADTDMGDVTEASLG--AAGETVFA-AEVGDV 333

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
                   G  +  V+ +  +   SF+E    + + + + +A   ++    +L++ LA G
Sbjct: 334 VQA-PSDLGPALYRVNAVLAAQDTSFEEAIPQMRDTLALAQARRVIEGLANQLDDELAAG 392

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            ++++++       ++L  +D+      G  +A               D P        L
Sbjct: 393 ATLEDLA---GDTEMELGQIDWTSASSDG--IAGYEAFNTAAAEAETGDYP----AIAEL 443

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDW----KTVKTAEEVSSKANQLVLEYSKEG 514
            DG    +++ E   A      +V   V++DW    +    A++  + ANQL  +   + 
Sbjct: 444 GDGGLFALRLDEIQEAAPYPFADVRARVEQDWEADARATALADQAEALANQLSGDTGFDD 503

Query: 515 KNFR 518
            N R
Sbjct: 504 LNLR 507


>gi|254439696|ref|ZP_05053190.1| hypothetical protein OA307_4566 [Octadecabacter antarcticus 307]
 gi|198255142|gb|EDY79456.1| hypothetical protein OA307_4566 [Octadecabacter antarcticus 307]
          Length = 619

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 168/392 (42%), Gaps = 10/392 (2%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           I L +LFV  + +G S     +SG+  ++ +VG + +    +    + ++ + S + G  
Sbjct: 18  IILGLLFVGLMGFGAS----GLSGNLQSIGAVGDKTLSAQRYFQELQTQIRIGSSQAGRT 73

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           ++   A+S  L  + L  +V+  +LD     +GL      V  ++     F G D  F  
Sbjct: 74  ISFPEAQSAQLPDRALQIVVAERSLDNEAAVLGLSVGDSVVSQQVLGDLNFRGFDGTFDR 133

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
             +   L+R G+N +EY     +  +R  +      G+       D   +F  E R+  +
Sbjct: 134 TTYRETLSRNGMNVREYETGLREGAARALLQSAVYAGVPDPATYGDTVAKFVREGRTFTW 193

Query: 195 IVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
             L    +   + +PS A L   ++   D Y + E + + +        +  + +  DEL
Sbjct: 194 APLTATDIEITLPEPSEADLQAHYDANPDIYTSLETRVLRFAWITPAMIQDDMPVDEDEL 253

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLSDISL 312
           +AEY+   +++   E R +E+L+F N   A  A  ++  G   F QL  ++G SL D+  
Sbjct: 254 RAEYDDRIDEFVQAERRLIERLIFSNDAAAQTALDAINAGDTTFPQLVADRGLSLEDVDG 313

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           G  +   + D      +F+ ++ GD +       G  +  ++ +  +   +F++   D+ 
Sbjct: 314 GDVTLAELGDAGA--GVFA-SQTGDVSGPFMTDLGPALFRMNAVLAAQNTTFEDALPDLR 370

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
                 +A   +++    +   LA G S+D +
Sbjct: 371 EDQSAARARRVIEDQIDPITNLLAGGASLDNL 402


>gi|117921098|ref|YP_870290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
 gi|117613430|gb|ABK48884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
          Length = 621

 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 120/539 (22%), Positives = 232/539 (43%), Gaps = 54/539 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S+  +AK  LV++ + F   G+S  L S S       V   K+  +    ++
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSKS-DVPAAEVNGDKITKAELEQAY 59

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G  F   S   R +  + + +L+ LV+   +DQ    +GL     ++  
Sbjct: 60  QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +D + + L + G   + +       ++R  +    VG      +
Sbjct: 120 AIKSEPAFQ-TDGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVG---TEFV 175

Query: 178 LLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           L  +AK+      + R + Y+V+++    A A  ++  +  +++  +  + +PE   + Y
Sbjct: 176 LPGEAKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPN-------------- 279
           +  +  +  K  +++++E QA Y+++K +Y S E R     L+ P               
Sbjct: 236 VELNAADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAAAKAKAEDLA 295

Query: 280 -QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
            Q +    F  L K      L+ EQG  L     G      + D S   ++F+L +KG  
Sbjct: 296 KQLDNGADFAELAKANSEDTLSAEQGGKLDWFEPG------VMDPSFDTALFAL-QKGQH 348

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
           + V+   FG+ I  + +++P  TV F +VK  I  Q++  KA ++    +  L+  LA  
Sbjct: 349 SAVVKTDFGFHIIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQ----FYSLQSKLA-D 403

Query: 399 TSM---DEISRREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDPL 450
           TS    D ++   K+V +++       +D     +   +V    + + +L +    +   
Sbjct: 404 TSYEVPDTLAETAKVVGVEIKATPMFSRDDVPTALNKPDVVKAAFSDTVLRQGLNSE--- 460

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
                + L     + +++KE   A    L EV  D+ +  K  +  E   +KA +L+ +
Sbjct: 461 ----VIELEPNHVVVIRMKEHHDAGTMPLAEVKADIAERLKQDQANEAARAKAQELMTQ 515


>gi|120599410|ref|YP_963984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|146292594|ref|YP_001183018.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|120559503|gb|ABM25430.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|145564284|gb|ABP75219.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|319425896|gb|ADV53970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens 200]
          Length = 618

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 141/659 (21%), Positives = 272/659 (41%), Gaps = 85/659 (12%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57
           MLE IR  S+  +AK  LV++ + F   G+S  L    GS+T V    V   K+  +   
Sbjct: 1   MLEKIRDGSQGVIAKSILVLVILSFAFAGVSSYL----GSTTDVPAAEVNGDKITKAELE 56

Query: 58  NSWKQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +++ E   + Q++G  F   S   R +  + + +L+ LV+   +DQ    +GL     +
Sbjct: 57  QAYQSERSRMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAASTMGLRVSDEQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--M 172
           +   I   P F   D KF ++ + + L + G   + + +     ++R  +    VG   +
Sbjct: 117 IITAIKLEPAFQ-TDGKFDNERYQAILRQLGYQPQSFRNMMRVDMTRRQLTAALVGTEFV 175

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            PS     Q      + R + Y+V+++    A A  ++  +  +++  +  + +PE   +
Sbjct: 176 LPSEA--KQLAELQGQTRDIRYLVVDSAPFLANATVTDEQVKNYYDANQGQFMSPEQVSL 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEA 286
            Y+  +  +  K   ++++E QA Y+++K +Y + E R    ++          K AD A
Sbjct: 234 EYVELNAADFAKNSPVTDEEAQAYYDEHKTQYLANEKRLAAHILINADQDDAATKAADLA 293

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIH 343
            Q L  G  F +LA+           G   + + P V   +   ++F+L  KG+ + V+ 
Sbjct: 294 KQ-LDNGADFAELAKAHSDDRLSAEQGGKLEWFEPGVMEPTFDAALFAL-NKGEHSAVVK 351

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM-- 401
             FGY I  + +++   TV F +VK  I  Q+          +D K +++F +L + +  
Sbjct: 352 TGFGYHIIKLLDVQAGATVPFADVKAKIVAQL----------QDKKAVDQFYSLQSKLAD 401

Query: 402 ------DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KD 453
                 D ++   K++ + +       +D   + +     K  L+   F     L     
Sbjct: 402 TSYEVPDTLAETAKVLGVSIKTTPLFSRDDAPEGL----NKPDLVKAAFSDTVKLKGLNS 457

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
             + L     + +++KE   A    L EV  ++ +  K  +  E   +KA +L+ +    
Sbjct: 458 EVIELEPNHVVVIRVKEHHDAGTLALAEVKANITERLKQDQANEAARAKAQELMTQVKAA 517

Query: 514 GKNFRDIGK--------NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
             +   + K        N+ A+++            K F     S   S PV  V    +
Sbjct: 518 ATDLGLVSKVKLGRGEQNVDAAIV-----------GKAFQMPTPS---STPV--VDIVGL 561

Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN--------KDLLDSVIAYLKSQYSV 616
            NG + +     N+  G     D+ ++ L Q +N        + L+DS+ A  K  YS 
Sbjct: 562 ANGYAVIALDKVNAAEGV---SDELVNALKQRLNAQYSEADYRGLIDSLKANAKVVYSA 617


>gi|198244647|ref|YP_002214406.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197939163|gb|ACH76496.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 623

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 140/650 (21%), Positives = 289/650 (44%), Gaps = 52/650 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q +  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQGISRAQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P F   D KF ++ + + + + G+      D Y + L         + G+  +
Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172

Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           + +L    D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R
Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D    +  +  S+ ++QA Y+++ +++  PE      +    + +A     +L 
Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290

Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           KG+ F  LA+E+   +     G           +P++  A     L +KG  + VI  S 
Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404
           G+++A + +I+P+      EV+ DIA +++     EK  + Y  L++ ++   S D   +
Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463
           +  E++  +      +  +D   +E+   P  + +    + G++     +  +   DG  
Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462

Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V++ E  P   + L EV   V    K  K  ++    A +L++E  K GK    + K
Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577
             G S      ++R          D +SQ     S P +    + + N +  + V+    
Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573

Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|82703453|ref|YP_413019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
 gi|82411518|gb|ABB75627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
          Length = 626

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 129/650 (19%), Positives = 269/650 (41%), Gaps = 49/650 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + + K  R  + +I L +  +PF+ WG+     + +G    ++ G +K+    F  + 
Sbjct: 1   MFDFVNKKRR--IVQIILGLATLPFVFWGVESYRNADAGDHVALAAG-EKISRQEFEQAL 57

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   +   +G   +        +   IL+ L+    L Q    +GL     ++   I 
Sbjct: 58  RNQQENMRATLGENFSPALLEKPEVRAAILEGLIQQRLLRQEASRVGLGVADAQLIEMIQ 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
              LF  +D  FS   +   L  +G+N + +     + L R  +V  F      S+ + +
Sbjct: 118 NIDLFQ-EDGNFSKQRYEEWLRNQGMNARAFEARLRQDLMRQQLVDPFSKNAFISHSVAE 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  R   E R V  + +      A   P N  +  ++E +K  ++ PE  R+ Y++  + 
Sbjct: 177 RILRLGDEKREVRVVQIQPEQFLANVKPGNDAIRAYYEAHKAEFQVPEQARVEYVVLSMD 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAFQSL 290
              +K +++ DE  A YE++K ++  PE R    ++             + +A+E    +
Sbjct: 237 ALAEKAQVTADEALAYYEEHKHEFGQPEERRASHILISAPASASDRATARAKAEELLAEV 296

Query: 291 KKG-KKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           +K  ++F +LA++     G + +   LG F++  +   S  D++F + K G+ + ++   
Sbjct: 297 RKSPQRFTELAKQHSQDPGSAPTGGDLGFFARNMMTK-SFEDAVFRM-KPGEISDIVETE 354

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL-ALGTSMDEI 404
            G+ I  ++  +     S +EVKK +  ++R  KA++   E        +     S+  +
Sbjct: 355 HGFHIILLAEARGGKQASLEEVKKQVEQEVRKQKAAKTFGEMADSFSNMVYEQSDSLKPV 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPY--KEQLLFRVFGKDDPLSKDHTVALPDGS 462
           +      S+ L + +     +   E    PY    +LL  +F +D    K +T A+   S
Sbjct: 415 AE-----SLGLTIQESGWIRMNSDEP---PYLNNARLLQAIFSEDAIKDKRNTEAIEVSS 466

Query: 463 YMWVQIK--ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
              V  +  +  PA    ++E+     +D      A E +S+A    +   KE       
Sbjct: 467 NTLVSARVVDYKPAATPSVDEL-----RDKIAALVAREEASRA---AINEGKEQLAQLQQ 518

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP----IENGLSYV-VFK 575
           GK          Q++R   E + F  + +  +F      +  +      + G + + V +
Sbjct: 519 GKTAPIKWTPGQQVSR--RERQGFDNETVQAIFRAETNHLPAYSGLPNAQGGFTLIRVDR 576

Query: 576 VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           V  S+    +E+  F   L+Q+  ++   S +  +K +Y V+V    +++
Sbjct: 577 VIESRPPSAEERKTFAGQLSQLFAQEEFSSYLDGIKKRYDVSVRSESLEK 626


>gi|15603844|ref|NP_246918.1| hypothetical protein PM1979 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12722418|gb|AAK04063.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 626

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 119/528 (22%), Positives = 230/528 (43%), Gaps = 47/528 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + +WV+K  L ++ V F++ G++  +F+   +S V  +  +++   +F   +
Sbjct: 2   LIEKLHGMTNSWVSKFLLGLIAVAFVLSGITGYVFTRVDTSAV-KINGEEISQQTFYQRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G  F   S     V GL + +L+NL++   L Q+ +++ +     RV  
Sbjct: 61  ESESERLRQQLGAQFAALSGSPEFVAGLRQSVLNNLINQELLRQYADELKIGISDERVKQ 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI  S  F  ++ KF + ++   L   G+      D Y  ++     +     G+  S  
Sbjct: 121 EIVTSQFFQ-QEGKFDNALYQRMLQLNGLTP----DAYANIVREGLRLEQLQTGLAESEF 175

Query: 178 LLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++     Q    +F+ R+V     +   V      S+  ++ ++E  K  +  PE  ++ 
Sbjct: 176 IVPAQQAQLTELFFQARTVRLAPFSLDQVLEKQTISDEEVSAYYEANKGAFLVPELAKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           Y+     + EK I++S+ E+   Y+ NK  Y S   + +  +    + EA E +Q+L+ G
Sbjct: 236 YMTLTRADVEKHIQVSDVEIAQYYQDNKALYVSQGQQRLSHIQVATEAEAKEIYQALQDG 295

Query: 294 KKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             F  LA          E G  LS  S G+F K +       +   +  + G F+  +  
Sbjct: 296 ANFAGLASARSLDKISAENGGDLSWASAGTFPKAF-------EEAANALQVGQFSQPVKV 348

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT--SMD 402
              + I  V+  K   T+  + VK  IA+Q+R       V   Y  +E+ LA       +
Sbjct: 349 DDQFHIILVTERKEPSTLPLEVVKTQIADQIR----QNLVNNQYFSIEKQLAEKAFEHPE 404

Query: 403 EISRREKIVSIDLPLVDF-AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP-- 459
            + +  ++  + +   DF +  DV     AA+ Y   ++  +F  D  +S+    + P  
Sbjct: 405 GLEKAAEVAGLTIQETDFFSANDVP----AALNYPN-VISAIFHSD--ISQGGVNSEPMN 457

Query: 460 --DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
             +   + V++  + P   R LEE   D+    K  K  E V ++ANQ
Sbjct: 458 VGEQHAVLVRVIANKPEGTRSLEEAKADIISYLKRQKAEEIVLAEANQ 505


>gi|117925439|ref|YP_866056.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp.
           MC-1]
 gi|117609195|gb|ABK44650.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp.
           MC-1]
          Length = 636

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/431 (22%), Positives = 188/431 (43%), Gaps = 39/431 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML ++RK++ +WV KI L+++ V F +WG+ + L +    + V++V            +W
Sbjct: 1   MLNVMRKSANSWVIKILLILIAVSFSVWGI-EGLRNAGRDTPVLTV-----------ENW 48

Query: 61  KQELGMISQKIGFVVNSERAR--SVGLDKKILDNLVSGATLDQFIED---------IGLE 109
               G I Q     +  ++ R  ++ LD  ++   +    L + +++         +GL 
Sbjct: 49  SASQGYIRQSFDRFLREQKQRLGNLPLDNPMIRQQLRQQFLQRMVDEQLMLHSAMQMGLT 108

Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
                +   IA  P F  K  KF   ++   L +  ++ K +        +R  +     
Sbjct: 109 LSPKGLQKTIAEDPTFQLK-GKFDDALYRQLLRQNRLDPKTFEQDTLVRHARAHLAQGLT 167

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
                  LLLD A +   E R V  ++L+   + ++ DP +  L  + E  +D Y   + 
Sbjct: 168 QVATTPTLLLDDALKQESEKRRVALLMLDQATLASVDDPGDEALRAYQENNRDAYSIKQR 227

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-----------FP 278
            ++ Y+L D      ++++   ++ A Y+ NK  Y + E R +  ++             
Sbjct: 228 VKVRYLLLDAESVRDELKVDEAKIIAYYDDNKPLYKTLESRKLRHILAKFKAGDATAKAA 287

Query: 279 NQKEADEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            QK+ ++A Q +  G+ F ++A+   E   +     LG F +         ++ F+L  +
Sbjct: 288 AQKKIEDAKQRIANGESFAEVAKLLSEDVTASQGGELGVFQRGGGLVERFEEAAFTLP-E 346

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G  + V+   FG+ +  V +I P+ T SF++VK +IA Q+    A E +      LE+ L
Sbjct: 347 GKVSEVVESPFGFHLILVDHIDPAGTRSFEQVKPEIAEQLFQEGAGEAIYSKSIALEDML 406

Query: 396 ALGTSMDEISR 406
           A   S+  I +
Sbjct: 407 ATADSLATIGK 417


>gi|157804205|ref|YP_001492754.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia canadensis str.
           McKiel]
 gi|157785468|gb|ABV73969.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia canadensis str.
           McKiel]
          Length = 524

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 174/388 (44%), Gaps = 20/388 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  RK + +++ +I   ++   F+ +G+ D L    G   V     + +  + F+ + 
Sbjct: 1   MLDNFRKTADSFIMRILFAMIAFAFIGFGIQDVLNGRRGGDVVTFSHAKNISQADFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++ G  +  E    + +D ++L  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINAISKQTGTNLTDEEIAQLNIDNRVLKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  K   F   +F +      ++E++Y+ ++ +   +   VG F         + D
Sbjct: 121 ESPVFKNKQGVFDIKIFKTYFRNSYMDEEKYLSNFKEKALKNIFVGTFAESFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ + ++ ++ P    I  P++  L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELVQIDLQNKPQDLQIPTPTDQQLKDFYQDNKTLFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287
           ++  K+ K+ ++ DEL   Y +NK+++ +    TV++ +            N + A +  
Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGNQSFETVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHG 344
                G   +++AE+    + +++  S++ E I D  +   ADSIF L++     P+  G
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYVSYA-ELIEDKIIAENADSIFELSEGELSYPIEAG 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371
              Y+I   + +I+P     F  +K+ +
Sbjct: 358 DKSYLILVELKSIQPVKIPEFDSIKEQV 385


>gi|197248545|ref|YP_002145433.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197212248|gb|ACH49645.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 623

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 140/650 (21%), Positives = 289/650 (44%), Gaps = 52/650 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q++  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P F   D KF ++ + + + + G+      D Y + L         + G+  +
Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172

Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           + +L    D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R
Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D    +  +  S+ ++QA Y+++ +++  PE      +    + +A     +L 
Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290

Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           KG+ F  LA+E+   +     G           +P++  A     L +KG  + VI  S 
Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404
           G+++A + +I+P+      EV+ DIA +++     EK  + Y  L++ ++   S D   +
Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463
           +  E++  +      +   D   +E+   P  + +    + G++     +  +   DG  
Sbjct: 403 AGAEQVAGVKAVETGWFSHDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462

Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V++ E  P   + L EV   V    K  K  ++    A +L++E  K GK    + K
Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577
             G S      ++R          D +SQ     S P +    + + N +  + V+    
Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573

Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|251790644|ref|YP_003005365.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Dickeya zeae
           Ech1591]
 gi|247539265|gb|ACT07886.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya zeae
           Ech1591]
          Length = 626

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 113/527 (21%), Positives = 232/527 (44%), Gaps = 38/527 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++   F++ G+ D L   SG      V  Q++  S      
Sbjct: 1   MMDNLRAAANNVVLKIILALIIGSFVLTGVGDYLIRGSGD-YAAKVNGQEITRSQLEQGV 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G     + +       L  ++L  LV    + Q+  ++GL     +V  
Sbjct: 60  QNERSRQQEMLGDNFSALAANEGYMQQLRGQVLSQLVDETLVVQYAHNLGLNISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +N+F ++ ++S++ + G+      D Y + L +  +    + G+  ++ 
Sbjct: 120 AIFSVPEFQ-TNNRFDNEKYLSQVRQLGLTP----DAYAQFLRKQLLTQQLIRGLGNTDF 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQ---------WFEKYKDNYRAP 227
           +L Q      E  ++  I   +R V  A  D    V +Q         ++++ K  Y AP
Sbjct: 175 VLQQ------ELDNLVAIAAQDRTVRTATIDLGARVKSQAVSDEEVKNFYDQNKARYLAP 228

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  ++SYI+ D      K ++  +++ A YE++K ++  PE +    +    + +A    
Sbjct: 229 EQFKVSYIMLDAASIMDKTKVDGNDIAAYYEQHKSEFTQPERKKYSVIQLKTEADAKAVL 288

Query: 288 QSLKKGKKFIQLAEEQGKSL-SDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHG 344
           + LKKG  F  LA+++   + S  + G     ++ D S  D I    L +KG  + V+  
Sbjct: 289 EQLKKGADFAALAKDKSTDIVSRRNGGDLG--WMDDGSTVDEIKQAGLKQKGQVSDVVKS 346

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD-- 402
           S GY+I  + +++        EV+ D++ +++     EK  + +  L++ L+   S D  
Sbjct: 347 SVGYLIIRLDDVQAQHVKELDEVRADLSEKVK----REKALDAFYSLQQKLSEAASNDNE 402

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDG 461
            ++  EK+ +I     D+  +D     +   P  + +L   + G++     +  V   +G
Sbjct: 403 SLASVEKVANIKSVQTDWFTRDNVPAALNFQPVTQAILGGSLVGENGTPGNNSDVISVEG 462

Query: 462 SYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
              +V ++ E  P   + L++V   V +  K  K  ++   +A +++
Sbjct: 463 DRAFVLRVTEHKPETTQPLDQVREQVVQSLKRQKAEQQAKVEAEKIL 509


>gi|205351763|ref|YP_002225564.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205271544|emb|CAR36362.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326626798|gb|EGE33141.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 623

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 140/650 (21%), Positives = 290/650 (44%), Gaps = 52/650 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q++  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNLLIDEALLDQYSRELKLGISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P F   D KF ++ + + + + G+      D Y + L         + G+  +
Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172

Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           + +L    D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R
Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D    +  +  S+ ++QA Y+++ +++  PE      +    + +A     +L 
Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290

Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           KG+ F  LA+E+   +     G           +P++  A     L +KG  + VI  S 
Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404
           G+++A + +I+P+      EV+ DIA +++     EK  + Y  L++ ++   S D   +
Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463
           +  E++  +      +  +D   +E+   P  + +    + G++     +  +   DG  
Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462

Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V++ E  P   + L EV   V    K  K  ++    A +L++E  K GK    + K
Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577
             G S      ++R          D +SQ     S P +    + + N +  + V+    
Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573

Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|51473990|ref|YP_067747.1| hypothetical protein RT0810 [Rickettsia typhi str. Wilmington]
 gi|51460302|gb|AAU04265.1| rickettsial conserved hypothetical protein [Rickettsia typhi str.
           Wilmington]
          Length = 526

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 182/403 (45%), Gaps = 25/403 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK S +++ ++   ++   F+ +G+ D L     +  V+    + +    F+ + 
Sbjct: 1   MLDNIRKTSDSFIMRVLFAMIAFAFVGFGIKDILNVRRNNDIVIFSHARNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++IG  +  E    + +D +IL +L+    LD  +    L+     +   + 
Sbjct: 61  SLEINAISKQIGKSLTDEEIIQLNIDNRILKSLIYNNILDYLVSYYDLDLGDDTIKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F      F   +F +      I E +Y+ ++ + + +  +V  FV        + D
Sbjct: 121 ESPIFKNAQGVFDIKIFKTYFRNAYIGEDKYLLNFKEQVLKNIIVSTFVKSFYVPKSMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ + L+ ++ P    I  P++  L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAERREVELLQLDLQNKPKDLQIHTPTDQQLKDFYQDNKAAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV----------FPNQKEADEAF 287
           ++  K+ KI I+ DEL A Y +NK+++       V+  +            N + A++  
Sbjct: 241 NI--KDLKISITQDELLAFYNENKDEFGDQSFEAVQTQLHDLFRAKKFDILNMEFANKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL-------ADSIFSLAKKGDFTP 340
             +  G   ++++E+    + +++  S++ E I D  +       ADSIF LA+     P
Sbjct: 299 DEIASGASLVEISEKYKLPIQNVNYLSYA-ELIEDNIIADNIAENADSIFELAEGELSYP 357

Query: 341 VIHGSFGY-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           +  G   Y ++  + +I+P+    F  + KD  N++ I +  E
Sbjct: 358 IEAGDKSYLLLVELKSIQPAKIPKFDAI-KDQVNEVWIKRNIE 399


>gi|91204986|ref|YP_537341.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii
           RML369-C]
 gi|91068530|gb|ABE04252.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii
           RML369-C]
          Length = 519

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 169/388 (43%), Gaps = 18/388 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IRK + +++ ++   ++   F+ +G+ D L    G   V     + +    F+ + 
Sbjct: 1   MLNNIRKTADSFIMRVLFAMIVFAFVGFGIKDVLHGRGGGDIVTFSHAKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS+++G  +  E    + +D +IL  LV    LD  +     +     V   + 
Sbjct: 61  SLEINAISKQVGVSLTEEEIAQLNIDNRILKRLVFENILDYLVSYYDFDISDDTVKNLVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F      F   +F +       +E++Y+ ++ +   +    G F+        + D
Sbjct: 121 ESPVFKNDQGIFDIKLFKTYFRNSYTDEEKYLVNFKEKALKNIFAGTFLDSFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ + +N ++ P    I  PS+  L  +++  K ++  PE +  SYI  
Sbjct: 181 NIVNYMAEKREVELVQMNLQNKPKDLQIPVPSDQELKDFYQNNKSSFEIPEKRSFSYIKV 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV----------FPNQKEADEAF 287
                +KKI+++ +EL   Y +NKE++       V++ +            N + A    
Sbjct: 241 TTENLQKKIQVTKEELLEFYNENKEEFGEQSFEDVQKQLREQVESQKIDILNMELAKNLE 300

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHG 344
             +  G   +++AE+    +++I+  S++ + I D  +   ADSIF L++     P+   
Sbjct: 301 DDVAAGSSLVEIAEKYELPINNINNISYA-DLIEDKIIAENADSIFELSEGELSYPIEAE 359

Query: 345 SFGY-VIAHVSNIKPSFTVSFQEVKKDI 371
              Y V+  + +I P+    F  +K+ I
Sbjct: 360 DKSYLVLVELKSINPAKIPEFDSIKEQI 387


>gi|218515978|ref|ZP_03512818.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli 8C-3]
          Length = 212

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 102/217 (47%), Gaps = 19/217 (8%)

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGS--YMWVQIKESI 472
           D  G D  GKEV  IP K+QLL   F    G D P        LP G+  Y+W  ++E  
Sbjct: 1   DATGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-------PLPIGNDGYVWFNVREVT 53

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           P RDR + EV     +DW   +   E++ KA++L  E  K G    DI   LG ++ + +
Sbjct: 54  PDRDRPIAEVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIATPLGIAVESKS 112

Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KD 588
            I R   ++   G  G+   FSGPV+ V      +  + ++ KVT     P  +    +D
Sbjct: 113 GITRS-TDDPVLGRAGVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTGDVLNNRD 171

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             ++ +      D+LD ++  L++QY   V+  L ++
Sbjct: 172 AQLTAMANAAGDDILDQMVNLLQTQYGAQVNQTLAEQ 208


>gi|292490923|ref|YP_003526362.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
 gi|291579518|gb|ADE13975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
          Length = 637

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/416 (20%), Positives = 185/416 (44%), Gaps = 34/416 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFI 57
           MLE IR  ++   A + + ++ +PF +WG+++  F   G +   SV  +++    F +  
Sbjct: 1   MLEAIRSRAQGIFAWVIVGLITIPFALWGINN-YFREGGEALAASVNGEEITTREFRAAF 59

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + Q+L  + ++ GF  + E        +++L+ L+    +     ++GL      +  
Sbjct: 60  QRYTQQLRFLMRE-GF--SEEMLDDPATKQRVLEGLIEQRLVLDAAGELGLGMSDSELSK 116

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY-----IDHYTKMLSRTDVVGMFVGGM 172
            I  +  F  +  +F    + S L  +G+    Y     +   ++ L+ T  +  F    
Sbjct: 117 VIHNNEAFQDETGQFDFQRYESVLNSQGLTTAAYEARLRLSLLSEQLASTLHLSAFA--- 173

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             +   ++   R   + R + Y ++ +         S+  L Q++E++ D +R PE   +
Sbjct: 174 --TQQEMEDIARLRHQEREIGYGIVPSSKFRDAIQISDEELRQYYEEHPDEFRTPERVAV 231

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQ 280
            Y+          I +    L+  Y ++K+++ +PE R    ++               +
Sbjct: 232 DYLRLTAKSLATDIPVDEQTLRDLYAESKDQFGTPEQRRASHILVQVPQGGDDAARQAAR 291

Query: 281 KEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           ++A+EA + L++G+ F ++A    E+ G +     LG F +  + D +  ++ FSL K G
Sbjct: 292 EKAEEALRRLQQGEPFEEVAKEVSEDPGSAQQGGDLGFFGRGVM-DPAFEEAAFSLEKVG 350

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           D +  +   FGY I  ++ I+     SF+EV++++A + R   A E   E  + L+
Sbjct: 351 DLSEPVLSKFGYHIIQLTGIQRGEAPSFEEVREELAQKYRQQLAEEHFYEQAETLD 406


>gi|270263574|ref|ZP_06191843.1| putative protease maturation protein [Serratia odorifera 4Rx13]
 gi|270042458|gb|EFA15553.1| putative protease maturation protein [Serratia odorifera 4Rx13]
          Length = 627

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 8/297 (2%)

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           + L  L+    LDQ+ + +GL     +V   I ++P F   + +F +  ++  ++R G  
Sbjct: 89  QALSQLIDNMLLDQYAKKLGLSVSDDQVKDAIRKAPYFQ-TNGQFDNAKYLDLISRMGYT 147

Query: 148 EKEYIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
              +     + L    V+  F   G + PS      A     + R+V    L+ + + A 
Sbjct: 148 ADNFAQSMRQQLVNQQVIQAFGQSGFVLPSESQGMAA--LVLQERNVRLATLDLKALQAK 205

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              ++  L  ++ + K+++ APE  ++SYI  D    + K+ +++ ++ A Y+++K  Y 
Sbjct: 206 QTVTDDELKDYYSQNKNSFIAPEQVKVSYIPLDAASMQDKVTVADADISAYYDQHKSSYG 265

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
            PE +    +    + EA+     LKKG  F  LA+E+   +     G       P+ + 
Sbjct: 266 QPERKNYSVIQLKTEAEANAVLDELKKGGDFATLAKEKSTDIISRRTGGELGWLEPETT- 324

Query: 326 ADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           AD +   +L +KG  + V+  S GY++  +++I P       EV+ DIA Q++  KA
Sbjct: 325 ADELKQANLTEKGQLSGVVKSSVGYLVVRLNDIAPEKVKPLSEVRDDIAKQVKQEKA 381


>gi|145298875|ref|YP_001141716.1| peptidyl-prolyl cis-trans isomerase D [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851647|gb|ABO89968.1| peptidyl-prolyl cis-trans isomerase D [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 637

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 115/577 (19%), Positives = 243/577 (42%), Gaps = 39/577 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ ++  VAK+ L ++ + F + G+   L +    +   +V    +  ++  N++
Sbjct: 2   MLDKLREGAQGKVAKVILGLIILSFALAGVGSYL-NGPARTAPATVNGNDISSAALENAY 60

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           + E   +  ++G        N +  +     + +LD L+  A  D    ++GL     ++
Sbjct: 61  RNERARMESQMGESFSQLAANPDYMKQ--FRRGVLDRLIDQALFDSKARELGLRVSDEQI 118

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I   P F  +D KF++D ++  + R G+  + + D   + + R  ++G  +G     
Sbjct: 119 KQAIIAMPEF-AEDGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMGALLGTEFAL 177

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
               +Q  + Y + R +  + L           S+  + Q+++     +   E  ++ Y+
Sbjct: 178 KGEAEQLDKLYNQTRDLRLVRLAAAAYLGDVQVSDQEVEQYYKTNSARFMNDEKVKVDYL 237

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQ 288
           L D     K I+++  + +  Y+++++ +   E R V  ++ P        +K A E   
Sbjct: 238 LLDAANLGKDIKVTEQDAKDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEKLAGELLT 297

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             K G  F  LA+           G     F K  + D +   + F+L K GD + ++  
Sbjct: 298 KAKGGDDFAALAKANSSDTFSAKKGGELDWFEKGVM-DPAFEQAAFALNKAGDLSNLVKS 356

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++ + T  F +V  +   +++  KA E    + +++ +  +   + D +
Sbjct: 357 PFGFHVIKLLGVEAAQTKPFVDVMGETIRRLQADKAKELFFAEQQKMAD--SSFENQDSL 414

Query: 405 SRREKIVSIDLPLVDF-----AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
                 + + +  VDF     A + +   +V ++ + EQL      +DD  + D  + L 
Sbjct: 415 DLTADTMGLKVQSVDFFSQADAPEPLNDPKVLSVAFSEQL------RDDNTNSD-VIELA 467

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
           DG  + + I    P   + L E+   V    K  K +E    KA Q +L+  K G+N + 
Sbjct: 468 DGKALVLHITGYQPKAAKPLAEIKEQVIAAIKYDKASEVARGKA-QGLLDKLKAGENIQA 526

Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
               LG  + T   + R   +      + ++QVF  P
Sbjct: 527 DLTALGLKMETHKGVARFAQD---MDQNLVAQVFRMP 560


>gi|258621306|ref|ZP_05716340.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM573]
 gi|258586694|gb|EEW11409.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM573]
          Length = 619

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 112/519 (21%), Positives = 228/519 (43%), Gaps = 22/519 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++        K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175
            I   P F  +  KF  +++ + L R G     + ++  K L R  ++    G     P 
Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178

Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + L DQ      + R +  + L+          S+  + Q+++   + +  PE  ++SY
Sbjct: 179 EVNLQDQ---LISQTRDIRTLTLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKK 292
           +       + +I I ++  Q  Y+++ +KY S E R V  ++    ++++A      L  
Sbjct: 236 VELSADALKAEIAIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNA 295

Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  +A+E+    G +    SLG   ++ + D +   + ++L +KG  + ++   FGY
Sbjct: 296 GADFTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I  + ++K      + EV + I  ++   +A +        LE+ LA   S D +    
Sbjct: 355 HIIRLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEK-LAFEHS-DSLDEAA 412

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
           K +S  +   DF   + +  ++ A+P   Q L     K+D L+ +     P    + V++
Sbjct: 413 KAISAKVEHTDFISAE-QAPDLLAVPAVLQALKSPEVKEDGLNSEVIEVAP-EHVVVVRV 470

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           +ES P     L+EV T V +    +K  ++     N++V
Sbjct: 471 EESRPETVLPLQEVKTQVVEQLSQLKGEQQALELGNKIV 509


>gi|157827683|ref|YP_001496747.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii OSU
           85-389]
 gi|157802987|gb|ABV79710.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii OSU
           85-389]
          Length = 519

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 169/388 (43%), Gaps = 18/388 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IRK + +++ ++   ++   F+ +G+ D L    G   V     + +    F+ + 
Sbjct: 1   MLNNIRKTADSFIMRVLFAMIVFAFVGFGIKDVLHGRGGGDIVTFSHAKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS+++G  +  E    + +D +IL  LV    LD  +     +     V   + 
Sbjct: 61  SLEINAISKQVGVSLTEEEIAQLNIDNRILKRLVFENILDYLVSYYDFDISDDTVKNLVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F      F   +F +       +E++Y+ ++ +   +    G F+        + D
Sbjct: 121 ESPVFKNDQGIFDIKLFKTYFRNSYTDEEKYLVNFKEKALKNIFAGTFLDSFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ + +N ++ P    I  PS+  L  +++  K ++  PE +  SYI  
Sbjct: 181 NIVNYMAEKREVELVQMNLQNKPKDLQIPVPSDQELKDFYQNNKSSFEIPEKRSFSYIKV 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV----------FPNQKEADEAF 287
                +KKI+++ +EL   Y +NKE++       V++ +            N + A    
Sbjct: 241 TTENLQKKIQVTKEELLEFYNENKEEFGEQSFEDVQKQLREQVESQKIDILNMELAKNLE 300

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHG 344
             +  G   +++AE+    +++I+  S++ + I D  +   ADSIF L++     P+   
Sbjct: 301 DDVAAGSSLVEIAEKYELPINNINNISYA-DLIEDKIIAENADSIFELSEGELSYPIEAE 359

Query: 345 SFGY-VIAHVSNIKPSFTVSFQEVKKDI 371
              Y V+  + +I P+    F  +K+ I
Sbjct: 360 DKSYLVLVELKSINPAKIPEFDIIKEQI 387


>gi|157369342|ref|YP_001477331.1| peptidyl-prolyl cis-trans isomerase D [Serratia proteamaculans 568]
 gi|157321106|gb|ABV40203.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Serratia
           proteamaculans 568]
          Length = 627

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 114/550 (20%), Positives = 235/550 (42%), Gaps = 39/550 (7%)

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           + L  L+    LDQ+ + +GL     +V   I ++P F   + +F +  ++  ++R G  
Sbjct: 89  QALSQLIDNMLLDQYAKKLGLSVSDDQVKEAIRKAPYFQ-TNGQFDNAKYLDLISRMGYT 147

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR----FYFENRSVDYIVLNNRHVP 203
              +     + L    V+  F G    S  +L    +       + R V    L+ + + 
Sbjct: 148 ADNFAQSMRQQLVNQQVIQAFGG----SGFILPAEAQDMTALVLQQRDVRLATLDLKALQ 203

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
           A    ++  L  ++ + K+++ APE  ++SYI  D    + K+ +++ ++ A Y+++K  
Sbjct: 204 AKQTVTDDELKDYYSQNKNSFIAPEQVKVSYIPMDAAAMQDKVTVADADISAYYDQHKSS 263

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
           Y  PE +    +    + EA+     LKKG  F  LA+++   +     G       PD 
Sbjct: 264 YGQPERKNYSVIQLKTEAEANAVLDELKKGGDFATLAKDKSTDIISRRTGGELGWLEPDT 323

Query: 324 SLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           + AD +   +L +KG  + V+  S GY++  +++I P       EV+  IA Q++     
Sbjct: 324 T-ADELKQANLTEKGQLSGVVKSSVGYLVIRLNDIAPEKVKPLSEVRDAIAKQVK----Q 378

Query: 382 EKVKEDYKRLEEFLALGTSMD--EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE-- 437
           EK  + Y  L++ ++   + D   ++  E+   +     D+  +D      AA+ +K   
Sbjct: 379 EKAVDAYYALQQKVSEAATSDNESLASAEEAAGVKAAQTDWFTRD---NIPAALNFKPVI 435

Query: 438 QLLF--RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVK 494
           Q +F   + G+      +  V   DG   +V ++    P      ++V   V +  K  K
Sbjct: 436 QSIFDGSLIGEGGSPGSNSDVITVDGDRAFVIRVSGHKPEGIEPFDQVKDRVAELVKRNK 495

Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
             +E   +  +L++E  K+GK    + K  G S  +  ++ R   +++      +  VF+
Sbjct: 496 AEQEAKLQGEKLLVEL-KQGKGDEAM-KAAGLSFGSVQKMARAPEDSQL-----VQSVFA 548

Query: 555 --GPVEMVKCFPI----ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
              P E    + +    ++ +  +          P +E   F+S + +       DS++A
Sbjct: 549 LPHPQEGKPVYGMSQDRQDNVVLIALDAVKPGTLPAEEMKTFVSKMEEGATGVSFDSLLA 608

Query: 609 YLKSQYSVTV 618
            L+ +  +T+
Sbjct: 609 SLRKEAKITM 618


>gi|262404271|ref|ZP_06080826.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC586]
 gi|262349303|gb|EEY98441.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC586]
          Length = 619

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 109/519 (21%), Positives = 226/519 (43%), Gaps = 22/519 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++        K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQSQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDQQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175
            I   P F  +  +F  +++ + L R G     + ++  K L R  ++    G     P 
Sbjct: 120 MILDMPQFQSQ-GQFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMSALQGSEFSLPG 178

Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + L DQ      + R +  I L+          S+  + Q+++   + +  PE  ++SY
Sbjct: 179 EVNLQDQ---LISQTRDIRTITLSLADFAKKVTLSDDDIQQYYKANTERFTRPEQMKVSY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKK 292
           +       +K+I I ++  Q  Y+++ +KY + E R V  ++    ++++A      L  
Sbjct: 236 VELSADALKKQIMIDDEAAQEYYQEHLDKYSTAEQRKVSHILVEGSDEQKAQAILDELNA 295

Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  +A+E+    G +    +LG   ++ + D +   + F+L + G  + ++   FGY
Sbjct: 296 GADFATVAKEKSQDVGSAQEGGALGWIERDTM-DPAFEAAAFALTENGQISGLVKSEFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I  +  +K      + EV K +  ++   +A +        LE+ LA   S D +    
Sbjct: 355 HIIRLDEVKAPVVKPYTEVAKAVKQELVDQQALDAFYTKQSELEK-LAFEHS-DSLDEAA 412

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
           K +S  +   DF   + +  ++ A P   Q L     K+D L+ +     P+   + V++
Sbjct: 413 KAISTQVEHTDFISAE-QAPDLLANPAVLQALKSPEVKEDGLNSEVIEVAPE-HVVVVRM 470

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           +ES P     L +V + V +    +K  ++     N++V
Sbjct: 471 EESRPETVLPLADVKSQVVEQLSRMKGEQQALELGNKIV 509


>gi|239908536|ref|YP_002955278.1| peptidyl-prolyl cis-trans isomerase [Desulfovibrio magneticus RS-1]
 gi|239798403|dbj|BAH77392.1| peptidyl-prolyl cis-trans isomerase [Desulfovibrio magneticus RS-1]
          Length = 650

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 92/434 (21%), Positives = 196/434 (45%), Gaps = 33/434 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK +++W  KI   ++ + F+ WG+ +  F+   ++ + +V  Q +    +   +
Sbjct: 1   MLDPMRKYAQSWGIKIVFGLIIIVFVFWGVGN--FNGDRATVLATVNGQPILIKDYEKQY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ L ++  K   V + +  +  G   ++  N+V+   L+   + +G+    G +  EIA
Sbjct: 59  QENLRLVKNKNPNVTDKD-LQDGGFRWQVFTNMVTTKLLEDQAKTLGIAVTAGELRSEIA 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F  +  +F    + + L    ++  E+   + + L   + +  FVG   P+ +   
Sbjct: 118 KIPAFQNESKQFDAKRYENLLKANDVSPGEFEADFRQQL-LLEKLAAFVG--LPAQVAEA 174

Query: 181 QAKR---FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +A+    F  E   + YI             S+  + +++E  KD +  P   +I ++ F
Sbjct: 175 EARSIFDFMREQAIIKYIPFAATDFTKGVTISDEQIAKYYEARKDEFATPAQVKIDFVEF 234

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPE---IRTVEQLVFPN--QKEADEAFQSLK- 291
                 K  EI++ +++A+++ N++KY  PE   +R +  ++ P+  Q+  D A + LK 
Sbjct: 235 TPKAMAKPAEITDTDIEADFKANQKKYERPEQVRVRHILMMLPPDAPQEVVDAAEKRLKA 294

Query: 292 ------KGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
                 KGK F  L  +         G+  + +  GS  KE+ P     +  F+L KK +
Sbjct: 295 MADDVRKGKDFATLIPKDPANADGIIGEDWAWLPKGSLPKEFAP---FEEKAFTL-KKDE 350

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
            +  +  S G  +      + S   +  EVK +I   +   +A++K+ +    ++E L+ 
Sbjct: 351 VSDPVRTSLGLHLIQGGEKQASGQRALAEVKDEIRADLAEQRAADKLTKSLDAIQEKLSS 410

Query: 398 GTSMDEISRREKIV 411
           G  ++     EK+ 
Sbjct: 411 GEPLEAAVAAEKLA 424


>gi|238783605|ref|ZP_04627626.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia bercovieri ATCC
           43970]
 gi|238715483|gb|EEQ07474.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia bercovieri ATCC
           43970]
          Length = 607

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 176/377 (46%), Gaps = 32/377 (8%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG---F 73
           F++     +LI G +D    V+G         Q++  +    + + E G + Q++G    
Sbjct: 4   FILTGVGSYLIGGSNDFAAKVNG---------QEISRAQLEQAVQSERGRLQQQLGEQFS 54

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            + +       L +++L  LV+   LDQ+ + +GL A   +V   I ++P F   DNKF 
Sbjct: 55  ALAANEGYMQQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKDAIRQAPYFQ-TDNKFD 113

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP------SNLLLDQAKRF 185
           ++ ++  + R G    ++     + L    ++  F   G + P      S L+L Q    
Sbjct: 114 NNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPIEAQAMSELILQQ---- 169

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
               R V    ++ + + A    ++  L  ++++ K+++ APE  +IS+I  D    + K
Sbjct: 170 ----REVRLATIDLKALQAQQKVTDEELKAYYDQNKNSFIAPEQMKISFIAMDAAAMQDK 225

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           I ++ +++ A Y+++K  Y  PE R    + F N+ EA  A + LKKG  F  +A+E+  
Sbjct: 226 ITVTEEDIAAYYDQHKSSYTQPERRNYSVIQFKNEAEAKAALEELKKGADFAAMAKEKST 285

Query: 306 SLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            +     G       P+ + AD +    L++KG  + V+  S GY+I  +++IKP     
Sbjct: 286 DIISRKNGGDLGWLEPETT-ADELKQAKLSEKGQLSDVVKSSVGYLIVRLNDIKPEQVKP 344

Query: 364 FQEVKKDIANQMRITKA 380
             EV   +A Q++  KA
Sbjct: 345 LSEVHDALAKQVKQEKA 361


>gi|229515304|ref|ZP_04404764.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TMA 21]
 gi|229348009|gb|EEO12968.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TMA 21]
          Length = 619

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 107/515 (20%), Positives = 218/515 (42%), Gaps = 14/515 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G     + 
Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + ++  Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAQVSVDDEAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F  LA+E+ + L   + G       PD    +   + F+L +KG  + ++   FGY I  
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           + +IK      + EV++ I  ++   +A +        LE+ +A   S D +    K +S
Sbjct: 359 LDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
             +   DF   + +  EV   P   Q L     K+D L+ +     P+   +    +   
Sbjct: 417 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           P     L+EV + V +    +K  ++     NQLV
Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509


>gi|238911417|ref|ZP_04655254.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
          Length = 623

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 140/650 (21%), Positives = 289/650 (44%), Gaps = 52/650 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q++  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P F   D KF ++ + + + + G+      D Y + L         + G+  +
Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172

Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           + +L    D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R
Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQLVTDQEVSSYYDQNKVRFMTPEQFR 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D    +  +  S+ ++QA Y+++ +++  PE      +    + +A     +L 
Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290

Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           KG+ F  LA+E+   +     G           +P++  A     L +KG  + VI  S 
Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404
           G+++A + +I+P+      EV+ DIA +++     EK  + Y  L++ ++   S D   +
Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463
           +  E++  +      +   D   +E+   P  + +    + G++     +  +   DG  
Sbjct: 403 AGAEQVAGVKAVETGWFSHDTLPEELNFKPVADAIFNGGLVGENGTPGLNSDIITVDGDR 462

Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V++ E  P   + L EV   V    K  K  ++    A +L++E  K GK    + K
Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577
             G S      ++R          D +SQ     S P +    + + N +  + V+    
Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573

Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|254286721|ref|ZP_04961675.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae AM-19226]
 gi|150423148|gb|EDN15095.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae AM-19226]
          Length = 619

 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 108/515 (20%), Positives = 217/515 (42%), Gaps = 14/515 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G     + 
Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + K+ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAKVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F  LA+E+ + L   + G       PD    +   + F+L +KG  + ++   FGY I  
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           + +IK      + EV++ I  ++   +A +        LE+ +A   S D +    K +S
Sbjct: 359 LDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
             +   DF   + +  EV   P   Q L     K+D L+ +     P+   +    +   
Sbjct: 417 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           P     L+EV + V +    +K  ++     NQLV
Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509


>gi|114569954|ref|YP_756634.1| hypothetical protein Mmar10_1404 [Maricaulis maris MCS10]
 gi|114340416|gb|ABI65696.1| hypothetical protein Mmar10_1404 [Maricaulis maris MCS10]
          Length = 645

 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 111/529 (20%), Positives = 233/529 (44%), Gaps = 47/529 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML   R  +++ +A I +V+L + F I    +  +F+ SG + VV VG +++       +
Sbjct: 1   MLSNFRAFAQSPIALIIIVLLVLSFAIAMPGAGGIFTGSGDAVVV-VGPERISQREMATA 59

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           + +E+  + Q+    V  E AR  G+  ++L   ++ AT+     D+GL      +  E+
Sbjct: 60  FNREVARL-QEQNPDVTREMAREEGIAYQVLQQQITMATMAARARDLGLAISDVAIVSEV 118

Query: 120 ARSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNL 177
           A  P F      +F  D   + L R G+ E ++       L R+ ++    G    P  +
Sbjct: 119 ADVPAFQNPITERFDRDTMAAALQRSGVTEDQFARDIEGDLLRSQLMATLAGFSDVPDQI 178

Query: 178 LLDQAKRFYF--ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY-----KDNYRAPEYK 230
               A R+    E R +  +V++      I DP++  L  + ++      +  +  PEY+
Sbjct: 179 ---AATRYLVAEEQRRMTGLVIDASTADEIEDPTDETLQTFIDETLGANGEPVFTRPEYR 235

Query: 231 RISYILFDVHEKEKKIEISNDELQA--EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            I+ + F + +  + + +    L+   +YE    +  +P  R+  QL   +Q  AD+A  
Sbjct: 236 AITLVRFQLDDFIRDVAVDEATLREVYDYEIATNQIGTPAYRSFTQLTVSDQAGADDAAS 295

Query: 289 SLKKGKKFIQLAEEQG--KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            L  G+    +A E G    L    +  F    IPD  L +++F+++  G+    + G F
Sbjct: 296 RLAAGEAPSAVAAELGLDTPLVQTDVQQFE---IPDEGLGETVFAMS-AGE-ARAVEGRF 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+    ++  + +   +F+E +  +       +A++ + +     E   A G S+ E++ 
Sbjct: 351 GWSAVIITGAEEATQPAFEEERPRLQADAARAQATDDMYDAISAFETVRATGASL-EVAA 409

Query: 407 REKIVSIDL--PL-VDFAGKDVK--GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP-- 459
            E    +++  PL V+   +D++  G+   A+    ++L        P + DH       
Sbjct: 410 EESGTPLEIFQPLAVNSIDEDLQFDGERYQAL--APEIL--------PAAFDHIEGFATN 459

Query: 460 -----DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
                +  +  +++ E I +R  +LEE+    +  W++++   ++ ++A
Sbjct: 460 LESYNETDFYTLRVDEIIQSRPFELEEIREQAESRWRSIQVDTQLQARA 508


>gi|262166048|ref|ZP_06033785.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus VM223]
 gi|262025764|gb|EEY44432.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus VM223]
          Length = 619

 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 100/465 (21%), Positives = 203/465 (43%), Gaps = 21/465 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++        K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175
            I   P F  +  KF  +++ + L R G     + ++  K L R  ++    G     P 
Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178

Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + L DQ      + R +  I L+          S+  + Q+++   + +  PE  ++SY
Sbjct: 179 EVNLQDQ---LISQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKK 292
           +       + +I I ++  Q  Y ++ +KY S E R V  ++    ++++A      L  
Sbjct: 236 VELSADALKAEIAIDDEAAQQYYHEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNA 295

Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  +A+E+    G +    SLG   ++ + D +   + ++L +KG  + ++   FGY
Sbjct: 296 GADFTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I  + ++K      + EV + I  ++   +A +        LE+ LA   S D +    
Sbjct: 355 HIIRLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEK-LAFEHS-DSLDEAA 412

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
           K +S  +   DF   + +  ++ A+P   Q L     K+D L+ +
Sbjct: 413 KAISAKVEHTDFISAE-QAPDLLAVPAVLQALKSPEVKEDGLNSE 456


>gi|160898321|ref|YP_001563903.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
 gi|160363905|gb|ABX35518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
          Length = 631

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 178/408 (43%), Gaps = 29/408 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M E IRK S+  +  I L +L +P F+  G++   F+ S S  V  V   ++  + + N+
Sbjct: 1   MFESIRKHSKFVM--ILLFLLIIPSFIFVGVNQNYFTES-SVIVARVDGHEIKQADWENA 57

Query: 60  WKQELGMISQKIGFV----VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + E   +  +   +    ++S +AR   L+K + D +++ A   Q +     +A   R 
Sbjct: 58  HRMESDRLRAENPNIDPKLLDSPQARYATLEKMVRDQVLAAAV--QKMHLAASDAQLVRT 115

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI         D     + + + +  +G+  + +  +  + LS   V+G   G    +
Sbjct: 116 LQEIPAIAALKKPDGSMDAEAYRALVGSQGLTPEGFEANLRRELSMNQVMGGVTGTAFAT 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +  + QA    ++ R V           +   P+ A L  +++ +   ++  E  ++ Y+
Sbjct: 176 DTQVKQAIDALYQRREVQVARFEASAYASKVQPTEADLKAYYDAHTSQFQQSEQAKVEYL 235

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-- 293
           L DV   E  I +S D++++ Y +N E+   PE R    ++    K+A  A Q   K   
Sbjct: 236 LLDVPSIEAGITLSEDDVRSYYNQNAERLAGPEERRASHILINASKDAPAAEQEKAKAKA 295

Query: 294 -----------KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
                      K+F +LA    ++ G + S   LG F +  +      D+ F + K GD 
Sbjct: 296 EELLAELRKDPKRFAELAKANSQDGGSAASGGDLGYFGRGAMVK-PFEDAAFGM-KVGDI 353

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           + V+H  FGY I  + +IK     SF++++  +  +++  +A  K  E
Sbjct: 354 SDVVHSDFGYHIISLVDIKKPKAPSFEQMRPKLEAELKQQQAQRKFAE 401


>gi|213582060|ref|ZP_03363886.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 405

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 189/394 (47%), Gaps = 28/394 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q++  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P F   D KF ++ + + + + G+      D YT+ L         + G+  +
Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYTQALRNQLTTQQLINGVAGT 172

Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           + +L    D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R
Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D    +  +  S+ ++QA Y+++ +++  PE      +    + +A     +L 
Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290

Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           KG+ F  LA+E+   +     G           +P++  A     L +KG  + VI  S 
Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           G+++A + +I+P+      EV+ DIA +++  KA
Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEKA 380


>gi|300114008|ref|YP_003760583.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           watsonii C-113]
 gi|299539945|gb|ADJ28262.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           watsonii C-113]
          Length = 640

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 100/530 (18%), Positives = 217/530 (40%), Gaps = 36/530 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++   A + + ++ +PF +WG+++ +    G +   SV  +++    F  ++
Sbjct: 1   MLQAIRSRAQGIFAWVIVGLIAIPFTLWGINNYMLD-GGEAVAASVNGEEISTREFQLAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG---RVWG 117
           +      +Q++ F++ +     +  D     N++ G    + + D   E   G       
Sbjct: 60  QN----YTQQLRFLMGASFPEEMLDDPATKQNVIEGLVEQRLVLDAAAELGLGMSDSALS 115

Query: 118 EIARS-PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
           ++ RS   F G+  +F    + + L+ +G+    Y       L    +          + 
Sbjct: 116 QVIRSNEAFQGESGQFDSQRYEAVLSSQGLTPVAYEARLRSALLSEQLASSLRLSAFATQ 175

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +D   R   + R V Y ++ + +       S   + Q+++ + + +R PE  ++ Y+ 
Sbjct: 176 QEVDTIARLRHQKREVAYSIVPSANFHDAIQVSADKVRQYYDDHPEEFRIPEQVKVHYLR 235

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---------- 286
                    I +    L+  YE++K++Y  PE R    ++     + DEA          
Sbjct: 236 LTAASLATDIPLDEQTLRNFYEESKDQYRVPERRRASHILITIPPQGDEAVRQQAQEKAE 295

Query: 287 --FQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
              + L++G+ F ++A    E+ G +     LG F +  + D +   ++FSL + G  + 
Sbjct: 296 AVLERLQQGEAFEEVAKEVSEDPGSAKKGGDLGFFGRGVM-DPAFEKAVFSLEETGVLSE 354

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
            I   FGY I  ++ I+P     F+ V++++A + R   A E+  E  + L+        
Sbjct: 355 PILSKFGYHIIKLTGIEPGEVKPFEAVREELAQKYRQQIAEEQFYEQAEILDNLTYENPF 414

Query: 401 MDEISRREKIVSIDL--PLVDFAGKDVKGK-EVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
             E++     +S++   P     G  +    +V A  + E++L              T+ 
Sbjct: 415 TLEVAAESLGLSVETSEPFSQNGGSGIAANTKVVAAAFSEEVLREEM-------NSQTIE 467

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           L     + V++ + +PA  +  EEV   +++     +   +   +   LV
Sbjct: 468 LAPNDLVVVRLDKHLPADTKPFEEVREQIQEKLTLEQAKAQAQKRGEALV 517


>gi|68171424|ref|ZP_00544815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|67999166|gb|EAM85825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia
           chaffeensis str. Sapulpa]
          Length = 408

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/415 (20%), Positives = 182/415 (43%), Gaps = 25/415 (6%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALF--SVSGSSTVVSVGRQKVPFSSFINSWKQ 62
           I   S+ +  K  L++L    +      + F  S +    +  +G +K+    + +++  
Sbjct: 3   IHMKSKAFFVKPLLIILVCSLVFIAFGASFFPGSFNNEKYIAKIGHEKLSLQDYTSAYHD 62

Query: 63  ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
           EL  I   +   +  E+     +    L+ L+    L +F + + L+     +   I   
Sbjct: 63  ELRYIQHVLNRPLTEEQIAQFNIKLSTLNKLIENKVLTKFADSLNLKVGENSILNHIKSI 122

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL----- 177
             F  ++  F    F   L+  G+ E+ YI+   K    T ++     G + +       
Sbjct: 123 KFFQDENGNFDKTKFNIGLSNAGLTERLYINKLEKAFPITMLMSCLFSGTQNTYTQYHPE 182

Query: 178 LLDQAKRFYFENRSVDYI----VLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKR 231
           L+ Q  +   + R++D I      N+  VP I +     L + +E+ +   N   PE + 
Sbjct: 183 LIKQILQNLHQARTIDVIEISPTTNDISVPNIDE-----LKKLYEEKRKSGNLTFPESRV 237

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           I Y+  D      +  ++ +E+  + + ++      E R +  LVF  + EA+ A ++L 
Sbjct: 238 IEYVTIDHENFINQTNVTQEEIDNKIKADE----LDEQRDIFNLVFSTKNEAETALKALN 293

Query: 292 KGKKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           +G  F  +      + L +I+L +  K  +P+  + + +FSL K+G+ +P++H  FG+ I
Sbjct: 294 EGTDFDSIVTNIAHTTLDNITLFNIVKNTLPN-DIRNQVFSL-KEGEISPILHSMFGWHI 351

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
             + NI    T    E+ + IA  ++  KA++ +  + + + + +  GTS+ EI+
Sbjct: 352 IKIKNIHKISTKDLAELSEKIAQNIKKKKATDLLYTEIQAINDKINNGTSIQEIA 406


>gi|120610416|ref|YP_970094.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
 gi|120588880|gb|ABM32320.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
          Length = 642

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 183/412 (44%), Gaps = 37/412 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M E IRK S+  V  I L +L +P F++ G+    F+ S S+ V  V    +    + N+
Sbjct: 1   MFESIRKHSK--VVMIVLFLLIIPSFVLVGIDRNYFT-SKSAVVARVDGHDITQDDWDNA 57

Query: 60  WKQELGMISQKIGFV----VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + E   I  +   V    ++S RAR   L++ + D ++  A +   +  +  +A   R 
Sbjct: 58  HRMETDRIRAQSPSVDARLLDSPRARYATLERLVRDRVMQAAAVKMHL--VTSDAQLART 115

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG----G 171
              I         D     + + + +  +G+  + +  +  + LS + V+G  +G    G
Sbjct: 116 LQGIPAIAALKRPDGSLDAEAYRALVGSQGLTPEGFESNVRRELSLSQVMGGVLGSAFAG 175

Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
             P+ L LD      ++ R +     + +   A   P++  L  +++ ++  +R PE+  
Sbjct: 176 QEPARLALDA----LYQRREIQVARFDAKDFAAKVAPTDDELQSYYKAHEAQFRQPEHAD 231

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----- 286
           + Y++ D+      I +S D+L++ Y++N E+    E R    ++    K+A  A     
Sbjct: 232 VQYVVLDLDAVRASITLSEDDLRSYYKENLERLAGKEERRASHILINAPKDAPAADREKA 291

Query: 287 ---FQSL-----KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
               Q+L     K    F ++A    ++ G + S   LG F +  +      D+ FS+ K
Sbjct: 292 RARAQALLEQVRKAPGTFAEVARKNSQDTGSAPSGGDLGFFKRGDMVK-PFEDAAFSM-K 349

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           KGD + ++   +GY I  ++++K     +F+EV+  +  + +  +A  K  E
Sbjct: 350 KGDISDLVESEYGYHIIQLNDVKTPRQPTFEEVRAKLETEAKQQQAQRKFAE 401


>gi|229521840|ref|ZP_04411257.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TM
           11079-80]
 gi|229340765|gb|EEO05770.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TM
           11079-80]
          Length = 619

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 107/515 (20%), Positives = 217/515 (42%), Gaps = 14/515 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G     + 
Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F  LA+E+ + L   + G       PD    +   + F+L +KG  + ++   FGY I  
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           + +IK      + EV++ I  ++   +A +        LE+ +A   S D +    K +S
Sbjct: 359 LDDIKTPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
             +   DF   + +  EV   P   Q L     K+D L+ +     P+   +    +   
Sbjct: 417 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           P     L+EV + V +    +K  ++     NQLV
Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509


>gi|91788924|ref|YP_549876.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
 gi|91698149|gb|ABE44978.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
          Length = 643

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 123/529 (23%), Positives = 229/529 (43%), Gaps = 45/529 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M + IRK ++  +A +FL  L VP F+++GL     S      V  V  + +  S +  +
Sbjct: 1   MFDFIRKHTKVTMALLFL--LIVPSFILFGLDGYNRSREQGVAVARVDGKDIIQSEWDRA 58

Query: 60  WKQELGMISQKI----GFVVNSERARSVGLDKKILDNLVSGATLDQF---IEDIGLEADH 112
            + E+  +   +      +++S +AR   L++ + D +++ A  D+F   I D  L A  
Sbjct: 59  HQLEVDRLRASMPSLDAKLLDSPQARYATLERLVRDRVIAAAA-DKFKLVISDQRL-ARE 116

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
            +   EIA        D     + +   L  +G++ + +  +    LS   V+       
Sbjct: 117 LQQSSEIAS---LRRSDGNLDMERYRQVLGSQGMSPEMFEANVRADLSNRQVLTGIGASG 173

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             S+   D A   YFE R +     N     A   P++A L Q+++  +  ++APE   I
Sbjct: 174 FSSSSAADLALNAYFEKREIQLARFNAADFAAKLSPTDADLDQFYKANEKLFQAPEQASI 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSL 290
            Y++ DV    K I I+  +L+  YE+N ++    E R    ++   P    A+E  ++ 
Sbjct: 234 EYVMLDVETVRKSITINEADLKTYYEQNLQRLSGAEERRASHILITSPKTASAEERQKAK 293

Query: 291 KKGKKFIQLAEEQGKSLSDIS---------------LGSFSKEYIPDVSLADSIFSLAKK 335
            K ++ +   ++   + +D++               L  F++  +      D++FS+ KK
Sbjct: 294 AKAEELLAAVKKSPDTFADVARKNSQDPGSAPSGGDLDFFARGAMVK-PFEDAVFSM-KK 351

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           GD + V+   FGY I  +++IK     SF+E+K ++   ++  +A +K  E  +      
Sbjct: 352 GDISAVVESEFGYHIIRLTDIKAPKQRSFEEMKPELEADLKKQQAQKKFSEAAE------ 405

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA---AIPYKEQLLFRVFGKDDPLSK 452
           A    + E +   K V+  L L      +V  +  A    +    + L  +FG D    K
Sbjct: 406 AFTNGVYEQAGSLKPVAERLKLDIKTASNVTRQPSAGTTGVLANPKFLNALFGPDAVEKK 465

Query: 453 DHTVALPDGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
            +T A+       V  +I +  PAR +   EV   V++ W   ++AEE 
Sbjct: 466 RNTEAIEVAPSQLVSGRILQYTPARTQPFAEVKDIVRQRWLAQRSAEEA 514


>gi|46579478|ref|YP_010286.1| peptidyl-prolyl cis-trans isomerse domain-containing protein
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602972|ref|YP_967372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris DP4]
 gi|46448892|gb|AAS95545.1| peptidyl-prolyl cis-trans isomerse domain protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563201|gb|ABM28945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris DP4]
 gi|311233293|gb|ADP86147.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris RCH1]
          Length = 629

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 185/431 (42%), Gaps = 31/431 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML++IR  +++W  K+   ++ V F+ WG+         +S V +V ++ +    FI  +
Sbjct: 1   MLDVIRGHAQSWGVKVAFGLIIVVFVFWGVGS--MQEGPTSVVATVNKKPIVIRDFIREY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +  +   V   E  + +GL +++L  +V+   + Q  E +G+      +   I 
Sbjct: 59  ERQVESLRTRFPGVTADE-LKKLGLKRQVLQQMVAETLMQQEAERLGITVTPYELRAAID 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F     KF  + +     ++ +  ++ +    +   R D++G  +  +  +  ++ 
Sbjct: 118 QIPAFRDASGKFDPETY-----KKVLKAQQTVPGRFEEGVRKDMLGRKMRALVTAGAVVT 172

Query: 181 QAK-----RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            A+      +  E RS+DY++       A A   +A L  W++  K  +  P+  R+ ++
Sbjct: 173 DAEARDMFTYAQEKRSIDYVLFPLDEYAAAASIEDAALQAWYDSNKARFTEPQKVRLDFV 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADE--------- 285
                     I+I    + A Y +N   YF  PE      ++    + ADE         
Sbjct: 233 RISAESLAAGIDIPETAIAAFYAENAASYFMQPERVRARHILVRVPEGADEATVRKAEER 292

Query: 286 ---AFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
              A   +K GK F  +A    E G + +   LG F +  +      D+ F L K G+ +
Sbjct: 293 IADAAAQIKAGKDFAAVAAKVSEDGSARNGGELGWFGRGEMVK-PFEDAAFGL-KPGEVS 350

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
             +   FG+ +      +     +  EV+ +I  ++   KA EKV +      E ++ G 
Sbjct: 351 APVRSQFGFHLIKSEGHEAQRQKALDEVRNEIRKRLAEEKAIEKVHDSLDNALELVSAGK 410

Query: 400 SMDEISRREKI 410
           S+DEI+ + K+
Sbjct: 411 SVDEIAAQLKL 421


>gi|311695072|gb|ADP97945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine bacterium
           HP15]
          Length = 614

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 120/551 (21%), Positives = 247/551 (44%), Gaps = 61/551 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++  +AK+ + +L V   IWG+   +   SG   V +V  + +    F+   
Sbjct: 1   MLQDIRNNAQGTIAKVIIGLLIVSLSIWGMDAIVGGFSGEPEVATVNGEDITEREFLRVV 60

Query: 61  KQE----LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + E    L  +      +++ ++ R+      +LD+L+    L Q     GLE +   + 
Sbjct: 61  QMESQRRLSRMENPDPSMLDEDQIRT-----DVLDSLIQEQVLIQDANAQGLELNDADID 115

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I + P F   D +F+ D FV+ +   G+     +  + + + +  VV     G+  S 
Sbjct: 116 ALITQMPQFQ-VDGQFNRDRFVATVRNMGMG----VGEFREAMRKQYVVNQIRAGIVQSG 170

Query: 177 LLLDQ--AKRFYFENRSVDYIVLNNRHVPA--IADP---SNAVLTQWFEKYKDNYRAPEY 229
           L+ D+   +    +N++  + VL+   +PA  +AD    S+A +  ++E+    ++ PE 
Sbjct: 171 LVADENAEQLLQIQNQTRSFRVLD---IPASSVADAVSVSDADVEAFYEENSGAFQQPER 227

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
              +YI   +    + IE+ + ELQA YE+      S E R    ++     +ADE   +
Sbjct: 228 VDAAYITLSLGALAESIEVDDAELQAYYEQQAADLASEE-RRASHILIEEGSDADETMAT 286

Query: 290 LKK----GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA----------DSIFSLAKK 335
           +++    G+ F  LA E        S+ + S E   D+  A          +++F+L ++
Sbjct: 287 IQERLAAGESFADLARE-------YSIDTVSAEDGGDLGYAGRGIYAEPFEEALFAL-EE 338

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G+ +  +  SFG  +  + +++ S   S  E++    +Q+R   A EK +E +  +   L
Sbjct: 339 GEVSEPVRTSFGVHLIRLEDVRESEVPSLDEME----DQLRRELAREKAREQFAEVRAEL 394

Query: 396 ALGT-SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           A    + D+++   + + +++   +   +D  G +    P+    L R    +D L   +
Sbjct: 395 ADSAYAADDLAGPAEELGLEVREANGVTRD--GGQA---PFDHAGLVRQLFSEDVLDAGY 449

Query: 455 TVALPD-GSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
              L D G  + V  ++ +   A    L++V   ++   +  KT E +S +A+ ++ +  
Sbjct: 450 NTELIDVGDNVSVVARVNKYHEAEQLPLDQVRDQIRTTLEQRKTREALSERADAIIADL- 508

Query: 512 KEGKNFRDIGK 522
           + G++   IG+
Sbjct: 509 ESGQSPEGIGE 519


>gi|46204905|ref|ZP_00049316.2| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 294

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 12/295 (4%)

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTS 400
           + G FG V+  V+ I+P     F EVK +I  ++ + +  E +  +    +E+  A    
Sbjct: 5   VKGRFGTVLLRVTGIEPGDIKPFDEVKDEIRKEVALRRVREGEFDKAQDAIEDARASAKP 64

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
           + EI++   +  + +P VD  G D  GK V  IP KE  L   F + D  +    +    
Sbjct: 65  LAEIAKDRGLTLLGIPAVDAQGNDPSGKPVEGIPDKETTLPAAF-RADVGNDTEALRTKT 123

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
           G  +W  + +  P+ ++ L EV  +  K W   + A+ + +K+ +L  E  ++G+    +
Sbjct: 124 GGTIWYDVVKIDPSHEKPLSEVRDEAVKGWTQAEVAKRLVAKSKELT-ERLEKGEAIEAV 182

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
            +  G  L     + R   ++   G D + ++F+ PV      P  +G    VFKVT + 
Sbjct: 183 AQETGLPLKQVADLGRNQTKDDLSG-DIVERIFTTPVGKAASAP--SGEGRAVFKVTAAT 239

Query: 581 V-----GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           V     G   ++ + ++ L   +  D+L   IA ++    V V+   ++R L GE
Sbjct: 240 VPAFVAGTPSDR-QLVTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRALGGE 293


>gi|188534628|ref|YP_001908425.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Erwinia
           tasmaniensis Et1/99]
 gi|188029670|emb|CAO97549.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia tasmaniensis Et1/99]
          Length = 622

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 139/595 (23%), Positives = 251/595 (42%), Gaps = 60/595 (10%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++ +R AS     KI L ++ + F++ G+   L   SG      V  Q++  +    ++ 
Sbjct: 1   MDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSGD-YAAKVNGQEISRAQLERAFS 59

Query: 62  QELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            E     Q +G    V+ S       + ++ L  L+    L Q+ +DIGL     ++   
Sbjct: 60  SERARQQQMLGEQFSVLASNEGYMQQMRQQTLSQLIDEVLLTQYAKDIGLTIGDDQIKQA 119

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-----FVGGMR 173
           I   P F     +F +  ++S +   G +  +Y +   K L+   ++       FV G  
Sbjct: 120 IFTQPAFQTA-GQFDNAKYLSIINNIGFSADQYAEALRKQLTTQQLINAVTKTDFVLGNE 178

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
             +L          + R V  + ++   + A  D +   ++ ++++++ +  + E  R+S
Sbjct: 179 ADSLAA-----LVSQQRLVREVTIDVNALAAKQDVTQEEISNYYQQHQSSLMSSEQFRVS 233

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D    E+ +  S  ++Q+ YEK+++ Y  P+      +    + EA     SLKKG
Sbjct: 234 YIKMDAAAMEQAV--SESDIQSWYEKHQDDYTQPQRNRYSIIQTNTEAEARSVLDSLKKG 291

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F +LA+E  KS+  IS      +G    +  PD  L  +  SL +KG  + VI  S G
Sbjct: 292 DDFAKLAKE--KSVDPISARNGGDMGWLEPQTTPD-ELKGA--SLKEKGQLSGVITSSPG 346

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EIS 405
           ++IA +   +P       EV  DIA +++     EK    + +L++ ++   S D   ++
Sbjct: 347 FIIARLDETQPEKVKPLSEVHDDIAAKLK----QEKAVAAFYKLQQKVSDAASNDNESLA 402

Query: 406 RREKIVSIDLPLVDFAGK-----DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
             E++  +     D+  +     D+K K V    +   LL    G++     +  V   D
Sbjct: 403 SAEQVAGVKAVDTDWFDRDNLPADLKFKAVQDAIFNGALL----GENGAPGSNSDVISVD 458

Query: 461 GSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
           G   +V +I E  P   + L++V   +    K  K  ++  ++A++L+ E  K GK   D
Sbjct: 459 GDRAFVLRIHEHKPEAVKPLKDVTAQITATLKQQKALQQAKTQADKLLAEL-KAGKG-DD 516

Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSYVV 573
             K           + RM       G D +SQ  FS P       P E   SY V
Sbjct: 517 ALKAADLKFAAQQTLTRM-------GQDALSQAAFSLP------LPSEGKPSYGV 558


>gi|15604653|ref|NP_221171.1| hypothetical protein RP822 [Rickettsia prowazekii str. Madrid E]
 gi|3861348|emb|CAA15247.1| unknown [Rickettsia prowazekii]
 gi|292572472|gb|ADE30387.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia prowazekii
           Rp22]
          Length = 528

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 182/405 (44%), Gaps = 25/405 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK S +++ ++   ++   F+ +G+ D L     S  V+    + +    F+ + 
Sbjct: 1   MLDNIRKTSDSFIMRVLFAIIAFAFVGFGIKDILNVRRNSDIVIFSHAKNISKQDFLQAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS+++G  +  E    + +D +IL  L+    LD  +    L+     V   + 
Sbjct: 61  SLEINAISKQMGKSLIDEEITQLNIDNRILKRLIYNNILDYLVSYYDLDLGDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F  ++F +      I E++Y+ ++ + + +  +V  F         + D
Sbjct: 121 ESPMFKNEQGVFDIEIFKTYFKNAYIGEEKYLLNFKEKVLKNLIVSTFAKSFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I L+ ++ P    I  P++  L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQLDLQNKPKDLQIHTPTDQQLKDFYQDNKAAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE----------QLVFPNQKEADEAF 287
           ++  K+ KI ++ DEL   Y +NK+++       V+          ++   N + A +  
Sbjct: 241 NI--KDFKISVTQDELLEFYNENKDEFGDQSFEAVQTQLHDLLRAKKIDILNMELAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL-------ADSIFSLAKKGDFTP 340
             +  G   ++++E+    + +++  S++ E I D  +       ADSIF L++     P
Sbjct: 299 DEIASGASLVEISEKYKLPIQNVNYVSYA-ELIGDNIMADNIAESADSIFELSEGELSYP 357

Query: 341 VIHGSFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
           +      Y+I   + +I+P+    F  + KD  N++ I +  E V
Sbjct: 358 IEAEDKSYLILVELKSIQPAQIPKFNAI-KDQVNKVWIKRNIEDV 401


>gi|120554754|ref|YP_959105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
 gi|120324603|gb|ABM18918.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
          Length = 617

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 122/531 (22%), Positives = 241/531 (45%), Gaps = 50/531 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS- 59
           ML+ IR  +++ +AK+ + +L +   IWG+   +   +G   V +V  Q +    F+ + 
Sbjct: 1   MLQDIRDNAQSTIAKVIVGLLIISLSIWGMDAIIGGFTGEPEVATVNGQDITEREFLRTV 60

Query: 60  ---WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
               +Q L  +  +   +++ ++ R     + +LD L+  A L Q  +  GLE     + 
Sbjct: 61  QMESQQRLMQMENRDQSLLDEDQIR-----RDVLDALIREAVLTQDAQSQGLELTDADID 115

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLA---------REGINEKEYIDHYTKMLSRTDVVGM 167
             I + P F   D +F+ D FV+ +          RE I +   ++     +++T VV  
Sbjct: 116 SLITQMPQFQ-VDGQFNRDRFVATVRNVGMGVAEFRESIRKNYVVNQIRAAIAQTGVVA- 173

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
                 P N     A     +N++ D+  + L+   V    D + A +  ++++  + +R
Sbjct: 174 ------PENA----AHLLAIQNQTRDFRVLTLDGSSVQDQVDVTEADVQAYYDENLNQFR 223

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEAD 284
            PE    +YI        + IE++ DEL+  YE+  E+Y   E R    LV   ++ +A 
Sbjct: 224 QPEQVDAAYITLSQGALAESIEVAEDELRTYYEERAEEYAREERRAAHILVEAGDEGQAT 283

Query: 285 EAF--QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFT 339
            A   Q L+KG+ F  LAEE          G    F+   + D +  D++F L ++G+ +
Sbjct: 284 LATIQQRLEKGESFAVLAEEYSVDTVSAQEGGDLGFAGRGVYDEAFEDALFGL-EEGEVS 342

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
             +  SFG  +  +  ++ S   +F E+++D+  ++  TKASE+  E   R +   A   
Sbjct: 343 GPVETSFGLHLIKLEEVRRSDVPAFDELREDLRLELARTKASERFAE--VRSQLADAAYA 400

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           + D     E++  +++ +V+   +D       A P+    L R    +D L   +   L 
Sbjct: 401 ADDLAGPAEEL-GLEIRVVEGVSRD-----GGAAPFDHAGLVRQLFSEDVLEGGYNTELI 454

Query: 460 D-GSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           D G  + V  +++E    R   L +V  ++++  +  +T + ++++ ++LV
Sbjct: 455 DVGDNVSVVARVREYHEPRQLALADVEPEIRRILERTETRDALAARVDELV 505


>gi|52425898|ref|YP_089035.1| SurA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307950|gb|AAU38450.1| SurA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 622

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 102/450 (22%), Positives = 199/450 (44%), Gaps = 46/450 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +  AS +  +KI   ++ V F++ G++  + + + +S  V +  +++   +F   +
Sbjct: 2   VMEKMHNASNSIFSKIIFALISVAFVVSGMAGYMVATADTS-AVKINGEEISQQAFQQQY 60

Query: 61  KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   +SQ++G     V      S GL K +L+ L+    L Q++ D+ L A    V  
Sbjct: 61  NDEYQRLSQQLGAQFSAVADTPEFSEGLRKSVLNRLIDQELLRQYVTDLKLVASDASVKQ 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG---MRP 174
           EI  +P F   D KF ++ +   L    +    Y ++  + L R D +   + G   M P
Sbjct: 121 EIVTTPAFQA-DGKFDNNAYQQTLRANNMTADMYAEYVREAL-RLDQLQSGLAGTVLMLP 178

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYRAPEY 229
           +    ++  + +F+ R+     L     P  A+ +   +T      ++   K  +  PE 
Sbjct: 179 AQQ--EEFAKLFFQKRTFRLAKL-----PLTAEMAKQTVTDQEVADYYNANKSAFMVPEL 231

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
            ++ Y+       EK +++++ E+Q  Y+ NK ++ S     +  + F  + +A +A+Q+
Sbjct: 232 VKVQYLDITRAAAEKAVKVTDVEIQQYYQDNKAQFVSKAQDRLAHIQFAKETDALDAYQA 291

Query: 290 LKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           L+ G  F  LA+E  KSL   S      LG  +   +P  +  ++  +L + G ++  + 
Sbjct: 292 LQNGADFAALAKE--KSLDKPSAVNGGELGWLNAGDLPK-AFEEAAAAL-QIGQYSQPVK 347

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI-----------TKASEKVKEDYKRLE 392
               Y I  + + K     S +EVK  IA+Q+R             + +EK  ED   LE
Sbjct: 348 VDNQYHIIKLEDRKEPKAQSLEEVKDLIASQIRQDLLNNQFYSLEKQVAEKAFEDQSSLE 407

Query: 393 EFLALG----TSMDEISRREKIVSIDLPLV 418
               +        D  SR++   +++ P V
Sbjct: 408 AAAKVAGVEIKETDYFSRKDIPAALNFPSV 437


>gi|161504371|ref|YP_001571483.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160865718|gb|ABX22341.1| hypothetical protein SARI_02482 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 623

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 136/650 (20%), Positives = 288/650 (44%), Gaps = 52/650 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q++  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P F   D +F ++ + + + + G+      D Y + L         + G+  +
Sbjct: 118 KQAIFATPAFQ-VDGRFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172

Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           + +L    D+      + R V    ++   + A    ++  ++ ++++ K  +  PE  R
Sbjct: 173 DFMLKGETDELAALVSQQRVVREATIDVNALAAKQQATDQEVSSYYDQNKTRFMTPEQFR 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +SYI  D    +  +  S+ ++QA Y+++ +++  PE      +    + +A     +L 
Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHLDQFTQPERHRYSIIQTKTEDDAKAVLDALN 290

Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           KG+ F  LA+E+   +     G           +P++  A     L +KG  + VI  S 
Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404
           G+++A + +++P+      EV+ DIA +++     EK  + Y  L++ ++   S D   +
Sbjct: 347 GFLVARLDDVQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463
           +  E++  +      +   D   +E+   P  + +    + G++     +  +   DG  
Sbjct: 403 AGAEQVAGVKAVETGWFSHDNLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462

Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V++ E  P   + L  V   V    K  K  ++    A +L++E  K GK    + K
Sbjct: 463 AFVVRVSEHKPEAVKPLAAVKEQVIALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577
             G S      ++R          D +SQ     S P +    + + N +  + V+  + 
Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNIVLLALD 573

Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 574 EVKAGSMPEAQKKAMMQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|90407416|ref|ZP_01215600.1| putative peptidyl-prolyl cis-trans isomerase D [Psychromonas sp.
           CNPT3]
 gi|90311447|gb|EAS39548.1| putative peptidyl-prolyl cis-trans isomerase D [Psychromonas sp.
           CNPT3]
          Length = 635

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 184/406 (45%), Gaps = 17/406 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ S+   AKI L+V+ + F + G+S  L     +S  ++V   ++  +S    +
Sbjct: 1   MLDKMREGSQGIAAKIILIVIILSFALAGVSGYLGG-GNASVAITVNGDEISNASVEQEY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKIL----DNLVSGATLDQFIEDIGLEADHGRVW 116
           K E   + Q+ G   +   A S G  K++       L+S   + Q I D+ L     +V 
Sbjct: 60  KNERSRLQQQYGEQFDI-IAASPGFVKQVRAQAKQTLISNLLIAQSIADMDLRIGDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I + P F  K  +F+++ ++S L R      ++     + L R  ++   V       
Sbjct: 119 DAIRKMPEFQVK-GEFNNEQYLSTLRRASYTPAKFSQSIKQDLVRRQLLNTLVSSEFILP 177

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
           + +D   +   + R    + ++ R  P     S   +  ++++++ N+++ +   + Y+L
Sbjct: 178 IEIDNVDKLQAQQRVARILNISGRAFPQTTPISIKDIQAYYDQHEQNFQSLQQVSVDYVL 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-----KEADEAFQSLK 291
            D H+  +K  IS+ + QA Y+ ++  Y   E R V  ++         K+A     +L+
Sbjct: 238 LDAHKLSQKTVISDVQAQAYYDDHQVDYQRVERRKVAHILVQGHSADALKKAQTILLALE 297

Query: 292 KGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           KG  F  LA  + + +    +D +L  F +  + D     + F+L  K   + ++  +FG
Sbjct: 298 KGADFSVLARAKSEDILSAKNDGALDWF-EHGVMDEQFDKASFALTAKAPLSDIVKSTFG 356

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           Y I  + +I+   T+ F +VK  +   ++   A E+  +  ++L E
Sbjct: 357 YHIIKLLDIQQKQTLPFAQVKATVMKTLKKENADERYYDLQQQLRE 402


>gi|153831363|ref|ZP_01984030.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 623-39]
 gi|229529056|ref|ZP_04418446.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae 12129(1)]
 gi|148873155|gb|EDL71290.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 623-39]
 gi|229332830|gb|EEN98316.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae 12129(1)]
          Length = 619

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 107/515 (20%), Positives = 216/515 (41%), Gaps = 14/515 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G       
Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F  LA+E+ + L   + G       PD    +   + F+L +KG  + ++   FGY I  
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           + +IK      + EV++ I  ++   +A +        LE+ +A   S D +    K +S
Sbjct: 359 LDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
             +   DF   + +  EV   P   Q L     K+D L+ +     P+   +    +   
Sbjct: 417 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           P     L+EV + V +    +K  ++     NQLV
Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509


>gi|326316510|ref|YP_004234182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373346|gb|ADX45615.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 642

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/412 (21%), Positives = 182/412 (44%), Gaps = 37/412 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M E IRK S+  V  I L +L +P F++ G+    F+ S S+ V  V    +    + N+
Sbjct: 1   MFESIRKHSK--VVMIVLFLLIIPSFVLVGIDRNYFT-SKSAVVARVDGHDITQDDWDNA 57

Query: 60  WKQELGMISQKIGFV----VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + E   I  +   V    ++S RAR   L++ + D ++  A +   +  +  +A   R 
Sbjct: 58  HRMETDRIRAQSPSVDARLLDSPRARYATLERLVRDRVMQAAAVKMHL--VTSDAQLART 115

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG----G 171
              I         D     + + + +  +G+  + + ++  + LS + V+G  +G     
Sbjct: 116 LQGIPAIAALKRPDGSLDAEAYRALVGSQGLTPEGFENNVRRELSLSQVMGGVMGSAFAA 175

Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
             P+ L LD      ++ R +     + +   A   P++  L  +++ ++  +R PE+  
Sbjct: 176 QEPARLALDS----LYQRREIRVARFDAKDFAAKVTPTDDELQAYYKAHEAQFRQPEHAD 231

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           + Y++ D+      I +S D+L++ Y++N E+    E R    ++    K+A  A +   
Sbjct: 232 VQYVVLDLDAVRASITLSEDDLRSYYKENLERLAGKEERRASHILINAPKDAPAADREKA 291

Query: 292 KGKK-------------FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           K +              F ++A    ++ G + S   LG F +  +      D+ FS+ K
Sbjct: 292 KARAQALLEQVRKAPNTFAEVARKNSQDSGSAPSGGDLGFFKRGDMVK-PFEDAAFSM-K 349

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           KGD + ++   +GY I  ++++K     +F+EV+  +  + +  +A  K  E
Sbjct: 350 KGDISDLVESEYGYHIIQLNDVKTPKQPTFEEVRAKLETEAKQQQAQRKFAE 401


>gi|303249065|ref|ZP_07335308.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           fructosovorans JJ]
 gi|302489530|gb|EFL49472.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           fructosovorans JJ]
          Length = 654

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 114/537 (21%), Positives = 230/537 (42%), Gaps = 48/537 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK +++W  KI   ++ + F+ WG+    F    ++ + ++  Q V    +  ++
Sbjct: 1   MLDPMRKYAQSWGIKIVFGLIILVFVFWGVGS--FRGDKATVLATIDGQPVLIKDYEKAY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++   ++  K   + + E  +  G   ++  N+V+   L++  + +G+      +  EIA
Sbjct: 59  REAQRLVKNKNPDITDKE-LQDGGFRWQVFSNMVTSRLLEEQAKKLGVSVSADELRAEIA 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F  K  KF    + + L    +   E+   + + L    + G FV    P+++   
Sbjct: 118 KIPAFQDKSKKFDAKRYENLLRANDVTPGEFEADFRQNLLLEKLAG-FVS--LPASVSEA 174

Query: 181 QAKR---FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +A+    F  E   + YI+           P++  +  ++E  KD +  P   +I Y+ F
Sbjct: 175 EARSIFDFMREQAVIKYIMFKAEDFDKGITPTDEQIKAYYEARKDQFATPAKIKIDYVEF 234

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ--LVFPNQ--KEADEAFQS---- 289
                 +  ++++ +++A Y+ N++KY  PE   V    ++ P    K A +A  +    
Sbjct: 235 TPKALAQPDKVTDADIEAYYKANQKKYARPEQVKVRHFLIMLPADAPKSAVDAATAKLKD 294

Query: 290 ----LKKGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
               LK G  F  L  +         G+  + +  GS  KE+ P     +  FSL K G+
Sbjct: 295 IAAKLKAGAAFASLLPKNPNNADGLIGEDWAWLPKGSLPKEFGP---FEEKAFSL-KNGE 350

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
            +  +  + G  +      + +      EVK DI  ++   KAS+K+ +    +++ +A 
Sbjct: 351 ISEPVRTALGLHLIQAGERQAAGERPLSEVKDDIREELAERKASDKLTQSLDNMQDKIAS 410

Query: 398 GTSMDEISRREKIVSIDLPL--VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           G  + + +  EK     LP+   DF  KD    ++      +Q L  +F        D  
Sbjct: 411 GVDLGKAAADEK-----LPVKSADFFSKDNPPTDLG---LSDQALGVLFSMKKGAVSDTP 462

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
           ++  DG ++  ++ +  PA  + L+    DVK+  K    A+E   +A     E +K
Sbjct: 463 LSTQDG-FLLARVSDIQPAGFQSLD----DVKEAIKQRLIADEAQKRARAKADETAK 514


>gi|292487473|ref|YP_003530345.1| putative protease maturation protein [Erwinia amylovora CFBP1430]
 gi|292898715|ref|YP_003538084.1| peptidyl-prolyl cis-trans isomerase D [Erwinia amylovora ATCC
           49946]
 gi|291198563|emb|CBJ45671.1| peptidyl-prolyl cis-trans isomerase D [Erwinia amylovora ATCC
           49946]
 gi|291552892|emb|CBA19937.1| putative protease maturation protein [Erwinia amylovora CFBP1430]
          Length = 623

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 122/536 (22%), Positives = 231/536 (43%), Gaps = 43/536 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R AS     KI L ++ + F++ G+   L   SG      V  Q++  + F  ++
Sbjct: 1   MMDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSGD-YAAKVNGQEISRAQFERAF 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E     Q +G    V+         + ++ L  L+    L Q+ +DIGL     ++  
Sbjct: 60  SSERARQQQMLGEQFSVLAGNDGYMQQMRQQALSQLIDEMLLTQYAKDIGLTISDDQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F     KF +  ++S +   G    +Y +   K L+   ++    G    ++ 
Sbjct: 120 AIFTQPAFQTA-GKFDNAKYISIINNMGFTADQYAEALRKQLTTQQLIESVTG----TDF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           +L    D       + R V  + +N   + A  + +   +  ++++++ +  + E  R+S
Sbjct: 175 VLGNEADSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSSEQFRVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D    ++ +  S  ++Q+ YEK++  Y  P+      +    + EA      LKKG
Sbjct: 235 YIKMDAATMQQPV--SESDIQSWYEKHQGDYTQPQRNRYSIIQTKTEAEARSVLDVLKKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F +LA+E  KS   IS      +G    E  PD  L  +  +L +KG  + VI  S G
Sbjct: 293 GDFARLAKE--KSADPISARNGGDMGWLEPETTPD-ELKRA--ALKEKGQLSGVITSSVG 347

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EIS 405
           +++A + + +P    +  EV  DIAN+++     EK    + +L++ ++   S D   ++
Sbjct: 348 FIVARLDDTQPEKVKALSEVHDDIANKLK----QEKAVVAFYKLQQKVSDAASNDNESLA 403

Query: 406 RREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
             E+   +      + G D     +K K V    +   LL    G++     +  V   D
Sbjct: 404 SAEQAAGVKAVETGWFGHDNIPAELKFKAVQDAIFNGALL----GENAAPGSNSDVITVD 459

Query: 461 GSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           G   +V +I E  P   + L++V   +    K  K  ++  ++A++L+ E  K GK
Sbjct: 460 GDRAFVLRISEHKPEAVKALQDVTAQITDTLKQQKGLQQAKAQADKLLAEL-KAGK 514


>gi|119774365|ref|YP_927105.1| peptidyl-prolyl cis-trans isomerase D [Shewanella amazonensis SB2B]
 gi|119766865|gb|ABL99435.1| peptidyl-prolyl cis-trans isomerase D [Shewanella amazonensis SB2B]
          Length = 615

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 187/405 (46%), Gaps = 34/405 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFI 57
           MLE IR+ ++  +AK  LV++ + F   G+S  L    GSST     +V  +++P S+  
Sbjct: 1   MLEKIREGAQGTIAKSILVLVILSFAFTGVSSYL----GSSTEPAAATVNGEEIPVSALE 56

Query: 58  NSWKQELGMISQKIGFVVNSERA-----RSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
            +++ E   + Q++G +  +  A     RS+   + +L+ +++   LDQ   ++GL    
Sbjct: 57  QAFQNEKARMEQQLGEMFQTLAADDNYLRSI--RQGVLERMIADKLLDQTASEMGLRISD 114

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
            ++   I   P F   + KF ++ +++ L + G     + D     ++R  +V   +G  
Sbjct: 115 EQIKQAIMEEPAFQ-TEGKFDNERYLAILRQLGYQTNSFRDMMRVDMTRRQLVNALIG-- 171

Query: 173 RPSNLLLDQAKRFYFE----NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
             S  +L    +   E     R + Y+V+ ++   A    ++     +++   D +  PE
Sbjct: 172 --SEFVLPSESKAVAELQGQTRDLRYLVVESQPFEAGITVADDEAKSFYDANPDQFIKPE 229

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQK 281
              + Y+         ++ +++++ +A Y+++  +Y +PE R    ++          + 
Sbjct: 230 QVSLEYLTLSAKSLADEVSVTDEQAKAYYDEHMSQYKTPEKRLAAHILVNLGDDEAAAKT 289

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDF 338
           +AD  +  L+ G  F +LA+   +      LG    + ++ + D +  +++F L +K  +
Sbjct: 290 KADAIYAKLQAGADFAELAKTDSEDTFSGELGGQLDWFEQGVMDPAFDEALFGL-EKDQY 348

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           + V+   +G+ I  + +++     SF EVK  I  Q++   A +K
Sbjct: 349 SAVVKTDYGFHIIKLLDVQGGAQASFDEVKDRIFAQIKEKDALDK 393


>gi|256830955|ref|YP_003159683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580131|gb|ACU91267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 632

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 141/666 (21%), Positives = 287/666 (43%), Gaps = 86/666 (12%)

Query: 1   MLEIIRKASRTWVAKI-FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+I+R+ +++W  KI F +++ V  L +G++        ++ V +V    + F  F   
Sbjct: 1   MLDILRQGAQSWGIKILFGIIIAVFVLAFGMNR--VQNDQTTVVATVNDSPILFRPFQER 58

Query: 60  WKQELGMI-SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            ++ L +  SQ       +E    +G  ++IL+ +V    + Q    +GL      +  E
Sbjct: 59  LQRSLELARSQNPNLT--AEILAQMGFKRQILEQMVIEELMMQQAAKLGLTVSKEELAKE 116

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I   P F  + N F    + + L    +   ++   Y + +   D +  +VG   P  L 
Sbjct: 117 IHLIPAFQNESNVFDPASYQNVLRANNLTPGKFESEYMRGMV-MDKLRTYVG--LPGRLG 173

Query: 179 LDQAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            DQA+ FY   RS   + Y++    +     + ++A + +++E  K NY  P   +I Y+
Sbjct: 174 EDQARDFYTYGRSTATISYLMYPWENYQNQVNATDARINEYYEARKANYAVPARAKIDYL 233

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-----AFQSL 290
           L           +S +E +  Y + KE++   E      L+    + ADE     A Q++
Sbjct: 234 LLTPATLADPAAVSPEETEKYYAEQKEQFKIEEQVKASHLLVRVDENADEESVEKAMQTI 293

Query: 291 K-------KGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           K        GK F ++A    E+   + +   LG F +  +      D+ F+L +KG  +
Sbjct: 294 KAAQKDLAAGKSFAEVAAQYTEDPSGTQTGGELGWFGRGRMVK-PFEDAAFAL-EKGAVS 351

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
             +   FG+ +  V + K +   +++ V  DIAN +   +A+E +++   +  E + +G 
Sbjct: 352 EPVRTQFGFHLITVEDTKSAGYENYESVASDIANIIAEDRAAEILQDRLDQALEMVLVGE 411

Query: 400 SMDEISRREKIVSIDLPL--VDFAGKDVKGKEVAAI-PYKEQLLFRVFGKDDP--LSKDH 454
            +D +    K + + L +   D+  K+   +++  + P   Q+LF     D P  ++   
Sbjct: 412 PLDAVV---KAIGLKLEIRESDYFTKNQGPRDLPGLSPENAQVLF-----DLPQDITTQS 463

Query: 455 TVALPDGSYMWV---QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
            + + DG  +     Q+ ES+   +    E++  + +D + +K A+  + K  +L+L+  
Sbjct: 464 PLPIADGYLLATKREQVAESVKPLEAVKAEIVAAITRD-EALKVAKAAADKDLELLLK-- 520

Query: 512 KEGKNFRDIGKNL-GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL- 569
                    G+ L GA++  T    R    N      G++Q+ +      K F  ++G  
Sbjct: 521 ---------GETLTGATVKETEPFGRQGTINGL----GMNQLLA-----TKAFETKSGAW 562

Query: 570 ---------SYVVFKVTNSKVGP------VQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
                     YV+ K    +V P        EK+ +++ L +   +  + + +A L+++ 
Sbjct: 563 LPEAYAFPEGYVLAKAI--QVTPPADEDWAAEKELWLTSLNERAEEQTMQAFVADLRAKA 620

Query: 615 SVTVHD 620
            V + +
Sbjct: 621 DVRITN 626


>gi|304395503|ref|ZP_07377386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB]
 gi|304356797|gb|EFM21161.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB]
          Length = 622

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 117/561 (20%), Positives = 248/561 (44%), Gaps = 53/561 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL------FSVSGSSTVVSVGRQKVPFS 54
           M++ +R AS   V KI L ++ V F++ G+ + L      ++   +   +S G+ +  F+
Sbjct: 1   MMDNLRAASNNVVLKIILGLIMVSFVLTGVGNYLIGGNNDYAAKVNGQEISRGQLEQAFN 60

Query: 55  SFINSWKQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
           S  +  +Q LG     ++   G++          + ++ L  L+  A LD +I+D+ L  
Sbjct: 61  SERSRQQQMLGDQFSQLASNDGYMQQ--------IRQQALSQLIDQALLDSYIKDLHLSI 112

Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
              +V   I     F   + KF +  +++ +   G +  +Y +   K LS   ++     
Sbjct: 113 SDDQVKQAIFNQQAFQ-TNGKFDNAKYLALIGNMGFSADQYAEALRKQLSNQQLINAVAN 171

Query: 171 G----MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
                   ++ L+D       + R +    L+   + A    ++  ++Q+++++K ++ A
Sbjct: 172 TDFTLKGEASKLVD----LVSQQRDIRQATLDVNALAAKQTVTDDEISQYYQQHKTSFMA 227

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           PE  R+SYIL D    ++  + S  ++QA Y+++K  Y  P+      +    + +A+  
Sbjct: 228 PEQFRVSYILMDAASMQQ--DASEADIQAWYDQHKADYTQPQRTRYSVIQTKTEADANAV 285

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
              LK G  F  +A+   KS+  IS      +G       PD  L ++   L +KG  + 
Sbjct: 286 LAQLKGGASFADVAK--AKSIDPISARKGGDMGWLEPSTTPD-ELKNA--GLTQKGQMSG 340

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
           VI  S G+++  + +I+P       +V+  IA +++     EK  + + +L++ ++   S
Sbjct: 341 VIKSSVGFLVVRLDDIQPEQVKPLNDVRSAIAAKVK----QEKGVDAFYKLQQKVSEAAS 396

Query: 401 MDE--ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTV 456
            D   ++  E+   +      +  +D     +     K Q +F   + G++     +  +
Sbjct: 397 NDNESLAGAEQASGLKAKETGWFSQDTLPDALNFDAVK-QAIFNGGLVGQNGAPGNNSDI 455

Query: 457 ALPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
              DG   +V +I E  P   + L++V   +    K  K  ++  ++A++L+ +  K GK
Sbjct: 456 ITVDGDRAFVLRISEHKPEAVKPLDQVKAQITDTLKHDKATQQAKAQADKLLTDL-KAGK 514

Query: 516 NFRDIGKNLGASLLTTNQINR 536
             +D     G +L  +  ++R
Sbjct: 515 --QDALTAAGLTLSASKTVDR 533


>gi|326622155|gb|EGE28500.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 611

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 128/616 (20%), Positives = 268/616 (43%), Gaps = 50/616 (8%)

Query: 35  FSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG----LDKKI 89
           + + GS+   + V  Q +  + F N++  E   + Q++G    SE A + G    L +++
Sbjct: 21  YLIGGSNNYAAKVNGQGISRAQFENAFNNERNRMQQQLGDRY-SELAANEGYMKSLRQQV 79

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
           L+ L+  A LDQ+  ++ L     +V   I  +P F   D KF ++ + + + + G+   
Sbjct: 80  LNRLIDEALLDQYSRELKLGISDEQVKQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT-- 136

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFYFENRSVDYIVLNNRHVPAI 205
              D Y + L         + G+  ++ +L    D+      + R V   V++   + A 
Sbjct: 137 --ADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNALAAK 194

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              ++  ++ ++++ K  +  PE  R+SYI  D    +  +  S+ ++QA Y+++ +++ 
Sbjct: 195 QQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLDAATMQAPV--SDADIQAYYDQHVDQFT 252

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS-----FSKEYI 320
            PE      +    + +A     +L KG+ F  LA+E+   +     G           +
Sbjct: 253 QPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATV 312

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           P++  A     L +KG  + VI  S G+++A + +I+P+      EV+ DIA +++    
Sbjct: 313 PELKNA----GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVK---- 364

Query: 381 SEKVKEDYKRLEEFLALGTSMDE--ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
            EK  + Y  L++ ++   S D   ++  E++  +      +  +D   +E+   P  + 
Sbjct: 365 QEKALDAYYALQQKVSDAASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADA 424

Query: 439 LL-FRVFGKDDPLSKDHTVALPDGSYMW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           +    + G++     +  +   DG   + V++ E  P   + L EV   V    K  K  
Sbjct: 425 IFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAE 484

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ---VF 553
           ++    A +L++E  K GK    + K  G S      ++R          D +SQ     
Sbjct: 485 QQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQ-------DPVSQAAFAL 535

Query: 554 SGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAY 609
           S P +    + + N +  + V+      K G  P  +K   +  +TQ   + + +++++ 
Sbjct: 536 SLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSN 595

Query: 610 LKSQYSVTVHDNLIQR 625
           L+ +  + + D L Q+
Sbjct: 596 LRKEAKIKIGDALEQQ 611


>gi|153827658|ref|ZP_01980325.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MZO-2]
 gi|149737864|gb|EDM52769.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MZO-2]
          Length = 592

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 107/515 (20%), Positives = 217/515 (42%), Gaps = 14/515 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G     + 
Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +   E  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRSEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F  LA+E+ + L   + G       PD    +   + F+L +KG  + ++   FGY I  
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           + +IK      + EV++ I  ++   +A +        LE+ +A   S D +    K +S
Sbjct: 359 LDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
             +   DF   + +  EV  IP   Q L     K+D L+ +     P+   +    +   
Sbjct: 417 ATVVHTDFISAE-QAPEVLTIPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           P     L+EV + V +    +K  ++     NQLV
Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509


>gi|332185866|ref|ZP_08387613.1| hypothetical protein SUS17_824 [Sphingomonas sp. S17]
 gi|332014224|gb|EGI56282.1| hypothetical protein SUS17_824 [Sphingomonas sp. S17]
          Length = 650

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 106/498 (21%), Positives = 198/498 (39%), Gaps = 21/498 (4%)

Query: 4   IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWK 61
           II   +   V  I L V+ + F    +S+      G   STV  VG  KV       + +
Sbjct: 8   IINSKAGVIVTFIVLGVIAIAFAAGDVSNIAGMAGGLTGSTVAKVGSAKVTVDDLRTAAQ 67

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            E+    Q+   +  ++   + G +  +L   V+G +L+QF +D G+      V G+IA 
Sbjct: 68  NEVAAYRQEQPTLDMAQFIAAGGFEG-VLQREVTGLSLEQFGKDQGMVVSRRLVDGQIAS 126

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P F G + +F   ++   LA+  + + +      + L    +    +G  + ++ +   
Sbjct: 127 IPAFRGPNGQFDPALYQQLLAQRKMTDAQVRTDLQRTLFAQQLTVPTIGATQMASQMALP 186

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R  +   +  R V A   PS+A +  ++ +    Y  PE + + Y L     
Sbjct: 187 YASLLLEKRQGEVGYIPTRLVNAGGAPSDADIQTFYSRNVQRYTLPERRVVRYALVTPSA 246

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
              +   ++ E+   Y+ N  +Y + + R V Q++  +Q  A+      K G    + A 
Sbjct: 247 IAAQSAPTDAEIARYYQTNAARYAATQKRDVTQVIVADQAGANALATRAKGGASLAEAAR 306

Query: 302 EQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
             G   S    +   +++ +  P V  AD++F  A+     P I G  G+V+A V  +  
Sbjct: 307 AAGLEASVQKGVDKATYATQSAPAV--ADAVFGAAQGAVVGP-IRGPLGFVVARVDAVTQ 363

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
               +  + + +I  ++   K +  + E    +E+ L+   + DE+    K+ +   P V
Sbjct: 364 VPGKTLAQARPEIVTELTKQKQTAALGEMRNAIEDSLSGNATFDEVIADRKLQAQATPAV 423

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP---DGSYMWV---QIKESI 472
              G             +  ++   F  +D    D    +P   DG +  V   QI+ S 
Sbjct: 424 TAQGAAPDAPAFQPSAEQRAMITAAFTAED---GDAPQIVPIGQDGGFAVVGVGQIQRSA 480

Query: 473 PARDRKLEEVLTDVKKDW 490
           P   R L +V   V  D 
Sbjct: 481 P---RPLAQVRQQVIADL 495


>gi|156935006|ref|YP_001438922.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156533260|gb|ABU78086.1| hypothetical protein ESA_02857 [Cronobacter sakazakii ATCC BAA-894]
          Length = 625

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 123/541 (22%), Positives = 233/541 (43%), Gaps = 53/541 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+S+ L     S+    V  Q++  +   N+ 
Sbjct: 1   MMDNLRAAANHVVLKIILGLIILSFVLTGVSNYLIG-GNSNYAAKVNDQEISRAQLENAV 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + +++G     + S       L ++ L  L+  A +DQ+   + L     +V  
Sbjct: 60  NIERNNLERRLGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLNISDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   D KF +  + + +   G++  +Y       L+   +V   +G    S+ 
Sbjct: 120 SIFKNPAFQS-DGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVMG----SDF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           +L    DQ    + + R V    +    +      S   +  +++++ +N+++PE  R+S
Sbjct: 175 ILPGESDQFAALFAQQRQVRTATIAVDALAQKQQVSEQEIKDYYQQHTNNFQSPEQFRVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D     +    S DE+QA Y+K+++++  P+      +    + EA      LK+G
Sbjct: 235 YIKLDAAALAENA--SEDEIQAYYDKHQDEFGQPQRNRYSLIQTKTEDEAKAILAQLKQG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  LA+E  KS+  I+      +G       PD    ++   L +KG  + VI  S G
Sbjct: 293 ADFATLAKE--KSVDVITARNGGDMGWLEPGTTPD-EFKNA--GLKEKGQLSDVIKSSVG 347

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL--------GT 399
           ++I  + +I P+      EV  DI         S KVK++ K L+ F AL          
Sbjct: 348 FLIVRLDDITPATVKPLSEVHNDI---------SAKVKQE-KALDAFFALQRKVSDAANN 397

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVAL 458
             + ++  EK   +      +  +D   +E+   P  + +    + G++     +  +  
Sbjct: 398 DNESLASAEKAAGVKAVETGWFSRDAVPEEINFKPVADAVFGGNLLGENGTPGSNSDIIT 457

Query: 459 PDGSYMWV-QIKESIPARDRKLEEV---LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
            DG   +V +I +  P  ++ L EV   +T + K  K +K A E +    Q +L   K G
Sbjct: 458 VDGDRAFVLRITDHKPQAEKPLAEVKDQVTALVKHQKALKAANEEA----QNLLSALKAG 513

Query: 515 K 515
           K
Sbjct: 514 K 514


>gi|237748739|ref|ZP_04579219.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes OXCC13]
 gi|229380101|gb|EEO30192.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes OXCC13]
          Length = 647

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 138/658 (20%), Positives = 267/658 (40%), Gaps = 69/658 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR   R  + +I L+V  +P  I+   +          V  V  + +    + N+ 
Sbjct: 1   MLEFIRNHKR--LTQIILLVFIIPSFIFVGVEGFKRFGDGDAVAKVAGKSITQQEWDNAQ 58

Query: 61  KQELGMISQKI---GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++   + Q+    G   +++   S      +L NL+    L + +    L      V  
Sbjct: 59  REQAERLRQRAAASGQPFDNKWIESSEFKWNVLQNLIVKRVLLETVNKENLSVPEQIVLQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P   G D K     +   LA +G+N     D +  M+ +   +      +  S +
Sbjct: 119 RIREIPGLIGPDGKLDEARYKEALAAQGLNP----DMHFAMVRQDMAIQQLAAPIEYSAI 174

Query: 178 ----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               +  +    + + R V ++  NN    +    ++  L  +++ ++  +  PE+  + 
Sbjct: 175 EPTAVTQRVFNLFEQEREVQHLFFNNAAYRSKVSVTDEELNAFYKAHEAQFTIPEHADVE 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
            I+ D+    K I+IS+ +LQ+ Y +NK+++  PE R  + ++    K A EA +S  K 
Sbjct: 235 VIVLDMPSVAKNIKISDADLQSYYSQNKDRFSIPEERRAQHILIAVNKNATEAEKSEAKK 294

Query: 294 K-------------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           K             +F +LA    ++ G + +   LG F++  +      D++F + KKG
Sbjct: 295 KAEGILAELKANPARFAELAKANSQDPGSAQNGGDLGFFTRGKMVK-PFNDAVFGM-KKG 352

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL- 395
           D + ++   FGY I  VS+IKP+      +V+  +  ++   +A+ K  E  +     + 
Sbjct: 353 DISDLVQTDFGYHIITVSDIKPAVAKPLAQVRDRVLQELTREQANRKFAEMSETFSNMVY 412

Query: 396 ALGTSMDEISRREKIVSIDLP-LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
               S+  ++   K+     P L        K  ++ A P   ++L  +F  D    K +
Sbjct: 413 EKPDSLKPVADALKLTIHSFPNLARDPAIAAKQNQLLANP---KILQAIFTDDVVKGKHN 469

Query: 455 TVALPDGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV----- 507
           T A+     + V  +I +  PA     ++V        K V TAE ++ KA +L      
Sbjct: 470 TEAIEAAPQVLVAARIAKHYPATLTPFDKV--------KQVITAEVINEKAQKLAKAAGE 521

Query: 508 --LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
             L   KEG N      ++  S       NR +          ++ V    V  +  +  
Sbjct: 522 AELAKLKEGSNANGFSSSIMVSRHKIAMANRAE----------LAPVMKADVSKLPAYVG 571

Query: 566 EN--GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN---KDLLDSVIAYLKSQYSVTV 618
            +  G+ YV++++T        +K+   +   QM N   +  L++ + YLK +  V +
Sbjct: 572 ADVPGMGYVIYRITKVVTPSNPDKNLREAMSKQMANVASQQDLNAYLNYLKKEAKVEI 629


>gi|85058653|ref|YP_454355.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Sodalis
           glossinidius str. 'morsitans']
 gi|84779173|dbj|BAE73950.1| peptidyl-prolyl cis-trans isomerase D [Sodalis glossinidius str.
           'morsitans']
          Length = 617

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 130/635 (20%), Positives = 273/635 (42%), Gaps = 46/635 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++   F++ G+ + L    G      V  Q++  S    + 
Sbjct: 1   MMDNLRAAANHVVLKIILGLIAFSFVLTGVGNYLIGGDGD-YAAKVNGQQISRSQLEQAV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E     + +G   +   A    + +++L  L+    LDQ+ + +GL     ++   I 
Sbjct: 60  QNERNRQQEAMGEQFSQLAANEGYMRQQVLSQLIDETLLDQYADKLGLAISDDQIKQAIF 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL- 179
               F  +D KF +  F S +   G++     D Y  ++ +  +    + G+  +  LL 
Sbjct: 120 AILAFRTED-KFDNAKFRSLIGNMGLSP----DQYATLMRKQLLTQQLIQGIGGTGFLLP 174

Query: 180 ---DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
              D+      + R     +     + A    S+  +   +  YK+ Y +PE  ++SYI 
Sbjct: 175 AETDRLLEVAVQTREARLAMFAIAALAAKQTASDDEIQASYNAYKNQYLSPEAFKVSYIP 234

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
            D    + K  +   E+QA Y+++ +++  P  +    +   ++ +A++  + L++G  F
Sbjct: 235 MDAETMQTKTTVDEQEIQAWYDQHHDQFTVPGRKRYSIIQSKSENDANDWLKQLQQGADF 294

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVS 354
             LA+     +     G     ++ D    D +   +L++KG  + VI  S G++I  + 
Sbjct: 295 ASLAKAHSTDVVSAKNGG-DIGWMSDSDTLDELKQANLSQKGQLSGVIKSSVGFLIIRLD 353

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRREKIVS 412
           +++P+       V  ++A +++     EK  + Y  L++ ++   S D   ++  E    
Sbjct: 354 DMQPAQVSPLSAVHDEVAAKVK----QEKAIDAYYALQQKVSDAASNDNETLASAETAAG 409

Query: 413 IDLPLVD-FAGKDVKGKEVAAIPYK--EQLLFRVFGKDDPLSKDHTVALPDGSYMWV-QI 468
           I     D F+  DV     AA+ Y   +Q+LF    +   L  +  V   DG+  +V +I
Sbjct: 410 IKAQQTDWFSHDDVP----AALNYDAVKQVLF----QGSLLGSNSDVITVDGNRSFVIRI 461

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
            E  P R + LE+V   V+++ K  K  E+    A + ++   ++        + L A+ 
Sbjct: 462 AEHRPERVQPLEDVRARVEQEVKRQKALEQARVDAEKALVALKQDKGT-----EALQAAG 516

Query: 529 LTTNQINRMDNENKFFGYDGISQ-VFS--GPVEMVKCFPIENGLSYVVFKVTNSKVGPV- 584
           L+ +   + D+ N+    D ++Q VF+   P      + + +     +  +    V P  
Sbjct: 517 LSFSAPQQFDSANQG---DPLAQTVFTLPQPPHGKSSYGMASNAQGDIVLIALDSVTPRT 573

Query: 585 ---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
              Q++ +F+  L Q M     D+++  L+++  +
Sbjct: 574 LEEQQRKQFVDQLNQGMTGVAFDALLENLRAEAKI 608


>gi|332971823|gb|EGK10770.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           1501(2011)]
          Length = 624

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 116/552 (21%), Positives = 235/552 (42%), Gaps = 36/552 (6%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF---IN 58
           +E IR   ++W  +IFL++   P +I GL       + ++ V +VG Q +  + +   IN
Sbjct: 1   MESIRNFLQSWPGRIFLMLCLSPLVILGLESYFTGSANANDVATVGDQTITRAEYQDAIN 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           + + EL      +   V +    +  L++++L  L++ A L      +G+      +   
Sbjct: 61  TRRNEL------LQNGVEASAINTNALNREVLKGLINRALLRNQSGQLGMHVSDKVINDL 114

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV-VGMFVGGMRPSNL 177
           + + P F  ++ +FS+D F   L ++G+ + +  D Y + L+   +  G+    + P + 
Sbjct: 115 LLQDPQFLDENGQFSNDRFAFSLQQQGMTKDQLFDQYRQQLNLMQLYAGVAQTAIYPESE 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           + D       E R V    L           S   +  ++ ++K++  +     ++YI  
Sbjct: 175 INDLLA-LQLETRDVWVYRLPWEQYKDKVSVSAKEIENYYNEHKNDLNSVAMVDLAYIQL 233

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS----LKKG 293
           D   K    +++  E+QA+Y+  K  Y     + + Q++    K A++  Q     LK+G
Sbjct: 234 D-PAKVAVDKVTEKEIQAQYDAFKANYKGAANQKLSQILITGDK-AEQTIQQIQKRLKQG 291

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD------SIFSLAKKGDFTPVIHGSFG 347
           + F  LA++  +     + G     + PDV  AD      +I  L K     PV   SFG
Sbjct: 292 ESFAALAKQYSEDPISAAKGGDIGTFNPDVFGADGAKVAKAIEGLNKDQISAPV-KTSFG 350

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y +  V+ +      S   +++++  Q +  K  + + +   R+ E    G  +++I+++
Sbjct: 351 YQLFKVTEMSGDSVPSLASMREELVAQAQRQKREQLIADKITRINEMAIDGVGIEDIAQQ 410

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
           E++    +      G      + A I       F  F   D  S   ++ + +G+ +WVQ
Sbjct: 411 EELTVQKIKNYTKVGNKTALGQPAVIDAA----FDDFALQDE-SVSASIKVNNGT-IWVQ 464

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG-----KNFRDIGK 522
                P +   L++   D+K      K  E+  + A  +    + +G      NF+ +G 
Sbjct: 465 PTNYRPVKPLTLQQASADIKNILVKQKATEQALAAARNISKTVNDKGMQAVQANFKSLGN 524

Query: 523 -NLGASLLTTNQ 533
            N    LL+T++
Sbjct: 525 INRKNPLLSTDE 536


>gi|15641920|ref|NP_231552.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121591616|ref|ZP_01678864.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 2740-80]
 gi|121727851|ref|ZP_01680918.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae V52]
 gi|147674490|ref|YP_001217451.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae O395]
 gi|153820108|ref|ZP_01972775.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae NCTC 8457]
 gi|153823840|ref|ZP_01976507.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae B33]
 gi|227082048|ref|YP_002810599.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae M66-2]
 gi|229507986|ref|ZP_04397491.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae BX
           330286]
 gi|229511777|ref|ZP_04401256.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae B33]
 gi|229518914|ref|ZP_04408357.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC9]
 gi|229607532|ref|YP_002878180.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae MJ-1236]
 gi|254849006|ref|ZP_05238356.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MO10]
 gi|255745323|ref|ZP_05419272.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholera CIRS 101]
 gi|262156047|ref|ZP_06029167.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae INDRE
           91/1]
 gi|262167880|ref|ZP_06035580.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC27]
 gi|298498044|ref|ZP_07007851.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MAK 757]
 gi|9656453|gb|AAF95066.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546529|gb|EAX56737.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 2740-80]
 gi|121629887|gb|EAX62301.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae V52]
 gi|126509350|gb|EAZ71944.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae NCTC 8457]
 gi|126518637|gb|EAZ75860.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae B33]
 gi|146316373|gb|ABQ20912.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae O395]
 gi|227009936|gb|ACP06148.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae M66-2]
 gi|227013816|gb|ACP10026.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O395]
 gi|229343603|gb|EEO08578.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC9]
 gi|229351742|gb|EEO16683.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae B33]
 gi|229355491|gb|EEO20412.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae BX
           330286]
 gi|229370187|gb|ACQ60610.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae MJ-1236]
 gi|254844711|gb|EET23125.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MO10]
 gi|255737153|gb|EET92549.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholera CIRS 101]
 gi|262023607|gb|EEY42308.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC27]
 gi|262030225|gb|EEY48869.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae INDRE
           91/1]
 gi|297542377|gb|EFH78427.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MAK 757]
          Length = 619

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 106/515 (20%), Positives = 215/515 (41%), Gaps = 14/515 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++        K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G       
Sbjct: 120 LILEIPQFQSQ-GVFDSTAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F  LA+E+ + L   + G       PD    +   + F+L +KG  + ++   FGY I  
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           + +IK      + EV++ I  ++   +A +        LE+ +A   S D +    K +S
Sbjct: 359 LDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
             +   DF   + +  EV   P   Q L     K+D L+ +     P+   +    +   
Sbjct: 417 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           P     L+EV + V +    +K  ++     NQLV
Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509


>gi|308185912|ref|YP_003930043.1| peptidyl-prolyl cis-trans isomerase D [Pantoea vagans C9-1]
 gi|308056422|gb|ADO08594.1| peptidyl-prolyl cis-trans isomerase D [Pantoea vagans C9-1]
          Length = 622

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 114/540 (21%), Positives = 239/540 (44%), Gaps = 51/540 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL------FSVSGSSTVVSVGRQKVPFS 54
           M++ +R AS   V KI L ++ V F++ G+ + L      ++   +   +S G+ +  F+
Sbjct: 1   MMDNLRAASNHVVLKIILGLIIVSFVLTGVGNYLIGGNNDYAAKVNGQEISRGQLEQAFN 60

Query: 55  SFINSWKQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
           S  +  +Q LG     ++   GF+          + ++ L  L+  A LD +I+++ L  
Sbjct: 61  SERSRQQQMLGDQFSQLASNDGFMQQ--------MRQQALSQLIDQALLDSYIKELHLSI 112

Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
              +V   I     F   + KF +  +++ +   G +  +Y +   K LS   ++     
Sbjct: 113 SDDQVKQAIFNQQAFQ-TNGKFDNAKYLALIGNMGFSADQYAEALRKQLSNQQLINAVAN 171

Query: 171 G----MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
                   ++ L+D       + R +    L+   + A    ++  ++Q+++++K ++ A
Sbjct: 172 TDFTLKGEASKLVD----LVSQQRDIRQATLDVNALMAKQTVTDDEISQYYQQHKTSFMA 227

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           PE  R+SYIL D    ++  + S  ++QA Y+++K  Y  P+      +    + +A+  
Sbjct: 228 PEQFRVSYILMDAASMQQ--DASEADIQAWYDQHKADYSQPQRNRYSVIQTKTEADANAV 285

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
              LK G  F  +A+   KS+  IS      +G       PD  L ++   L +KG  + 
Sbjct: 286 LAQLKGGANFADVAK--AKSIDPISARKGGDMGWLEPSTTPD-ELKNA--GLTEKGQMSG 340

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
           VI  S G+++  + +I+P       EV+  +A +++     EK  + + +L++ ++   S
Sbjct: 341 VIKSSVGFLVVRLDDIQPEQVKPLDEVRSAVAAKVK----QEKGVDAFYKLQQKVSEAAS 396

Query: 401 MDE--ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTV 456
            D   ++  E+   +      +  +D     +     K Q +F   + G++     +  +
Sbjct: 397 NDNESLAGAEQASGLKAKETGWFSQDTLPDALNFDAVK-QAIFNGGLVGQNGAPGNNSDI 455

Query: 457 ALPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
              DG   +V +I E  P   + LE+V   +    K  K  ++  ++A++L+ +  K GK
Sbjct: 456 ITVDGDRAFVLRISEHKPEAVKPLEQVKAQITDTLKHDKATQQAKAQADKLLTDL-KAGK 514


>gi|229523938|ref|ZP_04413343.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae bv.
           albensis VL426]
 gi|229337519|gb|EEO02536.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae bv.
           albensis VL426]
          Length = 619

 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 107/515 (20%), Positives = 215/515 (41%), Gaps = 14/515 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G       
Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F  LA+E+ + L   + G       PD    +   + F+L +KG  + ++   FGY I  
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           + +IK        EV++ I  ++   +A +        LE+ +A   S D +    K +S
Sbjct: 359 LDDIKAPVVKPCSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
             +   DF   + +  EV   P   Q L     K+D L+ +     P+   +    +   
Sbjct: 417 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           P     L+EV + V +    +K  ++     NQLV
Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509


>gi|297579436|ref|ZP_06941364.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae RC385]
 gi|297537030|gb|EFH75863.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae RC385]
          Length = 619

 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 107/515 (20%), Positives = 214/515 (41%), Gaps = 14/515 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G       
Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F  LA+E+ + L     G       PD    +   + F+L +KG  + ++   FGY I  
Sbjct: 299 FATLAKEKSQDLGSAEEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           +  IK      + EV++ I  ++   +A +        LE+ +A   S D +    K +S
Sbjct: 359 LDEIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
             +   DF   + +  EV   P   Q L     K+D L+ +     P+   +    +   
Sbjct: 417 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           P     L+EV + V +    +K  ++     NQLV
Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509


>gi|239948494|ref|ZP_04700247.1| peptidyl-prolyl cis-trans isomerase [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922770|gb|EER22794.1| peptidyl-prolyl cis-trans isomerase [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 524

 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 80/388 (20%), Positives = 175/388 (45%), Gaps = 20/388 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++   ++   F+ +G+ D L        +     + +    F+ + 
Sbjct: 1   MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIITFSHVKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F   +F +      ++E++Y+ ++ +   +   VG F+        + D
Sbjct: 121 ESPVFKNEQGVFDIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I ++ ++ P    I  P++  L  +++  K ++  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTDQQLKDFYQDNKTSFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287
           ++  K+ K+ ++ DEL   Y +NK+++ +    +V++ +            N + A +  
Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGNQSFESVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHG 344
                G   +++AE+    + +++  S++ E I D  +   ADSIF L++     P+   
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYVSYA-ELIEDKIIAENADSIFELSEGELSYPIETE 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371
              Y+I   + +I+P+    F  +K+ +
Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQV 385


>gi|34581133|ref|ZP_00142613.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262518|gb|EAA26022.1| unknown [Rickettsia sibirica 246]
          Length = 524

 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 81/388 (20%), Positives = 173/388 (44%), Gaps = 20/388 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++   ++   F+ +G+ D L        V     + +    F+ + 
Sbjct: 1   MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+ +IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINVISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F+  +F +      ++E++Y+ ++ +   +   VG F+        ++D
Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIKSFYVPKAMID 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I ++ ++ P    I  P+   L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287
           ++  K+ K+ ++ DEL   Y +NK+++       V++ +            N + A +  
Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344
                G   +++AE+    + +++  S++ E I D      ADSIF L++     P+   
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAESADSIFELSEGELSYPIETE 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371
              Y+I   + +I+P+    F  +K+ +
Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQV 385


>gi|88860449|ref|ZP_01135087.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Pseudoalteromonas tunicata D2]
 gi|88817647|gb|EAR27464.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Pseudoalteromonas tunicata D2]
          Length = 633

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 176/412 (42%), Gaps = 25/412 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFI 57
           MLE IR+ S+   AKI L ++ + F + G+   L    G +T   V  V  QK+  ++F 
Sbjct: 1   MLEKIREGSQGLTAKIILGLVILSFALAGIGSYL----GQTTEKPVAVVNGQKISQTTFA 56

Query: 58  NSWKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +++ E   + Q+ G   N   S+      + + ++D LV      Q   ++GL      
Sbjct: 57  RAYENERSRLEQQFGEYFNQIASDPTYMARVREGVIDRLVQQELQTQLANELGLRISDEA 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--M 172
           +  EI   P F+    +FS+D ++  + +       + ++    ++R+ +V         
Sbjct: 117 IKEEIRTLPYFN-IGGQFSNDRYLQVIRQMNFQPDTFRNYLRTEMTRSQLVTAVAASDFA 175

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            P+ ++     +   + R +DY++L    V      +   ++ ++   +  + + E   +
Sbjct: 176 LPNEMVT--ISQLQTQVRDLDYVLLTADQVSKDITVTEQEISDYYTLNQSQFLSQEQVSV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADE 285
            Y+  +         +++DE+ A Y  NK +Y  PE R V  ++         ++ +A +
Sbjct: 234 EYVELNAETLPVVKAVTDDEILALYNDNKAQYVEPERRRVAHILVDLGDDEAASEAKAQD 293

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVI 342
               LK G  F QLA+     +     G    +    + D +  ++ FSLA KGD + V+
Sbjct: 294 LLAKLKAGADFAQLAQSDSSDIVSAENGGDLDWIDRDMMDPAFEEAAFSLAAKGDISDVV 353

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
              FG+ I  +++++     +   VK ++  ++     +E   E   RL E 
Sbjct: 354 KSEFGFHIIKLTDLQAEQIKTLDMVKDELTARLEQDHKTEHFYELQTRLAEL 405


>gi|157964968|ref|YP_001499792.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia massiliae MTU5]
 gi|157844744|gb|ABV85245.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia massiliae MTU5]
          Length = 525

 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 173/388 (44%), Gaps = 20/388 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++  V++   F+ +G+ D L        V     + +    F+ + 
Sbjct: 2   MLDNIRKTADSFIMRVLFVMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 61

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 62  SLEINAISKQTGTSLTDEEIAKLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 121

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F+  +F +      ++E++Y+ ++ +   +   VG FV        + D
Sbjct: 122 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFVESFYVPKAMTD 181

Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ + ++ ++ P    I  P++  L  +++  K  +  PE +  SYI  
Sbjct: 182 NIVDYMAEKREVELVQIDLQNKPKDLQIPTPTDQQLKDFYQDNKTAFEVPEKRSFSYIKA 241

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287
           ++  K+ K+ ++ DEL   Y +NK+++       V++ +            N + A +  
Sbjct: 242 NI--KDLKVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 299

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHG 344
                G   +++AE+    + ++   S++ E I D  +   ADSIF L++     P+   
Sbjct: 300 DETAAGSSLVEIAEKYKLPIQNVHYISYA-ELIEDKIIAENADSIFELSEGELSYPIETE 358

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371
              Y+I   + +I+P+    F  +K+ +
Sbjct: 359 DKSYLILVELKSIQPAKIPEFDAIKEQV 386


>gi|58584787|ref|YP_198360.1| parvulin-like peptidyl-prolyl isomerase, PPID [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58419103|gb|AAW71118.1| Parvulin-like peptidyl-prolyl isomerase, PPID [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 602

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 133/632 (21%), Positives = 271/632 (42%), Gaps = 54/632 (8%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           + +  K+  V+L    +  G+ + L   +    V  VG++ +    +   ++     IS 
Sbjct: 4   KNFFTKVTAVILTCLLIFTGVGNFLSDENKKEEVARVGKEVITLGEYKLLYQSYGKQIS- 62

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
             G  ++ E+ + +  D  +L+ L+    L   I D+GL      +   I  +  F    
Sbjct: 63  --GSDISEEQVKRLKYD--LLNALIEQKLLFNLISDLGLVVGEESIKDHIRNTKYFQNDK 118

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL-------DQA 182
            KF  + F   L    + E EY+    K+L       MF+  +   N  +       +Q 
Sbjct: 119 GKFDKEKFHEALNSLHMTEGEYVAKLEKILPAI----MFITSLFHDNYPVTFGEKIDEQI 174

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
            +   + R V+ + +    V  + +P + VL   +EK K ++  PEY+   YI       
Sbjct: 175 YKNRHQTRVVNIVKITQNAVTNVTEPDDRVLLDLYEKNKSHFYYPEYRTAQYISLGQKYF 234

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAE 301
             +I+IS+ E+    ++ + K    + R +  L+F  ++EA+ A +  ++ K  F Q+ E
Sbjct: 235 ANQIQISDREVDDIIKQQELK----DQRDIFNLIFYTKEEAETARKEFEEDKVSFEQIVE 290

Query: 302 EQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           + GK+ L +  + + +K+ +P+  + + +F+L K G+ + V+  SFG+ I  V +     
Sbjct: 291 KFGKTKLEETRINNITKDSLPE-DMREKVFAL-KVGEVSEVLASSFGWHIIKVDSAHQIS 348

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             +  ++KK+I   +   K+ EKV +   ++   +  G +++ IS    +    +  +D 
Sbjct: 349 NENLVDLKKNIKLVLTNQKSFEKVNDFINQVNYKIYNGATIEGISSEYNLPMQTIGPIDA 408

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           +GKD  G  V +      L+  +F ++    K +   + D + + V+I   +P + +  E
Sbjct: 409 SGKDQSGNSVES---SSDLVSFIFSREKD-QKGYFKGVGD-AVVSVKIVNIVPPKLQSFE 463

Query: 481 EVLTDVKKDW-------KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
           E        W       K  K  +EV+++            K   D+ K  G  L+   Q
Sbjct: 464 EGKALAIDLWRNGFIKEKMFKIGQEVAARL-----------KEKADLKKTQGIELIKDQQ 512

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV--VFKVTNSKVGPVQEKDKFI 591
           I+R +   + + +  I ++F+         P+++    +  V K   S  G +   D   
Sbjct: 513 IHRNEVGQQSYPFSFIEEIFNMKTIGSVTDPVQHNNEVIVGVLKEMYSSSGKLNTFDTGK 572

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
             +       L + +I+YL+S+Y V V+  ++
Sbjct: 573 RVMI-----SLKEQLISYLESKYKVKVNHAIL 599


>gi|149928383|ref|ZP_01916623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
           MED105]
 gi|149822918|gb|EDM82164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
           MED105]
          Length = 633

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 114/490 (23%), Positives = 210/490 (42%), Gaps = 36/490 (7%)

Query: 19  VVLFVPFLIWGLSDALFSVSGSSTVVS-------VGRQKVPFSSFINSWKQELGMISQKI 71
           ++ FV  L    + ALF + G +TV +       VG   +    F    ++ +     + 
Sbjct: 10  IMQFVLLLFIAPAFALFGLEGYNTVSADANALAIVGDYPISQEEFDQVKRERIEEARAQS 69

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G   + +   S  +++++LD LV    L Q ++   L A    +  +IAR+PLF   D K
Sbjct: 70  GENFDPKVFESPEINRQLLDTLVLQYLLQQSVQKQYLTASDKALAEDIARTPLFQ-VDGK 128

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F  + +   LA  G+   ++  +    L+R  V+   +        L  Q        R 
Sbjct: 129 FDLETYKRELAARGLTPTQHEANVRFGLARNQVLDPVLRASFFPETLKTQLDDVQLAGRV 188

Query: 192 VDYIVLNNRHVPAIADPS--NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           V   V N    P +A+ S  +  +  ++E  K  + AP+   + Y++      + KIE+S
Sbjct: 189 VR--VKNIDLAPYLANVSITDEQVAAFYETNKAQFMAPQKADVEYVVLSPDTIKSKIEVS 246

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------ADEAFQSLKKG-KKFIQ 298
           + ++ A YE+NK ++ +PE R    ++   +KE          A++    LK    KF +
Sbjct: 247 DADIAAYYEQNKARFSTPEERRARHILLDAEKEGASADDLKAAAEKVLAELKANPSKFAE 306

Query: 299 LAEE----QGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           LA++     G +     LG F K   +P+   A  +FS  KKG+ + ++   FGY I  V
Sbjct: 307 LAKQYSIDPGSANQGGDLGFFGKGAMVPEFEQA--VFS-QKKGELSGLVKSQFGYHIVEV 363

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + I+     + ++VK  IA++++  K + +  +   R  E +  G      S    + ++
Sbjct: 364 TEIRGGEVQALEDVKTQIADEIKNQKMTAQFADAQGRFTELVYEGGQ----SFENVVKAL 419

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM-WVQIKESI 472
            +    F G          +    +++  +F  D   +K++T A+  G  M   +I    
Sbjct: 420 GVQAQTFNGLTQGAANAPEVLKDAKVIAEIFSSDSIENKNNTKAVQVGETMVSARIVNYT 479

Query: 473 PARDRKLEEV 482
            A  R LEE+
Sbjct: 480 AAAARPLEEM 489


>gi|148244746|ref|YP_001219440.1| peptidyl-prolyl cis-trans isomerase D [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326573|dbj|BAF61716.1| peptidyl-prolyl cis-trans isomerase D [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 615

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 115/525 (21%), Positives = 241/525 (45%), Gaps = 47/525 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS---VGRQKVPFSSFI 57
           ML  IR  ++ W++ + + ++ +PF ++G+S+  F+ + +  V S   V   K  F S  
Sbjct: 1   MLVSIRNKTKGWISYLIIGLIIIPFALFGISE-YFTGASNIKVASFDGVDISKEEFLSEF 59

Query: 58  NSWKQEL-----GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
           N  K+ L         +K  F+          L + IL+ +++   L+Q    +  E   
Sbjct: 60  NPQKRWLQKELDKKYDKKFDFI----------LKQSILNQMLNKHLLEQLSRKLSYETTT 109

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG- 171
             +   I  + LF  ++ +FS + +   L   G   ++Y     + L RT +    +   
Sbjct: 110 SELNNIIRANDLFK-EEGRFSLEKYKKLLRLNGYTTEKYETIKLQELRRTQIKSNLLDSA 168

Query: 172 -MRPSNLLLDQAKRFYFENRSVDYIVL-NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
            + PS LL  + ++   + R   YI++  + H+  +   + +V   +++  K  + APE 
Sbjct: 169 FITPSQLL--RLQKLNDQKRKFSYIIIQTDNHIKEVKVDAQSV-KDFYDNKKSLFFAPEQ 225

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
            +I +I   ++E  KKI++S++EL   YE  +E + + E R  + ++  ++  A +    
Sbjct: 226 VKIEFIELSLNEIAKKIKVSDNELFNFYENEQENFTTEEERQAQHILLTDELTAQKVVTL 285

Query: 290 LKKGKKFIQLA----EEQGKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHG 344
           L  G  F++LA    ++ G      +LG F++   +P+      +F++ K G+ + ++  
Sbjct: 286 LDNGGDFVKLAKQYSQDSGSKDDAGNLGFFTRGIMVPE--FEKKVFAM-KSGEVSDLVKS 342

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FGY I  ++NIK     SF   K++I + + I K ++KV  +       LA  TS+++I
Sbjct: 343 KFGYHIIKLNNIKVKTLKSFDIAKQEILD-LYIQKQAQKVFYNLTEQLASLAYETSLEKI 401

Query: 405 SRREKIVSIDLPLVDFAGKDVK--GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
             +   + + L + DF  K      +++    + + +L +  G++  +     + L    
Sbjct: 402 VDQ---MDLKLQVSDFFDKRNTQLNQKIVTTAFSDMVLNK--GENSEV-----LELSKDK 451

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
            M ++++E +  R +   EV +++     T+     V + A  +V
Sbjct: 452 LMVIRVREKLVKRQKSFSEVKSEINTHLMTLLAKTFVDNLAKNIV 496


>gi|90410786|ref|ZP_01218801.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
           profundum 3TCK]
 gi|90328417|gb|EAS44715.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
           profundum 3TCK]
          Length = 623

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 106/485 (21%), Positives = 213/485 (43%), Gaps = 58/485 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M+E +R+   +   K+ L ++   F+  G+   L    GS    + +   ++  + F  +
Sbjct: 1   MMERLREGVNSIWVKVILGLIIFSFVFAGVGSYL--AGGSQPAAAKINGTEISQNEFEQA 58

Query: 60  WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
           ++ E   +  ++G      + + E  +     + +LD +++   ++Q   ++GL      
Sbjct: 59  YQNERNRMQSQLGDYFSTLLGDPEYVKQ--FRQSVLDRMINDVLIEQRATELGLRISDEH 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   I   P F  +D KF +D +   L R G    ++ ++    + RT     F+  ++ 
Sbjct: 117 IRKTITSMPEFQ-RDGKFDNDSYTMLLRRSGFTPDQFAEYMRTDMLRT----QFLTAIQG 171

Query: 175 SNLLLDQA----KRFYFENRSVDYIVLNNRHVPAIAD-PSNAVLTQ-----WFEKYKDNY 224
           S+  LD      ++   + R V  + L+      +AD   NA +T      ++E+    +
Sbjct: 172 SDFALDSELTALRKLEAQQRVVRSLTLD------LADFTKNATVTDEEAKVFYEQNPQMF 225

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             PE  +++YI       +  +++S+++++A YE++K+KY S E R V  ++     + D
Sbjct: 226 TRPEQVKVAYIELSGEGLKDTLDVSDEDVKAYYEEHKDKYSSIEQRQVSHILV----QGD 281

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY--------------IPDVSLADSIF 330
            A    K   + ++   + G   S+++L S    Y              + D +  D+ F
Sbjct: 282 NA--DAKAKAEALKAELDAGADFSELALSSSDDTYSAKDGGKLDWFERGVMDPAFEDAAF 339

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            LA  GD + V+  SFGY I  +  +K S    F +V  +I  ++R  +A+E   +   +
Sbjct: 340 GLANSGDVSGVVKSSFGYHIIKLDAVKASQVKPFADVSAEIIVELREQQAAEHFYDMQTK 399

Query: 391 LEE-FLALGTSMDEISRREKIVSIDLPLVDFAGK-DVKGKEVAAIPYKEQLLFRVFGKDD 448
           L E    +  S+D+ +     V+  +   DF  + D +G  V A P   Q LF    ++D
Sbjct: 400 LAETAFEMPDSLDDAA---AAVNATVHTTDFISQTDAQG--VLATPAVMQALFSAEVRED 454

Query: 449 PLSKD 453
            L+ D
Sbjct: 455 GLNSD 459


>gi|119945205|ref|YP_942885.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
 gi|119863809|gb|ABM03286.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
          Length = 631

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 188/408 (46%), Gaps = 21/408 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ ++   AKI +VV+ + F + G+S  L   SG S  V+V  +++  ++   ++
Sbjct: 1   MLDKMREGAQGATAKIIIVVIILSFALAGVSSYLGG-SGISVAVTVNDEEISKATVDQAY 59

Query: 61  KQELGMISQKIG--FVVNSERARSVGLDKKI----LDNLVSGATLDQFIEDIGLEADHGR 114
           + E   + Q+ G  F +    A +   ++KI    +  ++S   L Q I+D+GL     +
Sbjct: 60  QNERTRLEQQYGEQFAL---LASTPNFNQKIRQQAMQTVISERLLTQAIKDMGLRIGDEQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V  EI +   F   D  F+++ ++S L R      ++     + L+R  ++ M +G    
Sbjct: 117 VKQEIRKMKEFQV-DGNFNNEQYLSLLRRASYTPAQFSQSIKQDLARRQLLTMVLGSEFI 175

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP-SNAVLTQWFEKYKDNYRAPEYKRIS 233
             + + QA R   + R    + +      A  DP S   ++ ++E     ++  E   + 
Sbjct: 176 LPMEVQQANRLQAQKRVARVLTVKASDF-ADKDPISEQEISTYYENNSQFFQTAEQVSVD 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEAFQS--- 289
           Y++ D      ++ +S++EL+  Y+ +   Y   E R V   L+  +   A E  Q+   
Sbjct: 235 YVVLDGSLLADRVTLSSEELEKYYDMHASDYQRGEKRKVAHILLLGDNSAAKEKAQAILS 294

Query: 290 -LKKGKKFIQLAEEQGK-SLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            L++G  F QLA ++ + S S  + G     +  + D +  D+ F L K+   + ++   
Sbjct: 295 ELEEGADFAQLAAQKSEDSYSAENNGELDWFERGVMDPAFDDAAFKLTKEAPLSNIVKSQ 354

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           FGY I  + +I+ S  +   EV   + N  +  + +    E ++RL E
Sbjct: 355 FGYHIIKLVDIQESKKLPLSEVTAQVENAAKREEMNNLYYELHQRLSE 402


>gi|114777815|ref|ZP_01452746.1| peptidyl-prolyl cis-trans isomerase D [Mariprofundus ferrooxydans
           PV-1]
 gi|114551806|gb|EAU54346.1| peptidyl-prolyl cis-trans isomerase D [Mariprofundus ferrooxydans
           PV-1]
          Length = 636

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/490 (19%), Positives = 211/490 (43%), Gaps = 30/490 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE +R  ++ W+AKI L  + + F++WG+ D  F    +  + +V  + +  + F  ++
Sbjct: 1   MLESMRSHAQGWIAKIILGGIALSFVLWGVGD-YFLGGKTEPIATVNGKAIGGAEFYQAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++L      +G   +S    S+G+ +  L  L++   +    + + L A    V   + 
Sbjct: 60  ERQLNAYRSMLGKQYSSALMDSLGVKETTLQTLINRRIMLDTAQQLHLAAPASVVLATVH 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLL 179
             P F      F    + +     G +  +  ++  ++    D +    V  +  S   +
Sbjct: 120 SDPSFQSA-RGFDVQRYHALTRNMGFSSAQDYENDLRLNIMVDALHKALVDSVHVSETEI 178

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                  ++ R +  +V++          S+     W+E +K NY++P    ++ +  D 
Sbjct: 179 RDRFNHDYQQRVLAAVVVDPATQLNKVKVSDEQAKAWYEAHKQNYKSPLRINVNTVEIDP 238

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS---------- 289
            +  + +++   E++  +EK K ++  PE R  + ++    + A EA ++          
Sbjct: 239 RKLAEDVQVDESEVRKAFEKRKAEFSRPEERKAQHILIKVAENAPEAVRAAARKKIEAAQ 298

Query: 290 --LKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             +K G+ F  +A+   E G + S   LG F +  +   +   ++F++  KG  + ++  
Sbjct: 299 ARIKAGEDFSAVAKAVSEDGTASSGGELGWFKQGSMV-TAFDQAVFAM-DKGQVSDIVET 356

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FGY +  + +I+P+   S+ +VK  I   +   +A+E+  +  + L+E L +     E 
Sbjct: 357 PFGYHLIRLEDIRPAHEASYDDVKDGIRQDLVKARAAEEAYKLSQDLDEALGM-----ED 411

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPY--KEQLLFRVFGKDDPLSKDHTVALPDGS 462
           S +    S+DL  ++     V   E  A+P     ++  + F    P      V   DG 
Sbjct: 412 SLKAAATSLDLKTINSGL--VSRDEALAVPVLSDPEIAAKAFST-LPGQAVEIVETSDGR 468

Query: 463 YMWVQIKESI 472
           Y+ V++ E +
Sbjct: 469 YVAVEVTERV 478


>gi|229587184|ref|YP_002845685.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia africae ESF-5]
 gi|228022234|gb|ACP53942.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia africae ESF-5]
          Length = 524

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/388 (20%), Positives = 172/388 (44%), Gaps = 20/388 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++   ++   F+ +G+ D L        V     + +    F+ + 
Sbjct: 1   MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFVRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+ +IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINVISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVNYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F+  +F +      ++E++Y+ ++ +   +   VG F+        + D
Sbjct: 121 ESPVFKNEQGVFNIKIFKNYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I ++ ++ P    I  P+   L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287
           ++  K+ K+ ++ DEL   Y +NK+++       V++ +            N + A +  
Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344
                G   +++AE+    + +++  S++ E I D      ADSIF L++     P+   
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAESADSIFELSEGELSYPIETE 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371
              Y+I   + +I+P+    F  +K+ +
Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQV 385


>gi|152978448|ref|YP_001344077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus
           succinogenes 130Z]
 gi|150840171|gb|ABR74142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus
           succinogenes 130Z]
          Length = 624

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 182/399 (45%), Gaps = 43/399 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +  A+  WV+K  L  + V F++ G+   L S S SS  V V  +++   +F   +
Sbjct: 2   LMEKLHHAANNWVSKAILGAIAVSFVVSGMYGYLGSSSDSS-AVKVNGEEISQQNFQQQY 60

Query: 61  KQELGMISQKIG--FVVNSERAR-SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G  F   S+    + GL + +L+ L+    L Q+ +++ +     ++  
Sbjct: 61  NNEFQRLEQQLGPQFAALSDTPEFTAGLRQTVLNRLIDQELLRQYGDELNIAVSDEQIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI R+P F   D KFS++ +   L    ++     D Y + L     +      +  +  
Sbjct: 121 EIVRTPEFQ-VDGKFSNETYQLFLRNNNLSS----DTYAQYLREALRLAQLQSALTDTAF 175

Query: 178 LLDQAK----RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYRAPE 228
           LL   +    + +F++R+V        H+P  A+ +   +T+     ++   K  +  PE
Sbjct: 176 LLPANQEAFAKGFFQSRAVRLA-----HLPLAAEIAKQTVTEEEIQNYYNSNKSAFTVPE 230

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
             ++ Y+       EK +++++ E+Q  Y+ +K  + +     +  +   N+KEA +A++
Sbjct: 231 LIKVQYLDLTQAAAEKTVKVTDVEIQQYYQDHKADFTTKGQERLAHIQLANEKEALDAYE 290

Query: 289 SLKKGKKFIQLAEEQ---------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF- 338
           +L+KG  F  LA+E+         G  L  ++ G   KE+       +   ++ + G + 
Sbjct: 291 ALQKGADFATLAKEKSNDKVSAVNGGDLGWLNTGDLPKEF-------EDAATILEVGHYS 343

Query: 339 TPV-IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           TPV + G F   I  V   K S  +  ++VK+ I   +R
Sbjct: 344 TPVNVDGQFH--IIQVLERKDSALLPLEQVKERITQAIR 380


>gi|312171578|emb|CBX79836.1| putative protease maturation protein [Erwinia amylovora ATCC
           BAA-2158]
          Length = 623

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 121/536 (22%), Positives = 230/536 (42%), Gaps = 43/536 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R AS     KI L ++ + F++ G+   L   SG      V  Q++  + F  ++
Sbjct: 1   MMDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSGD-YAAKVNGQEISRAQFERAF 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E     Q +G    V+         + ++ L  L+    L Q+ +DIGL     ++  
Sbjct: 60  SSERARQQQMLGEQFSVLAGNDGYMQQMRQQALSQLIDEMLLTQYAKDIGLTISDDQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F     KF +  ++  +   G    +Y +   K L+   ++    G    ++ 
Sbjct: 120 AIFTQPAFQTA-GKFDNAKYIIIINNMGFTADQYAEALRKQLTTQQLIESVTG----TDF 174

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           +L    D       + R V  + +N   + A  + +   +  ++++++ +  + E  R+S
Sbjct: 175 VLGNEADSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSSEQFRVS 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  D    ++ +  S  ++Q+ YEK++  Y  P+      +    + EA      LKKG
Sbjct: 235 YIKMDAATMQQPV--SESDIQSWYEKHQGDYTQPQRNRYSIIQTKTEAEARSVLDVLKKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F +LA+E  KS   IS      +G    E  PD  L  +  +L +KG  + VI  S G
Sbjct: 293 GDFARLAKE--KSADPISARNGGDMGWLEPETTPD-ELKRA--ALKEKGQLSGVITSSVG 347

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EIS 405
           +++A + + +P    +  EV  DIAN+++     EK    + +L++ ++   S D   ++
Sbjct: 348 FIVARLDDTQPEKVKALSEVHDDIANKLK----QEKAVVAFYKLQQKVSDAASNDNESLA 403

Query: 406 RREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
             E+   +      + G D     +K K V    +   LL    G++     +  V   D
Sbjct: 404 SAEQAAGVKAVETGWFGHDNIPAELKFKAVQDAIFNGALL----GENAAPGSNSDVITVD 459

Query: 461 GSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           G   +V +I E  P   + L++V   +    K  K  ++  ++A++L+ E  K GK
Sbjct: 460 GDRAFVLRISEHKPEAVKALQDVTAQITDTLKQQKGLQQAKAQADKLLAEL-KAGK 514


>gi|15893195|ref|NP_360909.1| hypothetical protein RC1272 [Rickettsia conorii str. Malish 7]
 gi|15620408|gb|AAL03810.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 524

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/388 (20%), Positives = 171/388 (44%), Gaps = 20/388 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++   ++   F+ +G+ D L        V     + +    F+ + 
Sbjct: 1   MLDNIRKTTDSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F+  +F +      ++E++Y+ ++ +   +   VG F+        + D
Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I ++ ++ P    I  P+   L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287
           ++  K+ K+ ++ DEL   Y +NK+++       V++ +            N + A +  
Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344
                G   +++AE+    + +++  S++ E I D      ADSIF L++     P+   
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAESADSIFELSEGELSYPIETE 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371
              Y+I   + +I+P+    F  +K+ +
Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQV 385


>gi|238650847|ref|YP_002916702.1| peptidyl-prolyl cis-trans isomerase [Rickettsia peacockii str.
           Rustic]
 gi|238624945|gb|ACR47651.1| peptidyl-prolyl cis-trans isomerase [Rickettsia peacockii str.
           Rustic]
          Length = 524

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/388 (20%), Positives = 171/388 (44%), Gaps = 20/388 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++   ++   F+ +G+ D L        V     + +    F+ + 
Sbjct: 1   MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F+  +F +      ++E++Y+ ++ +   +   VG F+        + D
Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I ++ ++ P    I  P+   L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287
           ++  K+ K+ ++ DEL   Y +NK+++       V++ +            N + A +  
Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344
                G   +++AE+    + +++  S++ E I D      ADSIF L++     P+   
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAESADSIFELSEGELSYPIETE 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371
              Y+I   + +I+P+    F  +K+ +
Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQV 385


>gi|254448800|ref|ZP_05062257.1| peptidyl-prolyl cis-trans isomerase D, putative [gamma
           proteobacterium HTCC5015]
 gi|198261641|gb|EDY85929.1| peptidyl-prolyl cis-trans isomerase D, putative [gamma
           proteobacterium HTCC5015]
          Length = 643

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 129/580 (22%), Positives = 244/580 (42%), Gaps = 69/580 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IR+     VA + +  L +  ++  L D +  + G ++ ++V  + V     I  +
Sbjct: 1   MLLAIREKVTGAVALVIIAALGLFMVVPMLYDYVAGM-GDNSAITVDGESVS----IQQY 55

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA---------- 110
            Q L    Q++      E   S G      D L++  T DQFI+ +  E           
Sbjct: 56  NQRLSQNRQRLTQAFGGELPESFG------DQLLAKRTTDQFIQQLLQEQATLNDGYAIS 109

Query: 111 --DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
             D  RV   I  +P F   D +F  + +  +L   G +   Y    TK      V G F
Sbjct: 110 DEDLVRV---IQEAPQFQ-TDGQFDPEAYKRQLRSIGYSPALYEQTMTKRF----VQGQF 161

Query: 169 VGGMRPSNLL----LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
             G+  +  +    L+Q      + R ++YI  +     +  + S+A +  +FE +++ +
Sbjct: 162 QEGITQTAFVAPGQLEQMAALMHQERDIEYIAFSGEAFRSDIELSDAEIEAYFEDHREQF 221

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKE 282
             PE   + Y+  +  + +  +E++ +E+Q EY+   +  +Y S E R+   ++F    +
Sbjct: 222 MHPEKVSVEYVAINFEDYKNGLEVTEEEVQQEYQAGVDSGRYTSQEERSASHILFAFDSD 281

Query: 283 ADE------------AFQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIP 321
           ADE                + +G  F  LA+         EQG SL  +  G    E+  
Sbjct: 282 ADEDARAAVRSEAEQVLTQINEGGDFSALAKEHSDDPGSAEQGGSLGVVQKGVMVPEF-- 339

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                 ++F+L ++G  + ++   FGY I  +    P+    F E+   I  ++   KA 
Sbjct: 340 ----EQAVFNLPEEGAVSDLVESQFGYHIIRLDEYTPAEAQPFDEISAKIRQELLDNKAR 395

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
            +   D   +   LA  +S   +    + +S++L   D+  +   G+ +A+ P   +  F
Sbjct: 396 LRYDSDIDEMSN-LAFESS-GSLEPVAQALSLELQSSDWFTR-TSGEGIASDPVVREAAF 452

Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
           +    DD  +   T+ L +G  + +++KE  P  ++ LEE  +DV+    T   AE++S+
Sbjct: 453 KTDILDDGYNS-GTLDLSNGDVVVLRVKEHEPRHEKTLEEARSDVESALMTKTVAEQLSA 511

Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
             +Q    + + G++   I + LG    T   + R + E 
Sbjct: 512 AQSQAAEAW-RSGESGEAIAERLGGEFNTALGVTRKNPEQ 550


>gi|170717232|ref|YP_001784350.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus
           2336]
 gi|168825361|gb|ACA30732.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus
           2336]
          Length = 618

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 100/442 (22%), Positives = 200/442 (45%), Gaps = 48/442 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +  AS   V+KI   ++ V F++ G++  +F +   ++V  V  +++    F+  +
Sbjct: 2   LMEKLNNASSGIVSKIIFGLIGVSFVLSGVAGYMF-IRTDTSVAKVNGEEISQQVFLQQY 60

Query: 61  KQELGMISQKIGFVVNSERARSVG--LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
             E   +S+ +G    +E A S    L  ++LD L++   L Q+ +++ L     +V   
Sbjct: 61  NNEYQRLSENLGAKF-AEVADSAAKHLRHEVLDRLINQELLRQYAQELKLGISDKQVSLA 119

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN-- 176
           I  SP+F   + KF + ++   LA  GI+     D Y   +    V+     G+  S+  
Sbjct: 120 IVNSPMFQN-EGKFDNKIYQQILASSGISS----DTYAAYVREGLVLEQLQQGIANSDFQ 174

Query: 177 --LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
             + L++  + +F+ R V   VL+          +   + Q+++  K N+  PE  ++ Y
Sbjct: 175 VPIQLNELAKNFFQRRDVRLAVLSLDDEMQKQTVTEQEIEQYYQANKANFAVPERVKVQY 234

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           +       ++K++IS+ E+   Y+ NK +Y +  +  ++    P ++EA   + +L+ G+
Sbjct: 235 LDLTRAIADQKVKISDIEIAQYYQDNKAQYITKHLAHIQ---LPTEQEAQSVYANLQNGE 291

Query: 295 KFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            F  LA+         ++G  L  +  G     +       +S  +L   G+++  +   
Sbjct: 292 DFSALAKLYSMDTLSAQKGGDLDWVVNGMMPLAF-------ESAVTLLNVGEYSQPVKVD 344

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMR---ITKA--------SEKVKEDYKRLEEF 394
             Y I  V ++K   T    +VK++IA ++R   +T A        +EK  E+ + LEE 
Sbjct: 345 NAYHIIKVLDMK---TRELNDVKEEIATKLRNDLVTNAFYSLEKQMNEKAFENPQSLEE- 400

Query: 395 LALGTSMDEISRREKIVSIDLP 416
            A   +  EI   +     DLP
Sbjct: 401 -AAKVAGLEIKETDYFSRQDLP 421


>gi|307822662|ref|ZP_07652893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter
           tundripaludum SV96]
 gi|307736266|gb|EFO07112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter
           tundripaludum SV96]
          Length = 620

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 132/553 (23%), Positives = 247/553 (44%), Gaps = 73/553 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IR+ ++   A   L+++ VPF +WG+ + L      + V SVG +   F   +N  
Sbjct: 1   MLTKIREKAQGAFAWGILIIICVPFALWGIQNYL-DTGEEAPVASVGDKDF-FQRDVNKA 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            ++     Q  G  ++ +  ++  L+K I D +     L Q++   GL          I 
Sbjct: 59  YEQYSQNLQ--GMTIDEQTLKAQALEKLIKDEV-----LLQYVHANGLVTTDDAAREFIQ 111

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   D KF    + + L  + ++  E+++     L    ++  F   +  S+    
Sbjct: 112 SLPYFQ-VDGKFDDKRYKTMLNLQKMSSGEFVNRIKNAL----IMEQFQRSIIDSSFATK 166

Query: 181 QAKRFYF----ENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYI 235
                +F    + R VDY+ +    V  +A+ P+   +  ++++++D Y+ PE   + YI
Sbjct: 167 YDVESFFKIQNQQRDVDYVTV---AVQKLAEQPAEEEIAAYYQQHQDLYQTPEQVSVEYI 223

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------AFQS 289
              + +  K I +++D+L+A YE+ K++Y +PE R +  ++F    + DE      A ++
Sbjct: 224 ELSLEDIAKTIAVTDDKLKAFYEEQKDQYTTPERRKISHILFAINDKVDEKTALEKALKA 283

Query: 290 LKK--GKKFIQLAEE------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
            K+   K F  +A E        K+  D+ L +     + + S  D+  +L K G+ +  
Sbjct: 284 QKELANKDFAAVAAEVSDDKLTAKTGGDLGLFNAG---VMEKSFEDAASAL-KLGEVSNP 339

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +  +FGY +  V+ + P     F+ VK +      +TKA +K + +      F   G ++
Sbjct: 340 VKSAFGYHLIKVTELVPGEIKPFESVKNE------VTKAYQKAQAE----NAFYEAGETL 389

Query: 402 DEISRRE----KIVSIDLPLV----DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
            E+S       K V+  L +         KD KG  +AA    E++    F  ++ L  +
Sbjct: 390 TEMSYENPDNLKTVADALGVTIKKSALFTKD-KGDSIAA---DEKIRNAAF-TEEVLQGN 444

Query: 454 HTVALPDGSYMWVQIK--ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
           ++  +  G+   V ++  E  PA  R+    L+DVKKD   V     +S KA Q  +E S
Sbjct: 445 NSTPIELGTDRLVVLRMLEHKPAAARE----LSDVKKDIVAVL----LSDKAKQQAIETS 496

Query: 512 KEGKNFRDIGKNL 524
           K+ K     G+++
Sbjct: 497 KKIKTRLQAGESI 509


>gi|157826283|ref|YP_001494003.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia akari str.
           Hartford]
 gi|157800241|gb|ABV75495.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia akari str.
           Hartford]
          Length = 524

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 171/388 (44%), Gaps = 20/388 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++   ++   F+ +G+ D L        V     + +    F+ + 
Sbjct: 1   MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
              +  IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLAINAISKQTGTSLTDEEIAQLNIDNQILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F    F +      I+E++Y+ ++ +   +  +VG F+      N + D
Sbjct: 121 ESPVFQNEQGAFDIKNFKAYFRNSYIDEEKYLLNFKEKALKNILVGSFIESFYVPNAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I ++ ++ P    I  P++  L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTDQQLKVFYQDNKTAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287
           ++  K+ K+ ++ DEL   Y +NK+++       V++ +            N + A +  
Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGDQSFELVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344
                G   +++AE+    + +++  S++ E I D      ADSIF L++     P+   
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAESADSIFELSEGELSYPIEAE 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371
              Y+I   + +I+P+    F  +K+ +
Sbjct: 358 DKSYLILVELKSIQPTKIPEFDTIKEQV 385


>gi|254450375|ref|ZP_05063812.1| putative peptidyl-prolyl cis-trans isomerse [Octadecabacter
           antarcticus 238]
 gi|198264781|gb|EDY89051.1| putative peptidyl-prolyl cis-trans isomerse [Octadecabacter
           antarcticus 238]
          Length = 619

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/430 (20%), Positives = 186/430 (43%), Gaps = 26/430 (6%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           I L +LFV  + +G S     +SG+  ++ +VG + +    +    + ++ + S + G  
Sbjct: 18  IILGLLFVGLMGFGAS----GLSGNLQSIGAVGDKTLSAQRYYQELQTQIRLRSAQEGRT 73

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           ++   A+   +  + L  +V+  +LD     +GL      +  ++   P F G +  F  
Sbjct: 74  ISFPEAQDAQVPSRALQIVVAERSLDNEAAILGLSVGDRVISEQVLADPNFRGFEGTFDR 133

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
             +   L+R G+N +EY     +  +R  + G    G+   ++  +   +F  E R+  +
Sbjct: 134 TTYRETLSRSGMNVREYETDLREGAARALLQGAVFTGVPDPSVFGEVVAQFIREGRTFTW 193

Query: 195 IVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
             LN   V   + +PS   L   ++   + Y + E + + +        +  + +  +EL
Sbjct: 194 AALNAADVDITLPEPSEDDLQAHYDANPNLYTSLETRELRFAWIVPSMIQDDMPVDEEEL 253

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLSDISL 312
           + EY++  +++   E R +E+LVF N + A  A  ++  G   F QL  ++G SL D+  
Sbjct: 254 RLEYDERIDEFVQAERRLIERLVFANDEAAQTALDAINAGDTTFPQLVADRGLSLDDVDG 313

Query: 313 GSFSKEYIPDVSLA------DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
           G        DVSLA      +++F+ ++ G  +       G  +  ++ +  +   +F++
Sbjct: 314 G--------DVSLAQLGAAGEAVFA-SETGGVSGPFPTDLGPALFRMNAVLAAQNTTFEQ 364

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
               +       +A   +++    +   LA G S+D +  +  +V  +L        D+ 
Sbjct: 365 ALPALRETQSAARAQRLIEDQIDPITNLLAGGASLDNLVAQTDMVLGELDFTSLTTDDIA 424

Query: 427 G----KEVAA 432
                ++VAA
Sbjct: 425 AYAAFRDVAA 434


>gi|113461230|ref|YP_719299.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus somnus 129PT]
 gi|112823273|gb|ABI25362.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus somnus 129PT]
          Length = 618

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 192/412 (46%), Gaps = 32/412 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +  AS   V+KI   ++ V F++ G++  +F +   ++V  V  +++    F+  +
Sbjct: 2   LMEKLNNASSGIVSKIIFGLIGVSFVLSGVAGYMF-IRTDTSVAKVNGEEISQQVFLQQY 60

Query: 61  KQELGMISQKIGFVVNSERARSVG--LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
             E   +S+ +G    +E A S    L  ++LD L++   L Q+ +++ L     +V   
Sbjct: 61  NNEYQRLSENLGAKF-AEVADSAAKHLRHEVLDRLINQELLRQYAQELKLGISDKQVSLA 119

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN-- 176
           I  SP+F   + KF + ++   LA  GI+     D Y   +    V+     G+  S+  
Sbjct: 120 IVNSPMFQN-EGKFDNKIYQQILASSGISS----DTYAAYVREGLVLEQLQQGIANSDFQ 174

Query: 177 --LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
             + L++  + +F+ R V   VL+          +   + Q+++  K N+  PE  ++ Y
Sbjct: 175 VPIQLNELAKNFFQRRDVRLAVLSLDDEMQKQTVTEQEIEQYYQANKANFAVPERVKVQY 234

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           +       ++K++IS+ E+   Y+ NK +Y +  +  ++    P ++EA   + +L+ G+
Sbjct: 235 LDLTRAIADQKVKISDIEIAQYYQDNKAQYITKHLAHIQ---LPTEQEAQSVYANLQNGE 291

Query: 295 KFIQLAEEQG-KSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAH 352
            F  LA+     +LS    G         + LA +S  +L   G+++  +     Y I  
Sbjct: 292 DFAALAKLYSMDTLSAPKGGDLDWVVNGMMPLAFESAVTLLNVGEYSQPVKVDNAYHIIK 351

Query: 353 VSNIKPSFTVSFQEVKKDIANQMR---ITKA--------SEKVKEDYKRLEE 393
           V ++K   T    +V+++IA ++R   +T A        +EK  E+ + LEE
Sbjct: 352 VLDMK---TRELNDVREEIATKLRNDLVTNAFYSLEKQMNEKAFENPQSLEE 400


>gi|51244848|ref|YP_064732.1| peptidyl-prolyl cis-trans isomerase D [Desulfotalea psychrophila
           LSv54]
 gi|50875885|emb|CAG35725.1| related to peptidyl-prolyl cis-trans isomerase D [Desulfotalea
           psychrophila LSv54]
          Length = 634

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 185/392 (47%), Gaps = 29/392 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+I R  +++   +I +VV+ + F+ WG+   + + S ++ VV+   +++    F  ++
Sbjct: 5   MLQIFRNKAQSIFIQIIVVVIALVFIFWGVGANMMNKSEAAIVVN--GEEISLQQFQQAY 62

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            Q    +S + G  V    A ++GL  ++++ LV    L Q  + +G++     +   I 
Sbjct: 63  DQAFQQLSDQFGGKVPKGMADALGLKDQVVNRLVQQELLRQGGKQMGVQLSAVEIQHAIQ 122

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEY---IDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P FH KD  F    + S LA   ++  ++   I H   ML+      +       S+ 
Sbjct: 123 AMPQFH-KDGAFDVKSYNSILAANRLSPSKFEANIRH--DMLAEKTARAINEFSAHASDF 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-RAPEYKRISYIL 236
            +++      E  SVD+   + +   +        L QWF++ KDNY ++PE K ++Y+ 
Sbjct: 180 EIEEFYGQANEGVSVDFASFSPKDFSSQVSVEEPALAQWFKEAKDNYKKSPEVK-LTYLA 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAF 287
           +D    ++KI +    +   Y+ +   +   E R    ++F           Q +  +A 
Sbjct: 239 YDYATIQEKISLDEAAINNYYQSHLNTFRLAEKRHARHILFVVSPGDSDEKQQAQLKKAE 298

Query: 288 QSLKKGKK---FIQLAEE--QGKSLSDIS-LGSFSK-EYIPDVSLADSIFSLAKKGDFTP 340
             LKK +    F QLA +  +G S S+   LG F++ E IP    AD++F+L K GD + 
Sbjct: 299 NVLKKAQADEDFAQLARQFSEGPSKSEGGDLGFFARAEMIP--PFADAVFTL-KNGDISG 355

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           ++  +FGY I  +  I+ + T S  +V++ IA
Sbjct: 356 IVKTNFGYHIIKLEGIQEAKTKSLDKVREQIA 387


>gi|77165248|ref|YP_343773.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|254434944|ref|ZP_05048452.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27]
 gi|76883562|gb|ABA58243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|207091277|gb|EDZ68548.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27]
          Length = 640

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/412 (19%), Positives = 178/412 (43%), Gaps = 26/412 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  ++   A + + ++ +PF +WG+++ +    G +   SV  +++    F +++
Sbjct: 1   MLEAIRNRAQGIFAWVIVGLIAIPFTLWGINNYMLD-GGEALAASVNGEEISTREFRSAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED----IGLEADHGRVW 116
                  +Q++ F++ +     +  D     N++ G    + + D    +GL      + 
Sbjct: 60  LS----YTQQLRFLMGASFPEEMLDDPATKQNVIEGLVEQRLVLDTAAKLGLGMSDSSLS 115

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +  F G+  +F    + + L  +G+    Y       L    +V         + 
Sbjct: 116 QVIRSNKAFQGESGQFDSQRYEAVLGSQGLTPVAYEARLRSALLSEQLVSTLRLSAFTTQ 175

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             ++   R   + R + Y ++ +     + + S   + Q+++ + + +R PE  ++ Y+ 
Sbjct: 176 QEVEAIARLQQQKREIGYSIVPSATFRDVIEVSADKVRQYYDDHPEEFRIPEQVKVHYLR 235

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---------- 286
                    I +    L+  YE+++++Y  PE R    ++     + DEA          
Sbjct: 236 LTADSLATDIPLDEQTLRDFYEESEDQYRVPERRRASHILITVPPQGDEATRQQAQEKAE 295

Query: 287 --FQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
             F+ L++G+ F ++A+E     G +     LG F +  + D +  +++FSL + G  + 
Sbjct: 296 AVFERLQQGEDFEEVAKEVSDDPGSAQKGGDLGFFGRGVM-DPAFEEAVFSLEETGALSE 354

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +   FGY I  +++I+      F+ V +++A + R   A E+  E  + L+
Sbjct: 355 PVLSKFGYHIIKLTDIEAGEVKPFEAVSEELAQRYRRQIAEEQFYEQAEILD 406


>gi|85374123|ref|YP_458185.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594]
 gi|84787206|gb|ABC63388.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594]
          Length = 647

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 110/486 (22%), Positives = 194/486 (39%), Gaps = 22/486 (4%)

Query: 17  FLVVLFVPFLIWGLSDA--LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           FL ++ + F    +S       VSG   V  VG QKV  +    +    L  + Q    +
Sbjct: 21  FLALIAIAFAGADVSSTGTFGGVSGGDRVAVVGEQKVGTAELSRAASNALDQLRQNDPTL 80

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
                    GL++ +++ L+    + +F    G+ A    V  EI R P+F G D  F  
Sbjct: 81  SMPAFIDQGGLER-VVETLLDRIAIAEFGRKYGMRAGDNLVNSEIRRIPVFRGADGNFDE 139

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSV 192
           + + + +AR+G+ +    D     L    V+  G F G   P  L    A  F    R  
Sbjct: 140 ETYRAAIARQGLTDAVVRDDLGDGLIAQQVLVPGSF-GATIPDKLASRYAALFKERRRGA 198

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
             ++ +    P   +P++A +  ++   K +Y  PE + I Y  F           +  E
Sbjct: 199 IALIPSTSFAPD-GEPTDAQVQAYYNANKGDYIRPERRVIRYATFGESAVADVGTPTAAE 257

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           +   YE++  +Y + E RT+ QL+ P Q+ A      +  G     +A E G  L    +
Sbjct: 258 IANRYEQDASRYAASEERTLTQLIVPTQQAAQTFRDRVAGGASLETVAREAG--LEAQQI 315

Query: 313 GSFSK-EY--IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
           G   + EY       +A ++F  A +G   PV     G+ +  V ++      S  + ++
Sbjct: 316 GPIDRSEYGAQASAQVAQAVFGTA-RGQVAPVARSGLGWHVVRVDDVNRIEGRSLAQARE 374

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI-VSIDLPLVDFAGKDVKGK 428
           +I + +   +      E  + +E+  A G S+ +++      V    PL   AG  V G 
Sbjct: 375 EIVSTLTQERRRRAFNELAESIEDRFADGESLADVAAEVGAEVQTTRPLTG-AGI-VYGT 432

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
           +    P   ++L R       + +     T A+P  ++M  +  +  P+    L E+   
Sbjct: 433 QNEQAP---EILRRALATAFQMEEGEPQLTEAVPGETFMLFEASDITPSAPAPLAEIRDT 489

Query: 486 VKKDWK 491
           V  DWK
Sbjct: 490 VVADWK 495


>gi|330446589|ref|ZP_08310241.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490780|dbj|GAA04738.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 630

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 190/421 (45%), Gaps = 45/421 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M+E +R+ + +   KI L ++ + F+  G+   L   SG+  V + V  +++    F  +
Sbjct: 1   MMERLREGANSIWVKIILSLIILSFVFAGVGSYL--ASGNEQVAAKVNDKEISQREFEQA 58

Query: 60  WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
           ++ +   + Q++G      + N E  +     K +LD +V+   ++Q   ++GL     +
Sbjct: 59  YQNQRNQMQQRLGDYFSTLMGNPEYVQQ--FRKSVLDRMVNDELIEQRATELGLGVSDAQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V   I   P F   D  F+++ +   L R GI+ +++ +   K + R      F+  ++ 
Sbjct: 117 VKQAIIEMPAFQ-VDGVFNNEQYNLTLRRAGISPEQFAESIRKDMLRQ----QFLSALQS 171

Query: 175 SNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ------WFEKYKDNY 224
           S+  L    D+ ++   + R V  + LN      +AD +N V         ++++ K+ +
Sbjct: 172 SDFALNNEVDELRKLESQERVVRTLKLN------LADFTNKVTVTDEEAKAYYDENKNQF 225

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             P   ++SYI          I+I++ E +  Y ++K KY + E R V  ++     +A 
Sbjct: 226 TRPAQVKVSYIELSGKNLVNNIKITDQEAETYYNEHKSKYSTAEKRQVSHILVKGDSDAS 285

Query: 285 EA-----FQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKK 335
           +A        LK G  F  +A++          G     F K  + D +  ++ FSLAK 
Sbjct: 286 KAKAEALLAELKGGANFADVAKKSSDDTFSAKDGGKLDWFGKGVM-DPAFEEAAFSLAKP 344

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           GD + ++  SFGY I  +  I+      F EVK  I  +++     ++V E + +L+  L
Sbjct: 345 GDMSGLVKSSFGYHIILLDGIEEPKVKPFAEVKASIIAELQ----EQQVAEQFYKLQSKL 400

Query: 396 A 396
           A
Sbjct: 401 A 401


>gi|224368972|ref|YP_002603136.1| PpiD1 [Desulfobacterium autotrophicum HRM2]
 gi|223691689|gb|ACN14972.1| PpiD1 [Desulfobacterium autotrophicum HRM2]
          Length = 630

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 181/389 (46%), Gaps = 27/389 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+++R+ + +W+ KI L ++ + F+  G+          + V  +  Q +  + +  S+
Sbjct: 1   MLKLMRENTGSWIIKILLGLIVLVFVFLGMGS--IGAKRGNEVAMINDQPITLNEYQRSY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +  +  + Q+ G  +N E  + + + K+ LD L+    +    + + +E  +  +   + 
Sbjct: 59  QNIIEQMRQRFGDNLNDEILQMLQVKKQALDRLIDERLISGEADRLKVEVSNQELANSLL 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  K+  F    +   L+R  ++ + +     + L    V  +    +  S+    
Sbjct: 119 DIPAFR-KNGVFDLATYKVVLSRNRMSPESFEAMQLQALREQKVRDLVFSTLSVSD---Q 174

Query: 181 QAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +A+ +Y  +++   +DY+V N      IA  + A LT ++E  K+ Y++     + Y+ F
Sbjct: 175 EARAWYTHSKTQVGIDYLVFNPVAYKDIAVDAKA-LTDFYESNKEKYKSEAELTVKYLEF 233

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK----- 292
            V + + ++ IS+DE++A Y++N ++Y  PE      ++    ++ADEA     +     
Sbjct: 234 AVKDYQDRVTISDDEIKAYYDENLDQYKVPEKVEARHILIRVPQDADEATVEAARNEAET 293

Query: 293 -------GKKFIQLAE--EQGKSLSDIS-LGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
                  G+ F  LA+   QG +  D   LG+F+++ +     A++ FSLA  G+ +  +
Sbjct: 294 IHAKAVGGEDFSLLAKTFSQGPTKDDGGYLGTFARDAMVK-PFAEAAFSLA-SGEISKPV 351

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
              FG+ +  V    P+ T +  +V  +I
Sbjct: 352 RTQFGWHVIKVEAKLPASTTALDKVAAEI 380


>gi|54309794|ref|YP_130814.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
           profundum SS9]
 gi|46914232|emb|CAG21012.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
           profundum SS9]
          Length = 623

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 97/478 (20%), Positives = 209/478 (43%), Gaps = 44/478 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M+E +R+   +   K+ L ++   F+  G+   L    GS    + +   ++  + F  +
Sbjct: 1   MMERLREGVNSIWVKVILGLIIFSFVFAGVGSYL--AGGSQPAAAKINGTEISQNDFEQA 58

Query: 60  WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
           ++ E   +  ++G      + + E  +     + +LD +++   ++Q   ++GL      
Sbjct: 59  YQNERNRMQSQLGDYFSTLLGDPEYVKQ--FRQSVLDRMINDVLIEQRATELGLRISDEH 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   I   P F  +D +F +D +   L R G    ++ ++    + RT     F+  ++ 
Sbjct: 117 IRKTITSMPEFQ-RDGQFDNDSYTMLLRRSGFTPDQFAEYMRTDMLRT----QFLTAIQG 171

Query: 175 SNLLLDQA----KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
           S+  LD      ++   + R V  + L+       A  ++     ++E+    +  P+  
Sbjct: 172 SDFTLDSELTALRKLEAQQRVVRSLTLDLADFTKNATVTDEEAKAFYEQNPQMFTRPDQV 231

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           +++YI       +  +++S+++++A YE++K+KY S E R V  ++     + D A    
Sbjct: 232 KVAYIELSGEGLKDTLDVSDEDVKAYYEEHKDKYSSIEQRQVSHILV----QGDNA--DA 285

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEY--------------IPDVSLADSIFSLAKKG 336
           K   + ++   + G   ++++L S    Y              + D +  D+ F LA  G
Sbjct: 286 KAKAEALKAELDAGADFAELALSSSDDTYSGKDGGKLDWFERGVMDPAFEDAAFGLANNG 345

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-L 395
           D + V+  SFGY I  +  +K S    F +V  +I  ++R  +A+E   +   +L E   
Sbjct: 346 DISGVVKSSFGYHIIKLDAVKASQVKPFADVSAEIIVELREQQAAEHFYDMQTKLAETAF 405

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
            +  S+D+ +    +V+  +   DF  + +  + V A P   Q LF    ++D L+ D
Sbjct: 406 EMPDSLDDAA---AVVNATVHTTDFISQ-IDAQGVLANPAVMQALFSAEVREDGLNSD 459


>gi|255067897|ref|ZP_05319752.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria sicca ATCC
           29256]
 gi|255047885|gb|EET43349.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria sicca ATCC
           29256]
          Length = 616

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 187/422 (44%), Gaps = 43/422 (10%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK-QELGMISQKIG 72
           A+I L ++ + F+ +G+S    +V GS  +V +G +K+   S  N  + ++L   S   G
Sbjct: 12  AQILLGLIALTFVGFGVS--TVAVPGSDFIVKIGDEKISEYSLNNELQGEQLQGQSPSRG 69

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            V  S               LV  A L +  + +G+E    ++   I   P FH ++ KF
Sbjct: 70  AVFQS---------------LVQRAYLKEGAKLMGVEVSQEQLKQLIVDDPNFHDQNGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           S  +F + L++  + E +++    +  +   ++ +   G   S+   +Q  +     R +
Sbjct: 115 SQQIFSNFLSQRHMTEDQFVADIRERYALQSLINLVQNGAIISDAQAEQLIKLTQATRDI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
             +  N     +     +A L  ++E +K +Y  P+  ++ YI     +   K  +S DE
Sbjct: 175 RSVTFNPEAFVSQVKVDDAALKAYYEAHKKDYLIPQGVKLEYIALSAKDLADKQAVSEDE 234

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-------------FIQL 299
           ++  +++ +  + SP  R +  + FP  ++ADE  ++  K +              F  L
Sbjct: 235 VKKAFDE-QAPHLSPR-REIAHIFFPVPQDADETVRAAIKAEADKVAAELKAKPADFADL 292

Query: 300 AEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A++  K  +  S    LG  SK+      L +  FSL  KG  + V+    GY I  V N
Sbjct: 293 AKKYSKDTASASKGGNLGYLSKDGGLGTDLENVAFSLP-KGGISDVVQTPVGYDIVQVLN 351

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRRE--KIVS 412
           I+    VS +  K  I   +++ KA+ +     ++L EE     TS+ +++++   K+ S
Sbjct: 352 IEDK--VSLEHEKARIEADLKLKKAASEFNSVKEKLSEEAFNTPTSLADVAKKTNLKLES 409

Query: 413 ID 414
           +D
Sbjct: 410 LD 411


>gi|158520285|ref|YP_001528155.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus
           oleovorans Hxd3]
 gi|158509111|gb|ABW66078.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus
           oleovorans Hxd3]
          Length = 631

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 132/664 (19%), Positives = 275/664 (41%), Gaps = 73/664 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ + + + K  L ++ + F+  G+ +  F      T  +V  + V    F  ++
Sbjct: 1   MLQFMRQKASSIIIKGVLSLVILAFIFLGIGN--FREQQEVTAATVNEEIVTGREFQYTY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ L    Q+ G  +N +  + + L ++ ++ L+S   + Q  + +GL      +   I+
Sbjct: 59  QRLLDTYRQQFGGALNDDLLKMLNLKEQAMNQLISEKIILQQADKLGLNVSDSELAATIS 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP----SN 176
             P F   + +F    + +RL +         +   K        G+ V  +R     S 
Sbjct: 119 SIPAFQN-NGRFDKTRY-NRLLQSNRMTAAAFEQSQKQ-------GLLVDKLRTLITDSV 169

Query: 177 LLLDQAKRFYF--ENRSVDYIV-LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           L+ D   R +F  EN  V     +         DP+ A +  ++E++KD Y+ PE ++I+
Sbjct: 170 LVSDNEARQWFDWENARVKITAAVFAAEGRTDVDPAEAAVAAYYEEHKDQYKTPEKRKIT 229

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--QSLK 291
           Y+         +++++ +E+   Y+ N++ Y++ E      ++   +++ADEA   ++ +
Sbjct: 230 YVRVAPARYLSEVKVTEEEIADFYQANQDFYWNEETVEARHILISLEQDADEARVEEARQ 289

Query: 292 KGKKFIQLAEEQGKSLSDIS--------------LGSFSKEYIPDVSLADSIFSLAKKGD 337
           K      +  + GK  ++ +              LG+F++E +     ++  FS+A  G+
Sbjct: 290 KAADIYVMVTDGGKDFAETARQYSEGPSAGEGGYLGAFTREDMV-APFSEKAFSMA-PGE 347

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
            +  +   FG+ I  V  +  +FT    EV+ DI  Q+   KA E     Y   E     
Sbjct: 348 ISEPVRSQFGWHIIKVEKVNAAFTTPLDEVRADIEKQLLDQKAGE-----YAYEEALTLF 402

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
             ++D  S  +   S +L  V       +   +A +     ++ + F   D + K+ +  
Sbjct: 403 DMALDTDSVEQAAASRNLTAVT-TDAITQNDTLADVEAGRTMVRQAF---DFVEKEISDV 458

Query: 458 LPDG-SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
           + +G ++   Q+ E +PA    LE V   V +D +     E   ++A + VLE  K G+ 
Sbjct: 459 ITEGNTHFLFQVTEVMPAAVPPLENVQARVIEDLREQMRKEAAQAEA-ESVLEKVKAGQP 517

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDG-ISQVFSGPV------EMVKCFP----- 564
                    A ++ T           FFG  G +  + + P       ++ K  P     
Sbjct: 518 LEAACAGTQAEIVATG----------FFGRTGAVPDIGNEPALSRAAFDLTKNQPVAPNV 567

Query: 565 IENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           +E    Y V  + + K     E    +D  +  LT     ++  S +  ++ +  +T+ +
Sbjct: 568 VEGRTGYYVVVLNDQKAPEASEFEEKRDAVVKRLTAQKKNEVFMSWLKTMRQESDITIDE 627

Query: 621 NLIQ 624
             ++
Sbjct: 628 AFLR 631


>gi|312796419|ref|YP_004029341.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI
           454]
 gi|312168194|emb|CBW75197.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia
           rhizoxinica HKI 454]
          Length = 638

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 175/404 (43%), Gaps = 27/404 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +    LV+L  P L + G+         S+ V SV  +K+  + +  +
Sbjct: 1   MLDFFRNHKRLMM--FLLVILIAPGLGFVGVQGFRNFFDDSADVASVAGRKITRAEYEGA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA-DHGRVWGE 118
            +++L    Q +G   +++   +  + + ILD+LV    L +  ED+ L A D   +  E
Sbjct: 59  MREQLDRARQVLGANFDAKAIDTPEMRRAILDSLVQQRVLAKATEDLHLSASDQAVLRAE 118

Query: 119 --IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK--MLSRTDVVGMFVGGMRP 174
             I         D  +  D +   LA +G+   E  D   +  + SR    G+      P
Sbjct: 119 QSIPAIAALRKPDGTYDVDQYKQLLAMQGMT-PELFDERVRYQLASRQLPDGIQASAFAP 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            +L   Q      ++R V  ++L          PS+  L Q+++ + D +  PE   + Y
Sbjct: 178 KSLA-QQLASLSEQSREVQGLMLRATDYADKVQPSDVQLKQYYDAHHDAFAMPERASVEY 236

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVF----PNQKEADEAFQS 289
           ++       ++ + S  EL+  Y+ +  K+ +P E+R    L+      +Q E D+A Q 
Sbjct: 237 LMLSADALAQRAQPSEAELKKYYDDHAAKFKTPGEVRASHILIAVAASASQAERDKARQK 296

Query: 290 LKK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDF 338
            +          ++F +LA++        + G     + P +     +D+ F L KK   
Sbjct: 297 AESILAQVTAHPEQFAKLAQQNSDDPGSKNKGGDLGFFGPGMMVKPFSDAAFKL-KKDQI 355

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           + ++   FGY I  V++IKP  T  F EVK  IA +++  +A++
Sbjct: 356 SSIVQSDFGYHIIKVTDIKPEQTKPFDEVKATIATELKAEQATK 399


>gi|67459692|ref|YP_247316.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia felis
           URRWXCal2]
 gi|67005225|gb|AAY62151.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia felis
           URRWXCal2]
          Length = 524

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 172/388 (44%), Gaps = 20/388 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++   ++   F+ +G  D L        V     + +    F+ + 
Sbjct: 1   MLDNIRKTADSFIMRVLFAMIAFAFVGFGFKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVGYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F   +F +      ++E++Y+ ++ +   +   VG FV        + D
Sbjct: 121 ESPVFKNEQGIFDIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGSFVESFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ + ++ ++ P    I+ P++  L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELVQIDLQNKPKDLQISTPTDQQLKVFYQDNKTVFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV----------FPNQKEADEAF 287
           ++  K+ K+ I+ DEL   Y +NK+++       V++ +            N + A +  
Sbjct: 241 NI--KDLKVSITQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA---DSIFSLAKKGDFTPVIHG 344
                G   +++AE+    + +++  S++ E I D  +A   DSIF L++     P+   
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAENVDSIFELSEGELSYPIEAE 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371
              Y+I   + +I+P+    F  +K+ +
Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQV 385


>gi|297569902|ref|YP_003691246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925817|gb|ADH86627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 630

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 180/407 (44%), Gaps = 34/407 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML ++R+ +R+ + +  +V++ + F++W     +       TV +V  Q +    F   +
Sbjct: 1   MLSLLRRKARSPLIQAAVVIIILVFILW--VPQMGGNGDPGTVATVNDQPISTREFQRRY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
              LG    +    + SE   ++GL +++L  +V    L Q     GL      +   + 
Sbjct: 59  NDLLGQYRDQFEGAIPSELIEALGLREQVLSQMVQETLLLQSARKTGLPVSSEELQQAVQ 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F  ++ +FS  ++   LA   ++  E+       L R  ++   +G  + S+   +
Sbjct: 119 SMGEF-TENGQFSLQLYRQILAASRLSVHEFEAGLRTDLLRRKILEHLMGFAQVSDQ--E 175

Query: 181 QAKRFYFENRSV--DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
             +RF+ ++  V   Y+ L      A  DP++  +  +F +    YR P   RI Y+LF 
Sbjct: 176 VRERFHRDHDQVRLSYLYLRADDFRAAQDPTSEEIEAYFAEKDHRYRTPPQVRIDYLLFP 235

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----------PNQKEADEAF 287
             + E  IE   ++L A YE+N++++ +PE R    ++              Q++  E  
Sbjct: 236 ADDTEMTIE--EEDLVAYYEQNRDRFDTPEQRRARHILIRSRSDAPEETRARQRQQAETV 293

Query: 288 QSL-KKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           Q L ++G+ F QLA    E   +     LG F +  + +  L +++F++ + G+ + ++ 
Sbjct: 294 QELAREGQDFRQLALLYSEDRSAEDGGDLGFFRRGEMLE-PLEEAVFAM-EPGEISDIVE 351

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDI--------ANQMRITKASE 382
            S G+ +  +  I+   T++  E + +I          QM   +A+E
Sbjct: 352 TSLGFHVIKLEEIQEPQTITLAEAEAEIRREILRSRGRQMAFNRANE 398


>gi|222824176|ref|YP_002575750.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter lari RM2100]
 gi|222539398|gb|ACM64499.1| conserved hypothetical protein, putative peptidyl-prolyl cis-trans
           isomerase D [Campylobacter lari RM2100]
          Length = 492

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 181/390 (46%), Gaps = 47/390 (12%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++ V+ FV   F+ WG  D  F+   S++V  VG +K+ +  F 
Sbjct: 1   MLTWMQHHKKYLVVTIWISVIAFVGAGFVGWGSYD--FNTDRSNSVAKVGDEKISYDEFN 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + Q  G  SQ        E+A+  GLD + ++ L+    L  + + +GL      +  
Sbjct: 59  LKYSQLFGYYSQLNNGNYTQEQAQKDGLDTQAINELIQEKLLLSYAKTLGLNVSEEEIAY 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY--IDHYTKMLSRTDVVGMFVGGMRPS 175
           ++A   +FH     F  +++ + LAR     K Y  I H   +L + + +      ++P+
Sbjct: 119 DLAHQKIFHNASGVFDKNLYYNLLARNNYTPKTYEKIIHDELLLKKINAILNL--QIKPN 176

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE-YKRISY 234
            L +  A     ++  V  I L+N+++          L Q +EK K+ Y+    Y+  +Y
Sbjct: 177 ELDMFGASFLMQDSLKVQAIKLDNKNITM----DEKELKQTWEKNKELYKTQRSYELATY 232

Query: 235 ILF-DVHEKEKKIEISNDELQAEYEKNKEKY--FSPEIRTVEQ---------LVFPNQKE 282
            L  D+      I+I + E+QA YE+NK  Y  F+ +I ++EQ          +   + +
Sbjct: 233 FLNPDI------IKIDDKEIQAYYEENKNDYKDFAGKILSLEQSKDKVIKDLKLSKLKLK 286

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
           A+E++ +L+K     +L  ++  ++SD  +      Y P  ++       AK+ DF    
Sbjct: 287 ANESYVALRKN----ELNFDKNITISDADV------YYPLENIQK-----AKENDFIKPF 331

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
               GY+IA V  I P  T++F++ K +++
Sbjct: 332 KFENGYMIAKVIKINPIQTMTFEQAKNEVS 361


>gi|157829104|ref|YP_001495346.1| hypothetical protein A1G_06985 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933829|ref|YP_001650618.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str.
           Iowa]
 gi|157801585|gb|ABV76838.1| hypothetical protein A1G_06985 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908916|gb|ABY73212.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str.
           Iowa]
          Length = 524

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/388 (20%), Positives = 170/388 (43%), Gaps = 20/388 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IRK + +++ ++   ++   F+ +G+ D L        V     + +    F+ + 
Sbjct: 1   MLNNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F+  +F +      ++E++Y+ ++ +   +   VG F+        + D
Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I ++ ++ P    I  P+   L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287
           ++  K+ K+ ++ DEL   Y +NK+++       V++ +            N + A +  
Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344
                G   +++AE+    + +++  S++ E I D      AD+IF L++     P+   
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAESADNIFELSEGELSYPIETE 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371
              Y+I   + +I+P+    F  +K+ +
Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQV 385


>gi|332290245|ref|YP_004421097.1| peptidyl-prolyl cis-trans isomerase [Gallibacterium anatis UMN179]
 gi|330433141|gb|AEC18200.1| peptidyl-prolyl cis-trans isomerase [Gallibacterium anatis UMN179]
          Length = 621

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 145/309 (46%), Gaps = 13/309 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS--TVVSVGRQKVPFSSFIN 58
           M+E +R  + + V K+ + V+ + F++ G++  L S   +S  TV  V   +  F     
Sbjct: 1   MMEKLRGYTHSMVWKVLMSVIAISFVLSGVAGYLISRQNTSAATVNGVEISQRLFQQQYQ 60

Query: 59  SWKQELGM-ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           S  Q+L M +  K   V +S    + GL   +LD L+    L Q+ +++GL      +  
Sbjct: 61  SQYQQLAMQMGDKFAAVADSAEFTN-GLRHSVLDRLIDDELLRQYSKELGLGVGDEAIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F  KD +F + V+   LA   +      D Y +++ +  V+   +G +  S+ 
Sbjct: 120 AIVMNPAFQ-KDGQFDNAVYQQLLANNNLTP----DQYAEIVRQDLVLSQLMGSLLASDF 174

Query: 178 LLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           L +    Q  + +F+ RSV         + A    S+  + +++  +K  +  PE  ++ 
Sbjct: 175 LTEAQQQQFVKLFFQKRSVRLATFPVADLAAKQTISDQEIEKYYNDHKAAFATPELVKVQ 234

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI  +  +  K +++S+ E+   Y+ NK ++     + +  +    Q EAD+ +  L++G
Sbjct: 235 YIDVNKDKLAKDLQVSDVEVAQYYQDNKSQFMGQAKQHIAHIQVNTQAEADDIYNKLQQG 294

Query: 294 KKFIQLAEE 302
             F +LA++
Sbjct: 295 ADFAELAKK 303


>gi|254499150|ref|ZP_05111837.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254351629|gb|EET10477.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 624

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 111/513 (21%), Positives = 219/513 (42%), Gaps = 45/513 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+     S   +++ V+V  + +   +F  ++
Sbjct: 1   MLQKLNERIQGVVAWLVVILIGITFTLFGVDYYFQSHQTTNSKVTVNGEPLTEQAFEINY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++  GM  Q I  +   +  +   L  ++LD +V+   + Q     G      +    I 
Sbjct: 61  RRARGM--QDIAQMTAEDEKK---LQNQVLDQMVTNEVMVQAAHTNGFNVSLNQANAAIL 115

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  +D  FS + +   L+     +  + +   + +        F+G    S  L D
Sbjct: 116 NIPQFQ-EDGHFSSEKYQQALSAALFTQLSFQNEVKQGMLLNQQRFAFIGS---SFALPD 171

Query: 181 QAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           + +RF   Y +NR  DY+ ++       A  S   +  ++++++  + APE   + Y+L 
Sbjct: 172 EIERFVKLYMQNRDYDYVTISAARFEKDAHVSPEAIADYYKQHQKEFMAPEQVSLDYVLL 231

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADE 285
            ++  +K I+IS+D+++  Y +N+  Y +P    V  ++F              QK+AD+
Sbjct: 232 SMNNIKKHIKISDDDIKRFYNENQNNYLTPAQWQVAHILFATPEDVSKDELDQIQKKADD 291

Query: 286 AFQSLKKG-KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA----DSIFS-LAKKGDFT 339
           A+ +L+K   +F +L      +LSD  L    K  +P ++      D I S L K G+ +
Sbjct: 292 AYAALQKDPAQFEKLV----TTLSDDKLSVAEKGALPWITAGQNDYDKILSNLTKPGEIS 347

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALG 398
                  GY I  +   KP    S  EV+  I  Q+    A  +     ++L +      
Sbjct: 348 APEKTKHGYEIFKLIAYKPVTMKSLAEVETTIKEQLLAEMAQTQYAHALEQLSDLSYQSP 407

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL---SKDHT 455
            S++ +S   K+     P+   AG    G +      K QL+       D L   +    
Sbjct: 408 DSLNPVSDAMKLKIEKTPVFSRAG----GNDAIT---KNQLVINAAFSHDVLELGNNSEP 460

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
           V L + S + V++ E    +++ LE V   + K
Sbjct: 461 VQLDNDSVVVVRVNEHRAEKEQSLEAVQAQINK 493


>gi|285808228|gb|ADC35762.1| peptidyl-prolyl [uncultured bacterium 293]
          Length = 640

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 138/654 (21%), Positives = 263/654 (40%), Gaps = 64/654 (9%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLS-DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
           R W+  + L V+    L++  +  A         V  VG++K+    F  ++ ++   + 
Sbjct: 10  REWLKYMLLAVVLAFILLYIPAFQAGPGGGPGEEVARVGQEKITAGEFDRAFSRQRDALR 69

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
           ++    V+      +G+ +++L+ L+ G  + Q    +GL  D   V  +I R   +  +
Sbjct: 70  EQ---GVDPAMLEQLGVREEVLNGLIDGKLIVQEARRLGLAVDDEAVAAQIHRE--YQSR 124

Query: 129 DNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
             +F   D    RLA +GI+E E  +   + L    +  +   G+  S+   ++  R   
Sbjct: 125 GGEFVGTDEIRRRLALQGISEDEKAEQVREQLLVQRLYALVTDGVHVSDQDAEKEFRRSS 184

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
           E   V+Y+ ++       A  ++  +   F+  ++ YR PE + I Y+L D     K+++
Sbjct: 185 EKVKVEYVAVDAAPFATRATATDEEVAARFQSRREAYRIPERRVIGYLLLDAMALSKEVK 244

Query: 248 ISNDELQAEYEKNKEKYFSP--------EIRTVEQLVFPNQKEADEA-------FQSLKK 292
           +S+ +++  YE ++ ++  P        E++  +    P     +EA          +K 
Sbjct: 245 VSDVDIRTYYEDHETQFQQPDEACARHIEVKVKQTADAPAGHTEEEARVLAQKLLDQVKG 304

Query: 293 GKKFIQLA----EEQGKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           G  F ++A    E+ G S     LG    E + P+  L  +IF+L        +   + G
Sbjct: 305 GADFAEVAKKSSEDPGTSSRGGDLGCGGPETWGPE--LGQAIFTLPVNQVSDLIRTQAHG 362

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           + I  V + +         VK+ I + +   K  E  +E   ++   LA G S+      
Sbjct: 363 FHIVQVLSRRQQGVQPLDSVKEGIRHILVQGKTRELAEERSSKISAALAKGESL------ 416

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS---YM 464
           EK   +    V       +G+ V  +   + LL R F     L +  +   P G+   ++
Sbjct: 417 EKAGQLYGLTVQKGAPIARGQRVPPLDSPD-LLARAF----TLKRGESNPEPFGTAQGWL 471

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
           ++ + +    R  +L EV   V+ D +  K       KA Q  L    EG         L
Sbjct: 472 FIDVLDIQAPRLPELAEVQDRVRADLQDEKARALARDKAVQ--LRAQAEGAGLDKAAVAL 529

Query: 525 GASLL---TTNQINRMDNENKFFGYDGISQ-----VFSGPVE-MVKCFPIENGLSYVVFK 575
           G  L+   TT  + R     + FG  G +Q      FS PV+ + +  P   G  Y V +
Sbjct: 530 GPGLVRKETTTPVTR----GQSFGDLGTNQALEDAAFSLPVQGLSEALPSPGG--YAVLR 583

Query: 576 V-TNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           V   +   P     +K + +S L Q   + L  + I   + ++ +      ++R
Sbjct: 584 VLEKTPFDPAAFAAQKAEVVSKLEQQQKRQLFQAYIERARDRFPIERRPEALRR 637


>gi|220934121|ref|YP_002513020.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995431|gb|ACL72033.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 633

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 101/515 (19%), Positives = 215/515 (41%), Gaps = 48/515 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  +  W+A + ++++ +PF +WGL++  F  + +  V  V   ++P  ++   +
Sbjct: 1   MLQKIRDKATGWIAYVIVILISIPFALWGLNE-YFGGAPAQVVAEVNGVEIPARAYQQEF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+   ++Q  G  + S       + +  L  L+    + Q  ED G       V  EI 
Sbjct: 60  QQQRQQLAQMFGGRIPSGAVDENMMRENALQTLIRRELVAQMAEDKGFRISASAVASEIR 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL-- 178
             P F  +D  F  + +   +     +++     +   +++  ++  F  G + S  L  
Sbjct: 120 AVPGFQ-RDGVFDPERYRQIME----SQRRSPAEFEARVAQAMLLEQFQSGYQRSAFLPE 174

Query: 179 --LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             ++   R   E R V                S   +  ++ ++ + ++ PE  R++Y+L
Sbjct: 175 AMVEDFVRLRHERRQVSVHRFPAEAYAERVQVSEDDIAAFYAEHGEQFQTPERLRLAYLL 234

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD------------ 284
            D     +++ ++ D+L+ EYE+  +++  PE R    ++   +  AD            
Sbjct: 235 LDDATLAEQVSVTEDDLRREYEQRSDRFTQPEERRASHILIRVEPGADADTVAAAEARAR 294

Query: 285 ---------EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
                    E F  + +      +AE  G  L  I+ G        D +L   +F++ + 
Sbjct: 295 EARARIEAGEDFAEVARAVSDDPMAETAGGDLGYIARGDI------DPTLEGVLFTM-RV 347

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL--EE 393
           GD +  +    G  I  +++I+ +    F+ V+ ++  + R  +      E  +RL  E 
Sbjct: 348 GDVSQPVRTGLGLQIVRLTDIEAARREPFEAVRDEVEAEFRSRRVEGLHIELTERLLTES 407

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
           F   GT    +    +   + +   D+  +    + +A+ P   ++L   F ++    ++
Sbjct: 408 FEQPGT----LEPAAEATGLSIAFTDWFTRQGADEGIASEP---EVLRVAFSQEVRQGRN 460

Query: 454 H-TVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
              + LPDG  + V++ E  PA  R LEEV  +++
Sbjct: 461 SDLIDLPDGRVVVVRLHEYEPAAPRPLEEVAEEIR 495


>gi|83644983|ref|YP_433418.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
 gi|83633026|gb|ABC28993.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
          Length = 628

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 169/402 (42%), Gaps = 34/402 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++  +AK+ + ++ + F  +G+   +  +SG   V SV  + +  S F   +
Sbjct: 1   MLQNIRDNAQGVIAKVIVGLIVMTFAFFGVESIVGGLSGEPEVASVNGEPITKSQFERKF 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++        +G   +  +     L K  LD  ++     Q   + G       +   I 
Sbjct: 61  ERNRLQAIAGMGENYDPSKIDENKLRKTTLDEFITREVQLQAAREAGFAVSDATINNFIT 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL-- 178
           + P+   KD K+ ++ F+  L R G+   E+     K LS   +VG    G+  ++ +  
Sbjct: 121 QWPMAQ-KDGKYDNNQFMEALRRIGMRPMEF----RKELSDELLVGQLQSGIAQTSFVIG 175

Query: 179 --LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             L++  R   + RS  Y  LN   V    + S+A   +++   KD +  PE   ++YI 
Sbjct: 176 EELNELLRMERQTRSFSYYRLNAEDVAKDIEISDAEAEEYYNSNKDEFILPERIIVNYIE 235

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---------ADEAF 287
                   + E+S++E+   YE+ K+++   E R    ++     +         A E  
Sbjct: 236 LTRDALVGRAEVSDEEVSERYEQEKKEFLPSEQRRASHILIETSDDVSDEQALAKAQEVE 295

Query: 288 QSLKKGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           Q LK G  F  LA+E          G  L     G+F + +       + +FS+   GD 
Sbjct: 296 QKLKDGGDFAALAKEFSSDLGSANDGGDLGYAQKGAFVEPF------EEKLFSM-NVGDI 348

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           +  +   +GY I  ++++K     S +E K  I  +++  KA
Sbjct: 349 SEPVKTEYGYHIIKLNDVKAVEMPSLEESKDRIVKELQEQKA 390


>gi|269468957|gb|EEZ80538.1| Parvulin-like peptidyl-prolyl isomerase [uncultured SUP05 cluster
           bacterium]
          Length = 613

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 107/506 (21%), Positives = 224/506 (44%), Gaps = 47/506 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IR  ++ W+A + + ++ VPF ++G+++  F+ + +  V S+   ++    F+N +
Sbjct: 1   MLSSIRNKTKGWLAYLIVGLITVPFALFGINE-YFTGTSNIIVASIDGDEISKEDFLNEF 59

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             +   + Q++     SER  +     L + ++ ++V+   L QF + +        +  
Sbjct: 60  NPQKRRLQQRL-----SERYDTEFDAVLKQSVMRDMVNRRLLSQFSDGLDYATTSVELQA 114

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175
            I  + LF   D KFS D +   L   G +  EY     K L+++ +   F+    + PS
Sbjct: 115 MIQSNDLFQ-VDGKFSIDTYQKLLRLNGYSTAEYESIKLKELTQSQIKYNFLDSAFITPS 173

Query: 176 NL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
            L     L DQ ++F        YI ++  +       +   +  ++   K ++  P+  
Sbjct: 174 ALKNLQALNDQQRKF-------SYIQIDADNYLDKVKVNVKSVKDFYNNQKASFFDPQKV 226

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           +I ++   + +  K I+I++DEL   YE  K+++ +   R  + ++   Q+ A +    +
Sbjct: 227 KIDFVELSLEKIAKNIKINDDELFNFYEDEKDRFTTEGERKAQHILVQTQETAKKVVGLI 286

Query: 291 KKGKKFIQLA----EEQGKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGS 345
             G  F +LA    E+ G       LG F+K   +P+      +F + ++G+ +  +   
Sbjct: 287 NAGGDFAKLAKEYSEDTGSKDDAGDLGFFTKGVMVPE--FETKVFGM-QEGEVSGAVKSE 343

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           FGY I  ++ IKP    SF+  + ++       +  + + +   +L   LA   S++E+S
Sbjct: 344 FGYHIIKLNKIKPGSVKSFESARSELTKLYTQNQVQKSLYDLTDQLAN-LAYEVSLEEVS 402

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT---VALPDGS 462
            +  +V   +    F  K+          Y+++ +   F  D  L+K      + L    
Sbjct: 403 DQMNLV---VNTTQFFAKNTN-------DYEKKFVDAAFS-DVVLNKGENSEIIELSKDK 451

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKK 488
           ++ V++KE    R +  +EV  ++ K
Sbjct: 452 FIVVRLKEKTVKRQKTFDEVKDEINK 477


>gi|226953081|ref|ZP_03823545.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. ATCC 27244]
 gi|226836173|gb|EEH68556.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. ATCC 27244]
          Length = 623

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 135/653 (20%), Positives = 257/653 (39%), Gaps = 69/653 (10%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVP---FSSFI 57
           +E  R   + W+ K+ LV+   P  + G+ +  FS    + V  SV  Q +      S I
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGI-EGYFSGGNKADVAKSVNGQDISNKELESAI 59

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++K +   + Q    ++N        + ++ +D LV+ + L Q  E +G+     ++  
Sbjct: 60  KNYKDQYLALVQGDESLLNLS-----AIQERAMDALVARSLLSQQAEKLGISLSDAQLEQ 114

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGM 172
            +A+ P F  ++ +FS  ++ + L   G+  +  I     DH  KM+S + +    V   
Sbjct: 115 MLAQQPSFQ-QNGQFSQQLYENYLRSVGLTNQALISSLRQDHALKMISSSLIDNALV--- 170

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             S   L Q      E R++    +           S   +T ++ K+K+ ++      +
Sbjct: 171 --SKSDLQQLANLQTEQRTLHLASIKLDDYKKGVTASTQEITDYYNKHKNEFKQVASVDV 228

Query: 233 SYILFDVHEKEK-KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
            Y++      E+  + +++ +LQ  Y    EK      R V+ ++    +  D A Q L 
Sbjct: 229 DYVVLSPALLEQANLAVTDADLQQAYAAFVEKQQQSVKREVKHILVTTDERDDAAAQKLI 288

Query: 291 -------KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTPV 341
                  + G  F Q A +  +  S  + G     Y P    AD  +  +  K G  +  
Sbjct: 289 NDVYAKIQSGMTFAQAASQYSEDPSSKNQGGLVSAYAPGAFSADFDNAVNTLKNGQVSKP 348

Query: 342 IHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
           +   +GY I  V    P+  + SF+  K  +  ++  TKA+    +    L E +    S
Sbjct: 349 VKTQYGYHIIEVQ--VPTVNIPSFESEKARLTAEVEKTKAANLFSDTVNNLNEMVVGSDS 406

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG---KDDPLSKDHTVA 457
           ++ +++  K   ++      + K +       I     +  ++F    K+   +    + 
Sbjct: 407 LEVVAQEVKAARVE------SAKAITLATQHPILSDLNVKVKLFSDDVKNGDRNASSNIQ 460

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           L +G  +W+++++  PA  + L EV T+VK      K  E+ + KA Q     +K     
Sbjct: 461 LANGDSIWIKVRDYHPAGIKPLSEVTTEVK-----AKVVEQKAYKAAQ-----AKMASIL 510

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-----VFSGPVE------MVKCFPIE 566
            D      A ++  +Q+N  +N   F    G+ +      FS P              + 
Sbjct: 511 ADFKTQPAAQVVAKSQVN-FENAGTFARSHGLKRAIERAAFSIPAPSKEGMWSATTAKLP 569

Query: 567 NGLSYVVFKVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           N L  V     +S V    P +E  +      Q   + +L+   AYLKSQ  +
Sbjct: 570 NELVIVAVSNVDSSVASSLPEKELLELKQLYQQFRGQQVLEDYTAYLKSQADI 622


>gi|291616553|ref|YP_003519295.1| PpiD [Pantoea ananatis LMG 20103]
 gi|291151583|gb|ADD76167.1| PpiD [Pantoea ananatis LMG 20103]
          Length = 646

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 124/560 (22%), Positives = 247/560 (44%), Gaps = 51/560 (9%)

Query: 1   MLEIIRKASRTWVAKI--------FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP 52
           M++ +R AS   V KI        F++     +LI G +D    V+G    +S  +    
Sbjct: 24  MMDNLRAASNHVVLKIILGLIILSFVLTGVGNYLIGGNNDYAAKVNGQE--ISRAQLDQA 81

Query: 53  FSSFINSWKQELG-MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD 111
           F+S  N  +Q LG   SQ  G     ++ R     ++ L  L+  A LD +I+D+ +   
Sbjct: 82  FNSERNRQQQMLGDQFSQLAGNDGYMQQMR-----QQALSQLIDQALLDSYIKDLHIAIS 136

Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
             +V   I     F   + KF +  + + +   G    +Y +   K L+   ++      
Sbjct: 137 DDQVKQAIFNQAAFQ-TNGKFDNAKYNAMIGNMGFTADQYAEALRKQLATQQLINAIANT 195

Query: 172 ----MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
                  ++ L+D       + R +    L+   + A    ++  + Q+++++K+++ AP
Sbjct: 196 DFMLKNETSKLVD----LVAQKRDIQTATLDVNALAAKQTVNDDEINQYYQQHKNSFMAP 251

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R+SYI  D    ++    S+ ++QA Y+++K  Y  P+      +    + +A+   
Sbjct: 252 EQFRVSYIKLDAAGMQEN--ASDADIQAWYDQHKADYTQPQRDRYSVIQTKTEADANAIL 309

Query: 288 QSLKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
             LK G  F +LA+   KS+  IS      +G       PD  L ++   L +KG  + V
Sbjct: 310 AQLKSGADFAELAKT--KSIDPISARKGGDMGWLEPSTTPD-ELKNA--GLKEKGQLSGV 364

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           I  S G++IA + +I P       +V+ ++A++++     EK  + + +L++ ++   S 
Sbjct: 365 IKSSVGFLIARLDDIIPEQVKPLADVRSEVADEVK----QEKAVDAFYKLQQKVSEAASN 420

Query: 402 DE--ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVA 457
           D   ++  E+   +      +  +D   K++     K Q +F   + G++     +  + 
Sbjct: 421 DNESLAGAEQASGMKATETGWFSRDDVPKDLDFDAVK-QAIFNGGLVGQNGAPGNNSDII 479

Query: 458 LPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
             DG   +V +I E  P     LE+V   +    K  K  ++  ++A++L+ +  K GK 
Sbjct: 480 SVDGDRAFVLRISEHKPEAVEPLEKVKAQIIDTLKHDKATQQAKAQADKLLADL-KAGK- 537

Query: 517 FRDIGKNLGASLLTTNQINR 536
            +D+ K  G +L  +  ++R
Sbjct: 538 -QDVLKAAGLTLSASKTVDR 556


>gi|116747610|ref|YP_844297.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696674|gb|ABK15862.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 632

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/407 (18%), Positives = 178/407 (43%), Gaps = 21/407 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML + R+ S++W+ K  L+++ + F+ WG   A +     + VV +  + +    + N +
Sbjct: 1   MLNLFREHSKSWMIKALLILVAIVFVWWG--GATYQSKSDTAVVQIDDEFISERDYYNVY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ +     ++G   + +    + L  ++LD L++   + +   ++GL A    V   I 
Sbjct: 59  EKMVTRYRTQLGKAWSEKLVEEMNLKGQVLDMLINRYLVSKAARELGLSASTEEVRRRIL 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P+F   D +F    +   L +E +  + +     + ++   ++      +  ++  + 
Sbjct: 119 EYPVFLN-DGRFDQLTYERVLRQERLTPEGFEKDIAESIAYERLLNFIKRQVVVTDEEVT 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R  +    + Y + + +              ++F+ +++ Y  PE +R S +L+   
Sbjct: 178 ADYRTNYGQVQIAYALFDPKSFEDKVTVDEQGAQEYFQNHRERYMEPEKRRFSLVLYKPE 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288
               +  ++ D+++  Y+ +  +Y   +     Q++F              + EA++   
Sbjct: 238 AYMDQAGVTGDDMRRYYDDHISEYRHEQQVRARQILFRLKEDAAEEEIAKARSEAEKVLA 297

Query: 289 SLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             +KGK F +LA +  +  +       LG+F++  + +   +D+ F++ KKG+ + ++  
Sbjct: 298 EARKGKDFAELARKYSQDTATAKNGGDLGAFTRGQMLE-PFSDAAFAM-KKGEISDLVET 355

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             G+ I  V  I P  T SF+E +  I   ++  KA E   E  ++L
Sbjct: 356 PDGFHIIKVEEIIPEKTTSFEEARSGIEQAVKRQKAREAAYEKARKL 402


>gi|254507758|ref|ZP_05119889.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16]
 gi|219549283|gb|EED26277.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16]
          Length = 364

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 157/351 (44%), Gaps = 12/351 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   +   +G+ T   VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGAGN-TAAKVGNVEIDRGEFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++ +      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLLEQHAASLGLRVSDAQVRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF  +++ S L R G   + + ++  + L R  ++            
Sbjct: 120 MIVEMPQFQ-VDGKFDQEIYQSSLRRAGFTPESFAEYLRRDLVRNQLLTAIQASDFSLPA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R V  + L      A  + S+  +  ++E+  + Y  PE  +++YI  
Sbjct: 179 EVEAQAKLLTQTREVQTLSLPLDDFAAKVELSDDEIQGYYEQNSERYTRPEQVKVAYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
              + +  I +S+++ +  +E++ +KY S E R V  ++    +Q +A      L  G  
Sbjct: 239 SAQKLKDAITVSDEDAKKYFEEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGTD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
           F  LAEE+    G +    SLG   ++ + D +  ++ F+L   GD T ++
Sbjct: 299 FAALAEEKSDDFGSASEGGSLGWIERD-VMDPAFEEAAFALKNVGDVTGLV 348


>gi|327484462|gb|AEA78869.1| Peptidyl-prolyl cis-trans isomerase ppiD [Vibrio cholerae
           LMA3894-4]
          Length = 616

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 105/515 (20%), Positives = 215/515 (41%), Gaps = 17/515 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L  +SG +   +    ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL--ISGGNN--AAANAEISRGDFEQAY 56

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 57  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 116

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G       
Sbjct: 117 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 175

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 176 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 235

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 236 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 295

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F  LA+E+ + L   + G       PD    +   + F+L +KG  + ++   FGY I  
Sbjct: 296 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 355

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           + +IK      + EV++ I  ++   +A +        LE+ +A   S D +    K +S
Sbjct: 356 LDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 413

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
             +   DF   + +  EV   P   Q L     K+D L+ +     P+   +    +   
Sbjct: 414 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 471

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           P     L+EV + V +    +K  ++     NQLV
Sbjct: 472 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 506


>gi|54294744|ref|YP_127159.1| hypothetical protein lpl1821 [Legionella pneumophila str. Lens]
 gi|53754576|emb|CAH16060.1| hypothetical protein lpl1821 [Legionella pneumophila str. Lens]
          Length = 624

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 115/519 (22%), Positives = 225/519 (43%), Gaps = 57/519 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+     S   S   V V  + +   +F  ++
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60

Query: 61  K-----QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +     Q+L  ++           A    L  ++L+ +++     Q     G E    + 
Sbjct: 61  RRTRAQQDLPQMT----------AADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQA 110

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I + P F  +D  FS   +   L+      + +     + +        F+G    S
Sbjct: 111 NAAIVQIPQFQ-EDGHFSAQRYQQALSGALFTPETFQKEVRQGMLLNQQRFAFMGT---S 166

Query: 176 NLLLDQAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             L D+ KRF   Y + R  DY+ + +      A  S   +  ++ ++   +   E   +
Sbjct: 167 FALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTL 226

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN----------Q 280
            Y+L  +H+ + +I+IS DE+++ YE+NK  Y +P    V  ++F  P           +
Sbjct: 227 DYVLLSMHDIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIK 286

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA----DSIFS-LAKK 335
           ++ADE +  LKK  +     ++   S SD  L   +K  +P ++      D + S L + 
Sbjct: 287 QKADEVYNDLKKHPEQF---DKYVASKSDDKLSIANKGILPWITGGQNEYDRVLSNLTRP 343

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G  +  +   +GY I  +   KP  T S QEV+  I +Q+    A  K  +  ++L + L
Sbjct: 344 GQISIPVQTKYGYEIFKLIAYKPVTTKSLQEVENIIKDQLTSDMAQAKYAQVLEQLTD-L 402

Query: 396 ALGT--SMDEI--SRREKIVSIDLPLVDFAGKD--VKGKEVAAIPYKEQLLFRVFGKDDP 449
           +  T  S+D +  S + KI   + P   + GK    K K+V    +   +L  +    +P
Sbjct: 403 SYQTPDSLDPVLDSLKLKIQHTE-PFSRYGGKQPITKNKQVIHAAFSTDVL-ELGNNSEP 460

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
           +  D      + S + +++K+ IP+R++ L+EV   +KK
Sbjct: 461 IQID------NDSVIVLRVKKHIPSREQTLDEVRDQIKK 493


>gi|328953890|ref|YP_004371224.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454214|gb|AEB10043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 629

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 162/398 (40%), Gaps = 26/398 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK + +W     +  + V F++WG+    F  +    V  V   K+    +  ++
Sbjct: 1   MLDFMRKHASSWFVTGIIGAIVVVFVLWGIGS--FRSAQFQEVAEVDGAKIYLPEYYKAY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +  +    +++G   N E A+++ L ++ L  ++    + Q    +GL      +   I 
Sbjct: 59  QNLVRNYQEQMGGESNEEVAKTLRLREQALGQMIDELLIKQASNRLGLNVTDAELRDYIR 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           R+P F   +  F+   +   LAR  +   EY +   + L    +V       + S   L 
Sbjct: 119 RNPAF-ADERGFNEKRYHQLLARRRLPASEYEEQERQQLLVQKMVHFITSFAKISEADLQ 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +A R   E   V+Y+VL             A + Q++E + + +R PE  ++ YI F  +
Sbjct: 178 EAYRLQQETVRVEYVVLGPSQFLKEQQAGAAEMQQYYESHPETFREPEKVKVRYIFFKFN 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           + + +I+   ++++  Y  + E Y  P+   V QL      +A  A Q     ++F  LA
Sbjct: 238 DFDGQIKADREKIETYYYDHLEDYSRPQTIRVSQLFLEPPSKAGTAEQ-----QRFRLLA 292

Query: 301 EE-QGKSLSDISLGSFSKEYIPDVS--LADSIFSLAKKGDFTP---------------VI 342
           E+   ++ +  S     K+Y P+    +      L K+G   P               + 
Sbjct: 293 EKLLQRARAGESFEQLQKKYSPEAEGRIQAGELGLVKRGQNIPEWEAVAFHLKKGGIGMA 352

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
               GY +  V++I    T    EV+  +    R  +A
Sbjct: 353 KTPRGYYLIKVNDILERKTPPLAEVQAQVEKSWRAEEA 390


>gi|319941578|ref|ZP_08015904.1| hypothetical protein HMPREF9464_01123 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804948|gb|EFW01790.1| hypothetical protein HMPREF9464_01123 [Sutterella wadsworthensis
           3_1_45B]
          Length = 633

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 122/550 (22%), Positives = 234/550 (42%), Gaps = 46/550 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R+  R W+  I +V +   F++ G+          +++V VG   +   +F  + 
Sbjct: 1   MLQAFREHKR-WLMVIAMVFIIPSFVVTGIYSYNRMTQSDNSIVKVGEVSITPENFDLAK 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  + Q++G   ++    +    + +L  L+  A ++Q +    +     +    I 
Sbjct: 60  RQQLERLRQEMGESFHASLLDTPQAREDLLRMLMDEAAINQVVAKNHISVSEAQAVALIK 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +      D KFS + +   L  +G ++++++      L++  VV            L +
Sbjct: 120 NADALK-VDGKFSAERYEQFLRSQGKSDQQFVMEIRNDLAKEAVVSGVSATYPVPKALTE 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF--D 238
           Q      E RSV  +VL           ++  +  ++  +  ++ +PE+ +  Y++F  D
Sbjct: 179 QFYEILTEERSVRTLVLPADDYLDKVAVTDEEIKAYYNAHLKDFLSPEHIKAQYVVFSPD 238

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSLK 291
               +K    S D+L+  YE+NK+++  PE R    ++          +K+A+E    +K
Sbjct: 239 AFSNQKA---SLDDLKTFYEQNKQRWTVPEERRASHILIEFGDDKEAARKKAEELANEVK 295

Query: 292 KG-KKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
               KF +LA+         EQG  LS    G  +K      +  D++F+ AKKGD    
Sbjct: 296 ADPSKFAELAKANSVDTGSAEQGGDLSFFGRGVMTK------AFEDAVFN-AKKGDIVGP 348

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           I   FG+ + +V++I P+    F++VK +I  +    +A   ++E     +EF  L    
Sbjct: 349 IETEFGWHVIYVTDIHPAAVEPFEDVKSEIEREYAQQQA---IREFSTHADEFTNLVYEQ 405

Query: 402 -DEISRREKIVSIDLPLVDFAGKD-VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
            D +        + +   DF  ++ V   E++ I   E +   +FG +    K +T A+ 
Sbjct: 406 SDTLEPAAAKFGLKVETADFVTRNGVTDPELSQI-ITEHVAESLFGTEALKEKRNTSAIE 464

Query: 460 DGSYMWV--QIKESIPARDRKLEEV---LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
                 V  ++ E  P  +R L+EV   +TD  K  K    A E    A Q  L   ++ 
Sbjct: 465 VSGNRLVSARVVEYFPEAERPLDEVKGLITDALKRQKAGAMAIE----AGQAKLASVQQA 520

Query: 515 KNFRDIGKNL 524
           K+    G  +
Sbjct: 521 KSVDGFGDEM 530


>gi|221067844|ref|ZP_03543949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni KF-1]
 gi|220712867|gb|EED68235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni KF-1]
          Length = 632

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 173/417 (41%), Gaps = 47/417 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M E IRK S+  +  I L +L +P F+  G++   F+ S S TV  V    +    + N+
Sbjct: 1   MFESIRKHSKFVM--ILLFLLIIPSFIFVGVNQNYFTES-SQTVARVDGHDITQQDWDNA 57

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFIEDIGLEADHG----- 113
            + E   +           RA++  +D K+LD+  +  ATL++ + D  L A        
Sbjct: 58  HRAESDRL-----------RAQNPSMDAKLLDSPEARYATLEKLVRDRVLAAAATKMHLT 106

Query: 114 -------RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
                  R   EI         D     + + + +  +G+  + +  +  + L+   V+G
Sbjct: 107 TPDAQLVRTLREIPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLG 166

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
                   +   L QA    ++ R +     +         P+ A L  ++E +   ++ 
Sbjct: 167 AVSSTSFTTAAQLQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYESHTSQFKQ 226

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           PE   + Y+  D+   EK I +S D+L+  Y++N  +   PE R    ++    K+   A
Sbjct: 227 PEAATVEYVQLDLATVEKSIVLSEDDLRTYYKENAARLAGPEERRASHILINAAKDLPAA 286

Query: 287 -------------FQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSI 329
                         Q  K  K F Q+A    ++ G + +   LG F ++ +      +++
Sbjct: 287 EREKAKAKAEQLLAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGRDAMVK-PFEEAV 345

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           F + K+GD + V+   FG+ I  ++ IK     +F+E++  +   ++  +A  K  E
Sbjct: 346 FKM-KQGDISDVVESDFGFHIIELTGIKQPKVPTFEEMRPKLEADLKQQQAQRKFAE 401


>gi|264677817|ref|YP_003277723.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
 gi|262208329|gb|ACY32427.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
          Length = 632

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 174/417 (41%), Gaps = 47/417 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M E IRK S+  +  I L +L +P F+  G++   F+ S S TV  V    +    + N+
Sbjct: 1   MFESIRKHSKFVM--ILLFLLIIPSFIFVGVNQNYFTES-SQTVARVDGHDITQQDWDNA 57

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFIEDIGLEADHG----- 113
            + E   +           RA++  +D K+LD+  +  ATL++ + D  L A        
Sbjct: 58  HRAESDRL-----------RAQNPTMDAKLLDSPEARYATLEKLVRDRVLAAAAAKMHLT 106

Query: 114 -------RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
                  R   EI         D     + + + +  +G+  + +  +  + L+   V+G
Sbjct: 107 TPDAQLVRTLREIPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLG 166

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
                   +   L QA    ++ R +     +         P+ A L  ++E + + ++ 
Sbjct: 167 SVSSTSFTTAAQLQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYEAHTNQFKQ 226

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           PE   + Y+  D+   ++ I +S D+L+  Y++N  +   PE R    ++    K+   A
Sbjct: 227 PEAATVEYVQLDLAAVQQGIVLSEDDLRTYYKENAARLAGPEERRASHILINAAKDLPAA 286

Query: 287 -------------FQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSI 329
                         Q  K  K F Q+A    ++ G + +   LG F +E +      +++
Sbjct: 287 EREKAKAKAEQLLAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGREAMVK-PFEEAV 345

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           F + K+GD + V+   FG+ I  ++ IK     SF+E++  +   ++  +A  K  E
Sbjct: 346 FKM-KQGDISDVVESDFGFHIIELTGIKQPKVPSFEEMRPKLEADLKQQQAQRKFAE 401


>gi|78222137|ref|YP_383884.1| hypothetical protein Gmet_0917 [Geobacter metallireducens GS-15]
 gi|78193392|gb|ABB31159.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
          Length = 549

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 186/426 (43%), Gaps = 34/426 (7%)

Query: 1   MLEIIRKASRTWVAKI---FLVVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML I+RK  ++ V K+    +V+ F+   FL+WG  D    ++ SS  V V R KV +  
Sbjct: 22  MLGIMRKYKQSIVIKVVFGLIVLSFIGTIFLVWGKGDG--GLTPSSYAVKVDRTKVSYEE 79

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F  ++ +   + +Q  G  +  E  + + L K+ LD+L+  A L +  +D+G++     V
Sbjct: 80  FQRTYYRLRDIYTQIYGPALTPEVEKQLNLKKQALDSLIDAALLRKAAKDMGVKVSEEEV 139

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              IA  P F  K+  F    + + L    +  KE+       L    +V      ++  
Sbjct: 140 QKAIAAIPAFQ-KNGAFDSAQYFAVLKANRLAPKEFEAGQKDEL----MVKKAQDQIKAK 194

Query: 176 NLLLDQAKRFYFENRS----VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
             + D A R  ++ R+    + +   +   +      S+  LT +  K ++ ++ PE   
Sbjct: 195 VQVTDDAARQLYKKRNDRLNLQFTSFSPEELKGEIKLSDQELTDFLAKNQNEFKTPEQIS 254

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKY-----------FSPEIRTVEQLVFPNQ 280
           +SY+L D  +   K+E++  ++Q+ Y+KN ++Y              +++   Q  +  Q
Sbjct: 255 VSYVLADPAKLAGKVEVTEADIQSWYQKNIDRYQGKGGILPLAEVKEQVKADAQRFYAGQ 314

Query: 281 KEADEAFQSLKKGKK---FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS---LAK 334
           K  + A  S+ K K       +A E G ++S+  L + +K   P ++    + +   L K
Sbjct: 315 KAYELAAASVNKHKTAGDLAAVARELGVAVSETPLFT-AKAPAPALAGEKEVLTRAFLLK 373

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           + +    +    G  I  +   KPS      +++  +  + +  +A E  K+  +  +  
Sbjct: 374 QNELGGPVETPKGIYILKLKERKPSDVPPLAQIRAKVEERAKAVRAVELAKKKAEEAQAK 433

Query: 395 LALGTS 400
           LA G +
Sbjct: 434 LAKGDT 439


>gi|261868689|ref|YP_003256611.1| peptidyl-prolyl cis-trans isomerase D [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414021|gb|ACX83392.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 615

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 163/387 (42%), Gaps = 26/387 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +  AS  W +K     + V F+I  ++  L+S   SS    V  +++   +F N +
Sbjct: 2   VMEKLHGASNNWASKFLFGFITVTFVISSMAGYLYSRIDSSAA-KVNGEEISQQAFQNQY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                + SQ +             L +++L +L+    L Q+++D+ L     R+  EI 
Sbjct: 61  ----NIASQNLSPQEADSPTVVANLKRQVLSSLIDQELLRQYVKDLKLGVSDERIKQEIV 116

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P F   + KF + ++   L   GI+ + Y  +  + L    +      G+    + + 
Sbjct: 117 TTPSFQN-NGKFDNVLYQQLLQSNGISAETYAGYVREALHLEQLQSGL--GITAFTVPVQ 173

Query: 181 QAK--RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           Q    + +F+ R V    L+     A    S   +  +++ +K ++  PE  ++ Y+   
Sbjct: 174 QEALTKLFFQRRDVRLATLSLADEIAKQTVSAEEIQAYYDAHKADFTLPESVKVQYLDLS 233

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
               EK I ISN E+   Y+ NK ++ +   + +  +    +++A + +Q L+ G  F  
Sbjct: 234 GANMEKNINISNVEIAQYYQDNKSQFMTQGQQRLAHIEVKTEQQAQDLYQQLQNGADFAT 293

Query: 299 LAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           LA+         E+G  LS +S G F K +    +  D        G F+  +     Y 
Sbjct: 294 LAKNHSIDPISAEKGGDLSWVSAGEFPKVFEDAANALDV-------GKFSQPVKLDNSYH 346

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMR 376
           I  V   K S  +  + V+  I  Q+R
Sbjct: 347 IILVEERKDSAVLPLERVRPQIVAQIR 373


>gi|332529107|ref|ZP_08405071.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
           ATCC 19624]
 gi|332041330|gb|EGI77692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
           ATCC 19624]
          Length = 647

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 116/546 (21%), Positives = 222/546 (40%), Gaps = 60/546 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M E +RK ++  +A   LV+L VP F++ G+            V  VG+ ++    +  +
Sbjct: 1   MFENLRKHNKILMA--VLVLLIVPSFVLVGIDGYTRMTQKDRVVAHVGKIEITQGEWDAA 58

Query: 60  WKQELGMISQKI----GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + E   + Q +      +++S+ AR     + +L+ ++    L Q   D  L     R+
Sbjct: 59  HRSETDRLRQMMPNLDARLLDSDAAR-----RGVLERMIRERVLQQAALDAQLNVSDARL 113

Query: 116 WGEIARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
           + E+   P          K   + + + LAR+G++   +       L+   +     G  
Sbjct: 114 FQELQTIPAISQLRNAQGKIDMEAYQALLARQGMSPAGFEAQLRADLAVNQIQSSVTGTA 173

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             +N   D A   + E R V                S A L  +++  +  ++APE  RI
Sbjct: 174 VQTNTSADLALDAWLERREVQVARFTPADYATRVQVSEADLQAYWQANQGLFQAPEQARI 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------ 286
            YI+ D+    K+  ++ ++L+  YE+N ++   PE R    ++    K+A  A      
Sbjct: 234 EYIVLDIDALRKEARVNEEDLRNYYEQNVDRLSGPEERRASHILITAAKDAPAAERQKAR 293

Query: 287 ------FQSLKK------GKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIF 330
                    L+K       K F +LA +  +     S    LG F ++ +  +   ++ F
Sbjct: 294 EQAQALLAELRKAPANAQAKLFAELARKHSQDPGSASRGGDLGYFGRKAM-TLPFEEAAF 352

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +L K+G+ + V+   FGY +  V+ IK     ++ E++  +  ++R    S++ +  Y  
Sbjct: 353 AL-KQGELSDVVETDFGYHVITVTGIKKPKAKTYAELRPSLEAEIR----SQQAQTRYAE 407

Query: 391 LEEFLALGT-----SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
             E    G      S+  ++ + ++ SI    V      V   +   +    +LL  VF 
Sbjct: 408 AAEAFTNGVYEQPDSLKPVADQLRL-SIQTATVSREPAQVTA-DAQGVLTNARLLSAVFS 465

Query: 446 KDDPLSKDHT--VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
            D   +K +T  V +        ++ + +PAR   L EV   V++          VS++A
Sbjct: 466 DDAIQAKRNTEAVEISPSRLAAARVVQHLPARTLPLAEVQAAVRE--------RVVSARA 517

Query: 504 NQLVLE 509
            QL  E
Sbjct: 518 AQLARE 523


>gi|326387876|ref|ZP_08209482.1| hypothetical protein Y88_0791 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207922|gb|EGD58733.1| hypothetical protein Y88_0791 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 645

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 179/413 (43%), Gaps = 18/413 (4%)

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
           +++L  L+  A + ++ +  G+      +  EIA+ P F G D KFS  V+   +A+ G+
Sbjct: 92  EEVLSGLIDRAAVQEWGQKNGIGVSDRLIDSEIAKLPAFQGPDGKFSQQVYNQLIAQRGL 151

Query: 147 NEKEYIDHYTK-MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
            +K+  +   K ++ +  + G   G   P N +  +      E RS   ++L ++   A 
Sbjct: 152 TDKQVREDIAKGLMGKLIMAGASEGAAMP-NGVAQRYAELLKEKRSGGILMLPSQ---AF 207

Query: 206 ADPSNAVLTQWFEKYKDN---YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
           A  + A   Q  + YK N   Y+ PE + I Y+L D    +     S+ ++Q  Y+ N  
Sbjct: 208 APKAPATDQQVADFYKANIVRYQRPERRTIRYVLVDEAAIKNLGAPSDADIQKRYQANAA 267

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
            Y   E R++ Q++ P+Q  A      L  GK     A  +G + + I+      + + D
Sbjct: 268 LYAPNETRSITQVILPSQSAAQAFAADLAGGKTIEAAAAAKGLAPAKIA-DRTHDQLVSD 326

Query: 323 VS--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
            S  +AD++FS A++G       G+ G+ +A V  IK +   +  + + +I   +   + 
Sbjct: 327 TSKAVADAVFS-AQQGKLITPTKGALGWSVARVDAIKKNPGKTLDQARAEIVLALTAERH 385

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
              + +   R+ E    GTS+ +I +     I + D    D +     G +++  P  + 
Sbjct: 386 KAAMTDLAARIGEQAENGTSLTDIVKAYGLTIQTTDPVQADGSNPAKPGDKLS--PDVQG 443

Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDW 490
           L+   F  +    +     LP+G    V  +    PA    L E+   V  DW
Sbjct: 444 LVQAAFAMEHE-GQPQVAGLPNGLRFAVFDVGAITPAAPAALAEIKAQVAADW 495


>gi|89901031|ref|YP_523502.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
 gi|89345768|gb|ABD69971.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
          Length = 640

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 180/411 (43%), Gaps = 34/411 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M + +RK ++  +A +FL  L +P F+++G+     S    S V  VG   +    +   
Sbjct: 1   MFDFVRKHTKIMMAVMFL--LIIPSFVLFGIDGYNRSRDAGSVVARVGSHDITQGEWDAV 58

Query: 60  WKQELGMISQKI----GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            K E   +   +      +++S +AR   L++ + D +++ A  D+F     L     R+
Sbjct: 59  HKSEADRLRASMPNLDAKLLDSPQARYATLERLVRDRVLAQAA-DKF----KLTTSDARL 113

Query: 116 WGEIARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV-VGMFVGG 171
              +  +P        D K   D +   +  +G+  + +     + LS   V  G+   G
Sbjct: 114 ARNLHENPSIAALRQPDGKLDMDRYRQLVGSQGLTPEGFEARVRQDLSVRQVEAGVGETG 173

Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
              +++  D A   +FE R V           +   P++A L  +++  +  +++PE+  
Sbjct: 174 FAAASVA-DVALNAFFEKREVQIASFTAADFASKVSPTDAELNAFYKANQALFQSPEHAS 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           I Y++ D+   +K I IS  ++++ YE+N E+    E R    ++    K+A  A +   
Sbjct: 233 IEYVVLDMDSVKKSIVISEADMKSYYEQNAERLSGKEERRASHILITAAKDAPAADRQKA 292

Query: 292 KGK--KFIQLAEEQGKSLSDIS------LGSFSKEYIPDV--------SLADSIFSLAKK 335
           K +  + ++   +   S +D++       GS +     D            D++F++ KK
Sbjct: 293 KARADELLKTVRQSPDSFADVAKKNSQDTGSAANGGDLDFFTRGAMVKPFEDAVFAM-KK 351

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           GD + V+   FGY I  +++IK     SF+E++  I   ++  +A  +  E
Sbjct: 352 GDISEVVESDFGYHIIKLTDIKKPVQRSFEELRAGIEADLKTQQAQARFAE 402


>gi|260596813|ref|YP_003209384.1| periplasmic folding chaperone [Cronobacter turicensis z3032]
 gi|260215990|emb|CBA28646.1| Peptidyl-prolyl cis-trans isomerase D [Cronobacter turicensis
           z3032]
          Length = 645

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 126/544 (23%), Positives = 234/544 (43%), Gaps = 59/544 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+S+ L     S+    V  Q++  +   N+ 
Sbjct: 21  MMDNLRAAANHVVLKIILGLIILSFILTGVSNYLIG-GNSNYAAKVNDQEISRAQLENAV 79

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + +++G     + S       L ++ L  L+  A +DQ+   + LE    +V  
Sbjct: 80  NIERNNLERRMGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLEISDEQVRQ 139

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   D KF +  + + +   G++  +Y       L+   +V   +G    S+ 
Sbjct: 140 SIFKNPAFQS-DGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVMG----SDF 194

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVLTQWFEKYKDNYRAPEYK 230
           +L    DQ    + + R      +    V A+A+    S   +  +++++ +N+++PE  
Sbjct: 195 ILPGESDQFAALFAQQRQARTATI---VVDALAEKQQVSEQEIKDYYQQHANNFQSPEQF 251

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           R+SYI  D     +    S DE+QA Y+K+++++  PE      +    + EA      L
Sbjct: 252 RVSYIKLDAAALAENA--SEDEIQAYYDKHQDEFGQPERNRYSLIQTKTEAEAKAILAQL 309

Query: 291 KKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           K+G  F  LA+E  KS+  I+      +G       PD    ++   L  KG  + VI  
Sbjct: 310 KQGADFATLAKE--KSVDVITARNGGDMGWLEPGTTPD-EFKNA--GLKDKGQLSDVIKS 364

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
           S G++I  + +  P+      EV  DI         S KVK++ K L+ F AL   + + 
Sbjct: 365 SVGFLIVRLDDTTPAKVKPLSEVHDDI---------SAKVKQE-KALDAFFALQRKVSDA 414

Query: 405 SRR--------EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHT 455
           +          EK   +     D+  +D    E+   P  + +    + G +     +  
Sbjct: 415 ANNDNESLVSAEKAAGVKAVDTDWFSRDAVPVELNFKPVTDAVFGGNLLGANGTPGSNSD 474

Query: 456 VALPDGSYMWV-QIKESIPARDRKLEEV---LTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
           +   DG   +V +I +  P  ++ L +V   +T + K  K +K A E + K    +L   
Sbjct: 475 IITVDGDRAFVLRITDHKPQAEKPLADVKEQVTALVKHQKALKAANEEAQK----LLSAL 530

Query: 512 KEGK 515
           K GK
Sbjct: 531 KAGK 534


>gi|148359402|ref|YP_001250609.1| hypothetical protein LPC_1300 [Legionella pneumophila str. Corby]
 gi|148281175|gb|ABQ55263.1| hypothetical protein LPC_1300 [Legionella pneumophila str. Corby]
          Length = 624

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 112/519 (21%), Positives = 227/519 (43%), Gaps = 57/519 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+     S+  S   V V  + +   +F  ++
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSLQISDAKVIVNDKPITMQAFETNY 60

Query: 61  K-----QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +     Q+L  ++           A    L  ++L+ +++     Q     G E    + 
Sbjct: 61  RRTRAQQDLPQMT----------AADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQA 110

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I + P F  +D  FS   +   L+      + + +   + +        F+G    S
Sbjct: 111 NAAIVQIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGT---S 166

Query: 176 NLLLDQAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             L D+ KRF   Y + R  DY+ + +      A  S   +  ++ ++   +   E   +
Sbjct: 167 FALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTL 226

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN----------Q 280
            Y+L  +H+ + +I+IS DE+++ YE+NK  Y +P    V  ++F  P           +
Sbjct: 227 DYVLLTMHDIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIK 286

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF-----SLAKK 335
           ++ADE +  LKK  +     ++   S SD  L   +K  +P ++   + +     +L + 
Sbjct: 287 QKADEVYSDLKKHPEQF---DKYVASKSDDKLSIANKGILPWITGGQNEYGRVLSNLTRP 343

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G+ +  +   +GY I  +   KP  T S QEV+  I +Q+    A  K  +  ++L + L
Sbjct: 344 GEISTPVQTKYGYEIFKLIAYKPVTTKSLQEVENIIKDQLTSDMAQAKYAQVLEQLTD-L 402

Query: 396 ALGT--SMDEI--SRREKIVSIDLPLVDFAGKD--VKGKEVAAIPYKEQLLFRVFGKDDP 449
           +  T  S+D +  S + K+   + P     GK    K K+V    +   +L  +    +P
Sbjct: 403 SYQTPDSLDPVLDSLKLKMQHTE-PFSRDGGKQPITKNKQVIHAAFSTDVL-ELGNNSEP 460

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
           +  D      + S + +++K+ IP+R++ L+EV   +KK
Sbjct: 461 IQID------NDSVIVLRVKKHIPSREQTLDEVRDQIKK 493


>gi|251791833|ref|YP_003006553.1| peptidyl-prolyl cis-trans isomerase D [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533220|gb|ACS96466.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Aggregatibacter aphrophilus NJ8700]
          Length = 615

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 167/385 (43%), Gaps = 22/385 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +  AS  W +K     + V F+I  ++  L++ + +S    V  +++   +F N +
Sbjct: 2   VMEKLNGASNNWASKFLFGFISVTFVISSMAGYLYTRTDNS-AAKVNGEEISQHAFQNQY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                + S+ +        A+   L ++IL +L+    L Q+  ++ L     R+  EI 
Sbjct: 61  ----NIASRNLSPQEADSPAQVANLKRQILSSLIDQELLRQYTNELKLGVSDERIKQEIV 116

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP F   + KF + ++   L   GI+ + Y  +  + L    + G             D
Sbjct: 117 TSPNFQN-NGKFDNALYQQVLQTNGISAETYASYVREALRLEQLQGGLAITAFSVPAQRD 175

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              + +F+ R++    L+     A    ++A +  +++ +K ++  PE  ++ Y+     
Sbjct: 176 ALAKLFFQRRNIRLANLSLADEIAKQTVTDAEIQAYYDAHKADFTIPESVKVQYLDLSGA 235

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
             EK I I++ E+   Y+ NK ++ +   + +  +    +++A + +  L+ G  F  LA
Sbjct: 236 NMEKNINITDVEIAQYYQDNKAQFTTQGQQRLAHIQVKTEQQAQDLYNQLQNGAAFADLA 295

Query: 301 E---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           +         E+G  LS +S G F K +       D+  +LA  G ++  +     Y I 
Sbjct: 296 KNHSIDPTSAEKGGDLSWVSAGEFPKVF------EDAANALA-VGQYSQPVKLDNNYHII 348

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMR 376
            V   K +  +  + VK  IA Q+R
Sbjct: 349 LVKERKDAGVLPLENVKAQIAAQIR 373


>gi|186475780|ref|YP_001857250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
 gi|184192239|gb|ACC70204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
          Length = 642

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/410 (21%), Positives = 166/410 (40%), Gaps = 27/410 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +  + LV+L  P L + G+         S+ V SV   K+    F N+
Sbjct: 1   MLDFFRNHQRLMMFMLILVIL--PGLGFVGIQGFRGFFDESANVASVNGHKITRGEFDNA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           W+Q++    Q +G   +++   +    K +LD L+    L    + + L      +   +
Sbjct: 59  WRQQMDRARQMLGAQFDAKMFDTPERRKDMLDGLIQQRVLADETQRLHLTVSDDALRRAL 118

Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D     + +   LA +GI   +Y +     +S   +            
Sbjct: 119 LADPVIGSLKNPDGSIDVNKYKELLAMQGITPDQYQEQVRYSMSMQQLPAAITQTSFTPK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L         + R V  +    +   +   P++A +  +++ ++D++  P    I Y++
Sbjct: 179 TLAQHLTELAEQQREVQGLAFRAKEYESKVQPTDAQIQAYYDAHRDDFATPATATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEADEAFQSLKKGK- 294
                       S+ EL+  Y+ N   + +P E+R    L+    K+A  A +   K K 
Sbjct: 239 LSPATLAAAANPSDAELKKYYDDNIAHFRTPGEVRASHILIV-APKDASSADKEKAKQKA 297

Query: 295 ------------KFIQLAEEQGKSLSDIS----LGSFSKEYIPD-VSLADSIFSLAKKGD 337
                       +F QLA++  +     S    LG FS   I    +  D++F + KK +
Sbjct: 298 REVLAQVKAHPDQFAQLAQQNSQDPGSASKGGDLGYFSPGMIAGGKAFDDAVFKM-KKDE 356

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
            + +I   FGY I  V++++PS T  F+EVK  IA  ++   A++   +D
Sbjct: 357 VSDLIQSDFGYHIVKVTDVRPSVTKPFEEVKDSIAKDLKAQLATKAFGDD 406


>gi|307544940|ref|YP_003897419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
           DSM 2581]
 gi|307216964|emb|CBV42234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
           DSM 2581]
          Length = 607

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 176/400 (44%), Gaps = 54/400 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS---TVVSVGRQKVPFSSFI 57
           ML+ IR  S +W AKI +  + V   ++G +++L  + G +   +V  V  + +P     
Sbjct: 1   MLQSIRDRSASWGAKIIIGAVVVAMALFG-AESLVGLLGGNDGDSVAKVNGESIP----- 54

Query: 58  NSWKQELGMISQKI--GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
              +Q+L +  Q+      V  E+ R   L  ++LD+L+S   L Q+ E+ GL     ++
Sbjct: 55  ---RQQLELEVQRAIRSGQVPPEQERE--LRSQMLDSLISERLLTQYAEEGGLHLSESQI 109

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I   P F  +D KFS ++F +RL+  G     + D     + R         G+  S
Sbjct: 110 DQLIVNLPEFQDQDGKFSRELFRNRLSSAGFTPLAFRDQLRADMKRR----QLQQGLAVS 165

Query: 176 NLLLDQAKR----FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
              L+  +R       + RS  +  L    + +  + S   L  ++E + D+Y+ PE  +
Sbjct: 166 EFSLESEERRLAALQRQTRSFRHHALTVDDLESRPEASEQELQAYYEAHADDYQRPEQVK 225

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEA--- 286
           ++Y++ D  +  ++ ++S  +L+  +  N E   +   R V  ++  F +Q+   EA   
Sbjct: 226 LAYVVLDREQMAEQADVSEQDLRDAW--NAEAAEAD--RRVSHIMVRFGDQRTRQEAEAR 281

Query: 287 ----FQSLKKGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
                Q L  G  F  LA E         +G  L  IS G F + +       ++ FSL 
Sbjct: 282 LEEVRQRLADGASFADLAAEYSDDTSTSDEGGDLGVISRGFFGEAF------DEAAFSLG 335

Query: 334 KKGDFTPVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIA 372
            +G  + ++    G  +  V+ + +PSF  S   + + +A
Sbjct: 336 -EGQVSDIVETDNGLHLIKVTELDRPSFEESRDRLARQVA 374


>gi|327398937|ref|YP_004339806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hippea maritima DSM
           10411]
 gi|327181566|gb|AEA33747.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hippea maritima DSM
           10411]
          Length = 631

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 172/368 (46%), Gaps = 33/368 (8%)

Query: 39  GSSTVVSVGRQKVPFS----SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           GS+T + VG  K+ F     ++ N +   + M++Q  G   + +  + + + +K +D LV
Sbjct: 39  GSNTAIEVGNTKISFQDYQKTYNNIYNFYVQMLTQLKGGNFSDDDLKKLNIKQKAIDILV 98

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
             A L Q  +  G++  +  V   I  +  F+  + KFS + +++ L    IN K+Y D 
Sbjct: 99  ERALLLQQAKKEGIKVSNEDVLRAIESNKAFYY-NGKFSKEKYLALLKANNINPKDYEDS 157

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS---VDYIVLNNRHVPAIADPSNA 211
               L    +       ++ S+      K F+ +N S   +D++  +     +     + 
Sbjct: 158 LKTALYIDKLKKRLFKDVKVSD---KDVKSFFDKNYSKINLDFVSFDISSFKSKVKVDDE 214

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
            L ++++K+K +YR P   +  YI+  +   +KKI+++++E +A Y  +K+ YF   +R 
Sbjct: 215 KLNKFYQKHKSDYRIPTMVKFEYIVVPLSYVKKKIKVTDNETEAFYNAHKD-YFKVPLRI 273

Query: 272 -VEQLVFPNQ---------KEADEAFQSLKKGKKFIQLAEEQGKSLSDI-------SLGS 314
            V  ++  ++         K+AD+ ++ L+  K  I   E   K  SD         LG 
Sbjct: 274 KVAHILISSKDNQTDSKLRKKADDVYKLLEDKK--ISFKEAAKKYSSDDYTRNVGGELGY 331

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
            +K+ + D    ++I  L K+G+ +      FGY IA V +IK  F   F+ VK  I + 
Sbjct: 332 VTKDMVID-EFWNNIIKL-KRGEISKPFKTKFGYHIALVEDIKKPFVRPFKSVKDQIKDY 389

Query: 375 MRITKASE 382
           ++  KA +
Sbjct: 390 LKTNKAKK 397


>gi|187478461|ref|YP_786485.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N]
 gi|115423047|emb|CAJ49578.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N]
          Length = 648

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 176/407 (43%), Gaps = 19/407 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IR   R W+  I LV++   F I G+      V+    + ++G Q +    F  + 
Sbjct: 1   MFEFIRT-HRRWMQFILLVLVVPSFAIVGVQGYSSFVNTEVELANIGGQGITQPQFDAAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L    Q++G   +     +  L +++L+ L+    L     D         +   IA
Sbjct: 60  RNQLEQFRQRMGSQFDPAVIDTPALREQLLNQLIDQRLLLMVAADNRFSVSDETLRNTIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     D +FS + +   LA +G++   + +   + L+   V+       R    +++
Sbjct: 120 AIPQVQ-DDGRFSPERYRQVLAAQGLSPTSFENGLRRDLAVARVLEPIGLSARVPQEVVN 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             ++   + R++           +  + S   +  W++  K++ R PE  +  Y++ D  
Sbjct: 179 NVEQALTQKRTIQLRSFLAADYRSKVNVSPQDIQAWYDANKESLRIPEQVQAQYLVLDEA 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEA-DEA--------FQS 289
              + +++ ++++ + YE+NK ++ +PE R    ++   P   EA D+A         ++
Sbjct: 239 AATQGVQVKDEDIASYYEQNKNRFGTPEQRRASHILIEAPASGEARDKARAKAEAIAREA 298

Query: 290 LKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
                 F +LA    ++ G +     LG  +   +P  S+  +I  L K G  + V+   
Sbjct: 299 AANPASFAELAKKDSQDAGSAARGGDLGWIAANSVPP-SVQQAIDGLPKDG-VSGVVESP 356

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           FG+ I  V++IKP+      EVK+ I N++R   AS +  E   +L+
Sbjct: 357 FGFHIIKVTDIKPAQIKPLAEVKEQITNEIRKQLASARFAEMATKLQ 403


>gi|299531702|ref|ZP_07045107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
 gi|298720418|gb|EFI61370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
          Length = 632

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 174/417 (41%), Gaps = 47/417 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M E IRK S+  +  I L +L +P F+  G++   F+ S S TV  V    +    + N+
Sbjct: 1   MFESIRKHSKFVM--ILLFLLIIPSFIFVGVNQNYFTES-SQTVARVDGHDITQQDWDNA 57

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFIEDIGLEADHG----- 113
            + E   +           RA++  +D K+LD+  +  ATL++ + D  L A        
Sbjct: 58  HRAESDRL-----------RAQNPTMDAKLLDSPEARYATLEKLVRDRVLAAAAAKMHLT 106

Query: 114 -------RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
                  R   EI         D     + + + +  +G+  + +  +  + L+   V+G
Sbjct: 107 TPDAQLVRTLREIPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLG 166

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
                   +   L QA    ++ R +     +         P+ A L  ++E + + ++ 
Sbjct: 167 SVSSTSFTTAAQLQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYEAHTNQFKQ 226

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           PE   + Y+  D+   ++ I +S D+L+  Y++N  +   PE R    ++    ++   A
Sbjct: 227 PEAATVEYVQLDLAAVQQGIVLSEDDLRTYYKENAARLAGPEERRASHILINAARDLPAA 286

Query: 287 -------------FQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSI 329
                         Q  K  K F Q+A    ++ G + +   LG F +E +      +++
Sbjct: 287 EREKAKAKAEQLLAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGREAMVK-PFEEAV 345

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           F + K+GD + V+   FG+ I  ++ IK     SF+E++  +   ++  +A  K  E
Sbjct: 346 FKM-KQGDISDVVESDFGFHIIELTGIKQPKVPSFEEMRPKLEADLKQQQAQRKFAE 401


>gi|91793843|ref|YP_563494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
 gi|91715845|gb|ABE55771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
          Length = 625

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 176/409 (43%), Gaps = 42/409 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFI 57
           MLE IR+ S+  VAK  LV++   F   G+S  L    G+ST   V  V   +V  S   
Sbjct: 1   MLEKIREGSQGVVAKGILVLVIFSFAFAGVSSYL----GTSTDLPVAIVNGDEVSTSELE 56

Query: 58  NSWKQELGMISQKIGFVVNSERARSV---GLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +++ E   I Q++G +  +  A      G+ + +L+ LV    +DQ    +GL     +
Sbjct: 57  QAFQNERSRIEQQLGDMFETLAADDTYMAGIKQSVLEKLVGDKLIDQAAFALGLRVSDEQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   I   P F   D  F +  + + L + G     + +     ++R  ++   VG    
Sbjct: 117 IKQAIVSEPAFQ-TDGVFDNSRYQAVLRQLGYQAVSFKNMMRVDMTRRQLLSALVG---- 171

Query: 175 SNLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
           S   LD    Q      + R + Y+ + +    A    ++     +++  +  Y +PE  
Sbjct: 172 SEFALDGEAKQLAEVQGQTRDIRYLTVESNQFLADNSVTDEEAQAYYDANQSQYLSPEKV 231

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-------- 282
            + Y+  +V E  K I  S +E++A Y++++++Y + E R    ++     +        
Sbjct: 232 SLEYLELNVAELAKDITTSPEEVKAYYDEHQKQYQTAEKRLAAHILINKSDDDAADEAKA 291

Query: 283 --------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
                   A E+F++L K     + + EQG  L     G  +  +       +++FSL +
Sbjct: 292 AAILAKLTAGESFEALAKTDSEDKFSGEQGGKLDWFEPGVMAPAF------DEALFSL-E 344

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           KG  + ++   FGY I  + +++      F +V+  I  Q++  KA +K
Sbjct: 345 KGAHSGLVSTEFGYHIIKLLDVQAGQLAPFADVEAKIVAQIQEKKALDK 393


>gi|298529972|ref|ZP_07017374.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509346|gb|EFI33250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 628

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 123/658 (18%), Positives = 278/658 (42%), Gaps = 78/658 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+I+R+ +++W+ K+   V+ + F+ WG+    F+     T+  +  + +    F  ++
Sbjct: 1   MLDIMRRNAQSWIVKVLFGVIVIVFVFWGVGS--FTEDDRETLAVINGEPISIQEFARAY 58

Query: 61  KQEL-GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +     M  Q  G  ++ E  RS+ L +++ + +V+   L Q    +GL     ++  EI
Sbjct: 59  ESTAHSMREQNPG--LSREDMRSMQLREQVFNQMVNSKLLVQKASQLGLSVSREQLQQEI 116

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEY---IDHYTKMLSRTDVVGMFVGGMRPSN 176
              P F  ++N+F    +   L    +   ++     H   M    + V +      P+ 
Sbjct: 117 TSLPAFFDEENRFDPQRYEQVLRSHRLTPSQFERDFRHNLLMEKMEEYVSL------PAK 170

Query: 177 LLLDQAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               + + F+   RS   +DY +            +   + ++++  +D +  PE  RI+
Sbjct: 171 PNEHEVQEFFNYVRSQAKIDYKLFEADEFHDKVSITEEQIKEYYQDNQDRFMEPEKIRIA 230

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ----- 288
           ++            +S++E++A ++ ++ ++  PE      ++   +++A E  Q     
Sbjct: 231 HLELSPDALAGAQRVSSEEVEAYFQSHQSEFEQPEEVKARHILVEVEEDAPELEQEQARE 290

Query: 289 -------SLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDF 338
                   L+ G+ F +LA E  +  S      LG F +  + +    ++ F L   G+ 
Sbjct: 291 RIEQILAELEMGQSFEELAREHSQCPSAAEGGDLGRFGRGEMVE-PFEEAAFDLT-PGEV 348

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
           +  +   FG+ +  V     + +   +EV+ +I  ++   KA++++ +    + E +  G
Sbjct: 349 SSPVQTRFGWHLIKVEEYVEAASPDLEEVEDEIRRKIGREKAADQIGDYADDVLEIVVAG 408

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            S+ E +     + ++L   D+  ++ +G E   +P   + L R+F   +    +  + L
Sbjct: 409 GSLKEAA---DSLGLELKETDYFSRE-QGPEELELPG--EALDRLFNLMEGEVTESPIML 462

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDW---KTVKTAEEVSSKANQLVLEYSKEGK 515
            D  Y++ +      AR  +LE+V  ++ ++    K+++ AE+ +      +L+ + E +
Sbjct: 463 -DNGYLYAEKTGVREARSLELEKVEDEIVEELTRQKSMEMAEKAAGDKLDKILDEAVEPE 521

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG------- 568
                       L+T+   +R        G+  I  +   P    + F  + G       
Sbjct: 522 EL---------DLVTSEPFDRQ-------GF--IPGLGMNPQLAEQAFVQDTGSWLPEVK 563

Query: 569 ---LSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                Y+V +V N  + P      QEKD+++    QM  + + +S I  L+S+  + +
Sbjct: 564 STDAGYIVARV-NEHIEPDMEQFEQEKDQWMQSYAQMQRQQVFNSYITMLRSRADINM 620


>gi|53805225|ref|YP_113052.1| peptidyl-prolyl cis-trans isomerse D [Methylococcus capsulatus str.
           Bath]
 gi|53758986|gb|AAU93277.1| peptidyl-prolyl cis-trans isomerse D [Methylococcus capsulatus str.
           Bath]
          Length = 605

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 184/407 (45%), Gaps = 56/407 (13%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV-V 75
            L+++ +PF  WG+++  F     + V  VG +       + +++Q+L  +   +G   V
Sbjct: 1   MLILVGIPFAFWGINN-YFDSGKEAPVAVVGDRDFFERDVVQAYQQDLANL---VGLGDV 56

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
           + +  +   L++ + D L+S A   +     GL      V   I   P F   D KF  D
Sbjct: 57  DEKHLKRQALERLVRDELISQAAAGE-----GLAVPDSAVRAFIQTLPYFQ-TDGKFDKD 110

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF----ENRS 191
            +   L+ +G +   +++   + L    ++  F  G+  +  +  Q    +F    + R 
Sbjct: 111 KYNVMLSAQGTSSPVFVEQVKRAL----LMEQFQRGITDTAFVTRQQVEAFFRLKNQERE 166

Query: 192 VDYIVLNNRHVP-AIADP--SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
           ++++      VP A AD   S + + +++  + D +++PE   ++Y+L  + +  K+++ 
Sbjct: 167 IEFVT-----VPLAKADEEVSESSIDEYYRSHPDEFQSPETVSVNYLLLSLDDVAKEVKP 221

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---VFPNQKEADEAF---------QSLKKGKKF 296
           + +EL+  YE+ K  + + E R V  +   V P + E DEA          + L KG+ F
Sbjct: 222 TEEELRNFYEEQKAGFTTEERRKVSHILVTVDPAKPE-DEAAALAKIRQIRERLLKGEDF 280

Query: 297 IQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            +LA+         E+G  L  ++ G       P+   A    S   +G+ +  +  SFG
Sbjct: 281 AKLAKETSDDRVSAEKGGDLGVVTKGGME----PNFEKAALALS---QGEVSEPVRTSFG 333

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           Y +  V+ + P+ T  +++VK ++A   R   A  +  +  ++L EF
Sbjct: 334 YHLIKVTELTPATTKPYEQVKDEVAAGFRRNAAENRFYDLGQKLTEF 380


>gi|114799881|ref|YP_760495.1| peptidylprolyl cis-trans isomerase-like protein [Hyphomonas
           neptunium ATCC 15444]
 gi|114740055|gb|ABI78180.1| peptidylprolyl cis-trans isomerase, homolog [Hyphomonas neptunium
           ATCC 15444]
          Length = 637

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 127/642 (19%), Positives = 275/642 (42%), Gaps = 65/642 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV--SG-SSTVVSVGRQKVPFSSFI 57
           ML +++K +R+ V K+ L+++ V    WG+ DA+ +   SG  + VVS G + +  +   
Sbjct: 1   MLALMKKMTRSPVGKLVLMIVIVGMAFWGV-DAIVNQMRSGLGANVVSAGSRGLDPADL- 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV----SGATLDQFIEDIGLEADHG 113
             ++ E   + + I        ++S  L++ ++D +V    +  T   + E IG+     
Sbjct: 59  -DFRVE--TVLRNINATAERPLSKSEALEQGLIDQIVEVEKARITRLGYGESIGISPSPE 115

Query: 114 RVWGEIARSPLFHGK-DNKFSHDVFVSRLAREGINEKEY-----IDHYTKMLS---RTDV 164
            V  E+   P F      +    +F  R+++ G++  ++      D   + LS   R+ V
Sbjct: 116 AVVEEMNSIPAFQNPLTGELDPAMFRDRISQLGMSPAQFERQLQDDILIRALSQAGRSAV 175

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
            G          ++ +    +  E R V +   +    PA   P++A +  +++++ +  
Sbjct: 176 YG--------PQVIANIQANYLGETREVAWFFFDASDAPAPEVPTDAEIKAYYDEHLERL 227

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEA 283
           + PE + +  +     +   K+E+++ E+   YE  K E++ +P+ RT  +L+FP +  A
Sbjct: 228 KQPERRALDILRMSTDDFTGKVEVTDQEVATVYEATKSERFAAPDQRTYAELLFPTRDAA 287

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD--FTPV 341
             AF  L  G     +        + + + +   E I D +L D++F   ++    + P 
Sbjct: 288 RTAFGLLAGGADPNSV-----TGANSVQMRTARAEDISDQALQDAMFGPGRQSGAMYGPR 342

Query: 342 -IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
            + G   +++A + +++P      +EV ++I   +   +A        + L+E LA G  
Sbjct: 343 EVDGQ--WLVARLISVQPGAVKPLEEVAEEIRLGLARERAQLLFSAALETLDEALAAGND 400

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKE---VAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
           + +++    +  I +  VD  G   +G +   ++ +P      FR+   ++ +     VA
Sbjct: 401 LSQVAEDIGVPIISIAPVDQNGITEQGNQFTILSEVPEALPQAFRL--PENEIGSRFDVA 458

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
               S + V  +  +PA   +L+ +   V     + +TA    +    L  E  + G   
Sbjct: 459 ---SSVVLVAPRRIVPAATPELDAIKDRVSAMIVSERTANAAEAAVEALT-ERVRAGSVT 514

Query: 518 RDIGKNLGASLLTTNQINRMD-----NENKFFGYDG--ISQVFSGPVEMVKCFPIENGLS 570
            D      A+  +  Q++R+      +  +  G  G  +   F+ P   V   P  +G  
Sbjct: 515 LD-----AAAAESGAQVDRLPEPVSRSNAQAMGVPGPLMQATFNNPAGSVISLPTGDGSV 569

Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
           + + K+ +  V P     + I+ +    + D+ +S+ A L++
Sbjct: 570 FAILKILS--VSP--PTPEMIASMGTAASADVTESLTADLEA 607


>gi|300715595|ref|YP_003740398.1| peptidyl-prolyl cis-trans isomerase D [Erwinia billingiae Eb661]
 gi|299061431|emb|CAX58543.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia billingiae Eb661]
          Length = 623

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 184/410 (44%), Gaps = 38/410 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV------VSVGRQKVPFS 54
           M++ +R AS   V KI L ++ + F++ G+ + L   +G          +S  + +  FS
Sbjct: 1   MMDNLRAASNHVVLKIILALIILSFVLTGVGNYLIGGNGDYAAKVNGQEISRAQLENAFS 60

Query: 55  SFINSWKQELG-MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
           +  +  +Q+LG   SQ  G     ++ R   L + + ++L++G     + +D+GL     
Sbjct: 61  NERSRQQQQLGEQFSQLAGNPAYIQQIRQQALSQLVDESLLTG-----YAKDLGLAISDD 115

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
           ++   I     F   + KF +  ++  + + G    +Y +   K L+   ++        
Sbjct: 116 QIKQAIFNQSAFQ-TNGKFDNTKYLGLINQMGFTADQYAEALRKQLTTQQLIAAVTN--- 171

Query: 174 PSNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
            ++ +L    D       + R V    +N   + A    S   +  ++E+ K+N+ +PE 
Sbjct: 172 -TDFMLTGETDALAALVSQERLVREATINVAALAAKQTVSAEEIKNYYEQNKNNFMSPEQ 230

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
            R+SYI  D    ++    S  ++Q+ Y++++  Y  P+      +    + EA  A  +
Sbjct: 231 FRVSYIKLDAASMQETA--SEADIQSWYDQHQADYTQPQRSRYSIIQTKTEAEAQSALDA 288

Query: 290 LKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           +KKG  F  LA+E  KS   IS      +G    +  PD  L  +   L +KG  + VI 
Sbjct: 289 MKKGGDFAALAKE--KSADPISARNGGDMGWLEPDTTPD-ELKSA--GLKEKGQLSGVIK 343

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            S G+++A +++++P        V  DIA +++     EK  + Y +L++
Sbjct: 344 SSVGFIVARLTDVQPQQIKPLAAVHDDIAAKVK----QEKAIDAYYKLQQ 389


>gi|293391759|ref|ZP_06636093.1| SurA protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952293|gb|EFE02412.1| SurA protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 615

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/386 (22%), Positives = 167/386 (43%), Gaps = 24/386 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +  AS  W +K     + V F+I  ++  L+S   SS    V  +++   +F N +
Sbjct: 2   VMEKLHGASNNWASKFLFGFITVTFVISSMAGYLYSRIDSSAA-KVNGEEISQQAFQNQY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                + SQ +             L +++L +L+    L Q+++D+ L     R+  EI 
Sbjct: 61  ----NIASQNLSPQEADSPTVVANLKRQVLSSLIDQELLRQYVKDLKLGVSDERIKQEIV 116

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P F   + KF + ++   L   GI+ + Y  +  + L R + +   +G    +  +  
Sbjct: 117 TTPSFQN-NGKFDNVLYQQLLQSNGISAETYAGYVREAL-RLEQLQSGLGITAFTVPVQQ 174

Query: 181 QA-KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           +A  + +F+ R V    L+     A    S   +  +++ +K ++  PE  ++ Y+    
Sbjct: 175 EALAKLFFQRRDVRLATLSLADEIAKQTVSAEEIQAYYDAHKADFTLPELVKVQYLDLSG 234

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
              EK I IS+ E+   Y+ NK ++ +   + +  +    +++A + +Q L+ G +F  L
Sbjct: 235 ANMEKNINISDVEIAQYYQDNKSQFMTQGQQRLAHIEVKTEQQAQDLYQQLQNGAEFSTL 294

Query: 300 AE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           A+         E+G  LS +S G F K +    +  D        G F+  +     Y I
Sbjct: 295 AKNHSIDPISAEKGGDLSWVSAGEFPKVFEDAANALDV-------GKFSQPVKLDNSYHI 347

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMR 376
             V   K S  +  + V+  I  Q+R
Sbjct: 348 ILVEGRKDSAVLPLERVRPQIVAQIR 373


>gi|296107448|ref|YP_003619148.1| peptidyl-prolyl cis-trans isomerase D [Legionella pneumophila
           2300/99 Alcoy]
 gi|295649349|gb|ADG25196.1| peptidyl-prolyl cis-trans isomerase D [Legionella pneumophila
           2300/99 Alcoy]
          Length = 624

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 112/519 (21%), Positives = 226/519 (43%), Gaps = 57/519 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+     S   S   V V  + +   +F  ++
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60

Query: 61  K-----QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +     Q+L  ++           A    L  ++L+ +++     Q     G E    + 
Sbjct: 61  RRTRAQQDLPQMT----------AADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQA 110

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I + P F  +D  FS   +   L+      + + +   + +        F+G    S
Sbjct: 111 NAAIVQIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGT---S 166

Query: 176 NLLLDQAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             L D+ KRF   Y + R  DY+ + +      A  S   +  ++ ++   +   E   +
Sbjct: 167 FALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTL 226

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN----------Q 280
            Y+L  +H+ + +I+IS DE+++ YE+NK  Y +P    V  ++F  P           +
Sbjct: 227 DYVLLTMHDIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIK 286

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF-----SLAKK 335
           ++ADE +  LKK  +     ++   S SD  L   +K  +P ++   + +     +L + 
Sbjct: 287 QKADEVYSDLKKHPEQF---DKYVASKSDDKLSIANKGILPWITGGQNEYGRVLSNLTRP 343

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G+ +  +   +GY I  +   KP  T S QEV+  I +Q+    A  K  +  ++L + L
Sbjct: 344 GEISTPVQTKYGYEIFKLIAYKPVTTKSLQEVENIIKDQLTSDMAQAKYAQVLEQLTD-L 402

Query: 396 ALGT--SMDEI--SRREKIVSIDLPLVDFAGKD--VKGKEVAAIPYKEQLLFRVFGKDDP 449
           +  T  S+D +  S + K+   + P     GK    K K+V    +   +L  +    +P
Sbjct: 403 SYQTPDSLDPVLDSLKLKMQHTE-PFSRDGGKQPITKNKQVIHAAFSTDVL-ELGNNSEP 460

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
           +  D      + S + +++K+ IP+R++ L+EV   +KK
Sbjct: 461 IQID------NDSVIVLRVKKHIPSREQTLDEVRDQIKK 493


>gi|103486661|ref|YP_616222.1| hypothetical protein Sala_1173 [Sphingopyxis alaskensis RB2256]
 gi|98976738|gb|ABF52889.1| hypothetical protein Sala_1173 [Sphingopyxis alaskensis RB2256]
          Length = 673

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 91/427 (21%), Positives = 174/427 (40%), Gaps = 15/427 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--------VVSVGRQKVP 52
           M+  IR    + + K FL + FV  ++ G++ AL  V+G+ST        V  VG +++ 
Sbjct: 26  MITAIRAMFSSTIGK-FLALAFV--VLVGVAFALSDVTGNSTFGGIGGANVAKVGGEEIG 82

Query: 53  FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
                +  +Q      +    +  +    + GLD+ +L  L+ G   DQ+  ++G     
Sbjct: 83  VGELRDRVRQAYDQARRNQPGLTMAAFVENGGLDQ-VLGQLIDGLAFDQYATELGFGVSK 141

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             + G IA  P F G   KF   VF + L + GI+E +      + +    +        
Sbjct: 142 RLIDGRIADLPAFAGVSGKFDQTVFENFLRQNGISEAQLRRDLRQQILLEQLAAPIAQMP 201

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
           R +  L +       E R      +         DP +A L ++  +    +  PE + I
Sbjct: 202 RIAPALAEPYAALLLEQRRGQATFIPASAFAPKGDPGDAALRRFLTQNAAKFTVPERRVI 261

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
            Y +FD         +++ E+   Y+ N  +Y + E R   Q++ P+Q  A+     ++ 
Sbjct: 262 QYAMFD-RASVPVPAVTDAEIARVYKDNAAQYAATETRRFAQVILPDQAAANRLAAKVRS 320

Query: 293 GKKFIQLAEEQGKSLSDIS-LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           G      A E G S S    LG  +       +        AK+G+    +    G+ + 
Sbjct: 321 GASLASAAAEAGLSASTTGDLGQSAYAAT-TSAAVARAAFAAKRGEVVGPLQTGLGWTVV 379

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            V ++      S  +   +I  ++   KA+E + + Y  +++ +  G S++EI+   K+ 
Sbjct: 380 RVEDVTTRPARSLADASAEIRAELASNKANEAIVDYYNAIQDAVNSGASIEEIATDRKLQ 439

Query: 412 SIDLPLV 418
            ++ P +
Sbjct: 440 IVETPAI 446


>gi|323526043|ref|YP_004228196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
 gi|323383045|gb|ADX55136.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
          Length = 646

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/409 (21%), Positives = 167/409 (40%), Gaps = 25/409 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +    L+++ VP L + G+         S+ V SV   K+  + + N+
Sbjct: 1   MLDFFRNHKRLMM--FMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDNA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q+L    Q +G   + +   +     ++LD L+    L    + + L A    V   +
Sbjct: 59  MRQQLDRARQMLGAQFDIKAFDTPERRSEMLDGLIEQRVLADETQRLHLTASDDAVRRVL 118

Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D     D +   LA +G+   +Y +     ++   +     G    S 
Sbjct: 119 LNDPVISSLKKPDGSIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L         + R V  I  + R   A   P++A L  +++ +++++  P    I Y++
Sbjct: 179 TLAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------D 284
                    ++ S+ +L+  Y+ N   Y +        ++    K+A            +
Sbjct: 239 MSPATLAASVQPSDADLKKYYDDNIAHYRTEGQVRASHILIAAPKDASPADKAKAKQKAE 298

Query: 285 EAFQSLKKGK-KFIQLAEEQ----GKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDF 338
           E    +K    +F Q+A++     G +     LG F +  I    +  D++F+L KK + 
Sbjct: 299 ELLAQVKAHPDQFAQIAQQNSQDPGSAAKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEV 357

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           + ++   FGY I  V+++KP+ T  F EVK  IA  ++   AS+   +D
Sbjct: 358 SGIVQTDFGYHIVKVTDVKPAVTRPFDEVKDQIARDLKTQLASKAFSDD 406


>gi|52842082|ref|YP_095881.1| hypothetical protein lpg1855 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629193|gb|AAU27934.1| peptidyl prolyl cis-trans isomerase D [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 624

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 115/519 (22%), Positives = 225/519 (43%), Gaps = 57/519 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+     S   S   V V  + +   +F  ++
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDRPITMQAFETNY 60

Query: 61  K-----QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +     Q+L  ++           A    L  ++L+ +++     Q     G E    + 
Sbjct: 61  RRTRAQQDLPQMT----------AADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQA 110

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I + P F  +D  FS   +   L+      + + +   + +        F+G    S
Sbjct: 111 NAAIVQIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGT---S 166

Query: 176 NLLLDQAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             L D+ KRF   Y + R  DY+ + +      A  S   +  ++ ++   +   E   +
Sbjct: 167 FALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTLEQVTL 226

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN----------Q 280
            Y+L  +H+ + +I+IS DE+++ YE+NK  Y +P    V  ++F  P           +
Sbjct: 227 DYVLLSMHDIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIK 286

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA----DSIFS-LAKK 335
           ++ADE +  LKK  +     ++   S SD  L   +K  +P ++      D + S L + 
Sbjct: 287 QKADEVYSDLKKHPEQF---DKYVASKSDDKLSIANKGILPWITGGQNEYDRVLSNLTRP 343

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G  +  +   +GY I  +   KP  T S QEV+  I +Q+    A  K  +  ++L + L
Sbjct: 344 GQISIPVQTKYGYEIFKLIAYKPVTTKSLQEVENIIMDQLTSDMAQAKYAQVLEQLTD-L 402

Query: 396 ALGT--SMDEI--SRREKIVSIDLPLVDFAGKD--VKGKEVAAIPYKEQLLFRVFGKDDP 449
           +  T  S+D +  S + KI   + P     GK    K K+V    +   +L  +    +P
Sbjct: 403 SYQTPDSLDPVLDSLKLKIQHTE-PFSRDGGKQPITKNKQVIHAAFSTDVL-ELGNNSEP 460

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
           +  D      + S + +++K+ IP+R++ L+EV   +KK
Sbjct: 461 IQID------NDSVIVLRVKKHIPSREQTLDEVRDQIKK 493


>gi|237807859|ref|YP_002892299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis
           DSM 9187]
 gi|237500120|gb|ACQ92713.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis
           DSM 9187]
          Length = 638

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 112/550 (20%), Positives = 236/550 (42%), Gaps = 39/550 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           +++ +R  ++  VAKI   ++ + F + G+   + S + +   V V  + +   +   S+
Sbjct: 2   LMDKLRDGAQGRVAKIIFWLIILSFALAGVGSYINSPASNDPAV-VDDEVISAQTLEQSY 60

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           + E   +  + G      + N +      L K +L+ LV+ + L+    + G+     +V
Sbjct: 61  QNERARMQAQYGEAAAQLLDNPQYL--AQLKKSVLERLVNQSLLNNKALNAGVRLSDEQV 118

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF-VGGMRP 174
              I + P F   DNKF +  F + L+R G   + + +       R D++  + + G+  
Sbjct: 119 KDVIRQMPEFQT-DNKFDNQKFTTALSRVGYTPESFANSM-----RQDLIRQYWLDGILT 172

Query: 175 SNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
           +   L     +    Y + R V  I +           ++  +  +++ + + +   E  
Sbjct: 173 TEFALPAEVSRLDALYQQKRDVKMITIPVETFSKQITVTDQDVDAFYKAHSNEFMQSEQV 232

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------QKEAD 284
           +++YI+ +  +  K I+ ++ EL+A Y+++ E +  P  R V  ++  +      QK+AD
Sbjct: 233 KLNYIVLNSADLAKTIQPADSELKAYYQQHAELFTEPARRKVSHILITDKDDNAAQKKAD 292

Query: 285 EAFQSLKKGKKFIQLAE-EQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTPV 341
           E    LK G  F QLA+ E   +LS    G     ++ + D +   + F+L +K + + V
Sbjct: 293 ELLAKLKSGTDFTQLAKTESADTLSARQGGELDWFEKGVMDPAFETAAFALNQKNELSAV 352

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTS 400
           +  +FGY I  + + + +    + +V   +  +    KA E   +  ++L +       S
Sbjct: 353 VKSAFGYHIIKLLDKQDAIETPYDKVVTIVRQKFVDEKAKELFADQQQKLSDIGFENPDS 412

Query: 401 MDEISRREKIVSIDLPL--VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
           +D ++       + LPL   DF        E+     KEQ        ++  +    +++
Sbjct: 413 LDAVAE-----GLKLPLQKTDFIAAQQLPAEINVPAVKEQAFAEKLRDEN--TNSEVISV 465

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
            D   + + + +  P+  + L EV   V    +  K AE+  ++A  L LE  K G++  
Sbjct: 466 SDTVAVMLHVIDYKPSSAKPLSEVKDLVVAKLRATKAAEKAHTEAMAL-LEKVKAGQSID 524

Query: 519 DIGKNLGASL 528
           +    L A +
Sbjct: 525 EQLTKLNAKV 534


>gi|302878839|ref|YP_003847403.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
           capsiferriformans ES-2]
 gi|302581628|gb|ADL55639.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
           capsiferriformans ES-2]
          Length = 631

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 169/390 (43%), Gaps = 23/390 (5%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           +I L+++ +PF  +G+ D+      +    +V  +K+    F  + +Q+   + Q +G  
Sbjct: 13  QIVLLLIILPFAFFGV-DSYRHSGDTDAPATVNGEKITKQEFDTAMRQQQDKMRQVLGEN 71

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN-KFS 133
            +        + + ILDNLV+   L +  +  GL     ++   I     F  KD  KF 
Sbjct: 72  FDPALFEKAEMKRAILDNLVAQRLLLERAKAAGLTVTDEQIAQVIGGIDAF--KDGGKFD 129

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
              + S LA + +    +       L+   +   +      SN + D       + R V 
Sbjct: 130 KARYTSALAAQNMTPAIFEARVKDELTGQQMRDAYTQNGYVSNAVADNIIAINEQQRIVS 189

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
              + +R   A A   +A +  +F+  +  ++ PE  ++ Y+ F + +   K +I  +E+
Sbjct: 190 IAPILSRSFMAQAKVDDAAIKTYFDANQKEFQVPEQVKVEYVKFSIADLIAKADIKAEEV 249

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-------------KFIQLA 300
           +  Y++++ ++ S E R    ++      A +A Q   K K             KF  LA
Sbjct: 250 RQYYDEHQSEFASAEQRQASHILLVVAATAPQAEQDAVKAKAEKLLAQVKQEPGKFADLA 309

Query: 301 ----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
               ++ G +++   LG F +  +      +++FSL K G+ + ++   FGY I  ++ I
Sbjct: 310 RQNSQDPGSAVNGGDLGMFGRGMMVK-PFDEAVFSL-KAGEISGLVKSDFGYHIIKLTAI 367

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           K S    F EV+ +IA ++R  KA++   E
Sbjct: 368 KASRATPFNEVQAEIAGKLRQQKAADSFAE 397


>gi|78485440|ref|YP_391365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
           crunogena XCL-2]
 gi|78363726|gb|ABB41691.1| peptidyl-prolyl cis-trans isomerase D [Thiomicrospira crunogena
           XCL-2]
          Length = 638

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/405 (19%), Positives = 180/405 (44%), Gaps = 20/405 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++ W+A + + ++ + F ++G+ D          V  V  + V  + F+  +
Sbjct: 1   MLQSIRNHAQGWIAWVIVGLIILTFALFGI-DQYAKGDKIIVVAEVNGEDVTANEFLTLY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            ++   +  + G + + +  +   L  +++D L+    + Q+ +   +   + ++   I 
Sbjct: 60  SRQQARLKNQFGEMYD-QVVKDQQLRDEVMDALIESEVVRQWADSHNMMISNQQLSATIE 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            + +F  KD +F   ++   L + G+N   +     + L       + +     ++  L 
Sbjct: 119 SAEVFQ-KDGQFDQQLYQDILLQNGLNVARFEYEQRQFLIENQNRQLTMASAITNDTQLA 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q     F+ R V+Y+ ++ R     A  ++  +  ++ K+K+++  PE   +SY+L    
Sbjct: 178 QLAALQFQQRKVNYLRVDQRPFMQEAQITDDEIQTYYNKHKEDFITPEQVVLSYVLLSKK 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSLK 291
           +   K+ + +  L+  Y+ NK+++  PE R    ++            QK   E    L 
Sbjct: 238 DLADKVSVDDAILKRFYQDNKDQFTQPEKRQASHILVKVDAESQDAEAQKTIKEIQAKLA 297

Query: 292 KGKKFIQLA----EEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            G+ F  LA    ++ G +     LG F +   +P  +   ++FS+ K  + +  +   F
Sbjct: 298 DGEDFAALAKTYSDDPGSANMGGDLGLFQQGMMVP--AFDKAVFSM-KLNEISDPVKTEF 354

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           GY +  ++ I+P    +F EVK ++    R  +A ++  ++ ++L
Sbjct: 355 GYHLIKLTKIQPKKMQAFNEVKAEVETLYRRQQADKQYFDELEQL 399


>gi|320354707|ref|YP_004196046.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123209|gb|ADW18755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus
           propionicus DSM 2032]
          Length = 626

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 178/396 (44%), Gaps = 31/396 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML IIRK +++ V +  +V++ + F+ WG+   L      + V  V  +++ +  F  ++
Sbjct: 1   MLNIIRKNAQSIVVQSIVVIIAIVFIFWGVGTNL--NDNPNAVAVVNGKEISYRDFQQNY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ +    Q+ G  +  +   S+G+  ++L+ L+    L Q  E +G+         +I 
Sbjct: 59  ERAIEGYKQQFGGQLPEKFVESLGVKDQVLNQLIQSELLRQGAEKMGMTISKEATQRKIQ 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEY---IDHYTKMLSRTDVVGMFVGGMRPSNL 177
              +F  ++ +F  D + + LA+  ++   +   I +   M    + +G F      S  
Sbjct: 119 DLEVFRDENGRFDLDRYKTVLAQNRLSPTSFEAGIGNDLLMNRAVESLGAFA---TVSAA 175

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            LD    F  +   + Y  + +          +A L  W+E+ K  Y+ P   +++Y+ F
Sbjct: 176 ELDNWVEFLDQEVKLAYTTVRSSAYEPQVKVDDASLQSWYEQTKQQYKTPPQSKLAYLSF 235

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD------------- 284
              +  K + ++++ +Q  Y+++ E Y +PE R    ++F   K AD             
Sbjct: 236 PFADDLKAVAVNDEAVQRYYQEHAELYATPEQRRARHILF---KIADGDTAETKAAKKAA 292

Query: 285 --EAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
             +    ++ G  F  LA++  +  S      LG FS+  + +     S+FSL + G+ +
Sbjct: 293 AEKVLAQIRGGGDFALLAKQFSEDTSKEKGGDLGFFSRGQMVE-PFERSVFSL-RTGEIS 350

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            V+   +GY +  +  IKP+ T S +EV+  I  ++
Sbjct: 351 GVVETPYGYHLVKLEEIKPATTRSLEEVRASIRAEL 386


>gi|261855012|ref|YP_003262295.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
           neapolitanus c2]
 gi|261835481|gb|ACX95248.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
           neapolitanus c2]
          Length = 645

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 135/301 (44%), Gaps = 11/301 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  +R+  + W+A   + ++ +PF++WG+ +  FS   +  V  V    +   +F  + 
Sbjct: 1   MLMDLRERIQGWIAYAIIGLISIPFVLWGVGE-YFSGGKNQPVAEVDGLPISQQAFEQAV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            Q+   I QK+G  V++E  +S+ LD+++LD +++   L  F++  G  A    V   I 
Sbjct: 60  SQQRQAIIQKLGGSVSAEMLQSLNLDQQVLDQMINERVLRVFVQKAGFRAPDAVVADLIR 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL-- 178
             P F   D  F    + + +A  G      + ++   L +  V+      +  S ++  
Sbjct: 120 SEPAFK-TDGAFDVKKYEAFVAARGTT----VANFEAGLKQDIVMQTLENAISESTIVTA 174

Query: 179 --LDQAKRFYFENRSVDYIVLNN-RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
             LDQ  +   + R +  + L+  R +  +A P++  +  ++  +K  +  PE  ++ YI
Sbjct: 175 PELDQIVKLRDQTREIGMVRLDRARVIDTVAAPTDGAIEAYYAAHKGEFIRPERVKLRYI 234

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                     +++++ +++  Y    +K  +  +RTV  ++    K AD A     K K 
Sbjct: 235 ELSPKTLAPSVKVTDAQVEQAYANYVKKQEAQVVRTVRHILISVPKNADGAAIEAAKNKA 294

Query: 296 F 296
            
Sbjct: 295 L 295


>gi|294650670|ref|ZP_06728024.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292823461|gb|EFF82310.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 623

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 134/653 (20%), Positives = 256/653 (39%), Gaps = 69/653 (10%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVP---FSSFI 57
           +E  R   + W+ K+ LV+   P  + G+ +  FS    + V  SV  Q +      S I
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGI-EGYFSGGNKADVAKSVNGQDISNKELESAI 59

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++K +   + Q    ++N        + ++ +D LV+ + L Q  E +G+     ++  
Sbjct: 60  KNYKDQYLALVQGDESLLNLS-----AIQERAMDALVARSLLSQQAEKLGISLSDAQLEQ 114

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGM 172
            +A+ P F  ++ +FS  ++ + L   G+  +  I     DH  KM+S + +    V   
Sbjct: 115 MLAQQPSFQ-QNGQFSQQLYENYLRSVGLTNQALISSLRQDHALKMISSSLMDNALV--- 170

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             S   L Q      E R++    +           S   +T ++ K+K+ ++      +
Sbjct: 171 --SKSDLQQLANLQTEQRTLHLASIKLDDYKKGVTASTQEITDYYNKHKNEFKQVASVDV 228

Query: 233 SYILFDVHEKEK-KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
            Y++      E+  + +++ +LQ  Y    EK      R V+ ++    +  D A Q L 
Sbjct: 229 DYVVLSPALLEQANLAVTDADLQQAYAAFVEKQQQSVKREVKHILVTTDERDDAAAQKLI 288

Query: 291 -------KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTPV 341
                  + G  F Q A +  +  S  + G     Y P    AD  +  +  K G  +  
Sbjct: 289 NDVYAKIQSGMTFAQAASQYSEDPSSKNQGGLVSAYAPGAFSADFDNAVNTLKNGQVSKP 348

Query: 342 IHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
           +   +GY I  V    P+  + SF+  K  +  ++  TKA+    +    L E +    S
Sbjct: 349 VKTQYGYHIIEVQ--VPTVNIPSFESEKARLTAEVEKTKAANLFSDTVNNLNEMVVGSDS 406

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG---KDDPLSKDHTVA 457
           ++ +++  K   ++      + K +       I     +  ++F    K+   +    + 
Sbjct: 407 LEVVAQEVKAARVE------SAKAITLATQHPILSDLNVKVKLFSDDVKNGDRNASSNIQ 460

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           L +G  +W+++++   A  + L EV T+VK      K  E+ + KA Q     +K     
Sbjct: 461 LANGDSIWIKVRDYHSAGIKPLSEVTTEVK-----AKVVEQKAYKAAQ-----AKMASIL 510

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-----VFSGPVE------MVKCFPIE 566
            D      A ++  +Q+N  +N   F    G+ +      FS P              + 
Sbjct: 511 ADFKTQPAAQVVAKSQVN-FENAGTFARSHGLKRAIERAAFSIPAPSKEGMWSATTAKLP 569

Query: 567 NGLSYVVFKVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           N L  V     +S V    P +E  +      Q   + +L+   AYLKSQ  +
Sbjct: 570 NELVIVAVSNVDSSVASSLPEKELLELKQLYQQFRGQQVLEDYTAYLKSQADI 622


>gi|319779411|ref|YP_004130324.1| hypothetical protein TEQUI_1261 [Taylorella equigenitalis MCE9]
 gi|317109435|gb|ADU92181.1| hypothetical protein TEQUI_1261 [Taylorella equigenitalis MCE9]
          Length = 644

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 178/400 (44%), Gaps = 26/400 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE  RK S+ WV  I ++++   F+ +G S           +V V ++K+    F  SW
Sbjct: 1   MLEFFRKHSK-WVLFIIIILIVPSFVFFGTSKYSGMSISEKPLVKVNKEKITERQFNKSW 59

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVS-GATLDQFIEDIGLEADHGR 114
            + L  +  ++G       +++   R++ L+K + D L++  A  ++F            
Sbjct: 60  TERLNSLRDQLGNNFKVSEIDTPANRNLWLNKIVDDILITQTANKNKFF------GSDSM 113

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V   IA  P F   D KFS + + + L    I  +EY ++         VV   +     
Sbjct: 114 VRSAIALDPKF-AVDGKFSMENYNAFLTSANITSQEYENYLRANTGINLVVEPLINSTLV 172

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK-YKDNYRAPEYKRIS 233
               L++ K+   + R V   +  N             L  W++K  ++ YR PEY  + 
Sbjct: 173 PLTTLEELKKHVTKTREVQTKIFANEDFINAVSVDEKELEDWYKKNSEEKYRVPEYVNVE 232

Query: 234 YILFDVHEKEKKIEISN-DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291
           Y L +       +   N D L++ YE NK ++ + E R V  +   +++ A   ++ LK 
Sbjct: 233 YFLLNQKAAVDLVPQPNEDALKSYYENNKNRFSTEERRFVRHIQLDSEERAKAIYEELKT 292

Query: 292 ---KGKKFIQLAE--EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
              K ++F+ L++  + G   +   LG   K  IP +   +++F+L K G   PV  G+ 
Sbjct: 293 TPNKFEEFV-LSDSLDAGTKNNKGELGFLKKSDIPGIE--NTVFALDKPGITGPVKLGN- 348

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            + I  V  I+ +   SF+E+K  + N++++  AS+K  E
Sbjct: 349 SFHIFDVVQIEKAKVKSFEELKDTLVNEVKLQIASDKFAE 388


>gi|269102133|ref|ZP_06154830.1| peptidyl-prolyl cis-trans isomerase PpiD [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162031|gb|EEZ40527.1| peptidyl-prolyl cis-trans isomerase PpiD [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 565

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 158/337 (46%), Gaps = 39/337 (11%)

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
           + +L+ +++   + +   ++GL     ++   I   P F   D KF+++ +   L R GI
Sbjct: 24  RSVLERMINDVLIQKRAHELGLRVSDQQIRDAIFAMPEFK-VDGKFNNEQYNQLLRRSGI 82

Query: 147 NEKEYIDHYTKMLSRTDVV-GMFVGGMRPSNLLL----DQAKRFYFENRSVDYIVLNNRH 201
             +++ +       RTD++   F+G +  S+  L    ++ +    + R +  + LN   
Sbjct: 83  TPEQFAESL-----RTDLLRQQFLGAIEGSDFALSGEVNELRMLESQERVIRTLTLN--- 134

Query: 202 VPAIADPSNAVLTQ-----WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
           +      + A +T+     ++E+    +  P   ++SY+     + +  IE+S+   QA 
Sbjct: 135 LADFTKKAEASITEEQEKAFYEQNPQQFTRPAQVKVSYVEITGDKLKDSIEVSD--AQAY 192

Query: 257 YEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLS 308
           Y ++K+K+ +PE R V  ++       ++++A+     LK G  F +LA++      S  
Sbjct: 193 YNEHKDKFSTPEKRQVSHILITGDSAASKEKAEAILAQLKDGANFAELAKKDSDDKFSAK 252

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
           D     + ++ + D +  D+ F+LAK GD + V+  SFGY I  +  I+P+    F +VK
Sbjct: 253 DGGKLEWFEKGVMDPAFEDAAFALAKPGDLSGVVKSSFGYHIILLDGIEPAKAKPFADVK 312

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
            +I   ++  KA           +EF A+ T + E +
Sbjct: 313 AEIIADIKSQKAG----------DEFYAMQTKLAETA 339


>gi|126668935|ref|ZP_01739876.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
 gi|126626598|gb|EAZ97254.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
          Length = 624

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 120/551 (21%), Positives = 240/551 (43%), Gaps = 59/551 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ ++  +AKI + +L +   +WG+   +   SG   V +V  Q +    F+   
Sbjct: 1   MLQDMRENAQGTIAKIIIGLLILSLSVWGMDAIIGGFSGEPEVATVNGQDITEREFLRVV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDK-----KILDNLVSGATLDQFIEDIGLEADHGRV 115
           + E    SQ    +   ER     LD+      +L  L+    L Q  +  GL      +
Sbjct: 61  QLE----SQN--RLSRMERPDPSLLDEDQIRVDVLQALIEEQVLAQDADRQGLALSDADI 114

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV-VGMFVGGMRP 174
              I + P F   D +F+ D FV+ +   G+   E+ D   K      +  G+   G+  
Sbjct: 115 DALITQMPQFQ-VDGQFNRDQFVTTVRNVGMGVGEFRDAMRKQTVVNQIRAGIVASGVVT 173

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV---LTQWFEKYKDNYRAPEYKR 231
           SN +    +    +N++ D+ +LN     A+AD  N     +  +++   + ++ PE   
Sbjct: 174 SNSI---TRLMKIQNQTRDFRLLNI-SASAVADQVNVSAGDIQAFYDSNPNLFQQPEQVD 229

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF---- 287
           +SY++  ++     I IS++EL   Y +++E   + E R    ++  +  +AD       
Sbjct: 230 VSYVVLSLNALADAIVISDEEL-LTYYQSREADLAREERRAAHILVEDTADADAVVERIQ 288

Query: 288 QSLKKGKKFIQLAEE------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           Q L  G+ F  LA+E       G+   D+    F+   + D +  +++FSL + G  +  
Sbjct: 289 QRLADGEDFAALAQELSIDTVSGEQGGDL---GFAGRGVYDPAFDEALFSL-EPGTVSDP 344

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-S 400
           +  SFG  +  +++I+ S   +      D+A Q+R   + E+ +E Y +    LA    +
Sbjct: 345 VRTSFGVHLIKLNDIRRSDVPAL----ADVAAQLRDDLSREQAREAYAQARTTLADSAYA 400

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
            D +    K ++++L   D   ++  G+     P+    L R    +D L+  +   L D
Sbjct: 401 ADNLEGPAKDLNLELRQADKITRNGGGE-----PFDHAGLVRQLFSEDVLNGGYNTELID 455

Query: 461 GSYMWVQIKESIPARDR--------KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
                V    ++ AR R         L+ V   ++ + +  KT   ++++A+++  +  +
Sbjct: 456 -----VADNRAVVARVRVYREAEVLPLDGVEDAIRSNLEAEKTRTALAARASEMAAQL-Q 509

Query: 513 EGKNFRDIGKN 523
            G++ +DI  +
Sbjct: 510 AGESLQDIADD 520


>gi|225629761|ref|ZP_03787708.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225591385|gb|EEH12478.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 445

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 213/450 (47%), Gaps = 28/450 (6%)

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           +Q  +  ++ R VD + +    V  I +P +  L   +E+ K ++  PEY+   YI    
Sbjct: 15  EQIYKSRYQTRVVDIVKITEDAVTNIPEPDDQALLDLYERNKSHFYYPEYRTAQYISLGQ 74

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298
              E +I+IS++E+    E+ + K      R +   +F  ++EA+ A ++ ++GK  F Q
Sbjct: 75  KYFEDQIKISDEEVDGIIEQQELK----NQRDIFNAIFSTKEEAETARRAFEEGKTSFEQ 130

Query: 299 LAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           + EE GK+ L +  + + +K+++P+  + + +F+L K G+ + V+  SFG+ I  V +  
Sbjct: 131 IVEEFGKAKLEETRVNNITKDFLPE-DVREKVFAL-KVGEVSEVLASSFGWHIVKVESAH 188

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
                   ++KKDI + +   K+ E+V +   ++   +  G+ ++EI     +    +  
Sbjct: 189 QISDEDLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSEIEEILSEYNLPIQTIGP 248

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           VD +GKD  G  V        L+  +F ++    K +   + D + + V+I + +P + +
Sbjct: 249 VDASGKDQSGNNVGD---SGDLISFIFSREKD-QKGYFKGVGD-AVVSVKIVDIVPPKLQ 303

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI--N 535
             EE      + W++    E +     ++ ++  ++     D+ +  G  L+   Q+  N
Sbjct: 304 SFEEGKALAVELWRSEFIKERMFKFGQEVAVQLREK----TDLEEIQGVELVKGQQMHRN 359

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISY 593
           ++D +N  F +  + ++F+         PI+  N +   V K  +S  G +   D     
Sbjct: 360 KVDQQNYPFSF--VEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNMLDTGKRV 417

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           +       L + +I+YL+S+Y V V+  ++
Sbjct: 418 MIS-----LKEQLISYLESKYKVEVNHAIL 442


>gi|148555266|ref|YP_001262848.1| hypothetical protein Swit_2351 [Sphingomonas wittichii RW1]
 gi|148500456|gb|ABQ68710.1| hypothetical protein Swit_2351 [Sphingomonas wittichii RW1]
          Length = 676

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 113/522 (21%), Positives = 207/522 (39%), Gaps = 29/522 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+   R+A  +W+    L ++ V F+I G+ ++  S+ G+S   +V +        I+  
Sbjct: 32  MISFFRRALSSWIILGILALVLVAFIITGV-ESPGSIGGTSNGATVAK--------IDGG 82

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKK----------ILDNLVSGATLDQFIEDIGLEA 110
           K     + +++    ++ R     LD K          + + L+    +D + ++ G   
Sbjct: 83  KVSTNDLLRRVQNQFDALRRERPELDHKSFLAAGGFEGVTNGLIDARAIDAWGKEQGFAI 142

Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
               +  +IA    F G    F   V  +RLA+  I+E+E        L R  ++   V 
Sbjct: 143 GKRLIDAQIAGMDAFRGITGAFDETVMRNRLAQARISERELRADIAGELMRNQILTPAVA 202

Query: 171 -GMRPSNLLLDQAKRFYFENR--SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
               P+ L    A     E R   V  I L     P    P+ A +   ++     +  P
Sbjct: 203 LAPTPAKLARPYAT-LLLEERIGQVGIIPLAAFIDPR--QPTEAEIAAAYKANIAAFTRP 259

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E + + Y LF   +       +  E+   Y +N + Y + E+R + Q+V PN+  A    
Sbjct: 260 EARVLRYALFGAEQVAAAAAPTEAEIATYYRENADSYAAREMRGLTQVVTPNETLARSIA 319

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            + + G+     A + G   S ++  S +       +        A  G       GSFG
Sbjct: 320 AAARGGQTLAAAAAKAGLEASTLTGQSKAAYGGSAGAAVADQAFAAAAGSVAGPAKGSFG 379

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           + +  V  +  +      E K +IA  +   KA E + E   ++E+ +A G S  E++  
Sbjct: 380 WYVVKVDAVTATPGRPLAEAKPEIAALLTRQKAQEALSELAGKVEDAIADGASFAEVAAN 439

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG--KDDPLSKDHTVALPDGSYMW 465
            K+  ++ P +   G+ +   +  A P    LL   F    DD  + +  VA  D  Y  
Sbjct: 440 NKLTVVETPALLAGGQPIDRPDWKAPPELGALLKSGFAGSPDDRPTVETVVA--DQQYAL 497

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           + + + IP     L +V   V +D  T + AE   +  +++V
Sbjct: 498 LGVAKVIPPTPLPLAQVRPMVIRDIVTKRAAERAKAIGDKMV 539


>gi|170692414|ref|ZP_02883577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           graminis C4D1M]
 gi|170142844|gb|EDT11009.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           graminis C4D1M]
          Length = 646

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/409 (21%), Positives = 171/409 (41%), Gaps = 25/409 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +    L+++ VP L + G+         S+ V SV   K+  + + N+
Sbjct: 1   MLDFFRNHKRLMM--FMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDNA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q+L    Q +G   + +   +     ++LD L+    L    + + L A    V   +
Sbjct: 59  MRQQLDRARQMLGAQFDIKAFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVL 118

Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D     D +   LA +G+   +Y +     ++   +     G    S 
Sbjct: 119 LNDPVISSLKNPDGSIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPAAIQGSAFTSK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L         + R V  I  + R   A   P++A L  +++ +++++  P    I Y++
Sbjct: 179 TLAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFP-----------NQKEAD 284
                    ++ ++ EL+  Y+ N   Y +  ++R    L+              +++AD
Sbjct: 239 MSPATVAASVQPADAELKKYYDDNIAHYRTEGQVRASHILIAAPKDASAADKAKAKQKAD 298

Query: 285 EAFQSLKKGK-KFIQLAEEQ----GKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDF 338
           E    +K    +F Q+A++     G +     LG F +  I    +  D++F+L KK + 
Sbjct: 299 ELLAQIKAHPDQFAQIAQQNSQDPGSAAKGGDLGYFGRGMIAGGKAFDDAVFAL-KKDEV 357

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           + ++   FGY I  V+++KP+ T  F EVK  IA  ++   AS+   +D
Sbjct: 358 SGIVQTDFGYHIVKVTDVKPAATKPFDEVKDQIARDLKTQLASKAFSDD 406


>gi|54297774|ref|YP_124143.1| hypothetical protein lpp1825 [Legionella pneumophila str. Paris]
 gi|53751559|emb|CAH12977.1| hypothetical protein lpp1825 [Legionella pneumophila str. Paris]
          Length = 624

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 111/519 (21%), Positives = 225/519 (43%), Gaps = 57/519 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+     S   S   V V  + +   +F  ++
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60

Query: 61  K-----QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +     Q+L  ++           A    L  ++L+ +++     Q     G E    + 
Sbjct: 61  RRTRAQQDLPQMT----------AADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQA 110

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I + P F  +D  FS   +   L+      + + +   + +        F+G    S
Sbjct: 111 NAAIVQIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGT---S 166

Query: 176 NLLLDQAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             L D+ KRF   Y + R  DY+ + +      A  S   +  ++ ++   +   E   +
Sbjct: 167 FALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTL 226

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN----------Q 280
            Y+L  +H+ + +I+IS D++++ YE+NK  Y +P    V  ++F  P           +
Sbjct: 227 DYVLLSMHDIKSQIKISPDQIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIK 286

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS-----LADSIFSLAKK 335
           ++ADE +  LKK  +     ++   S SD  L   +K  +P ++        ++ +L + 
Sbjct: 287 QKADEVYSDLKKHPEQF---DKYVASKSDDKLSITNKGILPWITGGQNEYGRALSNLTRP 343

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G  +  +   +GY I  +   KP  T S QEV+  + +Q+    A  K  +  ++L + L
Sbjct: 344 GQISIPVQTKYGYEIFKLIAYKPVTTKSLQEVENIMKDQLTSDMAQAKYAQVLEQLTD-L 402

Query: 396 ALGT--SMDEI--SRREKIVSIDLPLVDFAGKD--VKGKEVAAIPYKEQLLFRVFGKDDP 449
           +  T  S+D +  S + KI   + P     GK    K K+V    +   +L  +    +P
Sbjct: 403 SYQTPDSLDPVLDSLQLKIQHTE-PFSRDGGKQPITKNKQVIHAAFSTDVL-ELGNNSEP 460

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
           +  D      + S + +++K+ IP+R++ L+EV   +KK
Sbjct: 461 IQID------NDSVIVLRVKKHIPSREQTLDEVRDQIKK 493


>gi|332141940|ref|YP_004427678.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551962|gb|AEA98680.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 630

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/519 (19%), Positives = 221/519 (42%), Gaps = 25/519 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+   A   + ++ + F+  G+   L S +G++ V +V  +++       ++
Sbjct: 1   MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYLTS-NGTTAVATVNGEEISAQELERAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + +   +  + G  +    S         K +LD L++   + Q   ++GL     ++  
Sbjct: 60  QNQRAQMESQYGESIAQLFSSEQYLADFRKNVLDRLIAEKLIQQQATNMGLRVSDEQIRE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I + P F     +F ++ F + L + G    ++ D+    +++  +           + 
Sbjct: 120 TIVQMPEFQFG-GQFDNERFQAILRQNGFQVADFRDYLRTQMTQNQLAAALTNSSFALDG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++QA     + R+  Y+++++       + ++A +  ++     ++   E  +++Y+  
Sbjct: 179 EVEQANALQRQTRNAKYVLVSSDEFADSIEVTDADIEAFYNNNIASFDTEEQVKLAYVKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---NQKEADEAFQSLK--- 291
            V + + ++ +  D ++  Y+ N   Y + E R V  ++     +   A    +SLK   
Sbjct: 239 SVEDLKGRVSVDEDAVRTYYDNNLGSYGTEEQRRVSHILIEAGDDADAAKAKAESLKAEI 298

Query: 292 -KGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             G  F  LAE           G    F    + D +  ++ FSL   GD + V+   FG
Sbjct: 299 DSGADFAALAEANSDDTFSAENGGDLDFITPEMMDPAFDEAAFSLENVGDVSDVVETEFG 358

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISR 406
           Y +  ++ +K +   +F EV  +I + +    A EK  E    L E    +  ++D+ + 
Sbjct: 359 YHVIKLTEVKEAQVKTFDEVAGEIRDTLLYDAAMEKYFELQNTLAEIAFEVPDTLDDAAN 418

Query: 407 REKIVSIDLPLVD--FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
                ++DLP+ +     ++    E+++ P    + F     ++ L+ D  + L D + +
Sbjct: 419 -----AVDLPIQESVLFSRNTAPAELSS-PGLLDVAFSSELVEEGLNSD-IIELDDETVV 471

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
             ++ E  P R + L+EV   ++   K  K+ E   S A
Sbjct: 472 VARVVEHQPQRTQSLDEVREGIEASVKAEKSKEAAESWA 510


>gi|85708717|ref|ZP_01039783.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1]
 gi|85690251|gb|EAQ30254.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1]
          Length = 645

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 172/403 (42%), Gaps = 35/403 (8%)

Query: 21  LFVPFLIW-GLSDALFSVSGSST---------VVSVGRQKVPFSSFINSWKQELGMISQK 70
           +F+ FL+   L+ A   +SGS+T         V  VG + +  +    +    L     +
Sbjct: 17  IFIGFLVLVALAFAASDISGSATFGGLTGDDKVAVVGGEPITSNEMSGAMNNALDRARDQ 76

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
              +   +   + GL+++ L+ L+    + QF ++ GL A    V  EI +   F     
Sbjct: 77  NPTITMPQLVANDGLNRE-LELLIDRFAIGQFAQEYGLRAGENLVNSEILQIGAFRNVTG 135

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS---NLLLDQAKRF 185
           +F    + + L R+GI         T  + R D+    +    +RP+     L   A R 
Sbjct: 136 EFDQATYQAALRRQGI---------TDAILRKDIADGLLAQQLLRPAFAAPQLPRAAARQ 186

Query: 186 Y----FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
           Y     E R     ++ +       DP++  L  ++ + + N+  PE + I +  F    
Sbjct: 187 YAALVLERRQGRIGLVPSSEYAPDGDPTDEQLNTFYSENRANFILPERRTIRFARFGADS 246

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
            +   E ++ ++ A YE +  +Y + E R +   V P +  A    + ++ G      A+
Sbjct: 247 VQTVAEPTDAQIAARYEADAAQYAAQERRAISTFVVPTEAAAQALVERIRAGLSLEAAAQ 306

Query: 302 EQGKSLSDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           + G ++S   L    +E +      +LA+++F+   +GD         G+ +A V +++ 
Sbjct: 307 QAGFNVSSGEL--LDRESMSSSTSFALAEAVFA-ESEGDVITPQRSQLGWYVARVDDVEN 363

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +   S  +V+ +IA Q+R    + ++ +   ++EE +  GTS+
Sbjct: 364 TPARSLADVRGEIAAQIRREAVAAQLIDLSSQIEELVDTGTSL 406


>gi|268592032|ref|ZP_06126253.1| peptidyl-prolyl cis-trans isomerase D [Providencia rettgeri DSM
           1131]
 gi|291312424|gb|EFE52877.1| peptidyl-prolyl cis-trans isomerase D [Providencia rettgeri DSM
           1131]
          Length = 651

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 153/343 (44%), Gaps = 16/343 (4%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG----FVVNSERARSVGLDKKILDNL 93
           + ++    V  Q +       +++QE   + + +G     V ++E + ++ L ++ LDNL
Sbjct: 66  NSANNAAEVNGQSISREQLQQAFQQERQSLQEYLGDKFSEVASNEESMNL-LRRQALDNL 124

Query: 94  VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
           ++   ++Q+  ++ L A   ++   I   P+F   D +F  + +   L+R  IN      
Sbjct: 125 INNELINQYANELQLSASDQQIEQYIFSMPVFQT-DGRFDSEKYREILSRNNINADSLAA 183

Query: 154 HYTKMLSRTDVVGMFVGG--MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
              + L+R  +   F G     PS +        + + R +   +L+   V A    S  
Sbjct: 184 QIRQDLTRAQLGKTFTGTDFALPSEV--KAYAELFMQEREIRTAILDLAEVQAKQTASEE 241

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
            L  +++  ++++ +PE  ++SY+  D         +S +E++A Y++N + Y   E + 
Sbjct: 242 ELKAYYDANQNSFISPEKVQVSYVEMDAASMPPAT-VSAEEVKAYYDQNLKNYTQAEQKQ 300

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIF 330
              +   ++KEA++    LK+G  F  LA E  KS    S G      ++   S    I 
Sbjct: 301 YSMIQVASEKEANDILNELKQGADFATLATE--KSTDKFSAGQKGLIGWMEAASTPSEIV 358

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           +  L +KG  +  +     YVI  + +IKP     F++V++ I
Sbjct: 359 AAKLTEKGQLSAPVKSQNSYVIFRLDDIKPESIKPFEQVEESI 401


>gi|322834042|ref|YP_004214069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602]
 gi|321169243|gb|ADW74942.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602]
          Length = 626

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 177/389 (45%), Gaps = 16/389 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+ + L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRAAANHVVLKIILALIILSFILTGVGNYLIGGSGD-YAAKVNGQEIGRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + +   + Q++G    S  A S G    L ++ L NL+    LDQ+ + +G+     ++ 
Sbjct: 60  QNQRSRLQQQLGDQF-SALAGSDGYMQQLRQESLSNLIDVTLLDQYSKKLGITVSDQQIK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I  +P F   D +F +  ++  +   G       D++ +++ +  +          S+
Sbjct: 119 DAIFATPQFQ-TDGRFDNAKYLQSIQGMGYT----ADNFAQLMKQQLISQQLEQAYGQSD 173

Query: 177 LLLDQAKR----FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +L    +       ++R V    L+   + A    ++A L  ++++ K+++ +PE  ++
Sbjct: 174 FVLPVESKSLGGLILQSRDVQTATLDTDALAAKQQVTDAELQAFYDQNKNSFLSPEQVKV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI  D    + K  +++ ++ A Y+++K ++  PE R    +V  +Q +AD     LKK
Sbjct: 234 SYIEMDAAAMQGKTNVTDADISAYYDQHKSEFGQPERRRYSVIVLKSQADADAVAAELKK 293

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIA 351
           G  F +LA+ +         G       P+ +L +    +L  KG  + VI    G+ I 
Sbjct: 294 GTDFAELAKTKSTDALSARQGGDLGWMEPETTLPEFKNANLTTKGQVSGVIKSDSGFFIL 353

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKA 380
            + ++ P       +V+  IA++++  K+
Sbjct: 354 RLDDVTPEQVKPLADVRNTIADKLKQEKS 382


>gi|301632869|ref|XP_002945502.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Xenopus
           (Silurana) tropicalis]
          Length = 638

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 176/417 (42%), Gaps = 47/417 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           MLE IRK S+  +  I L +L +P F++ G+    FS S S  V  V    +  S + N+
Sbjct: 63  MLESIRKHSKFGM--ILLFLLVIPSFVLVGIDRNYFSES-SPVVARVNGHDIKQSDWDNT 119

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFIED---------IGLE 109
            + E   I           RA+S  +D K+LD   +  ATL++ + D         + + 
Sbjct: 120 HRMESDRI-----------RAQSPSVDAKLLDTPQARYATLERMVRDRVMTAAVQKMHIV 168

Query: 110 ADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
           A   R+   +   P        D     D + + +  +G+  + +  +    L+ + V+G
Sbjct: 169 ASDARLASALKDIPAIAALKRPDGSLDADAYRALVGAQGMTPEGFEANMRHDLAISQVLG 228

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
             +     +      A    F+ R +     N +       PS+A L  +++    +++ 
Sbjct: 229 GVLQSAFSTEGQFKLAMDALFQRREIQVARFNAQDFAGKVAPSDADLQTFYQSRTAHFQQ 288

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           PE   + Y++ D+      I +S D+L+  Y++N+E+    E R    ++    ++A   
Sbjct: 289 PEEASVEYLVLDLDAVRAGITLSEDDLRTYYQENRERLAGKEERRASHILVNATQDAPAQ 348

Query: 287 FQSLKKGKKFIQLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSI 329
            +   K +    LA                 ++ G + S   LG F++  +      D++
Sbjct: 349 ERETAKARAQELLAQVRQNPGGFAGIAKKNSQDSGSAPSGGDLGFFARGAMVK-PFEDAV 407

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           FS+ +KGD + V+   FGY I  ++++K     SF++ +  +  +++  +A  +  E
Sbjct: 408 FSM-QKGDVSDVVESDFGYHIIQLTDVKTPQPPSFEQARAKLEAELKQQQAQSQFTE 463


>gi|319763570|ref|YP_004127507.1| ppic-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans BC]
 gi|330824229|ref|YP_004387532.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans K601]
 gi|317118131|gb|ADV00620.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans BC]
 gi|329309601|gb|AEB84016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans K601]
          Length = 640

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/420 (21%), Positives = 178/420 (42%), Gaps = 53/420 (12%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IRK ++ WV  +  +++   F++ G+    F   GS  V  V  + +  + + N+ 
Sbjct: 1   MLESIRKHTK-WVMGLLFLLIIPSFILVGIDRNYFG-GGSPVVARVDGKDITQADWDNAH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFIEDIGLE---------A 110
           + E   I           RA+S G+D K+LD+  +  ATL++ + D  L+          
Sbjct: 59  RMESDRI-----------RAQSPGIDAKLLDSPQARYATLERLVRDRVLQVAAQKMHMLT 107

Query: 111 DHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
              R+  E+   P        D     + + +    +G+  +         +S + V+G 
Sbjct: 108 SDARLARELQSIPQIAALKRPDGTLDAEAYRALAGAQGLTPEGLEARVRHDISVSQVMGS 167

Query: 168 FVG----GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
            V     G   S L LD      F+ R +     +     +    ++A L  +++ +   
Sbjct: 168 VVASAFAGPAESKLALDA----LFQRREIQVARFDPSAFVSKVAVTDADLEAYYKAHLAK 223

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           ++ PE   + Y++ D+   +  I ++ D+L+  Y++N  +    E R    ++    K+A
Sbjct: 224 FQQPEQATVEYVVLDLDAVKAGITLNEDDLRTYYKENLSRLSGKEERRASHILVNAAKDA 283

Query: 284 DEAFQSLKKGK-------------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLA 326
             A +   K K             +F ++A    ++ G + S   LG F    +      
Sbjct: 284 PAAEREKAKAKAQELLAEVRKAPGRFAEIARKESQDTGSAASGGDLGFFGHGAMVK-PFE 342

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           D++FSL KKG+ + V+   FGY +  ++++K     SF+E++  +  ++R  +A  K  E
Sbjct: 343 DAVFSL-KKGEISDVVETDFGYHVIMLTDVKTPRQPSFEELRPSLEAELRQQQAQRKFAE 401


>gi|119897859|ref|YP_933072.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72]
 gi|119670272|emb|CAL94185.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72]
          Length = 631

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 168/409 (41%), Gaps = 34/409 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59
           M + +R   R  VA+I L +L +PF  +GL DA F    G   V  V    +  + F  +
Sbjct: 1   MFDAVRNNKR--VAQIILALLIIPFAFFGL-DAYFKDGPGGGEVAVVDGAPITAAEFDRA 57

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            ++    +  ++G  V+S    S  L + +L+ +VS   L ++  D  +     ++   I
Sbjct: 58  LRERQDRLRNEMGGPVDSALLESPALRRAVLETMVSQRLLARYAADRHMVVTPQQLQETI 117

Query: 120 ARSPLFHGKDNKFS----HDVFVSR-LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           A    FH ++ +FS     DV  ++ +   G   +   D   + L+ +     F      
Sbjct: 118 AAVEAFH-ENGQFSLQRYQDVLRAQNMTPAGFEARLAQDVRIQQLAASIGEAAFTPAASA 176

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
              LL Q      E R V  +             ++     +++     +  P   +  Y
Sbjct: 177 KRFLLAQ-----LEEREVRELRFPASRYLGEVKLADGAAQAFYDANAAGFEQPARLKAEY 231

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----------- 283
           ++ D     K++++S++E++A Y+ N  ++  PE R    ++      A           
Sbjct: 232 VVLDEAALAKQVKVSDEEVRAFYDGNPGRFGQPEERRARHILIQVDAGAPEAEVAKAKAA 291

Query: 284 -DEAFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
            DE   +L K   +F  LA    ++ G +     LG F +  +      D+ F  A KG 
Sbjct: 292 IDEIAATLAKDPGRFEALAKASSQDSGSAARGGDLGFFGRGAMVK-PFEDAAFGQA-KGV 349

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
             PV+   FG+ I  V++IKP+ T S   V+ +I +++R   A  +  E
Sbjct: 350 VGPVVRSDFGFHIIQVTDIKPATTRSLDSVRGEIVDELRKQAAGRRFAE 398


>gi|296157831|ref|ZP_06840665.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           Ch1-1]
 gi|295892077|gb|EFG71861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           Ch1-1]
          Length = 645

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/409 (21%), Positives = 170/409 (41%), Gaps = 25/409 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +    L+++ VP L + G+         S+ V SV   K+  + + ++
Sbjct: 1   MLDFFRNHKRLMM--FMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q+L    Q +G   + +   +     ++LD L+    L    + + L A    V   +
Sbjct: 59  MRQQLDRARQMLGAQFDMKSFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVL 118

Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D     D +   LA +G+   +Y +     ++   +     G    S 
Sbjct: 119 LNDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L         + R V  I  + R   A   P++A L  +++ +++++  P    I Y++
Sbjct: 179 TLAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVFP-----------NQKEAD 284
                    ++ S+ +L+  Y+ N   Y    ++R    L+              +++A+
Sbjct: 239 MSPATLATSVQPSDADLKKYYDDNIAHYRVEGQVRASHILIAAPKDASAADKAKAKQKAE 298

Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSDIS----LGSFSKEYIPD-VSLADSIFSLAKKGDF 338
           E    +K    +F QLA++  +     S    LG F +  I    +  D++F+L KK + 
Sbjct: 299 ELLAQIKAHPDQFAQLAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEV 357

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           + ++   FGY I  V+++KP+ T  F EVK  I+  ++   AS+   +D
Sbjct: 358 SGIVQTDFGYHIVKVTDVKPAITKPFDEVKDQISKDLKTQLASKAFTDD 406


>gi|258405892|ref|YP_003198634.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfohalobium
           retbaense DSM 5692]
 gi|257798119|gb|ACV69056.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfohalobium
           retbaense DSM 5692]
          Length = 626

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 104/528 (19%), Positives = 230/528 (43%), Gaps = 40/528 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK +++W  K    ++ + F+ WG+ +       ++ V  V  + +    F  ++
Sbjct: 1   MLDAMRKNAQSWAIKFLFALIILVFVFWGVGN--LGNDQATVVAEVQGEAILIRDFQQAY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ +  + +K    ++ E    + L +++L++L++   L +  + +GL      V   + 
Sbjct: 59  QRTVENLRRKQP-DISREDFEQMQLKRQVLNDLITSQLLFREAKKLGLAVTAPEVRQYVQ 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P+F   D +F    +   L    +   ++    T+ L  T+ +   V    P+++   
Sbjct: 118 QMPVFQNADKQFDPSRYEQLLRANQLTPAQFEADLTRSLL-TNKIQRAV--KLPASVSEA 174

Query: 181 QAK---RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           QAK    F  E   ++Y +   +  P +A P+   +  ++++ +  ++ P    + Y+L 
Sbjct: 175 QAKDLFAFSQEKARMEYALFAWQDQPGLA-PNEEAVKHYYQENQKQFQRPARMEMDYLLL 233

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPE---IRTV---------EQLVFPNQKEADE 285
                     +S++E++A YE N  ++   E    R +         +Q V   +++A  
Sbjct: 234 TPEGLAAAQPVSDEEIKAYYEANPGEFERQEELKARHILIEVPEGADDQQVTEAREQAQA 293

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             + L+ G    +LA E     S      LG F++  +  V   ++       G+ +  +
Sbjct: 294 LVERLRDGADLAELAREYSDGPSSAQGGDLGWFARGEM--VEAFEAAAFALDTGEISDPV 351

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
             SFG+ +  V + KPS T  F+EV+ +I  ++   KA++K+ +      + +  G S+ 
Sbjct: 352 RTSFGFHVITVEDRKPSGTQPFEEVQDEIRQEIGADKAAQKMSDLLDEALDLILSGKSL- 410

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY-KEQ--LLFRVFGKDDPLSKDHTVALP 459
               ++   ++++PL   +G   + +    I   KEQ   LF +     P     T  L 
Sbjct: 411 ----KDTAATLEIPL-RHSGPFTQAQGPEGIELDKEQRETLFTL----TPGEVTDTPLLL 461

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           D  Y+  +  +  PA+ R+L+ V   ++   K  +  E+  + A  ++
Sbjct: 462 DNGYLIAKQTDFSPAQPRELKAVRDQIETTLKREQGLEKAKAAAENVL 509


>gi|90579274|ref|ZP_01235084.1| putative peptidyl-prolyl cis-trans isomerase D [Vibrio angustum
           S14]
 gi|90440107|gb|EAS65288.1| putative peptidyl-prolyl cis-trans isomerase D [Vibrio angustum
           S14]
          Length = 630

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 182/415 (43%), Gaps = 33/415 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M+E +R+ + +   KI L ++   F+  G+   L    G+  V + V  +++   +F  +
Sbjct: 1   MMERLREGANSIWVKIILSLIIFSFVFAGVGSYL--AGGNEQVAAKVNDKEISQRAFEQA 58

Query: 60  WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ +   + Q++G     +  + A        +L+ +V+   ++Q   ++GL     +V 
Sbjct: 59  YQNQRNQMQQRLGDYFSTLMGDPAYVQQFRNSVLERMVNDELIEQRATELGLGVSDAQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   D  F+++ +   L R GI+ +++ +   K + R   +    G     N
Sbjct: 119 QAIVAMPAFQ-VDGVFNNEQYNLTLRRAGISPEQFAESIRKDMLRQQFLSALEGSDFALN 177

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ------WFEKYKDNYRAPEYK 230
             L++ ++   + R V  + LN      +AD ++ V         ++EK K  +  P   
Sbjct: 178 NELNELRKLESQERVVRTLKLN------LADFTDKVTVTDEEAKAYYEKNKTQFTRPAQV 231

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---- 286
           ++SYI          I+I++ E +A Y ++K KY + E   V  ++     +A +A    
Sbjct: 232 KVSYIELSDKNLVNNIKITDKEAEAYYNEHKSKYSTAEKIQVSHILVKGDSDASKAKAEA 291

Query: 287 -FQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPV 341
               LK G  F  +A++          G     F K  + D +   + FSLAK GD + +
Sbjct: 292 LLAELKAGANFADVAKKSSDDTFSAKDGGKLDWFGKGVM-DPAFEKAAFSLAKPGDMSGL 350

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           +  SFGY I  +  I+      F +VK  I  +++     ++V E + +L+  LA
Sbjct: 351 VKSSFGYHIILLDGIEEPKVKPFADVKASIVAELQ----EQQVAEQFYKLQSKLA 401


>gi|304311294|ref|YP_003810892.1| Peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium HdN1]
 gi|301797027|emb|CBL45240.1| Peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium HdN1]
          Length = 641

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 105/533 (19%), Positives = 216/533 (40%), Gaps = 43/533 (8%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++  R     WV K  LV++ VPF+I G+ + +F+       + V   ++  +    + +
Sbjct: 1   MDAFRSMLTGWVGKSLLVLISVPFVIVGI-EGIFTSGRDRAALVVDDHEISNAEIQQAVE 59

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                I +++G  V+     +  +   +   L+    L  F +  G           +  
Sbjct: 60  NRRTQILEQLGKGVDPSFITAEMVRPAVEQELIKRQLLIGFADKDGFSVPEEAAKSYVRA 119

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P F     +FS  +  S L+R GI  K  +++ +  L    + G   G    +   +++
Sbjct: 120 VPQFQTPAGEFSQPLLNSYLSRAGITAKGLLNNVSTSLLTEQIQGGLGGSAFATPADVER 179

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 + R +    +      A  +PS+  LT+++E ++D+Y++ E  ++SY+     +
Sbjct: 180 ILSLDKQVRDIGVAYIKPEEFRAGINPSDFDLTEYYEAHQDDYQSEERVKVSYVHLSQEQ 239

Query: 242 KEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---------ADEAFQSLK 291
                E IS+ E+Q + ++  +     E R  E ++F    +         A++A   LK
Sbjct: 240 FAANDEPISDAEIQDKLDEMIKDAEGNERRHAEHILFETGSKHSDAEARSLAEKALAELK 299

Query: 292 KGKKFIQLAEEQ---------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            GK F +LA+ Q         G  L     G ++ E+       D++F+L    D + V+
Sbjct: 300 AGKNFEELAKAQSEDFESAKNGGDLGYAGRGVYAPEF------EDALFALQAPNDISGVV 353

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
              FGY I  +  +        Q+ +  I  ++R  + +  +      ++        + 
Sbjct: 354 KTEFGYHIIKLIGVDEPPLPDMQKSRDHIIAEIRKERIASNIGTIIDDIDRMAFESNDLS 413

Query: 403 EISRR-EKIVSIDLPLVDFAGKDV-KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
           EIS + ++   +   L    G  +    +V    +  ++L      D        + L D
Sbjct: 414 EISAQYDQKPEVSDWLTRKGGTGIFADPKVVEAAFSSEILQEQRNSD-------VIELED 466

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           GS + +++ +  P R+  L+EV   V++        + ++SKA +L  E +KE
Sbjct: 467 GSLVVLRMDQHEPVRELSLDEVKDKVRE--------QVIASKAQELATEQAKE 511


>gi|218781789|ref|YP_002433107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763173|gb|ACL05639.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 624

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 121/559 (21%), Positives = 240/559 (42%), Gaps = 51/559 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML ++R+ + +W+ KI L ++ + F ++    + F   G+   V V  + +  ++F   +
Sbjct: 1   MLSMMREHATSWIIKILLGIIVLVF-VFSFGYSSFQNRGNRLAV-VNGETISRNTFERMY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           K       +K G   + +  R     + + D+LV    L Q   D+G++     +  +IA
Sbjct: 59  KNVYDYNREKFGDSFDYDLLR-----QNVFDDLVDNVLLLQHARDLGMQVTEDELVQDIA 113

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++ +F     +F    +   L+R G+  K+Y     + +  T +    +   + S+   +
Sbjct: 114 QTQVFQTSSGQFDPKRYEYILSRSGVTSKDYEAEKARNMLSTKIRSYLMAMAQVSD---E 170

Query: 181 QAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +A+++Y    +  S+ Y++        +    + +   +++ +  +Y      ++SY+ F
Sbjct: 171 EARQWYNWDAKQVSMKYVLFEPSTFTDVVATEDQI-QAYYDAHSADYETLPMAKVSYLYF 229

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE--AFQSLKK--- 292
           +  +  K++ I  +E++  Y+ N + Y+  +      ++    K+A E  A ++LKK   
Sbjct: 230 NPKDFLKEVSIPQEEIELFYDDNLDSYYEDQQVHARHILISLAKDAPEEKAAEALKKAQE 289

Query: 293 -------GKKFIQLAEE-----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                  G+ F +LA+E       K+  D  LGSF +  +      D+ F+L   G+ + 
Sbjct: 290 IEAKAKAGEDFAELAKEFSDGPTAKNGGD--LGSFPRGRMVK-PFEDAAFAL-NAGEISD 345

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
            +   FG+ I  V  IK + T    EV+  I +++    A   + E Y   E       S
Sbjct: 346 PVRTDFGFHIIKVEEIKEARTKELSEVEDSIRSKL---AADVALDEAYNAAEAAFDNLLS 402

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG--KDDPLSKDHTVAL 458
             ++++      ++L   D+  +  +G    A P  +++   VF   KD   S    +  
Sbjct: 403 DMDMAKAAADAGVELKTTDYFTE--QGPAGVANP--QEMADEVFDMYKD---SFSDVLQF 455

Query: 459 PDGSYM-WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
            DG Y+ W+  K+  PA   +LEEV   V  D K    A+    KA +  LE  K GK+ 
Sbjct: 456 DDGFYIVWMLDKK--PAIIPELEEVKAKVAADVKKEVMAQAAIDKAAEF-LEEVKGGKSM 512

Query: 518 RDIGKNLGASLLTTNQINR 536
            D       ++  T    R
Sbjct: 513 EDAAAAYNVTVKNTGFFKR 531


>gi|329119300|ref|ZP_08247987.1| peptidyl-prolyl cis-trans isomerase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464647|gb|EGF10945.1| peptidyl-prolyl cis-trans isomerase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 603

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 172/384 (44%), Gaps = 40/384 (10%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK-QELGMISQKIG 72
           AKI L ++ + F+ +G    +   +GS  +V VG +K+   +   + + Q LG     + 
Sbjct: 12  AKIMLGLIALTFVGFGAGGII--ATGSDYIVKVGGEKISTQNVQEAQREQNLGSGQDALA 69

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
           ++  +ERA  +    K++   VS A L Q I D                 P FH ++ +F
Sbjct: 70  YL--TERAY-LAEGAKMMGIGVSEAQLKQVIVD----------------DPGFHDENGRF 110

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           S   F   L + G+ E+ ++++     +  ++V +  GG   S+   +Q       +R +
Sbjct: 111 SEAKFRLFLQQGGLTEERFLENLRNSFALQNLVNLAGGGNIVSSAQAEQYAALMLADREI 170

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
             I L+ +   A     +A L  +++K K  YR P+  +  YI        +  ++  DE
Sbjct: 171 RSIALDPKTFAAQIKADDAALKAYYDKDKSKYRLPQAVKYQYIELSPRTLAESQKVGEDE 230

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----DEAFQSLKKGK----KFIQLA---- 300
           L+  +E+ ++K  +P  R V  ++   + +A     EA + L + K    KF +LA    
Sbjct: 231 LKKAFEE-QQKNAAP-TREVAHIMLKTEGDAAKTKAEAEKILAEAKAAPEKFAELAAKYS 288

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           ++ G + +  SLG+  K+     +   ++ +L  +GD   ++ G   + I  V N++   
Sbjct: 289 QDAGTAQTGGSLGAVGKDSPLPEAFKTAVSALG-QGDIA-LVEGEGAFHIVRVGNVRSGL 346

Query: 361 TVSFQEVKKDIANQMRITKASEKV 384
             SF+E K  +   ++  KA E V
Sbjct: 347 --SFEEAKPALEAALKEKKAREAV 368


>gi|254492046|ref|ZP_05105223.1| PPIC-type PPIASE domain protein [Methylophaga thiooxidans DMS010]
 gi|224462743|gb|EEF79015.1| PPIC-type PPIASE domain protein [Methylophaga thiooxydans DMS010]
          Length = 613

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 131/640 (20%), Positives = 259/640 (40%), Gaps = 59/640 (9%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVV--SVGRQKVPFSSFINSWKQELGMISQKIGF 73
           + + ++ +PF +WG++  L   +G+S VV   V  +++  +    S +Q    +   +G 
Sbjct: 2   LIVGLISIPFALWGVNSYL---TGASDVVVAEVNGKEITQAELQQSLQQYRDQMRNMMGE 58

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             +        + + +LD L+    L    E +G   +   +   I  +P F  +D +F 
Sbjct: 59  QFDPAMFEGAMVKRNVLDGLIEQQLLRDANEKLGQRINDAEISQVIRTTPAFQ-RDGEFD 117

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            + +   LAR G +   Y       L    +          +   + Q  R   + R + 
Sbjct: 118 AEYYNMVLARVGYSPASYEAQLRADLMSQQLTQNIETTALATEKDVRQTLRLQEQRREIA 177

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
           Y V+  +        ++  + Q ++ ++ NY++PE  +++YI   V      + ++ D+L
Sbjct: 178 YGVVPVQEYVEQVSVTDDEVQQLYDNHQSNYQSPEQLKLNYIELSVATISSTLTVTEDDL 237

Query: 254 QAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEAFQS----LKKGKKFIQLAEE----QG 304
           +  Y  N+ ++  P+ R     L+  +  +A    ++    L+ G+ F  LAEE     G
Sbjct: 238 KQFYADNQSQFVGPQQRRASHILIEGDDNDAQTTIEAIATRLENGEDFSSLAEELSQDPG 297

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            +     LG F ++ + D +  ++ F+L   GD +  +   FGY +  +++IK      F
Sbjct: 298 SASQGGDLGFFERDVM-DPAFEEAAFALETIGDVSEPVKTEFGYHLIKLTDIKQPEGQEF 356

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL-VDFAGK 423
            +V+ ++    R  +A       Y + E+   L     E      + + DL L +     
Sbjct: 357 SQVRDEVEKLYRRQQAESIF---YDKAEQLANLSY---ENPDNLDVAADDLELQIKTTES 410

Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKD---HTVALPDGSYMWVQIKESIPARDRKLE 480
             +    + I  +++++   FG DD L  D     + L D   + +      P+     +
Sbjct: 411 FTRNGTESGIASEQKVIAAAFG-DDVLKNDLNSAVIELADDHLVVIHKNSYTPSTVLPFD 469

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
            V   +++     + A E + +  + VL+  K+G        N    LL T Q      E
Sbjct: 470 SVSPAIEQQL-LFEKASEKAREHGESVLKELKQG--------NQATDLLPTWQ------E 514

Query: 541 NKFFGY--DGIS-QVFSGPVEMVK--------CFPIENGLSYVVFKVT---NSKVGPVQE 586
            +F+G   D IS Q+      M K         F   NG +Y+V ++T     K   V+ 
Sbjct: 515 AEFYGRESDNISMQILQRAFAMSKPESGSKFAGFTANNG-NYIVIELTAVDEGKPADVEA 573

Query: 587 KDK--FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +D+      LTQ+     + + I  L+ Q  + + D  +Q
Sbjct: 574 EDQQALKQQLTQVHANAEVQAFITSLREQADIEILDETLQ 613


>gi|68249587|ref|YP_248699.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           86-028NP]
 gi|68057786|gb|AAX88039.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           86-028NP]
          Length = 622

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 186/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + V+K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  FV  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLEDEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        + +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  ++  +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400


>gi|315634906|ref|ZP_07890188.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC
           33393]
 gi|315476458|gb|EFU67208.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC
           33393]
          Length = 615

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 168/388 (43%), Gaps = 28/388 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +  AS  W +K     + V F+I  ++  L++   +S    V  +++   +F N +
Sbjct: 2   VMEKLHGASTNWASKFLFGFITVTFVISSMAGYLYTRVDNS-AAKVNGEEISQQAFQNQY 60

Query: 61  K-QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
                 +  Q+I        A+   L +++L +L+    L Q+  ++ L     R+  EI
Sbjct: 61  NIASRNLTPQEI-----DSPAQVANLKRQVLASLIDQELLRQYANELKLGVSDARIKQEI 115

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
             +P F   + KF + ++   L   GI+ + Y  +  + L    +      G    ++  
Sbjct: 116 VTTPTFQN-NGKFDNTLYQQTLQNNGISAETYAGYVREALRLEQLQSGL--GTTTFSVPA 172

Query: 180 DQAK--RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            Q K  + +F++R +    L+  +  A  + S+  +  +++ +K  +  PE  ++ Y+  
Sbjct: 173 QQEKLTKLFFQSRQIRLANLSLANEIAKQEVSDEEIQAYYDAHKAEFTIPETVKVQYLDL 232

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                E  I I++ E+   Y+ NK ++ +   + +  +    +++A E +Q L+ G  F 
Sbjct: 233 SGAAMENNINITDVEIAQYYQDNKPQFTTQGQQRLAHIQVKTEQQAQELYQQLQNGANFA 292

Query: 298 QLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            LA+         E+G  LS +S G F K +       D+  +LA  G ++  ++    Y
Sbjct: 293 DLAKNHSIDPTSAERGGDLSWVSAGEFPKVF------EDAANALA-VGQYSQPVNLDNHY 345

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMR 376
            I  V   K       + VK  IA Q+R
Sbjct: 346 HIILVEERKEPQLQPLESVKAQIAAQIR 373


>gi|325274293|ref|ZP_08140404.1| periplasmic folding chaperone [Pseudomonas sp. TJI-51]
 gi|324100576|gb|EGB98311.1| periplasmic folding chaperone [Pseudomonas sp. TJI-51]
          Length = 623

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 104/522 (19%), Positives = 224/522 (42%), Gaps = 29/522 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V   + G      + + S     V  Q +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKSIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L ++ L  L+S   L Q  ED         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDEKLLREEALKGLISRKLLLQGAEDAKFAFSDAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KFS D F   + + G    ++ D    ML+   ++G    G+  S+ + D
Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQFRD----MLAEEMLIGQLRTGLAGSSFVTD 175

Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           Q    +   E ++ D+  L  +  PA    S+A +   ++++   + +P+   I YI   
Sbjct: 176 QQVDAFARLEKQTRDFASLTFKADPAAVKVSDAEVKAHYDQHAKEFMSPDQVVIDYIELK 235

Query: 239 VHEKEKKIEISNDELQAEYEKN-----KEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLK 291
                 +++++++EL+A+YEK      ++++ +  +  V   V   Q +  A+E  Q L 
Sbjct: 236 KSAYFDQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVSDAQAKARAEEIEQRLA 295

Query: 292 KGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           KG+ F  LA+E     G + +   LG F+   + D +  ++++ L + G  +  +   FG
Sbjct: 296 KGENFATLAKEFSQDPGSAGNGGDLG-FAGPGVYDPAFEEALYKL-QDGQVSAPVRTQFG 353

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y +  +  ++     SF  +K  +   ++     ++  +  K+L++     + + + ++ 
Sbjct: 354 YHLIKLLGVQAPEVPSFASLKDKLTRDLKTPLVEQRYVDASKQLQDAAYEASDLAQPAQD 413

Query: 408 EKI-VSIDLPLVDFAGKDVKG-KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
             + V    P     G+ +   + V    + E++L       D  +    + L   + + 
Sbjct: 414 LNLKVHTSAPFGREGGEGITANRSVVQAAFSEEVL-------DEGANSTAIELDPETTVV 466

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           +++KE        LE V  ++++     K   E+ +KA++L+
Sbjct: 467 LRVKEHRKPEQLPLEAVAQNIRQHLAKEKATAELKAKADKLI 508


>gi|317047179|ref|YP_004114827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b]
 gi|316948796|gb|ADU68271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b]
          Length = 622

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 113/517 (21%), Positives = 221/517 (42%), Gaps = 56/517 (10%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG-MISQKIGFVV 75
           F++     +LI G SD    V+G    +S       +++  N  +Q LG   SQ     +
Sbjct: 25  FVLTGVGNYLIGGNSDYAAKVNGHE--ISRAELDQAYNTERNRQQQMLGDQFSQ-----L 77

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
            S       + ++ L  L+  A LDQ+I+D+ +     +V   I     F   + KF + 
Sbjct: 78  ASNEGYMQQMRQQALSQLIDQALLDQYIKDLHIGISDDQVKDAIFNQQAFQ-TNGKFDNV 136

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVG-------MFVGGMRPSNLLLDQAKRFYFE 188
            +   +   G    +Y +   K L+   ++        M  G    ++ L+D       +
Sbjct: 137 KYNGLITSMGFTADQYAEALRKQLATQQLINAVANTDFMLKG---ETSKLVD----LVAQ 189

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
            R +    ++   + A    ++  ++Q+++++++++ APE  R+SYI  D    ++    
Sbjct: 190 QREIRQATIDVNALAAKQTVTDDEISQYYQQHQNSFMAPEQFRVSYIKMDAASLQENA-- 247

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           S  ++Q+ ++++K  Y  P+      +    + +A+    +LKKG+ F  LA+   KS+ 
Sbjct: 248 SEADIQSWFDQHKADYSQPQRNRYSVIQTKTEADANAVLDALKKGEDFATLAK--SKSID 305

Query: 309 DIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
            IS      +G       PD  L ++  +L +KG  + VI  S G++IA + +I+P    
Sbjct: 306 PISARKGGDMGWLEPNTTPD-ELKNA--NLTEKGQLSGVIKSSVGFLIARLDDIQPEQVK 362

Query: 363 SFQEVKKDIANQMRITKA-------SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
              EV   +A++++  KA        +KV E      E LA       +    K+V  D 
Sbjct: 363 PLSEVHDAVADKVKQEKAVDAFYKMQQKVSEAASNDNESLAGAAEASGL----KVVETDW 418

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWV-QIKESI 472
              D   +D+    V      +Q +F   + G++     +  +   DG   +V +I E  
Sbjct: 419 FSQDSVPQDLDFDAV------KQAVFNGGLVGQNGAPGNNSDIISVDGDRAFVLRISEHK 472

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
           P   + L++V   +    K  K  ++   +AN+L+ +
Sbjct: 473 PEAVKPLDQVKAQIADTLKHDKATQQAKEQANKLLAD 509


>gi|254796993|ref|YP_003081830.1| Rotamase family protein [Neorickettsia risticii str. Illinois]
 gi|254590229|gb|ACT69591.1| Rotamase family protein [Neorickettsia risticii str. Illinois]
          Length = 594

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 105/222 (47%), Gaps = 2/222 (0%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
           S S  V SVGR+K+    F++ +K+         GF +   + + +G+ + +L  L+   
Sbjct: 40  SRSDVVASVGREKILVDDFVSEYKKHERYFQSMFGFGLTDTQLKDIGVGRIVLTTLIQDK 99

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
            ++Q  + +GL  D      +I ++P F+ ++ KF        L R  + E+EYI     
Sbjct: 100 VIEQLFKQMGLHIDTSIAIDKIKKNPAFN-ENGKFDRAKLDDFLDRNDLTEREYIRKVKC 158

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            + +  V G F         L +    F +  R V    +N   +P +  P+ + L  ++
Sbjct: 159 EIGKDFVFGPFFNIQGEYVKLAELFYNFEYGLREVSITKVNKNALPILPVPTESELVSFY 218

Query: 218 EKYKDNYRAPEYKRISYILF-DVHEKEKKIEISNDELQAEYE 258
           E+ KD + + EY+   YIL  + + K + +EI+++++Q  +E
Sbjct: 219 EENKDKFFSDEYRTAEYILISEDNVKPELVEIADEDVQKSFE 260


>gi|229843938|ref|ZP_04464079.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae 6P18H1]
 gi|229812932|gb|EEP48620.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae 6P18H1]
          Length = 622

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 186/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + V+K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  FV  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        + +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  ++  +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400


>gi|309973498|gb|ADO96699.1| Putative peptidyl-prolyl cis-trans isomerase [Haemophilus
           influenzae R2846]
          Length = 622

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 186/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + V+K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  FV  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        + +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  ++  +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400


>gi|148828172|ref|YP_001292925.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           PittGG]
 gi|148719414|gb|ABR00542.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           PittGG]
          Length = 622

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  FV  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        + +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  ++  +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400


>gi|262376134|ref|ZP_06069364.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
 gi|262308735|gb|EEY89868.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
          Length = 621

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 110/525 (20%), Positives = 210/525 (40%), Gaps = 75/525 (14%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFIN 58
           +E  RK  + W+ K+ LV+   P  + G+ +  FS   S    SV   ++      S   
Sbjct: 1   MEAFRKVIKGWLGKVLLVLFLTPLALVGI-EGYFSSGNSDAAKSVNGTEISQKELESLTK 59

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           S+K++    +     ++N        +D+K +D LV+   L Q  E++G+     ++   
Sbjct: 60  SFKEQYLSYANGDETLLNQSF-----IDQKAMDTLVARTLLLQQAEELGISLSDQQIEQM 114

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGMR 173
           IA+ P F  +D KFS+ ++ + L   G+  +  I     DH  KMLS T     F+    
Sbjct: 115 IAQQPTFQ-QDGKFSNALYENYLKSIGMTNRALIESLRKDHALKMLSST-----FLDYPL 168

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            S + + Q      E R +    +N          ++A +  ++EK+K  ++ P    + 
Sbjct: 169 VSPVEMQQIADLQTEQRHIHISSINLDSYKKDVKVTDADIAAYYEKHKTLFKQPTSVDVD 228

Query: 234 YILFDVHEKE-KKIEISNDELQAEYE---KNKEKYFSPEIRTVEQLVFPN-------QKE 282
           Y++    + + + + +++ ELQ  Y      +++   P+++ +  L+  +       +K 
Sbjct: 229 YVVLKPSDIQVQSLAVTDAELQEAYTAFVATQKQAVKPDVKHI--LITADSRSDAEAKKL 286

Query: 283 ADEAFQSLKKGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
           A E    +K G  F Q A +         +G +L+    G F   +       D   S  
Sbjct: 287 ATEIAAKIKAGTTFAQAAAQYSEDPESKSKGGALAVYEEGVFGTAF-------DQTVSSL 339

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           K G  +  +   +GY I  V    P   V SF+  K  ++ +    K S    +    L 
Sbjct: 340 KSGQVSAPVKTDYGYHIISVQT--PDVAVPSFESQKARLSEEALAAKKSNAFSDTVNTLN 397

Query: 393 EFLALGTSMDEISRREKIVSIDL----------PLVDFAGKDVKGKEVAAIPYKEQLLFR 442
           + +    S+D +++  K V +            P++  A   VK             LF 
Sbjct: 398 DMVVGSDSLDVVTQEVKGVQVQKAQGVTLSTRDPVLSDANLKVK-------------LFN 444

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
              K+   +   ++ L +G   W++++    A ++ L E    VK
Sbjct: 445 NDVKNGDRNASTSIQLANGDVAWIKVRNYHAAGEQTLAEAKPRVK 489


>gi|317485995|ref|ZP_07944850.1| ppic-type ppiase domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922768|gb|EFV43999.1| ppic-type ppiase domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 629

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 94/445 (21%), Positives = 191/445 (42%), Gaps = 41/445 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVPFSSFINS 59
           ML++IR  +++W  KI   ++ + F+ WG+        G STV+ +V  + +    F   
Sbjct: 1   MLDLIRANAQSWGVKIAFGIIILVFVFWGVGGL---TGGPSTVILTVNGEPITIQEFQRK 57

Query: 60  WKQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++Q    + Q++      +++   +++ L ++++ NL+    + Q  + +G+      + 
Sbjct: 58  YEQ----LEQQVRAQYPDLDAAGLKAMQLKQQLIQNLILENLIMQEAKRVGIVVTPVELR 113

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLARE----GINEKEYIDHYTKMLSRTDVV-GMFVGG 171
             I   P FH  + KF  D +V  +  +    G  E E  ++      R DV  G FV  
Sbjct: 114 KLIESFPAFHNAEGKFDPDAYVRVIKAQRNTPGNFEAELRNNMLMNKLRADVTAGAFVPE 173

Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
               +L      R+  E R ++Y+        +     +A +  ++E  + ++  P    
Sbjct: 174 AEVRDLF-----RYEGERRILEYVFYPLEDYTSKVTVDDAQIKDYYEANQASFTVPPQAD 228

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEA------- 283
           + Y+L           IS+  +   YEKN  ++ +PE +R    L+  + K +       
Sbjct: 229 VEYLLIGAEALAAAQNISDAAVSEYYEKNAAQFATPEMVRARHILILSDAKASAEDQAKA 288

Query: 284 ----DEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAK 334
               +E  + +K G+ F ++A    E+ G       LG F+  + +P+   A   F+L  
Sbjct: 289 KAKIEEIAKRIKAGEDFGEVAKEVSEDPGSGPQGGELGWFAHGQMVPEFDKAS--FAL-N 345

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G+ +  +   FG+ +  +   K +      EVK  I  ++   +AS KV+E  ++++  
Sbjct: 346 PGELSEPVKTQFGWHLIQLEEKKAAGQKPLDEVKDQIRTRLAQDEASGKVQEALEQVQLA 405

Query: 395 LALGTSMDEISRREKIVSIDLPLVD 419
           +  G S+ E     K+   +  LV+
Sbjct: 406 VIGGKSLKEAGEPLKLAPQETGLVN 430


>gi|302383248|ref|YP_003819071.1| rotamase family protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302193876|gb|ADL01448.1| rotamase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 638

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 121/585 (20%), Positives = 229/585 (39%), Gaps = 56/585 (9%)

Query: 1   MLEIIRKASRT-WVAKIFLVVLFVPFLIWGLSDA-LFSVSGSSTVVSVGRQKVPFSSFIN 58
           M+ + R  +++ W A +F V+L + FL+ G S   +FS  G   +V+ G + V    F  
Sbjct: 1   MISLFRAFAKSKWAAGLF-VLLILSFLVVGGSQTDIFSSLGPKHIVTAGDRSVDALQFRT 59

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            +++    + ++ G  V +E      +  + L+   +      +    G+      V   
Sbjct: 60  EFERVRTGMQEQAGRPVTNEDLVKENVHVRYLEGQTNRLGFLDWAYKAGIRVSEELVLTR 119

Query: 119 IARSPLFHGK-DNKFSHDVFVSRLAREGIN----EKEYID-----HYTKMLSRTDVVGMF 168
           I   P F  +   +F    +   LA + +     E E+ D     HY   +         
Sbjct: 120 IREIPAFFNQVTGQFDQAQYEQALAAQNVTPVMLEDEFRDTAVSQHYGTAIQ-------- 171

Query: 169 VGGMRPSN----LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
             G+R       LL  QA    F+ R   +  +          P++A LT +  +     
Sbjct: 172 -AGLRTPRIYGALLAGQA----FQVRDGRWFEVTQAMAGTTPAPTDAQLTAFINENAAQL 226

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
           R PE++  + +LF+         I    +   +   K+   +PE RT   L    Q  AD
Sbjct: 227 RRPEFRIATVLLFNDAPGFTPPAIPEARVVERFNFRKDALSTPERRTFTTLTVSTQAAAD 286

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
               +L+ G+    +AE    S+      +  +  +PD ++A ++F LA      P I G
Sbjct: 287 RIAGALRAGQTPQAVAE--ANSIQPAVYDAQPRSALPDPAVATAVFGLAANQVSAP-IQG 343

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
             G+ +A VS I P    +   V++ +  +++      +V   Y R+E +    T    +
Sbjct: 344 RVGFTVAKVSVILPGTPATLDSVREAVTAELQEEDMKARV---YARVEAYEKARTEGKPL 400

Query: 405 SRREKIVS---IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF--GKDDPLSKDHTVALP 459
           +   + V    + LP     G+   G+ + A P   Q  + +   G+ D +         
Sbjct: 401 AAAAEQVGARFVQLPPFTQDGRLPDGQPMNAPPQILQSAYALTKGGESDVIDAGQ----- 455

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            G Y  +++ +  PA    L E+   + + W   + A  +S+KA +L     + G++   
Sbjct: 456 -GQYFVLRLDDIRPAALPTLAEIRGPLAEQWTQRENARRLSTKAEELATRV-RGGQDIAA 513

Query: 520 IGKNLGASLLTTNQINRMDNENKFFG---YDGI-----SQVFSGP 556
           +  + GA+L+    + +        G    +G+      QVF+GP
Sbjct: 514 VAASAGATLINRTGLQQNAETQTALGQGVLEGLFGQARGQVFTGP 558


>gi|319897486|ref|YP_004135683.1| peptidyl-prolyl cis-trans isomerase d [Haemophilus influenzae
           F3031]
 gi|317432992|emb|CBY81363.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           F3031]
          Length = 622

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  FV  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        + +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELEKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  ++  +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400


>gi|301169728|emb|CBW29329.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Haemophilus
           influenzae 10810]
          Length = 622

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  FV  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        + +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  ++  +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400


>gi|145628054|ref|ZP_01783855.1| lipoprotein signal peptidase [Haemophilus influenzae 22.1-21]
 gi|144979829|gb|EDJ89488.1| lipoprotein signal peptidase [Haemophilus influenzae 22.1-21]
          Length = 622

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  FV  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        + +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  ++  +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KAKSLDKISGENGGNLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400


>gi|148653423|ref|YP_001280516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
 gi|148572507|gb|ABQ94566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
          Length = 624

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/422 (20%), Positives = 179/422 (42%), Gaps = 20/422 (4%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF---IN 58
           +E IR   ++W  +IFL++   P +I GL       S  + V  VG Q +  + +   +N
Sbjct: 1   MESIRNFLQSWPGRIFLMLCLSPLVILGLESYFSGASSVNEVAKVGDQTISRAEYQDGLN 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
             + EL      +   V +    +  L+ ++L  L++ A L    + +G+      +   
Sbjct: 61  GRRNEL------LQGGVEASAINTQALNSEVLKGLINRALLRNQTDHLGMHVSDAAINNL 114

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV-GGMRPSNL 177
           + + P +  ++ +FS+D F   L ++GI + +    Y + L+   +        + P + 
Sbjct: 115 LLQDPQYLDENGQFSNDRFAFALQQQGITKDQLFAQYRQQLNLMQLYASVAQTAVYPESQ 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           + D       E R V    L           S+  ++ ++ + K    +     ++Y+  
Sbjct: 175 IHDLLA-LQLETRDVWVYRLPWEQFKDKVSVSDKEISDYYNENKSKLNSRAMVDLAYVSL 233

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEA--DEAFQSLKKGK 294
           D   K    +++  ELQA+Y+  K ++     + V Q LV  ++ EA   +  Q LKKG+
Sbjct: 234 D-PSKLPVEKVTQAELQAQYDDYKARFVGNSKQKVSQILVTGSKAEATMQQIEQRLKKGE 292

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS-----IFSLAKKGDFTPVIHGSFGYV 349
            F  +A+E  +     + G     +  D   AD        S  +KG+ +  +  SFGY 
Sbjct: 293 SFAAIAKELSEDPVSAAKGGDIGTFNADAFGADGQKVAQALSGLEKGEVSAPVKTSFGYQ 352

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           +  V++       S + ++ ++  Q +  K  + + +    + +    G  +++I+++E 
Sbjct: 353 LFKVTDKSGDSVPSLESMRDELTAQAQRQKREQLIADKITSINDMATDGVGIEDIAQQEG 412

Query: 410 IV 411
           + 
Sbjct: 413 LT 414


>gi|260580093|ref|ZP_05847923.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae RdAW]
 gi|260093377|gb|EEW77310.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae RdAW]
          Length = 622

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  FV  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        + +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  ++  +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400


>gi|30995417|ref|NP_439165.2| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae Rd
           KW20]
 gi|3183576|sp|P44092|PPID_HAEIN RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
          Length = 622

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  FV  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        + +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  ++  +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400


>gi|260581919|ref|ZP_05849715.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           NT127]
 gi|260095112|gb|EEW79004.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           NT127]
          Length = 622

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 185/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  FV  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        K +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISKNLQVTDIEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  +   +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400


>gi|323700040|ref|ZP_08111952.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp.
           ND132]
 gi|323459972|gb|EGB15837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           desulfuricans ND132]
          Length = 633

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 121/542 (22%), Positives = 222/542 (40%), Gaps = 68/542 (12%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           MLE++R+ +  W+ KI   ++ + F+  +G+S    + SG  TV +V  Q +  + +  +
Sbjct: 1   MLEVMRENASGWIVKILFAIIIIVFVFAFGMSG--LNSSGDPTVATVNGQAITRAEY-EA 57

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
             Q      ++    +   + RS    + +L  L+S   L      +G+ A    V   I
Sbjct: 58  MYQRAAENLRRTNPDLPPAQTRSPEFKQMVLGELISQKLLLGEAAKLGIRASDKEVAAGI 117

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR---TDVVGMFVGGMRPSN 176
                F   +  F    + + L    +   ++ ++Y + L+     D VG+      P++
Sbjct: 118 GAVDAFKDANGNFDQQRYQTALRDIRMTPGDFEENYRRDLTMEKVKDAVGV------PAD 171

Query: 177 LLLDQAKRFY---FENRSVDYI-VLNN--RHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
           L   QA++ +    E  ++DYI VL    R+   I +     +  +++  +D ++ P   
Sbjct: 172 LSESQARQIFDWLGETAAIDYIEVLPTDFRNEIKIGETE---IEAYYQANQDRFQIPAQV 228

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVF-------PNQKE 282
            +  + F      K   +++DE++A Y  NK+    P ++     LV         +Q++
Sbjct: 229 TLRTLAFTPASLAKFQTVTDDEIKAYYAANKDSLEEPAQVHARHILVAVKESDSQADQEK 288

Query: 283 A----DEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSK-EYIPDVSLADSIFSLAK 334
           A    D+ +Q  K G  F +LA++     S  +   LG F K   IPD   A   F+L K
Sbjct: 289 AKARIDKLYQEAKAGADFAELAKKNSDGPSAPNGGDLGWFGKGAMIPDFEKA--AFALNK 346

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G   PV    FG+ I  V + K   T +F E K +I  ++   KAS++  +   +  + 
Sbjct: 347 GGVSEPV-RTQFGWHIIMVEDKKEGTTKTFDEAKDEIKARLAEEKASDQANDLLDQATDR 405

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           L  G S+ +I+                  ++  + V   P   Q L + FG +   +K  
Sbjct: 406 LVSGMSLTDIA-----------------SELGLETVTTDPMPAQFLGQAFGMNADAAKAV 448

Query: 455 TVALP----------DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
           +   P          +G YM V+  E I      L  V   +    +  K AE    +A 
Sbjct: 449 SGLTPGQAYKSPVAVNGGYMLVEKVEDIAPSIMALNLVRQTIVNTLENQKGAELAGQEAE 508

Query: 505 QL 506
           ++
Sbjct: 509 KI 510


>gi|21672727|ref|NP_660794.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008943|sp|Q8K987|PPID_BUCAP RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
 gi|21623371|gb|AAM68005.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 621

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 107/531 (20%), Positives = 247/531 (46%), Gaps = 44/531 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSS----F 56
           M++ ++      + K  L ++ +  L++G  +  F+   +  +  V  +++ F +    +
Sbjct: 1   MIKYLKSRLNIIIVKCILGIIILS-LVFGTINNYFNRDTTRYIAKVNGEEISFITLQKMY 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           I+  K++  ++ Q    +  +++ +    +  IL  L++   L+Q+ + +        + 
Sbjct: 60  IDERKKQEKILGQDFEKIKKNKKFKEETYNY-ILSQLINNILLEQYTKRMNFNIQDNEIK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P+F  ++N+F+   +++ L+ + +   EY+    K L+ T      +  +  ++
Sbjct: 119 KIIFNIPIFQ-ENNEFNKKKYLNYLSSKNLTHYEYVSLIRKKLNTT----YLINAISETD 173

Query: 177 LLLDQAKR----FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            +LD  ++       E R +   ++    +      +   +  +F+++K+ +  PE  +I
Sbjct: 174 FILDNEQKKIIKLLSEKRIIKKAIIKINPIINNQKVTEKEINNYFDQHKNEFYTPEKFKI 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SYI   +   + KI+ SN+E++  Y+KN +KY + E R    +    + EA      LKK
Sbjct: 234 SYI--QLKPNKFKIQCSNEEIKNWYKKNIDKYSNQERRQYSIIQTKTKNEALSILSELKK 291

Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGS 345
           G+ F ++A+E  KS+   S      +G  +K ++P+ + +A+    L K    + +I  +
Sbjct: 292 GEDFSKIAKE--KSIDPFSSEQGGNIGWITKNFVPNEIKIAN----LEKIDQISNIIKFN 345

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
             ++I  ++ I P       EV   I N+++  K+       YK+L++ +A+  +   I+
Sbjct: 346 NNFLIIKLNKILPKKYKKISEVSDLIENEIKYQKSL----NTYKKLKDKIAI-IAKKNIN 400

Query: 406 RREKIVSID--LPL-VDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHT--VAL 458
           R + I+     LP   ++  KD   KE+   P  ++++F+  +  +   L K H+  + L
Sbjct: 401 RFDLILKKTNILPKETNWFDKDSVPKELQN-PILKKIIFKKGLLDRQKKL-KSHSGLIVL 458

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
            D     + IK     R +KL+++  ++    K +K  E+  +K  +++ +
Sbjct: 459 NDHQSFLLSIKNFQKKRIKKLKDIKRNIVNKLKYIKAVEKTKNKLKKILFQ 509


>gi|145640678|ref|ZP_01796261.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021]
 gi|145274604|gb|EDK14467.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae
           22.4-21]
          Length = 622

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  FV  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        + +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  ++  +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKSFEDSKSL 400


>gi|257093852|ref|YP_003167493.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046376|gb|ACV35564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 635

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 109/530 (20%), Positives = 228/530 (43%), Gaps = 44/530 (8%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINSWKQELGMISQKI 71
           V ++FL ++ +PF  WG+ D+    SG+ T + SVG  K+    F  +W+ +   + Q +
Sbjct: 12  VVQVFLALITLPFAFWGV-DSYVRNSGAGTDLASVGDSKITRPQFDQAWRVQQDRMRQVL 70

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS-----PLFH 126
           G     E   +      +L++LV     DQ +  I    D   V  ++ R      P   
Sbjct: 71  GANFRPESMNTPEAKLAVLNSLV-----DQRLLLIEAAKDRLAVGDDLLREVIGKIPALQ 125

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
            ++ +FS   + + LA +G+++ ++     + L+   +V         S    D   R  
Sbjct: 126 -ENGQFSLARYRAVLAAQGMSQSQFEAQVRQDLTLQQLVAAIGDTGIASTTTADAMLRIQ 184

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            E R V  +  +            A + ++++   + +   E  +  +++  +    +K 
Sbjct: 185 SEERQVAELRFSPDQFLERVQVDPAAVRKFYDDNANRFEIAEQAKAEFVVLSLDGLLEKA 244

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPN--------QKEADEAFQSLKKGK-KF 296
           ++S+ E+   YE +K++Y  PE R     L+  N        + +A+E  + ++K   +F
Sbjct: 245 KVSDAEVTGWYESHKDRYQQPEERRASHILILANADVDREKARAKAEEVLKEIQKSPGRF 304

Query: 297 IQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            +LA++     G +     LG F +  +   +  D++F  A++ + + ++   FGY I  
Sbjct: 305 AELAKQHSQDPGSAEKGGDLGFFGRGMMVK-AFEDTVFK-AQENEVSGLVQSEFGYHIIK 362

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL-ALGTSMDEISRREKIV 411
           V+ IK     +  +V+ +I  +++   AS +  E  +     +     S+   + R K+ 
Sbjct: 363 VTGIKVGTQRALVDVRPEIEAELKRQAASRQFAEAAEAFSNLVYEQPDSLQPAADRFKVT 422

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQL-----LFRVFGKDDPLSKDHT--VALPDGSYM 464
                 +  +G   +   V A+P   QL     L  +F +D   ++ +T  V +   + +
Sbjct: 423 ------IQQSGWLPRNPPVEALPALGQLNSPKVLAALFSEDSLKNRRNTEAVEIAPNTLL 476

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
             ++ E  PA  R  + V T+++   KT + A  ++ KA +  L   ++G
Sbjct: 477 AARVIEHRPATVRPFDTVKTEIEASLKT-QEAAALARKAGEAQLGQLQQG 525


>gi|329123025|ref|ZP_08251596.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC
           11116]
 gi|327471956|gb|EGF17396.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC
           11116]
          Length = 622

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  FV  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        + +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  ++  +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKFL 400


>gi|152995753|ref|YP_001340588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
           MWYL1]
 gi|150836677|gb|ABR70653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
           MWYL1]
          Length = 607

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 125/580 (21%), Positives = 242/580 (41%), Gaps = 51/580 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+  V KI +  + V F ++G+   + S + S TV  V    +  +  +   
Sbjct: 1   MLQDIRDKSQGIVVKIIVGFIVVTFALFGVDALVTSFNSSDTVAEVDGVDITRTQMLQGA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   +   +G  VN        L ++ LD LV    L    + +GL     +V   + 
Sbjct: 61  ETQRRQLISMMGGQVNPALLEDNLLQRRALDELVQRVVLANQAKGLGLGVSDAQVNAYLL 120

Query: 121 RSPLF--HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDVVGM-FVGGMRPSN 176
           ++  F  +G+ ++  +  F+  L    +  KE I     +   R  + G  FV   +   
Sbjct: 121 QAEQFQTNGQFDQNKYLNFIRSLGFTPLAFKERIKQDVLIQQPRNAIAGSEFVLPYQ--- 177

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +D   +   + R+ DY+  +          S+  L  ++E  K+N++ PE  +++Y++
Sbjct: 178 --VDSVSKLQSQERTYDYVSFSLADESENTSVSDDELKAYYEANKENFKTPEQVKVNYVV 235

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ-------S 289
               +   K++I++ ELQ  Y+ +       E      L+  + +  DEA +        
Sbjct: 236 ISSSDFYGKVKITDAELQDAYQASISVLAQEERSASHILIETSDRSDDEAKKRLEEVEAK 295

Query: 290 LKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           LK G KF  LA    ++ G +    +LG + ++ I   +  D++FS+ KKG+   V  G 
Sbjct: 296 LKAGAKFADLAAKYSDDIGSNKDGGNLG-YVEKGIMGSAFDDTLFSM-KKGEVKSV-KGQ 352

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           +GY +  + +I      SF   K+++  ++R  KA + +   ++ + +       +D I+
Sbjct: 353 YGYHLIKLDDISKPDVPSFASKKEELLQKLREDKARDALLTAHEDITDLAYASDKLDAIA 412

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD-------PLSKDHTVAL 458
           +      +D+    + G+D    E+ + P      F V   +D        L  D  V L
Sbjct: 413 KE---YGVDVLQSAYFGRDGGSDEITSSPAVIAAAFGVSVLEDGQNSNLIELGDDQVVVL 469

Query: 459 ------PDGSYMWVQIKE---SIPARDRKLEEVLTDVKK-------DWKTVKTAEEVSSK 502
                 P+    + + KE   SI  +++ +E +    +K        W +VK A+    +
Sbjct: 470 HLNDHKPEAFQSYEETKEQVASIVVQNKAVESLRAKAEKAKSASNTKWTSVKDAKRGQDE 529

Query: 503 ANQLVLEYSK-EGKNFRDIGKNLGASLLTTNQINRMDNEN 541
              L       EGK   ++ K L    L   ++N++D  N
Sbjct: 530 MTSLAFSLPHPEGKPVIEV-KGLSNGDLALIRLNKVDAGN 568


>gi|145637308|ref|ZP_01792969.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae PittHH]
 gi|145269560|gb|EDK09502.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae PittHH]
          Length = 622

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  FV  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIINLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        + +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  ++  +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKSFEDSKSL 400


>gi|319775064|ref|YP_004137552.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           F3047]
 gi|317449655|emb|CBY85861.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           F3047]
          Length = 622

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  FV  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        + +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  ++  +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKFL 400


>gi|167855404|ref|ZP_02478170.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis 29755]
 gi|167853470|gb|EDS24718.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis 29755]
          Length = 624

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 154/352 (43%), Gaps = 39/352 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + S  WV KI   ++ + F++ G+   L +   S  V  V  +++    F  + 
Sbjct: 1   MIEKMHEKSGGWVFKIIFALVSLSFVLGGIGGGLMATDNS--VAKVNGEEISQQVFSRAK 58

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            Q+  +++ ++G      + N    +     + IL+ LV    L Q+ + + ++    ++
Sbjct: 59  NQQQNILNAQLGERFWDLMDNPIYVKQ--FHESILNGLVDDELLRQYAKSLKIDVSADQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  SP F  +D KF+++++   L   G+      D Y  ++      GM    ++ +
Sbjct: 117 KSEIVNSPAFQ-QDGKFNNNLYQQALRNNGLT----ADGYAAIVYE----GMLFAQIQEA 167

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVP----AIA------DPSNAVLTQWFEKYKDNYR 225
             +++ +     +   +  ++L  R V     +IA        S   +  ++E  K N+ 
Sbjct: 168 --IVNSSFTVPAQQELLAKLLLQKRQVRLATYSIAKEVNNQTASTEEMQAYYEANKANFV 225

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
            PE   + YI  +  +   KI+++N+++   Y+ NK KY +     +  +    + EA+E
Sbjct: 226 NPEKLTVEYISIEPKDLANKIQVTNEQIDTYYQTNKAKYTTKGEAKIAHIQVATEAEANE 285

Query: 286 AFQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADS 328
             Q+L KG+ F QLA+          QG  L     G F K +    ++ D+
Sbjct: 286 IVQALAKGEDFAQLAKAKSQDKLSAAQGGDLGWAKAGVFPKAFEDAANMLDA 337


>gi|118581468|ref|YP_902718.1| hypothetical protein Ppro_3065 [Pelobacter propionicus DSM 2379]
 gi|118504178|gb|ABL00661.1| conserved hypothetical protein [Pelobacter propionicus DSM 2379]
          Length = 527

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 111/245 (45%), Gaps = 12/245 (4%)

Query: 25  FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
           FL+WG        S  +    V R K+    F N++++   +  Q  G  +  E  +++G
Sbjct: 30  FLVWGKGSDGSGSS-MAYAAKVNRHKISLEEFQNAYQRMRNIYQQIYGQSLTPEIEKTLG 88

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
           L K  L++L+  A + +  + +G+ A    V G IA  P+F  KD  FS D++   L   
Sbjct: 89  LKKAALNSLIDTALILKEAKKMGITASKDEVSGAIAAMPMFQ-KDGVFSFDLYQQLLKSN 147

Query: 145 GINEKEYIDHYTKML----SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            I  KE+ +   + L    +R  ++  + V      +L   +  R   E     Y+    
Sbjct: 148 RITAKEFEEAQQRELILKKTRQAIINKVAVSDQEALDLFRKENDRIELE-----YLSYGP 202

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
             V     P+ A L ++ +K +D +R  E   ISY+L D   +  +  ++ DE+Q  Y+K
Sbjct: 203 ADVMGEIRPTEAELKEFLQKNQDRFRTAEKAEISYVLIDPASQAARQSLTEDEIQTFYQK 262

Query: 260 NKEKY 264
           N +++
Sbjct: 263 NIDRW 267


>gi|308050304|ref|YP_003913870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica
           DSM 9799]
 gi|307632494|gb|ADN76796.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica
           DSM 9799]
          Length = 624

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 175/396 (44%), Gaps = 26/396 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFI 57
           MLE IR+ S+   AKI L  + + F + G+    +S  G+++      V  +++      
Sbjct: 1   MLEKIREGSQGVAAKIILGAVILSFALTGV----YSYLGTNSEMLAAEVNGEEITRYDLD 56

Query: 58  NSWKQELGMISQKIGFVVNSERARSV---GLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +++ E   +  ++G + +S  A      GL + +LD L++   +DQ + D+GL     +
Sbjct: 57  QAFQNEQARMRAQLGEMFDSLSADPTYMAGLRQSVLDRLIAERLIDQKVADLGLRVSDDQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   I   P F   D KF +  + + L +  ++  +  D   + +SR  +V   +G    
Sbjct: 117 IQQAIVAMPEFQ-VDGKFDNARYQAVLRQNNLSGVQLRDMLRRDMSRQQLVVGLLGSEFV 175

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           ++           + R + Y++++     A  + S++ ++ +++  +  +  PE   + Y
Sbjct: 176 TDAEAQALTALQQQTRDLRYLLVSQADYNAGIEVSDSEISDFYQANQARFATPEEVSVEY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           +   V +    + ++++E +A Y+     Y  PE R    ++F    E D+A    +   
Sbjct: 236 VELAVSDLAGDVSVTDEEAKAFYDSQANAYQQPERRLAAHMLF----EGDDAQARAEAAL 291

Query: 295 KFIQLAEEQGKSLSDISLGSFSKE-------YIP---DVSLADSIFSLAKKGDFTPVIHG 344
             ++  E      ++ S  +F+ E         P   + +   ++F+L ++G+ + VI  
Sbjct: 292 ARVRAGEAFAAVAAEASDDTFTAENGGELDWMTPGQMEPAFDAALFAL-QEGETSDVIKT 350

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
            +GY I +   I+ +    F EVK  I   ++  KA
Sbjct: 351 EYGYQIVNAKKIEAATQRPFDEVKASIIATLQADKA 386


>gi|242277701|ref|YP_002989830.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           salexigens DSM 2638]
 gi|242120595|gb|ACS78291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           salexigens DSM 2638]
          Length = 633

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 110/542 (20%), Positives = 228/542 (42%), Gaps = 54/542 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++I+R+ +++W  KI   ++   F I+      F+ +    +  V  Q VP   F+  +
Sbjct: 1   MMDILRQNAQSWGIKIAFGIIIAVF-IFAFGAGGFNGNTDPVIAYVNDQPVPTQEFMQVY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++    +  +    ++S++ +S    K +L+ LVS   L+   E +GL   +  +   I+
Sbjct: 60  RETAEALRAQ-NPNLDSDQLQSPEFKKAVLEQLVSQKLLEAEAEKLGLSVSNSELSYSIS 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY--TKMLSR-TDVVGMFVGGMRP-SN 176
           + P F  KD KF  +++ + L    ++   + +    + ++S+  + V M V      + 
Sbjct: 119 KIPAFADKDGKFDMNLYQAFLQSRAMSAATFENDMRNSALISKLQEYVTMPVKPTEADAR 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L D A     E   +DY  ++          S+  +  +++   D +  P    + YI 
Sbjct: 179 ALFDSAA----EKVQIDYYYVSGADFVKNIKISDKQIEDFYKANPDKFTIPARSVVKYIA 234

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKY------------FSPEIRTVEQLVFPNQKEAD 284
           F   E      ++ +E++A YE NKE +             + +    ++ V   +K+  
Sbjct: 235 FTPEELSINETVTPEEIKAYYEANKETFQQEAQVNARHILITVDENASDKDVAAAEKKIK 294

Query: 285 EAFQSLKKGKKFIQLAEE--QGKSLSDIS-LGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           +     K G+ F +LA++  +G S S    LG F +  +      ++ F+L KKG+ +  
Sbjct: 295 KVLAKAKSGQDFGKLAKKYSEGPSSSKGGELGWFGRGAMVK-PFEEAAFAL-KKGEISEP 352

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +   FG+ +  + +++ +      +VK +I + +   KA++ + +      + LA G  +
Sbjct: 353 VRTRFGWHLIKIDDVREAGQKDIDQVKDEINSLIAQEKAADSITDKLDHAIDLLASGMKL 412

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD-------PLSKDH 454
           D++S    I               K  E A +    + L R FG  +        L K +
Sbjct: 413 DKVSEELGIA-------------FKKSEQATV----ENLSRAFGMTESAAQTIIALPKGN 455

Query: 455 TVALP---DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
              +P   DG Y+ V+ +  +P     L++   D++      +      +KA  L+ + S
Sbjct: 456 ATDMPVAIDGGYILVEKEADVPPSLSPLKDQKQDIESFLSQQQAMNLAKAKALALMGQLS 515

Query: 512 KE 513
            E
Sbjct: 516 NE 517


>gi|183601065|ref|ZP_02962558.1| hypothetical protein PROSTU_04689 [Providencia stuartii ATCC 25827]
 gi|188019406|gb|EDU57446.1| hypothetical protein PROSTU_04689 [Providencia stuartii ATCC 25827]
          Length = 618

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 96/434 (22%), Positives = 186/434 (42%), Gaps = 36/434 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59
           M++ +R  + +   K+ L ++ + F++ G+  A + + GSS     V  Q +    F  +
Sbjct: 1   MMDNLRTKANSPFIKVLLAIIILSFVLTGV--AGYMIGGSSNDAAKVNGQSISREQFQTA 58

Query: 60  WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
           + QE   +   +G        N E  +   L  ++L+NL++   + ++  ++ L A   +
Sbjct: 59  FSQERQSLQDSLGDKFSEIAGNEESMKF--LRNQVLNNLINSTLMAEYANELNLSASDQQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V   I   P+F   + KF  D +   LA    +     D+  + +    ++         
Sbjct: 117 VKDAIFEMPVFQ-TNGKFDGDKYRQILAANNYS----ADNLAEQVRANLILSQLSDSFIK 171

Query: 175 SNLLLDQAKRFYFE----NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
           ++  L    + Y E     R +    L+     A    +   +  ++   +D++ APE  
Sbjct: 172 TDFALPSEVKTYAELVLQEREIRVATLSLADEQAKQTATEDEIKAYYNANQDSFIAPEKV 231

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           ++SY+  D      +  ++++E++  YE+N + Y   E +    +   ++KEA+     L
Sbjct: 232 QVSYVEIDAAALPPQ-SVTDEEVKTYYEQNLKNYTQAEQKHYSMIQVASEKEANAIIDEL 290

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIF--SLAKKGDFTPVIHGSFG 347
           K G  F+ LA E  KS   +S G+     ++ + S    I   +L +KG  +  I     
Sbjct: 291 KAGADFVALATE--KSTDKLSAGNKGIIGWMEEASTPSEIVNANLTEKGQISTPIKSDSN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-------EKVKEDYKRLEEFLALGTS 400
           +VI  + +IKP        VK +I N++   K S       +KV E      E LA   S
Sbjct: 349 FVIFRLDDIKPESIKPLDSVKDEIKNKLIQDKNSKQFYDLQQKVSEAATNDNESLA---S 405

Query: 401 MDEISRREKIVSID 414
           ++E+S   K+V+ D
Sbjct: 406 VEEVSGL-KVVATD 418


>gi|91783524|ref|YP_558730.1| putative PpiC-type peptidyl-prolyl cis- trans isomerase
           [Burkholderia xenovorans LB400]
 gi|91687478|gb|ABE30678.1| Putative PpiC-type peptidyl-prolyl cis- trans isomerase
           [Burkholderia xenovorans LB400]
          Length = 645

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 169/409 (41%), Gaps = 25/409 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +    L+++ VP L + G+         S+ V SV   K+  + + ++
Sbjct: 1   MLDFFRNHKRLMM--FMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q+L    Q +G   + +   +     ++LD L+    L    + + L A    V   +
Sbjct: 59  MRQQLDRARQMLGAQFDMKSFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVL 118

Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D     D +   LA +G+   +Y +     ++   +     G    S 
Sbjct: 119 LNDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L         + R V  I  + R   A   P++A L  +++ +++++  P    I Y++
Sbjct: 179 TLAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVFP-----------NQKEAD 284
                    ++  + +L+  Y+ N   Y    ++R    L+              +++A+
Sbjct: 239 MSPATLAASVQPGDADLKKYYDDNIAHYRVEGQVRASHILIAAPKDASAADKAKAKQKAE 298

Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSDIS----LGSFSKEYIPD-VSLADSIFSLAKKGDF 338
           E    +K    +F Q+A++  +     S    LG F +  I    +  D++F+L KK + 
Sbjct: 299 ELLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEV 357

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           + ++   FGY I  V+++KP+ T  F EVK  I+  ++   AS+   +D
Sbjct: 358 SGIVQTDFGYHIVKVTDVKPAVTKPFDEVKDQISKDLKTQLASKAFTDD 406


>gi|239814796|ref|YP_002943706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           S110]
 gi|239801373|gb|ACS18440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           S110]
          Length = 636

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 177/422 (41%), Gaps = 66/422 (15%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGR---QKVPFSSF 56
           M +  RK ++  +  IFL +L +P F+++G+        GS   V V R   Q +     
Sbjct: 1   MFDFFRKYNK--IVMIFLFLLIIPSFVLFGVE----RYQGSGGEVKVARVDGQNITRPE- 53

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILD-NLVSGATLDQFIEDIGLEADHG-- 113
              W  +  + + +I       R +S  +D  +L+ +++  ATL++ + D  L A     
Sbjct: 54  ---WDAQHRLETDRI-------RQQSPNVDPTLLESDVMRYATLERMVRDRVLAAAAAKS 103

Query: 114 ----------RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
                     R++ +      F   D KF  + F     R    E+       ++ ++  
Sbjct: 104 NVTISEERLSRIFAQDTGLAAFRTPDGKFDRESFQRVTGR--TPEQYEASMRAELATQQM 161

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++G+      P  L       FY + R +     +     +    S+A +  +++ +   
Sbjct: 162 LLGVTGTAFTPPALAAATINAFY-DRREIQVARFSPESFASKVTVSDADVEAYYKAHTAQ 220

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------- 275
           ++APE   I Y++ D+   +K I ++  +L+  YE+N  ++ + E R    +        
Sbjct: 221 FQAPEQASIEYLVLDLEAAKKNISVNEADLKTYYEQNTARFGTKEERRASHILITAPASA 280

Query: 276 --------------VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
                         +    K+A   F  + +       + E+G  L  ++ G+  K +  
Sbjct: 281 PAADRAKAKAKAEQLLAEVKKAPATFADVARKNSQDPGSAEKGGDLDFVTRGAMVKPF-- 338

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                D++F+L KKGD + V+   FGY I  +++IKP+    F++V+  I N++R  +A+
Sbjct: 339 ----EDALFAL-KKGDISDVVETEFGYHIIRLADIKPAVVPPFEQVRATIENEVRSQQAT 393

Query: 382 EK 383
           ++
Sbjct: 394 QE 395


>gi|283953940|ref|ZP_06371469.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794545|gb|EFC33285.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 496

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 169/373 (45%), Gaps = 40/373 (10%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     FL WG  D  F+++ SS+V +VG +K+ FS F   ++Q L   +Q  
Sbjct: 17  WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKISFSEFDTRYRQILSYYNQIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +  E A  +G++   L +LV    L  F +D+G++A+   +  ++A +  F      
Sbjct: 73  NGALTPENAEQLGIENIALSSLVEDKLLLNFAKDLGVDANENEILQKLANTREFQDPTGD 132

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG----MFVGGMRPSNLLLDQAKRFYF 187
           F+  ++   L    +  K+Y       L+   +VG    +F    +   L +  +  F  
Sbjct: 133 FNKTIYYELLNVNNLTPKDY----ETQLANEVIVGKLDHIFNIPNKDEELKMLASSYFMR 188

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS-YILFDVHEKEKKI 246
           +  S+  I  + +++    +     L + + ++K++Y+  +   IS Y L   +EK    
Sbjct: 189 DALSIAKIDYDKKNIKINEED----LKKLWSEHKEDYKTKKMYEISTYFLPSSNEK---- 240

Query: 247 EISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEE 302
            I + EL+  Y  ++NK KY     + ++     N+   D A   LK     KF+ L  +
Sbjct: 241 -IDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKSVANAKFLDL--K 297

Query: 303 QGKSLSDISLGSFSKEYI---PDVSLADSIFSLAKKGD-FTPVIHGSFGYVIAHVSNIKP 358
            GK        SF K++     DV     + + AK GD   PV++ + GY+I  ++ + P
Sbjct: 298 NGKD-------SFQKDHNISESDVYYPIDLLNKAKNGDVLRPVLYNN-GYIIVKLNKVDP 349

Query: 359 SFTVSFQEVKKDI 371
               +F+E + ++
Sbjct: 350 IRNKTFEEARDEV 362


>gi|237746606|ref|ZP_04577086.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS]
 gi|229377957|gb|EEO28048.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS]
          Length = 647

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 170/406 (41%), Gaps = 24/406 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR   R  + +I L+V  +P  I+   +          V  V  + +    + N+ 
Sbjct: 1   MLDFIRSHKR--LTQIILLVFIIPSFIFVGVEGYKRFGDGDAVAKVNGKAITQQEWDNAQ 58

Query: 61  KQELGMISQKI---GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     Q+    G   +S+   S      +L NL++   L   +    L      V  
Sbjct: 59  REQAERFRQRAAVQGQPFDSKWIESSQFKWAVLQNLINRRVLLATLNKEHLTVPEQVVLQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           +I   P   G D K +   +   LA +G+N   +    T+ ++   +             
Sbjct: 119 KIREIPGLIGPDGKLNEARYKEVLAAQGLNPDMHFALMTQDMAMQQIAAPIEFSAFEPKA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           ++ +    + + R V  +V +          +   LT ++  ++  +  PE+  +  ++ 
Sbjct: 179 VVTRVWNLFEQERDVQRLVFDAGAYRNKVSVTEDDLTAFYRAHEAQFTIPEHADVEVVVL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286
           D+   EK ++IS+ +LQ+ YE+N++++  PE R  + ++    K A ++           
Sbjct: 239 DMPTVEKNVKISDADLQSYYEQNRDRFSIPEERRAQHILIAVAKNASDSEKAEAKKKAEE 298

Query: 287 --FQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
              Q      +F +LA    ++ G + +   LG F++  +      D++F + KKG+ + 
Sbjct: 299 LLAQLKADPSRFAELAKAHSQDPGSARNGGDLGFFTRGKMVK-PFNDAVFGM-KKGEISD 356

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            +   FGY +  V++IKP+      +VK  +  +++  + S+K  E
Sbjct: 357 PVQTDFGYHLIAVTDIKPAVAKPLSQVKDSVLQELKRQETSKKFAE 402


>gi|77918655|ref|YP_356470.1| peptidyl-prolyl cis-trans isomerase [Pelobacter carbinolicus DSM
           2380]
 gi|77544738|gb|ABA88300.1| peptidyl-prolyl cis-trans isomerase [Pelobacter carbinolicus DSM
           2380]
          Length = 649

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 145/685 (21%), Positives = 281/685 (41%), Gaps = 92/685 (13%)

Query: 1   MLEIIRKASRTWVAKIF---LVVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML++IRK  R+ + KI    ++  FV   FL+WG  ++     GS+ +  V    + +  
Sbjct: 1   MLDLIRKKQRSVLVKIVFWTIIAAFVGTIFLVWGKGNSGSGGDGSA-IAHVNGDAISYQD 59

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F  +++     + ++ G  +  E  + + L+ +  + LV+   L Q  ++  +  D   +
Sbjct: 60  FQITYQNMRQEMEKRFGRSLPPEIEKQLQLNTQAYEQLVNRLLLLQEADNRDIAVDKDEL 119

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              IA  P F  KD +F    +   LA + +  + +  +  + L    ++G  V  ++  
Sbjct: 120 RQAIADIPAFQ-KDGQFDRKRYQEVLAYQHLTSRAFERNMREQL----LLGKVVEAIKQD 174

Query: 176 NLLLDQAKRFYFENRS----VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
             + DQ     + NR+    + ++ L      +    ++  L  +F++ ++++R PE   
Sbjct: 175 AEVTDQDIDHEYRNRNEKIDLAFVKLAPGRYESKVTVTDEALQAYFQENREDFRQPEKIA 234

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PN 279
           + ++ FD     K I + +  +Q  Y+K+K++Y+  E      ++F              
Sbjct: 235 LRFVRFDPDNVAKDISVDDAAIQDYYDKHKDQYWVEEQVKASHILFRITAGLDEDGRQKK 294

Query: 280 QKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAK 334
           +  A +  +  + GK F QLA    ++ G ++   +LG F+    +PD    +  F+L K
Sbjct: 295 RAAAQKVLEQARAGKDFAQLARTHSDDAGSAIKGGALGYFTHGSMVPD--FENVAFAL-K 351

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G  + ++  S GY I        + T    +V+ D+   +R     E  ++D       
Sbjct: 352 PGQISDLVETSMGYHIIKCEGRIEAQTKPLDDVRDDVRANLR----KELARQD------- 400

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV------FGKDD 448
            AL  +M   S   +   ID      A     G +V     +E  LF         G DD
Sbjct: 401 -ALDKAMMAYSAHRQDGDID------AAASANGLQV-----RETGLFSRGEAIDGLGSDD 448

Query: 449 PLS------KDHTVALP---DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
            LS      K+  +A P   D   +   +KE   +   +L+E   +V++ ++  ++   +
Sbjct: 449 ELSMAAFALKEGELARPIVRDQGVLTFVVKERHASYIPELKEARAEVERAYRRQESV-GL 507

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-SGPVE 558
           + +A + VL   K GK   D+ +     +  T    R  +   F    G S+   +    
Sbjct: 508 ARQAAEAVLAELKAGKKLADVARKEKVEMGETGLFPR--SYGNFIPRIGSSEALATAGFA 565

Query: 559 MVKCFPIENGLSYVV------------FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
           + K  P+ + + YV+             +   +K+     +    S LT    K LL  +
Sbjct: 566 LTKEAPVADEV-YVIDGRFVVATLMHRMEADPAKLTDAAREQLRTSVLTNKREK-LLTEL 623

Query: 607 IAYLKSQYSVTVHDNLIQRYLDGEK 631
           +  LKS+  + V   L Q  L+GEK
Sbjct: 624 VEKLKSEAKIKVEPTL-QNILEGEK 647


>gi|307729660|ref|YP_003906884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
 gi|307584195|gb|ADN57593.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
          Length = 646

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/409 (20%), Positives = 171/409 (41%), Gaps = 25/409 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +    L+++ VP L + G+         S+ V SV   K+    + N+
Sbjct: 1   MLDFFRNHKRLMM--FMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRVEYDNA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q+L    Q +G   + +   +     ++LD L+    L    + + L A    V   +
Sbjct: 59  MRQQLDRARQMLGAQFDIKAFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVL 118

Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D     + +   LA +G+   +Y +     ++  ++     G    S 
Sbjct: 119 LNDPVISSLKKPDGSIDVERYKQLLAMQGMTPDQYDERVRYSIATQELPASIQGSAFTSK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L         + R V  I  + R   A   P++A L  +++ +++++  P    I Y++
Sbjct: 179 TLAQHLTELAEQQREVQGIAFHPRDYAAKIQPTDAQLQAYYDAHRNDFATPATATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFP-----------NQKEAD 284
                    ++ S  +L+  Y++N   Y +  ++R    L+              +++A+
Sbjct: 239 MSPATLAASVQPSEADLKKYYDENIAHYRTEGQVRASHILIAAPKDASAADKAKAKQKAE 298

Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSDIS----LGSFSKEYIPD-VSLADSIFSLAKKGDF 338
           E    +K    +F Q+A++  +     S    LG F +  I    +  D++F+L KK + 
Sbjct: 299 ELLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEV 357

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           + ++   FGY I   +++KP+ T  F EVK+ IA  ++   AS+   +D
Sbjct: 358 SGIVQTDFGYHIIKATDVKPAVTRPFDEVKEQIARDLKTQLASKAFSDD 406


>gi|30250138|ref|NP_842208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
 gi|30139245|emb|CAD86118.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
          Length = 630

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/391 (16%), Positives = 169/391 (43%), Gaps = 21/391 (5%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           V +I L++  +PF+ WG+ ++  S   +     V  +++    +  + + +   +   +G
Sbjct: 11  VVQIVLLIAVLPFMFWGV-ESYRSAGDAGYAAVVDGEEISRQEYEQAIRNQQENLRNMLG 69

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
              ++    +  +   +L+NL+    L +  E +GL     R+  EI     FH +D KF
Sbjct: 70  EKFDASLLDNPQMRLAVLENLIQERLLRREAERVGLTVLDSRLTAEIQNISFFH-EDEKF 128

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           S+  +   L R+G++   +       L R  ++    G +     +  +          +
Sbjct: 129 SYQRYRDLLQRQGMSPAMFEARVAGELMRQQLLEGITGSVIVPRTVAGKVASLSATMYEI 188

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
           + + ++       A+P  A +  +++ +  ++  PE  ++ Y++  + E  ++ +IS++E
Sbjct: 189 NRMTISPEQYIDQAEPDEAAIQSYYDSHYQDFTLPERVKVEYVVLSLDELARQEQISDEE 248

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK----------------- 295
           ++  Y+++++++   E R    ++     +A E  ++  K +                  
Sbjct: 249 IRKYYDEHQDEFGQAEERRASHILLSVPADATEEQKTSTKARAEQILEQVRQDPEKLPEL 308

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
             +L+E+ G +     LG F++  +      D +F + ++G+    +   FG+ I  ++ 
Sbjct: 309 AAELSEDPGSAKEGGDLGFFARGLMVK-PFEDEVFQM-QRGEIRGPVETPFGFHIIRLTE 366

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +K +      +VK+ I   ++  K +++  E
Sbjct: 367 VKGADVAGLDDVKEQIRQLLQHQKVADRFGE 397


>gi|297538717|ref|YP_003674486.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
           301]
 gi|297258064|gb|ADI29909.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
           301]
          Length = 633

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 96/422 (22%), Positives = 177/422 (41%), Gaps = 67/422 (15%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++ WV K  L ++ +PF ++G+   L S   +  V  VG   +   ++ N+ 
Sbjct: 1   MLDQIRTVAQGWVGKALLALITIPFALFGIDSYLSSAGNNVAVAKVGGNSISVQAYDNAL 60

Query: 61  KQELGMISQKIGFVVNSERAR--SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           K     +  +  F    E+A+  S  +   +LD L++   L   I +        ++   
Sbjct: 61  KNMRNRLQSEGKF----EQAQLDSPEVKSLVLDQLINKQLLSDEIHNAKYAISDSQLATY 116

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           +   P F  KD KFS +++   L++  ++  +                 F  GMR ++LL
Sbjct: 117 VTGMPEFQ-KDGKFSQELYDQTLSQNQLSPSK-----------------FEAGMR-ADLL 157

Query: 179 LDQAK----RFYF-ENRSVDYI--VLNNRHVPAIAD-------------PSNAVLTQWFE 218
             QA+    R  F  N   D +  + N + V  +++             P    +  ++E
Sbjct: 158 AQQAQDGIARLGFISNARADEVLKLANQQRVVTVSEIKTKDFVDQVTVKPEE--VKAYYE 215

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF- 277
           ++K+    PE  +I ++        + + +S+DE++  Y+ N  K+   E R    ++  
Sbjct: 216 QHKNKLIVPEQVKIEFLSLAPVNFMRNVNVSDDEVKKYYDDNAAKFQGNEQRRASHILIA 275

Query: 278 ------PNQKE-----ADEAFQSLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIP 321
                 P QK+     A+E    +KK   KF QLA    ++ G ++    LGSFS+  + 
Sbjct: 276 FGVSATPEQKQQAKAKAEEILAQIKKDPSKFEQLAVKNSQDPGSAVKGGDLGSFSRGAMV 335

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                D+ FS+ K    + ++   FGY I  V+ I       F  +K  I   +   KA 
Sbjct: 336 K-PFEDAAFSM-KVNQVSDLVESEFGYHIIKVTEISGQ-NADFNSLKPQIKGDLMFQKAK 392

Query: 382 EK 383
           ++
Sbjct: 393 DE 394


>gi|145634178|ref|ZP_01789889.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           PittAA]
 gi|145268622|gb|EDK08615.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           PittAA]
          Length = 622

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 185/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  F+  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNSVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        K +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISKNLQVTDIEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  +   +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400


>gi|145638176|ref|ZP_01793786.1| lipoprotein signal peptidase [Haemophilus influenzae PittII]
 gi|145272505|gb|EDK12412.1| lipoprotein signal peptidase [Haemophilus influenzae PittII]
 gi|309751332|gb|ADO81316.1| Putative peptidyl-prolyl cis-trans isomerase [Haemophilus
           influenzae R2866]
          Length = 622

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 185/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  F+  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNSVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        K +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISKNLQVTDIEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKMAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  +   +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400


>gi|296135612|ref|YP_003642854.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
 gi|295795734|gb|ADG30524.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
          Length = 640

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 167/413 (40%), Gaps = 34/413 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFIN 58
           MLE IRK S+    +I L VL  P F+++G+     S  GS+   + VG Q +       
Sbjct: 1   MLESIRKHSKLM--QIVLFVLIFPSFVLFGI-QGYSSFEGSADAAAKVGGQTISMQQLDA 57

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           + + E+  +   +G  V+ ++  +     + LD ++    L        LE    +V   
Sbjct: 58  ANRDEIARLQSMLGSAVDIKQLDTPEQKLRTLDGMIRQTLLQLEARREHLEVTDAQVQQA 117

Query: 119 IARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
           I + P        D  F    + S +A +G+N  ++     + L    V+    G +  S
Sbjct: 118 ILQIPQIAALRKPDGSFDVQAYRSLIAAQGMNTAQFEAQVREQLILQQVLSGLAGSVIDS 177

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK-YKDN---YRAPEYKR 231
             L   A +   + R V   +      PA       V  Q  E  YK+N   ++ PE   
Sbjct: 178 QALATAAAKAAAQQREVRLALFK----PADYTAQVQVTPQEIETFYKNNTARFQKPESAD 233

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           I Y++    E    I+++ ++ +A Y+ N  K+ +P  R    ++     +A  A Q   
Sbjct: 234 IQYVVLSAAEVAAGIKVTAEQAKAFYDANLSKFSTPAERRASHILIAVPADATAAQQEQA 293

Query: 292 KGK-------------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           K +             +F  LA    ++ G +     LG F+ + +     AD++F + K
Sbjct: 294 KARAEAIAKQVKANPAEFAALARKDSQDPGSAEKGGDLGYFTADSMVK-PFADAVFGMQK 352

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
            G+    I   FGY I  ++ IKP     F  VK  I  Q++   A +++  D
Sbjct: 353 IGEIVGPIKTQFGYHIIELTGIKPGAQQPFDAVKASIEKQLQQEAAQKQMSAD 405


>gi|187923900|ref|YP_001895542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phytofirmans PsJN]
 gi|187715094|gb|ACD16318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phytofirmans PsJN]
          Length = 645

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/409 (20%), Positives = 169/409 (41%), Gaps = 25/409 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +    L+++ VP L + G+         S+ V SV   K+  + + ++
Sbjct: 1   MLDFFRNHKRLMM--FMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q+L    Q +G   + +   +     ++LD L+    L    + + L A    V   +
Sbjct: 59  MRQQLDRARQMLGAQFDMKSFDTPERRAQMLDGLIEQRVLADETQRLHLTASDDAVRRVL 118

Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D     D +   LA +G+   +Y +     ++   +     G    S 
Sbjct: 119 MSDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L         + R V  I  + R   A   P++A L  +++ +++ +  P    I Y++
Sbjct: 179 TLAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNEFATPATATIQYVV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFP-----------NQKEAD 284
                     + S+ +L+  Y+ N   Y +  ++R    L+              +++A+
Sbjct: 239 MSPATLAASAQPSDADLKKYYDDNIAHYRTDGQVRASHILIAAPKDASAADKAKAKQKAE 298

Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSDIS----LGSFSKEYIPD-VSLADSIFSLAKKGDF 338
           E    +K    +F Q+A++  +     S    LG F +  I    +  D++F+L KK + 
Sbjct: 299 ELLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGKAFDDAVFAL-KKDEV 357

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           + ++   FGY I  V+++KP+ T  F EVK  I+  ++   AS+   +D
Sbjct: 358 SGIVQTDFGYHIVKVTDVKPAVTKPFDEVKDQISKDLKAQLASKAFTDD 406


>gi|241763692|ref|ZP_04761741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
 gi|241367081|gb|EER61455.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
          Length = 641

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 90/419 (21%), Positives = 177/419 (42%), Gaps = 51/419 (12%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M E IRK S+  V  + L +L +P F++ G+  + FS   SS V  V    +  + + N+
Sbjct: 1   MFESIRKHSK--VVMLLLFLLIIPSFVLVGIDRSYFS-QKSSVVARVDGHDISQTDWDNA 57

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFIEDIGLEADH------ 112
            K E   I           RA+S  +D K+LD+  +  ATL++ + D   +A        
Sbjct: 58  HKVETDRI-----------RAQSPTVDAKLLDSPQARYATLERLVRDRVFQAASQKMHLV 106

Query: 113 ------GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
                  R   EI         D     + + + +  +G++ + +  +  + +S   V+G
Sbjct: 107 TSDSRLARSLQEIPAIAALKRPDGSLDAEAYRALVGAQGMSPEGFEANVRRDISVNQVLG 166

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
             +G    ++  +  A    ++ R V     N         PS+A L  +++ +  +++ 
Sbjct: 167 GVMGTAFGTDAQVKLALDALYQRREVQVARFNPADFAGKVTPSDADLEAYYKAHTADFQQ 226

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
            E   + Y++ D+      I ++ D+L+  Y++N  +    E R    ++    K+A  A
Sbjct: 227 AEQATVEYVVLDLDSVRAGITLNEDDLRTYYKENLTRLAGKEERRASHILINASKDAPAA 286

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-------------------D 327
            +   K +   QL E+  K+ +  +    +K+   D   A                   D
Sbjct: 287 DREKAKARA-TQLLEQVRKAPA--TFAEVAKKSSDDTGSAPAGGDLNFFGRGAMVKPFED 343

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           + F++ KKGD + V+   FGY I  +++IK     +F+E++  +  +++  +A  K  E
Sbjct: 344 AAFAM-KKGDISDVVETDFGYHIIMLTDIKTPRQPNFEELRPSMEAELKQQQAQRKFAE 401


>gi|229846060|ref|ZP_04466172.1| lipoprotein signal peptidase [Haemophilus influenzae 7P49H1]
 gi|229811064|gb|EEP46781.1| lipoprotein signal peptidase [Haemophilus influenzae 7P49H1]
          Length = 622

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 185/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  F+  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNSVYQRILQQNRLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        K +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISKNLQVTDVEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  +   +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400


>gi|148826351|ref|YP_001291104.1| lipoprotein signal peptidase [Haemophilus influenzae PittEE]
 gi|148716511|gb|ABQ98721.1| lipoprotein signal peptidase [Haemophilus influenzae PittEE]
          Length = 622

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 185/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  F+  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNSVYQRILQQNRLTS----DGYASILRASLPLEQIQNGIANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        K +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++ L+KG
Sbjct: 236 YIDLSADNISKNLQVTDVEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKVAYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  +   +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400


>gi|254468807|ref|ZP_05082213.1| PpiC-type peptidyl-prolyl cis-trans isomerase [beta proteobacterium
           KB13]
 gi|207087617|gb|EDZ64900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [beta proteobacterium
           KB13]
          Length = 627

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 175/404 (43%), Gaps = 34/404 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR       AK+ L ++ VPF ++G+   L S+  + TV SV   ++    F  S 
Sbjct: 1   MLETIRNGLEKKWAKVVLAIIVVPFALFGIDSYLNSMGSNVTVASVNNFEITAQDFQRSM 60

Query: 61  KQELGMISQKIGFVVNSERA--RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
                M+ Q+       +R+  +S    K ++D+LV    +   ++         ++   
Sbjct: 61  -----MVLQERLDAEGQDRSILQSPEFRKSVIDSLVDSQLIKSAVDKYNFRISDDQLSTY 115

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I   P F  ++ KFS D +   +   G+  K+        ++   + G            
Sbjct: 116 IVGMPDFQ-ENGKFSQDRYDQIVQYNGLTPKKLEQQIRGDMATQQIQGTLANLTYFPKKN 174

Query: 179 LDQAKRFYFENRSV---DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +++  +  ++ R V   D ++L+      + D     + +++E   D++  P+  +I ++
Sbjct: 175 IEEIAKIAYQKRHVKLYDMLLLDYEDKIKVTDDE---IKEFYEANTDSFIRPDQVKIEFV 231

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEADE--------A 286
           ++ V      + ++++E++  YE NK+ Y   E R+   ++F  +  ++DE        A
Sbjct: 232 VYSVANIVPNVSVTDEEVKEFYEFNKQNYEGDEERSASHILFMADASQSDEEVEKVRQKA 291

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDI--------SLGSFSKEYIPDVSLADSIFSLAKKGDF 338
              LK  KK     EE  K LS          SLG F +  +      +S F+L  KG+ 
Sbjct: 292 SNVLKDIKKDPNKFEEYAKDLSQDPESAKNGGSLGFFKRGVMVK-EFEESAFTL-NKGEI 349

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           + ++   FG+ I  + ++K    VSF++VK  +  ++   KA E
Sbjct: 350 SDLVRTDFGFHIIRLDDVKGD-QVSFKDVKAQVKGELLYGKALE 392


>gi|121594957|ref|YP_986853.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
 gi|120607037|gb|ABM42777.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
          Length = 640

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 92/421 (21%), Positives = 179/421 (42%), Gaps = 55/421 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M E IRK S+  +    L +L +P F++ G+    FS  GS  V  V  + +  + + N+
Sbjct: 1   MFESIRKHSK--IVMFLLFLLIIPSFILVGIDSNYFS-GGSPVVARVDGKDITQADWDNA 57

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFI---------EDIGLE 109
            + E   I           RA+S G+D K+LD+  +  ATL++ +         +D+ + 
Sbjct: 58  HRMESDRI-----------RAQSPGIDAKLLDSPQARYATLERLVRDRVLQVAAQDMHML 106

Query: 110 ADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
               R+  E+   P        D     + + +    +G+  +       + LS   V+G
Sbjct: 107 TSDARLARELQSIPQIAALKRADGTLDAEAYRALAGAQGLTPEGLEARIRQDLSVNQVMG 166

Query: 167 MFVG----GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
             +G    G   + L LD      F+ R +     N     +    ++A L  ++  +  
Sbjct: 167 GVMGSAFSGPAEARLALDA----LFQRREIQIARFNASAFVSKVVVTDADLEAYYTAHPA 222

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
            ++  E   + Y++ D+   +  I +S D+L+  Y++N  +    E R    ++    K+
Sbjct: 223 KFQQAEQASVEYVVLDLDAVKAGITLSEDDLRTYYKENLNRLAGKEERRASHILINASKD 282

Query: 283 ADEAFQSLKKGK-------------KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSL 325
           A    ++  K K              F ++A+++    G + S   LG F +  +     
Sbjct: 283 APADARTQAKAKAEELLAQVRKAPGSFAEIAKKESQDPGSAPSGGDLGFFGRGAMVK-PF 341

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            D++FS+ KKG+ + V+   FG+ I  +S+IK     SF+E++  +  +++  +A  K  
Sbjct: 342 EDAVFSM-KKGEISDVVETDFGFHIILLSDIKTPRQPSFEELRPSLEAELKQQQAQRKFA 400

Query: 386 E 386
           E
Sbjct: 401 E 401


>gi|261365094|ref|ZP_05977977.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria mucosa ATCC
           25996]
 gi|288566520|gb|EFC88080.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria mucosa ATCC
           25996]
          Length = 511

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 128/294 (43%), Gaps = 30/294 (10%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A+I L ++ + F+ +G+  A    SGS  +V VG +K+   +  N+              
Sbjct: 12  AQILLGLIALTFIGFGVETA--RNSGSDYIVKVGSEKISDHTLNNA-------------- 55

Query: 74  VVNSERARSVGLDKK-ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            V +E+A   G  ++ I   LV  A L +  + +G++    +V   I   P FH  + KF
Sbjct: 56  -VQAEQAAGGGQSREAIFSGLVQRAYLKEGAKMMGIDVSMDQVKQAIVDDPAFHDANGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           S  +F   L++  ++E ++ID   +  +  +++ +   G   S+   +Q  +    NR++
Sbjct: 115 SQALFTQYLSQRHMSEDQFIDDLREQFALQNLINLVQNGAIISDSQAEQLIKLTQSNRTI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                      A     +A L +++E +K +Y  P+  ++ Y+  +     +K  IS DE
Sbjct: 175 RSFTFRPETFAAQVKTDDATLQRYYESHKKDYLIPQAVKLEYVALNAAHLAEKQSISADE 234

Query: 253 LQAEYEKNKEKYFSPEIRTVEQ----LVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           ++        K F  E+  + Q    L F  +K   EA   LKK       A+E
Sbjct: 235 VK--------KAFDEEVAALPQNAPKLEFDKEKARIEAALKLKKASADFNAAKE 280


>gi|222110395|ref|YP_002552659.1| ppic-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
           TPSY]
 gi|221729839|gb|ACM32659.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
           TPSY]
          Length = 640

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 92/421 (21%), Positives = 179/421 (42%), Gaps = 55/421 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M E IRK S+  +    L +L +P F++ G+    FS  GS  V  V  + +  + + N+
Sbjct: 1   MFESIRKHSK--IVMFLLFLLIIPSFILVGIDSNYFS-GGSPVVARVDGKDITQADWDNA 57

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFI---------EDIGLE 109
            + E   I           RA+S G+D K+LD+  +  ATL++ +         +D+ + 
Sbjct: 58  HRMESDRI-----------RAQSPGIDAKLLDSPQARYATLERLVRDRVLQVAAQDMHML 106

Query: 110 ADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
               R+  E+   P        D     + + +    +G+  +       + LS   V+G
Sbjct: 107 TSDARLARELQSIPQIAALKRADGTLDAEAYRALAGAQGLTPEGLEARIRQDLSVNQVMG 166

Query: 167 MFVG----GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
             +G    G   + L LD      F+ R +     N     +    ++A L  ++  +  
Sbjct: 167 GVMGSAFSGPAEARLALDA----LFQRREIQIARFNASAFVSKVVVTDADLEAYYTAHPA 222

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
            ++  E   + Y++ D+   +  I +S D+L+  Y++N  +    E R    ++    K+
Sbjct: 223 KFQQAEQASVEYVVLDLDAVKAGITLSEDDLRTYYKENLNRLAGKEERRASHILINASKD 282

Query: 283 ADEAFQSLKKGK-------------KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSL 325
           A    ++  K K              F ++A+++    G + S   LG F +  +     
Sbjct: 283 APADARTQAKAKAEELLAQVRKAPGSFAEIAKKESQDPGSAPSGGDLGFFGRGAMVK-PF 341

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            D++FS+ KKG+ + V+   FG+ I  +S+IK     SF+E++  +  +++  +A  K  
Sbjct: 342 EDAVFSM-KKGEISDVVETDFGFHIILLSDIKTPRQPSFEELRPSLEAELKQQQAQRKFA 400

Query: 386 E 386
           E
Sbjct: 401 E 401


>gi|198283164|ref|YP_002219485.1| hypothetical protein Lferr_1036 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|198247685|gb|ACH83278.1| hypothetical protein Lferr_1036 [Acidithiobacillus ferrooxidans
           ATCC 53993]
          Length = 522

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 16/245 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59
           M+E  R   R+WVAK  +V++ + F++WG+S  LFS  S SS V +V  QK+  ++F   
Sbjct: 1   MMETFRNFGRSWVAKSLMVLIALSFVLWGVSGYLFSGHSTSSVVATVDGQKISDAAFQKR 60

Query: 60  WKQELGMISQKIGFVVNSERA--RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            K  L   S   G    ++ A  RS GL+  +L+ L+    L      +GL+     +  
Sbjct: 61  MKDALARYSHIFGATTAAKMAADRSFGLE--VLNGLIDNMLLGMEAGRLGLQVPDAALAK 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY--TKMLSRTDVVGMFVGGMRPS 175
           +I   P F  K   FS +++   LA  G+   ++ D    +  L +  VV   +      
Sbjct: 119 KIESIPAFQEK-GAFSKNLYQKLLAANGMTPAQFEDMLRESMRLEQLQVVPQVIATASKV 177

Query: 176 NLLLDQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
                +A R +    E R V  + + +    A A P+   +  ++  + D +R P   ++
Sbjct: 178 -----EATRIWAWSQEYRDVSTVDIRDSDFAAAARPTATQVADYYHAHMDQFRLPAQVQV 232

Query: 233 SYILF 237
            Y++ 
Sbjct: 233 QYVVL 237


>gi|118602656|ref|YP_903871.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567595|gb|ABL02400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 615

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 109/511 (21%), Positives = 229/511 (44%), Gaps = 47/511 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IR  ++ WVA + + ++ +PF+++G+S+    VS +  + SV    +  + F+  +
Sbjct: 1   MLGSIRNKTKGWVAYLIVGLITIPFVLFGISEYFTGVS-NIVIASVDGVDISKAEFLAKF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++    ++E      L + IL+ ++    L+Q   ++  E     +   I 
Sbjct: 60  NPQKRRLQQELDKKYDTEF--DAMLKQSILNQMIDKYLLEQLSNELSYETTANELNTIIQ 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPSNL- 177
            + LF  K  +FS + +   L   G    +Y     + L+ T +    +    + P+ L 
Sbjct: 118 ANNLFKKK-GRFSLEKYKQLLRLNGYTTIKYEAIKLQELTETQIKYNLLDSAFVIPTELA 176

Query: 178 ----LLDQAKRF-YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
               L DQ ++F Y    + DY+      V ++ +        ++   K  + APE  +I
Sbjct: 177 KLQKLNDQQRQFSYIAIHADDYVKEVKVDVQSVKN--------FYNNKKALFFAPEQVKI 228

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
            ++   +++  K I++S+DEL   Y+  +E++   E R  + ++  ++  A +    L  
Sbjct: 229 EFVELSLNKISKNIKVSDDELFNFYKDEQERFTREEERQAQHILLEDKSTAQKVIALLNN 288

Query: 293 GKKFIQLAEEQGKSLSDIS----LGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           G KF +LAE+  +  +  +    LG F++   +P+      +F++ K  + + ++   FG
Sbjct: 289 GGKFAKLAEQYSQDTASKANAGDLGFFTRGVMLPE--FEKKVFAM-KLNEVSDLVKSEFG 345

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF--LALGTSMDEIS 405
           Y I  ++NIK      F  VK ++ +    T+A    K  Y   E+   LA   +++EI 
Sbjct: 346 YHIIKLNNIKVKTLKPFDAVKSELLDLYTQTQAQ---KVFYSLTEQLTHLAYEVNLEEIV 402

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK---DHTVALPDGS 462
            +   +++ L + DF   D K  ++      ++++   F  D  L+K      + L    
Sbjct: 403 DQ---MNLKLQVSDFF--DRKNTQL-----NQKIVVTAFS-DTVLNKGENSEILELSKNK 451

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
            M ++++E +  R +   EV  ++     T+
Sbjct: 452 LMVIRVREKLAQRQKSFIEVKDEINAHLMTL 482


>gi|39997188|ref|NP_953139.1| hypothetical protein GSU2090 [Geobacter sulfurreducens PCA]
 gi|39984078|gb|AAR35466.1| hypothetical protein GSU2090 [Geobacter sulfurreducens PCA]
 gi|298506201|gb|ADI84924.1| conserved hypothetical protein [Geobacter sulfurreducens KN400]
          Length = 527

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 126/276 (45%), Gaps = 17/276 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPF-----LIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML I+RK  ++ V K+   V+ + F     L+WG  +    ++ SS  V V R K+ +  
Sbjct: 1   MLGIMRKYKQSPVIKVVFGVIVLSFIGTIFLVWGKGEG--KLTPSSYAVKVDRTKISYEE 58

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F  ++ +   +  Q  G  +  +  + + + K+ LD LV GA +     D+G++     V
Sbjct: 59  FQRTYYRLRDIYVQLYGPALTPDLEKQLNVKKQALDTLVEGALVRNAARDMGIKVSKDDV 118

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              IA  P F   +  FS + +V  L    I  KE+ +     L    ++      ++  
Sbjct: 119 QQAIAAMPSFQ-VNGAFSFNQYVQVLKANRIAPKEFEEGQKDEL----MIKKAQDQIKSR 173

Query: 176 NLLLDQAKRFYFENR----SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
             + D   R  F  R    ++ Y+  +   V A    ++  LT +  K +++++ PE   
Sbjct: 174 ATVSDDEARELFRKRNDRLAISYVSYSPDDVKAEIKLTDQELTDFLAKNQNDFKTPEKIS 233

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
           I+Y++ D   K   +E+S  ++QA Y+KN ++Y  P
Sbjct: 234 ITYVMVDPL-KVGGLEVSEADIQAWYQKNIDRYQGP 268


>gi|260219734|emb|CBA26579.1| hypothetical protein Csp_E36670 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 587

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 83/418 (19%), Positives = 174/418 (41%), Gaps = 48/418 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + +RK ++  +  +FL+++   F++ G+        G +TV +VG  K+    +  + 
Sbjct: 1   MFDFVRKHTKVLMFLMFLLIIPA-FVLVGVDGYKSMAGGGATVATVGNAKITQEEWDFAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDN----------LVSGATLDQFIEDIGLEA 110
           K E           V+  RA    LD K+LD+          LV    + + ++   +  
Sbjct: 60  KNE-----------VDRLRASVPNLDPKLLDSAEARYTTLERLVREKVMAEAVQTAHMTT 108

Query: 111 DHGRVWGEIARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
            + R+  E+ ++P        D     + +    A +G+  + +     + LS   V   
Sbjct: 109 SNARLARELQQNPTIASLRKPDGTLDMERYRQLAASQGLTPEGFEARVRRDLSLMQVESA 168

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
             G       L D A   +FE R V  +  +     +  +PS+A +  +F+     +++ 
Sbjct: 169 VTGTAFSPKALSDLALNAFFERREVQVLRFSPADYASKINPSDADIDAYFQANSALFQST 228

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E   + Y++ D+   +K + ++  +L++ +E+N  +  + E R    ++    K+   A 
Sbjct: 229 ETANVEYVVLDLEAVKKTVSVNEADLKSYFEQNASRLSAKEERRASHILINAPKDMPAAD 288

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-------------------DS 328
           ++  K +    LA  Q +   D S    +K+   DV  A                   D+
Sbjct: 289 RAKAKERATALLA--QVRKAPD-SFAEVAKKNSQDVGSAPRGGDLDFFGRGAMVKPFEDA 345

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            FS+ KKG+ + ++   FG+ I  ++++K +   +F+E +  +  ++R   A  K  E
Sbjct: 346 AFSM-KKGEISDLVESDFGFHIIKLADVKGAKQPTFEEARVSLEPELRAQSAQRKFAE 402


>gi|104781017|ref|YP_607515.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas entomophila L48]
 gi|95110004|emb|CAK14709.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
           entomophila L48]
          Length = 619

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 178/406 (43%), Gaps = 20/406 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V   + G      + + S     V  Q +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L +  L  L+    L Q  ED         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDEKMLREAALKGLIDRKLLLQGAEDAKFAFSEAALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KFS + F S + + G    ++     +ML++  ++G    G+  S+ + D
Sbjct: 121 QTPEFQ-VDGKFSAERFDSVIRQMGYGRMQF----REMLAQEMLIGQLRTGLAGSSFVTD 175

Query: 181 -QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            Q + F   E ++ D+  L  +  PA    S+  +   ++++   +  P+   I YI   
Sbjct: 176 KQVEAFARLEKQTRDFAALTFKADPAAVKVSDEEVKAHYDQHAKEFMTPDQVVIDYIELK 235

Query: 239 VHEKEKKIEISNDELQAEYEK-----NKEKYFSPEIRTVEQLVFPNQKEA--DEAFQSLK 291
                 ++++++DEL+A YEK      ++++ +  +  V       Q +A  +E  Q L+
Sbjct: 236 KSAFFDQVKVNDDELKALYEKEIANLGEQRHAAHILIEVNDKTTDAQAKARIEEIQQRLE 295

Query: 292 KGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           KG+ F +LA    ++ G + +   LG F+   + D +  D+++ L K     PV    FG
Sbjct: 296 KGEDFAKLAKAFSQDPGSANAGGDLG-FAGPGVYDPTFEDALYKLNKDQVSAPV-RTQFG 353

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           Y +  +  ++     SF  +K  +  +++  +  ++  E  K+LE+
Sbjct: 354 YHLVKLLGVQAPDVPSFASLKDKLTRELKTQQVEQRFVEATKQLED 399


>gi|253999166|ref|YP_003051229.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           SIP3-4]
 gi|253985845|gb|ACT50702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           SIP3-4]
          Length = 632

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 167/379 (44%), Gaps = 34/379 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S++W+AK+ L  + +PF I G+   L     S ++  V  + +    + NS 
Sbjct: 1   MLEAIRERSKSWLAKLILAAVTIPFAIVGIDTYLRDAGSSVSIAKVDGESISVQEYNNSM 60

Query: 61  KQ---ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA-TLDQF-IEDIGLEADHGRV 115
           ++   +L    +    V+     +   LD+ I++ L++ A T   F I D  L +DH   
Sbjct: 61  QRLRNQLQAEGKTDPSVLEQPDVKQSILDRLIINRLLNNAVTKSHFAIGDAAL-SDH--- 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY-TKMLSRTDVVGMFVGGMRP 174
              I   P F  ++ KFS + +   L    +   ++     T +L +    G+      P
Sbjct: 117 ---IITLPEFQ-ENGKFSQETYDRLLTSNRLTPSQFESTMRTDLLVQQAREGLAALAYLP 172

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
             +   Q      + R V    +             A +  +++++KD ++ PE  ++ +
Sbjct: 173 EPIS-KQTLATEHQQREVTIAEIKTADFLDQVKVDEAQIKAYYDQHKDKFKVPEQVKLEF 231

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKE 282
           +LF  +    K+++S++E++  Y++N  K+   E R    ++               +K+
Sbjct: 232 VLFSSNNLIPKVQVSDEEVKKYYDENAAKFQGNEQRRASHILISFGVSATTEAKQQAKKQ 291

Query: 283 ADEAFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           A+E    +++   +F  LA    ++ G +     LGSF +  +      D++FS+ K G+
Sbjct: 292 AEEVLAQVRQHPDQFADLAKKYSKDPGSAEKGGDLGSFGRGMMVK-PFEDAVFSM-KPGE 349

Query: 338 FTPVIHGSFGYVIAHVSNI 356
            + ++   FGY I  ++ I
Sbjct: 350 ISNLVESEFGYHIIKLTEI 368


>gi|294339748|emb|CAZ88110.1| putative Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase
           D) PpiD [Thiomonas sp. 3As]
          Length = 640

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 167/413 (40%), Gaps = 34/413 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFIN 58
           MLE IRK S+    +I L VL  P F+++G+     S  GS+   + VG Q +       
Sbjct: 1   MLESIRKHSKLM--QIVLFVLIFPSFVLFGI-QGYSSFEGSADAAAKVGGQTISMQQLDA 57

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           + + E+  +   +G  V+ ++  +     + LD ++    L        LE    +V   
Sbjct: 58  ANRDEIARLQSMLGSAVDIKQLDTPEQKLRTLDGMIRQTLLQLEARREHLEVTDAQVQQA 117

Query: 119 IARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
           I + P        D  F    + S +A +G+N  ++     + L    V+    G +  S
Sbjct: 118 ILQIPQIAALRKPDGSFDVQAYRSLIAAQGMNTAQFEAQVREQLILQQVLSGLAGSVIDS 177

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK-YKDN---YRAPEYKR 231
             L   A +   + R V   +      PA       V  Q  E  YK+N   ++ PE   
Sbjct: 178 QALATAAAKAAAQQRVVRLALFK----PADYTAQVQVTPQEVETFYKNNTARFQKPESAD 233

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           I Y++    E    I+++ ++ +A Y+ N  K+ +P  R    ++     +A  A Q   
Sbjct: 234 IQYVVLSAAEVAAGIKVTAEQAKAFYDANLSKFSTPAERRASHILIAVPTDATAAQQEQA 293

Query: 292 KGK-------------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           K +             +F  LA    ++ G +     LG F+ + +     AD++F + K
Sbjct: 294 KARAEAIAKQVKANPAEFPALARKDSQDPGSAEKGGDLGYFTADAMVK-PFADAVFGMQK 352

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
            G+    I   FGY I  ++ IKP     F  VK  I  Q++   A +++  D
Sbjct: 353 IGEIAGPIKTQFGYHIIELTGIKPGAQQPFDAVKASIEKQLQQEAAQKQMSAD 405


>gi|313201268|ref|YP_004039926.1| ppic-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           MP688]
 gi|312440584|gb|ADQ84690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           MP688]
          Length = 632

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 167/379 (44%), Gaps = 34/379 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S++W+AK+ L  + +PF I G+   L     S ++  V  + +    + NS 
Sbjct: 1   MLEAIRERSKSWLAKLILAAVTIPFAIVGIDTYLRDAGSSVSIAKVDGESISVQEYNNSM 60

Query: 61  KQ---ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA-TLDQF-IEDIGLEADHGRV 115
           ++   +L    +    V+     +   LD+ I++ L++ A T   F I D  L +DH   
Sbjct: 61  QRLRNQLQAEGKTDPSVLEQPDVKQSILDRLIINRLLNNAVTKSHFAIGDAAL-SDH--- 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY-TKMLSRTDVVGMFVGGMRP 174
              I   P F  ++ KFS + +   L    +   ++     T +L +    G+      P
Sbjct: 117 ---IITLPEFQ-ENGKFSQETYDRLLTSNRLTPSQFESTMRTDLLVQQAREGLAALAYLP 172

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
             +   Q      + R V    +             A +  +++++KD ++ PE  ++ +
Sbjct: 173 EPIS-KQTLATEHQQREVTIAEIKTADFLDQVKVDEAQIKAYYDQHKDKFKVPEQVKLEF 231

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKE 282
           +LF  +    K+++S++E++  Y++N  K+   E R    ++               +K+
Sbjct: 232 VLFSSNNLIPKVQVSDEEVKKYYDENAAKFQGNEQRRASHILISFGVSATAEAKQQAKKQ 291

Query: 283 ADEAFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           A+E    +++   +F  LA    ++ G +     LGSF +  +      D++FS+ K G+
Sbjct: 292 AEEVLAQVRQHPDQFADLAKKYSKDPGSAEKGGDLGSFGRGMMVK-PFEDAVFSM-KPGE 349

Query: 338 FTPVIHGSFGYVIAHVSNI 356
            + ++   FGY I  ++ I
Sbjct: 350 ISNLVESEFGYHIIKLTEI 368


>gi|291279447|ref|YP_003496282.1| peptidyl-prolyl cis-trans isomerse D [Deferribacter desulfuricans
           SSM1]
 gi|290754149|dbj|BAI80526.1| peptidyl-prolyl cis-trans isomerse D [Deferribacter desulfuricans
           SSM1]
          Length = 626

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 169/407 (41%), Gaps = 69/407 (16%)

Query: 1   MLEIIRKASRTWVAKIFLVV---LFVPFLIWGLSDALFSVSGSSTVVSVGRQK---VPFS 54
           ML + R   +     ++LV+   +   FL+WG       V G+      GRQK   +  +
Sbjct: 1   MLRMFRNQKKILAFFLWLVIAAFIGTIFLVWG-------VGGNR-----GRQKNYAIKVN 48

Query: 55  SF---INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD 111
            F    N ++QE    S  +  ++  E   ++ ++K++ D+++    L      +G+   
Sbjct: 49  DFEISFNEYQQEYDKFSNTLKSLLGGEIPNTININKQVTDSIIEKYLLLDQANKLGVFVS 108

Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
              V+ EI   P F   + +F    +V  L   G+    +         R+    + V  
Sbjct: 109 DVEVFNEIKNIPSFQT-NGQFDAKRYVEILRLNGLTPASF--------ERSIKADLLV-- 157

Query: 172 MRPSNLLLDQA--------KRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
            +  NL+              + + N++  + YI LN+         ++  L  +FEK K
Sbjct: 158 QKTKNLITQSVSVNENEIKNEYIYRNKTAKISYIKLNSEKFKKDVTYNDEELKAYFEKNK 217

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277
           ++YR PE  ++ YI  D  +  K+I++S++E++  Y ++ +++   E    + ++     
Sbjct: 218 EDYRVPEKIKLKYIKIDPKDFNKEIKVSDEEIEKYYLQHTDEFIEKEKVAAKHILIRVKD 277

Query: 278 --------PNQKEADEAFQSLKKGKKFIQLAE--------EQGKSLSDISLGSFSKEYIP 321
                     +K+ +   Q +KKG KF  LA+        + G  L   + G   KE+  
Sbjct: 278 WNNKKEVAEAKKKIENILQKIKKGAKFEDLAKKYSDDPTAKNGGDLGYFTKGQMIKEF-- 335

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
                D +F L K GD + ++   FGY I  V   KP   ++  E K
Sbjct: 336 ----EDVVFKL-KPGDISDIVKTKFGYHIIKVYGHKPEKKLTLDEAK 377


>gi|261493077|ref|ZP_05989616.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261311256|gb|EEY12420.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 623

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 168/397 (42%), Gaps = 40/397 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + +   V KI   ++ + F+I G+   L  +S  ++V  V  +++    F N+ 
Sbjct: 1   MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGL--ISQDNSVAKVNGEEISQQLFNNTL 58

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            +E   ++ ++G      + + E A     ++ +L+ L+    L Q+ +++ L     ++
Sbjct: 59  NREQNRLNAELGSRFWDLMDSPEYA--AQFNQSVLNGLIDEELLRQYAKELKLGISADQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  S +F  +D KFS++++   L    ++     D Y  ++    +      G+  S
Sbjct: 117 KSEIVNSQMFQ-QDGKFSNELYQQTLRHNNLS----ADGYAAIVQEGMLQSQLQEGIINS 171

Query: 176 NLLLDQAKRFYF-------ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
           +  +   +           E R  ++ V        +++     L  ++E  K    APE
Sbjct: 172 DFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTVSEQE---LRAYYEANKTKLLAPE 228

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
              + Y+     + E K+EI+N+++Q  Y++NK  Y +     +  +   ++ EA    Q
Sbjct: 229 KLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQ 288

Query: 289 SLKKGKKFIQLAEEQ---------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           +LK G+ F  LA+ +         G  L     G+F K +       D++ +L   G  +
Sbjct: 289 ALKNGEDFATLAKNKSSDTLSANNGGDLGWAKAGTFPKAF------EDAVANLT-AGQMS 341

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +     Y I  V   KP   +   +VK  IA  +R
Sbjct: 342 AAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIR 378


>gi|89095457|ref|ZP_01168368.1| peptidyl-prolyl cis-trans isomerase D, putative [Oceanospirillum
           sp. MED92]
 gi|89080287|gb|EAR59548.1| peptidyl-prolyl cis-trans isomerase D, putative [Oceanospirillum
           sp. MED92]
          Length = 627

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 120/575 (20%), Positives = 225/575 (39%), Gaps = 75/575 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+  +AKI + ++ V F ++G+   +    GS+   +V  ++V     +   
Sbjct: 1   MLQSIRDNSQGIIAKIIVGLIAVTFALFGVESLVSLTGGSNAPATVNGEEVSQQELVQGM 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   +  ++G   +        +   +L+ L+    L Q  E+ GL      +   I 
Sbjct: 61  RLQRNQMLSQMGENADPGLLNDNLISSMVLEGLIEQKVLVQSAENQGLVFTDAMIDQLIV 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK-MLSRTDVVGMFVGGMRPSNLLL 179
            +  F   D KF    F + L   G++   Y     K  L+  + +   +     SN L 
Sbjct: 121 STKDFQ-VDGKFDKVQFETVLRNAGLSPLSYRALVRKEKLTEQERIAYLLSAFTLSNEL- 178

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           ++      ++R   Y  L      A    S+  +  +F +    Y + E   I YI+ D 
Sbjct: 179 NEIATLQNQSRDTRYFTLAAEPERAAQTVSDDEVADYFAQNSGQYLSDEQVAIEYIVLDR 238

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV---------EQLVFPNQKEADEAFQSL 290
            + EK +E++ DE+ A Y++  + Y + E+R           EQ     + +A      L
Sbjct: 239 ADLEKDVEVTADEVSAAYQQMVDSYQAQELRQAAHIMVEISDEQEAAAAETKAKALLDRL 298

Query: 291 KKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
             G+ F  +A+         E G  L     G+FS E+       D++++L +KG  +  
Sbjct: 299 NAGEDFAAVAQSDSDDPASAEMGGDLGVNEKGTFSAEF------EDALYAL-EKGQISEP 351

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +   FGY +  + ++  S   +F+E K  I   +   KA          LE    L T  
Sbjct: 352 VQTEFGYHLIKLLDVVESEVPTFEEAKAGIERDLLNEKA---------ELEFVAQLDTLK 402

Query: 402 DEISRREKIVSIDLPLVDFAGKD-VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV---- 456
           D               V F+  D V+  E   +  +   LF   G + P++ +  V    
Sbjct: 403 D---------------VAFSSGDLVEPAETLGLEIQTSELFSRAGNEAPITSEPKVLSVT 447

Query: 457 ---------------ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
                           L     + ++I +    R+R L+EV   +       K AE +++
Sbjct: 448 FDPSFLQEGVNSDPIELSSSKVVVLRILDHQLPRERSLDEVKEVITATLLEEKVAEALTT 507

Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           KA+Q + +  K+G+    +    G+ +++   I+R
Sbjct: 508 KADQFIAKL-KQGEALESLAS--GSEVISKTDISR 539


>gi|57167705|ref|ZP_00366845.1| conserved hypothetical secreted protein, putative [Campylobacter
           coli RM2228]
 gi|57020827|gb|EAL57491.1| conserved hypothetical secreted protein, putative [Campylobacter
           coli RM2228]
          Length = 495

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 117/495 (23%), Positives = 205/495 (41%), Gaps = 47/495 (9%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           W++ I  V     FL WG  D  F+++ SS+V  VG +K+ ++ F   + Q     +Q  
Sbjct: 17  WISTIAFVG--AGFLGWGAYD--FNLNRSSSVAVVGDEKINYNEFNVRYNQIFNYYNQIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +N E A+ +G++   L +LV    L  F +D+GL +    V   +A +  F      
Sbjct: 73  NGGLNEESAKQLGIENAALSSLVENKLLLNFAKDLGLGSSENEVIQALAETKAFQDPSGD 132

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFEN 189
           F+  ++   L    I  KE    Y K LS   ++G    +  +  ++  L      YF  
Sbjct: 133 FNKTIYYELLNANNITPKE----YEKTLSNEIIIGKLEQIFNLPQTDEELKMLGASYFMQ 188

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS--YILFDVHEKEKKIE 247
            S++   L         +     L + + ++K++Y+  +   IS  Y+  D+     KI+
Sbjct: 189 DSLNIAKLEQDKENIKVNEEE--LKKLWNEHKEDYKTKKVYEISTYYLPVDMQ----KID 242

Query: 248 ISNDELQAEYEKNKEKY--FSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQ 303
            S  E     E NK KY  FS +I + E          D A   LK     KF++L E +
Sbjct: 243 DSKLEEFYNNENNKFKYKDFSGKIMSFE--AAKKDVAKDYALAQLKNTANAKFLELKEGK 300

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            K   D ++   S  Y P  +L     S AK GD         GY+I  ++   P  T +
Sbjct: 301 DKFQKDENITD-SDVYYPLEAL-----SRAKNGDVLRPSEYQNGYIIIKLNKTNPVRTKT 354

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
           F E ++++       +A + ++E  K+ LE F   GT++  +SR            D   
Sbjct: 355 FDEAREELMPIYISEQAKKNLEEKAKQNLENF--SGTNIGFVSR------------DTVR 400

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
            D K   +         L  VF  D   ++ + +   D + ++   K+ +     K ++ 
Sbjct: 401 NDAKISNILNEAEFSYFLMNVFNSDQ--NRSYVILNEDKAILYKINKQKLDMNPEKFQQY 458

Query: 483 LTDVKKDWKTVKTAE 497
            T + ++ +++K  E
Sbjct: 459 RTMLNQNLQSLKANE 473


>gi|148548673|ref|YP_001268775.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           F1]
 gi|148512731|gb|ABQ79591.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           F1]
          Length = 623

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 177/406 (43%), Gaps = 20/406 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V   + G      + + S     V  Q +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L ++ L  L+S   L Q  ED         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KFS D F   + + G    ++     +ML    ++G    G+  S+ + D
Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQF----REMLGEEMLIGQLRTGLAGSSFVTD 175

Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           Q    +   E ++ D+  L  +  PA    S+  +   ++++   + +P+   I YI   
Sbjct: 176 QQVDAFARLEKQTRDFASLTFKADPAAVKVSDEEVKAHYDQHAKEFMSPDQVVIDYIELK 235

Query: 239 VHEKEKKIEISNDELQAEYEKN-----KEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLK 291
                 +++++++EL+A+YEK      ++++ +  +  V   V   Q +  A+E  Q L 
Sbjct: 236 KSAFFDQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVSDAQAKARAEEIEQRLA 295

Query: 292 KGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           KG+ F  LA+E     G + S   LG F+   + D +  ++++ L + G  +  +   FG
Sbjct: 296 KGEDFAALAKEFSQDPGSATSGGDLG-FAGPGVYDPAFEEALYQL-QNGQVSAPVRTEFG 353

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           Y +  +  ++     SF  +K  +   +++    ++  +  K+L++
Sbjct: 354 YHLIKLLGVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQD 399


>gi|303257878|ref|ZP_07343887.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales
           bacterium 1_1_47]
 gi|302859221|gb|EFL82303.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales
           bacterium 1_1_47]
          Length = 645

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 171/396 (43%), Gaps = 35/396 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M +  R   R W+  I ++++   F+  G++        ++ +  V  + +    F    
Sbjct: 5   MFQSFRNQKR-WLMLIAMILIIPAFVFIGINGYSRLNPDANAIAKVDGKGIQPEEFDYQK 63

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ +  + Q+ G  V+     +   +  IL N+ +   L   +    +          I 
Sbjct: 64  REYIERMRQQEGGAVDPSIFETQEANAAILQNIATRRALQAQMAHHYMNVSEADAINVIK 123

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGMRPS 175
            +  F  KD +FS +++ + LA  G ++++++     D    ML  +     FV   + +
Sbjct: 124 NADAFK-KDGQFSPELYENYLAARGKSDQQFVYELRRDLVQDMLVNSVAQTTFVP--KKT 180

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
             LL+   R   E R V  +  +          S   + ++++++KD+YRAPE   I ++
Sbjct: 181 VALLNDILR---ETRVVRTMSFDPSSYMKDVKVSEEQIKKYYDEHKDDYRAPESLNIQFV 237

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEA-------- 286
           +      +   E S  EL+  YE+N++KY   E R     L+ P+  EAD+A        
Sbjct: 238 VMSPETVKMTAEPSEQELKDFYEQNRKKYEVEESRRAAHILIAPDANEADKAKADQDAKA 297

Query: 287 -----FQSLKKG-KKFIQLAEEQ----GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKK 335
                   +K    KF QLA+E     G + S   L  F++ + +P+   A  +F  AKK
Sbjct: 298 KAEKILAEVKADPSKFAQLAKENSADPGTAESGGDLDFFTQGQMVPEFDKA--VFG-AKK 354

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
            +    +   FGY I HV++I P+    F+EV+ +I
Sbjct: 355 DEIVGPVKTEFGYHIIHVTDINPAHVRPFEEVRSEI 390


>gi|331000463|ref|ZP_08324138.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
           YIT 11859]
 gi|329571795|gb|EGG53475.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
           YIT 11859]
          Length = 641

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 171/396 (43%), Gaps = 35/396 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M +  R   R W+  I ++++   F+  G++        ++ +  V  + +    F    
Sbjct: 1   MFQSFRNQKR-WLMLIAMILIIPAFVFIGINGYSRLNPDANAIAKVDGKGIQPEEFDYQK 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ +  + Q+ G  V+     +   +  IL N+ +   L   +    +          I 
Sbjct: 60  REYIERMRQQEGGAVDPSIFETQEANAAILQNIATRRALQAQMAHHYMNVSEADAINVIK 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGMRPS 175
            +  F  KD +FS +++ + LA  G ++++++     D    ML  +     FV   + +
Sbjct: 120 NADAFK-KDGQFSPELYENYLAARGKSDQQFVYELRRDLVQDMLVNSVAQTTFVP--KKT 176

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
             LL+   R   E R V  +  +          S   + ++++++KD+YRAPE   I ++
Sbjct: 177 VALLNDILR---ETRVVRTMSFDPSSYMKDVKVSEEQIKKYYDEHKDDYRAPESLNIQFV 233

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEA-FQSLKKG 293
           +      +   E S  EL+  YE+N++KY   E R     L+ P+  EAD+A      K 
Sbjct: 234 VMSPETVKMTAEPSEQELKDFYEQNRKKYEVEESRRAAHILIAPDANEADKAKADQDAKA 293

Query: 294 K-------------KFIQLAEEQ----GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKK 335
           K             KF QLA+E     G + S   L  F++ + +P+   A  +F  AKK
Sbjct: 294 KAEKILAEVKADPSKFAQLAKENSADPGTAESGGDLDFFTQGQMVPEFDKA--VFG-AKK 350

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
            +    +   FGY I HV++I P+    F+EV+ +I
Sbjct: 351 DEIVGPVKTEFGYHIIHVTDINPAHVRPFEEVRSEI 386


>gi|319792645|ref|YP_004154285.1| ppic-type peptidyL-prolyl cis-trans isomerase [Variovorax paradoxus
           EPS]
 gi|315595108|gb|ADU36174.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           EPS]
          Length = 638

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 144/340 (42%), Gaps = 45/340 (13%)

Query: 79  RARSVGLDKKILD-NLVSGATLDQFIEDIGL------------EADHGRVWGEIARSPLF 125
           R +S  +D  +LD + +  ATL++ + D  L            E    R++ +      F
Sbjct: 66  RQQSPNVDPTVLDSDALRYATLERMVRDRVLAAAAAKANMTVSEDRLSRIFAQDPGLASF 125

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
              D KF  + F+    R    E+        M ++  ++G+    + P  L+      F
Sbjct: 126 RTPDGKFDRETFLRVTGR--TPEQYEAQVRADMSTQQVLLGVSGTALTPPALVAATVNAF 183

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
           Y + R +           +    S+A +  +++ +   ++APE   I Y++ D+   +K 
Sbjct: 184 Y-DRREIQVARFAPDGFASKVTVSDADIEAYYKDHTSQFQAPEQANIEYLVLDLDAAKKN 242

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE---- 301
           + ++  +L+  YE+N  ++ + E R    ++         A +   K K    LAE    
Sbjct: 243 VVVNEADLKTYYEQNTARFGTKEERRASHILITAPASMSAADREKAKAKAEQLLAEVKKA 302

Query: 302 ------------------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                             E+G  L  ++ G+  K +       D++F+L KKG+ + V+ 
Sbjct: 303 PNTFADVARKNSQDPGSAEKGGDLDFVTKGAMVKPF------EDAMFAL-KKGEISGVVE 355

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             FGY I H+ +IKP+    F++V+  I +++R  +A+++
Sbjct: 356 TEFGYHIIHLVDIKPAVVPPFEQVRATIESEVRAAQAAQE 395


>gi|89073234|ref|ZP_01159764.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium sp.
           SKA34]
 gi|89050944|gb|EAR56408.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium sp.
           SKA34]
          Length = 630

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 179/409 (43%), Gaps = 21/409 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M+E +R+ + +   KI L ++   F+  G+   L    G+  V + V  +++   +F  +
Sbjct: 1   MMERLREGANSIWVKIILSLIIFSFVFAGVGSYL--AGGNEQVAAKVNDKEISQRAFEQA 58

Query: 60  WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ +   + Q++G   +    + A        +L+ +V+   ++Q   ++GL     +V 
Sbjct: 59  YQNQRNQMQQRLGDYFSKLMGDPAYVQQFRNSVLERMVNDELIEQRATELGLGVSDAQVK 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   D  F+++ +   L R G + +++ +   K + R   +    G     N
Sbjct: 119 QAIVAMPAFQ-VDGVFNNEQYNLTLRRAGFSPEQFAESIRKDMLRQQFLSALEGSDFALN 177

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             L++ ++   + R V  + LN          ++     +++K K  +  P   ++SYI 
Sbjct: 178 NELNELRKLESQERVVRTLKLNLADFTDKVTVTDKEAKAYYDKNKTQFTRPAQVKVSYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLK 291
                    I+I++ E +A Y ++K KY + E   V  ++       ++ +A+     LK
Sbjct: 238 LSDKNLVNNIKITDKETEAYYNEHKSKYSTAEKIQVSHILVKGDSDTSKAKAEALLAELK 297

Query: 292 KGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G  F  +A++          G     F K  + D +  ++ FSLAK GD + ++  SFG
Sbjct: 298 GGANFADVAKKSSDDTFSAKDGGKLDWFGKGVM-DPAFEEAAFSLAKPGDMSGLVKSSFG 356

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           Y I  +  I+      F +VK  I  +++     ++V E + +L+  LA
Sbjct: 357 YHIILLDGIEEPKVKPFADVKASIVAELQ----EQQVAEQFYKLQSKLA 401


>gi|192360723|ref|YP_001982468.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio
           japonicus Ueda107]
 gi|190686888|gb|ACE84566.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio
           japonicus Ueda107]
          Length = 621

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 115/555 (20%), Positives = 229/555 (41%), Gaps = 40/555 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59
           ML+ IR  S+  ++ I +  L V F ++G+ ++LF+ + ++  VV V  +K+      N+
Sbjct: 1   MLQSIRDNSKGVISYILIGFLVVIFALFGV-ESLFNWNPTANKVVEVNGEKITQVELQNA 59

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
             ++   +  + G  V SE      L K +LDNL+    L Q  +  G+   +  +  +I
Sbjct: 60  IARQKQQMMNRYGDQVPSEFLSEDYLRKPVLDNLIQNQVLYQAAKKAGMTVGNDLITEQI 119

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL- 178
           + +P+F  +   F +  +   L+  G         YT+ L++  V+     G+  S+   
Sbjct: 120 SSAPVFKNEAGVFDNTRYRQALSMMGYTHA----TYTQQLAKDLVLNQLYTGLASSSFTT 175

Query: 179 ---LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
              ++Q     ++ R   Y VL +  +      S+  +  ++ K    Y + E   + YI
Sbjct: 176 PNEIEQLIALSYQTRDFSYFVLPSSKIKESVVVSDEEIADYYAKNPQAYTSEEQVAVDYI 235

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ--KEADEAFQSLKKG 293
              V      I IS ++L  +YE+    + +   R    ++  NQ  ++     + L  G
Sbjct: 236 ELSVDALMADISISEEQLHKQYEQGLASFVAAPERHAAHILVENQDAEKIKAVREKLAAG 295

Query: 294 KKFIQLA---------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           + F +LA         +EQG  L      +F  E+       ++  +  K G+ +  +  
Sbjct: 296 EDFAELAKTYSDDLGSKEQGGDLGFTKGDTFPAEF-------ETALAGLKVGEVSAPVET 348

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
             G     +   + S   SF+E K  +   ++  +A        ++L+E      S+ E+
Sbjct: 349 DAGTHFIKLLAERGSQAPSFEEQKASLEEHLKRAEAENIFVAKLEQLKELAFNADSLAEV 408

Query: 405 SRR--EKIVSIDLPLVDFAGKDVKG-KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
           ++    K+ +  L     +G+ +   K VA   + E +L +     +P+  D T A+   
Sbjct: 409 AKEIDAKVSNTGL-FSRTSGQGIAANKLVADAAFSEDVL-QDGNSSEPIELDTTRAV--- 463

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
               ++  +  P+R   L+EV   +       K  E + +K +QL+ +    GK   ++ 
Sbjct: 464 ---VIKKTDYQPSRLLPLDEVKQQIVGVLTESKARELMRTKGSQLLADLHA-GKALDELA 519

Query: 522 KNLGASLLTTNQINR 536
              G +L T     R
Sbjct: 520 SAEGQALKTAAAAKR 534


>gi|83745917|ref|ZP_00942974.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
 gi|207743054|ref|YP_002259446.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum
           IPO1609]
 gi|83727607|gb|EAP74728.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
 gi|206594451|emb|CAQ61378.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum
           IPO1609]
          Length = 648

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/407 (18%), Positives = 168/407 (41%), Gaps = 24/407 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  + L+++F  F+ +G+      + GS     VG   +  S      
Sbjct: 1   MLDFVR-THRRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDARV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + Q +G   +  +     + + +LD ++    +        L     +V   I 
Sbjct: 60  REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRMMVNEASRTNLSVADTKVRETIE 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + P        D KF  D ++  LA +G+  +++       L    +    V        
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L+D+      + R V  ++L      +     +  +  +++ ++  +  PE  +  Y++F
Sbjct: 180 LVDRLIEARDQQREVQALLLKPADYASKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPN----------QKEADE 285
              +  K+I ++ ++L+  Y++N  ++ + E R    ++   P+          +K A+E
Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299

Query: 286 AFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFT 339
               ++K    F +LA    E+ G +     LG  +K   +P    A  +F+L + GD +
Sbjct: 300 VLAEVRKTPGNFAELAKKYSEDPGSAAQGGELGFLAKGATVPQFESA--LFALKQPGDIS 357

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            V+   FG+ +  +  +K     S + VK ++  ++R   A++K  E
Sbjct: 358 DVVQSDFGFHVIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTE 404


>gi|313499610|gb|ADR60976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           BIRD-1]
          Length = 623

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 177/406 (43%), Gaps = 20/406 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V   + G      + + S     V  Q +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L ++ L  L+S   L Q  ED         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KFS D F   + + G    ++     +ML    ++G    G+  S+ + D
Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQF----REMLGEEMLIGQLRTGLAGSSFVTD 175

Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           Q    +   E ++ D+  L  +  PA    S+  +   ++++   + +P+   I YI   
Sbjct: 176 QQVDAFARLEKQTRDFASLTFKADPAAVKVSDEEIKAHYDQHAKEFMSPDQVVIDYIELK 235

Query: 239 VHEKEKKIEISNDELQAEYEKN-----KEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLK 291
                 +++++++EL+A+YEK      ++++ +  +  V   V   Q +  A+E  Q L 
Sbjct: 236 KSAFFDQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVTDAQAKARAEEIEQRLA 295

Query: 292 KGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           KG+ F  LA+E     G + S   LG F+   + D +  ++++ L + G  +  +   FG
Sbjct: 296 KGEDFAALAKEFSQDPGSANSGGDLG-FAGPGVYDPAFEEALYQL-QNGQVSAPVRTEFG 353

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           Y +  +  ++     SF  +K  +   +++    ++  +  K+L++
Sbjct: 354 YHLIKLLGVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQD 399


>gi|148264907|ref|YP_001231613.1| hypothetical protein Gura_2867 [Geobacter uraniireducens Rf4]
 gi|146398407|gb|ABQ27040.1| hypothetical protein Gura_2867 [Geobacter uraniireducens Rf4]
          Length = 525

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 125/273 (45%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKI-FLVVLF----VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML I+RK  ++ + KI F V++F      FL+WG  D             V   K+ F  
Sbjct: 1   MLGIMRKYKQSVLIKIVFCVIVFSFIGTIFLVWGRGD---KTDSGDFAAKVNGTKISFDE 57

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  ++ +  G+  Q  G  +  E  + +G+ K  L++L+  A + +  + +G++ +   +
Sbjct: 58  YQKNYYRMKGIYEQIYGRSMTPEMEKQLGIKKTALESLIDNALILKEAKRLGIDVNRDEI 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EIA+ P F  KD  F+ D +   L    I  +    ++ + +    +V      ++  
Sbjct: 118 SAEIAKMPAFQ-KDGVFNFDQYTQMLKANRITPQ----NFEESMEEDMLVKKTREKIKER 172

Query: 176 NLLLDQ--AKRFYFENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
             + DQ   + F  +N  +D  +I  +   V      ++  L  + + +++ ++ PE   
Sbjct: 173 ATVSDQDLLQAFKKQNDKIDLSFIAFSPAEVKGEVKVTDQDLNSYLQGHQEEFKTPEQLS 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
           I+Y + D  +   K+ +S++E Q  Y+KN ++Y
Sbjct: 233 IAYAVLDPAQFAAKLTVSDEEAQTYYQKNIDRY 265


>gi|145630100|ref|ZP_01785882.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021]
 gi|144984381|gb|EDJ91804.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021]
          Length = 622

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 184/415 (44%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  + +Q+ G  F+  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNSVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        K +++++ E+   Y+ NK ++ +  +  ++   F N+++A   ++ L+KG
Sbjct: 236 YIDLSADNISKNLQVTDIEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKVVYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  +   +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400


>gi|71278179|ref|YP_270447.1| peptidyl-prolyl cis-trans isomerase D [Colwellia psychrerythraea
           34H]
 gi|71143919|gb|AAZ24392.1| peptidyl-prolyl cis-trans isomerase D [Colwellia psychrerythraea
           34H]
          Length = 638

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/409 (18%), Positives = 185/409 (45%), Gaps = 38/409 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+   AKI L ++ + F + G+    ++ S  ++V +V  + +   +F  ++
Sbjct: 1   MLEDIREKSQGLTAKIILGLIILTFAVAGVGS--YTNSVDTSVATVNGEPISQQAFNKAY 58

Query: 61  KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + + G ++Q+ G +   ++++        + +LDNL++   +DQ  E + +     R+  
Sbjct: 59  QAQRGRMAQQFGEMFDTLSNDANYMANFRQGVLDNLINEKLIDQNSEALAIRVSDLRLKE 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            I + P F   D  F ++ +++ + + G     ++ D+    ++R  +    +      N
Sbjct: 119 TIRKMPEFQ-VDGTFDNNRYLAIINQAGFFQSSDFRDYLRVEMTRRQLSQALIA--TEFN 175

Query: 177 LLLDQAKRFYFEN--RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           L   +  +   +N  R + +  ++     A  + ++  +  ++   +  ++  E  ++ Y
Sbjct: 176 LPYQEKLQLALQNQTRDIRFATISAEQFKATVELTDEEVNSYYLANQARFQNKEQVKVDY 235

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEA------ 286
           I  +V    K I ++++E+   Y++N   +     R +  ++  F +    DEA      
Sbjct: 236 ISLNVANIAKGINVTDEEVAKYYQENSASFTESAQRRISHILIEFNDGNADDEAAKIQAQ 295

Query: 287 --FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV----------SLADSIFSLAK 334
                L++G+ F  LA+E       +S  +FS E   D+          +  ++  +L  
Sbjct: 296 AVLARLEQGEDFAVLAKE-------VSNDTFSGENGGDLEWLEPGVMEETFDEAALALVN 348

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
            GD + ++  SFGY +  +++ K     +  +V+ ++ +++   +A EK
Sbjct: 349 VGDTSQLVKTSFGYHVLKLTDYKEEVVKALIDVQTELRSKLSNDQAQEK 397


>gi|254428426|ref|ZP_05042133.1| PPIC-type PPIASE domain protein [Alcanivorax sp. DG881]
 gi|196194595|gb|EDX89554.1| PPIC-type PPIASE domain protein [Alcanivorax sp. DG881]
          Length = 632

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 130/655 (19%), Positives = 257/655 (39%), Gaps = 81/655 (12%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           + K+ L  + +PF+I G        S    V  V   K+  S           +++Q++ 
Sbjct: 1   MGKVLLAAIILPFVISGFYGYFVGGSTGDVVAEVEGSKITRS-----------VVNQRVE 49

Query: 73  FVVNSERARSVGLDKKILDNLV------SGATLDQFI----EDIGLEADHGRVWGEIARS 122
            V N  R +S  ++  +LD+ V       G   +Q I    E   +     +V  +I + 
Sbjct: 50  RVRNMLREQSPNMNPALLDSFVRPEMVLDGIVNEQLILAAAEQSSMVFSEQQVAADIYKV 109

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLL-- 179
           PLF  +D KFS   F   L   G+N + YI        R D++   F  G   ++  L  
Sbjct: 110 PLFQ-EDGKFSEQRFERELRARGMNPQSYIQGL-----RQDMIKEQFRAGFMQTDFSLPS 163

Query: 180 --DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             ++ +R   ++R + Y  L+   +      S+  +  ++++ +  +  PE  ++SY+  
Sbjct: 164 ELNEQRRLGEQSRDIRYAQLDINSLRKQFSVSDEEVKAFYDENQGEFMRPEEFKVSYVEL 223

Query: 238 DVHEKEKKIEISNDELQAEYEKNK----EKYFSPEIRTVEQLVFPNQKEAD--------- 284
              +   ++ +++++++AEY+  K    E       R V  ++     + D         
Sbjct: 224 SADKYADQVSVTDEDVKAEYDVRKSIMEEAGAGDAPRQVSHILIEVNDDRDLEQAKVRAR 283

Query: 285 EAFQSLKKGKKF----IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           EA +++  G+ F     Q +++ G + S   LG  SK  +P+  + D+I  LA      P
Sbjct: 284 EAAKAIAGGESFADAAAQYSDDSGSAQSGGDLGVVSKGALPE-EMEDAIADLASGTVSAP 342

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
           V+  +  ++I            S  E+   I   ++  +A   + +D  +LEE L     
Sbjct: 343 VVTDAGVHLIKVTQEETARALPSLAELSDQIRADLKKARAEALLNDDVAKLEELLYEHAD 402

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT---VA 457
           +   + +     +    VD A  D       ++P  +Q L      D    + H    + 
Sbjct: 403 LQSPAEQVGTSVVTTDWVDLAAADAP----LSLPQVQQAL----NSDQVREQGHNSDLIE 454

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EG 514
           +    Y+ V+I E+        EEV   +++  K     E    K  QL  +  K   +G
Sbjct: 455 VDPTRYIAVRIAENKSPEPMPFEEVSFAIRERLK----GEHAMDKVQQLNEDAQKSIDDG 510

Query: 515 KNFRDIGKNLGASLLTTNQINR------MDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
            +   +    G  +     + R      M+  N  FG     +  + PV + +   + +G
Sbjct: 511 ADLAAVADLFGVEVEEQEGLQRGGAEPSMEVVNGAFGAPRFEEGEASPVALTR---LGDG 567

Query: 569 --LSYVVFKVTNSKVGPVQEKDKFISY--LTQMMNKDLLDSVIAYLKSQYSVTVH 619
             ++Y V +V +    P+ +  +  +   L  +  +     V+A L+ +  V +H
Sbjct: 568 SVVAYQVTRVADGNAEPLSDAQQQAALVELANVEGQRNFRQVVALLRDEGDVELH 622


>gi|167032914|ref|YP_001668145.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           GB-1]
 gi|166859402|gb|ABY97809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           GB-1]
          Length = 623

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 179/412 (43%), Gaps = 32/412 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V   + G      + + S     V  Q +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L ++ L  L+S   L Q  ED         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KFS D F   + + G    +    + +ML+   ++G    G+  S+ + D
Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQ----FREMLAEEMLIGQLRTGLAGSSFVTD 175

Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI--- 235
           Q    +   E ++ D+  L  +  PA    S   +   ++++   + +P+   I YI   
Sbjct: 176 QQVDAFARLEKQTRDFASLTFKADPAAVKVSEEEVKAHYDQHAKEFMSPDQVVIDYIELK 235

Query: 236 ---LFDVHEKEKKIEISNDELQAEYEKN-----KEKYFSPEIRTVEQLVFPNQKE--ADE 285
               FD      +++++++EL+A+YEK      ++++ +  +  V   V   Q +  A+E
Sbjct: 236 KSVFFD------QVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVTEAQAKARAEE 289

Query: 286 AFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
             Q L KG+ F  LA+E     G + +   LG F+   + D +  D+++ L + G  +  
Sbjct: 290 IEQRLAKGEDFAALAKEFSQDPGSANNGGDLG-FAGPGVYDPAFEDALYKL-QDGQVSTP 347

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           +   FGY +  +  ++     SF  +K  +   ++I    ++  +  K+L++
Sbjct: 348 VRTEFGYHLIKLLGVQAPEVPSFASLKDKLTRDLKIPLVEQRYVDASKQLQD 399


>gi|332141514|ref|YP_004427252.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551536|gb|AEA98254.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 565

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/428 (20%), Positives = 183/428 (42%), Gaps = 21/428 (4%)

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
           K +LD L++   + Q   ++GL     ++   I + P F     +F ++ F + L + G 
Sbjct: 24  KNVLDRLIAEKLIQQQATNMGLRVSDEQIRETIVQMPEFQFG-GQFDNERFQAILRQNGF 82

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
              ++ D+    +++  +           +  ++QA     + R+  Y+++++       
Sbjct: 83  QVADFRDYLRTQMTQNQLAAALTNSSFALDGEVEQANALQRQTRNAKYVLVSSDEFADSI 142

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           + ++A +  ++     ++   E  +++Y+   V + + ++ +  D ++  Y+ N   Y +
Sbjct: 143 EVTDADIEAFYNNNIASFDTEEQVKLAYVKLSVEDLKGRVSVDEDSVRTYYDNNLGSYGT 202

Query: 267 PEIRTVEQLVFPNQKEADEA---FQSLK----KGKKFIQLAEEQGKSLSDISLGS---FS 316
            E R V  ++     + D A    +SLK     G  F  LAE           G    F 
Sbjct: 203 EEQRRVSHILIEAGDDTDAAKAKAESLKAEIDSGADFAALAEANSDDTFSAENGGDLDFI 262

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
              + D +  ++ FSL   GD + V+   FGY I  ++ +K +   SF EV  +I + + 
Sbjct: 263 TPEMMDPAFDEAAFSLENVGDVSDVVETEFGYHIIKLTEVKEAQVKSFDEVAGEIRDTLL 322

Query: 377 ITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVD--FAGKDVKGKEVAAI 433
              A EK  E    L E    +  ++D+ +      ++DLP+ +     ++    E+++ 
Sbjct: 323 YDAAMEKYFELQNTLAEIAFEVPDTLDDAAN-----AVDLPIQESVLFSRNTAPAELSS- 376

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
           P    + F     ++ L+ D  + L D + +  ++ E  P R + L+EV   ++   K  
Sbjct: 377 PGLLDVAFSSELVEEGLNSD-IIELDDETVVVARVVEHQPQRTQSLDEVREGIEASVKAE 435

Query: 494 KTAEEVSS 501
           K+ E   S
Sbjct: 436 KSKEAAES 443


>gi|71066028|ref|YP_264755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           arcticus 273-4]
 gi|71039013|gb|AAZ19321.1| possible PpiC-type peptidyl-prolyl cis-trans isomerase
           [Psychrobacter arcticus 273-4]
          Length = 624

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/437 (19%), Positives = 183/437 (41%), Gaps = 51/437 (11%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF---IN 58
           ++ +R   ++W  +I L++   P  + G+          + +  VG   +  S +   +N
Sbjct: 1   MDKLRDFLKSWPGRILLILCLSPLALLGVESYFGGNVDPNQIAQVGEASIGLSEYQTAVN 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           + + EL      +  V ++       L +++L  L+    L+Q    +G+      +   
Sbjct: 61  NRRTEL------LDQVDDASLLNEDVLHEQVLKGLIDRTLLEQQAGKLGMTVSDDTINRL 114

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS----RTDVVGMFVGGMRP 174
           + +  +F G+D +FS+D F S L +  + + +    +   LS       +VG     M+ 
Sbjct: 115 LRQEEIFKGEDGEFSNDQFASFLRQRNMTKNQLFAEFRNQLSLDQLNASIVGTAAYPMKA 174

Query: 175 SNLLLDQAKRFYFENRSV--------DYIV---LNNRHVPAIADPSNAVLTQWFEKYKDN 223
            + L+D       E+R++        DY+    LN   + A           +++  KD 
Sbjct: 175 VSQLID----LQLESRNIWLHRFNWQDYVSQVKLNKSDIQA-----------YYDANKDT 219

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---Q 280
            ++     ++Y+       +   E++ ++LQ +YE  K+     + R + Q++      +
Sbjct: 220 LKSAAMVDLAYLQLSPQTIQVN-EVTKEDLQQQYEAYKQSLAVVDERKISQILLTGSDAK 278

Query: 281 KEADEAFQSLKKGKKFIQLAEEQ-----GKSLSDISLGSFSKE-YIPDVSLADSIFSLAK 334
             AD+    L KG+ F +LA+ +     G++  DI  G F+   +  D +  +       
Sbjct: 279 ARADKVKARLAKGEVFTKLAKTESDDPSGEAGGDI--GRFNPSVFGNDAAAVEKALEGLS 336

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            GD +  +  SFGY I  V+    S   S + ++ D+  + +  K  E   +    + + 
Sbjct: 337 VGDVSVPVKTSFGYQIFTVTEDSGSKIPSLESMRDDLTAKAKEYKRQEVYADKVTAINDL 396

Query: 395 LALGTSMDEISRREKIV 411
            A G S+++I+++E + 
Sbjct: 397 AADGFSIEDIAQQENVA 413


>gi|254360504|ref|ZP_04976653.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213]
 gi|153091044|gb|EDN73049.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213]
          Length = 623

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 167/397 (42%), Gaps = 40/397 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + +   V KI   ++ + F+I G+   L  +S  ++V  V  +++    F N+ 
Sbjct: 1   MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGL--ISQDNSVAKVNGEEISQQLFNNTL 58

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            +E   ++ ++G      + + E A     ++ +L+ L+    L Q+ +++ L     ++
Sbjct: 59  NREQNRLNAELGSRFWDLMDSPEYA--AQFNQSVLNGLIDEELLRQYAKELKLGISADQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  S +F  +D KFS++++   L    ++     D Y  ++    +      G+  S
Sbjct: 117 KSEIVNSQMFQ-QDGKFSNELYQQTLRHNNLS----ADGYAAIVQEGMLQSQLQEGIINS 171

Query: 176 NLLLDQAKRFYF-------ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
           +  +   +           E R  ++ V         ++     L  ++E  K    APE
Sbjct: 172 DFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQE---LRAYYEANKTKLLAPE 228

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
              + Y+     + E K+EI+N+++Q  Y++NK  Y +     +  +   ++ EA    Q
Sbjct: 229 KLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQ 288

Query: 289 SLKKGKKFIQLAEEQ---------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           +LK G+ F  LA+ +         G  L     G+F K +       D++ +L   G  +
Sbjct: 289 ALKNGEDFATLAKNKSSDTLSANNGGDLGWAKAGTFPKAF------EDAVANLT-AGQMS 341

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +     Y I  V   KP   +   +VK  IA  +R
Sbjct: 342 AAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIR 378


>gi|145632388|ref|ZP_01788123.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 3655]
 gi|144987295|gb|EDJ93825.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 3655]
          Length = 622

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 181/415 (43%), Gaps = 40/415 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   S +  AK  L ++ + FL+ G+S  LFS S  +    V  + +    F+N +
Sbjct: 2   LIEKMHNLSNSKAAKFILGLITLSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE    +Q+ G  F+  S+    V  L + I++ ++    L Q+++++ L      +  
Sbjct: 61  NQEFEARAQREGEAFMAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+  S  
Sbjct: 121 AIVTDPNFQVK-GKFDNSVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175

Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ 
Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI        K +++++ E+   Y+ NK ++ +  +  ++   F N+++A   ++ L+KG
Sbjct: 236 YIDLSADNISKNLQVTDIEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKVVYEELQKG 292

Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             F  +A  + KSL  IS      LG  +   +P  +  D+  +L + G ++  I+    
Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGN 348

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           Y   H+  ++     S + VK  I + +R +           +AS+K  ED K L
Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIVDLVRKSLIESRYFSLEKQASDKAFEDSKSL 400


>gi|325577782|ref|ZP_08148057.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160527|gb|EGC72653.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 625

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/439 (21%), Positives = 187/439 (42%), Gaps = 35/439 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + +++ K    ++ V FLI G+S  L+S S  S    V  + +    F+N +
Sbjct: 2   LIEKMHGIAHSFIGKAIFALIPVSFLIGGMSGYLYS-SNDSFAAKVNGETISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE    +Q+ G  F+  ++    V  L + ++  LV    + Q+ +++ L      +  
Sbjct: 61  NQEFEARAQQEGESFLAKTDSVEFVTALRQNLIQRLVDQELIRQYAKELKLGVSDEMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P     + KF +  +   L++ G+      D Y  +L     +     G+  S  
Sbjct: 121 AIVSDPNLQS-NGKFDNVRYQQLLSQNGLTS----DTYAAILRNALTLEQMQNGLADSEF 175

Query: 178 LL-----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
           ++     D A+ F F+ R      L      A    ++  +  +++    +   PE  ++
Sbjct: 176 VVPAQVKDNAQVF-FQKRIARLATLPLADEIAKQKVTDEEIKAYYDANAKSLVQPEQAKV 234

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
            YI    +E  K   ++  ++   Y++NK ++ S ++  ++      +KEAD  +Q LKK
Sbjct: 235 QYIHVSANELGKLQPVTETQIAQYYQENKAQFISQKLAHIQ---LSTEKEADSVYQELKK 291

Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGS 345
           G  F +LA  + KSL  +S      LG      +P  +  D+   L      TPV + G+
Sbjct: 292 GADFAELA--KTKSLDKLSGAQGGELGWVKDNELPK-NFEDAALLLNVGQYSTPVNVDGA 348

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           +     H+  ++     + +EVK+ IA+ +R   A  + +   K + E  A   S D ++
Sbjct: 349 Y-----HIILVQDRKERTLEEVKEQIADTVRKNLAESRFQAVEKAVREKAA--ESSDSLA 401

Query: 406 RREKIVSIDLPLVDFAGKD 424
                  + +   D+ GK+
Sbjct: 402 AVADAAGVKVEETDYFGKN 420


>gi|220905632|ref|YP_002480944.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869931|gb|ACL50266.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 639

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/428 (21%), Positives = 173/428 (40%), Gaps = 43/428 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-GRQKVPFSSFINS 59
           MLE IR  S++   K+   ++ + F+ WG+ +  F+   S T+V+V     +    F  +
Sbjct: 1   MLEYIRDKSQSLGVKLAFGLIILVFVFWGVGN--FNDRSSGTLVAVVNGDPISMREFELA 58

Query: 60  WKQ-ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           ++  E  ++    G     E+ +   L ++IL +L++   L Q     G+      +   
Sbjct: 59  YRNAEENLLRSNPGL--TREQLKQQQLGRQILRDLITQVLLSQEAARTGVSITPLELRMA 116

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           +     F  +  +F  +V+   LA + +   ++    ++ L R  +  M       +   
Sbjct: 117 VGNIKGFQNEKGQFDPEVYTRVLAAQRMAPAQFEQDMSRDLLRQKIFAMVT-----APAW 171

Query: 179 LDQA---KRFYF--ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           +D A   KRF F  E R VDYI +      A   PS+  +  ++E +K  +  P    ++
Sbjct: 172 VDPAESQKRFEFLREKRDVDYIFIPASDFAASVKPSDEEVQAYYESHKAQFAIPARADVA 231

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------- 286
           Y+L    +  K   IS+   +  Y  N  ++   E      ++ P  ++A EA       
Sbjct: 232 YVLVSPQDLVKASGISSAAAEKWYADNAARFEQQEEVKAAHILVPLAEDASEADVKKAQE 291

Query: 287 -----FQSLKKGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
                   LK GK F  +A+          G  L  +  G+  K +       D+ F+LA
Sbjct: 292 QAAAIEAELKAGKSFAAVADAHNGPNAAGPGGELGWLKRGTTVKPF------EDAAFALA 345

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             G  +  +   FG  I  V   K      F++V+ ++   M   + ++K+ +    L E
Sbjct: 346 -PGKVSAPVRSQFGLHIIKVEEKKDGGLPPFKQVEAEVLAAMAQEQGADKLHDVVDNLIE 404

Query: 394 FLALGTSM 401
              LG S+
Sbjct: 405 DNILGRSL 412


>gi|300691410|ref|YP_003752405.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
           solanacearum PSI07]
 gi|299078470|emb|CBJ51122.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
           solanacearum PSI07]
          Length = 637

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/392 (18%), Positives = 162/392 (41%), Gaps = 23/392 (5%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           + L+++F  F+ +G+      + GS     VG   +  S      +++   + Q +G   
Sbjct: 4   VLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRVREQTERLRQMLGAQY 63

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL---FHGKDNKF 132
           +  +     + + +LD ++    +      + L     +V   I + P        D KF
Sbjct: 64  DPRQFEGSQMRRDVLDGIIQQRVMVNEASRVNLSVADSKVRETIEQIPAVAQLRKPDGKF 123

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
             D ++  LA +G+  +++       L    +    V        L+D+      + R V
Sbjct: 124 DTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSTAFVPKSLVDRLIEARDQQREV 183

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
             ++L            +  +  +++ ++  +  PE  +  Y++F   +  K+I ++ ++
Sbjct: 184 QALLLKPADYAGKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVFSGEDMMKQIPVTPEQ 243

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLV--FPN----------QKEADEAFQSLKKGK-KFIQL 299
           L+  Y++N  ++ + E R    ++   P+          +K A+E    ++K    F +L
Sbjct: 244 LKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEEVLAEVRKTPGNFAEL 303

Query: 300 AE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           A+    + G +     LG  +K   +P     +++F+L + GD + V+   FG+ I  + 
Sbjct: 304 AKKYSGDPGSAAQGGELGFLAKGATVP--PFENALFALKQPGDISDVVESDFGFHIIKLE 361

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            +K     S + VK ++  ++R   A++K  E
Sbjct: 362 EVKGGGVQSLEAVKPELEREVRTQLANKKYTE 393


>gi|207724194|ref|YP_002254592.1| peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum MolK2]
 gi|206589405|emb|CAQ36367.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum
           MolK2]
          Length = 648

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/407 (18%), Positives = 168/407 (41%), Gaps = 24/407 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  + L+++F  F+ +G+      + GS     VG   +  S      
Sbjct: 1   MLDFVR-THRRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDARV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + Q +G   +  +     + + +LD ++    +        L     +V   I 
Sbjct: 60  REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRMMVNEASRTNLSVADTKVRETIE 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + P        D KF  D ++  LA +G+  +++       L    +    V        
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L+D+      + R V  ++L      +     +  +  +++ ++  +  PE  +  Y++F
Sbjct: 180 LVDRLIEARDQQREVQALLLKPADYASKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPN----------QKEADE 285
              +  K+I ++ ++L+  Y++N  ++ + E R    ++   P+          +K A+E
Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299

Query: 286 AFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFT 339
               ++K    F +LA+    + G +     LG  +K   +P    A  +F+L + GD +
Sbjct: 300 VLAEVRKTPGNFAELAKKYSGDPGSAAQGGELGFLAKGATVPQFDSA--LFALKQPGDIS 357

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            V+   FG+ I  +  +K     S + VK ++  ++R   A++K  E
Sbjct: 358 DVVQSDFGFHIIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTE 404


>gi|303326078|ref|ZP_07356521.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863994|gb|EFL86925.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           sp. 3_1_syn3]
          Length = 640

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 92/432 (21%), Positives = 179/432 (41%), Gaps = 39/432 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           ML+ IR  ++++  K+   V+ + F+ WG+    F+   S+ VV+ V    +    F  +
Sbjct: 1   MLDYIRSNAQSFGVKVAFGVIILVFVFWGVGS--FNDRNSANVVAIVNGDPILVQQFEQA 58

Query: 60  WKQ-ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           ++  E  ++    G  V  E+ +   L +++L +L+    L Q     G+      +   
Sbjct: 59  YRNAEESILRNNPG--VTREQLKEQHLGRQVLRDLIQQTLLAQEAARAGVSVTPLELRQA 116

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           + R   F     +F  + +   LA + I+  +Y    +  L R  +  +      P  + 
Sbjct: 117 VGRIKSFQDAQGRFDPEAYTRVLAAQRISPAQYEKDMSDQLLREKIFTLVTA---PVWVD 173

Query: 179 LDQAK-RFYF--ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            D+A+ R+ F  E R VDY+ +  ++       ++  +T +++ +K ++  P    ++Y+
Sbjct: 174 PDEAQNRYNFLREKRVVDYLFIPAKNFSGEVKVTDQDVTAYYDAHKKDFAIPPKVDVAYV 233

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--------NQKEADEAF 287
                   K   IS  + Q  YE NK ++  P       ++ P         +K+A E  
Sbjct: 234 SVTPGGLVKPESISEADAQKWYEANKSRFEEPAQVKAAHILVPLAENAPADAEKKAREEV 293

Query: 288 ----QSLKKGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
                 LK GK F  +A+          G  L  I+ G   K +       D+ F+L K 
Sbjct: 294 AKIQAELKSGKDFAAVADAHNGSNAAGPGGELGWITPGKTVKPF------EDAAFAL-KA 346

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G  +  +   FG  I  V + KP    +F++  +++   M   + ++K+ +    L E  
Sbjct: 347 GQVSEPVRSPFGLHIIKVEDKKPGGLKTFKDAAREVRQAMAQEQGADKLHDVLDSLIEDN 406

Query: 396 ALGTSMDEISRR 407
            LG  + E + R
Sbjct: 407 ILGKPLAESAAR 418


>gi|255322620|ref|ZP_05363764.1| conserved hypothetical protein [Campylobacter showae RM3277]
 gi|255300181|gb|EET79454.1| conserved hypothetical protein [Campylobacter showae RM3277]
          Length = 487

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 168/427 (39%), Gaps = 81/427 (18%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     F+ WG  D   + S +S+V  VG + +    F N + Q     SQ  
Sbjct: 17  WVSTIAFV--GAGFVGWGAYD--LNASRASSVAKVGHRNISIQEFQNRYGQLHAYYSQLF 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              ++ E A  +G++   L+ LV+ A L  F +D+GL  +   +   I     FH  + K
Sbjct: 73  DGQLSDENASELGIENLALEALVNDAMLLNFADDLGLGVNDEDIVKYIIADQNFHS-NGK 131

Query: 132 FSHDVFVSRLAREGINEKEY-------------------------IDHYTKMLSRTDVVG 166
           F  +++ + L R    E EY                         ID  T      D + 
Sbjct: 132 FDKELYKNTLKRARTTESEYEESLKNVILLDKLRHALNLPANAQDIDMLTASFLMQDKIS 191

Query: 167 MFVGGMRPSNLLLDQ--AKRFYFEN----RSVDYIVLNNRHVPAIADPSNA-VLTQWFEK 219
           + V       + +D+   K+ + E+    +++    L+ + +PAI+  +N   LT+++ +
Sbjct: 192 IKVVEANADEIKIDEDALKKLWEEHKNEYKTMTEFKLDTKFIPAISSDANTNELTEFYNE 251

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            K+ Y+  +            +K K+ E   DE+  +Y   + K                
Sbjct: 252 NKNEYKGSD------------DKIKEFEAVKDEVLKDYNLKQTK---------------- 283

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
            K A E +  +KK +K            +D+S+ +F      + SL      LAKKGD  
Sbjct: 284 -KVALEEYLKIKKDEK-----------QADVSVSTFE----DNASLPMDELKLAKKGDTL 327

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
                  GY+I  V  I     +SF E K+ I    +  K  E V+   K L E    GT
Sbjct: 328 KPFEYEDGYMIVKVKEIVAPRVMSFDEAKEQILELYKEQKTKEIVEAKAKELLEKGFQGT 387

Query: 400 SMDEISR 406
            +  +SR
Sbjct: 388 DIGFVSR 394


>gi|330817266|ref|YP_004360971.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia gladioli BSR3]
 gi|327369659|gb|AEA61015.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia gladioli BSR3]
          Length = 646

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/363 (19%), Positives = 148/363 (40%), Gaps = 32/363 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V SV   K+  + F  +++Q++    Q +G   ++++  +    +++LD ++    L
Sbjct: 39  SANVASVDGHKITRAEFDGAYRQQIDQARQALGANFDAKQFDTPERRQQLLDGIIEQRAL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
              +  + L A    V   +  +P+       D     + +   LA +G+   +Y +   
Sbjct: 99  TDEVRRLHLTASDNAVREALMSNPIIASLRKPDGSIDAERYTQLLAMQGMTPDQYQESVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             LS++ +    +        +  +      + R +  +VL      A   P++A L+ +
Sbjct: 159 YQLSQSQLPNNLINSAFTPRSVAQRLTDLAQQQREIQAMVLKPADYAAKVQPTDAQLSAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271
           ++ +K  +  PE   I Y++F         + S+ +L   YE N  ++ +  ++R     
Sbjct: 219 YDAHKQAFATPETASIQYLVFTPAAAAANAQPSDADLHKFYEDNTARFRTEAQVRVSHIF 278

Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                              EQL+       D+  Q  +K  +    A  +G  L  ++ G
Sbjct: 279 IAAARNASASDKAAAKAKAEQLLAEVTAHPDQFAQIAEKNSQDAPSA-AKGGDLGYVTRG 337

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S +       +  D+ F+L K G+ + V+    GY I   +++KP+    F EVK  IA 
Sbjct: 338 STAG----GPAFDDAAFAL-KPGELSKVVESDLGYHILKATDVKPAVVKPFDEVKDSIAT 392

Query: 374 QMR 376
           +++
Sbjct: 393 ELK 395


>gi|261496293|ref|ZP_05992697.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261308055|gb|EEY09354.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 623

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 167/397 (42%), Gaps = 40/397 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + +   V KI   ++ + F+I G+   L  +S  ++V  V  +++    F N+ 
Sbjct: 1   MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGL--ISQDNSVAKVNGEEISQQLFNNTL 58

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            +E   ++ ++G      + + E A     ++ +L+ L+    L Q+ +++ L     ++
Sbjct: 59  NREQNRLNVELGSRFWDLMDSPEYA--AQFNQSVLNGLIDEELLRQYAKELKLGISADQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  S +F  +D KFS++++   L    ++     D Y  ++    +      G+  S
Sbjct: 117 KSEIVNSQMFQ-QDGKFSNELYQQTLRHNNLS----ADGYAAIVQEGMLQSQLQEGIINS 171

Query: 176 NLLLDQAKRFYF-------ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
           +  +   +           E R  ++ V         ++     L  ++E  K    APE
Sbjct: 172 DFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQE---LRAYYEANKTKLLAPE 228

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
              + Y+     + E K+EI+N+++Q  Y++NK  Y +     +  +   ++ EA    Q
Sbjct: 229 KLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQ 288

Query: 289 SLKKGKKFIQLAEEQ---------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           +LK G+ F  LA+ +         G  L     G+F K +       D++ +L   G  +
Sbjct: 289 ALKNGEDFATLAKNKSSDTLSANNGGDLGWAKAGTFPKAF------EDAVANLT-AGQMS 341

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +     Y I  V   KP   +   +VK  IA  +R
Sbjct: 342 AAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIR 378


>gi|300703976|ref|YP_003745578.1| peptidyl-prolyl cis-trans isomerase (rotamase d) [Ralstonia
           solanacearum CFBP2957]
 gi|299071639|emb|CBJ42963.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
           solanacearum CFBP2957]
          Length = 649

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/407 (18%), Positives = 168/407 (41%), Gaps = 24/407 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  + L+++F  F+ +G+      + GS     VG   +  S      
Sbjct: 1   MLDFVR-THRRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDAVITTSELDARV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + Q +G   +  +     + + +LD ++    +        L     +V   I 
Sbjct: 60  REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRVMANEASRTNLSIADSKVRETIE 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + P        D KF  D ++  LA +G+  +++       L    +    V        
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARVRSELVLQQIPQSIVASAFVPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L+D+      + R V  ++L      +     +  +  +++ ++  +  PE  +  Y++F
Sbjct: 180 LVDRLIDARDQQREVQALLLKPADYVSKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPN----------QKEADE 285
              +  K+I ++ ++L+  Y++N  ++ + E R    ++   P+          +K A+E
Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNVARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299

Query: 286 AFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFT 339
               ++K    F +LA+    + G +     LG  +K   +P    A  +F+L + GD +
Sbjct: 300 VLAEVRKAPGNFAELAKKYSGDPGSAAQGGELGFLAKGATVPQFESA--LFALKQPGDIS 357

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            V+   FG+ I  +  +K     S + VK ++  ++R   A++K  E
Sbjct: 358 DVVQSDFGFHIIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTE 404


>gi|88608708|ref|YP_506523.1| rotamase family protein [Neorickettsia sennetsu str. Miyayama]
 gi|88600877|gb|ABD46345.1| rotamase family protein [Neorickettsia sennetsu str. Miyayama]
          Length = 594

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 109/226 (48%), Gaps = 4/226 (1%)

Query: 36  SVSGSST--VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93
           S++GS +  V SVGR+K+    F++ +K+          F +   + + +G+ + +L  L
Sbjct: 36  SITGSRSDVVASVGREKILVDDFVSEYKKHERYFQSMFDFRLTDTQLKDIGVGRIVLTTL 95

Query: 94  VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
           +    ++Q  + +GL  D      +I ++P+F+ ++ KF        L R  + E+EYI 
Sbjct: 96  IQDKVIEQLFKQMGLHIDTSIAIDKIKKNPVFN-ENGKFDRAKLDDFLDRNDLTEREYIR 154

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
              + + +  V G F         L +    F +  + V    ++   +P    P+ + L
Sbjct: 155 KVKREIGKDFVFGPFFNIQGEYGKLAELFYNFEYGLKEVSIAKVDKNALPTPPVPTESEL 214

Query: 214 TQWFEKYKDNYRAPEYKRISYILF-DVHEKEKKIEISNDELQAEYE 258
             ++E+ KD + + EY+  + IL  + + K + +E++++++Q  +E
Sbjct: 215 VSFYEENKDKFFSDEYRAAACILISEDNVKPELVEVADEDVQKSFE 260


>gi|291287880|ref|YP_003504696.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885040|gb|ADD68740.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 633

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/391 (21%), Positives = 170/391 (43%), Gaps = 42/391 (10%)

Query: 17  FLVVLFVP--FLIWGLSDALFS------VSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
           F++  FV   F +WG+ D + S      V G +      R KV  +   N ++Q  G   
Sbjct: 18  FVIAAFVGTIFFVWGVGDKVQSQLYAAKVDGVTITDQEFRDKVENTR--NQFRQLFGNNI 75

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
            +I         +   L+K +++ L++   L      + + A    V   I     F   
Sbjct: 76  DEI--------LKGDTLEKTVMETLITETLLRNEANRLNIPASDAEVAANIQSVQAFQ-T 126

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
           D +F   ++V  L+R  +  + +     + ++   +  +    +  S+  ++Q   F ++
Sbjct: 127 DGQFDQQLYVQLLSRNRLTPQIFESSIRRDITLKKIEDLIRQSVAVSDQEVEQ--EFIYQ 184

Query: 189 NR--SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
           N   ++ Y+ L   +     + ++  LT +F+++K+ YR PE     Y+ FD    + + 
Sbjct: 185 NTVATIRYLELGADNFIGNVEITDNALTAFFDEHKEQYRVPEKADFKYVTFDPETYKGEF 244

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKK-------GK 294
             S+ E++  + +NK  +  PE      ++F      ++K A E +Q  KK       G 
Sbjct: 245 ITSDKEIENYFIQNKASFNEPERVRAAHILFRVENWDDEKAATEIYQKAKKVRKEIVDGA 304

Query: 295 KFIQLAE---EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            F ++AE   E   + +   LG F++ + +P+    ++ F+    G+ + V+   FG+ I
Sbjct: 305 DFAKMAEKYSEDSTAQNGGELGFFTRGQMVPE--FENAAFT-TNPGEVSDVVKTQFGFHI 361

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
            +V    PS   +  EVK +IA  ++  K++
Sbjct: 362 INVEEYIPSTDPTLDEVKDEIAALIKDQKSA 392


>gi|323143442|ref|ZP_08078125.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066]
 gi|322416727|gb|EFY07378.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066]
          Length = 642

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 168/408 (41%), Gaps = 26/408 (6%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           +R+ ++  + KI   ++ + F+  G+   L     +  V  VG  K+      N W Q+ 
Sbjct: 6   LREGAQGRIFKILFWIIILSFIFTGVGGYLIPRLNTDPV-EVGEYKIT----ANEWNQQY 60

Query: 65  GMISQKIGFVVNSERARSV-------GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              +Q++  +  +  A  +        L  +IL+ ++     +  + D+ +     +V  
Sbjct: 61  TSQTQQMQRMYGARYADMLEDPQYVSNLRSQILEGMIDNVAFNSAVYDLNVRIGDEQVRE 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG--MFVGGMRPS 175
            I  +P F  KD KF +D++++ +   G+N  EY     ++ +    V   +      P 
Sbjct: 121 LIRTTPAFQ-KDGKFDNDLYLAVIRNMGMN-PEYFGEQMRISAMATSVSDPILRTASYPL 178

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
              +   +    + R++D   LN   + A     +     +++ + D + AP   + +YI
Sbjct: 179 PYEISALENLLTQTRTIDLYELNLDALRAGFSADDNEAKAYYDAHHDAFMAPANVKFNYI 238

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEADEAFQSL---- 290
           L  V E +K I  ++DEL+     +++ +  PE R    ++   +  +A++  +S+    
Sbjct: 239 LLTVDELKKGINPTDDELEEYLTLHQDDFKVPEHRGFSHIIVRSDNPDAEKIVKSIDDGF 298

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL----ADSIFSLAKKGDFTPVIHGSF 346
             GK F  LA+E    LS   +G    E I   SL    AD +F+L   G  T  I  + 
Sbjct: 299 AAGKSFADLAKEYSDDLSTKDIGGDMGEII-RASLAPIFADKLFALETIGSHTDKIVDAD 357

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           G     +++I         E+K  + N     KA E   E    L + 
Sbjct: 358 GTHYLQLNSIVKEHIPQLNEIKDQVKNACIDAKARELFNERVTTLSDM 405


>gi|322652369|gb|EFY48724.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
          Length = 481

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 99/493 (20%), Positives = 210/493 (42%), Gaps = 39/493 (7%)

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADP 208
           D Y + L         + G+  ++ +L    D+      + R V   V++   + A    
Sbjct: 8   DQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQV 67

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           ++  ++ ++++ K  +  PE  R+SYI  D    +  +  S+ ++QA Y+++ +++  PE
Sbjct: 68  TDQEVSSYYDQNKARFMTPEQFRVSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPE 125

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDV 323
                 +    + +A     +L KG+ F  LA+E+   +     G           +P++
Sbjct: 126 RIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATVPEL 185

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             A     L +KG  + VI  S G+++A + +I+P+      EV+ DIA +++     EK
Sbjct: 186 KNA----GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEK 237

Query: 384 VKEDYKRLEEFLALGTSMD--EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL- 440
             + Y  L++ ++   S D   ++  E++  +      +  +D   +E+   P  + +  
Sbjct: 238 ALDAYYALQQKVSDAASNDNESLAGAEQVAGVKAVETGWFSRDTLPEEMNFKPVADAIFN 297

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
             + G++     +  +   DG   + V++ E  P   + L EV   V    K  K  ++ 
Sbjct: 298 GGLVGENGTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQA 357

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGP 556
              A +L++E  K GK    + K  G S      ++R          D +SQ     S P
Sbjct: 358 KLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLP 408

Query: 557 VEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
            +    + + N +  + V+      K G  P  +K   +  +TQ   + + +++++ L+ 
Sbjct: 409 TKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEVQKKAMVQGITQNNAQIVFEALMSNLRK 468

Query: 613 QYSVTVHDNLIQR 625
           +  + + D L Q+
Sbjct: 469 EAKIKIGDALEQQ 481


>gi|317154730|ref|YP_004122778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944981|gb|ADU64032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 632

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 135/666 (20%), Positives = 272/666 (40%), Gaps = 89/666 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSS 55
           MLEI+R+ +  W+ KI   ++ V F+        F +SG  T     + +V  Q +  + 
Sbjct: 1   MLEIMRENASGWIVKILFGIIIVVFVF------AFGMSGLETGQDPILATVNDQIITRAE 54

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F +++++    + +     V   + +     + +L  L++   L      +G+ A    V
Sbjct: 55  FEDAFQRAAEGV-RTANPDVTPAQLQDPQFKQMVLGELINSRLLLHEAARLGISASDEEV 113

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
           +  I R   F  +   F  D++++ L    +    +  ++   +    + G     +R +
Sbjct: 114 FAAITRQSYFWNQAGAFDRDIYMAALRSIRMTPALFEANFKNEM----IAGKVQDMVRKT 169

Query: 176 NLLLDQAKRFYF----ENRSVDYIVLNNRHVPAIADPSNAV----LTQWFEKYKDNYRAP 227
            +   +  R  F    E   VDYI+ +    PA   P   V    + +++   +D +  P
Sbjct: 170 GVATPEQARQIFDWVGEEVRVDYILSS----PAAFAPQVRVDAKEVDEFYASNQDKFMVP 225

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEA 286
           E  RI Y+ F   +   + E+S+ E+ A +  N       E ++    L+  +  ++DE 
Sbjct: 226 EQVRIRYLAFTPKDLAARQEVSDPEIDAYFAANSASMKQEEQVKASHLLIMTSDSDSDEE 285

Query: 287 FQSLKK-----------GKKFIQLAEEQGKSLSDIS---LGSFSK-EYIPDVSLADSIFS 331
               +K           G  F  LA +  +  S      LG F + + +P+   A   FS
Sbjct: 286 QAEARKKIDAAYAKAKAGGDFATLARQNSEGPSAAGGGDLGWFGRGDMVPEFEQA--AFS 343

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              KG  +  +   FG+ I +V + K +  ++  EV+KDIA  +   KA+E+V +   + 
Sbjct: 344 -TPKGQVSEPVRTQFGWHIIYVEDRKEARELALDEVRKDIAIAIAEEKAAERVTDLLDQA 402

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG------ 445
            + L  G ++D ++    +++                 V + P  EQ L + FG      
Sbjct: 403 MDRLVSGMTLDAVADELGMLA-----------------VTSSPLPEQGLVQNFGLTPEAA 445

Query: 446 ---KDDPLSKDHTVALP-DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
               D   ++ H   L  +G YM V+  E IPA    ++EV   ++      K A    +
Sbjct: 446 TVVMDIQKNESHKTPLSINGGYMLVEKVEDIPAAPLPIDEVRDAIEGAITQQKAAALAMT 505

Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE--- 558
           +A +++ + +  G +  +      A + T+   +R  N         +++   G      
Sbjct: 506 EAQEILAQLT--GPDSAEAAARYAARIKTSEPFDRQGNVPALGQSQALAEAAFGSAGKEW 563

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMMNKDLLDSVIAYLKS 612
           + + F ++ G+  +V ++  S+V P  E      KD +I   +Q    ++L++ +  L+ 
Sbjct: 564 LPQPFAMQQGI--IVARL--SEVIPASEETWAEQKDAWIDQASQNYQLEVLNAYMTGLRQ 619

Query: 613 QYSVTV 618
           Q  + +
Sbjct: 620 QADIEI 625


>gi|261346360|ref|ZP_05974004.1| peptidyl-prolyl cis-trans isomerase D [Providencia rustigianii DSM
           4541]
 gi|282565674|gb|EFB71209.1| peptidyl-prolyl cis-trans isomerase D [Providencia rustigianii DSM
           4541]
          Length = 622

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 83/387 (21%), Positives = 160/387 (41%), Gaps = 31/387 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59
           M+E +R  + +   K+ L ++ + F++ G+  A + + GSS     V  Q +       +
Sbjct: 1   MMEDLRTKANSPFIKVLLAIIILSFVLTGV--AGYVIGGSSNDAAEVNGQPISREQLQQA 58

Query: 60  WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
           ++QE   + + +G        N E  +   L  + L+NL++   ++Q+  ++ L A   +
Sbjct: 59  FQQERQSLQEYLGDKFAEVASNDEYMKE--LRTQALNNLINTQLINQYANELNLSASDKQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--M 172
           +   I    +F   D KF  + +   L+R  IN   +     + L R  +   F G    
Sbjct: 117 IEQAIFAMQIFQ-TDGKFDSEKYREILSRYNINADSFAAQIRQDLVRAQLGKSFTGTEFA 175

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            PS +        + + R V   +L    V A    +   L  +++  ++++ +PE  ++
Sbjct: 176 LPSEV--KAYAELFMQQREVRTAMLPLAEVQAKQTVTEEELKAYYDANQNSFISPEQVQV 233

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           SY+  D     K   ++++E+   Y++N + +   E +    +   ++K+A      LK 
Sbjct: 234 SYVEMDAASMPKAT-VNDEEITTYYQQNLKNFTKAEQKLYSMIQVASEKDAQALETELKN 292

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKE------YIPDVSLADSIFS--LAKKGDFTPVIHG 344
           G  F  LA E+       S   FS        ++   S    I S  L +KG  +  I  
Sbjct: 293 GADFAALAAEK-------STDKFSASNKGVIGWMEAASTPSEIISANLTEKGQVSAPIKV 345

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDI 371
              YV+  + +I P       EVK  I
Sbjct: 346 QDNYVLFRLDDITPEAIKPLDEVKDSI 372


>gi|241758711|ref|ZP_04756824.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114]
 gi|241320919|gb|EER57132.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114]
          Length = 617

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 171/401 (42%), Gaps = 48/401 (11%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A+I L ++ + F+ +G ++   S  GS  +V VG +KV   +   + + E     Q  G 
Sbjct: 12  AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAG- 63

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             N+  +R       I  +L+  A L Q  + +G+     ++   I   P FH    KFS
Sbjct: 64  --NNAPSRDA-----IFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D+    L +  + E ++++   +     +++ +   G   S+    Q        R++ 
Sbjct: 117 QDLLKKYLDQRKMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               +     A     +A L +++E +K +Y  P+  ++ Y+  ++ +   K  +S +E+
Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALNIKDLADKQTVSAEEV 236

Query: 254 QAEYEKNKEKYFSP--EIRTVEQLVFPNQKEA---------DEAFQSLKKGK-KFIQLAE 301
           Q  Y+ +K    SP  EI  +   V PN  EA         D+    LK     F +LA 
Sbjct: 237 QKAYD-SKSVDLSPRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDAFAELAA 295

Query: 302 EQGKSLSDI----SLGSFSKE----YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +  K LS      +LG  SK     + P+   A   F+L  KG+ +  I  S GY +  V
Sbjct: 296 KYSKDLSSSNKGGNLGYLSKSGGSGFGPEFDKA--AFALG-KGEVSDTIKSSLGYHVIKV 352

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS-------EKVKED 387
            N++   T   ++ K  I   +++ KA+       EK+ ED
Sbjct: 353 LNVEAEPT--LEQAKARIEAALKLKKAASAFNAAKEKLGED 391


>gi|121609649|ref|YP_997456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
 gi|121554289|gb|ABM58438.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
          Length = 643

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 87/423 (20%), Positives = 173/423 (40%), Gaps = 58/423 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M E IRK S+  +  IFL +L +P F++ G     FS   S  V  V    +  + +  +
Sbjct: 1   MFETIRKHSK--IVMIFLFLLIIPAFVLVGTDRNYFS-EASPVVARVDGHDISQADWDRA 57

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDN-LVSGATLDQFIEDIGLEA-------- 110
            +QE   I           RA+S  +D ++LD+ L   ATL++ + +  L+A        
Sbjct: 58  HRQESDRI-----------RAQSPTVDARLLDSPLARYATLERLVRERVLDAAAQQMRLV 106

Query: 111 -DHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
               R+   +  +P        D     D + + L  +G+  + +  +  + ++   V+ 
Sbjct: 107 TSDARLIRSLQETPAIAALKRADGTLDADAYRALLVGQGVTPEVFEANLRRNIAADQVLD 166

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
             +     +N     A    +E R +     +         P++A L  +++ +   +R 
Sbjct: 167 AVLSTALVANAQARLALDALYERRDIQVARFDAPDFAGRVLPTDADLQSYYDAHPAQFRQ 226

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADE 285
           PE   + Y++ D+      I +  DEL++ Y+ +   +  + + R    ++    K+A  
Sbjct: 227 PEQATVEYLVLDLDSVRATITVPEDELRSYYDSDYLPRIMAKQERRASHILISVAKDAPA 286

Query: 286 AFQSLKKGKK-------------FIQLAEEQ---------GKSLSDISLGSFSKEYIPDV 323
           A +   K +              F  LA++          G  L+  + G+ +K +    
Sbjct: 287 AEREKAKARATELLAQLRKTPADFAPLAKQSSDDKGSAAAGGDLNFFARGAMTKPF---- 342

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              +++F+L KKG  + V+   FGY I  +++IK      F+E +  IA ++   +A  +
Sbjct: 343 --EEAVFAL-KKGQISDVVETEFGYHIIELTDIKTPPQPGFEEARAVIAAELGQQRAQRQ 399

Query: 384 VKE 386
             E
Sbjct: 400 FAE 402


>gi|94310820|ref|YP_584030.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
           metallidurans CH34]
 gi|93354672|gb|ABF08761.1| Peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans
           CH34]
          Length = 647

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 111/536 (20%), Positives = 213/536 (39%), Gaps = 60/536 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +R  +  + LV++F  F+ +G+      +  S     V  + +      N  
Sbjct: 1   MLDFVRN-NRRLMLLLLLVLVFPSFVFFGVESYSRFMDSSHDAAKVDGRAITVQEVDNVV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   + Q +G   +          + +LD L+    + +  +   L     ++   I 
Sbjct: 60  RDQSERMRQMLGNNYDPRMFEGPAARQAVLDQLIQQRVISEATQKKHLTVSDAQIAAAIQ 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG--GMRPS 175
             P        D KF    +V  LA +G+   E +D   +    T  +G  +G     P 
Sbjct: 120 SIPAIAQLRTADGKFDEKAYVQLLAAQGMT-PEQLDARMRFELSTQQLGGAIGTTAFVPK 178

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +LL D+      + R V  IV+      A   P  A L  ++E +   Y  PE  ++ Y+
Sbjct: 179 SLL-DRLIAIRDQQRDVQAIVIKPADFTAKVTPDAAALKAYYESHLAAYTMPEQAKVEYL 237

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           +           I+ D+L++ Y+ N +++ + E R    ++    K+  EA +   K K 
Sbjct: 238 VLSGDALAASQTITPDQLKSYYDSNIQRFHTDEQRRASHILIAAPKDGKEADRKAAKEKA 297

Query: 296 -------------FIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
                        F  +A+         E+G  L  +  G+  K +       D++F+L 
Sbjct: 298 EKLLEDLRKHPDTFADVAKKNSQDPGSAEKGGDLGFMGRGALVKPF------EDAMFAL- 350

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-- 391
           K G  + V+   +GY I  ++ IKP+ T   + V+ ++  +++   A++   E       
Sbjct: 351 KDGQISDVVETDYGYHIIKLTGIKPAATEPLEAVRPELEIELKKQLAAKAYTEQADAFGN 410

Query: 392 ---EEFLALGTSMDE----ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
              E+  +L  + D+    I   + +     P++   GKD         P   + + +  
Sbjct: 411 MVYEQSESLKPAADKFKLTIQTADNVTRTPNPVL---GKDN--------PLNNEKVLKAL 459

Query: 445 GKDDPL-SKDHTVALPDGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
             DD + +K +T A+  G    V  +I +  PA  RK EEV   V++ +   + AE
Sbjct: 460 FSDDAIKNKRNTEAVQVGPTTLVSARIVDYRPAAARKFEEVEALVRQAYVAQQAAE 515


>gi|118594828|ref|ZP_01552175.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
           bacterium HTCC2181]
 gi|118440606|gb|EAV47233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
           bacterium HTCC2181]
          Length = 627

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 85/399 (21%), Positives = 176/399 (44%), Gaps = 28/399 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR ++ + +AK+ L ++ +PF ++G+   L SV  +  +  V    +    + N+ 
Sbjct: 1   MLDKIRNSTDSKLAKVILAIIIIPFALFGIDSYLSSVGSNVYIAKVNGVDISAQQYQNTE 60

Query: 61  KQELGMISQKIGFVVNSERA--RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
                MI +++    N++ A   S    K +LDNL+S   ++Q I+  G    + ++   
Sbjct: 61  ----AMIREQMT-DPNTDPALFDSPEFKKAVLDNLISTELMNQSIDKNGFVISNEQLSSY 115

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I   P F  ++ KFS + +   +    +  K+  D     ++           +   N +
Sbjct: 116 IVGMPDFQ-ENGKFSQERYDQIVQYNNLTPKKLEDRIRTQMATQQAKDSINRLIYVPNEI 174

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                   ++ R +    +          P++  + Q++++   N+  P+  +I ++++ 
Sbjct: 175 TQPLVNLAYQKRDISLHEIRLDDYKKKIKPTDDEVKQFYDENTSNFIMPDRVKIEFLIYS 234

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ---------KEADEAFQS 289
           V      I +SN+E +  ++ NK K+ + + R  + ++F  Q         +  D A  +
Sbjct: 235 VAGIVPTISVSNEEARQFFDANKGKFEANQQRRAKHILFAYQPGIDFEEKARIRDLAQTT 294

Query: 290 LKKGKKFIQLAEEQGKSLSDIS--------LGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           L + KK  ++ E + K LS  +        LG FS+  +     AD++F L   G  + +
Sbjct: 295 LNEIKKSPKIFENKVKELSQDTESAKQGGDLGFFSRGDMVK-PFADAVFGLKVDG-LSGL 352

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           +   FG  I  +++IK    VSF ++K  I  ++   KA
Sbjct: 353 VETEFGLHIIKLTDIKGE-QVSFDKIKTQIKGELLYGKA 390


>gi|225075250|ref|ZP_03718449.1| hypothetical protein NEIFLAOT_00253 [Neisseria flavescens
           NRL30031/H210]
 gi|224953425|gb|EEG34634.1| hypothetical protein NEIFLAOT_00253 [Neisseria flavescens
           NRL30031/H210]
          Length = 617

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 171/401 (42%), Gaps = 48/401 (11%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A+I L ++ + F+ +G ++   S  GS  +V VG +KV   +   + + E     Q  G 
Sbjct: 12  AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAG- 63

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             N+  +R       I  +L+  A L Q  + +G+     ++   I   P FH    KFS
Sbjct: 64  --NNAPSRDA-----IFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D+    L +  + E ++++   +     +++ +   G   S+    Q        R++ 
Sbjct: 117 QDLLKKYLDQRKMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               +     A     +A L +++E +K +Y  P+  ++ Y+  ++ +   K  +S +E+
Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALNIKDLADKQNVSAEEV 236

Query: 254 QAEYEKNKEKYFSP--EIRTVEQLVFPNQKEA---------DEAFQSLKKGK-KFIQLAE 301
           Q  Y+ +K    SP  EI  +   V PN  EA         D+    LK     F +LA 
Sbjct: 237 QKAYD-SKSVDLSPRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDAFAELAA 295

Query: 302 EQGKSLSDI----SLGSFSKE----YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +  K LS      +LG  SK     + P+   A   F+L  KG+ +  +  S GY +  V
Sbjct: 296 KYSKDLSSSNKGGNLGYLSKSGGSGFGPEFDKA--AFALG-KGEVSDTVKSSLGYHVIKV 352

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS-------EKVKED 387
            N++   T   ++ K  I   +++ KA+       EK+ ED
Sbjct: 353 LNVEAEPT--LEQAKARIEAALKLKKAASAFNAAKEKLGED 391


>gi|303253594|ref|ZP_07339732.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245913|ref|ZP_07527996.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247999|ref|ZP_07530028.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307254886|ref|ZP_07536708.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257049|ref|ZP_07538824.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259327|ref|ZP_07541054.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|302647514|gb|EFL77732.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306853132|gb|EFM85354.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855397|gb|EFM87571.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306862127|gb|EFM94099.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864420|gb|EFM96328.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866563|gb|EFM98424.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 625

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 80/395 (20%), Positives = 167/395 (42%), Gaps = 36/395 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + ++  V KI   ++ + F+I G+   L  V G +  V V   ++   +F  + 
Sbjct: 1   MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G      +   E A+    ++ +L+ LV    L Q+ +++ L     ++
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQ--FNQSVLNGLVDEELLRQYAKELKLGISAEQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  SP+F  +D KFS+D++   L   G++     D Y  +++   +      G+  S
Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLS----ADGYAAIVNEGMLFSQIQEGVIGS 171

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA----PEYKR 231
           +  + + +    +       V    +  A    + A   +  +KY D +++    PE   
Sbjct: 172 DFNVPEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLT 231

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           + Y+     +    +++++++++  YEKNK  Y +        +   N+ +A    + +K
Sbjct: 232 VEYVTLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVK 291

Query: 292 KGKKFIQLAE---------EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPV 341
            G  F +LA+          QG  L     G+F K +     SL D        G  + V
Sbjct: 292 NGADFAELAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQD--------GQVSAV 343

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           ++    Y I  V   K    +  ++VK  I   +R
Sbjct: 344 VNVDGAYHIIKVLERKAETVIPLEQVKDQITKTIR 378


>gi|308270798|emb|CBX27408.1| hypothetical protein N47_H22300 [uncultured Desulfobacterium sp.]
          Length = 632

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 92/439 (20%), Positives = 192/439 (43%), Gaps = 26/439 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK + +W+ K  L ++ V F+ WG+    F  + ++ V  V  + +    +  ++
Sbjct: 1   MLDFMRKNAGSWMIKAILGIIVVVFVFWGVGS--FRSNRANRVAKVNGEVITVREYQEAY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
              +  I  K+G   N E  ++    KK LD+L+    L Q  + +        +   I 
Sbjct: 59  NNLVEQIRAKLGTNYNEETLKAFNFKKKALDDLIVKKLLVQEAKKLKFRVTDDELVKLIG 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F   D  F+   +   L+R      E+     + L    ++      ++ S+    
Sbjct: 119 SIKAFQV-DGVFNKKEYERVLSRNHTVPDEFEATVRESLIMERLISFITSSVKVSDNEAL 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +   +   + +VDY+         I +PS   L ++F+K K++YR  +  +++Y+LF   
Sbjct: 178 EWFNWKGASVNVDYVFFTPDKYNGI-NPSQKELNEYFDKNKESYRTEKKVKVAYLLFSPD 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288
               ++++ ++E++  YE N +K+ +PE      ++    + A            D  F+
Sbjct: 237 SFITQVKVDDNEVKEYYENNIDKFTNPETVEASHILCKIDEGANPAAVQAAKQKADNVFK 296

Query: 289 SLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            +K+G+ F +LA++     S      LG+F K+ + +   A   FS+ K+G+ +  +   
Sbjct: 297 MIKEGQPFEELAKKYSDCPSKADGGHLGAFGKKDMVE-PFASKAFSM-KQGEISEPVLTK 354

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE-DYKRLEEFLALGTSMDEI 404
           FG+ I  V  +     +  +E + +I  ++     SEK K+  Y   E+   L  +M+++
Sbjct: 355 FGWHIIKVEKVNKEKMLVLKEAESEIRKKL----ISEKAKKLAYDEAEKICDLAINMNDL 410

Query: 405 SRREKIVSIDLPLVDFAGK 423
            +  +   + +   DF  K
Sbjct: 411 IKASEKSGVKIKTTDFFSK 429


>gi|93006476|ref|YP_580913.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           cryohalolentis K5]
 gi|92394154|gb|ABE75429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           cryohalolentis K5]
          Length = 624

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 79/421 (18%), Positives = 176/421 (41%), Gaps = 21/421 (4%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF---IN 58
           ++ +R   ++W  +I L++   P  + G+          + +  VG   +  S +   +N
Sbjct: 1   MDKLRDFLKSWPGRILLILCLSPLALLGVESYFGGNVDPNQIAQVGEASIGLSEYQTAVN 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           + + EL      +  V ++       L +++L  L+    L+Q    +G+      +   
Sbjct: 61  NRRTEL------LDQVDDASLLNEDVLHEQVLKGLIDRTLLEQQAGKLGMTVSDDTINRL 114

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           + +  +F G D +FS+D F S L +  + + +  D +   LS   +    VG        
Sbjct: 115 LRQEEIFKGADGEFSNDQFASFLRQRNMTKNQLFDEFRNQLSLDQLNASIVGTAAYPMKA 174

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           + Q      E R++     N +   +    S   +  +++  KD  ++     ++Y+   
Sbjct: 175 VSQLINLQLEARNIWLHRFNWQDYVSKVKLSKNDIQAYYDANKDTLKSAAMVDLAYLQLS 234

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---QKEADEAFQSLKKGKK 295
               +   E++ ++LQ +YE  K+     + R + Q++      +  AD+    L KG+ 
Sbjct: 235 PQTIQVN-EVTKEDLQQQYEAYKQSLAVVDERKISQILLTGSDAKARADKIKARLAKGEA 293

Query: 296 FIQLAEEQ-----GKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           F ++A+ +     G++  DI  G F+   +  D +  +        GD +  +  SFGY 
Sbjct: 294 FAKVAKAESDDPSGETGGDI--GRFNPSVFGNDAAAVEKALEGLSVGDISVPVKTSFGYQ 351

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           I  V+    +   S + ++ D+  + +  K  E   +    + +  A G S+++I+++E 
Sbjct: 352 IFTVTEDNGNKIPSLESMRDDLIAKAKEYKRQEIYADKVTAINDLAADGFSIEDIAQQEN 411

Query: 410 I 410
           +
Sbjct: 412 V 412


>gi|299066735|emb|CBJ37929.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
           solanacearum CMR15]
          Length = 637

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/392 (18%), Positives = 159/392 (40%), Gaps = 23/392 (5%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           + L+++F  F+ +G+      + GS     VG   +  S      +++   + Q +G   
Sbjct: 4   VLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRVREQTERLRQMLGAQY 63

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL---FHGKDNKF 132
           +  +     + + +LD ++    +        L     +V   I + P        D KF
Sbjct: 64  DPRQFEGPQMRRDVLDGIIQQRVMVNEASRANLSVADSKVRETIEQIPAVTQLRKPDGKF 123

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
             D ++  LA +G+   ++       L    +    V        L+D+      + R V
Sbjct: 124 DTDAYIKLLAAQGMTPDQFDARVRSELVLQQIPQSIVSSAFVPKSLVDRLIEARDQQREV 183

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
             ++       A     +  +  +++ ++  +  PE  +  Y++F   +  K+I ++ ++
Sbjct: 184 QALLFKPADYAAEVTADDKAIQAYYDAHQQEFAVPEQVKAEYVVFSGEDMMKQIPVTPEQ 243

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLV--FPN----------QKEADEAFQSLKKGK-KFIQL 299
           L+  Y++N  ++ + E R    ++   P+          +K A+E    ++K    F +L
Sbjct: 244 LKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEEVLAEVRKSPGSFAEL 303

Query: 300 AE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           A+    + G +     LG  +K   +P     +++F+L + GD + V+   FG+ I  + 
Sbjct: 304 AKKYSGDPGSAAQGGELGFLAKGATVP--PFENALFALKQPGDISDVVESDFGFHIIKLE 361

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            +K     S   VK ++  ++R   A++K  E
Sbjct: 362 EVKGGGVQSLDAVKPELEREVRTQLANKKYTE 393


>gi|91775766|ref|YP_545522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
           flagellatus KT]
 gi|91709753|gb|ABE49681.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
           flagellatus KT]
          Length = 626

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 89/416 (21%), Positives = 174/416 (41%), Gaps = 61/416 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S+ W+AK+ L  + +PF + G+   L     S  V  V  + +    + N+ 
Sbjct: 1   MLEAIRNRSKGWLAKVILAAITIPFALVGVDSYLRDAGSSVAVAKVDGESITVQEYSNAL 60

Query: 61  K------QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
           +      Q  G + Q +  +   E      L + ++D+LV G  L   ++         +
Sbjct: 61  QNLRNRLQSEGKVDQAV--IDGPE------LKQAVIDHLVEGRLLANEVKRAKFVVSDEQ 112

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY-TKMLSRTDVVGMFVGGMR 173
           +   I +   FH +D +FS  ++   LA       ++ +   T +L+     G+      
Sbjct: 113 LSHYIMQEESFH-QDGQFSQALYDQFLAERRRTPSQFENEVRTDLLTMQAREGLSALAFV 171

Query: 174 PSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
           P+ +  +  K  +        E R+ DY+      V    D  NA    ++++++D ++ 
Sbjct: 172 PNGVANNAIKVAHQSREVSIAEFRTADYL----SQVKVTEDEVNA----YYKEHQDKFKV 223

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PN 279
           PE  ++ ++L   +      +++ +E +  Y +N  ++   E R    ++        P 
Sbjct: 224 PEQVKLEFVLLSANALIPSQQVTEEEAREYYAQNAAQFQGDEQRRASHILIGFGVSPTPE 283

Query: 280 QKE-----ADEAFQSLKKG-KKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVS 324
            K+     A+E    +KK  ++F QLA +         +G  L     G+  K +     
Sbjct: 284 TKQKAKEKAEEVLALVKKNPERFEQLAHQYSQDPGSKDKGGDLGLFGPGTMVKPF----- 338

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
             D++FS+ K G  + ++   FGY I  ++ I  S   SF++V+  I  ++   KA
Sbjct: 339 -EDAVFSM-KPGTISDLVETDFGYHIIKLTEIHGSGQ-SFEDVQGQIRAELMYQKA 391


>gi|26989028|ref|NP_744453.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           KT2440]
 gi|24983852|gb|AAN67917.1|AE016424_3 peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas putida
           KT2440]
          Length = 623

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/405 (20%), Positives = 175/405 (43%), Gaps = 18/405 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V   + G      + + S     V  Q +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L ++ L  L+S   L Q  ED         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KFS + F   + + G    ++     +ML    ++G    G+  S+ + D
Sbjct: 121 QTPEFQ-VDGKFSAERFDQVIRQMGYGRMQF----REMLGEEMLIGQLRTGLAGSSFVTD 175

Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           Q    +   E ++ D+  L  +  PA    S+  +   ++++   + +P+   I YI   
Sbjct: 176 QQVDAFARLEKQTRDFASLTFKADPAAVKVSDEEVKAHYDQHAKEFMSPDQVVIDYIELK 235

Query: 239 VHEKEKKIEISNDELQAEYEKN-----KEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLK 291
                 +++++++EL+A+YEK      ++++ +  +  V   V   Q +  A+E  Q L 
Sbjct: 236 KSAFFDQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVTDAQAKARAEEIEQRLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  +     + G    F+   + D +  ++++ L + G  +  +   FGY
Sbjct: 296 KGEDFAALAKEFSQDPGSANTGGDLGFAGPGVYDPAFEEALYKL-QDGQVSAPVRTEFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            +  +  ++     SF  +K  +   +++    ++  +  K+L++
Sbjct: 355 HLIKLLGVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQD 399


>gi|17546434|ref|NP_519836.1| peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Ralstonia solanacearum GMI1000]
 gi|17428732|emb|CAD15417.1| probable peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 648

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/407 (18%), Positives = 167/407 (41%), Gaps = 24/407 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  + L+++F  F+ +G+      + GS     VG   +  S      
Sbjct: 1   MLDFVR-THRRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + Q +G   +  +     + + +LD ++    +        L     +V   I 
Sbjct: 60  REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVMVNEASRANLSVADSKVRETIE 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + P        D KF  D ++  LA +G+  +++       L    +    V        
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L+D+      + R V  ++       A     +  +  +++ ++  +   E  +  Y++F
Sbjct: 180 LVDRLIEARDQQREVQALLFKPADYAAKVTVDDKAIQAYYDAHQQEFAVLEQVKAEYVVF 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPN----------QKEADE 285
              E  K+I ++ ++L+  Y++N  ++ + E R    ++   P+          +K A+E
Sbjct: 240 SGEEMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299

Query: 286 AFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFT 339
               ++K    F +LA+    + G +     LG  +K   +P     +++F+L + GD +
Sbjct: 300 VLAEVRKSPGSFAELAKKYSGDPGSAAQGGELGFLAKGATVP--PFENALFALKQPGDIS 357

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            V+   FG+ I  + ++K     S   VK ++  ++R   A++K  E
Sbjct: 358 DVVESDFGFHIIKLEDVKGGGVQSLDAVKPELEREVRTQLANKKYTE 404


>gi|319638362|ref|ZP_07993124.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102]
 gi|317400111|gb|EFV80770.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102]
          Length = 617

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 139/631 (22%), Positives = 258/631 (40%), Gaps = 77/631 (12%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A+I L ++ + F+ +G ++   S  GS  +V VG +KV   +   + + E     Q  G 
Sbjct: 12  AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAG- 63

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             N+  +R       +  +L+  A L Q  + +G+     ++   I   P FH    KFS
Sbjct: 64  --NNAPSRDA-----VFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D+    L +  + E ++++   +     +++ +   G   S+    Q        R++ 
Sbjct: 117 QDLLKKYLDQRRMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               +     A     +A L +++E +K +Y  P+  ++ Y+   + +  +K  +S +E+
Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALSIKDLAEKQTVSAEEV 236

Query: 254 QAEYEKNKEKYFSP--EIRTVEQLVFPNQKEA---------DEAFQSLKKGK-KFIQLAE 301
           Q  Y+ +K    SP  EI  +   V PN  EA         D+    LK     F +LA 
Sbjct: 237 QKAYD-SKSVDLSPRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDSFAELAA 295

Query: 302 EQGKSLSDI----SLGSFSKE----YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +  K LS      +LG  SK     + P+   A   F+L  KG+ +  +  S GY +  V
Sbjct: 296 KYSKDLSSSNKGGNLGYLSKSGGSGFGPEFDKA--AFALG-KGEVSDTVKSSLGYHVIKV 352

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS-------EKVKEDYKRLEEFLALGTSMDEISR 406
            N++   T   ++ K  I   +++ KA+       EK+ ED       LA   +   +  
Sbjct: 353 LNVEAEPT--LEQAKARIEAALKLKKAASAFNAAKEKLGEDTFNDPSSLAKAVANSGL-- 408

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSYM 464
             K+ S+D  +     K+      A +P  E L+   F  DD L K H   V   +   +
Sbjct: 409 --KVESLDEWVTKAGAKE------AGLP--EALINAAFS-DDVLKKKHNSEVIAINNDTV 457

Query: 465 WVQIKESIPARDRKLEEV--LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
           WV     I A++ + E++    +VK    TV+ A  + S+A +L  + ++E       GK
Sbjct: 458 WV-----IRAKEVREEKIAPFAEVK---DTVRAA-YLRSEAVKLAEKKAQETLAALKAGK 508

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
                    +Q++  D           + + + PV     + +  G+   V     S   
Sbjct: 509 TADVQWSPVSQLSAQDARKTMSPEAYAALLKARPVGGKPAYTLLEGMPAPVIMEVQSVSA 568

Query: 583 PVQEKDKFIS---YLTQMMNKDLLDSVIAYL 610
           P     +  +    L Q ++ ++ D+++ YL
Sbjct: 569 PENADSQIPASKQALVQQLSANVFDALLQYL 599


>gi|209521454|ref|ZP_03270162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
 gi|209498110|gb|EDZ98257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
          Length = 644

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/404 (20%), Positives = 166/404 (41%), Gaps = 25/404 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +  + LV+L  P L + G+         ++ V SV   K+    + ++
Sbjct: 1   MLDFFRTHQRLMMFMLILVIL--PGLGFVGIQGFRGFFDENANVASVNGHKITRVEYDDA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q+L    Q +G   + +   +    + +LD ++    L    + + L A    V   +
Sbjct: 59  MRQQLDRGRQMLGAQFDMKSFDTPERRRMMLDGMIEQRVLADETQRLHLTASDDAVRRTL 118

Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D     D +   LA +G+   +Y +     L+   +          S 
Sbjct: 119 MSDPVISSLKNPDGSIDLDRYKQLLAMQGMTPDQYDERVRYNLAMQQLPASIEASAFTSK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L         + R V  I  +     A   P++A L  +++ +++++  P    I Y++
Sbjct: 179 TLAQHLTELAQQQREVQGIAFHPHDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFP-----------NQKEAD 284
                    ++ S+ +L+  Y+ N   + +  E+R    L+              ++ A+
Sbjct: 239 MSPATLSASMQPSDADLKKYYDDNIAHFRTEGEVRASHILIAAPKDASAADKAKAKQTAE 298

Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSDIS----LGSFSKEYIPD-VSLADSIFSLAKKGDF 338
           E    +K    +F Q+A++  +     S    LG F +  I    +  D+ F+L KK + 
Sbjct: 299 ELLAQVKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAAFAL-KKDEI 357

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           + ++   FG+ I  V+++KP+ T SF EVK  IA +++   A++
Sbjct: 358 SGIVQSDFGFHIIKVTDVKPTVTKSFDEVKDQIAKELKTQLATK 401


>gi|302344093|ref|YP_003808622.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
           baarsii DSM 2075]
 gi|301640706|gb|ADK86028.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
           baarsii DSM 2075]
          Length = 649

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 92/441 (20%), Positives = 178/441 (40%), Gaps = 37/441 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVP------- 52
           MLE++R+ +  W+ KI L ++ + F L +GLS    S  G    + V  Q +        
Sbjct: 1   MLELMRRQAGNWIIKIILGLIALAFALSFGLSPNFGSNPG--VAMKVNDQPIMEDAVSEL 58

Query: 53  FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
           +       +Q+ G    K+  ++N        L ++ L +L+    L Q  + +GL   +
Sbjct: 59  YGRMTEQARQQFGDNFDKLAPMLN--------LRQQALYSLMDRLLLAQAAQRMGLGVSN 110

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             +   I     F   + KF   ++  RLA   + E+ + +     L +  +  M  G  
Sbjct: 111 RELASSIQDMAAFQ-VEGKFDMRLYQQRLAANRLTEERFENSVRADLLQGKIAAMVGGSG 169

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
           + + L +DQA +         Y+++    +          + + +E +K  Y  P   R+
Sbjct: 170 QVTPLQVDQALQEALSRADAVYLLVKPEDLLDSVKVGEDEIAEHYESHKGLYMNPATLRV 229

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF----- 287
            Y+   V     K +++ DE+   YE +  +Y  PE      ++     EADEA      
Sbjct: 230 DYVALPVSAFRDKADVAEDEIIDAYEMDWRQYSRPEEVRARHILIELAPEADEAQKAKAK 289

Query: 288 -------QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGD 337
                  +  + G+ F ++A+E  K  S      LG F +  +  V   D +      G 
Sbjct: 290 AQALALLEKARAGEDFAKMAKEYSKGPSADKGGDLGYFQRGQM--VGPFDELVFKMTPGQ 347

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
              V+   FG+ +  + + K +  V  +E + +I  ++   +A +   +  + L + LA 
Sbjct: 348 IE-VVETEFGWHVVKLEDKKKARIVPLEEARGEIKARLAEQQAKDLAMQAAEGLFDALAA 406

Query: 398 GTSMDEISRREKIVSIDLPLV 418
           G  ++  ++  K+V    P V
Sbjct: 407 GQPLEAAAKERKLVVEQPPAV 427


>gi|167950936|ref|ZP_02538010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 331

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 135/312 (43%), Gaps = 27/312 (8%)

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK----DNKFSHDVFVSR 140
           +  ++L  ++ G+ L Q   D+GL     RV  ++ RS +   +    D  F   ++   
Sbjct: 7   MRAEVLQEMIRGSLLRQVSHDMGL-----RVGDQLIRSAILGIEAFQVDGHFDKALYERG 61

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           +  +G +E  +     + L    +       +  +   +++  R   + R   Y  L   
Sbjct: 62  VRLQGTSEAGFEQRVRQALLSEQLSQAVQNSVFATQREIEELIRLRNQTRDAAYFTLPVA 121

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
              +  +    ++  +++ +++ + APE  +I Y+L         +++  + L+  YE +
Sbjct: 122 DFLSDEEIPIDLVESYYQSHQNEFLAPEQVKIEYLLLSAEAIAPTLDVQEEALRGYYEAH 181

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAF------------QSLKKGKKFIQLAEEQ----G 304
            E Y  PE R    ++    ++ADEA             Q ++ G+ F  LA+ +    G
Sbjct: 182 LESYGRPEQRRASHILVQVAQDADEATVAAAKEKIASLRQRVEAGEAFADLAKSESQDPG 241

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            + +   LG F K  I D +   + F+L K+G+ +  +  SFG+ +  +S IK     SF
Sbjct: 242 SAAAGGDLGFFGK-GIMDPAFESATFAL-KEGELSEAVRSSFGFHLIRLSEIKSGDVKSF 299

Query: 365 QEVKKDIANQMR 376
           +E ++++ +  R
Sbjct: 300 EEARQEVESAYR 311


>gi|305433211|ref|ZP_07402367.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter coli JV20]
 gi|304443912|gb|EFM36569.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter coli JV20]
          Length = 495

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 175/408 (42%), Gaps = 41/408 (10%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           W++ I  V     FL WG  D  F+++ SS+V  VG +K+ ++ F   + Q     +Q  
Sbjct: 17  WISTIAFVG--AGFLGWGAYD--FNLNRSSSVAVVGDEKINYNEFNVRYNQIFNYYNQIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +N E A+ +G++   L +LV    L  F +D+GL +    V   +A +  F      
Sbjct: 73  NGGLNEESAKQLGIENAALSSLVEDKLLLNFAKDLGLGSSENEVIQALAETKAFQDPSGD 132

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFEN 189
           F+  ++   L    +  KE    Y K LS   ++G    +  +  ++  L      YF  
Sbjct: 133 FNKTIYYELLNANNMTPKE----YEKTLSNEIIIGKLEQIFNLPQTDEELKMLGASYFMQ 188

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS--YILFDVHEKEKKIE 247
            S++   L         +     L + + ++K++Y+  +   IS  Y+  D+     KI+
Sbjct: 189 DSLNIAKLEQDKENIKVNEEE--LKKLWNEHKEDYKTKKVYEISTYYLPVDMQ----KID 242

Query: 248 ISNDELQAEYEKNKEKY--FSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQ 303
            S  E     E NK KY  FS +I + E          D A   LK     KF++L E +
Sbjct: 243 DSKLEEFYNNENNKFKYKDFSGKIMSFE--AAKKDVAKDYALAQLKNIANAKFLELKEGK 300

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            K   D ++   S  Y P  +L     S  K GD         GY+I  ++   P  T +
Sbjct: 301 DKFQKDENITD-SDVYYPLEAL-----SRVKNGDVLRPSEYQNGYIIIKLNKTNPVRTKT 354

Query: 364 FQEVKKDIANQMRITKASEKVKEDY-----KRLEEFLALGTSMDEISR 406
           F E K+++   M I   SE+VK++      + LE F   GT++  +SR
Sbjct: 355 FDEAKEEL---MPIY-ISEQVKKNLEEKAKQNLENF--SGTNIGFVSR 396


>gi|221135500|ref|ZP_03561803.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola sp.
           HTCC2999]
          Length = 626

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 99/542 (18%), Positives = 220/542 (40%), Gaps = 43/542 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE +R+  +   A I + ++ + F+  G+   L S   ++    V  + +   +   ++
Sbjct: 1   MLERMREGLQGPWAMIIVALIVLSFVFAGVGSYLASPVDTA-AAKVNGEDISARALDQAY 59

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  + G  ++S  A         + IL+ LV+   ++Q  + +GL     ++  
Sbjct: 60  QNERARLESQFGEGISSLFANPEYLANFRQGILERLVADKLVEQKAQALGLRVSDTQIKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV-GMFVGGMRPSN 176
            I   P F      F++D +++ L + G    ++ ++    +++  +   +        N
Sbjct: 120 TILSMPEFQ-VGGVFNNDRYLAVLRQAGFQVDDFRNYMRNTMTKEQLSRALLATDFVVPN 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            ++ Q      + R V Y  +   +     + S+  +T +++   D Y   E   I Y+ 
Sbjct: 179 EVITQLN-LGRQTRDVKYATIPTANFADTIELSDLDITNYYQTNIDTYDTQEQVSIEYVE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQS 289
             V +    +  ++ +++  Y+ N   Y +   R V  ++  +       + +  E    
Sbjct: 238 LKVSDLMDGVNATDAQIEEYYQFNIANYRTEAQRRVSHILIESGDDTAAAEAKIAEVQAK 297

Query: 290 LKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           L  G+ F +LA+         E G  L  I++G        D +  +++ +L   GD + 
Sbjct: 298 LNAGEDFAELAKTYSDDTFSAENGGDLEFITIGDL------DPAFDEAVLALENVGDVSD 351

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGT 399
           ++   FG+ +  +++  P+    F +VK +IA  +++  A+E      + + E    +  
Sbjct: 352 IVATDFGFHLITLTDFTPAEVTPFVDVKDEIAEAVKLEIATEAFFVQQQTMAELAFEVPD 411

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDV----KGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           ++++++       +  PL  F+  +V        V A  +  + +      D        
Sbjct: 412 TLEDVASAVDKAIVKTPL--FSASNVPPALNNSAVLANAFSAEFIEENMNSD-------V 462

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           + L D   + ++I +  P R R LEEV   V     T K+ E   +  NQ++   S+E  
Sbjct: 463 IELNDEHVLVMRIAQYEPQRTRSLEEVKEQVVTALTTQKSQEAALAYVNQVIAASSEEQA 522

Query: 516 NF 517
           N 
Sbjct: 523 NL 524


>gi|194364618|ref|YP_002027228.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia R551-3]
 gi|194347422|gb|ACF50545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia R551-3]
          Length = 651

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 128/577 (22%), Positives = 221/577 (38%), Gaps = 85/577 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+  + L +L +PFL   + ++     G+  V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIVTVILGLLMIPFLFV-IDNSYLGGVGAQNVAKVSAPPTWWRSAPSWW 59

Query: 61  K-----QELGMISQKIGFVVNSERARSVGLDKKILD------NLVSGATLDQFI------ 103
                 Q   + +Q        ER R      +  D      N    A LDQ I      
Sbjct: 60  PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESNESKMAVLDQLIDEQVVR 119

Query: 104 ---EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
              E  G+    G V   I   P F   + KF+ + +  RLA  G N       + +++ 
Sbjct: 120 LVGEQAGVVIGDGAVREYITTIPAFLDSNGKFNENNY--RLALAGGNPPRTPTQFQELVR 177

Query: 161 RTDVVGMFVGGMRPSNLLLDQAK-----RFYFENRSVDYIVLNNRHVPAIADP-SNAVLT 214
            +    +   G++ S  +  QA+     +   E R V+   L    VPA   P ++A + 
Sbjct: 178 ESLQQSVIPSGLQNSGFVT-QAETERLLKLLGETRDVELAALP--EVPADTAPVTDAQIK 234

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           QW++ +  ++R  E   + Y+  +              L+  YE  K K+ SPE R    
Sbjct: 235 QWYDSHGKDFRQAESVSLEYVEINGGNLPAPTAADEATLRKRYEDEKAKFTSPEQRQASH 294

Query: 275 LVFPN-------------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
           ++                 K A   F +L K       ++EQG  L  +  G+  K +  
Sbjct: 295 ILLTGDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKEQGGDLGWVERGAMVKPF-- 352

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                D++F+ AK GD    +   FGY I  V+ ++     SF+EV        R T A+
Sbjct: 353 ----EDALFA-AKAGDVIGPVKTDFGYHIIKVAAVRGGEGKSFEEV--------RDTLAA 399

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVS-----IDLPLVDFAGKDVKGKEVAAIPYK 436
           E++K D +R    LA G  +D I++    ++     ++LPL       +     + I   
Sbjct: 400 EQLKADGERGFNELA-GRLVDAINKSPSDLAAAAKEVNLPLQTLG--PITRATASGIATD 456

Query: 437 EQLLFRVFGKDDPLSKDHTVALP------DGSYMWVQIKESIPAR----DRKLEEVLTDV 486
             +L   F   D L +D T + P          + +++    P +    D+  E+V+  +
Sbjct: 457 PAVLRAAF--SDVLVQDGTASDPIALGGATNHSVVIRVAAHTPEQAMPLDKAREQVIAAI 514

Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           + D +      + S KA   VL   K G   + +  +
Sbjct: 515 RADRQ-----RQASDKAADAVLAKLKAGATLQSLAAS 546


>gi|270156946|ref|ZP_06185603.1| peptidyl prolyl cis-trans isomerase D-like protein [Legionella
           longbeachae D-4968]
 gi|289164629|ref|YP_003454767.1| peptidyl-prolyl cis-trans isomerase D [Legionella longbeachae
           NSW150]
 gi|269988971|gb|EEZ95225.1| peptidyl prolyl cis-trans isomerase D-like protein [Legionella
           longbeachae D-4968]
 gi|288857802|emb|CBJ11647.1| putative peptidyl-prolyl cis-trans isomerase D [Legionella
           longbeachae NSW150]
          Length = 624

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/411 (19%), Positives = 168/411 (40%), Gaps = 26/411 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+   L S   ++  V V    +   +F  S+
Sbjct: 1   MLQKLNERIQGVVAWLVVILIGITFTLFGVDYYLQSRQTTNAKVVVNDFPLTLQAFDTSY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++   M  Q +  +  ++  +   L  ++LD +++   L Q     G      +    I 
Sbjct: 61  RRARAM--QDLSQLTAADEKK---LQNQVLDQMINNEVLVQAARKNGFNVSADQANAAIL 115

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  +D  FS   +   L      +  + +   + +        F+G    S  L D
Sbjct: 116 SIPQFQ-EDGHFSAQKYQQALNAALFTQSSFQNEVKQGMLLNQQRFAFMGS---SFALPD 171

Query: 181 QAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +  RF   Y ++R  +Y+++           S   +T ++ K+K  + APE   + Y+  
Sbjct: 172 EIDRFVSLYMQSRDYEYLIVPVSRFEKDVQISQDAITDYYNKHKREFMAPEKVSLDYVNL 231

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKKGKK 295
            +H+ + K+ +S+D+++  YE+N+  Y +P    V  ++F  P     DE  +   K   
Sbjct: 232 SMHDIKDKVNVSDDDVKRYYEENQNNYLTPARWHVAHILFAVPQGANKDELEKIQNKANS 291

Query: 296 FIQLAEEQGKS-------LSDISLGSFSKEYIPDVSLADSIFS-----LAKKGDFTPVIH 343
              L ++  K        +SD  L       +P ++   + +S     L   G  +    
Sbjct: 292 TYLLLQKDPKQFDHLVSKMSDDKLSVADNGVLPWIAAGQNEYSKLLSHLTTPGQISSPEK 351

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
              GY I  + + KP  T    EV+  I  Q+ +  A  +  +  ++L + 
Sbjct: 352 TKHGYEIFKLIDYKPVSTKPLSEVEASIKEQLVVEMAQTQYTQAMEQLSDL 402


>gi|87121304|ref|ZP_01077194.1| peptidyl-prolyl cis-trans isomerase D, putative [Marinomonas sp.
           MED121]
 gi|86163461|gb|EAQ64736.1| peptidyl-prolyl cis-trans isomerase D, putative [Marinomonas sp.
           MED121]
          Length = 611

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 107/524 (20%), Positives = 218/524 (41%), Gaps = 31/524 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+  V KI +  + V F ++G+   +   + S TV  V   ++  +  + S 
Sbjct: 1   MLQDIRDKSQGIVVKIIIGFIVVTFALFGVDALVTGFTTSDTVAEVDGVEITRTELLQSA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   +   +G  ++        L ++ LD L+  A L     D+ L     +V   + 
Sbjct: 61  EIQRRQLISMMGGQIDPALLEDTLLQRRALDELIQRAVLTNNANDLNLAVSDAQVDQYLI 120

Query: 121 RSPLFH--GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           ++  F   G+ ++  +  F+  L    +  K+ I     +L +   + +       SN +
Sbjct: 121 QAEQFQTDGQFDQTKYLNFIRTLGYTPLAFKQRIKQ--DILLQQGRIALSSSEFVLSNQV 178

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            DQ  +   + RS DYI  +     A+   S+  +  +F++   +++ PE  ++ Y++  
Sbjct: 179 -DQVLKLQNQQRSYDYIRYSLADEVALTQVSDTEIQAYFDENTQSFQNPEQVKLDYVIIS 237

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------ 292
             +   K+ +S+ EL+  Y+         E R    L+  N + +DE  ++L +      
Sbjct: 238 SVDFHDKVNVSSAELEQAYQAATSTAPKEERRASHILIEANDQRSDEEARALAQDIKSKI 297

Query: 293 --GKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
             G KF  LA++    L   + G       S   +P+    + +FS+      + V+   
Sbjct: 298 DSGTKFEALAKQYSDDLGSKAAGGDLGYVSSGMMVPE--FENVLFSMVVD-QVSGVVETE 354

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           FGY +  +  I    T S  E++ ++  ++   KA + +       E+   L  + D+++
Sbjct: 355 FGYHLIELREITNVDTPSLAEMEPELTQEILDRKAQDAL---LSAQEDITDLAYASDDLN 411

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK---DDPLSKDHTVALPDGS 462
                 ++++   D+ G+   G+E+  I    Q +   F     +D L+    + L +  
Sbjct: 412 ALATEYNVNIMHSDWFGRQ-GGQEL--ISSNAQAIAAAFSPELLEDSLNS-GLLELNEEQ 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
              V+I E  P  +  LEE   DV++     K    +  KA Q+
Sbjct: 468 VAIVRINEHKPQSNMSLEEASADVQEILLKRKATASLKQKAAQM 511


>gi|152990776|ref|YP_001356498.1| hypothetical protein NIS_1031 [Nitratiruptor sp. SB155-2]
 gi|151422637|dbj|BAF70141.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 490

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 166/387 (42%), Gaps = 34/387 (8%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           W++ I  V     F+ WG   A    S S  V  VG +K+    F   +       ++ +
Sbjct: 17  WISTIAFV--GAGFVGWG---AYKYGSASDAVAEVGNEKITLKEFQQRYANVYNYYNKML 71

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              ++ E+A+ +GLDK +L+ L+  A L+ +  D+GL      V  +IA   +F  ++  
Sbjct: 72  QGKLDQEQAKKMGLDKMVLNELIQEALLENYAHDLGLIVTDEEVAQKIASMKVF-WQNGH 130

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F   ++   L +  I  K++     K L    +    +   +P  L  D      F    
Sbjct: 131 FEKSLYNKLLQQNRIKPKDFEQSIRKELLLNKLHQALLYS-KPLQLEFDTMASALFMGDK 189

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR-APEYKRISYILFDVHEKEKKIEISN 250
           ++Y VL ++ +      +   L ++++K+K+ Y+ AP+Y  +S I   +    K  ++S 
Sbjct: 190 IEYTVLTDKDIDVTV--TRTELKKYYDKHKNEYKTAPKYD-LSIIEMPI----KHFKVSE 242

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-------KKGKKFIQLAEEQ 303
           +EL++ Y++N+ KY     +     + P  K   +    L       +  KK+IQ  + +
Sbjct: 243 EELKSYYKQNRLKY-----KDANGKILPFDKAKKQVMHDLDIKKSKKEALKKYIQFKKGK 297

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            ++   + +   +  +   + L   I   ++     P++     YVI  V+   P   + 
Sbjct: 298 LQAQKHLIVAQNNTSF--PLPLMQKIAQASQNSVLKPILVED-RYVIVKVNKKIPPLPMP 354

Query: 364 FQ----EVKKDIANQMRITKASEKVKE 386
           F+    EVKKD+  Q R     EK K+
Sbjct: 355 FEKAVTEVKKDLLQQKRYQLLLEKAKK 381


>gi|253996686|ref|YP_003048750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera
           mobilis JLW8]
 gi|253983365|gb|ACT48223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera
           mobilis JLW8]
          Length = 632

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 168/403 (41%), Gaps = 35/403 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++ WV K  L  + VPF ++G+   L     ++ +  V   ++   ++ N+ 
Sbjct: 1   MLDGIRSVAKGWVGKAILAFITVPFALFGIDSYLSQAGNNAAIAKVDGSEISVQAYANAM 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKK-----ILDNLVSGATLDQFIEDIGLEADHGRV 115
            Q L    Q  G      +A    LD       +LD L++   L++ I+    +    ++
Sbjct: 61  -QNLRSRMQAEG------KADQAQLDNPEVKAMVLDQLINEQLLEKEIQRANYKISDAQL 113

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY-IDHYTKMLSRTDVVGMFVGGMRP 174
              I   P F  KD KFS +++   L +     K++  +    +L++    G+   G   
Sbjct: 114 ATYITAMPSFQ-KDGKFSQELYDELLQQNRYTPKKFEAEIRATLLAQQAQDGIAKLGF-I 171

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           S    D+  +   + R V    L  +        S   +  +++K+KD  R PE  +I +
Sbjct: 172 STARADKTLKLLNQKRVVTVSELKTKDYLDQVKVSPEEVKAYYDKHKDKLRDPEQVKIEF 231

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQK-EADEA 286
           +L         I++ + E++  Y++N  K+   E R    ++        P QK EA   
Sbjct: 232 LLLSASSLVPGIKVDDAEVKRYYDENSAKFKGNEQRRASHILIGFGVNATPEQKQEAKNK 291

Query: 287 FQSL-----KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
            Q+L     K  K F +LA    ++ G +     LGSF +  +      ++ F + K  +
Sbjct: 292 AQALLDTIKKNPKSFEELAIKNSQDPGSATKGGDLGSFGRGAMVK-PFEEAAFKM-KVNE 349

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
            + ++   FGY I  V+ I    +  F+ +K  I   +   KA
Sbjct: 350 VSDLVESEFGYHIIKVTEITGQGS-DFESLKAQIKGDLIFQKA 391


>gi|121613493|ref|YP_001000390.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167005333|ref|ZP_02271091.1| hypothetical protein Cjejjejuni_03670 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249349|gb|EAQ72309.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
           jejuni subsp. jejuni 81-176]
          Length = 496

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 155/364 (42%), Gaps = 22/364 (6%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     FL WG  D  F+++ SS+V +VG +K+ FS F   ++Q L   +Q  
Sbjct: 17  WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +  E A  +G+    L +LV    L  F +D+G+  +   +  ++A +  F      
Sbjct: 73  NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F+  ++   L    +  K+Y       +    +  +F    +   L +  +  F  +  S
Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +  I  + +++    +     L + ++++K++Y+  +   IS     V  ++    I + 
Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWDEHKEDYKTKKIYEISTYFLSVSNEK----IDDK 244

Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307
           EL+  Y  ++NK KY     + ++     N+   D A   LK     KF+ L   +    
Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
            D ++         DV     + + AK GD       + GY+I  ++ + P    +F+E 
Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358

Query: 368 KKDI 371
           ++++
Sbjct: 359 REEV 362


>gi|295676521|ref|YP_003605045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
 gi|295436364|gb|ADG15534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
          Length = 644

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/404 (20%), Positives = 166/404 (41%), Gaps = 25/404 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +  + LV+L  P L + G+         S+ V SV   K+    + ++
Sbjct: 1   MLDFFRNHQRLMMFMLILVIL--PGLGFVGIQGFRGFFDESANVASVNGHKITRVEYDDA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q++    Q +G   + +   +    +++LD ++    L    + + L A    V   +
Sbjct: 59  MRQQIDRGRQMLGAQFDMKAFDTPERRREMLDGMIEQRVLADETQRLHLTASDDAVRRAL 118

Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D     + +   LA +G+   +Y +     L+   +          S 
Sbjct: 119 LSDPVISSLKNPDGSIDLERYKQLLAMQGMTPDQYDERMRYNLAMQQLPASIAASAFTSK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L         + R V  I  +     A   P++A L  +++ +++++  P    I Y++
Sbjct: 179 TLAQHLSELAQQQREVQGIAFHPHDYEAKIQPTDAQLQAYYDAHRNDFATPATAAIQYVV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEA-----------D 284
                    ++ S+ +L+  Y+ N   + +  E+R    L+   +  +           +
Sbjct: 239 MSPATLGASVQPSDADLKKYYDDNIAHFRTEGEVRASHILIAAPKDASTADKAKAKQKAE 298

Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSDIS----LGSFSKEYIPD-VSLADSIFSLAKKGDF 338
           E    LK    +F Q+A++  +     S    LG F +  I    +  D++F+L KK + 
Sbjct: 299 ELLAQLKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEI 357

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           + ++   FG+ I  V+ +KP+ T SF EVK  IA +++   AS+
Sbjct: 358 SGIVQTDFGFHIIKVTEVKPAVTKSFDEVKDQIAKEVKTQLASK 401


>gi|190150329|ref|YP_001968854.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307263670|ref|ZP_07545279.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915460|gb|ACE61712.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306870983|gb|EFN02718.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 625

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/395 (20%), Positives = 165/395 (41%), Gaps = 36/395 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + ++  V KI   ++ + F+I G+   L  V G +  V V   ++   +F  + 
Sbjct: 1   MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAR 58

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G      +   E A+    ++ +L+ LV    L Q+ +++ L     ++
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQ--FNQSVLNGLVDEELLRQYAKELKLGISAEQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  SP+F  +D KFS+D++   L   G++     D Y  +++   +      G+  S
Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLS----ADGYAAIVNEGMLFSQIQEGVIGS 171

Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV---LTQWFEKYKDNYRAPEYKR 231
              + +Q             + L N  +   A    A    L ++++ +K     PE   
Sbjct: 172 EFNVPEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLT 231

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           + Y+     +    +++++++++  YEKNK  Y +        +   N+ +A    + +K
Sbjct: 232 VEYVTLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVK 291

Query: 292 KGKKFIQLAE---------EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPV 341
            G  F +LA+          QG  L     G+F K +     SL D        G  + V
Sbjct: 292 NGADFAELAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQD--------GQVSAV 343

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           ++    Y I  V   K    +  ++VK  I   +R
Sbjct: 344 VNVDGAYHIIKVLERKAETVIPLEQVKDQITKTIR 378


>gi|261380152|ref|ZP_05984725.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria subflava
           NJ9703]
 gi|284796990|gb|EFC52337.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria subflava
           NJ9703]
          Length = 617

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 172/401 (42%), Gaps = 48/401 (11%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A+I L ++ + F+ +G ++   S  GS  +V VG +KV   +   + + E     Q  G 
Sbjct: 12  AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAG- 63

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             N+  +R       +  +L+  A L Q  + +G+     ++   I   P FH    KFS
Sbjct: 64  --NNAPSRDA-----VFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D+    L +  + E ++++   +     +++ +   G   S+    Q        R++ 
Sbjct: 117 QDLLKKYLDQRRMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               +     A     +A L +++E +K +Y  P+  ++ Y+  ++ +   K  +S +E+
Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALNIKDLADKQTVSAEEV 236

Query: 254 QAEYEKNKEKYFSP--EIRTVEQLVFPNQKEA---------DEAFQSLKKGK-KFIQLAE 301
           Q  Y+ +K    SP  EI  +   V PN  EA         D+    LK+    F +LA 
Sbjct: 237 QKAYD-SKSVDLSPRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKEHPDSFAELAA 295

Query: 302 EQGKSLSDI----SLGSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +  K LS      +LG  SK     + P+   A   F+L  KG+ +  +  S GY +  V
Sbjct: 296 KYSKDLSSSNKGGNLGYLSKGGGSGFGPEFDKA--AFALG-KGEVSDTVKSSLGYHVIKV 352

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS-------EKVKED 387
            N++   T   ++ K  I   +++ KA+       EK+ ED
Sbjct: 353 LNVEAEPT--LEQAKARIEAALKLKKAASAFNAAKEKLGED 391


>gi|307250251|ref|ZP_07532205.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857692|gb|EFM89794.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 625

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/395 (20%), Positives = 165/395 (41%), Gaps = 36/395 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + ++  V KI   ++ + F+I G+   L  V G +  V V   ++   +F  + 
Sbjct: 1   MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G      +   E A+    ++ +L+ LV    L Q+ +++ L     ++
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQ--FNQSVLNGLVDEELLRQYAKELKLGISAEQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  SP+F  +D KFS+D++   L   G++     D Y  +++   +      G+  S
Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLS----ADGYAAIVNEGMLFSQIQEGVIGS 171

Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV---LTQWFEKYKDNYRAPEYKR 231
              + +Q             + L N  +   A    A    L ++++ +K     PE   
Sbjct: 172 EFNVPEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLT 231

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           + Y+     +    +++++++++  YEKNK  Y +        +   N+ +A    + +K
Sbjct: 232 VEYVTLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVK 291

Query: 292 KGKKFIQLAE---------EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPV 341
            G  F +LA+          QG  L     G+F K +     SL D        G  + V
Sbjct: 292 NGADFAELAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQD--------GQVSAV 343

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           ++    Y I  V   K    +  ++VK  I   +R
Sbjct: 344 VNVDGAYHIIKVLERKAETVIPLEQVKDQITKTIR 378


>gi|319943847|ref|ZP_08018128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis
           ATCC 51599]
 gi|319743080|gb|EFV95486.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis
           ATCC 51599]
          Length = 649

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 133/575 (23%), Positives = 231/575 (40%), Gaps = 62/575 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLS--DALFSVSGSSTVVSVGRQKVPFSSFI 57
           M + +R   R  +A+  L+VL +P F+ +G+S  D +F      +V SV  + VP + F 
Sbjct: 1   MFDFVRTHQR--LAQGLLLVLIMPAFVFFGISGYDRMFG--DGDSVASVDGEPVPRAYFE 56

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA-TLDQFIEDIGLEADHGRVW 116
            +++Q++  + Q +G             D  + DN  +    L+  I    L AD  R  
Sbjct: 57  QTYRQQVQQMQQMMGD----------NYDAAVFDNQATRMEVLENLITRQALLADARRAR 106

Query: 117 -----GEIARSPLFHGKD-----NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
                GEI ++ L    D      KF  + +   LA  G+   +Y     +ML+   V  
Sbjct: 107 ITVTPGEIQKAILDQHADLRDANGKFDIEGYKRLLAANGLTPAQYEAQMGQMLAVGAVER 166

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
                      ++D         R V  +++  R       P++  L  +++ +   +  
Sbjct: 167 AVADSAMVPQTVVDGVFASQENRRVVRTLLVTPRDYEKGLAPTDEQLKAYYDAHASAFDL 226

Query: 227 PEYKRISYI-LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
           PE   ISY+ L       K +E S  EL+A Y+K++ ++   E R    ++    + AD 
Sbjct: 227 PESVDISYVALRRTDMLPKDVEPSEKELEAYYQKHRNQFNEAEERQASHILLKVPEGADA 286

Query: 286 AFQSLKKGK-------------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADS 328
           A +   K +             KF +LA    E+ G +     LG F ++ +     AD+
Sbjct: 287 AAKEKVKARAEALLAEAKAHPDKFAELAKKNSEDPGSAEQGGDLGFFERDTMVK-PFADA 345

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
            F L K G FT V+   +G+ +  V+ +K        EVK  +    R  +A+ +    Y
Sbjct: 346 AFGLDKPG-FTDVVETEYGFHVIQVTGVKGGGEKPLAEVKPQLVKMWREEEAARR----Y 400

Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP-----YKEQLLFRV 443
            +  E  AL   + E +   K  +    L     K V  K  A  P        +LL ++
Sbjct: 401 NQAAE--ALSNMVYEQAESLKPAAERFKLNIEQAKGVGRKPAANAPEGSPLANARLLEQL 458

Query: 444 FGKDDPLSKDHTVAL--PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
           +  D    K +T A+    G  +  ++    P R + L+EV   V++ W     A  ++ 
Sbjct: 459 YAPDALEEKRNTTAIEVSPGVLVSARVDAHHPQRRQTLDEVKDTVRQRW-IADEAARLAR 517

Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           +A +  L   +E    +D    L + L   N I+R
Sbjct: 518 EAGEKRLAELREAAGAKDAKAALPSGLSEENTISR 552


>gi|301060821|ref|ZP_07201635.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
 gi|300445070|gb|EFK09021.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
          Length = 635

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 169/411 (41%), Gaps = 69/411 (16%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           +L ++RK +++W+ K  + ++ + F+ + G S   F+   +  V  V  + +    +  +
Sbjct: 2   LLSLMRKHAKSWLIKALIAIIAIVFVFYFGYS---FTSDKAMKVAYVNGELINGPEYEKA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           ++  L     +   + N    +   L ++ LD+L++   + Q   ++GL      +   I
Sbjct: 59  YRDMLMSFQARYKDMWNDNLLKIFNLKQRALDSLITQRLMSQAATELGLAVTEEEIQKAI 118

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F                    IN +  +  Y  +LS   +          S LL 
Sbjct: 119 MTYPAFQ-------------------INGQFDMRRYQALLSANHMKPEDFEASITSELLD 159

Query: 180 DQAKRFYF------ENRSVDYIVLNNRHVP-------------AIADPSNAVLTQWFEKY 220
            + K+F F      +   ++Y    N  V              ++     A L ++FEK 
Sbjct: 160 QKLKQFLFAFLNITDQEILEYYTFANEKVKIGFVEFKPEDFKKSVTIEDKAKLKEYFEKN 219

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--- 277
           K++YR PE   + Y+  D  + E ++E++  E+Q+ YE N ++Y  P+      ++F   
Sbjct: 220 KESYRVPEKIAVRYLEIDPKDFEGEVEVTEKEIQSYYEYNSDRYSQPKQVKARHILFKFN 279

Query: 278 ---------PNQKEADEAFQSLKKGKKFIQLAEE--------QGKSLSDISLGSFSKEYI 320
                      +K+A++  +  +KG+ F  LA++        +G  L     G   K + 
Sbjct: 280 KDDSEEVKNTVKKKAEKVLEKARKGEDFASLAKKYSEGPTKSKGGDLGYFKTGEMEKPF- 338

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
                 ++ F+L KKG+ + ++   FGY I  V +IK +     + VK +I
Sbjct: 339 -----EEAAFAL-KKGEISDLVQTRFGYHIILVEDIKEAGIKPLENVKGEI 383


>gi|29654742|ref|NP_820434.1| hypothetical protein CBU_1451 [Coxiella burnetii RSA 493]
 gi|29542010|gb|AAO90948.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii RSA 493]
          Length = 522

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 104/515 (20%), Positives = 214/515 (41%), Gaps = 65/515 (12%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           ML+ I +  + W+A + L V+ + F++WG+   L S  G + TV  V  +K+        
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKIS------- 53

Query: 60  WKQELGMISQKIGFVVNSER------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
            + EL ++ Q++    + +R      A++  L ++ L NL+    L    E +G      
Sbjct: 54  -ENELNVVFQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPA 112

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-- 171
            +   I   P F  ++ KFS   F   L    +   +++    ++     V     G   
Sbjct: 113 EINQIITVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAF 171

Query: 172 MRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
           + P+ +     L++QA+ F        Y+++++      +  +  ++  +++K++++++A
Sbjct: 172 VLPNEIKNNYELINQARDF-------RYMIISSAPFLKESKVTPEMIADYYQKHRESFKA 224

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQ----- 280
           PE   I+Y+L       +++ +S+ E++  YE N+E K F+     ++Q +   +     
Sbjct: 225 PEKLSIAYLLLSPEMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLL 284

Query: 281 -KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE----------YIPDVSLADSI 329
            K++D+           ++ A  Q     + +L  FS+E           I   + +D +
Sbjct: 285 TKKSDQLSTITYTNPTSLEPAARQLNLKINTTL-LFSREGEKEGIAVNPKIVAAAFSDDV 343

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
                  D   +  GS   VI  V + +PS  +  + V   I +Q++   A  K      
Sbjct: 344 LQGGNNSDVIELKDGSL--VILRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAG 401

Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
            ++  +  G S++ I++   +   +   V    K +    +A+        F +     P
Sbjct: 402 EIQNEIHEGRSVESIAKANHLFWRNEKEVKRNNKSIPAAVMASA-------FSI-----P 449

Query: 450 LSKDH---TVALPDGSYMWVQIKESIPARDRKLEE 481
           L KDH   T  L +G    VQ+    PA  + + E
Sbjct: 450 LKKDHSMTTTVLNNGDSAVVQLTAIKPANFKNITE 484


>gi|170720931|ref|YP_001748619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           W619]
 gi|169758934|gb|ACA72250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           W619]
          Length = 623

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/406 (21%), Positives = 172/406 (42%), Gaps = 20/406 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V   + G      + S S     V  Q +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAASHSQDAAKVNGQTISQNELSQAA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L    L  L+    L Q  +D         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDEKLLRDAALKGLIERKLLLQGAKDAKFAFSEAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KF+ D F   + + G    ++     +ML+   ++G    G+  S+ + D
Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMGYGRLQF----REMLAEEMLIGQVRTGIAGSSFVTD 175

Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           Q    +   EN++ D+  L  +  PA    S+  +   +E++   +  P+   I Y+   
Sbjct: 176 QQVDAFARLENQTRDFASLTFKANPAAVKVSDDEVKAHYEQHAKEFMTPDQVVIDYVELK 235

Query: 239 VHEKEKKIEISNDELQAEYEKN-----KEKYFSPEIRTVEQLVFPNQKEA--DEAFQSLK 291
                 ++++++DEL+A+YEK      ++++ +  +  V   V   Q +A  +E  Q L 
Sbjct: 236 KSAFFDQVKVTDDELKAQYEKEIANLAEQRHAAHILIEVNDKVTDAQAKARIEEVEQRLA 295

Query: 292 KGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           KG+ F +LA+E     G + S   LG F+   + D    D+++ L   G  +  +   FG
Sbjct: 296 KGEDFAKLAKEFSQDPGSANSGGDLG-FAGPGVYDPVFEDALYKL-DDGQVSAPVRTQFG 353

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           Y +  +   +     SF  +K  +   ++     ++  +  K+L++
Sbjct: 354 YHLIKLLGKQAPEVPSFASLKDKLTRDLKTPLVEQRYVDASKQLQD 399


>gi|124267144|ref|YP_001021148.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Methylibium petroleiphilum PM1]
 gi|124259919|gb|ABM94913.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Methylibium petroleiphilum PM1]
          Length = 640

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/428 (20%), Positives = 175/428 (40%), Gaps = 70/428 (16%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M E +R  S T + +  LV+L  P F+ +G+        G++ V  V    +  + +  +
Sbjct: 1   MFEFVR--SHTRLLQFILVLLVFPAFVFFGVQGYTGMSEGNAVVAKVAGTSITQAEWDAA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNL-VSGATLDQFIED---------IGLE 109
            + +           V   RA+S G+D K+ D       TLD  + +         + L 
Sbjct: 59  HRNQ-----------VERLRAQSPGVDLKLFDTPEAKQRTLDALVRERVMLVAADKLHLT 107

Query: 110 ADHGRVWGEIARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV- 165
           A   R+    A  P        D   + DV    LA +G++ +++     + L+   V+ 
Sbjct: 108 ASDERLQRVFASDPQLAFLRKPDGSLNADV----LAAQGMSARQFEQQLRQDLAMRQVLQ 163

Query: 166 ---GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE--KY 220
              G  +   RP++  LD       + R V       +      + ++A +  +++  ++
Sbjct: 164 GVSGTVLAPSRPTSTALDA----LLQQREVRIARFEAQKFVTKVNVTDADIEAYYKDGRH 219

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
              +  PE   I Y++ D+   +  + +S+D+L+  Y +N+ +Y +PE R    ++   +
Sbjct: 220 AAEFETPEQASIEYLVLDLDAIKSGLTVSDDDLRKYYAENESRYVAPEERRASHILIKAE 279

Query: 281 KEADEA-------------FQSLKKGKKFIQLAEE---------QGKSLSDISLGSFSKE 318
           K A                 ++ K   KF +LA++         QG  L   + G+  K 
Sbjct: 280 KGASAEQREKARTKAATLLAEARKDPAKFAELAKKNSEDPGSAVQGGDLDFFARGAMVKP 339

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
           +       D+ F+L K G  + V+   FGY +  ++ ++     +F+ VK +I N+++  
Sbjct: 340 F------EDAAFAL-KPGQLSEVVESDFGYHVILLTAVRGGEKKAFESVKAEIENEVKQQ 392

Query: 379 KASEKVKE 386
            A  +  E
Sbjct: 393 LAQRRYAE 400


>gi|57236997|ref|YP_178798.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
           jejuni RM1221]
 gi|57165801|gb|AAW34580.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
           jejuni RM1221]
 gi|315058157|gb|ADT72486.1| Peptidyl-prolyl cis-trans isomerase ppiD [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 496

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     FL WG  D  F+++ SS+V +VG +K+ FS F   ++Q L   +Q  
Sbjct: 17  WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +  E A  +G+    L +LV    L  F +D+G+  +   +  ++A +  F      
Sbjct: 73  NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F+  ++   L    +  K+Y       +    +  +F    +   L +  +  F  +  S
Sbjct: 133 FNKTIYYELLNANNLAPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +  I  + +++    +     L + + ++K++Y+  +   IS     V  ++    I + 
Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLPVSNEK----IDDK 244

Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307
           EL+  Y  ++NK KY     + ++     N+   D A   LK     KF+ L   +    
Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
            D ++         DV     + S AK GD       + GY+I  ++ + P    +F+E 
Sbjct: 305 KDQNISE------SDVYYPIDLLSKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358

Query: 368 KKDI 371
           ++++
Sbjct: 359 REEV 362


>gi|303251064|ref|ZP_07337250.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252639|ref|ZP_07534532.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650074|gb|EFL80244.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859884|gb|EFM91904.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 625

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 168/396 (42%), Gaps = 38/396 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + ++  V KI   ++ + F+I G+   L  V G +  V V   ++   +F  + 
Sbjct: 1   MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G      +   E A+    ++ +L+ LV    L Q+ +++ L     ++
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQ--FNQSVLNGLVDEELLRQYAKELKLGISAEQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  SP+F  +D KFS+D++   L   G++     D Y  +++   +      G+  S
Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLS----ADGYAAIVNEGMLFSQIQEGVIGS 171

Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV---LTQWFEKYKDNYRAPEYKR 231
              + +Q             + L N  +   A    A    L ++++ +K     PE   
Sbjct: 172 EFNVPEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLM 231

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEADEAFQSL 290
           + Y+     +    +++++++++  YEKNK  Y +  E R+   +   N+ +A    + +
Sbjct: 232 VEYVTLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRSA-HIQLANETDAKAVAEQV 290

Query: 291 KKGKKFIQLAE---------EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTP 340
           K G  F +LA+          QG  L     G+F K +     SL D        G  + 
Sbjct: 291 KNGADFAELAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQD--------GQVSA 342

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           V++    Y I  V   K    +  ++VK  I   +R
Sbjct: 343 VVNVDGAYHIIKVLERKAETVIPLEQVKDQITKTIR 378


>gi|86153477|ref|ZP_01071681.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843203|gb|EAQ60414.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 496

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     FL WG  D  F+++ SS+V +VG +K+ FS F   ++Q L   +Q  
Sbjct: 17  WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +  E A  +G+    L +LV    L  F +D+G+  +   +  ++A +  F      
Sbjct: 73  NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F+  ++   L    +  K+Y       +    +  +F    +   L +  +  F  +  S
Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +  I  + +++    +     L + + ++K++Y+  +   IS     V  ++    I + 
Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLSVSNEK----IDDK 244

Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307
           EL+  Y  ++NK KY     + ++     N+   D A   LK     KF+ L   +    
Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
            D ++         DV     + + AK GD       + GY+I  ++ + P    +F+E 
Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358

Query: 368 KKDI 371
           ++++
Sbjct: 359 REEV 362


>gi|332701510|ref|ZP_08421598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551659|gb|EGJ48703.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 631

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 118/544 (21%), Positives = 217/544 (39%), Gaps = 71/544 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR+ +R+W  KI   ++ + F+ WG+    F     S V  V    V     +  +
Sbjct: 1   MLDPIRQNARSWGVKIVFGIIIIVFVFWGVGS--FRNQNGSVVGYVNDTPV----NVTEY 54

Query: 61  KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +Q L   ++++      +++E  + +GL +++   +V    + Q  +D G+      V  
Sbjct: 55  RQALERATEQLRSRFPDLDAEMLKQLGLRRQVFSQIVDAELVRQKAKDTGMVVSDEEVRE 114

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F      F ++++   L   G+ E  Y                   GMR + L
Sbjct: 115 IIRSTPAFQSDRGGFDYELYRRLLRANGLTEVSY-----------------EAGMR-TEL 156

Query: 178 LLDQAKR------------------FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           LLD+ ++                  F  +   V Y +       A A PS   +  ++E+
Sbjct: 157 LLDKMRQVATLPAKASEQEARDHFAFARDTAVVRYALFPLEDFTAQASPSEEEIAGYYEQ 216

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVF- 277
            K  +  P   RISY+LF   +  +  ++  +E++  YE + +K+    E+R    LV  
Sbjct: 217 NKARFTLPAQARISYLLFSAEQMARPEQVPAEEVRQYYEAHADKFQRQEEVRASHILVKV 276

Query: 278 ---PNQKEADEAFQSLKKGKK-------FIQLAEEQGKSLSDIS---LGSFSK-EYIPDV 323
                Q+E D A   ++  +K       F   A++  +  S  +   LG F +   +P  
Sbjct: 277 AKDAPQEEVDTAKAKIEDIRKKITGSLSFADAAKKFSEGPSGPAGGDLGWFGRGRMVP-- 334

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           +   + F+L K G  +  +   FG+ I  +   +    +   EV+ DI  ++    A+  
Sbjct: 335 TFEQAAFAL-KPGQVSAPVRTEFGWHIIKLEERREPGQIPLAEVESDIRAELARDTAASL 393

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           V +      E  A G S+ EI++   +V  D      +G   +    A I   ++    +
Sbjct: 394 VGDALDEATELAAAGQSLAEIAKSLHMVPRD------SGMFSESAGPAGIGLNDEAKRVI 447

Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
           F   D    D  V+  +G Y+  +   S P   + L+EV   ++   K  K  E   +KA
Sbjct: 448 FSLADGELTDTPVSSGNG-YILAEKAGSKPESVKPLDEVRVQIETLLKRDKALELSKAKA 506

Query: 504 NQLV 507
             L 
Sbjct: 507 QALA 510


>gi|86151641|ref|ZP_01069855.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841270|gb|EAQ58518.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 496

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     FL WG  D  F+++ SS+V +VG +K+ FS F   ++Q L   +Q  
Sbjct: 17  WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +  E A  +G+    L +LV    L  F +D+G+  +   +  ++A +  F      
Sbjct: 73  NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F+  ++   L    +  K+Y       +    +  +F    +   L +  +  F  +  S
Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +  I  + +++    +     L + + ++K++Y+  +   IS     V  ++    I + 
Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLSVSNEK----IDDK 244

Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307
           EL+  Y  ++NK KY     + ++     N+   D A   LK     KF+ L   +    
Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
            D ++         DV     + + AK GD       + GY+I  ++ + P    +F+E 
Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358

Query: 368 KKDI 371
           ++++
Sbjct: 359 REEV 362


>gi|161830280|ref|YP_001597297.1| hypothetical protein COXBURSA331_A1623 [Coxiella burnetii RSA 331]
 gi|161762147|gb|ABX77789.1| conserved hypothetical protein [Coxiella burnetii RSA 331]
          Length = 522

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 103/515 (20%), Positives = 214/515 (41%), Gaps = 65/515 (12%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           ML+ I +  + W+A + L V+ + F++WG+   L S  G + TV  V  +K+        
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKIS------- 53

Query: 60  WKQELGMISQKIGFVVNSER------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
            + EL ++ Q++    + +R      A++  L ++ L NL+    L    E +G      
Sbjct: 54  -ENELNVVFQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPA 112

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-- 171
            +   I   P F  ++ KFS   F   L    +   +++    ++     V     G   
Sbjct: 113 EINQIITVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAF 171

Query: 172 MRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
           + P+ +     L++QA+ F        Y+++++      +  +  ++  +++K++++++A
Sbjct: 172 VLPNEIKNNYELINQARDF-------RYMIISSAPFLKESKVTPEMIADYYQKHRESFKA 224

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQ----- 280
           PE   I+Y+L       +++ +S+ E++  YE N+E K F+     ++Q +   +     
Sbjct: 225 PEKLSIAYLLLSPEMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLL 284

Query: 281 -KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE----------YIPDVSLADSI 329
            K++D+           ++ A  Q     + +L  FS+E           I   + +D +
Sbjct: 285 TKKSDQLSTITYTNPTSLEPAARQLNLKINTTL-LFSREGEKEGIAVNPKIVAAAFSDDV 343

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
                  D   +  GS   V+  V + +PS  +  + V   I +Q++   A  K      
Sbjct: 344 LQGGNNSDVIELKDGSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAG 401

Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
            ++  +  G S++ I++   +   +   V    K +    +A+        F +     P
Sbjct: 402 EIQNEIHEGRSVESIAKANHLFWRNEKEVKRNNKSIPAAVMASA-------FSI-----P 449

Query: 450 LSKDH---TVALPDGSYMWVQIKESIPARDRKLEE 481
           L KDH   T  L +G    VQ+    PA  + + E
Sbjct: 450 LKKDHSMTTTVLNNGDSAVVQLTAIKPANFKNITE 484


>gi|148926659|ref|ZP_01810340.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845178|gb|EDK22273.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 496

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 153/364 (42%), Gaps = 22/364 (6%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     FL WG  D  F+++ SS+V +VG +K+ FS F   ++Q L   +Q  
Sbjct: 17  WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +  E A  +G+    L +LV    L  F +D+G+  +   +  ++A +  F      
Sbjct: 73  NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F+  ++   L    +  K+Y            +  +F    +   L +  +  F  +  S
Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEAITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +  I  + +++    +     L + + ++K++Y+  +   IS     V  ++    I + 
Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLPVSNEK----IDDK 244

Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307
           EL+  Y  ++NK KY     + ++     N+   D A   LK     KF+ L   +    
Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
            D ++         DV     + S AK GD       + GY+I  ++ + P    +F+E 
Sbjct: 305 KDQNISE------SDVYYPIDLLSKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358

Query: 368 KKDI 371
           ++++
Sbjct: 359 REEV 362


>gi|315124196|ref|YP_004066200.1| hypothetical protein ICDCCJ07001_630 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315017918|gb|ADT66011.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 454

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     FL WG  D  F+++ SS+V +VG +K+ FS F   ++Q L   +Q  
Sbjct: 17  WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +  E A  +G+    L +LV    L  F +D+G+  +   +  ++A +  F      
Sbjct: 73  NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F+  ++   L    +  K+Y       +    +  +F    +   L +  +  F  +  S
Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +  I  + +++    +     L + + ++K++Y+  +   IS     V  ++    I + 
Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLSVSNEK----IDDK 244

Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307
           EL+  Y  ++NK KY     + ++     N+   D A   LK     KF+ L   +    
Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
            D ++         DV     + + AK GD       + GY+I  ++ + P    +F+E 
Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358

Query: 368 KKDI 371
           ++++
Sbjct: 359 REEV 362


>gi|205355536|ref|ZP_03222307.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346770|gb|EDZ33402.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 496

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     FL WG  D  F+++ SS+V +VG +K+ FS F   ++Q L   +Q  
Sbjct: 17  WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +  E A  +G+    L +LV    L  F +D+G+  +   +  ++A +  F      
Sbjct: 73  NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F+  ++   L    +  K+Y       +    +  +F    +   L +  +  F  +  S
Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +  I  + +++    +     L + + ++K++Y+  +   IS     V  ++    I + 
Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLPVSNEK----IDDK 244

Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307
           EL+  Y  ++NK KY     + ++     N+   D A   LK     KF+ L   +    
Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
            D ++         DV     + + AK GD       + GY+I  ++ + P    +F+E 
Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358

Query: 368 KKDI 371
           ++++
Sbjct: 359 REEV 362


>gi|212703745|ref|ZP_03311873.1| hypothetical protein DESPIG_01793 [Desulfovibrio piger ATCC 29098]
 gi|212672827|gb|EEB33310.1| hypothetical protein DESPIG_01793 [Desulfovibrio piger ATCC 29098]
          Length = 650

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 79/409 (19%), Positives = 164/409 (40%), Gaps = 36/409 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           ML+ IR  ++++  K+   ++ + F+ WG+     +  GSS VV+ V  + +    F  +
Sbjct: 1   MLDYIRSNAQSFGVKVAFAIIILVFMFWGVGS--LTDGGSSNVVAKVNGEAITAQQFEQA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           + Q     + +    +  E      L +++L+ L+S   + Q    +G+      +   +
Sbjct: 59  Y-QRAAEYAMRNDPSLTREALVQQKLGRQVLNELISAQLIRQEAARVGMTVSPEEMHYVV 117

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
           ++ P F     KF  + +   +  + ++  EY       + R  V+    G    +    
Sbjct: 118 SKLPAFQDAQGKFDPEAYKRAIEAQRMSVAEYEQGLADSILRDKVMRTVAGSAWAAG--- 174

Query: 180 DQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +A+++Y    + R+V+Y+ L      A   P+   L  W+E +K    +     + Y+ 
Sbjct: 175 GEARKYYDFLTQQRAVEYLYLPAADFAASVKPTEEELGAWYEAHKAELASQPRVEVEYVA 234

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--QSLKKGK 294
                  +   +S +     YE NK+++  PE   V  ++ P  + A EA   Q+++K  
Sbjct: 235 VAPESLVRPESVSAEAALKWYEANKQRFRQPEQVKVAHILVPLAENAPEAAVKQAMEKAA 294

Query: 295 KFIQLAEE-----------------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           +    AE+                  G  L  I  G   K +       D+ ++L + G 
Sbjct: 295 RIRSEAEKGDFAAVADANNGPNAAGPGGELGWIQRGQTVKPF------EDAAWAL-QPGQ 347

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            +  +   FG  I  + + K +    F EV+ ++   +   +  EKV +
Sbjct: 348 ISEPVRSQFGLHIIKMEDRKDASVQPFAEVEAEVRATLAKQEGVEKVND 396


>gi|153951630|ref|YP_001398361.1| peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152939076|gb|ABS43817.1| peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 496

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     FL WG  D  F+++ SS+V +VG +K+ FS F   ++Q L   +Q  
Sbjct: 17  WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +  E A  +G+    L +LV    L  F +D+G+  +   +  ++A +  F      
Sbjct: 73  NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F+  ++   L    +  K+Y       ++   +  +F    +   L +  +  F  +  S
Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVTTDKLNQIFNIPSKDEELKMLASSYFMQDVLS 192

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +  I  + +++    +     L + + ++K+NY+  +   IS     V  ++    I + 
Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKENYKTKKIYEISTYFLPVSNEK----IDDK 244

Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307
           EL+  Y  ++NK KY     + ++     N+   D A   LK     KF+ L   +    
Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
            D ++         DV     + + AK G        + GY+I  ++ + P    +F+E 
Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGGVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358

Query: 368 KKDI 371
           ++++
Sbjct: 359 REEV 362


>gi|86149807|ref|ZP_01068036.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88596914|ref|ZP_01100150.1| putative peptidyl-prolyl cis-trans isomerase D homolog
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562333|ref|YP_002344112.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85839625|gb|EAQ56885.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88190603|gb|EAQ94576.1| putative peptidyl-prolyl cis-trans isomerase D homolog
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360039|emb|CAL34831.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284925950|gb|ADC28302.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315929133|gb|EFV08360.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 496

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 155/364 (42%), Gaps = 22/364 (6%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     FL WG  D  F+++ SS+V +VG +K+ FS F   ++Q L   +Q  
Sbjct: 17  WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +  E A  +G+    L +LV    L  F +D+G+  +  ++  ++A +  F      
Sbjct: 73  NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENQILQKLANTREFQDPTGD 132

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F+  ++   L    +  K+Y       +    +  +F    +   L +  +  F  +  S
Sbjct: 133 FNKTIYYELLNANNLAPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +  I  + +++    +     L + + ++K++Y+  +   IS     V  ++    I + 
Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLPVSNEK----IDDK 244

Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307
           EL+  Y  ++NK KY     + ++     N+   D A   LK     KF+ L   +    
Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
            D ++         DV     + + AK GD       + GY+I  ++ + P    +F+E 
Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358

Query: 368 KKDI 371
           ++++
Sbjct: 359 REEV 362


>gi|283956103|ref|ZP_06373590.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase D
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792423|gb|EFC31205.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase D
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 496

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     FL WG  D  F+++ SS+V +VG +K+ FS F   ++Q L   +Q  
Sbjct: 17  WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +  E A  +G+    L +LV    L  F +D+G+  +   +  ++A +  F      
Sbjct: 73  NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F+  ++   L    +  K+Y       +    +  +F    +   L +  +  F  +  S
Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +  I  + +++    +     L + + ++K++Y+  +   IS     V  ++    I + 
Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLPVSNEK----IDDK 244

Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307
           EL+  Y  ++NK KY     + ++     N+   D A   LK     KF+ L   +    
Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
            D ++         DV     + + AK GD       + GY+I  ++ + P    +F+E 
Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358

Query: 368 KKDI 371
           ++++
Sbjct: 359 REEV 362


>gi|315926808|gb|EFV06182.1| Putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 496

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     FL WG  D  F+++ SS+V +VG +K+ FS F   ++Q L   +Q  
Sbjct: 17  WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +  E A  +G+    L +LV    L  F +D+G+  +   +  ++A +  F      
Sbjct: 73  NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F+  ++   L    +  K+Y       +    +  +F    +   L +  +  F  +  S
Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVIADKLNQIFNIPSKDEELKMLASSYFMQDALS 192

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +  I  + +++    +     L + + ++K++Y+  +   IS     V  ++    I + 
Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLPVSNEK----IDDK 244

Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307
           EL+  Y  ++NK KY     + ++     N+   D A   LK     KF+ L   +    
Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
            D ++         DV     + + AK GD       + GY+I  ++ + P    +F+E 
Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358

Query: 368 KKDI 371
           ++++
Sbjct: 359 REEV 362


>gi|165919397|ref|ZP_02219463.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
 gi|165916913|gb|EDR35517.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
          Length = 522

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 103/515 (20%), Positives = 214/515 (41%), Gaps = 65/515 (12%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           ML+ I +  + W+A + L V+ + F++WG+   L S  G + TV  V  +K+        
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKIS------- 53

Query: 60  WKQELGMISQKIGFVVNSER------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
            + EL ++ Q++    + +R      A++  L ++ L NL+    L    E +G      
Sbjct: 54  -ENELNVVFQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPA 112

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-- 171
            +   I   P F  ++ KFS   F   L    +   +++    ++     V     G   
Sbjct: 113 EINQIITVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAF 171

Query: 172 MRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
           + P+ +     L++QA+ F        Y+++++      +  +  ++  +++K++++++A
Sbjct: 172 VLPNEIKNNYELINQARDF-------RYMIISSAPFLKESKVTPEMIADYYQKHRESFKA 224

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQ----- 280
           PE   I+Y+L       +++ +S+ E++  YE N+E K F+     ++Q +   +     
Sbjct: 225 PEKLSIAYLLLSPEMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLL 284

Query: 281 -KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE----------YIPDVSLADSI 329
            K++D+           ++ A  Q     + +L  FS+E           I   + +D +
Sbjct: 285 TKKSDQLSTITYTNPTSLEPAARQLNLKINTTL-LFSREGEKEGIAANPKIVAAAFSDDV 343

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
                  D   +  GS   V+  V + +PS  +  + V   I +Q++   A  K      
Sbjct: 344 LQGGNNSDVIELKDGSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAG 401

Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
            ++  +  G S++ I++   +   +   V    K +    +A+        F +     P
Sbjct: 402 EIQNEIHEGRSVESIAKANHLFWRNEKEVKRNNKSIPAAVMASA-------FSI-----P 449

Query: 450 LSKDH---TVALPDGSYMWVQIKESIPARDRKLEE 481
           L KDH   T  L +G    VQ+    PA  + + E
Sbjct: 450 LKKDHSMTTTVLNNGDSAVVQLTAIKPANFKNITE 484


>gi|229591358|ref|YP_002873477.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25]
 gi|229363224|emb|CAY50307.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25]
          Length = 624

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 84/408 (20%), Positives = 178/408 (43%), Gaps = 23/408 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFIN 58
           ML+ IR  S+ W+AK  + ++       G+ +A+F  SG+S   V  V  +++  +    
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIVALMAFTGI-EAIFQASGNSKQDVAKVNGEEITQTELSQ 59

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           +   +   + Q++G   ++       L +  L +L+    L Q   D         +   
Sbjct: 60  AVDMQRRQLMQQLGKDFDASLLDEKLLREAALKSLIDRKLLLQGAADSKFGFSEAALDQV 119

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I ++P F   D KF+ + F   + + G +  ++     +ML++  ++G    G+  S  +
Sbjct: 120 ILQTPEFQ-VDGKFNAERFDQVIRQLGYSRLQF----RQMLTQEMLIGQVRAGIAGSGFV 174

Query: 179 LDQAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            D     +   E ++ D+  +N +  PA    ++  +  +++++   +  P+   I Y+ 
Sbjct: 175 TDSEVLAFARLEKQTRDFATVNIKANPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLE 234

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD-------EAFQS 289
                   ++ + +DELQA Y+K      + + R    L+  N K  D       E  Q+
Sbjct: 235 LKKSSFFDQVAVKDDELQAAYQKETAN-LAEQRRAAHILIEVNDKVTDAQAKAKIEEIQA 293

Query: 290 -LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            L KG+KF  LA+E  +     S G    F+   + D     ++++L+K     PV   +
Sbjct: 294 RLAKGEKFEALAKEFSQDPGSASNGGDLGFAGPGVYDPDFETALYALSKDQVSAPV-RST 352

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           FG+ +  +  ++     +F  +K  +  +++  +  ++  E  K+LE+
Sbjct: 353 FGWHLIKLLGVEAPQVPTFASLKDKLTKELKTQQVEQRFVEATKQLED 400


>gi|262372262|ref|ZP_06065541.1| ppic-type ppiase domain-containing protein [Acinetobacter junii
           SH205]
 gi|262312287|gb|EEY93372.1| ppic-type ppiase domain-containing protein [Acinetobacter junii
           SH205]
          Length = 623

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 113/530 (21%), Positives = 215/530 (40%), Gaps = 53/530 (10%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVPFSSFINSW 60
           +E  R   + W+ K+ LV+   P  + G+ +  FS    + V  SV  Q +       + 
Sbjct: 1   MESFRTLIKGWLGKVLLVLFLTPLALVGI-EGYFSGGNKADVAKSVNGQDISNKELETAT 59

Query: 61  KQELGMISQKIGFVVNSERARSVGL-DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           K       Q +  V   E   ++ L  +K LD L++ + L Q  E +G+     ++   +
Sbjct: 60  K---NYKDQYLSLVKGDESLLNLSLIQEKALDALIARSLLQQQAEKLGISLSDTQLEQML 116

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGMRP 174
           A+ P F  ++ +FS  ++ + L   G+  +  I     DH  KM+S T +    V     
Sbjct: 117 AQQPSFQ-ENGQFSQKLYENYLRSVGMTNQGLIASLRQDHALKMISSTLMDYALV----- 170

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           S   L Q      E R++    +           SN  +  ++ K+K+ ++      + Y
Sbjct: 171 SKSDLQQLANLQTEQRTLHLASIKLDDYKKGITVSNQEIADYYNKHKNQFKQVANVDVDY 230

Query: 235 I-LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEADE 285
           + L      +  +  S  ELQ  Y+   +K      R V+ ++           QK A++
Sbjct: 231 VVLTPALLPQANVAPSEAELQQAYKAFVDKQQKDVKREVKHILITTDSRDAATAQKLAND 290

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD---SIFSLAKKGDFTPVI 342
            +  ++ G  F   A +  +  S  + G   + Y P V   D   ++ SL K G  +  +
Sbjct: 291 VYAKIQSGMSFADAAAQFSEDPSSKTQGGLVEAYAPGVFSTDFDNAVNSL-KNGQISKPV 349

Query: 343 HGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
              +GY I  ++   P+  + S++  K  +  +++ TK +    +    L E +    S+
Sbjct: 350 KTQYGYHI--IAANAPAIDIPSYEAEKPRLIAEVQKTKQANLFSDTVNSLNEMVVGNDSL 407

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAI-PYKEQL-----LFRVFGKDDPLSKDHT 455
           D +++  K V ++           KG  +    PY   L     LF    K+   +   +
Sbjct: 408 DAVAQEVKGVRVE---------SAKGVTLTTQNPYLSDLNVKAKLFNDDVKNGDRNASSS 458

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
           + L +G  +W+++++   A  + L +  T+VK      K  EE + KA Q
Sbjct: 459 IQLANGDVIWIKVRDYRAAGVKTLAQATTEVK-----AKVIEEKAYKAAQ 503


>gi|73541077|ref|YP_295597.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
 gi|72118490|gb|AAZ60753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
          Length = 649

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 113/556 (20%), Positives = 223/556 (40%), Gaps = 52/556 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +R  +  + LV++F  F+ +G+      +  S  V  V  + +      N  
Sbjct: 1   MLDFVRN-NRRLMLLLLLVLVFPSFVFFGVESYSRFMDSSHDVAKVDGRAITVQEVDNVV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + Q +G   +  +     L K + D L+    +   +    L   + R++  I 
Sbjct: 60  REQSERMRQMLGASYDPRQFEGPMLRKNVTDQLILQRVVANEVAREHLTVSNARLYEAIN 119

Query: 121 RSP----LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR--P 174
             P    L   +D       +V  LA +G+  +++ D   +    T  +G  + G    P
Sbjct: 120 SIPAIAQLPRKQDGSVDDKAYVQLLAAQGMTPEQF-DARMRFDLATQQLGTSIAGTAFVP 178

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            +LL D+      + R V  ++       +   P  A L  ++E ++  +  PE  ++ Y
Sbjct: 179 KSLL-DRLIAVRDQQRDVQALLFKPADYASKVQPDAAALKAYYESHQSAFSVPEQAKVEY 237

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           ++           +S +EL++ Y+ N  ++ + E R    ++    K+   A +   K K
Sbjct: 238 VVLSGDALAASQAVSPEELKSYYDSNIARFRTEEQRRASHILIAAPKDGPAAARQAAKDK 297

Query: 295 KFIQLAE----------------------EQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
               L E                      E+G  L  +  G+  K +       D++++L
Sbjct: 298 AGKLLEELRKHPDTFADVARKQSQDPGSAEKGGDLGFMGHGALVKPF------EDAMYAL 351

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            K G  + V+   +GY I  ++ IKPS T     V+ ++  ++R   A++K  ED     
Sbjct: 352 -KDGQISDVVETDYGYHIIKLTGIKPSETKPLDAVRPELEAELRKQFAAKKYAEDAD--- 407

Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI----PYKEQLLFRVFGKDD 448
              A G  + E +   K  +    L      +V  +   A+    P   + + +    DD
Sbjct: 408 ---AFGNMVYEQADSLKPAADKFKLTIQTADNVTRQPNPALGQNNPLNNEKVLKALFSDD 464

Query: 449 PL-SKDHTVALPDGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
            + +K +T A+  G    V  +I +  PA  RK EEV   V++ +   + A E++ K  +
Sbjct: 465 AIKNKRNTEAVQVGPTTLVAARIVDYRPATVRKFEEVEAKVREGY-IAQQAAELARKDGE 523

Query: 506 LVLEYSKEGKNFRDIG 521
             +E  K+  + +  G
Sbjct: 524 ARVEALKKSDSAQGFG 539


>gi|301154695|emb|CBW14158.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Haemophilus
           parainfluenzae T3T1]
          Length = 625

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 91/439 (20%), Positives = 182/439 (41%), Gaps = 35/439 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ++E +   + +++ K    +L V FLI G+S  L+     S    V  + +    F+N +
Sbjct: 2   LIEKMHGVAHSFIGKAIFALLPVSFLIGGMSGYLYG-GNESFAAKVNGETISQQDFLNRY 60

Query: 61  KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE    +Q+ G  F+  ++    V  L + ++  LV    + Q+ +++ L      +  
Sbjct: 61  NQEFEARAQQEGESFLAKTDSVEFVTALRQNLIQRLVDQELIRQYAKELKLGVSDDMIKR 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P     + KF +  +   L + G+      D Y  +L     +     G+  S  
Sbjct: 121 AIVSDPNLQS-NGKFDNARYQQLLTQNGLTS----DTYAAILRNALTLEQMQNGLADSEF 175

Query: 178 LL-----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
           ++     D A+ F F+ R      L      A    +   +  +++    +   PE  ++
Sbjct: 176 VVPAQVKDSAQTF-FQKRIARLATLPLADEVAKQKVTEEEIKAYYDANAKSLVQPEQAKV 234

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
            YI    +E  K   ++  ++   Y++NK ++ S ++  ++      +KEAD  +Q L+K
Sbjct: 235 QYIRVSANELGKLQPVTETQIAQYYQENKAQFISQKLAHIQ---LATEKEADAVYQELQK 291

Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGS 345
           G  F +LA  + KS+  +S      LG      +P  +  D+   L      TPV + G+
Sbjct: 292 GADFAELA--KAKSVDKLSGAQGGELGWVKDNELPK-NFEDAALLLNVGQYSTPVNVDGA 348

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           +     H+  ++     +  EVK+ IA+ +R   A  + +   K +    A   S D ++
Sbjct: 349 Y-----HIILVQDRKERTLDEVKEQIADSVRKNLAGSRFQAVEKAVRAKAA--ESSDSLA 401

Query: 406 RREKIVSIDLPLVDFAGKD 424
              +   + +   D+ GK+
Sbjct: 402 AVAEAAGVKVEETDYFGKN 420


>gi|157414981|ref|YP_001482237.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385945|gb|ABV52260.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747618|gb|ADN90888.1| Peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315931892|gb|EFV10847.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 496

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     FL WG  D  F+++ SS+V +VG +K+ FS F   ++Q L   +Q  
Sbjct: 17  WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +  E A  +G+    L +LV    L  F +D+G+  +   +  ++A +  F      
Sbjct: 73  NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F+  ++   L    +  K+Y       +    +  +F    +   L +  +  F  +  S
Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +  I  + +++    +     L + + ++K++Y+  +   IS     V  ++    I + 
Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLSVSNEK----IDDK 244

Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307
           EL+  Y  ++NK KY     + ++     N+   D A   LK     KF+ L   +    
Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALIQLKNVANAKFLDLKNGKDNFQ 304

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
            D ++         DV     + + AK GD       + GY+I  ++ + P    +F+E 
Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358

Query: 368 KKDI 371
           ++++
Sbjct: 359 REEV 362


>gi|149910316|ref|ZP_01898960.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Moritella sp. PE36]
 gi|149806676|gb|EDM66643.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Moritella sp. PE36]
          Length = 636

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 111/535 (20%), Positives = 211/535 (39%), Gaps = 47/535 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE  R+ S+   AKI L  + V F + G+S  L   S  S   +V    +   +  N  
Sbjct: 1   MLEKFREGSQGPGAKIILGAVIVTFALAGVSSYLGGGSNQS-AATVNGVDISTQALENQV 59

Query: 61  KQELGMISQKIG--FVVNSERAR-SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + +   +  + G  F V  E+      + ++ L+ L++   L Q   D+ L     ++ G
Sbjct: 60  RTDRSRLESQQGESFAVRWEQPEFQNQVRQQSLNTLIAQNLLQQMTNDLALSIGDEKIRG 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     F   D  F+ + ++S L + G+   ++++      ++  +    V        
Sbjct: 120 YIFAMQEFQ-TDGVFNDERYISLLRQNGMTPAQFVERLRVDFAQQQLTDALVNSEFSLPN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            + Q      + R +  +++      A    ++A +  ++E  K  ++ P+   + YIL 
Sbjct: 179 EVKQLAALQNQQRELSQLIVPANKFAADIVVTDAEVNSYYEDSKAFFQTPQQASVDYILV 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
           D+      IE+  D  +  Y ++   Y   + R V  ++          Q++A +    +
Sbjct: 239 DMKNISAGIELDADAAENYYNEHLSSYTQEDKRKVAHILVAFNDDESAAQEKAQDLLTQI 298

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEY----------IPDVSLADSIFSLAKKGDFTP 340
           + G  F +LA    K+ SD    +FS E           I D +   + F+L   GD T 
Sbjct: 299 QSGADFAELA----KTSSD---DTFSGENGGELDWLEKDIMDPAFETAAFALQNDGDVTT 351

Query: 341 -VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALG 398
            ++   FG+ I  +  ++     +F +VK  I  +++  +A     E  + L E+   + 
Sbjct: 352 ELVRSDFGFHIIKLLAVESGKVKAFTDVKTTIETRLKNEQAVSHFDELAETLAEQAFEVP 411

Query: 399 TSMDEISRRE--KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
            S+D  S      IVS +L   +     +    VAA  + +  +      +        +
Sbjct: 412 DSLDVASEETGLTIVSTELFSANAIPAPLNDPRVAATLFDQDFIAEALNSE-------II 464

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEV-------LTDVKKDWKTVKTAEEVSSKAN 504
            + D   + V+I E  P   + L EV       LT  K + K +     VS+K N
Sbjct: 465 NISDEQSIVVRINEYKPQTTKALAEVNDEIVARLTATKAEQKALSFMTSVSAKIN 519


>gi|152980145|ref|YP_001353225.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp.
           Marseille]
 gi|151280222|gb|ABR88632.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp.
           Marseille]
          Length = 638

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 83/403 (20%), Positives = 163/403 (40%), Gaps = 21/403 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + IR   R  +  + L+V+F  F ++GL         S+TV  V  Q +    +  + 
Sbjct: 1   MFDFIRTHQR-LMQFLLLLVIFPSFALFGLESYTSMGDSSTTVAKVDGQAITQPEWDAAQ 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++    Q  G   + +   +    + +LD L++   L    +   L      +   I 
Sbjct: 60  REQMERFRQMFGGQFDPKMFDTPEAKQDVLDGLIAQRVLAAEAKRNKLSVSDQTLQQTIM 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
                   D KF  + + S LA +G+    Y     + L    V           + L  
Sbjct: 120 GIAGLTTADGKFDVERYKSLLAAQGMTPAMYEASLRQDLIVQQVNAAIQSTAFAPDSLAQ 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      + R V Y+        +    ++ +L  +++K  + +  PE  +  Y++    
Sbjct: 180 RLSELGEQEREVQYLTFKAADYASQVKVTDDMLKAYYDK-SNEFSVPEQVKAEYVVLTAD 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------------FQ 288
               +I +S+ ++++ YE+N ++Y   E R    ++    K+A  A             +
Sbjct: 239 ALASQINVSDADIKSYYEQNAKQYGVDEQRRASHILIAANKDAPAAEKAAAKAKAEKLLE 298

Query: 289 SLKKGKK-FIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           +L+K  + F +LA+E          G     FSK  +      D+ F L K+G+ + ++ 
Sbjct: 299 TLRKSPQDFAKLAKENSNDPGSAERGGDLDFFSKGMMVK-PFEDAAFKL-KQGELSDLVE 356

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
             +G+ I  V+ IKP+     ++VK DIAN +R    ++K  E
Sbjct: 357 SDYGFHIIKVTAIKPATLKPLEQVKGDIANDIRKQLVTKKYAE 399


>gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isomerase D [Herbaspirillum seropedicae
           SmR1]
 gi|300074334|gb|ADJ63733.1| peptidyl-prolyl cis-trans isomerase D protein [Herbaspirillum
           seropedicae SmR1]
          Length = 639

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 108/511 (21%), Positives = 204/511 (39%), Gaps = 33/511 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFV--PFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
           M + IR   R      FL++LF+   F  +GL +    ++  + V  V  Q +    +  
Sbjct: 1   MFDFIRTHQRLMQ---FLLLLFIFPSFAFFGL-EGYSRLTDDNGVAKVAGQTITKEEWDA 56

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           + +Q+L  + Q  G   +S+   S    + ILDNL++   L   +    L      +   
Sbjct: 57  AHRQQLERMRQVYGNQFDSKIFDSPQARRAILDNLIAQRALGAEVVASKLVVPDQVLQQS 116

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I + P     D KF ++ +   LA +G+  K Y     + ++   +             +
Sbjct: 117 ILQIPGLTKADGKFDNEQYRVLLAAQGMTPKSYEAGLRREMAVQQLNAAIQTTAFAPKTV 176

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            +       + R+V  +        +    S+ +L  +++K    +  PE   I Y++ D
Sbjct: 177 AENLSALNDQERTVQMLNFKPDSYASQVKLSDEMLKDYYDKNSARFETPEQADIEYVVLD 236

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF----------- 287
                 +  +++D+++A YE+NK+ Y + E R    ++   +K+A  A            
Sbjct: 237 AAAVAAQAAVTDDDIKAYYEQNKKLYATEEQRRASHILIAVKKDASAADQAAAKSKAEGL 296

Query: 288 --QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
             Q  K   +F +LA    ++ G + +   LG F K  +      D+ FSL K+G+ +  
Sbjct: 297 VAQLRKNPGEFAKLAKANSQDPGSAENGGDLGYFGKGAMVK-PFEDAAFSL-KQGEISDP 354

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL-ALGTS 400
           +   FGY I  V+ IKP+     + VK +I ++++   A++K  E   +    +   G S
Sbjct: 355 VQSDFGYHIIEVTGIKPAAVKPLESVKAEIGSEIKKQIAAKKYSEMADQFNNLVYENGDS 414

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVA 457
           +  +S + K+       V        G     +PY           DD +   H    V 
Sbjct: 415 LKAVSDKLKLKIQTATGVTRTPNPAAG----PLPYNNAKFLTALFTDDVIKAKHNTEAVQ 470

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
               + +  ++    P   R  +EV  DV+K
Sbjct: 471 TAPNTLVAGRVTSYKPVTKRPFDEVKADVQK 501


>gi|78066690|ref|YP_369459.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
 gi|77967435|gb|ABB08815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
          Length = 644

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/368 (19%), Positives = 147/368 (39%), Gaps = 30/368 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V +V   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D     + +   L+ +G+  ++Y +   
Sbjct: 99  ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             LS   +    V        L  +      + R V  +VL      A   P++A L  +
Sbjct: 159 YSLSLQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLAAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           ++ +K ++  PE   I Y+++         + ++ +++  Y+ N   + +     V  + 
Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIF 278

Query: 277 FPNQKEADEAFQSLKKGK-------------KFIQLAEE---------QGKSLSDISLGS 314
                 A  A ++  K K             +F Q+A++         +G  L  I+ GS
Sbjct: 279 IAAPGSASAADKTAAKTKAEQLLADVKAHPDQFAQVAQKSSQDAPSAAKGGDLGFITRGS 338

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
            +     D    D+ F+L K+GD + V+    G+ I   + +KP+    F +VK  IA +
Sbjct: 339 TAGGKAFD----DAAFAL-KQGDVSGVVQSDLGFHILKATEVKPAAVKPFADVKDQIAAE 393

Query: 375 MRITKASE 382
           ++   AS+
Sbjct: 394 LKQQYASK 401


>gi|154706549|ref|YP_001423952.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway
           5J108-111]
 gi|154355835|gb|ABS77297.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway
           5J108-111]
          Length = 522

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 103/515 (20%), Positives = 214/515 (41%), Gaps = 65/515 (12%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           ML+ I +  + W+A + L V+ + F++WG+   L S  G + TV  V  +K+        
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKIS------- 53

Query: 60  WKQELGMISQKIGFVVNSER------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
            + EL ++ Q++    + +R      A++  L ++ L NL+    L    E +G      
Sbjct: 54  -ENELNVVFQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPA 112

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-- 171
            +   I   P F  ++ KFS   F   L    +   +++    ++     V     G   
Sbjct: 113 EINQIITVLPAFQ-ENGKFSPQRFQQFLYENSLMSAQFVAQLLQVFLIQQVEKGITGSAF 171

Query: 172 MRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
           + P+ +     L++QA+ F        Y+++++      +  +  ++  +++K++++++A
Sbjct: 172 VLPNEIKNNYELINQARDF-------RYMIISSAPFLKESKVTPEMIADYYQKHRESFKA 224

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQ----- 280
           PE   I+Y+L       +++ +S+ E++  YE N+E K F+     ++Q +   +     
Sbjct: 225 PEKLSIAYLLLSPEMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLL 284

Query: 281 -KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE----------YIPDVSLADSI 329
            K++D+           ++ A  Q     + +L  FS+E           I   + +D +
Sbjct: 285 TKKSDQLSTITYTNPTSLEPAARQLNLKINTTL-LFSREGEKEGIAANPKIVAAAFSDDV 343

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
                  D   +  GS   V+  V + +PS  +  + V   I +Q++   A  K      
Sbjct: 344 LQGGNNSDVIELKDGSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAG 401

Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
            ++  +  G S++ I++   +   +   V    K +    +A+        F +     P
Sbjct: 402 EIQNEIHEGRSVESIAKANHLFWRNEKEVKRNNKSIPAAVMASA-------FSI-----P 449

Query: 450 LSKDH---TVALPDGSYMWVQIKESIPARDRKLEE 481
           L KDH   T  L +G    VQ+    PA  + + E
Sbjct: 450 LKKDHSMTTTVLNNGDSAVVQLTAIKPANFKNITE 484


>gi|223040376|ref|ZP_03610651.1| WbnF [Campylobacter rectus RM3267]
 gi|222878334|gb|EEF13440.1| WbnF [Campylobacter rectus RM3267]
          Length = 487

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 165/427 (38%), Gaps = 81/427 (18%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     F+ WG  D   +VS +S+V  VG + +    F N + Q     +Q  
Sbjct: 17  WVSTIAFV--GAGFVGWGAYD--LNVSRASSVAKVGHRNISIQEFQNRYGQLHAYYNQLF 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              ++ ++A  +G++   L+ LV+ A L  F +D+GL  +   +   I     F+  + K
Sbjct: 73  DGQLSEKKASELGIENLALEELVNDALLLNFADDLGLGVNDEDIVKYIVADQNFYV-NGK 131

Query: 132 FSHDVFVSRLAREGINEKEY-------------------------IDHYTKMLSRTDVVG 166
           F  +++ + L R  I E EY                         I+  T      D + 
Sbjct: 132 FDKELYKNTLKRARITESEYEDSLKNVILLDKLRHALNLPAKEQDINMLTASFLMQDKIS 191

Query: 167 MFVGGMRPSNLLLDQ-AKRFYFENRSVDYIV-----LNNRHVPAIADPSNAV-LTQWFEK 219
           M V       + +D+ A +  +E R  DY       L+ + +P I+  +N   L +++ +
Sbjct: 192 MQVVEAATDEIKIDEDAVKKLWEERKNDYKTMTEFKLDTKFIPTISSDANTTELMEFYNE 251

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            K+ Y+  +            +K K+ E   DE+  +Y   + K                
Sbjct: 252 NKNEYKGSD------------DKIKEFEAVKDEVLKDYNLKQTK---------------- 283

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
            K A E +  +KK +K            +DIS+ +       + SL       AKKGD  
Sbjct: 284 -KVALEEYLKIKKDEK-----------QADISITTLE----DNASLPIDELKSAKKGDTL 327

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
                  GY+I  V  I     +SF E K  I    +  K  E V+   K L E    GT
Sbjct: 328 KPFEYEDGYMIVKVKEIVAPRVMSFDEAKDQILELYKEQKTQETVEAKAKELLEKGFQGT 387

Query: 400 SMDEISR 406
            +  ISR
Sbjct: 388 DIGFISR 394


>gi|110834075|ref|YP_692934.1| peptidyl-prolyl isomerase [Alcanivorax borkumensis SK2]
 gi|110647186|emb|CAL16662.1| peptidylprolyl isomerase [Alcanivorax borkumensis SK2]
          Length = 643

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 125/615 (20%), Positives = 245/615 (39%), Gaps = 66/615 (10%)

Query: 6   RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
           R+  R  V K+ L  + +PF+I G        S    V  V   K+             G
Sbjct: 5   RRFVRGPVGKVLLAAIILPFVISGFYGYFVGGSTGDVVAEVEGSKIT-----------RG 53

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLV------SGATLDQFI----EDIGLEADHGRV 115
           +++Q++  V N  R +S  ++  +LD+ V       G   +Q I    E   +     +V
Sbjct: 54  VVNQRVERVRNMLREQSPNMNPALLDSFVRPEMVLDGIVNEQLILSAAEQSNMVFSEKQV 113

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             +I + PLF   D KFS   F   L   G+N + Y+    + + +      F+      
Sbjct: 114 AADIYKVPLFQ-VDGKFSEQRFERELRARGMNPQTYVQGLRQDMLKEQFRAGFMQTDFSL 172

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L L++ +R   ++R + Y+ L+   +      S+  +  +++  +  +  PE  ++SY+
Sbjct: 173 PLELNEQRRLGEQSRDIRYVQLDIDSLRKQFTVSDEDVKAFYDDNQGEFMRPEEFKVSYV 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNK----EKYFSPEIRTVEQLVFPNQKEAD------- 284
                +   ++ ++++E++AEY+  K    E       R V  ++     + D       
Sbjct: 233 ELSADKYTDQVSVTDEEVEAEYDVRKSIMEEAGAGDARRHVSHILIELNDDRDLDQAKAR 292

Query: 285 --EAFQSLKKGKKF----IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
             EA +++  G  F     Q +++ G + S   LG  SK  +P+  +  +I  L+     
Sbjct: 293 AREAAKAIADGASFADVAAQYSDDLGSAQSGGELGVVSKGALPE-EMETAIAELSPGTVS 351

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
            PV+  +  ++I        +   S  ++   I   +   +A   + ED  +LEE L   
Sbjct: 352 APVVTDAGVHLIFVTQEDTATALPSLADLSDQIRADLTKARAESLLNEDVSKLEELLYEH 411

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL----FRVFGKD-DPLSKD 453
             +   + +  +  +    +D A  +       ++P  +Q L     R  G + D +  D
Sbjct: 412 PDLQSPAEQVGVSVVTTDWIDLAAANAP----LSLPQVQQALNSEQVRQQGHNSDLIEVD 467

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
            T       Y+ V+I E  PA    L+EV   +++  K     ++V   A ++  +  +E
Sbjct: 468 ST------HYIAVRIAEDKPAEPMPLDEVSFAIRERLKGELAMDKVQQLA-KMAEKTIEE 520

Query: 514 GKNFRDIGKNLGASLLTTNQINR------MDNENKFFGYDGISQVFSGPVEMVKCFPIEN 567
           G N   +       +     + R      M+  N  F     ++  + PV + +   + N
Sbjct: 521 GGNLESVATLFDVEIAEQEGLQRGGAEPAMEVVNGAFSAPRAAEGDASPVSITR---LGN 577

Query: 568 GLSYVVFKVTNSKVG 582
           G S V ++VT+   G
Sbjct: 578 G-SVVAYQVTSVADG 591


>gi|256556956|gb|ACU83578.1| parvulin-like peptidyl-prolyl isomerase [uncultured bacterium
           HF130_AEPn_2]
          Length = 623

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 84/407 (20%), Positives = 174/407 (42%), Gaps = 22/407 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V     G+     + + S     V  +++  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMAFTGIEAIFQATTNSQDAAKVNGEEISQNELSQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   ++       L +  L  L+    L Q   D         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDASLLDEKMLREAALKGLIERKLLLQGAADSKFSFSEAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F  +D KFS + F   + + G +  ++     +ML++  ++G    G+  S  + D
Sbjct: 121 QTPEFQ-EDGKFSAERFDQVIRQLGYSRMQF----RQMLTQEMLIGQLRAGIAGSGFVTD 175

Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           Q    +   E ++ D+  ++ +  PA    ++  +  +++++   +  P+   I Y+   
Sbjct: 176 QEVLNFARLEKQTRDFATVSVKADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELK 235

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--EA------DEAFQSL 290
                 ++ +++DELQA YEK      + + R    L+  N K  EA      DE    L
Sbjct: 236 KASFFDQVTVNDDELQALYEKETAN-LAEQRRAAHILIEVNDKVTEAQAKAKIDEVQARL 294

Query: 291 KKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            KG+ F  LA+E     G + +   LG F+   + D     +++ L +     PV   SF
Sbjct: 295 AKGESFEALAKEFSQDPGSANNGGDLG-FAGPGVYDPEFESALYGLNQDQVSAPV-RSSF 352

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           G+ +  +  ++     SF  +K  +  +++  +  ++  E  K+LE+
Sbjct: 353 GWHLIKLLGVEAPEVPSFASLKDKLTRELKTQQVEQRFVEATKQLED 399


>gi|260555138|ref|ZP_05827359.1| ppic-type ppiase domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
 gi|260411680|gb|EEX04977.1| ppic-type ppiase domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
          Length = 621

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 109/527 (20%), Positives = 209/527 (39%), Gaps = 48/527 (9%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ LV+   P  + G+       + +    +V  Q +         K
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDIS--------K 52

Query: 62  QELGMISQK-----IGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           ++L  ++Q+     +  V   E   ++  +  K LD LVS   L Q  E +G+     ++
Sbjct: 53  KDLETLTQRYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQI 112

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVG 170
              +A+ P    ++ +FS  ++ + L   G+  +  I     DH  KML+ T     F  
Sbjct: 113 EQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTST-----FAD 166

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
               S + L Q      E R++    +      A    SN   T ++ K+++ ++ P   
Sbjct: 167 YSLVSKVDLMQIANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASV 226

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            + Y++       K    ++ EL+  Y K  E       R V+ ++       D A Q L
Sbjct: 227 DVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKL 286

Query: 291 KK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFT 339
            K        G  F Q A +  +  +  + G   + Y P V   +   ++ SL K G  +
Sbjct: 287 AKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQIS 345

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
             +   +GY I   +  + +   SF+  K  +  ++   K +    +    L E +    
Sbjct: 346 QPVKTQYGYHIIE-AETQANQIPSFEAEKSRLIAEVEKNKVASVYSDTVNSLNETIVGND 404

Query: 400 SMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
           S+D + ++ K   I+ L  V  A ++       + P  +  LF    K+   +    + L
Sbjct: 405 SLDAVVQQVKGTKIESLNGVTLATQN----PYLSDPNVKIKLFNDDVKNGDRNASSNIQL 460

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
            +G  +WV++++   A  + L + + +VK      K  +E + KA Q
Sbjct: 461 ANGDTVWVKVRDYHAAGVKPLAQAMNEVK-----AKVIDEKARKAAQ 502


>gi|226941261|ref|YP_002796335.1| peptidyl-prolyl cis-trans isomerase [Laribacter hongkongensis
           HLHK9]
 gi|226716188|gb|ACO75326.1| Probable peptidyl-prolyl cis-trans isomerase [Laribacter
           hongkongensis HLHK9]
          Length = 607

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 135/647 (20%), Positives = 268/647 (41%), Gaps = 75/647 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E ++K   T V KI L  + + F+ +G+  +  + +  + +  VG +K+        +
Sbjct: 1   MFEFVQK--NTLVIKIILGAVALTFVGFGVG-SYTAATDDAYLAKVGGEKI--------Y 49

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           KQ+       I   +N + A S  + +++L++L+    L       G+      +   IA
Sbjct: 50  KQD-------IERALNGQPADS-AVRQQVLESLIRQKLLLADAGQHGMRVTDAELRRVIA 101

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   +  F    +   L  + ++ +++       L     +  FV     S   ++
Sbjct: 102 GIPAFQ-DNGHFDSKRYEEYLQSQYMSAEQFQARIRDELMVQQQLSAFVDATFVSPGAVE 160

Query: 181 QAKRFYFENRSVD-YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           +  +   E R ++ Y +   + +P +    +A + ++++  K  ++ PE  R+ Y+L  +
Sbjct: 161 RVHKLLAEQRQINQYRLTAAQFLPGV-KVDDADVQRFYDSNKARFQTPEKVRLEYVLLSL 219

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK----- 294
            E  K +++S  +++  YE++K +    E R V  ++    K A  A ++  K +     
Sbjct: 220 EELAKTVQVSEADVRKYYEEHKAELAGDEQRQVAHILIAVPKGASAADKARLKTEAEAIV 279

Query: 295 --------KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
                   +F  LA+E+    G +     LG F +  +      DS F LA KG  +  +
Sbjct: 280 KEVRSNPARFAALAQEKSADPGSAAKGGDLGWFGRGVMVK-PFEDSAFKLA-KGQVSDPV 337

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
              FGY I  V  IK   T     ++ DI  ++    A +K    Y++  E L   +   
Sbjct: 338 ETEFGYHIIKVEGIK---TPDLSTMQADIHARL----ARQKAGALYRQQLETLGDVSYQQ 390

Query: 403 EISRREKIVSIDLPL--VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVA 457
             S +    ++ LP+   ++  K   G  + A P  ++  F     DD     H    + 
Sbjct: 391 SDSLKPVSEALKLPVQQTEWIVKGQPGSGIVANPKVDEAAF----SDDVFKGKHNSEVID 446

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           L +   + V++  + PA+ + L EV   ++K+    K A E++ KA + +L   K GK  
Sbjct: 447 LGNERSVVVRVAAAEPAKLQPLAEVAPVIRKELAD-KAARELAVKAGEKLLAELKAGKT- 504

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-IENGLSYVVFKV 576
            D+  +         Q++R D  +   G D    VFS  V  +  +     G  + + ++
Sbjct: 505 PDVAWS------AAQQVSRRDPAS--LGRDVQRAVFSASVSKLPAYAGAAEGDGFTLVRI 556

Query: 577 TNSKVGPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
              ++ P       E+ + +  L Q+     + S +  L++ Y VT+
Sbjct: 557 --DRLLPAGALTGAERQQLVGMLAQLQTAADVTSYLNGLRAAYPVTL 601


>gi|32033981|ref|ZP_00134237.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208477|ref|YP_001053702.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae L20]
 gi|126097269|gb|ABN74097.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 625

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 79/395 (20%), Positives = 166/395 (42%), Gaps = 36/395 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + ++  V KI   ++ + F+I G+   L  V G +  V V   ++   +F  + 
Sbjct: 1   MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G      +   E A+    ++ +L+ LV    L Q+ +++ L     ++
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQ--FNQSVLNGLVDEELLRQYAKELKLGISAEQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  S +F  +D KFS+D++   L   G++     D Y  +++   +      G+  S
Sbjct: 117 KSEIVNSSIFQ-QDGKFSNDLYQQTLRSNGLS----ADGYAAIVNEGMLFSQIQEGVIGS 171

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA----PEYKR 231
           +  + + +    +       V    +  A    + A   +  +KY D +++    PE   
Sbjct: 172 DFNVPEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLT 231

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           + Y+     +    +++++++++  YEKNK  Y +        +   N+ +A    + +K
Sbjct: 232 VEYVTLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVK 291

Query: 292 KGKKFIQLAE---------EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPV 341
            G  F +LA+          QG  L     G+F K +     SL D        G  + V
Sbjct: 292 NGADFAELAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQD--------GQVSAV 343

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           ++    Y I  V   K    +  ++VK  I   +R
Sbjct: 344 VNVDGAYHIIKVLERKAETVIPLEQVKDQITKTIR 378


>gi|169796089|ref|YP_001713882.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter baumannii AYE]
 gi|213157178|ref|YP_002319223.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           AB0057]
 gi|215483544|ref|YP_002325763.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301347497|ref|ZP_07228238.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB056]
 gi|301511279|ref|ZP_07236516.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB058]
 gi|169149016|emb|CAM86893.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter baumannii AYE]
 gi|213056338|gb|ACJ41240.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           AB0057]
 gi|213987782|gb|ACJ58081.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii
           AB307-0294]
          Length = 621

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 109/527 (20%), Positives = 209/527 (39%), Gaps = 48/527 (9%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ LV+   P  + G+       + +    +V  Q +         K
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDIS--------K 52

Query: 62  QELGMISQK-----IGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           ++L  ++Q+     +  V   E   ++  +  K LD LVS   L Q  E +G+     ++
Sbjct: 53  KDLETLTQRYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQI 112

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVG 170
              +A+ P    ++ +FS  ++ + L   G+  +  I     DH  KML+ T     F  
Sbjct: 113 EQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTST-----FAD 166

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
               S + L Q      E R++    +      A    SN   T ++ K+++ ++ P   
Sbjct: 167 YSLVSKVDLMQIANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASV 226

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            + Y++       K    ++ EL+  Y K  E       R V+ ++       D A Q L
Sbjct: 227 DVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKL 286

Query: 291 KK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFT 339
            K        G  F Q A +  +  +  + G   + Y P V   +   ++ SL K G  +
Sbjct: 287 AKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQIS 345

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
             +   +GY I   +  + +   SF+  K  +  ++   K +    +    L E +    
Sbjct: 346 QPVKTQYGYHIIE-AETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSLNETIVGND 404

Query: 400 SMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
           S+D + ++ K   I+ L  V  A ++       + P  +  LF    K+   +    + L
Sbjct: 405 SLDAVVQQVKGTKIESLNGVTLATQN----PYLSDPNVKIKLFNDDVKNGDRNASSNIQL 460

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
            +G  +WV++++   A  + L + + +VK      K  +E + KA Q
Sbjct: 461 ANGDTVWVKVRDYHAAGVKPLAQAMNEVK-----AKVIDEKARKAAQ 502


>gi|71907562|ref|YP_285149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
 gi|71847183|gb|AAZ46679.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
          Length = 628

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 120/648 (18%), Positives = 277/648 (42%), Gaps = 48/648 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + +R   R  + ++FL ++ +PF  +G+   + S      V S+G  K+    F  + 
Sbjct: 1   MFDAVRNNKR--IVQVFLALITLPFAFFGVDSYMRSAGSGGDVASIGDIKITQQQFQQTL 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   +  ++G   +++   +    + ILD+L+     +Q +  +     H  V  +  
Sbjct: 59  REQQERLRTQLGAQFDAKMLDNPEARRAILDDLI-----NQRLLLVEASKKHMSVSNDAI 113

Query: 121 RSPLFHGK----DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
           R  +   +    D KFS + + + L  +G++   +     + L+   +          + 
Sbjct: 114 RQTIGAIEAFKVDGKFSTERYEAALRAQGMSPTGFEAQLRQDLTLQQLASAVGQSGLVAR 173

Query: 177 LLLDQAKRFYFENRSV-DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            + D+      E R V +Y      ++  +    +AV  +++++    ++ PE  +  Y+
Sbjct: 174 SVSDRLLSLQTEKREVMEYRFSLESYLDKVKLADDAV-RKFYDENGQQFQMPEQAKAEYV 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--------EADEAF 287
           +  +     ++ +S+ E++A Y+ +K+++ + E R    ++  ++K        +A+E  
Sbjct: 233 VLSMDSIGSQLSVSDAEIKAWYDGHKDRFQAAEERRASHILLASEKLGKDKAKAKAEELL 292

Query: 288 QSLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             ++K    F  LA    ++ G +     LG F +  +   S  D+ F L K G+ + V+
Sbjct: 293 AEIRKNPAAFADLAKKNSDDPGSASKGGDLGFFGRGMMVK-SFEDTAFGL-KDGEISGVV 350

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL-ALGTSM 401
              FG+ I  V+ I  +      +VK +I  +++ T +S K  E  +     +     S+
Sbjct: 351 ESDFGFHIIKVTGIHAAKEKPLADVKGEIEAELKKTGSSRKFAEAAEAFSNMVYEQSDSL 410

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALP 459
             ++ + K+    +   D+ G+  +      +   E+++  +F  D   +K +T  V + 
Sbjct: 411 KPVAEKFKLT---IKQSDWLGR--QANPANGVLGNEKIMAALFSDDSVKNKRNTEAVEIA 465

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
             + +  ++ +  P   +  + V   ++   K  K A+ ++SK  +  LE  K+G++  +
Sbjct: 466 PNTLVAARLIDYKPTALQPFDGVKAGIETMLKR-KEAQVLASKDGEARLEALKKGEDKLN 524

Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
            G     S L +  I     ++ F    G    ++G VE+        G  Y ++K++  
Sbjct: 525 WGAAKSVSRLDSRLIPPPAAQSVFRMETGKLPAYTG-VEL-------PGTGYALYKLSKV 576

Query: 580 KVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
             G       K   +  L  ++ K+ +   +A L+S+Y V V+   ++
Sbjct: 577 VAGENLDEASKKGMLQQLGNLVAKEEVQLYLAALRSRYKVEVNQAALE 624


>gi|307261487|ref|ZP_07543156.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868770|gb|EFN00578.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 625

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/395 (20%), Positives = 166/395 (42%), Gaps = 36/395 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + ++  V KI   ++ + F+I G+   L  V G +  V V   ++   +F  + 
Sbjct: 1   MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G      +   E A+    ++ +L+ LV    L Q+ +++ L     ++
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQ--FNQSVLNGLVDEELLRQYAKELKLGISAEQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  S +F  +D KFS+D++   L   G++     D Y  +++   +      G+  S
Sbjct: 117 KSEIVNSSVFQ-QDGKFSNDLYQQTLRSNGLS----ADGYAAIVNEGMLFSQIQEGVIGS 171

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA----PEYKR 231
           +  + + +    +       V    +  A    + A   +  +KY D +++    PE   
Sbjct: 172 DFNVPEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLT 231

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           + Y+     +    +++++++++  YEKNK  Y +        +   N+ +A    + +K
Sbjct: 232 VEYVTLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVK 291

Query: 292 KGKKFIQLAE---------EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPV 341
            G  F +LA+          QG  L     G+F K +     SL D        G  + V
Sbjct: 292 NGADFAELAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQD--------GQVSAV 343

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           ++    Y I  V   K    +  ++VK  I   +R
Sbjct: 344 VNVDGAYHIIKVLERKAETVIPLEQVKDQITKTIR 378


>gi|254521282|ref|ZP_05133337.1| peptidylprolyl isomerase [Stenotrophomonas sp. SKA14]
 gi|219718873|gb|EED37398.1| peptidylprolyl isomerase [Stenotrophomonas sp. SKA14]
          Length = 651

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 129/577 (22%), Positives = 224/577 (38%), Gaps = 85/577 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+  + L +L +PFL   + ++     G+  V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIVTVILGLLMIPFLFV-IDNSYLGGVGAQNVAKVSAPPTWWRSAPSWW 59

Query: 61  K-----QELGMISQKIGFVVNSERAR-----SVGLDKKILDNLVSG-ATLDQFI------ 103
                 Q   + +Q        ER R         D +  ++  +  A LDQ I      
Sbjct: 60  PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESTENKLAVLDQLIDEQVVR 119

Query: 104 ---EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
              E  G+    G V   IA  P F   + KF+ + +  RLA  G N       + +++ 
Sbjct: 120 LVGEQAGVVIGDGAVREYIATIPAFLDSNGKFNENNY--RLALAGGNPPRTPTQFQELVR 177

Query: 161 RTDVVGMFVGGMRPSNLL----LDQAKRFYFENRSVDYIVLNNRHVPAIADP-SNAVLTQ 215
            +    +   G++ S  +     ++  +   E R V+   L    VPA   P ++A + Q
Sbjct: 178 ESLQQSVIPSGLQNSGFVTQSETERLLKLLGETRDVELAALP--EVPADTAPVTDAQIKQ 235

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           W++ +  ++R  E   + Y+  +              L+  YE  K K+ SPE R    +
Sbjct: 236 WYDSHGKDFRQAESVSLEYVEINGGTLPAPAAADEATLRKRYEDEKAKFTSPEQRQAAHI 295

Query: 276 VFPN-------------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
           +                 K A   F +L K       ++ QG  L  +  G+  K +   
Sbjct: 296 LITGDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKAQGGDLGWVERGAMVKPF--- 352

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
               D++F+ AK GD    +   FGY I  V+ ++     SF+EV        R T A+E
Sbjct: 353 ---EDALFA-AKAGDVIGPVKTDFGYHIIKVAAVRGGQGKSFEEV--------RDTLAAE 400

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVS-----IDLPLVDFAGKDVKGKEVAAIPYKE 437
           ++K D +R    LA G  +D I++    ++     + LPL       +     + I    
Sbjct: 401 QLKADGERGFNELA-GRLVDAINKSPSDLAAAAKEVKLPLQTLG--PITRATASGIAADP 457

Query: 438 QLLFRVFGKDDPLSKDHT----VALPDGSYMWVQIK-------ESIPARDRKLEEVLTDV 486
            +L   F   D L +D T    +AL   S   V I+       +++P  D+  E+V+  +
Sbjct: 458 AVLRAAF--SDVLVQDGTASDPIALGGASNHSVVIRVSAHTPEQAMPL-DKAREQVIAAI 514

Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           + D +      + S KA   VL   K G   + +  +
Sbjct: 515 RADRQ-----RQASDKAADAVLAKLKGGATLQSLAAS 546


>gi|219871319|ref|YP_002475694.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis SH0165]
 gi|219691523|gb|ACL32746.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis SH0165]
          Length = 624

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 154/352 (43%), Gaps = 39/352 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + S  WV KI   ++ + F++ G+   L +   S  V  V  +++    F  + 
Sbjct: 1   MIEKMHEKSGGWVFKIIFALVSLSFVLGGIGGGLIATDNS--VAKVNGEEISQQVFSRAK 58

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            Q+  +++ ++G      + N    +     + IL+ LV    L Q+ + + ++    ++
Sbjct: 59  NQQQNILNAQLGERFWDLMDNPIYVKQ--FHESILNGLVDDELLRQYAKSLKIDVSADQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  SP F  +D KF+++++   L   G+      D Y  ++      GM    ++ +
Sbjct: 117 KSEIVNSPAFQ-QDGKFNNNLYQQALRNNGLT----ADGYAAIVYE----GMLFAQIQEA 167

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVP----AIADPSNAV------LTQWFEKYKDNYR 225
             +++ +     +   +  ++L  R V     +IA   N        +  ++E  K N+ 
Sbjct: 168 --IVNSSFTVPAQQELLAKLLLQKRQVRLATYSIAKEVNNQTASAEEMQAYYEANKANFV 225

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
            PE   + YI  +  +   KI+++N+++   Y+ NK KY +     +  +    + EA+E
Sbjct: 226 NPEKLTVEYISIEPKDLANKIQVTNEQIDTYYQTNKAKYTTKGEAKIAHIQVATEAEANE 285

Query: 286 AFQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADS 328
             Q+L KG+ F QLA+          QG  L     G F K +    ++ D+
Sbjct: 286 IVQALAKGEDFAQLAKAKSQDKLSAAQGGDLGWAKAGVFPKAFEDAANMLDA 337


>gi|322514009|ref|ZP_08067083.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC
           25976]
 gi|322120159|gb|EFX92120.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC
           25976]
          Length = 625

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 165/397 (41%), Gaps = 40/397 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + +   V KI   ++ + F+I G+   L  V  S+    V    +   +F  + 
Sbjct: 1   MIEKMHERTNGPVFKIIFALVSLSFVITGIGTGLAGVDTSA--AKVNGTAIEQQAFNAAK 58

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G      +   E A     ++ IL+ L+    L Q+ +++ L     ++
Sbjct: 59  SRQQNILNTQMGERFWDLLDTPEYAAQ--FNQSILNGLIDDELLRQYAQNLKLGISAEQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  SP F  +D KF++ ++   L   G++     D Y  +++   +      G+  S
Sbjct: 117 KSEIVHSPTFQ-QDGKFNNQLYQQALRNNGLS----ADGYAAIVNEAMLFSQIQEGIVGS 171

Query: 176 NLLLDQAK----RFYFENRSVDYIVLNNRHVPAIADPSNAV---LTQWFEKYKDNYRAPE 228
           +  +   +    +   + R V    L N  V A A    A    L  +++ +K+ +  PE
Sbjct: 172 HFSVPAEQELLAKLLLQKRQVR---LANYSVAAEAQNQTASGEELQAYYDAHKNAFVEPE 228

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
              I Y+        K ++++++++   YEKNK  Y +     +  +   N+ +A    Q
Sbjct: 229 KLAIEYVTLTPENVAKNVQVTDEQIATYYEKNKADYVTQGETHIAHIQVANEADAKALEQ 288

Query: 289 SLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
            L  G  F  LA+          QG  L    +G+F K +       D+   L + G  +
Sbjct: 289 QLAGGADFSALAKAKSTDKLSAAQGGDLGWAKVGTFPKAF------EDAANGL-QVGAVS 341

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             ++    Y I  V   K    +  ++VK +IA  +R
Sbjct: 342 QAVNVDGAYHIIKVLARKNEQAIPLEQVKDNIAKTIR 378


>gi|190573026|ref|YP_001970871.1| putative peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia K279a]
 gi|190010948|emb|CAQ44557.1| putative peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia K279a]
          Length = 651

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 126/576 (21%), Positives = 228/576 (39%), Gaps = 83/576 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+  + L +L +PFL   + ++     G+  V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIVTVILGLLMIPFLFV-IDNSYLGGVGAQNVAKVSAPPTWWRSAPSWW 59

Query: 61  K-----QELGMISQKIGFVVNSERAR-----SVGLDKKILDNLVSG-ATLDQFI------ 103
                 Q   + +Q        ER R         D +  ++  +  A LDQ I      
Sbjct: 60  PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESTENKLAVLDQLIDEQVVR 119

Query: 104 ---EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
              E  G+    G V   IA  P F   + KF+ + +  RLA  G N       + +++ 
Sbjct: 120 LVGEQAGVVIGDGAVREYIATIPAFLDSNGKFNENNY--RLALAGGNPPRTPTQFQELVR 177

Query: 161 RTDVVGMFVGGMRPSNLL----LDQAKRFYFENRSVDYIVLNNRHVPAIADP-SNAVLTQ 215
            +    +   G++ S  +     ++  +   E R V+   L    VPA   P ++A + Q
Sbjct: 178 ESLQQSVIPSGLQNSGFVTQSETERLLKLLGETRDVELAALP--EVPADTAPVTDAQIKQ 235

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           W++ +  ++R  E   + Y+  +              L+  YE  K K+ +PE R    +
Sbjct: 236 WYDSHGKDFRQAESVSLEYVEINGANLPAPTAADEATLRKRYEDEKAKFTTPEQRQASHI 295

Query: 276 VFPN-------------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
           +                 K A   F +L K       ++ QG  L  +  G+  K +   
Sbjct: 296 LITGDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKGQGGDLGWVERGAMVKPF--- 352

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
               D++F+ AK GD    +   FGY I  V+ ++     SF+EV        R T A+E
Sbjct: 353 ---EDALFA-AKAGDVIGPVKTEFGYHIIKVAAVRGGQGKSFEEV--------RDTLAAE 400

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVS-----IDLPLVDFAG-KDVKGKEVAAIPYK 436
           ++K D +R    LA G  +D I++    ++     ++LPL             +AA P  
Sbjct: 401 QLKADGERGFNELA-GRLVDAINKSPSDLAAAAKEVNLPLQTLGPITRATASGIAADPGV 459

Query: 437 EQLLFR-VFGKD----DPL----SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
            +  F  V  +D    DP+    + +H+V +   ++     ++++P  D+  E+V+  ++
Sbjct: 460 LRAAFSDVLVQDGTASDPIALGGATNHSVVIRVAAHT---PEQAMPL-DKAREQVIAAIR 515

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
            D +      + S KA   VL   K G   + +  +
Sbjct: 516 ADRQ-----RQASDKAADAVLAKLKAGATLQSLAAS 546


>gi|222056568|ref|YP_002538930.1| hypothetical protein Geob_3486 [Geobacter sp. FRC-32]
 gi|221565857|gb|ACM21829.1| conserved hypothetical protein [Geobacter sp. FRC-32]
          Length = 526

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 94/432 (21%), Positives = 174/432 (40%), Gaps = 58/432 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPF-----LIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML I+RK  ++ + KI   ++ + F     L+WG  D     +G      V   K+    
Sbjct: 1   MLGIMRKYKQSVLIKIVFCIIVLSFVGTIFLVWGRGD---ETTGGDFAAKVNGTKISMDD 57

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           ++ ++ +   +  Q  G  +  +  + +G+ K  +++L+  A + +  + +G+  +   +
Sbjct: 58  YLKNYDRMKSLYQQIYGQAMTPDLEKQLGIRKMAINSLIDNALIVKEAKRMGIAVNKDEI 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLA---------REGINEKEYIDHYTKMLSRTDVVG 166
             EIA+ P F  KD  F+ D +   L           EG  ++  +    + +     V 
Sbjct: 118 ANEIAKVPAFQ-KDGVFNFDQYTQMLKAYRMTPANFEEGQEQEMLVKKAREKVKERATV- 175

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
                   S+  L QA  F  +N  VD  +I  +   V      ++  LT + + ++  +
Sbjct: 176 --------SDQDLQQA--FNKQNDKVDLSFISFSPSDVKNEVKVTDQDLTTYLQGHEKEF 225

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-------PEIRTVEQLVF 277
           + PE   I+Y L        K  ++++E +  Y KN ++Y          E++   +   
Sbjct: 226 QTPEKVSIAYALVSPSRFSSKATVTDEEAETYYRKNIDRYQGKGGILPFAEVKDRAKADA 285

Query: 278 PNQKEADEAFQSLK-------KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS-- 328
             QK   EA++++        KG      A   G  + +  L  F+ +  P   LAD   
Sbjct: 286 IKQKGTREAYETVADTINKNLKGGDIKAAAASLGVKVDETPL--FTAKTAP-APLADEGE 342

Query: 329 ----IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
                F L K+G+    I  + G  I  V   KP+      E+K  +  ++   KA E  
Sbjct: 343 VIKRAF-LLKQGELGGPIETAKGIYIIKVMEKKPAAVPPLAEIKGQLTQKVTEEKARELA 401

Query: 385 KEDYKRLEEFLA 396
           K   K+ EE LA
Sbjct: 402 K---KKAEEALA 410


>gi|239501895|ref|ZP_04661205.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB900]
          Length = 621

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 109/527 (20%), Positives = 209/527 (39%), Gaps = 48/527 (9%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ LV+   P  + G+       + +    +V  Q +         K
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDIS--------K 52

Query: 62  QELGMISQK-----IGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           ++L  ++Q+     +  V   E   ++  +  K LD LVS   L Q  E +G+     ++
Sbjct: 53  KDLETLTQRYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQI 112

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVG 170
              +A+ P    ++ +FS  ++ + L   G+  +  I     DH  KML+ T     F  
Sbjct: 113 EQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTST-----FAD 166

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
               S + L Q      E R++    +      A    SN   T ++ K+++ ++ P   
Sbjct: 167 YSLVSKVDLMQIANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASV 226

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            + Y++       K    ++ EL+  Y K  E       R V+ ++       D A Q L
Sbjct: 227 DVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKL 286

Query: 291 KK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFT 339
            K        G  F Q A +  +  +  + G   + Y P V   +   ++ SL K G  +
Sbjct: 287 AKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQIS 345

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
             +   +GY I   +  + +   SF+  K  +  ++   K +    +    L E +    
Sbjct: 346 QPVKTQYGYHIIE-AETQANQIPSFEAEKPLLIAEVEKNKVASVYSDTVNSLNETIVGND 404

Query: 400 SMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
           S+D + ++ K   I+ L  V  A ++       + P  +  LF    K+   +    + L
Sbjct: 405 SLDAVVQQVKGTKIESLNGVTLATQN----PYLSDPNVKIKLFNDDVKNGDRNASSNIQL 460

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
            +G  +WV++++   A  + L + + +VK      K  +E + KA Q
Sbjct: 461 ANGDTVWVKVRDYHAAGVKPLAQAMNEVK-----AKVIDEKARKAAQ 502


>gi|313672156|ref|YP_004050267.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938912|gb|ADR18104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 623

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 140/638 (21%), Positives = 260/638 (40%), Gaps = 80/638 (12%)

Query: 25  FLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM-ISQKIGFVVNSER 79
           FL+WG+    +   +++     VVS    K  + +  N+++Q  G  I QK+        
Sbjct: 28  FLVWGVGGKGNQKTYALKIDDHVVSFNEYKTTYENISNTYRQLFGANIDQKM-------- 79

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                L K++++ ++S   L      + L      V  EI + P F   + +F  + ++ 
Sbjct: 80  -----LSKQVIEEIISKYLLLDEANRLKLPVTDAEVLAEIKKVPAFQV-NGQFDKNRYLE 133

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA--KRFYFENRSVD--YI 195
            L    I  + + +     L    ++    G +  S  + DQ   K +   N++V+  YI
Sbjct: 134 VLRLNQITPETFENDIRVNL----LLNKMKGVIATSVYVNDQEILKEYRMRNKAVEISYI 189

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
            ++           +  L +++ + K+ +  P   ++ Y+ F     +    IS  ELQ+
Sbjct: 190 KVSPEDFEKDVKVDDKSLEKYYLENKNEFLEPTKAKLKYVEFAPDNVKIDDNISEQELQS 249

Query: 256 EYEKNKEKYFSPE-IRTVEQLV----FPNQ-------KEADEAFQSLKKGKKFIQLAEEQ 303
            Y KNKE++   E I+    L+    F +        K+A+E ++  K G KF +LA++ 
Sbjct: 250 YYLKNKEQFKQDEQIKARHILIKIDNFQDNVSVEKALKKAEEIYKKAKSGAKFEELAKQY 309

Query: 304 GKSLSDISLG--SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
              +S  + G   F K  +      D++FSL K+G+ +  +  SFGY I       P   
Sbjct: 310 SDDISKNNGGDLGFVKRGMMIKEFEDALFSL-KEGEISKPVKTSFGYHIIKNEKYLPKKE 368

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYK-----RLEEFLALGTSMDEISRREKIVSIDLP 416
            +F EVK    +Q+R T   +K+   +K     + +E  + G     I +  K  S+++ 
Sbjct: 369 YTFAEVK----DQIRSTILKDKIMSQFKQSVQAKYKEIQSFGNLSGYIVKNPK--SLEIK 422

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT----VALPDGSYMWVQIKESI 472
             D+  + V+      IP  E +      K++ L  D T    + L +G Y   +I + I
Sbjct: 423 ETDYISEGVRD---TFIP--EDI------KNELLKLDKTELSSLYLINGKYYLFEIADKI 471

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK-NFRDIGKNLGASLLTT 531
                 LE++   V K +   + +     KA++        GK N  +  K L  +    
Sbjct: 472 TPTVPPLEKIKEKVIKSYVRKQASIIAKQKADEAA------GKSNINEAAKFLNLAPQDV 525

Query: 532 NQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQE 586
               R+D   N          +F+     +    I++G SY V  V N    S     ++
Sbjct: 526 AAFKRIDPIPNIGVNSTMTEAIFTTKAPAMVKSSIQHGSSYYVIYVKNFLPASDDKLPEQ 585

Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           ++    YL  +   +  +S I  LK    + +  NL++
Sbjct: 586 RNTIAQYLINLKQTEAYNSYIEKLKKDARIDISPNLLE 623


>gi|293605682|ref|ZP_06688060.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
 gi|292815920|gb|EFF75023.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
          Length = 684

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/392 (19%), Positives = 155/392 (39%), Gaps = 19/392 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IR + R W+  I L+++   F + G+      +     + +V  Q +  + F  + 
Sbjct: 31  MFEFIR-SHRRWMQLILLLLIVPSFFLVGIQGYDSFMRKEPELATVAGQPISRAEFDQAH 89

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L  + Q+ G   +   + +  L + +L+ L++   L     D         +   IA
Sbjct: 90  RNQLEQMRQRQGARFDPAVSDTPALREGLLNQLINQRLLANVAVDNRFNVSDETLRNTIA 149

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     + +FS + +   LA +G++   +     + L+   V+       R    ++ 
Sbjct: 150 AIPEVQ-DNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVGRVLDPVGQSARAPAEVVA 208

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +    + R+V           +    S A +  W++  K   + PE  ++ Y++ D  
Sbjct: 209 SLESALTQQRTVQLRRFAAEDYRSQVTVSPADIQAWYDANKQQLQIPEQVQVQYLVLDEA 268

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------------DEAF 287
              + I++ +++L + YE+NK ++  PE R    ++      A             D A 
Sbjct: 269 AATQGIQVKDEDLASYYEQNKNRFGQPERRRASHIMIELAPGASEEARKAARAKAEDLAK 328

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHG 344
           Q+     KF +LA +  +     S G       P +    L  +IF  AK    + V+  
Sbjct: 329 QAAADPSKFAELATKNSQDAGSASKGGDLGWLAPGMLSGPLEKAIFGQAKD-QVSGVVES 387

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             G  I  V+ I+P+      EVK  I +++R
Sbjct: 388 PAGLHIVKVTEIQPAAIKPLAEVKDQITSEVR 419


>gi|330503121|ref|YP_004379990.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
 gi|328917407|gb|AEB58238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
          Length = 615

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/404 (19%), Positives = 170/404 (42%), Gaps = 20/404 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  SR W+AKI + ++ +     G    +   S  +    V    +  +    + 
Sbjct: 1   MLQNIRDNSRGWIAKIIIGLIVMLMAFTGFEAIVTGTSNRNNAADVNGDTITLNELNQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   + Q++G   ++       L +  L  L+    L Q   D       G +   I 
Sbjct: 61  EMQRRQLLQQLGRDFDASLLDEKLLREASLKGLIERKLLLQAANDAHFAFSQGSLDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D +F    F   + + G    ++     +ML    ++G    G+  S+ + +
Sbjct: 121 QTPEFQ-VDGRFDASRFDQVIRQMGYTRLQF----RQMLEEEMLIGQLRAGLGASSFVTE 175

Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           Q  R +   E ++ D+  L  +  PA  + ++A +  +++++   + +PE   + Y+   
Sbjct: 176 QEARAFANLERQTRDFASLTIKADPAAVELNDADVKAYYDEHASEFMSPEQVVLEYVELQ 235

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-----DEAFQSLKKG 293
                 ++E+S+++L+  YE   E     E R    ++     EA     +E  + +  G
Sbjct: 236 KDSFFDQVEVSDEDLKPLYE--SEIANLAEQRQAAHILIEGDDEAARSKIEEIKKRVDAG 293

Query: 294 KKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F  LA+E     G ++    LG ++   + D +   ++++L ++G  +  +   FG+ 
Sbjct: 294 EDFAALAKEFSQDPGSAVDGGDLG-YAGPGVYDPAFEKALYAL-QQGQVSEPVKSEFGWH 351

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           +  +  ++     SF  +K  +A   +  +  +   E  K+LE+
Sbjct: 352 LIKLLGVQAPEVPSFDSLKDKLARDFKAQQVEQHFVEATKQLED 395


>gi|33152751|ref|NP_874104.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus ducreyi 35000HP]
 gi|38605184|sp|Q7VKX4|PPID_HAEDU RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
 gi|33148975|gb|AAP96493.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus ducreyi 35000HP]
          Length = 620

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 133/667 (19%), Positives = 283/667 (42%), Gaps = 91/667 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + + +   K+   ++ + F++ G+   L  V   ++ V V    +   +F  + 
Sbjct: 1   MIEKMHERTNSVAFKVIFALVSLSFVLTGIGTGL--VGADTSAVKVNGTTIDQHAFNTAK 58

Query: 61  KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G      +   E A+    ++ +LD LV+   + Q+ +D+ L     ++
Sbjct: 59  ARQQNVLNAQLGERFWDLLDTPEYAKQ--FNQSVLDGLVNDELMRQYAKDLKLGISANQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             +I  S +F  +D KF+++++   L   G+      D Y  +++   ++     G+  S
Sbjct: 117 KSQIVNSQIFQ-QDGKFNNELYQHTLRNNGLT----ADGYAAIVNEGMLLSQIQKGIVES 171

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPA--IADPSNAV--LTQWFEKYKDNYRAPEYKR 231
           +  +   +    +       V    +  A  IA+ + +V  L ++++  K +   PE   
Sbjct: 172 DFSVPVTEALLAKLLLQQRQVRLATYPIAKEIANQTASVEELQKYYDAKKTDLVEPEQLV 231

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           + Y+ F   + EK I+++++++   YEKNK  + +     +  +   N+++A +  ++LK
Sbjct: 232 VEYVTFMPKDIEKNIQVTDEQVATYYEKNKADFVTKGETHLAHIQLANEEKAKQVAEALK 291

Query: 292 KGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
           +G  F  LA          +QG  L     G F     P++    +  +LA      PV 
Sbjct: 292 QGTDFAMLANDTSTDSLSAQQGGDLGWTKAGIF-----PEI-FEQTANALAINEVSEPVK 345

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
             +  Y I  V + K    + F+ VK  I   +R     E +  +Y  +   +A   + +
Sbjct: 346 VDN-NYHIIKVLDRKEDVALPFEMVKDKIVKIIR----DELLLTEYSNISHEMA-NKAFE 399

Query: 403 EISRREKIVSIDLPLVDFAGKDVKG------KEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
             S   ++  I       AG +V+       + + A    E+++  +F  +   S  ++ 
Sbjct: 400 NSSSLAEVAQI-------AGVNVQTSTQFNREHIPADLNNEKVIKALFNGELRQSGQNSD 452

Query: 457 ALPDGS-----YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
           AL  G+      M+V++++  P R R  +E   D+++  K          KA QL+L  +
Sbjct: 453 ALDVGNEREPKTMFVRVRDFYPERVRTFDEAKADIEQIVK--------HQKAEQLLLAKA 504

Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571
           +E         N+ A L   N +N   NE +   Y   ++    P+     F ++     
Sbjct: 505 EE---------NVKA-LNEGNAVNVDFNEAETLVY---AKRADNPILFKTVFAMQKPTDK 551

Query: 572 VVFKVTNSKVGPV-------------QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
             ++VT+++ G V             +E     S L Q+    L + ++  L+S+ SV V
Sbjct: 552 PTYQVTHNQQGDVVIVSLEKVIDGKQEEFAPLASQLKQLDQTLLRNDLLKDLRSRASVDV 611

Query: 619 HDNLIQR 625
           + N I++
Sbjct: 612 NQNFIEQ 618


>gi|169633493|ref|YP_001707229.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter baumannii SDF]
 gi|169152285|emb|CAP01195.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter baumannii]
          Length = 621

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 112/535 (20%), Positives = 213/535 (39%), Gaps = 64/535 (11%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ LV+   P  + G+       + +    +V  Q +         K
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDIS--------K 52

Query: 62  QELGMISQK-----IGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           ++L  ++Q+     +  V   E   ++  +  K LD LVS   L Q  E +G+     ++
Sbjct: 53  KDLETLTQRYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQI 112

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVG 170
              +A+ P    ++ +FS  ++ + L   G+  +  I     DH  KML+ T     F  
Sbjct: 113 EQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTST-----FAD 166

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DP-------SNAVLTQWFEKYKD 222
               S + L Q      E R++        H+ +I  DP       SN   T ++ K+++
Sbjct: 167 YSLVSKVDLMQIANLQTEQRTL--------HLASIKLDPYKTGLTASNQEATDYYNKHQN 218

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
            ++ P    + Y++       K    ++ EL+  Y K  E       R V+ ++      
Sbjct: 219 EFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDAR 278

Query: 283 ADEAFQSLKK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFS 331
            D A Q L K        G  F Q A +  +  +  + G   + Y P V   +   ++ S
Sbjct: 279 DDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLS 338

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           L K G  +  +   +GY I   +  + +   SF+  K  +  ++   K +    +    L
Sbjct: 339 L-KNGQISQPVKTQYGYHIIE-AETQANQIPSFEAEKSRLIAEVEKNKVASVYSDTVNSL 396

Query: 392 EEFLALGTSMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
            E +    S+D + ++ K   I+ L  V  A ++       + P  +  LF    K+   
Sbjct: 397 NETIVGNDSLDAVVQQVKGTKIESLNGVTLATQN----PYLSDPNVKIKLFNDDVKNGDR 452

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
           +    + L +G  +WV++++   A  + L + + +VK      K  +E + KA Q
Sbjct: 453 NASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEVK-----AKVIDEKARKAAQ 502


>gi|153209250|ref|ZP_01947306.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
 gi|120575458|gb|EAX32082.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
          Length = 522

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 103/515 (20%), Positives = 214/515 (41%), Gaps = 65/515 (12%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           ML+ I +  + W+A + L V+ + F++WG+   L S  G + TV  V  +K+        
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKIS------- 53

Query: 60  WKQELGMISQKIGFVVNSER------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
            + EL ++ Q++    + +R      A++  L ++ L NL+    L    E +G      
Sbjct: 54  -ENELNVVFQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPA 112

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-- 171
            +   I   P F  ++ KFS   F   L    +   +++    ++     V     G   
Sbjct: 113 EINQIITVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAF 171

Query: 172 MRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
           + P+ +     L++QA+ F        Y+++++      +  +  ++  +++K++++++A
Sbjct: 172 VLPNEIKNNYELINQARDF-------RYMIISSAPFLKESKVTPEMIADYYQKHRESFKA 224

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQ----- 280
           PE   I+Y+L       +++ +S+ E++  YE N+E K F+     ++Q +   +     
Sbjct: 225 PEKLSIAYLLLSPEMILQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLL 284

Query: 281 -KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE----------YIPDVSLADSI 329
            K++D+           ++ A  Q     + +L  FS+E           I   + +D +
Sbjct: 285 TKKSDQLSTITYTNPTSLEPAARQLNLKINTTL-LFSREGEKEGIAANPKIVAAAFSDDV 343

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
                  D   +  GS   V+  V + +PS  +  + V   I +Q++   A  K      
Sbjct: 344 LQGGNNSDVIELKDGSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAG 401

Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
            ++  +  G S++ I++   +   +   V    K +    +A+        F +     P
Sbjct: 402 EIQNEIHEGRSVESIAKANHLFWRNEKEVKRNNKSIPAAVMASA-------FSI-----P 449

Query: 450 LSKDH---TVALPDGSYMWVQIKESIPARDRKLEE 481
           L KDH   T  L +G    VQ+    PA  + + E
Sbjct: 450 LKKDHSMTTTVLNNGDSDVVQLTAIKPANFKNITE 484


>gi|184157984|ref|YP_001846323.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ACICU]
 gi|332874443|ref|ZP_08442346.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059]
 gi|183209578|gb|ACC56976.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter baumannii ACICU]
 gi|323517928|gb|ADX92309.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter baumannii TCDC-AB0715]
 gi|332737287|gb|EGJ68211.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059]
          Length = 621

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 108/527 (20%), Positives = 210/527 (39%), Gaps = 48/527 (9%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ LV+   P  + G+       + +    +V  Q +         K
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDIS--------K 52

Query: 62  QELGMISQK-----IGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           ++L  ++Q+     +  V   E   ++  +  K LD LVS   L Q  E +G+   + ++
Sbjct: 53  KDLETLTQRYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSNAQI 112

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVG 170
              +A+ P    ++ +FS  ++ + L   G+  +  I     DH  KML+ T     F  
Sbjct: 113 EQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTST-----FAD 166

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
               S + L Q      E R++    +      A    S+   T ++ K+++ ++ P   
Sbjct: 167 YSLVSKVDLMQIANLQTEQRTLHLASIKLDPYKAGLTASDQEATDYYNKHQNEFKQPASV 226

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            + Y++       K    ++ EL+  Y K  E       R V+ ++       D A Q L
Sbjct: 227 DVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKL 286

Query: 291 KK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFT 339
            K        G  F Q A +  +  +  + G   + Y P V   +   ++ SL K G  +
Sbjct: 287 AKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQIS 345

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
             +   +GY I   +  + +   SF+  K  +  ++   K +    +    L E +    
Sbjct: 346 QPVKTQYGYHIIE-AETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSLNETIVGND 404

Query: 400 SMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
           S+D + ++ K   I+ L  V  A ++       + P  +  LF    K+   +    + L
Sbjct: 405 SLDAVVQQVKGTKIESLNGVTLATQN----PYLSDPNVKIKLFNDDVKNGDRNASSNIQL 460

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
            +G  +WV++++   A  + L + + +VK      K  +E + KA Q
Sbjct: 461 ANGDTVWVKVRDYHAAGVKPLAQAMNEVK-----AKVIDEKARKAAQ 502


>gi|260550156|ref|ZP_05824370.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624]
 gi|260406911|gb|EEX00390.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624]
          Length = 621

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 105/527 (19%), Positives = 209/527 (39%), Gaps = 48/527 (9%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ L++   P  + G++      + +    +V  Q +         K
Sbjct: 1   MESFRTVIKGWLGKVLLILFLTPLALVGINGYFNRGNKADVAKTVNGQDIS--------K 52

Query: 62  QELGMISQK-----IGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           ++L  ++Q+     +  V   E   ++  +  K LD LVS   L Q  E +G+     ++
Sbjct: 53  KDLETLTQRYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQI 112

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVG 170
              +A+ P    ++ +FS  ++ + L   G+  +  I     DH  KML+ T     F  
Sbjct: 113 EQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSQALIASLRQDHALKMLTST-----FSD 166

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
               S + + Q      E R++    +           SN   T ++ K+++ ++ P   
Sbjct: 167 YALVSKVDVMQIANLQTEQRTLHLASIKLDTYKTGLTASNQEATDYYNKHQNEFKQPASV 226

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKE 282
            + Y++       K    ++ EL+  Y K  E       R V+ ++           QK 
Sbjct: 227 DVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKNAKRVVKHILITTDARDDAAAQKL 286

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV--SLADSIFSLAKKGDFTP 340
           A+E +  ++ G  F Q A +  +  +  + G   + Y P V     D   S  K G  + 
Sbjct: 287 ANEVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVSSLKNGQVSQ 346

Query: 341 VIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
            +   +GY I       P+  + SF+  K  +  ++   K +    +    L E +    
Sbjct: 347 PVKTQYGYHIIEAET--PANQIPSFEAEKARLTAEVEKNKVATVYSDTVNSLNETIVGND 404

Query: 400 SMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
           S+D + ++ K   I+ L  V  A ++ +  +    P  +  LF    K+   +    + L
Sbjct: 405 SLDAVVQQVKGTKIESLNGVTLATQNPQLSD----PNVKIKLFNDDVKNGDRNASSNIQL 460

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
            +G  +WV++++   A  + L + + + K      K  +E + KA Q
Sbjct: 461 ANGDTVWVKVRDYHAAGVKPLAQAMNEAK-----AKVIDEKARKAAQ 502


>gi|332851740|ref|ZP_08433665.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150]
 gi|332865885|ref|ZP_08436665.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113]
 gi|332729747|gb|EGJ61082.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150]
 gi|332734935|gb|EGJ66021.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113]
          Length = 621

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 112/535 (20%), Positives = 213/535 (39%), Gaps = 64/535 (11%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ LV+   P  + G+       + +    +V  Q +         K
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDIS--------K 52

Query: 62  QELGMISQK-----IGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           ++L  ++Q+     +  V   E   ++  +  K LD LVS   L Q  E +G+     ++
Sbjct: 53  KDLETLTQRYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQI 112

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVG 170
              +A+ P    ++ +FS  ++ + L   G+  +  I     DH  KML+ T     F  
Sbjct: 113 EQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTST-----FAD 166

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DP-------SNAVLTQWFEKYKD 222
               S + L Q      E R++        H+ +I  DP       SN   T ++ K+++
Sbjct: 167 YSLVSKVDLMQIANLQTEQRTL--------HLASIKLDPYKTGLTASNQEATDYYNKHQN 218

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
            ++ P    + Y++       K    ++ EL+  Y K  E       R V+ ++      
Sbjct: 219 EFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDAR 278

Query: 283 ADEAFQSLKK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFS 331
            D A Q L K        G  F Q A +  +  +  + G   + Y P V   +   ++ S
Sbjct: 279 DDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLS 338

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           L K G  +  +   +GY I   +  + +   SF+  K  +  ++   K +    +    L
Sbjct: 339 L-KNGQISQPVKTQYGYHIIE-AETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSL 396

Query: 392 EEFLALGTSMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
            E +    S+D + ++ K   I+ L  V  A ++       + P  +  LF    K+   
Sbjct: 397 NETIVGNDSLDAVVQQVKGTKIESLNGVTLATQN----PYLSDPNVKIKLFNDDVKNGDR 452

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
           +    + L +G  +WV++++   A  + L + + +VK      K  +E + KA Q
Sbjct: 453 NASSNIQLANGDTVWVKVRDYHAAGVKPLTQAMNEVK-----AKVIDEKARKAAQ 502


>gi|289811437|ref|ZP_06542066.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 408

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 185/426 (43%), Gaps = 35/426 (8%)

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++++ K  +  PE  R+SYI  D    +  +  S+ ++QA Y+++ +++  PE      +
Sbjct: 2   YYDQNKVRFMTPEQFRVSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSII 59

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIF 330
               + +A     +L KG+ F  LA+E+   +     G           +P++  A    
Sbjct: 60  QTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA---- 115

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            L +KG  + VI  S G+++A + +I+P+      EV+ DIA +++     EK  + Y  
Sbjct: 116 GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYA 171

Query: 391 LEEFLALGTSMD--EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKD 447
           L++ ++   S D   ++  E++  +      +  +D   +E+   P  + +    + G++
Sbjct: 172 LQQKVSDAASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGEN 231

Query: 448 DPLSKDHTVALPDGSYMW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                +  +   DG   + V++ E  P   + L EV   V    K  K  ++    A +L
Sbjct: 232 GTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKL 291

Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCF 563
           ++E  K GK    + K  G S      ++R          D +SQ     S P +    +
Sbjct: 292 LVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVY 342

Query: 564 PIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
            + N +  + V+      K G  P  +K   +  +TQ   + + +++++ L+ +  + + 
Sbjct: 343 GVANDMQGNVVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIG 402

Query: 620 DNLIQR 625
           D L Q+
Sbjct: 403 DALEQQ 408


>gi|95930881|ref|ZP_01313612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133123|gb|EAT14791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 664

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 116/576 (20%), Positives = 230/576 (39%), Gaps = 75/576 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPF-----LIWGLS-DALFSVSGSSTVVSVGRQKVPFS 54
           ML++IRK  +T V K+   V+   F     L+WG   D    ++       V    + F 
Sbjct: 19  MLDLIRKKQKTTVVKVVFWVIIATFIGTIFLVWGKGRDQQRDIT---VAAQVNGTDISFE 75

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            F  ++     +     G     E  + + L ++ ++ L+  A L +  E + +      
Sbjct: 76  QFRTTYSNMYNLYHNLYGQNFTPELEKQLQLTRQSINLLIDQALLLEEAERMHVSISDDE 135

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   IA  P F   D  F+ + ++S L+ + +      + + +M  +  +V +    +R 
Sbjct: 136 LVKAIAEVPAFQ-VDGVFNKEQYISVLSYQRMTP----ELFEQMQKQQMLVNLTQAQIRS 190

Query: 175 SNLLLDQ----AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
             ++ D+      R   EN ++ Y+           D ++  LT ++E  ++ +R  +  
Sbjct: 191 EAVVTDEDVADEYRRLNENVNLSYVAFKTGAFTDAVDVTDDALTAYYEANQEAFRVAQQV 250

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--- 287
            +S +     +   ++ +   ++Q  Y+++   Y  PE      ++ P  ++AD+A    
Sbjct: 251 NLSLVTLSPADYLDQVVLEEGDIQRYYDRHLATYAIPEQMAAAHILIPVAQDADDAQREK 310

Query: 288 ------QSLKKGKK--FIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKK 335
                 Q L+K +   F +LA++     +       LG F +  + D +   + F+L +K
Sbjct: 311 QRVLAEQVLEKAQTGDFAKLAKQYSADTATAQKGGDLGLFQRG-VMDPAFEAAAFAL-QK 368

Query: 336 GDFTPVIHGSFGY-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
              +P++   FGY +I    +I+  FT    +V+ ++   +R+ +A +            
Sbjct: 369 DALSPIVETRFGYHIIKGGEHIEAGFT-PLADVRDEVEKALRLDEARK------------ 415

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKG---KEVAAIP---YKEQLLFRVFGKD- 447
           LA   +MD  +   K  +            V+     ++ AIP      +L  R FG   
Sbjct: 416 LAYEKAMDAYNLNRKESNFSAAAESLGATPVETGLFSQMQAIPTVGVSSELTERAFGAAA 475

Query: 448 ----DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK---TVKTAEEVS 500
                P++    V L         + E+I +   +L  V  +V + +K    V  AEE +
Sbjct: 476 GEMLAPVNTTRGVVL-------ATVTENIASHIPELSAVKAEVTEAYKRQQAVVLAEEAA 528

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
            KA    LE  ++G   + I  N G  +  T   NR
Sbjct: 529 QKA----LEKIQQGAKLKSIADN-GRKVQETGLFNR 559


>gi|170733279|ref|YP_001765226.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
 gi|169816521|gb|ACA91104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
          Length = 645

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 74/369 (20%), Positives = 146/369 (39%), Gaps = 32/369 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V +V   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D     + +   L+ +G+  ++Y +   
Sbjct: 99  ADETQHLHLTASDNAVRDALMSDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             LS   +    V        L  +      + R V  +VL      A   P++A LT +
Sbjct: 159 YSLSLQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271
           ++ +K ++  PE   I Y+++         + +  +++  Y+ N   + +  ++R     
Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIF 278

Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                              EQL+   +   D+  Q  +K  +    A + G  L  I+ G
Sbjct: 279 IAAPGSASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKSSQDAPSAAK-GGDLGFITRG 337

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S +     D    D+ FSL K+GD + ++    G+ I   + +KP+    F EVK  IA 
Sbjct: 338 STAGGKAFD----DAAFSL-KQGDVSGIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAV 392

Query: 374 QMRITKASE 382
            ++   AS+
Sbjct: 393 DLKQQYASK 401


>gi|212212179|ref|YP_002303115.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212]
 gi|212010589|gb|ACJ17970.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212]
          Length = 522

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 126/276 (45%), Gaps = 30/276 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           ML+ I +  + W+A + L V+ + F++WG+   L S  G + TV  V  +K+        
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKIS------- 53

Query: 60  WKQELGMISQKIGFVVNSER------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
            + EL ++ Q++    + +R      A++  L ++ L NL+    L    E +G      
Sbjct: 54  -ENELNVVFQRLQRAYSLQRGQTLVSAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPA 112

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-- 171
            +   I   P F  ++ KFS   F   L    +   +++    ++     V     G   
Sbjct: 113 EINQIITVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAF 171

Query: 172 MRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
           + P+ +     L++QA+ F        Y++++       +  +  ++  +++K++++++A
Sbjct: 172 VLPNEIKNNYELINQARDF-------RYMIISRAPFLKESKVTPEMIADYYQKHRESFKA 224

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
           PE   I+Y+L       +++ +S+ E++  YE N+E
Sbjct: 225 PEKLSIAYLLLSPEMIRQQVSVSDHEIKQYYESNRE 260


>gi|311106582|ref|YP_003979435.1| peptidyl-prolyl cis-trans isomerase [Achromobacter xylosoxidans A8]
 gi|310761271|gb|ADP16720.1| peptidyl-prolyl cis-trans isomerase [Achromobacter xylosoxidans A8]
          Length = 653

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 80/408 (19%), Positives = 163/408 (39%), Gaps = 21/408 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IR + R W+  I L+++   F + G+      +     + +V  Q V  + F  + 
Sbjct: 1   MFEFIR-SHRRWMQFILLLLIVPSFFLVGIQGYDSFMRAEPELATVNGQPVTRAEFDQAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L    Q++G   +     +  L + +L+ L++   L     D         +   IA
Sbjct: 60  RNQLEQFRQRLGAQFDPAVIDTPALREGLLNQLINQRLLANVAVDNRFSVSDETLRNTIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     + +FS + +   LA +G++   +     + L+   V+       R    ++ 
Sbjct: 120 AIPEVQ-DNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLEPVGQSARAPGEVVA 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +    + R+V           +    + A +  W++  K   + PE  ++ Y++ D  
Sbjct: 179 ALETALTQQRTVQLRRFAAADFRSQVSATPADIQAWYDANKQQLQIPEQVQVQYLVLDEA 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKE----------ADEAF 287
              + +++ +++L + YE+NK ++  PE R    ++    P   E           D A 
Sbjct: 239 AATQGVQVKDEDLASYYEQNKNRFGQPERRRASHIMINLAPGASEDARKAARAKAEDLAK 298

Query: 288 QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           Q+     +F +LA    ++ G + +   LG  +   +    L  +IF  AK    + VI 
Sbjct: 299 QAAADPAQFAELARKNSQDAGSAANGGDLGWLAPGMLTG-PLEKAIFGQAKD-QVSGVIE 356

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              G  +  V+ I+P+      EVK  I  ++R   A+ +  E   +L
Sbjct: 357 TPSGLHVVKVTEIQPAAIKPLAEVKDQITAEVRKQLAAVRFSEMASQL 404


>gi|325122070|gb|ADY81593.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 582

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 110/523 (21%), Positives = 203/523 (38%), Gaps = 71/523 (13%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFIN 58
           +E  R   + W+ K+ L++   P  + G+       + +    +V  Q++      +   
Sbjct: 1   MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           S+K+      Q +  V   E   ++  +  K LD LVS   L Q  E +G+     ++  
Sbjct: 61  SYKE------QYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQ 114

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGM 172
            +A+ P    ++ +FS  ++ + L   G+  +  I     DH  KML+ T     F    
Sbjct: 115 MLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTST-----FADYS 168

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             S + L Q      E R++    +           SN   T ++ K+++ ++      +
Sbjct: 169 LVSKVDLMQIANLQTEQRTLHLASIKLDAYKTGLTASNQEATDYYNKHQNEFKQQASVDV 228

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEAD 284
            Y++       K    +  ELQ  Y K  E       RTV+ ++           QK A 
Sbjct: 229 DYVVLSPSMMAKPAPATEAELQQAYAKFVETQKKDAKRTVKHILITTDARDDAAAQKLAK 288

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPV 341
           E +  ++ G  F Q A +  +  S  + G   + Y P V   +   ++ SL K G  +  
Sbjct: 289 EVYAKIQGGLSFAQAASQFSEDPSSKAKGGLVEAYAPGVFSDAFDKTVLSL-KNGQVSQP 347

Query: 342 IHGSFGYVIAHV---SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
           +   +GY I      +N  PSF           A + R+T   EK K         +A  
Sbjct: 348 VKTQYGYHIIEAETQANQIPSFE----------AEKARLTAEVEKNK---------VATV 388

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI---------PY--KEQLLFRVFG-- 445
            S    S  E IV  D   ++   ++VKG +V ++         PY     +  ++F   
Sbjct: 389 YSDAVNSLNETIVGND--SLEAVVQEVKGAKVESLNGVTLATQNPYLSDPSVKIKLFNDD 446

Query: 446 -KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
            K+   +    + L +G  +WV++++   A  + L + + + K
Sbjct: 447 VKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEAK 489


>gi|254247971|ref|ZP_04941292.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
 gi|124872747|gb|EAY64463.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
          Length = 645

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/369 (20%), Positives = 146/369 (39%), Gaps = 32/369 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V +V   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D     + +   L+ +G+  ++Y +   
Sbjct: 99  ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             LS   +    V        L  +      + R V  +VL      A   P++A LT +
Sbjct: 159 YSLSLQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271
           ++ +K ++  PE   I Y+++         + +  +++  Y+ N   + +  ++R     
Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIF 278

Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                              EQL+   +   D+  Q  +K  +    A + G  L  I+ G
Sbjct: 279 IAAPGSASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKSSQDAPSAAK-GGDLGFITRG 337

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S +     D    D+ FSL K+GD + ++    G+ I   + +KP+    F EVK  IA 
Sbjct: 338 STAGGKAFD----DAAFSL-KQGDVSGIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAV 392

Query: 374 QMRITKASE 382
            ++   AS+
Sbjct: 393 DLKQQYASK 401


>gi|212219179|ref|YP_002305966.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154]
 gi|212013441|gb|ACJ20821.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154]
          Length = 522

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 127/276 (46%), Gaps = 30/276 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           ML+ I +  + W+A + L V+ + F++WG+   L S  G + TV  V  +K+        
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKIS------- 53

Query: 60  WKQELGMISQKIGFVVNSER------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
            + EL ++ Q++    + +R      A++  L ++ L NL+    L    E +G      
Sbjct: 54  -ENELNVVFQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPA 112

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-- 171
            +   I   P F  ++ KFS   F   L    +   +++    ++     V     G   
Sbjct: 113 EINQIITVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAF 171

Query: 172 MRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
           + P+ +     L++QA+ F        Y+++++      +  +  ++  +++K++++++A
Sbjct: 172 VLPNEIKNNYELINQARDF-------RYMIISSAPFLKESKVTPEMIADYYQKHRESFKA 224

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
           PE   I+Y+L       +++ +S+ E++  YE N+E
Sbjct: 225 PEKLSIAYLLLSPEMILQQVSVSDHEIKQYYESNRE 260


>gi|107028901|ref|YP_625996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116689941|ref|YP_835564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
 gi|105898065|gb|ABF81023.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116648030|gb|ABK08671.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
          Length = 645

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 74/369 (20%), Positives = 145/369 (39%), Gaps = 32/369 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V +V   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D     + +   L+ +G+  ++Y +   
Sbjct: 99  ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             LS   +    V        L         + R V  +VL      A   P++A LT +
Sbjct: 159 YSLSLQQIPASIVSSAFTPKSLAQHLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271
           ++ +K ++  PE   I Y+++         + +  +++  Y+ N   + +  ++R     
Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIF 278

Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                              EQL+   +   D+  Q  +K  +    A + G  L  I+ G
Sbjct: 279 IAAPGSASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKSSQDAPSAAK-GGDLGFITRG 337

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S +     D    D+ FSL K+GD + ++    G+ I   + +KP+    F EVK  IA 
Sbjct: 338 STAGGKAFD----DAAFSL-KQGDVSGIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAV 392

Query: 374 QMRITKASE 382
            ++   AS+
Sbjct: 393 DLKQQYASK 401


>gi|171322244|ref|ZP_02911086.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MEX-5]
 gi|171092428|gb|EDT37778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MEX-5]
          Length = 644

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/363 (19%), Positives = 144/363 (39%), Gaps = 32/363 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V ++   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAINGHKITRVEFDGAFRQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D     + +   L+ +G+  ++Y +   
Sbjct: 99  ADETQRLHLTASDNAVRDALMNDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L+   +    V           +      + R V  +VL      A   P++A LT +
Sbjct: 159 YSLALQQIPASIVASAFTPKGPAQRLSELAAQQREVQALVLTTSDYAAKVQPTDAQLTAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271
           ++ +K ++  PE   I Y+++         + ++ +++  Y+ N   + S  ++R     
Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAGASAQPTDADIKKFYDDNPTHFRSEAQVRVSHIF 278

Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                              EQL+   +   D+  Q  +K  +    A + G  L  I+ G
Sbjct: 279 IAAASDASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKNSQDAPSAAK-GGDLGFITRG 337

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S +     D    D+ F+L K+GD + V+    G+ I   + +KPS    F +VK  IA 
Sbjct: 338 STAGGKAFD----DAAFAL-KQGDVSGVVQSDLGFHILKATEVKPSLVKPFADVKDQIAV 392

Query: 374 QMR 376
           Q++
Sbjct: 393 QLK 395


>gi|116619198|ref|YP_821354.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116222360|gb|ABJ81069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 644

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 118/578 (20%), Positives = 234/578 (40%), Gaps = 60/578 (10%)

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR--SPLFHGKDNKF-SHDVFVSRLARE 144
           +++D +V+   +    E +G +     V   I +    LF   D KF   + + + LA++
Sbjct: 83  QMVDQMVTERAMAMEAERLGYQVSDADVADSIRQMVPSLF--PDGKFVGKETYAAMLAQQ 140

Query: 145 GINEKEYIDHYTKMLSRTDVVGMF----VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
            +     ID +   L R   +  F    + G   +   ++ A +   E   V+++ L   
Sbjct: 141 NMT----IDQFEADLKRQVAISRFRDIAMEGTIVTPAEIEAAFKKKNEKIKVEWVKLTAD 196

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
                + PS   L  +++     Y  PE + ++ +  D  +    + I++ +LQ  Y++N
Sbjct: 197 KYKGESQPSAQELQDFYKANVSRYTVPEKRNLTVLTADEAKMSASLNITDADLQRVYDQN 256

Query: 261 KEKYFSPEIRTVEQLVF-----PNQKEA------DEAFQSLKKGKKFIQLAEEQ----GK 305
           KE + +PE      ++      P  +EA      +   + +K G  F +LA+E     G 
Sbjct: 257 KEAFRTPERVKARHILLKTQGKPASEEAAIKAKGESLLKQIKAGGDFAKLAKENSEDPGS 316

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           +++   LG +            +IF+L K G+ + ++   +GY I      + +   +F 
Sbjct: 317 AVNGGDLGDWITHGQMVAEFDKAIFAL-KPGEVSDLVKTQYGYHIVQTLAKQDAGMRTFA 375

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS-IDLPLV---DFA 421
           EVK D+A Q +  + SE +++   R +  L       +    EK+ + +++ L    +FA
Sbjct: 376 EVKGDLATQYKKQRVSELMQQASDRAQAAL-----QKDPQHPEKVAAELNMQLAKVPNFA 430

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP---DGSYMWVQIKESIPARDRK 478
                G  +  +P         F +     K   V+ P   +   +   + + IP     
Sbjct: 431 ----PGGAIGELPANAD-----FDQSVANLKKGEVSQPVTVNNKVVVAVVDDVIPGHPST 481

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
            EEV   ++      + A  V   AN+LV +    G +     K++G  + T+  ++R  
Sbjct: 482 FEEVQGQIRDTIVANRAAAAVQRHANELVEKAKAMGGDLEKAAKSMGLDVKTSGDVDRSG 541

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVG----PVQE---KDK 589
           N         I++ FS P   V   PI   +G + V+  ++++       P Q    +D+
Sbjct: 542 NIEGLGTASYIAEGFSRPDGTVYG-PIGTPDGGTVVMKVISHTGADMAQLPAQRNAIRDE 600

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
             S   +  N    + V   L  Q  + +H ++I R +
Sbjct: 601 IKSQRARDRNTLFENGVKDMLIKQGKIKIHQDVINRLI 638


>gi|172060885|ref|YP_001808537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
 gi|171993402|gb|ACB64321.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
          Length = 644

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 72/363 (19%), Positives = 144/363 (39%), Gaps = 32/363 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V +V   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D     + +   L+ +G+  ++Y +   
Sbjct: 99  ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L+   +    V           +      + R V  +VL      A   P++A LT +
Sbjct: 159 YSLALQQIPASIVASAFTPKGPAQRLSELAAQQREVQALVLKTSDYAAKVQPTDAQLTAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271
           ++ +K ++  PE   I Y+++         + ++ +++  Y+ N   + S  ++R     
Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTDADIKKFYDDNPTHFRSEAQVRVSHIF 278

Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                              EQL+   +   D+  Q  +K  +    A + G  L  I+ G
Sbjct: 279 IAAASDASAADKAAAKTKAEQLLADVKAHPDQFAQIAQKNSQDAPSAAK-GGDLGFITRG 337

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S +     D    D+ F+L K+GD + V+    G+ I   + +KPS    F +VK  IA 
Sbjct: 338 STAGGKAFD----DAAFAL-KQGDVSGVVQSDLGFHILKATEVKPSVVKPFADVKDQIAV 392

Query: 374 QMR 376
           Q++
Sbjct: 393 QLK 395


>gi|163856532|ref|YP_001630830.1| peptidyl-prolyl cis-trans isomerase D [Bordetella petrii DSM 12804]
 gi|163260260|emb|CAP42562.1| peptidyl-prolyl cis-trans isomerase D [Bordetella petrii]
          Length = 653

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/411 (18%), Positives = 157/411 (38%), Gaps = 19/411 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E++R   R W+  I L+++   F + G+      +     + +V  Q +  S F  + 
Sbjct: 1   MFELLRN-HRRWMQFILLILIVPSFFLVGIQGYESFIRREPELATVAGQPITRSEFDMAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L    Q++G   +     +  + +++L+ L+    L Q   D       G +   IA
Sbjct: 60  RNQLEQFRQRLGSQFDPALVDTPAMREQLLNQLIDQRLLAQVAIDNRFSVSDGTLRNTIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     + +FS + +   LA +G+    +     + L+   V+          + ++ 
Sbjct: 120 AIPQVQ-DNGRFSPERYRQVLAAQGMTPTSFEAGLRRDLAVGRVLEPINQSAGAPDAVVA 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +    + R+V           A    S   +  W++  K     PE     Y++ D  
Sbjct: 179 SLESALTQQRTVQLRRFAAADYRAQVSVSPEDIQTWYDGNKQQLTVPEQVTAQYLVLDEA 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AF 287
              + +++  +++ + YE+NK ++  PE R    ++      A E             A 
Sbjct: 239 AATQGVQVKEEDIASYYEQNKNRFGQPERRRASHIMIELPAGASEDARKAAHAKAEALAK 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHG 344
           Q+     +F +LA    +       G       P +    L  S+F LAK    + V+  
Sbjct: 299 QAAADPAQFAELARANSQDAGSAGKGGDLGWLAPGMLAGPLEKSVFGLAKD-QVSGVVES 357

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
             G  I  V+ I+P+      EV+ +I  ++R   A+ +  E   +L E +
Sbjct: 358 PSGLHIVKVTEIQPAAIKPLAEVRDEITAEIRKQIAATRFSEMATKLTEIV 408


>gi|332524209|ref|ZP_08400435.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332107544|gb|EGJ08768.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 635

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 175/406 (43%), Gaps = 27/406 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD-ALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M + +R  SR  +  + ++++F  F+ +G+   + F+  G+ TV  VG Q +  + +  +
Sbjct: 1   MFDFVRNHSRLVLGIL-VLLIFPSFIFFGVQGYSRFTEGGAVTVAEVGGQAISRAEWDAA 59

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +  +  + ++    ++ +   +  L ++ LD LV    L        L  D  R+    
Sbjct: 60  HQNNIERLRRQRP-ELDPKLLETPELKRETLDGLVRDRVLMATARQYHLVPDDARLQRLF 118

Query: 120 ARSPLFHGKDNKFSHDVFVSR--LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
              P F G  N    D  V+R  LA +G++ + +     +      V+G           
Sbjct: 119 VTDPQFAGLRNP---DGSVNREILAAQGMSVEAFEQQLRQEFGMQQVLGAVAQSSFTPPA 175

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +   +     + R V     +     A A P +A L  ++E +   +RAPE  +I Y++ 
Sbjct: 176 VAATSLDALLQRREVQIQRFDAAAYRAQATPGDADLQAYYEAHSGEFRAPEQAQIEYVVL 235

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKEADEAFQSLKKGK 294
           D+    K + +  ++L+  YE+N  +Y   E R    ++    P+   ADE   +  + +
Sbjct: 236 DLAALAKDVAVPEEDLRRYYEENASRYTQAEERRASHILIRVDPS-APADEKKAAKARAE 294

Query: 295 KFIQLAEEQGKSLSDISL------GSFSK----EYIPDVSLA----DSIFSLAKKGDFTP 340
           + +        S ++++       GS S+    ++     +A    D+++++ K G+ + 
Sbjct: 295 QLLAEVRRSPNSFAEVARKNSQDPGSASRGGDLDFFGRGMMAKPFEDAVYAM-KTGEISN 353

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           VI   FGY +  ++ ++     +F  V+ +I  ++R + A ++  E
Sbjct: 354 VIETDFGYHVITLTGLRGGQKKAFDTVRAEIEQEVRRSLAQKRYAE 399


>gi|332284237|ref|YP_004416148.1| peptidyl-prolyl cis-trans isomerase D [Pusillimonas sp. T7-7]
 gi|330428190|gb|AEC19524.1| peptidyl-prolyl cis-trans isomerase D [Pusillimonas sp. T7-7]
          Length = 655

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 168/398 (42%), Gaps = 40/398 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M + IR   R  + ++ L+VL +P F++ G+S     VSG   +V++G   +    F  +
Sbjct: 1   MFDFIRTHQR--LMQLVLLVLILPSFVLIGVSGYTNYVSGDHDIVTLGDTSITQQDFDQA 58

Query: 60  WKQELGMISQKIG-----FVVNSERARSVGLDKKILDN--LVSGATLDQF-IEDIGLEAD 111
            + +L  + Q         +++S  ARS  L+  ++D   LV  AT ++F + D  L   
Sbjct: 59  RRNQLQQLQQSSQGAFDPAILDSPAARSALLES-LIDRTVLVETATKERFSVSDSVLRQ- 116

Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
                  IA  P     D +FS + +   LA  G+  +++       L+   V+G     
Sbjct: 117 ------TIASMPQLQ-VDGQFSAERYNDVLASAGLTTRDFEQSQRGELALGRVLGPVTMT 169

Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
               ++++D+ K    E R++  +             ++A +  W+EK K +   PE   
Sbjct: 170 ASVPSVVIDKLKLALTEQRTIRLLAFPAAEQEKEVQITDADIQDWYEKNKQSLELPEQLS 229

Query: 232 ISYILFDVHEKEKKI-EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS- 289
             Y+L +       + +IS+++LQ  YE+NK +Y  P    V  +      +A EA +S 
Sbjct: 230 AQYLLLNEEAAMANLPQISDEDLQKYYEQNKARYVQPARVNVSHIQINIPADASEAQRSE 289

Query: 290 -LKKGKKFIQL---------------AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
            L K +   +                +++ G +     LG  +K   P   L   +F+L 
Sbjct: 290 ALAKAQDIAKRAQADAAAFAELAQNESQDAGTAKEGGKLGWITKGSWP-AQLEQVVFAL- 347

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           K G  +  + G  GY +   + ++     SF+E K  +
Sbjct: 348 KAGQVSDAVEGPGGYHVFLANEVQAEKGESFEEAKAKV 385


>gi|33592803|ref|NP_880447.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis Tohama
           I]
 gi|33572451|emb|CAE42019.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis Tohama
           I]
 gi|332382216|gb|AEE67063.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis CS]
          Length = 651

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/277 (19%), Positives = 116/277 (41%), Gaps = 2/277 (0%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M EIIR   R W+  I L+++   F++ G+      ++    + +V  Q V  S F  + 
Sbjct: 1   MFEIIRT-HRRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L  + Q++G   +     +  + +++L+ L+    L     D G     G +   IA
Sbjct: 60  RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     + +FS + +   LA +G++   +     + L+   V+            +  
Sbjct: 120 AIPQVQ-DNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVAR 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +    + R+V           A    S   +  W++  ++  R PE  +  Y++ D  
Sbjct: 179 SVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEA 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
              + +++ ++++ + YE+NK ++  PE R V  ++ 
Sbjct: 239 AATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMI 275


>gi|291614259|ref|YP_003524416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans
           lithotrophicus ES-1]
 gi|291584371|gb|ADE12029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans
           lithotrophicus ES-1]
          Length = 628

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 100/527 (18%), Positives = 222/527 (42%), Gaps = 53/527 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + +++  R  + +I L ++ +PF  WG++    S SG++ + +V  +K+    F ++ 
Sbjct: 1   MFDFVQEKRR--LVQIVLALIILPFAFWGVTSYRNS-SGTAPLATVNGEKIGQQEFDSAM 57

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            Q+   + +  G   +        +   +LD LV+   +    + +GL     +V   I 
Sbjct: 58  NQQQQRVREMAGANFDPAFFDKPEIKFSLLDRLVTQHLMAMEAKKVGLSITDEQVGQIIV 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV-GGMRPSNLLL 179
               F  +D +F    + + L  +G     +     + +    +   +   G  P ++  
Sbjct: 118 NIGAFQ-QDGRFDRQRYEAVLRDKGKTPSGFDAEIRQAVLLQQLTESYTQNGYAPESI-- 174

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             A++    N     + + +    A       S+  +++++ K    ++ PE  ++ Y++
Sbjct: 175 --AEKLIHLNEQQRVVAIADLDAAAFVKQVKLSDGAVSEYYNKNLQEFQLPERAQVQYVV 232

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-- 294
                   ++++ ++E++  YE+++  + + E R    ++    K+A +A +   + K  
Sbjct: 233 LSSDSLLSQVKVRDEEVKQYYEEHQADFGTQEQRHAAHILITVPKQASDAEKQAARTKAE 292

Query: 295 -----------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                      KF  LA    ++ G + +   LG F +  +      DS+FSL K G  +
Sbjct: 293 QILKLVKQSPAKFAALAKQYSQDPGSASNGGDLGEFGRGAMVK-PFEDSVFSL-KVGQVS 350

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
            ++   FGY I  +  +KP+   +  EV+  I  Q+++ +A++   E  ++         
Sbjct: 351 DLVQTDFGYHIIKLIAVKPAKIQALAEVRDMIIQQLKLQRANDMFAELAEK------FNN 404

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDV-------KGKEVAAIPYKEQLLFRVFGKDDPLSK 452
           ++ E S   K      P  + A   V       KG+  A + + +++L  VF  D   +K
Sbjct: 405 TVYEQSDSLK------PAAELAKLSVQQGVWLSKGQPPAGL-WTDKVLQAVFSDDAIKNK 457

Query: 453 DHTVALPDG--SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
            +T AL  G    +  ++ +  PA  R L EV   +++    ++ +E
Sbjct: 458 RNTAALEVGPNKLLAARVTDYKPASVRPLTEVSAAIQQKLLQLQASE 504


>gi|189184244|ref|YP_001938029.1| peptidyl-prolyl cis-trans isomerse D [Orientia tsutsugamushi str.
           Ikeda]
 gi|189181015|dbj|BAG40795.1| peptidyl-prolyl cis-trans isomerse D [Orientia tsutsugamushi str.
           Ikeda]
          Length = 517

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 167/394 (42%), Gaps = 42/394 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQK-VPFSSFINS 59
           ML  +R AS +   KI +++L +  + W +     S + SS +V+  + K +  S F+ +
Sbjct: 1   MLNKLRTASHSIAFKILILILILASVFWSIGTMFHSSNNSSDIVTFTKAKNITKSEFMQA 60

Query: 60  WKQELGMISQKIGFVVNSER--ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            K  +  I Q      NS++       + + +L NL+S   L+Q   +  L      V+ 
Sbjct: 61  LKLAMHQIPQ------NSDQNLLTQNNIRELVLSNLISTHVLEQLAHEYNLTLSTAAVFK 114

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  S  F+   N F  ++F + L    I+E +Y D   K      ++  F+      ++
Sbjct: 115 FIQNSKAFNNNQN-FDINIFRNILKNLHISEPQYFDQAAKQQLSEILLRQFINNNYVPSI 173

Query: 178 LLDQAKRFYFENRSVDYIV--LNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISY 234
           L         E R++  +   L N  + +  D PS+  L +++   +  +  PE + ISY
Sbjct: 174 LTKNIINLSAETRNIQLVSIDLQNEQLQSTLDSPSSEQLQEFYNNNQSKFEKPEQRHISY 233

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKY-----FSPEIRTVEQLVFPNQKEADEAFQS 289
           I+ D +  + K+ + N  L+  Y  + +++     F+  I  V +    +Q   D+ F  
Sbjct: 234 IVLDNNYFKNKVIVDNKSLEEFYRTHSDQFSEKNSFTKNIAEVREKYVNHQ--VDKLFND 291

Query: 290 LKKGKKFIQLAEEQGKSLSD------------ISLGSFSKEYIPD----VSLADSIFSLA 333
                  I L E++  S S+            ++L + +K+ + +     ++ D+IF+L 
Sbjct: 292 T------ITLLEDEVASGSNSSEIAKMLNVKLLTLNNVTKQKLANNKILSNVTDAIFALE 345

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           +     P+   S   +I  +  I P+    F  V
Sbjct: 346 EHETSYPLDVSSKMLIIVSIQKIIPTAVEKFDNV 379


>gi|108758423|ref|YP_630863.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622]
 gi|108462303|gb|ABF87488.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622]
          Length = 524

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 162/391 (41%), Gaps = 72/391 (18%)

Query: 16  IFLVVLFVPF-LIWGLSDALFSVSGSST----VVSVGRQKVPFSSFINSWKQELGMISQK 70
           +F++ + V F L +G   + F  +G +T    V SV  +++P   F  +W Q++  +  +
Sbjct: 16  LFIIGIAVVFTLQFGPGSSGFGATGGATAPGSVASVNGKEIPLRDFAAAWAQQMSFLRSQ 75

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
            G  V    AR  G+  ++LD LV+   L Q  E  G+ A    +   I ++  F  KD 
Sbjct: 76  -GSPVPESLARQFGMHNQVLDRLVNTELLAQAAERHGIAASDDELRKLIHQNTDFQ-KDG 133

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
           +F  + +   L       K   D +   L R       +  +R + ++ D   R  FE  
Sbjct: 134 QFDFERYQQVL--RDFYRKSPQD-FEAELRRQLAAQKMMDVVRGNAVVSDDEVRARFEKE 190

Query: 191 SVDYIVLNNRHVPA-----IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
                V+  R +PA     +  P+ A L +W +                     HEK   
Sbjct: 191 GNQAKVVFARFLPAMYADKVPSPTAAQLAEWKK--------------------AHEK--- 227

Query: 246 IEISNDELQAEYEKNKEKYFSPE-IRTVEQLV-FPNQKEAD------EAFQSLKK----G 293
                 +++  +E N+  Y  PE IR  + LV  P +  AD      E  Q+L+K    G
Sbjct: 228 ------DIKEYFEANRFVYQQPERIRARQVLVKLPPEATADQKKAALEKAQALRKEIEGG 281

Query: 294 KKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           K F Q+A +         +G  L  +  GS+      + +LAD+ F+L K+G+ T  +  
Sbjct: 282 KDFAQVARDSSEDPGSKARGGDLGWVERGSW------EPALADAAFAL-KQGEVTQPVET 334

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            FG  +  V   + +     ++V+ +IA  +
Sbjct: 335 KFGVHLVKVDEKQAAQDKKLEDVQDEIATTL 365


>gi|126439578|ref|YP_001059347.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           668]
 gi|126219071|gb|ABN82577.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           668]
          Length = 644

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 77/407 (18%), Positives = 158/407 (38%), Gaps = 43/407 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +   FL+++ +P L I G+         S+ V +V   K+  + F  +
Sbjct: 1   MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   +
Sbjct: 59  LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118

Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D  F  + +   LA +G+   +Y +     L+   +    V       
Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +  +      + R V  +VL +    A   P++A ++ +++ +K  +   E   I Y++
Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273
           +         + S+ +++  Y+ N   Y +  ++R                        E
Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAARAKAE 298

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329
           QL+   +   D          +F Q+AE+  +     +    LG  ++      +  D  
Sbjct: 299 QLLAEVKAHPD----------RFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
               KK + + V+ G FG+ I   +++KP+      EVK  IA  +R
Sbjct: 349 AFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLR 395


>gi|121601506|ref|YP_993264.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           SAVP1]
 gi|124383444|ref|YP_001029291.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           NCTC 10229]
 gi|126449228|ref|YP_001080774.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           NCTC 10247]
 gi|167738127|ref|ZP_02410901.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia
           pseudomallei 14]
 gi|217421364|ref|ZP_03452868.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 576]
 gi|237812671|ref|YP_002897122.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           MSHR346]
 gi|251766653|ref|ZP_04819742.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           PRL-20]
 gi|254179433|ref|ZP_04886032.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1655]
 gi|254198164|ref|ZP_04904586.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei S13]
 gi|254297318|ref|ZP_04964771.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           406e]
 gi|254358198|ref|ZP_04974471.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           2002721280]
 gi|121230316|gb|ABM52834.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           SAVP1]
 gi|124291464|gb|ABN00733.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           NCTC 10229]
 gi|126242098|gb|ABO05191.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           NCTC 10247]
 gi|148027325|gb|EDK85346.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           2002721280]
 gi|157806973|gb|EDO84143.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           406e]
 gi|169654905|gb|EDS87598.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei S13]
 gi|184209973|gb|EDU07016.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1655]
 gi|217395106|gb|EEC35124.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 576]
 gi|237505475|gb|ACQ97793.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           MSHR346]
 gi|243065067|gb|EES47253.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           PRL-20]
          Length = 644

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 77/407 (18%), Positives = 158/407 (38%), Gaps = 43/407 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +   FL+++ +P L I G+         S+ V +V   K+  + F  +
Sbjct: 1   MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   +
Sbjct: 59  LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118

Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D  F  + +   LA +G+   +Y +     L+   +    V       
Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +  +      + R V  +VL +    A   P++A ++ +++ +K  +   E   I Y++
Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273
           +         + S+ +++  Y+ N   Y +  ++R                        E
Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAE 298

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329
           QL+   +   D          +F Q+AE+  +     +    LG  ++      +  D  
Sbjct: 299 QLLAEVKAHPD----------RFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
               KK + + V+ G FG+ I   +++KP+      EVK  IA  +R
Sbjct: 349 AFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLR 395


>gi|126452826|ref|YP_001066614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1106a]
 gi|242317337|ref|ZP_04816353.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1106b]
 gi|126226468|gb|ABN90008.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1106a]
 gi|242140576|gb|EES26978.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1106b]
          Length = 644

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 77/407 (18%), Positives = 158/407 (38%), Gaps = 43/407 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +   FL+++ +P L I G+         S+ V +V   K+  + F  +
Sbjct: 1   MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   +
Sbjct: 59  LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118

Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D  F  + +   LA +G+   +Y +     L+   +    V       
Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +  +      + R V  +VL +    A   P++A ++ +++ +K  +   E   I Y++
Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273
           +         + S+ +++  Y+ N   Y +  ++R                        E
Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAE 298

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329
           QL+   +   D          +F Q+AE+  +     +    LG  ++      +  D  
Sbjct: 299 QLLAEVKAHPD----------RFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
               KK + + V+ G FG+ I   +++KP+      EVK  IA  +R
Sbjct: 349 AFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLR 395


>gi|53719046|ref|YP_108032.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei K96243]
 gi|76809896|ref|YP_333865.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1710b]
 gi|254189176|ref|ZP_04895687.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254259824|ref|ZP_04950878.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1710a]
 gi|52209460|emb|CAH35412.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei K96243]
 gi|76579349|gb|ABA48824.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1710b]
 gi|157936855|gb|EDO92525.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254218513|gb|EET07897.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1710a]
          Length = 644

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 77/407 (18%), Positives = 158/407 (38%), Gaps = 43/407 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +   FL+++ +P L I G+         S+ V +V   K+  + F  +
Sbjct: 1   MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   +
Sbjct: 59  LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118

Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D  F  + +   LA +G+   +Y +     L+   +    V       
Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +  +      + R V  +VL +    A   P++A ++ +++ +K  +   E   I Y++
Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273
           +         + S+ +++  Y+ N   Y +  ++R                        E
Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAARAKAE 298

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329
           QL+   +   D          +F Q+AE+  +     +    LG  ++      +  D  
Sbjct: 299 QLLAEVKAHPD----------RFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
               KK + + V+ G FG+ I   +++KP+      EVK  IA  +R
Sbjct: 349 AFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLR 395


>gi|329894935|ref|ZP_08270734.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC3088]
 gi|328922664|gb|EGG29999.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC3088]
          Length = 624

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 115/547 (21%), Positives = 222/547 (40%), Gaps = 50/547 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGR--QKVPFSSFIN 58
           ML+ IR +++  V K+ + ++ + F ++G+   L   S  S  +  G   + V      N
Sbjct: 1   MLQDIRNSTQGPVFKVIVGLIVLSFALFGVESILLGGSDDSVALVNGDKIRAVEVQQAAN 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
             KQ+   I+  +G   +        L  + L+ LV      Q+ E +GL A   ++  +
Sbjct: 61  RQKQQ---IAAMLGENFDPSLIDDAQLSARALEGLVGNKLQQQWAESLGLTASDVQLGAQ 117

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGIN-----EKEYIDHYTKMLSRTDVVGMFVGGMR 173
           +A  P F   D KFS +++   LA  G       E   +D   K L+   +   FV G  
Sbjct: 118 VAAIPAFQ-IDGKFSAELYKQSLAAAGFTPLTFREALRVDEIVKQLNGGLLASEFVTGAE 176

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
              L      R   E RSV Y  +         + +   +  +++     + + E   + 
Sbjct: 177 ARAL-----ARVNGETRSVRYAKVAGDRFQNTVEITQDQIQAYYDSNAAQFVSEEAVVLD 231

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVFPNQKEADEAF----- 287
           YI     +  +   ++  +L+A YE+    Y +  E R    L+     EADEA+     
Sbjct: 232 YITLRADDFVEP--VAEADLRAAYEQEISSYAYQDEARVSHILLIQGDDEADEAYAQRIQ 289

Query: 288 ---QSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               +L  G+ F  +AE    + G S     LG  + +  P   + ++I  L       P
Sbjct: 290 SAQTALTDGEAFSVVAERLSDDIGSSSDGGDLGYTAGDVFP-AEMEEAIKGLDINEVSGP 348

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
           V+  +  ++I  V++ + S   SF E++ ++   +    A  ++    + L++     T 
Sbjct: 349 VLTDAGTHLIT-VTDRRSSEPPSFMEMRSELEASLSQADAQRRLVSQVEALKDLTYTATD 407

Query: 401 MDEISRREKIVSIDL----PLVDFAGKDVKGKE-VAAIPYKEQLLFRVFGKDDPLSKDHT 455
           + E +   + + +D+    P+    G+ V G + V A  + + ++   + +   +S++  
Sbjct: 408 LREPA---QTLGLDVVRSGPITRRGGQGVLGDDRVIAAAFSDLVIEEGWSEVIEVSENAF 464

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           VAL        ++ E  PA  + +E+V +D      T +  EE        +L+    G+
Sbjct: 465 VAL--------KLVEHQPAAPQSIEQV-SDRIVSVLTAQAEEEALRAFGNELLDQLAGGR 515

Query: 516 NFRDIGK 522
              DI +
Sbjct: 516 TIEDIAQ 522


>gi|226197150|ref|ZP_03792727.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pakistan 9]
 gi|225930529|gb|EEH26539.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pakistan 9]
          Length = 644

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 77/407 (18%), Positives = 158/407 (38%), Gaps = 43/407 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +   FL+++ +P L I G+         S+ V +V   K+  + F  +
Sbjct: 1   MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   +
Sbjct: 59  LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118

Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D  F  + +   LA +G+   +Y +     L+   +    V       
Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +  +      + R V  +VL +    A   P++A ++ +++ +K  +   E   I Y++
Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273
           +         + S+ +++  Y+ N   Y +  ++R                        E
Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAE 298

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329
           QL+   +   D          +F Q+AE+  +     +    LG  ++      +  D  
Sbjct: 299 QLLAEVKAHPD----------RFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
               KK + + V+ G FG+ I   +++KP+      EVK  IA  +R
Sbjct: 349 AFALKKDEISGVVQGDFGFHILKATDVKPAVVKRLAEVKDSIATDLR 395


>gi|113867510|ref|YP_725999.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
 gi|113526286|emb|CAJ92631.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
          Length = 644

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 106/479 (22%), Positives = 190/479 (39%), Gaps = 65/479 (13%)

Query: 69  QKIGFVV--NSERARSV-----------GLD--KKILDNLVSGATLDQFIEDIGLEADHG 113
           Q+I  VV   SERAR V           G D  K +LD L+    +   +    L     
Sbjct: 53  QEIDNVVRDQSERARQVLGASYDPRQFEGPDARKAVLDQLILQRVMASAVAREHLTVSDA 112

Query: 114 RVWGEIARSP----LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
           ++  EI+  P    L   KD K     ++  L  +G+  +++ D   +    T  +G  V
Sbjct: 113 KLLEEISNLPAIAQLPRTKDGKVDDKAYLQLLQSQGMTPEQF-DARMRFELATQQLGASV 171

Query: 170 GGMR--PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
                 P +LL D+      + R V  ++       A   P  A L  +++ ++  +  P
Sbjct: 172 AATAFVPKSLL-DRLIAVRDQQRDVQALLFKPAGYTAKVQPDAAALKAYYDSHQQAFSVP 230

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  ++ Y+L           ++ +EL++ Y+ N  ++   E R    ++    K+A  A 
Sbjct: 231 EQAKVEYLLLSGEALAATQAVTPEELKSYYDSNIARFRIDEQRRASHILISAPKDAPAAQ 290

Query: 288 QSLKKGKK-------------FIQLAE---------EQGKSLSDISLGSFSKEYIPDVSL 325
           +   K K              F  +A          E+G  L  +  G+  K +      
Sbjct: 291 RQAAKDKATKLLEDLRKHPDTFADVARKNSQDPGSAEKGGDLGFMGRGALVKPF------ 344

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            D++++L K G  + V+   +GY I  ++ IKP+ T   + V+ ++  ++R      K  
Sbjct: 345 EDAMYAL-KDGQVSDVVETDYGYHIIKLTGIKPAETKPLEAVRTELEAELR------KQF 397

Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI----PYKEQLLF 441
            D K  E+  A G ++ E +   K  +    L      +V  +   A+    P     L 
Sbjct: 398 ADKKFAEQADAFGNTVYEQADSLKPAADKFKLTIQTADNVTRQPNPALGAQSPLNNDKLL 457

Query: 442 RVFGKDDPL-SKDHT--VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
           +    DD + +K +T  V +   + +  +I E  PA  RK EEV   V++ +   + AE
Sbjct: 458 KALFSDDAIKNKRNTEAVQVAPNTLVAARIVEYRPAAVRKFEEVEAKVREGYIAQQAAE 516


>gi|33597580|ref|NP_885223.1| peptidyl-prolyl cis-trans isomerase D [Bordetella parapertussis
           12822]
 gi|33574008|emb|CAE38331.1| peptidyl-prolyl cis-trans isomerase D [Bordetella parapertussis]
          Length = 671

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/277 (19%), Positives = 116/277 (41%), Gaps = 2/277 (0%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M EIIR   R W+  I L+++   F++ G+      ++    + +V  Q V  S F  + 
Sbjct: 21  MFEIIR-THRRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 79

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L  + Q++G   +     +  + +++L+ L+    L     D G     G +   IA
Sbjct: 80  RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 139

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     + +FS + +   LA +G++   +     + L+   V+            +  
Sbjct: 140 AIPQVQ-DNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVAR 198

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +    + R+V           A    S   +  W++  ++  R PE  +  Y++ D  
Sbjct: 199 SVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEA 258

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
              + +++ ++++ + YE+NK ++  PE R V  ++ 
Sbjct: 259 AATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMI 295


>gi|206560356|ref|YP_002231120.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia J2315]
 gi|198036397|emb|CAR52293.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia J2315]
          Length = 644

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/369 (19%), Positives = 146/369 (39%), Gaps = 32/369 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V +V   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D     + +   L+ +G+  ++Y +   
Sbjct: 99  ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L+   +    V        L  +      + R V  +VL      A   P++A LT +
Sbjct: 159 YSLALQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271
           ++ +K ++  PE   I Y+++         + +  +++  Y+ N   + +  ++R     
Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIF 278

Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                              EQL+   +   D+  Q  +K  +    A + G  L  I+ G
Sbjct: 279 IAAPGSASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKSSQDAPSAAK-GGDLGFITRG 337

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S +     D    D+ FSL K+GD + ++    G+ I   + +KP+    F EVK  IA 
Sbjct: 338 STAGGKAFD----DAAFSL-KQGDVSGIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAI 392

Query: 374 QMRITKASE 382
            ++   AS+
Sbjct: 393 DLKQQYASK 401


>gi|33601983|ref|NP_889543.1| peptidyl-prolyl cis-trans isomerase D [Bordetella bronchiseptica
           RB50]
 gi|33576421|emb|CAE33499.1| peptidyl-prolyl cis-trans isomerase D [Bordetella bronchiseptica
           RB50]
          Length = 671

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/277 (19%), Positives = 116/277 (41%), Gaps = 2/277 (0%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M EIIR   R W+  I L+++   F++ G+      ++    + +V  Q V  S F  + 
Sbjct: 21  MFEIIR-THRRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 79

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L  + Q++G   +     +  + +++L+ L+    L     D G     G +   IA
Sbjct: 80  RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 139

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     + +FS + +   LA +G++   +     + L+   V+            +  
Sbjct: 140 AIPQVQ-DNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVAR 198

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +    + R+V           A    S   +  W++  ++  R PE  +  Y++ D  
Sbjct: 199 SVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEA 258

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
              + +++ ++++ + YE+NK ++  PE R V  ++ 
Sbjct: 259 AATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMI 295


>gi|153837998|ref|ZP_01990665.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus
           AQ3810]
 gi|149748606|gb|EDM59465.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus
           AQ3810]
          Length = 459

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 102/215 (47%), Gaps = 7/215 (3%)

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
           + + + R +  + ++        + ++  +  +++   DN+  PE  ++SY+       +
Sbjct: 25  KLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVSYVELSAEALK 84

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLKKGKKFIQLAE 301
           K+I++++++++  Y+++ +KY S E R V  ++     E  A      L  G  F  +A+
Sbjct: 85  KQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGADFAAVAQ 144

Query: 302 EQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           E+    G + +   LG   ++ + D +  ++ F+L   GD + ++   FGY I  +  +K
Sbjct: 145 EKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDMSGLVKSDFGYHIIKLEELK 203

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +    F EV  +I  ++   KA ++  E    LE
Sbjct: 204 DAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELE 238


>gi|254294057|ref|YP_003060080.1| hypothetical protein Hbal_1695 [Hirschia baltica ATCC 49814]
 gi|254042588|gb|ACT59383.1| hypothetical protein Hbal_1695 [Hirschia baltica ATCC 49814]
          Length = 634

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/431 (19%), Positives = 178/431 (41%), Gaps = 13/431 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML I+R+  R+ +  + + +L V     GL D +FS S    ++S G + +      N  
Sbjct: 1   MLSIVRRMVRSKLMLVVIGLLIVGLAGMGLPD-MFSSSEPRGMISAGDRFIVKRDIDNRI 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
              L  + +  G  ++ + A   G+ ++IL ++ S   L  F +   + A    V   + 
Sbjct: 60  DTYLRSVRESEGRTISRQEAAKAGVIQQILQSVASETALLAFADKEKISASRYAVTDMVV 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAR-EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            +P F         D      AR +G++ ++   +  +  +R  +      G+   + L 
Sbjct: 120 NAPRFKNAVTGEFDDASFKDFARLQGLSVRQLETNLKESFTREYIADAVSTGVNTPDALG 179

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                   E R   Y+ + N        P++  +  ++E+ K  +  P+ K +S +    
Sbjct: 180 KVWITSQSEQREFSYVKIPNDVSDEGILPTDEEVAAFYEENKTAFTQPKRKALSILSISP 239

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +    +EI    L+ EY+   +++ SPE R +++    +++   +A   +  G      
Sbjct: 240 IDFIGSVEIPETVLKDEYDLRIKEFSSPESREIKEFSSSDRRLVQQAVDEIGAGGDV--- 296

Query: 300 AEEQGKSLSDISLGS--FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            E    SL D+ + +   +++ I D   A + F + +   F     G   +  A+V  I 
Sbjct: 297 -ETVLSSLPDLVVTTKIVTRDQISDEEYAKTAFIVPEDTHFGVFELGEGNWTGAYVDTIY 355

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           P     F+ V   I  ++    A +  +   + + +F+  G +++E +      ++ +PL
Sbjct: 356 PGTPKPFETVSDQIFTELATVAAEQIFERKQEEMFDFVGGGFNLEEAAD-----ALGVPL 410

Query: 418 VDFAGKDVKGK 428
           + ++  D +G+
Sbjct: 411 MKYSAIDAQGR 421


>gi|262370474|ref|ZP_06063800.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
 gi|262314816|gb|EEY95857.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
          Length = 621

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 104/519 (20%), Positives = 209/519 (40%), Gaps = 63/519 (12%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFIN 58
           +E  RK  + W+ K  L++   P  + G+ +  FS      V SV  Q +      +   
Sbjct: 1   MESFRKVIKGWLGKALLILFLTPLALVGI-EGYFSSGSKDAVKSVNGQDISEKELETLTA 59

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           S+K++    +     ++N        +  K +D L++   L Q  E +G+     ++   
Sbjct: 60  SFKEQFLAYANGDETLLNQSF-----IKDKAMDQLIANTLLLQQAEKLGISLSDTQIEQM 114

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGMR 173
           IA+ P F  ++ KFS   + S L   G++    +     DH  KM+  T     FV    
Sbjct: 115 IAQQPSFQ-ENGKFSETRYSSYLQSVGMSSDALVANLRQDHALKMMRST-----FVDYAL 168

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            S L + Q      E R+V +  +N          S   +  +++++   ++      + 
Sbjct: 169 VSKLDIQQIANLQTEQRTVQFANVNLDEYKKNVKVSAQEIENYYKQHPAMFKQVASVDVD 228

Query: 234 YILF-DVHEKEKKIEISNDELQAEYEK---NKEKYFSPEIRTVEQLVFPN-------QKE 282
           Y+L    +       +++ ELQ  Y +    ++   +P ++ +  L+  +       +K 
Sbjct: 229 YVLLAPANVPAAASPVTDAELQQAYTQFVEAQKDNVAPLVKHI--LITTDARTDAEAKKR 286

Query: 283 ADEAFQSLKKGKKFI----QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           A+E    +K G  F     Q +E+     +  +L  ++K    D +   ++ SL K G  
Sbjct: 287 AEEVVAKIKAGTSFAAAAAQYSEDTASKANGGALAVYNKGTFGD-AFDQAVASL-KSGQV 344

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
           +  +   FGY +  +    P+  + SF+  K  +  +++  K +    +    L E +  
Sbjct: 345 SAPVKTEFGYHV--IETDAPAVKLPSFENEKARLTAEVQKNKTANAFSDTVNSLNELVVD 402

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV---------AAIPYKEQLLFRVFGKDD 448
             ++D +S+  K V +         + VKG  +         AA+  K   LF    K+ 
Sbjct: 403 SDALDVVSQEVKGVQV---------QTVKGMTLSTQHPVLSNAAVKVK---LFNDDVKNG 450

Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
             +   ++ LP+G  +W ++++   A  + L+E    VK
Sbjct: 451 DRNATSSIQLPNGDVVWAKVRDYHAAGVQTLQEATPRVK 489


>gi|88703271|ref|ZP_01100987.1| peptidyl-prolyl cis-trans isomerase D [Congregibacter litoralis
           KT71]
 gi|88701985|gb|EAQ99088.1| peptidyl-prolyl cis-trans isomerase D [Congregibacter litoralis
           KT71]
          Length = 622

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 183/411 (44%), Gaps = 37/411 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-GRQKVPFSSFINS 59
           ML+ IR  ++  VAKI + ++ + F I+G+   LFS  GS  V  V G +  PF     +
Sbjct: 1   MLQDIRANAQGTVAKIIIGLIVISFSIFGIESLLFS-GGSDGVAEVNGEEITPF-----A 54

Query: 60  WKQELGMISQKIGFVVNSERARSVGLD-----KKILDNLVSGATLDQFIEDIGLEADHGR 114
            +QE+  + Q+    +  E A    LD     ++ L+ L+    + Q   D+ L      
Sbjct: 55  LQQEVS-VQQRRLLSILGENADPALLDQAQLSQQALETLIQREIIKQAAADLELTTSDQA 113

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   I     F   D +FS D+F S LA  G         + + LS    +G    G+  
Sbjct: 114 LADIIGSMGQFQ-IDGQFSPDMFQSALASAGFTPA----LFRERLSEDVEIGQLRAGIAG 168

Query: 175 SNLL----LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
           S+      L+ A     E R V Y+ L      A  + S+  +  ++    + +++ E  
Sbjct: 169 SDFTTAAELELASAIALEGRDVRYVSLPLIDFMASVEVSDEAVEAFYNDNPERFQSEEQL 228

Query: 231 RISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKY-FSPEIRTVEQLVFPNQKE----AD 284
            + Y+   +   ++ IE I  + ++ E+E  ++++  + E R    LV  + +E      
Sbjct: 229 VLEYVEITL---DRYIEDIDEERVREEFELVRDEFELATEARVSHILVEGDDEERAARIA 285

Query: 285 EAFQSLKKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           EA  +L  G  F + A E     G S  +  LG  + +  P+ ++ D++ +LA  G+ + 
Sbjct: 286 EAQAALDAGMSFAEAAAEYSDDIGSSQFEGDLGYTAGDTFPE-AMEDAVANLA-VGERSA 343

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            +    G  +  V++ +    VSF+EV +++ +++    A+ ++  D +RL
Sbjct: 344 PVETEAGTHLLLVTDRREGSNVSFEEVAEELEDRIARRDAAAELLSDVERL 394


>gi|255318960|ref|ZP_05360185.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SK82]
 gi|262378304|ref|ZP_06071461.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SH164]
 gi|255303977|gb|EET83169.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SK82]
 gi|262299589|gb|EEY87501.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SH164]
          Length = 623

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 95/508 (18%), Positives = 201/508 (39%), Gaps = 39/508 (7%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFIN 58
           +E  RK  + W+  + L++   P    G+       +  +   +V  Q++      S   
Sbjct: 1   MESFRKVIKGWLGIVLLILFLTPLAFVGIEGYFSGGNKENVAATVNGQEISKKELESLTK 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           S+K+      Q + FV   E   +   + +  LD+L++   + Q  E +G+     ++  
Sbjct: 61  SYKE------QYLNFVNGDETLLNQPFIQQTALDHLIAQNLILQQAEKLGISLSDAQIEQ 114

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGM 172
            +A+ P F  ++ +FS  ++ + L   G+  +  I     DH  KML+ T     FV   
Sbjct: 115 MLAQQPSFQ-QNGQFSQTLYENYLRSVGLTSQGLIANLRQDHALKMLNST-----FVDYT 168

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             S + ++Q      E R++    +           S   +  +++K+K++++   +  +
Sbjct: 169 LVSKVDMNQIANLQTEQRTLFLSSIPLDEYKKNIQVSQQDIANYYQKHKNSFKQTAHVDV 228

Query: 233 SYILFDVHE-KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKE 282
            YI+    +   K   +++ ELQ  Y    E       R V+ ++            QK 
Sbjct: 229 DYIVLSPEQVNTKAAPVTDAELQQAYANFVEAQNKNAKREVKHILIATSDTRNENQAQKL 288

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFT 339
           A+E +  ++ G  F Q A +    +   + G   + Y   V   +   ++  L K    +
Sbjct: 289 ANEVYAKIQGGTNFAQAAAQYSDDIDSKTKGGLIESYQTGVYSEAFDKAVLGL-KANQIS 347

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
             +   +GY I     +  +   SF+  K  +A +++ +K +    +    L E +    
Sbjct: 348 QPVKTQYGYHIIQAQTLAQNIP-SFEAEKSRLAAEIQKSKVANLFTDTVNSLNEMVVSSD 406

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           S+D + +  K   I+   V   G + +   V   P  +  +F    K+   +    + L 
Sbjct: 407 SLDVVPQEIKGTRIE--TVKNVGLNTR-HPVLNDPSVKARIFNEDVKNGDRNVTSNLQLA 463

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVK 487
            G  +WV++++  P   + L +    +K
Sbjct: 464 TGEAVWVKVRDYQPEGVQSLAQATPAIK 491


>gi|152990310|ref|YP_001356032.1| peptidyl-prolyl cis-trans isomerase [Nitratiruptor sp. SB155-2]
 gi|151422171|dbj|BAF69675.1| peptidyl-prolyl cis-trans isomerase [Nitratiruptor sp. SB155-2]
          Length = 272

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 18/161 (11%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG------KKFIQL 299
           I++++ E +A Y+KN +K+  PE+     ++  ++KEA +    LKK       +KFI+L
Sbjct: 109 IKVTDKEAKAFYQKNIDKFKRPELVHARHILVKSEKEAQDIINELKKTPKNQLKQKFIEL 168

Query: 300 AEEQ-----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAH 352
           A+ +     GK   D  LG F K  +     +D+ FSL K G FT  PV    FGY I +
Sbjct: 169 AKTKSVGPSGKRGGD--LGFFKKGQMVK-PFSDAAFSL-KPGTFTTKPV-QTQFGYHIIY 223

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           V   KP+ T+ F ++K  I  Q+++ K  E V+++ ++L++
Sbjct: 224 VEEKKPAGTIPFDQIKDRIKAQLKMKKFQEIVQKEAEKLKK 264


>gi|170702053|ref|ZP_02892969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria IOP40-10]
 gi|170133039|gb|EDT01451.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria IOP40-10]
          Length = 644

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/363 (19%), Positives = 144/363 (39%), Gaps = 32/363 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V +V   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D     + +   L+ +G+  ++Y +   
Sbjct: 99  ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L+   +    V           +      + R V  +VL      A   P++A LT +
Sbjct: 159 YSLALQQIPASIVASAFTPKGPAQRLSELAAQQREVQALVLKTGDYAAKVQPTDAQLTAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271
           ++ +K ++  PE   I Y+++         + ++ +++  Y+ N   + S  ++R     
Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTDADIKKFYDDNPTHFRSEAQVRVSHIF 278

Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                              EQL+   +   D+  Q  +K  +    A + G  L  I+ G
Sbjct: 279 IAAASDASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKDSQDAPSAAK-GGDLGFITRG 337

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S +     D    D+ F+L K+GD + V+    G+ I   + +KPS    F +VK  IA 
Sbjct: 338 STAGGKAFD----DAAFAL-KQGDVSGVVQSDLGFHILKATEVKPSVVKPFADVKDHIAV 392

Query: 374 QMR 376
           Q++
Sbjct: 393 QLK 395


>gi|134094954|ref|YP_001100029.1| putative peptidyl-prolyl cis-trans isomerase protein [Herminiimonas
           arsenicoxydans]
 gi|133738857|emb|CAL61904.1| putative peptidyl-prolyl cis-trans isomerase D, ppiD-like
           [Herminiimonas arsenicoxydans]
          Length = 636

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/393 (19%), Positives = 159/393 (40%), Gaps = 21/393 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IR   R  +  + L+++   F   GL         S+TV  V  Q +    +  + 
Sbjct: 1   MFEFIR-THRRLMQFLLLLIILPSFAFVGLESYTSMGDASNTVAKVADQTITQPEWDAAQ 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++    Q  G   +++   +    ++IL+NL++   L    +   L      +   I 
Sbjct: 60  REQMSRFRQMFGDQFDAKMFDTPEAKQEILNNLIAQRVLTAEAKRNKLAVTDQALQQTIV 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
                   D KF  + + + LA +G+    Y     + L+   V           + L  
Sbjct: 120 NMGGLTTADGKFDVERYKAILAAQGMTPTMYEARLRQELTSQQVNAAIQNTAFAPDSLAK 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      + R V  +             ++ +L  ++EK  + +  PE  +  Y++    
Sbjct: 180 RLSELGEQEREVQQLAFKTSDYAGQVKVTDDMLKSYYEK-SNQFNVPEQVKAEYVVLTAD 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------------FQ 288
               +I +S+ ++++ YE+N + Y   E R    ++    K+A +A              
Sbjct: 239 ALAAQINVSDADIKSYYEQNAKHYGVEEQRRASHILIGVNKDASDAEKAAAKAKAEQLLA 298

Query: 289 SLKKG-KKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           +L K  ++F +LA+E     G +     LG F K  +      ++ F L K+G+ + ++ 
Sbjct: 299 TLHKNPQEFAKLAKENSSDTGSAERGGDLGFFGKGMMVK-PFEEAAFKL-KQGELSDLVQ 356

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +G+ I  ++ IKP+   +  EVK +IA+ +R
Sbjct: 357 SDYGFHIIKLTAIKPASIKTLDEVKNEIASDIR 389


>gi|146307082|ref|YP_001187547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
 gi|145575283|gb|ABP84815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
          Length = 615

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/406 (18%), Positives = 172/406 (42%), Gaps = 24/406 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  SR W+AKI + ++ +     G    +   S  +    V    +  +    + 
Sbjct: 1   MLQNIRDNSRGWIAKIIIGLIVMLMAFTGFEAIVTGTSNRNNAAEVNGDTITLNELNTAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   + Q++G   ++       L +  L  L+    L Q   D         +   I 
Sbjct: 61  EMQRRQLLQQLGRDFDASLLDDKLLREASLKGLIERKLLLQAAGDADFAFSQAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D +F    F   + + G +  ++     +ML    ++G    G+  S+ + +
Sbjct: 121 QTPEFQ-VDGRFDAARFDQVIRQMGYSRLQF----RQMLEEEMLIGQLRAGLGASSFVTE 175

Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           Q  R +   E ++ D+  +  +  PA  + +++ +  +++++   + +PE   + Y+  +
Sbjct: 176 QDARAFANLERQTRDFASVTIKADPAAVELADSDVQAYYDEHASEFMSPEQVVLEYV--E 233

Query: 239 VHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-----DEAFQSLK 291
           +H+     +IE+S+D+LQ  YE   E     E R    ++      A     +E    + 
Sbjct: 234 LHKDSFFDQIEVSDDDLQPLYE--SEIANLAEQRQAAHILIEGDDAAARTKIEEIKARVD 291

Query: 292 KGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA    E+ G +     LG ++   + D +  +++++L + G  +  +   FG
Sbjct: 292 AGEDFAALAKEFSEDPGSAADGGDLG-YAGPGVYDPAFEEALYAL-QTGQVSEPVRSDFG 349

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           + +  +  ++     SF  +K  +A   +  +  ++  E  K+LE+
Sbjct: 350 WHLIKLLGVQAPEVPSFDSLKDKLARDFKAQQVEQRFVEATKQLED 395


>gi|94987556|ref|YP_595489.1| parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731805|emb|CAJ55168.1| Parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 629

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 151/696 (21%), Positives = 267/696 (38%), Gaps = 142/696 (20%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV--VSVGRQKVPFSSFIN 58
           ML+ IR  +++W  KI   ++ + F+ WG+     ++SG   V  VSV  Q +       
Sbjct: 1   MLDFIRSNAQSWGVKIAFGLIIIVFIFWGIG----TLSGGPEVEVVSVNGQSITIQELQK 56

Query: 59  SWKQELGMISQKIGFV----VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
             ++    I Q    +    +N+ R + +   + IL+ LV      Q    IGL      
Sbjct: 57  RCEEIEQNIRQNFPTISAAEINTFRIKQLATQQLILETLVL-----QEANRIGLIITPIE 111

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   I   P FH  + KF   +++  L                   R D  G F   +R 
Sbjct: 112 LRKTIESFPAFHNTEGKFDPAIYLQFLKE-----------------RNDTPGHFESQIR- 153

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           +NLL+++ ++   E  +  YI            P+ A     +E           + I Y
Sbjct: 154 TNLLINKIQQ---EITAGAYI-----------SPTEAYDVYMYESAT--------RTIQY 191

Query: 235 ILFDVHEKEKKIEISND-----------------ELQAE--------------------- 256
           +LF   +   K+ IS D                 EL  E                     
Sbjct: 192 LLFPTEDYLNKVNISADEVAKFYNESSEQFKTPTELNLEYLLITPRSLANNQTIDDTTVS 251

Query: 257 --YEKNKEKYFSPE-IRTVEQLVFP-----------NQKEADEAFQSLKKGKKFIQLAE- 301
             Y+K+KE + SPE I     +VF             Q++ ++A  ++KKG+ F  +A+ 
Sbjct: 252 EYYQKHKEDFKSPEQIHAQHIVVFAPENSEPEVLKKAQEKINQAANAIKKGEDFSSVAKK 311

Query: 302 --EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
             +   + +   LG F+ E  +P  + AD  FSL   G+ +  I    GY I  + + KP
Sbjct: 312 FSQDNVAQNGGDLGWFTYEQAVP--AFADVAFSLT-PGEISQPIQTPVGYHIIKLIDKKP 368

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
               SF EV K I  ++   KAS ++++  + ++  L    S+ E  +   +  I   L 
Sbjct: 369 EEIKSFDEVSKTIQQRLAEDKASIELQDVLENVQLALIENKSLTEAGKPYNLSPISTGL- 427

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
            F  KD+  +   A P +   L  V     P +      +    Y+ +++K+  P   + 
Sbjct: 428 -FPIKDIASQLELAKPDELSKLTHV----SPGTILENPLITKTGYVIIKVKDIKPESIKS 482

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS--LLTTNQINR 536
           +E V   +    K  K A E++ KA +  L   K       + KNL  S  ++ +  I  
Sbjct: 483 IEVVENQISSLLKKQK-ANELAMKAAEEQLTILKNSSIPPAVAKNLKTSPAIIRSATIEN 541

Query: 537 MDN----ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----K 587
           + N     + F    G          +   + +E G+  ++  V+   V P +E     K
Sbjct: 542 LKNPQLVPDTFKATPG--------SWLTTPYTVEQGV--LIAYVSKEVVYPSKEQWDNIK 591

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           + F+S + +   + +    +  L+ Q  +T+ +  I
Sbjct: 592 EAFMSAIVKSKREQMFKGFLTMLEKQAKITIKEEKI 627


>gi|325265616|ref|ZP_08132306.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC
           33394]
 gi|324982886|gb|EGC18508.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC
           33394]
          Length = 608

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 150/342 (43%), Gaps = 32/342 (9%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
           V NS+ +      +++   LV  A L +  + +G+     ++   I  +P+FH +  KFS
Sbjct: 57  VRNSQASGGSASREEVFQTLVQRAYLMEGAKALGIAVSDTQIKQGIVDAPIFHDEQGKFS 116

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD-QAKRF---YFEN 189
            + F + L    ++E  ++    + L+   ++ M       SN++   QA+R+       
Sbjct: 117 PERFQTFLKNNHLSESAFMQMERERLTLVSLLQML-----NSNVVTSGQAERYIQTQMAE 171

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           R +   V N  +  A     +A L ++++ +K NY      +  Y++    +   K  +S
Sbjct: 172 RVIRTSVFNPENYAAQVKAGDAELQKYYDAHKSNYAVAPGVKYEYMVVSPKDLVDKQTVS 231

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-------------KF 296
            +E+QA   K       P  R +  ++    K AD A +   + +             KF
Sbjct: 232 AEEVQAAL-KTATTNQKP-TRRIAHIMINAPKSADAATRQKAREQAEKIAQEAKASPDKF 289

Query: 297 IQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            +LA    ++ G + +   LG+ ++  +P   L D+ F LA +G  + V+   FGY I  
Sbjct: 290 AELAKQYSQDTGSAQNGGDLGALTQGSLPAKPLDDAAFKLA-QGAVSDVVETDFGYHIVR 348

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           V  I+ +   + QE +  +  ++++ KA +  ++  + + EF
Sbjct: 349 VLEIQGN-DAAAQEAR--VRQELQLKKAQQAYEKIREEIAEF 387


>gi|70731342|ref|YP_261083.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens
           Pf-5]
 gi|68345641|gb|AAY93247.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens
           Pf-5]
          Length = 623

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 175/408 (42%), Gaps = 24/408 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59
           ML+ IR  S+ W+AK  + V+     + G  DA+F + + +     V  +++  +    +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIVALLALTGF-DAIFKATTHNQDAAKVNGEEITQNELSQA 59

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
              +   + Q++G   ++       L +  L  L+    L Q  +D       G +   I
Sbjct: 60  VDMQRRQLMQQLGKDFDASLLDEKMLREAALKGLIDRKLLLQGAQDSKFAFSEGALDQVI 119

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            ++P F   D KFS + F   + + G    +    + +ML++  ++G    G+  S  + 
Sbjct: 120 LQTPEFQ-VDGKFSPERFDQVIRQLGYTRLQ----FRQMLTQEMLIGQVRAGLAGSGFVT 174

Query: 180 DQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
           D A+   F   E ++ D+  L  +  PA    ++  +  +++++   +  P+   I YI 
Sbjct: 175 D-AQVLAFARLEKQTRDFASLTIKADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYIE 233

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--EA------DEAFQ 288
                   ++ + +++LQA Y+K      S + R    L+  N K  EA      +E   
Sbjct: 234 LKKAAFFDQVSVKDEDLQALYQKEIAN-LSEQRRAAHILIEVNDKVNEAQAKAKIEEIQA 292

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            L KG+ F  LA+E  +     S G    F+   + D +   ++++L K     PV  G 
Sbjct: 293 RLAKGESFEALAKEFSQDPGSASNGGDLGFAGPGVYDPTFEKALYALNKDQVSAPVRTG- 351

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           FG+ +  +  ++     SF  +K  +   ++  +  ++  E  K+LE+
Sbjct: 352 FGFHLIKLLGVEAPEVPSFASLKGKLTRDLKTQQVEQRFVEATKQLED 399


>gi|312961785|ref|ZP_07776283.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens WH6]
 gi|311284044|gb|EFQ62627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens WH6]
          Length = 624

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 91/418 (21%), Positives = 189/418 (45%), Gaps = 43/418 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFIN 58
           ML+ IR  S+ W+AK  + ++       G+ +A+F  SG++   V  V  + +       
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIVALMAFTGI-EAIFQASGTNKQDVAKVNGEAITQPELSQ 59

Query: 59  SWKQELGMISQKIG-----FVVNSERARSVGLDKKILDN--LVSGATLDQFIEDIGL-EA 110
           +   +   + Q++G      +++ +  R   L K ++D   L+ GA   +F    G  EA
Sbjct: 60  AVDMQRRQLMQQLGKDFDASLLDEKLLRDAAL-KGLIDRKLLLQGAADSKF----GFSEA 114

Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
              +V   I ++P F   D KF+ + F   + + G +  ++     +ML++  ++G    
Sbjct: 115 ALDQV---ILQTPEFQ-VDGKFNAERFDQVIRQLGYSRLQF----RQMLTQEMLIGQVRA 166

Query: 171 GMRPSNLLLDQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
           G+  S  + D A+   F   E ++ D+  +N +  PA    ++  +  +++++   +  P
Sbjct: 167 GIAGSGFVTD-AEVLAFARLEKQTRDFATVNLKANPAAVKLTDDEVKAYYDQHAKEFMTP 225

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--EA-- 283
           +   I Y+         ++ + +DELQA YEK      + + R    L+  N K  EA  
Sbjct: 226 DQVVIDYLELKKSSFFDQVTVKDDELQAAYEKETAN-LAEQRRAAHILIEVNDKVTEAQA 284

Query: 284 ----DEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
               +E    L KG+KF  LA+E     G + +   LG F+   + D     ++++L K+
Sbjct: 285 KAKIEEIQARLAKGEKFDALAKEFSQDPGSANNGGDLG-FAGPGVYDPDFETALYAL-KQ 342

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
              +  +  +FG+ +  +  ++     +F  +K  +  +++  +  ++  E  K+LE+
Sbjct: 343 DQVSAPVRSTFGWHLIKLLGVEAPEVPTFASLKDKLTRELKAQQVEQRFVEATKQLED 400


>gi|53723660|ref|YP_103105.1| peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei ATCC
           23344]
 gi|67642012|ref|ZP_00440775.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia mallei GB8
           horse 4]
 gi|254177616|ref|ZP_04884271.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           ATCC 10399]
 gi|254200054|ref|ZP_04906420.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           FMH]
 gi|254206388|ref|ZP_04912740.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           JHU]
 gi|52427083|gb|AAU47676.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia mallei
           ATCC 23344]
 gi|147749650|gb|EDK56724.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           FMH]
 gi|147753831|gb|EDK60896.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           JHU]
 gi|160698655|gb|EDP88625.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           ATCC 10399]
 gi|238523056|gb|EEP86497.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia mallei GB8
           horse 4]
          Length = 644

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/407 (18%), Positives = 157/407 (38%), Gaps = 43/407 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +   FL+++ +P L I G+         S+ V +V   K+  + F  +
Sbjct: 1   MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q++    Q +G   +++   +    +++LD L+    L    + + L    G V   +
Sbjct: 59  LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSTSDGAVRQTL 118

Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D  F  + +   LA +G+   +Y +     L+   +    V       
Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +  +      + R V  +VL +    A   P++A ++ +++ +K  +   E   I Y++
Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273
           +         + S+ +++  Y+ N   Y +  ++R                        E
Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAE 298

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329
           QL+   +   D          +F Q+AE+  +     +    LG  ++      +  D  
Sbjct: 299 QLLAEVKAHPD----------RFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
               KK + + V+ G FG+ I   +++KP+      EVK  IA  +R
Sbjct: 349 AFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLR 395


>gi|298368785|ref|ZP_06980103.1| peptidyl-prolyl cis-trans isomerase [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282788|gb|EFI24275.1| peptidyl-prolyl cis-trans isomerase [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 610

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 110/518 (21%), Positives = 208/518 (40%), Gaps = 64/518 (12%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A+I L ++ + F+ +G+S    +   S  +V VG QK+           +L +  Q I  
Sbjct: 12  AQILLGLIALTFVGFGVS--TVANPDSDYIVKVGNQKI--------SDHDLNLAMQNIQ- 60

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
               E+ R       +  +L+  A L Q  + +G+     ++   I   P FH  + KFS
Sbjct: 61  ASGGEQPRDA-----VFQSLLQRAYLTQGAKQMGIAVSQEQIKQIIVDDPSFHDANGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
             +    L +  ++E ++++         ++  +   G   S++   Q        R+V 
Sbjct: 116 QALLTQYLNQRRMSEDQFVEEIRDQFLFQNLQNLVQNGTIVSDVQAAQLVNIAQATRTVR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
            +  N           +A+L ++++  K +Y  P+  +I  +         K  +S+ EL
Sbjct: 176 SVTFNPEAFAGQIKVDDAILQRYYDANKKDYIIPQAVKIELVALTTQALADKQTVSDAEL 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ-----------SLKKGKK--FIQLA 300
           +  ++K       P  R +  ++FP  ++A    +           ++ K K   F  LA
Sbjct: 236 RQAFDK------LPPRREIAHILFPVAQDASAEERAAAKAEAEKVLAMVKAKPSDFPALA 289

Query: 301 EEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           ++  K  +  S    LG   K+        ++ FS+ +KG+ + V+  ++GY I  + NI
Sbjct: 290 KQYSKDPASASNGGNLGFMPKDGGLGAEFENAAFSM-QKGEISNVVQTAYGYHIIKILNI 348

Query: 357 --KPSF---TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
             KP F       ++  K          A EK+ E         A   + + ++   K +
Sbjct: 349 QDKPVFEQEKAELEKELKLKKAAAGFNAAKEKLGE---------AAFNNPNSLAEAAKAL 399

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT---VALPDGSYMWVQI 468
            +++ L D       G   AA    ++L+  VF  DD L K H    + + D +   V++
Sbjct: 400 GLEVKLSDEWLTKANG---AAAGMPQELINAVFS-DDVLKKKHNSEPITINDNTVWVVRV 455

Query: 469 KESIPARDRKLEEVLTDVKKDW---KTVKTAEEVSSKA 503
           KE    R     EV  DV+  +   + VK AE+ +  A
Sbjct: 456 KEVREERTAPFAEVKDDVRAAYLRSEAVKLAEKKARAA 493


>gi|295698384|ref|YP_003603039.1| ppic-type ppiase domain protein [Candidatus Riesia pediculicola
           USDA]
 gi|291157251|gb|ADD79696.1| ppic-type ppiase domain protein [Candidatus Riesia pediculicola
           USDA]
          Length = 622

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 148/315 (46%), Gaps = 19/315 (6%)

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           ++L+ L+    L Q+   +G++    ++  EI    +F  ++ KF    + S L R  I+
Sbjct: 80  QVLNKLIQETLLSQYSMKLGIKVSEDKIKEEIRNLSIFQ-ENGKFDKRKYKSFLLRNQIS 138

Query: 148 EKEYIDHYTK-MLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
            K       K  L++  +   F+   + PS  L  +  +F F+ R +  + L       +
Sbjct: 139 GKTLSQEIKKNFLTKKVMQSYFLDEFLLPSESL--EYAKFMFQKRKIQTLTLPILQYQKL 196

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
            + S   +  +++ Y D + +    RISYI  D+  + + + +  +E +  Y+KNK+ + 
Sbjct: 197 QNVSEEEMEAYYQNYPDQFLSSRKARISYIKLDIESQYENLNLKEEEFEF-YKKNKKFFT 255

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG----KSLSDISLGSFSKEYIP 321
           +P       +   + K+A+   + L +G  F +LA++       +  + S+G   KE++P
Sbjct: 256 NPPKNYYSMIQLDSIKDAELMIEKLSQGFSFEELAKKFSTDPFSAKKNGSIGWIEKEFLP 315

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS-NIKPSFTVSFQEVKKDIANQMRITKA 380
            V ++    +L K G  + +I     Y+I  +  +I  S+  +F E K +I + +  +K+
Sbjct: 316 QVIVSA---NLKKIGQISKIIEFEGKYLIFRLDRSINKSYK-TFLESKSEIHDILLKSKS 371

Query: 381 SEKVKEDYKRLEEFL 395
           SEK    + ++ EF+
Sbjct: 372 SEK----FYKIREFI 382


>gi|251794480|ref|YP_003009211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
 gi|247542106|gb|ACS99124.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
          Length = 392

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 79/144 (54%), Gaps = 6/144 (4%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           E ++++++D+++A Y+ NK    +PE      ++   ++EA++  + LK G  F  LA+E
Sbjct: 200 EPQVKVTDDDIKAYYDANKASMSTPEQIRASHILVATKEEAEDILKQLKAGADFATLAKE 259

Query: 303 Q----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +    G   +   L  F K  + + +  D+ F+L KKG+ + V+  S+GY I   ++ K 
Sbjct: 260 KSTDTGTKDNGGDLNFFGKGSM-EPAFEDAAFAL-KKGELSGVVQTSYGYHIIKKTDEKA 317

Query: 359 SFTVSFQEVKKDIANQMRITKASE 382
           + T + +E K+DI  Q+   K SE
Sbjct: 318 AVTPTLEEKKEDIKYQLVTQKVSE 341


>gi|85858466|ref|YP_460668.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB]
 gi|85721557|gb|ABC76500.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB]
          Length = 533

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 90/491 (18%), Positives = 204/491 (41%), Gaps = 34/491 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE++RK ++ W+ K  L ++ V F+ +  +        S TV  V  +++  +     +
Sbjct: 1   MLELMRKHAKNWLMKFLLGMIIVVFIFYFGTRT--GKEKSETVAIVDGKEIALAEVQKEY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                   ++ G  +  E  + + L +  LD+L++ A + Q   ++ L A    V   I 
Sbjct: 59  SNLAEFYRRQYGGSLTDEMLKGLELKQNALDSLIAQAIIMQKAGELNLTATDDEVRNFIM 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  +D  F+  ++   L    +  +E+     +MLS   +  +    ++ S+  + 
Sbjct: 119 AYPAFQ-RDGTFNEKIYQQMLRLNRMTPEEFEASQQRMLSAAKLEQLIQEAVKVSDQEVF 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               F  E   + Y++           PS   L  + +++ + +R PE  +I  + F   
Sbjct: 178 DFFSFQNEQIKISYLMFKPADFKGAISPSRKDLETYLKEHGNEFRVPEQMQIKALFFPGR 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYF-----SPEIRTVEQLVFPN----------QKEADE 285
           +   K +I   ++   YE+++ ++      +P ++ V+  +              ++A +
Sbjct: 238 DFAGKADIPESDIVDYYERHRSEFAQKGGKAPSLKEVKPRIINELAKISGMAAAAEQAKK 297

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPV 341
           A  ++ + + F   A +   +L  ++   F+   IP     VS    I +  KK + + V
Sbjct: 298 AHDTIYQEENFDSYAAQN--NLKTVTTDFFTLNNIPQPFSKVSDFSKIVADLKKDEISKV 355

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +    GY    V + K S+    +++++++A +    +A  + ++        L  G S+
Sbjct: 356 LSDEEGYFFIKVGSRKSSYIPELKDIEQEVAKRYTEMEARNRCRKAADAALGRLKKGESL 415

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF--GKDDPLSKDHTVALP 459
             I++  K+   +      +G    G  +  +   +QL   ++   + +P   D T+ + 
Sbjct: 416 VRIAQENKLAPAE------SGFFKPGAAIPGLDANQQLSMALYQLSESNPFP-DQTLEIN 468

Query: 460 DGSYMWVQIKE 470
           +G +  +Q KE
Sbjct: 469 NG-FAIIQFKE 478


>gi|134277039|ref|ZP_01763754.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           305]
 gi|134250689|gb|EBA50768.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           305]
          Length = 644

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/406 (18%), Positives = 157/406 (38%), Gaps = 43/406 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +   FL+++ +P L I G+         S+ V +V   K+  + F  +
Sbjct: 1   MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   +
Sbjct: 59  LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118

Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D  F  + +   LA +G+   +Y +     L+   +    V       
Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +  +      + R V  +VL +    A   P++A ++ +++ +K  +   E   I Y++
Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273
           +         + S+ +++  Y+ N   Y +  ++R                        E
Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAE 298

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329
           QL+   +   D          +F Q+AE+  +     +    LG  ++      +  D  
Sbjct: 299 QLLAEVKAHPD----------RFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
               KK + + V+ G FG+ I   +++KP+      EVK  IA  +
Sbjct: 349 AFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDL 394


>gi|332970309|gb|EGK09301.1| peptidyl-prolyl cis-trans isomerase [Kingella kingae ATCC 23330]
          Length = 610

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 164/366 (44%), Gaps = 45/366 (12%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           A++ L  + + F+ +GL++  F +S     +V VG Q      +I     E+        
Sbjct: 12  AQLLLGAIGISFIGFGLAN--FDISTDKNYIVRVGDQ------YITRDALEIA------- 56

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            + NSE++  V    ++   L++ A L +  + +G+     ++   +  +P FH  + KF
Sbjct: 57  -IRNSEQSGGVADRNQVFQILLNRAYLQEGAKRLGIVVSDAQIKQAVVDTPEFHDANGKF 115

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY---FEN 189
               F + L +  ++E++++    + L+ T ++     G     +  +QA +F    F  
Sbjct: 116 DPAKFQAFLQQTHLSEEQFMAQERERLTLTVLLNTLNQG----TVSDEQAMQFVNARFAE 171

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           R++   V N  +        +A L ++++  K  Y   +  +  YI+    +   K  +S
Sbjct: 172 RTIRTSVFNPENYAKDVKIDDASLQKFYDANKQTYALQQGVKYDYIVLSPKDLLDKQTVS 231

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-------------KF 296
           + E+QA   K+ +    P  R +  ++    K ADEA +S  K +             KF
Sbjct: 232 DAEVQAAL-KDAQANAKP-TRKIAHILIEAPKSADEATRSKAKAQAEQVAKEAQAAPEKF 289

Query: 297 IQLA----EEQGKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
             LA    ++ G + S   LG+F+K+  +P  +L ++ F L  +G+ + V+   FGY I 
Sbjct: 290 ADLAKQYSQDAGSAQSGGELGNFAKDGSLPAPALEEAAFKLG-EGEVSGVVETDFGYHIV 348

Query: 352 HVSNIK 357
            V++I+
Sbjct: 349 RVTDIQ 354


>gi|87200036|ref|YP_497293.1| hypothetical protein Saro_2020 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135717|gb|ABD26459.1| hypothetical protein Saro_2020 [Novosphingobium aromaticivorans DSM
           12444]
          Length = 646

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 24/232 (10%)

Query: 96  GATLDQFIEDIGLE------------ADHGRVWG----------EIARSPLFHGKDNKFS 133
           G T+ QF++  GLE            A+ G+  G          EI +   F G D KFS
Sbjct: 78  GLTMKQFLDGGGLEGVLSGMIDRLALAEWGKKHGLAVSDRLVDSEIVKIGAFQGPDGKFS 137

Query: 134 HDVFVSRLAREGINEKEYIDHYTK-MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
              +   LA+ G+ +KE  +   + +++R  ++    G   P+  +L  A     E R  
Sbjct: 138 QKAYEQLLAQRGLTDKEVRNDLAQGLMARQLLLPAAFGAQMPAEAVLRYAS-LLTEKRVG 196

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
             I + +        P +  L  ++   K  Y  PE + I Y L D    +     ++ E
Sbjct: 197 TIISVPSLAFAPAGGPDDNALAAFYNANKGRYMQPERRTIRYALVDEATLKNVPAPTDAE 256

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           +   Y+ N   Y   E R+V Q++ P +  A      + KG      A  +G
Sbjct: 257 IANRYKLNTAVYAPSEQRSVTQVIVPTEAAARALAAEVGKGGALDTAARSKG 308


>gi|254230430|ref|ZP_04923809.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sp. Ex25]
 gi|151937031|gb|EDN55910.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sp. Ex25]
          Length = 273

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/263 (19%), Positives = 124/263 (47%), Gaps = 15/263 (5%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINSWKQELGMISQ 69
           +   KI L ++ + F+  G+    + VSG++ +   VG  ++P   F  +++ E   +  
Sbjct: 2   SIAVKIILGLIILSFVFAGVGS--YIVSGNNNSAAKVGNTEIPRGEFEMAYQNERNRMQA 59

Query: 70  KIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V   I   P F 
Sbjct: 60  QLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVRSMILDMPQFQ 119

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD---QAK 183
             + +F  +++ + L R G +     D + + + R  V    +  ++ S  +L    QA+
Sbjct: 120 S-NGQFDQEIYQASLRRAGFSP----DSFAEYMRRELVREQLLNALQNSEFILPGEVQAE 174

Query: 184 -RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
            + + + R +  I ++        + ++  + Q+++   DN+  PE  +++YI       
Sbjct: 175 GKLFTQTRDIRTIKIDLAEFAKNIELTDEEIQQYYKANPDNFTRPEQVKVAYIELSAEAL 234

Query: 243 EKKIEISNDELQAEYEKNKEKYF 265
           ++++ +S+ E++  Y+++ ++ F
Sbjct: 235 KEQVNVSDAEVKKYYDEHLKQIF 257


>gi|327480677|gb|AEA83987.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri DSM
           4166]
          Length = 618

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 103/547 (18%), Positives = 234/547 (42%), Gaps = 62/547 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVPFSSFINS 59
           ML+ IR  S+ W+AK  + V+ V   + G  DA+F+ + ++     V  +++       +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIVVLLALTGF-DAIFNAASNAQNAAEVNGEEISRYDLDQA 59

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG-- 117
              +   ++Q++G   +        LD ++L +   G+ +D+ +    L+A  G  +   
Sbjct: 60  MNMQRRQLAQQLGQDFDPSL-----LDDRLLRDAALGSLIDRMLL---LQAAKGANFAFS 111

Query: 118 ------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
                  I ++P F   D  F+   F   + + G +       + ++L +  ++G    G
Sbjct: 112 REALDQLILQTPEFQ-VDGAFNPARFDQVIQQMGYSRL----QFRQLLEQEMLIGQLRAG 166

Query: 172 MRPSNLLLDQAKRFY--FENRSVDYIVLNNRHVPAIADP---SNAVLTQWFEKYKDNYRA 226
           +  +  + DQ  + +   E ++ D+  L    VPA  +    S+  + +++E   D +R 
Sbjct: 167 ISGTGFVTDQQVQNFARLEMQTRDFATLT---VPAQHEAIEVSDDQINEFYEANADRFRT 223

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA--- 283
           PE   + Y+         ++E S++ELQ  Y+K        E R    ++     E    
Sbjct: 224 PEQVVVEYVELKKESFFDQVEASDEELQELYQKQIANL--AEQRRAAHILIETGGELSDD 281

Query: 284 ------DEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAK 334
                 DE    +K G+ F  +A+E  +     + G    F+   + D +  D++++L  
Sbjct: 282 EAKAKIDEIAARVKNGEDFATVAKEVSQDPGSANEGGDLGFAGPGVYDPAFEDALYAL-N 340

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +G+ +  +   FG+ I  +  ++     SF+ +K ++  +++  +  ++  E  K+LE+ 
Sbjct: 341 EGEVSAPVKSEFGWHIIKLLGVQSPEVPSFESMKPELVRELKAQQVEQRFVETSKQLED- 399

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDP 449
                   ++++  + + + +   +  G++        ++V    + E++L  V G    
Sbjct: 400 --AAFEASDLAQPAQELGLMVQTTEAFGREGGEGITANRQVIQAAFSEEVL--VDG---- 451

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
            +    + L   + + +++KE +      L +V  D+ +  +    AE   ++  QL+ E
Sbjct: 452 -ANSSVIELDPDTAVVIRVKEHLKPAAIPLADVRDDIVQQLQRKLAAETARTQGEQLLAE 510

Query: 510 YSKEGKN 516
             +EGK 
Sbjct: 511 L-REGKQ 516


>gi|221198210|ref|ZP_03571256.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD2M]
 gi|221209208|ref|ZP_03582200.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD2]
 gi|221170946|gb|EEE03401.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD2]
 gi|221182142|gb|EEE14543.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD2M]
          Length = 644

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 69/363 (19%), Positives = 148/363 (40%), Gaps = 32/363 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V +V   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAVNGHKITRVEFDGAFRQQIDQARQALGAQFDIKAFDTPDHRKQVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D     + +   ++ +G+  ++Y +   
Sbjct: 99  ADETQRLHLTASDNAVREALLSDPMIASLKKPDGSIDVERYAQLMSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L+   +    V        L  +      + R V  +VL      +   P++A L  +
Sbjct: 159 YSLALQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDYASKVQPTDAQLAAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           ++ +K  +  PE   I Y+++         + ++ +++  Y+ N   +F  E +     +
Sbjct: 219 YDAHKQQFATPETATIEYLVYSPAAAAASAQPTDADIKKFYDDNP-THFRTEAQVRVSHI 277

Query: 277 F-------------PNQKEADEAFQSLK-KGKKFIQLAEE---------QGKSLSDISLG 313
           F               + +A++    +K +  +F Q+AE+         +G  L  I+ G
Sbjct: 278 FIAAASDASAADKAAAKAKAEQLLADVKARPDQFAQIAEKNSQDAPSAAKGGDLGFITRG 337

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S +     D    D+ F+L K+G+ + V+    G+ I   +++KPS    F EVK +IA 
Sbjct: 338 STAGGKAFD----DAAFAL-KQGEISGVVQSDLGFHILKATDVKPSIVKPFAEVKDEIAA 392

Query: 374 QMR 376
            ++
Sbjct: 393 TLK 395


>gi|325518979|gb|EGC98507.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           TJI49]
          Length = 644

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 72/369 (19%), Positives = 146/369 (39%), Gaps = 32/369 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V +V   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKAFDTPDHRKQVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D     + +   L+ +G+  ++Y +   
Sbjct: 99  ADETQRLHLTASDNAVREALLSDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L+   +    V        L         + R V  +VL      A   P++A L  +
Sbjct: 159 YSLALQQIPASIVSSAFTPKSLAQHLSELAAQQREVQALVLKTSDYAAKVQPTDAQLAAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271
           ++ +K ++  PE   I Y+++         + ++ +++  Y+ N   + +  ++R     
Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTDADVKKFYDDNPTHFRTEAQVRVSHIF 278

Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                              EQL+   +   D+  Q  +K  +    A + G  L  I+ G
Sbjct: 279 IAAASDASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKNSQDAPSAAK-GGDLGFITRG 337

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S +     D    D+ F+L K+G+ + V+    G+ I   + +KPS    F EVK +IA 
Sbjct: 338 STAGGKAFD----DAAFAL-KQGEVSGVVQSDLGFHILKATEVKPSAVKPFAEVKDEIAA 392

Query: 374 QMRITKASE 382
            ++   AS+
Sbjct: 393 SLKQQYASK 401


>gi|71276515|ref|ZP_00652790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Dixon]
 gi|71901997|ref|ZP_00684044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
 gi|170729736|ref|YP_001775169.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12]
 gi|71162692|gb|EAO12419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Dixon]
 gi|71728242|gb|EAO30426.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
 gi|167964529|gb|ACA11539.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12]
          Length = 655

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 143/685 (20%), Positives = 273/685 (39%), Gaps = 100/685 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI--------WGLSDALFSVSGSST---------V 43
           ML+ +R+ +  W+A   + +L +PFL          G  D +  +  S T          
Sbjct: 1   MLQKLREKTSGWIATAIIGLLVIPFLFVIDVRYIGGGGKDDVAQLQASPTWWKSAPAFWP 60

Query: 44  VSV--GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
           +S+   RQ +    F + + Q       + G   ++    ++    K+LD L+    +  
Sbjct: 61  ISLLWQRQGISKQEFQSRFDQARLQQRAQQGEGFDAREFETLNNKLKLLDQLIEEHVMRL 120

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLS 160
             E  G+      V   IA    F  K  KF+ D +   LA+E  +   +  ++Y + + 
Sbjct: 121 VAEGAGVVISDDAVRSIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYENYVRSMM 179

Query: 161 RTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI----ADPSNAVLT 214
           +  ++   +F  G  P N  L++      + R+ + + L     PA+    A+ SN  + 
Sbjct: 180 QLSMIPSTIFDSGFVP-NTELERILALLGQTRNAELVTL-----PALKLDMAEISNMQIK 233

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           +W+  ++D++R PE     Y+  D     +    S   L+  Y+  +      E R    
Sbjct: 234 EWYAAHRDDFRQPETLSFEYVDLDAAHLPRPTP-SEAVLRKRYDAQQRGEAQNEQRKAAH 292

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI----SLGSFSKEYIPDVS------ 324
           ++     +A     +  K  K ++ A + G   + +    S    SK+   D+       
Sbjct: 293 ILITAGADAASQKVAEAKAAKLVEEARKPGADFAALARINSQDPGSKDAGGDLGWVQRGM 352

Query: 325 ----LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 D++F++ K G+    I   FG  +  +  IK +  + F+ V+  +        A
Sbjct: 353 MVKPFEDALFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQL--------A 403

Query: 381 SEKVKEDYKRLEEFL-ALGTSMDEISRREKIVS-----IDLPLVDFAG---KDVKGKEVA 431
           +E+ KED  +  EF    G  MD + +    +S     + LPL        +D  G  +A
Sbjct: 404 AEQTKEDLDK--EFNDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSRRDAVG--IA 459

Query: 432 AIPYKEQLLFR----VFGK-DDP--LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
           A P  +++LF       GK  DP  ++ +H+V L     +    ++ +P  D+  E+V+ 
Sbjct: 460 ANPAVQRVLFNHDFIQEGKVSDPIQINPNHSVVL---RVIAHTTEQQLPL-DKVREQVVA 515

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
            V+ D    +  ++ +S A+ LV    K G    ++ K   A  L    +  +    +  
Sbjct: 516 AVRAD----RADKDGASAADALVARLQK-GDTLEEVAK---AEKLQITPLTGLQRTAQVP 567

Query: 545 GYDGISQVFSG--PVE---MVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYL 594
            +     +FS   PV     V    +++G  Y VF VT    G     P ++K      L
Sbjct: 568 AFAATRAIFSALSPVAGKPTVGKVRLDDG-RYAVFTVTRVIPGDLTKLPEEQKAMLRQQL 626

Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVH 619
            Q+     + + +  ++ ++ VT+H
Sbjct: 627 DQIEGTLAVHAYVDMMRKRFKVTIH 651


>gi|146282422|ref|YP_001172575.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri A1501]
 gi|145570627|gb|ABP79733.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri A1501]
          Length = 618

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 103/547 (18%), Positives = 234/547 (42%), Gaps = 62/547 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVPFSSFINS 59
           ML+ IR  S+ W+AK  + V+ V   + G  DA+F+ + ++     V  +++       +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIVVLLALTGF-DAIFNAASNAQNAAEVNGEEISRYDLDQA 59

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG-- 117
              +   ++Q++G   +        LD ++L +   G+ +D+ +    L+A  G  +   
Sbjct: 60  MNMQRRQLAQQLGQDFDPSL-----LDDRLLRDAALGSLIDRMLL---LQAAKGANFAFS 111

Query: 118 ------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
                  I ++P F   D  F+   F   + + G +       + ++L +  ++G    G
Sbjct: 112 REALDQLILQTPEFQ-VDGAFNPARFDQVIQQMGYSRL----QFRQLLEQEMLIGQLRAG 166

Query: 172 MRPSNLLLDQAKRFY--FENRSVDYIVLNNRHVPAIADP---SNAVLTQWFEKYKDNYRA 226
           +  +  + DQ  + +   E ++ D+  L    VPA  +    S+  + +++E   D +R 
Sbjct: 167 ISGTGFVTDQQVQNFARLEMQTRDFATLT---VPAQHEAIEVSDEQINEFYEANADRFRT 223

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA--- 283
           PE   + Y+         ++E S++ELQ  Y+K        E R    ++     E    
Sbjct: 224 PEQVVVEYVELKKESFFDQVEASDEELQELYQKQIANL--AEQRRAAHILIETGGELSDD 281

Query: 284 ------DEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAK 334
                 DE    +K G+ F  +A+E  +     + G    F+   + D +  D++++L  
Sbjct: 282 EAKAKIDEIAARVKNGEDFATVAKEVSQDPGSANEGGDLGFAGPGVYDPAFEDALYAL-N 340

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +G+ +  +   FG+ I  +  ++     SF+ +K ++  +++  +  ++  E  K+LE+ 
Sbjct: 341 EGEVSAPVKSEFGWHIIKLLGVQSPEVPSFESMKPELVRELKAQQVEQRFVETSKQLED- 399

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDP 449
                   ++++  + + + +   +  G++        ++V    + E++L  V G    
Sbjct: 400 --AAFEASDLAQPAQELGLMVQTTEAFGREGGEGITANRQVIQAAFSEEVL--VDG---- 451

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
            +    + L   + + +++KE +      L +V  D+ +  +    AE   ++  QL+ E
Sbjct: 452 -ANSSVIELDPDTAVVIRVKEHLKPAAIPLADVRDDIVQQLQRKLAAETARTQGEQLLAE 510

Query: 510 YSKEGKN 516
             +EGK 
Sbjct: 511 L-REGKQ 516


>gi|307721593|ref|YP_003892733.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979686|gb|ADN09721.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 276

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 18/174 (10%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           YK  Y+  E +    +   V +K+    I+ISN EL+  Y KNKE++   E      ++ 
Sbjct: 88  YKSEYKKLEQRMKKELAIQVWQKKLLDSIKISNKELKDYYNKNKEEFNEKESVHARHILV 147

Query: 278 PNQKEADEAFQSLKK------GKKFIQLAEEQGKSLSDIS---LGSFSK-EYIPDVSLAD 327
             + EA +    LK        +KFI+LA+++    S      LG FSK + +P  +  D
Sbjct: 148 KAEDEAKKIIAQLKSLSGEKLKEKFIELAKKESTGPSGPKGGDLGYFSKGQMVP--AFND 205

Query: 328 SIFSLAKKGDFT--PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
            +FS+ KKG+ T  PV    FGY + +V + KPS T SF EVK  I  ++++ K
Sbjct: 206 KVFSM-KKGEVTLKPV-KTQFGYHVIYVEDKKPSMTRSFDEVKAFIEQRLKMEK 257


>gi|293608199|ref|ZP_06690502.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828772|gb|EFF87134.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 621

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 109/523 (20%), Positives = 202/523 (38%), Gaps = 71/523 (13%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFIN 58
           +E  R   + W+ K+ L++   P  + G+       + +    +V  Q++      +   
Sbjct: 1   MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           S+K+      Q +  V   E   ++  +  K LD LVS   L Q  E +G+     ++  
Sbjct: 61  SYKE------QYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQ 114

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGM 172
            +A+ P    ++ +FS  ++ + L   G+  +  I     DH  KML+ T     F    
Sbjct: 115 MLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTST-----FADYS 168

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             S + L Q      E R++    +           SN   T ++ K+++ ++      +
Sbjct: 169 LVSKVDLMQIANLQTEQRTLHLASIKLDAYKTGLTASNQEATDYYNKHQNEFKQQASVDV 228

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEAD 284
            Y++       K    +  ELQ  Y K  E       RTV+ ++           QK A 
Sbjct: 229 DYVVLSPSMMTKPAPATEAELQQAYAKFVETQKKDAKRTVKHILITTDARDDAAAQKLAK 288

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPV 341
           E +  ++ G  F Q A +  +  S  + G   + Y   V   +   ++ SL K G  +  
Sbjct: 289 EVYAKIQGGLSFAQAASQFSEDPSSKAKGGLVEAYASGVFSDAFDKTVLSL-KNGQVSQP 347

Query: 342 IHGSFGYVIAHV---SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
           +   +GY I      +N  PSF           A + R+T   EK K         +A  
Sbjct: 348 VKTQYGYHIIEAETQANQIPSFE----------AEKARLTAEVEKNK---------VATV 388

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI---------PY--KEQLLFRVFG-- 445
            S    S  E IV  D   ++   ++VKG +V ++         PY     +  ++F   
Sbjct: 389 YSDAVNSLNETIVGND--SLEAVVQEVKGAKVESLNGVTLATQNPYLSDPSVKIKLFNDD 446

Query: 446 -KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
            K+   +    + L +G  +WV++++   A  + L + + + K
Sbjct: 447 VKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEAK 489


>gi|325927445|ref|ZP_08188692.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans
           91-118]
 gi|325542195|gb|EGD13690.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans
           91-118]
          Length = 656

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 159/423 (37%), Gaps = 66/423 (15%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L +PFL + + ++     G++ V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100
              L     +I    F    E+AR     ++                 +LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158
              ED G+      V   IA  P F   D KFS D + + LA +G   +     D   + 
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177

Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVL 213
             +  V+   V   G   +    ++  +   E R V+  +L     P  AD    S+A +
Sbjct: 178 SLQQSVIPQAVAESGFA-TKSEFERLLKLMGETRDVELAMLP----PPAADTAPVSDAQI 232

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
            QW++ +  ++R PE   I Y+  +              L+  YE  K ++  PE R   
Sbjct: 233 KQWYDGHAQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLAS 292

Query: 274 QLVFP----------------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
            ++                         Q  AD  F +L K       +++ G  L  + 
Sbjct: 293 HILISAGADAAAQKAAEAKAAKLAAEAKQPGAD--FAALAKANSQDPGSKDAGGDLGWVE 350

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
            G+  K +       D++FS+ K G+    I   FGY +  +  +K     SF++V+  +
Sbjct: 351 KGTMVKPF------EDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQL 403

Query: 372 ANQ 374
           A +
Sbjct: 404 AAE 406


>gi|254514389|ref|ZP_05126450.1| peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium
           NOR5-3]
 gi|219676632|gb|EED32997.1| peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium
           NOR5-3]
          Length = 622

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 178/409 (43%), Gaps = 33/409 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-GRQKVPFSSFINS 59
           ML+ IR  ++  VAK+ + ++ + F I+G+   LFS  GS+ V  V G +  PF     +
Sbjct: 1   MLQDIRANAQGTVAKVIIGLIVISFSIFGIESLLFS-GGSNGVAEVNGEEISPF-----A 54

Query: 60  WKQELGMISQKIGFVVNSERARSVGLD-----KKILDNLVSGATLDQFIEDIGLEADHGR 114
            +QEL  + Q+    +  E A    LD     ++ L+ L+    + Q  +D+GL      
Sbjct: 55  LQQELS-VQQRRLLSILGEDADPALLDQAQMSQQALETLIQREIIKQAAKDMGLNTSDQA 113

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   +     F   D +FS D+F   LA  G         + + L+    +G    G+  
Sbjct: 114 IADIVGSMEQFQ-IDGQFSPDLFQGALASAGFTPA----LFRERLAEDVEIGQLRAGVAG 168

Query: 175 SNLL----LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
           S+      LD A     E R V YI L      A  + S+  +  ++++  + +++ E  
Sbjct: 169 SDFSTEAELDLAASIALEGRDVRYISLPLLDFIASVELSDEAVETFYQQNPERFQSEESV 228

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE----A 286
            + Y+   +    K ++      + E  ++ E   S E R    L+  +  +  E    A
Sbjct: 229 ILEYLELGIDAYRKDVDEERLREEFELVRD-EFELSAEARVSHILIEGSDADRAERIAAA 287

Query: 287 FQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            ++L +G  F   A E     G +     LG  + +  P+ ++ ++I +L   G+ +  +
Sbjct: 288 QKALSEGMSFADAAAEFSDDIGSAQDGGDLGYTAGDTFPE-AMEEAIAALG-VGEQSAAV 345

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
               G  +  V++ +   +VSF++V  ++ ++++   A+  +  D +RL
Sbjct: 346 ETEAGTHLLLVTDRREGSSVSFEDVAAELEDRIQSRDAAADLLVDVERL 394


>gi|78046641|ref|YP_362816.1| peptidylprolyl isomerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035071|emb|CAJ22716.1| peptidylprolyl isomerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 656

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 159/423 (37%), Gaps = 66/423 (15%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L +PFL + + ++     G++ V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100
              L     +I    F    E+AR     ++                 +LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158
              ED G+      V   IA  P F   D KFS D + + LA +G   +     D   + 
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177

Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVL 213
             +  V+   V   G   +    ++  +   E R V+  +L     P  AD    S+A +
Sbjct: 178 SLQQSVIPQAVAESGFA-TKSEFERLLKLMGETRDVELAMLP----PPAADTAPVSDAQI 232

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
            QW++ +  ++R PE   I Y+  +              L+  YE  K ++  PE R   
Sbjct: 233 KQWYDGHAQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLAS 292

Query: 274 QLVFP----------------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
            ++                         Q  AD  F +L K       +++ G  L  + 
Sbjct: 293 HILISAGADAAAQKAAEAKAAKLAAEAKQPGAD--FAALAKANSQDPGSKDAGGDLGWVE 350

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
            G+  K +       D++FS+ K G+    I   FGY +  +  +K     SF++V+  +
Sbjct: 351 KGAMVKPF------EDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQL 403

Query: 372 ANQ 374
           A +
Sbjct: 404 AAE 406


>gi|121997400|ref|YP_001002187.1| hypothetical protein Hhal_0599 [Halorhodospira halophila SL1]
 gi|121588805|gb|ABM61385.1| conserved hypothetical protein [Halorhodospira halophila SL1]
          Length = 524

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 86/435 (19%), Positives = 180/435 (41%), Gaps = 44/435 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR   + W+A + +  + +PF+  G  +        + V  V  +++P S    + 
Sbjct: 1   MLQAIRDGIKGWIAWVIIGFIALPFIFMGGYEYFGGGQDDAVVARVDGEEIPRSQIDQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + +  G  +         L ++ L+ L+    L  ++   GL      V   I 
Sbjct: 61  ERQRAQLREMFGGDLPDGAFDGAALRREALEQLIDEQLLHAYVGKQGLRVTDQEVAQTIR 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV------VGMFVGGMR- 173
              +FH +  +FS   + + L R  +  ++Y     + L R D+        +F   +  
Sbjct: 121 GQEIFH-EGGQFSRARYQTLLERNRLTPEDY-----EGLVRRDLKADQFQQAVFASSIST 174

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLN-NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
           PS   L++  R   E+RS  Y+ ++ +R+   ++   +A +   +E + D+Y APE  R+
Sbjct: 175 PSQ--LERLVRLQDESRSFSYVEIDADRYTDEVS-VDDAEVEAHYEAHTDDYMAPEAVRL 231

Query: 233 SYILFDVHEKEKKIEISNDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
            Y+         ++++ ++ LQ  Y E+  +    P    V + +  +        + ++
Sbjct: 232 EYVELGPLALRDQVDVDDETLQERYDERYGDDDDPPTFDDVREELLADSIREQYRTELIE 291

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK--GDFTPVIHGSFG-- 347
            G +   +A EQ  SL  + + +F  E    V  +D I     +  GD + V+  +F   
Sbjct: 292 AGDELGNIAFEQPDSLEPL-VDTFGLE----VRTSDWIDRDGGEGIGDLSEVVEEAFSED 346

Query: 348 -----------------YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
                            Y++  +   + +     +EV   I  Q+R  +A++  +E  + 
Sbjct: 347 VLEHGYNSDLIRVDEDRYLVVRLLEHREAEPKPLEEVADTIREQLRQERAADLARERAEE 406

Query: 391 LEEFLALGTSMDEIS 405
           L   L  G S+DE++
Sbjct: 407 LVARLRDGDSLDELA 421


>gi|115351959|ref|YP_773798.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
 gi|115281947|gb|ABI87464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
          Length = 644

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/363 (19%), Positives = 143/363 (39%), Gaps = 32/363 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V ++   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAINGHKITRVEFDGAFRQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D     + +   L+ +G+  ++Y +   
Sbjct: 99  ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L+   +    V           +      + R V  +V       A   P++A LT +
Sbjct: 159 YSLALQQIPASIVASAFTPKGPAQRLSELAAQQREVQALVQKTSDYAAKVQPTDAQLTAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271
           ++ +K ++  PE   I Y+++         + ++ +++  Y+ N   + S  ++R     
Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPNDADIKKFYDDNPTHFRSEAQVRVSHIF 278

Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                              EQL+   +   D+  Q  +K  +    A + G  L  I+ G
Sbjct: 279 IAAASDASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKNSQDAPSAAK-GGDLGFITRG 337

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S +     D    D+ F+L K+GD + V+    G+ I   + +KPS    F +VK  IA 
Sbjct: 338 STAGGKAFD----DAAFAL-KQGDVSGVVQSDLGFHILKATEVKPSVVKPFADVKDQIAV 392

Query: 374 QMR 376
           Q++
Sbjct: 393 QLK 395


>gi|285017392|ref|YP_003375103.1| peptidylprolyl isomerase (rotamase d) protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472610|emb|CBA15115.1| probable peptidylprolyl isomerase (rotamase d) protein [Xanthomonas
           albilineans]
          Length = 661

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 143/695 (20%), Positives = 275/695 (39%), Gaps = 112/695 (16%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN-- 58
           ML+ +R+ +  W+A   + +L +PFL    +  L  V G++ V  V   + P S +++  
Sbjct: 1   MLQTLREKTSGWIATAIIGLLMIPFLFVIDTGYLGGV-GANNVAKV---QAPPSWWLSAP 56

Query: 59  SW--------KQELGMISQKIGF-------------VVNSERARSVGLDKKILDNLVSGA 97
           SW          E+     ++GF               +     S+   +K+LD L+   
Sbjct: 57  SWWPVSLLWQHHEISTEQFRMGFEQARQQARQQQGEAFDPREFESIDNKRKVLDQLIDEQ 116

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR------EGINEKEY 151
            +    E  G+      V   IA  P F   + KF  + +   LA         + ++  
Sbjct: 117 VVKLAAEQAGVVIGDASVRDYIASIPAFQ-NNGKFDPERYRLALASGTPPRTPAMFQQLV 175

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP-SN 210
            D   + +  T ++    G  + +  L+    +   E R V+  +L    +PA   P S+
Sbjct: 176 RDALQQSVIPTGLMESAFGSKQETERLM----KMLGETRDVELAMLP--EMPADTAPVSD 229

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
           A + QW++ +  +++ PE   I Y+  +  +           L+  YE+ K ++  P+ R
Sbjct: 230 AQVQQWYDTHTSDFKQPETVSIEYVELNAAKLPASKPADEATLRKRYEEEKARFVEPDQR 289

Query: 271 TVEQLVFPNQKEADE-----------AFQSLKKGKKFIQLA----EEQGKSLSDISLGSF 315
               ++    K+A             A ++ + G  F  LA    ++ G   +   LG  
Sbjct: 290 LASHILISAGKDAASQKAAEAKAVKLAAEAKRPGADFAALARANSDDPGSKNAGGDLGWV 349

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            K  +      D++F++ K G+    +   FGY +  +  +K     SF++V+  +    
Sbjct: 350 EKGVMVK-PFEDALFAM-KPGEIVGPVKSEFGYHVIQLREVKGGKGKSFEQVRDQL---- 403

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS-----IDLP---LVDFAGKDVKG 427
               ASE+++ D ++    L+ G  +DE+ +    ++     + LP   L  F      G
Sbjct: 404 ----ASEQLQADNEKALSALS-GKLVDEVYKNPTELASAAKDVGLPVQTLGPFTRASASG 458

Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVA-----LPDGSYMWVQIKESIPARDRKLEEV 482
             +AA P   +  F      D L +D TV+      P+ S M +++ +  P +   L +V
Sbjct: 459 --IAAQPAVLRAAF-----SDALVQDGTVSDPINLGPNHSVM-IRVTQHQPEQILPLAKV 510

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD--NE 540
              V       +TA+  ++KA+ L++   K G+  + +    G   L   QIN M   + 
Sbjct: 511 HEQVIAAVHADRTAKAAAAKADALLVRLRK-GETLQALA---GPEKL---QINPMPALSR 563

Query: 541 NKFFGYDGISQVFSGPVEM----------VKCFPIENGLSYVVFKVTNSKVG-----PVQ 585
           +     +    +FS P  +          +   P   G  Y +F VT    G     P +
Sbjct: 564 SPMPSPEANRTIFSAPRPVAGKPSFGKVALPAAPGAGGKRYALFAVTKVMPGDLSKVPAE 623

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           ++  F   L Q+       + +  ++ +Y V+V +
Sbjct: 624 QQTTFKQQLAQIEGAADAKAYVDAMRKRYKVSVQE 658


>gi|242309441|ref|ZP_04808596.1| cell-binding factor 2 [Helicobacter pullorum MIT 98-5489]
 gi|239524012|gb|EEQ63878.1| cell-binding factor 2 [Helicobacter pullorum MIT 98-5489]
          Length = 272

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 13/157 (8%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GK----KFIQL 299
           K+ +S+ E++  Y  NK K+  PE+  V  ++  ++ EA      +K+ GK    KF +L
Sbjct: 108 KVRVSDSEIEKFYNDNKTKFVQPEVAKVRHILVNSETEAKNIISDVKRAGKNSLAKFEEL 167

Query: 300 AEEQGKSLSDISLGSFS----KEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVS 354
           A+ + K  S  + G        + +P+   AD+ F L  KG +T   +   FGY + +V 
Sbjct: 168 AKSKSKDGSAQNGGDVGWIARGQVVPE--FADAAFKL-NKGQYTQTPVKTQFGYHVIYVE 224

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + KP+ T++ ++VK  I   +R+ K  E VK++ + L
Sbjct: 225 DKKPTTTLALKDVKGQIEQNLRLMKFQENVKKEGQEL 261


>gi|224417810|ref|ZP_03655816.1| hypothetical protein HcanM9_00899 [Helicobacter canadensis MIT
           98-5491]
 gi|253827151|ref|ZP_04870036.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141352|ref|ZP_07803545.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253510557|gb|EES89216.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130383|gb|EFR48000.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 489

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 117/267 (43%), Gaps = 26/267 (9%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV+ I  V     F+ WG  D  FS S S+ V  VG+ KV  +     + +  G+ +Q +
Sbjct: 17  WVSTIAFV--GAGFVGWGSYD--FS-STSNAVAVVGKTKVSINEMQREYSRLYGIYNQLV 71

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  ++ E+A+ +G++++ L+NL+  A +  +  D+GL A    +   I  +  F   + +
Sbjct: 72  GGTLDEEQAKKMGIEEQALNNLIIKALMLNYAYDLGLRASKEEIIQAITSTESFQN-NGQ 130

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F   ++   L    +  K++ +   + L    +  +    + P  +          E  S
Sbjct: 131 FDEQIYKRILQENQLKPKDFEESIKENLILQKLDALLDMPLTPLEI----------ETLS 180

Query: 192 VDYIVLNNRHVPAI------ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
             Y + +  H+  I       +P+N  + +++E+ KD Y+      IS +   +      
Sbjct: 181 AAYSMEDLVHIQIIDKKTINVNPTNEEVKRYWEENKDIYQTERGYEISSVFIPLD----S 236

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTV 272
           IEI    L++ YE  K ++   E + +
Sbjct: 237 IEIQEASLESYYEDFKNQFLDSEGQVI 263


>gi|332295328|ref|YP_004437251.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178431|gb|AEE14120.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermodesulfobium
           narugense DSM 14796]
          Length = 409

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 18/158 (11%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--- 302
           + IS  E++A YE++K+++  PE   +  ++   ++EA+  ++ LK+GK F  LA+E   
Sbjct: 191 VTISEAEVKAYYEEHKKEFVQPEQIHLRHILVKTEQEANNIYEQLKQGKDFATLAKEYSI 250

Query: 303 ------QGKSLSDISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
                 +G  L  IS  S     +PD++  AD +    K  +F+  I   FGY I     
Sbjct: 251 DTPTKDKGGDLGWISKASL----VPDLAKAADEL----KDNEFSKPIKSPFGYHIIEKLG 302

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            +PS  +SF EVK  +  Q+   K ++ +++ +K  +E
Sbjct: 303 TRPSKELSFDEVKNTLTAQLLRNKQAQSLEKWFKEKKE 340


>gi|1574034|gb|AAC22665.1| peptidyl-prolyl cis-trans isomerse, putative [Haemophilus
           influenzae Rd KW20]
          Length = 594

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 159/360 (44%), Gaps = 39/360 (10%)

Query: 56  FINSWKQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADH 112
           F+N + QE  + +Q+ G  FV  S+    V  L + I++ ++    L Q+++++ L    
Sbjct: 28  FLNRYNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSD 87

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             +   I   P F  K  KF + V+   L +  +      D Y  +L  +  +     G+
Sbjct: 88  EMIKRAIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGV 142

Query: 173 RPSNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
             S  ++      +   +F+ R      L+     A    S+  +  ++E  + ++  PE
Sbjct: 143 ANSEFIVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPE 202

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
             ++ YI        + +++++ E+   Y+ NK ++ +  +  ++   F N+++A  A++
Sbjct: 203 QVKVQYIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYE 259

Query: 289 SLKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            L+KG  F  +A  + KSL  IS      LG  ++  +P  +  D+  +L + G ++  I
Sbjct: 260 ELQKGANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPI 315

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391
           +    Y   H+  ++     S + VK  IA+ +R +           +AS+K  ED K L
Sbjct: 316 NVDGNY---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 372


>gi|15837793|ref|NP_298481.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c]
 gi|9106161|gb|AAF84001.1|AE003953_5 peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c]
          Length = 655

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 145/685 (21%), Positives = 276/685 (40%), Gaps = 100/685 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI--------WGLSDALFSVSGSST---------V 43
           ML+ +R+ +  W+A   + +L +PFL          G  D +  +  S T          
Sbjct: 1   MLQKLREKTSGWIATAIIGLLVIPFLFVIDVRYIEGGGKDDVAQLQASPTWWKSAPAFWP 60

Query: 44  VSV--GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
           +S+   RQ +    F + + Q       + G   ++    ++    K+LD L+    +  
Sbjct: 61  ISLLWQRQGISKQEFQSRFDQARLQQRAQQGEGFDAREFETLNNKLKLLDQLIEEHVMRL 120

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLS 160
             E  G+    G V   IA    F  K  KF+ D +   LA+E  +   +  ++Y + + 
Sbjct: 121 VAEGAGVVISDGAVRSIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYENYVRSMM 179

Query: 161 RTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI----ADPSNAVLT 214
           +  ++   +F  G  P N  L++      + R+ + + L     PA+    A+ S+  + 
Sbjct: 180 QLSMIPSTIFDSGFVP-NTELERILVLLGQTRNAELVTL-----PALKLDMAEISDMQIK 233

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           +W+  ++D++R PE     Y+  D     +    S   L+  Y+  +      E R    
Sbjct: 234 EWYAAHRDDFRQPETLSFEYVDLDAAHLPRPTP-SEAVLRKRYDAQQRGEAQNEQRKAAH 292

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDI-SLGSFSKEYIPDVS------ 324
           ++     +A     +  K  K ++ A + G    +L+ I S    SK+   D+       
Sbjct: 293 ILITAGADAASQKVAEAKAAKLVEEARKPGVDFAALARINSQDPGSKDAGGDLGWVQRGM 352

Query: 325 ----LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 D +F++ K G+    I   FG  +  +  IK +  + F+ V+  +        A
Sbjct: 353 MVKPFEDVLFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQL--------A 403

Query: 381 SEKVKEDYKRLEEFL-ALGTSMDEISRREKIVS-----IDLPLVDFAG---KDVKGKEVA 431
           +E+ KED  +  EF    G  MD + +    +S     + LPL        +D  G  +A
Sbjct: 404 AEQTKEDIDK--EFNDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSRRDAVG--IA 459

Query: 432 AIPYKEQLLFR----VFGK-DDP--LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
           A P  +++LF       GK  DP  ++ +H+V L     +    ++ +P  D+  E+V+ 
Sbjct: 460 ANPAVQRVLFNHDFIQEGKVSDPIQINPNHSVVL---RVIAHTTEQQLPL-DKVREQVVA 515

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
            V+ D    +  ++ +S A+ LV    K G   +++ K   A  L    +  +    +  
Sbjct: 516 AVRAD----RADKDGASAADALVARLQK-GDTLQEVAK---AEKLQITPLTGLQRTAQVP 567

Query: 545 GYDGISQVFSG--PVE---MVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYL 594
            +     +FS   PV     V    +++G  Y VF VT    G     P ++K      L
Sbjct: 568 AFAATRAIFSALSPVAGKPTVGKVRLDDG-RYAVFTVTRVIPGDLTKLPEEQKAMLRQQL 626

Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVH 619
            Q+     + + +  ++ ++ VT+H
Sbjct: 627 DQIEGTLAVHAYVDMMRKRFKVTIH 651


>gi|167581584|ref|ZP_02374458.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
           thailandensis TXDOH]
          Length = 644

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/407 (18%), Positives = 157/407 (38%), Gaps = 43/407 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +   FL+++ +P L I G+         S+ V +V   K+  + F   
Sbjct: 1   MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGM 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   +
Sbjct: 59  LRQQVDQARQMLGAQFDAKAFDTPQRRQQLLDGLIQQRALADETQRLHLTASDGAVRQTL 118

Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D  F  + +   LA +G+   +Y +     L+   +    V       
Sbjct: 119 LSDPVVASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +  +      + R V  ++L +        P++A ++ +++ +K  +   E   I Y++
Sbjct: 179 SVARRLTELAEQQREVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273
           +         + S+ +++  Y+ N  +Y +  ++R                        E
Sbjct: 239 YSQAAAAAAAQPSDIDVKKYYDDNIARYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAE 298

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329
           QL+   +   D+          F Q+AE+  +     +    LG  ++      +  D  
Sbjct: 299 QLLAEVKAHPDQ----------FAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
               KKG+ + V+ G FG+ I   +++KP+      EVK  I   ++
Sbjct: 349 AFALKKGEISGVVQGDFGFHILKATDLKPAVVKPLAEVKDSIVADLK 395


>gi|148262224|ref|YP_001228930.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
 gi|146395724|gb|ABQ24357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
          Length = 310

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           KR+    F   + E++ +IS+ ELQ  Y KNK+K+ + E      ++   + EA E  + 
Sbjct: 113 KRVVVEAFLKKKVEEEAKISDTELQDFYNKNKDKFKTGEQVKASHILVKTEPEAQEILKQ 172

Query: 290 LKKGKKFIQLAEEQ---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           LK G  F +LA++      +     LG F K   +PD   A  +F L K+G  + V+   
Sbjct: 173 LKAGGNFDELAKKHSIDAAAAKGGDLGWFGKGAMLPDFEKA--VFGL-KEGAISGVVKTK 229

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           FGY I  ++  +P+    F EVK    +Q++     EK +E +K+L+E L
Sbjct: 230 FGYHIIKLTGKRPAGIRPFDEVK----DQLKAAILPEKQQEVFKKLKEDL 275


>gi|294666558|ref|ZP_06731799.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603702|gb|EFF47112.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 656

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 91/421 (21%), Positives = 159/421 (37%), Gaps = 62/421 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L +PFL + + ++     G++ V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100
              L     +I    F    E+AR     ++                 +LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158
              ED G+      V   IA  P F   D KFS D + + LA +G   +     D   + 
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177

Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVL 213
             +  V+   V   G   +    ++  +   E R V+  +L     P  AD    S+A +
Sbjct: 178 SLQQSVIPQAVAESGFA-TKSEFERLLKLMGETRDVELAMLP----PPAADTAPVSDAQI 232

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
            QW++ +  ++R PE   I Y+  +              L+  YE  K ++  PE R   
Sbjct: 233 KQWYDGHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLAS 292

Query: 274 QLVF---PNQKEADEA-----------------FQSLKKGKKFIQLAEEQGKSLSDISLG 313
            ++    P+      A                 F +L K       +++ G  L  +  G
Sbjct: 293 HILISAGPDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEKG 352

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           +  K +       D++FS+ K G+    I   FGY +  +  +K     SF++V+  +A 
Sbjct: 353 TMVKPF------EDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAA 405

Query: 374 Q 374
           +
Sbjct: 406 E 406


>gi|71901123|ref|ZP_00683230.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
 gi|71729128|gb|EAO31252.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
          Length = 655

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 144/689 (20%), Positives = 274/689 (39%), Gaps = 110/689 (15%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI--------WGLSDALFSVSGSST---------V 43
           ML+ +R+ +  W+A   + +L +PFL          G  D +  +  S T          
Sbjct: 1   MLQKLREKTSGWIATAIIGLLVIPFLFVIDVRYIGGGGKDDVAQLQASPTWWKSAPAFWP 60

Query: 44  VSV--GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
           +S+   RQ +    F + + Q       + G   ++    ++   +K+LD L+    +  
Sbjct: 61  ISLLWQRQGISKQEFQSRFDQARLQRRAQQGEGFDAREFETLSNKRKLLDQLIEEHVMRL 120

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLS 160
             E  G+      V   IA    F  K  KF+ D +   LA+E  +   +  ++Y + + 
Sbjct: 121 VAEGAGVVISDEAVRSIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYENYVRSMM 179

Query: 161 RTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI----ADPSNAVLT 214
           +  ++   +F  G  P N  L++      + R+ + + L     PA+    A+ S+  + 
Sbjct: 180 QLSMIPSAIFDSGFVP-NTELERILALLGQTRNAELVTL-----PALKLDTAEISDVQIK 233

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           +W+  ++D++R PE     Y+  D     +    S   L+  Y+  +      E R    
Sbjct: 234 EWYAVHRDDFRQPETLSFEYVDLDAAHLPRPTP-SEAVLRKRYDAQQRGEAQNEQRKAAH 292

Query: 275 LVF------PNQKEADEAFQSL-----KKGKKFIQLA---------EEQGKSLSDISLGS 314
           ++        +QK A+     L     K G  F  LA         ++ G  L  +  G 
Sbjct: 293 ILITVGADAASQKVAEAKAAKLVEEARKPGADFAALARINSQDPGSKDAGGDLGWVQRGM 352

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
             K +       D++F++ K G+    I   FG  +  +  IK +  + F+ V+  +   
Sbjct: 353 MVKPF------EDALFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQL--- 402

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS-----IDLPLVDFAG---KDVK 426
                A+E+ KED  +    +  G  MD + +    +S     + LPL        +D  
Sbjct: 403 -----AAEQTKEDIDKAFNDVT-GKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSRRDAV 456

Query: 427 GKEVAAIPYKEQLLFR----VFGK-DDP--LSKDHTVALPDGSYMWVQIKESIPARDRKL 479
           G  +AA P  +++LF       GK  DP  ++ +H+V L     +    ++ +P  D+  
Sbjct: 457 G--IAANPAVQRVLFSHDFIQGGKVSDPIQINPNHSVVL---RVIAHTTEQQLPL-DKVR 510

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           E+V+  V+ D    +  ++ +S A+ LV    K G    ++ K   A  L    +  +  
Sbjct: 511 EQVVAAVRAD----RADKDGASAADALVARLQK-GDTLEEVAK---AEKLQITPLTGLQR 562

Query: 540 ENKFFGYDGISQVFSG--PVE---MVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDK 589
             +   +     +FS   PV     V    ++NG  Y VF VT    G     P ++K+ 
Sbjct: 563 TAQVPAFAATRAIFSALSPVAGKPTVGKVRLDNG-RYAVFTVTQVIPGDLTKFPEEQKEM 621

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
               L Q+     + + +  ++ ++ VT+
Sbjct: 622 LRQQLDQIEGTLAVHAYVDMMRKRFKVTI 650


>gi|167619701|ref|ZP_02388332.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
           thailandensis Bt4]
 gi|257138861|ref|ZP_05587123.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
           thailandensis E264]
          Length = 644

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/407 (18%), Positives = 157/407 (38%), Gaps = 43/407 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +   FL+++ +P L I G+         S+ V +V   K+  + F   
Sbjct: 1   MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGM 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   +
Sbjct: 59  LRQQVDQARQMLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTL 118

Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D  F  + +   LA +G+   +Y +     L+   +    V       
Sbjct: 119 LSDPVVASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +  +      + R V  ++L +        P++A ++ +++ +K  +   E   I Y++
Sbjct: 179 SVARRLTELAEQQREVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273
           +         + S+ +++  Y+ N  +Y +  ++R                        E
Sbjct: 239 YSQAAAAAAAQPSDIDVKKYYDGNIARYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAE 298

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329
           QL+   +   D+          F Q+AE+  +     +    LG  ++      +  D  
Sbjct: 299 QLLAEVKAHPDQ----------FAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
               KKG+ + V+ G FG+ I   +++KP+      EVK  I   ++
Sbjct: 349 AFALKKGEISGVVQGDFGFHILKATDLKPAVVKPLAEVKDSIVADLK 395


>gi|88810611|ref|ZP_01125868.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
           Nb-231]
 gi|88792241|gb|EAR23351.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
           Nb-231]
          Length = 645

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/391 (19%), Positives = 164/391 (41%), Gaps = 19/391 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++  VA I + +L +PF  +G+ +  F+   + TV +V    +  +    + 
Sbjct: 1   MLQTIRDRAQGIVAYIIVGLLIIPFAFFGVYN-YFTGDSNPTVATVNGIDITRAELDAAV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + + +G   N        L  ++LD LV  A L  FI   G       +   I 
Sbjct: 60  QRQQSQLRELLGDQYNPALFDESHLRPQVLDRLVDQAVLLYFIRSQGFRVTDESLRSFIR 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   D +FS + + + L + G +  +Y     +      +    VG    +   + 
Sbjct: 120 SQPYFLA-DGQFSKERYRAVLRQSGYSTDQYEAQLRQQQLLRQLELGIVGTAVATKHEMA 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      ++R + ++ +++ +           + Q++  +K  +  P   ++SYI    +
Sbjct: 179 RFVALERQSRDLAWLKIDSANFRDQTQVDAKAIQQYYATHKQAFEQPAQVKVSYIELSEN 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKEADE--------AFQSLK 291
               ++E+ +  +Q  YE+ K+  F+ P+ R V  ++    K+A +          ++L+
Sbjct: 239 ALADQLELDDKAVQRFYEEFKDSRFTVPDARRVRHILIKLPKDASQHQIEVARGQIEALR 298

Query: 292 ----KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK---GDFTPVIHG 344
               +G  F +LA+ Q + +   +  S    ++    +A +I   A K   G+ +  I  
Sbjct: 299 ERIVQGASFAELAQRQSQDVGS-ARQSGDLGFVRQGEMAKAIDEAAFKLPIGETSEPIRS 357

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            FG+ +  V+  +      F EV+  I  ++
Sbjct: 358 RFGWHLIEVTASRAGGVKPFSEVESQIRQEL 388


>gi|212709201|ref|ZP_03317329.1| hypothetical protein PROVALCAL_00234 [Providencia alcalifaciens DSM
           30120]
 gi|212688113|gb|EEB47641.1| hypothetical protein PROVALCAL_00234 [Providencia alcalifaciens DSM
           30120]
          Length = 622

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 159/385 (41%), Gaps = 27/385 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59
           M+E +R  + +   K+ L ++ + F++ G+  A + + GSS     V  Q +       +
Sbjct: 1   MMEDLRTKANSPFIKVLLAIIILSFVLTGV--AGYVIGGSSNNAAEVNGQPISKEQLQQA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ--------FIEDIGLEAD 111
           ++QE   + + +G     ++   V  +   +  L + A  +         +  ++ L A 
Sbjct: 59  FQQERQSLQEYLG-----DKFSEVASNDNYMKELRTQALNNLINNQLINQYANELQLSAS 113

Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
             ++   I    +F   + KF  + +   L+R  IN   +     + L R  +   F G 
Sbjct: 114 DQQIEQAIFAMQIFQ-TNGKFDSEKYREILSRYNINADNFAAQIRQDLVRAQLGKSFTGT 172

Query: 172 --MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
               PS +        + + R V    L+   + A    +   L  ++   ++++ +PE 
Sbjct: 173 EFALPSEV--KAYAELFMQEREVRTATLSLAALQAKQTVTEDELKAYYAANQNSFISPEQ 230

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
            ++SY+  D      K  ++++E+++ YE+N + +   E +    +   ++K+A      
Sbjct: 231 VQVSYVEMDAASM-PKASVTDEEVKSYYEQNLKNFTKAEQKLYSMIQVASEKDAQALEAE 289

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFS--LAKKGDFTPVIHGSF 346
           LK G  F  LA E  KS    S G+     ++   S    I S  L +KG  +  I    
Sbjct: 290 LKGGADFATLATE--KSTDKFSAGNKGVIGWMEATSTPSEIISANLTEKGQVSAPIKVQD 347

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDI 371
            YV+  + ++KP     F EVK  I
Sbjct: 348 NYVLFRLDDVKPEAVKPFDEVKSSI 372


>gi|161524527|ref|YP_001579539.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans ATCC 17616]
 gi|189350717|ref|YP_001946345.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia multivorans
           ATCC 17616]
 gi|160341956|gb|ABX15042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans ATCC 17616]
 gi|189334739|dbj|BAG43809.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia multivorans
           ATCC 17616]
          Length = 644

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/363 (18%), Positives = 143/363 (39%), Gaps = 32/363 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V +V   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAVNGHKITRVEFDGAFRQQIDQARQALGAQFDIKAFDTPEHRKQVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D     + +   ++ +G+  ++Y +   
Sbjct: 99  ADETQRLHLTASDNAVREALLSDPMIASLKKPDGSIDVERYAQLMSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L+   +    V        L  +      + R V  +VL      +   P++A L  +
Sbjct: 159 YSLALQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDYASKVQPTDAQLAAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271
           ++ +K  +  PE   I Y+++         + ++ +++  Y+ N   + +  ++R     
Sbjct: 219 YDAHKQQFATPETATIEYLVYSPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIF 278

Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                              EQL+   +   D+  Q  +K  +    A + G  L  I+ G
Sbjct: 279 IAAASDASAADKAAAKAKAEQLLADVKAHPDQFAQIAEKNSQDAPSAAK-GGDLGFITRG 337

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S +     D    D+ F+L K+G+ + V+    G+ I   + +KPS    F EVK +IA 
Sbjct: 338 STAGGKAFD----DAAFAL-KQGEISGVVQSDLGFHILKATEVKPSIVKPFAEVKDEIAA 392

Query: 374 QMR 376
            ++
Sbjct: 393 TLK 395


>gi|167586935|ref|ZP_02379323.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ubonensis Bu]
          Length = 644

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/369 (19%), Positives = 146/369 (39%), Gaps = 32/369 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V +V   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAVNGHKITRVEFDGTYRQQIDRARQALGAQFDLKSFDTPEHRKEVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D     + +   L+ +G+  ++Y +   
Sbjct: 99  ADETQRLHLTASDNAVREALLSDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L+   +    V        L  +      + R V  +VL      +   P++A L  +
Sbjct: 159 YSLALQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDYASKVQPTDAQLAAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271
           ++  K ++  PE   I Y+++         + ++ +++  Y+ N   + +  ++R     
Sbjct: 219 YDAQKQSFATPETATIQYLVYSPAAAAANAQPTDADIKKFYDDNPTHFRTEAQVRVSHIF 278

Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                              EQL+   +   D+  Q  +K  +    A + G  L  I+ G
Sbjct: 279 IAAAGDASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKSSQDAPSAAK-GGDLGFITRG 337

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S +     D    D+ F+L K+GD + V+    G+ I   + +KP+    F EVK  IA 
Sbjct: 338 STAGGKAFD----DAAFAL-KQGDVSGVVQSDLGFHILKATEVKPAAVKPFAEVKDAIAV 392

Query: 374 QMRITKASE 382
           +++   AS+
Sbjct: 393 ELKQQYASK 401


>gi|57242050|ref|ZP_00369990.1| conserved hypothetical secreted protein, putative [Campylobacter
           upsaliensis RM3195]
 gi|57017242|gb|EAL54023.1| conserved hypothetical secreted protein, putative [Campylobacter
           upsaliensis RM3195]
          Length = 501

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 169/388 (43%), Gaps = 35/388 (9%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++ V+ FV   +  WG  D  ++ + +S+V  VG +K+ F  F 
Sbjct: 1   MLTWMQHHKKYLVVTIWISVIAFVGAGVVGWGAYD--YNQNRNSSVAIVGNEKISFVEFN 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + Q  G  +Q     ++ E A  +GL    L++L+    L  F +++GL A+   V  
Sbjct: 59  LRYNQIYGYYNQISNGALSEENAEKLGLKDIALNSLIEDKLLLNFAKNLGLWANENEVIQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           E++ +  F   +  F  +++ + L +  I  K Y    +  +    +  +F    + + L
Sbjct: 119 ELSATEEFQNINGIFDKNIYYAILKQNNILSKNYEQILSDRIILNKLNKIFEFPAKENEL 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +  A  F  +   +  I  + +    +A   NA L Q +E +K++++  +    SY L 
Sbjct: 179 QMLAASYFMQDALEIAKITFDKKD---LAVDENA-LKQLWEAHKNDFKTQK----SYELS 230

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK- 294
               + KK   S DEL+A Y  E NK KY + + + ++   F   KE      SL+K K 
Sbjct: 231 SYFIEAKKSNFSQDELRAFYQNENNKFKYKAQDGKILD---FELAKEMVIKDLSLEKTKN 287

Query: 295 ----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF---- 346
               KF+ L  ++     D ++    + Y P   LA +      K    P+I        
Sbjct: 288 LANEKFVALRNQKDDFQKDFNISEEDQNY-PLELLAKT----KNKDILKPIIWQKCENKI 342

Query: 347 ---GYVIAHVSNIKPSFTVSFQEVKKDI 371
              G++I  ++   P    +F+E + ++
Sbjct: 343 CKDGFIILRLNQTNPVRVKNFEEARAEV 370


>gi|254284340|ref|ZP_04959308.1| putative peptidyl-prolyl cis-trans isomerase D [gamma
           proteobacterium NOR51-B]
 gi|219680543|gb|EED36892.1| putative peptidyl-prolyl cis-trans isomerase D [gamma
           proteobacterium NOR51-B]
          Length = 620

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 124/563 (22%), Positives = 242/563 (42%), Gaps = 83/563 (14%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP--FSSFINSWKQ 62
           +R+ +++  AKI + ++ + F  +GL   L   SG+S     G +  P    + I S K+
Sbjct: 1   MREGAKSTAAKIVIGLIVLSFAAFGLESLLPGGSGTSVAEVNGEEISPAELQNAIASQKR 60

Query: 63  ELGMI-SQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +L  I   +I   +++ ER R        L+ L+    L Q   D+G+ A    +  EI 
Sbjct: 61  QLTQIFGDRIDPAMLDDERIR-----PSALEGLIERKLLLQHAVDLGMIASAQAIGEEIT 115

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL-- 178
               F  +D  FS D + S LA  G+      + + +M S+  ++    G +  S  +  
Sbjct: 116 AIEAFQ-RDGVFSPDQYKSVLANAGLTP----ERFRRMQSQDLMLSQLQGAISQSAFVSP 170

Query: 179 --LDQAKRFYFENRSVDYI--VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
             ++ A + + E R V Y+   L++   P   D   A + ++++  +D +       + Y
Sbjct: 171 SEMEAAAKVWAEERDVRYLEAPLSDFDRPDSVD--EAEIAEYYDNNQDRFVTEPAANVGY 228

Query: 235 ILFDVHEKEKKIEISNDE--LQAEYEKNKEKY-FSPEIRTVEQLVFPNQKEADEAF---- 287
           IL  V +  + +    DE  ++ ++E  +++Y  + + R    L+  + +++D ++    
Sbjct: 229 ILLAVEDFYEPV----DEALVREQFEAVRDEYEVADQSRVSHILIIESDEDSDTSYADRV 284

Query: 288 ----QSLKKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
               + L  G+ F QLA E     G + S   LG       P+  + ++I SL+      
Sbjct: 285 GEVARRLDAGEDFGQLAMELSDDVGSAGSGGELGFTDGTAFPE-PMEEAIASLSVGAYSG 343

Query: 340 PVIHGS---FGYVIAHVSNIKPSFTVSFQEVKK--DIANQMR-ITKASEKVKEDYKRLEE 393
           PV   +   F  V   V+  +P F    +E+++   I+N  R +  A +++K+      +
Sbjct: 344 PVETDAGTHFIRVEERVAGERPDFATLREELEQAIKISNAERDLLLAVDELKDLTFNAPD 403

Query: 394 FL----ALGTSM---DEISRREKI-VSIDLPLVD--FAGKDVKGKEVAAIPYKEQLLFRV 443
            +    ALG S+   +E++R   + V  D  +VD  F+ +  +G                
Sbjct: 404 LIGPAEALGFSVAEEEELTRSNGVGVWADERVVDTVFSEEVYRGG--------------- 448

Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT-VKTAEEVSSK 502
                  +    + L D  ++ V++ E IPAR + L++V  ++    KT  +TA    + 
Sbjct: 449 -------NNSEVLELADSQFLVVRVNEQIPARQKPLQDVAGEIAAQLKTEARTA--ALTD 499

Query: 503 ANQLVLEYSKEGKNFRDIGKNLG 525
             ++V +    G+    I   LG
Sbjct: 500 FTEMVSQRLAAGETLEAIANELG 522


>gi|28198390|ref|NP_778704.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1]
 gi|182681032|ref|YP_001829192.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           M23]
 gi|28056460|gb|AAO28353.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1]
 gi|182631142|gb|ACB91918.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           M23]
 gi|307579500|gb|ADN63469.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 655

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 140/684 (20%), Positives = 273/684 (39%), Gaps = 98/684 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW--------GLSDALFSVSGSST---------V 43
           ML+ +R+ +  W+A   + +L +PFL          G  D +  +  S T          
Sbjct: 1   MLQKLREKTSGWIATAIIGLLVIPFLFVIDVRYIGVGGKDDVAQLQASPTWWKSAPAFWP 60

Query: 44  VSV--GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
           +S+   RQ +    F + + Q       + G   ++    ++   +K+LD L+    +  
Sbjct: 61  ISLLWQRQGISKQEFQSRFDQARLQQRAQQGEGFDAREFETLSNKRKLLDQLIEEHVMRL 120

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLS 160
             E  G+      V   IA    F  K  KF+ D +   LA+E  +   +  + Y + + 
Sbjct: 121 VAEGAGVVISDEAVRTIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYESYVRSMM 179

Query: 161 RTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI----ADPSNAVLT 214
           +  ++   +F  G  P N  L++      + R+ + + L     PA+    A+ S+  + 
Sbjct: 180 QLSMIPSAIFDSGFVP-NTELERILALLGQTRNAELVTL-----PALKLDTAEISDMQIK 233

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           +W+  ++D++R PE     Y+  D     +    S   L+  Y+  +      E R    
Sbjct: 234 EWYAVHRDDFRQPETLSFEYVDLDAAHLPRPTP-SEAMLRKRYDAQQRGEAQNEQRKAAH 292

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI----SLGSFSKEYIPDVS------ 324
           ++     +A     +  K  K ++ A + G   + +    S    SK+   D+       
Sbjct: 293 ILITAGADAASQKVAEAKAAKLVEEARKPGADFAALARINSQDPGSKDAGGDLGWVQRGM 352

Query: 325 ----LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 D++F++ K G+    I   FG  +  +  IK +  + F+ V+  +        A
Sbjct: 353 MVKPFEDALFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQL--------A 403

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVS-----IDLPLVDFAG---KDVKGKEVAA 432
           +E+ KED  +    +  G  MD + +    +S     + LPL        +D  G  +AA
Sbjct: 404 AEQTKEDIDKAFNDVT-GKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSRRDAVG--IAA 460

Query: 433 IPYKEQLLFR----VFGK-DDP--LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            P  +++LF       GK  DP  ++ +H+V L     +    ++ +P  D+  E+V+  
Sbjct: 461 NPAVQRVLFNHDFIQEGKVSDPIQINPNHSVVL---RVIAHTTEQQLPL-DKVREQVVAA 516

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
           V+ D    +  ++ +S A+ LV    K G+   ++ K   A  L    +  +    +   
Sbjct: 517 VRAD----RAEKDEASAADALVARLQK-GETLEEVAK---AEKLQITPLTGLQRTAQVPA 568

Query: 546 YDGISQVFSG--PVE---MVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLT 595
           +     +FS   PV     V    +++G  Y VF VT    G     P ++K      L 
Sbjct: 569 FAATRAIFSALSPVAGKPTVGKVRLDDG-RYAVFTVTRVIPGDLTKLPEEQKAMLRQQLD 627

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVH 619
           Q+     + + +  ++ ++ VT+H
Sbjct: 628 QIEGTLAVHAYVDMMRKRFKVTIH 651


>gi|213026808|ref|ZP_03341255.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 257

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 92/192 (47%), Gaps = 15/192 (7%)

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++++ K  +  PE  R+SYI  D    +  +  S+ ++QA Y+++ +++  PE      +
Sbjct: 1   YYDQNKVRFMTPEQFRVSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSII 58

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIF 330
               + +A     +L KG+ F  LA+E+   +     G           +P++  A    
Sbjct: 59  QTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA---- 114

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            L +KG  + VI  S G+++A + +I+P+      EV+ DIA +++     EK  + Y  
Sbjct: 115 GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYA 170

Query: 391 LEEFLALGTSMD 402
           L++ ++   S D
Sbjct: 171 LQQKVSDAASND 182


>gi|77459915|ref|YP_349422.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens Pf0-1]
 gi|77383918|gb|ABA75431.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens Pf0-1]
          Length = 623

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 88/414 (21%), Positives = 176/414 (42%), Gaps = 36/414 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59
           ML+ IR  S+ W+AK  + V+     + G  DA+F + +  +    V  +++  +    +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIVALMALTGF-DAIFQATTHKNEAAKVNGEEISQNELSQA 59

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
              +   + Q++G   ++       L +  L  L+    L Q  E          +   I
Sbjct: 60  VDMQRRQLMQQLGKDFDASLLDEKMLRESALKGLIDRKLLLQGAEQSKFAFSEAALDQVI 119

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            ++P F   D KFS D F   + + G +  ++     +ML++  ++G    G+  S  + 
Sbjct: 120 LQTPEFQ-VDGKFSSDRFDQVIRQLGYSRMQF----RQMLAQEMLIGQLRAGVAGSGFVT 174

Query: 180 DQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYRAPEYKR 231
           D A+   F   E ++ D+  LN +     ADPS   LT      +++++   +  P+   
Sbjct: 175 D-AQVLAFARLEKQTRDFATLNIK-----ADPSAVKLTDDEVKAYYDEHAKEFMTPDQVV 228

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------- 283
           I Y+         ++ + +++LQA Y+K      S + R    L+  N K          
Sbjct: 229 IDYLELKKSSFFDQVAVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKTTEAQAKAKI 287

Query: 284 DEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           +E    L KG+KF  LA+E     G + +   LG ++   + D +   +++SL K     
Sbjct: 288 EEVQARLAKGEKFEALAKEFSQDPGSANNGGDLG-YAGPGVYDPAFEKALYSLNKDQVSE 346

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           PV    FG+ +  +  ++     +   +K  +  +++  +  ++  E  K+LE+
Sbjct: 347 PV-RTDFGFHLIKLLGVEAPEVPTLASLKDKLTRELKTQQVEQRFVEATKQLED 399


>gi|256823166|ref|YP_003147129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
           DSM 16069]
 gi|256796705|gb|ACV27361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
           DSM 16069]
          Length = 624

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 96/459 (20%), Positives = 190/459 (41%), Gaps = 43/459 (9%)

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
           L ++I + L+S   L   +   GL A   ++       P F      +S D     LA++
Sbjct: 71  LRQQIKEQLISEQVLRANLTKAGLTASEQQIKAWAREFPAFQ-IGGVYSADQAKMILAQQ 129

Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE----NRSVDYIVLNNR 200
           G +E+ +     + +++         G+  SN  L+     Y++     R V Y+ +   
Sbjct: 130 GWSEERFRQFARQQIAQE----QLEQGVGASNFALNFEVEAYYQLQEQTRDVGYVRVARE 185

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI--EISNDELQAEYE 258
                 D S++ + +++E+ +  +  PE   + Y+   + E  + +  ++SN+++ + YE
Sbjct: 186 AFSDSVDVSDSEVKEYYEQNQTQFEQPEMVNLRYVRLSLTELSQDLMADVSNEQITSFYE 245

Query: 259 KNKEKYFSP-EIRTVEQLVFPNQKEADEAFQSL----KKGKKFIQLAEEQ---------G 304
           +NK  Y  P EI     L+  + ++A    QSL    ++G  F +LA+E          G
Sbjct: 246 QNKANYQDPAEILVAHILIDSSVEDAQSKAQSLLSDIEQGADFAELAKEHSSDTFSGENG 305

Query: 305 KSLSDISLGSFSKE------YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
             L  +     S +      ++P+   A    +L   GD T ++   FGY I  + + K 
Sbjct: 306 GQLDWVDAVPTSDDNPTGTGWVPEFEAA--ALALENVGDVTDLVESQFGYHIIKLVDKKA 363

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVSIDLPL 417
           +     + V+ +I  Q+ + +A +   E    L E+    G  +++ + +   V +++  
Sbjct: 364 ADVSPLENVQDEIRQQLALEQAQKIFFEKQAILNEKLFEYGDDLEKFAEQ---VELEIQE 420

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPAR 475
                KD     +A  P     L + F     +       + L     +++ +K+  P++
Sbjct: 421 TGLFSKD-SATGIADNPV---FLEKAFSASILESTEVSDMIELSQDDIVYLTVKDYQPSQ 476

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
            + LEEV   V    K  K AE   + A Q++ E    G
Sbjct: 477 VQPLEEVKQIVVDTLKEEKIAEATKAYAEQVLAELEAGG 515


>gi|197118887|ref|YP_002139314.1| hypothetical protein Gbem_2510 [Geobacter bemidjiensis Bem]
 gi|197088247|gb|ACH39518.1| conserved hypothetical protein [Geobacter bemidjiensis Bem]
          Length = 526

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 116/275 (42%), Gaps = 18/275 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPF-----LIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML I+RK  ++ + KI  VV+ + F     L+WG      +   +     V   K+    
Sbjct: 1   MLGIMRKYKQSILIKIVFVVIVLSFIGTIFLVWGRGGDKSANGPAGYAAMVDGTKISMDD 60

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F  ++ +   +  Q  G  +  E  + +GL K  + +++      +  + +G++ D   V
Sbjct: 61  FQKNYYRTRNLYEQIYGRSLTPEMEKQMGLKKATISSMIDNVLTLKEAKKMGIKVDKDEV 120

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML----SRTDVVGMFVGG 171
             EIA+ P F   +  F   ++ + L    +  KE+ +   + L    +R  V       
Sbjct: 121 AAEIAKIPSFQN-NGAFDFTLYQNTLKANRVTPKEFEETQEQDLLVQKARNKV------K 173

Query: 172 MRPSNLLLDQAKRFYFENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
            + +    D  + F  +N  V+  Y+  +   V      ++A L  + + ++  ++ PE 
Sbjct: 174 EKATVTDADLMQEFKKQNDKVNLQYVSFSPADVKGSIKLTDAELNVYLQDHQAQFKTPEQ 233

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
             I+Y L        K+ ++ +E Q  Y+KN ++Y
Sbjct: 234 VSIAYTLVSPAALAAKVSVTPEEAQNYYQKNIDRY 268


>gi|167836273|ref|ZP_02463156.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia
           thailandensis MSMB43]
          Length = 644

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/407 (18%), Positives = 156/407 (38%), Gaps = 43/407 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +   FL+++ +P L I G+         ++ V +V   K+  + F   
Sbjct: 1   MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDENANVAAVNGHKITRAEFDGM 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   +
Sbjct: 59  LRQQVDQARQMLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTL 118

Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P+       D  F  + +   LA +G+   +Y +     L+   +    V       
Sbjct: 119 LSDPVIASLKKPDGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVASAFTPK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +  +      + R V  +VL      A   P++A ++ +++ +K  +   E   I Y++
Sbjct: 179 SIARRLTELAEQQREVQPMVLKPADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273
           +         + S+ +++  Y+ N   Y +  ++R                        E
Sbjct: 239 YSQAAAVAAAQPSDIDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAE 298

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329
           QL+   +   D+          F Q+AE+  +     +    LG  ++      +  D  
Sbjct: 299 QLLAEVKAHPDQ----------FAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
               KK + + V+ G FG+ I   +++KP+      EVK  IA  ++
Sbjct: 349 AFALKKDEVSGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIAADLK 395


>gi|221215062|ref|ZP_03588029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD1]
 gi|221164998|gb|EED97477.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD1]
          Length = 644

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/363 (18%), Positives = 143/363 (39%), Gaps = 32/363 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V +V   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAVNGHKITRVEFDGAFRQQIDQARQALGAQFDIKAFDTPEHRKQVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D     + +   ++ +G+  ++Y +   
Sbjct: 99  ADETQRLHLTASDNAVREALLSDPMIASLKKPDGSIDVERYAQLMSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L+   +    V        L  +      + R V  +VL      +   P++A L  +
Sbjct: 159 YSLALQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTGDYASKVQPTDAQLAAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271
           ++ +K  +  PE   I Y+++         + ++ +++  Y+ N   + +  ++R     
Sbjct: 219 YDAHKQQFATPETATIEYLVYSPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIF 278

Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                              EQL+   +   D+  Q  +K  +    A + G  L  I+ G
Sbjct: 279 IAAASDASAADKAAAKAKAEQLLADVKAHPDQFAQIAEKNSQDAPSATK-GGDLGFITRG 337

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S +     D    D+ F+L K+G+ + V+    G+ I   + +KPS    F EVK +IA 
Sbjct: 338 STAGGKAFD----DAAFAL-KQGEISGVVQSDLGFHILKATEVKPSIVKPFAEVKDEIAA 392

Query: 374 QMR 376
            ++
Sbjct: 393 TLK 395


>gi|90416122|ref|ZP_01224055.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium
           HTCC2207]
 gi|90332496|gb|EAS47693.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium
           HTCC2207]
          Length = 618

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 99/492 (20%), Positives = 192/492 (39%), Gaps = 55/492 (11%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
            ++++ + F   G+     S SG+ T V V  +KV   S + +               ++
Sbjct: 16  IVILIAIVFAFSGIGSLSMSGSGADTAVIVNGEKVTELSVLRA---------------IS 60

Query: 77  SERARSV----GLDKKILDN----------LVSGATLDQFIEDIGLEADHGRVWGEIARS 122
           SE+ R +    GLD  +L++          L+    L Q  +  G+          +  +
Sbjct: 61  SEKRRILNENEGLDASLLEDELIRPQVVEQLIGRRLLSQAAKSGGMGISSRTTSKLLLGT 120

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL---- 178
           P F  +D +F  D+++  +  +G     +++    ML    ++  +V G   S  +    
Sbjct: 121 PAFLSEDGRFDQDLYLYTIRAQGYTSGTFLE----MLRDDLLIEQYVRGFVASGFVTASE 176

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           LD       + RS  Y+ L  +      D S+  +  ++E     Y+APE   I YI  +
Sbjct: 177 LDLIASITEQQRSYYYLTLPLQPAVDAVDLSDEQIATYYEDNNQRYQAPEQVIIDYIELN 236

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKKGKKF 296
                    ++ +++ A YE+ ++   S   R    ++   P+     E  + L  G+ F
Sbjct: 237 PELFSATQSVAEEQILARYEEQRDSLESTTSRQAAHILLAQPSDDVLAEINEKLAAGEAF 296

Query: 297 IQLAEEQGKSLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LA+E  + +        LG  S +  P+ S   ++ +L + G+ +P +    G  +  
Sbjct: 297 EALAKEYSEDVGSADFGGDLGYTSGDTFPE-SFETALEAL-QVGEVSPPVSTDSGIHLIK 354

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR-EKIV 411
           + +I+    V F   +  I  ++        + E    L+E      ++ EI+   E   
Sbjct: 355 LLDIQEKI-VDFDSERARIEQELVTELTDVWLVEKLANLKELSYNAENLAEIATDLELTA 413

Query: 412 SIDLPLVDFAGKDVKGK-EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
            I  P     G  +     V    +  Q+L   +  D        + L D  Y+ +++ +
Sbjct: 414 QISEPFTRAGGAGISANPAVYKAAFSSQVLEDSYASD-------VLELGDDRYVVLKLNK 466

Query: 471 SIPARDRKLEEV 482
           SIPAR + L EV
Sbjct: 467 SIPARQKALSEV 478


>gi|78777490|ref|YP_393805.1| hypothetical protein Suden_1292 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498030|gb|ABB44570.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 487

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 153/373 (41%), Gaps = 38/373 (10%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSG-SSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
           W++ I  V     F+ WG     +S    +  V  VG  ++       S+       SQ 
Sbjct: 17  WISTIAFVG--AGFVGWGQ----YSYGDKAGAVAKVGSVEITMGELQKSYSNIYAQYSQM 70

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
                + E+A+S GL  + L+ L   A +    +   LE     +  EI     F  KD 
Sbjct: 71  FKGEFDEEKAKSFGLQSQALNFLTQQALVLNLAKSYNLEVSDEELLKEITSKDYFF-KDG 129

Query: 131 KFSHDVFVSRLAREGINEKEY-IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
            F  DV+   L++  I  KEY  D   ++L R  +  + +        ++D A  F   +
Sbjct: 130 VFDKDVYKDVLSKNNIKTKEYEADIKKELLIRKTLSLLKIQTKESEQKIIDTA--FSIAD 187

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           + +DY VLN   +  I D SN  L  ++EK ++N+ +     I YI  D    +K  E +
Sbjct: 188 K-IDYKVLNANQI--ILDTSNESLKSFWEKIQNNFMSEVSYDIKYIKHD----KKSNEYN 240

Query: 250 NDELQAEYEKNK------EKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKKGKKFIQ 298
           +  L   Y +NK      E    P     E++ +      ++KEA + + S KKG+  I+
Sbjct: 241 DAALNEYYSENKISLKDGEGKIIPFEDAKEKIKYELDAKESKKEALKKYVSYKKGE--IE 298

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
            +E Q  ++S  S  SF  E    +S       L     F+  I     Y I  +    P
Sbjct: 299 PSEIQTATIS-ASNNSFGTEAFEAIS------KLTSTSPFSKPIMVEDNYFIFELVTTNP 351

Query: 359 SFTVSFQEVKKDI 371
           +   S++E K ++
Sbjct: 352 AKPKSYEEAKSEV 364


>gi|301594637|ref|ZP_07239645.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB059]
          Length = 606

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 173/433 (39%), Gaps = 32/433 (7%)

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
           +  K LD LVS   L Q  E +G+     ++   +A+ P    ++ +FS  ++ + L   
Sbjct: 67  IQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQQPSLQ-ENGQFSQKLYENYLRSI 125

Query: 145 GINEKEYI-----DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
           G+  +  I     DH  KML+ T     F      S + L Q      E R++    +  
Sbjct: 126 GMTSEGLIASLRQDHALKMLTST-----FADYSLVSKVDLMQIANLQTEQRTLHLASIKL 180

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
               A    SN   T ++ K+++ ++ P    + Y++       K    ++ EL+  Y K
Sbjct: 181 DPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAK 240

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------GKKFIQLAEEQGKSLSDIS 311
             E       R V+ ++       D A Q L K        G  F Q A +  +  +  +
Sbjct: 241 FVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKT 300

Query: 312 LGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
            G   + Y P V   +   ++ SL K G  +  +   +GY I   +  + +   SF+  K
Sbjct: 301 KGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHIIE-AETQANQIPSFEAEK 358

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID-LPLVDFAGKDVKG 427
             +  ++   K +    +    L E +    S+D + ++ K   I+ L  V  A ++   
Sbjct: 359 PRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKGTKIESLNGVTLATQN--- 415

Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
               + P  +  LF    K+   +    + L +G  +WV++++   A  + L + + +VK
Sbjct: 416 -PYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEVK 474

Query: 488 K---DWKTVKTAE 497
               D K  K A+
Sbjct: 475 AKVIDEKARKAAQ 487


>gi|194289547|ref|YP_002005454.1| peptidyl-prolyl cis-trans isomerase [Cupriavidus taiwanensis LMG
           19424]
 gi|193223382|emb|CAQ69387.1| PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Cupriavidus taiwanensis LMG
           19424]
          Length = 644

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/437 (19%), Positives = 170/437 (38%), Gaps = 46/437 (10%)

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP----LFHGKDNKFSHDVFVSRLA 142
           K +L+ L+    +   +    L     ++  EI+  P    L  GKD K     ++  L 
Sbjct: 86  KAVLEQLIQQRVMANAVASEHLTVSDAKLLEEISSLPAIAQLPRGKDGKIDDKAYLQLLQ 145

Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
            +G+  +++       L+   +             L+++      + R V  ++      
Sbjct: 146 SQGMTPEQFDARMRFELAMQQLGASVAATAFVPKSLIERLMAARDQQRDVQALLFKPAGY 205

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
            A   P  A L  +++ ++ ++  PE  ++ Y++           ++ +EL++ YE N  
Sbjct: 206 TAKVQPDAAALKAYYDSHQQDFSVPEQAKVEYLVLSGEALAASQAVTPEELKSYYESNIA 265

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE--------------------- 301
           ++   E R    ++    K+A  A +   K K    L E                     
Sbjct: 266 RFRVDEQRRASHILISAPKDAPAAQRQAAKDKATKLLEEVRKHPDTFADVARKNSQDPGS 325

Query: 302 -EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E+G  L  +  G+  K +       D++++L K+G  + V+   FGY I  ++  KP+ 
Sbjct: 326 AEKGGDLGFMGRGALVKPF------EDAMYAL-KEGQISDVVETDFGYHIIKLTGTKPAE 378

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T   + V+ ++  ++R      K   D K  E+  A G ++ E +   K  +    L   
Sbjct: 379 TRPLEAVRTELEAELR------KQFADKKFAEQADAFGNTVYEQADSLKPAADKFKLTIQ 432

Query: 421 AGKDVKGKEVAAIPYK-----EQLLFRVFGKDDPLSKDHT--VALPDGSYMWVQIKESIP 473
               V  +   A+  +     E+LL  +F  D   +K +T  V +   + +  +I    P
Sbjct: 433 TADKVTRQPNPALGAQSPLNNEKLLKALFSDDAIKNKRNTEAVQVAPNTLVAARIVAYRP 492

Query: 474 ARDRKLEEVLTDVKKDW 490
           A  RK EEV   V++ +
Sbjct: 493 ATVRKFEEVEAQVREGY 509


>gi|238021983|ref|ZP_04602409.1| hypothetical protein GCWU000324_01888 [Kingella oralis ATCC 51147]
 gi|237866597|gb|EEP67639.1| hypothetical protein GCWU000324_01888 [Kingella oralis ATCC 51147]
          Length = 610

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 167/402 (41%), Gaps = 41/402 (10%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           RT V  I L ++ V F+ +G   +L  +S  + +V VG Q +   +   +          
Sbjct: 9   RTPVT-ILLSLIAVSFMGYGFV-SLQGISRDNYIVKVGDQIITRYALDQA---------- 56

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
               V N+E A      + +   L+  A L +  + +G+     ++   +  +P FH   
Sbjct: 57  ----VQNTEAAGEPASREAVFQTLLQRAYLLEGAKQLGIVVSDEQIKQIVVDNPQFHDTS 112

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
            KF   +F + L     +E+ ++    + LS   ++   +     S+    Q        
Sbjct: 113 GKFDPKLFQAYLTNTRQSEESFMQAQRENLSVAALL-QTLNSNAVSDFQAQQVINAVLAP 171

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           RS    VLN +         +A L +++E  K +Y  P+  +  YI+    +   K  +S
Sbjct: 172 RSTRAYVLNPQAFADKVKADDAALKKYYEANKKDYLLPQGAKFEYIVLSPKDIAGKQSVS 231

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ-------------SLKKGKKF 296
           + E++A Y  +K     P+ R V  ++    K AD A +             +    ++F
Sbjct: 232 DAEIEAAYNASKGS-LKPK-RRVSHILIEAPKSADAATREKARAEAEKIAAEAKAHPEQF 289

Query: 297 IQLA----EEQGKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            ++A    ++ G + +   LG  +++  I   +L D+ F+L  KG+ + V+   FGY + 
Sbjct: 290 AEIAKRASQDVGSAANGGDLGEIAQDGKIGSKALEDAAFAL-NKGEVSGVVESDFGYHVL 348

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            V++I     VS    K  I + ++  KA ++  +  + L E
Sbjct: 349 RVTDIA---DVSLAAQKDSIRSSLQAKKAQQEYNKQREALSE 387


>gi|315638232|ref|ZP_07893414.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
           upsaliensis JV21]
 gi|315481768|gb|EFU72390.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
           upsaliensis JV21]
          Length = 501

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 169/389 (43%), Gaps = 37/389 (9%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++ V+ FV   +  WG  D  ++ + +S+V  VG +K+ F  F 
Sbjct: 1   MLTWMQHHKKYLVVTIWISVIAFVGAGVVGWGAYD--YNQNRNSSVAIVGNEKISFVEFN 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + Q  G  +Q     ++ E A  +GL    L++L+    L  F +++GL A+   V  
Sbjct: 59  LRYNQIYGYYNQISNGALSEENAEKLGLKDIALNSLIEDKLLLNFAKNLGLWANENEVIQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           E++ +  F   +  F  +++ + L +  I  K Y       +    +  +F    + + L
Sbjct: 119 ELSAAEEFQNVNGIFDKNIYYAILKQNNILSKNYEQILGDRIILNKLNKIFEFPAKENEL 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +  A  F  +   +  I  + +    +A   NA L Q +E +K++++  +    SY L 
Sbjct: 179 QMLAASYFMQDALEIAKITFDKKD---LAVDENA-LKQLWEAHKNDFKTQK----SYELS 230

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK- 294
               + KK   S DEL+A Y  E NK KY + + + ++   F   KE      SL+K K 
Sbjct: 231 SYFIEAKKSNFSQDELRAFYQNENNKFKYKAQDGKILD---FELAKEMIIKDLSLEKTKN 287

Query: 295 ----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD-FTPVIHGSF--- 346
               KF+ L  ++     D ++    + Y  +      + + AK  D   P+I       
Sbjct: 288 LANEKFVALRNQKDDFQKDFNISEEDQNYPLE------LLAKAKNKDILKPIIWQKCENK 341

Query: 347 ----GYVIAHVSNIKPSFTVSFQEVKKDI 371
               G++I  ++   P    +F+E + ++
Sbjct: 342 ICKDGFIILRLNQTNPVRVKNFEEARAEV 370


>gi|163781832|ref|ZP_02176832.1| hypothetical protein HG1285_03078 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883052|gb|EDP76556.1| hypothetical protein HG1285_03078 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 437

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 102/446 (22%), Positives = 180/446 (40%), Gaps = 73/446 (16%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M  +I+K  R  +A I + V  + FL W     +FSVS    +  + R     + +  S 
Sbjct: 1   MYGLIQKHKR--LAAIIIAVASLSFLFW-----MFSVSDIKQMFGLQRCAAAVNDYCISL 53

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E     +K   ++  E  R++ + +++L +L++   L Q   D+G+ A    V   I 
Sbjct: 54  R-EFNHELRKYQSLLEKEELRTL-VKRQVLFSLINRELLYQKALDVGVVASDREVAELIK 111

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F  +  KFS  ++   L R G+   EY  +  K L+   ++     G   S   L+
Sbjct: 112 KDPQFQ-EGGKFSFKLYAETLERAGLTPVEYEGYLKKSLTIRKLLRFIKSGTYLSPKELE 170

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +R      S    +LN   V     P+                               
Sbjct: 171 FQERILSARFSGRAYLLNASSVKLDYKPTL------------------------------ 200

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                     +EL+  Y +N EK+  P ++        ++ +A   ++ LK+GK      
Sbjct: 201 ----------EELKEFYSRNAEKFSLPSVKRFRVWETADKGKAQSIYRELKRGKV----- 245

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPS 359
             +G SL       F +E +P  +L D++ +L     FT   + G + YVI ++    P 
Sbjct: 246 -PEGGSL-------FKEEELPS-ALKDTVRNLKVTEPFTLTKVKGKY-YVI-YLEESSPG 294

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
              SF+E +KDI   +   K +E V++  + L E L+ G  +D    R    +++  +  
Sbjct: 295 RVKSFEEARKDIEKLLVEEKKAELVEKKARELRELLSKGARVDHKHVRFDNSTVEEFITL 354

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFG 445
           F    ++G EV  + + E    RVFG
Sbjct: 355 F---KIQGDEVLRLVFSED---RVFG 374


>gi|239994001|ref|ZP_04714525.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           macleodii ATCC 27126]
          Length = 528

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/411 (18%), Positives = 170/411 (41%), Gaps = 31/411 (7%)

Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
           D+GL     ++   I + P F     +F ++ F + L + G    ++ D+    +++  +
Sbjct: 5   DMGLRVSDKQIRETITQMPEFQFG-GQFDNERFQAILRQNGFQVADFRDYLRVQMTQNQL 63

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
                      +  + QA     + R   Y+++++       + ++A +  ++     ++
Sbjct: 64  AAALTNSSFALDGEVQQANALQRQTRDAKYVLVSSDEFAGSIEVTDADVEAFYNNNIASF 123

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------ 278
              E  +++Y+   V + + ++ +  + ++  YE N   Y   E R V  ++        
Sbjct: 124 DTDEQVKLAYVKLSVDDLKDRVSVDEEAVRTYYENNLGSYGKEEERRVSHILIEAGDDAD 183

Query: 279 NQKEADEAFQS-LKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAK 334
             K   E+ ++ L  G  F  LAE           G    F    + D +  ++ F+L  
Sbjct: 184 AAKAKAESLKAELDNGADFAALAEADSDDTFSAENGGDLDFITPEMMDPAFDEAAFALQN 243

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            GD + V+   FG+ I  ++++K +   SF EV  +I + +    A EK  E    L E 
Sbjct: 244 VGDVSDVVETEFGFHIIKLTDLKEAQVKSFDEVAGEIRDTLLYDAAMEKYFELQNTLAEI 303

Query: 395 -LALGTSMDEISRREKIVSIDLPLVD-------FAGKDVKGKEVAAIPYKEQLLFRVFGK 446
              +  ++++ +      ++DLP+ +        A  D+    +  + +  +L+      
Sbjct: 304 AFEVPDTLEDAAN-----AVDLPVQESVVFSRNTAPADLSFPGLLDVAFSSELI------ 352

Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
           D+ L+ D  + L D + +  ++ E  P R + LEEV   ++   K  K+ E
Sbjct: 353 DEGLNSD-IIELDDETVVVARVIEHQPQRTQSLEEVREGIEASVKAEKSKE 402


>gi|197116615|ref|YP_002137042.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type
           [Geobacter bemidjiensis Bem]
 gi|197085975|gb|ACH37246.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type
           [Geobacter bemidjiensis Bem]
          Length = 324

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 15/160 (9%)

Query: 244 KKIE----ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
           KK+E    IS+ +++A YEKNKEK+ S        ++  ++ EA +    LKKG  F +L
Sbjct: 120 KKVEESGNISDADMKAFYEKNKEKFQSGAQIRASHILVKSEAEAKDIQNQLKKGASFEEL 179

Query: 300 AEEQ---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A++    G +     LG FSK   IPD       F L K+G+ + ++   FGY I   + 
Sbjct: 180 AKKHSIDGAAQKGGDLGWFSKGSMIPD--FEKVAFGL-KEGETSGIVKTQFGYHIIKKTG 236

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
            +P+   SF++VK    +Q++     E+ +E +K+L++ L
Sbjct: 237 DRPAGARSFEDVK----DQIKAAMVPERQQETFKKLKDEL 272


>gi|188992771|ref|YP_001904781.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167734531|emb|CAP52741.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris]
          Length = 656

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 88/418 (21%), Positives = 158/418 (37%), Gaps = 56/418 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L +PFL + + ++     G++ V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100
              L     +I    F    E++R     ++                 +LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158
              ED G+      V   IA  P F   D KFS D + + LA +G   +     D   + 
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-IDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177

Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             +  V+   V   G   +    ++      E R V+  +L        A  S+A + QW
Sbjct: 178 SLQQSVIPQAVAESGFA-TKSEFERLLTLMGETRDVELAMLPEPTA-DTAPVSDAQIKQW 235

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           ++ +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    ++
Sbjct: 236 YDGHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRLASHIL 295

Query: 277 F------PNQKEADEA--------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
                    QK  +E               F +L K       +++ G  L  +  G+  
Sbjct: 296 ISAGSDAAAQKAGEEKAAKLAAQAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMV 355

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
           K +       D++F++ K GD    I   FGY +  +  +K     SF++V+  +A +
Sbjct: 356 KPF------EDALFAM-KAGDVVGPIKTEFGYHVIQLREVKGGQGKSFEQVRDQLAAE 406


>gi|330808576|ref|YP_004353038.1| peptidylprolyl isomerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376684|gb|AEA68034.1| putative peptidylprolyl isomerase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 623

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 85/409 (20%), Positives = 174/409 (42%), Gaps = 26/409 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59
           ML+ IR  S+ W+AK  + V+     + G  DA+F + + S+    V  + +  +    +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIVALMALTGF-DAIFKATTNSNEAAKVNGENISQNELSQA 59

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
              +   + Q++G   ++       L    L  L+    L Q   D         +   I
Sbjct: 60  VDMQRRQLMQQLGKDFDASLLDEKMLRDSALKGLIDRKLLLQGAHDAKFAFSEAALDQVI 119

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            ++P F   D KFS + F   + + G +  ++     +ML++  ++G    G+  S  + 
Sbjct: 120 LQTPEFQ-VDGKFSPERFDQVIRQLGYSRMQF----RQMLAQEMLIGQLRAGLAGSGFVT 174

Query: 180 DQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
           D A+   F   E ++ D+  LN +  PA    ++  +  +++++   +  P+   I Y+ 
Sbjct: 175 D-AQVLAFARLEKQTRDFATLNIKADPASVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLE 233

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--EA------DEAFQ 288
                   ++ + +++LQA Y+K      S + R    L+  N K  EA      +E   
Sbjct: 234 LKKASFFDQVSVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKVTEAQAKAKIEEIQA 292

Query: 289 SLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            L KG+ F  LA+E     G + +   LG ++   + D     ++++L K     PV   
Sbjct: 293 RLAKGESFEALAKEFSQDPGSANNGGDLG-YAGPGVYDPEFEKALYALNKDQVSAPV-RT 350

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            FG  +  +  ++     +F  +K  +  +++  +  ++  E  K+LE+
Sbjct: 351 DFGLHLIKLLGVEAPEVPTFASLKDKLTRELKTQQVEQRFVEATKQLED 399


>gi|66769563|ref|YP_244325.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66574895|gb|AAY50305.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 656

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 88/418 (21%), Positives = 158/418 (37%), Gaps = 56/418 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L +PFL + + ++     G++ V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100
              L     +I    F    E++R     ++                 +LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158
              ED G+      V   IA  P F   D KFS D + + LA +G   +     D   + 
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-IDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177

Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             +  V+   V   G   +    ++      E R V+  +L        A  S+A + QW
Sbjct: 178 SLQQSVIPQAVAESGFA-TKSEFERLLTLMGETRDVELAMLPEPTA-DTAPVSDAQIKQW 235

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           ++ +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    ++
Sbjct: 236 YDGHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRLASHIL 295

Query: 277 F------PNQKEADEA--------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
                    QK  +E               F +L K       +++ G  L  +  G+  
Sbjct: 296 ISAGSDAAAQKAGEEKAAKLAAQAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMV 355

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
           K +       D++F++ K GD    I   FGY +  +  +K     SF++V+  +A +
Sbjct: 356 KPF------EDALFAM-KAGDVVGPIKTEFGYHVIQLREVKGGQGKSFEQVRDQLAAE 406


>gi|289664180|ref|ZP_06485761.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 656

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 156/416 (37%), Gaps = 56/416 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L VPFL + + ++     G++ V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMVPFL-FVIDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100
              L     +I    F    E+AR     ++                 +LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158
              ED G+      V   IA    F   D KFS D + + LA +G   +     D   + 
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIQAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177

Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             +  V+   V   G   +    ++  +   E R V+  +L    V   A  S+A + QW
Sbjct: 178 SLQQSVIPQAVAESGFA-TKAEFERLLKLMGETRDVELAMLPPSAV-DTAPVSDAQIKQW 235

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +E +  ++R PE   I Y+  +  +           L+  YE+ K ++  P+ R    ++
Sbjct: 236 YEGHTQDFRQPETVTIEYVELNAAKMPPATAADEATLRKRYEEEKARFVEPDQRLASHIL 295

Query: 277 FPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
                +A                       F +L K       ++  G  L  +  G+  
Sbjct: 296 ISAGSDAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKNAGGDLGWVEKGAMV 355

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           K +       D++FS+ K GD    I   FGY +  +  +K     SF++V+  +A
Sbjct: 356 KPF------EDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLA 404


>gi|226329062|ref|ZP_03804580.1| hypothetical protein PROPEN_02965 [Proteus penneri ATCC 35198]
 gi|225202248|gb|EEG84602.1| hypothetical protein PROPEN_02965 [Proteus penneri ATCC 35198]
          Length = 276

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 115/250 (46%), Gaps = 15/250 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ IR  +     KI L V+ + F++ G+   LFS SG +    V   K+  S    ++
Sbjct: 1   MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFS-SGVNDAAEVNGYKISRSQLEQAY 59

Query: 61  KQELGMISQKIG----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           +Q    + Q +G     + +SE  + + + ++ LD L++ A LDQF + +G+ A   ++ 
Sbjct: 60  QQRRAQLQQDMGENFAALASSEEGQKL-IRQQALDLLINQALLDQFAQKLGISAGDQQIR 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   + KF +  +V  L    I+     D + + + +  +       ++ ++
Sbjct: 119 DAIFALPYFQ-TNGKFDNKKYVDLLKGNNIDA----DAFAEGIRQNLINQQLKFSIQGTD 173

Query: 177 LLLD-QAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             LD + K F     ++R+V    L+ +        S+  +  ++E+    + APE  +I
Sbjct: 174 FALDSEVKEFAGLMLQSRNVRLASLDIQPFLEKETASDEEVKAFYEQNNQMFIAPEQFKI 233

Query: 233 SYILFDVHEK 242
           SYI  +  ++
Sbjct: 234 SYIQLNAQKR 243


>gi|307610560|emb|CBX00148.1| hypothetical protein LPW_18931 [Legionella pneumophila 130b]
          Length = 316

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 131/312 (41%), Gaps = 34/312 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+     S   S   V V  + +   +F  ++
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60

Query: 61  K-----QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +     Q+L  ++           A    L  ++L+ +++     Q     G E    + 
Sbjct: 61  RRTRAQQDLPQMT----------AADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQA 110

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I + P F  +D  FS   +   L+      + +     + +        F+G    S
Sbjct: 111 NAAIVQIPQFQ-EDGHFSAQRYQQALSGALFTPETFQKEVRQGMLLNQQRFAFMGT---S 166

Query: 176 NLLLDQAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             L D+ KRF   Y + R  DY+ + +      A  S   +  ++ ++   +   E   +
Sbjct: 167 FALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTL 226

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN----------Q 280
            Y+L  +H+ + +I+IS DE+++ YE+NK  Y +P    V  ++F  P           +
Sbjct: 227 DYVLLSMHDIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIK 286

Query: 281 KEADEAFQSLKK 292
           ++ADE +  LKK
Sbjct: 287 QKADEVYSDLKK 298


>gi|226944452|ref|YP_002799525.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Azotobacter
           vinelandii DJ]
 gi|226719379|gb|ACO78550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Azotobacter
           vinelandii DJ]
          Length = 624

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 169/406 (41%), Gaps = 22/406 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AKI + V+ V   + G    L S S S     V   K+  +      
Sbjct: 1   MLQNIRDNSQGWIAKIIIGVIIVLLALTGFDAILTSTSNSQNAAEVNGAKIGLAELNREV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   + Q++G   ++ +     L    L  L+    L Q  E          +   I 
Sbjct: 61  ETQRRQLLQQLGKDFDASQLNEGLLRNAALSGLIERKLLLQGAEAADFAFSQNALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D +F  + F   +A+ G +  +    + +ML +  ++G    G+  S    D
Sbjct: 121 QTPEFQ-VDGRFDANRFDQVIAQMGYSRPQ----FRQMLEQEMLIGQLRAGLAGSGFATD 175

Query: 181 Q--AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           +        E ++ D+  L     PA     + V+  ++E++  +Y   E   + YI   
Sbjct: 176 REIGDFVRLERQTRDFYTLTLSADPAQVTVGDEVVQAYYEEHASSYMTSEQLVVEYIELK 235

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLK-- 291
                 ++EI +++LQA Y+  +E     E R    ++       ++++A    + LK  
Sbjct: 236 RDAFFDQVEIRDEDLQALYQ--REIANLAEQRQAAHILLEVNDKLSEEQAKAKLEELKAR 293

Query: 292 --KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSF 346
             KG+ F  LA+E  +       G       PDV   +    ++SL K+G+ +  +   F
Sbjct: 294 IDKGEDFAALAKEFSQDPGSADKGGDLGYAGPDVYDPAFEKVLYSL-KEGEVSSPVRSEF 352

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           G+ +  + +++     SF  +K+ + ++++  +  +   E  + LE
Sbjct: 353 GWHLIKLLDVQAPEIPSFDTLKEKLVHELKAEQVEQAFVEASRDLE 398


>gi|289668772|ref|ZP_06489847.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 656

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 156/416 (37%), Gaps = 56/416 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L VPFL + + ++     G++ V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMVPFL-FVIDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100
              L     +I    F    E+AR     ++                 +LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158
              ED G+      V   IA    F   D KFS D + + LA +G   +     D   + 
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIQAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177

Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             +  V+   V   G   +    ++  +   E R V+  +L    V   A  S+A + QW
Sbjct: 178 SLQQSVIPQAVAESGFA-TKAEFERLLKLMGETRDVELAMLPPSAV-DTAPVSDAQIKQW 235

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +E +  ++R PE   I Y+  +  +           L+  YE+ K ++  P+ R    ++
Sbjct: 236 YEGHTQDFRQPETVTIEYVELNAAKMPPATAADEATLRKRYEEEKARFVEPDQRLASHIL 295

Query: 277 FPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
                +A                       F +L K       ++  G  L  +  G+  
Sbjct: 296 ISAGSDAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKNAGGDLGWVEKGAMV 355

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           K +       D++FS+ K GD    I   FGY +  +  +K     SF++V+  +A
Sbjct: 356 KPF------EDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLA 404


>gi|219681828|ref|YP_002468214.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471530|ref|ZP_05635529.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           LSR1 (Acyrthosiphon pisum)]
 gi|219624671|gb|ACL30826.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 623

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 99/453 (21%), Positives = 192/453 (42%), Gaps = 58/453 (12%)

Query: 89  ILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           +L  L++   L+Q+ +++  LE +   +   I  SP+F  K+NKFS + +++ L      
Sbjct: 91  VLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIFQ-KNNKFSKERYLNYLTSINST 149

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
             EYI+   K ++  ++    +  +  SN +L + ++   +  S   I+   +      D
Sbjct: 150 NHEYINIIKKKINTENL----IHTISKSNFILKKEEKNIIKLLSQKRII---KKAIVKID 202

Query: 208 PS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
           PS       N     +F+K +DN+  PE  +I+++  ++     KI   N E+   Y KN
Sbjct: 203 PSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFV--ELKTDNFKIHCENKEIYDWYIKN 260

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQG----KSLSDISLGSF 315
             +Y + E R    +   N+++A      L    + F ++A+EQ      S  D  +G  
Sbjct: 261 ITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQSTDPISSKKDGDIGWI 320

Query: 316 SKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV------- 367
           S + IPD +  A+    L KK   + VI     ++I  ++  +        EV       
Sbjct: 321 SIDLIPDEIKHAN----LNKKNQISDVIPFHNEFLIVKLNETQIGTQKKIYEVFDSIKKQ 376

Query: 368 -----KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
                  D+ N+++  K S  +K D  ++E  L                +I +   D+  
Sbjct: 377 IKQKKSLDLYNELK-NKISNNLKNDPGKIERILKEN-------------NILIQETDWFD 422

Query: 423 KDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDRKL 479
           K    K V  IP  +Q +F  ++F KD  +    H + L       ++IK+      +  
Sbjct: 423 KKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQHF 481

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
           E V  ++ K  + +K  +E   K+ +++ + ++
Sbjct: 482 ENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQ 514


>gi|94263261|ref|ZP_01287077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
           proteobacterium MLMS-1]
 gi|93456344|gb|EAT06468.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
           proteobacterium MLMS-1]
          Length = 630

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 176/394 (44%), Gaps = 29/394 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML ++R+ +R+ +  + + ++ + F+ W     +    G  TV  V  + +    F   +
Sbjct: 1   MLALLRRKARSPIVLVAIAIIILVFIFW--LPQMGGDGGPGTVAVVNEEPLSLREFQRRY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            + L     + G V+  +   ++G+ +++L  L+    L Q  +  GL A    V  EI 
Sbjct: 59  NETLSQYRDEFG-VIPPDLLEALGIREQVLQQLIQEQLLLQSAKKTGLPATSSEVQREIQ 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F  +  +F  + +   L    ++ KE+       L R  ++   VG  + S+  + 
Sbjct: 118 SMGEFSDEAGRFDLERYRQTLTAARLSVKEFEQGIRTDLLRRKIIDHLVGFAQVSDDEVR 177

Query: 181 QAKRFYFENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           Q  RF++++  V   Y+ L        + PS   L  +F++   +Y +P   R+ Y+LF 
Sbjct: 178 Q--RFHYDHDQVRLAYLRLAAADFKPASTPSAEELEAFFQENSQDYLSPPMVRLDYLLFT 235

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----------PNQKEADEA- 286
              + + I      + A YE N+E++  PE R    ++             ++KE   A 
Sbjct: 236 PEREPEAIAEEE--IVAYYEANREEFSLPEQRRARHILIRSADNDSPELRASRKEQLRAV 293

Query: 287 FQSLKKGKKFIQL----AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            +  + G  F +L    +E+   +  D  LG F ++ + +  + ++ F+L + G+ + ++
Sbjct: 294 LERARAGHDFAELVALYSEDARAAGGD--LGFFQRDEMVE-PIEEAAFAL-EPGEISDIV 349

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
              FG+ I  +  ++P+  +   EV+ +IA++++
Sbjct: 350 ETRFGFHILKLDELQPARQLELAEVRDEIADRLQ 383


>gi|293399048|ref|ZP_06643213.1| peptidyl-prolyl cis-trans isomerase D [Neisseria gonorrhoeae F62]
 gi|291610462|gb|EFF39572.1| peptidyl-prolyl cis-trans isomerase D [Neisseria gonorrhoeae F62]
          Length = 512

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/246 (19%), Positives = 107/246 (43%), Gaps = 16/246 (6%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ +            
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQ------------ 57

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             N +          +  +L+  A L Q  + +G+     ++   IA  P FH  + KFS
Sbjct: 58  --NEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIADDPNFHDANGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEK 259
           +  +E+
Sbjct: 236 KNAFEE 241


>gi|296313658|ref|ZP_06863599.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           polysaccharea ATCC 43768]
 gi|296839799|gb|EFH23737.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           polysaccharea ATCC 43768]
          Length = 512

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 107/246 (43%), Gaps = 16/246 (6%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  GS  +V VG +K+   S IN   Q           
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGSDYIVQVGDEKISDHS-INVTMQ----------- 57

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             N + A        +  +L+  A L Q  + +G+     ++   I   P FH    KFS
Sbjct: 58  --NEQAAGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSQEQIKQIIVDDPNFHDAGGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+  S+   +Q  +    NR++ 
Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVSDTQAEQLVKLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEK 259
           +  YE+
Sbjct: 236 KNAYEE 241


>gi|148284059|ref|YP_001248149.1| hypothetical protein OTBS_0138 [Orientia tsutsugamushi str.
           Boryong]
 gi|146739498|emb|CAM79204.1| hypothetical protein OTBS_0138 [Orientia tsutsugamushi str.
           Boryong]
          Length = 485

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 149/356 (41%), Gaps = 42/356 (11%)

Query: 39  GSSTVVSVGRQK-VPFSSFINSWKQELGMISQKIGFVVNSER--ARSVGLDKKILDNLVS 95
            SS +V+  + K +  S F+ + K  +  I Q      NS++       + + +L NL+S
Sbjct: 7   NSSDIVTFTKAKNITKSEFMQALKLAMHQIPQ------NSDQNILTQNNIRELVLSNLIS 60

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L+Q   +  L      V+  I  S  F+   N F  ++F + L    I+E +Y D  
Sbjct: 61  THVLEQLAHEYNLTLSTAAVFKFIQNSKAFNNNQN-FDINIFRNILKNLHISEPQYFDQA 119

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV--LNNRHVPAIAD-PSNAV 212
           TK      ++  F+      ++L         E R++  +   L N  + +  D PS+  
Sbjct: 120 TKQQLSEILLHQFINNNYVPSILTKNIINLSAETRNIQLVSIDLQNEQLQSTLDSPSSEQ 179

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY-----FSP 267
           L +++   +  +  PE + ISYI+ D +  + K+ + N  L+  Y  + +++     F+ 
Sbjct: 180 LQEFYNNNQSKFEKPEQRHISYIVLDNNYFKNKVIVDNKSLEEFYRTHSDQFSEKNSFTK 239

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD------------ISLGSF 315
            I  V +    +Q   D+ F         I L E++  S S+            ++L + 
Sbjct: 240 NIAEVREKYVNHQ--VDKLFNDT------ITLLEDEVASGSNSSEIAKMLNVKLLTLNNV 291

Query: 316 SKEYIPD----VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           +K+ + +     ++ D+IF+L +     P+   S   +I  +  I PS    F  V
Sbjct: 292 TKQKLANNKILSNVTDAIFALEEHETSYPLDVSSKMLIIVSIQKIIPSAVEKFDNV 347


>gi|322508302|gb|ADX03756.1| ppiD [Acinetobacter baumannii 1656-2]
          Length = 601

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 92/433 (21%), Positives = 174/433 (40%), Gaps = 32/433 (7%)

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
           +  K LD LVS   L Q  E +G+   + ++   +A+ P    ++ +FS  ++ + L   
Sbjct: 62  IQAKALDILVSRNLLIQQAEKLGISLSNAQIEQMLAQQPSLQ-ENGQFSQKLYENYLRSI 120

Query: 145 GINEKEYI-----DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
           G+  +  I     DH  KML+ T     F      S + L Q      E R++    +  
Sbjct: 121 GMTSEGLIASLRQDHALKMLTST-----FADYSLVSKVDLMQIANLQTEQRTLHLASIKL 175

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
               A    S+   T ++ K+++ ++ P    + Y++       K    ++ EL+  Y K
Sbjct: 176 DPYKAGLTASDQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAK 235

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------GKKFIQLAEEQGKSLSDIS 311
             E       R V+ ++       D A Q L K        G  F Q A +  +  +  +
Sbjct: 236 FVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKT 295

Query: 312 LGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
            G   + Y P V   +   ++ SL K G  +  +   +GY I   +  + +   SF+  K
Sbjct: 296 KGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHIIE-AETQANQIPSFEAEK 353

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID-LPLVDFAGKDVKG 427
             +  ++   K +    +    L E +    S+D + ++ K   I+ L  V  A ++   
Sbjct: 354 PRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKGTKIESLNGVTLATQN--- 410

Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
               + P  +  LF    K+   +    + L +G  +WV++++   A  + L + + +VK
Sbjct: 411 -PYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEVK 469

Query: 488 K---DWKTVKTAE 497
               D K  K A+
Sbjct: 470 AKVIDEKARKAAQ 482


>gi|165976428|ref|YP_001652021.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876529|gb|ABY69577.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 625

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 63/306 (20%), Positives = 126/306 (41%), Gaps = 27/306 (8%)

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
            ++ +L+ LV    L Q+ +++ L     ++  EI  SP+F  +D KFS+D++   L   
Sbjct: 86  FNQSVLNGLVDEELLRQYAKELKLGISAEQIKSEIVNSPVFQ-QDGKFSNDLYQQTLRSN 144

Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
           G++     D Y  +++   +      G+  S+  + + +    +       V    +  A
Sbjct: 145 GLS----ADGYAAIVNEGMLFSQIQEGVIGSDFNVPEQEALLAKLLLQKRQVRLANYSIA 200

Query: 205 IADPSNAVLTQWFEKYKDNYRA----PEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
               + A   +  +KY D +++    PE   + Y+     +    +++++++++  YEKN
Sbjct: 201 KEATNQAASAEELQKYYDAHKSELIEPEKLTVEYVTLTPTDVANNVQVNDEQVKTYYEKN 260

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE---------EQGKSLSDIS 311
           K  Y +        +   N+ +A    + +K G  F +LA+          QG  L    
Sbjct: 261 KADYATKGETRFAHIQLANETDAKAVAEQVKNGADFAELAKTKSTDKLSAAQGGDLGWAK 320

Query: 312 LGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            G+F K +     SL D        G  + V++    Y I  V   K    +  ++VK  
Sbjct: 321 AGTFPKAFEAAAASLQD--------GQVSAVVNVDGAYHIIKVLERKAETVIPLEQVKDQ 372

Query: 371 IANQMR 376
           I   +R
Sbjct: 373 ITKTIR 378


>gi|253700332|ref|YP_003021521.1| hypothetical protein GM21_1709 [Geobacter sp. M21]
 gi|251775182|gb|ACT17763.1| conserved hypothetical protein [Geobacter sp. M21]
          Length = 526

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 116/275 (42%), Gaps = 18/275 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPF-----LIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML I+RK  ++ + KI  VV+ + F     L+WG      +        +V   K+    
Sbjct: 1   MLGIMRKYKQSILIKIVFVVIVLSFVGTIFLVWGRGGEGSADGPGGYAATVDGTKISMDD 60

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F  ++ +   +  Q  G  +  E  + +GL K  + ++V      +  + +G++ +   V
Sbjct: 61  FQKNYYRTRNLYEQIYGRSLTPEMEKQMGLKKTTIGSMVDNVLTLKEAKKMGIKVNKDEV 120

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML----SRTDVVGMFVGG 171
             EIA+ P F   +  F  +++   L    +  KE+ +   + +    +R  V       
Sbjct: 121 AAEIAKIPSFQ-NNGAFDFNLYQQTLKANRVTPKEFEETQEQDILVQKARNKV------K 173

Query: 172 MRPSNLLLDQAKRFYFENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
            + +    D  + F  +N  V+  Y+  +   V      ++A L  + + ++  ++ PE 
Sbjct: 174 EKATVTDADVMQEFKKQNDKVNLQYVSFSPADVKGSIKLTDAELNVYLQDHQAQFKTPEQ 233

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
             I+Y L        K+ ++ +E Q  Y+KN ++Y
Sbjct: 234 VSIAYTLVSPAALAAKVSVTPEEAQNYYQKNIDRY 268


>gi|15597002|ref|NP_250496.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PAO1]
 gi|107101237|ref|ZP_01365155.1| hypothetical protein PaerPA_01002270 [Pseudomonas aeruginosa PACS2]
 gi|9947788|gb|AAG05194.1|AE004606_8 peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PAO1]
          Length = 621

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 75/406 (18%), Positives = 169/406 (41%), Gaps = 22/406 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+ V   + G    + +   S+    V    +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L +  L  L+    L Q  +D         +   I 
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYID-HYTKMLSRTDVVGMFVGGMRPSNLLL 179
           ++P F   D KF+ D F      + I +  Y    + +ML +  ++G    G+  +  + 
Sbjct: 121 QTPEFQ-VDGKFNADRF-----DQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVT 174

Query: 180 DQAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           D   + +   E ++ D+  L  +   + +  S+  +  ++E +K  +  PE   + Y+  
Sbjct: 175 DNELQSFARLEKQTRDFATLAIKADASKSSVSDDEVKAFYEGHKSEFMTPEQVVVEYVEL 234

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-------- 289
                  ++++  ++L+A Y+K      S +      L+  N K  DE  ++        
Sbjct: 235 KKSSFFDQVKVKQEDLEALYQKEIAN-LSEQRDAAHILIEVNDKVGDEQAKAKIDEIKAR 293

Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           L KG+ F  LA+E  + +   + G    ++   + D +  +++++L K+G+ +  +   +
Sbjct: 294 LAKGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPY 352

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY +  +  ++     S + +K  + ++++     ++  E  K LE
Sbjct: 353 GYHLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLE 398


>gi|224418500|ref|ZP_03656506.1| cell binding factor 2 precursor major antigen PEB4A [Helicobacter
           canadensis MIT 98-5491]
 gi|253827813|ref|ZP_04870698.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142030|ref|ZP_07804223.1| cell binding factor [Helicobacter canadensis MIT 98-5491]
 gi|253511219|gb|EES89878.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131061|gb|EFR48678.1| cell binding factor [Helicobacter canadensis MIT 98-5491]
          Length = 271

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 82/157 (52%), Gaps = 13/157 (8%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK--------F 296
           K+++S+ E++  Y +NK K+  PE   V+ ++  ++ +A      LKK  K        F
Sbjct: 108 KVKVSSSEIEKFYNQNKTKFVQPETAKVKHILVSSEADAKNIIADLKKAGKNVASKFEEF 167

Query: 297 IQLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVS 354
            +   + G + +   LG  +K + +P+   AD+ F L  KG +T   +   FGY + +V 
Sbjct: 168 AKAKSKDGSAQNGGELGWIAKGQVVPE--FADAAFKL-NKGQYTQTPVKTQFGYHVIYVD 224

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +P+ T++ ++V   I   +++TK  E V+++ + L
Sbjct: 225 DKRPTTTLALKDVSGQIEQNLKLTKFQENVRKEGQDL 261


>gi|325128356|gb|EGC51240.1| hypothetical protein NMXN1568_0938 [Neisseria meningitidis N1568]
          Length = 512

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/247 (20%), Positives = 110/247 (44%), Gaps = 18/247 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+              
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55

Query: 74  VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            + +E+A   GL +  +  +L+  A L Q  + +G+     ++   I   P FH  + KF
Sbjct: 56  -IQNEQADGGGLSRDAVFQSLLQRAYLKQGSKLMGISVSSEQIKQIIVDDPNFHDANGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++
Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E
Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETE 234

Query: 253 LQAEYEK 259
           ++  +E+
Sbjct: 235 VKNAFEE 241


>gi|254240198|ref|ZP_04933520.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 2192]
 gi|126193576|gb|EAZ57639.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 2192]
          Length = 621

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 75/406 (18%), Positives = 169/406 (41%), Gaps = 22/406 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+ V   + G    + +   S+    V    +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L +  L  L+    L Q  +D         +   I 
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYID-HYTKMLSRTDVVGMFVGGMRPSNLLL 179
           ++P F   D KF+ D F      + I +  Y    + +ML +  ++G    G+  +  + 
Sbjct: 121 QTPEFQ-VDGKFNADRF-----DQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVT 174

Query: 180 DQAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           D   + +   E ++ D+  L  +   + +  S+  +  ++E +K  +  PE   + Y+  
Sbjct: 175 DNELQSFARLEKQTRDFATLAIKADASKSSVSDDEVKAFYEGHKSEFMTPEQVVVEYVEL 234

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-------- 289
                  ++++  ++L+A Y+K      S +      L+  N K  DE  ++        
Sbjct: 235 KKSSFFDQVKVKQEDLEALYQKEIAN-LSEQRDAAHILIEVNDKVGDEQAKAKIDEIKAR 293

Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           L KG+ F  LA+E  + +   + G    ++   + D +  +++++L K+G+ +  +   +
Sbjct: 294 LAKGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPY 352

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY +  +  ++     S + +K  + ++++     ++  E  K LE
Sbjct: 353 GYHLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLE 398


>gi|294627916|ref|ZP_06706495.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292597830|gb|EFF41988.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 656

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 157/417 (37%), Gaps = 54/417 (12%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L +PFL + + ++     G++ V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100
              L     +I    F    E+AR     ++                 +LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK---EYIDHYTK 157
              ED G+      V   IA  P F   D KFS D + + LA +G   +   ++    + 
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVSD 177

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            L ++ +          +    ++  +   E R V+  +L        A  S+A + QW+
Sbjct: 178 SLQQSVIPQAVAESGFATTSEFERLLKLMGETRDVELAMLPPPAA-DAAPVSDAQIKQWY 236

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           + +  ++R PE   I Y+  +              L+  YE  K ++  PE R    ++ 
Sbjct: 237 DGHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILI 296

Query: 278 ---PNQKEADEA-----------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
              P+      A                 F +L K       +++ G  L  +  G+  K
Sbjct: 297 SAGPDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEKGTMVK 356

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
            +       D++FS+ K G+    I   FGY +  +  +K     SF++V+  +A +
Sbjct: 357 PF------EDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAE 406


>gi|241663130|ref|YP_002981490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12D]
 gi|240865157|gb|ACS62818.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12D]
          Length = 646

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/407 (16%), Positives = 164/407 (40%), Gaps = 24/407 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  + L+++F  F+ +G+      +  S     V  + +  +      
Sbjct: 1   MLDFVR-THRRLMFLVLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + Q +G   +  +     + + +LD ++    L   +    L   + ++   I 
Sbjct: 60  REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVLANEVTRANLTISNEKIRDTIL 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + P        D  F  + +V  L+ + +  ++   +    LS+  +    V        
Sbjct: 120 QIPAVAALRKPDGSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L+D+  +   + R V  ++       A  +  +  +  +++ ++  +  PE  +  Y++F
Sbjct: 180 LVDRLIQVRDQQREVQALLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVF 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEAFQSL----- 290
              E  K+I ++ ++++  Y++N  ++ + E R    ++   P+  +  +   +      
Sbjct: 240 SGEEMMKQIPVTPEQIKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEE 299

Query: 291 ------KKGKKFIQLAE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFT 339
                 K    F  LA+    + G +     LG   K   +P     +++F+L + GD +
Sbjct: 300 VLAEVRKNPASFADLAKKYSGDPGSAAQGGELGFLGKGATVP--PFENALFALKQPGDIS 357

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            V+   FG+ I  +  +K       + VK ++  ++R   A++K  E
Sbjct: 358 DVVQSDFGFHIIKLEEVKGGGVQPLEAVKPELERELRTQLANKKYSE 404


>gi|261378747|ref|ZP_05983320.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria cinerea
           ATCC 14685]
 gi|269144903|gb|EEZ71321.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria cinerea
           ATCC 14685]
          Length = 512

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 122/281 (43%), Gaps = 22/281 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  GS  +V VG +K+   S               I  
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGSDYIVQVGDEKISDHS---------------INT 54

Query: 74  VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            + +E+A+     +  +  +L+  A L Q  + +G+     ++   I   P FH    KF
Sbjct: 55  AMQNEQAKGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSQEQIKQIIVDDPNFHDAGGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           SH +    L++  ++E ++++      +  ++V +   G+  S+   +Q  +    NR++
Sbjct: 115 SHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVSDAQAEQLVKLTQVNRTI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                N          ++A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E
Sbjct: 175 RSHTFNPDEFIGQVKAADADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETE 234

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           ++  YE+   +  +      E+L F  +K A E    +KK 
Sbjct: 235 VKNAYEERMARLPA----EGEKLSFEKEKAAVENELKMKKA 271


>gi|299770348|ref|YP_003732374.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. DR1]
 gi|298700436|gb|ADI91001.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. DR1]
          Length = 621

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 105/530 (19%), Positives = 208/530 (39%), Gaps = 39/530 (7%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFIN 58
           +E  R   + W+ K+ L++   P  + G+       + +    +V  Q++      +   
Sbjct: 1   MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           S+K+      Q +  V   E   ++  +  K LD LVS   L Q  E +G+     ++  
Sbjct: 61  SYKE------QYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDTQIEQ 114

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGM 172
            +A+ P    ++ +FS  ++ + L   G+  +  I     DH  KML+ T     F    
Sbjct: 115 MLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTST-----FSDYS 168

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             S + L Q      E R++    +           SN   T ++ K+++ ++      +
Sbjct: 169 LVSKVDLMQIANLQTEQRTLHLASIKLDGYKTGLTASNQEATDYYNKHQNEFKQQSSVDV 228

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEAD 284
            Y++       K    +  ELQ  Y K  E       RTV+ ++           QK A 
Sbjct: 229 DYVVVSPSLMAKPAPATEAELQQAYSKFVETQKKDAKRTVKHILITTDARDDAAAQKLAK 288

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPV 341
           E +  ++ G  F Q A +  +  S  + G   + Y P V   +   ++ SL K G  +  
Sbjct: 289 EVYAKIQGGLTFAQAASQFSEDPSSKAKGGLVEAYAPGVFSDAFDKTVVSL-KNGQISQP 347

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +   +GY I   +  + S   SF+  K  +  ++   K +    +    L E +    S+
Sbjct: 348 VKTQYGYHIIE-AETQASQIPSFEAEKARLTAEVEKNKVATVYSDTVNSLNETIVGNDSL 406

Query: 402 DEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
           + + +  K   ++ L  V  A ++       + P  +  LF    K+   +    + L +
Sbjct: 407 EAVVQEVKGTKVESLNGVTLATQN----PYLSDPNVKIKLFNDDVKNGDRNASSNIQLAN 462

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
           G  +WV++++   A  + L + + + K      K  + V +K   ++ E+
Sbjct: 463 GDTVWVKVRDYHAAGVKPLAQAMNEAKAKVIDEKARKAVQAKIATMLAEF 512


>gi|218892241|ref|YP_002441108.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
           LESB58]
 gi|218772467|emb|CAW28249.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
           LESB58]
          Length = 621

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/406 (18%), Positives = 168/406 (41%), Gaps = 22/406 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+ V   + G    + +   S+    V    +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L +  L  L+    L Q  +D         +   I 
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYID-HYTKMLSRTDVVGMFVGGMRPSNLLL 179
           ++P F   D KF+ D F      + I +  Y    + +ML +  ++G    G+  +  + 
Sbjct: 121 QTPEFQ-VDGKFNADRF-----DQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVT 174

Query: 180 DQAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           D   + +   E ++ D+  L  +   + +  S   +  ++E +K  +  PE   + Y+  
Sbjct: 175 DNELQSFARLEKQTRDFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVEL 234

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-------- 289
                  ++++  ++L+A Y+K      S +      L+  N K  DE  ++        
Sbjct: 235 KKSSFFDQVKVKQEDLEALYQKEIAN-LSEQRDAAHILIEVNDKVGDEQAKAKIDEIKAR 293

Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           L KG+ F  LA+E  + +   + G    ++   + D +  +++++L K+G+ +  +   +
Sbjct: 294 LAKGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPY 352

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY +  +  ++     S + +K  + ++++     ++  E  K LE
Sbjct: 353 GYHLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLE 398


>gi|83718610|ref|YP_442650.1| peptidyl-prolyl cis-trans isomerse D [Burkholderia thailandensis
           E264]
 gi|83652435|gb|ABC36498.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
           thailandensis E264]
          Length = 632

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/391 (17%), Positives = 151/391 (38%), Gaps = 41/391 (10%)

Query: 17  FLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           FL+++ +P L I G+         S+ V +V   K+  + F    +Q++    Q +G   
Sbjct: 3   FLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGMLRQQVDQARQMLGAQF 62

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKF 132
           +++   +    +++LD L+    L    + + L A  G V   +   P+       D  F
Sbjct: 63  DAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLLSDPVVASLKKADGSF 122

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
             + +   LA +G+   +Y +     L+   +    V        +  +      + R V
Sbjct: 123 DAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKSVARRLTELAEQQREV 182

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
             ++L +        P++A ++ +++ +K  +   E   I Y+++         + S+ +
Sbjct: 183 QQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQYLVYSQAAAAAAAQPSDID 242

Query: 253 LQAEYEKNKEKYFS-PEIRT----------------------VEQLVFPNQKEADEAFQS 289
           ++  Y+ N  +Y +  ++R                        EQL+   +   D+    
Sbjct: 243 VKKYYDGNIARYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAEQLLAEVKAHPDQ---- 298

Query: 290 LKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
                 F Q+AE+  +     +    LG  ++      +  D      KKG+ + V+ G 
Sbjct: 299 ------FAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKGEISGVVQGD 352

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           FG+ I   +++KP+      EVK  I   ++
Sbjct: 353 FGFHILKATDLKPAVVKPLAEVKDSIVADLK 383


>gi|15617076|ref|NP_240289.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386976|sp|P57550|PPID_BUCAI RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
 gi|25403639|pir||G84985 peptidylprolyl isomerase (EC 5.2.1.8) [imported] - Buchnera sp.
           (strain APS)
 gi|10039141|dbj|BAB13175.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 623

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 98/453 (21%), Positives = 192/453 (42%), Gaps = 58/453 (12%)

Query: 89  ILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           +L  L++   L+Q+ +++  LE +   +   I  SP+F  K+NKFS + +++ L      
Sbjct: 91  VLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIFQ-KNNKFSKERYLNYLTSINST 149

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
             EYI+   K ++  ++    +  +  SN +L + ++   +  S   I+   +      D
Sbjct: 150 NHEYINIIKKKINTENL----IHTISKSNFILKKEEKNIIKLLSQKRII---KKAIVKID 202

Query: 208 PS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
           PS       N     +F+K +DN+  PE  +I+++  ++     KI   N E+   Y +N
Sbjct: 203 PSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFV--ELKTDNFKIHCENKEIYDWYIRN 260

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQG----KSLSDISLGSF 315
             +Y + E R    +   N+++A      L    + F ++A+EQ      S  D  +G  
Sbjct: 261 ITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQSTDPISSKKDGDIGWI 320

Query: 316 SKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV------- 367
           S + IPD +  A+    L KK   + VI     ++I  ++  +        EV       
Sbjct: 321 SIDLIPDEIKHAN----LNKKNQISDVIPFHNEFLIVKLNETQIGTQKKIYEVFDSIKKQ 376

Query: 368 -----KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
                  D+ N+++  K S  +K D  ++E  L                +I +   D+  
Sbjct: 377 IKQKKSLDLYNELK-NKISNNLKNDPGKIERILKEN-------------NILIQETDWFD 422

Query: 423 KDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDRKL 479
           K    K V  IP  +Q +F  ++F KD  +    H + L       ++IK+      +  
Sbjct: 423 KKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQHF 481

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
           E V  ++ K  + +K  +E   K+ +++ + ++
Sbjct: 482 ENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQ 514


>gi|255021292|ref|ZP_05293340.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969155|gb|EET26669.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus
           ATCC 51756]
          Length = 516

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 99/240 (41%), Gaps = 6/240 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59
           ML+  RK S++W AKI L V+ + F++WG+S  LFS  SG   V  V   K+  + F   
Sbjct: 1   MLDAFRKLSQSWAAKIVLAVIALSFVLWGVSGYLFSNDSGEQVVAKVDGDKISAAIFQQR 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
                   +Q  G    ++ A+       +L+ L+    L      +GL+     +  +I
Sbjct: 61  LHDAREHYAQVFGPEAAAQMAKDPSFAPDVLNGLIDNLLLAHEARKLGLQVPDSALAQKI 120

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
                F  K  KFS   +   L   G+     E +   + +L +   V   +     S  
Sbjct: 121 EGISAFADK-GKFSRAKYQEVLRANGLTPVKFEAMLRDSMLLEQLQAVPQILAVA--SRK 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             + A  +  E R    + +  R     A P++A +  ++++++ +Y  P    + Y+ F
Sbjct: 178 DAESAWSWSQEYRDARVVQIPVRSFLKAATPTDAEVQSYYQQHQSDYALPAQVEVQYVTF 237


>gi|311087368|gb|ADP67448.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           JF99 (Acyrthosiphon pisum)]
 gi|311087867|gb|ADP67946.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           JF98 (Acyrthosiphon pisum)]
          Length = 623

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 98/453 (21%), Positives = 192/453 (42%), Gaps = 58/453 (12%)

Query: 89  ILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           +L  L++   L+Q+ +++  LE +   +   I  SP+F  K+NKFS + +++ L      
Sbjct: 91  VLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIFQ-KNNKFSKERYLNYLTSINST 149

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
             EYI+   K ++  ++    +  +  SN +L + ++   +  S   I+   +      D
Sbjct: 150 NHEYINIIKKKINTENL----IHTISKSNFILKKEEKNIIKLLSQKRII---KKAIVKID 202

Query: 208 PS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
           PS       N     +F+K +DN+  PE  +I+++  ++     KI   N E+   Y +N
Sbjct: 203 PSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFV--ELKTDNFKIHCENKEIYDWYIRN 260

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQG----KSLSDISLGSF 315
             +Y + E R    +   N+++A      L    + F ++A+EQ      S  D  +G  
Sbjct: 261 ITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQSTDPISSKKDGDIGWI 320

Query: 316 SKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV------- 367
           S + IPD +  A+    L KK   + VI     ++I  ++  +        EV       
Sbjct: 321 SIDLIPDEIKHAN----LNKKNQISDVIPFHNEFLIVKLNETQIGTQKKIYEVFDSIKKQ 376

Query: 368 -----KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
                  D+ N+++  K S  +K D  ++E  L                +I +   D+  
Sbjct: 377 IKQKKSLDLYNELK-NKISNNLKNDPGKIERILKEN-------------NILIQETDWFD 422

Query: 423 KDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDRKL 479
           K    K V  IP  +Q +F  ++F KD  +    H + L       ++IK+      +  
Sbjct: 423 KKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQHF 481

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
           E V  ++ K  + +K  +E   K+ +++ + ++
Sbjct: 482 ENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQ 514


>gi|116049755|ref|YP_791438.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313110502|ref|ZP_07796387.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
           aeruginosa 39016]
 gi|115584976|gb|ABJ10991.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310882889|gb|EFQ41483.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
           aeruginosa 39016]
          Length = 621

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/406 (18%), Positives = 168/406 (41%), Gaps = 22/406 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+ V   + G    + +   S+    V    +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L +  L  L+    L Q  +D         +   I 
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYID-HYTKMLSRTDVVGMFVGGMRPSNLLL 179
           ++P F   D KF+ D F      + I +  Y    + +ML +  ++G    G+  +  + 
Sbjct: 121 QTPEFQ-VDGKFNADRF-----DQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVT 174

Query: 180 DQAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           D   + +   E ++ D+  L  +   + +  S   +  ++E +K  +  PE   + Y+  
Sbjct: 175 DNELQSFARLEKQTRDFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVEL 234

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-------- 289
                  ++++  ++L+A Y+K      S +      L+  N K  DE  ++        
Sbjct: 235 KKSSFFDQVKVKQEDLEALYQKEIAN-LSEQRDAAHILIEVNDKVGDEQAKAKIDEIKAR 293

Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           L KG+ F  LA+E  + +   + G    ++   + D +  +++++L K+G+ +  +   +
Sbjct: 294 LAKGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPY 352

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY +  +  ++     S + +K  + ++++     ++  E  K LE
Sbjct: 353 GYHLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLE 398


>gi|254234899|ref|ZP_04928222.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
           C3719]
 gi|296389804|ref|ZP_06879279.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas aeruginosa PAb1]
 gi|126166830|gb|EAZ52341.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
           C3719]
          Length = 621

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/406 (18%), Positives = 168/406 (41%), Gaps = 22/406 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+ V   + G    + +   S+    V    +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L +  L  L+    L Q  +D         +   I 
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYID-HYTKMLSRTDVVGMFVGGMRPSNLLL 179
           ++P F   D KF+ D F      + I +  Y    + +ML +  ++G    G+  +  + 
Sbjct: 121 QTPEFQ-VDGKFNADRF-----DQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVT 174

Query: 180 DQAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           D   + +   E ++ D+  L  +   + +  S   +  ++E +K  +  PE   + Y+  
Sbjct: 175 DNELQSFARLEKQTRDFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVEL 234

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-------- 289
                  ++++  ++L+A Y+K      S +      L+  N K  DE  ++        
Sbjct: 235 KKSSFFDQVKVKQEDLEALYQKEIAN-LSEQRDAAHILIEVNDKVGDEQAKAKIDEIKAR 293

Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           L KG+ F  LA+E  + +   + G    ++   + D +  +++++L K+G+ +  +   +
Sbjct: 294 LAKGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPY 352

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY +  +  ++     S + +K  + ++++     ++  E  K LE
Sbjct: 353 GYHLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLE 398


>gi|21241842|ref|NP_641424.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107222|gb|AAM35960.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 656

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/416 (21%), Positives = 156/416 (37%), Gaps = 56/416 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L +PFL + + ++     G++ V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPAWWKSAPSWW 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100
              L     +I    F    E+AR     ++                 +LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRTRFEQARMQERQRQGEKFDPRSFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158
              ED G+      V   IA  P F   D KFS D + + LA +G   +     D   + 
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177

Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             +  V+   V   G   ++   ++  +   E R V+  +L        A  S+A + QW
Sbjct: 178 SLQQSVIPQAVAESGFATTSEF-ERLLKLMGETRDVELAMLPPPAA-DAAPVSDAQIKQW 235

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           ++ +  ++R PE   I Y+  +              L+  YE  K ++  PE R    ++
Sbjct: 236 YDGHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHIL 295

Query: 277 FPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
                +A                       F +L K       +++ G  L  +  G+  
Sbjct: 296 ISAGTDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEKGTMV 355

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           K +       D++FS+ K G+    I   FGY +  +  +K     SF++V+  +A
Sbjct: 356 KPF------EDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLA 404


>gi|317403066|gb|EFV83601.1| peptidyl-prolyl cis-trans isomerase D [Achromobacter xylosoxidans
           C54]
          Length = 656

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/408 (18%), Positives = 164/408 (40%), Gaps = 21/408 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IR + R W+  I L+++   F + G+      +     + +V  Q +  + F  + 
Sbjct: 1   MFEFIR-SHRRWMQFILLLLIVPSFFLVGIQGYESFMRKEPELATVAGQPISRAEFDQAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L    Q++G   +     +  L + +L+ L++   L     D         +   IA
Sbjct: 60  RNQLEQYRQRLGAQFDPAVIDTPQLREALLNQLINQRLLANVAVDNRFSVSDETLRNTIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     + +FS + +   LA +G++   +     + L+   V+       R    ++ 
Sbjct: 120 AIPEVQ-DNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLEPVGQSARAPAEVVA 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +    + R+V           +    + A +  W++  K   + PE  ++ Y++ +  
Sbjct: 179 SLETALTQQRTVQLRRFAAADFRSQVTVTPADIQAWYDANKQQLQVPEQVQVQYLVLNEA 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AF 287
              + +++ +++L + YE+NK ++  PE R    ++      A E             A 
Sbjct: 239 AATEGVQVKDEDLTSYYEQNKNRFGQPERRRASHIMIEVPAGASEDARKAARAKAEALAT 298

Query: 288 QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           Q+     +F +LA    ++ G + +   LG  +   +    L  +IFS +K    + V+ 
Sbjct: 299 QAAANPAQFAELARKNSQDAGSAANGGDLGWLAPGML-SGPLEKAIFSQSKD-QVSGVVE 356

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              G+ +  V+ I+P+      EVK  I  ++R   A+ +  E   +L
Sbjct: 357 SPSGFHVVKVTEIQPAAIKPLAEVKDQITAEVRKQLAAVRFSEMASQL 404


>gi|21230443|ref|NP_636360.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21112006|gb|AAM40284.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 656

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/418 (20%), Positives = 157/418 (37%), Gaps = 56/418 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L +PFL + + ++     G++ V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100
              L     +I    F    E++R     ++                 +LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158
              ED G+      V   IA  P F   D KFS D + + LA +G   +     D   + 
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-IDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177

Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             +  V+   V   G   +    ++      E R V+  +L        A  S+A + QW
Sbjct: 178 SLQQSVIPQAVAESGFA-TKSEFERLLTLMGETRDVELAMLPEPTA-DTAPVSDAQIKQW 235

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           ++ +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    ++
Sbjct: 236 YDGHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRLASHIL 295

Query: 277 FPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
                +A                       F +L K       +++ G  LS +  G+  
Sbjct: 296 ISAGSDAAAQKAAEEKAAKLAAEAKQPGADFAALAKANSQDPGSKDAGGDLSWVEKGTMV 355

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
           K +       D++F++ K GD    I   FGY +  +  +K     SF++V+  +A +
Sbjct: 356 KPF------EDALFAM-KAGDVVGPIKTEFGYHVIQLREVKGGQGKSFEQVRDQLAAE 406


>gi|114321433|ref|YP_743116.1| hypothetical protein Mlg_2284 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227827|gb|ABI57626.1| hypothetical protein Mlg_2284 [Alkalilimnicola ehrlichii MLHE-1]
          Length = 484

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 97/487 (19%), Positives = 191/487 (39%), Gaps = 70/487 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR A + WVA   ++V+ +PF++ G   + F+      V  V   ++         
Sbjct: 1   MLEAIRSAVKGWVAWAVVIVISLPFIVVG-GYSYFAGDDGRVVAEVEGVEITREQVAERA 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKIL-----DNLVSGATLDQFIEDIGLEADHGRV 115
           +Q+   + +  G +       + G+D+  L     D L+  A L   + D  L      V
Sbjct: 60  RQQQRQLEEFFGDL------GAAGVDESTLRREARDGLIEEALLHVLVTDGNLRVGDRAV 113

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I +  +FH +   FS + +   L+   +      D Y +M+ R  +V  F   +  S
Sbjct: 114 AQRIRQQDIFH-QGGTFSMERYQQLLSANRLTP----DQYEEMVRRDLLVEQFQRAVTGS 168

Query: 176 NLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            L+ D    +      + R + Y+V++    P     S+A +   +E+  + Y AP   R
Sbjct: 169 ALVRDWDTARLAALDRQQRDIHYLVVSADEAPDAV--SDAAVQAHYEENAERYTAPRQVR 226

Query: 232 ISYILFDVHEKE-------KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
           + YI  ++H+ E       +  E++ D     YE       + ++  VE L + +    D
Sbjct: 227 LEYI--ELHQDELAPDDSTRFFELTEDAANVAYEDPDSLQSAADLLGVE-LSYSDWVPED 283

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            + + L                        + +  + + + +D +       +   +  G
Sbjct: 284 GSAEGL------------------------WGRPEVVEAAFSDDVLEFGYNSELIEL--G 317

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
           S   ++  V +++ +  +   EV  +I  ++   +   + +   + LE  +A G  M E+
Sbjct: 318 SGHALLLRVDDVREAEPLGLDEVADEIRRELAREQGRLQARNLGELLEREIAAGAEMAEL 377

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV---ALPDG 461
           + RE      L +    G D +G    A+P   Q++ R F    P+    +V   ++  G
Sbjct: 378 AEREG-----LEVRSAEGLD-RGTLSDAVPT--QVVDRAFRLPRPVDGQPSVGGTSVQGG 429

Query: 462 SYMWVQI 468
            Y  VQ+
Sbjct: 430 DYAVVQV 436


>gi|308389331|gb|ADO31651.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis alpha710]
 gi|325136276|gb|EGC58884.1| hypothetical protein NMBM0579_1013 [Neisseria meningitidis M0579]
 gi|325208178|gb|ADZ03630.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
          Length = 512

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 122/281 (43%), Gaps = 22/281 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+              
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55

Query: 74  VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            + +E+A   G  +  +  +L+  A L Q  + +G+     ++   I   P FH  + KF
Sbjct: 56  -IQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLLGISVSSEQIKQIIVDDPNFHDANGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++
Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E
Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETE 234

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           ++  +E+   +  + E +    L F  +K A E    +KK 
Sbjct: 235 VKNAFEERVARLPANEAK----LSFEQEKAAVENELKMKKA 271


>gi|325202068|gb|ADY97522.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
          Length = 512

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 122/281 (43%), Gaps = 22/281 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+              
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55

Query: 74  VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            + +E+A   G  +  +  +L+  A L Q  + +G+     ++   I   P FH  + KF
Sbjct: 56  -IQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++
Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E
Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETE 234

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           ++  +E+   +  + E +    L F  +K A E    +KK 
Sbjct: 235 VKNAFEERVARLPANEAK----LSFEQEKAAVENELKMKKA 271


>gi|152986261|ref|YP_001348850.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PA7]
 gi|150961419|gb|ABR83444.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PA7]
          Length = 621

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/406 (18%), Positives = 168/406 (41%), Gaps = 22/406 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+ V   + G    + +   S+    V    +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L +  L  L+    L Q  +D         +   I 
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYID-HYTKMLSRTDVVGMFVGGMRPSNLLL 179
           ++P F   D KF+ D F      + I +  Y    + +ML +  ++G    G+  +  + 
Sbjct: 121 QTPEFQ-VDGKFNADRF-----DQVIRQMNYSRLQFRQMLGQEMLIGQLRAGLAGTGFVT 174

Query: 180 DQAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           D   + +   E ++ D+  L  +   + +  +   +  ++E +K  +  PE   + Y+  
Sbjct: 175 DNELQSFARLERQTRDFATLAVKADASKSSVAEDEVKAFYEGHKSEFMTPEQVVVEYVEL 234

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-------- 289
                  ++++  ++L A Y+K      S +      L+  N K +DE  ++        
Sbjct: 235 KKSSFFDQVKVKQEDLDALYQKEIAN-LSEQRDAAHILIEVNDKTSDEQARAKIDEIKAR 293

Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           L KG+ F  LA+E  + +   + G    ++   + D +  +++++L K+G+ +  +   +
Sbjct: 294 LAKGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPY 352

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY +  +  ++     S + +K  + ++++     ++  E  K LE
Sbjct: 353 GYHLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLE 398


>gi|268680048|ref|YP_003304479.1| peptidyl-prolyl cis-trans isomerase D,- like protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618079|gb|ACZ12444.1| putative peptidyl-prolyl cis-trans isomerase D,- like protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 486

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/403 (21%), Positives = 173/403 (42%), Gaps = 56/403 (13%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           W++ I  V     F+ WG  D   +   +++V  VG + +    F +++       +  +
Sbjct: 17  WISTIAFVG--AGFVGWGAYD--LNQDRAASVAKVGNRTISVQEFQSAYASHYNFYNNLL 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +  E+A  +GLDK ++ +L++   L  + +++GL          +  +P F  ++  
Sbjct: 73  QGQLTQEQAEQMGLDKIVMSSLINQTLLLNYADELGLLVSKEETMERLKNNPNFQ-ENGV 131

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ-AKRFYFENR 190
           F+ +++ + L    I   +Y     K +  T +  +F   +  S+  ++  A  F+ E+R
Sbjct: 132 FNKELYYTILKSNRIKPNDYEHELAKEILHTKLENIF--KLPASDKEIEMFASAFFMEDR 189

Query: 191 -SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
            +++ I LN   V A  +   A    ++EK K NY   +    SY L  ++    K    
Sbjct: 190 LAIETISLNANEVSADEEAIKA----YWEKNKANYLTQK----SYTLELLNLPPSKTPFD 241

Query: 250 NDELQAEYEKNKEKYFSPEIRTV------EQLVFP-----NQKEADEAFQSLKKGKKFIQ 298
           +  L+A Y + K  Y   + + +      E+L        ++K A E+F + KKG    +
Sbjct: 242 DKTLEAFYAEEKHNYQHADGKLMLFEEAKEKLAIDLRLKNDKKSALESFLAFKKG----E 297

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL------AKKGDFTPVIHGSFGYVIAH 352
           +   + K + D                 DS+F +      AK     PVI  +  YV+  
Sbjct: 298 INATETKVVYD----------------TDSLFPMDKIQIAAKDEVLKPVIINN-QYVVIR 340

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKV-KEDYKRLEEF 394
           V  IK    +S++  KK+ +N +  T   E + K+ + ++E+F
Sbjct: 341 VKEIKFPEPMSYEMAKKEASNDLLKTLKEEALEKKAHAKVEQF 383


>gi|222056790|ref|YP_002539152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
 gi|221566079|gb|ACM22051.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
          Length = 308

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 11/163 (6%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           E++ +I + ELQ  Y KNKEK+ + E      ++   + EA E  + LK G  F +LA++
Sbjct: 124 EEQAKIGDAELQDFYNKNKEKFRTGEQVRASHILVKTEPEAQEILKQLKAGGNFEELAKK 183

Query: 303 Q---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           Q     +     LG F K   +P+    +++F L K+G  + ++   +GY I  ++  +P
Sbjct: 184 QSIDAAAAKGGDLGWFGKGSMLPE--FENAVFGL-KEGATSGIVQTKYGYHIIKLTGKRP 240

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +      EVK     Q++     EK +E +K+L+E L  G  +
Sbjct: 241 AGVRPLDEVK----EQIKAAILPEKQQEVFKKLKEDLKKGAKV 279


>gi|262278967|ref|ZP_06056752.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259318|gb|EEY78051.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 621

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 113/546 (20%), Positives = 212/546 (38%), Gaps = 71/546 (13%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFIN 58
           +E  R   + W+ K+ L++   P  + G+       + +    +V  Q++      +   
Sbjct: 1   MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           S+K+      Q +  V   E   ++  +  K LD LVS   L Q  E +G+     ++  
Sbjct: 61  SYKE------QYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDTQIEQ 114

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGM 172
            +A+ P    ++ +FS  ++ + L   G+  +  I     DH  KML+ T     F    
Sbjct: 115 MLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSQGLISSLRQDHALKMLTST-----FSDYS 168

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             S + L Q      E R++    +           SN   T ++ K+++ ++      +
Sbjct: 169 LVSKVDLMQIANLQTEQRTLHLASIKLDGYKTGLTASNQEATDYYNKHQNEFKQQASVDV 228

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEAD 284
            Y++       K    +  ELQ  Y K  E       RTV+ ++           QK A 
Sbjct: 229 DYVVVSPSLMAKPAPATEAELQQAYSKFVETQKKDAKRTVKHILITTDARDDAAAQKLAK 288

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPV 341
           E +  ++ G  F Q A +  +  S  + G   + Y P V   +   ++ SL K G  +  
Sbjct: 289 EVYAKIQGGLTFAQAASQFSEDPSSKAKGGLVEAYAPGVFSDAFDKTVVSL-KNGQISQP 347

Query: 342 IHGSFGYVIAHV---SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
           +   +GY I      +N  PSF           A + R+T   EK K         +A  
Sbjct: 348 VKTQYGYHIIEAETQANQIPSFE----------AEKARLTAEVEKNK---------VATV 388

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI---------PY--KEQLLFRVFG-- 445
            S    S  E IV  D   ++   ++VKG +V ++         PY     +  ++F   
Sbjct: 389 YSDTVNSLNETIVGND--SLEAVVQEVKGTKVESLNGVTLATQNPYLSDPNVKIKLFNDD 446

Query: 446 -KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
            K+   +    + L +G  +W+++++   A  + L + + + K      K  + V +K  
Sbjct: 447 VKNGDRNASSNIQLANGDTVWIKVRDYHAAGVKPLAQAMNEAKAKVIDEKARKAVQAKIA 506

Query: 505 QLVLEY 510
            ++ E+
Sbjct: 507 TMLAEF 512


>gi|309781952|ref|ZP_07676683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia sp.
           5_7_47FAA]
 gi|308919296|gb|EFP64962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia sp.
           5_7_47FAA]
          Length = 635

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/392 (16%), Positives = 157/392 (40%), Gaps = 23/392 (5%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           + L+++F  F+ +G+      +  S     V  + +  +      +++   + Q +G   
Sbjct: 4   VLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARVREQTERLRQMLGAQY 63

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL---FHGKDNKF 132
           +  +     + + +LD ++    L   +    L   + ++   I + P        D  F
Sbjct: 64  DPRQFEGPQMRRDVLDGIIQQRVLANEVTRANLTISNEKIRDTILQIPAVAALRKPDGSF 123

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
             + +V  L+ + +  ++   +    LS+  +    V        L+D+  +   + R V
Sbjct: 124 DQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKSLVDRLIQVRDQQREV 183

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
             ++       A  +  +  +  +++ ++  +  PE  +  Y++F   E  K+I ++ ++
Sbjct: 184 QALLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVFSGEEMMKQIPVTPEQ 243

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEAFQSL-----------KKGKKFIQL 299
           L+  Y++N  ++ + E R    ++   P+  +  +   +            K    F  L
Sbjct: 244 LKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEEVLAEVRKNPASFADL 303

Query: 300 AE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           A+    + G +     LG   K   +P     +++F+L + GD + V+   FG+ I  + 
Sbjct: 304 AKKYSGDPGSAAQGGELGFLGKGATVP--PFENALFALKQPGDISDVVQSDFGFHIIKLE 361

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            +K       + VK ++  ++R   A++K  E
Sbjct: 362 EVKGGGVQPLEAVKPELERELRTQLANKKYSE 393


>gi|239998983|ref|ZP_04718907.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           35/02]
 gi|268594831|ref|ZP_06128998.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268548220|gb|EEZ43638.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|317164277|gb|ADV07818.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 512

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/246 (19%), Positives = 106/246 (43%), Gaps = 16/246 (6%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ +            
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQ------------ 57

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             N +          +  +L+  A L Q  + +G+     ++   I   P FH  + KFS
Sbjct: 58  --NEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEK 259
           +  +E+
Sbjct: 236 KNAFEE 241


>gi|253698852|ref|YP_003020041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
 gi|251773702|gb|ACT16283.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
          Length = 336

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 11/157 (7%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           E+   IS+ +++A YEKNKEK+ S        ++  ++ EA +    LK G  F +LA++
Sbjct: 142 EESANISDADMKAFYEKNKEKFQSGAQVRASHILVKSEAEAKDVQNQLKSGASFEELAKK 201

Query: 303 Q---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
               G +     LG FSK   IPD       F L K+G+ + ++   FGY I   +  +P
Sbjct: 202 HSIDGAAQKGGDLGWFSKGSMIPD--FEKVAFGL-KEGETSGIVKTQFGYHIIKKTGDRP 258

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           +   SF++VK    +Q++     E+ +E +K L++ L
Sbjct: 259 AGARSFEDVK----DQIKAAMVPERQQETFKNLKDEL 291


>gi|194098675|ref|YP_002001737.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           NCCP11945]
 gi|240016542|ref|ZP_04723082.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           FA6140]
 gi|240112969|ref|ZP_04727459.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           MS11]
 gi|240118019|ref|ZP_04732081.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           PID1]
 gi|240123573|ref|ZP_04736529.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           PID332]
 gi|240125755|ref|ZP_04738641.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240128277|ref|ZP_04740938.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|260440465|ref|ZP_05794281.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           DGI2]
 gi|268599050|ref|ZP_06133217.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11]
 gi|268603732|ref|ZP_06137899.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1]
 gi|268682203|ref|ZP_06149065.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332]
 gi|268684354|ref|ZP_06151216.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686675|ref|ZP_06153537.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043765|ref|ZP_06569481.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|193933965|gb|ACF29789.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           NCCP11945]
 gi|268583181|gb|EEZ47857.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11]
 gi|268587863|gb|EEZ52539.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1]
 gi|268622487|gb|EEZ54887.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332]
 gi|268624638|gb|EEZ57038.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268626959|gb|EEZ59359.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012228|gb|EFE04217.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 512

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/246 (19%), Positives = 106/246 (43%), Gaps = 16/246 (6%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ +            
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQ------------ 57

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             N +          +  +L+  A L Q  + +G+     ++   I   P FH  + KFS
Sbjct: 58  --NEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEK 259
           +  +E+
Sbjct: 236 KNAFEE 241


>gi|240080666|ref|ZP_04725209.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           FA19]
 gi|268596788|ref|ZP_06130955.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268550576|gb|EEZ45595.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
          Length = 512

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/246 (19%), Positives = 106/246 (43%), Gaps = 16/246 (6%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ +            
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQ------------ 57

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             N +          +  +L+  A L Q  + +G+     ++   I   P FH  + KFS
Sbjct: 58  --NEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEK 259
           +  +E+
Sbjct: 236 KNAFEE 241


>gi|59801181|ref|YP_207893.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           FA 1090]
 gi|240115723|ref|ZP_04729785.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           PID18]
 gi|268601403|ref|ZP_06135570.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
 gi|59718076|gb|AAW89481.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           FA 1090]
 gi|268585534|gb|EEZ50210.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
          Length = 512

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/246 (19%), Positives = 106/246 (43%), Gaps = 16/246 (6%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ +            
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQ------------ 57

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             N +          +  +L+  A L Q  + +G+     ++   I   P FH  + KFS
Sbjct: 58  --NEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEK 259
           +  +E+
Sbjct: 236 KNAFEE 241


>gi|219682383|ref|YP_002468767.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|219622116|gb|ACL30272.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|311086780|gb|ADP66861.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           TLW03 (Acyrthosiphon pisum)]
          Length = 623

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 98/453 (21%), Positives = 191/453 (42%), Gaps = 58/453 (12%)

Query: 89  ILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           +L  L++   L+Q+ +++  LE +   +   I  SP+F  K+NKFS + +++ L      
Sbjct: 91  VLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIFQ-KNNKFSKERYLNYLTSINST 149

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
             EYI+   K ++  ++    +  +  SN +L + ++   +  S   I+   +      D
Sbjct: 150 NHEYINIIKKKINTENL----IHTISKSNFILKKEEKNIIKLLSQKRII---KKAIVKID 202

Query: 208 PS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
           PS       N     +F+K +DN+  PE  +I+++  ++     KI   N E+   Y +N
Sbjct: 203 PSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFV--ELKTDNFKIHCENKEIYDWYIRN 260

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQG----KSLSDISLGSF 315
             +Y + E R    +   N+++A      L    + F ++A+EQ      S  D  +G  
Sbjct: 261 ITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQSTDPISSKKDGDIGWI 320

Query: 316 SKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV------- 367
           S + IPD +  A+    L KK   + VI     ++I  +   +        EV       
Sbjct: 321 SIDLIPDEIKHAN----LNKKNQISDVIPFHNEFLIVKLDETQIGTQKKIYEVFDSIKKQ 376

Query: 368 -----KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
                  D+ N+++  K S  +K D  ++E  L                +I +   D+  
Sbjct: 377 IKQKKSLDLYNELK-NKISNNLKNDPGKIERILKEN-------------NILIQETDWFD 422

Query: 423 KDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDRKL 479
           K    K V  IP  +Q +F  ++F KD  +    H + L       ++IK+      +  
Sbjct: 423 KKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQHF 481

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
           E V  ++ K  + +K  +E   K+ +++ + ++
Sbjct: 482 ENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQ 514


>gi|154148500|ref|YP_001406386.1| putative peptidyl-prolyl cis-trans isomerase D-like protein
           [Campylobacter hominis ATCC BAA-381]
 gi|153804509|gb|ABS51516.1| putative peptidyl-prolyl cis-trans isomerase D-like protein
           [Campylobacter hominis ATCC BAA-381]
          Length = 487

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 134/320 (41%), Gaps = 52/320 (16%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           W++ I  V     F+ WG  D   + S S++V  VG   +    F N + +    +    
Sbjct: 17  WISTIAFVG--AGFVGWGAYD--LNKSRSTSVAKVGDTAISIKEFQNKYSEVYNYLKSIS 72

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
                 E+A+ + LD+  ++ L+  A L  F +D+G+ A    V  EI  S  F   D K
Sbjct: 73  DGKFTDEQAKKMHLDEMAINALIQDAILLNFAKDLGINASDEEVAREIINSDNFKT-DGK 131

Query: 132 FSHDVFVSRLAREGINEKEY---------IDHYTKMLS----------------RTDVVG 166
           FS  ++ + +   G+++ EY         +D   K +S                  D V 
Sbjct: 132 FSKKLYENAMKNAGLSQNEYEKELKKVIILDKLKKAISIKPNADDIEMLTASEFMQDKVE 191

Query: 167 MFVGGMRPSNLLL--DQAKRFYFENRSVDYIVLNNRHVPA-IADPSN-----AVLTQWFE 218
           + +     S +    D+ K F+ +N+S  Y+      + A   +P N       L ++FE
Sbjct: 192 IAIVDQNVSTITFNDDELKDFWEKNKS-KYLTQKTYEMDAYFVEPENKNVDEKTLREFFE 250

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK--EKYFS---PEIRTVE 273
           K +D YR    K +S+       +E    + ND L  ++ K++  +KY      +I T E
Sbjct: 251 KNRDLYRNENDKLMSF-------EEANASVLNDYL-TDFNKDEAIKKYLDVKKGKIFTNE 302

Query: 274 QLVFPNQKEADEAFQSLKKG 293
           +LV  +  E  +  Q++K G
Sbjct: 303 KLVLNDNDEIIKNLQNMKIG 322


>gi|240014107|ref|ZP_04721020.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           DGI18]
 gi|240121669|ref|ZP_04734631.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           PID24-1]
 gi|254493775|ref|ZP_05106946.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291]
 gi|226512815|gb|EEH62160.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291]
          Length = 512

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 107/246 (43%), Gaps = 16/246 (6%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQNE-----QADG- 63

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                          +  +L+  A L Q  + +G+     ++   I   P FH  + KFS
Sbjct: 64  --------GSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEK 259
           +  +E+
Sbjct: 236 KNAFEE 241


>gi|94969792|ref|YP_591840.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551842|gb|ABF41766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 654

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 91/424 (21%), Positives = 167/424 (39%), Gaps = 47/424 (11%)

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRIS 233
           NL+  Q  +  F     DY  L+   +    +PS+A +  W+E +KD ++   PE ++I 
Sbjct: 185 NLVRQQQTKVKF-----DYASLSLADIEKGINPSDAEMKAWYEAHKDQFKDSLPEKRKIK 239

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEA------ 286
           Y+   +  K   ++ S+ ++Q  Y  +K ++  P+  TV+  LV   Q    +       
Sbjct: 240 YVSV-IGSKLPGVQPSDADIQKYYNDHKTEFTIPQTATVQHILVMVPQGADAKTDAAAKA 298

Query: 287 -----FQSLKKGKKFIQLAEE--QGKSLSDISL-----GSFSKEYIPDVSLADSIFSLAK 334
                 +  + G  F +LA++    K   D +L     G+  KE+  D SLA       K
Sbjct: 299 KAEDYLKQARGGANFGELAKKYSDDKGTGDSTLEVTPQGNLVKEF-KDASLA------GK 351

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            GD    +   FGY I  +   +P+   S  EVK  IA    I    +K  +  ++  + 
Sbjct: 352 TGDILGPVKTQFGYHIIKIQKNEPAGARSLDEVKSQIA----IVMGGQKAADAAQKAADN 407

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           L     +  + +        +   DF     +   +  I    Q +  VF  +     D 
Sbjct: 408 LRNSARVQGLDKAAAAAGDTVETTDFV---TQSSLLPGIGQAPQFMNAVFKANAKSGAD- 463

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
            VA   G Y   ++ +  P      E+    V++ +K  K    +  KA +L  + ++  
Sbjct: 464 -VAPITGGYAVYEVTDVQPPATPTFEQAKAQVEQQFKAGKAQTLIVQKAQELA-DRARTE 521

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS--QVFSGPVEMVKCFPIENGLSYV 572
            + +   K  G ++ T+  + +           G S   VF+G    +   P++ G + +
Sbjct: 522 HDLKKAAKEAGVTVKTSEMVTQSSQVPDVGSLSGPSFTAVFAGKTGDI-IGPVQGGRNAI 580

Query: 573 VFKV 576
           V  V
Sbjct: 581 VIAV 584


>gi|254252159|ref|ZP_04945477.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
 gi|124894768|gb|EAY68648.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
          Length = 645

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/363 (18%), Positives = 142/363 (39%), Gaps = 32/363 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V +V   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAVNGHKITRVEFDAAFRQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D     + +   L+ +G+  ++Y +   
Sbjct: 99  ADETQRLHLTASDNAVREALMSDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L+   +    +        L  +      + R V  +VL      A   P++A L  +
Sbjct: 159 YSLALQQIPASIISSAFTPKSLAQRLSELAAQQREVQSLVLKTSDYAAKVQPTDAQLAAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271
           ++ +K ++  P    I Y+++         + ++ +++  Y+ N   + +  ++R     
Sbjct: 219 YDAHKQSFATPATATIQYLVYSPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIF 278

Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                              EQL+   +   D+  Q  +K  +    A + G  L  I+ G
Sbjct: 279 IAAASSASAADKAAAKAKAEQLLAEVKAHPDQFAQIAEKNSQDAPSAAK-GGDLGFITRG 337

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S +     D    D+ F+L K+G+ + V+    G+ I   + +KP+    F EVK  IA 
Sbjct: 338 STAGGKAFD----DAAFAL-KQGEVSGVVESDLGFHILKATEVKPAVLKPFAEVKDQIAA 392

Query: 374 QMR 376
            ++
Sbjct: 393 DLK 395


>gi|325982743|ref|YP_004295145.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
 gi|325532262|gb|ADZ26983.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
          Length = 627

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 134/674 (19%), Positives = 278/674 (41%), Gaps = 102/674 (15%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGR-QKVPFSSFINS 59
           M +++ +  R  V ++ L +  +PF+ WG+    +   GS   V+V   +++    +  +
Sbjct: 1   MFDLVNRKKR--VVQVILGLAVLPFMFWGVES--YRNDGSEGYVAVVEGEEISRREYEQA 56

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +     +   +G   +S    +  +   +L+ L+    L Q     G      ++   I
Sbjct: 57  LRDHHERMRAMLGANFDSAMLDTSEVRSSVLERLIQQRLLYQEAVKNGFVVLDSQLIKTI 116

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
                F  K+NKFS   +   L  +G+               T V+  F   +R + LLL
Sbjct: 117 QDVQAFQ-KNNKFSKQQYEELLRNQGL---------------TPVI--FESRVR-NELLL 157

Query: 180 DQAKRFYFEN--------RSVDYIVLNNRHVP----------AIADPSNAVLTQWFEKYK 221
            Q    Y EN          V Y+    R +           + A P  A ++ ++E++K
Sbjct: 158 QQLLDGYSENAITPRTTTERVQYLSEVRREISQSKITPDQFLSQAIPEEADISAYYEQHK 217

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
            ++  PE  ++ Y++  + +  K   +S++ +   + +++ ++   E R    ++     
Sbjct: 218 TDFDLPERAKVEYLVLSLEKVAKNEFVSDEAINTYFLEHQSEFGQSEERKASHILISVSP 277

Query: 282 EADEAFQSLKKGK-------------KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVS 324
           +A E  + + + K             +F ++A+E     G ++    LG F++  +   S
Sbjct: 278 DAPEEEKQMAREKAKRILEQVKQNPDQFAEIAKEHSDDPGSAMRGGDLGFFARGVMVK-S 336

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE-- 382
             D IFS+ +  + + ++   FG  I  ++ IK       +EV++ I N +++       
Sbjct: 337 FEDEIFSM-QLDEISDIVETDFGLHIIKLTAIKEERHPDLEEVREQIENTLKVEMVESVF 395

Query: 383 -KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
            ++ ED+  +      G S+   + + +++   +   D+  KD K     AI   E LL 
Sbjct: 396 GEIVEDFSNV--VYEQGESLQAAAEKFELI---IEKSDWITKDSKE---PAILANENLLS 447

Query: 442 RVFGKDDPLSKDHTVAL---PDGSYMWVQIKESIPARDRKL----EEVLTDVKKDWKTVK 494
            +F  +   +  +T A+   PD +++  +I E  PA  + L    +E++  +KK+     
Sbjct: 448 AIFSDEVISNNRNTEAIEVNPD-TFVSARIIEYKPATSQSLAVVKDEIVEKLKKEMAVSM 506

Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE--NKFFGYDGISQV 552
              E   K  +L     + G+   D+  +  A L++  Q   +D+E     F     ++V
Sbjct: 507 AVAEGQEKLVRL-----QAGEVLDDVAWD-DAQLISYMQPQGLDHEVLRAIFR----AEV 556

Query: 553 FSGPVEMVKCFPIENG-----LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
              PV +    P E G     +S V+   ++ K  P    + F   L QM+ ++ + S +
Sbjct: 557 DELPVYVGAVKP-EGGFNLIRISKVIEPDSDEKTPP----ENFAKQLQQMITQEEISSYL 611

Query: 608 AYLKSQYSVTVHDN 621
           A ++ +Y V +  N
Sbjct: 612 AAIRQRYDVKIIQN 625


>gi|254785729|ref|YP_003073158.1| peptidyl-prolyl cis-trans isomerase [Teredinibacter turnerae T7901]
 gi|237683903|gb|ACR11167.1| putative PPIC-type PPIASE domain protein, peptidyl-prolyl cis-trans
           isomerase [Teredinibacter turnerae T7901]
          Length = 624

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 146/339 (43%), Gaps = 29/339 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFV-PFLIWGLSDA-LFSVSGSSTVVSVGRQ--KVPFSSF 56
           ML+ +R   +  +  + +++ F+ P +I G+  + L SV+G+   V  GR   K   S  
Sbjct: 3   MLQSVRDNLKGTIVSVIVILFFILPMVITGVGSSFLGSVAGTDAAVVDGRSITKKELSRE 62

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           I   KQ L  ++Q+ G   +++  +   L + +L+ L   A +    E  G+      + 
Sbjct: 63  IYMQKQRL--LAQQ-GVDPSADYLKDENLAQPVLERLTRKAAVLAAAEKGGMAVSEKSIN 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
           G I     F   D KFS   + S LAR G+    Y     + +    ++G    G+  S+
Sbjct: 120 GAIVGQEEFK-VDGKFSSQQYRSLLARVGLTPAAYKAATAEEM----MLGQLNKGLELSS 174

Query: 177 LLLDQAKR----FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
            + ++ K        E RS   + +    +    + ++A +  +++  +  +R PE   +
Sbjct: 175 FVTEKEKSEIIAIINEKRSFFTVKIPADDLADSIEVTDAEIAAYYQANEAEFREPEKLSV 234

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVFPNQKEA--DEAFQS 289
            YI   V+     + +   +++++YE+  E +  +PE+ TV  ++      A   E    
Sbjct: 235 DYIELSVNSIAATVTVDEADVRSQYEQEAESFDATPEL-TVAHILLEEDSSAKLTEVQAK 293

Query: 290 LKKGKKFIQLAE---------EQGKSLSDISLGSFSKEY 319
           L  G +F  +A+         +QG  L  +  G+F + +
Sbjct: 294 LAAGDEFADVAKAYSDDAGSRDQGGELGVLVAGAFPEAF 332


>gi|325914922|ref|ZP_08177254.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538815|gb|EGD10479.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 685

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 156/422 (36%), Gaps = 64/422 (15%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L +PFL + + ++     G++ V  V      + S    W
Sbjct: 30  MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPTWW 88

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100
              L     +I    F    E+AR     ++                 +LD LV    + 
Sbjct: 89  PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 148

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158
              ED G+      V   I     F   D KFS D + + LA +G   +     D   + 
Sbjct: 149 LGAEDAGIVIGDATVRDYITNIQAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 206

Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA--IADPSNAVLT 214
             +  V+   V   G   +    ++  +   E R V+  +L     PA   A  S+A + 
Sbjct: 207 SLQQSVIPQAVAESGFA-TKTEFERLLKLMGETRDVELAMLP---APAADTAPVSDAQIK 262

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           QW++ +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    
Sbjct: 263 QWYDTHAQDFRQPETVSIEYVELNAATMPPATAADEATLRKRYEEEKARFVEPDQRLASH 322

Query: 275 LVFP----------------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           ++                         Q  AD  F +L K       +++ G  L  +  
Sbjct: 323 ILITAGSDAAAQKAAEAKAAKLAADAKQPGAD--FAALAKANSQDPGSKDAGGDLGWVEK 380

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           G+  K +       D++FS+ K GD    I   FGY +  +  +K     SF++V+   A
Sbjct: 381 GTMVKPF------EDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQFA 433

Query: 373 NQ 374
            +
Sbjct: 434 AE 435


>gi|322419880|ref|YP_004199103.1| hypothetical protein GM18_2369 [Geobacter sp. M18]
 gi|320126267|gb|ADW13827.1| hypothetical protein GM18_2369 [Geobacter sp. M18]
          Length = 525

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/244 (19%), Positives = 107/244 (43%), Gaps = 10/244 (4%)

Query: 25  FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
           FL+WG   +       S   +V   K+    F  S+ +  G+  Q  G  +  E  + +G
Sbjct: 30  FLVWGKGGSDGQGG-KSYAATVNGTKISLDEFQKSYYRTRGLYEQIYGRSLTPEMEKQMG 88

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
           + K  +++LV    +    + +GL+A    V  EIA+ P F  K+  F   ++   L   
Sbjct: 89  IKKLTINSLVDNVLIHAEAKKMGLKASKEEVAAEIAKIPAFQ-KNGAFDFGIYQQTLKAN 147

Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS----VDYIVLNNR 200
            I  K++ +   + +    ++      ++ +  + D   +  F+ +     + Y+  +  
Sbjct: 148 RITPKDFEESQEQEM----LLQKARNKVKDAAAVTDAEVKAAFKKQKDKIDLAYVSFSPA 203

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
            V      ++  LT + + +++ ++ PE   ++Y L    +   K+ ++ +E+Q  Y+KN
Sbjct: 204 DVKGSIKLTDQELTSYLQDHQNEFKTPEQVSVAYALVSPAQFAAKVSVTPEEVQTYYQKN 263

Query: 261 KEKY 264
            ++Y
Sbjct: 264 IDRY 267


>gi|261401210|ref|ZP_05987335.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica
           ATCC 23970]
 gi|269208789|gb|EEZ75244.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica
           ATCC 23970]
          Length = 512

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/247 (20%), Positives = 107/247 (43%), Gaps = 18/247 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S A  S  G+  +V VG +K+                 Q +  
Sbjct: 12  AQVLLGLIALTFVGFGVSTA--SRPGADYIVQVGDEKIS---------------EQSLNA 54

Query: 74  VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            V +E+A      +  +  +L+  A L Q  + +G+     ++   I   P FH    KF
Sbjct: 55  AVQNEQADGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDAGGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++
Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E
Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQAVSETE 234

Query: 253 LQAEYEK 259
           ++  YE+
Sbjct: 235 VKNAYEE 241


>gi|304387500|ref|ZP_07369689.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC
           13091]
 gi|304338387|gb|EFM04508.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC
           13091]
          Length = 512

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 109/246 (44%), Gaps = 16/246 (6%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A+I L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+      M +++ G 
Sbjct: 12  AQILLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA------MQNEQAGG 63

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
              S  A        +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 64  GSPSRDA--------VFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIHDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEK 259
           +  YE+
Sbjct: 236 KNVYEE 241


>gi|254480567|ref|ZP_05093814.1| SurA N-terminal domain family protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039150|gb|EEB79810.1| SurA N-terminal domain family protein [marine gamma proteobacterium
           HTCC2148]
          Length = 626

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 108/250 (43%), Gaps = 32/250 (12%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP--FSSFIN 58
           ML+ IRK S+  +AKI + ++ V F  +G+   L    GS+     G +  P      +N
Sbjct: 1   MLQDIRKNSQGTLAKIIVGIIVVAFAGFGIESILLGGGGSAVAEVNGEEITPQELQQAVN 60

Query: 59  SWKQEL-GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + K++L  M+ + +   +  ++     L ++ +  L+S   L Q  +D+GL     +V  
Sbjct: 61  NQKRQLISMMGENLDPAMLDDQL----LSQQAMQTLISRKLLVQSADDMGLTVSDTQVGA 116

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV-----VGMFVGGM 172
            I     F   D +FS +++ +RL   G         +T +L +T +     VG    G+
Sbjct: 117 LIGSMEQFQ-LDGQFSPELYRARLGEAG---------FTPLLFKTTLTDDIKVGQVRSGL 166

Query: 173 RPSNLL----LDQAKRFYFENRSVDYIVL---NNRHVPAIADPSNAVLTQWFEKYKDNYR 225
             S       L+   R   E R + YI +    +     I+DP    + Q++    D++ 
Sbjct: 167 AGSEFATPGELELNARIVGEQRDLRYITIPLETHASEAVISDPQ---IQQYYADNSDSFL 223

Query: 226 APEYKRISYI 235
           + E   + YI
Sbjct: 224 SEEAVELDYI 233


>gi|187928946|ref|YP_001899433.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12J]
 gi|187725836|gb|ACD27001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12J]
          Length = 646

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/407 (15%), Positives = 165/407 (40%), Gaps = 24/407 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  + L+++F  F+ +G+      +  S     V  + +  +      
Sbjct: 1   MLDFVR-THRRLMFLVLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + Q +G   +  +     + + +LD ++    L   +    L   + ++   I 
Sbjct: 60  REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVLANEVVRANLTISNEKIRDTIL 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + P        D  F  + +V  L+ + +  ++   +    LS+  +    V        
Sbjct: 120 QIPAVAALRKPDGSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L+++  +   + R V  ++       A  +  +  +  +++ ++  +  PE  +  Y++F
Sbjct: 180 LVERLIQVRDQQREVQTLLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVF 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEAFQSL----- 290
              E  K+I ++ ++++  Y++N  ++ + E R    ++   P+  +  +   +      
Sbjct: 240 SGEEMMKQIPVTPEQIKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEE 299

Query: 291 ------KKGKKFIQLAE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFT 339
                 K    F +LA+    + G +     LG   K   +P     +++F+L + GD +
Sbjct: 300 VLAEVRKNPASFAELAKKYSGDPGSAAQGGELGFLGKGATVP--PFENALFALKQPGDIS 357

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            V+   FG+ I  +  +K       + VK ++  ++R   A++K  E
Sbjct: 358 DVVQSDFGFHIIKLEEVKGGGVQPLEAVKPELERELRTQLANKKYSE 404


>gi|58580660|ref|YP_199676.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425254|gb|AAW74291.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 675

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 157/417 (37%), Gaps = 58/417 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L +PFL + + ++     G++ V  V      + S  + W
Sbjct: 20  MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 78

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100
              L     +I    F    E+AR     ++                 +LD LV    + 
Sbjct: 79  PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 138

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK---EYIDHYTK 157
              ED G+      V   IA    F   D KFS D + + LA +G   +   ++      
Sbjct: 139 LGAEDAGIVIGDASVRDYIANIQAFQ-VDGKFSPDKYRAALA-QGTPPRTPAQFDALVRD 196

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI--ADPSNAVLTQ 215
            L ++ +          +    ++  +   E R V+  +L     PA+  A  S+A + Q
Sbjct: 197 SLQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPP---PAMDTAPVSDAQIKQ 253

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           W++ +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    +
Sbjct: 254 WYDGHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHI 313

Query: 276 VFPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
           +     +A                       F +L K       +++ G  L  +  G+ 
Sbjct: 314 LISAGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTM 373

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
            K +       D++FS+ K GD    I   FGY +  +  +K     SF++V+  +A
Sbjct: 374 VKPF------EDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDKLA 423


>gi|330963316|gb|EGH63576.1| periplasmic folding chaperone [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 627

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 175/420 (41%), Gaps = 44/420 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDIT----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112
            Q + M  +++   +  +  +      LD+K+L       L+    L Q   D       
Sbjct: 57  SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSD 116

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             +  ++ ++P F   D KFS D F   + + G +  ++     +ML +  ++G    G+
Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQF----RQMLGQEMLIGQVRAGV 171

Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225
             S  + D Q   F   E ++ D+  L    +PA  DPS   +T       ++++   + 
Sbjct: 172 AGSAFVTDAQVDAFARLEKQTRDFASLT---LPA--DPSAVKVTDDEVKAHYDQHAKEFM 226

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
           +PE   + YI         K+ + +D+LQA Y+K      S + R    L+  N K  DE
Sbjct: 227 SPEQVVLDYIELKKSSFFDKVTVKDDDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDE 285

Query: 286 AF--------QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
                     Q L KG+ F  LA+E     G S     LG F+ + + D +  +++++L 
Sbjct: 286 QAKAKVEEIQQRLAKGESFAALAKEFSQDPGSSSKGGDLG-FAGKGVYDPAFEEALYALN 344

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           K     PV    FG+ +  +  ++     +F  +K+ ++N ++     +K  E  K+LE+
Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLED 403


>gi|15677110|ref|NP_274262.1| peptidyl-prolyl cis-trans isomerase-related protein [Neisseria
           meningitidis MC58]
 gi|7226478|gb|AAF41619.1| peptidyl-prolyl cis-trans isomerase-related protein [Neisseria
           meningitidis MC58]
 gi|316985097|gb|EFV64050.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis H44/76]
 gi|325140532|gb|EGC63053.1| hypothetical protein NMBCU385_0927 [Neisseria meningitidis CU385]
 gi|325200131|gb|ADY95586.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
          Length = 512

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/247 (19%), Positives = 109/247 (44%), Gaps = 18/247 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+              
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55

Query: 74  VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            + +E+A   G  +  +  +L+  A L Q  + +G+     ++   I   P FH  + KF
Sbjct: 56  -IQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++
Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E
Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETE 234

Query: 253 LQAEYEK 259
           ++  +E+
Sbjct: 235 VKNAFEE 241


>gi|84622593|ref|YP_449965.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84366533|dbj|BAE67691.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 656

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 157/417 (37%), Gaps = 58/417 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L +PFL + + ++     G++ V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100
              L     +I    F    E+AR     ++                 +LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK---EYIDHYTK 157
              ED G+      V   IA    F   D KFS D + + LA +G   +   ++      
Sbjct: 120 LGAEDAGIVIGDASVRDYIANIQAFQ-VDGKFSPDKYRAALA-QGTPPRTPAQFDALVRD 177

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI--ADPSNAVLTQ 215
            L ++ +          +    ++  +   E R V+  +L     PA+  A  S+A + Q
Sbjct: 178 SLQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPP---PAMDTAPVSDAQIKQ 234

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           W++ +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    +
Sbjct: 235 WYDGHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHI 294

Query: 276 VFPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
           +     +A                       F +L K       +++ G  L  +  G+ 
Sbjct: 295 LISAGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTM 354

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
            K +       D++FS+ K GD    I   FGY +  +  +K     SF++V+  +A
Sbjct: 355 VKPF------EDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDKLA 404


>gi|298504157|gb|ADI82880.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type
           [Geobacter sulfurreducens KN400]
          Length = 313

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 10/155 (6%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           E+++++S++EL+  Y++NK+K+ S        ++  ++K A E  + LK G  F +LA++
Sbjct: 126 EEQVQVSDEELKKFYDQNKDKFKSGAQIKASHILVRDEKLAQEIVKELKGGANFEELAKK 185

Query: 303 Q---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
                 +     LG FSK   +P+       F L K+G+ + ++   FGY I  V+  +P
Sbjct: 186 HSIDSAAAKGGDLGWFSKGNMVPE--FEKVAFGL-KEGETSGIVRTQFGYHIIKVTGKRP 242

Query: 359 SFTVSFQEVKKDIANQMRITKASE---KVKEDYKR 390
           +   +F+EVK  I   +   K  E   K+KED K+
Sbjct: 243 AGERTFEEVKDQIKAAVLPGKQQEVFQKLKEDIKK 277


>gi|39995127|ref|NP_951078.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39981889|gb|AAR33351.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
          Length = 313

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 10/155 (6%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           E+++++S++EL+  Y++NK+K+ S        ++  ++K A E  + LK G  F +LA++
Sbjct: 126 EEQVQVSDEELKKFYDQNKDKFKSGAQIKASHILVRDEKLAQEIVKELKGGANFEELAKK 185

Query: 303 Q---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
                 +     LG FSK   +P+       F L K+G+ + ++   FGY I  V+  +P
Sbjct: 186 HSIDSAAAKGGDLGWFSKGNMVPE--FEKVAFGL-KEGETSGIVRTQFGYHIIKVTGKRP 242

Query: 359 SFTVSFQEVKKDIANQMRITKASE---KVKEDYKR 390
           +   +F+EVK  I   +   K  E   K+KED K+
Sbjct: 243 AGERTFEEVKDQIKAAVLPGKQQEVFQKLKEDIKK 277


>gi|330959391|gb|EGH59651.1| periplasmic folding chaperone [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 627

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/415 (20%), Positives = 175/415 (42%), Gaps = 34/415 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDIS----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112
            Q + M  +++   ++ +  +      LD+K+L       L+    L Q   D       
Sbjct: 57  SQAVDMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSE 116

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             +  ++ ++P F   D KFS D F   + + G +  ++     +ML +  ++G    G+
Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLIGQVRAGV 171

Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
             S  + D Q + F   E ++ D+  L     PA    ++  +   ++++   + +PE  
Sbjct: 172 AGSAFVTDAQVEAFARLEKQTRDFASLTLPADPAAVKVTDDEIKAHYDQHAKEFMSPEQV 231

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--------E 282
            + YI         K+++ +++LQA Y+K      + + R    L+  N K        +
Sbjct: 232 VLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LAEQRRAAHILIEVNDKLNEEQAKAK 290

Query: 283 ADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
            +E  Q L KG+ F  LA+E     G S     LG ++ + + D +  D++++L K    
Sbjct: 291 IEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLG-YAGKGVYDPAFEDALYALNKDQVS 349

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            PV    FG+ +  +  ++     +F  +K  + N ++  +  +K  E  K+LE+
Sbjct: 350 QPV-RTDFGWHLIKLLGVEAPSVPTFASLKDKLTNDLKSQQVEQKFVEVTKQLED 403


>gi|167627763|ref|YP_001678263.1| hypothetical protein Fphi_1536 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597764|gb|ABZ87762.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 477

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 27/223 (12%)

Query: 97  ATLDQFIEDIGLEADHGR---------VWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           A LDQ I    + AD  R         +   I  +P+F  KD KFS D     +      
Sbjct: 72  AVLDQMINQYLILADAQRHNIVVSKLALQSAIFTNPIFFDKDGKFSADKLKQVV------ 125

Query: 148 EKEYI---DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR----FYFENRSVDYIVLNNR 200
             EYI   +   ++LS+     M    +  + +  D  K+     Y  N+ ++Y+ L+  
Sbjct: 126 --EYIGGMNRLEQILSQNIQATMIPKTIADTVITTDYEKKQLASIYLVNKKIEYLKLSPV 183

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
              +   PS   L  ++  +K++Y  P  K ISY +    +   K  I+NDELQ  YE +
Sbjct: 184 DFQSQVKPSQQDLESYYNAHKNDYINPAQKNISYFIISKEDFVSKNNINNDELQEYYETH 243

Query: 261 KE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
           +E  K F    +   Q +  N++ A E F +  +    ++ AE
Sbjct: 244 RELFKDFDNNTKASIQKIIQNRR-ALEQFNNYSQNIDSVKFAE 285


>gi|166710933|ref|ZP_02242140.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 656

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 157/417 (37%), Gaps = 58/417 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L +PFL + + ++     G++ V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59

Query: 61  KQELGMISQKIG---FVVNSERAR-------SVGLDKK----------ILDNLVSGATLD 100
              L     +I    F    E+AR           D +          +LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERKRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158
              ED G+      V   IA    F   D KFS D + + LA +G   +     D   + 
Sbjct: 120 LGAEDAGIVIGDATVREYIANIQAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177

Query: 159 LSRTDVVGMFVGGMR-PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI--ADPSNAVLTQ 215
             +  V+   V      +    ++  +   E R V+  +L     PA+  A  S+A + Q
Sbjct: 178 SLQQSVIPQAVADSGFATKSEFERLLKLMGETRDVELAMLPP---PAMDTAPVSDAQIKQ 234

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           W++ +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    +
Sbjct: 235 WYDGHTQDFRQPEAVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHI 294

Query: 276 VFPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
           +     +A                       F +L K       +++ G  L  +  G+ 
Sbjct: 295 LISAGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTM 354

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
            K +       D++FS+ K GD    I   FGY +  +  +K     SF++V+  +A
Sbjct: 355 VKPF------EDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLA 404


>gi|329908176|ref|ZP_08274836.1| Peptidyl-prolyl cis-trans isomerase ppiD [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546752|gb|EGF31691.1| Peptidyl-prolyl cis-trans isomerase ppiD [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 642

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/404 (18%), Positives = 159/404 (39%), Gaps = 22/404 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M E +R   R    +  L+++ VP F + GL          + +  VG Q +    +  +
Sbjct: 1   MFEFVRTHKRLM--QFLLLLIIVPSFALVGLGSYKSFGDAENVIAKVGGQPITQVEYDAA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            ++++    Q  G   + +   +    + ILDNL++   L        L      +   I
Sbjct: 59  QREQMARFKQMFGAQFDPKMFDTPEARQGILDNLIAQRALSVEAARQHLSVADAALQQSI 118

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
                  G D KF  + + S LA +G+    Y     + ++   +             + 
Sbjct: 119 TGIAGLVGPDGKFDGERYRSLLAMQGMTPAMYEQRLRQDMAVQQLNSAIQSTAFAPKTVA 178

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
            +      + R+V  ++       A  + +  +L  +++K    +  PE   I Y++   
Sbjct: 179 TRLSDINDQERTVQELLFKPADYAAKVNVTADMLKAYYDKNARQFEVPEQATIQYVVLSS 238

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAF 287
                +I +++ E+   YE+NK+ +   E R    ++   +K            +A++  
Sbjct: 239 DALASQIAVTDQEVADFYEQNKKSFGVDEQRRASHILINLKKGASATEKAAAKAKAEQVL 298

Query: 288 QSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             ++K    F ++A    E+QG +     L  F K  +      +++F L K  + + ++
Sbjct: 299 AQVRKAPGDFAKIAKASSEDQGSAPEGGDLDFFGKGAMTP-PFEEAVFKL-KLNEISGLV 356

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
              FG+ I  V+ IKP+   +  +VK  I   ++  KA+++  E
Sbjct: 357 ESDFGFHIIEVTAIKPASFRTLDQVKPQIVADIKRQKAAKQYSE 400


>gi|254805018|ref|YP_003083239.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
           alpha14]
 gi|254668560|emb|CBA06033.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
           alpha14]
 gi|319410487|emb|CBY90848.1| putative peptidyl-prolyl cis-trans isomerase D (PPIase D; rotamase
           D) [Neisseria meningitidis WUE 2594]
          Length = 512

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/247 (19%), Positives = 109/247 (44%), Gaps = 18/247 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+              
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55

Query: 74  VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            + +E+A   G  +  +  +L+  A L Q  + +G+     ++   I   P FH  + KF
Sbjct: 56  -IQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++
Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E
Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETE 234

Query: 253 LQAEYEK 259
           ++  +E+
Sbjct: 235 VKNAFEE 241


>gi|237752063|ref|ZP_04582543.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376630|gb|EEO26721.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 271

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 11/156 (7%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GK----KFIQL 299
           K+++ + E+   Y +NK K+  PE      ++  ++ EA      LKK GK    KF  L
Sbjct: 108 KVKVLDSEITKFYNENKSKFVQPETIKASHILVTSESEAKAIIAELKKAGKNVAGKFDSL 167

Query: 300 AEEQ---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A E+   G + +   LG  +K + +P+   A++ F L K    T  +   FGY +  V +
Sbjct: 168 AREKSKDGSAQNGGELGYIAKNQVVPE--FANAAFKLQKGAYTTTPVKSQFGYHVILVED 225

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            KP+ T++ +++K  I   +++ K  E++K++ + L
Sbjct: 226 KKPAGTIALKDIKGQIEQNLKLKKFQEEIKKEGEEL 261


>gi|330878776|gb|EGH12925.1| periplasmic folding chaperone [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 627

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 88/415 (21%), Positives = 172/415 (41%), Gaps = 34/415 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDIT----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112
            Q + M  +++   +  +  +      LD+K+L       L+    L Q   D       
Sbjct: 57  SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSD 116

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             +  ++ ++P F   D KFS D F   + + G +  ++     +ML +  ++G    G+
Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQF----RQMLGQEMLIGQVRAGV 171

Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
             S  + D Q   F   E ++ D+  L     P+    ++  +   ++++   + +PE  
Sbjct: 172 AGSAFVTDAQVDAFARLEKQTRDFASLTQPADPSAVKVTDDEVKAHYDQHAKEFMSPEQV 231

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--- 287
            + YI         K+ + +++LQA Y+K      S + R    L+  N K  DE     
Sbjct: 232 VLDYIELKKSSFFDKVTVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDEQAKAK 290

Query: 288 -----QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
                Q L KG+ F  LA+E     G S     LG F+ + + D +  +++++L K    
Sbjct: 291 VEEIQQRLAKGESFAALAKEFSQDPGSSSKGGDLG-FAGKGVYDPAFEEALYALNKDQVS 349

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            PV    FG+ +  +  ++     +F  +K+ ++N ++     +K  E  K+LE+
Sbjct: 350 QPV-RTDFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLED 403


>gi|218768240|ref|YP_002342752.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis Z2491]
 gi|121052248|emb|CAM08573.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis Z2491]
 gi|254670088|emb|CBA04992.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
           alpha153]
 gi|325204222|gb|ADY99675.1| conserved hypothetical protein [Neisseria meningitidis M01-240355]
          Length = 512

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/247 (19%), Positives = 109/247 (44%), Gaps = 18/247 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+              
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55

Query: 74  VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            + +E+A   G  +  +  +L+  A L Q  + +G+     ++   I   P FH  + KF
Sbjct: 56  -IQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++
Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E
Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETE 234

Query: 253 LQAEYEK 259
           ++  +E+
Sbjct: 235 VKNAFEE 241


>gi|254671966|emb|CBA04388.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
           alpha275]
          Length = 512

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/247 (19%), Positives = 109/247 (44%), Gaps = 18/247 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+              
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55

Query: 74  VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            + +E+A   G  +  +  +L+  A L Q  + +G+     ++   I   P FH  + KF
Sbjct: 56  -IQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++
Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E
Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETE 234

Query: 253 LQAEYEK 259
           ++  +E+
Sbjct: 235 VKNAFEE 241


>gi|238026979|ref|YP_002911210.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia glumae BGR1]
 gi|237876173|gb|ACR28506.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia glumae BGR1]
          Length = 647

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/362 (17%), Positives = 148/362 (40%), Gaps = 29/362 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V SV  +K+  + F ++++Q++    Q +G   +++   +    +++LD ++    L
Sbjct: 39  SANVASVDGRKITRAEFDSAYRQQIDQARQALGARYDAKVIDTPERRQQLLDGMIEQRAL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
              +  + L A    V   +  +P+       D     + +   LA +G+   +Y +   
Sbjct: 99  ADEVRRLHLTASDAAVREALLSNPIVAAMRKPDGSIDAERYTQLLAMQGMTPDQYQESIR 158

Query: 157 KMLSRTDVVGMFV-GGMRPSNL---LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             L++  +    +     P ++   L D A+    + R +  +VL      A   P++A 
Sbjct: 159 YQLTQQQLPSNLIDSAFTPKSVARSLTDLAQ----QQREIQALVLKPADYAAKVQPTDAQ 214

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFS-PEIR 270
           ++ +++ +K  +  PE   I Y++F             + +++  Y+ N  +Y +  ++R
Sbjct: 215 ISAYYDAHKQAFATPETATIQYLVFTPATAAASATPPTEADIRKYYDDNTARYRTEAQVR 274

Query: 271 TVEQLVFPNQKEADEAFQSLKKGK------------KFIQLAEEQGKSLSDIS----LGS 314
                +   +  +     + +               +F Q+AE+  +     +    LG 
Sbjct: 275 VSHIFIAAARGASAADKAAARAKADRLLADVKAHPDQFAQIAEKNSQDAPSAAKGGDLGY 334

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
            ++      +  D      K G+ + V+    G+ I   +++KP+    F EVK+ IA +
Sbjct: 335 ITRGSTAGGAAFDDAAFALKPGEISKVVESDLGFHILKATDVKPAIVKPFDEVKESIAAE 394

Query: 375 MR 376
           ++
Sbjct: 395 LK 396


>gi|294788519|ref|ZP_06753761.1| putative peptidyl-prolyl cis-trans isomerase [Simonsiella muelleri
           ATCC 29453]
 gi|294483396|gb|EFG31081.1| putative peptidyl-prolyl cis-trans isomerase [Simonsiella muelleri
           ATCC 29453]
          Length = 609

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 79/392 (20%), Positives = 167/392 (42%), Gaps = 45/392 (11%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
            A++ L ++ + F+ +G S   F  S +  +V +G Q       I  ++ +         
Sbjct: 15  TAQVLLALIGISFIGFGASQFSFG-SNNQYIVKIGDQ------IITRYQLD--------- 58

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
              N+ RA      + +   L++ A L +  + +GL      +   I  +  FH  + KF
Sbjct: 59  ---NAVRANQGATREAVFRQLMNRAYLTEGAKQLGLSISETELKQSIVNNKNFHDANGKF 115

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD-QAKRFY---FE 188
           S ++F   LA  G++E+++++   + L   + +G  +G    SN++ D Q  +F      
Sbjct: 116 STELFKQILASNGLSEQQFLESERETL-LLESIGKILG----SNVVADSQVAQFLNSTMA 170

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
            R +  + +N +   +     +A L ++++  + +Y  P+  +  ++ F      +K  +
Sbjct: 171 MRKIRNVGVNPQAFESKVKIDDASLKKFYDANQKSYTLPQAVQFEFVRFSPQTLAEKETV 230

Query: 249 SNDEL-QAEYEKNKEKYFSPEIRTVEQLVFP---NQKEADEAFQSLKKGK-----KFIQL 299
           S++E+ QA+ +       S   R +  ++ P   N+ +A E  Q + K       KF +L
Sbjct: 231 SDEEVKQAQQDVQNS---STNKREIAHILIPFGSNKDKAKEEAQKIAKEAQANPDKFAEL 287

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA----KKGDFTPVIHGSFGYVIAHVSN 355
           A++  +            E+    +L +  F  A    + G  + V+  +FGY I    N
Sbjct: 288 AKKYSQDSDSKDKSGIIGEFSAQGNLVNDAFKKAAFGVESGGVSDVVESNFGYHIIRAKN 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           +  + T S     +D A   +  +   K++E+
Sbjct: 348 LGNA-TASDDTAARDAAKLKKAQQTYTKLREE 378


>gi|32266279|ref|NP_860311.1| hypothetical protein HH0780 [Helicobacter hepaticus ATCC 51449]
 gi|32262329|gb|AAP77377.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 499

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 138/332 (41%), Gaps = 28/332 (8%)

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
           ++G +++  +A+ +GL +  L  +V  A L  F  D+GL      V  EI  + ++  K+
Sbjct: 68  QLGGMLDEAQAKQLGLPQIALQRVVQQAQLLNFAYDLGLSVSDEEVSNEIINAKVYVDKE 127

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
             FSH+++   L    ++  E+ +   K L    +  +    +  S+L +        E 
Sbjct: 128 GHFSHEIYKQALKERQMSPSEFEEIIRKSLLIQKIFSVMNLNVSQSSLQIPMVSVTPLEI 187

Query: 190 RSV-------DYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
            ++       D +++ +  V  +A   ++  L  ++EK  DN++ P    I YI    + 
Sbjct: 188 AALEMADSVRDRLMVKSIPVTQVAFSSTDDELKAFWEKNADNWKTPMEFHIEYIFVPFNA 247

Query: 242 KEKKIEISN---DELQAEYEKNKEKYFSPE------IRTVEQLVFPNQKEADEAFQSLKK 292
           +    E  N   ++ +++Y  N     S E      IR V++L    Q  A   ++ LK 
Sbjct: 248 QSPSEEALNKHYEDFKSDYLDNDGHLMSMEQSREKLIRDVQKL--EAQSLAKREYRDLKN 305

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           G K       QGK L+      F  +   D+ +AD    +A+ G     I    G+V   
Sbjct: 306 GSK-------QGKILTLKDNERFFIKNGVDLVVAD--MKVAQVGQVLKPIEADEGFVTLK 356

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
           + + K S   SF E K  +      TK  E +
Sbjct: 357 LLDKKESVNKSFDEAKSAVKEMYEHTKRKESL 388


>gi|34557645|ref|NP_907460.1| cell binding factor 2 precursor major antigen PEB4A [Wolinella
           succinogenes DSM 1740]
 gi|34483362|emb|CAE10360.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Wolinella
           succinogenes]
          Length = 271

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 19/159 (11%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-----KKGKKFIQLAEE 302
           +S  +++  Y++NKEK+  PE+   + ++  N+KEA E    +     K  +KF +LA  
Sbjct: 112 VSEGDMRKFYDENKEKFVQPELVKAKHILVQNEKEAKEVIAEIGKAGAKASEKFSELA-- 169

Query: 303 QGKSLSDIS-----LGSFSK-EYIPDVSLADSIFSLAKKGDF--TPVIHGSFGYVIAHVS 354
           + KS+         LG FSK + +P+   A++ F+L +KG +  TPV    FGY + +  
Sbjct: 170 KSKSIDPAGQNGGELGWFSKDQMVPE--FANAAFAL-QKGSYSKTPV-KTQFGYHVIYAE 225

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           + K    + +++VK  I   ++I K  + V    K+L E
Sbjct: 226 DKKAQAVLPYEDVKPQIEQNLKIQKFRDSVSSTAKKLRE 264


>gi|322417708|ref|YP_004196931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320124095|gb|ADW11655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 308

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 11/147 (7%)

Query: 244 KKIE----ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
           KKIE    +S+ ELQ  Y KNK+K+ S        ++  ++ EA E  + LK G  F +L
Sbjct: 121 KKIEDSGVVSDAELQDYYNKNKDKFKSDAQIRASHILVKSEAEAQEIQKQLKAGASFEEL 180

Query: 300 AEEQ---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A++    G +     LG FSK   IP+    +S+    K+G+ + ++   FGY I   + 
Sbjct: 181 AKKHSMDGAAQKGGDLGWFSKGSMIPEF---ESVAFGLKEGETSGIVKTQFGYHIIKQTG 237

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASE 382
            +P+   SF+EVK  I   +  TK  E
Sbjct: 238 KRPAGVRSFEEVKDQIKAALLPTKQQE 264


>gi|302343059|ref|YP_003807588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
           baarsii DSM 2075]
 gi|301639672|gb|ADK84994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
           baarsii DSM 2075]
          Length = 317

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 9/144 (6%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           +I +   E+ A Y+++K+++  PE      LV P++K ADE    + +G+  +  A+E G
Sbjct: 150 RISVDQSEIVAYYDEHKDQFSRPEQILALHLVLPDKKMADELVARMDRGQDMLAAAKEMG 209

Query: 305 KSL-SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            +L SD       + ++P   L  ++F+ A+ G      H  +GY +  V   +P+  + 
Sbjct: 210 VALGSDGRPDWLGRGHMPG-KLEKAVFA-ARPGRPAGPFHSDYGYHVVWVIEKRPAMVLP 267

Query: 364 FQEVKKDIANQMRITKASEKVKED 387
             E         RI  A  K K+D
Sbjct: 268 LAEAAG------RIQDALAKEKKD 285


>gi|188578367|ref|YP_001915296.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522819|gb|ACD60764.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 675

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 157/417 (37%), Gaps = 58/417 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L +PFL + + ++     G++ V  V      + S  + W
Sbjct: 20  MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 78

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100
              L     +I    F    E+AR     ++                 +LD LV    + 
Sbjct: 79  PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 138

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK---EYIDHYTK 157
              ED G+      V   IA    F   D KFS D + + LA +G   +   ++      
Sbjct: 139 LGAEDAGIVIGDASVRDYIANIQAFQ-VDGKFSPDKYRAALA-QGTPPRTPAQFDALVRD 196

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI--ADPSNAVLTQ 215
            L ++ +          +    ++  +   E R V+  +L     PA+  A  S+A + Q
Sbjct: 197 SLQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPP---PAMDTALVSDAQIKQ 253

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           W++ +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    +
Sbjct: 254 WYDGHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHI 313

Query: 276 VFPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
           +     +A                       F +L K       +++ G  L  +  G+ 
Sbjct: 314 LISAGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTM 373

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
            K +       D++FS+ K GD    I   FGY +  +  +K     SF++V+  +A
Sbjct: 374 VKPF------EDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDKLA 423


>gi|241668327|ref|ZP_04755905.1| hypothetical protein FphipA2_06151 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876860|ref|ZP_05249570.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842881|gb|EET21295.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 477

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 27/223 (12%)

Query: 97  ATLDQFIEDIGLEADHGR---------VWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           A LDQ I    + AD  R         +   I  +P+F  KD KFS D     +      
Sbjct: 72  AVLDQMINQYLILADAQRHNIVVSKLALQSAIFTNPMFFDKDGKFSADKLKQVV------ 125

Query: 148 EKEYI---DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR----FYFENRSVDYIVLNNR 200
             EYI   +   ++LS+     M    +  + +  D  K+     Y  N+ ++Y+ L+  
Sbjct: 126 --EYIGGMNRLEQILSQNIQATMIPKTIADTVITTDYEKKQLASIYLVNKKIEYLKLSPV 183

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
              +   P+   L  ++  +K++Y  P  K ISY +    +   K  I+NDELQ  YE +
Sbjct: 184 DFQSQVKPNQQDLESYYNAHKNDYINPAQKNISYFIISKEDFMSKNNINNDELQEYYETH 243

Query: 261 KE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
           +E  K F    +   Q +  N++ A E F +  +    ++ AE
Sbjct: 244 RELFKDFDNNTKASIQKIIQNRR-ALEQFNNYSQNIDSVKFAE 285


>gi|34556675|ref|NP_906490.1| hypothetical protein WS0233 [Wolinella succinogenes DSM 1740]
 gi|34482389|emb|CAE09390.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 485

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 174/409 (42%), Gaps = 39/409 (9%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  ++K  R  V  I++ V+ FV   F+ WG   A    S SS V  VG  K+  +   
Sbjct: 1   MINWMQKHKRYLVITIWISVIAFVGAGFVGWG---AYSFSSSSSWVAKVGETKITQTELE 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + +     ++ +G  ++ E+A+++G++K+ LD+L+S   +  F +D+GL      V  
Sbjct: 58  QEYARLYEFYNKIVGGSLDKEQAKALGIEKQALDSLISKTLMLNFAKDVGLRVSDEEVAK 117

Query: 118 EIARSPLFH--GK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
            + +   FH  GK D+K    V      +    E+    H + +L +  V+      + P
Sbjct: 118 AVVKMEAFHVEGKFDDKTYRKVLEENHYKPAAFERAL--HDSLLLEKLGVI------LTP 169

Query: 175 SNLLLDQ---AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           S   L++      FY +++     + +    P ++D    V + W E  +D Y       
Sbjct: 170 SVTELEKESLGAAFYIQDKLSIKTLSSTSLKPVVSDEE--VKSFWGEN-QDVYMTDRVYD 226

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           I Y L     K  +I  S++EL+  Y+  K  Y   + R +E  +   + E D      +
Sbjct: 227 IIYSL----SKNDEISASDEELKIHYDSFKNNYLGLDGRPLEFELARTRVEKDYKDAQAE 282

Query: 292 KG--KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI---FSLAKKGDFTPVIHGSF 346
           K   K +I+  +      +  SL         D +L D +    S AK G+    +    
Sbjct: 283 KNALKTYIEFKKSPTPEGTRYSLAE------SDETLGDELLYRLSEAKVGETLKPVPSPE 336

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR-LEEF 394
           GY+   +  IK S  + F+  K+   N +   K  + ++E  K+ LE F
Sbjct: 337 GYLTIKLMGIKESEPMKFEAAKELARNDLLAQKKRDLLEEMAKKELESF 385


>gi|240949547|ref|ZP_04753887.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor NM305]
 gi|240296120|gb|EER46781.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor NM305]
          Length = 624

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 107/531 (20%), Positives = 219/531 (41%), Gaps = 58/531 (10%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI-SQKIG- 72
           KI   ++ + F++ G+   L +   S+  V V  + +   +F ++  ++  ++ SQK G 
Sbjct: 15  KIIFTLVSLSFVLGGIGSGLVATDDSA--VKVNGEGISQRTFTDAKNRQQNILYSQKGGE 72

Query: 73  ---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
               +   E AR    ++ +L++L++   L Q+ + + L+    ++  EI     F  ++
Sbjct: 73  AWDLLDKPEYARE--FNQSVLNSLINDELLRQYAKSLKLDVGVDQIKSEIVHDANFQ-QN 129

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRF 185
            KF + ++   L   G+      D Y  ++    +      G+  ++  L    +   + 
Sbjct: 130 GKFDNKLYQQTLRNAGLT----TDGYAAIVREGMIFSQIEEGIINTSFDLPAQQEALAKL 185

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
            F+ R V     +          S   L  ++E +K     PE   + Y++    + EK+
Sbjct: 186 LFQKRDVRLATYSLADEAKNQTVSPEELQSFYEAHKKQLLTPETFTVEYLVLTPKDVEKR 245

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--- 302
           I+I+++++   Y+KNK ++ +     +  +   N+ EA+   Q L  G  F  LA+E   
Sbjct: 246 IQITDEQIATYYDKNKAQFVTKGEANLAHIQVANEAEANAIAQQLNNGADFATLAKEKST 305

Query: 303 ------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
                 QG +L     G+F + +       ++  S  + G  +  I     Y I  V + 
Sbjct: 306 DKLSAAQGGNLGWTKAGTFPQAF-------ENAASQLQVGQVSQPIKIDNAYHIIKVIDR 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           K    +   +VK  I   +R     E +  +Y  +   +A  ++ +     E +  +   
Sbjct: 359 KAENIIPLAQVKDKITETIR----KELLASEYSTVARDMA-NSAFENSGSLEAVAKV--- 410

Query: 417 LVDFAGKDVKGKEV---AAIPYK---EQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465
               AG ++        A +P +   E +   +F  D   +  ++ AL  G       M+
Sbjct: 411 ----AGLEIHKTSAFTQANVPAELQHEAVEKALFESDLRQTGQNSEALDVGDSTNPRTMF 466

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
           V++ +    R++ LEE  TDV+   K  K  + + S A   ++  + EGKN
Sbjct: 467 VRVSDFQAEREKTLEEAKTDVEAMVKREKAEKALLSNAEANLVALN-EGKN 516


>gi|225023875|ref|ZP_03713067.1| hypothetical protein EIKCOROL_00741 [Eikenella corrodens ATCC
           23834]
 gi|224943349|gb|EEG24558.1| hypothetical protein EIKCOROL_00741 [Eikenella corrodens ATCC
           23834]
          Length = 513

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 2/170 (1%)

Query: 89  ILDNLVSGATLDQFIEDIGL-EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           +  +LV  A  DQ   ++G+ E    ++ G I R P F   + +FS + F + L + GI 
Sbjct: 73  VYQSLVQQAYFDQGAAELGVGELSIEQIKGVITRDPSFQ-VNGQFSPEQFQAYLRQRGIT 131

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
           E+  I+       R  ++ +   G   S+   +Q        R +     N     +   
Sbjct: 132 EERLIEEMRSQYRRQTLISLLSNGNIVSDSQANQILALTGSERELRTAPFNAADFASKVQ 191

Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
           P++A L  +FE  K  Y  P   ++ ++  +V E  K+  +S  ELQ  Y
Sbjct: 192 PTDAALRSYFEANKAKYALPLAVKLEFVDLNVEELAKQQTVSAQELQEAY 241


>gi|297564584|ref|YP_003683556.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
           DSM 9946]
 gi|296849033|gb|ADH62048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
           DSM 9946]
          Length = 632

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 11/154 (7%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           V E +KK   + +E++  ++ NK  Y + +     Q+V  ++K AD+ +  LK G  F++
Sbjct: 156 VEEIQKKATPTPEEVKFYFDLNKANYKTEDRVKARQIVVDDKKLADDLYAQLKAGADFVE 215

Query: 299 LAEEQGKSLSDI--SLGS--------FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           LA++  K  +D   +LG+        F    I    +AD++F L + G   P+  G   Y
Sbjct: 216 LAKKNSKVAADQGGALGAETGKSEPGFVTRVIFPSEVADAVFKLKQGGLTAPIASGGR-Y 274

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            I  V   KP    +F+EVK  +A  ++  K  +
Sbjct: 275 YIVKVEEFKPGGDPNFEEVKDRVAEDVKKIKGDQ 308


>gi|251772782|gb|EES53344.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum
           ferrodiazotrophum]
          Length = 307

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           EIS     AEY + K  Y +PE   V  +V  ++ E      +L  G  F  LA  + KS
Sbjct: 140 EISRKAALAEYNRRKGHYETPERALVRDIVVRSEDEGKAILTALAAGNSFSALA--RAKS 197

Query: 307 LS-DISLGSFSKEYIPDVSLAD--SIFSLA---KKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           LS + + G      +P  +L +  ++F+LA   K G+ +P++   +GY I  +  I PS 
Sbjct: 198 LSPEGAKGGL----LPPYALGEMPALFALAFSMKPGEVSPLLSSPYGYHILKLVKILPSA 253

Query: 361 TVSFQEVKKDIANQMR 376
            + F++V+  I   +R
Sbjct: 254 DLPFRKVRDRIERHLR 269


>gi|134295955|ref|YP_001119690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
 gi|134139112|gb|ABO54855.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
          Length = 646

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/361 (19%), Positives = 141/361 (39%), Gaps = 34/361 (9%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V +V   K+    F  +++Q++    Q +G   + +   +    K++LD L+    L
Sbjct: 39  SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVL 98

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               + + L A    V   +   P+       D       +   L+ +G+  ++Y +   
Sbjct: 99  ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGTIDVQRYAQLLSFQGMTPEQYQERVR 158

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L+   +    V           +      + R V  +VL +    A   P++A LT +
Sbjct: 159 YSLALQQIPASIVSSAFTPKGPAQRLSELAAQQREVQALVLKSSDFAAKVQPTDAQLTAY 218

Query: 217 FEKYKDNYRAPEYKRISYILFD--VHEKEKKIEISNDELQAEYEKNKEKYFS-PEIR--- 270
           ++ +K ++  PE   I Y+++           + ++ +++  Y+ N   + S  ++R   
Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAAAASAQPTDADIKKFYDDNPTHFRSEAQVRISH 278

Query: 271 -------------------TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
                                EQL+   +   D+  Q  +K  +    A + G  L  I+
Sbjct: 279 IFIAAASNASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKSSQDAPSAAK-GGDLGFIT 337

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
            GS +     D    D+ F+L K+G+ + V+    G+ I   + +KPS    F +VK  I
Sbjct: 338 RGSTAGGKAFD----DAAFAL-KQGEVSGVVESDLGFHILKATEVKPSVVKPFADVKDQI 392

Query: 372 A 372
           A
Sbjct: 393 A 393


>gi|261392500|emb|CAX50051.1| putative peptidyl-prolyl cis-trans isomerase D (PPIase D; rotamase
           D) [Neisseria meningitidis 8013]
          Length = 512

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 109/246 (44%), Gaps = 16/246 (6%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+      M +++ G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA------MQNEQAGG 63

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
              S  A        +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 64  GSPSRDA--------VFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEK 259
           +  +E+
Sbjct: 236 KNAFEE 241


>gi|222839633|gb|EEE77956.1| predicted protein [Populus trichocarpa]
          Length = 390

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 19/161 (11%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSL 290
           E  I +S D++++ Y +N E+   PE R    ++    K+A            DE    L
Sbjct: 2   EAGITLSEDDVRSYYNQNAERLAGPEERRASHILINASKDAPAAEQEKAKAKADELLAEL 61

Query: 291 KK-GKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           +K  K+F +LA    ++ G + S   LG F +  +      D+ F + K GD + V+H  
Sbjct: 62  RKDPKRFAELAKANSQDGGSAASGGDLGYFGRGAMVK-PFEDAAFGM-KVGDISDVVHSD 119

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           FGY I  + +IK     SF++++  +  +++  +A  K  E
Sbjct: 120 FGYHIISLEDIKKPKAPSFEQMRPKLEAELKQQQAQRKFAE 160


>gi|309378619|emb|CBX22797.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 512

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/247 (19%), Positives = 106/247 (42%), Gaps = 18/247 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+                 Q +  
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVRVGDEKIS---------------EQSLNA 54

Query: 74  VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            V +E+A      +  +  +L+  A L Q  + +G+     ++   I   P FH    KF
Sbjct: 55  AVQNEQADGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDAGGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++
Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E
Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETE 234

Query: 253 LQAEYEK 259
           ++  YE+
Sbjct: 235 VKNAYEE 241


>gi|315637398|ref|ZP_07892611.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22]
 gi|315478290|gb|EFU69010.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22]
          Length = 485

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/415 (19%), Positives = 174/415 (41%), Gaps = 42/415 (10%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           W++ I  V     F+ WG  D  +   G   V  +G ++V    +   +       S+  
Sbjct: 17  WISTIAFVG--AGFVGWGSYD--YGKQGG-VVAKIGDREVTVEEYQQEYSNLYSQYSRMF 71

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G + N++ A  +GL     + ++       + + +GL+     +  E+ +   F  KD K
Sbjct: 72  GDMFNNQIAEQLGLKDIAYNQVLQKNLFMAYGDSLGLDVTDEEIARELLKYEAFF-KDGK 130

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F  D ++  L +  +  K + +   + L    V  +F   + P++  ++   +  F    
Sbjct: 131 FDKDTYLKVLNQNRLTPKHFEESLKRTLLLQKVQSLF--EVNPTSWEVENISKLLFLEDD 188

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +   +L++  V    D     L +++E  K++Y       +S + +D+  KE     SN 
Sbjct: 189 ITIKILSSNDVKVTVDEEG--LKKYWEDNKNSY-------MSEVTYDLEIKEIPFINSNS 239

Query: 252 ---ELQAEYEKNK--EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
              E++ +YEK K   K+   +I+++E+     + + D+ F   +  K +++L +++ K 
Sbjct: 240 TEAEIKEQYEKFKIDYKHEDGKIKSLEEATPQIKTDLDDKFTKTEALKIYLKLKKDEEKF 299

Query: 307 LSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
              +++      +S+E I  +          K G+       +  Y+I  V  + PS  +
Sbjct: 300 DKTLNILESKLPYSQENIAKIKEV-------KNGEVVKPFMENGKYIIVKVVKLNPSKVL 352

Query: 363 SFQEVK----KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            F++ K    +D    +R  K  E+ K + K  +     GT +  ++R  KI  +
Sbjct: 353 DFEQAKIKATQDYEKVLRAQKLQEQAKAELKDFK-----GTDIAGVTRTSKIAGL 402


>gi|157737622|ref|YP_001490305.1| hypothetical protein Abu_1381 [Arcobacter butzleri RM4018]
 gi|157699476|gb|ABV67636.1| conserved hypothetical membrane protein [Arcobacter butzleri
           RM4018]
          Length = 485

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/415 (19%), Positives = 174/415 (41%), Gaps = 42/415 (10%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           W++ I  V     F+ WG  D  +   G   V  +G ++V    +   +       S+  
Sbjct: 17  WISTIAFVG--AGFVGWGSYD--YGKQGG-VVAKIGDREVTVEEYQQEYSNLYSQYSRMF 71

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G + N++ A  +GL     + ++       + + +GL+     +  E+ +   F  KD K
Sbjct: 72  GDMFNNQIAEQLGLKDIAYNQVLQKNLFMAYGDSLGLDVTDEEIARELLKYEAFF-KDGK 130

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F  D ++  L +  +  K + +   + L    V  +F   + P++  ++   +  F    
Sbjct: 131 FDKDTYLKVLNQNRLTPKHFEESLKRTLLLQKVQSLF--EVNPTSWEVENISKLLFLEDD 188

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +   +L++  V    D     L +++E  K++Y       +S + +D+  KE     SN 
Sbjct: 189 ITIKILSSNDVKVTVDEEG--LKKYWEDNKNSY-------MSEVTYDLEIKEIPFINSNS 239

Query: 252 ---ELQAEYEKNK--EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
              E++ +YEK K   K+   +I+++E+     + + D+ F   +  K +++L +++ K 
Sbjct: 240 TEAEIKEQYEKFKIDYKHEDGKIKSLEEATPQIKTDLDDKFTKTEALKIYLKLKKDEEKF 299

Query: 307 LSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
              +++      +S+E I  +          K G+       +  Y+I  V  + PS  +
Sbjct: 300 DKTLNILESKLPYSQENIAKIKEV-------KNGEVVKPFMENGKYIIVKVVKLNPSKVL 352

Query: 363 SFQEVK----KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            F++ K    +D    +R  K  E+ K + K  +     GT +  ++R  KI  +
Sbjct: 353 DFEQAKAKATQDYEKVLRAQKLQEQAKAELKDFK-----GTDIAGVTRTSKIAGL 402


>gi|325130315|gb|EGC53082.1| hypothetical protein NMBOX9930304_0938 [Neisseria meningitidis
           OX99.30304]
          Length = 512

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/246 (19%), Positives = 108/246 (43%), Gaps = 16/246 (6%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAMQNE-----QADGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             + +          +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 65  SPSRD---------AVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEK 259
           +  +E+
Sbjct: 236 KNAFEE 241


>gi|154175136|ref|YP_001408066.1| trimethylamine-n-oxide reductase 1 [Campylobacter curvus 525.92]
 gi|112802868|gb|EAU00212.1| trimethylamiNe-n-oxide reductase 1 (tmaoreductase 1)
           (trimethylamine oxidase 1) [Campylobacter curvus 525.92]
          Length = 272

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 11/151 (7%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQL 299
           I+ S+DEL+  Y KNK+    P       ++  ++K A+     LK  KG    KKF +L
Sbjct: 109 IKTSDDELRNFYNKNKDSLNQPAQARASHILVEDEKTANAIIAQLKNLKGDALAKKFAEL 168

Query: 300 AE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A+    ++G +     LG F +  +     AD++FS++K    T  +   FGY I    +
Sbjct: 169 AQADSIDKGSAAHGGELGWFGQSQMVK-PFADAVFSMSKGSVSTKPVKSQFGYHIILKED 227

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            KP+  VSF++ K  I   +++ K    +++
Sbjct: 228 SKPAGVVSFEQAKPQIEQAVKMEKFQNTIRQ 258


>gi|304405097|ref|ZP_07386757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345976|gb|EFM11810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
          Length = 365

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 76/142 (53%), Gaps = 6/142 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ- 303
           K  +++ ++Q  Y++NKE + +PE      ++   ++EAD   + LK G  F  +A+E+ 
Sbjct: 178 KATVTDKDIQDYYDQNKESFSTPEQVRASHILVKTKEEADAILKQLKDGADFATIAKEKS 237

Query: 304 ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
              G   +   L  F K  + D +   + F L K G+ +  +  ++G+ I  V++ K + 
Sbjct: 238 LDTGTKDAGGDLNYFGKGQM-DPAFEKAAFEL-KVGETSQPVQSAYGFHIIKVTDHKQAA 295

Query: 361 TVSFQEVKKDIANQMRITKASE 382
           + +F+E K+DI N + ++K +E
Sbjct: 296 SPTFEEKKEDIKNILMMSKINE 317


>gi|240851485|ref|ZP_04752236.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor 202]
 gi|240310003|gb|EER48295.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor 202]
          Length = 624

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 108/531 (20%), Positives = 217/531 (40%), Gaps = 58/531 (10%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI-SQKIG- 72
           KI   ++ + F++ G+   L  V+   + V V  + +   +F ++  ++  ++ SQK G 
Sbjct: 15  KIVFTLVSLSFVLGGIGSGL--VATDDSAVKVNGEGISQRTFTDAKNRQQNILYSQKGGE 72

Query: 73  ---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
               +   E AR    ++ +L++L++   L Q+ + + L+    ++  EI     F  ++
Sbjct: 73  AWDLLDKPEYARE--FNQSVLNSLINDELLRQYAKSLKLDVGVDQIKSEIVHDANFQ-QN 129

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRF 185
            KF ++++   L   G+      D Y  ++    +      G+  ++  L    +   + 
Sbjct: 130 GKFDNNLYQQALRNAGLTP----DGYAAVVREGMIFSQIEEGIINTSFDLPAQQEALAKL 185

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
            F+ R V     +          S   L  +++ +K     PE   + Y++    + EK+
Sbjct: 186 LFQKRDVRLATYSLADEAKNQTVSPEELQSFYDAHKKQLLTPETFTVEYLVLTPKDVEKR 245

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--- 302
           I+I+++++   Y+KNK ++ +     +  +   N+ EA+   Q L  G  F  LA+E   
Sbjct: 246 IQITDEQIATYYDKNKAQFVTKGEANLAHIQVANEAEANAIAQQLNNGADFAALAKEKST 305

Query: 303 ------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
                 QG +L     G+F + +       ++  +  + G  +  I     Y I  V + 
Sbjct: 306 DKLSAAQGGNLGWAKAGTFPQAF-------ENAANQLQVGQVSQPIKIDNAYHIIKVIDR 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           K    +   +VK  I   +R     E +  +Y  +   +A  ++ +     E +  +   
Sbjct: 359 KAENVIPLAQVKDKITETIR----KELLASEYSTVARDMA-NSAFENSGSLEAVAKV--- 410

Query: 417 LVDFAGKDV------KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465
               AG D+          V A    E +   +F  D   +  ++ AL  G       M+
Sbjct: 411 ----AGLDIHKTSAFTQSNVPAELQHEAVEKALFESDLRQTGQNSEALDVGDSTNPRTMF 466

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
           V+I +    R++ LEE  TDV+   K  K  + + S A +  L    EGKN
Sbjct: 467 VRISDFQAEREKTLEEAKTDVEAMVKREKAEKTLLSNA-EANLAALNEGKN 516


>gi|189423768|ref|YP_001950945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
 gi|189420027|gb|ACD94425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
          Length = 305

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 15/167 (8%)

Query: 235 ILFDVHEKEKKIE----ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           I+ D + K KK+E    IS+DEL+  YE+N +K+ + E      ++  +++EA    + L
Sbjct: 113 IIVDTYLK-KKVEAESKISDDELKKFYEQNLDKFKAGEQIRASHILVKSEQEAQSILEQL 171

Query: 291 KKGKKFIQLAEEQGKSLSDIS---LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           KKG  F +LA+ +    S      LG F K   +P  +   + F L K+G  + ++   F
Sbjct: 172 KKGANFEELAKTKSADSSAAKGGDLGWFGKGNMVP--AFEKAAFGL-KEGQLSGIVKSDF 228

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE---KVKEDYKR 390
           GY I  ++  + + T    EVK+ I   +   K  +   K+KED K+
Sbjct: 229 GYHIIKLTGKRAAGTRPLDEVKEQIKGAIMPQKQQQVFMKLKEDLKK 275


>gi|170759119|ref|YP_001785376.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169406108|gb|ACA54519.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A3
           str. Loch Maree]
          Length = 247

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 7/131 (5%)

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI---SLGSFS 316
           NKE++ + E+ T   ++  ++KEA+  ++ +K G  F + AE+  K  S     SLG+F+
Sbjct: 106 NKEEFRTQELITARHILVDSEKEANNIYEEIKDGLDFSEAAEKYSKCPSKAQGGSLGTFT 165

Query: 317 K-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           + + +P+   A      A+    T  I   FGY +  V NIK S    F EVK  I N++
Sbjct: 166 RGQMVPEFEKA---VLEAEVDKVTEAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKL 222

Query: 376 RITKASEKVKE 386
              K +E+  E
Sbjct: 223 LQEKQNEQYNE 233


>gi|325920988|ref|ZP_08182874.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
           19865]
 gi|325548522|gb|EGD19490.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
           19865]
          Length = 656

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/420 (19%), Positives = 156/420 (37%), Gaps = 60/420 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  +  W+A   L +L +PFL + + ++     G++ V  V      + S  + W
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 61  KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100
              L     +I    F    E+AR     ++                 +LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGDNFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK---EYIDHYTK 157
              ED G+      V   I     F   D KFS D + + LA +G   +   ++      
Sbjct: 120 LGAEDAGIVIGDATVRDYITGIQAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVLT 214
            L ++ +          +    ++  +   E R V+  +L     P  AD    S+A + 
Sbjct: 178 SLQQSVIPQAIAESGFATKAEFERLLKLMGETRDVELAMLP----PPAADTAPVSDAQIK 233

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           QW++ +  ++R PE   I Y+  +  + +         L+  YE+ K ++  P+ R    
Sbjct: 234 QWYDGHAQDFRQPETVTIEYVEINAAKLQPATAADEATLRKRYEEEKGRFVEPDQRLTSH 293

Query: 275 LVFPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGS 314
           ++     +                        F +L K       ++  G  L  +  G+
Sbjct: 294 ILISAGSDPAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKGAGGDLGWVEKGT 353

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
             K +       D++F++ K GD    I   FGY +  +  +K     SF++V+  +A +
Sbjct: 354 MVKPF------EDALFAM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAE 406


>gi|315648234|ref|ZP_07901335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
           V453]
 gi|315276880|gb|EFU40223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
           V453]
          Length = 399

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 88/164 (53%), Gaps = 5/164 (3%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           KI+++++E++  Y++NKE + +PE      ++   ++EADE  + LK G  F  +A+E+ 
Sbjct: 223 KIKVTDEEIKTIYDQNKESFATPEQVRASHILVETKEEADEIVKQLKDGADFAAIAKEKN 282

Query: 305 KSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  +  + G    F +  + D +  ++ F L KK + +  +  SFGY I  +++ K +  
Sbjct: 283 QDATKDTGGDLDFFGRGEM-DPAFEEAAFKL-KKDEISDPVKSSFGYHIIKLTDRKEATN 340

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
            + ++ K +I  Q+   K  ++     + L++   +  +++E++
Sbjct: 341 PTLEDKKVEIRKQLENQKVYQESSAYIQELKDKATITNTLEEVA 384


>gi|171058611|ref|YP_001790960.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
 gi|170776056|gb|ACB34195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
          Length = 637

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/415 (17%), Positives = 172/415 (41%), Gaps = 44/415 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSD-ALFSVSGSSTVVSVGRQKVPFSSFIN 58
           M + +R+ +R  + +  L ++ VP FL+ G+     FS S +  V ++  + +  + +  
Sbjct: 1   MFDFVRRHNR--LLQFGLALVIVPSFLVVGIQGYDQFSAS-NEAVANIDGRAITQTEWDA 57

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           + +Q++  +  ++  V +++   S  + +K+LD+LV    +    + + L     R+   
Sbjct: 58  AHRQQVERVRAQMPGV-DAKLLDSPAIKQKVLDDLVRERVMLVAAQKLLLAPTDQRLQRL 116

Query: 119 IARSPLF---HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
            A  P F      D     D+  +R    G+  +++     +  +   V     G    S
Sbjct: 117 FATDPQFASLRNADGSVRKDLLEAR----GMTSEQFAQQLRQEFALRQVSLGLAGSALAS 172

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKRIS 233
             +  +A   +F+ R V   +   +   +    S+A    +++  ++   +++PE   + 
Sbjct: 173 PAVTARAMDSFFQQREVQVALFPAKDYLSKVSASDAEQQAYYDDPRNAAQFQSPETVSVE 232

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------------ 275
           Y++ D+      I ++ D+L+  Y++N  +Y  P+ R    +                  
Sbjct: 233 YVVLDLPAVTAGINVNEDDLRKYYDENAARYEQPQERRARHILVKLDADASDDAKAKARE 292

Query: 276 ----VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
               +    ++   AF  L + +     +  QG  L  I+ G+  K +       D++F 
Sbjct: 293 KAAALLAEVQKNRAAFADLARRQSDDPGSAAQGGDLDWIARGAMVKPF------EDAVFG 346

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           L KKG+   ++   FG  +  V++ +     +F  V+ ++  ++R   A ++  E
Sbjct: 347 L-KKGELGGIVETEFGLHVIEVTDTRGGEKRAFANVRGELEAEVRKQLAQKRYAE 400


>gi|301059212|ref|ZP_07200150.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
 gi|300446702|gb|EFK10529.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
          Length = 343

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--QGKSLSD 309
           E++A +E N   Y +PE     Q+    +K+A+E +  ++ G+    LA +  +G    D
Sbjct: 184 EMKARFESNPNHYKAPEEIRFRQIFCRTKKKANELYGKIRSGESLASLARKYSEGPEAVD 243

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
                +  + I D SL   +F +A  GD +PV  G+ GY I  V + +P    +F E+  
Sbjct: 244 GGEVGWVAKGILDESLDKMLFQMA-PGDISPVTKGASGYHIFEVMDRRPGGFRAFSEIID 302

Query: 370 DIANQMRITKASEKVKE 386
            I   +  T+    +KE
Sbjct: 303 GIEEDLCQTRRMSFIKE 319


>gi|237803592|ref|ZP_04591177.1| periplasmic folding chaperone [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331025574|gb|EGI05630.1| periplasmic folding chaperone [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 627

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 91/420 (21%), Positives = 176/420 (41%), Gaps = 44/420 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAMFTATSNKQNAAEVNGEDIS----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERARSVG---LDKKIL-----DNLVSGATLDQFIEDIGLEADH 112
            Q + M  +++   ++ +  +      LD+K+L       L+    L Q   D       
Sbjct: 57  SQAVDMQRRQLAQQLSQQLGKDFDPALLDEKLLRESALKGLIDRKLLLQGASDAKFTFTD 116

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             +  +I ++P F   D KFS D F   + + G +  ++     +ML +  ++G    G+
Sbjct: 117 AALDQQILQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQF----RQMLGQEMLIGQVRAGV 171

Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225
             S  + D Q + F   E ++ D+  L    +PA  D S   +T       ++++   + 
Sbjct: 172 AGSAFVTDAQVEAFARLEKQTRDFASLT---LPA--DTSAVKVTDDEVKAHYDQHAKEFM 226

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
           +PE   + YI         K+++ +++LQA Y+K      S + R    L+  N K  DE
Sbjct: 227 SPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDE 285

Query: 286 AF--------QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
                     Q L KG+ F  LA+E     G S     LG ++ + + D +  +++++L 
Sbjct: 286 QAKAKIEEIQQRLAKGEDFAALAKEFSQDPGSSSKGGDLG-YAGKGVYDPAFEEALYALN 344

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           K     PV    FG+ +  +  ++     +F  +K  + ++++     +K  E  K+LE+
Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKGKLTDELKSQLVEQKFVEVTKQLED 403


>gi|121634931|ref|YP_975176.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis FAM18]
 gi|120866637|emb|CAM10388.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis FAM18]
 gi|325132578|gb|EGC55271.1| hypothetical protein NMBM6190_0987 [Neisseria meningitidis M6190]
 gi|325138351|gb|EGC60920.1| hypothetical protein NMBES14902_1084 [Neisseria meningitidis
           ES14902]
 gi|325142491|gb|EGC64895.1| hypothetical protein NMB9615945_0995 [Neisseria meningitidis
           961-5945]
 gi|325198371|gb|ADY93827.1| conserved hypothetical protein [Neisseria meningitidis G2136]
          Length = 512

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/246 (19%), Positives = 108/246 (43%), Gaps = 16/246 (6%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAMQNE-----QADGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             + +          +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 65  SPSRD---------AVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEK 259
           +  +E+
Sbjct: 236 KNAFEE 241


>gi|222823915|ref|YP_002575489.1| major antigenic peptide PEB-cell binding factor [Campylobacter lari
           RM2100]
 gi|222539137|gb|ACM64238.1| major antigenic peptide PEB-cell binding factor [Campylobacter lari
           RM2100]
          Length = 271

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 112/237 (47%), Gaps = 36/237 (15%)

Query: 159 LSRTDVVGMFVGGMRPSNL--LLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQ 215
           +S T+V   F   +R + +  L  + K+   +   V  +VL +     I  DPS      
Sbjct: 30  ISDTEVNEFFAPMLRGAKITDLPAEQKKAIIDQYIVQQLVLKDAKAQKIENDPS------ 83

Query: 216 WFEKYKDNY-RAPEYKRISYILFDVHEKEKKIEISNDELQAE--YEKNKEKYFSPEIRTV 272
               YK+   RA E      IL ++++K+    I ND+ +A+  YE NK+K+  P     
Sbjct: 84  ----YKEELERAKEA-----ILVNIYQKKIFDSIKNDDAKAKKFYEANKDKFTKPAQVKA 134

Query: 273 EQLVFPNQKEADEAFQSLKK--GK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPD 322
           + ++  ++KEA +    L K  GK    KF QLA+E+    G S     LG F++  +  
Sbjct: 135 KHILVTSEKEAKDIIAELSKLSGKALNDKFAQLAKEKSIDKGSSAQGGDLGWFAESTMVK 194

Query: 323 VSLADSIFSLAKKGDF--TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
              AD+ FS+ KKG    TPV    FGY I    + +   T+S+ EVK  I + +++
Sbjct: 195 -PFADAAFSM-KKGTISKTPV-KSDFGYHIILKEDARAKSTMSYNEVKAGIESNIKM 248


>gi|325144618|gb|EGC66917.1| hypothetical protein NMBM01240013_1034 [Neisseria meningitidis
           M01-240013]
 gi|325205986|gb|ADZ01439.1| conserved hypothetical protein [Neisseria meningitidis M04-240196]
          Length = 512

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/247 (19%), Positives = 107/247 (43%), Gaps = 18/247 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+                 Q +  
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKIS---------------EQSLNA 54

Query: 74  VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            V +E+A      +  +  +L+  A L Q  + +G+     ++   I   P FH  + KF
Sbjct: 55  AVQNEQADGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++
Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E
Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETE 234

Query: 253 LQAEYEK 259
           ++  +E+
Sbjct: 235 VKNAFEE 241


>gi|161870081|ref|YP_001599251.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442]
 gi|161595634|gb|ABX73294.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442]
          Length = 512

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/247 (19%), Positives = 107/247 (43%), Gaps = 18/247 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+                 Q +  
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKIS---------------EQSLNA 54

Query: 74  VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            V +E+A      +  +  +L+  A L Q  + +G+     ++   I   P FH  + KF
Sbjct: 55  AVQNEQADGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++
Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E
Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETE 234

Query: 253 LQAEYEK 259
           ++  +E+
Sbjct: 235 VKNAFEE 241


>gi|213968838|ref|ZP_03396979.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
           tomato T1]
 gi|301384116|ref|ZP_07232534.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           tomato Max13]
 gi|302059522|ref|ZP_07251063.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           tomato K40]
 gi|302135027|ref|ZP_07261017.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926441|gb|EEB59995.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
           tomato T1]
          Length = 627

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 92/420 (21%), Positives = 176/420 (41%), Gaps = 44/420 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDIT----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112
            Q + M  +++   +  +  +      LD+K+L       L+    L Q   D       
Sbjct: 57  SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSD 116

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             +  ++ ++P F   D KFS D F   + + G +  ++     +ML +  ++G    G+
Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQF----RQMLGQEMLIGQVRAGV 171

Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225
             S  + D Q   F   E ++ D+  L    +PA  DPS   +T       ++++   + 
Sbjct: 172 AGSAFVTDAQVDAFARLEKQTRDFASLT---LPA--DPSAVKVTDDEVKAHYDQHAKEFM 226

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK---- 281
           +PE   + YI         K+ + +++LQA Y+K      S + R    L+  N K    
Sbjct: 227 SPEQVVLDYIELKKSSFFDKVTVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDD 285

Query: 282 ----EADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
               + +E  Q L KG+ F  LA+E     G S     LG F+ + + D +  +++++L 
Sbjct: 286 QAKAKVEEIQQRLAKGEDFAALAKEFSQDPGSSSKGGDLG-FAGKGVYDPAFEEALYALN 344

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           K     PV    FG+ +  +  ++     +F  +K+ ++N ++     +K  E  K+LE+
Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLED 403


>gi|28870877|ref|NP_793496.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854126|gb|AAO57191.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331019234|gb|EGH99290.1| periplasmic folding chaperone [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 627

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 92/420 (21%), Positives = 176/420 (41%), Gaps = 44/420 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDIT----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112
            Q + M  +++   +  +  +      LD+K+L       L+    L Q   D       
Sbjct: 57  SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSD 116

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             +  ++ ++P F   D KFS D F   + + G +  ++     +ML +  ++G    G+
Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQF----RQMLGQEMLIGQVRAGV 171

Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225
             S  + D Q   F   E ++ D+  L    +PA  DPS   +T       ++++   + 
Sbjct: 172 AGSAFVTDAQVDAFARLEKQTRDFASLT---LPA--DPSAVKVTDDEVKAHYDQHAKEFM 226

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK---- 281
           +PE   + YI         K+ + +++LQA Y+K      S + R    L+  N K    
Sbjct: 227 SPEQVVLDYIELKKSSFFDKVTVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDD 285

Query: 282 ----EADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
               + +E  Q L KG+ F  LA+E     G S     LG F+ + + D +  +++++L 
Sbjct: 286 QAKAKVEEIQQRLAKGEDFAALAKEFSQDPGSSSKGGDLG-FAGKGVYDPAFEEALYALN 344

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           K     PV    FG+ +  +  ++     +F  +K+ ++N ++     +K  E  K+LE+
Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLED 403


>gi|313681990|ref|YP_004059728.1| hypothetical protein Sulku_0862 [Sulfuricurvum kujiense DSM 16994]
 gi|313154850|gb|ADR33528.1| hypothetical protein Sulku_0862 [Sulfuricurvum kujiense DSM 16994]
          Length = 488

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 170/430 (39%), Gaps = 60/430 (13%)

Query: 12  WVAKI-FLVVLFVPFLIWGLSDALFSVS--GSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
           W++ I F+   FV +  +   D   +V+  G  ++ S   QK  +S+  N + Q   +  
Sbjct: 17  WISTIAFIGAGFVGWGQYNYGDKAGAVAKVGDISITSAELQK-SYSNLFNQYNQ---LFQ 72

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
            K     + ++A+  GL ++ L  LV+ A +       GL      +W  I     F  K
Sbjct: 73  GKF----DEKQAQQFGLQRQALRQLVNQALVLNLANSYGLTVTDQELWDVIKSQSAFS-K 127

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP--SNLLLDQ---AK 183
           D  F    +   L +  +  KEY +   K L     + +   G++P   N L D    + 
Sbjct: 128 DGTFDKSTYAEVLKQNRLTIKEYEESMKKELLIQKTLYLLSSGVKPIEENTLADALGVSD 187

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
           +  ++  + D I L          P++A L  ++EK   +++      ISY    V +  
Sbjct: 188 KISYKILTPDMISLA---------PTDAELKAFWEKRSGDFKTTPSYEISY----VTQTP 234

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVE-QLVFP----------NQKEADEAFQSLKK 292
                S  E+   Y+ N++   + E + +  Q   P           +KEA   +   KK
Sbjct: 235 ITAAPSQKEISDYYDINRQMLKNGEGKVLSLQEAQPIIVAALNEKATEKEALRLYIDYKK 294

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           G   ++   +   +    S+  F+ E      L   I  L+ +  F      S GYVI  
Sbjct: 295 GS--LKPGMKPQTATVTKSVSPFAPE------LTKEITELSTEKAFLKPRKVSNGYVIVK 346

Query: 353 VSNIKPSFTVSFQEVKKDIA----NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
           +  + P+   +++E K D+     N  + TK  E  +  YK        GT+ D ++R+E
Sbjct: 347 LDKMDPARPKTYEEAKTDVMALYLNDTKKTKLQELAQNSYKTFS-----GTTTDYLTRKE 401

Query: 409 --KIVSIDLP 416
             KI  +  P
Sbjct: 402 SAKIAGLSEP 411


>gi|319787632|ref|YP_004147107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317466144|gb|ADV27876.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 654

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 135/683 (19%), Positives = 253/683 (37%), Gaps = 89/683 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  S  W A I + +L +PFL + +  +     G++ V  V              
Sbjct: 1   MLQKLRDRSSGWAATIIIALLMIPFL-FVVDQSYLGGMGANNVAQVKAPPSWWKGAPGFW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                   ++V    F    +Q   +  Q+ G   +      +   ++ILD LV    + 
Sbjct: 60  PVSLLWEHEEVSVEDFRQRLEQARMLARQQQGEAFDPREFEGIENKRRILDELVDEKVML 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE--GINEKEYIDHYTKM 158
                 G+      V   IA  P F   D KF  + +   L+ +      +++ D     
Sbjct: 120 LASARDGVVVSDAAVREYIASIPAFQ-VDGKFDQNAYQMALSSQFPPRTPRQFEDLVRTT 178

Query: 159 LSRTDVVGMFVGGMR-PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL---- 213
           L R  +V + VG     ++  LD+  R   E R V+  ++     P IA+ +  V     
Sbjct: 179 L-RQSLVPVGVGSSAFVTDAELDRLLRLSGETRDVELALM-----PEIAEDTTPVTDADA 232

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
             W+E +  ++ +PE   I Y+     +  +        L+  YE  K+++  PE R   
Sbjct: 233 KAWYEAHTADFMSPEKVAIEYVEVTALQVPEPAAADEATLRERYEAEKQRFGDPERRLAS 292

Query: 274 QLVFPNQKEADE----------AFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYI 320
            ++    +  D           A Q+   G  F  LA E  +       G    + ++ +
Sbjct: 293 HILVRVPEGGDAAAAEAKAKQLAGQAAAPGADFAALAREHSEDPGSRDTGGDLGWVEQGM 352

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                  ++F++ + G+ +  +   FG+ +  +  ++P     F+EV++++A +      
Sbjct: 353 MVEPFEQALFAM-QAGETSGPVKTEFGWHVLQLREVQPGALKPFEEVREELAREQAQADR 411

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
                E   RL +      S  E +  E  + +   L  F+  D+ G  +AA P  ++  
Sbjct: 412 ERAYSELLGRLTDLAYENPSSLEPAANELKLELRK-LGPFSRDDMVG--IAAAPEVKRAA 468

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE--- 497
           F     +D  + D     P  + + +++ E  PA  R L +V  +V+   +  +T++   
Sbjct: 469 FSEELVEDGTASDPIEIGPQHNVV-IRVVEHQPAAARALADVRAEVEAAVRADRTSKAAI 527

Query: 498 -------EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
                  E   K   +      EG+     G   GA    T + NR              
Sbjct: 528 AAAEAALERLRKGEAMAAVVGSEGEVMPLPGLPRGAP-APTPEANRA------------- 573

Query: 551 QVFSGPV-EMVKC----FPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNK 600
            +FS PV E  K     F + +G    VF V     G     P +++        Q+   
Sbjct: 574 -IFSAPVPEEGKATFGRFALPDG-RQAVFAVNAVHPGKPEELPQEQRAMLRQQFAQVDGA 631

Query: 601 DLLDSVIAYLKSQYSVTVHDNLI 623
            +    I  ++SQ+ V V ++ +
Sbjct: 632 TMAQDYIRRVRSQFKVQVDESQL 654


>gi|291276818|ref|YP_003516590.1| hypothetical protein HMU05900 [Helicobacter mustelae 12198]
 gi|290964012|emb|CBG39851.1| putative periplasmic protein [Helicobacter mustelae 12198]
          Length = 490

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 164/412 (39%), Gaps = 75/412 (18%)

Query: 1   MLEIIRKASRTWVAKIFLVVL---FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           MLE +++  +  V  I++ V+   F   + W  SD  F+    + V  VG+ K+    F 
Sbjct: 1   MLEWMQRHKKYLVVTIWVSVIALVFAGMVGWNPSDISFA---GNNVAKVGKIKISDQEFQ 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++++     +Q +G  ++ ++A++  LD   L  L+  A L  F  D+GL      +  
Sbjct: 58  YTFQRVFNEYNQMVGGDLDMDQAKNFQLDNITLQQLIQKAQLQNFALDLGLRVQDREIIE 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++  F  +D  F   ++   L    +N                 V  F   +R S L
Sbjct: 118 VIEKNESFQ-RDGTFDKKLYREVLKNNNLN-----------------VKFFEQSVRDS-L 158

Query: 178 LLDQAKRFY------FENRSV----------DYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           L+ +   F+       E RS+          +Y VL+    P     +   L  ++EK K
Sbjct: 159 LIQKLLEFFPASTTQLERRSIGGSIALTDTIEYEVLSTS--PIKQQITEQKLKDFWEKNK 216

Query: 222 DNYRAP-----EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-----EIRT 271
            NY  P     E  +IS           K E  N  LQ  Y +NK  Y        +   
Sbjct: 217 ANYTNPATVTLEIAKIS---------PSKQEFDNSSLQNFYNENKTLYLDSNGQLQDFSK 267

Query: 272 VEQLV---FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
           VE+ V   + +QK  + A +   K +K  +L + + + L+   D  L + +   + D  +
Sbjct: 268 VEKKVQADYQDQKAKESALRLKPKFRKN-ELKDLKTQKLTIALDEKLSADTITQLKDARI 326

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
            D+I  +  +GD+        G VI         F  + ++ +KD+  Q+ +
Sbjct: 327 GDTINPILYQGDYV------IGNVITKQEKNTKDFASAKEQARKDLQKQIML 372


>gi|261408078|ref|YP_003244319.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
 gi|261284541|gb|ACX66512.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
          Length = 390

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 77/138 (55%), Gaps = 5/138 (3%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           KI+++++E++  Y++NKE + +PE      ++   ++EA+   + LK+G  F  +A+E+ 
Sbjct: 214 KIKVTDEEVKEVYDQNKESFATPEQVRASHILVETKEEAEAIVKQLKEGADFATIAKEKN 273

Query: 305 KSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  +  + G    F +  + D +  ++ F L KK + +  +  SFGY I  V++ K +  
Sbjct: 274 QDATKDTGGDLNFFGRGEM-DPAFEEAAFKL-KKDEISEPVKSSFGYHIIKVTDRKEATN 331

Query: 362 VSFQEVKKDIANQMRITK 379
            + ++ K++I +Q+   K
Sbjct: 332 PTLEDKKEEIRSQLENQK 349


>gi|330952802|gb|EGH53062.1| periplasmic folding chaperone [Pseudomonas syringae Cit 7]
          Length = 627

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 91/420 (21%), Positives = 175/420 (41%), Gaps = 44/420 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDIS----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112
            Q + M  +++   ++ +  +      LD+K+L       L+    L Q   D       
Sbjct: 57  SQAVDMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSD 116

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             +  ++ ++P F   D KFS D F   + + G +  ++     +ML +  ++G    G+
Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLIGQVRAGV 171

Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225
             S  + D Q + F   E ++ D+  L    +PA  D S   +T       ++++   + 
Sbjct: 172 AGSAFVTDAQVEAFARLEKQTRDFASLT---LPA--DTSAVKVTDDEVKAHYDEHAKEFM 226

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
           +PE   + YI         K+++ +++LQA Y+K      S + R    L+  N K  DE
Sbjct: 227 SPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDE 285

Query: 286 AF--------QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
                     Q L KG+ F  LA+E     G S     LG ++ + + D +  +++++L 
Sbjct: 286 QAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLG-YAGKGVYDPAFEEALYALN 344

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           K     PV    FG+ +  +  ++     +F  +K  + N ++     +K  E  K+LE+
Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKSKLTNDLKSQLVEQKFVEVTKQLED 403


>gi|325134515|gb|EGC57160.1| hypothetical protein NMBM13399_0963 [Neisseria meningitidis M13399]
          Length = 512

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/247 (19%), Positives = 108/247 (43%), Gaps = 18/247 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+              
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55

Query: 74  VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            + +E+A   G  +  +  +L+  A L Q  + +G+     ++   I   P FH  + KF
Sbjct: 56  -IQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            H +    L++  ++E ++++      +  ++V +    +   +   +Q  R    NR++
Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNSVLVGDAQAEQLIRLTQVNRTI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E
Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETE 234

Query: 253 LQAEYEK 259
           ++  +E+
Sbjct: 235 VKNAFEE 241


>gi|108803753|ref|YP_643690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764996|gb|ABG03878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 354

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 11/154 (7%)

Query: 249 SNDELQAEYEKNKEKYFS-PEIRTVEQLVF-PNQKE-ADEAFQSLKKGKKFIQLAEE--- 302
           + +E++  YE+N+E  F+ P  R V  ++F P+Q+E A+E  + L++G  F +LA E   
Sbjct: 187 TEEEVRDYYEENREAQFTTPAQRCVRHILFNPDQRERAEEVKRRLEEGADFAELAREYSQ 246

Query: 303 -QGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
             G       LG   + E +P+    ++ F  A++G+    +   FGY +  V +++   
Sbjct: 247 DPGSREKGGDLGCIGRGETVPN--FEEAAFG-AEEGEVVGPVKTQFGYHVIKVYDVRRES 303

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           T    EV+  I  Q+  T  +EK +   +R EE 
Sbjct: 304 TEPLSEVEDRIREQLAATAQAEKFQRWVERQEEL 337


>gi|297374635|emb|CBL42922.1| PpiC-type peptidyl-prolyl cistrans isomerase [Candidatus
           Magnetobacterium bavaricum]
          Length = 323

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 108/243 (44%), Gaps = 42/243 (17%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
           + +L +E I  ++  +   K+    ++  MF G         D  KR   E +  + + L
Sbjct: 36  IVKLGQETITSEQLQEELAKLPP--NIKAMFTGK--------DGLKRLVDEVKKREVLYL 85

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI--LFDVHEKEKKIEISNDELQA 255
             + V    DP        F K     +  E+K+I+ I  L   + + K + ++ +E + 
Sbjct: 86  EAKKVGLDKDPE-------FTK-----KITEFKKINLINTLIQKNVQAKNVTVTPEEAKK 133

Query: 256 EYEKNKEKYFSPE-IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE---------EQGK 305
            Y++N++++  PE +R V  LV   Q EA + +  LKKG  F   A+         E+G 
Sbjct: 134 YYDENQKEFVMPEQVRAVHILVKTEQ-EAKDLYDKLKKGGDFAATAKSVSMDTATAEKGG 192

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
            L   S G        + S  +++F L KKG+ +  +  SFGY I  V + K + T  F+
Sbjct: 193 DLDFFSRGQM------EPSFDEAVFKL-KKGELSTPVKTSFGYHIIKVVDNKEAKTTDFE 245

Query: 366 EVK 368
            VK
Sbjct: 246 SVK 248


>gi|153872856|ref|ZP_02001627.1| peptidyl-prolyl cis-trans isomerase D [Beggiatoa sp. PS]
 gi|152070679|gb|EDN68374.1| peptidyl-prolyl cis-trans isomerase D [Beggiatoa sp. PS]
          Length = 576

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/449 (18%), Positives = 182/449 (40%), Gaps = 60/449 (13%)

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD----QAKR 184
           D KFS   +   L  +G+        +   + R+ +      G+  S L+ D    Q  R
Sbjct: 49  DGKFSPSQYEQVLRYQGMTPT----AFEWEIRRSLLTDQIREGVLRSALVTDYDEQQRTR 104

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
           F  + RS+ Y+++           ++A + ++++++ + Y+  E  RI Y+     +   
Sbjct: 105 FDEQQRSISYLIIPKTRFDKAVTITDADIEKYYQEHLERYKTVEKVRIEYVELSKSDLAN 164

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-----DEAFQ-------SLKK 292
              +S + L+  Y++ K  + +P       ++    KEA     +EA Q        +K 
Sbjct: 165 AEPLSEEMLKERYQERKASFTTPGRWNARHILIEVGKEASVSDKEEAKQKVQDILAKIKA 224

Query: 293 GKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           G+   +LA++         QG  L     G+  K +       +      K GD +  I 
Sbjct: 225 GESVEKLAKQFSDDIGSKNQGGDLGWFDSGTMVKPF-------EEALKSMKVGDISEPIK 277

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMD 402
             FG+ I  + +++P   + F++V++ +   ++  +A       Y ++E+   L   + D
Sbjct: 278 TRFGFHIIELVDVQPEKVLPFEQVREQLEADLKNEQADSAF---YGQVEQMANLAFENPD 334

Query: 403 EISRREKIVSIDLPLVDFAGKD-----------VKGKEVAAIPYKEQLLFRVFGKDDPLS 451
            +      ++++    D+  K            +   +V  I + +++L   F  +    
Sbjct: 335 NLETLRGTLNLERKTTDWFDKTGGSQKNEPDSILSHPKVIEIAFSDEVLKERFNSE---- 390

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
               + + +   + +++KE  PA+ R +++V  D+K   K  +T  E     + L+ +  
Sbjct: 391 ---PIEIAEQQMVVLRLKEHQPAKARPIDDVKDDIKSALKQERTQAETEKLGSNLLDQIK 447

Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           ++G    ++ K    +  T   + R DNE
Sbjct: 448 QKGDP--NVVKEQALNWSTIQWVTRKDNE 474


>gi|154175271|ref|YP_001408420.1| WbnF [Campylobacter curvus 525.92]
 gi|112802934|gb|EAU00278.1| WbnF [Campylobacter curvus 525.92]
          Length = 485

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 79/385 (20%), Positives = 165/385 (42%), Gaps = 40/385 (10%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  +++  +  V  I++ V+ FV   F+ WG  D   + + +++V +VG + +    F 
Sbjct: 1   MITWMQRNKKYLVVTIWISVIAFVGAGFVGWGAYD--LNNNKATSVATVGHRSISVQEFQ 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + Q     +      +  E+A  +G++ +    ++    L  F +DIGL      +  
Sbjct: 59  QKYNQIYEYHNNISDGKLTQEKADELGIENEAFQAVLQENLLLNFADDIGLSVSDDDILK 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     F   D  FS +++   L R  IN  +Y  +    +    +           ++
Sbjct: 119 YIIADKNFQN-DGVFSKNLYYDVLRRARINPNDYEKNLKTAILLDKLYYALNLPATKKDV 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +  A  F  +  S++ I  N   +    D     + + +E  K+NY      +  Y++ 
Sbjct: 178 EMMMASLFMQDKLSIEMIEANENEIKFNEDE----IKELWESNKNNYMT----KTLYVID 229

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV------EQL-----VFPNQKEADEA 286
            ++ + KK +I+   L A Y +NKEKY + + + +      E++     +  ++  A E 
Sbjct: 230 TLYIESKKDDINQTALSAYYNENKEKYKNSDDKIMPFDEVKEEVAKDYNIEQSKTNALEK 289

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           + ++KKG    +LA     SL++ +  +FS + I    + D I          P ++ + 
Sbjct: 290 YIAVKKG----ELATNGSMSLNEDN-ATFSIDEIRGAKVGDVI---------KPFVYDN- 334

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDI 371
           GY+I  + +  P   +S+++ K+ I
Sbjct: 335 GYLIVKIKSTTPPQPMSYEQAKEQI 359


>gi|289679420|ref|ZP_06500310.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           syringae FF5]
 gi|330897791|gb|EGH29210.1| periplasmic folding chaperone [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330939710|gb|EGH43005.1| periplasmic folding chaperone [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 627

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 91/420 (21%), Positives = 175/420 (41%), Gaps = 44/420 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDIS----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112
            Q + M  +++   ++ +  +      LD+K+L       L+    L Q   D       
Sbjct: 57  SQAVDMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSD 116

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             +  ++ ++P F   D KFS D F   + + G +  ++     +ML +  ++G    G+
Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLIGQVRAGV 171

Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225
             S  + D Q + F   E ++ D+  L    +PA  D S   +T       ++++   + 
Sbjct: 172 AGSAFVTDAQVEAFARLEKQTRDFASLT---LPA--DTSAVKVTDDEVKAHYDEHAKEFM 226

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
           +PE   + YI         K+++ +++LQA Y+K      S + R    L+  N K  DE
Sbjct: 227 SPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDE 285

Query: 286 AF--------QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
                     Q L KG+ F  LA+E     G S     LG ++ + + D +  +++++L 
Sbjct: 286 QAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLG-YAGKGVYDPAFEEALYALN 344

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           K     PV    FG+ +  +  ++     +F  +K  + N ++     +K  E  K+LE+
Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQKFVEVTKQLED 403


>gi|78224731|ref|YP_386478.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
 gi|78195986|gb|ABB33753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
          Length = 323

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 92/169 (54%), Gaps = 12/169 (7%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKEADEAFQ 288
           KR+    F   + E++ ++S++E++  YE+NK+K+ + P++     ++  ++ EA +  +
Sbjct: 121 KRVVVEAFLKKKVEEQAKVSDEEMKKFYEENKDKFKTGPQVH-ASHILMKSEDEAQKVLK 179

Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHG 344
            LK+G  F +LA++      +     LG FSK   +P+      +F L K+G+ + ++  
Sbjct: 180 ELKEGGNFEELAKKHSIDSAAAKGGDLGWFSKGSMVPE--FEKVVFGL-KEGETSGIVKT 236

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE---KVKEDYKR 390
            FGY I  ++  +P+   +F EVK+ +   +  +K  E   K+K+D K+
Sbjct: 237 KFGYHIIKLTGKRPAGIRTFDEVKEQLRAAILPSKQQEVFQKLKDDIKK 285


>gi|78776717|ref|YP_393032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497257|gb|ABB43797.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 277

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 16/186 (8%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEK--KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           YK+ Y     +    I   V +K +  KI ISNDEL+  Y+ NKE++   E      ++ 
Sbjct: 89  YKEKYEEVTQRIQKEIAIQVWQKREIDKIAISNDELKKYYDANKEEFVENESVNARHILV 148

Query: 278 PNQKEADEAFQSLK--KG----KKFIQLAEEQGKSLSDIS---LGSFSK-EYIPDVSLAD 327
             + +A      LK  KG     KF++LA+ +    S      LG F+  + +P+ +  D
Sbjct: 149 EKESDAKNIIAELKPLKGDALKNKFMELAKSKSTCASAAEGGDLGYFTAGQMVPEFN--D 206

Query: 328 SIFSL-AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
             FS+ AK+    PV    FGY + ++ + K   T +F EVK  I  ++++ KA   +  
Sbjct: 207 KAFSMKAKEMTLEPV-KTQFGYHVIYIEDKKAKATKNFTEVKSFIEQRLKMEKAKTVMLA 265

Query: 387 DYKRLE 392
             K LE
Sbjct: 266 KMKELE 271


>gi|313668353|ref|YP_004048637.1| peptidyl-prolyl cis-trans isomerase [Neisseria lactamica ST-640]
 gi|313005815|emb|CBN87269.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica
           020-06]
          Length = 512

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/247 (19%), Positives = 106/247 (42%), Gaps = 18/247 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+                 Q +  
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSRPGADYIVRVGDEKIS---------------EQSLNA 54

Query: 74  VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            + +E+A      +  +  +L+  A L Q  + +G+     ++   I   P FH    KF
Sbjct: 55  AIQNEQADGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDAGGKF 114

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++
Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E
Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQAVSETE 234

Query: 253 LQAEYEK 259
           ++  +E+
Sbjct: 235 VKNAFEE 241


>gi|326795821|ref|YP_004313641.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas
           mediterranea MMB-1]
 gi|326546585|gb|ADZ91805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas
           mediterranea MMB-1]
          Length = 613

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/326 (18%), Positives = 134/326 (41%), Gaps = 18/326 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S++ + KI +  + V F ++G+   + S + S TV  V  +++  +  + + 
Sbjct: 1   MLQDIRDRSQSLIVKIIIGFIVVTFALFGVDALVTSFNSSETVAEVDGKEITRTQVLQTA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   +   +G  ++        L ++ LD+L+  A L    + + L     ++   + 
Sbjct: 61  DTQRRQLISMMGNNIDPSLLDENLLQRRALDSLIELAVLKNQADGLELGVSDAQIDSLLV 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL- 179
            +  +   D  F  + +++ +   G         Y + +  + V+      +  S   L 
Sbjct: 121 SAEQYQ-TDGVFDQNKYLNAIRSLGFTPL----AYKERIKESYVLSQLRSAVTESEFALP 175

Query: 180 ---DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
              +       + R+ +Y+  +        D ++  L  +++ ++ ++ +PE  +ISY++
Sbjct: 176 SQVNAISELQNQKRTYEYVQFSLADQTEQTDVTDGELQAYYDDHQQDFVSPEQVKISYVV 235

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                    +++++ ELQ  Y+       + E      L+  + +  DEA       K  
Sbjct: 236 VTTDALATNVKVTDQELQNAYQTEIAGLDTEERDASHILIDTSIRSEDEA-------KSI 288

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPD 322
           I  AE Q K  S  S  S +KEY  D
Sbjct: 289 I--AEIQSKLASGDSFASLAKEYSDD 312


>gi|329923149|ref|ZP_08278648.1| putative foldase protein PrsA [Paenibacillus sp. HGF5]
 gi|328941591|gb|EGG37877.1| putative foldase protein PrsA [Paenibacillus sp. HGF5]
          Length = 398

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 76/138 (55%), Gaps = 5/138 (3%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           KI+++ +E++  Y++NKE + +PE      ++   ++EA+   + LK+G  F  +A+E+ 
Sbjct: 214 KIKVTGEEVKEVYDQNKESFATPEQVRASHILVETKEEAEAIVKQLKEGADFATIAKEKN 273

Query: 305 KSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  +  + G    F +  + D +  ++ F L KK + +  +  SFGY I  V++ K +  
Sbjct: 274 QDATKDTGGDLNFFGRGEM-DPAFEEAAFKL-KKDEISEPVKSSFGYHIIKVTDRKEATN 331

Query: 362 VSFQEVKKDIANQMRITK 379
            + ++ K++I +Q+   K
Sbjct: 332 PTLEDKKEEIRSQLENQK 349


>gi|57168166|ref|ZP_00367305.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli RM2228]
 gi|57020540|gb|EAL57209.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli RM2228]
          Length = 273

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 13/154 (8%)

Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291
           IL +V++++    I++ + +++A YE+NKEKY  P     + ++  +++EA +  + LK 
Sbjct: 97  ILVNVYQEKILNSIKVDSSKVKAFYEQNKEKYIKPAAVQAKHILVSSEQEAKDIIKELKG 156

Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            KGK    KF QLA+E+    G       LG F +  +      D+ F+L      T  +
Sbjct: 157 LKGKALDDKFSQLAQEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 215

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +FGY +    N +    + F +VKK I N ++
Sbjct: 216 KTNFGYHVILKENSRAKEQIKFDDVKKGIENGLK 249


>gi|213521163|gb|ACJ50520.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens]
          Length = 279

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 127/272 (46%), Gaps = 28/272 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFIN 58
           ML+ IR  S+ W+AK  + ++       G+ +A+F  SG++   V  V  +++  +    
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIVALMAFTGI-EAIFQASGNNKQDVAKVNGEEITQTELSQ 59

Query: 59  SWKQELGMISQKIG-----FVVNSERARSVGLDKKILDN--LVSGATLDQFIEDIGL-EA 110
           +   +   + Q++G      +++ +  R   L K ++D   L+ GA   +F    G  EA
Sbjct: 60  AVDMQRRQLMQQLGKDFDASLLDEKLLRDAAL-KGLIDRKLLLQGAADSKF----GFSEA 114

Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
              +V   I ++P F   D KF+ + F   + + G +  ++     +ML++  ++G    
Sbjct: 115 ALDQV---ILQTPEFQ-VDGKFNAERFDQVVRQLGYSRLQF----RQMLTQEMLIGQVRA 166

Query: 171 GMRPSNLLLDQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
           G+  S  + D A+   F   E ++ D+  +N +  PA    ++  +  +++++   +  P
Sbjct: 167 GIAGSGFVTD-AEVLAFARLEKQTRDFATVNIKADPAAVKLTDDEVKAYYDQHAKEFMTP 225

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
           +   I Y+         ++ + +DELQA YEK
Sbjct: 226 DQVVIDYLELKKSSFFDQVTVKDDELQAAYEK 257


>gi|330972584|gb|EGH72650.1| periplasmic folding chaperone [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 627

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 94/427 (22%), Positives = 179/427 (41%), Gaps = 58/427 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDIS----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDN-----------LVSGATLDQF-IED 105
            Q + M  +++   ++ +  +      LD+K+L             L+ GAT  +F   D
Sbjct: 57  SQAVDMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSD 116

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
             L+        ++ ++P F   D KF+ D F   + + G +  ++     +ML +  ++
Sbjct: 117 AALDQ-------QLLQAPEFQ-VDGKFNADRFDQVIRQLGYSRLQF----RQMLGQEMLI 164

Query: 166 GMFVGGMRPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFE 218
           G    G+  S  + D Q + F   E ++ D+  L    +PA  D S   +T       ++
Sbjct: 165 GQVRAGVAGSAFVTDAQVEAFARLEKQTRDFASLT---LPA--DTSAVKVTDDEVKAHYD 219

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           ++   + +PE   + YI         K+++ +++LQA Y+K      S + R    L+  
Sbjct: 220 EHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEV 278

Query: 279 NQKEADEAF--------QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLA 326
           N K  DE          Q L KG+ F  LA+E     G S     LG ++ + + D +  
Sbjct: 279 NDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLG-YAGKGVYDPAFE 337

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +++++L K     PV    FG+ +  +  ++     SF  +K  + N ++     +K  E
Sbjct: 338 EALYALNKDQVSQPV-RTDFGWHLIKLLGVEAPSVPSFASLKGKLTNDLKSQLVEQKFVE 396

Query: 387 DYKRLEE 393
             K+LE+
Sbjct: 397 VTKQLED 403


>gi|288817631|ref|YP_003431978.1| hypothetical protein HTH_0310 [Hydrogenobacter thermophilus TK-6]
 gi|288787030|dbj|BAI68777.1| hypothetical protein HTH_0310 [Hydrogenobacter thermophilus TK-6]
 gi|308751229|gb|ADO44712.1| Formiminotransferase domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 444

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 82/383 (21%), Positives = 159/383 (41%), Gaps = 83/383 (21%)

Query: 25  FLIWGLSDALFSVSGSSTVVSVGRQKVP----FSSFINSWKQELGMISQKIGFVVNSERA 80
           F +W     LF       + SVG++ V         +  +++EL   S      + S   
Sbjct: 23  FFLW-----LFFTGSVRDITSVGKKCVAEVNGSCITLRDYRRELLRFSN-----IQSRDL 72

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
             V + K++++NL++   L Q    +G  A    V   I   P F  +   FS   +   
Sbjct: 73  EEV-IKKQVIENLITQELLYQKARSLGFYASDEEVVSVIKSDPTFQ-EGGVFSASKYKEM 130

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           LAR G+   EY D+  +ML+   ++ +       +++ L +A++    N +V   +L+ +
Sbjct: 131 LARLGLEPGEYEDYIRRMLTVQKLLALV-----SNSVYLSEAEKNI--NLAVQSTLLSGK 183

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
               I  PS+                     +SY              + +E+ + YEKN
Sbjct: 184 LY--IITPSDV-------------------EVSYT------------PTQEEMMSFYEKN 210

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
           KE +  PE + V      ++ + +E ++++K+GK+       QG          +++  +
Sbjct: 211 KELFRRPEKKLVRVWAEKDKAKVEEIYRAIKEGKQV------QG----------YTEYLL 254

Query: 321 PDVS------LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
           PD +      ++  +  L +K        G   Y+I ++  ++P+   SF+EVK+ I + 
Sbjct: 255 PDDANRLPKGVSSEVSKLDQKDGILVTKEGD-EYLIVYLYRVEPAGIRSFEEVKEQIRSA 313

Query: 375 M----RITKASEKVKEDYKRLEE 393
           +    + +   +K +E YKRL E
Sbjct: 314 LIDKRKASLLRDKAQEIYKRLTE 336


>gi|66044996|ref|YP_234837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
 gi|63255703|gb|AAY36799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
          Length = 627

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 91/420 (21%), Positives = 175/420 (41%), Gaps = 44/420 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDIS----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112
            Q + M  +++   ++ +  +      LD+K+L       L+    L Q   D       
Sbjct: 57  SQAVDMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADARFSFSD 116

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             +  ++ ++P F   D KF+ D F   + + G +  ++     +ML +  ++G    G+
Sbjct: 117 AALDQQLLQTPEFQ-VDGKFNADRFDQVIRQLGYSRLQF----RQMLGQEMLIGQVRAGV 171

Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225
             S  + D Q + F   E ++ D+  L    +PA  D S   +T       ++++   + 
Sbjct: 172 AGSAFVTDAQVEAFARLEKQTRDFASLT---LPA--DTSAVKVTDDEVKAHYDEHAKEFM 226

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
           +PE   + YI         K+++ +++LQA Y+K      S + R    L+  N K  DE
Sbjct: 227 SPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDE 285

Query: 286 AF--------QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
                     Q L KG+ F  LA+E     G S     LG ++ + + D +  +++++L 
Sbjct: 286 QAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLG-YAGKGVYDPAFEEALYALN 344

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           K     PV    FG+ +  +  ++     SF  +K  + N ++     +K  E  K+LE+
Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPSFASLKGKLTNDLKSQLVEQKFVEVTKQLED 403


>gi|322378577|ref|ZP_08053017.1| conserved hypothetical secreted protein [Helicobacter suis HS1]
 gi|321148985|gb|EFX43445.1| conserved hypothetical secreted protein [Helicobacter suis HS1]
          Length = 481

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 118/273 (43%), Gaps = 26/273 (9%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+  ++K  +  V  I++  + FV   + G     FS++  + V  VGR  +        
Sbjct: 1   MISWMQKHKKYLVVTIWISTIAFVAAGMIGWGQYSFSMANGN-VAKVGRVLISEEELDRE 59

Query: 60  WKQELGMISQKI-GFVVNSER-ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++ L + SQ I  F   SE+  +++GL+   L  L++ A L     D+GL      V  
Sbjct: 60  HRRLLDIYSQSIPNFKDLSEKEVKALGLEHNALTLLINQALLKNLALDLGLGVSGSEVIA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI +S  F  + +      F   L ++ + E  Y     +   +  ++   +  + P  +
Sbjct: 120 EIQKSTAFQNEGH------FDEALYKKILQENRYRPSAFEEGIKNALLLQKISALFPQAI 173

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYRAPEYKRI 232
              + + F +  R  D + +       + +P   V+TQ     ++ ++K+ Y+ P     
Sbjct: 174 TPLEEEAFLWPLRLQDQVRIE------VLEPKEVVVTQQALRDYYNQHKNTYKKPP---- 223

Query: 233 SYILFDVHEKEKKIEISNDE-LQAEYEKNKEKY 264
           SY L   H  +  IE +  E LQA YEKNK+ Y
Sbjct: 224 SYTLAASHITDTDIEPAKQEQLQAYYEKNKQVY 256


>gi|322380902|ref|ZP_08054980.1| peptidylprolyl isomerase [Helicobacter suis HS5]
 gi|321146670|gb|EFX41492.1| peptidylprolyl isomerase [Helicobacter suis HS5]
          Length = 481

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 118/273 (43%), Gaps = 26/273 (9%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+  ++K  +  V  I++  + FV   + G     FS++  + V  VGR  +        
Sbjct: 1   MISWMQKHKKYLVVTIWISTIAFVAAGMIGWGQYSFSMANGN-VAKVGRVLISEEELDRE 59

Query: 60  WKQELGMISQKI-GFVVNSER-ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++ L + SQ I  F   SE+  +++GL+   L  L++ A L     D+GL      V  
Sbjct: 60  HRRLLDIYSQSIPNFKDLSEKEVKALGLEHNALTLLINQALLKNLALDLGLGVSGSEVIA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI +S  F  + +      F   L ++ + E  Y     +   +  ++   +  + P  +
Sbjct: 120 EIQKSTAFQNEGH------FDEALYKKILQENRYRPSAFEEGIKNALLLQKISALFPQAI 173

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYRAPEYKRI 232
              + + F +  R  D + +       + +P   V+TQ     ++ ++K+ Y+ P     
Sbjct: 174 TPLEEEAFLWPLRLQDQVRIE------VLEPKEVVVTQQALRDYYNQHKNTYKKPP---- 223

Query: 233 SYILFDVHEKEKKIEISNDE-LQAEYEKNKEKY 264
           SY L   H  +  IE +  E LQA YEKNK+ Y
Sbjct: 224 SYTLAASHITDTDIEPAKQEQLQAYYEKNKQVY 256


>gi|154684591|ref|YP_001419752.1| YacD [Bacillus amyloliquefaciens FZB42]
 gi|154350442|gb|ABS72521.1| YacD [Bacillus amyloliquefaciens FZB42]
          Length = 296

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           K I+IS+ E+Q+ Y KNKE Y   +   +  +V  N+ EAD     LK G  F  +A E+
Sbjct: 130 KDIDISDKEMQSFYNKNKELYHFDDSYRIRHIVVKNKDEADRVLADLKGGSSFEAVAAER 189

Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                      D+   + ++E IP   + ++      +    P I  S GY +  +    
Sbjct: 190 STDRYTSQYGGDLGFVTENQENIPQAYITEAKKLKEDEWSVEP-IKVSSGYAVIQLKEKL 248

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384
            S T S+ EVK  I  Q+ + +  +K 
Sbjct: 249 KSRTFSYNEVKSQIRRQIAMEQLGDKA 275


>gi|189426095|ref|YP_001953272.1| hypothetical protein Glov_3046 [Geobacter lovleyi SZ]
 gi|189422354|gb|ACD96752.1| conserved hypothetical protein [Geobacter lovleyi SZ]
          Length = 531

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/426 (20%), Positives = 166/426 (38%), Gaps = 60/426 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPF-----LIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML++IRK   + V K   V++ + F     L+WG  D     S +     V R  +   +
Sbjct: 1   MLDVIRKKKESVVIKAVFVIIVLSFIGTIFLVWGKGDEGMGRS-AGYAAKVDRTTISLEA 59

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           + N+++       Q  G     E  + + L ++ +D L+    + +  +  G+      +
Sbjct: 60  YQNAYQNMAETYRQIFGANFTPELEKQLNLRQQAIDRLIDSTLIIKAAKSQGVSVSKEEI 119

Query: 116 WGEIARSPLFHG-------------KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
              IA    F               K N+ + D F     RE + EK          +R 
Sbjct: 120 SAAIAGMSAFQQNGSFDFGLYQQMLKANRITPDAFEESKKRELLIEK----------TRK 169

Query: 163 DVVGMFVGGMRPSNLLLDQA-KRFYFENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEK 219
            V+   V       +  D+A K+F+ E   ++  Y   +   V A     +A L  +  K
Sbjct: 170 AVMDKVV-------ISDDEALKQFHKEQDKLELSYASFSAADVSAEVKLGDADLQDYLTK 222

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS------PEIRTVE 273
             + +++PE   +S+ + +   +     ++ +E ++ Y KN ++Y        P  +  E
Sbjct: 223 NAEKFKSPEKIALSWFVLENSGQSHVQAVTAEEQESFYRKNMDRYVDKDNAPLPYEQVKE 282

Query: 274 QLVFPNQKE----------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP-- 321
           ++    Q++          AD  FQ++K G   + +A + G    D  L S +       
Sbjct: 283 RVKADAQRQKAAKALYEKAADTLFQNIKSGDLGL-VAAKLGAKTQDTPLFSANAAPAALA 341

Query: 322 -DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
            + +L    F L K+G+    +  + G  I  V   K +      +V+  +  Q+R  KA
Sbjct: 342 GETALLKKAFEL-KQGELGGPVETAKGIYIFKVKEKKAAELPPLAQVRTTVEQQLRALKA 400

Query: 381 SEKVKE 386
           +E  K+
Sbjct: 401 AELAKQ 406


>gi|326390841|ref|ZP_08212393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993100|gb|EGD51540.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 301

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 28/168 (16%)

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           LFD + K+  ++++ +EL+  YE NKE++   E+     ++  ++K A++ +  L KG+ 
Sbjct: 134 LFDEYTKD--VKVTEEELKKYYEDNKEQF---EVVKASHILVADEKTAEDIYNRLMKGED 188

Query: 296 FIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           F  LA+E         QG  L +   G    E+         +FSL KKG+ +  +   +
Sbjct: 189 FATLAKEYSIDTATKDQGGDLGEFPHGVMVSEF------DQVVFSL-KKGEISKPVKTDY 241

Query: 347 GYVIAHVSN--IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY I       IKP     F EVK  I + +   K ++ +KE Y  LE
Sbjct: 242 GYHIIKSEGVAIKP-----FNEVKDAIESYLLNDKKNQVIKEKYDALE 284


>gi|307265095|ref|ZP_07546655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919893|gb|EFN50107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 301

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 28/168 (16%)

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           LFD + K+  ++++ +EL+  YE NKE++   E+     ++  ++K A++ +  L KG+ 
Sbjct: 134 LFDEYTKD--VKVTEEELKKYYEDNKEQF---EVVKASHILVADEKTAEDIYNRLMKGED 188

Query: 296 FIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           F  LA+E         QG  L +   G    E+         +FSL KKG+ +  +   +
Sbjct: 189 FATLAKEYSIDTATKDQGGDLGEFPHGVMVSEF------DQVVFSL-KKGEISKPVKTDY 241

Query: 347 GYVIAHVS--NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY I       IKP     F EVK  I   +   K ++ +KE Y  LE
Sbjct: 242 GYHIIKSEGITIKP-----FDEVKDAIEGYLLDDKKNQVIKEKYDALE 284


>gi|148378054|ref|YP_001252595.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|153931321|ref|YP_001382453.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936847|ref|YP_001386006.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
           str. Hall]
 gi|153940453|ref|YP_001389411.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F
           str. Langeland]
 gi|168181156|ref|ZP_02615820.1| peptidil-prolyl isomerase family protein [Clostridium botulinum
           NCTC 2916]
 gi|170757604|ref|YP_001779674.1| peptidil-prolyl isomerase family protein [Clostridium botulinum B1
           str. Okra]
 gi|226947272|ref|YP_002802363.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A2
           str. Kyoto]
 gi|148287538|emb|CAL81602.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           A str. ATCC 3502]
 gi|152927365|gb|ABS32865.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|152932761|gb|ABS38260.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
           str. Hall]
 gi|152936349|gb|ABS41847.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F
           str. Langeland]
 gi|169122816|gb|ACA46652.1| peptidil-prolyl isomerase family protein [Clostridium botulinum B1
           str. Okra]
 gi|182668005|gb|EDT79984.1| peptidil-prolyl isomerase family protein [Clostridium botulinum
           NCTC 2916]
 gi|226843846|gb|ACO86512.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A2
           str. Kyoto]
 gi|295317521|gb|ADF97898.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F
           str. 230613]
          Length = 247

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 7/131 (5%)

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI---SLGSFS 316
           NKE++ + E+ T   ++  +++EA+  ++ +K G  F + AE+  K  S     SLG+F+
Sbjct: 106 NKEEFRTQELITARHILVDSEEEANNIYEEIKNGLDFSEAAEKYSKCPSKAQGGSLGTFT 165

Query: 317 K-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           + + +P+   A      A+    T  I   FGY +  V NIK S    F EVK  I N++
Sbjct: 166 RGQMVPEFEKA---VLEAEVDKVTQAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKL 222

Query: 376 RITKASEKVKE 386
              K +++  E
Sbjct: 223 LQEKQNQQYNE 233


>gi|322804319|emb|CBZ01869.1| foldase protein PrsA precursor [Clostridium botulinum H04402 065]
          Length = 247

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 7/131 (5%)

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI---SLGSFS 316
           NKE++ + E+ T   ++  +++EA+  ++ +K G  F + AE+  K  S     SLG+F+
Sbjct: 106 NKEEFRTQELITARHILVDSEEEANSIYEEIKNGLDFSEAAEKYSKCPSKAQGGSLGTFT 165

Query: 317 K-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           + + +P+   A      A+    T  I   FGY +  V NIK S    F EVK  I N++
Sbjct: 166 RGQMVPEFEKA---VLEAEVDKVTEAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKL 222

Query: 376 RITKASEKVKE 386
              K +++  E
Sbjct: 223 LQEKQNQQYNE 233


>gi|168185280|ref|ZP_02619944.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Bf]
 gi|237793360|ref|YP_002860912.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Ba4
           str. 657]
 gi|182671671|gb|EDT83632.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Bf]
 gi|229264108|gb|ACQ55141.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Ba4
           str. 657]
          Length = 247

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 7/131 (5%)

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI---SLGSFS 316
           NKE++ + E+ T   ++  +++EA+  ++ +K G  F + AE+  K  S     SLG+F+
Sbjct: 106 NKEEFRTQELITARHILVDSEEEANNIYEEIKNGLDFSEAAEKYSKCPSKAQGGSLGTFT 165

Query: 317 K-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           + + +P+   A      A+    T  I   FGY +  V NIK S    F EVK  I N++
Sbjct: 166 RGQMVPEFEKA---VLEAEVDKVTQAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKL 222

Query: 376 RITKASEKVKE 386
              K +++  E
Sbjct: 223 LQEKQNQQYNE 233


>gi|114566203|ref|YP_753357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337138|gb|ABI67986.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 324

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 15/145 (10%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           I I  +ELQ  Y++N   +       +  ++    KEA E    L++G  F QLA+E   
Sbjct: 164 ITIEEEELQQYYQENIASFQEAAGMQISHILVATDKEARELLTQLQQGADFAQLAQEHSS 223

Query: 306 SLSDISLGSF-----SKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNIKP 358
             S    G       +  Y+P+    ++   L K G+ T  PV    FGY I     ++P
Sbjct: 224 CASKAQGGYLGVVNENSNYVPE--FKNAALQL-KAGEITQEPV-KSDFGYHIIKAGQLQP 279

Query: 359 SFTVSFQEVKKDIANQMRITKASEK 383
           + T SF EVK    NQ+R+    EK
Sbjct: 280 TTTKSFDEVK----NQIRMQLEKEK 300


>gi|313679732|ref|YP_004057471.1| ppic-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
           profundus DSM 14977]
 gi|313152447|gb|ADR36298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
           profundus DSM 14977]
          Length = 308

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 65/137 (47%), Gaps = 16/137 (11%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE- 302
           +++ IS    +  Y  ++E Y  PE      ++ P+++EA++    LK G  F +LA E 
Sbjct: 149 QRLRISEAATRMLYLLDREAYAEPEQICTAHILVPSREEAEDVIARLKGGADFAELAREV 208

Query: 303 --------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
                   +G  L  ++LG F  E+        +  +L + G  +  +   FG+ +  ++
Sbjct: 209 SQDPGSAPRGGDLGCVALGRFVPEF------ERAALAL-QPGQVSEPVQTQFGWHVIRMN 261

Query: 355 NIKPSFTVSFQEVKKDI 371
           + +P+  + ++EV+  I
Sbjct: 262 DRRPARVLPYEEVRGQI 278


>gi|257459731|ref|ZP_05624840.1| foldase protein PrsA 2 [Campylobacter gracilis RM3268]
 gi|257443156|gb|EEV18290.1| foldase protein PrsA 2 [Campylobacter gracilis RM3268]
          Length = 274

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 19/165 (11%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           E+ K + +S++E +  Y++NK+ +  P+  T   ++  ++K A  A   L K KK   L 
Sbjct: 105 EQAKDVSVSDEEAKKIYDENKQNFMQPDSVTASHILVADEKAAKNAIAKLSKVKKE-NLK 163

Query: 301 EEQGKSLSDIS-----------LGSFSKEY-IPDVSLADSIFSLAKKGDF--TPVIHGSF 346
           EE  K   +IS           LGSF K   +P+   A   F+L K G+   TPV    F
Sbjct: 164 EEFNKLAKEISIDPSAKENGGDLGSFGKGMMVPEFEKA--AFAL-KDGEMSKTPV-KTQF 219

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           GY + +  + K + T+ F++VK  I NQ+  +K ++K+ +    L
Sbjct: 220 GYHVIYKESSKKAETMPFEKVKDLIKNQLLPSKVNKKIDDKANEL 264


>gi|71737764|ref|YP_273939.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558317|gb|AAZ37528.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 627

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/421 (20%), Positives = 172/421 (40%), Gaps = 46/421 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDIS----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERAR---SVGLDKKILDN-----------LVSGATLDQF-IED 105
            Q + M  +++   +  +  +   S  LD+K+L             L+ GAT  +F   D
Sbjct: 57  SQAVDMQRRQLAQQLAQQLGKDFDSAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSD 116

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
             L+        ++ ++P F   D KFS D F   + + G +  ++     +ML +  ++
Sbjct: 117 AALDQ-------QLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLI 164

Query: 166 GMFVGGMRPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           G    G+  S  + D Q   F   E ++ D+  L           ++  +   ++++   
Sbjct: 165 GQVRAGVAGSAFVTDAQVDAFARLEKQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKE 224

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           + +PE   + YI         K+++ +++LQA Y+K      S + R    L+  N K  
Sbjct: 225 FMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLN 283

Query: 284 DEAF--------QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSL 332
           DE          Q L KG+ F  LA+E  +     S G    ++ + + D +  D++++L
Sbjct: 284 DEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYAL 343

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            K     PV    FG+ +  +  ++     +F  +K  +   ++     +K  E  K+LE
Sbjct: 344 NKDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLE 402

Query: 393 E 393
           +
Sbjct: 403 D 403


>gi|289642554|ref|ZP_06474697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Frankia symbiont of
           Datisca glomerata]
 gi|289507642|gb|EFD28598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Frankia symbiont of
           Datisca glomerata]
          Length = 391

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE----Q 303
           +++D+L + YE ++  +  P  R +  +V   ++EAD+  +  + G  F  LA E    +
Sbjct: 174 VTDDQLPSYYESHRADFAVPAQRHLRNIVVATREEADQVVRRARDGADFAALAGETSLDE 233

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               S   LG  +   + D   A + F++     F PV    +G+ +  V   +P+   S
Sbjct: 234 STRSSQGDLGFVTASQL-DAEYAKAAFAVPVGSVFGPV-QTRYGWNVGQVLEDRPASQPS 291

Query: 364 FQEVKKDIANQMRITKA 380
           F++VK  + + +R  +A
Sbjct: 292 FEQVKDQVRDALRSERA 308


>gi|330721964|gb|EGG99902.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC2047]
          Length = 471

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/372 (20%), Positives = 152/372 (40%), Gaps = 84/372 (22%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE-----QLVFPNQKEADEA- 286
           SY+  + +E    I IS+ E+QA YE+N   Y S E   +E     Q  F +  + DEA 
Sbjct: 35  SYLTINANELAADIVISDAEVQAYYEENLADYMSEESLKIEYLELKQADFASNIDVDEAE 94

Query: 287 ----FQS--------------------------------------LKKGKKFIQLAE--- 301
               +Q                                       +K G+ F +LA+   
Sbjct: 95  IEQLYQQETDALAAQQERRAAHILITEEARSSNEAEQLIIELQNKIKAGEDFAELAKRYS 154

Query: 302 ------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
                 E G  L  +  G+F  E+         +FSL  +G+ + ++   FGY +  +  
Sbjct: 155 EDPGSAENGGDLGFVEKGAFVPEF------EQVLFSL-NEGEVSDIVETEFGYHLIRLEE 207

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           ++      F+  ++ +A ++R  KA E+     + L+        + E ++ +    + +
Sbjct: 208 LRTPEAEPFEMARERLAGELRFRKAEEEFVAAAEELQNDSFSAGDLVEPAQNQ---GLSI 264

Query: 416 PLVDFAGKDVKGKEVAA------IPYKEQLLFRVFGKD-DPLSKDHTVALPDGSYMWVQI 468
              +F  +  +G  +AA      + + ++LL      D   LSKDH           +++
Sbjct: 265 QTTEFFSRQ-QGSGIAAFEKVRRVAFSDELLTEGNNSDLIELSKDHVAV--------IRV 315

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
           K+  P++ + LEEV +D++   K  + A++ + K  + +L   ++GK  +    + G  L
Sbjct: 316 KQHNPSKPQALEEVASDIRSTLK-ARAAQQNAQKMGEQILVELRDGKTLQQASDDYGYPL 374

Query: 529 LTTNQINRMDNE 540
            +   +NR+ N+
Sbjct: 375 NSYQGVNRIAND 386


>gi|226355582|ref|YP_002785322.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus deserti
           VCD115]
 gi|226317572|gb|ACO45568.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor
           [Deinococcus deserti VCD115]
          Length = 626

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 78/145 (53%), Gaps = 8/145 (5%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEE 302
           + +++++ ++QA Y +NK ++ SP   TV++  F ++ +A  AF++   G+  F   A +
Sbjct: 419 RNVKVTDADVQAFYTQNKAQFQSPATATVDEASFKDRSKA-LAFRNTWNGQGSFATAASK 477

Query: 303 QGKSLSD-----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           QG ++S+        G   +E    V  A ++ S A +G  + V+     Y +A+V+++K
Sbjct: 478 QGGTVSERGSVTAGDGKLGQELNAAVFSARTLKS-AGEGSLSDVVKVGERYSVAYVTDLK 536

Query: 358 PSFTVSFQEVKKDIANQMRITKASE 382
           P+ T     V+  I +Q+  TK +E
Sbjct: 537 PATTQPLSAVRSQIESQVLATKRNE 561


>gi|315452770|ref|YP_004073040.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter felis ATCC
           49179]
 gi|315131822|emb|CBY82450.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter felis ATCC
           49179]
          Length = 482

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 165/407 (40%), Gaps = 53/407 (13%)

Query: 5   IRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
           ++K  +  V  I++  + F+   + G     FS++ S +V  VGR  +         K+ 
Sbjct: 1   MQKHKKYLVVTIWISTIAFIAAGMIGWGQYSFSMA-SGSVAKVGRVLITSEELEMERKRL 59

Query: 64  LGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           +   SQ I     ++ ++  ++GL+K  L  L++ A L     D+GL      +  EI +
Sbjct: 60  VDAYSQSIPNFKDLDEKQIAAMGLEKTALRMLINQAYLKNLALDLGLGVSDAEIATEIQK 119

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF----VGGMRPSNL 177
           S LF  KD  F  D++   L           +HY   L   +V        V G+ PS  
Sbjct: 120 SALFQ-KDGHFDVDLYKKVLQD---------NHYRPALFEENVKNALILQKVSGLFPSAT 169

Query: 178 LLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
              + + F +  +  D I   +L   H P   + S   L  +++++K+ Y+ P      Y
Sbjct: 170 TPLEKEAFTYPLKIQDRISIKILEASHAPIQLEES--ALKAYYDQHKNTYKKP----TRY 223

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE--IRTVEQ-----LVFPNQKEADE-- 285
            L  +  K K   +    L+  Y+  K  Y   +  + T E+     +   NQ +A E  
Sbjct: 224 TLQTLWIKPKTATLDQSILRKYYQDRKSNYTDAQGKLETFEKAKDRVIHDYNQAQAKENA 283

Query: 286 --AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
              + +LK+G         + +S +D+  G+       D+   D+     + G+    + 
Sbjct: 284 LKQYLALKRGN-----LNPKKESFTDLPYGT-------DI---DTKIIAMQPGEVLKPLE 328

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
              GY++  +         SFQE K +I   ++     + +K++ ++
Sbjct: 329 YKEGYLVVKLVEKSSGLLKSFQEAKSEIMATLQAEAQQKWLKQEAQK 375


>gi|304406731|ref|ZP_07388386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344264|gb|EFM10103.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
          Length = 362

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 6/144 (4%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           + +I I++ E++  Y +N E    PE      ++   + EAD   + L  G  F  +A++
Sbjct: 200 QSRIHITDQEVRDYYTENLEYITQPEQVRASHILVETKAEADIIVKELNNGGDFATIAKQ 259

Query: 303 Q----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +    G   +   LG F +  + D S  D+ FSL K G+ +  +   FGY I  V++ K 
Sbjct: 260 KSLDTGSKNAGGDLGYFERG-VMDQSFEDAAFSL-KVGEISKPVKSEFGYHIILVTDHKA 317

Query: 359 SFTVSFQEVKKDIANQMRITKASE 382
           + T +F+E K  I   +   K  E
Sbjct: 318 AVTPTFEEEKATIREMLTTEKIYE 341


>gi|297519828|ref|ZP_06938214.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           OP50]
          Length = 141

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 7/138 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V 
Sbjct: 60  NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118

Query: 117 GEIARSPLFHGKDNKFSH 134
             I  +P F   D KF +
Sbjct: 119 QAIFATPAFQ-VDGKFDN 135


>gi|305431687|ref|ZP_07400856.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli JV20]
 gi|304445282|gb|EFM37926.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli JV20]
          Length = 273

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 13/154 (8%)

Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291
           IL +V++++    I++ + +++A YE+NKEKY  P     + ++  +++EA +  + LK 
Sbjct: 97  ILVNVYQEKILNSIKVDSSKVKAFYEQNKEKYIKPAAVQAKHILVSSEQEAKDIIKELKG 156

Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            KGK     F QLA+E+    G       LG F +  +      D+ F+L      T  +
Sbjct: 157 LKGKALDDNFSQLAQEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 215

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +FGY +    N +    + F +VKK I N ++
Sbjct: 216 KTNFGYHVILKENSRAKEQIKFDDVKKGIENGLK 249


>gi|289627508|ref|ZP_06460462.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649941|ref|ZP_06481284.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868371|gb|EGH03080.1| periplasmic folding chaperone [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 627

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/421 (20%), Positives = 171/421 (40%), Gaps = 46/421 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDIS----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDN-----------LVSGATLDQF-IED 105
            Q + M  +++   +  +  +      LD+K+L             L+ GAT  +F   D
Sbjct: 57  SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSD 116

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
             L+        ++ ++P F   D KFS D F   + + G +  ++     +ML +  ++
Sbjct: 117 AALDQ-------QLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLI 164

Query: 166 GMFVGGMRPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           G    G+  S  + D Q   F   E ++ D+  L           ++  +   ++++   
Sbjct: 165 GQVRAGVAGSAFVTDAQVDAFARLEKQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKE 224

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           + +PE   + YI         K+++ +++LQA Y+K      S + R    L+  N K  
Sbjct: 225 FMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLN 283

Query: 284 DEAF--------QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSL 332
           DE          Q L KG+ F  LA+E  +     S G    ++ + + D +  DS+++L
Sbjct: 284 DEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDSLYAL 343

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            K     PV    FG+ +  +  ++     +F  +K  +   ++     +K  E  K+LE
Sbjct: 344 NKDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLE 402

Query: 393 E 393
           +
Sbjct: 403 D 403


>gi|77164285|ref|YP_342810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|254434865|ref|ZP_05048373.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27]
 gi|76882599|gb|ABA57280.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|207091198|gb|EDZ68469.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27]
          Length = 304

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 26/148 (17%)

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
           Y+ N EKY  PE   V  ++   ++ ++E  + L   +K  QLA  + K  S+++L    
Sbjct: 135 YQANPEKYQQPERVKVSHILIKTEERSEEEAKKL--AEKVRQLALTEEKPFSELAL---- 188

Query: 317 KEYIPDVSLA-------------------DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            EY  D SL                    ++ F+L + G+ +PV+   FG+ I  +   +
Sbjct: 189 -EYSEDPSLEKNKGDLGFIVKGVTTKPFEEAAFALEQPGEISPVVKSRFGFHIIRLEERQ 247

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVK 385
              T SF+EVK+ +  ++R T  ++ V+
Sbjct: 248 APKTKSFEEVKERLVEKIRETHLNQVVQ 275


>gi|328676007|gb|AEB28682.1| Peptidyl-prolyl cis-trans isomerase ppiD [Francisella cf. novicida
           3523]
          Length = 477

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 24/228 (10%)

Query: 97  ATLDQFIEDIGLEADHGR---------VWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           A L Q I+   + AD  R         +   I  +P+F  KD KFS D     +A  G  
Sbjct: 72  AILSQMIDQYLILADAQRHNIVVSKLALQSAIFTNPMFFDKDGKFSADKLKQVVAYLG-- 129

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR----FYFENRSVDYIVLNNRHVP 203
               +D   +ML++     +    +  ++L+ D   +     Y  N+ +DY  ++     
Sbjct: 130 ---GMDRLEQMLTQNIQATIIPKTIVDTSLVTDYDTKSLASIYSVNKYIDYFKVSPADFK 186

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE- 262
           +   PS   L  +++ +K+ Y  P  K ISY +        K +I  DE+++ YE +KE 
Sbjct: 187 SQIKPSQQDLQSYYDVHKNEYITPAQKTISYFIITKDNFVPKNKIGEDEIKSYYEAHKEL 246

Query: 263 -KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK---KFIQLAEEQGKS 306
            K F    ++  Q +  N + A E F    +     K+ +L ++ GK+
Sbjct: 247 FKDFDDNTKSTIQKIIQN-RHALEQFNEYTQNVDSIKYAKLEKQLGKA 293


>gi|15611978|ref|NP_223629.1| hypothetical protein jhp0911 [Helicobacter pylori J99]
 gi|4155485|gb|AAD06486.1| putative [Helicobacter pylori J99]
          Length = 487

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 138/309 (44%), Gaps = 28/309 (9%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L  F  D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNFALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIRKTNVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E ++ +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYENHRKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV---FPNQKEADEAF 287
            FD   ++  ++    EL+  Y KNK  Y   E      ++V++ V      QK  ++A 
Sbjct: 233 YFDASLEKTDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLNMQKANEKAL 288

Query: 288 QS---LKKG 293
           +S   LKKG
Sbjct: 289 RSYIALKKG 297


>gi|317014385|gb|ADU81821.1| hypothetical protein HPGAM_05060 [Helicobacter pylori Gambia94/24]
          Length = 487

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 121/273 (44%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L  F  D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNFALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   K+L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLIIQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E ++ +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDVKISLNEEE--MKKYYENHRKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKTDLK----ELEEYYHKNKVSYLDKE 261


>gi|319790371|ref|YP_004152004.1| SurA domain protein [Thermovibrio ammonificans HB-1]
 gi|317114873|gb|ADU97363.1| SurA domain protein [Thermovibrio ammonificans HB-1]
          Length = 436

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 160/390 (41%), Gaps = 77/390 (19%)

Query: 1   MLEIIRKASRTWVAKIFLVVL-FVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  IRK  R +   +++V   FV   FL+WG     FS    S V +V  Q +  + F 
Sbjct: 1   MLSKIRKNLRAFSIPLWIVAASFVGTIFLVWGRGS--FSGPSGSQVATVNGQPITLAEFN 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             +K     + +K+G   N +  +   + +  L  LV  A L +  ++ GL+     V  
Sbjct: 59  REYKTVEDELRRKLGDNFN-KLVKPNDIKRIALQRLVQRALLIELAKEEGLKVSDWAVAK 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P+F  ++ KFS  ++ + L  +G+  + + +   K L    V+            
Sbjct: 118 AIEEMPIFQ-ENGKFSVKLYKAFLRAQGLTPQAFEETVRKDLLVQKVL------------ 164

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                             V+N  H P++   + A LT   E YK ++     ++I Y +F
Sbjct: 165 -----------------TVVN--HAPSV---TQAELT---ELYKKSFGQ---RKIGYKVF 196

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-----AFQSLKK 292
              +   K+  S +E++  Y+K+KE++                KEA E     +F++  +
Sbjct: 197 TADQFNPKV--SEEEVEQFYKKHKEQF---------------TKEAGEEVYLLSFENTPQ 239

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           GK+  + A E  K      L +F+ +  P+         LAK+    P I  S    +  
Sbjct: 240 GKERAKEAYELAKKGELEKLKAFNPKPAPE--------KLAKELQKRPFIFRSENGRLIL 291

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASE 382
              +K S TV  ++VK  I  Q++  KA E
Sbjct: 292 AFKLKKSETVPLEKVKAQIEEQLKEEKALE 321


>gi|313679080|ref|YP_004056819.1| ppic-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
           profundus DSM 14977]
 gi|313151795|gb|ADR35646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
           profundus DSM 14977]
          Length = 621

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 13/140 (9%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           + E  KK++++++E +  YE +K +Y + +     Q+V  +Q  AD+ ++ L  G  F +
Sbjct: 150 IDELRKKVKLTDEEARFYYELHKGEYAAEDRVKARQIVLDDQATADQVYKQLIGGADFAE 209

Query: 299 LAE-------EQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           LA        EQG ++         G  ++   P   +AD++F L K G  T VI     
Sbjct: 210 LARQYSKVGAEQGGAVGAEPGSSEPGPVTRLVFP-TPVADAVFQL-KSGGMTEVIETGGR 267

Query: 348 YVIAHVSNIKPSFTVSFQEV 367
           Y I  V    P   V ++EV
Sbjct: 268 YYIVKVEEFLPGGDVPYEEV 287



 Score = 37.4 bits (85), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 40/70 (57%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
           K K + ++ DE++A YE+N  ++  P   TV+ + F +++ AD+  + L  G    +LA+
Sbjct: 412 KTKDVTVTPDEVRAYYEENPARFSIPASATVKTVSFKDKETADKFREKLIAGDPLEELAK 471

Query: 302 EQGKSLSDIS 311
             G  +SD+ 
Sbjct: 472 GLGGQVSDLG 481


>gi|332798476|ref|YP_004459975.1| Foldase protein prsA [Tepidanaerobacter sp. Re1]
 gi|332696211|gb|AEE90668.1| Foldase protein prsA [Tepidanaerobacter sp. Re1]
          Length = 300

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 19/172 (11%)

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEK-EKKIEISNDELQAEYEKNKEKYFSPEIR 270
            LTQ+ E Y   Y   E K    +  +V +  E  I+I   E+++ +++NK  + +PE  
Sbjct: 110 ALTQFLEMY--GYSLDEIKENIKMNLNVKKLLEPTIKIEESEIKSYFDENKASFDTPEQV 167

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIP 321
               ++   +++A E  Q L+ G+ F +LA+         +QG  L   S G  + E+  
Sbjct: 168 KASHILVDTEEKAKEVKQKLQDGEDFAELAKTYSTDTSNNQQGGELGYFSKGQMTPEF-- 225

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
                ++ FSL K G+ +  +   FGY I  V + K +   +++E K ++ N
Sbjct: 226 ----EEAAFSL-KAGEISDPVKTEFGYHIIKVEDKKEAKEATYEESKDEVKN 272


>gi|317180180|dbj|BAJ57966.1| hypothetical protein HPF32_0384 [Helicobacter pylori F32]
          Length = 487

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SGSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPNFKELTEDQIKAIHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   K+L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISTLFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261


>gi|115375700|ref|ZP_01462954.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
 gi|115367263|gb|EAU66244.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
          Length = 204

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 9/132 (6%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           ++ ++ +EL+A Y  ++ ++  PE     QLV     EA      LK GKKF  LA    
Sbjct: 27  RVAVTEEELRAAYTAHEAEFQEPEQVHAAQLVVKGLDEARRVQAQLKAGKKFADLARRY- 85

Query: 305 KSLSDIS-----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            SLS  +     LG F +  +P V   + +F+L + G  + V+   +GY +  V   KP+
Sbjct: 86  -SLSADAKVGGDLGFFPRGQMPPV-FDEVVFNL-RPGQVSDVVSTEYGYHLFRVLEFKPA 142

Query: 360 FTVSFQEVKKDI 371
               F EV+  +
Sbjct: 143 RKRDFVEVRAKV 154


>gi|298486267|ref|ZP_07004330.1| Peptidyl-prolyl cis-trans isomerase ppiD [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298159274|gb|EFI00332.1| Peptidyl-prolyl cis-trans isomerase ppiD [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 627

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 87/421 (20%), Positives = 171/421 (40%), Gaps = 46/421 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDIS----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDN-----------LVSGATLDQF-IED 105
            Q + M  +++   +  +  +      LD+K+L             L+ GAT  +F   D
Sbjct: 57  SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSD 116

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
             L+        ++ ++P F   D KFS D F   + + G +  ++     +ML +  ++
Sbjct: 117 AALDQ-------QLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLI 164

Query: 166 GMFVGGMRPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           G    G+  S  + D Q   F   E ++ D+  L           ++  +   ++++   
Sbjct: 165 GQVRAGVAGSAFVTDAQVDAFARLEKQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKE 224

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           + +PE   + YI         K+++ +++LQA Y+K      S + R    L+  N K  
Sbjct: 225 FMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLN 283

Query: 284 DEAF--------QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSL 332
           DE          Q L KG+ F  LA+E  +     S G    ++ + + D +  D++++L
Sbjct: 284 DEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYAL 343

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            K     PV    FG+ +  +  ++     +F  +K  +   ++     +K  E  K+LE
Sbjct: 344 NKDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLE 402

Query: 393 E 393
           +
Sbjct: 403 D 403


>gi|302389639|ref|YP_003825460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermosediminibacter
           oceani DSM 16646]
 gi|302200267|gb|ADL07837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermosediminibacter
           oceani DSM 16646]
          Length = 297

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 20/155 (12%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA-- 300
           E KI I+ +E+++ +E+NK+ +   +      ++  N+++A+E    LK G+ F +LA  
Sbjct: 134 EPKISITEEEIKSYFEENKDNFAREKQVRARHILVENEEKANEVIAKLKSGEDFAELAKQ 193

Query: 301 -------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
                  +E+G  L     G   KE+       ++ FSL K G+ +  +   +GY I  V
Sbjct: 194 YSTDTATKEKGGDLGFFGRGDMVKEF------EEAAFSL-KVGEISSPVKTQYGYHIIKV 246

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
             IK +   +++E K  I + +     ++KV+++Y
Sbjct: 247 EEIKEAQEANYEESKDKIKDIL----LNQKVQQEY 277


>gi|313888122|ref|ZP_07821796.1| putative foldase protein PrsA [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845812|gb|EFR33199.1| putative foldase protein PrsA [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 362

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 15/158 (9%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
             EK K++E + +E++ +YE NK+ Y+  +      ++  + KEA+   + + KG+ F +
Sbjct: 152 TQEKLKELEPTEEEVKKQYEDNKDSYYKAK---ASHILVDDLKEANVLRKKILKGEDFAK 208

Query: 299 LAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+E     G + +  SLG F+   +  V   D   +  K GD +  I   FGY I  + 
Sbjct: 209 LAKENSKDTGSAQNGGSLGEFTSGQM--VEAFDKEIAKMKVGDISEPITTQFGYHIIKLE 266

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE---KVKEDYK 389
           + KP   + F  VK  I  Q++  K  E   KVK+D K
Sbjct: 267 DKKP---LEFDAVKDQIKAQLQQEKFKEYIDKVKKDAK 301


>gi|308184755|ref|YP_003928888.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
           [Helicobacter pylori SJM180]
 gi|308060675|gb|ADO02571.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
           [Helicobacter pylori SJM180]
          Length = 487

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   K+L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKTDLK----ELEEYYHKNKVSYLDKE 261


>gi|254779571|ref|YP_003057677.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
           [Helicobacter pylori B38]
 gi|254001483|emb|CAX29488.1| Putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
           [Helicobacter pylori B38]
          Length = 487

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   K+L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261


>gi|56707753|ref|YP_169649.1| hypothetical protein FTT_0628 [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670224|ref|YP_666781.1| hypothetical protein FTF0628 [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456823|ref|ZP_03665296.1| hypothetical protein FtultM_03409 [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370257|ref|ZP_04986262.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874566|ref|ZP_05247276.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604245|emb|CAG45261.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320557|emb|CAL08644.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568500|gb|EDN34154.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840565|gb|EET19001.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158924|gb|ADA78315.1| hypothetical protein NE061598_03585 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 476

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 131/309 (42%), Gaps = 35/309 (11%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           K   TW+  I +  +FV   I G++    ++   + V  VG  ++    F   + Q    
Sbjct: 10  KGPFTWIVVISISFIFV---ISGMTFFFTNIGSRAYVAKVGDNEISSQQF-QQYAQSATT 65

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
             QK   +       S  +D+ ++  L      D  +  + L++        I  +P+F 
Sbjct: 66  EEQKRAIL-------SQMIDQYLI--LADAQRHDIVVSKLALQS-------AIFTNPMFF 109

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF- 185
            KD KFS +     +A  G      +D   ++L++     +    +  +++++D   +  
Sbjct: 110 DKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDTSIVIDYDTKLL 164

Query: 186 ---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
              Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +      
Sbjct: 165 NSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKDNF 224

Query: 243 EKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFI 297
             K +IS DE++A Y+ +KE  K F    ++  Q +  N + A E F    +     K+ 
Sbjct: 225 VLKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIKYT 283

Query: 298 QLAEEQGKS 306
           +L ++ GK+
Sbjct: 284 KLEKQFGKA 292


>gi|91202358|emb|CAJ75418.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 318

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 6/142 (4%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           K I +S ++LQ  Y     K    E    +Q+V   ++EA+EA + L+ G    ++A+ Q
Sbjct: 164 KTISVSEEDLQEAY-----KSIYGEKIEAQQIVLKTKREAEEALEKLRLGADITKMAKAQ 218

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               +  S       + P+  +  S+  L K G+ + +I+ ++GY I  ++  K      
Sbjct: 219 SIDRASASRDGKMLPFSPEDDIGKSVAHL-KPGELSGIINTNYGYHIVKITGRKTGSDKK 277

Query: 364 FQEVKKDIANQMRITKASEKVK 385
           F  VKK++   +R  K  E+++
Sbjct: 278 FDTVKKELEELVREKKYRERLR 299


>gi|242308919|ref|ZP_04808074.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239524583|gb|EEQ64449.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 489

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/389 (20%), Positives = 158/389 (40%), Gaps = 39/389 (10%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-GRQKVPFSSFINSWKQELGMISQK 70
           W++ I  +     F+ WG     +S S +S  V+V G  KV        + +   + +Q 
Sbjct: 17  WISTIAFI--GAGFVGWGS----YSFSSTSNAVAVVGDIKVSIDKMQREYARLYNIYNQL 70

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
           +G  ++ E+A+ +G++++ ++NL+  A +  +  D+GL      +  EI     F  K  
Sbjct: 71  VGGTLDDEQAKKMGIEEQAINNLIVKALMLNYAYDLGLRVSKEEIIQEITSIEGFQNK-G 129

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
           KF   ++   L    +  K++ +   + L    +  +    + P  L ++     Y    
Sbjct: 130 KFDEQIYKQTLKDNQLKPKDFEEGIEEGLLLQKLDALLNIPLTP--LEIEALGAAYSMED 187

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
            V   V+N + +  +  P    + +++E  KD Y+      IS I   +      I +  
Sbjct: 188 LVHIEVINKKDI--VFTPKEEEIKKYWENNKDIYQTQRGYEISSIFIPLD----SIAVEE 241

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-------KKFIQLAEEQ 303
           + L+  Y+  K ++     +     + P  +  D+  +  +         K++I L + +
Sbjct: 242 NALEQYYKDFKNQFLDSNGQ-----IIPFAQAKDKVIEKFRDSQAQKEALKEYISLRKGE 296

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH----GSFGYVIAHVSNIKPS 359
            +   D ++   S EY  D     ++ S AK+ +    I     G  GY+ A V  I PS
Sbjct: 297 NQEAKDSTIYEGSDEYGADFI---NLLSQAKEQETLKPIRVNNKGKEGYITAKVVKIIPS 353

Query: 360 ----FTVSFQEVKKDIANQMRITKASEKV 384
               + V+    K+D  N  +I    EK 
Sbjct: 354 QPQTYEVAKANAKEDYVNAEQIRLLEEKA 382


>gi|207091647|ref|ZP_03239434.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 487

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   K+L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261


>gi|319957104|ref|YP_004168367.1| ppic-type peptidyl-prolyl cis-trans isomerase [Nitratifractor
           salsuginis DSM 16511]
 gi|319419508|gb|ADV46618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitratifractor
           salsuginis DSM 16511]
          Length = 287

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 119/245 (48%), Gaps = 21/245 (8%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP--SNAVLTQ 215
           +LS +DV+ + V G + +   ++   R    N+ + Y +L+ +    + D      +L +
Sbjct: 18  LLSASDVIAV-VNGHKITKAEVNTFLRQSMPNQPITYDMLDPKTKKKVLDGLIETEILAE 76

Query: 216 WFEKYKDNYRAPEYKRI-----SYILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPE 268
             +K     + PE++++       ++ +   K+  KKI +S  E +  Y+K+++K+  P 
Sbjct: 77  AAQKA-GVEKNPEFQQMLDMAKKKLMINAWAKDEFKKIIVSESEAKEFYQKHQDKFTRPA 135

Query: 269 IRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQLAEEQGKSLSDIS---LGSFSKEY 319
                 ++  ++K+A E    LK  KG    K+FI+LA+++    +      LG F K+ 
Sbjct: 136 QVHARHILVKSEKKAQEIIDQLKGLKGEALQKRFIELAKKESTGPTGPKGGDLGYFGKDQ 195

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           +  +  + + F+L K    T  +   FG+ + +V + KP+ T+ F  VK  +   ++  +
Sbjct: 196 MV-LPFSKAAFALNKGEITTKPVKTQFGWHVIYVEDKKPAQTIPFDAVKDRVIAALKQQR 254

Query: 380 ASEKV 384
            +EK+
Sbjct: 255 FAEKM 259


>gi|320325365|gb|EFW81432.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 627

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 87/421 (20%), Positives = 171/421 (40%), Gaps = 46/421 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDIS----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDN-----------LVSGATLDQF-IED 105
            Q + M  +++   +  +  +      LD+K+L             L+ GAT  +F   D
Sbjct: 57  SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSD 116

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
             L+        ++ ++P F   D KFS D F   + + G +  ++     +ML +  ++
Sbjct: 117 AALDQ-------QLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLI 164

Query: 166 GMFVGGMRPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           G    G+  S  + D Q   F   E ++ D+  L           ++  +   ++++   
Sbjct: 165 GQVRAGVAGSAFVTDAQVDAFARLEKQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKE 224

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           + +PE   + YI         K+++ +++LQA Y+K      S + R    L+  N K  
Sbjct: 225 FMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLN 283

Query: 284 DEAF--------QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSL 332
           DE          Q L KG+ F  LA+E  +     S G    ++ + + D +  D++++L
Sbjct: 284 DEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYAL 343

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            K     PV    FG+ +  +  ++     +F  +K  +   ++     +K  E  K+LE
Sbjct: 344 NKDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLE 402

Query: 393 E 393
           +
Sbjct: 403 D 403


>gi|187776514|ref|ZP_02992987.1| hypothetical protein CLOSPO_00005 [Clostridium sporogenes ATCC
           15579]
 gi|187775173|gb|EDU38975.1| hypothetical protein CLOSPO_00005 [Clostridium sporogenes ATCC
           15579]
          Length = 247

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 7/133 (5%)

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI---SLGS 314
           E+NKE++ + E+ T   ++  ++ EA+  +  +K G  F + AE+  K  S     SLG+
Sbjct: 104 EENKEEFRTQELITARHILVDSEDEANSIYGKIKNGLDFSEAAEKYSKCPSKAQGGSLGT 163

Query: 315 FSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           F+K + +P+   A  +F  A+    T  +   FGY +  V NI+ S    F EVK  I N
Sbjct: 164 FTKGQMVPEFEKA--VFE-AEVDKVTEAVKTQFGYHLIIVDNIRESMIKPFDEVKAMINN 220

Query: 374 QMRITKASEKVKE 386
           ++   K +++  E
Sbjct: 221 KLLQEKQNQQYNE 233


>gi|54113793|gb|AAV29530.1| NT02FT0767 [synthetic construct]
          Length = 476

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 131/309 (42%), Gaps = 35/309 (11%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           K   TW+  I +  +FV   I G++    ++   + V  VG  ++    F   + Q    
Sbjct: 10  KGPFTWIVVISISFIFV---ISGMTFFFTNIGSRAYVAKVGDNEISSQQF-QQYAQSATT 65

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
             QK   +       S  +D+ ++  L      D  +  + L++        I  +P+F 
Sbjct: 66  EEQKRAIL-------SQMIDQYLI--LADAQRHDIVVSKLALQS-------AIFTNPMFF 109

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF- 185
            KD KFS +     +A  G      +D   ++L++     +    +  +++++D   +  
Sbjct: 110 DKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDTSIVIDYDTKLL 164

Query: 186 ---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
              Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +      
Sbjct: 165 NSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKDNF 224

Query: 243 EKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFI 297
             K +IS DE++A Y+ +KE  K F    ++  Q +  N + A E F    +     K+ 
Sbjct: 225 VLKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIKYT 283

Query: 298 QLAEEQGKS 306
           +L ++ GK+
Sbjct: 284 KLEKQFGKA 292


>gi|257483811|ref|ZP_05637852.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|320327650|gb|EFW83658.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330985643|gb|EGH83746.1| periplasmic folding chaperone [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331012683|gb|EGH92739.1| periplasmic folding chaperone [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 627

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 87/421 (20%), Positives = 171/421 (40%), Gaps = 46/421 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDIS----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDN-----------LVSGATLDQF-IED 105
            Q + M  +++   +  +  +      LD+K+L             L+ GAT  +F   D
Sbjct: 57  SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSD 116

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
             L+        ++ ++P F   D KFS D F   + + G +  ++     +ML +  ++
Sbjct: 117 AALDQ-------QLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLI 164

Query: 166 GMFVGGMRPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           G    G+  S  + D Q   F   E ++ D+  L           ++  +   ++++   
Sbjct: 165 GQVRAGVAGSAFVTDAQVDAFARLEKQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKE 224

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           + +PE   + YI         K+++ +++LQA Y+K      S + R    L+  N K  
Sbjct: 225 FMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLN 283

Query: 284 DEAF--------QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSL 332
           DE          Q L KG+ F  LA+E  +     S G    ++ + + D +  D++++L
Sbjct: 284 DEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYAL 343

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            K     PV    FG+ +  +  ++     +F  +K  +   ++     +K  E  K+LE
Sbjct: 344 NKDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLE 402

Query: 393 E 393
           +
Sbjct: 403 D 403


>gi|310825131|ref|YP_003957489.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
 gi|309398203|gb|ADO75662.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
          Length = 330

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 9/132 (6%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           ++ ++ +EL+A Y  ++ ++  PE     QLV     EA      LK GKKF  LA  + 
Sbjct: 153 RVAVTEEELRAAYTAHEAEFQEPEQVHAAQLVVKGLDEARRVQAQLKAGKKFADLA--RR 210

Query: 305 KSLSDIS-----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            SLS  +     LG F +  +P V   + +F+L + G  + V+   +GY +  V   KP+
Sbjct: 211 YSLSADAKVGGDLGFFPRGQMPPV-FDEVVFNL-RPGQVSDVVSTEYGYHLFRVLEFKPA 268

Query: 360 FTVSFQEVKKDI 371
               F EV+  +
Sbjct: 269 RKRDFVEVRAKV 280


>gi|254374458|ref|ZP_04989940.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151572178|gb|EDN37832.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 477

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 133/311 (42%), Gaps = 38/311 (12%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQEL 64
           K   TW+  I +  +FV   I G++   F+  GSS   V  VG  ++    F   + Q  
Sbjct: 10  KGPFTWIVVISISFIFV---ISGMT-FFFTNIGSSRAYVAKVGDNEISSQQF-QQYAQSA 64

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
               QK   +       S  +D+ ++  LV     D  +  + L++        I  +P+
Sbjct: 65  TTEEQKRAIL-------SQMIDQYLI--LVDAQRHDIVVSKLALQS-------AIFTNPM 108

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F  KD KFS +     +A  G      +D   ++L++     +    +  ++++ D   +
Sbjct: 109 FFDKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDTK 163

Query: 185 F----YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +    
Sbjct: 164 LLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKD 223

Query: 241 EKEKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KK 295
               K +IS DE++A Y+ +KE  K F    ++  Q +  N + A E F    +     K
Sbjct: 224 NFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIK 282

Query: 296 FIQLAEEQGKS 306
           + +L ++ GK+
Sbjct: 283 YTKLEKQFGKA 293


>gi|223039645|ref|ZP_03609931.1| foldase protein PrsA [Campylobacter rectus RM3267]
 gi|222879028|gb|EEF14123.1| foldase protein PrsA [Campylobacter rectus RM3267]
          Length = 270

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 13/145 (8%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQL 299
           +++S +E+   Y KNK ++  P     + ++   +K+A++   +LK  KG    KKF +L
Sbjct: 107 VKVSENEISDFYNKNKAEFAVPAQVKAKHILVAAEKDANDVIAALKGLKGDALVKKFEEL 166

Query: 300 AE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVS 354
           A+    +QG + +   LG F +  +     AD+ F+L KKG+ T   +  +FGY +    
Sbjct: 167 AKAKSTDQGSAENGGELGWFGQSQMVK-PFADAAFAL-KKGEITAKPVKSNFGYHVILKE 224

Query: 355 NIKPSFTVSFQEVKKDIANQMRITK 379
           + K + TV   EVK  I   +++ K
Sbjct: 225 DSKAAGTVGLNEVKPQIEGNLKMEK 249


>gi|325479565|gb|EGC82661.1| putative peptidylprolyl isomerase PrsA2 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 354

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 71/131 (54%), Gaps = 9/131 (6%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           +++DE++  +E NK+++   +      ++  +++ A++    L  G+ F  LA+E  K  
Sbjct: 166 VTDDEIKKYFEDNKDEFAKVD---ASHILVEDEQTANDIKARLDNGEDFASLAKEYSKDT 222

Query: 308 SDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           +      +LG+F+K  +      D+ FS+ K+G+ +  +   FGY I  V++IK SF  S
Sbjct: 223 ASAQNGGALGAFAKGQMV-KEFEDAAFSM-KEGEISAPVKSQFGYHIIKVNSIKDSFEDS 280

Query: 364 FQEVKKDIANQ 374
            +E+ K I +Q
Sbjct: 281 KEEITKKIKDQ 291


>gi|254457621|ref|ZP_05071049.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Campylobacterales
           bacterium GD 1]
 gi|207086413|gb|EDZ63697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Campylobacterales
           bacterium GD 1]
          Length = 275

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 78/145 (53%), Gaps = 13/145 (8%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGK----KFIQ 298
           K+E+S+ EL+  Y+KNK+++   E      ++   ++EA    +SLK  KG+    KFI+
Sbjct: 115 KVEVSDKELKNYYDKNKDEFNEKETVHARHILVKTEEEAKNIVKSLKSLKGEALKAKFIE 174

Query: 299 LAEEQGKSLSDIS---LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            A+ +    S      LG F++ + +P+ +  D +F + K G  +  +   FGY + ++ 
Sbjct: 175 EAKAKSTGPSGPKGGDLGYFAQGQMVPEFN--DKVFGM-KVGTVSEPVKTQFGYHVIYLE 231

Query: 355 NIKPSFTVSFQEVKKDIANQMRITK 379
           + K   T++F EVK  I  ++++ K
Sbjct: 232 DKKAKKTLAFTEVKSFIEQRLKMEK 256


>gi|261839760|gb|ACX99525.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori 52]
          Length = 487

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SGSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261


>gi|108563383|ref|YP_627699.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori HPAG1]
 gi|107837156|gb|ABF85025.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori HPAG1]
          Length = 487

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 137/309 (44%), Gaps = 28/309 (9%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYNFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV---FPNQKEADEAF 287
            FD   ++  ++    EL+  Y KNK  Y   E      ++V++ V      QK  ++A 
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 288 QS---LKKG 293
           +S   LKKG
Sbjct: 289 RSYIALKKG 297


>gi|308063803|gb|ADO05690.1| conserved hypothetical secreted protein [Helicobacter pylori
           Sat464]
          Length = 487

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKE 261


>gi|315635801|ref|ZP_07891063.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22]
 gi|315479780|gb|EFU70451.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22]
          Length = 269

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 22/156 (14%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG----KKFIQLA 300
           KI+++  + +  YEKNKEK+  PE      ++   + EA +    L K     +KF +L+
Sbjct: 108 KIKVTEADKKDFYEKNKEKFVEPETFEASHILVKTEAEAKDIISQLDKASNKVEKFKELS 167

Query: 301 EEQGKSLSDIS------LGSFS-KEYIPDVSLADSIFSLAKKGDF--TPVIHGSFGYVIA 351
           +   KSL   S      LG F+ ++ +P+     ++ +LA KG +  TPV    FGY + 
Sbjct: 168 K---KSLDTASAKNGGALGRFAVEQMVPE--FGSAVKALA-KGTYSKTPV-KTQFGYHVI 220

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKE 386
           ++ +  PS T ++ EV+K+I NQ+ I  A ++K+KE
Sbjct: 221 YLKDKFPSKTFAYTEVEKNI-NQVLIGNALNKKIKE 255


>gi|308062290|gb|ADO04178.1| conserved hypothetical secreted protein [Helicobacter pylori Cuz20]
          Length = 487

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKE 261


>gi|157736637|ref|YP_001489320.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri RM4018]
 gi|157698491|gb|ABV66651.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri RM4018]
          Length = 269

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 22/156 (14%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG----KKFIQLA 300
           KI+++  + +  YEKNKEK+  PE      ++   + EA +    L K     +KF +L+
Sbjct: 108 KIKVTEADKKDFYEKNKEKFVEPETFEASHILVKTEAEAKDIISQLDKAPNKVEKFKELS 167

Query: 301 EEQGKSLSDIS------LGSFS-KEYIPDVSLADSIFSLAKKGDF--TPVIHGSFGYVIA 351
           +   KSL   S      LG F+ ++ +P+     ++ +LA KG +  TPV    FGY + 
Sbjct: 168 K---KSLDTASAKNGGALGRFAVEQMVPE--FGSAVKALA-KGTYSKTPV-KTQFGYHVI 220

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKE 386
           ++ +  PS T ++ EV+K+I NQ+ I  A ++K+KE
Sbjct: 221 YLKDKFPSKTFAYTEVEKNI-NQVLIGNALNKKIKE 255


>gi|187931475|ref|YP_001891459.1| hypothetical protein FTM_0703 [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712384|gb|ACD30681.1| conserved hypothetical protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 477

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 101/228 (44%), Gaps = 24/228 (10%)

Query: 97  ATLDQFIEDIGLEADHGR---------VWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           A L Q I+   + AD  R         +   I  +P+F  KD KFS +     +A  G  
Sbjct: 72  AILSQMIDQYLILADAQRHDIVVSKLALQSAIFTNPMFFDKDGKFSAEKLKQVVAYLG-- 129

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF----YFENRSVDYIVLNNRHVP 203
               +D   ++L++     +    +  +++++D   +     Y  N+ +DY+ ++     
Sbjct: 130 ---GMDKLEQILAQNIQATIIPKTIVDTSIVIDYDTKLLNSIYSVNKYIDYLKVSPTDFK 186

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE- 262
           +   PS   L  +++ +K+ Y  P  K ISY +        K +IS DE++A Y+ +KE 
Sbjct: 187 SQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKDNFVLKNKISEDEIKAYYQAHKEL 246

Query: 263 -KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKS 306
            K F    ++  Q +  N + A E F    +     K+ +L ++ GK+
Sbjct: 247 FKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIKYTKLEKQFGKA 293


>gi|255321569|ref|ZP_05362727.1| trimethylamiNe-N-oxide reductase 1 [Campylobacter showae RM3277]
 gi|255301425|gb|EET80684.1| trimethylamiNe-N-oxide reductase 1 [Campylobacter showae RM3277]
          Length = 270

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 15/146 (10%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQL 299
           I++S  E+   Y KNK ++  P     + ++   +K+A++   +LK  KG    KKF +L
Sbjct: 107 IKVSEGEISDFYNKNKAEFAVPAQVRAKHILVATEKDANDIIAALKGLKGDELVKKFEEL 166

Query: 300 AE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHV 353
           A+    +QG + +   LG F +  +     AD+ F+L KKG+ T  PV   +FGY +   
Sbjct: 167 AKSKSTDQGSAANGGELGWFGQSQMVK-PFADAAFAL-KKGEVTQKPV-KSNFGYHVILK 223

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITK 379
            + K + TV   EVK  I   +++ K
Sbjct: 224 EDSKAAGTVGLNEVKPQIEGNIKMEK 249


>gi|237752705|ref|ZP_04583185.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376194|gb|EEO26285.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 485

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 67/368 (18%), Positives = 148/368 (40%), Gaps = 33/368 (8%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-GRQKVPFSSFINSWKQELGMISQK 70
           W++ I    L   F+ WG     +S S +S   +V G +++        + +   + +Q 
Sbjct: 17  WISAI--AFLGAGFVGWGA----YSFSNTSNAAAVVGDRQITIDRLQREYARLYNVYNQL 70

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
               +++E+A+ +G++++ L+ L+S A +  +  D+GL      +   +    +F   + 
Sbjct: 71  FNGNLDNEQAKKLGIEEQALNTLISRALMLNYAHDVGLRISQEEIIQTLTAMDIFQN-NG 129

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
           KF   ++   LA   +  K++ +   + +    +  +    + P  L +       F   
Sbjct: 130 KFDETIYKRLLADNQMRPKDFEEELGEGILLQKLDALLEIPLTP--LEIQTISEAVFSED 187

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
            +   VLN+  +    +P+   + +++E+ KD Y+        Y +  V  K   I + N
Sbjct: 188 HLKIQVLNDSEIT--FNPTEEEIKKYWEENKDIYQTQR----GYEVLKVSVKSDSIPVDN 241

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-------KKFIQLAEEQ 303
           + L+  YE  K ++     +     + P  K  D+     K         K++I L + +
Sbjct: 242 ETLKKHYEDFKNQFLDENGQ-----LLPFDKAKDKVIAHYKSSQAEKESLKEYISLRKGE 296

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTV 362
            K    + +      Y  D    + +    ++    P+ + G F  +   +  I PS   
Sbjct: 297 NKKAESLVIYEGDSNY--DTEFLNLLSQAKEQETLKPIKVKGEF--ITIKIQKIIPSEPK 352

Query: 363 SFQEVKKD 370
           S++  K+D
Sbjct: 353 SYEAAKQD 360


>gi|315586916|gb|ADU41297.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 35A]
          Length = 517

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 31  MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SGSAAKVGQIKISQEELAQE 89

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 90  YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 149

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 150 EIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 205

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 206 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 262

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 263 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 291


>gi|317050625|ref|YP_004111741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum
           indicum S5]
 gi|316945709|gb|ADU65185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum
           indicum S5]
          Length = 280

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 13/164 (7%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           + + +S  +L+  YE+NK ++ +        ++  ++++A E  +  + G+ F QLA E 
Sbjct: 116 RNVSVSEQDLKEFYERNKARFVTQATVAASHILLEDEQKAREVLRRARAGENFGQLAREH 175

Query: 304 ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
               G +  +  +G F +         D+ F+ A+ G    ++   FGY I  V    PS
Sbjct: 176 SLDPGSARQEGFIGEFYRGQGLVKEFEDAAFA-AEVGVHPELVRTEFGYHIIKVHEKNPS 234

Query: 360 FTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEFLALGTSM 401
            TVS  E +       R+T+  A EK  +   RL + L L  S+
Sbjct: 235 RTVSLDEARD------RVTEIIAEEKQNQALMRLIQELELRYSV 272


>gi|326330421|ref|ZP_08196729.1| LigA [Nocardioidaceae bacterium Broad-1]
 gi|325951696|gb|EGD43728.1| LigA [Nocardioidaceae bacterium Broad-1]
          Length = 345

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---------EEQGKSL 307
           YE + +++ +PE R +  +V    K+A    Q  +KG+ F  LA          +QG +L
Sbjct: 181 YEAHPDRFMTPEGRELRNIVVRTDKDAQAVVQRARKGEDFAALARANSLDDATRDQGGAL 240

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
             +   S + +Y      A + F       F PV    FG+ +  V  I P    +F +V
Sbjct: 241 GVVPASSLAGDY------AKAAFGARSGAVFGPV-RTQFGWNVGQVVRIVPGKEPTFDQV 293

Query: 368 KKDIANQMRITKASE 382
           +    + +R  +A E
Sbjct: 294 EDQALDVVRSERALE 308


>gi|313888943|ref|ZP_07822603.1| putative peptidylprolyl isomerase PrsA1 [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845116|gb|EFR32517.1| putative peptidylprolyl isomerase PrsA1 [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 249

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 15/144 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA------ 300
           E+ +++++  YE+NK+ +   E      ++   + +A E ++ +K G  F +LA      
Sbjct: 94  EVKDEDIKKFYEENKDAFKQGESADASHILVEEEDKAREIYEKIKNGGDFEELAKEYSTC 153

Query: 301 --EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
             +E+G +L   + G   KE+       D++F   + G  T  +   FGY I  ++    
Sbjct: 154 PSKEKGGNLGTFTKGQMVKEF------EDAVFE-NEVGTITEPVKTQFGYHIIKINQKND 206

Query: 359 SFTVSFQEVKKDIANQMRITKASE 382
           +  +SF EVK  I  Q+R  K  E
Sbjct: 207 ARELSFDEVKDRIVEQVRRQKEQE 230


>gi|225874673|ref|YP_002756132.1| peptidylprolyl cis-trans isomerase SurA, putative [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793602|gb|ACO33692.1| peptidylprolyl cis-trans isomerase SurA, putative [Acidobacterium
           capsulatum ATCC 51196]
          Length = 588

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 27/148 (18%)

Query: 246 IEISNDELQAEYEKNKEKYFSP-EIRTVEQLV-FPN----------QKEADEAFQSLKKG 293
           I IS DE+Q  Y+++K+++  P E+R  E L+  PN          +K+AD     LK G
Sbjct: 186 IRISPDEIQKYYDQHKKEFDRPEEVRLSEILIPTPNPDDAAQVAEAKKKADGIEAQLKAG 245

Query: 294 KKFIQLAEE--------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
             F +LA+         QG  L D   G  + E      L ++ F L KKG FT  I   
Sbjct: 246 GDFAKLAKSDSTGPTAPQGGDLGDFQKGQLAPE------LENATFPL-KKGQFTEPIQTK 298

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
            G++I  V++ + +      +V+  I N
Sbjct: 299 QGWIILEVTHHQDAGLAPMNQVETQIEN 326


>gi|210135166|ref|YP_002301605.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori P12]
 gi|210133134|gb|ACJ08125.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori P12]
          Length = 487

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261


>gi|289423524|ref|ZP_06425325.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
 gi|289156026|gb|EFD04690.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
          Length = 252

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 8/142 (5%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQG 304
           +E+S++E    YE+NK ++ SPE+ + + ++   + +A E    + KK   F   A E  
Sbjct: 93  VEVSDEEKLNYYEENKAQFVSPEMVSAKHILVDEEDQAKEIKTKIDKKEMSFEDAAVEYS 152

Query: 305 KSLSDI---SLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           K  S++    LG F K + +P+    ++ F+L + G  +  +   FGY I  V + K   
Sbjct: 153 KCPSNMKGGDLGEFGKGQMVPE--FEEAAFAL-EVGKVSEPVKSQFGYHIIKVESHKEEG 209

Query: 361 TVSFQEVKKDIANQMRITKASE 382
            + F++VK ++AN +   K +E
Sbjct: 210 QLEFEDVKDEVANAVAYKKQNE 231


>gi|119476198|ref|ZP_01616550.1| peptidyl-prolyl cis-trans isomerase D, putative [marine gamma
           proteobacterium HTCC2143]
 gi|119450825|gb|EAW32059.1| peptidyl-prolyl cis-trans isomerase D, putative [marine gamma
           proteobacterium HTCC2143]
          Length = 640

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 134/329 (40%), Gaps = 25/329 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR+ S+  +AK  + ++ + F ++G+ D+L   +G + V +V   ++  +      
Sbjct: 15  MLQNIRENSQGLIAKFIIGLIILTFALFGI-DSLVGNNGPAVVAAVNGDEISLAELEQGV 73

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E   +   +G   +        L   +LD L+    L Q   D  +      +   I 
Sbjct: 74  SLERRRLLNYMGENADPSLLDDQRLRGPVLDRLIQQKLLLQAAADASVGVSDAALDQTII 133

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL-- 178
               F  +D KFS + + S L   G +       Y +++S+   V     G+  S+ +  
Sbjct: 134 AMEQFQ-EDGKFSPERYQSILRGSGYSTA----FYKQLMSQDLTVAQLNSGISGSDFVIS 188

Query: 179 --LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             L +  +   + RS  Y +L    V A    S   + Q +    D Y++ E   + Y+ 
Sbjct: 189 NELSEVSKIVGQQRSFRYFILPREKVAAQVIISEEEIQQHYNDNIDKYQSEEQVMLEYVE 248

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEAFQSLKKGK 294
               +  K +E   D+++ EY      + + E R V  ++    + ++A EA        
Sbjct: 249 VKTADFFKPVEA--DDIEREYALEIAAFEADEERRVSHILIEITDDRDASEAR------- 299

Query: 295 KFIQLAEEQGKSLS-DISLGSFSKEYIPD 322
              QLAE+  + L+ D    + ++E+  D
Sbjct: 300 ---QLAEQLAEKLTGDTDFATIAREFSED 325


>gi|261838345|gb|ACX98111.1| pedidyl-prolyl cis-trans isomerase D [Helicobacter pylori 51]
          Length = 487

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIKKTSVFQ-KDGIFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNKEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261


>gi|332678352|gb|AEE87481.1| Peptidyl-prolyl cis-trans isomerase ppiD [Francisella cf. novicida
           Fx1]
          Length = 477

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 132/310 (42%), Gaps = 38/310 (12%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQEL 64
           K   TW+  I +  +FV   I G++   F+  GSS   V  VG  ++    F   + Q  
Sbjct: 10  KGPFTWIVVISISFIFV---ISGMT-FFFTNIGSSRAYVAKVGDNEISSQQF-QQYAQSA 64

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
               QK   +       S  +D+ ++  LV     D  +  + L++        I  +P+
Sbjct: 65  TTEEQKRAIL-------SQMIDQYLI--LVDAQRHDIVVSKLALQS-------AIFTNPM 108

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F  KD KFS +     +A  G      +D   ++L++     +    +  ++++ D   +
Sbjct: 109 FFDKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDTK 163

Query: 185 F----YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +    
Sbjct: 164 LLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKD 223

Query: 241 EKEKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KK 295
               K +IS DE++A Y+ +KE  K F    ++  Q +  N + A E F    +     K
Sbjct: 224 NFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIK 282

Query: 296 FIQLAEEQGK 305
           + +L ++ GK
Sbjct: 283 YTKLEKQFGK 292


>gi|257066459|ref|YP_003152715.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus
           prevotii DSM 20548]
 gi|256798339|gb|ACV28994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus
           prevotii DSM 20548]
          Length = 359

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 69/132 (52%), Gaps = 9/132 (6%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           E++ DE++  +E NK+++   +      ++  +++ A E  + +  G+ F +LAEE    
Sbjct: 165 EVTEDEIKKYFEDNKDEFVKVD---ASHILVQDEETAKEVKEKIDNGEDFAKLAEEYSTD 221

Query: 307 LSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
            +      ++G+FSK  +      D+ FS+ K+G+ +  +   FGY I  V+ I  SF  
Sbjct: 222 TASAKNGGAVGAFSKGQMV-KEFEDAAFSM-KEGEVSDPVKSQFGYHIIKVNKITDSFED 279

Query: 363 SFQEVKKDIANQ 374
           S +E+ K I +Q
Sbjct: 280 SKEEITKKIKDQ 291


>gi|213420304|ref|ZP_03353370.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 205

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 90/198 (45%), Gaps = 11/198 (5%)

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
           +V   I  +P F   D KF ++ + + + + G+      D YT+ L         + G+ 
Sbjct: 11  QVKQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYTQALRNQLTTQQLINGVA 65

Query: 174 PSNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
            ++ +L    D+      + R V   V++   + A    ++  ++ ++++ K  +  PE 
Sbjct: 66  GTDFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQ 125

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
            R+SYI  D    +  +  S+ ++QA Y+++ +++  PE      +    + +A     +
Sbjct: 126 FRVSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDA 183

Query: 290 LKKGKKFIQLAEEQGKSL 307
           L KG+ F  LA+E+   +
Sbjct: 184 LNKGEDFATLAKEKSTDI 201


>gi|224436614|ref|ZP_03657623.1| hypothetical protein HcinC1_01640 [Helicobacter cinaedi CCUG 18818]
 gi|313143113|ref|ZP_07805306.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128144|gb|EFR45761.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 492

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 73/361 (20%), Positives = 146/361 (40%), Gaps = 25/361 (6%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQ--KIGFVVNSERARSVGLDKKILDNLVS 95
           S +  V  VG   +  + F   + + L   SQ  + G +++  +A+  G+ +  L  L+ 
Sbjct: 34  SSNDKVARVGDIDIHLAEFQREYARILNEFSQISQFGGMLDEAQAKQFGIPQMALQRLIQ 93

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              +     D+GL      V  EI  + ++     +FS +V+   L  +G++  E+ +  
Sbjct: 94  QVQILNLANDLGLVVSDKEVGEEIVNAKVYVDDKGEFSQEVYRKALKEQGMSPSEFEEMV 153

Query: 156 TKMLSRTDVVGMF----VGGMRP---SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
            K+L+   +  +     VG M P   S +   +      +   V+ + ++  ++    D 
Sbjct: 154 RKILTTQKLFSVMNITQVGPMLPISSSEMAALEMANAVRDRLRVEILPMDKVNIEIEDDE 213

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
               L  ++EK  +N+++P   +I YIL     +      ++++L   Y+  K  Y    
Sbjct: 214 ----LKAFWEKNAENWKSPMEFKIEYILVPFASQNP----TDEDLTKHYQDFKSDYLDEN 265

Query: 269 IRTVEQLVFPNQKEA----DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-V 323
                 L F   KE      +  Q+    K+  +  + + K    +SL    + ++ + V
Sbjct: 266 GNL---LSFEESKEKLIKDVQKIQAESVAKREYRDLKNKSKKGEILSLKENERFFVKNGV 322

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
            L      +A+ G     I    G+V   + + KPS   SF+E K +       +K  EK
Sbjct: 323 DLVIEDMKVAQVGQVLKPIEVDKGFVTLRILDKKPSVQKSFEEAKAEAKVLFESSKKREK 382

Query: 384 V 384
           +
Sbjct: 383 L 383


>gi|90021259|ref|YP_527086.1| peptidase M20D, amidohydrolase [Saccharophagus degradans 2-40]
 gi|89950859|gb|ABD80874.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus
           degradans 2-40]
          Length = 621

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 67/341 (19%), Positives = 142/341 (41%), Gaps = 36/341 (10%)

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +++  +  +  PE   + YI   V E  K I +   +++A+YE+ K  +       +  +
Sbjct: 214 YYQANQQEFSVPEKVSVDYIEISVAEIAKTIAVDEADIKAQYEQEKADFVESSEYEIAHI 273

Query: 276 VFPNQKEA----DEAFQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPD 322
           +  +  E+    +E    L  G+ F  LAE         E G SL  ++ G F +E+   
Sbjct: 274 LIADGDESASKIEEVQTQLAAGEAFETLAETYSDDFGSRETGGSLGVLTTGIFPEEF--- 330

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                ++++L ++G+ +  +    G     V++ K     S++E K +I   ++  +A  
Sbjct: 331 ---EQAVYAL-EEGEVSEPVTTDAGTHFIKVTSKKVEALASYEERKPEIKKAIQNLRAES 386

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD--FAGKDVKGKEVAAIPYKEQLL 440
              + Y  LEE       +   + +  +     PL +  F     K  +V    + E +L
Sbjct: 387 FYVDQYAELEELTFNAGDLTVAADQLGLTVKQSPLFERNFGNGVAKEVKVRNAAFSEDVL 446

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
               G++ P+     + + +   M ++ +   P     LE V + +++  +    A+ V 
Sbjct: 447 LS--GRNSPV-----IEISNSKAMVLRKRTHNPEHIAALELVSSQIQQKLQ----AQAVQ 495

Query: 501 SKANQLVLEYSKE---GKNFRDIGKNLGASLLTTNQINRMD 538
           +K  +L      E   GK+ +++ ++LG  +     + RMD
Sbjct: 496 AKLAELAKNIQSEIAAGKSPKEVAESLGYDIAEHELVKRMD 536


>gi|188527796|ref|YP_001910483.1| conserved hypothetical secreted protein [Helicobacter pylori
           Shi470]
 gi|188144036|gb|ACD48453.1| conserved hypothetical secreted protein [Helicobacter pylori
           Shi470]
          Length = 517

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 31  MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 89

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 90  YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 149

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 150 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 205

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 206 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 262

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 263 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 291


>gi|317177768|dbj|BAJ55557.1| hypothetical protein HPF16_0960 [Helicobacter pylori F16]
          Length = 487

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261


>gi|325981462|ref|YP_004293864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
 gi|325530981|gb|ADZ25702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
          Length = 264

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 73/138 (52%), Gaps = 10/138 (7%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++S+D L+ EY+  + +    E +    ++  N+ EA +   SLKKG  F ++AEE  KS
Sbjct: 115 QVSDDTLRKEYDVLRVQMGDKEYKA-RHILVENENEARDIIASLKKGGNFAKIAEE--KS 171

Query: 307 LSDISLGSFSK-EYIPDVS----LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           + D S  +  +  + P  +     ++++  L+K G     +  SFG+ +  + +I+P   
Sbjct: 172 IDDGSKENGGELNWSPPAAYVRPFSEALVKLSKGGMTEQPVQTSFGWHVIQLMDIRPMEV 231

Query: 362 VSFQEVKKDIANQMRITK 379
             F+EVK++I  Q R+ +
Sbjct: 232 PPFEEVKQNI--QQRVLQ 247


>gi|310658175|ref|YP_003935896.1| ppic-type peptidyl-prolyl cis-trans isomerase [Clostridium
           sticklandii DSM 519]
 gi|308824953|emb|CBH20991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           sticklandii]
          Length = 249

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 16/175 (9%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           ++A     FEK K+N+   +Y   + I          + ++++EL+A Y +NKE + SP+
Sbjct: 66  NDAKFQSEFEKLKENF-VTQYSIQNLI--------NSVSVTHEELEAYYNENKEGFISPQ 116

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI---SLGSFSK-EYIPDVS 324
                 ++  +   A+E    L +G+ F  LA+E     S      LG F + + +P+  
Sbjct: 117 KVQASHILVSDVSLAEEVKGKLAQGESFEALAKEYSSCPSKERGGDLGMFGEGQMVPE-- 174

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
             ++ F +A  G+ +  +   FG+ I  V++ + S  +SF+EV+ ++   M   K
Sbjct: 175 FEEAAFKMA-VGEISEPVETQFGFHIIKVTDKQESGLLSFEEVRSNLLRNMMAEK 228


>gi|217033935|ref|ZP_03439358.1| hypothetical protein HP9810_883g5 [Helicobacter pylori 98-10]
 gi|216943568|gb|EEC23016.1| hypothetical protein HP9810_883g5 [Helicobacter pylori 98-10]
          Length = 487

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SGSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261


>gi|222053408|ref|YP_002535770.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
 gi|221562697|gb|ACM18669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
          Length = 296

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 25/186 (13%)

Query: 225 RAPEYK-RISYIL--FDVHEKEKKI-----EISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           R PE K ++SYI+  F   E  +K+     E+ + EL+  Y+++++ +  PE   V  + 
Sbjct: 87  RKPEVKEQLSYIIDQFLGQEYLRKVVTANVEVPDAELKKYYQEHEKDFVVPERVKVRHIY 146

Query: 277 FPNQKEA------------DEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYI 320
           F   K+A            ++  + LKKG  F +LA E  +     +    LG  +    
Sbjct: 147 FAAAKDATAEVKAQARAKAEKIAEQLKKGGDFAKLAGENSEDTESAANGGDLGYLTPGKT 206

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                  + FSL K G+ +PV+   FGY I  V   +   T +F+E K  I++ ++    
Sbjct: 207 NSEEFEKAAFSL-KAGEVSPVVETPFGYHIIKVDERQEKRTATFEETKDYISSTLKAQLE 265

Query: 381 SEKVKE 386
            +K +E
Sbjct: 266 EKKARE 271


>gi|217032656|ref|ZP_03438143.1| hypothetical protein HPB128_19g17 [Helicobacter pylori B128]
 gi|298736064|ref|YP_003728589.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori B8]
 gi|216945666|gb|EEC24294.1| hypothetical protein HPB128_19g17 [Helicobacter pylori B128]
 gi|298355253|emb|CBI66125.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori B8]
          Length = 487

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261


>gi|118497644|ref|YP_898694.1| hypothetical protein FTN_1053 [Francisella tularensis subsp.
           novicida U112]
 gi|195536345|ref|ZP_03079352.1| numod1 domain family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|118423550|gb|ABK89940.1| outer membrane protein of unknown function [Francisella novicida
           U112]
 gi|194372822|gb|EDX27533.1| numod1 domain family protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 477

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 24/228 (10%)

Query: 97  ATLDQFIEDIGLEADHGR---------VWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGI 146
           A L Q I+   + AD  R         +   I  +P+F  KD KFS +     +A   G+
Sbjct: 72  AILSQMIDQYLILADAQRHDIVVSKLALQSAIFTNPMFFDKDGKFSAEKLKQVVAYLGGM 131

Query: 147 NEKEYI---DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
           ++ E I   +    ++ +T +V  F+     + LL       Y  N+ +DY+ ++     
Sbjct: 132 DKLEQILAKNIQATIIPKT-IVDTFIVTDYDTKLL----NSIYSVNKYIDYLKVSPADFK 186

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE- 262
           +   PS   L  +++ +K+ Y  P  K ISY +        K +IS DE++A Y+ +KE 
Sbjct: 187 SQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKDNFVPKNKISEDEIKAYYQAHKEL 246

Query: 263 -KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKS 306
            K F    ++  Q +  N + A E F    +     K+ +L ++ GK+
Sbjct: 247 FKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIKYTKLEKQFGKA 293


>gi|317012785|gb|ADU83393.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
           [Helicobacter pylori Lithuania75]
          Length = 487

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 123/274 (44%), Gaps = 19/274 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYNFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            L+Q+    +   ++R +D ++LN   V    +     + +++E +K +++ P   +   
Sbjct: 176 -LEQSSLSLWAKLQDR-LDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRS 231

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           + FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 232 LYFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261


>gi|332673819|gb|AEE70636.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 83]
          Length = 487

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKE 261


>gi|308183127|ref|YP_003927254.1| conserved hypothetical secreted protein [Helicobacter pylori
           PeCan4]
 gi|308065312|gb|ADO07204.1| conserved hypothetical secreted protein [Helicobacter pylori
           PeCan4]
          Length = 487

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 121/273 (44%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F+ +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFNEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPISFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKE 261


>gi|307637665|gb|ADN80115.1| Peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 908]
 gi|325996265|gb|ADZ51670.1| Peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 2018]
 gi|325997854|gb|ADZ50062.1| putative peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori
           2017]
          Length = 487

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 137/309 (44%), Gaps = 28/309 (9%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E ++ +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYENHRKDFKKPTSFKTHSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV---FPNQKEADEAF 287
            FD   ++  ++    EL+  Y KNK  Y   E      ++V++ V      QK  ++A 
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 288 QS---LKKG 293
           +S   LKKG
Sbjct: 289 RSYIALKKG 297


>gi|134302065|ref|YP_001122034.1| hypothetical protein FTW_1101 [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049842|gb|ABO46913.1| hypothetical protein FTW_1101 [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 476

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 130/309 (42%), Gaps = 35/309 (11%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           K   TW+  I +  +FV   I G++    ++   + V  VG  ++    F   + Q    
Sbjct: 10  KGPFTWIVVISISFIFV---ISGMTFFFTNIGSRAYVAKVGDNEISSQQF-QQYAQSATT 65

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
             QK   +       S  +D+ ++  L      D  +  + L++        I  +P+F 
Sbjct: 66  EEQKRAIL-------SQMIDQYLI--LADAQRHDIVVSKLALQS-------AIFTNPMFF 109

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF- 185
            KD KFS +     +A  G      +D   ++L++     +    +  ++++ D   +  
Sbjct: 110 DKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDTKLL 164

Query: 186 ---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
              Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +      
Sbjct: 165 NSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKDNF 224

Query: 243 EKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFI 297
             K +IS DE++A Y+ +KE  K F    ++  Q +  N + A E F    +     K+ 
Sbjct: 225 VLKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIKYT 283

Query: 298 QLAEEQGKS 306
           +L ++ GK+
Sbjct: 284 KLEKQFGKA 292


>gi|294340130|emb|CAZ88501.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas
           sp. 3As]
          Length = 262

 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 81/158 (51%), Gaps = 13/158 (8%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           +K  I++ +++AEY+K  + + S E +  + ++ P++KEA +    LKKG KF +LA++ 
Sbjct: 109 QKHPITDAQIKAEYDKFVKSFGSTEYK-AQHILVPSEKEAQDIIAQLKKGAKFSELAKKY 167

Query: 304 GKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIK 357
            K     + G     S    Y+P    A ++ +L K G +T   +   FG+ +  +   +
Sbjct: 168 SKDTGSAANGGDLGWSTPNNYVP--PFAKALEAL-KPGQYTQTPVQSQFGWHVIKLDATR 224

Query: 358 PSFTVSFQEVKKDIANQMR---ITKASEKVKEDYKRLE 392
           P+   +  ++K  I  +++   +TK  ++++   K  E
Sbjct: 225 PAKAPTLDQLKPQIQAELQRQEVTKYQDELRAKAKITE 262


>gi|254373010|ref|ZP_04988499.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570737|gb|EDN36391.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 477

 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 133/311 (42%), Gaps = 38/311 (12%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQEL 64
           K   TW+  I +  +FV   I G++   F+  GSS   V  VG  ++    F+  + Q  
Sbjct: 10  KGPFTWIVVISISFIFV---ISGMT-FFFTNIGSSRAYVAKVGDNEISSQQFL-QYAQSA 64

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
               QK   +       S  +D+ ++  L      D  +  + L++        I  +P+
Sbjct: 65  TTEEQKRAIL-------SQMIDQYLI--LADAQRHDIVVSKLALQS-------AIFTNPM 108

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F  KD KFS +     +A  G      +D   ++L++     +    +  ++++ D   +
Sbjct: 109 FFDKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDTK 163

Query: 185 F----YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +    
Sbjct: 164 LLNSIYSVNKYIDYLKVSPADFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKD 223

Query: 241 EKEKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KK 295
               K +IS DE++A Y+ +KE  K F    ++  Q +  N + A E F    +     K
Sbjct: 224 NFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIK 282

Query: 296 FIQLAEEQGKS 306
           + +L ++ GK+
Sbjct: 283 YTKLEKQFGKA 293


>gi|313672612|ref|YP_004050723.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939368|gb|ADR18560.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 313

 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 14/148 (9%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEA----DEAFQSLKKGK 294
           K I+I+  E +  YEKNK+ +  PE+     ++       N K+A    D  ++ LK GK
Sbjct: 144 KDIKITEQEKKDFYEKNKDIFKDPEMVKASHILIKVDDKQNDKDAKSKIDSIYKELKSGK 203

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA---KKGDFTPVIHGSFGYVIA 351
            F +LA++  +  S  + G     + P  ++     ++A     G F+      +GY I 
Sbjct: 204 SFEELAKKYSQDGSAANGGDLG--FFPRGAMVKEFENVAFSTPAGKFSEPFKTQYGYHIV 261

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITK 379
            V+  +P+ T +++EV   I  ++R+ K
Sbjct: 262 KVTEKRPAKTYTYEEVSNHIEGKLRMDK 289


>gi|317009631|gb|ADU80211.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori India7]
          Length = 487

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTRFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261


>gi|317182276|dbj|BAJ60060.1| hypothetical protein HPF57_0986 [Helicobacter pylori F57]
          Length = 487

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 54/273 (19%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   +    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDIKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261


>gi|296272150|ref|YP_003654781.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096325|gb|ADG92275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
           nitrofigilis DSM 7299]
          Length = 269

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 18/159 (11%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-----KKGKKFIQL 299
           K++ ++ E ++ Y+KNKEK+ +P+      ++   +KEA++    L     KKG  F +L
Sbjct: 108 KVKATDAEEKSFYDKNKEKFKTPDTLEASHILVKTEKEANDIIAKLNIAKNKKG-SFEEL 166

Query: 300 AEEQGKSLSDIS---LGSF-SKEYIPDVSLADSIFSLA-KKGDFT--PVIHGSFGYVIAH 352
           A++     +      LG F +K+ +P+ S A    +LA KKG++T  PV    FGY + +
Sbjct: 167 AKKFSIGPTKTKGGYLGKFQAKQMVPEFSKA----ALALKKGEYTKKPV-KTQFGYHVIY 221

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + N + S  + F +VK +IA  +   K  + +KE+ ++L
Sbjct: 222 LENKEVSQILPFDKVKANIAKMIVQEKYGKMIKEEVEKL 260


>gi|115314710|ref|YP_763433.1| hypothetical protein FTH_0881 [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502314|ref|YP_001428379.1| hypothetical protein FTA_0947 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254369242|ref|ZP_04985254.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953593|ref|ZP_06558214.1| peptidyl-prolyl cis-trans isomerase D [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313094|ref|ZP_06803784.1| peptidyl-prolyl cis-trans isomerase D [Francisella tularensis
           subsp. holarctica URFT1]
 gi|115129609|gb|ABI82796.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156252917|gb|ABU61423.1| hypothetical protein FTA_0947 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122192|gb|EDO66332.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 477

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 109/271 (40%), Gaps = 50/271 (18%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQEL 64
           K   TW+  I +  +FV   I G++   F+  GSS   V  VG  ++    F        
Sbjct: 10  KGPFTWIVVISISFIFV---ISGMT-FFFTNIGSSRAYVAKVGDNEISSQQF-------- 57

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR---------V 115
               Q +      E+ R++               L Q I+   + AD  R         +
Sbjct: 58  ---QQYVQSATTEEQKRAI---------------LSQMIDQYLILADAQRHDIVVSKLAL 99

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P+F  KD KFS +     +A  G      +D   ++L++     +    +  +
Sbjct: 100 QSAIFTNPMFFDKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDT 154

Query: 176 NLLLDQAKRF----YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           +++ D   +     Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K 
Sbjct: 155 SIVTDYDTKLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKT 214

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
           ISY +        K +IS DE++A Y+ +KE
Sbjct: 215 ISYFIITKDNFVPKNKISEDEIKAYYQAHKE 245


>gi|320106474|ref|YP_004182064.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
           saanensis SP1PR4]
 gi|319924995|gb|ADV82070.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
           saanensis SP1PR4]
          Length = 275

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 11/136 (8%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVF----PN-----QKEADEAFQSLKKGKKFIQL 299
           S +E++  YE+++ ++  PE   V  ++     P      Q +  +A   L  GK F ++
Sbjct: 116 SREEVERYYEQHRVEFHQPERIEVAHIICNIDRPEDRAVAQSKMQQAEMELNTGKPFQKV 175

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           AE+       + LG  ++  + +    + +F+L K+ + + +    FG  IA V NIKP+
Sbjct: 176 AEKYSDCGGKVPLGWITRGVMVE-EFDEVVFTL-KRNERSEIFSSRFGLHIATVLNIKPA 233

Query: 360 FTVSFQEVKKDIANQM 375
                QEVK  IA +M
Sbjct: 234 GYEPLQEVKLSIAKRM 249


>gi|126641683|ref|YP_001084667.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii ATCC 17978]
 gi|126387567|gb|ABO12065.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii ATCC 17978]
          Length = 286

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 116/295 (39%), Gaps = 42/295 (14%)

Query: 93  LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
           +VS   L Q  E +G+     ++   +A+ P    ++ +FS  ++ + L   G+  +  I
Sbjct: 1   MVSRNLLIQQAEKLGISLSDAQIEQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLI 59

Query: 153 -----DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA- 206
                DH  KML+ T     F      S + L Q      E R++        H+ +I  
Sbjct: 60  ASLRQDHALKMLTST-----FADYSLVSKVDLMQIANLQTEQRTL--------HLASIKL 106

Query: 207 DP-------SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
           DP       SN   T ++ K+++ ++ P    + Y++       K    ++ EL+  Y K
Sbjct: 107 DPYKTGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAK 166

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------GKKFIQLAEEQGKSLSDIS 311
             E       R V+ ++       D A Q L K        G  F Q A +  +  +  +
Sbjct: 167 FVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKT 226

Query: 312 LGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHV---SNIKPSF 360
            G   + Y P V   +   ++ SL K G  +  +   +GY I      +N  PSF
Sbjct: 227 KGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHIIEAETQANQIPSF 280


>gi|118581987|ref|YP_903237.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
 gi|118504697|gb|ABL01180.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
          Length = 300

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 12/169 (7%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           KR+    F   + E   +IS+ +L+  Y++N +K+ + E      ++   +KEA E    
Sbjct: 110 KRLIVEAFLKKKVETDAQISDADLKKFYDQNIDKFKAGEQIRASHILVKTEKEAKEILAQ 169

Query: 290 LKKGKKFIQLAEEQG---KSLSDISLGSFSK-EYIPDVSLADSIFSLA-KKGDFTPVIHG 344
           LK G  F +LA +      S     LG F K   +P    A    +LA K+G  + V+  
Sbjct: 170 LKGGAAFEELARKHSVDSSSAKGGDLGWFGKGAMVPAFERA----ALALKEGQVSDVVKS 225

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE---KVKEDYKR 390
            FG+ I  ++  +P+ T  F EVK  I   +  +K  E   K+K++ K+
Sbjct: 226 DFGFHIIKLTGKRPAGTRPFDEVKDQIKAALMPSKQQEIFQKIKDELKK 274


>gi|295111179|emb|CBL27929.1| Parvulin-like peptidyl-prolyl isomerase [Synergistetes bacterium
           SGP1]
          Length = 303

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 25/165 (15%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEAFQ---SLKKGKKFIQL 299
           K ++ + +E Q  Y+++K+++  PE I     L+  +   AD   +    LK G  F   
Sbjct: 124 KDVKATEEEAQKFYDEHKDQFTQPERIHARHILISDDATSADTIARVQADLKAGASF--- 180

Query: 300 AEEQGKSLSDIS-------LGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            +E+ K LS          LG F+KE  +P+ S  D+ F+L + GD +  +   FG+ I 
Sbjct: 181 -DEEAKKLSLCPSAPQGGDLGEFTKEQMVPEFS--DAAFALKEPGDVSEPVKSPFGWHII 237

Query: 352 HVSNIKPSFTVSFQEVKKDI-------ANQMRITKASEKVKEDYK 389
            +    P+  + F +VK  I         Q RI    E++K+ YK
Sbjct: 238 RLEGRTPAQLIPFDDVKDQILQDLTGQQQQERIKAKVEELKKAYK 282


>gi|212696251|ref|ZP_03304379.1| hypothetical protein ANHYDRO_00787 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676880|gb|EEB36487.1| hypothetical protein ANHYDRO_00787 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 248

 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 14/157 (8%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE- 302
           K I++S+DEL+  Y+ NKE    P+      ++  ++ EA++  + +K G +F + A++ 
Sbjct: 91  KDIKVSDDELKEYYDNNKEVIKQPKTYKASHILVDSEDEANKILEEIKAGLEFEKAADKY 150

Query: 303 ------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
                 +G  L +   G+  KE+   +   D       +G+ +  +   FGY I  + + 
Sbjct: 151 STDKASKGGDLGEFPQGAMVKEFEEALDKLD-------EGEISNPVKSQFGYHIIKLDHT 203

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +    F E+K  I + + + K  EK  E   +++E
Sbjct: 204 HNAHLPEFNEIKDRIHDTLLMIKRQEKYLEKTNKIKE 240


>gi|157164251|ref|YP_001467105.1| holo-[acyl-carrier-protein] synthase [Campylobacter concisus 13826]
 gi|112801387|gb|EAT98731.1| foldase protein PrsA [Campylobacter concisus 13826]
          Length = 272

 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQL 299
           I++S+ +L+  Y KNK     P       ++  ++K A++    LK  KG    KKF +L
Sbjct: 109 IKVSDSDLRDFYNKNKASMNQPAQARARHILVEDEKTANDIIAQLKNLKGEVLTKKFAEL 168

Query: 300 AEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A ++    G +     LG F +  +     AD+ FS+A     T  +   FGY +    +
Sbjct: 169 ASQKSIDKGSAAHGGELGWFGQSQMVK-PFADAAFSMANGTVSTKPVKTQFGYHVILKED 227

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            K + TVSF++ K +I   +++ K    V++  + L +
Sbjct: 228 GKAAGTVSFEQAKPEIEQAVKMEKFQAAVRQKSEALRQ 265


>gi|154148381|ref|YP_001406634.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
 gi|153804390|gb|ABS51397.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
          Length = 275

 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 15/160 (9%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------GKKFI 297
           KK+ +S+DE +  YE+N   +  PE  +   ++   +KEA      L K       K+F 
Sbjct: 104 KKVNVSDDEAKKFYEENNASFVIPEQISASHILVKEEKEAKNIISKLSKLKGEKLSKEFA 163

Query: 298 QLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIA 351
           ++A E+    G   +  +LG F K  + +     ++F L KKG+ T  PV    FGY I 
Sbjct: 164 KIASEKSIDNGTKQNGGALGFFQKGQMVE-PFEKAVFGL-KKGELTKQPV-KTQFGYHII 220

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             ++ K + T+ F+ VK  I N ++  K  +++ E  + L
Sbjct: 221 LKTDEKKASTLPFESVKNAIINNIKGQKFQKQIDEKAEAL 260


>gi|302187980|ref|ZP_07264653.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           syringae 642]
          Length = 627

 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 90/420 (21%), Positives = 176/420 (41%), Gaps = 44/420 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +      N  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDIS----QNEL 56

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112
            Q + M  +++   ++ +  +      LD+K+L       L+    L Q   D       
Sbjct: 57  SQAVDMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSD 116

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             +  ++ ++P F   D KFS D F   + + G +  ++     +ML +  ++G    G+
Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLIGQVRAGV 171

Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225
             S  + D Q + F   E ++ D+  L    +PA  D S   +T       ++++   + 
Sbjct: 172 AGSAFVTDAQVEAFARLEKQTRDFASLT---LPA--DTSAVKVTDDEVKAHYDEHAKEFM 226

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK---- 281
           +PE   + YI         K+++ +++LQA Y+K      S + R    L+  N K    
Sbjct: 227 SPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNEE 285

Query: 282 ----EADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
               + +E  Q L KG+ F  LA+E     G S     LG ++ + + D +  +++++L 
Sbjct: 286 QAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLG-YAGKGVYDPAFEEALYALN 344

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           K     PV    FG+ +  +  ++     +F  +K  + N ++     +K  E  K+LE+
Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQKFVEVTKQLED 403


>gi|257458734|ref|ZP_05623857.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
 gi|257443722|gb|EEV18842.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
          Length = 485

 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++K  ++ +  I++  + FV   F+ WG  D   + +GS  +  VG+  +      
Sbjct: 1   MIEWMQKHKKSLIPTIWISTIAFVGAGFVGWGAYDMNANRAGS--IARVGQISITNQELN 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + +    +S         E+A+++ LD+  +D L+  A    F +D+G++A    V  
Sbjct: 59  TKYSELYNRLSAMSDGQFTQEQAKNMHLDQIAVDQLIGEAYFLNFAKDLGIQASDKDVAE 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
            +  SP F  ++  FS +++ + +   G+ +KE+  +  K+L+
Sbjct: 119 FVVSSPNFQ-ENGAFSKELYDNVVRNSGLTKKEFERNLQKVLT 160


>gi|321313742|ref|YP_004206029.1| hypothetical protein BSn5_11930 [Bacillus subtilis BSn5]
 gi|320020016|gb|ADV95002.1| hypothetical protein BSn5_11930 [Bacillus subtilis BSn5]
          Length = 297

 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           + I+ISN EL++ Y KNKE Y   +   +  +V  +++EA E  + LK G  F  +A E+
Sbjct: 131 RDIDISNKELESFYHKNKELYQFDDSYRIRHIVVKDEEEAREVLKELKGGSSFEAVAAER 190

Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                      D+   + + + IP   + ++      +    P I  S GY I  +    
Sbjct: 191 STDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKEDEWSQEP-IKVSNGYAIIQLKEKL 249

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384
            + T SF EVK  I  Q+ + +  +K 
Sbjct: 250 KARTFSFDEVKDQIRRQIAMDQLGDKA 276


>gi|208434878|ref|YP_002266544.1| peptidyl-prolylcis-transisomerase D [Helicobacter pylori G27]
 gi|208432807|gb|ACI27678.1| peptidyl-prolylcis-transisomerase D [Helicobacter pylori G27]
          Length = 505

 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 19  MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 77

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 78  YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 137

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 138 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP--- 193

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 194 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 250

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 251 YFDAGLEKTDLK----ELEEYYHKNKVSYLDKE 279


>gi|171060558|ref|YP_001792907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
 gi|170778003|gb|ACB36142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
          Length = 336

 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 123/324 (37%), Gaps = 69/324 (21%)

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
           I  + N  RAR   L ++ LD L+    L Q    +GLEAD   V   I        +  
Sbjct: 71  IARLQNPARARE--LRREALDRLIGIELLGQQARALGLEADDAAVERAIT-----EARSR 123

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
             S +VF  R+A EG +E  + +H  K+LS          G R                R
Sbjct: 124 FRSAEVFAQRIAIEGHDEASHREHTRKLLS----------GER-------------LAQR 160

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
            VD  V    H+      + A +  + E     +R PE  R+  +L  +           
Sbjct: 161 IVDREV----HI------TEADIAAFHEANPALFRRPEQVRVRQLLVAL----------- 199

Query: 251 DELQAEYEKNKEKYFSPEIRT-VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
                    + E     + R+ +E L+   +  A E+F++L +         + G +L  
Sbjct: 200 -------PADAEPALKAQARSRIEALLV--RARAGESFEALARTHSDAP-TRQWGGALDP 249

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
              GS  +      ++ D+ F+LA  G  + VI  S G+ I  +     + +V   EV++
Sbjct: 250 FGRGSQPR------AIEDAAFALA-PGALSEVIETSAGWQILQLDERIAAVSVPLDEVRE 302

Query: 370 DIANQMRITKASEKVKEDYKRLEE 393
            I   +   +  + V+ +  RL E
Sbjct: 303 RIRRHLHDGRGQQAVEREIARLRE 326


>gi|319654925|ref|ZP_08008999.1| hypothetical protein HMPREF1013_05621 [Bacillus sp. 2_A_57_CT2]
 gi|317393350|gb|EFV74114.1| hypothetical protein HMPREF1013_05621 [Bacillus sp. 2_A_57_CT2]
          Length = 288

 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 8/138 (5%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           + +S +E+++ YE+N  ++  P+   + Q++   ++EA++  + L +G  F  LA E+  
Sbjct: 128 VSVSEEEMKSYYEQNSSQFQVPDTYHISQIIVKTKEEAEQTLKELDEGSSFSVLAMERSI 187

Query: 306 SLSDISLG------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
                SLG      S   E+IP   + + + +L K G +T  I    GY +  +      
Sbjct: 188 DEFTASLGGNAGYVSEDDEHIP-AEVFEQVKTL-KPGKWTKPIKTENGYAVVMLHEHLKG 245

Query: 360 FTVSFQEVKKDIANQMRI 377
              SF+EVK  I  Q+ +
Sbjct: 246 ENYSFKEVKSMIRRQIAL 263


>gi|325846640|ref|ZP_08169555.1| putative peptidylprolyl isomerase PrsA3 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481398|gb|EGC84439.1| putative peptidylprolyl isomerase PrsA3 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 248

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 73/157 (46%), Gaps = 14/157 (8%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE- 302
           K I++S+DEL+  Y+ NKE    P+      ++  ++ EA++  + +K G +F + A++ 
Sbjct: 91  KDIKVSDDELKEYYDNNKEVIKQPKTYKASHILVDSEDEANKILEEIKAGLEFEKAADKY 150

Query: 303 ------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
                 +G  L +   G+  KE+       +       +G+ +  +   FGY I  + + 
Sbjct: 151 STDKASKGGDLGEFPQGAMVKEF-------EEALDKLNEGEISKPVKSQFGYHIIKLDHT 203

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +    F E+K  I + + + K  EK  E   +++E
Sbjct: 204 HDAHLPEFDEIKDRIHDTLLMIKRQEKYLEKTNKIKE 240


>gi|296135908|ref|YP_003643150.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
 gi|295796030|gb|ADG30820.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
          Length = 262

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 80/158 (50%), Gaps = 13/158 (8%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           +K  I+  +++AEY+K  + + S E +  + ++ P++KEA +    LKKG KF +LA++ 
Sbjct: 109 QKHPITEAQIKAEYDKFVKSFGSTEYK-AQHILVPSEKEAQDIIAQLKKGAKFSELAKKY 167

Query: 304 GKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIK 357
            K     + G     S    Y+P    A ++ +L K G +T   +   FG+ +  +   +
Sbjct: 168 SKDTGSAANGGDLGWSTPNNYVP--PFAKALEAL-KPGQYTQTPVQSQFGWHVIKLDATR 224

Query: 358 PSFTVSFQEVKKDIANQMR---ITKASEKVKEDYKRLE 392
           P+   +  ++K  I  +++   +TK  ++++   K  E
Sbjct: 225 PAKAPTLDQLKPQIQAELQRQEVTKYQDELRAKAKITE 262


>gi|16077140|ref|NP_387953.1| protein secretion PrsA [Bacillus subtilis subsp. subtilis str. 168]
 gi|221307882|ref|ZP_03589729.1| hypothetical protein Bsubs1_00365 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312204|ref|ZP_03594009.1| hypothetical protein BsubsN3_00365 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317137|ref|ZP_03598431.1| hypothetical protein BsubsJ_00365 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321400|ref|ZP_03602694.1| hypothetical protein BsubsS_00365 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|586895|sp|P37566|YACD_BACSU RecName: Full=Uncharacterized protein yacD
 gi|467461|dbj|BAA05307.1| unknown [Bacillus subtilis]
 gi|2632339|emb|CAB11848.1| putative protein secretion PrsA homolog [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 297

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           + I+ISN EL++ Y KNKE Y   +   +  +V  +++EA E  + LK G  F  +A E+
Sbjct: 131 RDIDISNKELESFYNKNKELYQFDDSYRIRHIVVKDEEEAREVLKELKGGSSFEAVAAER 190

Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                      D+   + + + IP   + ++      +    P I  S GY I  +    
Sbjct: 191 STDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKEDEWSQEP-IKVSNGYAIIQLKEKL 249

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384
            + T SF EVK  I  Q+ + +  +K 
Sbjct: 250 KARTFSFDEVKDQIRRQIAMDQLGDKA 276


>gi|15645592|ref|NP_207768.1| hypothetical protein HP0977 [Helicobacter pylori 26695]
 gi|2314119|gb|AAD08023.1| conserved hypothetical secreted protein [Helicobacter pylori 26695]
          Length = 487

 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 60  YRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261


>gi|227485003|ref|ZP_03915319.1| possible peptidylprolyl isomerase PrsA [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237000|gb|EEI87015.1| possible peptidylprolyl isomerase PrsA [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 343

 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 24/218 (11%)

Query: 155 YTKML-SRTDVVGMFVGGMRPSNLLLD--QAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
           Y  ML SR ++    V  M    L+ D  +A +    ++ V+   LN+       +  + 
Sbjct: 67  YGSMLASRQNLKNSIVQMMVQDKLIADDMKANKIEISDKEVNDAFLNSVKQFGGQEQFDK 126

Query: 212 VLTQW---FEKYKDNYRAPEYKRISYILFDVHEK--EKKIEISNDELQAEYEKNKEKYFS 266
           +L  +    EK+K+  +         +++  H +  EK+  ++ +E++  YE NK+K+  
Sbjct: 127 MLDDYNMDVEKFKETVKKD-------LMYKKHREWFEKEHPVTEEEIKQYYEDNKDKFAK 179

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPD 322
              R    ++  ++K A E    L KG  F  LA+E  K  ++ +    LG+FS+  +  
Sbjct: 180 ---RDASHILVADEKTAKEVKDKLDKGADFAALAKEYSKDTANAANGGELGTFSRGQMV- 235

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
               D+ FSL K+G+ +  +   FGY I  V+ I  S 
Sbjct: 236 KEFEDAAFSL-KEGEISGPVKTQFGYHIIKVNKIADSI 272


>gi|328551773|gb|AEB22265.1| hypothetical protein BAMTA208_00365 [Bacillus amyloliquefaciens
           TA208]
 gi|328910033|gb|AEB61629.1| putative protein secretion PrsA [Bacillus amyloliquefaciens LL3]
          Length = 296

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           K I+IS+ E+Q+ Y KNKE Y   +   +  +V  +++EAD     LK G  F  +A E+
Sbjct: 130 KDIDISDKEMQSFYNKNKELYQFDDSYRIRHIVVKSKEEADRVLADLKGGSSFEAVAAER 189

Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                      D+   + ++E IP   + ++      +    P I  S GY +  +    
Sbjct: 190 STDRYTSQYGGDLGFVTENQENIPPAYITEAKNLKENEWSAEP-IKVSSGYAVIQLKEKL 248

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384
            + T S+ EVK  I  Q+ + +  +K 
Sbjct: 249 KARTFSYNEVKSQIRRQIAMDQLGDKA 275


>gi|308171963|ref|YP_003918668.1| protein secretion PrsA-like protein [Bacillus amyloliquefaciens DSM
           7]
 gi|307604827|emb|CBI41198.1| putative protein secretion PrsA homolog [Bacillus amyloliquefaciens
           DSM 7]
          Length = 296

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           K I+IS+ E+Q+ Y KNKE Y   +   +  +V  +++EAD     LK G  F  +A E+
Sbjct: 130 KDIDISDKEMQSFYNKNKELYQFDDSYRIRHIVVKSKEEADRVLADLKGGSSFEAVAAER 189

Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                      D+   + ++E IP   + ++      +    P I  S GY +  +    
Sbjct: 190 STDRYTSQYGGDLGFVTENQENIPPAYITEAKNLKENEWSAEP-IKVSSGYAVIQLKEKL 248

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384
            + T S+ EVK  I  Q+ + +  +K 
Sbjct: 249 KARTFSYNEVKSQIRRQIAMDQLGDKA 275


>gi|115525459|ref|YP_782370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
 gi|115519406|gb|ABJ07390.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
          Length = 353

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 17/145 (11%)

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--------FQSLKK-----GKKFI 297
           DE+Q  Y+ N+ +   P    + Q+   + K+AD+A         + ++K     G  F 
Sbjct: 180 DEIQKVYDANRGQLVVPRQYQLSQIFIASPKDADKATEDKARKKLEDIQKKLKAPGADFA 239

Query: 298 QLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +A E+  +     LGS  + + IP++     +  LAK G  +  I    G+ I  +++ 
Sbjct: 240 AIAGEESDAKGSADLGSIPENQLIPEIR--SHVVGLAK-GAVSDPIRLDAGWHIVKLTDT 296

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           K S+T +  EV+  +A QMR  +A+
Sbjct: 297 KASYTRTLPEVRDQLAQQMRKERAA 321


>gi|218961685|ref|YP_001741460.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730342|emb|CAO81254.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
          Length = 679

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 4/82 (4%)

Query: 217 FEKY-KDNYRAPEYKRISYILFDVHEK--EKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
           +EKY  +N    + KR SY+L    EK     IEI+++E+   YE+ KE++ +P  RT+E
Sbjct: 375 YEKYFSENEDYLQAKR-SYVLRRAFEKLVSDTIEITDEEIAERYEREKERFSTPAYRTIE 433

Query: 274 QLVFPNQKEADEAFQSLKKGKK 295
            L F N+K+A+ A++   K  K
Sbjct: 434 VLFFDNKKDANTAWKKYSKAYK 455


>gi|317011211|gb|ADU84958.1| hypothetical protein HPSA_04905 [Helicobacter pylori SouthAfrica7]
          Length = 487

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 137/309 (44%), Gaps = 28/309 (9%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S++   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SNSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  E+ +++ L+K  L+ L++ A L     D+GL A    +  
Sbjct: 60  YRRLKDAYAESIPDFKELTEEQIKAMHLEKSALNILINQALLRNLALDLGLGATKQEIAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   K+L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQNHYRPKHFEESVEKLLIVQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++L    V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILKPSDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV---FPNQKEADEAF 287
            FD + ++  ++    EL+  Y KNK  Y   E      ++V++ V      QK  ++A 
Sbjct: 233 YFDANLEKSDLK----ELEEYYNKNKASYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 288 QS---LKKG 293
           +S   LKKG
Sbjct: 289 RSYIALKKG 297


>gi|205375588|ref|ZP_03228375.1| protein secretion (post-translocation chaperonin) [Bacillus
           coahuilensis m4-4]
          Length = 301

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 12/151 (7%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           E +IE++++E+Q  ++ NK  +   E      ++  +++ A+E  Q L +G  F +LA E
Sbjct: 125 EDRIEVTDEEIQEYFDANKASFDQQEQVKASHILVEDEETANEVKQKLDEGGDFAELAAE 184

Query: 303 QGKSLSDIS----LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                S+ S    LG F K + +P+    ++ F  A+ G  T  +   FGY I  V   +
Sbjct: 185 YSTDTSNASQGGDLGFFGKGQMVPE--FEEAAFG-AEVGSITGPVQTDFGYHIIKVEEKQ 241

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
            +   + ++VK+++    R T   +K +++Y
Sbjct: 242 EAKEATLEDVKEEV----RETIKQQKQQQEY 268


>gi|189425796|ref|YP_001952973.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
 gi|189422055|gb|ACD96453.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
          Length = 335

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 23/169 (13%)

Query: 248 ISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEA-----------FQSLKKGKK 295
           +++ E++  Y+KN E +  PE +R    L+  + K  D              + +K G  
Sbjct: 168 VTDAEMKEFYDKNPETFTQPEQVRASHILITLDAKATDADKKKAKEKIEDLLKQVKAGAD 227

Query: 296 FIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F +LA+E     S      LG F K  +      ++ F++ K GD + V+   FGY I  
Sbjct: 228 FAKLAQENSGCPSSKQGGDLGYFGKGQMVK-PFEETAFAM-KPGDVSGVVETQFGYHIIK 285

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVK---EDYK---RLEEFL 395
           ++  K +  V+F EVK  IA+ ++  K +E +    ED K   ++E FL
Sbjct: 286 LTEKKAAAKVAFDEVKAKIADSLKRKKVTEAINATLEDAKKKAKIEVFL 334


>gi|118474611|ref|YP_891704.1| foldase protein PrsA [Campylobacter fetus subsp. fetus 82-40]
 gi|118413837|gb|ABK82257.1| foldase protein PrsA [Campylobacter fetus subsp. fetus 82-40]
          Length = 269

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 17/143 (11%)

Query: 248 ISNDELQAE--YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQL 299
           I  DE +A+  YE+NK+K+  P     + ++   +KEA +  +SL   KG    KKF ++
Sbjct: 106 IKVDEKKAKDFYEQNKDKFVVPAQAKAKHILVETEKEAADIIKSLNGLKGAALDKKFSEI 165

Query: 300 AEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHV 353
           A+E+      +++   LG F +  +   S + + F L KKG+ T  PV    FGY +   
Sbjct: 166 AKEKSIDKSSAVNGGELGWFGESQMV-ASFSKAAFGL-KKGEITNKPV-KSEFGYHVILK 222

Query: 354 SNIKPSFTVSFQEVKKDIANQMR 376
            ++K    V F + K +I NQM+
Sbjct: 223 EDMKDKSAVGFDKAKANIENQMK 245


>gi|317178673|dbj|BAJ56461.1| hypothetical protein HPF30_0364 [Helicobacter pylori F30]
          Length = 487

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 54/273 (19%), Positives = 119/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL      V  
Sbjct: 60  YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGTTKQEVAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++LN   V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 233 YFDASLEKPDLK----ELEKYYHKNKVSYLDKE 261


>gi|261886000|ref|ZP_06010039.1| foldase protein PrsA [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 268

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 17/143 (11%)

Query: 248 ISNDELQAE--YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQL 299
           I  DE +A+  YE+NK+K+  P     + ++   +KEA +  +SL   KG    KKF ++
Sbjct: 106 IKVDEKKAKDFYEQNKDKFVVPAQAKAKHILVETEKEAADIIKSLNGLKGAALDKKFSEI 165

Query: 300 AEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHV 353
           A+E+      +++   LG F +  +   S + + F L KKG+ T  PV    FGY +   
Sbjct: 166 AKEKSIDKSSAVNGGELGWFGESQMV-ASFSKAAFGL-KKGEITNKPV-KSEFGYHVILK 222

Query: 354 SNIKPSFTVSFQEVKKDIANQMR 376
            ++K    V F + K +I NQM+
Sbjct: 223 EDMKDKSAVGFDKAKANIENQMK 245


>gi|256751661|ref|ZP_05492536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749470|gb|EEU62499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 301

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 28/168 (16%)

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           LFD  E  K ++++ +EL+  YE NKE++   E      ++  ++K A++ +  L KG+ 
Sbjct: 134 LFD--EYTKDVKVTEEELKKYYEDNKEQF---ETVKASHILVVDEKTAEDIYNRLMKGED 188

Query: 296 FIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           F  LA+E         QG  L +   G    E+         +FSL KKG+ +  +   +
Sbjct: 189 FATLAKEYSVDTATKDQGGDLGEFPHGVMVPEF------DQVVFSL-KKGEISKPVKTDY 241

Query: 347 GYVIAHVSN--IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY I       IKP     F EVK  I + +   K ++ + E Y  LE
Sbjct: 242 GYHIIKSDGVIIKP-----FDEVKDTIESYLLDDKKNQVIIEKYDALE 284


>gi|258545268|ref|ZP_05705502.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
 gi|258519481|gb|EEV88340.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
          Length = 610

 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 67/361 (18%), Positives = 149/361 (41%), Gaps = 35/361 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+     +  + +++  +  L  G+    F+  G + + +V  Q+VP  ++   +
Sbjct: 25  MLEDIREKKTNRITYLLVIIAGIGMLFIGVP--YFNHGGETNIATVNGQEVPLRAYQEQY 82

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +     I Q+   +  ++      L ++ + +LV      Q       +A + R    + 
Sbjct: 83  RD----IQQQQPDLSETD------LKQRAVRSLVERTLFQQ-------QALNSRY--RLP 123

Query: 121 RSPLFHGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            S L+     +F +D  +   L   GI+ + Y        S              +N L 
Sbjct: 124 DSALYRIIKEQFGNDENYQQWLKSRGISAETYQQSVRSDQSIASYYSALQAAGGENNPLY 183

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
               +   + R      +    + A  + +++ L + +E + + Y  PE   I+Y ++D+
Sbjct: 184 QHYLQSAAQERGYTLYTIPRAPIAAAINVNDSALQKHYEAHGERYATPETVDINYTIYDI 243

Query: 240 HEKEKKIEISNDEL---QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
            +    + +S++++   +A  E+   +Y   +            K+  + F    +  + 
Sbjct: 244 AD----LPVSDEQIAKARAASERRGGRYLIIDDAKAASDAAAAIKDGRKTFADYWQDIQN 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             LA E G    +++L +  K   P+  L +++F+LAK GD +P+I   +G ++  + NI
Sbjct: 300 KTLAGESG----ELALAAKGKGTSPE--LDEALFALAKPGDVSPLIDSEYGKILVELGNI 353

Query: 357 K 357
           +
Sbjct: 354 E 354


>gi|315927333|gb|EFV06677.1| PPIC-type PPIASE domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 263

 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%)

Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291
           IL +V++++    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK 
Sbjct: 87  ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 146

Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            KGK    KF +LA+E+    G       LG F +  +      D+ F+L      T  +
Sbjct: 147 LKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 205

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +FGY +    N +    + F EVK+ I N ++
Sbjct: 206 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 239


>gi|57238208|ref|YP_178711.1| major antigenic peptide PEB4 [Campylobacter jejuni RM1221]
 gi|86149798|ref|ZP_01068027.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86151529|ref|ZP_01069743.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|88596967|ref|ZP_01100203.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|205355446|ref|ZP_03222217.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|218562247|ref|YP_002344026.1| major antigenic peptide PEB-cell binding factor [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|315124114|ref|YP_004066118.1| peptidyl-prolyl cis-trans isomerase [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|123141587|sp|Q0PAS1|CBF2_CAMJE RecName: Full=Cell-binding factor 2; AltName: Full=Major antigen
           peb4A; Flags: Precursor
 gi|671840|emb|CAA59175.1| cell binding factor 2 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|57167012|gb|AAW35791.1| major antigenic peptide PEB4 [Campylobacter jejuni RM1221]
 gi|85839616|gb|EAQ56876.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85841158|gb|EAQ58406.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|88190656|gb|EAQ94629.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359953|emb|CAL34742.1| major antigenic peptide PEB-cell binding factor [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|205346680|gb|EDZ33312.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|284925857|gb|ADC28209.1| major antigenic peptide PEB-cell binding facto [Campylobacter
           jejuni subsp. jejuni IA3902]
 gi|315017836|gb|ADT65929.1| peptidyl-prolyl cis-trans isomerase [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315058010|gb|ADT72339.1| Cell binding factor 2 precursor [Campylobacter jejuni subsp. jejuni
           S3]
 gi|315928817|gb|EFV08084.1| PPIC-type PPIASE domain protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 273

 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%)

Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291
           IL +V++++    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK 
Sbjct: 97  ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156

Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            KGK    KF +LA+E+    G       LG F +  +      D+ F+L      T  +
Sbjct: 157 LKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 215

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +FGY +    N +    + F EVK+ I N ++
Sbjct: 216 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 249


>gi|241763440|ref|ZP_04761494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
 gi|241367382|gb|EER61703.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
          Length = 247

 Score = 45.4 bits (106), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 66/130 (50%), Gaps = 12/130 (9%)

Query: 257 YEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQSLKKGKKFIQLAEEQ----GKSL 307
           Y+   +++ +PE   V  ++        + +A++  + LK G  F QLA+E+    G   
Sbjct: 83  YKAKPDRFQAPEQVQVRHILIAGTDGGARAQAEKVLEELKAGADFAQLAKERSADTGSGA 142

Query: 308 SDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
               LG F++   +P+    ++ F+L + GD + ++   FG+ I  +   +P+    ++E
Sbjct: 143 KGGDLGLFARGRMVPEFD--EAAFALKQPGDLSGIVETKFGFHILKLDARRPAGLRPYEE 200

Query: 367 VKKDIANQMR 376
           V++++  ++R
Sbjct: 201 VREELIKEVR 210


>gi|86153246|ref|ZP_01071450.1| foldase protein PrsA [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|121612905|ref|YP_001000297.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005249|ref|ZP_02271007.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|143955293|sp|A1VYV6|CBF2_CAMJJ RecName: Full=Cell-binding factor 2; AltName: Full=Major antigen
           peb4A; Flags: Precursor
 gi|85842972|gb|EAQ60183.1| foldase protein PrsA [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87250443|gb|EAQ73401.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 273

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%)

Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291
           IL +V++++    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK 
Sbjct: 97  ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156

Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            KGK    KF +LA+E+    G       LG F +  +      D+ F+L      T  +
Sbjct: 157 LKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 215

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +FGY +    N +    + F EVK+ I N ++
Sbjct: 216 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 249


>gi|283956008|ref|ZP_06373497.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792484|gb|EFC31264.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 273

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 13/154 (8%)

Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291
           IL +V++ +    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK 
Sbjct: 97  ILVNVYQDKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156

Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            KGK    KF +LA+E+    G       LG F +  +      D+ F+L      T  I
Sbjct: 157 LKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPI 215

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +FGY +    N +    + F EVK+ I N ++
Sbjct: 216 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 249


>gi|153951254|ref|YP_001398165.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938700|gb|ABS43441.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 273

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%)

Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291
           IL +V++++    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK 
Sbjct: 97  ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156

Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            KGK    KF +LA+E+    G       LG F +  +      D+ F+L      T  +
Sbjct: 157 LKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 215

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +FGY +    N +    + F EVK+ I N ++
Sbjct: 216 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 249


>gi|332981378|ref|YP_004462819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mahella
           australiensis 50-1 BON]
 gi|332699056|gb|AEE95997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mahella
           australiensis 50-1 BON]
          Length = 350

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 23/162 (14%)

Query: 246 IEISNDELQAEYEKNKEKYFS-PEIRTVEQLVF--PNQK-----------------EADE 285
           I ++++E++  Y++NK+  F+ PE+  V  ++   P  K                 EA++
Sbjct: 168 ITVTDEEVKKYYDENKDTEFTDPEMVKVSHILISIPEDKYSADETTKKTEYDKIKPEAEQ 227

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
                K G  F +L ++          G   +FS+E   + +  ++ F+L  KGD + ++
Sbjct: 228 VLAKAKAGDDFAELVKQYSDDAGTKDQGGTLTFSREDQIEPAFIEASFALKNKGDISGLV 287

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             S+GY I  +    PS   +F+E K++I + +   K ++K+
Sbjct: 288 QTSYGYHIIRLEEKIPSKVHTFEEKKQEIHDTLLQQKKNDKI 329


>gi|157414878|ref|YP_001482134.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385842|gb|ABV52157.1| cell binding factor2 (major antigen PEB4A) [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|307747515|gb|ADN90785.1| Cell-binding factor 2 [Campylobacter jejuni subsp. jejuni M1]
          Length = 273

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%)

Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291
           IL +V++++    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK 
Sbjct: 97  ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156

Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            KGK    KF +LA+E+    G       LG F +  +      D+ F+L      T  +
Sbjct: 157 SKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 215

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +FGY +    N +    + F EVK+ I N ++
Sbjct: 216 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 249


>gi|268679964|ref|YP_003304395.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617995|gb|ACZ12360.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 270

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 12/144 (8%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQL 299
           +++   E++  Y+KN +K+  P       ++  +++EA  A + L      K   KF++L
Sbjct: 108 VKVDAKEVKDYYDKNADKFMQPATVKARHILVKSEEEAKAAIKELSGLSGQKLNDKFVEL 167

Query: 300 AEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSN 355
           A  +    S      LG F+   +     AD+ F+L KKG++T   +   FG+ +  V +
Sbjct: 168 ATTKSTGPSGQGGGDLGWFAANQMVK-PFADAAFAL-KKGEYTKSPVQTQFGFHVILVED 225

Query: 356 IKPSFTVSFQEVKKDIANQMRITK 379
            K +   SF+ VK  I N +++ K
Sbjct: 226 TKAAEKASFEMVKPQIENGLKMEK 249


>gi|297545519|ref|YP_003677821.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296843294|gb|ADH61810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 301

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 24/171 (14%)

Query: 233 SYILFD--VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           +Y+L +    E  K ++I+ +EL+  YE NK+++   E      ++  ++K A + +  L
Sbjct: 127 NYLLINKLFEEYTKDVKITEEELKKYYEDNKDQF---ETVKASHILVSDEKIAQDIYNRL 183

Query: 291 KKGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
            KG+ F  LA+E         QG  L + + G    E+          FSL KKG  +  
Sbjct: 184 MKGEDFATLAKEYSIDTATKDQGGDLGEFARGVMVPEF------EQVAFSL-KKGQISKP 236

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +   +GY   H+   + +   SF EVK DI   +   K ++ + E Y  LE
Sbjct: 237 VKTDYGY---HIIKSEGATLKSFDEVKGDIEAYLLNDKKNQVITEKYDALE 284


>gi|268315855|ref|YP_003289574.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
 gi|262333389|gb|ACY47186.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
          Length = 552

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 23/177 (12%)

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
           PA A      L +W  +Y                    + E    +  D L+A Y+ ++E
Sbjct: 355 PAFAQARQEALDRWLYRYVRQ-----------------QVESGAAVPEDTLRAFYKAHRE 397

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
            +  P  R V +++ P + EA    ++L     F +LA    +     + G +   ++ +
Sbjct: 398 DFRMPARRAVWEILVPTEAEAQR-IRTLLTATPFEELARHYSRRPGAAATGGYLG-FVAE 455

Query: 323 VSLA---DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             L     ++F+ A++G+    +  + GYV+  V   +P   ++F+E +  I  Q+R
Sbjct: 456 AQLGAAGKAVFA-AREGEVLGPLRIADGYVLLKVGAEQPERPMTFEEARPLIERQLR 511


>gi|148925955|ref|ZP_01809642.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|145844941|gb|EDK22045.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter
           jejuni subsp. jejuni CG8486]
          Length = 207

 Score = 45.1 bits (105), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%)

Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291
           IL +V++++    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK 
Sbjct: 31  ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 90

Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            KGK    KF +LA+E+    G       LG F +  +      D+ F+L      T  +
Sbjct: 91  LKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 149

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +FGY +    N +    + F EVK+ I N ++
Sbjct: 150 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 183


>gi|78045210|ref|YP_359073.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997325|gb|ABB16224.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 337

 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 35/176 (19%)

Query: 209 SNAVLTQWFEKYKD--NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           S   + +++EK+K+  +++ PE +++ +IL  V++        N +    +  N      
Sbjct: 155 SEQEVKEYYEKHKNEPDFQTPEQRQVRHILIAVND-------GNAQNNPHFNIN------ 201

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--------DISLGSFSKE 318
                V++     +K A+E  + +K GK F  LA+E+               S G   KE
Sbjct: 202 -----VKRTDAEAKKLAEELIKQIKAGKDFATLAKEKSDDPGVKENGGQYTFSRGEMVKE 256

Query: 319 YIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           +       D+ F+L K GD T   +  +FGY I  +  I P+   +++EVK+ + N
Sbjct: 257 F------EDAAFALKKPGDITETPVKTAFGYHIIKLEKIIPARQKTYEEVKEQLKN 306


>gi|289579378|ref|YP_003478005.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           italicus Ab9]
 gi|289529091|gb|ADD03443.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           italicus Ab9]
          Length = 301

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 24/171 (14%)

Query: 233 SYILFD--VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           +Y+L +    E  K ++++ +EL+  YE NK+++   E      ++  ++K A + +  L
Sbjct: 127 NYLLINKLFEEYTKDVKVTEEELKKYYEDNKDRF---ETVKASHILVSDEKIAQDIYNRL 183

Query: 291 KKGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
            KG+ F  LA+E         QG  L + + G    E+          FSL KKG+ +  
Sbjct: 184 MKGEDFSTLAKEYSIDTATKDQGGDLGEFARGVMVPEF------EQVAFSL-KKGEISKP 236

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +   +GY   H+   + +   SF EVK DI   +   K ++ + E Y  LE
Sbjct: 237 VKTDYGY---HIIKSEGATLKSFDEVKGDIEAYLLNDKKNQVITEKYDALE 284


>gi|283954124|ref|ZP_06371649.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           414]
 gi|283794403|gb|EFC33147.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           414]
          Length = 273

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%)

Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291
           IL +V++++    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK 
Sbjct: 97  ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156

Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            KGK    KF +LA+E+    G       LG F +  +      D+ F+L      T  +
Sbjct: 157 LKGKELDAKFSKLAKEKSIDPGSKNQGGELGWFDESTMVK-PFTDAAFALKNGTITTTPV 215

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +FGY +    N +    + F EVK+ I N ++
Sbjct: 216 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 249


>gi|330689730|pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein
           Cj1289 Are Two Structurally-Related Sura-Like Chaperones
           In The Human Pathogen Campylobacter Jejuni
          Length = 252

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%)

Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291
           IL +V++++    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK 
Sbjct: 76  ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 135

Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            KGK    KF +LA+E+    G       LG F +  +      D+ F+L      T  +
Sbjct: 136 LKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 194

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +FGY +    N +    + F EVK+ I N ++
Sbjct: 195 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 228


>gi|297380175|gb|ADI35062.1| Hypothetical protein HPV225_1003 [Helicobacter pylori v225d]
          Length = 517

 Score = 44.7 bits (104), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 54/273 (19%), Positives = 120/273 (43%), Gaps = 17/273 (6%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S +   VG+ K+        
Sbjct: 31  MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 89

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V  
Sbjct: 90  YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 149

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 150 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 205

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++L+   V    +     + +++E +K +++ P   +   +
Sbjct: 206 -LEQSSLSLWAKLQDKLDILILSPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 262

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            FD   ++  ++    EL+  Y KNK  Y   E
Sbjct: 263 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 291


>gi|299822144|ref|ZP_07054030.1| peptidyl-prolyl cis-trans isomerase [Listeria grayi DSM 20601]
 gi|299815673|gb|EFI82911.1| peptidyl-prolyl cis-trans isomerase [Listeria grayi DSM 20601]
          Length = 287

 Score = 44.7 bits (104), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 24/142 (16%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--- 302
           I++++ +LQ  Y     K + P+I TV  ++  ++K AD+  Q LK GKKF  LA++   
Sbjct: 120 IKVTDKKLQDYY-----KTWQPKI-TVSHILVADKKTADKVEQELKDGKKFADLAKKYST 173

Query: 303 ------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN- 355
                 +G  L     G        D +   + ++L +KGD +  +   FGY +  +   
Sbjct: 174 DTASKTKGGKLDAFGTGQM------DPAFEKAAYALKEKGDISKPVKSQFGYHVIQLDEP 227

Query: 356 -IKPSFTVSFQEVKKD-IANQM 375
             K +F     +VKKD I +QM
Sbjct: 228 AKKATFEKDKAQVKKDYIDSQM 249


>gi|291482444|dbj|BAI83519.1| hypothetical protein BSNT_00126 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 297

 Score = 44.7 bits (104), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           + I+ISN EL++ Y KNKE Y   +   +  +V  +++EA E  + LK G  F  +A E+
Sbjct: 131 RDIDISNKELESFYNKNKELYQFDDSYRIRHIVVKDEEEAREVLKELKGGSSFEAVAAER 190

Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                      D+   + + + IP   + ++      +    P I  + GY I  +    
Sbjct: 191 STDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKEDEWSQEP-IKVNNGYAIIQLKEKL 249

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384
            + T SF EVK  I  Q+ + +  +K 
Sbjct: 250 KARTFSFDEVKDQIRRQIAMDQLGDKA 276


>gi|149194720|ref|ZP_01871815.1| possible periplasmic protein [Caminibacter mediatlanticus TB-2]
 gi|149135143|gb|EDM23624.1| possible periplasmic protein [Caminibacter mediatlanticus TB-2]
          Length = 271

 Score = 44.7 bits (104), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 245 KIEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           K+++SN EL+  Y++NKEK+ +  +I  +E +     +  DE  + +KK   +       
Sbjct: 128 KLKVSNKELKNFYDQNKEKFTTFKQIEVIEYI----SQNPDE-LKHIKKNPLY------- 175

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
             S   I    F    IP ++L   +F+  K+G+FTP+I+    YV+ +++  +    + 
Sbjct: 176 NSSNIKIENRVFKYNQIP-LNLM-FLFNSTKEGEFTPIINNGNSYVMFYINKKEGKVILP 233

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
           F+++K  IANQ+   K +  +KE +  L+
Sbjct: 234 FEQIKNIIANQLMQQKRNAILKEYFNTLK 262


>gi|124516598|gb|EAY58106.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum
           rubarum]
          Length = 324

 Score = 44.7 bits (104), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 6/118 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA---DS 328
           V+ +V   Q+EA+    +L KG  F +LA+ +   + + S G   K Y P  ++    D+
Sbjct: 176 VDHIVVAKQEEAESIRDALIKGSSFARLAKLESLGM-EASSGGRMKPY-PRGTMPPPFDT 233

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +F++ K G+ TPV+   +GY +  +    P  T+SF  VK  I  ++   K  + ++E
Sbjct: 234 VFTM-KPGEITPVLSSPYGYHLFRLEKFIPEHTLSFSMVKNWIKKKLTRVKRQKVLQE 290


>gi|16804258|ref|NP_465743.1| hypothetical protein lmo2219 [Listeria monocytogenes EGD-e]
 gi|224500981|ref|ZP_03669288.1| hypothetical protein LmonFR_00430 [Listeria monocytogenes FSL
           R2-561]
 gi|46396978|sp|Q8Y557|PRSA2_LISMO RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|16411689|emb|CAD00297.1| lmo2219 [Listeria monocytogenes EGD-e]
          Length = 293

 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 21/199 (10%)

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
           N +     D  +AVLTQ     K ++++    ++ Y L      E   + S+  L+  YE
Sbjct: 78  NEYKSQYGDQFSAVLTQSGLTEK-SFKS----QLKYNLLVQKATEANTDTSDKTLKKYYE 132

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
                 + P+I TV  ++  ++ +A E  Q LK G+KF  LA+E     +    G     
Sbjct: 133 T-----WQPDI-TVSHILVADENKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGQLAP 186

Query: 319 YIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA--- 372
           + P   D +   + ++L  KGD +  +   +GY I  +   KP+   +F++ KK +    
Sbjct: 187 FGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTFEKDKKAVKASY 244

Query: 373 --NQMRITKASEKVKEDYK 389
             +Q+      + +K++YK
Sbjct: 245 LESQLTTENMQKTLKKEYK 263


>gi|326318802|ref|YP_004236474.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375638|gb|ADX47907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 299

 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 257 YEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGKKFIQLAEEQ----GKSL 307
           Y+   E++  PE   V  ++       ++ + ++  Q LK G  F QLA+E+    G + 
Sbjct: 130 YKAKPERFKVPEQVQVRHILIAGTGADSRAQIEKIEQELKGGADFAQLAKERSADKGSAA 189

Query: 308 SDISLGSF-SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
               LG F + + +P+   A   F+L K G  + ++   FGY I  +     + T SF E
Sbjct: 190 KGGDLGFFEAGKMVPEFDKA--AFALTKPGQLSGIVESKFGYHILQLEGRHAARTRSFDE 247

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEE 393
           V+ ++  ++R     E    D + L++
Sbjct: 248 VRSELMQEVRANVQQEARVADAQALQQ 274


>gi|311070719|ref|YP_003975642.1| hypothetical protein BATR1942_18970 [Bacillus atrophaeus 1942]
 gi|310871236|gb|ADP34711.1| hypothetical protein BATR1942_18970 [Bacillus atrophaeus 1942]
          Length = 306

 Score = 44.3 bits (103), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           K I+IS  E+++ Y KNKE Y   +   +  +V  +Q+EA+   + LK G  F  +A E+
Sbjct: 141 KDIDISEKEMKSFYTKNKELYQFDDSYRIRHIVVKDQEEANRVLKDLKGGSSFEAVAAER 200

Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                      D+   + +++ IP   + ++  +L +    T  I  S GY I  +    
Sbjct: 201 STDRYTSPYGGDLGFVTEAQDSIPAAYITEA-RTLKENEWSTEPIKVSKGYAIIQLKEKL 259

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384
            + T ++ EVK  I  Q+ + +  +K 
Sbjct: 260 NARTFTYDEVKDQIKRQIAMDQLGDKA 286


>gi|296329574|ref|ZP_06872060.1| hypothetical protein BSU6633_00635 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672771|ref|YP_003864442.1| putative secretion protein [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296153317|gb|EFG94180.1| hypothetical protein BSU6633_00635 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411014|gb|ADM36132.1| putative secretion protein [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 297

 Score = 44.3 bits (103), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           + I+ISN EL++ Y KNKE Y   +   +  +V  +++EA E  + LK G  F  +A E+
Sbjct: 131 RDIDISNKELKSFYNKNKELYQFDDSYRIRHIVVKDEEEAREVLKELKGGSSFEAVAAER 190

Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                      D+   + + + IP   + ++      +    P I  S GY +  +    
Sbjct: 191 STDRYTSPYGGDLGFVTEASDNIPSAYIEEAQTLKEDEWSDEP-IKVSNGYAVIQLKEKL 249

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384
            + T S+ EVK  I  Q+ + +  +K 
Sbjct: 250 KARTFSYDEVKDQIRRQIAMDQLGDKA 276


>gi|304440474|ref|ZP_07400362.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371040|gb|EFM24658.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 370

 Score = 44.3 bits (103), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 26/156 (16%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ-- 303
           ++IS ++ +A YEK+K+KYF   +   + ++   + EA    + +++GK F +LA+E+  
Sbjct: 160 LKISEEDAKAIYEKDKDKYF---VADADHILVETEDEAKSIKKEIEEGKDFNELAKEKSK 216

Query: 304 -------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
                  G  L + S G   KE+       D++  + K+G+ +  +   FGY +  ++++
Sbjct: 217 DPTAKDNGGKLGEFSTGQMVKEF------EDAVVKM-KEGEISDPVKTQFGYHLIKLNSL 269

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +      F EVK    +Q+  T  SEK+ E   +LE
Sbjct: 270 RHK---EFDEVK----DQIIETGTSEKLTEYLNKLE 298


>gi|27904901|ref|NP_778027.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46396883|sp|Q89A98|PPID_BUCBP RecName: Full=Putative peptidyl-prolyl cis-trans isomerase D;
           Short=PPIase D; AltName: Full=Rotamase D
 gi|27904299|gb|AAO27132.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 511

 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 77/155 (49%), Gaps = 13/155 (8%)

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
           L N++  + L Q++  +    D+  V   I +  +F  ++ KF+ + +   L +  I+  
Sbjct: 91  LSNIIYESLLQQYVHQLHFNIDYSHVKNYIYKQTIF-RQNQKFNKEKYYEYLKKLQISSN 149

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK----RFYFENRSVD--YIVLNNRHVP 203
           EYI    K+++  + +  F+  +  ++ +L+  K    + + + R V+  Y+ LNN  + 
Sbjct: 150 EYIK---KVMTYLE-IKEFIKTLTNTDFILNNEKNNILKLFEQGRIVNKSYVNLNN--LK 203

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            I   SN  L +++  +K  + +P+  +ISY L +
Sbjct: 204 LIEHISNKELKRYYINHKHQFLSPKKFKISYFLIN 238


>gi|310817118|ref|YP_003965082.1| PPIc-type PPIase domain protein [Ketogulonicigenium vulgare Y25]
 gi|308755853|gb|ADO43782.1| PPIc-type PPIase domain protein [Ketogulonicigenium vulgare Y25]
          Length = 297

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 8/136 (5%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE----Q 303
           ++++ LQA Y++  +        +   ++   Q+EAD     L  G+ F  +A+E     
Sbjct: 124 VTDETLQAAYDRAFDGVTPGNEYSAAHILVATQEEADAVIARLNAGEDFATVAQELSLDT 183

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF---TPVIHGSFGYVIAHVSNIKPSF 360
           G   +   LG F+ E + +   A+++  L + G F   +  I   FG+ I  V   +P  
Sbjct: 184 GSGAAGGELGWFAPEMMVE-PFANAVVELGEAGQFDTLSAPIESQFGFHIITVHEARPQS 242

Query: 361 TVSFQEVKKDIANQMR 376
             +  E++ ++  Q+R
Sbjct: 243 LPTIAEIRTELEGQVR 258


>gi|109947212|ref|YP_664440.1| hypothetical protein Hac_0634 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714433|emb|CAJ99441.1| conserved hypothetical secreted protein [Helicobacter acinonychis
           str. Sheeba]
          Length = 487

 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 136/309 (44%), Gaps = 28/309 (9%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+E ++   +  V  I++  + F+   + G     FS+  S++   VG+  +        
Sbjct: 1   MIEWMQNHRKYLVVTIWISAIAFIAAGMIGWGQYSFSLD-SNSAAKVGKINISQEELAQE 59

Query: 60  WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     ++ I     +  E+ R++ L+K  L+ L++ A L     D+GL A    +  
Sbjct: 60  YRRLKDAYAESIPNFKELTEEQIRAMHLEKSALNILINQALLRNLALDLGLGATKQEIAK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P   
Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQNNYRPKLFEESVERLLILQKISTLFPKTTTP--- 175

Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L+Q+    +      +D ++L    V    +     + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILKPSDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV---FPNQKEADEAF 287
            FD + ++  ++    EL+  Y KNK  Y   E      ++V++ V      QK  ++A 
Sbjct: 233 YFDANLEKSDLK----ELEEYYNKNKASYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 288 QS---LKKG 293
           +S   LKKG
Sbjct: 289 RSYIALKKG 297


>gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isomerase [Herbaspirillum seropedicae
           SmR1]
 gi|300074343|gb|ADJ63742.1| peptidyl-prolyl cis-trans isomerase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 19/146 (13%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF-QSLKKGKKFIQLAEE 302
           KK  +S+ +++AEY+K K +    E      LV  ++KE  EA    LK G KF  LA++
Sbjct: 107 KKNPVSDADIKAEYDKFKAQAGDKEYHARHILV--DKKEDAEAIIAKLKAGTKFEDLAKQ 164

Query: 303 --------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHV 353
                    G  L   +  SF K +      +D++ +L KKG+ TP  +   FG+ +  +
Sbjct: 165 SKDTGSAANGGDLDWATPASFVKPF------SDAMVAL-KKGEVTPTPVQTQFGWHVIKL 217

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITK 379
            +++P+   +  EVK  IA  ++  K
Sbjct: 218 EDVRPAKVPTLDEVKPQIAEALQQKK 243


>gi|297521372|ref|ZP_06939758.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           OP50]
          Length = 160

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 65/148 (43%), Gaps = 6/148 (4%)

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADP 208
           D Y + L         + G+  ++ +L    D+      + R V    ++   + A    
Sbjct: 15  DQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPV 74

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +   +  ++E+ K+N+  PE  R+SYI  D    ++   +S+ ++Q+ Y+++++++  P+
Sbjct: 75  TEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQP--VSDADIQSYYDQHQDQFTQPQ 132

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                 +    + EA      L KG  F
Sbjct: 133 RTRYSIIQTKTEDEAKAVLDELNKGGDF 160


>gi|282882218|ref|ZP_06290857.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B]
 gi|281297983|gb|EFA90440.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B]
          Length = 375

 Score = 43.9 bits (102), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 76/141 (53%), Gaps = 12/141 (8%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
             EK K I++++D+++  Y+++K+ +F  +      ++  + K+A+E  + + KG KF +
Sbjct: 159 TQEKNKNIKVTDDDVKKYYDEHKDDFFKAK---ASHILVDDLKKANEIKKEIDKGAKFEE 215

Query: 299 LAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +A+++ K     +    LG F+   +   S  D+I  + +KG+ +  I   FG+ I  + 
Sbjct: 216 MAKKESKDTGSATNGGDLGEFTNGQMVQ-SFNDAIKKM-EKGEISDPIKSDFGFHIIKLK 273

Query: 355 NIKPSFTVSFQEVKKDIANQM 375
             KP    +F EVK +I +++
Sbjct: 274 ERKPR---TFDEVKDEIKSKL 291


>gi|30249389|ref|NP_841459.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
 gi|30138752|emb|CAD85329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
          Length = 264

 Score = 43.9 bits (102), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           +S+ EL+ EYE  K +    E +    ++   ++EA +   +LKKG  F +LA E+    
Sbjct: 116 VSDSELRKEYESVKAQMGDKEYKA-RHILVETEQEAKDLVAALKKGSAFDKLAGERSIDT 174

Query: 308 SDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              S G    +S   +     AD++  L K    +  +   FG+ +  + +++ +   SF
Sbjct: 175 GSKSNGGELGWSSAAVYVKPFADALIRLKKGETTSQPVQSPFGWHVIRLDDVRTAVPPSF 234

Query: 365 QEVKKDIANQMRI 377
           +EVK+++  Q R+
Sbjct: 235 EEVKQNM--QQRV 245


>gi|167036601|ref|YP_001664179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039253|ref|YP_001662238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X514]
 gi|300913893|ref|ZP_07131210.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X561]
 gi|307725422|ref|YP_003905173.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X513]
 gi|320115028|ref|YP_004185187.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166853493|gb|ABY91902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X514]
 gi|166855435|gb|ABY93843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300890578|gb|EFK85723.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X561]
 gi|307582483|gb|ADN55882.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X513]
 gi|319928119|gb|ADV78804.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 301

 Score = 43.9 bits (102), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 28/168 (16%)

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           LFD  E  K ++++ +EL+  YE N+E++   E      ++  ++K A++ +  L KG+ 
Sbjct: 134 LFD--EYTKDVKVTEEELKKYYEDNEEQF---ETVKASHILVVDEKTAEDIYNRLMKGED 188

Query: 296 FIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           F  LA+E         QG  L +   G    E+         +FSL KKG+ +  +   +
Sbjct: 189 FATLAKEYSVDTATKDQGGDLGEFPHGVMVPEF------DQVVFSL-KKGEISKPVKTDY 241

Query: 347 GYVIAHVSN--IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY I       IKP     F EVK  I + +   K ++ + E Y  LE
Sbjct: 242 GYHIIKSDGVIIKP-----FDEVKDTIESYLLDDKKNQVIIEKYDALE 284


>gi|47097568|ref|ZP_00235100.1| protein export protein [Listeria monocytogenes str. 1/2a F6854]
 gi|224498964|ref|ZP_03667313.1| hypothetical protein LmonF1_04383 [Listeria monocytogenes Finland
           1988]
 gi|254826892|ref|ZP_05231579.1| export protein [Listeria monocytogenes FSL N3-165]
 gi|254831344|ref|ZP_05235999.1| hypothetical protein Lmon1_08297 [Listeria monocytogenes 10403S]
 gi|254899079|ref|ZP_05259003.1| hypothetical protein LmonJ_04684 [Listeria monocytogenes J0161]
 gi|254912780|ref|ZP_05262792.1| protein export protein [Listeria monocytogenes J2818]
 gi|254937107|ref|ZP_05268804.1| export protein [Listeria monocytogenes F6900]
 gi|255025820|ref|ZP_05297806.1| hypothetical protein LmonocytFSL_04835 [Listeria monocytogenes FSL
           J2-003]
 gi|284802666|ref|YP_003414531.1| hypothetical protein LM5578_2422 [Listeria monocytogenes 08-5578]
 gi|284995808|ref|YP_003417576.1| hypothetical protein LM5923_2373 [Listeria monocytogenes 08-5923]
 gi|47014054|gb|EAL05055.1| protein export protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258599272|gb|EEW12597.1| export protein [Listeria monocytogenes FSL N3-165]
 gi|258609709|gb|EEW22317.1| export protein [Listeria monocytogenes F6900]
 gi|284058228|gb|ADB69169.1| hypothetical protein LM5578_2422 [Listeria monocytogenes 08-5578]
 gi|284061275|gb|ADB72214.1| hypothetical protein LM5923_2373 [Listeria monocytogenes 08-5923]
 gi|293590774|gb|EFF99108.1| protein export protein [Listeria monocytogenes J2818]
          Length = 293

 Score = 43.9 bits (102), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 16/167 (9%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           ++ Y L      E   + S+  L+  YE      + P+I TV  ++  ++ +A E  Q L
Sbjct: 105 QLKYNLLVQKATEANTDTSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKL 158

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347
           K G+KF  LA+E     +    G     + P   D +   + ++L  KGD +  +   +G
Sbjct: 159 KDGEKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 218

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-----NQMRITKASEKVKEDYK 389
           Y I  +   KP+   +F++ KK +      +Q+      + +K++YK
Sbjct: 219 YHIIQMD--KPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263


>gi|20808913|ref|NP_624084.1| parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter
           tengcongensis MB4]
 gi|46396955|sp|Q8R760|PRSA_THETN RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|20517573|gb|AAM25688.1| Parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 306

 Score = 43.9 bits (102), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 28/171 (16%)

Query: 234 YILFD--VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           Y+L D  + E  K ++++++EL+  Y+++KE +   E+     ++  ++K A++ +Q L 
Sbjct: 133 YLLIDKLLAEYTKDVKVTDEELKKYYDEHKESF---EVMRARHILVADEKTAEDIYQRLM 189

Query: 292 KGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
           KG+ F  LA+E          G  L +   G    E+       ++ FSL K G+ +  +
Sbjct: 190 KGEDFAALAKEYSIDTATKDNGGDLGEFPHGVMVPEF------EEAAFSL-KLGEISKPV 242

Query: 343 HGSFGYVIAHVSNI--KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              +GY I     I  KP     F EVK  I + +   K ++ +KE Y  L
Sbjct: 243 KTQYGYHIIKSEGITVKP-----FDEVKGTIESYLLNDKKNKVIKEKYDEL 288


>gi|291297351|ref|YP_003508749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber
           DSM 1279]
 gi|290472310|gb|ADD29729.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber
           DSM 1279]
          Length = 620

 Score = 43.9 bits (102), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 27/184 (14%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFI 297
           V E +KK E + +E++  +E N+++Y + E     Q+V  ++  AD+ +  +   G  F 
Sbjct: 151 VEEIQKKAEPTEEEMRLYFELNRDQYKNEERVQARQIVVDDKTTADKIYAEVTAPGADFA 210

Query: 298 QLAE-------EQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            +A+       EQG +L   +     G  ++   P+ ++A+++F L + G  +  I    
Sbjct: 211 AIAKANSKLNAEQGGALGAQAGQSEPGPVTRVVFPN-AVAEAVFKL-RDGQISKPIEAGG 268

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
            + I  V    P+  V F+EVK             ++VKED KR++   AL   ++E+  
Sbjct: 269 RFYIVKVEKYLPAGDVKFEEVK-------------DRVKEDAKRIKGQGALEAYIEELRA 315

Query: 407 REKI 410
           +  +
Sbjct: 316 KANV 319


>gi|34498008|ref|NP_902223.1| peptidyl-prolyl cis-trans isomerase [Chromobacterium violaceum ATCC
           12472]
 gi|34103863|gb|AAQ60223.1| probable peptidyl-prolyl cis-trans isomerase [Chromobacterium
           violaceum ATCC 12472]
          Length = 612

 Score = 43.9 bits (102), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 89/446 (19%), Positives = 182/446 (40%), Gaps = 31/446 (6%)

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
           L+NL+    L     D G      ++   IA  P F  ++ +FS   +   L     N +
Sbjct: 71  LENLIRQELLLAEARDHGAAVSPDQLRKAIASIPAFQ-ENGQFSAQRYSEFLKSRYPNPE 129

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
            +    ++ +     +    G    SN ++ +      E R +  +VL      +     
Sbjct: 130 AFEADISRDILLQSQLSSVAGTQFVSNTVVTRVAGLLGEGRELQPLVLKPSDFASEVKTD 189

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
            A +  +++     +  PE  ++ Y++       + I++S+ E+Q  Y+++K      + 
Sbjct: 190 AAAIKAYYDANAKRFSLPEQVKLDYVVLSQDALAQGIKVSDAEVQKYYDQHKADLAGEQR 249

Query: 270 R------TVEQLVFPNQK-----EADEAFQSLK-KGKKFIQLA----EEQGKSLSDISLG 313
           R      TV +   P QK     EA+   + ++    KF +LA    ++ G +     LG
Sbjct: 250 RASHILLTVAKDAKPEQKAKVKAEAEAILKEVRVNPAKFAELAKAKSQDPGSAEKGGDLG 309

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
            F    +      D++F + K G  + ++   +G+ I  +  +K   + S  +VK  + +
Sbjct: 310 FFGHGMMVK-PFDDAVFKM-KPGQISDLVETEYGFHIIRLDAVK---SQSLDDVKGAVVD 364

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
           +++  KA+    E   +L E        D +      + +++   D+  ++   ++   +
Sbjct: 365 KLQKQKAAALFHEQAGKLNEIAY--QQADSLKGVVDALKLEVKHSDWVRRNQPSQD--EL 420

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPD--GSYMWV-QIKESIPARDRKLEEVLTDVKKDW 490
               +LL  VF  DD L K H   + D  G+ + V +I E  P R + L +V   ++K+ 
Sbjct: 421 LGNAKLLSAVF-SDDVLKKKHNSEVVDIGGNRLVVARIAEHQPERQQPLADVTDAIRKEL 479

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKN 516
              +   +++ K  Q +L   K GK 
Sbjct: 480 -VERDGAKLADKKGQALLAELKAGKG 504


>gi|226940618|ref|YP_002795692.1| signal peptide protein [Laribacter hongkongensis HLHK9]
 gi|226715545|gb|ACO74683.1| Probable signal peptide protein [Laribacter hongkongensis HLHK9]
          Length = 263

 Score = 43.5 bits (101), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 12/153 (7%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           K+  +S+ +++AEY+K K      +     Q++  ++ EA+     LKKG  F  +A+++
Sbjct: 110 KQNPVSDAQVRAEYDKLKSALSGQKEVQARQIIVGSEAEANAVIAQLKKGGNFEAIAKQK 169

Query: 304 GKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS-FGYVIAHVSNI 356
            K  +      D+  G+      P   LAD++  L  KG +T     S  G+ I  V N+
Sbjct: 170 SKDPAAKQNGGDMGWGNLGVMAKP---LADTLKPLG-KGQYTQQPFKSDLGWHIFKVENV 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           + +    F EVK  ++ QM+   A EK   D +
Sbjct: 226 RDAKVPQFDEVKPQLSRQMQ-GAAVEKALNDLR 257


>gi|114331519|ref|YP_747741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
 gi|114308533|gb|ABI59776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
          Length = 264

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           +S+DEL+ EYE  K +    E +    ++   ++EA +   SLKKG  F +LA E+    
Sbjct: 116 VSDDELRKEYESVKSQMGDKEYK-ARHILVETEQEAKDLVASLKKGGVFEKLAGERSIDT 174

Query: 308 SDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              S G    +S   +     +D++  L K    +  +   FG+ +  + +++ +   SF
Sbjct: 175 GSKSNGGELGWSSAAVYVKPFSDALTKLKKGETTSQPVQTPFGWHVIRLDDVRTAVPPSF 234

Query: 365 QEVKKDIANQMRI 377
            EVK+++  Q R+
Sbjct: 235 DEVKQNM--QQRV 245


>gi|322418543|ref|YP_004197766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320124930|gb|ADW12490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 335

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 20/144 (13%)

Query: 245 KIEISNDELQAEYEKNKEKYFS-PE--------IRTVEQLVFPNQKEADEAFQSL----K 291
           K+E+++ E Q  Y++N+EKYF+ PE        ++  ++L    +++A E  ++L    K
Sbjct: 166 KVEVTDAEAQKFYQENQEKYFTRPENARASHILVKVDDKLTAEQKQQAKEKAEALLKRVK 225

Query: 292 KGKKFIQLAE-EQGKSLSDIS--LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  +A+ E G   + +   LG+F + + +P    A  +F++ K G+ + V+   FG
Sbjct: 226 GGEDFAAVAKTESGCPSATVGGDLGTFGRGQMVPPFEKA--VFAM-KPGEISSVVESQFG 282

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDI 371
           + I  +     +  VS++E K  I
Sbjct: 283 FHIIKLVEKHEAGKVSYEEAKTKI 306


>gi|226224827|ref|YP_002758934.1| post-translocation molecular chaperone [Listeria monocytogenes
           Clip81459]
 gi|254825217|ref|ZP_05230218.1| rotamase [Listeria monocytogenes FSL J1-194]
 gi|254853343|ref|ZP_05242691.1| export protein [Listeria monocytogenes FSL R2-503]
 gi|254992110|ref|ZP_05274300.1| post-translocation molecular chaperone [Listeria monocytogenes FSL
           J2-064]
 gi|255520683|ref|ZP_05387920.1| post-translocation molecular chaperone [Listeria monocytogenes FSL
           J1-175]
 gi|300763971|ref|ZP_07073967.1| protein export protein [Listeria monocytogenes FSL N1-017]
 gi|225877289|emb|CAS06003.1| Putative post-translocation molecular chaperone [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606707|gb|EEW19315.1| export protein [Listeria monocytogenes FSL R2-503]
 gi|293594463|gb|EFG02224.1| rotamase [Listeria monocytogenes FSL J1-194]
 gi|300515312|gb|EFK42363.1| protein export protein [Listeria monocytogenes FSL N1-017]
          Length = 293

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 16/167 (9%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           ++ Y L      E   + S+  L+  YE      + P+I TV  ++  ++ +A E  Q L
Sbjct: 105 QLKYNLLVQKATEANTDTSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKL 158

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347
           K G KF  LA+E     +    G     + P   D +   + ++L  KGD +  +   +G
Sbjct: 159 KDGAKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 218

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-----NQMRITKASEKVKEDYK 389
           Y I  +   KP+   +F++ KK +      +Q+      + +K++YK
Sbjct: 219 YHIIQMD--KPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263


>gi|46908453|ref|YP_014842.1| protein export protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47094429|ref|ZP_00232114.1| protein export protein [Listeria monocytogenes str. 4b H7858]
 gi|254931668|ref|ZP_05265027.1| rotamase [Listeria monocytogenes HPB2262]
 gi|67461025|sp|Q71XE6|PRSA2_LISMF RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|46881724|gb|AAT05019.1| protein export protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47017195|gb|EAL08043.1| protein export protein [Listeria monocytogenes str. 4b H7858]
 gi|293583223|gb|EFF95255.1| rotamase [Listeria monocytogenes HPB2262]
 gi|328472118|gb|EGF42993.1| post-translocation molecular chaperone [Listeria monocytogenes 220]
 gi|332312671|gb|EGJ25766.1| Foldase protein prsA 1 [Listeria monocytogenes str. Scott A]
          Length = 293

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 16/167 (9%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           ++ Y L      E   + S+  L+  YE      + P+I TV  ++  ++ +A E  Q L
Sbjct: 105 QLKYNLLVQKATEANTDTSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKL 158

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347
           K G KF  LA+E     +    G     + P   D +   + ++L  KGD +  +   +G
Sbjct: 159 KDGAKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 218

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-----NQMRITKASEKVKEDYK 389
           Y I  +   KP+   +F++ KK +      +Q+      + +K++YK
Sbjct: 219 YHIIQMD--KPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263


>gi|208779446|ref|ZP_03246792.1| numod1 domain family protein [Francisella novicida FTG]
 gi|208745246|gb|EDZ91544.1| numod1 domain family protein [Francisella novicida FTG]
          Length = 477

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 24/228 (10%)

Query: 97  ATLDQFIEDIGLEADHGR---------VWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGI 146
           A L Q I+   + AD  R         +   I  + +F  KD KFS +     +A   G+
Sbjct: 72  AILSQMIDQYLILADAQRHDIVVSKLALQSAIFTNSMFFDKDGKFSAEKLKQVVAYLGGM 131

Query: 147 NEKEYI---DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
           ++ E I   +    ++ +T +V  F+     + LL       Y  N+ +DY+ ++     
Sbjct: 132 DKLEQILAQNIQATIIPKT-IVDTFIVTDYDTKLL----NSIYSVNKYIDYLKVSPADFK 186

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE- 262
           +   PS   L  +++ +K+ Y  P  K ISY +        K +IS DE++A Y+ +KE 
Sbjct: 187 SQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKDNFVPKNKISEDEIKAYYQAHKEL 246

Query: 263 -KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKS 306
            K F    ++  Q +  N + A E F    +     K+ +L ++ GK+
Sbjct: 247 FKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIKYTKLEKQFGKA 293


>gi|257094858|ref|YP_003168499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047382|gb|ACV36570.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 269

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 17/152 (11%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           YI   V +  KK  IS+++ +A YE+ K +  S E + V  ++   + +A     +LKKG
Sbjct: 108 YIRAFVQDYVKKNPISDEQAKAAYERMKSQMGSTEYK-VRHILVEKEDDAKTIIVNLKKG 166

Query: 294 KKFIQLAE--------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHG 344
            KF +LA+        E+G  L   S  ++ K +       D++  LAK G FT   +  
Sbjct: 167 AKFDELAKQSKDPGSKEKGGDLGWSSTANYVKPF------GDAVAGLAK-GKFTETPVKT 219

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
            FGY +  V + +P     F ++K  I  +++
Sbjct: 220 DFGYHVILVEDSRPLTPPPFDQIKPQINQRLQ 251


>gi|325265502|ref|ZP_08132223.1| PPIC-type PPIASE domain protein [Clostridium sp. D5]
 gi|324029250|gb|EGB90544.1| PPIC-type PPIASE domain protein [Clostridium sp. D5]
          Length = 246

 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 20/156 (12%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA--- 300
           K I +S+DE  A YE NK+++   E+ + + ++  ++++     +S+  G K  + A   
Sbjct: 90  KDITVSDDEASAYYEANKQQFSKGEMVSAKHILTDSEEKCSAVLESITNGDKSFEDAARE 149

Query: 301 ------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
                  E G  L     G   KE+       D+ F+ A+ G     +   FGY +  V 
Sbjct: 150 SSMCPSSENGGDLGKFGRGQMVKEF------EDAAFA-AEPGHVVGPVQSQFGYHLIKVE 202

Query: 355 NIKPSFTVSFQEV----KKDIANQMRITKASEKVKE 386
             + + T    EV    K ++  QM+ +  SE +KE
Sbjct: 203 EKEEAATAPLNEVIESIKMNMLQQMQSSAYSEMIKE 238


>gi|32490901|ref|NP_871155.1| hypothetical protein WGLp152 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166107|dbj|BAC24298.1| ppiD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 628

 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 84/164 (51%), Gaps = 11/164 (6%)

Query: 224 YRAPEYKRISYILFDVHEKEKKIEI--SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           Y  P+   I+Y+  ++++ + K +I   + E+Q  Y KN +K+  PE +    + F ++K
Sbjct: 222 YVTPKKFNINYLKININDIKNKDKIIAKSKEVQEWYLKNIKKFTLPEKKRYSIIQFDSEK 281

Query: 282 EADEAFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEY-IPDVSLADSIFSLAKKG 336
           EA      +K  K F ++A+ + K    S+++  +G   +++ I ++ +A+    L  K 
Sbjct: 282 EAIFYLNKIKNEKDFFEIAKNKSKDIFSSVNNGDIGWIQEDFIIEEIKIAN----LKNKN 337

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           + + +I  S GY+I  ++ I P      +   K+I N ++  K+
Sbjct: 338 EISKIIKSSSGYLIIMLTEIIPKVEQDLKYFYKEIENYIKEEKS 381


>gi|238024473|ref|YP_002908705.1| hypothetical protein bglu_2g10690 [Burkholderia glumae BGR1]
 gi|237879138|gb|ACR31470.1| Hypothetical protein bglu_2g10690 [Burkholderia glumae BGR1]
          Length = 278

 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 39/183 (21%)

Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
           PS A ++ ++ K+K +Y       +S+IL                   ++EK+     + 
Sbjct: 120 PSEAEISAYYNKHKSDYN---LYSLSHILV------------------KFEKDPSNLPAE 158

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---- 323
           + + +E   F N+ +A EA   LK G  F +LA +    LSD +        +P+     
Sbjct: 159 QAKKIEAQAF-NKAQAIEA--RLKAGADFHELAAQ----LSDDANSRIDGGRVPETMARF 211

Query: 324 ---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
              +    I + AK+GD TP +  SFGY I  V  + PS        + D+ N +R  K 
Sbjct: 212 LAPAFKPEILA-AKQGDITPPLKSSFGYHIIMVEGVVPS---DMARNRADVINDIREGKL 267

Query: 381 SEK 383
           +EK
Sbjct: 268 AEK 270


>gi|152993388|ref|YP_001359109.1| peptidyl-prolyl cis-trans isomerase [Sulfurovum sp. NBC37-1]
 gi|151425249|dbj|BAF72752.1| peptidyl-prolyl cis-trans isomerase [Sulfurovum sp. NBC37-1]
          Length = 282

 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 16/159 (10%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQL 299
           I IS+ E +  YEKNK+K+   E+     ++  ++K A E  + LK  KG    KKFI+L
Sbjct: 111 IVISDSEAKDFYEKNKDKFIQKEMVQARHILVKDEKTAKEIIKELKPLKGEALKKKFIEL 170

Query: 300 AEEQGKSLSDIS-----LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           A  + KS+   +     LG F+K + +P+ S A  ++ L K       +   FGY I  +
Sbjct: 171 A--KSKSIGPSAPKGGELGKFAKGQMVPEFSKA--VWKLEKDQITLEPVKTQFGYHIILL 226

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +   + TV + +VK  I   ++  + ++KV    K L+
Sbjct: 227 EDKIEAQTVPYDKVKDQIIASLKQQEFAKKVAAIAKELK 265


>gi|328465802|gb|EGF36990.1| protein export protein [Listeria monocytogenes 1816]
          Length = 266

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 11/144 (7%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           ++ Y L      E   + S+  L+  YE      + P+I TV  ++  ++ +A E  Q L
Sbjct: 105 QLKYNLLVQKATEANTDTSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKL 158

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347
           K G KF  LA+E     +    G     + P   D +   + ++L  KGD +  +   +G
Sbjct: 159 KDGAKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 218

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDI 371
           Y I  +   KP+   +F++ KK +
Sbjct: 219 YHIIQMD--KPATKTTFEKDKKAV 240


>gi|197123566|ref|YP_002135517.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
 gi|196173415|gb|ACG74388.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
          Length = 590

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 14/139 (10%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL---AEE 302
           + + +D+L+A Y+ +++++ +  +  ++QL FP+ K A  A + L +G  F  L   AE 
Sbjct: 426 VSLKDDDLRAYYDGHRDEFTAAPLYRLDQLAFPDMKGAQRATERLARGTDFKWLKANAEG 485

Query: 303 Q---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF---GYVIAHVSNI 356
           Q    +   D      S + +P+  LA ++ S A+ GD+   +H      GYV+  VS  
Sbjct: 486 QLPPAQRALDFEGQLLSAKGLPE-DLAGALAS-AQVGDYR--LHQGPRGQGYVVQVVSRT 541

Query: 357 KPSFTVSFQEVKKDIANQM 375
            P     F+E K DI  ++
Sbjct: 542 DPQVQ-PFEEAKPDIQKKL 559


>gi|213024001|ref|ZP_03338448.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 215

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 92/184 (50%), Gaps = 13/184 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q++  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P F   D KF ++ + + + + G+      D YT+ L         + G+  +
Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYTQALRNQLTTQQLINGVAGT 172

Query: 176 NLLL 179
           + +L
Sbjct: 173 DFML 176


>gi|120612784|ref|YP_972462.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
 gi|120591248|gb|ABM34688.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
          Length = 299

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 12/130 (9%)

Query: 257 YEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGKKFIQLAEEQ----GKSL 307
           Y+   E++  PE   V  ++       ++ + ++  Q LK G  F QLA+E+    G + 
Sbjct: 130 YKAKPERFKVPEQVQVRHILIAGKGADSRAQIEKIEQELKGGADFAQLAKERSADKGSAA 189

Query: 308 SDISLGSF-SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
               LG F + + +P+   A   F+L K G+ + ++   FGY I  +       T SF E
Sbjct: 190 KGGDLGFFEAGKMVPEFDKA--AFALTKPGELSGIVESKFGYHILQLEGRHAPRTRSFDE 247

Query: 367 VKKDIANQMR 376
           V+ ++  ++R
Sbjct: 248 VRSELMQEVR 257


>gi|89256253|ref|YP_513615.1| hypothetical protein FTL_0896 [Francisella tularensis subsp.
           holarctica LVS]
 gi|254367592|ref|ZP_04983613.1| hypothetical protein FTHG_00855 [Francisella tularensis subsp.
           holarctica 257]
 gi|89144084|emb|CAJ79335.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253403|gb|EBA52497.1| hypothetical protein FTHG_00855 [Francisella tularensis subsp.
           holarctica 257]
          Length = 476

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 109/271 (40%), Gaps = 51/271 (18%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQEL 64
           K   TW+  I +  +FV   I G++   F+  GSS   V  VG  ++    F        
Sbjct: 10  KGPFTWIVVISISFIFV---ISGMT-FFFTNIGSSRAYVAKVGDNEISSQQF-------- 57

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR---------V 115
               Q +      E+ R++               L Q I+   + AD  R         +
Sbjct: 58  ---QQYVQSATTEEQKRAI---------------LSQMIDQYLILADAQRHDIVVSKLAL 99

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I  +P+F  KD KFS +     +A  G      +D   ++L++     +    +  +
Sbjct: 100 QSAIFTNPMFFDKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDT 154

Query: 176 NLLLDQAKRF----YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
           +++ D   +     Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K 
Sbjct: 155 SIVTDYDTKLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQH-LQSYYDSHKNEYITPAQKT 213

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
           ISY +        K +IS DE++A Y+ +KE
Sbjct: 214 ISYFIITKDNFVPKNKISEDEIKAYYQAHKE 244


>gi|297622266|ref|YP_003703700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera
           radiovictrix DSM 17093]
 gi|297163446|gb|ADI13157.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera
           radiovictrix DSM 17093]
          Length = 398

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 8/147 (5%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           E ++E+ ++ + A YE N+ ++   E      ++  ++  A+     L+ G+ F +LA +
Sbjct: 188 EAEVEVGDEAVSAYYEANQAQFERSEEVCARHILVEDEATAEALLTRLEAGEDFGELARD 247

Query: 303 Q----GKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                G +     LG   +   +P+    ++ F+  + G+ T  +   FGY +  V    
Sbjct: 248 NSTDPGSAPEGGDLGCLPRGVTVPEFE--EAAFAT-EVGETTGPVRSDFGYHLIRVYERN 304

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384
           P+ T   +EV+  I  Q+R    +E++
Sbjct: 305 PAETAPLEEVRSQIEGQLRNEGLNERI 331


>gi|171914553|ref|ZP_02930023.1| hypothetical protein VspiD_25280 [Verrucomicrobium spinosum DSM
           4136]
          Length = 518

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 81/388 (20%), Positives = 148/388 (38%), Gaps = 51/388 (13%)

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
           G  +  +GFVV   +A  + +      NL+    L + +E  G++A +        + P+
Sbjct: 80  GDFASTMGFVVQKYQAEGM-IPVDFAFNLL---VLREELEKNGVQATNEEAREAFRKLPI 135

Query: 125 FHGKDNKFSHDV---FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
           F  KD  F  +V   F + +   G+ + +  D     +    +  +  G    +N +  Q
Sbjct: 136 FQNKDGNFDGNVAEQFQNNIGALGLRDTDVFDVLRDWIGFKRLHEIVAGNAVLNNNVSKQ 195

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                F+      I          A P++  + +++E+ K+ ++    + +SY+LF   +
Sbjct: 196 LYASTFQTVKAASIPFITDDFKKDAKPTDEEIAKYYEEKKEAFKTAPKRAVSYVLFAKPD 255

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
            EK        L AE        F+  +              D    ++  G K   +A+
Sbjct: 256 VEK--------LNAEDTVKARNEFAARVN-------------DFGVAAIAPGAKLEDVAK 294

Query: 302 EQGKSLSDISLGSFSKEYIPDV-----SLADSIFSLAKKGDFTPV---IHGSFGYVIAHV 353
                L    L  F+ E  P+       L   IF +  +    PV   + G+ GY    V
Sbjct: 295 TAKVELKTEPL--FTMEAPPEALKEEPGLVSEIFRIDPQN--RPVSDPVEGAKGYYFFSV 350

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASE----KVKEDYKRLEEFLALGTSMDEISRREK 409
           +  +        EVK+ +A Q+   KA E       E  K+LEE +  G + DE ++   
Sbjct: 351 TQEEEPKQQELAEVKEKVAEQLTSQKAQELMTKAASEARKKLEESIKGGKTFDEAAKEAN 410

Query: 410 IVSIDLPLVDFAGKD-----VKGKEVAA 432
           +    LP  +F+  +       G+E+AA
Sbjct: 411 LTPQQLP--EFSPSNPLMDRTNGREIAA 436


>gi|149194584|ref|ZP_01871680.1| hypothetical protein CMTB2_01034 [Caminibacter mediatlanticus TB-2]
 gi|149135328|gb|EDM23808.1| hypothetical protein CMTB2_01034 [Caminibacter mediatlanticus TB-2]
          Length = 482

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 160/379 (42%), Gaps = 39/379 (10%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           W+A I  V     F+ WG     F    +ST+  V   ++    + N++      ++Q++
Sbjct: 17  WIATIAFV--GAGFVGWG--QFQFG-KKTSTIAKVKDTEITIQDWQNAYNNLFDRVNQQL 71

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  ++   A+ +GL K+ LD  +    L Q+ +D+GL      +  +I    +F  K N 
Sbjct: 72  GGKLDEATAKKLGLQKEALDIAIQQGILRQYAKDLGLYVTDNDIAKKILE--VFKNKQN- 128

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
                + + L   G   K++ ++  K L    ++      ++P    +       +   +
Sbjct: 129 -----YENYLKNTGQKAKDFENNLRKQLLVEKLLKYL--NLKPQKTEIMTIASALYNADN 181

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISN 250
           +D  V+N  ++    D +   + +++EK K+ Y +  +YK    I+ +    E   ++S 
Sbjct: 182 LDIKVINKNNIKVDVDENE--IKKYWEKNKNKYLSQNQYK----IMIETIPLEG--DVSE 233

Query: 251 DELQAEYEKNKEKYFSP--EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           +EL+  Y +NK  Y +   EI + E+    NQ + D     LKK         +  K   
Sbjct: 234 EELKKYYNENKLNYKNEKGEILSFEKA--KNQVKIDYLAHKLKKKAIIAYKNLKNSKGNY 291

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH-VSNIKPSFTVSFQEV 367
            I   + + + IP     D +  L   G   P ++    Y+ A  +  +KP+  + F++V
Sbjct: 292 KIITVNENNKLIP----FDKMQILKNNGYLKPFVYNQ-QYITAKLIEELKPT-PLPFEKV 345

Query: 368 K----KDIANQMRITKASE 382
           K    KD  N+M   K  E
Sbjct: 346 KNIVIKDYINEMSSKKLIE 364


>gi|94310806|ref|YP_584016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
           metallidurans CH34]
 gi|93354658|gb|ABF08747.1| Peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans
           CH34]
          Length = 264

 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           S++EL+ +YEK K ++ + +   V  ++   + +A      +K G KF  +A+ Q K   
Sbjct: 110 SDEELRKQYEKIKAQFGNGKEYHVRHILVEKEADAKALIAKIKAGAKFEDVAKAQSKDTG 169

Query: 309 DISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTV 362
             + G     + S  Y+P+ S A    +  KKG  T   +   FG+ I  + + + +   
Sbjct: 170 SAANGGDLDWANSSSYVPEFSAA---MTNLKKGQMTDTPVKTQFGWHIIELVDTRDAKIP 226

Query: 363 SFQEVKKDIANQM 375
           SF+EVK  +   M
Sbjct: 227 SFEEVKPQLQQMM 239


>gi|254479750|ref|ZP_05093031.1| PPIC-type PPIASE domain protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214034310|gb|EEB75103.1| PPIC-type PPIASE domain protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 271

 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 28/171 (16%)

Query: 234 YILFD--VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           Y+L D  + E  K ++++++EL+  Y+++KE +   E+     ++  ++K A++ +Q L 
Sbjct: 98  YLLIDKLLAEYTKDVKVTDEELKKYYDEHKESF---EVMRARHILVADEKTAEDIYQRLM 154

Query: 292 KGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
           KG+ F  LA+E          G  L +   G    E+       ++ FSL K G+ +  +
Sbjct: 155 KGEDFAALAKEYSIDTATKDNGGDLGEFPHGVMVPEF------EEAAFSL-KLGEISKPV 207

Query: 343 HGSFGYVIAHVSNI--KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              +GY I     I  KP     F EVK  I + +   K ++ +KE Y  L
Sbjct: 208 KTQYGYHIIKSEGITVKP-----FDEVKGTIESYLLNDKKNKVIKEKYDEL 253


>gi|167629347|ref|YP_001679846.1| ppic-type ppiase domain protein, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592087|gb|ABZ83835.1| ppic-type ppiase domain protein, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 338

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           I+IS+ +++  Y  N +K+          ++   ++EA      L++G  F QLA ++  
Sbjct: 151 IQISDADVEKYYRDNPDKFKQNRQVKASHILLKTEEEAKAIIAELERGADFAQLAVQKST 210

Query: 306 SLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDF--TPVIHGSFGYVIAHVSNIKPS 359
             +       LG F  E +     +D+ FS+ KKG+   TPV   +FGY +  V +IK +
Sbjct: 211 DSTAAQNKGDLGYFQAEDMVK-EFSDAAFSM-KKGETSRTPV-KSNFGYHVIRVEDIKEA 267

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
               F EVK    +Q+R+   +++ +E   R E + A   +  +I R+
Sbjct: 268 RQQRFDEVK----DQIRVDLGADRKQE---RFESWFADVKAQAKIERK 308


>gi|224373789|ref|YP_002608161.1| putative periplasmic protein [Nautilia profundicola AmH]
 gi|223588950|gb|ACM92686.1| putative periplasmic protein [Nautilia profundicola AmH]
          Length = 270

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 14/150 (9%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           + K++IS DEL+  YE NK+++       V +    N+K  +E    +KK      LA  
Sbjct: 126 QTKLKISQDELKNFYENNKDQFKIFSTVQVTKYTANNKKSLNE----IKKNP----LANA 177

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
             K+ + +    +S   +P   L   +F   K G+FTP+I+    Y + +V+    S  +
Sbjct: 178 NVKTETKV----YSYNELPLGLLF--LFKQTKVGEFTPIINDGLAYSMYYVARKDGSVYI 231

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            F++VK  IAN++   K    +K+ + +L+
Sbjct: 232 PFEKVKNAIANKLAAQKREMILKDYFNKLK 261


>gi|94971251|ref|YP_593299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94553301|gb|ABF43225.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 369

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 27/143 (18%)

Query: 246 IEISNDELQAEYEKNKEKYFSPE-IRTVEQLVF------PN----QKEADEAFQSLKKGK 294
           I+I+ DE Q  Y+ +K +   PE +R  E LV       PN    Q++A+     LK GK
Sbjct: 163 IQITKDEEQKFYDAHKSEMERPEQVRLSEILVPVDAEKDPNATAAQQKAEGIIAELKAGK 222

Query: 295 KFIQL---------AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           KF  +         A+EQG  L     G  +K+      L D++F L K+G++T  I   
Sbjct: 223 KFDDVAKAESAGPTAKEQGGDLGYFKRGVLAKQ------LEDTVFPL-KEGEYTEPIRTK 275

Query: 346 FGYVIAHVSNIKPSFTVSFQEVK 368
            G+VI  V+  + S     Q+++
Sbjct: 276 QGFVIIKVTEHQQSGVPPLQQIE 298


>gi|57505869|ref|ZP_00371794.1| peptidyl-prolyl cis-trans isomerase, putative [Campylobacter
           upsaliensis RM3195]
 gi|57015899|gb|EAL52688.1| peptidyl-prolyl cis-trans isomerase, putative [Campylobacter
           upsaliensis RM3195]
          Length = 273

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           +L +V++ +  + I++   +++  YEKNKE++  P     + ++  N++EA      LK 
Sbjct: 97  LLLNVYQNKIMQDIKVDATKVKEAYEKNKEQFVKPARVKAKHILVTNEQEAKNIINELKG 156

Query: 293 ------GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV- 341
                  KKF ++A     + G + +   LG F +  +      D+ FSL KKG+ T   
Sbjct: 157 LKDKELEKKFTEIARTKSIDTGSAANGGDLGWFDESTMVK-PFTDATFSL-KKGEITKTP 214

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           +  +FGY I    + +    V+F++ K  I N+ +
Sbjct: 215 VKTNFGYHIILKQDSRAKEQVAFKDAKMGIENRFK 249


>gi|294102245|ref|YP_003554103.1| hypothetical protein Amico_1258 [Aminobacterium colombiense DSM
           12261]
 gi|293617225|gb|ADE57379.1| hypothetical protein Amico_1258 [Aminobacterium colombiense DSM
           12261]
          Length = 358

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 5/138 (3%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKEADEAFQSLKK-GKKF 296
           V +    + ++ +E+Q  Y+K K+ +FS P  R V    F N++ AD+ ++ LKK G K+
Sbjct: 160 VEQAASTVVVTPEEVQEFYDKGKDAFFSRPAGRKVVYARFSNKEAADKIYEELKKDGSKW 219

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIH-GSFGYVIAHV 353
             L EE        S+G  +  ++P+  + D   +L     G   P I   S   ++   
Sbjct: 220 DALLEEVTSEDKKESIGYEAPVFVPESGMQDKFETLKDLSVGQVAPPIEITSNDIMVVLN 279

Query: 354 SNIKPSFTVSFQEVKKDI 371
             +  + TVSF EV  DI
Sbjct: 280 KEVLEASTVSFDEVSNDI 297


>gi|291279157|ref|YP_003495992.1| hypothetical protein DEFDS_0758 [Deferribacter desulfuricans SSM1]
 gi|290753859|dbj|BAI80236.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 325

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 53/111 (47%), Gaps = 18/111 (16%)

Query: 281 KEADE-AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           KE DE A+Q   KG     +  EQ       ++  FSK Y P       IF L KKGDF 
Sbjct: 216 KEEDEKAWQKCDKG-----IYPEQD------TVYKFSKNY-P----IKEIFKL-KKGDFG 258

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
                 +GY+I  V +IKPS  + F E+K +I   M++ K  +  K   KR
Sbjct: 259 GPYRNIYGYLIVKVIDIKPSEVLPFDEIKNEIERLMKLKKFKDYYKNLLKR 309


>gi|322434836|ref|YP_004217048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX9]
 gi|321162563|gb|ADW68268.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX9]
          Length = 662

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 147/369 (39%), Gaps = 50/369 (13%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
           +  GG+  S+  +  + R        DY V+ +  + A  +PS++ L  +F+  +  Y  
Sbjct: 179 LITGGVTVSDNAVRDSYRVSGTKVKFDYAVITSDTLRATVNPSDSDLQTFFKTNQARYAT 238

Query: 227 --PEYKRISYILFDVHE-KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----- 278
             PE ++++Y  F   +    K ++++ +LQ  Y  +  +Y   +   V  ++       
Sbjct: 239 AVPESRKLNYFAFGADQIPGGKPQVTDADLQTYYNAHLAQYQVKDQAKVRHILIAVPAGA 298

Query: 279 -------NQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSK-EYIPDVSLA 326
                   + +AD+  + +K G  F  LA    ++ G   +   LG  S  + +P+   A
Sbjct: 299 DARTDAAAKAKADDLLKQIKAGGNFADLASKNSDDPGSKANGGELGFLSPGQTVPEFDKA 358

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
              FSL K G  + VI   FGY I  V   + + T    EVK +I            + E
Sbjct: 359 S--FSL-KPGQTSDVIKTKFGYHILQVEERQNAHTKPLNEVKAEIT----------PIVE 405

Query: 387 DYKRLEEFLALGTSMDEISRREKI------VSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
             K      A   S+ + +R+  I        +     DF GKD     V  +     LL
Sbjct: 406 QQKFGNAEAAYAKSLSDEARKNGIDKTAAAHGLHATTTDFVGKD---GVVPGVSDSTALL 462

Query: 441 FRVFG---KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
            + F    K DP+S    V+  DG +   Q+ +         +   + +  D++  K  +
Sbjct: 463 AQAFTTTKKGDPIS----VSTGDG-FAIFQVVDIQAPHAPTFDAYKSHILDDYRAEKVPQ 517

Query: 498 EVSSKANQL 506
            ++ K N+L
Sbjct: 518 LLNEKLNKL 526


>gi|290893167|ref|ZP_06556155.1| rotamase [Listeria monocytogenes FSL J2-071]
 gi|290557329|gb|EFD90855.1| rotamase [Listeria monocytogenes FSL J2-071]
          Length = 293

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 16/167 (9%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           ++ Y L      E   + S+  L+  YE      + P+I TV  ++  ++ +A E  Q L
Sbjct: 105 QLKYNLLVQKATEANTDTSDKVLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKL 158

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347
           K G KF  LA+E     +    G     + P   D +   + ++L  KGD +  +   +G
Sbjct: 159 KDGAKFADLAKEYSTDTATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 218

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-----NQMRITKASEKVKEDYK 389
           Y I  +   KP+   +F++ KK +      +Q+      + +K++YK
Sbjct: 219 YHIIQMD--KPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263


>gi|329767659|ref|ZP_08259179.1| hypothetical protein HMPREF0428_00876 [Gemella haemolysans M341]
 gi|328839086|gb|EGF88672.1| hypothetical protein HMPREF0428_00876 [Gemella haemolysans M341]
          Length = 312

 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 29/139 (20%)

Query: 249 SNDELQAEYEKNKEKYFSPEIR-TVEQLVFPN-------QKEADEAFQSLKKGKKFIQLA 300
           ++D+L+  YEKNK +Y    I  +V+    PN       +K+A+E  + LK G  F  LA
Sbjct: 130 NDDKLKESYEKNKHQYHLAHILVSVKSESNPNGLSDEEAKKKAEEVLKKLKDGGDFATLA 189

Query: 301 EEQGKSLSDISLG-----------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           +E     ++ S G           SF KE+       D+ ++L+ K   + V+  SFGY 
Sbjct: 190 KENSNDTANASNGGDLGWSSKEDNSFVKEF------KDAAYALS-KDKTSDVVKTSFGYH 242

Query: 350 IAHVSNIKPSFTVSFQEVK 368
           I  V + K S   SF E+K
Sbjct: 243 IIKVLDEKDS---SFDELK 258


>gi|217963619|ref|YP_002349297.1| foldase protein PrsA [Listeria monocytogenes HCC23]
 gi|217332889|gb|ACK38683.1| foldase protein PrsA [Listeria monocytogenes HCC23]
          Length = 293

 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 16/167 (9%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           ++ Y L      E   + S+  L+  YE      + P+I TV  ++  ++ +A E  Q L
Sbjct: 105 QLKYNLLVQKATEANTDTSDKVLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKL 158

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347
           K G KF  LA+E     +    G     + P   D +   + ++L  KGD +  +   +G
Sbjct: 159 KDGAKFADLAKEYSTDTATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 218

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-----NQMRITKASEKVKEDYK 389
           Y I  +   KP+   +F++ KK +      +Q+      + +K++YK
Sbjct: 219 YHIIQMD--KPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263


>gi|299143243|ref|ZP_07036323.1| foldase protein PrsA [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517728|gb|EFI41467.1| foldase protein PrsA [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 331

 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 26/164 (15%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           K+ E +++E+Q  Y+KNK+ +F  +     + TVE        EA++  + L KG  F +
Sbjct: 131 KEFEPTDEEIQKYYDKNKDNFFKAKASHILVETVE--------EANKLKKELNKGADFAE 182

Query: 299 LAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +A+E     G + +  SLG F    +  V+  + +  + K G+ +  +   FGY   H+ 
Sbjct: 183 MAKENSKDPGSAANGGSLGEFKNGDM--VAEFNDVVKILKVGEISDPVKSKFGY---HIV 237

Query: 355 NIKPSFTVSFQEVKKDIANQM---RITKASEKVKEDYKRLEEFL 395
            +      +  EVK+++  Q+   + T   EK+++D K + E+L
Sbjct: 238 KVDEKSARTLDEVKEELKQQLTQAKFTDYIEKMQKDAK-ISEYL 280


>gi|119503111|ref|ZP_01625196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine gamma
           proteobacterium HTCC2080]
 gi|119461457|gb|EAW42547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine gamma
           proteobacterium HTCC2080]
          Length = 297

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 24/129 (18%)

Query: 267 PEIRT---VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL----------- 312
           PEIR    + +L   N  EA EA ++L+  K  +    EQG+S +++++           
Sbjct: 137 PEIREASHILRLCTDNCDEASEAIETLQSLKNRL----EQGESFANLAIEFSQDPGSKTR 192

Query: 313 -GSFSKEYIPDVS-----LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
            G  S+    D       + D++F++ + G F+ ++   FG+ I  + +I  S T SF+E
Sbjct: 193 GGRLSQGIERDAENVDQVVRDALFAIPEVGGFSDIVRSRFGFHILKLESITASRTRSFEE 252

Query: 367 VKKDIANQM 375
           V+  +  ++
Sbjct: 253 VRPALVAEI 261


>gi|82703233|ref|YP_412799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
 gi|82411298|gb|ABB75407.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
          Length = 265

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 18/138 (13%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           +S++EL  EYE  K +    E +    ++   ++EA +    LKKG KF +LA E+    
Sbjct: 117 VSDEELHKEYETVKTQMGDKEYK-AHHILVATEEEAKDIIAKLKKGAKFDKLAGEKS--- 172

Query: 308 SDISLGSFSK----EYIPDVS----LADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNIK 357
             +  GS SK    ++ P  S     A+++  L  KG  T  PV    FG+ +  + +++
Sbjct: 173 --LDTGSKSKGGELDWSPAASYVQPFAEALTKL-HKGQLTDQPV-KTPFGWHVIRLDDVR 228

Query: 358 PSFTVSFQEVKKDIANQM 375
           P     F+E+K+++A ++
Sbjct: 229 PLKIPPFEEIKQNLAQRV 246


>gi|331005209|ref|ZP_08328603.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC1989]
 gi|330420991|gb|EGG95263.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC1989]
          Length = 635

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 105/242 (43%), Gaps = 17/242 (7%)

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
           + R   Y+ L    +P     S+  ++  ++  K+ Y + E   I YI  +V   EK I 
Sbjct: 187 QTRDFSYVTLPLGELPQEMTVSDEEISTRYDLNKNQYLSTEEVAIEYIELNVASIEKDIT 246

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-----AFQSLKKGKKFIQLAEE 302
           I+++ +Q +Y+     Y +   R    ++     EA +       + L  G  F  LA E
Sbjct: 247 ITDEAIQQQYDSIVASYNATTQREAAHIMIEGDNEAAQQKIISVKEQLASGADFSALASE 306

Query: 303 Q----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYV--IAHVSN 355
                G   +  +LG  + +  P+ +  +++ SL +      V I G+  ++  IA    
Sbjct: 307 YSDDFGTRDNGGNLGVSAGDGFPE-AFEEALLSLTEGQVSEAVEIDGATHFIKLIALTEK 365

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
             P+F    Q++K  I ++++  +A E+   D + LEE      ++DE++    I +I  
Sbjct: 366 TAPTF--DSQKIK--IESELKRAQAEEQFILDLQTLEELAYNAENLDEVAAELGISAIKT 421

Query: 416 PL 417
            L
Sbjct: 422 GL 423


>gi|285808215|gb|ADC35749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [uncultured bacterium
           293]
          Length = 392

 Score = 42.0 bits (97), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 12/151 (7%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKKGK 294
            E E K  +S+ E +AEY+KNK +Y  P   T+ ++V        +  A++  +  + G+
Sbjct: 151 RELEGKTSVSDAEARAEYQKNKAEYDKPGTVTLREIVVGGEDAATRARAEDVAKRARAGE 210

Query: 295 KFIQLAEEQGKSLSDISLGSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            F  LA+    + S  + G   +    +  PD  LA  +F+L K G   PV     G+ I
Sbjct: 211 DFAALAKSTSSAASAKNGGELGQLSHTDLAPD--LARIVFALPKGGVTDPVPVAK-GFRI 267

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
             V +      V F++VK +I  ++   KAS
Sbjct: 268 LKVEDRSEGGLVPFEQVKAEITRKLVQEKAS 298


>gi|307571805|emb|CAR84984.1| protein export peptidyl-prolyl isomerase protein [Listeria
           monocytogenes L99]
          Length = 279

 Score = 42.0 bits (97), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 16/167 (9%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           ++ Y L      E   + S+  L+  YE      + P+I TV  ++  ++ +A E  Q L
Sbjct: 91  QLKYNLLVQKATEANTDTSDKVLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKL 144

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347
           K G KF  LA+E     +    G     + P   D +   + ++L  KGD +  +   +G
Sbjct: 145 KDGAKFADLAKEYSTDTATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 204

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-----NQMRITKASEKVKEDYK 389
           Y I  +   KP+   +F++ KK +      +Q+      + +K++YK
Sbjct: 205 YHIIQMD--KPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 249


>gi|119385325|ref|YP_916381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
 gi|119375092|gb|ABL70685.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
          Length = 279

 Score = 42.0 bits (97), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR-TVEQLVFPN 279
           K +  A E ++ +Y+   V EK    E    EL+A Y++       P +      ++   
Sbjct: 86  KRDAVALEIEKRAYLAGSVLEKIAAAEPDEAELKAAYDQAFGGQAEPAVEYNAAHILVKT 145

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKG 336
           ++EA+   + L +G  F  LAEE+    S  +   LG F  E + +   A+++ +L +KG
Sbjct: 146 REEAEAIAKQLAEGADFGALAEEKSTDNSGPNKGDLGWFQPEQMVE-PFAEAVKAL-EKG 203

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +  +   FG+ +  +++ +     +F+E+K+ +A Q+R  K   +++   KR+ E
Sbjct: 204 QVSEPVETQFGWHVIKLNDTREVTPPAFEEIKEQLAVQVRRDKVQAEIE---KRVTE 257


>gi|313617659|gb|EFR89948.1| foldase protein PrsA [Listeria innocua FSL S4-378]
          Length = 291

 Score = 42.0 bits (97), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 17/138 (12%)

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321
           K + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     +D +      +  P 
Sbjct: 132 KTWQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYS---TDTATKENGGQLAPF 187

Query: 322 -----DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI----- 371
                D +   + ++L  KGD +  +   +GY I  +   KP+   +F + KK +     
Sbjct: 188 GSGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTFDKDKKAVKESYL 245

Query: 372 ANQMRITKASEKVKEDYK 389
           A+Q+      + +K++YK
Sbjct: 246 ASQLTTENMQKTLKKEYK 263


>gi|16801386|ref|NP_471654.1| hypothetical protein lin2322 [Listeria innocua Clip11262]
 gi|46396988|sp|Q929F4|PRSA2_LISIN RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|16414834|emb|CAC97550.1| lin2322 [Listeria innocua Clip11262]
          Length = 291

 Score = 42.0 bits (97), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 17/138 (12%)

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321
           K + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     +D +      +  P 
Sbjct: 132 KTWQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYS---TDTATKENGGQLAPF 187

Query: 322 -----DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI----- 371
                D +   + ++L  KGD +  +   +GY I  +   KP+   +F + KK +     
Sbjct: 188 GSGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTFDKDKKAVKEAYL 245

Query: 372 ANQMRITKASEKVKEDYK 389
           A+Q+      + +K++YK
Sbjct: 246 ASQLTTENMQKTLKKEYK 263


>gi|313622749|gb|EFR93091.1| foldase protein PrsA [Listeria innocua FSL J1-023]
          Length = 291

 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 17/138 (12%)

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321
           K + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     +D +      +  P 
Sbjct: 132 KTWQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYS---TDTATKENGGQLAPF 187

Query: 322 -----DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI----- 371
                D +   + ++L  KGD +  +   +GY I  +   KP+   +F + KK +     
Sbjct: 188 GSGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTFDKDKKAVKESYL 245

Query: 372 ANQMRITKASEKVKEDYK 389
           A+Q+      + +K++YK
Sbjct: 246 ASQLTTENMQKTLKKEYK 263


>gi|73541086|ref|YP_295606.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
 gi|72118499|gb|AAZ60762.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
          Length = 264

 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           S+DEL+ +Y+K K ++ + +   V  ++   + +A      +K G KF  +A+   K   
Sbjct: 110 SDDELRKQYDKIKSQFGNGKEYHVRHILVEKEADAKAIIAKIKGGAKFEDMAKASSKDPG 169

Query: 309 DISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTV 362
             + G     + S  Y+P+ S A    +  KKG  T   +   FG+ I  + + + +   
Sbjct: 170 SAANGGDLDWANSGSYVPEFSAA---MTTLKKGQMTDTPVKTQFGWHIIELVDTRDAKIP 226

Query: 363 SFQEVKKDIANQM 375
           SF+EVK  +   M
Sbjct: 227 SFEEVKPQLMQMM 239


>gi|312796410|ref|YP_004029332.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI
           454]
 gi|312168185|emb|CBW75188.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia
           rhizoxinica HKI 454]
          Length = 260

 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           S+DE++A YE+  ++        +  ++ P++++A E    +K G  F  LA++  K   
Sbjct: 112 SDDEIKARYEQLIKQAGGGNELHLHHILVPDEQQAKELIAKIKAGASFEDLAKQHSKDPG 171

Query: 309 DISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTV 362
               G     +  + Y+P+   AD+   L KKG+ T   +H  FG+ I  + + +     
Sbjct: 172 SAKNGGDLDWANPQSYVPE--FADAAGKL-KKGEVTSTPVHTQFGWHIIRLDDSRAIQPP 228

Query: 363 SFQEVKKDIANQM 375
              +VK  +A Q+
Sbjct: 229 PLDQVKAQVAQQL 241


>gi|149916816|ref|ZP_01905318.1| hypothetical protein PPSIR1_05628 [Plesiocystis pacifica SIR-1]
 gi|149822533|gb|EDM81922.1| hypothetical protein PPSIR1_05628 [Plesiocystis pacifica SIR-1]
          Length = 269

 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 245 KIEISND--ELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ-LA 300
           + E++ D   L+A YE+ + EK+F PE R +E + FP  +EA+ A   LK G+  I  +A
Sbjct: 110 RAEVAADTEALRARYERERDEKFFEPERRRIEAVYFPTFEEAEGALARLKSGEVDIAGVA 169

Query: 301 EEQGKSL 307
            EQG+ +
Sbjct: 170 AEQGRDV 176


>gi|304439703|ref|ZP_07399603.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371809|gb|EFM25415.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 261

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 15/154 (9%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--- 302
           +EI++++L+  Y+ +K+ + +        ++  ++  A E  + L  G  F +LA+E   
Sbjct: 102 VEITDEDLKNYYDNHKDNFKNNASVEASHILVEDESVAKEIKEKLNNGADFKELAKEYSN 161

Query: 303 -----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                 G +L   + G   KE+       D+ F++   G+ +  +   FGY I  V+N  
Sbjct: 162 CPSKENGGNLGVFTKGQMVKEF------EDAAFNMGV-GEISDPVKTQFGYHIIKVTNKN 214

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                +F+E K DI   +R  K  +  K   +RL
Sbjct: 215 DESVRTFEEAKPDIERLVRREKEKDLYKHTVERL 248


>gi|149194292|ref|ZP_01871389.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Caminibacter
           mediatlanticus TB-2]
 gi|149135467|gb|EDM23946.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Caminibacter
           mediatlanticus TB-2]
          Length = 292

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 26/214 (12%)

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL-FDVHEKEK--KIEISNDEL 253
           L  +HV  +       LT + +K K     P++K     L  D+  K++   I+IS+ E 
Sbjct: 77  LPAQHVKKLVKDYADTLTVYEKKAKSIENTPQFKAAKMKLAVDMWLKKEFDNIKISDKEA 136

Query: 254 QAEYEKNKEKYF--SPEIRTVEQLVFPNQKEADEAFQSLK--KGK----KFIQLAEEQGK 305
           +A YEKNK+ +F  +P+I+    LV  ++K A +    LK  KGK    KF +LA++   
Sbjct: 137 KAFYEKNKDVFFKSTPQIKARHILV-KDEKLAKKLINELKGLKGKALEEKFAELAKKYSI 195

Query: 306 SLSDIS---LGSFS-KEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNIKPS 359
             S +    LG FS K+ +P+ + A       K G+ T  PV    FGY I  V   K +
Sbjct: 196 GPSKVQGGELGWFSPKQMVPEFAKAAESL---KPGEITLKPV-KTRFGYHIILVEGKKSN 251

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             + +++VK  I   ++    ++K+K++ + L++
Sbjct: 252 TYIPYEKVKDQIIGYLK----NQKLKKELETLKK 281


>gi|157164574|ref|YP_001466661.1| glutamate-1-semialdehyde 2,1-aminomutase [Campylobacter concisus
           13826]
 gi|112800465|gb|EAT97809.1| putative peptidyl-prolyl cis-trans isomerase D, homolog
           [Campylobacter concisus 13826]
          Length = 485

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 6/157 (3%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++K  +  V  I++  + FV   F+ WG  D   + + +++V  VG + +      
Sbjct: 1   MLSWMQKHKKYLVVTIWVSTIAFVGAGFVGWGAYD--LNSNRATSVAKVGHRNISVQELQ 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + +     +      +  E+A  +GL+   L   +    L  F +DIGL  +   V  
Sbjct: 59  QKYDRLYQYYNNVFEGKLTQEKAEELGLENAALQAAIQENLLLNFADDIGLSVNKDDVLK 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
            I   P F  KD  F  +++   L R  IN  ++ D+
Sbjct: 119 YIIVDPTFQ-KDGVFDKNLYYDVLRRARINPTDFEDN 154


>gi|313607374|gb|EFR83765.1| foldase protein PrsA [Listeria monocytogenes FSL F2-208]
          Length = 257

 Score = 41.6 bits (96), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 13/137 (9%)

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKE 318
           K + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     +    D  L  F   
Sbjct: 96  KTWQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDTATKENDGQLAPFGPG 154

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA-----N 373
            + D +   + ++L  KGD +  +   +GY I  +   KP+   +F++ KK +      +
Sbjct: 155 KM-DPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTFEKDKKAVKASYLES 211

Query: 374 QMRITKASEKVKEDYKR 390
           Q+      + +KE++K+
Sbjct: 212 QLTTENMQKTLKEEFKK 228


>gi|227499517|ref|ZP_03929624.1| possible peptidylprolyl isomerase PrsA [Anaerococcus tetradius ATCC
           35098]
 gi|227218396|gb|EEI83647.1| possible peptidylprolyl isomerase PrsA [Anaerococcus tetradius ATCC
           35098]
          Length = 360

 Score = 41.6 bits (96), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 69/131 (52%), Gaps = 9/131 (6%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           +S+DE++  +E+NK+++   +      ++  +++ A E    L  G+ F +LA+E  K  
Sbjct: 163 VSDDEIKKYFEENKDQFTKVD---ASHILVDDEETAKEIKAKLDNGEDFAKLAKEYSKDT 219

Query: 308 SDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           +       LGSF K  +      ++ FS+ K+G+ +  +   FGY I  +++I  S+  S
Sbjct: 220 ASAKNGGELGSFGKGQMV-KEFEEAAFSM-KEGEISNPVKSQFGYHIIKINSISDSYEKS 277

Query: 364 FQEVKKDIANQ 374
            +E+ K I ++
Sbjct: 278 KEEITKKIKDK 288


>gi|149182999|ref|ZP_01861454.1| post-translocation molecular chaperone [Bacillus sp. SG-1]
 gi|148849283|gb|EDL63478.1| post-translocation molecular chaperone [Bacillus sp. SG-1]
          Length = 324

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 20/161 (12%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--- 302
           IE+S DELQ  Y+      + PEI  V  ++  +++ A E  Q L  G KF  LA+E   
Sbjct: 129 IEVSEDELQEYYDN-----WKPEIE-VRHILVDDEETAKEVKQKLADGAKFEDLAKEYSN 182

Query: 303 -QGKSLSDISLGSFSKE----YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             G + +  SLG    E    ++P+ S A       K G  +  +   +G+ I  V++ K
Sbjct: 183 DPGSAENGGSLGWVDYEGRQNFVPEFSEA---LEKLKTGKVSEPVKTQYGFHIIEVTDKK 239

Query: 358 PSFTVSFQEVKKDIANQMRITKAS-EKVKEDYKRLEEFLAL 397
                SF E+K ++   ++++K + EK+++  K + E   L
Sbjct: 240 EKN--SFDEMKDELEKSLKLSKVTPEKIQQAMKEIVEDAGL 278


>gi|312131757|ref|YP_003999097.1| ppic-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
           byssophila DSM 17132]
 gi|311908303|gb|ADQ18744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
           byssophila DSM 17132]
          Length = 709

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 104/263 (39%), Gaps = 36/263 (13%)

Query: 280 QKEADEAFQSLKKGKKFIQLAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +K+A E     K G  F  LA +    G +     LGSF  +     +  D+IFS +  G
Sbjct: 371 KKKALEILAQAKSGMDFAFLARQFGSDGTAQQGGDLGSFKNDGTMVKAFEDAIFSFSGTG 430

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-----ANQMRITKASEKVKEDYKRL 391
               ++   FGY I  V+  K +       + K++      + +   KASE         
Sbjct: 431 VLPNLVTTDFGYHIVKVTEPKSNLKYKLATITKELHVGDEGSNLVFQKASE--------- 481

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK--GKEVAAIPYKEQLLFRVFGKDDP 449
                L  S   I   E+    D  +V F  ++V+     V  +    +L+   +GKD  
Sbjct: 482 -----LMNSAKSIKDLEEAAKKDNSIVLFNAENVQPGATVVNTLRNARELVQWAYGKDAK 536

Query: 450 LSK--DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
           + K  D    L D +Y+   +K +    D K E        D+K +  A   + K  +L+
Sbjct: 537 VGKVADRVFVLED-NYVVAALKSAADKNDPKAE--------DFKDLIAARIRNEKKAELI 587

Query: 508 LEYSKEGK-NFRDIGKNLGASLL 529
            +   +GK +F +I K  GA  L
Sbjct: 588 TKKLGDGKGSFEEIAKKYGAGAL 610


>gi|312860326|gb|ADR10202.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium enrichment
           culture clone F5-11]
          Length = 290

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 10/150 (6%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           E  KKIEI +D   AEY     K+F  ++R   Q+V  ++  A      LK G  F QLA
Sbjct: 135 EASKKIEI-DDAAIAEYYAQLPKHFEYDLR---QIVTADEASARAVIAKLKDGADFAQLA 190

Query: 301 EEQGKSLSDI---SLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGYVIAHVSNI 356
            E  ++       SLG    E +P  ++AD++ ++ + G FT   +    G+ +  V  +
Sbjct: 191 SEMSQAPEAANGGSLGWLMAEQLP-TTIADAVRAM-QAGTFTDQPLQTPQGWHVVRVEGV 248

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +    V  +  +  I  ++R  K  + + +
Sbjct: 249 RQLEQVPLETARAWIEGELRNQKIQQMIDQ 278


>gi|297521498|ref|ZP_06939884.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           OP50]
          Length = 152

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYV 349
           KG  F  LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++
Sbjct: 2   KGGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFL 60

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           I  + +I+P+   S  EV+ DIA +++  KA
Sbjct: 61  IVRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 91


>gi|39995469|ref|NP_951420.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39982232|gb|AAR33693.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
 gi|307634691|gb|ADI83192.2| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           sulfurreducens KN400]
          Length = 297

 Score = 41.2 bits (95), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 26/191 (13%)

Query: 221 KDNY-RAPEYK-RISYILFDVHEKE-------KKIEISNDELQAEYEKNKEKYFSPEIRT 271
           KD + R PE + R+ Y + D   +E         +++S+ EL+A Y+++ + +  PE   
Sbjct: 83  KDGFDRKPEVRERLGYFVDDFLAREYLTKVVIAGVKVSDAELRAYYQEHAKDFVMPEQAI 142

Query: 272 VEQLVF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319
           V  +                + + +   + LKKG+ F  +A E  + +     G      
Sbjct: 143 VRHIFIGFTDAADSQAKAAAKTKTEGVLERLKKGEDFAAVAAEASEDIESAKEGGLLGAI 202

Query: 320 IPDVSLAD----SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            P  + ++    ++F+L K G+ + ++   FGY I  V   K    + F EVK  + +++
Sbjct: 203 TPGQTNSEEFEKAVFAL-KAGEMSGLVESPFGYHIVKVDERKEKRALPFDEVKDALRSKL 261

Query: 376 RITKASEKVKE 386
           +     +K++E
Sbjct: 262 QGEAEQKKLRE 272


>gi|226309756|ref|YP_002769650.1| hypothetical protein BBR47_01690 [Brevibacillus brevis NBRC 100599]
 gi|226092704|dbj|BAH41146.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 300

 Score = 41.2 bits (95), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           + ISY +       K + I ++EL   Y    ++Y  P    + Q+V  +QKEA++    
Sbjct: 122 QEISYQILLQTLATKDMTIKDEELINVYNSRSDRYTRPMQVRLGQIVVASQKEAEQVLAD 181

Query: 290 LKKGKKFIQLAEEQGKSL--------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           LK G  F  +A  + +S+         D+   S     +PD   A  I    +K  ++  
Sbjct: 182 LKNGADFQTIA--KARSIDADTAVNGGDVGWVSIKDNRLPDE--AKPIVEKLEKDKYSEA 237

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           I     YVI  +   + +   +F+EVK ++  +M
Sbjct: 238 IKIQDQYVIYQLRERREASQRTFEEVKDELRREM 271


>gi|116873652|ref|YP_850433.1| prsA protein, export protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742530|emb|CAK21654.1| prsA protein, export protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 291

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 11/144 (7%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           ++ Y L      E   + S+  L+  Y     K + P+I TV  ++  ++K+A E  Q L
Sbjct: 105 QLKYNLLVQKATEANTDTSDKALKEYY-----KTWQPDI-TVSHILVADEKKAKEVEQKL 158

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347
           K G KF  LA+E     +    G     + P   D +   + ++L  KGD +  +   +G
Sbjct: 159 KDGAKFSDLAKEYSTDTATKENGGQLAAFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 218

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDI 371
           Y I  +   +P+   +F + KK +
Sbjct: 219 YHIIQMD--EPATKTTFDKDKKAV 240


>gi|186475788|ref|YP_001857258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
 gi|184192247|gb|ACC70212.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
          Length = 259

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 14/144 (9%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE- 302
           KK + ++ E++A+Y++  ++    E   +  ++  N+++A +    +K G  F  LA++ 
Sbjct: 107 KKNQPTDAEVKAKYDELVKQIGGKEYH-LHHILVENEQQAKDLIAKIKGGASFEDLAKQF 165

Query: 303 -----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSN 355
                 GK+  D+   S  K Y+P+ + A       +KG  T  PV H  FG+ I  V +
Sbjct: 166 SKDPGSGKNGGDLDW-SDPKAYVPEFAAAAEKL---QKGQMTDEPV-HTQFGWHIIRVDD 220

Query: 356 IKPSFTVSFQEVKKDIANQMRITK 379
           ++ +    F++VK  IA QM+  K
Sbjct: 221 VRQTPPPPFEQVKAQIAQQMQQEK 244


>gi|315637996|ref|ZP_07893181.1| major antigenic peptide PEB4 [Campylobacter upsaliensis JV21]
 gi|315481844|gb|EFU72463.1| major antigenic peptide PEB4 [Campylobacter upsaliensis JV21]
          Length = 273

 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           +L +V++ +  + I++   +++  YEKNKE++  P     + ++  +++EA      LK 
Sbjct: 97  LLLNVYQNKIMQDIKVDAAKVKEAYEKNKEQFVKPARVKAKHILVTSEQEAKNIINELKG 156

Query: 293 ------GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV- 341
                  KKF ++A     + G + +   LG F +  +      D+ FSL KKG+ T   
Sbjct: 157 LKDKELEKKFTEIARTKSIDTGSAANGGDLGWFDESTMVK-PFTDATFSL-KKGEITKTP 214

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           +  +FGY I    + +    V+F++ K  I N+++
Sbjct: 215 VKTNFGYHIILKQDSRAKEQVAFKDAKMGIENRLK 249


>gi|86159490|ref|YP_466275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776001|gb|ABC82838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 587

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 18/141 (12%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI-------- 297
           + I + +L+A Y+ +++++ +  +  ++QL FP+ K A  A + L +G  F         
Sbjct: 423 VSIKDADLRAYYDGHRDEFTAAPLYRLDQLAFPDMKGAQRAAERLARGTDFKWLKANAEG 482

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF---GYVIAHVS 354
           QLA  Q ++L D      S + +P+  LA ++ S A+ GD+   +H      GYV+  VS
Sbjct: 483 QLAPAQ-RAL-DFEGQLLSAKGLPE-DLAGALAS-AQVGDYR--MHQGPRGQGYVVLVVS 536

Query: 355 NIKPSFTVSFQEVKKDIANQM 375
              P     ++E +KDI  ++
Sbjct: 537 RTDPQVQ-PYEEARKDIQKKL 556


>gi|329893793|ref|ZP_08269881.1| hypothetical protein IMCC3088_2019 [gamma proteobacterium IMCC3088]
 gi|328923516|gb|EGG30830.1| hypothetical protein IMCC3088_2019 [gamma proteobacterium IMCC3088]
          Length = 309

 Score = 40.8 bits (94), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 36/167 (21%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           +S+ +++  Y  N+ ++++PE  T   + FP ++EAD             QLA + G  +
Sbjct: 151 LSDQDIRDYYSNNQAQFWAPERYTFSHVFFPREREAD-----------MRQLAAKLGTEI 199

Query: 308 SDISLG-SFSKEYIP----------------DVSLADSIFSLAKK-GDFTPVIHGSFGYV 349
            D     ++   ++P                      +  +L  + G++   I  +FG+ 
Sbjct: 200 QDFDQALNYGAPFLPGYHFTRQTAEQLARQFGAGFVSNFLALPPRVGEWQSPIASTFGWH 259

Query: 350 IAHVSNIKPSFTVSFQEVKKDIA-------NQMRITKASEKVKEDYK 389
           +  +  ++   T+S  E +KDI          M ++ A   +++DY+
Sbjct: 260 LVWLQEVETGRTLSLDEAQKDIVATLQRERRDMALSDAKAVLRQDYE 306


>gi|206889870|ref|YP_002249039.1| foldase protein PrsA 1, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741808|gb|ACI20865.1| foldase protein PrsA 1, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 292

 Score = 40.8 bits (94), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 86/161 (53%), Gaps = 10/161 (6%)

Query: 225 RAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKE 282
           R  E+K+I+ I   + ++ K ++ ++  + +  YEKNK+ +  P E+R + Q+V  N+ E
Sbjct: 91  RMEEFKKITLINMLLEQEIKTLQQVTEQDAKEYYEKNKDMFIKPVEVR-LSQIVVKNEDE 149

Query: 283 ADEAFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           A + ++ + KG++F ++A+E  +      S   +G F K  + +  + +  FSL K    
Sbjct: 150 AKKVYERIDKGEEFSKIAKELSRDEKTKASGGDIGFFKKGQL-NPQIENVAFSLRKGQVS 208

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
            P+      Y+   ++++K +  + F+++K  +  Q++  K
Sbjct: 209 MPLTFKGELYIF-KITDVKGN-PIDFEQIKGQLIEQLKAKK 247


>gi|325479410|gb|EGC82506.1| putative peptidylprolyl isomerase PrsA1 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 248

 Score = 40.8 bits (94), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 75/154 (48%), Gaps = 15/154 (9%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
           + +H+  ++I++ + E++A YEKNKE    P +     ++  + +EA +  + +++G +F
Sbjct: 83  YAMHKIFEEIKLDDSEIKAYYEKNKENLNPPLLYEASHILVKDLEEASKIKKEIEEGLEF 142

Query: 297 IQLA--------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            + A        ++ G SL     G   KE+   +   DSI    + G  +  +   FGY
Sbjct: 143 SEAAKKYSIDPSKDNGGSLGKFPKGVMVKEFQEGL---DSI----EVGQISEPVKSQFGY 195

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            +  + NI+   T S+ E+K  +  ++ + K  E
Sbjct: 196 HLIKLENIENVETPSYDEIKDQVKQRVLMIKRQE 229


>gi|121607668|ref|YP_995475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
 gi|121552308|gb|ABM56457.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
          Length = 374

 Score = 40.8 bits (94), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 15/112 (13%)

Query: 291 KKGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           K GK F QLA++         QG  L  ++ GS     +P    A  + +L + GD + V
Sbjct: 246 KAGKDFAQLAKDHSEDNASAAQGGDLGFLTDGS----TVPPFEQA--LKALKEPGDLSEV 299

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           +  SFGY I  +   +P+    F E++  +  Q R     E   +D +RL+E
Sbjct: 300 VETSFGYHIIRLEERRPAGLRGFDEMRDPLRLQARNALLREARAKDAQRLQE 351


>gi|313636759|gb|EFS02412.1| foldase protein PrsA [Listeria seeligeri FSL S4-171]
          Length = 167

 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 11/135 (8%)

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321
           K + P+I TV  ++  ++ +A E  Q LK G+KF  LA+E     +    G     + P 
Sbjct: 23  KTWQPDI-TVSHILVADEAKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGKLAPFGPG 81

Query: 322 --DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-----ANQ 374
             D +   + ++L  KGD +  +   +GY I  +   +P+   +F + KK +      +Q
Sbjct: 82  KMDPAFEKAAYALKNKGDISDPVKTQYGYHIIQMD--EPATKTTFDKDKKAVKESYLQSQ 139

Query: 375 MRITKASEKVKEDYK 389
           +      + +K++YK
Sbjct: 140 LTTENMQKTLKKEYK 154


>gi|292493646|ref|YP_003529085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
 gi|291582241|gb|ADE16698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           D+ F+L K GD +  +   FG  +  +  +KPS  +SF+EVK  +  Q+R
Sbjct: 220 DAAFALTKPGDISKPVETPFGVHLIKLLEVKPSRQLSFEEVKGKLMRQVR 269


>gi|163737941|ref|ZP_02145357.1| preprotein translocase ATPase subunit [Phaeobacter gallaeciensis
           BS107]
 gi|161388557|gb|EDQ12910.1| preprotein translocase ATPase subunit [Phaeobacter gallaeciensis
           BS107]
          Length = 283

 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 18/190 (9%)

Query: 210 NAVLTQWFE----KYKDNYRAPEYKRISY-------ILFDVHEKEKKIEISNDELQAEYE 258
           +A+L Q  +    K + N   P+Y  +S        +  DV EK  +   S+++L+  Y+
Sbjct: 67  DAILDQLIQQTSLKQELNGEVPKYVALSLENEARSLLAADVIEKVMENAASDEDLRTAYD 126

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSF 315
           +        +      ++   +++A +    L  G  F  LA E+    S  +   LG F
Sbjct: 127 EKYTDGTGGDEFNASHILVETEEDAADIRAELDAGADFATLARERSTGPSGPNGGELGWF 186

Query: 316 SK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
           SK   +P    A  +      GD +  +   FG+ +  +++ + S   +F EV++++A Q
Sbjct: 187 SKGRMVPQFEEAVLVMG---AGDVSDPVQTQFGWHVIKLNDRRTSAAPTFDEVREELATQ 243

Query: 375 MRITKASEKV 384
           MR     ++V
Sbjct: 244 MRQEAVEDRV 253


>gi|217076606|ref|YP_002334322.1| basic membrane protein, putative [Thermosipho africanus TCF52B]
 gi|217036459|gb|ACJ74981.1| basic membrane protein, putative [Thermosipho africanus TCF52B]
          Length = 333

 Score = 40.8 bits (94), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 13/144 (9%)

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           LF+V  K+  +  S++EL   Y+K+ ++Y +P   T+  + F N+K A+     +  G+ 
Sbjct: 161 LFNVVTKDATV--SDEELMDYYQKHIDEYSTPTQYTLSLIAFDNEKVANAVKTKIVSGET 218

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIP-DVSLADSIFSL---AKKGDFTPVIHGSFGYVIA 351
           F  +A E G       +  F  E I  D +    +++    A +G     I     Y I 
Sbjct: 219 FDSIASEYG-------ISQFKYENIAEDTTFPGKLWNYIKNAPQGALLGPIDVDEKYYIF 271

Query: 352 HVSNIKPSFTVSFQEVKKDIANQM 375
            V N+ P  +  F EV+++I+N +
Sbjct: 272 KVENVVPMQSKKFDEVREEISNMI 295


>gi|302873039|ref|YP_003841672.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
 gi|307688832|ref|ZP_07631278.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
 gi|302575896|gb|ADL49908.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
          Length = 247

 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 13/162 (8%)

Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           +LF +   E  K +EI++ ++   Y+ N+E +  PE+ T   ++  ++++A E    ++ 
Sbjct: 79  MLFPIAADEVTKDVEIADQDVADFYKNNRELFKKPELATASHILVDSEEKAQEIKAEIEA 138

Query: 293 GKKFIQLAEEQGKSLSDI---SLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F   A +     S+     LG F K + +P+         + K  D  PV    FGY
Sbjct: 139 GLSFADAAAKYSTCPSNQRGGDLGQFQKGQMVPEFEEVAFTLPINKLSD--PV-KTQFGY 195

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQM----RITKASEKVKE 386
            +  V++ +P     F EV+  I  +M    R  K  EKV E
Sbjct: 196 HLIKVTDFQPEMIQDFDEVQVAIKEKMLQDRRQYKFLEKVDE 237


>gi|224373001|ref|YP_002607373.1| hypothetical protein NAMH_0972 [Nautilia profundicola AmH]
 gi|223589838|gb|ACM93574.1| conserved hypothetical protein [Nautilia profundicola AmH]
          Length = 478

 Score = 40.4 bits (93), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 164/394 (41%), Gaps = 55/394 (13%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVS-GSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
           W+A I  +     F+ WG     F     SSTV  +   +V        +       +++
Sbjct: 17  WIATIAFI--GAGFVGWGQ----FQFGRKSSTVAKIKDTEVSIQDVQEVYNNLFQEKNKQ 70

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
           +G  ++   A  +GL K+  D  +    L Q+ +D+G+         E+A+  L + KD 
Sbjct: 71  LGGTLDDATAEKMGLKKQAFDMAIQQGILRQYAKDLGMYVTD----EEVAKQVLQYFKDK 126

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
           K     ++  L + G   K++     K L    ++      ++PS  L        + + 
Sbjct: 127 K----TYLMYLKQTGQKAKDFEAKLRKQLLIQKLLTAL--HIKPSKTLQLTFASALYNSD 180

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
           +++  ++N   V    + S   +  ++EK K  Y++P   +I+ +   +    K +   N
Sbjct: 181 NLEIKIINKSSVK--VNLSEDEIKAFWEKNKQKYQSPTMYKIAIVKTPI----KGVATEN 234

Query: 251 DELQAEYEKNKEKYFSP--EIRTVEQ---------LVFPNQKEADEAFQSLKKGKKFIQL 299
           D L+A Y +NK  Y +   EI T E+         L   ++K+A  A++ LK+G +  +L
Sbjct: 235 D-LKAFYNENKTNYRNDKGEILTYEEAKNQVKKDYLAKISKKDAIIAYKKLKEGAENYEL 293

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH-VSNIKP 358
                     ++L + + + IP    A+ +  L + G   P +  +  Y+ A  V  IKP
Sbjct: 294 ----------LTL-TINNKIIP----AEKMQKLIQTGYLKPFVDNN-EYISAKLVEEIKP 337

Query: 359 S---FTVSFQEVKKDIANQMRITKASEKVKEDYK 389
               +  +  +V KD+ N   +     K KE  K
Sbjct: 338 KPLPYEEAKAQVTKDLLNIKTLQALENKAKEALK 371


>gi|91788447|ref|YP_549399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
 gi|91697672|gb|ABE44501.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
          Length = 261

 Score = 40.4 bits (93), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 10/133 (7%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           +KK  +++ +L+ EY+K        E +    LV   + EA     SLKKG KF  +A++
Sbjct: 108 QKKNPVTDADLKGEYDKFAAANGGKEYKARHILV-EKEAEAKAIIASLKKGGKFEDIAKK 166

Query: 303 QGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNI 356
           Q K     + G     +    Y+P+ S  +++  L  KG  T   +   FGY +  V +I
Sbjct: 167 QSKDPGSGAKGGDLDWANPSGYVPEFS--EALLKL-NKGQLTDAPVKSQFGYHVIRVDDI 223

Query: 357 KPSFTVSFQEVKK 369
           + +   SF+EVK 
Sbjct: 224 RNAQLPSFEEVKP 236


>gi|148262225|ref|YP_001228931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
 gi|146395725|gb|ABQ24358.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
          Length = 345

 Score = 40.4 bits (93), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 20/169 (11%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           D Y+A   +++  +     E   KI++   E++  Y+ N+ KY   E     Q+ F   K
Sbjct: 152 DQYKAQLKEQLERLRLMSQEVRAKIQVGEREMREYYDANRAKYGEEEFTRARQIYFKIDK 211

Query: 282 EADEA------------FQSLKKGKKFIQLA----EEQGKSLSDISLGSFSK-EYIPDVS 324
           +A E+             Q  K GK F +LA    ++   +     LG+F + + IP++ 
Sbjct: 212 KAAESEITRVTAAAANVLQEAKSGKDFAELAKKYSDDPAAAKDGGELGTFKRGDMIPEIE 271

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
            A       K G+ + ++    G  I  +          F+EVK +I +
Sbjct: 272 RA---LDTMKPGEISDLVRTPAGIHIIKLEERTKGKAKPFEEVKAEIED 317


>gi|108760198|ref|YP_628739.1| putative foldase protein PrsA [Myxococcus xanthus DK 1622]
 gi|108464078|gb|ABF89263.1| putative foldase protein PrsA [Myxococcus xanthus DK 1622]
          Length = 349

 Score = 40.4 bits (93), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 9/143 (6%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           ++ ++ +EL+A Y  +++ +  PE     Q+V     EA      LK GKKF  LA    
Sbjct: 174 RVAVTEEELRAWYGAHEKDFHEPEQVHAAQIVVKGLDEARRLQTQLKSGKKFADLARR-- 231

Query: 305 KSLSDIS-----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            SLS  +     LG F +  +P  +  + +F L   G  + V+   +G+ +  V   KP+
Sbjct: 232 YSLSADAKVGGDLGFFPRGQMPP-AFDEVVFKLG-VGQVSDVVSTEYGFHLFRVLERKPA 289

Query: 360 FTVSFQEVKKDIANQMRITKASE 382
               F EV+  +  ++   K S+
Sbjct: 290 RKREFVEVRSLVEGKLLEQKRSQ 312


>gi|78222035|ref|YP_383782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
 gi|78193290|gb|ABB31057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
          Length = 339

 Score = 40.4 bits (93), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 19/140 (13%)

Query: 248 ISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEA-----------DEAFQSLKKGKK 295
           I++DE +  Y  NK+K+   E +R    LV  +QK +           +   + LK G  
Sbjct: 172 ITDDEAKKFYNDNKDKFRREEAVRASHILVSADQKASPEEKKKAKEKAEALLKQLKGGAD 231

Query: 296 FIQLAEEQGKSLSDIS---LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F +LA+++    S      LG F K + +P+     + F+L K G+ + V+   FGY I 
Sbjct: 232 FAELAKKESSCPSSAQGGDLGFFGKGQMVPE--FEKTAFNL-KPGEVSDVVETQFGYHII 288

Query: 352 HVSNIKPSFTVSFQEVKKDI 371
            ++  K + TV F+E K+ I
Sbjct: 289 KLAEKKDAETVPFEEAKERI 308


>gi|241889428|ref|ZP_04776729.1| peptidylprolyl isomerase PrsA1 [Gemella haemolysans ATCC 10379]
 gi|241863971|gb|EER68352.1| peptidylprolyl isomerase PrsA1 [Gemella haemolysans ATCC 10379]
          Length = 312

 Score = 40.4 bits (93), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 30/140 (21%)

Query: 249 SNDE-LQAEYEKNKEKYFSPEIR-TVEQLVFPN-------QKEADEAFQSLKKGKKFIQL 299
           +NDE L+  YEKNK +Y    I  +V+    PN       +K+A++  + LK G  F  L
Sbjct: 129 TNDEKLKESYEKNKHQYHLAHILISVKSESNPNGLSDEEAKKKAEDVLKKLKDGGDFATL 188

Query: 300 AEEQGKSLSDISLG-----------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           A+E     ++ S G           SF KE+       D+ ++L+ K   + V+  SFGY
Sbjct: 189 AKENSNDTANASNGGDLGWSSKEDNSFVKEF------KDAAYALS-KDKTSDVVKTSFGY 241

Query: 349 VIAHVSNIKPSFTVSFQEVK 368
            I  V + K S   SF E+K
Sbjct: 242 HIIKVLDEKDS---SFDELK 258


>gi|121604733|ref|YP_982062.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
 gi|120593702|gb|ABM37141.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
          Length = 263

 Score = 40.4 bits (93), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 10/133 (7%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           +KK  +++ +L+AEY+K        E +    LV   + EA     SLKKG KF  +A++
Sbjct: 110 QKKNPVTDADLKAEYDKFAAASGGKEYKARHILV-EKESEATAIIASLKKGGKFEDIAKK 168

Query: 303 QGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNI 356
           Q K     + G     +    Y+P+ +  +++  L  KG  T   +   FGY +  V +I
Sbjct: 169 QSKDPGSGAKGGDLDWANPSSYVPEFT--EALLKL-NKGQMTDTPVKSQFGYHVIRVDDI 225

Query: 357 KPSFTVSFQEVKK 369
           + +   +F+EVK 
Sbjct: 226 RSAKLPAFEEVKP 238


>gi|254284437|ref|ZP_04959405.1| PPIC-type PPIASE domain protein [gamma proteobacterium NOR51-B]
 gi|219680640|gb|EED36989.1| PPIC-type PPIASE domain protein [gamma proteobacterium NOR51-B]
          Length = 294

 Score = 40.4 bits (93), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 15/133 (11%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQ---------SLKKGKKFIQLAEEQGKSLSDIS----LG 313
           PE R V  ++   +   D   +         S+ +G KF  LA++  +  +       LG
Sbjct: 136 PEKRKVAHILLTCEPGCDREAKKAQLKDFSASIAEGAKFADLAKQYSEDFASARNGGRLG 195

Query: 314 SFSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           +   +   +++ A   + F+L   GD +P +   FGY +  +  I+PS+TV F+ ++  I
Sbjct: 196 TAIAKDDGNIAFAFRKASFALENPGDLSPPVETLFGYHLIVLEEIEPSYTVPFERLRDQI 255

Query: 372 ANQMRITKASEKV 384
              +     +E+V
Sbjct: 256 VQLLEREWTNEQV 268


>gi|295700292|ref|YP_003608185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
 gi|295439505|gb|ADG18674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
          Length = 265

 Score = 40.4 bits (93), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 13/140 (9%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           KK  +S+D+L+A Y   K K  S + + V  ++  +Q EA +    L KG  F  LA+E 
Sbjct: 114 KKNPVSDDQLKAMYNDMKAKGGSTQYK-VRHILVKDQGEAKDIIAKLNKGASFGDLAKES 172

Query: 304 GKSLS-----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNI 356
             + +     D+   + SK   P    AD++  L  KG++T  PV  G +G+ +  V + 
Sbjct: 173 IDADTRYNGGDLGWITSSKVVKP---FADAVSHL-HKGEYTRMPVKTG-YGFHVIEVDDT 227

Query: 357 KPSFTVSFQEVKKDIANQMR 376
           +P    SF+++K  +  Q +
Sbjct: 228 RPLQVPSFEDMKPMLYQQAQ 247


>gi|149181601|ref|ZP_01860095.1| post-translocation molecular chaperone [Bacillus sp. SG-1]
 gi|148850715|gb|EDL64871.1| post-translocation molecular chaperone [Bacillus sp. SG-1]
          Length = 313

 Score = 40.4 bits (93), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 8/132 (6%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           ++ I++D++Q  +E NK+ +   E      ++  N++ A E  + L  G+ F QLAEE  
Sbjct: 155 RVSITDDQVQEYFETNKDSFAQQEQVEASHILVENEETAKEVKEMLDNGEDFAQLAEEYS 214

Query: 305 KSLSDI----SLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
              S+      LG F+K E + +    +  FS+  +    P I   FG+ I  V++ K +
Sbjct: 215 VDTSNAGSGGELGYFAKGEMVAE--FEEKAFSMEIEEISNP-IETEFGFHIIKVTDKKEA 271

Query: 360 FTVSFQEVKKDI 371
                ++ K++I
Sbjct: 272 EEAVLEDHKEEI 283


>gi|312114549|ref|YP_004012145.1| hypothetical protein Rvan_1804 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219678|gb|ADP71046.1| hypothetical protein Rvan_1804 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 301

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 48/196 (24%)

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
           +V+ N  VP    PSN  L  WFE ++ NY +PE        FDV               
Sbjct: 103 VVMGNLVVPT---PSNDELKGWFESHRANYDSPER-------FDV--------------- 137

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
                   ++F  +++T       NQK+  +  +++++     Q   +Q +S  ++S  +
Sbjct: 138 -------SQFFVADLKT------GNQKQVSDLLETVREA--VPQPYTDQVRSYRNLSPEN 182

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK----D 370
            S+ +  D + A     LA +     V+    G+ IA V  + P+    F EVK     D
Sbjct: 183 LSQVFGSDFAAA----LLANRDTTWRVLQSKQGWHIARVDALHPAVPAVFDEVKHIVKAD 238

Query: 371 IANQMRITKASEKVKE 386
                R  KA E +++
Sbjct: 239 WEAAQRRQKALEAIRD 254


>gi|313632264|gb|EFR99323.1| foldase protein PrsA [Listeria seeligeri FSL N1-067]
          Length = 295

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 11/135 (8%)

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321
           K + P+I TV  ++  ++ +A E  Q LK G+KF  LA+E     +    G     + P 
Sbjct: 132 KTWQPDI-TVSHILVADEAKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGKLAPFGPG 190

Query: 322 --DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-----ANQ 374
             D +   + ++L  KGD +  +   +GY I  +   +P+   +F + KK +      +Q
Sbjct: 191 KMDPAFEKAAYALKNKGDISDPVKTQYGYHIIQMD--EPATKTTFDKDKKAVKESYLQSQ 248

Query: 375 MRITKASEKVKEDYK 389
           +      + +K++YK
Sbjct: 249 LTTENMQKTLKKEYK 263


>gi|312879532|ref|ZP_07739332.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminomonas
           paucivorans DSM 12260]
 gi|310782823|gb|EFQ23221.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminomonas
           paucivorans DSM 12260]
          Length = 297

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 66/143 (46%), Gaps = 6/143 (4%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++ +  L+  Y+ +++++   E   V  ++  ++  A +A  ++  G  F + A EQ + 
Sbjct: 132 DLGDQTLKRYYDAHRDQFVQAEAVHVRHILTEDEASARKALLAVLGGADFAKTAAEQSRD 191

Query: 307 LSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
            +    G       +   P  +  D +FSL K     PV    FG+ +  V   + +  +
Sbjct: 192 KATAERGGDLEWVERGQTPK-AFEDLVFSLRKDAVGGPV-KTDFGWHVVQVLEKRAARAL 249

Query: 363 SFQEVKKDIANQMRITKASEKVK 385
           SF+E K ++A +++ +   E +K
Sbjct: 250 SFEEAKGEVAQRLQRSYLEETLK 272


>gi|289435560|ref|YP_003465432.1| prsA protein, protein export protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171804|emb|CBH28350.1| prsA protein, protein export protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 295

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 11/135 (8%)

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321
           K + P+I TV  ++  ++ +A E  Q LK G+KF  LA+E     +    G     + P 
Sbjct: 132 KTWQPDI-TVSHILVADEAKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGKLAPFGPG 190

Query: 322 --DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-----ANQ 374
             D +   + ++L  KGD +  +   +GY I  +   +P+   +F + KK +      +Q
Sbjct: 191 KMDPAFEKAAYALKNKGDISDPVKTQYGYHIIQMD--EPATKTTFDKDKKAVKESYLQSQ 248

Query: 375 MRITKASEKVKEDYK 389
           +      + +K++YK
Sbjct: 249 LTTENMQKTLKKEYK 263


>gi|94502167|ref|ZP_01308665.1| peptidyl-prolyl cis-trans isomerase D [Oceanobacter sp. RED65]
 gi|94425692|gb|EAT10702.1| peptidyl-prolyl cis-trans isomerase D [Oceanobacter sp. RED65]
          Length = 608

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 67/385 (17%), Positives = 153/385 (39%), Gaps = 14/385 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+   A+I + ++ + F ++G+   +    G      V  +++       + 
Sbjct: 1   MLQAIRDGSKGIAARIIVGLIILTFALFGIESIVALGGGEDAPAEVNGEEITLLEVQQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + ++ G   +        L +  + +L+    L Q   + G+      +   I 
Sbjct: 61  NAQKTRLQRQFGENFDPAMFDENLLRQAAVRSLIDQELLAQAATESGVYISDQDIDRLIV 120

Query: 121 RSPLF--HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           +SP F  +G  +  ++D+ +  +   G     Y +   + +    V   + G    ++L 
Sbjct: 121 QSPNFQVNGAFDAATYDLTIRSM---GFTRMTYREAVRESIKTQQVQSAWQGTEFATDLE 177

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            +Q      + RS+ Y    + +       S+  +  ++E     +   E   + Y++FD
Sbjct: 178 KEQLSLLENQIRSIKYKEYKSDNFKESVQLSDEDIQSFYEANDSRFMTTESVIVDYVIFD 237

Query: 239 VHEKEKKIEISNDELQAEYEKN-KEKYFSPEIRTVEQLVFPNQKEA----DEAFQSLKKG 293
             +  +++ ++ DE+Q  Y+   +E   + E R    ++     EA     EA   L +G
Sbjct: 238 KEKLAEQVIVTEDEIQERYDAMLQESQENKEYRVAHIMLLSADDEARKTLSEAKSKLGQG 297

Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           + F  LAE   +  +    G    F+   I +   AD++ SL + G  + ++    G  +
Sbjct: 298 ESFESLAERYSEDDTSKYAGGDLGFASATIYEPEFADAVLSL-EVGAVSDIVETRDGLHL 356

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQM 375
             + + +     ++ E+K  I   +
Sbjct: 357 IKLVDTRQPEIAAYDEMKDTIEQNL 381


>gi|315283321|ref|ZP_07871537.1| foldase protein PrsA [Listeria marthii FSL S4-120]
 gi|313613042|gb|EFR86968.1| foldase protein PrsA [Listeria marthii FSL S4-120]
          Length = 292

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 6/112 (5%)

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321
           K + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     +    G   + + P 
Sbjct: 132 KTWQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDTATKENGGKLEPFGPG 190

Query: 322 --DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
             D +   + ++L  KGD +  +   +GY I  +   +P+   +F + KK +
Sbjct: 191 KMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--EPATKTTFDKDKKAV 240


>gi|309388299|gb|ADO76179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halanaerobium
           praevalens DSM 2228]
          Length = 343

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 77/148 (52%), Gaps = 16/148 (10%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE--- 301
           K+++S +E++  Y+ NK+++ S   + V  ++F +Q +A++    +K G  F ++A+   
Sbjct: 183 KVKVSEEEVKDYYQNNKKQFESEAEKKVSHILFDDQAKAEKVLAEIKAGADFAEMAKKHS 242

Query: 302 -----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVS 354
                ++G +L  +S    + E   D +  D+   L + G+ T  PV    FG+ +  V+
Sbjct: 243 TGPTADKGGNLGYVS----ANERGLDQTFRDAAMKL-EVGEITNEPV-KTQFGFHLIKVT 296

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE 382
           + + +    F+EVK  I + ++  K S+
Sbjct: 297 DYREAGVRDFEEVKAQIESNLKNKKKSQ 324


>gi|257066380|ref|YP_003152636.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus
           prevotii DSM 20548]
 gi|256798260|gb|ACV28915.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus
           prevotii DSM 20548]
          Length = 249

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 74/154 (48%), Gaps = 15/154 (9%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
           + +H+  +++ I++DE++  YE+NKE    P +     ++  + + A++    ++KG  F
Sbjct: 84  YAMHKIFEEVNINDDEIKKYYEENKETINPPILYEASHILVKDLETAEKVRGEIEKGLSF 143

Query: 297 --------IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
                   I  ++E G SL     G   KE+   +   D+I    + G+ +  +   FGY
Sbjct: 144 EDAAKKYSIDPSKENGGSLGKFPKGVMVKEFQEGL---DAI----EVGEISAPVKSQFGY 196

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            +  ++N +   T  F+E+K  +  ++ + K  E
Sbjct: 197 HLIKLTNKENVETPKFEEIKSQVGQRLIMAKRQE 230


>gi|294788198|ref|ZP_06753441.1| putative signal peptide protein [Simonsiella muelleri ATCC 29453]
 gi|294483629|gb|EFG31313.1| putative signal peptide protein [Simonsiella muelleri ATCC 29453]
          Length = 292

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 41/247 (16%)

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK---YKDNYRAPEYKRIS 233
           L++ +AKR   + +S DY         A A+       Q  +K   +K N+   +Y+   
Sbjct: 72  LVVQEAKRLKLD-KSSDYQA-------AEAEALKQAKAQGLDKQADFKQNW--ADYQNRL 121

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKK 292
            +L       K+  IS    Q +Y + K +Y  S EI+  E +V     +A+ A   L K
Sbjct: 122 LMLAYAANLAKQQPISEAAAQQQYNQIKSRYAGSSEIQLGE-IVTNKPADAEAAINDLTK 180

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYI--PDVSLADSIFSLA----KKGDF--TPVIHG 344
            KKF  +A++   S S  + G    EY+  PD+   +++   A     KG F  TPV  G
Sbjct: 181 KKKFSDVAKKYSMSKSSQTSGGIVPEYVALPDLKDGNNLVYQAVNGLSKGQFTKTPVKDG 240

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
           +   V+ +V++ +     +F E+K  I  QM                +E L+L  ++D +
Sbjct: 241 NVSLVL-YVNDKRAINVPTFNEMKASIVQQME---------------DEQLSL--AIDNL 282

Query: 405 SRREKIV 411
            ++ KIV
Sbjct: 283 GKKAKIV 289


>gi|289208891|ref|YP_003460957.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           K90mix]
 gi|288944522|gb|ADC72221.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           K90mix]
          Length = 289

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           +++EIS ++++AEYE+  E     E R    ++  ++  A E    L  G  F +LAEE 
Sbjct: 130 EELEISEEDVEAEYERQVEYLRGTEYR-ARHILVEDEDSARELLAQLDDGADFAELAEEH 188

Query: 304 ----GKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
               G +     LG F+ +  +P+ + A       +  D  PV    FG+ +  + + + 
Sbjct: 189 SIDPGSAARGGDLGWFTPDGMVPEFAAATEALEPGETTD-APV-QSQFGWHLIRLDDTRE 246

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVK 385
                  EV+ +I   +      EK++
Sbjct: 247 VEVPPLDEVRAEIIEILESRAIQEKLE 273


>gi|222100637|ref|YP_002535205.1| Basic membrane protein [Thermotoga neapolitana DSM 4359]
 gi|221573027|gb|ACM23839.1| Basic membrane protein [Thermotoga neapolitana DSM 4359]
          Length = 329

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 12/151 (7%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--QGK 305
           ++ +E Q  Y +NKE Y  P    + ++    + + DEA   ++KG+ F+++A +   G 
Sbjct: 172 VTVEEAQNYYNQNKEAYRVPAAVHLYRISAEEKGKIDEALSRIRKGEDFLEVATKVATGG 231

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
            L  I  G   K+        +S+   A +G          G+++  V   + S    F+
Sbjct: 232 DLGWIEEGELEKDL-------ESVIFEAPEGAILGPFESKGGFMLYKVVEKRASSYKKFE 284

Query: 366 EVKKDIANQMRITKASEKVKEDY--KRLEEF 394
           EVK++I N++ +++   ++  D+  K  EEF
Sbjct: 285 EVKEEIINKL-LSEKKAQIWNDWFNKTFEEF 314


>gi|291614457|ref|YP_003524614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans
           lithotrophicus ES-1]
 gi|291584569|gb|ADE12227.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans
           lithotrophicus ES-1]
          Length = 261

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 7/185 (3%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFD-VHEKEKKIEISNDELQAEYEKNKEKYFSP 267
           S A +    +K  D  +  E  R S +    V +  K   I +D LQ EYE  K +  + 
Sbjct: 74  SQAAVKNGLDKQPDVAQQLELARQSVLAGAFVQDYAKSHPIGDDVLQKEYEALKARVGNK 133

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VS 324
           E + +  ++   + EA +    LKKG KF ++A+ Q K     + G      +P      
Sbjct: 134 EYK-LSHILVGTEDEAKKIAGQLKKGAKFAKIAKAQSKDPGSKNNGGDLGWAVPSNFVQP 192

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
            A+++  L KKG+ +  +   +G+ I  + + +     +F+E+K ++  +++  +A +K 
Sbjct: 193 FAEAVAKL-KKGEVSAPVQTQYGWHIIKLEDTRELKVPTFEEMKPNLEKRLQ-QQAIQKE 250

Query: 385 KEDYK 389
            ED +
Sbjct: 251 IEDMR 255


>gi|317495597|ref|ZP_07953965.1| ppic-type ppiase domain-containing protein [Gemella moribillum
           M424]
 gi|316914411|gb|EFV35889.1| ppic-type ppiase domain-containing protein [Gemella moribillum
           M424]
          Length = 308

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 33/156 (21%)

Query: 251 DELQAEYEKNKEKYFSPEIR-TVEQLVFPN-------QKEADEAFQSLKKGKKFIQLAEE 302
           D+L+  YEKNK +Y    I  +V+    PN       +K+A+E  + +K G+ F  LA+E
Sbjct: 131 DKLKENYEKNKHQYHLAHILISVKSNSNPNGLSDEDAKKKAEELHKKIKDGEDFATLAKE 190

Query: 303 QGKSLSDISLG-----------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
                ++ S G           SF KE+       ++ ++L  K   + V+  SFGY I 
Sbjct: 191 NSNDTANASNGGDLGWSSKEDNSFVKEF------KEAAYALT-KDKVSDVVKTSFGYHII 243

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
            V + K +   +F E+K  +A +     A E VK+D
Sbjct: 244 KVLDEKDA---TFDEMKATLAEKA----AEEAVKKD 272


>gi|291286199|ref|YP_003503015.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883359|gb|ADD67059.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 318

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 22/152 (14%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE---- 301
           I+IS +EL+A YE+ K +  +     ++ +V   +K A  A   +K+G  F ++AE    
Sbjct: 156 IDISEEELKAFYEEKKNELNADVSAHIQHIVTYEEKAAQNALGLIKQGIPFSEVAEKFSV 215

Query: 302 ----EQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
               E G  L  I++  +     PD+   +LA       K G  + ++   +GY I  + 
Sbjct: 216 APEKEAGGDLGFINVNEY-----PDIFKEALA------LKTGQVSGIMKSDYGYHIFKLL 264

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            ++    +SF  +KK +  ++   K   KV+E
Sbjct: 265 EVQKKSGISFDTLKKKLYAELYGIKQENKVRE 296


>gi|325282949|ref|YP_004255490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           proteolyticus MRP]
 gi|324314758|gb|ADY25873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           proteolyticus MRP]
          Length = 652

 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 68/137 (49%), Gaps = 16/137 (11%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           + +++++++LQA Y++ ++++ +P    V +  FP++++A  AF+   +G  F Q A   
Sbjct: 424 RNVKVTDEDLQAAYQERQQQFQTPASAVVSEATFPSREQA-LAFRQDWQGGDFTQAATAA 482

Query: 304 GKSLSDISLGSFSKEYIPDVSLAD-----SIF--SLAKKG--DFTPVIHGSFGYVIAHVS 354
           G  +S+        +  PD  L +     SIF   L   G    T ++  S G+ +  V+
Sbjct: 483 GGIVSE------RGQVAPDTDLMEPSVLQSIFEGELRAVGSTSLTNIVQASDGWKVVAVT 536

Query: 355 NIKPSFTVSFQEVKKDI 371
           +++    +   EV+  +
Sbjct: 537 DLQQGRVLPLDEVRTSL 553


>gi|225850985|ref|YP_002731219.1| ppic-type ppiase domain protein [Persephonella marina EX-H1]
 gi|225646600|gb|ACO04786.1| ppic-type ppiase domain protein [Persephonella marina EX-H1]
          Length = 325

 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 80/164 (48%), Gaps = 20/164 (12%)

Query: 246 IEISNDELQAEYEKNKEKYFSP---EIRTVEQLVFPN--------QKEADEAFQSLKKGK 294
           + +++ +L+  YEKNK+K+  P   ++R +   V P+        +++A +A++ +K+GK
Sbjct: 153 VSLTDKDLKEYYEKNKDKFKEPASVKVRYIYIKVDPSDPKGREKAREKAKKAYKEIKEGK 212

Query: 295 KFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F  +A      LS I    +G   K   P   + + I+ L   G  + +I    G  I 
Sbjct: 213 DFGDVAYRYSDDLSRIKGGDIGYVHKGRFPK-QIEEEIYKLD-VGQVSKIIETDTGLHIV 270

Query: 352 HVSNIKPSFTVSFQEV----KKDIANQMRITKASEKVKEDYKRL 391
            + + +P   V ++E+    KK++   M+  K +E +K+  K L
Sbjct: 271 KIEDKRPPRLVPYEEIKDKLKKELTEVMQERKFNELIKDAKKNL 314


>gi|169343240|ref|ZP_02864251.1| putative foldase protein PrsA [Clostridium perfringens C str.
           JGS1495]
 gi|169298538|gb|EDS80619.1| putative foldase protein PrsA [Clostridium perfringens C str.
           JGS1495]
          Length = 326

 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 89/178 (50%), Gaps = 13/178 (7%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKKGK-------- 294
           K +++++++ Q  Y++NK+++ + +   + + L+F N++EA +A+  ++ GK        
Sbjct: 149 KDVKVTDEDAQKYYDENKQQFVAKDSGVLTKHLLFENEEEAQKAYDEIQSGKTTFNDLFT 208

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVIHGSFGY-VIAH 352
           K+     E  K +++ +LG    E    V    D +  L K+G+ + +I   FGY +I  
Sbjct: 209 KYENNKSENKKPIAE-NLGVVPAENSGLVQEFVDGLKPL-KEGEISKLIKTQFGYHIIQA 266

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
            +  +    + F EVK  I   ++  K SEK K D  + ++ L +    D++    KI
Sbjct: 267 GATYEKGAQLPFDEVKSQIIQILKQQKDSEKFKADMDQWKKDLNVKVYDDKLQEGLKI 324


>gi|206603474|gb|EDZ39954.1| Putative peptidyl-prolyl cis-trans isomerase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 324

 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 10/112 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA---DS 328
           V+ +V   Q+EA+    +L KG  F +LA+ +   + + S G   K Y P  ++    D+
Sbjct: 176 VDHIVVAKQEEAESIRDALLKGSSFGKLAKLESLGM-EASSGGRMKPY-PQGTMPPPFDT 233

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE----VKKDIANQMR 376
           +F++ K G+ +PV+  S+GY +  +    P  T+ F      +KK +  + R
Sbjct: 234 VFTM-KPGEISPVLSSSYGYHLFRLEKFIPKHTLPFSMEKNWIKKKLTREKR 284


>gi|39997591|ref|NP_953542.1| hypothetical protein GSU2496 [Geobacter sulfurreducens PCA]
 gi|39984483|gb|AAR35869.1| hypothetical protein GSU2496 [Geobacter sulfurreducens PCA]
          Length = 571

 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           ++++ DEL+A YE +K +Y  P +  ++ + F +Q  A  A + L++G  F    E    
Sbjct: 409 VKVTEDELKAYYEAHKSEYSYPIMVVLDGIAFNDQNAAQSAAEKLRQGMDFKWFKENAEG 468

Query: 306 SLSDISLGSFSKEYIPDVSLA------DSIFSLAKKGDFTPVIH-GSFGYVIAHVSNIKP 358
            +   + G    E +P V+L       + + + A+ G++        F YVI  V N+ P
Sbjct: 469 HVDAKAAGVLQFEDVP-VTLKTLPEGLNKVITGAQTGEYRVYSDPNGFTYVIL-VRNVIP 526

Query: 359 SFTVSFQEVKKDI 371
               SF EV+  I
Sbjct: 527 EQVQSFPEVEATI 539


>gi|308275078|emb|CBX31677.1| hypothetical protein N47_E51890 [uncultured Desulfobacterium sp.]
          Length = 316

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 19/137 (13%)

Query: 269 IRTVEQLVFPNQKE----ADEAFQSLKKGKKFIQLAEE--------QGKSLSDISLGSFS 316
           IRT  +   P ++E    A++  + +K+GK F  +A E        +G  L  I +G   
Sbjct: 169 IRTDPKWDAPRKQEERRKAEQILKDIKQGKDFAVIAGEHSDGPTKTKGGDLGYIKMGQL- 227

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
                D  L D++F L K G+ + ++    G+ I   ++ KP   +S+++VK+ I   + 
Sbjct: 228 -----DNKLEDAVFKL-KTGELSNIVETDNGFHIFKATDKKPETVLSYEDVKEKIRQFLH 281

Query: 377 ITKASEKVKEDYKRLEE 393
             KA  +  +   +L E
Sbjct: 282 EEKAKREADQQAGKLRE 298


>gi|319790649|ref|YP_004152282.1| hypothetical protein Theam_1685 [Thermovibrio ammonificans HB-1]
 gi|317115151|gb|ADU97641.1| hypothetical protein Theam_1685 [Thermovibrio ammonificans HB-1]
          Length = 428

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 25/139 (17%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           E EK I+++++E +A YEKNKE++  P+        F +++ A EA + L          
Sbjct: 263 ELEKGIKVTDEEAKAFYEKNKERFKMPDRVKAVVFYFKSKERALEAKKML---------- 312

Query: 301 EEQGKSLSDIS--LGSF-SKEYIPDVSLADSIFSLA------KKGDFTPVIHGSFG--YV 349
            E GKS  D++  LG F +KE        D I +L       KKG    V    FG  YV
Sbjct: 313 -ESGKSWQDVARRLGQFNAKEKFYYRDPKDPIGALVFMNGNPKKGQ---VFVADFGGKYV 368

Query: 350 IAHVSNIKPSFTVSFQEVK 368
             +V    P   + ++EVK
Sbjct: 369 TVYVEKFVPGGVLPYKEVK 387


>gi|260682966|ref|YP_003214251.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196]
 gi|260686564|ref|YP_003217697.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291]
 gi|296451354|ref|ZP_06893092.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
 gi|296880296|ref|ZP_06904261.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
 gi|260209129|emb|CBA62320.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196]
 gi|260212580|emb|CBE03572.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291]
 gi|296259770|gb|EFH06627.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
 gi|296428739|gb|EFH14621.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
          Length = 261

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           + ++ DE    +E NK  +  PE  T + ++  + ++A E    +K  +   + A  +  
Sbjct: 102 VNVTEDEKVKFFEANKSSFSKPESATAKHILVDSDEKAKEILAQIKSEEISFEDAALKHS 161

Query: 306 SL--SDIS--LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           S    D+   LG+F + + +P+    +++FS+A KG+ +  +   FGY I  + +++ S 
Sbjct: 162 SCPSKDMGGDLGTFGRGQMVPE--FEEAVFSMA-KGEVSEPVKTQFGYHIIKLEDLQEST 218

Query: 361 TVSFQEVKKDIANQMRITKASE 382
             +F EVK ++   +   K +E
Sbjct: 219 ESTFDEVKAEVEKSLLYQKQNE 240


>gi|315304396|ref|ZP_07874697.1| peptidylprolyl isomerase PrsA1 [Listeria ivanovii FSL F6-596]
 gi|313627234|gb|EFR96066.1| peptidylprolyl isomerase PrsA1 [Listeria ivanovii FSL F6-596]
          Length = 245

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 11/135 (8%)

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321
           K + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     +    G     + P 
Sbjct: 82  KTWQPDI-TVSHILVADEAKAKEVEQKLKDGAKFADLAKEYSTDTATKDNGGELAPFGPG 140

Query: 322 --DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-----ANQ 374
             D +   + ++L  KGD +  +   +GY I  +   KP+   ++ + KK +      +Q
Sbjct: 141 KMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTYDKDKKAVKESYLQSQ 198

Query: 375 MRITKASEKVKEDYK 389
           +      + +K++YK
Sbjct: 199 LTTENMQKTLKKEYK 213


>gi|302337922|ref|YP_003803128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635107|gb|ADK80534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 357

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 121/306 (39%), Gaps = 75/306 (24%)

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
           L  ++L++L+    L Q  +  G EAD  +V  ++ +      K    S + +   LA++
Sbjct: 101 LKGQVLESLIDQELLAQEAKGQGYEADQTKVDQQLQQI-----KGQFPSEEQYYQALAQQ 155

Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL--DQAKRFYFENRSVDYIVLNNRHV 202
           GI+E++++    K L    VV  FV     S + +  + +K +Y +N S  Y V      
Sbjct: 156 GISEQDFLAELKKSL----VVQQFVSDRFASQVAVTEEDSKTYYDDNPS--YFV------ 203

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                                   PE  R S+ILF V E                     
Sbjct: 204 -----------------------QPERVRASHILFSVAED-------------------- 220

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--QGKSLSDIS-LGSFSKEY 319
                     +Q V   + +A+ A +  K G++F  LA E  +G S S    LG F +  
Sbjct: 221 --------ASDQDVAAAKTKAESALERYKNGEEFSDLARELSEGPSASQGGDLGFFGRNQ 272

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           +      D+ FS+ K G+ +  +   FG+ +  ++      T+ F +VK  I++ +   +
Sbjct: 273 MVK-PFEDAAFSM-KVGEVSDPVRTKFGFHLIRLTARNEKGTLPFDQVKPQISDHLYKLR 330

Query: 380 ASEKVK 385
             E VK
Sbjct: 331 LGELVK 336


>gi|251772783|gb|EES53345.1| probable peptidyl-prolyl cis-trans isomerase [Leptospirillum
           ferrodiazotrophum]
          Length = 289

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE-Q 303
           K+++++ ++Q  ++K++++   P    V QL+ P+QK AD    SL+K K F +  E+ +
Sbjct: 124 KVKVTDADVQGYFDKHRQEIKQPGYVEVRQLIIPDQKTADRIVSSLRKKKGFSRAIEKFK 183

Query: 304 GKSLSDISLGSFSKEY 319
           G  +  I  G+   ++
Sbjct: 184 GGPVGKIFEGTVPPQF 199


>gi|171463604|ref|YP_001797717.1| hypothetical protein Pnec_0905 [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193142|gb|ACB44103.1| conserved hypothetical protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 482

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 53/258 (20%), Positives = 104/258 (40%), Gaps = 34/258 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M + +RK  R  + +  L++L VP F  +G+S     +   + +V V  + +        
Sbjct: 1   MFDTVRKHQR--ILQFVLMLLIVPSFAFFGVSSYSSFLDKETDLVKVNGKSI-------- 50

Query: 60  WKQELGMISQKIGFVV--NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             QE+ M +++    V  N + A+S+   + IL+ L+    L   + D+ L+     +  
Sbjct: 51  TAQEVDMAAKRQAERVGGNVQIAQSLQFRQAILNELLQQRILGFAVSDLRLQVGKEALVK 110

Query: 118 EIARSP---LFHGKDNKFSHDVFVSRLAREGINEKEY---------IDHYTKMLSRTDVV 165
            +   P     + +D  F    F   LA  G+NE ++         I      ++RT++ 
Sbjct: 111 SLQNIPQIRALYKQDGSFDDARFKQLLASNGLNEGQFYAGQAFDLKISQLVNSVARTEI- 169

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
               G  + S ++       Y   R V  +  + +   +  +PS   L  ++      + 
Sbjct: 170 ----GSPKLSEIV----STLYEMERQVQIMPFDAKDYLSKVNPSQEELQAFYAANSKLFE 221

Query: 226 APEYKRISYILFDVHEKE 243
           +PEY  + YI+     KE
Sbjct: 222 SPEYVDVEYIVLKADSKE 239


>gi|153005189|ref|YP_001379514.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028762|gb|ABS26530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 342

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 14/149 (9%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPE---IRTVEQLVFPNQKEADEAFQS-------- 289
           E++ +   S+ EL+A Y+ +  +   PE   +R V   V P    +D             
Sbjct: 163 EEKARGSASDAELRAWYDSHGAELAQPERLRVRRVLAKVDPGASRSDRERARERAERFAG 222

Query: 290 -LKKGKKF--IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            L+ G++F  + ++ +  +      LG   +    D  L  + F L   G  +PVI  + 
Sbjct: 223 RLRAGERFEAVAVSGDGPERARGGDLGLIGRGDGKDARLESAAFELPAVGARSPVIELTD 282

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           G+ +  +   +P    SF+E + +++N++
Sbjct: 283 GFAVLELIERRPGRVPSFEEARGEVSNRL 311


>gi|329769980|ref|ZP_08261377.1| hypothetical protein HMPREF0433_01141 [Gemella sanguinis M325]
 gi|328837540|gb|EGF87167.1| hypothetical protein HMPREF0433_01141 [Gemella sanguinis M325]
          Length = 311

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 15/133 (11%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIR-TVEQLVFPN-------QKEADEAFQSLKKGKKFIQL 299
           I+ D+L+  YEKNK +Y    I  +V+    PN       +K+A+E  + +K G  F  L
Sbjct: 129 ITEDKLKESYEKNKHQYHLAHILISVKSSSNPNGLSDEEAKKKAEEVLKKIKDGGDFATL 188

Query: 300 AEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A+E      + S    LG  SKE    VS  ++      K   + V+   FGY I  V +
Sbjct: 189 AKEYSNDTGNASNGGDLGWSSKEDNSYVSEFNNAAYALNKDQVSDVVKTPFGYHIIKVLD 248

Query: 356 IKPSFTVSFQEVK 368
            K S   S+ E+K
Sbjct: 249 TKDS---SYDELK 258


>gi|227484925|ref|ZP_03915241.1| possible peptidylprolyl isomerase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227237080|gb|EEI87095.1| possible peptidylprolyl isomerase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 248

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK--- 305
           ++D+L+  YE NKE     +  T   ++  +  +A++ ++ +K G  F + A++  K   
Sbjct: 95  TDDDLKKYYEDNKELISPNKTYTASHILVDDIDKANKIYEEIKLGLDFKEAAKKYSKDPS 154

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           + S  SLG+F K  +      D + SL + G+ +  +   FGY I  + +I+     +F 
Sbjct: 155 AASGGSLGTFPKGVMVK-EFQDGLDSL-EIGEISKPVKSQFGYHIIKLEDIQNEEPKAFD 212

Query: 366 EVKKDIANQMRITKASEKVKEDYKRL 391
           EVK+ +     + K  EK  E  K +
Sbjct: 213 EVKEQVYQTYLMVKRQEKYLEKLKEI 238


>gi|222056243|ref|YP_002538605.1| hypothetical protein Geob_3161 [Geobacter sp. FRC-32]
 gi|221565532|gb|ACM21504.1| conserved hypothetical protein [Geobacter sp. FRC-32]
          Length = 580

 Score = 39.3 bits (90), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 20/161 (12%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL-AEEQ 303
           +I+++++E++A Y    +++  PE+  +  L F  +  A+ A + L+KG ++  L A  +
Sbjct: 414 EIKVTDEEIKAHYNAEIDEFSLPEMLKLRGLAFTRKDFAEAAMEKLQKGTEYQWLQANAE 473

Query: 304 GKSLSDI-SLGSFSKEYIPDVSLADSI---FSLAKKGDF----TPVIHGSFGYVIAHVSN 355
           G    D   L SFS+  +   SL + +    + AK G++    TP     F YVI  V  
Sbjct: 474 GLVPGDTEGLMSFSQTPVTRKSLPEKMQEAIAAAKPGEYRLFETP---EGFVYVI-QVQE 529

Query: 356 IKPSFTVSFQEVKKDIANQM---RITKASE----KVKEDYK 389
           + P+     ++VK+ I  ++   ++ K+ E    K++E YK
Sbjct: 530 VIPAKPQPLEQVKQSITKEVFNQKLNKSVEDWGQKLREAYK 570


>gi|225163766|ref|ZP_03726066.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
 gi|224801636|gb|EEG19932.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
          Length = 568

 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 23/180 (12%)

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
           R+  +  SVDY   +    PA+    +  L ++FE     Y+ P   +I YI F    + 
Sbjct: 192 RWTLDVASVDYASFS----PAVKVGED-TLKKYFEDNALRYQIPAKVQIRYIDFPTSARL 246

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------FQSLKKGKKFI 297
            +  +++DE +  Y  N  + F P  +T    + P    A  A      F ++K   + I
Sbjct: 247 AETSVTDDEAREYYLANTHRSFKPADKTKTPDLLPKTTPATSAEDKNADFDAVK--TQVI 304

Query: 298 QLAEEQ------GKSLSDISLGSFSKEY-IPDVS--LADSIFSLAKKGDFTPV-IHGSFG 347
           Q   EQ       K+ +DISL  F+++  + D+   + D+  +L     F P  + G FG
Sbjct: 305 QTLREQKAQRLTAKAAADISLALFNQKVALKDLPAFVKDNNLTLKDVAPFPPQNVPGIFG 364


>gi|319793857|ref|YP_004155497.1| ppic-type peptidyL-prolyl cis-trans isomerase [Variovorax paradoxus
           EPS]
 gi|315596320|gb|ADU37386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           EPS]
          Length = 261

 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           LFD + K   +  S+ +++AEY+K        E +    ++   + +A +    LKKG K
Sbjct: 103 LFDNYRKTNPV--SDADVKAEYDKFVAANGGKEYKA-RHILVETEDQAKKIMADLKKGAK 159

Query: 296 FIQLAEEQGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYV 349
           F  +A++Q K     + G     +    ++P+ S  +++  L KKG+ TP  I   FGY 
Sbjct: 160 FEDIAKKQSKDPGSGANGGDLDWANPASFVPEFS--EAMIKL-KKGETTPAPIKTQFGYH 216

Query: 350 IAHVSNIKPSFTVSFQEVK 368
           I  V +I+ +     +EVK
Sbjct: 217 IIRVDDIRQAQLPKLEEVK 235


>gi|126698956|ref|YP_001087853.1| putative peptidyl-prolyl isomerase [Clostridium difficile 630]
 gi|254974902|ref|ZP_05271374.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-66c26]
 gi|255092291|ref|ZP_05321769.1| putative peptidyl-prolyl isomerase [Clostridium difficile CIP
           107932]
 gi|255100375|ref|ZP_05329352.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-63q42]
 gi|255306317|ref|ZP_05350488.1| putative peptidyl-prolyl isomerase [Clostridium difficile ATCC
           43255]
 gi|255314029|ref|ZP_05355612.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-76w55]
 gi|255516709|ref|ZP_05384385.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-97b34]
 gi|255649808|ref|ZP_05396710.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-37x79]
 gi|255655366|ref|ZP_05400775.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-23m63]
 gi|306519909|ref|ZP_07406256.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-32g58]
 gi|115250393|emb|CAJ68215.1| putative peptidyl-prolyl isomerase [Clostridium difficile]
          Length = 251

 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           + ++ DE    +E NK  +  PE  T + ++  + ++A E    +K  +   + A  +  
Sbjct: 92  VNVTEDEKVKFFEANKSSFSKPESATAKHILVDSDEKAKEILAQIKSEEISFEDAALKHS 151

Query: 306 SL--SDIS--LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           S    D+   LG+F + + +P+    +++FS+A KG+ +  +   FGY I  + +++ S 
Sbjct: 152 SCPSKDMGGDLGTFGRGQMVPE--FEEAVFSMA-KGEVSEPVKTQFGYHIIKLEDLQEST 208

Query: 361 TVSFQEVKKDIANQMRITKASE 382
             +F EVK ++   +   K +E
Sbjct: 209 ESTFDEVKAEVEKSLLYQKQNE 230


>gi|157362935|ref|YP_001469702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga lettingae
           TMO]
 gi|157313539|gb|ABV32638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga lettingae
           TMO]
          Length = 343

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 70/147 (47%), Gaps = 20/147 (13%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           ++ +E +  YE+N+E +   E   + ++   ++++AD+A + ++ G++F Q+A       
Sbjct: 173 VTEEEARQFYEQNREYFAVEEAAKLLRITVDSKEKADKALERIRAGEEFSQVA------- 225

Query: 308 SDISLGSFSKEYIPDVS------------LADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           SD+S    SK    D+             + + IF ++ KG     +  S G+ I  + +
Sbjct: 226 SDVSTDPLSKGKAGDLGWVERGSGLISEEIEEKIF-VSPKGAILGPLQTSVGWEIYRIID 284

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASE 382
            +P    +F++V  DI   +   KA +
Sbjct: 285 KRPKGYENFEDVVNDIYQHLIQQKAQQ 311


>gi|237747325|ref|ZP_04577805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter
           formigenes HOxBLS]
 gi|229378676|gb|EEO28767.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter
           formigenes HOxBLS]
          Length = 259

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 22/144 (15%)

Query: 244 KKIEISNDELQAEYEK-----NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           KK  +S+ E++AEY++     N ++Y       V+ ++  N+ +A      L KG  F +
Sbjct: 107 KKNPVSDKEIKAEYDRVASLQNGQQYH------VKHILVKNEADAQNIINQLNKGANFEK 160

Query: 299 LAEE----QGKSL--SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIA 351
           +A+E    QG +    D+S  S S    P    +D++ +L KKG  T   +   FGY I 
Sbjct: 161 IAKEKSIDQGSAARGGDLSWASPSNYIKP---FSDAMIAL-KKGQITKTPVKTQFGYHII 216

Query: 352 HVSNIKPSFTVSFQEVKKDIANQM 375
            + +++ +   S  +VK  I   +
Sbjct: 217 KLVDVRKATLPSLNQVKPKIKTSL 240


>gi|153854234|ref|ZP_01995542.1| hypothetical protein DORLON_01534 [Dorea longicatena DSM 13814]
 gi|149753283|gb|EDM63214.1| hypothetical protein DORLON_01534 [Dorea longicatena DSM 13814]
          Length = 245

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 20/153 (13%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEE-- 302
           + +++DE++  YE NK KY        + ++  N+++  E   ++  G+K F  +A+E  
Sbjct: 92  VNVTDDEIKEYYEANKSKYSKGASVHAKHILVDNEEKCTELLNAITSGEKVFEDVAKESS 151

Query: 303 ------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
                  G  L +   G   KE+       D+ F+ A+ G     +   FGY +  V + 
Sbjct: 152 TCPSGANGGDLGEFGRGQMVKEF------EDAAFA-AEVGHVVGPVKTQFGYHLIKVEDK 204

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           K +   S +EVK    +Q+R   + +K +E Y+
Sbjct: 205 KEAGESSLEEVK----DQIRAELSQKKQEEAYR 233


>gi|254560598|ref|YP_003067693.1| cell-binding factor 2 [Methylobacterium extorquens DM4]
 gi|254267876|emb|CAX23742.1| putative cell-binding factor 2 precursor (Major antigen peb4A),
           cbf2 [Methylobacterium extorquens DM4]
          Length = 300

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 19/177 (10%)

Query: 226 APEYKR-ISY-----ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           APE+KR ++Y     +L D  E+E K  ++ +  +A YE+  +     E      ++  +
Sbjct: 108 APEFKRKLAYFRDKLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVES 167

Query: 280 QKEADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
           + EA +    +K G+ F ++A E     G       LG FS+E +     AD+ F +A  
Sbjct: 168 EDEAKKIAARVKGGEDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVK-PFADAAFKMA-P 225

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-------ANQMRITKASEKVK 385
           G  +  +   FG+ +  V   +     +F E+K+ I       A Q  I K  E  K
Sbjct: 226 GQVSDPVKTQFGWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAK 282


>gi|118475291|ref|YP_891759.1| putative peptidyl-prolyl cis-trans isomerase D,-like protein
           [Campylobacter fetus subsp. fetus 82-40]
 gi|118414517|gb|ABK82937.1| putative peptidyl-prolyl cis-trans isomerase D, homolog
           [Campylobacter fetus subsp. fetus 82-40]
          Length = 485

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 6/162 (3%)

Query: 1   MLEIIRKASRTWVAKIFL-VVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++K  +  V  I++  + FV   F+ WG  D   + + +++V  VG + +    F 
Sbjct: 1   MLTWMQKHKKYLVVTIWISTIAFVGAGFVGWGAYD--LNSNRATSVAKVGNRNITIQEFQ 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++       S         E+A  +GLD+  L  L+       +++DIGL      +  
Sbjct: 59  KTYSNLYNYYSSLSEGKFTQEQADEMGLDRIALQRLIQENLFLNYVDDIGLMVSKEELIA 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            +     F   D KF    +   L R  I  K++ +  T  L
Sbjct: 119 ALTSDEGFQV-DGKFDKSRYEDTLKRARITPKDFENELTNKL 159


>gi|16803484|ref|NP_464969.1| hypothetical protein lmo1444 [Listeria monocytogenes EGD-e]
 gi|47095395|ref|ZP_00233005.1| protein export protein [Listeria monocytogenes str. 1/2a F6854]
 gi|224499704|ref|ZP_03668053.1| hypothetical protein LmonF1_08419 [Listeria monocytogenes Finland
           1988]
 gi|224501615|ref|ZP_03669922.1| hypothetical protein LmonFR_03702 [Listeria monocytogenes FSL
           R2-561]
 gi|254827732|ref|ZP_05232419.1| rotamase [Listeria monocytogenes FSL N3-165]
 gi|254829797|ref|ZP_05234452.1| hypothetical protein Lmon1_00510 [Listeria monocytogenes 10403S]
 gi|254898390|ref|ZP_05258314.1| hypothetical protein LmonJ_01205 [Listeria monocytogenes J0161]
 gi|254912118|ref|ZP_05262130.1| protein export protein [Listeria monocytogenes J2818]
 gi|254936446|ref|ZP_05268143.1| rotamase [Listeria monocytogenes F6900]
 gi|284801831|ref|YP_003413696.1| hypothetical protein LM5578_1586 [Listeria monocytogenes 08-5578]
 gi|284994973|ref|YP_003416741.1| hypothetical protein LM5923_1538 [Listeria monocytogenes 08-5923]
 gi|46396979|sp|Q8Y759|PRSA1_LISMO RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|16410873|emb|CAC99522.1| lmo1444 [Listeria monocytogenes EGD-e]
 gi|47016216|gb|EAL07139.1| protein export protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258600111|gb|EEW13436.1| rotamase [Listeria monocytogenes FSL N3-165]
 gi|258609038|gb|EEW21646.1| rotamase [Listeria monocytogenes F6900]
 gi|284057393|gb|ADB68334.1| hypothetical protein LM5578_1586 [Listeria monocytogenes 08-5578]
 gi|284060440|gb|ADB71379.1| hypothetical protein LM5923_1538 [Listeria monocytogenes 08-5923]
 gi|293590088|gb|EFF98422.1| protein export protein [Listeria monocytogenes J2818]
          Length = 294

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 9/121 (7%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            + Y L      E  +++S  +L+A Y     K + P+I TV  ++  ++  A E    L
Sbjct: 105 NLEYNLLVQKATEANMDVSESKLKAYY-----KTWEPDI-TVRHILVDDEATAKEIQTKL 158

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347
           K G+KF  LA+E     +  + G     + P   D +   + ++L  K D + ++  ++G
Sbjct: 159 KNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALENKDDVSGIVKSTYG 218

Query: 348 Y 348
           Y
Sbjct: 219 Y 219


>gi|145525751|ref|XP_001448692.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124416247|emb|CAK81295.1| unnamed protein product [Paramecium tetraurelia]
          Length = 481

 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 67/129 (51%), Gaps = 19/129 (14%)

Query: 185 FYFENRSVDYIVLNNRHVPAIA--DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
           +YF+    DY +++    P I+  D +N  L Q+F  +   + +P+Y  I +++ D H  
Sbjct: 309 YYFK----DYFIIDTDPPPNISVTDFNNISLNQYFRAF---FNSPKYSDIIFVVEDKHLY 361

Query: 243 EKKIEISNDEL-----QAEYEKNKEKYFSPEI--RTVEQL---VFPNQKEADEAFQSLKK 292
             KI +S  E+     + EY+  ++K +  +   +  EQL   ++    + D+  QS++ 
Sbjct: 362 AHKIVLSRYEMFKKMFEWEYKNQQQKVYINDCSNQIFEQLLYFIYAGDLQCDQFQQSVEF 421

Query: 293 GKKFIQLAE 301
            ++F+QLA+
Sbjct: 422 YRQFLQLAD 430


>gi|85705703|ref|ZP_01036800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp. 217]
 gi|85669693|gb|EAQ24557.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp. 217]
          Length = 304

 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 11/155 (7%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT---VEQLVFPNQKEAD 284
           E +R + +  DV E     +++ + LQA Y+    +Y   E +T      ++   ++EA 
Sbjct: 117 ENERRAVLAADVAEGVVNADMTEERLQAAYDA---QYAGQEDQTEYKAAHILVETEEEAQ 173

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK---GDFTPV 341
           +    L+ G  F  LA+E     S  S G     +  D  +    F+       GD +  
Sbjct: 174 KLVAELEGGANFAALAQEHSTGPSGPSGGDLG--WFGDGVMVPEFFAAVAALEVGDVSAP 231

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           +   FG+ +  ++  +     +   V++D+AN +R
Sbjct: 232 LQTQFGWHVIQLNETRVKERPTLDAVREDLANTLR 266


>gi|269925897|ref|YP_003322520.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789557|gb|ACZ41698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 398

 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 9/83 (10%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSL 325
           V  ++   +++A+E  + L++GKKF  +A+E  KS+ D +      LG ++   I + S 
Sbjct: 255 VRHILVSTKQQAEEVIKELRQGKKFEVIAKE--KSIDDQTKLKGGDLG-WAPRGIYEKSF 311

Query: 326 ADSIFSLAKKGDFTPVIHGSFGY 348
            D+ F+L K G  +P +  S+G+
Sbjct: 312 EDAAFALTKVGQISPPVQTSYGW 334


>gi|18311465|ref|NP_563399.1| peptidylprolyl isomerase [Clostridium perfringens str. 13]
 gi|46396974|sp|Q8XHK0|PRSA_CLOPE RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|18146149|dbj|BAB82189.1| probable protein export protein [Clostridium perfringens str. 13]
          Length = 342

 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 88/178 (49%), Gaps = 13/178 (7%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKKGK-------- 294
           K +++++++ Q  Y++NK+++ + +   + + L+F N++EA +A+  ++ GK        
Sbjct: 165 KDVKVTDEDAQKYYDENKQQFVAKDSGVLTKHLLFENEEEAQKAYDEIQSGKTTFNDLFT 224

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVIHGSFGY-VIAH 352
           K+     E  K +++ +LG    E    V    D +  L K+G+ +  I   FGY +I  
Sbjct: 225 KYQNNKSENKKPIAE-NLGVVPAENSGLVQEFVDGLKPL-KEGEISKPIKTQFGYHIIQA 282

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
            +  +    + F EVK  I   ++  K SEK K D  + ++ L +    D++    KI
Sbjct: 283 GATYEKGAQLPFDEVKSQIIQILKQQKDSEKFKADMDQWKKDLNVKVYDDKLQEGLKI 340


>gi|255026336|ref|ZP_05298322.1| hypothetical protein LmonocytFSL_08280 [Listeria monocytogenes FSL
           J2-003]
          Length = 247

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 9/121 (7%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            + Y L      E  +++S  +L+A Y     K + P+I TV  ++  ++  A E    L
Sbjct: 58  NLEYNLLVQKATEANMDVSESKLKAYY-----KTWEPDI-TVRHILVDDEATAKEIQTKL 111

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347
           K G+KF  LA+E     +  + G     + P   D +   + ++L  K D + ++  ++G
Sbjct: 112 KNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALENKDDVSGIVKSTYG 171

Query: 348 Y 348
           Y
Sbjct: 172 Y 172


>gi|225872709|ref|YP_002754166.1| peptidylprolyl cis-trans isomerase, putative [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793467|gb|ACO33557.1| peptidylprolyl cis-trans isomerase, putative [Acidobacterium
           capsulatum ATCC 51196]
          Length = 660

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 188 ENRSVDYIVLNNRHVPAIADP-SNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           E RS+ YI   +  +P  A   ++A + Q++  ++D Y+ PE  ++ +IL  V
Sbjct: 240 ETRSIQYIAFQDSQIPGGAPQVTDAEIQQYYNAHQDQYKVPEEVKVRHILIQV 292


>gi|251795790|ref|YP_003010521.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
 gi|247543416|gb|ACT00435.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
          Length = 343

 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 104/244 (42%), Gaps = 32/244 (13%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN--RHVPAIAD------PSNAV 212
           R D      GG RP + L  QA +   E +++  + + N      + AD       +N  
Sbjct: 71  RKDYWTSAFGGERPIDRLKKQAMKDAVEGKTLQLLAVENGLAESSSFADFTRNWNDNNQS 130

Query: 213 LTQWFEKYKDNYRAPEYK-------RISYILFDVHEK--EKKIEISNDELQAEYEKNKEK 263
             +  ++ K  Y   EY         IS +  D+ EK  E+++++++ EL   Y+ + E 
Sbjct: 131 RAKDLKQGKAIYGLGEYDLSQFYFYSISNLKLDLAEKLGERELKVTDQELLDRYQSHAE- 189

Query: 264 YFSPEIR-TVEQLVFP--------NQKEADEAFQSLKKGKKFIQLAE---EQGKSLSDIS 311
            F+ + + T ++L  P          K+  EA Q LK G  F + A+   E G   + + 
Sbjct: 190 -FAGQTQLTYKELSIPFGDGEREQAYKQITEAQQELKAGLSFEEAAKKYTENGLRDNTVI 248

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           +G        D  L  +   L + G+++PV+    G+ I  + N   +F+V    VK  +
Sbjct: 249 IGGQDSPLQADAVLKQAAARL-EIGEYSPVLDCGSGFSIIRLVNRTDNFSVPLDSVKAQL 307

Query: 372 ANQM 375
             ++
Sbjct: 308 QEEV 311


>gi|323490390|ref|ZP_08095605.1| foldase protein PrsA [Planococcus donghaensis MPA1U2]
 gi|323396060|gb|EGA88891.1| foldase protein PrsA [Planococcus donghaensis MPA1U2]
          Length = 288

 Score = 38.5 bits (88), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 8/131 (6%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           IEI+++++   +E+NKE +          ++   Q+EADE    L  G  F +LA E   
Sbjct: 129 IEITDEQISTYFEENKETFAQASKVEANHILVETQEEADEVKAKLDDGDDFAELAAEYSV 188

Query: 306 SLSDI----SLGSF-SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
             S+     +LG F + E  P+    ++ FSL K  + +  +   +G+ I  V+    + 
Sbjct: 189 DTSNAEDGGALGEFGAGEMTPE--FEEAAFSL-KVDEISDPVETDYGFHIIQVTGKTEAT 245

Query: 361 TVSFQEVKKDI 371
             + ++ K+ I
Sbjct: 246 EANLEDSKEQI 256


>gi|148269160|ref|YP_001243620.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
           petrophila RKU-1]
 gi|170287822|ref|YP_001738060.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga sp. RQ2]
 gi|281411458|ref|YP_003345537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
           naphthophila RKU-10]
 gi|147734704|gb|ABQ46044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
           petrophila RKU-1]
 gi|170175325|gb|ACB08377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga sp. RQ2]
 gi|281372561|gb|ADA66123.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
           naphthophila RKU-10]
          Length = 329

 Score = 38.5 bits (88), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 16/152 (10%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--QGK 305
           ++ +E Q  Y +NKE Y  P    + ++   ++ + DEA   ++KG+ F+++A +   G 
Sbjct: 172 VTLEEAQNYYNQNKETYRIPAAVHLYRITTEDKSKMDEALSKIRKGEDFLEVATQVATGG 231

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
            L  I  G   K+        +S+   A +G           +V+  V   + S    F+
Sbjct: 232 DLGWIEEGKLEKDI-------ESVIFDAPEGAILGPFESEGKFVLYKVVEKRSSSYKKFE 284

Query: 366 EVKKDIANQMRITKASE-------KVKEDYKR 390
           EVK++I +++   K ++       KV E++K+
Sbjct: 285 EVKQEIMDKLLADKKNQLWNDWFNKVFEEFKK 316


>gi|167586945|ref|ZP_02379333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ubonensis Bu]
          Length = 259

 Score = 38.5 bits (88), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 14/140 (10%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE- 302
           KK + ++ E++A Y++  +   + E+  +  ++  N+++A +    +K G KF  LA++ 
Sbjct: 107 KKNQPTDAEVKARYDELVKGAANRELH-LHHILVDNEQQAKDLIAKIKAGAKFEDLAKQY 165

Query: 303 -----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSN 355
                 GK+  D+      K Y+P+ + A +     +KG  T  PV    FG+ I  V +
Sbjct: 166 SKDPGSGKNGGDLDWAD-PKAYVPEFAAAATKL---QKGQMTDEPV-KTQFGWHIIRVDD 220

Query: 356 IKPSFTVSFQEVKKDIANQM 375
           ++      F +VK  IA QM
Sbjct: 221 VRSVAPPPFDQVKPQIAQQM 240


>gi|312112916|ref|YP_004010512.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218045|gb|ADP69413.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 283

 Score = 38.5 bits (88), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 12/148 (8%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           +EK+ +  I++ + +A Y++   K    PE+R    ++   ++EA +  + LK G  F +
Sbjct: 102 YEKKVRDAITDAQAKAAYDEQIAKLKPEPEVRA-RHILVKTKEEAADLVKQLKGGADFNE 160

Query: 299 LAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           LA++     S  +   LG FSK  +  V   D+ F+L + G  +  +   FG+ +  V +
Sbjct: 161 LAKKSADGPSANTGGDLGYFSKGQMVKV-FEDTAFAL-QPGQISDPVQSEFGWHVIKVED 218

Query: 356 IKPSFTVSFQEVKKDIA-----NQMRIT 378
            +     SF EVK  I      NQ+R T
Sbjct: 219 KRNRPVPSFDEVKDQIVASLVQNQLRET 246


>gi|160871799|ref|ZP_02061931.1| putative peptidyl prolyl cis-trans isomerase D [Rickettsiella
           grylli]
 gi|159120598|gb|EDP45936.1| putative peptidyl prolyl cis-trans isomerase D [Rickettsiella
           grylli]
          Length = 484

 Score = 38.5 bits (88), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 120/278 (43%), Gaps = 50/278 (17%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD-ALFSVSGSSTVVS-VGRQKVPFSSF-- 56
           ML+ IR  S+ W+    + +L + F +WG+    +F  SG++ +V+ +  Q +  S F  
Sbjct: 1   MLQSIRDKSQGWITNTVIGLLIIIFALWGIHGYVVFHESGNNKIVAKIAGQLLRQSDFEK 60

Query: 57  --INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL----VSGATLDQFIEDIGLEA 110
               +++Q    ++Q            S   DKK ++ L    V    + Q +    L++
Sbjct: 61  IYQRAYQQNRDYLNQ------------SFSHDKKKVEALKEQVVREWEITQVLVYAALQS 108

Query: 111 DHGRVWGEIARS-----PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
            + R+   +  S     P F     +FS + F S L      + E+++   KML    ++
Sbjct: 109 KY-RISQTLIDSFLLQVPAFQSA-GQFSIEKFYSVLRANDYTKLEFLEEIKKML----LI 162

Query: 166 GMFVGGMRPSNLLLDQAKRFYFE----NRSVDYIV------LNNRHVPAIADPSNAVLTQ 215
                G+  S  +L Q  R Y E     R   Y++      LN +++P      ++ +  
Sbjct: 163 NQVQQGITQSAFVLPQDIRNYIEYNHQKRDFSYLIVPYSMFLNQQNIP------DSRIFA 216

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
           ++++ K  +R PE   I Y+   +  ++  +E S D+L
Sbjct: 217 YYQENKQLFRQPEQVSIEYVQLSLKNEKNFLE-SRDKL 253


>gi|297566395|ref|YP_003685367.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
           DSM 9946]
 gi|296850844|gb|ADH63859.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
           DSM 9946]
          Length = 322

 Score = 38.5 bits (88), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 82/180 (45%), Gaps = 9/180 (5%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           N  L+Q      D+YR   Y+ ++Y  + + + +++++ S   L+  Y  ++ ++ +PE 
Sbjct: 124 NQALSQVGIASIDDYRMLVYEALTYNAY-LEQLQEQVKPSESALRLIYGLSQAEFTTPET 182

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSK-EYIPDVS 324
                ++  +  EA    + L +G  F  LA    ++ G   +   LG   +  Y+    
Sbjct: 183 YCASHILVVSGDEAISLIRQLGQGADFATLAKQYSQDPGSKDNGGDLGCEPRGTYV--AP 240

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             +++  L         +   FG+ I  ++ I+PS    F EVK  IA ++ + +A EK+
Sbjct: 241 FENAMIRLKAGQTSREPVRTEFGFHIIRLNKIEPSTVRPFDEVKSSIAERV-VQRALEKL 299


>gi|170763930|ref|ZP_02635346.2| putative foldase protein PrsA [Clostridium perfringens B str. ATCC
           3626]
 gi|170764086|ref|ZP_02631748.2| putative foldase protein PrsA [Clostridium perfringens E str.
           JGS1987]
 gi|170662690|gb|EDT15373.1| putative foldase protein PrsA [Clostridium perfringens E str.
           JGS1987]
 gi|170712067|gb|EDT24249.1| putative foldase protein PrsA [Clostridium perfringens B str. ATCC
           3626]
          Length = 326

 Score = 38.5 bits (88), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 88/178 (49%), Gaps = 13/178 (7%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKKGK-------- 294
           K +++++++ Q  Y++NK+++ + +   + + L+F N++EA +A+  ++ GK        
Sbjct: 149 KDVKVTDEDAQKYYDENKQQFVAKDSGVLTKHLLFENEEEAQKAYDEIQSGKTTFNDLFT 208

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVIHGSFGY-VIAH 352
           K+     E  K +++ +LG    E    V    D +  L K+G+ +  I   FGY +I  
Sbjct: 209 KYENNKSENKKPIAE-NLGVVPAENSGLVQEFVDGLKPL-KEGEISKPIKTQFGYHIIQA 266

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
            +  +    + F EVK  I   ++  K SEK K D  + ++ L +    D++    KI
Sbjct: 267 GATYEKGAQLPFDEVKSQIIQILKQQKDSEKFKADMDQWKKDLNVKVYDDKLQEGLKI 324


>gi|319653565|ref|ZP_08007664.1| hypothetical protein HMPREF1013_04281 [Bacillus sp. 2_A_57_CT2]
 gi|317394764|gb|EFV75503.1| hypothetical protein HMPREF1013_04281 [Bacillus sp. 2_A_57_CT2]
          Length = 292

 Score = 38.5 bits (88), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           E +IEIS + ++  +++NKE +   E  +   ++  +++ A E    L  G  F +LA E
Sbjct: 130 EPRIEISEEAMKTYFDENKESFAQEEQVSASHILVEDEETAKEVIGKLNDGGDFAKLAAE 189

Query: 303 QGKSLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
                S+      LG F K  + +    +  FSL + G  +  +   +GY +  V+  + 
Sbjct: 190 YSTDESNKDAGGDLGFFGKGDMVE-EFEEVAFSL-EPGKISDPVKTEYGYHVIKVAEKQE 247

Query: 359 SFTVSFQEVKKDIANQM 375
           +   ++++VK+++ N +
Sbjct: 248 AKEAAYEDVKEEVKNTL 264


>gi|154148403|ref|YP_001406775.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
 gi|153804412|gb|ABS51419.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
          Length = 271

 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 19/166 (11%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGKKFI 297
            EK K I+++ ++++A Y+KNK K+  P       ++   + EA      LK  KG   +
Sbjct: 102 EEKAKNIKVAENDIKAFYDKNKAKFMQPAQIKAGHILVKTEAEAKTIINDLKNFKGDDLV 161

Query: 298 --------QLAEEQGKSLSDISLGSFSKEYI--PDVSLADSIFSLAKKGDFT--PVIHGS 345
                   Q + E     +  +LG FS+  +  P    A ++    KKG+ +  PV    
Sbjct: 162 KNFAITAAQKSLEPAARQTGGALGWFSEHQMVKPFYDAAKAL----KKGEISLKPV-KTQ 216

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           FGY +    + K +   +F E K  I N ++  K  E + ++ K L
Sbjct: 217 FGYHVILKEDAKDAHQATFSEAKPTIENILKQEKLKETITKEAKDL 262


>gi|299144111|ref|ZP_07037191.1| PPIC-type PPIASE domain protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518596|gb|EFI42335.1| PPIC-type PPIASE domain protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 253

 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 15/136 (11%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ----- 303
           S  E++  Y  N E Y  P       ++  ++ +A+E +  +  G+ F +LA+       
Sbjct: 95  SEKEIEEFYNANAEHYDVPNSVDASHILVEDENKANELYNKILAGENFEELAKNNSMCPS 154

Query: 304 ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
              G +L     G   +E+       + +FS+ K+G+ +  +  +FG+ I  ++ I PS 
Sbjct: 155 KNNGGNLGVFHSGQMVREF------DEKVFSM-KEGEISEPVKTNFGFHIIKLNKIIPSK 207

Query: 361 TVSFQEVKKDIANQMR 376
             +  EV+ D+  +++
Sbjct: 208 KHTLSEVRDDVIKEVK 223


>gi|39997172|ref|NP_953123.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39984062|gb|AAR35450.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
 gi|298506185|gb|ADI84908.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           sulfurreducens KN400]
          Length = 321

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 17/138 (12%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS------------LKKG 293
           I++   +L+A YEKNK  +  PE   V  ++   +KEA    Q+            +  G
Sbjct: 152 IKVPETDLRAYYEKNKSGFKKPETIAVRHILVKVEKEASPETQAEARKKIEGIRDRIGAG 211

Query: 294 KKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F  LA E     S      LG   + ++P        FSL K G+ + ++    G+ I
Sbjct: 212 ADFAVLASESSDCASAAKGGDLGEIQRGFMPR-EFDQVAFSL-KPGETSGIVKTHHGFHI 269

Query: 351 AHVSNIKPSFTVSFQEVK 368
             V    P    +F+E++
Sbjct: 270 IRVMERHPETVRTFEEMR 287


>gi|189220090|ref|YP_001940730.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum
           infernorum V4]
 gi|189186948|gb|ACD84133.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum
           infernorum V4]
          Length = 283

 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 17/168 (10%)

Query: 217 FEKYKDNYRAPE-YKRISYILFDVHEKEKKIEISNDELQAEYEK-----NKEKYFSPEIR 270
            EK K+  RA E + R +     V +K +    S  EL+  Y +      KE+Y      
Sbjct: 94  MEKSKELLRAQEEFNRKALTELVVQKKIRSQPPSEGELRLRYSQLLKSLPKEEY------ 147

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
            +  +V P +++A E  + LKKG+ F  LA E  +  +    G     +    +L  S +
Sbjct: 148 KIRHIVLPTRRKALEVMERLKKGENFSLLAMESLEKQTADRGGELG--WQNKATLVLSAY 205

Query: 331 SLAKK---GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           SL +K   G     I  S G+ +  +  ++P    S++E+K  +  Q+
Sbjct: 206 SLIQKLKPGQVGGPILSSMGWELIELLAVRPLRVPSYEELKPQLIQQI 253


>gi|332188835|ref|ZP_08390544.1| hypothetical protein SUS17_3944 [Sphingomonas sp. S17]
 gi|332011145|gb|EGI53241.1| hypothetical protein SUS17_3944 [Sphingomonas sp. S17]
          Length = 179

 Score = 38.5 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK-GDFTPVIHGSFGYVIA 351
           GK F +L EE+ + L+DI  GS S     DV  AD   +L +K  D    + GS+G++IA
Sbjct: 15  GKPFAELDEEERQVLTDIESGSISTRDAADV--ADETATLGEKLADRVAAVGGSWGFIIA 72


>gi|91203827|emb|CAJ71480.1| similar to peptidyl-prolyl cis-trans isomerase (survival protein
           SurA precursor) [Candidatus Kuenenia stuttgartiensis]
          Length = 333

 Score = 38.1 bits (87), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 16/139 (11%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE----AFQSLKK-------GKK- 295
           +S+ +++  +EKN++ Y   E++    LV     + +E    A Q ++K       GKK 
Sbjct: 171 VSDAKVKDYFEKNRQIYDGTEVQASHILVDTRNLQGEEDLAKAKQKIEKVKAEIAEGKKD 230

Query: 296 FIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F +LAEE     S      LG F ++       A++ F+L K G+ + V+   FGY I  
Sbjct: 231 FAKLAEEYSDCPSSKKGGDLGYFVRKGQMVEPFAEAAFAL-KVGEVSDVVTTQFGYHIIK 289

Query: 353 VSNIKPSFTVSFQEVKKDI 371
           V++IK    + F E+K +I
Sbjct: 290 VTDIKKGGEIDFNELKPEI 308


>gi|253575648|ref|ZP_04852984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844986|gb|EES72998.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 398

 Score = 38.1 bits (87), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 69/139 (49%), Gaps = 18/139 (12%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           E +I +++++++  +E  K+ + +PE      ++   ++EA +  + LK+G  F +LA+ 
Sbjct: 231 EPQINVTDEQVKETFETYKDSFNTPEQVRTSVILVATEEEAKDIVKQLKEGADFAELAKS 290

Query: 303 QGKSLSDISLGSFSKEYIPDVSL----------ADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           +       SL + +K+   D              ++ F LA KG+ +  +  S GY +  
Sbjct: 291 K-------SLDTATKDQGGDTDFFARGEMEEAVEEAAFKLA-KGEISEPVKTSEGYQVIK 342

Query: 353 VSNIKPSFTVSFQEVKKDI 371
           V++ K + T + +E K +I
Sbjct: 343 VTDKKEAHTATLEEKKDEI 361


>gi|34540273|ref|NP_904752.1| hypothetical protein PG0452 [Porphyromonas gingivalis W83]
 gi|34396585|gb|AAQ65651.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
          Length = 715

 Score = 38.1 bits (87), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 10/123 (8%)

Query: 290 LKKGKKFIQLAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH--- 343
           L  GK F +LAE+   +G S+ + +  +   +++ ++  +  I S A K +   V     
Sbjct: 496 LNSGKPFPKLAEQARSKGLSIEENAEVTVFSDHVGNIPSSREIVSWALKAEEDEVNEKIF 555

Query: 344 --GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY--KRLEEFLALGT 399
             G+   VIA V +  PS     +++K+ IANQ+R+ K  EK+  D   K+L+   A  +
Sbjct: 556 RCGTDYLVIAAVKDQIPSGYRPVEKIKEQIANQLRVEKQGEKLVADLKAKKLDNLEAYAS 615

Query: 400 SMD 402
           +M+
Sbjct: 616 AMN 618


>gi|261856056|ref|YP_003263339.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
           neapolitanus c2]
 gi|261836525|gb|ACX96292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
           neapolitanus c2]
          Length = 325

 Score = 38.1 bits (87), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 11/139 (7%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ- 303
           K+++++ ELQ EY +  + Y          ++   ++EAD   + L  G  F QLA+E+ 
Sbjct: 145 KMKVTDAELQPEYNQFVKGYPKTTQYKAAHILVKTKEEADAIIKQLDSGTPFDQLAKEKS 204

Query: 304 ---GKSLSDISLGSF-SKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNIK 357
              G +     LG F + + +P+ S A       KKG+ T  PV    FG+ +  + + +
Sbjct: 205 QDPGSAKQGGELGWFDADQMVPEFSAAVEKL---KKGEITQQPV-KSQFGWHVIKLEDTR 260

Query: 358 PSFTVSFQEVKKDIANQMR 376
            +   +F E+K  +  Q R
Sbjct: 261 LAQPPTFAELKPQLETQYR 279


>gi|188995374|ref|YP_001929626.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
           gingivalis ATCC 33277]
 gi|188595054|dbj|BAG34029.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 715

 Score = 38.1 bits (87), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 10/123 (8%)

Query: 290 LKKGKKFIQLAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH--- 343
           L  GK F +LAE+   +G S+ + +  +   +++ ++  +  I S A K +   V     
Sbjct: 496 LNSGKPFPKLAEQARSKGLSIEENAEVTVFSDHVGNIPSSREIVSWALKAEKDEVNEKIF 555

Query: 344 --GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY--KRLEEFLALGT 399
             G+   VIA V +  PS     +++K+ IANQ+R+ K  EK+  D   K+L+   A  +
Sbjct: 556 RCGTDYLVIAAVKDQIPSGYRPVEKIKEQIANQLRVEKQGEKLVADLKAKKLDNLEAYAS 615

Query: 400 SMD 402
           +M+
Sbjct: 616 AMN 618


>gi|330817257|ref|YP_004360962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           gladioli BSR3]
 gi|327369650|gb|AEA61006.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           gladioli BSR3]
          Length = 259

 Score = 38.1 bits (87), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           KK + S+ E++A+Y++  +     E   +  ++  N+++A +    +K G KF  LA++ 
Sbjct: 107 KKNQPSDAEVKAKYDELAKGATGSEYH-LHHILVDNEQQAKDLIAKIKAGAKFEDLAKQF 165

Query: 304 GKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNI 356
            K       G     +  K ++P+ + A +     +KG  T  PV    FG+ I  V ++
Sbjct: 166 SKDPGSAKNGGDLDWADPKSFVPEFANAATHL---QKGQMTDEPV-KTQFGWHIIRVDDV 221

Query: 357 KPSFTVSFQEVKKDIANQM 375
           +P     F++VK  +A QM
Sbjct: 222 RPIAPPPFEQVKAQLAQQM 240


>gi|183179758|ref|ZP_02957969.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MZO-3]
 gi|183013169|gb|EDT88469.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MZO-3]
          Length = 157

 Score = 38.1 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G +  N  ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRLSDEQVRQ 119

Query: 118 EIARSPLFHGK 128
            I   P F  +
Sbjct: 120 LILEIPQFQSQ 130


>gi|163743876|ref|ZP_02151247.1| PPIC-type PPIASE domain protein [Phaeobacter gallaeciensis 2.10]
 gi|161382817|gb|EDQ07215.1| PPIC-type PPIASE domain protein [Phaeobacter gallaeciensis 2.10]
          Length = 172

 Score = 38.1 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 7/140 (5%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           S+++L+  Y++        +      ++   +++A +    L  G  F  LA E+    S
Sbjct: 6   SDEDLRTAYDEKYTDGTGGDEFNASHILVETEEDAADIRAELDAGADFATLARERSTGPS 65

Query: 309 DIS---LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
             +   LG FSK   +P+   A  +      GD +  +   FG+ +  +++ + S   +F
Sbjct: 66  GPNGGELGWFSKGRMVPEFEEAVLVMG---AGDVSDPVQTQFGWHVIKLNDRRTSAAPTF 122

Query: 365 QEVKKDIANQMRITKASEKV 384
            EV++++A QMR     ++V
Sbjct: 123 DEVREELATQMRQEAVEDRV 142


>gi|224825281|ref|ZP_03698386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
 gi|224602202|gb|EEG08380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
          Length = 258

 Score = 38.1 bits (87), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 34/56 (60%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           +S+ +L+AEY+K K ++   +      ++ P + EA     +L+KGK F QLA+E+
Sbjct: 109 VSDAQLRAEYDKIKSQFPEKKSYHARHILVPTEAEAKAVIDALRKGKAFDQLAKEK 164


>gi|218777935|ref|YP_002429253.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759319|gb|ACL01785.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 334

 Score = 38.1 bits (87), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 33/183 (18%)

Query: 248 ISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEA-----------FQSLKKGKK 295
           +S  E +  Y+ ++E ++  E +R    LV   +++ D A            + LKKG+ 
Sbjct: 162 VSEAEAREYYDGHRENFYQEEMVRASHILVEFKEEDGDRADEKALITAKRIVRKLKKGEN 221

Query: 296 FIQLAEE--------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           F   A E        +G  L  I  G   K  +    L + +F + + G+ +  +   FG
Sbjct: 222 FAAAAREYSDCESKKRGGDLGYIQKGDLPKAQLK--PLEEVVFGM-EVGEISEPVESVFG 278

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y I +V + KP   + F E+K  +  +M   + +  +          L  GT + E +R 
Sbjct: 279 YHILYVEDKKPRTLLGFDEIKDKLIAKMTEDRKAAMI----------LDHGTKLKETARI 328

Query: 408 EKI 410
           E++
Sbjct: 329 ERL 331


>gi|288555301|ref|YP_003427236.1| post-translocation chaperonin [Bacillus pseudofirmus OF4]
 gi|288546461|gb|ADC50344.1| protein secretion (post-translocation chaperonin) [Bacillus
           pseudofirmus OF4]
          Length = 304

 Score = 38.1 bits (87), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 9/120 (7%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE-- 302
           ++ ++ ++ QA YE+N+E Y   E      ++  +++ A+E  + ++ G+ F +LA E  
Sbjct: 136 EVNVTEEDKQAYYEENEELY--AEQVQASHILVEDEETANEVLEKIEAGEDFGELAAEYS 193

Query: 303 -QGKSLSDISLGSF-SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
             G +     LG F + E +P+    ++ F L + G+ +  +   +GY I  V++ K  +
Sbjct: 194 MDGSATRGGDLGFFGTGEMVPE--FEEAAFGL-EVGEVSDAVESQYGYHIIKVTDRKSGY 250


>gi|326798824|ref|YP_004316643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp.
           21]
 gi|326549588|gb|ADZ77973.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp.
           21]
          Length = 701

 Score = 38.1 bits (87), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 15/97 (15%)

Query: 319 YIPDVSLADSIFSLA---KKGDFTPVIHG-SFGYVIAHVSNIKPSFTVSFQEVKKDIA-- 372
           Y+P++     +   A   +KGD T  ++     YVIA ++NI+P   +S ++VKK+I   
Sbjct: 509 YLPNLETPREVIKWAFKAEKGDLTDKVYELDNQYVIAKLTNIRPKGQLSLEDVKKEIEPA 568

Query: 373 --NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
             N+++ TK ++K       L + L    S+D+I+++
Sbjct: 569 VLNKVKATKLAQK-------LNDALQGAKSIDQIAQK 598


>gi|296273463|ref|YP_003656094.1| hypothetical protein Arnit_1933 [Arcobacter nitrofigilis DSM 7299]
 gi|296097637|gb|ADG93587.1| conserved hypothetical protein [Arcobacter nitrofigilis DSM 7299]
          Length = 488

 Score = 38.1 bits (87), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  VG +K+    +   +       SQ  G   N E A+ +GL    L  ++    +  +
Sbjct: 43  VAVVGDRKISVEEYQREYSSLYRQYSQVYGNKFNQEMAKRIGLPDAALSLVIQKNLILSY 102

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
            +D+GL      +  E+ + P F  KD KF  +++V  L++ G
Sbjct: 103 ADDLGLLVTDKDIAKELVQMPSFI-KDGKFDKELYVKVLSQNG 144


>gi|307243271|ref|ZP_07525442.1| PPIC-type PPIASE domain protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306493399|gb|EFM65381.1| PPIC-type PPIASE domain protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 255

 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQG 304
           +EI++DE  A YE++K+++   E  + + ++  N++ A E  + + KK   F   A E  
Sbjct: 93  VEITDDEKLAYYEEHKDEFKEDESASAKHILVDNEELALEIEKKINKKEVSFEDAAVEYS 152

Query: 305 KSLSDI---SLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
              S     SLG+F + + +P+    +++F+L   G  +  +   FGY +  V + K + 
Sbjct: 153 SCPSKSNGGSLGTFGRGQMVPE--FEEAVFTLP-VGKVSSPVKTQFGYHLILVDDRKEAR 209

Query: 361 TVSFQEVKKDIANQMRITKASE 382
            + +++ KKD+   +   K +E
Sbjct: 210 QLEYEDCKKDVEQSLAFKKQNE 231


>gi|322652566|gb|EFY48920.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
          Length = 141

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 9/142 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59
           M++ +R A+ + V KI  V++ V F++ G+S  L  + GS+   + V  Q++  + F N+
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  E   + Q++G    SE A + G    L +++L+ L+  A LDQ+  ++ L     +V
Sbjct: 59  FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVF 137
              I  +P F   D KF ++ +
Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRY 138


>gi|254476741|ref|ZP_05090127.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. R11]
 gi|214030984|gb|EEB71819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. R11]
          Length = 283

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 87/191 (45%), Gaps = 18/191 (9%)

Query: 210 NAVLTQWFE----KYKDNYRAPEYKRISY-------ILFDVHEKEKKIEISNDELQAEYE 258
           +A+L Q  +    K + N   P+Y  +S        +  DV EK  +   + +E++A YE
Sbjct: 67  DAILDQLIQQTALKQQLNGEVPKYVELSLENESRSLLAADVIEKVMENAATEEEVRAAYE 126

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSF 315
           +        +      ++  ++++A+E    L++G  F   A E+    S  +   LG F
Sbjct: 127 EQYSDGNGGDEFNASHILVESEEDAEEIRAELEEGADFATTARERSTGPSGPNGGELGWF 186

Query: 316 SK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
           +K   +P+    +++ +L+  G+ +  +   FG+ +  ++  + S    F E++  +A Q
Sbjct: 187 TKGRMVPE--FEEAVIALS-AGEISAPVQTQFGWHVIKLNERRKSAAPEFAEIRDQLAAQ 243

Query: 375 MRITKASEKVK 385
           +R     E V+
Sbjct: 244 IREEAVEESVR 254


>gi|329901823|ref|ZP_08272915.1| Peptidyl-prolyl cis-trans isomerase domain protein
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549006|gb|EGF33618.1| Peptidyl-prolyl cis-trans isomerase domain protein
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 244

 Score = 37.7 bits (86), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 17/148 (11%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE- 302
           KK  +S+ +++AEY+K K      E R    ++   + EA      LK G KF  LA+  
Sbjct: 93  KKHPVSDADIKAEYDKFKATAGDKEYRA-RHILVEKEDEAKAIIVKLKAGAKFEDLAKAS 151

Query: 303 -------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVS 354
                   G  L   S  SF K +      +D++ +LAK G +T V +   FG+ +  + 
Sbjct: 152 KDPGSAANGGDLDWASPASFVKPF------SDAMVALAK-GSYTEVPVKTQFGFHVIKLE 204

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE 382
           + + +   + +EVK  I+  ++  K  E
Sbjct: 205 DTRAAKVPTLEEVKPQISESLQQKKLQE 232


>gi|52783929|ref|YP_089758.1| YacD [Bacillus licheniformis ATCC 14580]
 gi|163119182|ref|YP_077358.2| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           licheniformis ATCC 14580]
 gi|319648596|ref|ZP_08002810.1| YacD protein [Bacillus sp. BT1B_CT2]
 gi|52346431|gb|AAU39065.1| YacD [Bacillus licheniformis ATCC 14580]
 gi|145902685|gb|AAU21720.2| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           licheniformis ATCC 14580]
 gi|317389363|gb|EFV70176.1| YacD protein [Bacillus sp. BT1B_CT2]
          Length = 296

 Score = 37.7 bits (86), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 7/147 (4%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           K I IS+ EL++ Y KNK+ Y   +   ++ +V  ++ EA++  + LK+G  F   A E 
Sbjct: 132 KDIVISDSELKSFYNKNKDLYKFDDSYRLKHIVVKDKDEAEQVLKELKEGSSFEAAAAEH 191

Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                      D+   +   E +P   L +    L +       I  S GY I  +    
Sbjct: 192 STDRYTAPYGGDLGFVNDQHENVPAEYL-EKAEQLKENQWVDEPIKTSQGYAIIQLKEKL 250

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384
           P    ++ EVK  I  Q+ + +  +K 
Sbjct: 251 PGQAFTYSEVKNQIRRQIAMDQLGDKA 277


>gi|331270660|ref|YP_004397152.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum
           BKT015925]
 gi|329127210|gb|AEB77155.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum
           BKT015925]
          Length = 247

 Score = 37.7 bits (86), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           ++++++ E++  Y  NK+ +   E  + + ++  N++ A+E  + +K G  F + A+E  
Sbjct: 91  EVQVTDKEVEDYYTANKKNFVVGETVSAKHILVDNEELANEVAEKIKNGMSFDEAAKEYS 150

Query: 305 KSLSDI---SLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
              S     +LG F K + +P+    ++ F+L + G  +  +   FGY +  V +   + 
Sbjct: 151 TCPSKAQGGNLGKFGKGQMVPE--FEEAAFNL-EIGKLSEPVKTQFGYHLIEVEDKNKAT 207

Query: 361 TVSFQEVK 368
             SF EVK
Sbjct: 208 EKSFDEVK 215


>gi|145589120|ref|YP_001155717.1| hypothetical protein Pnuc_0937 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047526|gb|ABP34153.1| hypothetical protein Pnuc_0937 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 487

 Score = 37.7 bits (86), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 48/256 (18%), Positives = 108/256 (42%), Gaps = 30/256 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M + +RK  +  + +I L++  VP F+++G+S     +   + +V V  + +      ++
Sbjct: 1   MFDTVRKHQK--LLQIVLMLFIVPSFVMFGISSYSGFLDKETDLVKVNGKPITAQEVDSA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            K++    ++++G   N + A+S+   + IL+ L+    L   + ++ L+     +   +
Sbjct: 59  AKRQ----AERVGG--NIQIAQSLQFRQAILNELLQQRILGFAVINLRLQVGKEALIKSL 112

Query: 120 ARSP---LFHGKDNKFSHDVFVSRLAREGINEKEY---------IDHYTKMLSRTDVVGM 167
              P     + +D  F    F   LA  G+NE+++         I  +   ++RT++   
Sbjct: 113 QNIPQIRALYRQDGSFDDVRFKQLLASNGLNEEQFYASQAFDLKISQFVNSVARTEL--- 169

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
                 P+  L +     Y   R V  +  + +      +P+   L  ++      + +P
Sbjct: 170 ------PTPKLSEIVSTLYETERQVQSLSFDAKEYINKVNPTQEELQAFYNANTKLFESP 223

Query: 228 EYKRISYILFDVHEKE 243
           EY  + YI+     KE
Sbjct: 224 EYIDVEYIVLKADPKE 239


>gi|330889992|gb|EGH22653.1| periplasmic folding chaperone [Pseudomonas syringae pv. mori str.
           301020]
          Length = 427

 Score = 37.7 bits (86), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 13/188 (6%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           ++++   + +PE   + YI         K+++ +++LQA Y+K      S + R    L+
Sbjct: 18  YDQHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILI 76

Query: 277 FPNQKEADEAF--------QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSL 325
             N K  DE          Q L KG+ F  LA+E  +     S G    ++ + + D + 
Sbjct: 77  EVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAF 136

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            D++++L K     PV    FG+ +  +  ++     +F  +K  +   ++     +K  
Sbjct: 137 EDTLYALNKDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFV 195

Query: 386 EDYKRLEE 393
           E  K+LE+
Sbjct: 196 EVTKQLED 203


>gi|313681753|ref|YP_004059491.1| ppic-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154613|gb|ADR33291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 280

 Score = 37.7 bits (86), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 12/144 (8%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGKKFIQ--LAE 301
           I++   E++A ++ N E++   E      ++   + EA    +S+K   G K     +A+
Sbjct: 117 IKVDAKEVKAYFDANPEEFVDKEKIHARHILVKTEGEAQSIIKSMKGLSGDKLRNEFIAQ 176

Query: 302 EQGKSLSDIS-----LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
            + KS    +     LG F + + +P  S  D+ F++ +    +  +   FGY + ++ +
Sbjct: 177 AKSKSTGPSAAKGGDLGYFPRGQMVP--SFNDAAFAMKEGAISSTPVQSQFGYHVIYIED 234

Query: 356 IKPSFTVSFQEVKKDIANQMRITK 379
            KP+  + F EVK  I  ++++ K
Sbjct: 235 KKPAKKLGFDEVKNFIEQRLKMDK 258


>gi|74317550|ref|YP_315290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057045|gb|AAZ97485.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 274

 Score = 37.7 bits (86), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 10/143 (6%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           +++ E+QA Y+K K     PE R    LV   + EA +    L K  KF  LA++  K  
Sbjct: 126 VTDAEVQAAYDKAKAGPIEPEYRARHILVS-TEAEAKKVIADLGKKAKFETLAKKMSKDP 184

Query: 308 SDISLGSF-----SKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFT 361
                G        + ++P+ S  +++ SL KKG+ T   +   FGY +  + + +    
Sbjct: 185 GSAKNGGALDWADRRAFVPEFS--EALASL-KKGETTQTPVKTQFGYHVIRLDDTRQPKL 241

Query: 362 VSFQEVKKDIANQMRITKASEKV 384
                V+ +I  Q++  +  + V
Sbjct: 242 PELNAVRDEIVKQLQQQRVRDAV 264


>gi|330448801|ref|ZP_08312448.1| peptidyl-prolyl cis-trans isomerase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492992|dbj|GAA06945.1| peptidyl-prolyl cis-trans isomerase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 433

 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 280 QKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           ++EA++    LKKG  F QLA    +  K+L     G  SKE +P +  AD I +  K  
Sbjct: 198 KQEAEDIVAQLKKGADFSQLAYRYSKGPKALKGGEWGWMSKEEMPTI-FADQIQNNGKDA 256

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
              P   G  GY I  ++++K   +VS  EVK
Sbjct: 257 IIGPFRSG-VGYHILKINDVKGMPSVSVVEVK 287


>gi|313672046|ref|YP_004050157.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938802|gb|ADR17994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 345

 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 7/146 (4%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           I+IS +EL+A YE+  +   S     + Q+V  ++ + +EA++ LK GK+F  +A+E   
Sbjct: 176 IKISEEELRAYYEEFIKTKQSKVYYHIYQIVNEDKHKIEEAYKLLKSGKRFEDVAKEYSS 235

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKK---GDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                + G      I D+     +F L K     + + ++   +GY I  +     S   
Sbjct: 236 GPEAENGGDMG---IVDIENFPPVFDLVKNLKPNEISKIVSSEYGYHIIMLKETISSDKP 292

Query: 363 SFQEVKKDIANQMRITKASEKVKEDY 388
           SF+E+K  + +++ I +  ++  E+Y
Sbjct: 293 SFEEIKDLLLDEL-IAEKKDQYLENY 317


>gi|218529730|ref|YP_002420546.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           chloromethanicum CM4]
 gi|240138037|ref|YP_002962509.1| putative cell-binding factor 2 precursor (Major antigen peb4A),
           cbf2 [Methylobacterium extorquens AM1]
 gi|218522033|gb|ACK82618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           chloromethanicum CM4]
 gi|240008006|gb|ACS39232.1| putative cell-binding factor 2 precursor (Major antigen peb4A),
           cbf2 [Methylobacterium extorquens AM1]
          Length = 300

 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 19/177 (10%)

Query: 226 APEYKR-ISY-----ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           APE+KR ++Y     +L D  E+E K  ++ +  +A YE+  +     E      ++  +
Sbjct: 108 APEFKRKLAYFRDKLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVES 167

Query: 280 QKEADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
           + EA +    +K G+ F ++A E     G       LG FS+E +     AD+ F +   
Sbjct: 168 EDEAKKIAARVKGGEDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVK-PFADAAFKMT-P 225

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-------ANQMRITKASEKVK 385
           G  +  +   FG+ +  V   +     +F E+K+ I       A Q  I K  E  K
Sbjct: 226 GQVSDPVKTQFGWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAK 282


>gi|239815915|ref|YP_002944825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           S110]
 gi|239802492|gb|ACS19559.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           S110]
          Length = 261

 Score = 37.7 bits (86), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 222 DNYRAP-EYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           D+YR   E  R + ++  + E  +K   +S+ E++AEY+K        E +    ++   
Sbjct: 85  DDYRNQLELARQAILIRALFENYRKTSPVSDAEVKAEYDKFVAANGGKEYKA-RHILVET 143

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAK 334
           + +A +    LKKG KF  +A++Q K     + G     +    ++P+ S  +++  L K
Sbjct: 144 EDQAKKIMADLKKGAKFEDIAKKQSKDPGSGANGGDLDWANPASFVPEFS--EAMIKL-K 200

Query: 335 KGDFTPV-IHGSFGYVIAHVSNIKPSFTVSFQEV 367
           KG+ TP  +   FGY I  V +++ +     +EV
Sbjct: 201 KGETTPAPVKTQFGYHIIRVDDVRQAQLPKLEEV 234


>gi|170764243|ref|ZP_02639032.2| foldase protein PrsA [Clostridium perfringens CPE str. F4969]
 gi|170714999|gb|EDT27181.1| foldase protein PrsA [Clostridium perfringens CPE str. F4969]
          Length = 325

 Score = 37.7 bits (86), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 91/184 (49%), Gaps = 26/184 (14%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK--------- 294
           K +++S+++++  Y++NK+++       V+ L+FP ++EA +A+  ++ GK         
Sbjct: 149 KDVKVSDEDIKKYYDENKQQFVVKAGADVKHLLFPTEEEAQKAYDEIQSGKTTFDDLFNK 208

Query: 295 -------KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
                  K   +AE  G+   D +  +F K+++      + +  L K G+ +  +  SFG
Sbjct: 209 YEKNKDPKKEPIAENLGR--VDYNNSNFDKDFM------EGLKGL-KDGEISKPVKSSFG 259

Query: 348 YVIAHVSNIKPSFT-VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           Y I   +NI    T ++ ++ K+ I + +   K  E  ++D ++ ++ L +    D++  
Sbjct: 260 YHIIKATNITDKETQLTEEQAKEQIISILENQKKKEAYQKDLEQWKKDLNVKVYDDKLQE 319

Query: 407 REKI 410
             KI
Sbjct: 320 GLKI 323


>gi|147676453|ref|YP_001210668.1| parvulin-like peptidyl-prolyl isomerase [Pelotomaculum
           thermopropionicum SI]
 gi|146272550|dbj|BAF58299.1| parvulin-like peptidyl-prolyl isomerase [Pelotomaculum
           thermopropionicum SI]
          Length = 324

 Score = 37.7 bits (86), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 88/196 (44%), Gaps = 34/196 (17%)

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
           +A P+ A + ++++++ + +  PE  ++ +ILF V   +K   + + + +A     +   
Sbjct: 146 VAPPAEADIKKYYDEHLEEFSRPEQLQVRHILFFVDGGDKGYPVQHTDAEAREMAEEAI- 204

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIP 321
                                    LK GK F +LA E+ +   + +D  L +FS++   
Sbjct: 205 -----------------------AQLKAGKDFAELAREKSEDSGTRADGGLYTFSRDEAV 241

Query: 322 DVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN----QMR 376
               AD+ ++L K G++T   +   +GY I  +    P+    F+EV++DIA     Q R
Sbjct: 242 K-EFADAAYAL-KVGEYTADPVKTEYGYHIIKLEKKIPARQDPFEEVRQDIAGLLLEQAR 299

Query: 377 ITKASEKVKEDYKRLE 392
             K  E +++   R E
Sbjct: 300 QEKFGEFMQQAKDRAE 315


>gi|163850906|ref|YP_001638949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           extorquens PA1]
 gi|163662511|gb|ABY29878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           extorquens PA1]
          Length = 300

 Score = 37.7 bits (86), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 19/177 (10%)

Query: 226 APEYKR-ISY-----ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           APE+KR ++Y     +L D  E+E K  ++ +  +A YE+  +     E      ++  +
Sbjct: 108 APEFKRKLAYFRDKLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVES 167

Query: 280 QKEADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
           + EA +    +K G+ F ++A E     G       LG FS+E +     AD+ F +   
Sbjct: 168 EDEAKKIAARVKGGEDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVK-PFADAAFKMT-P 225

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-------ANQMRITKASEKVK 385
           G  +  +   FG+ +  V   +     +F E+K+ I       A Q  I K  E  K
Sbjct: 226 GQVSDPVKTQFGWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAK 282


>gi|182420516|ref|ZP_02643225.2| foldase protein PrsA [Clostridium perfringens NCTC 8239]
 gi|182624265|ref|ZP_02952050.1| foldase protein PrsA [Clostridium perfringens D str. JGS1721]
 gi|177910483|gb|EDT72856.1| foldase protein PrsA [Clostridium perfringens D str. JGS1721]
 gi|182380295|gb|EDT77774.1| foldase protein PrsA [Clostridium perfringens NCTC 8239]
          Length = 325

 Score = 37.4 bits (85), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 91/184 (49%), Gaps = 26/184 (14%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK--------- 294
           K +++S+++++  Y++NK+++       V+ L+FP ++EA +A+  ++ GK         
Sbjct: 149 KDVKVSDEDIKKYYDENKQQFVVKAGADVKHLLFPTEEEAQKAYDEIQSGKTTFDDLFNK 208

Query: 295 -------KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
                  K   +AE  G+   D +  +F K+++      + +  L K G+ +  +  SFG
Sbjct: 209 YEKNKDPKKEPIAENLGR--VDYNNSNFDKDFM------EGLKGL-KDGEISKPVKSSFG 259

Query: 348 YVIAHVSNIKPSFT-VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           Y I   +NI    T ++ ++ K+ I + +   K  E  ++D ++ ++ L +    D++  
Sbjct: 260 YHIIKATNITDKETQLTEEQAKEQIISILENQKKKEAYQKDLEQWKKDLNVKVYDDKLQE 319

Query: 407 REKI 410
             KI
Sbjct: 320 GLKI 323


>gi|148261232|ref|YP_001235359.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
           JF-5]
 gi|146402913|gb|ABQ31440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
           JF-5]
          Length = 311

 Score = 37.4 bits (85), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 7/148 (4%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE---Q 303
           ++++  ++A Y+ +  K   PE     Q++   Q+EA++    L KG KF  LA++    
Sbjct: 142 KLTDAAVKAYYDAHYVKAKQPEEVKARQILVKTQQEAEKIIAQLGKGAKFSALAKKYSID 201

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTV 362
             + +   LG F+K+ +     AD+ F+L K G +T   +H  FG+ +      +     
Sbjct: 202 PGAKNGGELGWFTKDEMVK-PFADAAFAL-KPGTYTKTPVHSQFGWHVIESQGKREKPVP 259

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390
              +VK  I  Q+   KA     ED ++
Sbjct: 260 PLADVKDQIRQQI-TNKAVTAALEDARK 286


>gi|110799431|ref|YP_697171.1| peptidylprolyl isomerase [Clostridium perfringens ATCC 13124]
 gi|123049564|sp|Q0TMG9|PRSA_CLOP1 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|110674078|gb|ABG83065.1| putative foldase protein PrsA [Clostridium perfringens ATCC 13124]
          Length = 342

 Score = 37.4 bits (85), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 88/178 (49%), Gaps = 13/178 (7%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKKGK-------- 294
           K +++++++ Q  Y++NK+++ + +   + + L+F N++EA +A+  ++ GK        
Sbjct: 165 KDVKVTDEDAQKYYDENKQQFVAKDSGVLTKHLLFENEEEAQKAYDEIQSGKTTFNDLFT 224

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVIHGSFGY-VIAH 352
           K+     E  K +++ +LG    E    V    D +  L K+G+ +  I   FGY +I  
Sbjct: 225 KYENNKSENKKPIAE-NLGVVPAENSGLVQEFVDGLKPL-KEGEISKPIKTQFGYHIIQA 282

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
            +  +    + F +VK  I   ++  K SEK K D  + ++ L +    D++    KI
Sbjct: 283 GATYEKGAQLPFDDVKSQIIQILKQQKDSEKFKADMDQWKKDLNVKVYDDKLQEGLKI 340


>gi|326404647|ref|YP_004284729.1| peptidyl-prolyl cis-trans isomerase [Acidiphilium multivorum
           AIU301]
 gi|325051509|dbj|BAJ81847.1| peptidyl-prolyl cis-trans isomerase [Acidiphilium multivorum
           AIU301]
          Length = 311

 Score = 37.4 bits (85), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 7/148 (4%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE---Q 303
           ++++  ++A Y+ +  K   PE     Q++   Q+EA++    L KG KF  LA++    
Sbjct: 142 KLTDAAVKAYYDSHYVKAKQPEEVKARQILVKTQQEAEKIIAQLGKGAKFSALAKKYSID 201

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTV 362
             + +   LG F+K+ +     AD+ F+L K G +T   +H  FG+ +      +     
Sbjct: 202 PGAKNGGELGWFTKDEMVK-PFADAAFAL-KPGTYTKTPVHSQFGWHVIESQGKREKPVP 259

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390
              +VK  I  Q+   KA     ED ++
Sbjct: 260 PLADVKDQIRQQI-TNKAVTAALEDARK 286


>gi|187932868|ref|YP_001884407.1| peptidylprolyl isomerase [Clostridium botulinum B str. Eklund 17B]
 gi|187721021|gb|ACD22242.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           B str. Eklund 17B]
          Length = 343

 Score = 37.4 bits (85), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 65/252 (25%)

Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ------WFEKYKDNYR 225
           +RPS+  L         N+ VD  V   +      +  NA L Q       F++Y+ N  
Sbjct: 106 LRPSDEEL---------NKEVDEAVNYYKTAYQTEEQYNAFLEQNGFTEDEFKEYQKNQA 156

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-KEAD 284
                 + Y+  D+    K +E+++D++Q  Y++NKE  FS    T  ++ F    ++A+
Sbjct: 157 V-----VRYVYQDMV---KDVEVNDDDIQKYYDENKETQFS----TPGEIDFDKSLQQAN 204

Query: 285 EAFQSLKKGKKFIQLAEEQ---------GKSLSDISLGS--FSKEYIPDVSLADSIFSLA 333
           E    L  G  F ++A+E+         G SL  I   S  + KE++         F   
Sbjct: 205 EIKSQLDGGADFSEVAKEKSQDPGTKDNGGSLGFIEYSSTKYVKEFMDG-------FKDL 257

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIK---------------PSFTVSFQEVKKDIANQMRIT 378
           K+G+ +  I   FGY I  V+ +K                      ++VK+DI  Q+   
Sbjct: 258 KEGEISQPIKSQFGYHIIKVTGVKDDGAEVAHILVADKGEGTVTPLEDVKEDIRGQLLQK 317

Query: 379 KAS----EKVKE 386
           K S    EK++E
Sbjct: 318 KQSDVFNEKIEE 329


>gi|145551937|ref|XP_001461645.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429480|emb|CAK94272.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1613

 Score = 37.4 bits (85), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 26/170 (15%)

Query: 465 WVQIKESIPARDR------KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
           W Q++E IP   R      K+ + +  V++ W  +K   + +SK N+L+ +Y  +  N  
Sbjct: 522 WAQLQEEIPDIGRIKVLGFKILDSVNQVEEQWNRLKRLNQKASKLNRLMGKYYSQVLNDE 581

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
           +IG  L        Q++RM+  +KF   D         +E ++       L+ +      
Sbjct: 582 EIGIKLI-------QLSRMNQNDKFKAID---------LEEIQ----NECLATITILTDV 621

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
            K+G +   +K    L      DL++  +  ++       HD+ ++ +LD
Sbjct: 622 DKMGTISNLNKAACSLIGYAKTDLVNRKLNLIQPDLFSKYHDHFLENFLD 671


>gi|258513569|ref|YP_003189791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777274|gb|ACV61168.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 327

 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 25/148 (16%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------------QKEADEAFQSLKKG 293
           + +E+Q  Y++NKE++ + E   V  ++                  +K A +    +K G
Sbjct: 148 TEEEVQEYYDQNKEQFKTAEQYEVRHILISTDPDDAGNVKHTEAEAEKLAVQVLADIKNG 207

Query: 294 KKFIQLAEEQGKSLSDISLG---SFSK-EYIPDVSLADSIFSLA-KKGDFT-PVIHGSFG 347
           K F  LA E+ + L     G   +F K + +P+   A    +LA K G++T   +   FG
Sbjct: 208 KDFAALAREKSEDLGSKDNGGLYTFKKGDTVPEFEKA----ALALKPGEYTREPVKTQFG 263

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           Y I  +  + P+   SF EVK  I  Q+
Sbjct: 264 YHIIKLEKLIPARDQSFAEVKDGIKQQL 291


>gi|206560348|ref|YP_002231112.1| putative exported isomerase [Burkholderia cenocepacia J2315]
 gi|198036389|emb|CAR52285.1| putative exported isomerase [Burkholderia cenocepacia J2315]
          Length = 260

 Score = 37.4 bits (85), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 9/138 (6%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE- 302
           KK + ++ E++A Y++  +         +  ++  N+++A +    +K G KF  LA++ 
Sbjct: 107 KKNQPTDAEVKARYDELVKGVGGNREYHLHHILVDNEQQAKDLIAKIKGGAKFEDLAKQY 166

Query: 303 -----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                 GK+  D+   S  K Y+P+ + A       +  D TPV    FG+ I  V +I+
Sbjct: 167 SKDPGSGKNGGDLDW-SDPKAYVPEFAAAAQKLQKGQMTD-TPV-KTQFGWHIIRVDDIR 223

Query: 358 PSFTVSFQEVKKDIANQM 375
                 F +VK  IA Q+
Sbjct: 224 DIAPPPFDQVKAQIAQQL 241


>gi|146329199|ref|YP_001209808.1| peptidylprolyl cis-trans isomerase [Dichelobacter nodosus VCS1703A]
 gi|146232669|gb|ABQ13647.1| peptidylprolyl cis-trans isomerase [Dichelobacter nodosus VCS1703A]
          Length = 621

 Score = 37.4 bits (85), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 89/210 (42%), Gaps = 19/210 (9%)

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
           +  Y ++L +T    +F+G     + L +   R + + R V    L      A    +  
Sbjct: 162 VSQYYQLLGKT----VFIG-----DELQNAFYRLFSQQRDVTLFTLPLAEKIASVKTTPE 212

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
           VL  ++E+ +  Y + E   + Y++ D        EIS  EL A     +    + + R 
Sbjct: 213 VLRAYYEENRARYMSDETVSVRYVILDAAHLAGNAEISEQELAAA----RAAMVNDDRRD 268

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQ--LAEEQGKSLSDISLGSFS---KEYIPDVSLA 326
            + ++F ++  A++   +L +G++     +A  + K L+  S G F    K   P     
Sbjct: 269 GQYIIFDDKAVAEQTAAALAQGERSFADIVAAIEKKELAGQS-GLFDLHKKGEGPSEKAD 327

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           + +FSL K GD + +    +G ++  +  +
Sbjct: 328 EVLFSLQKTGDTSALFDTEYGAMLVQLGKV 357


>gi|307719645|ref|YP_003875177.1| PPIC-type PPIASE domain-containing protein [Spirochaeta thermophila
           DSM 6192]
 gi|306533370|gb|ADN02904.1| PPIC-type PPIASE domain protein [Spirochaeta thermophila DSM 6192]
          Length = 336

 Score = 37.4 bits (85), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 19/157 (12%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVF--PN-QKEADEAF--------QSLK 291
           K + +S++E +A Y++N E++  PE IR    L+   P+  KE +EA         + LK
Sbjct: 167 KHLSVSDEEARAYYDENPEQFEQPEQIRARHILIRLDPDASKEEEEAAYAKIHEVQEKLK 226

Query: 292 KGKKFIQLAE--EQGKSLSDIS-LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           +G  F +LA    +G S  +   LG F + + +P  +  ++ F+L +    + V+   +G
Sbjct: 227 QGADFAELARTYSEGPSAPNGGDLGFFGRGQMVP--AFEEAAFAL-EVNQVSDVVRTEYG 283

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             +  V++ + +   SF+EVK  +   +   K+SE +
Sbjct: 284 LHLIQVTDKQEAGKASFEEVKDQLKEMLLQQKSSEAI 320


>gi|302879437|ref|YP_003848001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
           capsiferriformans ES-2]
 gi|302582226|gb|ADL56237.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
           capsiferriformans ES-2]
          Length = 261

 Score = 37.4 bits (85), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 11/136 (8%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           V E+ KK  +++ +LQA YE  K K    E  +   ++   + EA      L K  KF +
Sbjct: 105 VQEQLKKNPVTDAQLQAGYETLKSKLGDKEY-SARHILVATEAEARNLIAQLGKKAKFEK 163

Query: 299 LAE---EQGKSLSDISLG-SFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAH 352
           LAE   + G +    +LG +  K ++     A+++ +L KKG++T  PV    FG+ +  
Sbjct: 164 LAEKSKDTGSAERGGALGWTVPKNFVE--PFANALLNL-KKGEYTKDPV-QTQFGWHVIK 219

Query: 353 VSNIKPSFTVSFQEVK 368
           + +++     SF E+K
Sbjct: 220 LDDMRALKVPSFDEIK 235


>gi|182420001|ref|ZP_02951235.1| foldase protein PrsA [Clostridium butyricum 5521]
 gi|237669545|ref|ZP_04529525.1| prsA family protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376038|gb|EDT73625.1| foldase protein PrsA [Clostridium butyricum 5521]
 gi|237654989|gb|EEP52549.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 343

 Score = 37.4 bits (85), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 26/186 (13%)

Query: 208 PSNAVLTQWFEK---YKDNYRAPEYKRISYILFDVHEK-EKKIEISNDELQAEYEKNKEK 263
           P +A L Q  E     +D+Y+  +Y +  Y L  V E     +E+++D+ +A Y++NK+ 
Sbjct: 129 PDDAQLQQVLEANGFTEDSYK--DYAKKQYKLQKVQEAITADVEVTDDDAKAYYDENKDS 186

Query: 264 YFSPEIRTVEQLVFPNQK-------------EADEAFQSLKKGKKFIQLAEEQGKSLS-- 308
            ++         +   +K             +A+E    L  G  F QLA E G   +  
Sbjct: 187 QYTVGAGANAAHILIAEKGSDGNIDFDASLAKANEVKAKLDAGADFAQLASEYGTDGTKD 246

Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
              D+   ++++       LA   F    +G  +  I   FGY I   + IK      F 
Sbjct: 247 KGGDLGFVAYNQANYDQDFLAG--FKQLSEGQISDPIKSQFGYHIIKATGIKDEVVTPFD 304

Query: 366 EVKKDI 371
           +VK+ I
Sbjct: 305 DVKEQI 310


>gi|326791007|ref|YP_004308828.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
 gi|326541771|gb|ADZ83630.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
          Length = 246

 Score = 37.0 bits (84), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 29/142 (20%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--- 302
           +  S++E++  YE ++ ++ S E      ++    +EA++  + +K G  F + A++   
Sbjct: 91  VTASDEEVKEYYETHQGQFKSDEAAKANHILVATLEEAEKVAEEIKAGLSFAEAAKKYST 150

Query: 303 -----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                QG +L + + G      +P+   A   F+++  G+ +  +   FGY I  +  + 
Sbjct: 151 CPSASQGGALGEFTRGRM----VPEFETA--AFAMS-PGEISAPVQTQFGYHIIELEALT 203

Query: 358 PSFTVSFQEVKKDIANQMRITK 379
           P+     + VK+ +  Q  + K
Sbjct: 204 PAGLSPLEAVKEQVKEQCLLAK 225


>gi|311067484|ref|YP_003972407.1| molecular chaperone lipoprotein [Bacillus atrophaeus 1942]
 gi|310868001|gb|ADP31476.1| molecular chaperone lipoprotein [Bacillus atrophaeus 1942]
          Length = 284

 Score = 37.0 bits (84), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 20/173 (11%)

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
           AK++   ++ +D  +    +   + D  +A+  Q+ E Y         +++ Y L     
Sbjct: 64  AKKYKVTDKEIDKKL--KEYKTQLGDQYSALKEQYGEDYL-------KEQVKYELLTQKA 114

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
            E  I++++D+++  +E  K K  +  I      +  ++  A+E  + LKKG+KF  LA+
Sbjct: 115 AEDNIKVTDDDVKEYWEGLKGKIHTSHI------LVADKDTAEEVEKKLKKGEKFEDLAK 168

Query: 302 EQGKSLSDIS---LGSFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           E     S  +   LG  SK+    D + + + F L KKG+ +  +   FGY I
Sbjct: 169 EYSTDSSANNGGDLGWISKDDTQLDATFSKAAFKL-KKGEVSDPVKTQFGYHI 220


>gi|113867525|ref|YP_726014.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
 gi|113526301|emb|CAJ92646.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
          Length = 264

 Score = 37.0 bits (84), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 10/155 (6%)

Query: 228 EYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           E  R++ +   V E   K   ++D EL+ +Y+K K ++ + +      ++   + +A   
Sbjct: 88  EQARLNVLAGAVFEDYVKTHGASDAELRKQYDKIKSQFGNGKEYHARHILVEKEADAKAI 147

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV 341
              +K G KF  +A+   K     + G     + S  Y+P+ S A    +  KKG  T  
Sbjct: 148 IAKIKGGAKFEDMAKASSKDPGSAANGGDLDWANSSSYVPEFSAA---MTGLKKGQLTDT 204

Query: 342 -IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            +   FG+ I  + +++ +   SF+EVK  +   +
Sbjct: 205 PVKTQFGWHIIELVDVRDAKIPSFEEVKPQLTQML 239


>gi|171058521|ref|YP_001790870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
 gi|170775966|gb|ACB34105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
          Length = 275

 Score = 37.0 bits (84), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 18/176 (10%)

Query: 228 EYKRISYILFDV-HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           E  R S ++ ++ +E +KK  +++ E++AEY+K K      E    + ++   + EA   
Sbjct: 100 EIARQSLLIRELFNEYQKKNPVTDAEIKAEYDKVKSGAGEKEYH-AKHILVEKEDEAKAL 158

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFT-P 340
              LK G KF +LA++  K       G     +    Y+P+ S A  +  L +KG +T  
Sbjct: 159 IAELKGGAKFDELAKKASKDPGSAQNGGDLDWAAPANYVPEFSQA--MVKL-EKGKYTET 215

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN---QMRITKASE----KVKEDYK 389
            +   FGY I  + +++ +     +EVK  +     Q ++ K  E    K K DYK
Sbjct: 216 AVKSQFGYHIILLDDVREAQFPPLEEVKAQLEQRLAQQKMGKYREELRSKAKTDYK 271


>gi|296445269|ref|ZP_06887228.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
 gi|296257224|gb|EFH04292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
          Length = 335

 Score = 37.0 bits (84), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 16/145 (11%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ------------SLKKGKKF 296
           S +ELQ  Y+ N+  +  P    +  +   + K+AD A +             LK G  F
Sbjct: 161 SEEELQKAYDANRSSFVVPRQFQLGHIFVQSPKDADRATEDKAKKTLEDIQRKLKSGADF 220

Query: 297 IQLAEEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
             +A+ Q ++     LG  ++  I P++     +  L  KG  +  I    G+    + +
Sbjct: 221 AAVAKAQSEAKDGGELGWLAEGQIRPEIR--TRVMGLV-KGAVSEPIQLDDGWHFVKLID 277

Query: 356 IKPSFTVSFQEVKKDIANQMRITKA 380
            K S T    E ++ +A QMR+ +A
Sbjct: 278 TKASTTRPLAEAREQLAQQMRVERA 302


>gi|52079482|ref|YP_078273.1| molecular chaperone PrsA [Bacillus licheniformis ATCC 14580]
 gi|52784844|ref|YP_090673.1| hypothetical protein BLi01072 [Bacillus licheniformis ATCC 14580]
 gi|319646731|ref|ZP_08000960.1| PrsA protein [Bacillus sp. BT1B_CT2]
 gi|52002693|gb|AAU22635.1| molecular chaperone PrsA [Bacillus licheniformis ATCC 14580]
 gi|52347346|gb|AAU39980.1| PrsA [Bacillus licheniformis ATCC 14580]
 gi|317391319|gb|EFV72117.1| PrsA protein [Bacillus sp. BT1B_CT2]
          Length = 286

 Score = 37.0 bits (84), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 94/213 (44%), Gaps = 22/213 (10%)

Query: 170 GGMRPSNLLLDQA---KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
            G    N+L+ Q     ++   ++ +D  +  N +  ++ D  N ++ Q  E +      
Sbjct: 49  AGADALNMLVQQKVLDDKYDVSDKEIDKKL--NEYKKSMGDQLNQLIDQKGEDF------ 100

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
              ++I Y L      +  I++++D+++  Y+  K K        +  ++   +K A+E 
Sbjct: 101 -VKEQIKYELLMQKAAKDNIKVTDDDVKEYYDGLKGKIH------LSHILVKEKKTAEEV 153

Query: 287 FQSLKKGKKFIQLAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + LKKG+KF  LA+E    G +     LG   K+   D     + F+L K G+ +  + 
Sbjct: 154 EKKLKKGEKFEDLAKEYSTDGTAEKGGDLGWVGKDDNMDKDFVKAAFAL-KTGEISGPVK 212

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             FGY I      +  +    +E+KK++  Q +
Sbjct: 213 SQFGYHIIKKDEERGKYEDMKKELKKEVQEQKQ 245


>gi|220932053|ref|YP_002508961.1| peptidyl-prolyl cis-trans isomerase [Halothermothrix orenii H 168]
 gi|219993363|gb|ACL69966.1| peptidyl-prolyl cis-trans isomerase [Halothermothrix orenii H 168]
          Length = 495

 Score = 37.0 bits (84), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 15/139 (10%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----DEAFQSLKKGKKFIQL 299
           K +E+S DE++  YEK       P +  V  +    +KEA    ++A + L++GK F ++
Sbjct: 169 KGVEVSEDEIREAYEK-----VRPALIAV-NIEGEKKKEARAKIEKALKELEEGKAFGEV 222

Query: 300 AEEQGK-SLSDISLGSFSKE--YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A +     L D  LG   +   ++P   L D  F L +KG  + +I G  GY I  V + 
Sbjct: 223 AAKYSDLKLKDGDLGFIGRNNGFLPQEVL-DKAFEL-EKGKTSDIIEGEKGYYIVKVIDK 280

Query: 357 KPSFTVSFQEVKKDIANQM 375
           K +    F++ ++++ +Q+
Sbjct: 281 KLARGEEFEKSREELKDQL 299


>gi|110803835|ref|YP_699739.1| peptidylprolyl isomerase [Clostridium perfringens SM101]
 gi|123047143|sp|Q0SQ68|PRSA_CLOPS RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|110684336|gb|ABG87706.1| putative foldase protein PrsA [Clostridium perfringens SM101]
          Length = 342

 Score = 37.0 bits (84), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 20/158 (12%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTV--EQLVFPNQKEADEAFQSLKKGKK-----F 296
           K I+++++E Q  Y++NK K F  + + V    L+F N++EA +A+  ++ GK      F
Sbjct: 166 KDIKVTDEEAQKYYDENK-KQFEVQAKGVLARHLLFENEEEAQKAYDEIQSGKTTFNDLF 224

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVS------LADSIFSLAKKGDFTPVIHGSFGY-V 349
            +    + +  + I+  SF    +PD +        + + SL K+G+ +  I   FGY +
Sbjct: 225 TKYENNKLEKKTPIA-ESF---VVPDENAQVAKEFVEGLKSL-KEGEISKPIKTQFGYHI 279

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           I   +  +    + F EVK  I   ++  K S+K+K D
Sbjct: 280 IQAGATYEKGAQLPFNEVKSQIIQILKQQKDSQKLKSD 317


>gi|149175489|ref|ZP_01854110.1| hypothetical protein PM8797T_18534 [Planctomyces maris DSM 8797]
 gi|148845757|gb|EDL60099.1| hypothetical protein PM8797T_18534 [Planctomyces maris DSM 8797]
          Length = 856

 Score = 37.0 bits (84), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 27/157 (17%)

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-NLLLDQAKRFY- 186
           +NK S   F     + G  E +  D +   L       M    +RP  +L  DQ   FY 
Sbjct: 216 NNKLSRKAFQETCQQLGKTEGQIYDIFRDQLQARLAFQM----LRPEVSLTPDQYWNFYK 271

Query: 187 -FENRS-VDYIVLNNR----HVPAIADPSNAVLTQWFEKYKDNY-----------RAPEY 229
            F  R  ++ + L  +     VPA   PS+A    +FE YK  +           R P+ 
Sbjct: 272 KFNVREELELVALPVKDFEGEVPA---PSDAEKKAFFETYKTVFPGEKGPGSPGLRQPQK 328

Query: 230 KRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYF 265
            ++ Y++ D  + EK++  I++ E+ A YE NKE+ +
Sbjct: 329 VQVEYLMADYVDTEKQVPPITDKEIAAFYEDNKERLY 365


>gi|327438069|dbj|BAK14434.1| parvulin-like peptidyl-prolyl isomerase [Solibacillus silvestris
           StLB046]
          Length = 324

 Score = 37.0 bits (84), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 5/144 (3%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           I +  +E +  YE NK  Y  P       ++  ++++A+   + LK G  F  LA E   
Sbjct: 161 IVVKENEAKKYYEDNKSIYNIPTTHRTSIIIVNSKEDAERVEKELKDGSDFAVLAREHSL 220

Query: 306 SLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
             +  SLG       S +   D ++   +  L +K    P +     Y I  V+      
Sbjct: 221 DTASASLGGDIGFISSSQSAVDPAILPEVEKLKEKETSKPFVLSDGRYAIVKVTENMEGQ 280

Query: 361 TVSFQEVKKDIANQMRITKASEKV 384
           + SF EV+  +  Q+ + + S  +
Sbjct: 281 SFSFDEVEGHVKRQLALEQLSPSI 304


>gi|116872876|ref|YP_849657.1| peptidyl-prolyl isomerase (post-translocation molecular chaperone)
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741754|emb|CAK20878.1| peptidyl-prolyl isomerase (post-translocation molecular chaperone)
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 294

 Score = 37.0 bits (84), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 11/144 (7%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            + Y L      E  +++S+ +L+  Y     K + P+I TV  ++  ++  A E    L
Sbjct: 105 NLEYNLLVQKATEANMKVSDSKLKTYY-----KTWEPDI-TVRHILVDDEATAKEIQTKL 158

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347
           K G+KF  LA+E     +  + G     + P   D +   + ++L  K D + ++  ++G
Sbjct: 159 KNGEKFSDLAKEYSTDTATKTNGGLLDPFGPGEMDETFEKAAYALENKDDISGIVKSTYG 218

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDI 371
           Y +  +  +K +   S+++ K ++
Sbjct: 219 YHLIQL--VKKTEKGSYEKEKANV 240


Searching..................................................done


Results from round 2




>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040835|gb|ACT57631.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 631

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 631/631 (100%), Positives = 631/631 (100%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW
Sbjct: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA
Sbjct: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD
Sbjct: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH
Sbjct: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA
Sbjct: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF
Sbjct: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF
Sbjct: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE
Sbjct: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE
Sbjct: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
           NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK
Sbjct: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600

Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
           DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK
Sbjct: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631


>gi|315122544|ref|YP_004063033.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495946|gb|ADR52545.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 632

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 377/633 (59%), Positives = 486/633 (76%), Gaps = 3/633 (0%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLEIIRKASRTWVAKIFLVVLFVPF++WG+SDA FS SG STVVSVG QK+P S+FI  W
Sbjct: 1   MLEIIRKASRTWVAKIFLVVLFVPFIVWGVSDAFFSFSGKSTVVSVGNQKIPLSAFIQIW 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            QEL  +S++IGF V  ERARS  LDKKI ++LV+GA +DQFIED GLEA   RV+  I 
Sbjct: 61  TQELDALSRQIGFAVPPERARSAELDKKITEHLVAGAAIDQFIEDTGLEAPDSRVFEFIG 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P+F+GKD KFSH+VF+S+LA+EG++EKEY++ Y KM+SR+D+  MF+GG + S  L +
Sbjct: 121 SQPIFYGKDGKFSHEVFLSKLAQEGVSEKEYVETYKKMISRSDIAEMFIGGDKSSRFLAE 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R Y ENR+++Y+VLN   VPA+ DP+  VL +WF K+K NYRAPEYK  SYI  DV+
Sbjct: 181 QMMRHYSENRTIEYVVLNAHDVPAVVDPAPVVLAEWFAKFKGNYRAPEYKSFSYIALDVN 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EKEK + ++  EL++EYEKNK +YFSPEIRTVEQLVFPNQKEA+EA +SLKKGKKFIQLA
Sbjct: 241 EKEKNVVVTESELRSEYEKNKNQYFSPEIRTVEQLVFPNQKEAEEALKSLKKGKKFIQLA 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +E+GKSLSDISLGSFSKEYIPD SLAD IF+LAK+GD+T +IHGSFGYVIAHVS IKPSF
Sbjct: 301 KEKGKSLSDISLGSFSKEYIPDPSLADPIFALAKEGDYTSLIHGSFGYVIAHVSRIKPSF 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T  F+++KK I +++R+ KAS+ V E+YK+ ++ L+ G +M +I+ +EK    DLP +++
Sbjct: 361 TTPFEQIKKSIEHKVRLAKASQVVLEEYKKAQDLLSSGKTMKDIATKEKFSFGDLPPLNY 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D+K + V  IPYK+ LL R+F ++D L  D+T+ LPDGSY+  ++KE IPARDRKLE
Sbjct: 421 LGMDMKNRPVQKIPYKDHLLSRIFNQEDALVTDNTIQLPDGSYVIFKVKEVIPARDRKLE 480

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM--D 538
           EVLT+VKKDWK+++  E V +KA  LVL  +K GK+F D+  +L   +   + I RM  +
Sbjct: 481 EVLTEVKKDWKSIQQTEAVLNKAQNLVLACNK-GKSFADMASSLRKFISVKSNITRMTKE 539

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
           +E      DGIS+VFSGPV MVK FPI+NG   VVFKV  SK+ P+ +K KFI  L +M+
Sbjct: 540 SEEGILENDGISRVFSGPVGMVKSFPIKNGAEQVVFKVVRSKINPMDDKKKFILSLEKMI 599

Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
            KD+LDS IAYL+ QY V V+++LI +Y D  K
Sbjct: 600 GKDMLDSSIAYLRQQYPVYVNESLITKYFDQNK 632


>gi|86357790|ref|YP_469682.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CFN 42]
 gi|86281892|gb|ABC90955.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CFN 42]
          Length = 646

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 210/630 (33%), Positives = 359/630 (56%), Gaps = 7/630 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M  ++R+A++TWVAK+ L++L   F IWG+S  L S   S+TVV+VG QKV  + F  ++
Sbjct: 17  MFHLLRRAAQTWVAKLLLLLLVASFGIWGISRELISGGSSTTVVTVGDQKVGVTEFQLAY 76

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  I Q+ G  +  E+AR+ G+++++L  LV+GA+LDQ  ED+ L     R+   I 
Sbjct: 77  QRQVTSIGQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 136

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F  ++FVSRL   GI + +YI   +K+  R+ +V     G      L+D
Sbjct: 137 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLID 196

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+RS+DY++L N ++  I  P++ VL  WFE  K  YRAPEY+++ Y+     
Sbjct: 197 ALKLYGDESRSIDYLLLTNANIEPIKAPADDVLASWFEGVKQRYRAPEYRKLIYLKLQPA 256

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D+++  +EK K+ Y +PE RT+EQL F ++  A  A  +LK G  F QL 
Sbjct: 257 DIADAATVTDDQIREAFEKGKDSYRTPESRTIEQLTFASKDLATAAETALKGGTSFDQLL 316

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G  TPV+ GSFG VI  ++NIKP  
Sbjct: 317 TDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKPET 376

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             +F EVK+DI  Q+ ++ AS++V   + R+E+  A G+++++I+ + K+ ++ +  VD 
Sbjct: 377 VKNFDEVKEDIRKQLALSNASQEVINVHDRIEDMRAGGSTLEDIAGQLKLKAVTVDAVDA 436

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GKEV  +P K+QLL   F  +  +     + + +  Y+W  ++E  P RDR + 
Sbjct: 437 TGVDKDGKEVKDLPAKQQLLGEAFKTEVGVDA-SPLPIGNDGYVWFNVREITPDRDRPIA 495

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV     +DW   +   E++ KA +L  +  K G    DI   LG ++ + + I R   +
Sbjct: 496 EVREKAVEDWTAEQQKAELAKKAEELKAQAQK-GAALADIAAPLGIAVESKSGITR-STD 553

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQ 596
           +   G   +   FSGPV+ V      +  + ++ KVT     P  +    +D  ++ +  
Sbjct: 554 DPVLGRAAVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTSDVLNNRDAQLTAMAN 613

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
               D+LD ++  L++QY  +++  L ++ 
Sbjct: 614 AAGDDILDQMVNLLQTQYGASINQTLAEQA 643


>gi|190891851|ref|YP_001978393.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CIAT 652]
 gi|190697130|gb|ACE91215.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CIAT 652]
          Length = 630

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 212/629 (33%), Positives = 357/629 (56%), Gaps = 7/629 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   +R+A++TWVAK+ L++L   F IWG+S  L S   S+TVV+VG Q V  + F  ++
Sbjct: 1   MFHFLRRAAQTWVAKLLLLLLVASFGIWGVSRELISGGSSTTVVTVGDQHVGVNEFHLAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +SQ+ G  +  E+AR+ G+++++L  LV+GA+LDQ  ED+ L     R+   I 
Sbjct: 61  QRQVASLSQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F  ++FVSRL   GI + +YI   +K+  R+ +V     G      L+D
Sbjct: 121 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+RSVDY++L N ++  I  P++ VL  WFE  K  YRAPEY++I+Y+     
Sbjct: 181 ALKLYGDESRSVDYLLLTNANIEPIKAPADDVLAAWFEGVKQRYRAPEYRKIAYLKLQPA 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D+++  ++K K+ Y +PE RT+EQL F ++  A  A  +LK G  F QL 
Sbjct: 241 DIADAATVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLV 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G  TPV+ GSFG VI  ++NIK   
Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKAET 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T +F EVK +I  Q+ ++ AS++V   +  +E+  A G ++++I+ + K+ ++ +  VD 
Sbjct: 361 TKNFDEVKDEIRKQLALSNASQEVINVHDHIEDLRAGGATLEDIAGQLKLNAVTVDAVDA 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GKEV  IP K+QLL   F  +  +     + + +  Y+W  ++E  P RDR + 
Sbjct: 421 TGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPIA 479

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV     +DW   +   E++ KA++L  E  K G    DI   LG ++ + + I R   +
Sbjct: 480 EVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIATPLGIAVESKSGITR-STD 537

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
           +   G  G+   FSGPV+ V      +  + ++ KVT     P    +  +D  ++ +  
Sbjct: 538 DPVLGRAGVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTGDVLNNRDAQLTAMAN 597

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
               D+LD ++  L++QY   V+  L ++
Sbjct: 598 AAGDDILDQMVNLLQTQYGAQVNQTLAEQ 626


>gi|158423833|ref|YP_001525125.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Azorhizobium caulinodans ORS 571]
 gi|158330722|dbj|BAF88207.1| PPIC-type PPIASE domain protein [Azorhizobium caulinodans ORS 571]
          Length = 638

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 160/631 (25%), Positives = 308/631 (48%), Gaps = 6/631 (0%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ +RK +   +AK+FL+VL V F++WG+S    + S   TV  +G  ++   ++   + 
Sbjct: 11  LQNLRKGASGLIAKVFLLVLTVSFVLWGISGVFTNYSTG-TVAEIGGTQISTDAYRQQYL 69

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            ++  I ++ G  +  ++AR+ G D+++L+ +++ ATLD+    +GL      +   I  
Sbjct: 70  DQIQRIGRQAGRAITPDQARAFGFDRQVLNQMITEATLDEAARKLGLGMSDALIADSIRD 129

Query: 122 SPLFHGKD-NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           +P         F    F   L   G+ E+ ++    K + R  ++    GG R   +L  
Sbjct: 130 NPALRPPGATAFDPAYFQQLLQANGLTEQRFLASERKRVLRQQLIESL-GGARAPEVLKT 188

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               F  E R+V Y+ + +  VPA A P++  L  +++ +K  +RAPEY++++ ++    
Sbjct: 189 AVHSFENEERAVSYLDVTSSSVPAPAAPTDEQLKAYYDGHKVVFRAPEYRKLTLLVLTPA 248

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                I+IS+ + +A Y++N  ++ +PE R V+Q+VFP++ +A  A   +K G  F  +A
Sbjct: 249 TLAPWIQISDADAKAAYDRNAARFGTPEQRDVQQIVFPSEADAKAALDKIKGGTSFADIA 308

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           + +G S  D +LG  +K  I D  +AD+ F+L   G  +  + G FGY + HV+ I P+ 
Sbjct: 309 KARGLSDKDTNLGLVAKSAIIDPKVADAAFALPADG-TSDPVQGRFGYALVHVTTIVPAT 367

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
              F EV+  +   + + +A  ++ + +  +E+  + G S+ E +++  +    +  VD 
Sbjct: 368 VKPFAEVEAGLRRDLALERARRELLDKHDAIEDERSSGASLSETAQKLGLTPEVVDAVDR 427

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           +G++  G EV  IP +  +L   F     +  D      +G Y+W  + E  P+R+R  +
Sbjct: 428 SGREPSGAEVTDIPDRVNVLSAAFSSRPGVDNDPIQLAQNGGYVWFDVNEVTPSRERPFD 487

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   W   +    V +KA  L+ E  + GK+  D+    G  + T + + R   E
Sbjct: 488 EVREQVASRWSEDEVVRAVEAKAKGLLTEL-EAGKSMADVASANGLEVKTASGLKRGRAE 546

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
              F  + +++VF   +              +VF+VT  +  P     +  + L Q +  
Sbjct: 547 GD-FTTEAVAKVFGVALNGYGVALGTANAEQLVFQVTKVESPPSANDIRIDNQLQQQVEN 605

Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
           D+L   +  L+ Q  +T++   +Q+ +   +
Sbjct: 606 DILQQYLTALQGQIGLTINQRAVQQAVGANQ 636


>gi|90423968|ref|YP_532338.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
 gi|90105982|gb|ABD88019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
          Length = 662

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 176/637 (27%), Positives = 299/637 (46%), Gaps = 15/637 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IRKAS  WV K  +++    L + F +WG++D +F   G ST+  +G  ++    F
Sbjct: 30  MLRGIRKASSNWVGKTIMIIVMSVLILSFAVWGIAD-IFKGFGQSTLAKIGSTEISTEQF 88

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              + + L  I ++ G  +  ++AR+ G+D+++L   V+ A LD+    IGL        
Sbjct: 89  RQLYTERLQQIGRQFGRPLTQDQARAFGIDRQVLQQAVAEAALDEDARRIGLGQSDAETM 148

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G +  F    F   + + G  E+ YI    K+  R  + G     + P  
Sbjct: 149 RTIVSDPNFRGTNGGFDRARFAQAIRQFGYTEQRYIAEQRKVSLRRQIAGTLTAELEPPK 208

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            LLD   RF  E RS+DY+ L+  H   IA PS  VL  ++  +K  +RAPEY++IS++ 
Sbjct: 209 TLLDALTRFQNEQRSIDYVKLDANHAGTIAPPSPEVLAAYYADHKTQFRAPEYRKISFVA 268

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K   +S+++ +  YE  ++K+ +PE R + Q+VFPN +EA  A   +  G  F
Sbjct: 269 LTPEAVAKWTTVSDEDAKKVYEARRDKFSTPERRQITQIVFPNAEEAQAARAKITGGLSF 328

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             LA+E+G S +D  LG  SK  I D ++AD+ F+L    D +  I G FG  +  V  I
Sbjct: 329 DDLAKERGLSPADADLGLVSKAEILDPAVADAAFALPAN-DVSQPIPGRFGVTLLKVGKI 387

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P    SF+ V   +   + I KA   + + + ++E+    G S+ E +++  + ++ + 
Sbjct: 388 EPGSQQSFESVAPALKRDIAIDKARASIADLHNKMEDARGGGASVVEAAQKLGLAAVTIE 447

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            +D +G+   G    AIP    L    F  D  +  D       G Y+W  +    P+R+
Sbjct: 448 ALDRSGRAPDGNP-TAIPQGLDLASAAFSSDVGVDNDALAF--GGGYVWFDVLGVTPSRE 504

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R LEEV   V+  W+  + +  +  +A  +V +    GK   D+    G    T     R
Sbjct: 505 RSLEEVKPQVEARWRDEQISTRLRDQATDMVQKVEAGGK-LADVAAAAGLKTETATAFKR 563

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFIS 592
            D          +   F    + V   P  +G  ++VF+VT+  V PV    ++  K   
Sbjct: 564 -DGSVAGLPSSVVEAAFRTAKDGVGQAPGLSGGEWIVFRVTDVSVPPVDLASEDAAKLKD 622

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
            L + +  +LL   +A L+++    ++++ + +    
Sbjct: 623 TLQRRLADELLAQYVARLETEIGTKINESAVAQATGA 659



 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 1/148 (0%)

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
                   EQ+    + +A +  Q ++ G K   +A   G      +            S
Sbjct: 513 QVEARWRDEQISTRLRDQATDMVQKVEAGGKLADVAAAAGLKTETATAFKRDGSVAGLPS 572

Query: 325 -LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
            + ++ F  AK G           +++  V+++         E    + + ++   A E 
Sbjct: 573 SVVEAAFRTAKDGVGQAPGLSGGEWIVFRVTDVSVPPVDLASEDAAKLKDTLQRRLADEL 632

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIV 411
           + +   RLE  +    +   +++     
Sbjct: 633 LAQYVARLETEIGTKINESAVAQATGAA 660


>gi|209549414|ref|YP_002281331.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535170|gb|ACI55105.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 630

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 204/630 (32%), Positives = 359/630 (56%), Gaps = 7/630 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M  I+R+A++TWVAK+ +++L   F IWG+S +L + S S+TVV+VG Q V  + F  ++
Sbjct: 1   MFHILRRAAQTWVAKLLMLLLVASFGIWGVSRSLITGSNSTTVVTVGDQHVDVNEFHLAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  + Q+ G  +  E+AR+ G+++++L  LV+GA+LDQ  ED+ L     R+   IA
Sbjct: 61  QRQVASLGQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + KF  ++F+SRL    I + +YI   +K+  R+ VV     G      L+D
Sbjct: 121 DDPAFKAVNGKFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLID 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+RS+DY++L N ++  I  P++ VL  WF+  K  Y+APEY+++ Y+     
Sbjct: 181 ALKLYGNESRSIDYLLLTNANIEPIKAPADDVLAAWFDGVKQRYQAPEYRKLVYLSLQPA 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D++   ++K+K+ Y +PE RT+EQL F ++  A  A  +LK G  F QL 
Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFTSKDLAVAAETALKGGTSFDQLV 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G  TPV+ GSFG VI  ++NIKP  
Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVEGSFGSVILRITNIKPET 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T +F EVK+DI  Q+ ++ AS++V   + R+E+  A G ++++I+ + K+ ++ +  VD 
Sbjct: 361 TKNFDEVKEDIRKQLALSNASQEVINVHDRIEDLRAGGATLEDIAGQLKLKAVTVDAVDM 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GKEV  IP K+QLL   F  +  +     + + +  Y+W  ++E  P R+R + 
Sbjct: 421 TGADKDGKEVKDIPVKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPTRERPVA 479

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV     +DW   +  +   +K  + +   + +G    DI   LG ++ + + + R   +
Sbjct: 480 EVREKAVEDWTAEQ-QKAELAKKAEALKAEAAKGTALADIATPLGIAVESKSGVTR-ATD 537

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQ 596
           +   G  G++  FSGPV+ V      +  + ++ KVT     P  +    +D  I+ +  
Sbjct: 538 DPVLGRAGVTAAFSGPVDAVASAVGADPSTQILMKVTEVNSEPTSDALNNRDAQITAMAN 597

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
               D+LD ++  L++QY   ++  L ++ 
Sbjct: 598 AAGDDILDQMVNLLQTQYGAQINQTLAEQA 627


>gi|327192898|gb|EGE59819.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CNPAF512]
          Length = 630

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 210/629 (33%), Positives = 355/629 (56%), Gaps = 7/629 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   +R+A++TWVAK+ L++L   F IWG+S  L S   S+TVV+VG Q V  + F  ++
Sbjct: 1   MFHFLRRAAQTWVAKLLLLLLVASFGIWGVSRELISGGSSTTVVTVGDQHVGVNEFHLAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +SQ+ G  +  E+AR+ G+++++L  LV+GA+LDQ  ED+ L     R+   I 
Sbjct: 61  QRQVASLSQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F  ++FVSRL   GI + +YI   +K+  R+ +V     G      L+D
Sbjct: 121 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+RSVDY++L N ++  I  P++ VL  WFE  K  YRAPEY++I+Y+     
Sbjct: 181 ALKLYGDESRSVDYLLLTNANIEPIKAPADDVLAAWFEGVKQRYRAPEYRKIAYLKLQPT 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D+++  ++K K+ Y +PE RT+EQL F ++  A  A  +L  G  F QL 
Sbjct: 241 DIADAATVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALNSGTSFDQLV 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G  T V+ GSFG VI  ++NIK   
Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTSVVDGSFGPVILRITNIKAET 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T +F EVK +I  Q+ ++ AS++V   + R+E+  A G ++++I+ + K+ ++ +  VD 
Sbjct: 361 TKNFDEVKDEIRKQLALSNASQEVINVHDRIEDLRAGGATLEDIAGQLKLNAVTVDAVDA 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GKEV  IP K+QLL   F  +  +     + + +  Y+W  ++E  P RDR + 
Sbjct: 421 TGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPIA 479

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV     +DW   +   E++ KA++L  E  K G    DI   LG ++ + + I R   +
Sbjct: 480 EVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIATPLGIAVESKSGITR-STD 537

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
           +   G  G+   FSGPV+ V      +  + ++ KVT          +  +D  ++ +  
Sbjct: 538 DPVLGRAGVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQSTGDVLNNRDAQLTAMAN 597

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
               D+LD ++  L++QY   V+  L ++
Sbjct: 598 AAGDDILDQMVNLLQTQYGAQVNQTLAEQ 626


>gi|241204737|ref|YP_002975833.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858627|gb|ACS56294.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 630

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 208/630 (33%), Positives = 362/630 (57%), Gaps = 7/630 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M  I+R+A++TWVAK+ L++L V F  WG+S  L +   S+TVV+VG Q V  + F  ++
Sbjct: 1   MFHILRRAAQTWVAKLLLLLLVVSFGAWGVSHQLLTGGNSTTVVTVGDQHVDVNEFHLAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +SQ+ G  +  E+AR+ G+++++L  LV+GA+LDQ  ED+ L     R+   IA
Sbjct: 61  QRQVANLSQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F  ++F+SRL    I + +YI   +K+  R+ VV     G      L+D
Sbjct: 121 DDPAFKAVNGRFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+RS+DY++L N ++  I  P++ VL  WFE  K  YRAPEY++++Y+     
Sbjct: 181 ALKLYGDESRSIDYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKLAYLKLQPA 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D++   ++K+K+ Y +PE RT+EQL F ++  A  A  +LK G  F QL 
Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFASKDLATAAETALKSGTSFDQLV 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ SD+ LG F+K+ +PD ++AD+ F++++ G  TPV+ GSFG VI  V+NIK   
Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSRDGGTTPVVDGSFGSVILRVTNIKSET 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             +F EVK+DI  Q+ ++ AS++V   + R+E+  A G+++++I+ + K+ ++ +  VD 
Sbjct: 361 AKNFDEVKEDIRKQLSLSNASQEVINVHDRIEDLRAGGSTLEDIAGQLKLKAVTVDAVDM 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  G+EV  IP K+QLL   F  +  +     + + +  Y+W  ++E  P RDR + 
Sbjct: 421 TGADKDGQEVKDIPVKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPVA 479

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV     +DW   +   E++ KA+ L  E +K+G    DI   LG ++ + + + R   +
Sbjct: 480 EVREKAVEDWTAEQQKAELAKKADALKAE-AKKGTALADIATPLGIAVESKSGVTR-STD 537

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
           +   G  G++  FSGP++ V      +  + ++ KVT     P    +  +D  I+ +  
Sbjct: 538 DAVLGRAGVTAAFSGPLDTVASAVGADPSTQILMKVTEVNTQPTGDVLNNRDAQITAMAN 597

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
               D+LD ++  L++QY   ++  L ++ 
Sbjct: 598 AAGDDILDQMVNLLQTQYGAEINHTLAEQA 627


>gi|116252238|ref|YP_768076.1| peptidyl-prolyl cis-trans isomerase D [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256886|emb|CAK07980.1| putative peptidyl-prolyl cis-trans isomerase D [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 630

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 209/630 (33%), Positives = 361/630 (57%), Gaps = 7/630 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M  I+R+A++TWVAK+ L++L   F +WG+S  L S   S+TVV+VG Q V  + F  ++
Sbjct: 1   MFHILRRAAQTWVAKLLLLLLVASFGVWGVSHELLSGGNSTTVVTVGDQHVDVNEFHLAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +SQ+ G  +  E+AR+ G+++++L  LV+GA+LDQ  ED+ L     R+   IA
Sbjct: 61  QRQVANLSQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F  ++F+SRL   GI + +YI   +K+  R+ VV     G      L+D
Sbjct: 121 DDPAFKAVNGRFDRELFISRLQNAGIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+RSV+Y++L N ++  I  P++ VL  WFE  K  YRAPEY+++ Y+     
Sbjct: 181 ALKLYGDESRSVEYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKLVYLKLQPG 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D++   ++K+K+ Y +PE RT+EQL F ++  A  A  +LK G  F QL 
Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFASKDLAAAAETALKSGTSFDQLV 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ SD+ LG F+++ +PD ++AD+ F++++ G  TPV+ GSFG VI  V+NIK   
Sbjct: 301 SDQGKTASDVLLGEFTEDKVPDQAVADAAFAVSRDGGTTPVVDGSFGPVILRVTNIKSET 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             +F EVK+DI  Q+ ++ AS++V   + R+E+  A G+++++I+ +  + ++ +  VD 
Sbjct: 361 AKNFDEVKEDIRKQLALSNASQEVINVHDRIEDLRAGGSTLEDIAGQLNLKAMTVDAVDM 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GKEV  IP K+QLL   F  +  +     + + +  Y+W  ++E  P RDR + 
Sbjct: 421 TGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPVT 479

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV     +DW   +   E++ KA+ L  E +K+G    DI   LG ++ + + + R   +
Sbjct: 480 EVREKAVEDWTAEQQKAELAKKADALKAE-AKKGTALADIATPLGIAVESKSGVTR-STD 537

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
           +   G  G++  FSGPV+ V      +  + ++ KVT     P    +  +D  I+ +  
Sbjct: 538 DAVLGRAGVTAAFSGPVDTVASAVGADPSTQILLKVTEVNTQPTGDVLNNRDAQITAMAN 597

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
               D+LD ++  L++QY   ++  L ++ 
Sbjct: 598 AAGDDILDQMVNLLQTQYGAQINQTLAEQA 627


>gi|92117281|ref|YP_577010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           hamburgensis X14]
 gi|91800175|gb|ABE62550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           hamburgensis X14]
          Length = 635

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 167/638 (26%), Positives = 310/638 (48%), Gaps = 13/638 (2%)

Query: 1   MLEIIRKASRTWVAKIFL----VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IR AS  W+ KI +     +L V F IWG++D +F   G S + +VG  ++    F
Sbjct: 1   MLRGIRNASSNWLGKILMSIVMGLLIVAFGIWGIAD-IFHGFGQSNLATVGSTEISTEQF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              +   L  ++++ G  ++ ++ R++GLD+++L  +++ A LD+     GL A    + 
Sbjct: 60  RQIYNDRLQQLARQFGRSLSPDQVRALGLDRQVLQQVIAEAALDEDARRKGLNASDDEIR 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            +I   P F G ++ F    F   + + G  E+ Y+        R ++ G    G+ PS 
Sbjct: 120 RQIMSDPNFKGANDAFDPARFAGLIRQMGYTEQRYVTEQRHTTLRREIAGTVAAGVEPSK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            LL+    F  E R++DY+ L       I  P+   L  +F+ +K  +RAPE+++I++++
Sbjct: 180 TLLEMLNHFQNEQRTIDYVKLGVPQAGTIDPPTPEQLASYFDAHKVQFRAPEFRKIAFVV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K   +S+++ +  YE+ K+K  +PE R + Q+VFPN  EA  A   +  G  F
Sbjct: 240 MTPEGIAKTTAVSDEDAKKAYEQQKDKLSTPEKRQLWQIVFPNVTEAQAARSKIAGGASF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             +A+E+  + SD+ LG  SK  I D ++A++ FSL K  + +  I G FG  +  V  I
Sbjct: 300 DDIAKERNLAASDVDLGIISKSEIIDPAVAEAAFSL-KADEVSQPIQGRFGVALVKVGKI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P    ++  V   + + + + +A  +V + + ++E+    G S+ E +++  + ++ + 
Sbjct: 359 EPGNQPTYDSVAAKLKHDIAVDRARAEVNDLHNKMEDERGGGASVLEAAKKLGLTAVTID 418

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            VD +G+   GK V  IP +  L+ + F  D  +  + T+ + D  ++W  +    P+RD
Sbjct: 419 AVDRSGRTPDGKPVTGIPPQVDLIAQAFASDVGVD-NETLQVGDNGFVWFDVLGVTPSRD 477

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L+EV   V+  W+  + +  + +KA  +V +  + GK   D    LG  +   + + R
Sbjct: 478 RTLDEVKDKVETGWRDEQISSRLMTKATDMVHKLDQGGK-LADEAAGLGLKVENASALKR 536

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFIS 592
            D          I+ VF          P   G  +VVF+VT+ KV  +     E  K   
Sbjct: 537 -DATAAGLPAAVIAAVFRTAKGGAGQAPGAGGEEWVVFRVTDVKVPSLDLASDEMKKLKD 595

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
            + + ++ + +   IA L+++   TV+   + +     
Sbjct: 596 SIQRSLSDEDIGQYIARLETEIGTTVNQAAVAQITGAN 633


>gi|86749913|ref|YP_486409.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris HaA2]
 gi|86572941|gb|ABD07498.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris HaA2]
          Length = 633

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 158/637 (24%), Positives = 305/637 (47%), Gaps = 15/637 (2%)

Query: 1   MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IR AS  WV K    I + VL + F +WG++D +F   G ST+ ++G  ++    F
Sbjct: 1   MLRGIRNASSNWVGKTIMMIVMGVLILSFAVWGIAD-IFRGFGRSTLATIGGTEITTEQF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             ++   L  I ++ G  +  ++AR+ G+D+++L  +++ A LD+    +GL        
Sbjct: 60  RQTYNDRLQQIGRQFGRPLTPDQARAFGIDRQVLQQVIAEAALDEDARRLGLGQSDEETM 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G    F  + F   + + G  E+ YI    K+  R  + G    G+ PS+
Sbjct: 120 KSILNDPNFKGVGGAFDPNRFQQVIRQFGFTEQRYIAEQRKVALRRQIAGTITAGLAPSS 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +L  A +F  E R+++Y+ L +  V  I  PS   L  ++E +K  +RAPEY++++++ 
Sbjct: 180 TMLQVASQFQNEQRAIEYLKLTDAQVGTIDPPSPEALAAYYEDHKTQFRAPEYRKLAFVT 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K  ++S+ + +  +++ K+K  +PE R V Q+VFP+ +EA  A   + +G  F
Sbjct: 240 VTPDSIAKWTDVSDADARKLFDQRKDKLSTPEKRQVSQIVFPSGEEAQAARTKIAEGASF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             +A ++G   +D+ LG  SK  + D ++A++ F+L    + +  I G+FG  +  VS +
Sbjct: 300 DDIATQRGLKPADVELGMVSKAEMLDPAVANAAFALPLN-EVSQPIQGAFGTALVRVSKV 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P    S++ +   I   + + +A  +V+E + ++E+  A G ++ E ++   + ++ + 
Sbjct: 359 EPGVQPSYESLASTIKRDVSLERARAQVQELHDKMEDARAGGANVIEAAKTLGLNAVTIE 418

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            +D +G+   G+ V  IP   +L    F  D  +  +         Y+W  +    P+R+
Sbjct: 419 AIDRSGRGPDGQPVKDIPQGLELATAAFNSDVGVDTESINY--QNGYVWFDVLGVTPSRE 476

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L+EV   V+  W+T +    + + A ++V +    GK   ++    G  + T   + R
Sbjct: 477 RSLDEVKDQVEARWRTEQVTSRLRTMAAEMVQKLGTAGK-LAEVA-PQGVKVETATGLKR 534

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFIS 592
            +  +       +  VF    +         G  + V++VT+  + PV     E  K   
Sbjct: 535 -EGASAGVPDTVVEAVFRTQKDAFGQSQGGTGNEWFVYRVTDVTIPPVDLASAETKKLKD 593

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
            L Q MN + +   IA+++ Q    ++   + +    
Sbjct: 594 ALVQRMNDEQVGEYIAWVEKQIGTKINQQAVAQATGA 630


>gi|27379919|ref|NP_771448.1| peptidyl-prolyl cis-trans isomerse [Bradyrhizobium japonicum USDA
           110]
 gi|27353072|dbj|BAC50073.1| blr4808 [Bradyrhizobium japonicum USDA 110]
          Length = 632

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 168/639 (26%), Positives = 306/639 (47%), Gaps = 15/639 (2%)

Query: 1   MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  +RKAS  W+ K    + + VL + F IWG++D +F   G STV  +GR ++  + F
Sbjct: 1   MLRGMRKASSNWLGKTIMAVVMGVLIISFGIWGIAD-IFRGFGQSTVAKIGRTEISLNEF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              +   L  IS++ G  +  ++AR+ GLD+++L   ++ A LD+    +GL     ++ 
Sbjct: 60  RQIYTDRLQQISRQFGRPLTPDQARAFGLDRQVLQQTIAEAALDEEARRLGLGQSDDQIR 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G    F  + F + +   G  E+ Y+    K+  R  + G    G+ P  
Sbjct: 120 QVIMNDPNFKGVGGSFDANRFQAVIRNFGYTEQRYVSEQRKVSLRRQLTGTIGAGLEPPK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            ++D   RF  E R++++  L+      I  PS   L  +FE +K  +RAPEY++I++++
Sbjct: 180 AMIDVLTRFQNEQRAIEFARLDAAQAGTIDAPSPEALAAYFEDHKVQFRAPEYRKIAFVV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
               E  K  E+S+++ +  +++ K++  +PE R + Q+VFPN  EA  A + L  G  F
Sbjct: 240 ISPEEIGKWSEVSDEDAKKLFDQRKDRLGTPEKRQIHQIVFPNAAEAQTARERLAGGMSF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             L +E+G S SD+ LG  +K  + D ++ D+ F+L   G+ +  I G  G  I  V  I
Sbjct: 300 EDLGKERGLSASDVDLGLVTKSSL-DPAVGDAAFALP-AGEISQPIQGRLGTAIVKVDKI 357

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P    ++  +  DI  ++   +A  KV +   ++E+    G S+ + +++  + ++ + 
Sbjct: 358 EPGVEANYASLVGDIKREIATERARVKVADLRDKMEDERGGGASVIDAAQKLGLTAVTID 417

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            VD +G+   G+ VA IP    ++ + F  D  +  D       G Y+W  +    P+RD
Sbjct: 418 AVDRSGRAPNGQPVANIPPGLDVVSQAFNTDVGVDNDAISF--KGGYVWYDVLAITPSRD 475

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L+EV   V+  W+  + A ++ +KA ++V +    GK   D    +GA + T     R
Sbjct: 476 RNLDEVRDQVEARWRQDQIATKLKAKATEMVQKLEAGGK-LADEAAAVGAKVETATGFKR 534

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK----DKFIS 592
            D+         ++  F    + V   P+  G   +VF+VT+     V        K   
Sbjct: 535 DDSPAGV-PATVVAAAFRTAKDGVGQTPVSGGSEVIVFRVTDIVDPTVDAASDAVKKLKE 593

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
            L +   ++ + S +  L++    T++     +     +
Sbjct: 594 SLDRAQTEEQVASYVNKLETDIGTTINQAAFAQVTGANQ 632


>gi|148255838|ref|YP_001240423.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1]
 gi|146408011|gb|ABQ36517.1| Putative Peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1]
          Length = 636

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 173/638 (27%), Positives = 308/638 (48%), Gaps = 15/638 (2%)

Query: 1   MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  +RKAS  W+ K    + + VL V F IWG++D +F   G ST  +VGR ++  + F
Sbjct: 1   MLRGLRKASSNWLGKTIMAVVMGVLIVSFGIWGIAD-IFRGFGQSTAATVGRTEISINEF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              +   L  I +++G  +  E+AR  GLD+ +L   ++ A LD+    +GL        
Sbjct: 60  RQIYTDRLQQIGRQLGRPLTQEQARMFGLDRTVLQQTIAEAALDEDARRLGLGQSDAETM 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G +  F    F + +   G  E+ Y+    ++  R  + G    G+ P N
Sbjct: 120 RVILSDPNFKGPNGAFDPQRFQAIIRNFGFTEQRYLADQRRVSLRRQITGTIAAGLEPPN 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +LD   RF  E RS+DY+ L+      I  PS  VL  +F+++K  ++APEY++IS++L
Sbjct: 180 TMLDALSRFQNEQRSIDYLKLDAAQAGPIDAPSPEVLASYFDEHKAQFKAPEYRKISFVL 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
               +  K  ++S+++ +  +++ K +  +PE R V+Q+ FP  +EA  A   +  G+  
Sbjct: 240 VTPEDIGKWTDVSDEDARKLFDQRKAQMGTPEKRQVQQMTFPTMEEAQAARARIASGEVS 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F +LA+E+  + +D+ LG  +K  I D ++AD  FSL   G+ +  + G+F   +  VS 
Sbjct: 300 FDELAKERNLNPADLDLGLVTKTAILDPAVADMAFSLP-TGEVSQPVKGAFNVALVKVSA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+P    +++ V  DI  ++   +A  +V     ++E+    G S+ E +++  + +I +
Sbjct: 359 IQPGQQPAYESVATDIKKEIAADRAKSQVANLRDKMEDERGGGASVAEAAKKLGLNAITV 418

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
             VD +GK   G+ V  IP    ++ + F  D  +  D+      G Y+W ++    P R
Sbjct: 419 EAVDRSGKQPDGQPVPNIPLGLDVVAQAFNSD--VGVDNEPISFRGGYVWYEVLGITPPR 476

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
           DR L+EV   V   W+  + A ++ +KA  LV + ++ GK   D    LG  + T +   
Sbjct: 477 DRSLDEVKDQVAAKWRDDEVAAKLRAKATDLVKKLNEGGK-LADEAAMLGVKVETASAFK 535

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFI 591
           R D          I   F    + V     E G  ++VF+VT+          ++  K  
Sbjct: 536 R-DATVPGVPAGAIVAAFRTAKDGVGQTEAEGGRQWIVFRVTDITEPKVDLASEDIKKLK 594

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
             L + +  +   + +  L+     T+++  + + + G
Sbjct: 595 DQLQRALADEQGTAYVMKLEKDIGTTINEAAVAQVVGG 632


>gi|146341037|ref|YP_001206085.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
 gi|146193843|emb|CAL77860.1| Putative Peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
          Length = 636

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 173/638 (27%), Positives = 309/638 (48%), Gaps = 15/638 (2%)

Query: 1   MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  +RKAS  W+ K    + + VL V F IWG++D +F   G ST  +VGR ++  + F
Sbjct: 1   MLRGLRKASSNWLGKTIMAVVMGVLIVSFGIWGIAD-IFRGFGQSTAATVGRTEISINEF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              +   L  I ++IG  + +++AR  GLD+ +L   ++ A LD+    IGL        
Sbjct: 60  RQIYTDRLQQIGRQIGRPLTTDQARMFGLDRSVLQQTIAEAALDEQARRIGLGQSDAETM 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G +  F    F + +   G  E+ Y+    +   R  + G    G+ PSN
Sbjct: 120 RVILSDPNFKGPNGAFDPQRFQAIIRNFGFTEQRYLADQRRQSLRRQITGTIAAGLEPSN 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            LLD   RF  E RS+DY+ L+      I  P+  VL  +F+++K  ++APEY++IS++L
Sbjct: 180 TLLDALSRFQNEQRSIDYVKLDAAQAGTIETPAPEVLATYFDEHKAQFKAPEYRKISFVL 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
               E  K   +S+++ +  +++ K    +PE R V+Q+ FP  +EA  A   +  G+  
Sbjct: 240 VTPEEIGKWTTVSDEDARKVFDQRKALMGTPEKRQVQQMTFPTMEEAQAARARIASGEVT 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F +LA+E+  + +D+ LG  +K  I D ++AD+ FSL   G+ +  + G+F   +  VS 
Sbjct: 300 FDELAKERNLNPADLDLGLVTKSAILDPAVADTAFSLP-TGEVSQPVKGAFNVALVKVSA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+P    +++ V  DI  ++   +A  +V     ++E+    G S+ E +++  + ++ +
Sbjct: 359 IQPGQEPAYESVAADIKKEIAAERAKSEVATLRDKMEDERGGGASVAEAAKKLGLNAVTV 418

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
             VD +GK   G+ V  IP    ++ + F  D  +  D+      G Y+W ++    P R
Sbjct: 419 EAVDRSGKQPDGQPVPNIPLGLDVVAQAFASD--VGVDNEPISFRGGYVWFEVLGITPPR 476

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
           +R L+EV   V   W+  + A+ +  +A +LV + ++ GK   D    LG  + T +   
Sbjct: 477 ERTLDEVKDQVAAKWRDDEIAKRLRDRATELVKKLNEGGK-LADEAAALGVKVETASAFK 535

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFI 591
           R D          I+  F    + V     + G  ++VF+VT+          ++  K  
Sbjct: 536 R-DASLPGVPTGAITATFRTAKDGVGQTEADGGRQWIVFRVTDIVDPKVDLASEDVKKLK 594

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
             L + +  +   S +  L+     T+++  + + + G
Sbjct: 595 DQLQRALADEQGTSYVLKLEKDIGTTINEAAVAQVVGG 632


>gi|222086022|ref|YP_002544554.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Agrobacterium radiobacter K84]
 gi|221723470|gb|ACM26626.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Agrobacterium radiobacter K84]
          Length = 630

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 200/631 (31%), Positives = 347/631 (54%), Gaps = 7/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M +++RK ++TWVAK   V+L   F IWG+   + +   S+ VV+VG QK+  + F  ++
Sbjct: 1   MFDVLRKLAKTWVAKGIFVLLIAAFSIWGIESRMVTGGSSNAVVTVGDQKIDTNEFRLAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  ISQ++   +  E+AR+ G+ ++ +  LV+GA+LDQ   D+ L     R+   I 
Sbjct: 61  RRQIQAISQQLRMQITPEQARAFGIAQQTVAQLVAGASLDQLASDMNLGLSQDRLAQLIG 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   +  F    F S L    IN  +YI   +K+  R+ +V     G      L+D
Sbjct: 121 DDPAFKALNGTFDRQKFESLLRNSNINPDDYIKERSKVAVRSQIVEAVSNGFVAPKTLVD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K+++ E+RS+DY++L N ++  I  P++ VL++WF+  K  +RAPEY++ SY+     
Sbjct: 181 AVKQYHDESRSIDYLLLTNANIDPIKAPADDVLSKWFDGVKSKFRAPEYRKFSYVKLQAE 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D  +AE+EK K  + +P  RT+EQL F N+  A+ A  +LK G  F QL 
Sbjct: 241 DIADPASVTDDAARAEFEKRKNSFTTPATRTIEQLTFANKDLANAASDALKTGTTFDQLV 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK  +D+ LG+F+KE +PD +LA + F++AK+G  TPV+ GSFG VI  V+N+K   
Sbjct: 301 TDQGKKPADVLLGTFTKEQVPDQTLAQAAFAVAKEGGTTPVVDGSFGPVILRVTNVKDET 360

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             +F +VK+DI  Q+ +  A+  +   + + E+    G S+ E +++  + +I +  +D 
Sbjct: 361 AKNFDDVKEDIRKQIALNAAASDITSIHDKFEDLRGSGVSLQEAAQQLNLKAITVDAIDS 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  G E+  +P ++QLL  VF  D   +    + + +  Y+W  +    P RDR L 
Sbjct: 421 TGLDQAGNEIKDLPARQQLLGEVFKADQGSNA-APLTVGNDGYVWYDVLGLTPDRDRPLA 479

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV      DW   +    +++KAN+L  E  K GK+  DI   LG ++ +   + R   +
Sbjct: 480 EVREKAVVDWTAEQQKIALAAKANELKQEAQK-GKSLADIATPLGIAVESKADVTRT-TD 537

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQ 596
           +   G  G++  FSGP++        +  + ++ KVT+    P  +    +D+  + +  
Sbjct: 538 DPVLGRAGVAAAFSGPIDTAANAIGADDTTQILLKVTDVNNNPTTDALSNQDQQATQIAN 597

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               D+LD ++A L+S+Y+VTV+ NL ++ +
Sbjct: 598 AAGDDILDQIVADLQSKYTVTVNQNLAEQAM 628


>gi|115524599|ref|YP_781510.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
 gi|115518546|gb|ABJ06530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
          Length = 633

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 170/637 (26%), Positives = 298/637 (46%), Gaps = 15/637 (2%)

Query: 1   MLEIIRKASRTWVAKIFL----VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IRKAS  W+ KI L     VL + F +WG+ D +F   G ST  ++G  ++    F
Sbjct: 1   MLRGIRKASSNWIGKIILSTVMGVLILSFAVWGIGD-IFKGFGRSTAATIGSTEISTEQF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              + + L  I ++ G  +  ++AR+ G+D+++L   V+ A LD+     GL        
Sbjct: 60  RQLYTERLQQIGRQFGKPLTPDQARAFGIDRQVLQQAVAEAALDEDARRKGLGQSDAETM 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G   KF    F   L + G  E+ YI    ++  R  + G    G+ P  
Sbjct: 120 RTILSDPNFKGTAGKFDPARFGQVLRQFGYTEQRYIAEQRRVSLRRQIAGTLTAGLIPPK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L+D   R+  E R++DY+ L+  H   I  PS   L  +F  +K+ +RAPEY++ S++ 
Sbjct: 180 TLIDALGRYQNEQRTIDYVKLDAAHAGPIEPPSPEALAAYFADHKNQFRAPEYRKASFVA 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K   +S+++ +  YE  +EK+ +PE R V Q+VFP   +A  A   +  G  F
Sbjct: 240 LTPDAVAKWTTVSDEDAKKAYEDRREKFATPERRQVSQIVFPTSADAQAARSKIDGGASF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             +A+E+G S +DI LG  +K  I D ++A + F+L      +  ++G FG  +A V  I
Sbjct: 300 EDIAKERGLSATDIDLGLVAKAGILDPAVAAAAFALPAN-QVSQPVNGRFGVALAKVGAI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P    SF+ V  D+   + I +A   + + + ++E+    G S+ E +++  + ++ + 
Sbjct: 359 EPGSQQSFESVAADLKRDIAIERARASISDLHNKMEDDRGGGASVVEAAQKLGLAAVTIE 418

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            VD +G+   G   A IP   +L+  +F  D  +  D       G Y+W  +    P+R+
Sbjct: 419 AVDRSGRTSDGTA-APIPQGLELVPALFSSDVGVDNDALAF--GGGYVWFDVLGITPSRE 475

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L+EV   V+  W+  +    + S+A ++V +    G +  D     G  + T     R
Sbjct: 476 RSLDEVKPQVEARWRDEQIGNRLRSQATEMV-QQVNAGTSLADAAAKAGLKVETAASFKR 534

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFIS 592
            D          +   F    + V   P   G  ++V++VT+  V P+     E  +   
Sbjct: 535 -DATVAGLPPAAVEAAFRTAKDGVGQAPGAAGGEWIVYRVTDVAVPPIDPNAPEFKQLRD 593

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
            L + +N + L   +A L++    T++++ + +    
Sbjct: 594 NLERRLNDEQLAQYVAKLETDLGTTINESAVAQATGA 630



 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 49/150 (32%), Gaps = 5/150 (3%)

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-- 322
                   EQ+    + +A E  Q +  G      A + G  +   +  SF ++      
Sbjct: 484 QVEARWRDEQIGNRLRSQATEMVQQVNAGTSLADAAAKAGLKVETAA--SFKRDATVAGL 541

Query: 323 -VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
             +  ++ F  AK G           +++  V+++            K + + +      
Sbjct: 542 PPAAVEAAFRTAKDGVGQAPGAAGGEWIVYRVTDVAVPPIDPNAPEFKQLRDNLERRLND 601

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIV 411
           E++ +   +LE  L    +   +++     
Sbjct: 602 EQLAQYVAKLETDLGTTINESAVAQATGAA 631


>gi|75676027|ref|YP_318448.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           winogradskyi Nb-255]
 gi|74420897|gb|ABA05096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           winogradskyi Nb-255]
          Length = 636

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 161/637 (25%), Positives = 308/637 (48%), Gaps = 13/637 (2%)

Query: 1   MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IR AS  W+ K    I + +L V F IWG++D +F   G S + +VG  ++    F
Sbjct: 1   MLRGIRNASSNWLGKTLMTIVMGLLIVAFGIWGIAD-IFHGFGQSALATVGGTEISTEQF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              +   L  I ++ G  +  ++ R++GLD++IL  +++ A LD+  +  GL+     + 
Sbjct: 60  RQIYNDRLQQIGRQFGRPLPPDQVRALGLDRQILQQVIAEAALDEDAQRKGLKVSDEEIG 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            +I   P F G +N F    F   + + G  E+ Y+     M  R  +VG    G+ PS 
Sbjct: 120 RQIKSDPNFKGANNAFDAARFAGLIRQLGYTEQRYVAEQRNMALRRQIVGTMTAGVEPSK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            LL+   RF  E R++DY+ L       I  P+   L+ +F+ +K  +RAPEY+++++++
Sbjct: 180 TLLEALNRFQNEQRTIDYVKLGAAQAGTIDPPTADQLSGYFDAHKVQFRAPEYRKVAFVV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
               E  K   +S+D+ +  YE+ K+K  +PE R + Q++FP+  +A  A + +  G  F
Sbjct: 240 LTPEEVAKWTAVSDDDARKIYEERKDKLSTPERRQLRQIMFPSVTDAQAAREKIAGGASF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             +A E+G + SDI LG+ SK  I D ++A++ FS+    + +    G FG  +  V  I
Sbjct: 300 DDIARERGLATSDIDLGTISKAEIIDPAIANAAFSI-NSDEVSQPTQGRFGVALIKVGRI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P    +++ V + +   + + +A  ++   + ++E+    G S+ E +++  + ++ + 
Sbjct: 359 EPGNQPTYESVAEKLKRDVALDRARAEINNLHNKMEDERGGGASVVEAAKKVGLSAVTIE 418

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
             D +G+   GK V+ IP    L+ + F  D  +  D T+ L +  ++W  +    P+RD
Sbjct: 419 ATDRSGRAPDGKPVSGIPQGVDLIAQAFASDVGVDND-TLQLGNNGFIWFDVIGVTPSRD 477

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L+EV   V+  W+  + +  + +KA   + +  + GK   D   +LG  + + + I R
Sbjct: 478 RTLDEVKDKVEARWREDQISSRLMTKATDTIRKLEQGGK-LADEAASLGLKVESASAIKR 536

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFIS 592
            D          ++ V     +     P      + +F+VT+ KV        E  K   
Sbjct: 537 -DATTTALPAAVVAAVCRAAKDAAGQAPGAGNDEWFIFRVTDVKVPTLDLASDETKKLRE 595

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
            + + ++ + +   I  L+++    ++   + +    
Sbjct: 596 GVQRGLSDEYIGQYIVKLEAEIGTKINQAAVAQITGA 632


>gi|220925415|ref|YP_002500717.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           nodulans ORS 2060]
 gi|219950022|gb|ACL60414.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           nodulans ORS 2060]
          Length = 632

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 165/637 (25%), Positives = 322/637 (50%), Gaps = 13/637 (2%)

Query: 1   MLEIIRKASRTWVAKIF----LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+  R AS++W+ KI       +L     I+G+ D +F  SGSSTV +VG  K+   + 
Sbjct: 1   MLQGFRAASQSWLGKIVITVVFGLLIAGLAIFGIGD-IFRGSGSSTVATVGSTKISAEAV 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            ++++ ++  +++++   +  ++AR++GLD+++L  LV+ ATLDQ   D+GL      V 
Sbjct: 60  RSAYQNQIQRLARQVRRPITPDQARALGLDREVLSALVTEATLDQKTRDLGLRVSDDTVI 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G +  F   +F   L + G++E  ++     + +R  +       +    
Sbjct: 120 RLIKEEPAFKGANGAFDIALFNDTLRQAGLSEAAFVQEQRAVAARLQLAEAITADLPVPL 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            + +   R+  E R+  +I+L       I  P++  +  ++++++  +RAPEY+ ++ ++
Sbjct: 180 AVREAIHRYTAERRAAAFILLPESAAGEIPAPTDEEVKTYYDEHRSAFRAPEYRSVNLLV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295
            D     K   +++ E +A Y+ +K +Y +PE RT++Q+VFPN+ +A  A   ++ G+  
Sbjct: 240 LDPATLAKPDAVTDAEARARYDADKSRYGTPERRTIQQIVFPNEADAAAALARIRSGEAP 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  +A E+G     + LG+FS+  + D ++AD+ F L ++G  +  + G FG V+  V+ 
Sbjct: 300 FESIAGERGLDPKSLDLGTFSRSELFDPAVADAAFGL-QQGVVSEPVKGRFGTVLLRVTA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+P     ++EV   I  ++   +A + +++ +  +E+  A    + EI+R  ++  I +
Sbjct: 359 IEPGSVKPYEEVAGQIRTEIARERAGDNLEKVHDAIEDQRAGAKPLAEIARERELPLITV 418

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
             VD  G+D +GK V  +P K+ +L  +F  +   +    +    G Y+W  I +  PA 
Sbjct: 419 ASVDAQGRDPQGKPVEGLPDKDAVLPALFRAEMG-ADSEALRTRSGGYVWYDIVKVDPAH 477

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
           DR L EV  DV   WK  +    +S+KA +      K G+    +  +LG    T + + 
Sbjct: 478 DRPLPEVRDDVVAQWKAEEVERRLSAKAREAAERLDK-GEAIEAVASSLGLEAKTASDLA 536

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--FISY 593
           R   ++     + I ++F+ PV+        + +  V FKVT++ V P+    +      
Sbjct: 537 RGRAKDGLTP-ESIGRIFATPVDKTGSASAGDKV-RVAFKVTSATVPPLAAGSQGNVEQQ 594

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
               +  D+L   IA  + +  V+++++  +R + GE
Sbjct: 595 FRSALADDILAQYIADARKEAGVSINESAFRRAIGGE 631


>gi|260459244|ref|ZP_05807499.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium opportunistum
           WSM2075]
 gi|259034798|gb|EEW36054.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium opportunistum
           WSM2075]
          Length = 630

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 181/631 (28%), Positives = 314/631 (49%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59
           ML  +R A+ TWVAK  L +L V F  WG+S  L    +G  +V++ G  KV  + +  +
Sbjct: 1   MLGTLRSAAGTWVAKTLLSLLVVSFAAWGISGRLMGGFAGHDSVITAGGTKVSINEYRLA 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           + ++L ++SQ+ G  +  E+A+ +G+D +IL  LVSGA LD+    +GL     R+    
Sbjct: 61  YDRQLAVMSQQFGQRLTHEQAKGLGIDNQILAQLVSGAVLDEQARKLGLGLSKDRLAELT 120

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F G   +F    F   L   G+  ++Y+ +  ++  R  +V     G++  +   
Sbjct: 121 REDPAFKGPSGQFDRRTFEYMLHEVGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDTFF 180

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                +  E+R+VDY+ L    V  +  PS++VL  +FE  K  Y APEY++ SY+  + 
Sbjct: 181 KAVALYRGEDRTVDYLTLPKALVEPVEAPSDSVLQAYFEANKKTYAAPEYRKFSYVRLEP 240

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +      +++ ++  +Y KNK +Y +PE+RT+EQLVF     A  A  SLK G  F +L
Sbjct: 241 VDIMDTTAVTDQQVSDDYNKNKARYTTPEMRTIEQLVFKTPDAAKAALDSLKAGATFDKL 300

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
              +GK+ +D  LG+ +K+ I D ++AD+ F+L    + +PV+ G+FG V+  V+ IKP 
Sbjct: 301 VAAEGKTPADTLLGTLAKDKIADKAVADAAFAL-NANEVSPVVQGAFGPVLLRVTEIKPE 359

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
                 EV   I   + + +AS  + + +   E+  A G+S+ + + + K+  I +  +D
Sbjct: 360 VVKPLAEVSDQIRKDLALGEASRILLDVHDNYEDTRASGSSLADAAAKLKLKDITIDAID 419

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
            +G    G  V  +P   +L+  VF  + P +++  +   D  +++ ++    PARDR L
Sbjct: 420 RSGLRPDGSIVKDLPESPELIKAVFDAE-PNTENDGLTTADNGFIFYEVGSVTPARDRTL 478

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           +EV   V  DW   +T + +++KA++L  +  K G     I   L     T   + R + 
Sbjct: 479 DEVRKKVVADWTAAETTKRLAAKADEL-EKRLKAGATLDVIAGELKLEKQTKRGLRR-EA 536

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF----ISYLT 595
           ++  FG +G + +F          P   G   ++FKV         +            T
Sbjct: 537 DDADFGKEGAAVMFGVGEGGTGLIPSPTGDGQILFKVAEVFEPAGADASSVPEDAQKSFT 596

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
             M+ DLLD ++A L++QY V V    + + 
Sbjct: 597 SGMSDDLLDQLVAQLQTQYDVRVDQAAVAQA 627


>gi|307310586|ref|ZP_07590233.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium
           meliloti BL225C]
 gi|307320968|ref|ZP_07600375.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium
           meliloti AK83]
 gi|306893342|gb|EFN24121.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium
           meliloti AK83]
 gi|306899696|gb|EFN30322.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium
           meliloti BL225C]
          Length = 630

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 199/631 (31%), Positives = 343/631 (54%), Gaps = 8/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A++T V K  L +L + F++WG    L   +  + VV+VG  KV  S F  ++
Sbjct: 1   MLDSLRNAAQTRVVKGLLALLILSFMVWG-GQTLMVPNTPNAVVTVGDVKVSASDFRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++ ++S+++G  ++ ++A++ G++ ++   LV+GA LDQ   D+ L     R+   I 
Sbjct: 60  ERQVALLSRQLGTPLSRQQAQAFGVENQVYAQLVAGAALDQLATDMNLGLSEDRLARLIG 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FHG + +F    F S L   G+ E++YI++ +++  R+ +V     G     +L+D
Sbjct: 120 EDPAFHGANGQFDRLTFSSVLRNAGLTEQDYINNRSQVAVRSQIVDALTDGYTAPKVLVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              ++  E R++DY++L+N ++ A+  P + VL  WFE  K NYRAPEY++ISYI  +  
Sbjct: 180 AIGKYRHETRTIDYLLLSNANIDAVKTPGDDVLAPWFESRKANYRAPEYRKISYIKLEPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++++EL+A+YEK KE Y +P  RTVEQL FP+++ AD A   L  G  F  L 
Sbjct: 240 DLAAPDAVTSEELRADYEKRKESYRTPATRTVEQLTFPSREAADAAAAKLAAGTSFDDLV 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           + +GK+ +D+ LG F+KE +PD  +AD+ F++A+ G  TPV+ G+FG VI  V+NI+P  
Sbjct: 300 KAEGKTSADVLLGDFTKERMPDAKIADAAFAVAQDGGTTPVVEGAFGPVILRVTNIRPDA 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             SF EVK+++  ++ +  A E++   + ++E+  A G S+ EI+ + K+  + +  VD 
Sbjct: 360 VRSFDEVKEELRKEIALDAAREQLVGLHDKIEDERAGGVSVKEIAEQLKLKLVTVDAVDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           +GKD  G EV  +P    LL  VF  D        V +      W  ++E IPARDR L+
Sbjct: 420 SGKDQNGDEVKDLPEPRALLQEVFKADVGTDT-LAVNIGRDGSAWFDVEEIIPARDRTLD 478

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV  +V  DW   +      +   + + E  ++G    DI   LG  + +   + R  N 
Sbjct: 479 EVRDEVAADWTAEQ-QRAALAAKAKELKERIEKGAKLADIASELGLVVESKTGLTRATN- 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
           +       +   F+GP   V   P   G   V+ +VT  +       +      I  + +
Sbjct: 537 DATLSPAAVIAAFAGPNGHVANAPGIGGDGQVLMQVTAVEEKAPADALDNDSSQIEAIAR 596

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               D+LD +++ L++ Y V+++ +L +  L
Sbjct: 597 ASGDDILDQMVSTLQTAYGVSINQSLAETAL 627


>gi|15965412|ref|NP_385765.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium
           meliloti 1021]
 gi|15074593|emb|CAC46238.1| Putative peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           meliloti 1021]
          Length = 630

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 199/631 (31%), Positives = 343/631 (54%), Gaps = 8/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A++T V K  L +L + F++WG    L   +  + VV+VG  KV  S F  ++
Sbjct: 1   MLDSLRNAAQTRVVKGLLALLILSFMVWG-GQTLMVPNTPNAVVTVGDVKVSASDFRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++ ++S+++G  ++ ++A++ G++ ++   LV+GA LDQ   D+ L     R+   I 
Sbjct: 60  ERQVALLSRQLGTPLSRQQAQAFGVENQVYAQLVAGAALDQLATDMNLGLSEDRLARLIG 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FHG + +F    F S L   G+ E++YI++ +++  R+ +V     G     +L+D
Sbjct: 120 EDPAFHGANGQFDRLTFSSVLRNAGLTEQDYINNRSQVAVRSQIVDALTDGYTAPKVLVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              ++  E R++DY++L+N ++ A+  P + VL  WFE  K NYRAPEY++ISYI  +  
Sbjct: 180 AIGKYRHETRTIDYLLLSNANIDAVKTPGDDVLAPWFESRKANYRAPEYRKISYIKLEPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++++EL+A+YEK KE Y +P  RTVEQL FP+++ AD A   L  G  F  L 
Sbjct: 240 DLAAPDAVTSEELRADYEKRKESYRTPATRTVEQLTFPSREAADAAAAKLAAGTSFDDLV 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           + +GK+ +D+ LG F+KE +PD  +AD+ F++A+ G  TPV+ G+FG VI  V+NI+P  
Sbjct: 300 KAEGKTSADVLLGDFTKERMPDAKIADAAFAVAQDGGTTPVVEGAFGPVILRVTNIRPDA 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             SF EVK+++  ++ +  A E++   + ++E+  A G S+ EI+ + K+  + +  VD 
Sbjct: 360 VRSFDEVKEELRKEIALDAAREQLVGLHDKIEDERAGGVSVKEIAEQLKLKLVTVDAVDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           +GKD  G EV  +P    LL  VF  D        V +      W  ++E IPARDR L+
Sbjct: 420 SGKDQNGDEVKDLPEPRALLQEVFKADVGTDT-LAVNIGRDGSAWFDVEEIIPARDRTLD 478

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV  +V  DW   +      +   + + E  ++G    DI   LG  + +   + R  N 
Sbjct: 479 EVRDEVAADWTAEQ-QRAALAAKAKELKERIEKGAKLADIASELGLVVESKTGLTRATN- 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
           +       +   F+GP   V   P   G   V+ +VT  +       +      I  + +
Sbjct: 537 DATLSPAAVIAAFAGPNGHVANAPGIGGDGQVLMQVTAVEDQAPADALDNDSSQIEAIAR 596

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               D+LD +++ L++ Y V+++ +L +  L
Sbjct: 597 ASGDDILDQMVSTLQTAYGVSINQSLAETAL 627


>gi|222148891|ref|YP_002549848.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4]
 gi|221735877|gb|ACM36840.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4]
          Length = 629

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 204/631 (32%), Positives = 342/631 (54%), Gaps = 8/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML I+RKA+ TWVAK  L++L   F IWG+S ++ S   S  V+ VG Q V  + F  ++
Sbjct: 1   MLVILRKAAGTWVAKGLLLLLVASFAIWGISSSIMS-DTSDKVIKVGSQSVNSNEFRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +S++ G  + SE+ARS+G++ ++   LV+GA LDQ   D+ L     R+   I 
Sbjct: 60  QRQISDLSRRFGTQLTSEQARSLGIESQVYQQLVAGAALDQLASDMNLGLSQDRLAQLIG 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F   +F SRL   GI E++YI   +K+  R+ +V     G  P  +L+D
Sbjct: 120 DDPAFKNTNGQFDRQLFTSRLRNSGIREQDYITERSKVAVRSQIVDATAEGFVPPKVLID 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+RS+DY++L   ++  I  P   VL  WF   K  YRAPEY+  SY+  +  
Sbjct: 180 ALKLYRQESRSIDYLLLTTANIDPIKAPDETVLKTWFNTMKSRYRAPEYRSFSYVKLEPA 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++++++ EY+ N +K+     RT+EQL FP ++ A+ A QSLK GK F QL 
Sbjct: 240 DIADPKAVTDEQVKQEYDANLKKFEVAGTRTLEQLTFPTKELAETAAQSLKNGKTFDQLV 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ +D+ LG F++  IPD  LAD+ F++AK  D TPV+ G+FG VI  VSNIKPS 
Sbjct: 300 ADQGKTATDVLLGDFTRADIPDQKLADAAFAVAKDSDTTPVVEGAFGPVILRVSNIKPSH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T +  EVK  I   +    A++++ + + R E+  A G+S++E + +  + +I +  +D 
Sbjct: 360 TKTLDEVKDQIRADLAANAAAQQINDVHDRFEDMRASGSSLEEAATKAGLKAIKIDGIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G+D  GK+   +P K  LL  VF  +   ++   + +    Y+W  +     +R+R L+
Sbjct: 420 QGQDKTGKQAENLPEKANLLKSVFETEAG-AEPLPLNIGRNGYLWFDVTSIDASRERTLD 478

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV      DW T +  + + +K  QL  +    G    D+   L   + T   + R D E
Sbjct: 479 EVKDKAVSDWTTEQQKQALGAKVEQLKAKAD-TGVALADLATELAIGVETKAGLRR-DTE 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
           +   G   +   F GP   +      + ++ ++ KVT+    P    V +++  I+ L +
Sbjct: 537 DPVLGPAAVQAAFRGPSGTIGSAVGADPMTQILLKVTDVNTQPTGDVVDQQESQITALAK 596

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               D+LD ++  L+++Y VT++  L Q+ +
Sbjct: 597 SAGDDILDQMVNQLQTKYGVTINQALAQQAI 627


>gi|150396621|ref|YP_001327088.1| putative peptidyl-prolyl cis-trans isomerase [Sinorhizobium medicae
           WSM419]
 gi|150028136|gb|ABR60253.1| putative peptidyl-prolyl CIS-trans isomerase protein [Sinorhizobium
           medicae WSM419]
          Length = 630

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 192/631 (30%), Positives = 337/631 (53%), Gaps = 8/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A++T V K  L +L + F++WG    L   +  + VV+VG  KV  S F  ++
Sbjct: 1   MLDSLRNAAQTRVVKALLALLILSFMVWG-GQTLMVPNTPNAVVTVGDIKVSPSDFRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++ ++S+++G  +  ++A++ G++ ++   LV+GA LDQ   D+ L     R+   I 
Sbjct: 60  ERQVALLSRQLGTPLTRQQAQAFGVENQVYAQLVAGAALDQLATDMNLGLSEDRLARLIG 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FHG + +F    F S L   G+ E++YI++ +++  R+ +V     G     +L++
Sbjct: 120 EDPAFHGVNGQFDRLTFSSVLRNAGLTEQDYINNRSQVAVRSQIVDALTDGYTAPKVLVE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              ++  E R+VDY++L+N ++ A+  P + VL  WFE  K NYRAPEY++ SYI  +  
Sbjct: 180 AVDKYRHETRTVDYLLLSNANIDAVKTPGDDVLAPWFESRKANYRAPEYRKFSYIKLEPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ +EL+A+Y+K KE + +P  RTVEQL FP+++ AD A   L  G  F  L 
Sbjct: 240 DLAASDSVTEEELRADYDKRKESFRTPATRTVEQLAFPSREAADAAAAKLSAGTSFDDLV 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           + +GK+ +D+ LG F+KE +PD  +AD+ F++A+ G  TPV+ G FG VI  V+NI+   
Sbjct: 300 KAEGKTSADVLLGDFTKERMPDAKIADAAFAVAQDGGTTPVVDGPFGPVILRVTNIRSEA 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             S+ EVK+++  ++ +  A +++   + ++E+  A G ++ EI+ + K+  + +  VD 
Sbjct: 360 VRSYDEVKEELRKEIALDAARDQLVGLHDKIEDERAGGVTVKEIAEQLKLKLVTVVAVDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           +GKD  G +V  +P    LL  VF  D            DGS +W  ++E IP RDR L+
Sbjct: 420 SGKDQNGDDVKDLPEPRALLQEVFKADVGTDTLSVNIGRDGS-VWFDVEEIIPGRDRTLD 478

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV  +V  DW   +      +   + + E  ++G    DI   LG  + T   + R  N 
Sbjct: 479 EVRDEVAADWTAEQ-QRAALAAKAKELKERVEKGAKLADIASELGLVVETKTGLTRSTN- 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
           +       +   F G    V   P   G   V+ +VT  +       +    + I  + +
Sbjct: 537 DATLSPAAVIAAFGGANGHVANAPGIGGDGQVLMQVTAVEEKAPADALDNDSRQIEAIAR 596

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               D+LD +++ L++ Y V+++  L +  L
Sbjct: 597 ASGDDILDQMVSTLQTAYGVSINQTLAETAL 627


>gi|91977297|ref|YP_569956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB5]
 gi|91683753|gb|ABE40055.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB5]
          Length = 633

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 163/637 (25%), Positives = 296/637 (46%), Gaps = 15/637 (2%)

Query: 1   MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IR AS  W  K    I + VL + F +WG++D +F   G ST+  +G  ++    F
Sbjct: 1   MLRGIRNASSNWFGKTVMIIVMGVLIISFAVWGIAD-IFRGFGRSTLAQIGGTEISTEQF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             ++   L  I ++ G  +  ++AR+ G+D+++L  +++ A LD+    + L        
Sbjct: 60  RQTYNDRLQQIGRQFGRPLTPDQARAFGIDRQVLQQVIAEAALDEDARRLQLGQSDDETM 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G +  F    F   + + G  E+ YI    K+  R  + G    G+ PSN
Sbjct: 120 RSILNDPSFKGTNGAFDPGRFQQVIRQFGFTEQRYIAEQRKVALRRQIAGTITAGLAPSN 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +L  A +F  E R++DY+ L +  V  I  PS   L  ++E +K  +RAPEY++++++ 
Sbjct: 180 TMLLVASQFQNEQRAIDYLKLTDAQVGTIEPPSAEALAAFYEDHKAQFRAPEYRKVAFVA 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K  ++S+ + +  +++ K+K  +PE R V Q+VFPN +EA  A   + +G  F
Sbjct: 240 LTPESIAKWTDVSDADARKLFDERKDKLSTPEKRQVLQIVFPNAEEAQAARARITEGASF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             +  ++G   +D+ LG   K  + D ++A   F+L    + +  I G+FG  +  V+ I
Sbjct: 300 EDITNQRGLKPADVELGLVGKAEMLDPAVAKVAFALPLN-EVSQPIPGAFGTALVKVAKI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P    S++ V   I   + + +A  +V   + ++E+  A G ++ E S+   + ++ + 
Sbjct: 359 EPGVQPSYESVAPTIKRDVALERARAQVMAQHDKMEDARAGGANVIEASKMLGLNAVTIE 418

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            VD +G+   G+ V  IP   +L    F  D  +  +         Y+W  +    P+R+
Sbjct: 419 AVDRSGRGPDGQPVKEIPQGLELATSAFNSDVGVDTEQINY--QNGYVWFDVLGVTPSRE 476

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L EV   V+  W+T +    + + A +LV +    GK   ++    G  + T + + R
Sbjct: 477 RSLAEVKDQVEARWRTEQVTSRLRTMAAELVQKLGANGK-LAEVA-PQGVKVETASGLKR 534

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFIS 592
                       +  VF    + V   P  NG  + V++VT+  V PV     +  K   
Sbjct: 535 EGATPGV-PATVVEAVFRTAKDGVGQSPGGNGNEWFVYRVTDVTVPPVDLASDDAKKLKD 593

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
            L Q MN + +   IA+L+      ++   + +    
Sbjct: 594 ALLQRMNDEQVGEYIAWLERDIGTKINQQAVAQATGA 630


>gi|15888991|ref|NP_354672.1| peptidyl-prolyl cis-trans isomerse D [Agrobacterium tumefaciens
           str. C58]
 gi|15156777|gb|AAK87457.1| peptidyl-prolyl cis-trans isomerse D [Agrobacterium tumefaciens
           str. C58]
          Length = 630

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 193/634 (30%), Positives = 349/634 (55%), Gaps = 10/634 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R ASRT  AK+ L++L V F +WG+S +L +   S  V++VG Q V    F  ++
Sbjct: 1   MLDSLRNASRTMAAKLLLLLLVVSFGVWGVSASLVTA-NSHAVMTVGDQTVSPQEFRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +S++ G  + +E+A++ G+D+++   L +GA LD+    + L     R+   IA
Sbjct: 60  QRQVSDLSRQFGTRLTTEQAKAFGIDRQVFSQLAAGAALDELASKMNLGLSENRLANLIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F  ++F  RL   G  E +YI   +K+  R+ +V     G     +L+D
Sbjct: 120 EDPAFKSVNGQFDRNLFSERLRNSGFREDDYIKERSKVAVRSQIVEAVSDGFAAPQVLVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K++  E R+VDY++L+N  +P +  P + VLT WFE  K  YRAPE+++ +Y+  +  
Sbjct: 180 ALKQYRNEQRAVDYVILSNAVIPPVKAPGDDVLTPWFETNKSKYRAPEFRKFTYVKLEPS 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQL 299
           +  +   +++ ++   Y  +K+ + +   RTVEQL FP+++ A  A + ++ G   + Q+
Sbjct: 240 DIAEPASVTDAQIADYYNSHKDSFRTAGRRTVEQLTFPDKEMAAAAAEQIRLGNTTYDQV 299

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            ++QGK+ SD++LG F+K+ IPD S+AD+ F++ K G  +PV+ GSFG ++  V+ IKP 
Sbjct: 300 VKDQGKTASDVTLGEFTKDTIPDQSIADAAFAIQKDGGVSPVVDGSFGPILLRVTGIKPE 359

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            T +  E K+DI   +    A+E++   + R E+  A G+S+ + +++  +  + +  +D
Sbjct: 360 TTRTLDEAKEDIRKDLATAAAAEEITNVHDRYEDLRAGGSSLADAAKQLNLKPVTIDAID 419

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
            AG + KG  +  +P   QL   VF K +P +    + L    Y+W  +++ IPARDR L
Sbjct: 420 AAGLNEKGDAIEGLP-SPQLAQDVF-KTEPGTDALPINLGREGYIWFDVEQIIPARDRTL 477

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            EV  DV  DW   +    +++KA++L     K G+    +   L  ++   + + R  +
Sbjct: 478 AEVRDDVVADWTAEQQRTALAAKADELKARVEK-GETLEAVAGELSLAVEQKSGLRRT-S 535

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT----NSKVGPVQEKDKFISYLT 595
           E+  FG   I+ VFSG   +V      +G S ++FKVT    N+    +   D+  + + 
Sbjct: 536 EDAIFGRQTIAAVFSGAEGVVGTAADADGSSRILFKVTSVDANAPADALANDDQQFTAIA 595

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
           +    D+LD ++  L++ Y VT++  L  + + G
Sbjct: 596 RAAGDDMLDQMVNRLQNDYGVTINQALADQAMVG 629


>gi|13470813|ref|NP_102382.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium loti
           MAFF303099]
 gi|14021556|dbj|BAB48168.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium loti
           MAFF303099]
          Length = 630

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 179/631 (28%), Positives = 316/631 (50%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59
           ML I+R A+ TWVAK  L +L V F  WG+S  L    +G  +V+  G  KV  + +  +
Sbjct: 1   MLGILRSAAGTWVAKTLLSLLVVSFAAWGISGRLMGGFAGHDSVIIAGGTKVSINEYRLA 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           + ++L ++SQ+ G  +  E+A+++G+D ++L  LVSGA LD+    +GL     R+    
Sbjct: 61  YDRQLAVMSQQFGQRLTHEQAKALGIDNQVLAQLVSGAVLDEQARKLGLGLSKDRLAELT 120

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F G   +F    F   L + G+  ++Y+ +  ++  R  +V     G++  +   
Sbjct: 121 REDPAFKGPGGEFDRRTFEYMLRQVGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDAFF 180

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                +  E+R+VDY++L  + V  I  PS++VL  +FE  K  Y APEY++ SY+  + 
Sbjct: 181 KAVALYRGEDRTVDYLLLPKKLVEPIEAPSDSVLQAYFEANKKTYAAPEYRKFSYVRLEP 240

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +      ++  ++  +Y KNK +Y +PE+RT+EQLVF     A  A  SLK G  F +L
Sbjct: 241 VDIMDPTAVTEQQVSDDYNKNKTRYTTPEMRTIEQLVFKTPDAAKAALDSLKAGATFEKL 300

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
              +GK+ +D  LG+ +K+ I D ++AD+ F+L    + + V+ G+FG V+  V+ IKP 
Sbjct: 301 VTAEGKTPADTLLGTLAKDKIADKAVADAAFAL-NANEVSQVVQGAFGPVLLRVTEIKPE 359

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
                 EV   I   + + +AS  + + +   E+  A G+S+ + + + K+  + +  +D
Sbjct: 360 VVKPLAEVSDQIRKDLALGEASRILLDVHDNYEDTRASGSSLADAAAKLKLKDVTIDAID 419

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
            +G    G  V  +P    L+  VF  + P +++  +   D  +++ ++    PARDR L
Sbjct: 420 RSGLRPDGSIVKDLPESPALIKAVFDAE-PKTENEALTTADNGFIFYEVASITPARDRTL 478

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           +EV   V  DW   +T + +++KA++L  +  K G     I  +L     T   + R + 
Sbjct: 479 DEVRQKVVADWTAAETTKRLAAKASEL-DKRLKAGATLDVIAGDLKLEKQTKRGLKR-EA 536

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF----ISYLT 595
           ++  FG +G + +F          P   G   ++FKV         +            T
Sbjct: 537 DDADFGKEGAAVMFGVGEGGTGLIPSPTGDGQILFKVAEVFEPAGADASSVPEDAQKSFT 596

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
             M+ DLLD ++A L++QY V +    + + 
Sbjct: 597 SGMSDDLLDQLVAQLQTQYDVRIDQAAVAQA 627


>gi|163760078|ref|ZP_02167161.1| peptidyl-prolyl cis-trans isomerse D [Hoeflea phototrophica DFL-43]
 gi|162282477|gb|EDQ32765.1| peptidyl-prolyl cis-trans isomerse D [Hoeflea phototrophica DFL-43]
          Length = 651

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 183/631 (29%), Positives = 349/631 (55%), Gaps = 8/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK +++WVA+  LV+L   F +WG+S ++ +  GS  VV+VG  +V  + F  ++
Sbjct: 23  MLDTLRKGAKSWVAQFLLVLLVASFAVWGISGSILNAGGS-AVVTVGDTEVSPNEFRLAY 81

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +++  + Q++G  +  E+AR+ G++ ++   L++GA LD+   ++ L     R+   IA
Sbjct: 82  DRQMAAVGQQLGTRLTQEQARAFGIENQVYSQLIAGALLDEQAREMNLGLSDSRLAALIA 141

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           +   FH  +++F   +F   L   G++E++YI   +++  RT +V     G    + ++ 
Sbjct: 142 QDAAFHDFNSRFDRSIFRRVLNSVGMSEEDYIRSRSQVAVRTQIVEAVAEGFDAPDAMIS 201

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              ++  E R V+Y++L   ++  +  PS+  L+ +FE  K  Y APEY++ +Y+  +  
Sbjct: 202 ALAQYEAETRDVNYLLLTKANIDPVPAPSDDELSAFFESNKTRYAAPEYRKFTYVKLESE 261

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      IS++  +A+YE  K +Y + E RT++QLVF +++ A+ A   L  GK F  L 
Sbjct: 262 DIADPAAISDEMARADYEARKNRYTTAETRTIDQLVFADREAAEAAEAELASGKSFDTLI 321

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QG++ +D+ LGSF++E +PD SLAD+ F++   G  +PV+ G FG VI  V+ I P  
Sbjct: 322 TDQGRTAADVRLGSFTEETVPDQSLADAAFAITDAGGVSPVVDGQFGPVILRVAEITPES 381

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           + SF+EV+ +I +++ + +A++ + + +   E+  A G ++ E + ++K+  + +   D 
Sbjct: 382 SRSFEEVQTEIRDELALAEAAQVLLDVHDAYEDARAGGMTLMEAATQQKLTPVTIEAADR 441

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           +G+   G  ++ +P  +QLL  VF  +  +     ++L    ++W ++++  PARDR L+
Sbjct: 442 SGQTPDGTVLSELPQSQQLLRDVFETEPGVEAP-PISLGVEGFVWFEVEDVTPARDRTLD 500

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V  DW + +  E + +KA  L  E  + G +   I   L  ++ T   +NR D  
Sbjct: 501 EVREQVVADWSSEQELEALGAKATAL-QERLERGADLSAIAAELSIAVETKFSLNRTDT- 558

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD----KFISYLTQ 596
           +  FG   ++  FSGP  +V      +G + ++ +VT+         D    +    ++Q
Sbjct: 559 DPVFGEAAVAAAFSGPQGLVTVANDTSGDNKILIQVTSVNDASGTTADSVSQEQRDQISQ 618

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+LD V+A L+++Y V+V+  L +R L
Sbjct: 619 QIADDILDQVVAQLQAEYGVSVNRELAERAL 649


>gi|254564031|ref|YP_003071126.1| peptidyl-prolyl cis-trans isomerse D [Methylobacterium extorquens
           DM4]
 gi|254271309|emb|CAX27321.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium
           extorquens DM4]
          Length = 634

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 160/640 (25%), Positives = 301/640 (47%), Gaps = 17/640 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+ IR AS+ W+ K+ L V+F  FLI G++    +  F    S+ V +VG+  +     
Sbjct: 1   MLQSIRSASQHWLGKVVLSVIF-TFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEV 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ +L     ++   +  ++AR++GL++++L  L++ A LDQ   D+GL      V 
Sbjct: 60  RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVL 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   +  F   +F   L R G+NE  ++     +++R  +    V  M    
Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPVPQ 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            + +   R+  E R    + L       I  P++  L  ++E  K ++RAPEY+ ++ ++
Sbjct: 180 AIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNLLV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295
            D     K  E+S+DE +  YE N  ++   E RT++Q+ FP++  A EA   ++ G+  
Sbjct: 240 LDPAALAKPDEVSDDEARKVYEANPGRFGKAERRTIQQISFPDEATAAEARAKIESGETP 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  +A ++G     + LG+ +K  + D ++ ++ F+L ++G  +  + G FG V+  V+ 
Sbjct: 300 FETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRVTA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           I+P     F EVK +I  ++ + +  +    +    +E+  A    + EI++ + +  + 
Sbjct: 359 IEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQDAIEDARASAKPLAEIAKDQGLTLVS 418

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           +P VD  G D  G+ VA IP KE  L   F  D   +    +    G  +W  + +  P+
Sbjct: 419 IPAVDAQGNDPSGQPVAGIPDKETTLPAAFRADVG-NDTEVLRTKAGGAIWYDVVKIDPS 477

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
            ++ L EV  +V K W   +  + + +K+ +L     K G+    + +  G  L T  +I
Sbjct: 478 HEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQEAGVPLKTITEI 536

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
            R   ++     + + ++F+ PV      P   G    VFKVT + +           + 
Sbjct: 537 GRNQAKDD-LSTEIVERIFTTPVGKAASAPA--GEGRAVFKVTAATMPAFVPGTPSDGQL 593

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           ++ L   +  D+L   IA ++    V V+   ++R   GE
Sbjct: 594 VTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633


>gi|316933952|ref|YP_004108934.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris DX-1]
 gi|315601666|gb|ADU44201.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris DX-1]
          Length = 633

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 156/629 (24%), Positives = 293/629 (46%), Gaps = 15/629 (2%)

Query: 1   MLEIIRKASRTWVAKIFL----VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IR AS  W  K  +     +L V F IWG++D +F   G +T+  +G  ++    F
Sbjct: 1   MLRGIRNASSNWFGKTIMIAVMGLLIVSFGIWGIAD-VFRGFGRATLAKIGGTEISTEQF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             ++   L  I +++G  +  ++AR++G+D+++L   ++ A LD+    +GL        
Sbjct: 60  RQTYNDRLQQIGRQLGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTM 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G + +F    F   + + G  E+ Y+    ++  R  + G    G+ P  
Sbjct: 120 KSILEDPNFKGANGQFDAGRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGTITAGLEPPK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            LL    +F  E R++DY+ L +     I  PS A L  +++ +K  +RAPEY++IS+++
Sbjct: 180 TLLQALSQFQNEERAIDYLKLTDAQAGTIEAPSPADLAAFYDSHKAQFRAPEYRKISFLV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K  E+S+ + +  +++ K++  +PE R + Q+VFPN +EA  A   +  G  F
Sbjct: 240 VTPESIGKWTEVSDADARKLFDQRKDRLSTPEKRQILQIVFPNAEEAQAARAKIASGTSF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             LA+E+G   +D+ LG  S+  + D  +A + F+L    + +  + G FG V+  V+ I
Sbjct: 300 ADLAQERGVKSADLDLGLVSQSEMLDPKVAAAAFALPLN-EVSQPVQGQFGTVLLEVTKI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P     +  V  ++  ++   +A ++V+E + ++E+    G+S+ E + +  + ++ + 
Sbjct: 359 EPGKQPDYASVAANLKRELAQERARKQVQELHDKIEDARGGGSSVSEAASQLGLAAVTVE 418

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            +D +G+   G  V  IP   +L    F  +  +  D         Y+W  I    P+R+
Sbjct: 419 AIDRSGRGPDGAPVTTIPQGLELATAAFNSEPGVDNDAISY--QNGYVWYDIVGVTPSRE 476

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L+EV   V+  W+  +  E +   A +LV +    GK   D+    G ++ +   I R
Sbjct: 477 RALDEVKDKVEAGWRAEQITERLRKLAVELVQKLDGGGK-LADVA-PAGVAVQSATGIKR 534

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFIS 592
              +    G   +  VF    +        +G  + VF+VT   V        +  +   
Sbjct: 535 EGADAGLPG-TVVDAVFRTAKDAAGQVQGSSGTEWYVFRVTGDTVTTADVNAPQMQQLKD 593

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
            L Q +  + +   IA+L+      V+  
Sbjct: 594 NLVQRLRDEEVGQYIAWLEKDIGTKVNQE 622


>gi|325293071|ref|YP_004278935.1| peptidyl-prolyl cis-trans isomerase D [Agrobacterium sp. H13-3]
 gi|325060924|gb|ADY64615.1| peptidyl-prolyl cis-trans isomerase D [Agrobacterium sp. H13-3]
          Length = 630

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 197/634 (31%), Positives = 350/634 (55%), Gaps = 10/634 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R ASRT  AK+ L++L V F +WG+S +L   S S  V++VG Q V    F  ++
Sbjct: 1   MLDSLRNASRTMAAKLLLLLLVVSFGVWGVSASLV-TSNSHAVMTVGDQTVSPQEFRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +S++ G  + +E+A++ G+D+++   L +GA+LD+    + L     R+   IA
Sbjct: 60  QRQVSDLSRQFGARLTTEQAKAFGIDRQVFSQLAAGASLDELASKMNLGLSEDRLANLIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F   +F  RL   G+ E +YI   +K+  R+ +V     G +   +L+D
Sbjct: 120 EDPAFKSVNGQFDRTLFTERLRNSGLREDDYIKERSKVAVRSQIVEAVSDGFKAPQVLVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K++  E RSVDY++L+N  +  +  P + VL  WFE  K  YRAPE+++ +Y+  +  
Sbjct: 180 ALKQYRNEQRSVDYVILSNAVIAPVKAPGDDVLAPWFETNKAKYRAPEFRKFTYVKLEPS 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQL 299
           +   +  +++ ++   Y  +K+ + +   RTVEQL FP ++ A+ A + ++ G   + Q+
Sbjct: 240 DIADQASVTDAQIADYYNSHKDSFRTAGRRTVEQLTFPEKEMAEAAAEQIRLGNTTYDQV 299

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            ++QGK+ SD++LG F+K+ IPD S+AD+ F++ K G  +PV+ GSFG VI  ++ IKP 
Sbjct: 300 VKDQGKTASDVTLGEFTKDTIPDQSIADAAFAVQKDGGVSPVVAGSFGPVILRITGIKPE 359

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            T + +E K+DI   +    A+E+V   + R E+  A G+S+ + +++  +  + +  +D
Sbjct: 360 TTRTLEEAKEDIRKDLATAAAAEEVTNVHDRYEDLRAGGSSLADAAKQLNLKPVTIDAID 419

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
            AG D KG  +  +P   QL   VF K +P ++   + L    Y+W  + + IPARDR L
Sbjct: 420 AAGLDEKGDAIQDLP-SPQLAQEVF-KTEPGTEALPINLGREGYIWFDVDQIIPARDRTL 477

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            EV  DV  DW   +    +++KA++L     K G+    +   LG ++   + + R  +
Sbjct: 478 AEVRDDVVADWTAEQQRTALATKADELKARVEK-GETLAAVAGELGLAVEQKSGLRRT-S 535

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV----TNSKVGPVQEKDKFISYLT 595
           E+  FG   I+ VFSG   M       +G S ++FKV    TN+    +   D+  + + 
Sbjct: 536 EDAIFGRQTITAVFSGAEGMTGTAADADGSSRILFKVTAVDTNAPADALANDDQQFAAIA 595

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
           +    D+LD ++  L++ Y VT++  L  + + G
Sbjct: 596 RAAGDDMLDQMVNRLQNDYGVTINQALADQAMVG 629


>gi|154253607|ref|YP_001414431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157557|gb|ABS64774.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum
           lavamentivorans DS-1]
          Length = 631

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 164/629 (26%), Positives = 314/629 (49%), Gaps = 10/629 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ +  WVAK+ + +L + F +WG++D +F+  G  TV  VG QK+  +++    
Sbjct: 1   MLDSLRRNASGWVAKVLIGLLALSFAVWGIAD-IFTGFGGDTVAEVGDQKIDAATYQVEL 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E+   SQ++G  ++ ++AR  G+D+  L  L+S A LD    D+GL      V  +I 
Sbjct: 60  RNEMNQFSQRLGQPLSLDQARQFGIDRAALSRLISLAALDGAASDLGLAVGDEAVGIDIT 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P   G   +F  D+F   L + GI+E+ +I+   + +SR  V+ +   G+     L++
Sbjct: 120 TDPNLQGPFGRFDRDLFRQSLQQNGISEERFIEQRRRAMSRKQVIEVIQVGVAAPEALIE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              RF  E R   Y++L    V  IADP    + +++E     +  PE +  S ++ +  
Sbjct: 180 MVSRFQEETRVAGYVILPQSLVGEIADPDEETVQKFYEAGASAFTLPETRDFSIMVLEPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +  + + +S ++LQA YE+ + +Y  PE R V Q+ F +++EA+EA   L+ G+    + 
Sbjct: 240 DVTRTMAVSEEDLQAAYEQRRGEYDVPERRDVHQITFASEEEANEALTKLRGGENVETVV 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +  G ++ D+ LG  S++ +    LAD+ FSL   G ++  + G  G+ I HV+ I+P  
Sbjct: 300 KGLGLTMKDVDLGKVSRDDMLSPELADAAFSLEGTG-YSEPVRGPLGWSILHVTGIEPGK 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             ++++VK+++   + +  A +++ +    +E+  A G  + ++++R  +    +  +  
Sbjct: 359 PSTYEDVKEELRAAIELELARDQIYDIQNTIEDARAGGEPLADVAKRYNLTVRSIDGITA 418

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            GK   G  V  +P    LL  V+ ++    +   +      Y WV+I    PA  + L+
Sbjct: 419 DGKTRNGDTV-ELPELPDLLNTVY-ENQQGDQIPPLDSGKDGYYWVEIDAVNPAELQPLD 476

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  K A+++ + A  LV E    G++F  I    G S+L+T  + R   +
Sbjct: 477 EVRDRVVSIWKQQKRADDLEALATSLV-ERGNAGESFEKIAAEYGRSVLSTPPLQRY-AQ 534

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK----DKFISYLTQ 596
           N  F    ++++F+ P       P+  G S +V +V + +   +        +  + L  
Sbjct: 535 NDTFSRTAVTRLFAAPEGGFTFGPVGLGDSLIVMQVKDVRSPQLDANSDKYKETRTTLVD 594

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            +  D+L + +   + +  V V++ L Q+
Sbjct: 595 AIQADMLQTFVVGYQQELGVEVNNTLFQQ 623


>gi|240141517|ref|YP_002965997.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium
           extorquens AM1]
 gi|240011494|gb|ACS42720.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium
           extorquens AM1]
          Length = 634

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 159/640 (24%), Positives = 301/640 (47%), Gaps = 17/640 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+ IR AS+ W+ K+ L V+F  FLI G++    +  F    S+ V +VG+  +     
Sbjct: 1   MLQSIRSASQHWLGKVVLSVIF-TFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEV 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ +L     ++   +  ++AR++GL++++L  L++ A LDQ   D+GL      V 
Sbjct: 60  RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVL 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   +  F   +F   L R G+NE  ++     +++R  +    V  M    
Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMLVPQ 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            + +   R+  E R    + L       I  P++  L  ++E  K ++RAPEY+ ++ ++
Sbjct: 180 AIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNLLV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295
            D     K  E+S+DE +  Y+ N  ++   E RT++Q+ FP++  A EA   ++ G+  
Sbjct: 240 LDPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGESP 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  +A ++G     + LG+ +K  + D ++ ++ F+L ++G  +  + G FG V+  V+ 
Sbjct: 300 FETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRVTA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           I+P     F EVK +I  ++ + +  +    +    +E+  A    + EI++ + +  + 
Sbjct: 359 IEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQDAIEDARASAKPLAEIAKDQGLTLLS 418

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           +P VD  G D  G+ VA IP KE  L   F  D   +    +    G  +W  + +  P+
Sbjct: 419 IPAVDAQGNDPSGQPVAGIPDKESTLPAAFRADVG-NDTEVLRTKAGGAIWYDVVKIDPS 477

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
            ++ L EV  +V K W   +  + + +K+ +L     K G+    + +  G  L T  +I
Sbjct: 478 HEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQEAGVPLKTITEI 536

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
            R   ++     + + ++F+ PV      P   G    VFKVT + +           + 
Sbjct: 537 GRNQAKDD-LSTEIVERIFTTPVGKAASAPA--GEGRAVFKVTAATMPAFVPGTPSDGQL 593

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           ++ L   +  D+L   IA ++    V V+   ++R   GE
Sbjct: 594 VTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633


>gi|218533006|ref|YP_002423822.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           chloromethanicum CM4]
 gi|218525309|gb|ACK85894.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           chloromethanicum CM4]
          Length = 634

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 159/640 (24%), Positives = 301/640 (47%), Gaps = 17/640 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+ IR AS+ W+ K+ L V+F  FLI G++    +  F    S+ V +VG+  +     
Sbjct: 1   MLQSIRSASQHWLGKVVLSVIF-TFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEV 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ +L     ++   +  ++AR++GL++++L  L++ A LDQ   D+GL      V 
Sbjct: 60  RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVL 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   +  F   +F   L R G+NE  ++     +++R  +    V  M    
Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPVPQ 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            + +   R+  E R    + L       I  P++  L  ++E  K ++RAPEY+ ++ ++
Sbjct: 180 AIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNLLV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295
            D     K  E+S+DE +  Y+ N  ++   E RT++Q+ FP++  A EA   ++ G+  
Sbjct: 240 LDPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGETP 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  +A ++G     + LG+ +K  + D ++ ++ F+L ++G  +  + G FG V+  V+ 
Sbjct: 300 FETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRVTA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           I+P     F EVK +I  ++ + +  +    +    +E+  A    + EI++ + +  + 
Sbjct: 359 IEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQDAIEDARASAKPLAEIAKDQGLTLVS 418

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           +P VD  G D  G+ VA IP KE  L   F  D   +    +    G  +W  + +  P+
Sbjct: 419 IPAVDAQGNDPSGQPVAGIPDKETTLPAAFRADVG-NDTEVLRTKAGGAIWYDVVKIDPS 477

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
            ++ L EV  +V K W   +  + + +K+ +L     K G+    + +  G  L T  +I
Sbjct: 478 HEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQETGVPLKTITEI 536

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
            R   ++     + + ++F+ PV      P   G    VFKVT + +           + 
Sbjct: 537 GRNQAKDD-LSTEIVERIFTTPVGKAASAPA--GEGRAVFKVTAATMPAFVPGTPSDGQL 593

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           ++ L   +  D+L   IA ++    V V+   ++R   GE
Sbjct: 594 VTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633


>gi|170743494|ref|YP_001772149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
           4-46]
 gi|168197768|gb|ACA19715.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
           4-46]
          Length = 632

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 157/637 (24%), Positives = 309/637 (48%), Gaps = 13/637 (2%)

Query: 1   MLEIIRKASRTWVAKIF----LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+  R AS +W+ KI       +L     I+G+ D +F   G++ V +VG  K+   + 
Sbjct: 1   MLQGFRAASESWLGKIVITVVFGLLIAGLAIFGIGD-IFRGGGTAAVATVGSTKISAEAV 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            ++++ ++  ++++    +  ++AR++GLD+++L  LV+ ATLDQ   ++GL      V 
Sbjct: 60  RSAYQNQIQRLARQARRPITPDQARALGLDREVLSALVTEATLDQKTRELGLRVGDDAVI 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G +  F   VF   L + G++E  ++     + +R  +       +    
Sbjct: 120 RLIKEEPAFKGANGAFDIGVFNDTLRQAGLSEAAFVQEQRAVAARLQLAESLTADLTVPL 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            + D   R+  E RS  +I+L       I  P+      ++E++K  +RAPE + ++ ++
Sbjct: 180 AVRDAIHRYTTERRSAAFILLPESAAGEIPAPTEEEARTYYEEHKGGFRAPEIRGVTILV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295
            D     K   ++ +E +A Y+ ++ +Y +PE RT++Q+VFPN+ +A  A + ++ G+  
Sbjct: 240 LDPTTLAKPDAVTAEEARARYDADRGRYGTPEKRTIQQIVFPNEADAAAALKRIRDGEAP 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  +A E+G     + LG+F++  + D ++AD+ F+L + G  +  + G FG V+  V+ 
Sbjct: 300 FESIAGERGLDPKSLDLGTFTRAELFDPAVADAAFALPQ-GTVSEPVKGRFGTVLLRVTA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+P     F+EV   I  ++   +A + +++ +  +E+  A    + EI+R   +  + +
Sbjct: 359 IEPGSIKPFEEVADQIRTEIARERARDGLEKVHDAIEDQRAGAKPLTEIARERDLPLVTV 418

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
           P  D  G+D KG+ V  +P K+ +L  +F  +   +    +    G Y+W  +    PA 
Sbjct: 419 PATDAQGRDPKGQPVEGLPDKDAVLPAIFRSEMG-ADSEALRTRAGGYLWYDVTRIDPAH 477

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
           DR L+EV   V   WK  +  + +++KA +      K G+    +    G      + + 
Sbjct: 478 DRPLDEVRDQVAAQWKADEVEKRLAAKAREAAERLDK-GETIEAVAAAYGVEARHASDLA 536

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--FISY 593
           R   ++     + + ++F+  V         + +    FKVT++ V P+    +      
Sbjct: 537 RGRAKDGLTP-ESVGRIFATAVGKTGSASAGDKV-RAAFKVTSATVPPLPSGPQGGVEQQ 594

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
             Q +  D+L   IA  + Q  V+V++   +R + GE
Sbjct: 595 YRQALADDVLAEYIADAQRQAGVSVNEAAFRRAIGGE 631


>gi|163854063|ref|YP_001642106.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           extorquens PA1]
 gi|163665668|gb|ABY33035.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           extorquens PA1]
          Length = 634

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 160/640 (25%), Positives = 302/640 (47%), Gaps = 17/640 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+ IR AS+ W+ K+ L V+F  FLI G++    +  F    S+ V +VG+  +     
Sbjct: 1   MLQSIRSASQHWLGKVVLSVIF-TFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEV 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ +L     ++   +  ++AR++GL++++L  L++ A LDQ   D+GL      V 
Sbjct: 60  RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVL 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   +  F   +F   L R G+NE  ++     +++R  +    V  M    
Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPVPQ 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            + +   R+  E R    + L       I  P++  LT ++E  K ++RAPEY+ ++ ++
Sbjct: 180 AIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALTTYYENNKASFRAPEYRSLNLLV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295
            D     K  E+S+DE +  Y+ N  ++   E RT++Q+ FP++  A EA   ++ G+  
Sbjct: 240 LDPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGETP 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  +A ++G     + LG+ +K  + D ++ ++ F+L ++G  +  + G FG V+  V+ 
Sbjct: 300 FETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRVTA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           I+P     F EVK +I  ++ + +  +    +    +E+  A    + EI++ + +  + 
Sbjct: 359 IEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQDAIEDARASAKPLAEIAKDQGLTLLS 418

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           +P VD  G D  G+ VA IP KE  L   F  D   +    +    G  +W  + +  P+
Sbjct: 419 IPAVDAQGNDPSGQPVAGIPDKETTLPAAFRADVG-NDTEVLRTKAGGAIWYDVVKIDPS 477

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
            ++ L EV  +V K W   +  + + +K+ +L     K G+    + +  G  L T  +I
Sbjct: 478 HEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQEAGVPLKTITEI 536

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
            R   ++     + + ++F+ PV      P   G    VFKVT + +           + 
Sbjct: 537 GRNQAKDD-LSTEIVERIFTTPVGKAASAPA--GEGRAVFKVTAATMPAFVPGTPSDGQL 593

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           ++ L   +  D+L   IA ++    V V+   ++R   GE
Sbjct: 594 VTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633


>gi|192291606|ref|YP_001992211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris TIE-1]
 gi|192285355|gb|ACF01736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris TIE-1]
          Length = 629

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 156/625 (24%), Positives = 295/625 (47%), Gaps = 15/625 (2%)

Query: 5   IRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           +RKAS  W+ K    I + VL V F +WG++D +F   G ST+  +G  ++    F  ++
Sbjct: 1   MRKASSNWIGKTIMTIVMGVLIVSFGVWGIAD-VFRGFGRSTLAKIGSTEISTEQFRQTY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
              L  I ++ G  +  ++AR++G+D+++L   ++ A LD+    +GL          I 
Sbjct: 60  NDRLQQIGRQFGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTMKSIL 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F G + +F  + F   + + G  E+ Y+    ++  R  + G    G+ P   L+ 
Sbjct: 120 EDPNFKGANGQFDANRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGSLTAGLEPPKTLMQ 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              +F  E R++DY+ L +     IA PS A LT +++ +K  +RAPEY+++S+++    
Sbjct: 180 ALSQFQNEERAIDYLKLTDAQAGTIAAPSPADLTAFYDSHKAQFRAPEYRKVSFLVVTPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
              K  E+S+ + Q  +E+ K+K  +PE R + Q+VFP+ +EA  A   +  G  F  LA
Sbjct: 240 SIAKWAEVSDADAQKLFEQRKDKLSTPEKRQILQIVFPSVEEAQAARAKIASGTSFADLA 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +E+G    D+ LG  S+  + D  +A + F+L    + +  + G FG V+  V+ I+P  
Sbjct: 300 KERGVKPGDLDLGLVSQSEMLDQKVAAAAFALPLN-EVSQPVQGQFGTVLLEVTKIEPGK 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
              +  V   +   +   +A ++V+E + ++E+    G S+ + +++  + ++ +  +D 
Sbjct: 359 QPDYASVAASLKRDLAQERARKQVQELHDKMEDARGGGASVVDAAKQLGLTAVTVDALDR 418

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           AG+   G  VA+IP   +L    F  +  +  D         Y+W  I    P+ +R L+
Sbjct: 419 AGRGPDGAPVASIPQGLELANAAFNSEPGVDNDAISF--QNGYVWYDILGITPSHERPLD 476

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V+  W+  +  E++   A +LV +  + G    D+    G ++ T + I R +  
Sbjct: 477 EVKDKVEAGWRAEQVTEKLRKLAAELV-QKMQGGAKLADVA-PAGVTVQTASGIKR-EGA 533

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFISYLTQ 596
           +       +  VF    +        +   + VF+VT   V        +  +    L Q
Sbjct: 534 DAGLPNTVVDAVFRTAKDGAGQVQGGSATEWYVFRVTGDTVPTADLNAPQMQQLKDNLVQ 593

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDN 621
            +  + +   IA+L+      V+  
Sbjct: 594 RLRDEQVGEYIAWLEKDIGTKVNQE 618


>gi|188584391|ref|YP_001927836.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           populi BJ001]
 gi|179347889|gb|ACB83301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           populi BJ001]
          Length = 634

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 159/640 (24%), Positives = 302/640 (47%), Gaps = 17/640 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+ IR AS+ W+ K+ L V+F  FLI G++    +  F    S+TV +VG+  +     
Sbjct: 1   MLQSIRSASQHWLGKVVLTVIF-TFLIAGVAIFGVEEFFRGGSSTTVATVGKTPISAEEV 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ +L     ++   +  ++AR++GL++++L  L++ A LDQ   D+GL      V 
Sbjct: 60  RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTADLGLAVSDAAVL 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   +  F   +F   L R G+NE  ++     +++R  +    V  +    
Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAELPVPQ 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            + +   R+  E R    + L       I  P+   L+ +++  K ++RAPEY+ ++ ++
Sbjct: 180 AMREAVHRYSTERRDAAVLTLAPSVAGEIPAPTEEELSAYYDNNKASFRAPEYRSLNLLV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295
            D     K  E+S +E +  Y+ N  ++  PE RT++Q+ FP++  A EA   ++ G+  
Sbjct: 240 LDPAALAKPDEVSEEEARKVYDANHSRFGKPERRTIQQISFPDEAAAKEARAKIESGETP 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  +A  +G     + LG+ +K  + D ++ D+ F+L ++G  +  + G FG V+  V+ 
Sbjct: 300 FETVAAARGLDPKQLDLGTLTKAELFDPAVGDAAFAL-EQGKVSEPVKGRFGTVLLRVTA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           I+P     F EVK +I  ++ + +  +    +    +E+  A    + EI++ + +  + 
Sbjct: 359 IEPGTVKPFDEVKDEIRREIALKRVRDGGFDKVQDAIEDARASAKPLAEIAKDQGLTLLS 418

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           +P VD  G D  G+ VA IP KE  L   F  D   +    +    G  +W  + +  P+
Sbjct: 419 IPAVDAQGNDPSGQPVAGIPDKETTLPAAFRADVG-NDTEVLRTKTGGAIWYDVVKIDPS 477

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
            ++ L EV  +  K W   +  + + +K+ +L     K G+    + +  G  L T  +I
Sbjct: 478 HEKPLAEVRDEAVKGWTRAEVEKRLVAKSKELTERLEK-GEAIETLAQEAGLPLKTVGEI 536

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
            R   ++     + + ++F+ PV      P  +G    VFKVT + +           + 
Sbjct: 537 ARNQTKDD-LSTEIVERIFATPVGKAASAP--SGEGRAVFKVTAATMPAFVPGTPSDTQL 593

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           ++ L   +  D+L   IA ++    V V+   ++R L GE
Sbjct: 594 VASLRTAIADDVLAEFIAEVQKSAGVNVNQTALRRALGGE 633


>gi|39935954|ref|NP_948230.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris CGA009]
 gi|39649808|emb|CAE28330.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodopseudomonas
           palustris CGA009]
          Length = 633

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 156/629 (24%), Positives = 295/629 (46%), Gaps = 15/629 (2%)

Query: 1   MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  +RKAS  W+ K    I + VL V F +WG++D +F   G ST+  +G  ++    F
Sbjct: 1   MLRGMRKASSNWIGKTIMTIVMGVLIVSFGVWGIAD-VFRGFGRSTLAKIGSTEISTEQF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             ++   L  I ++ G  +  ++AR++G+D+++L   ++ A LD+    +GL        
Sbjct: 60  RQTYNDRLQQIGRQFGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTM 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F G + +F  + F   + + G  E+ Y+    ++  R  + G    G+    
Sbjct: 120 KSILEDPNFKGANGQFDANRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGSLTAGLEAPK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L+    +F  E R++DY+ L +     IA PS A LT +++ +K  +RAPEY++IS+++
Sbjct: 180 TLMQALSQFQSEERAIDYLKLTDAQAGTIAAPSPADLTAFYDSHKAQFRAPEYRKISFLV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K  E+S+ + Q  +E+ K+K  +PE R + Q+VFP+ +EA      +  G  F
Sbjct: 240 VTPESIAKWAEVSDADAQKLFEQRKDKLSTPEKRQLLQIVFPSVEEAQAGRAKIASGTSF 299

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             LA+E+G   +D+ LG  S+  + D  +A + F+L    + +  + G FG V+  V+ I
Sbjct: 300 ADLAKERGVKPADLDLGLVSQSEMLDQKVAAAAFALPLN-EVSQPVQGQFGTVLLEVTKI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +      +  V   +   +   +A ++V+E + ++E+    G S+ + +++  + ++ + 
Sbjct: 359 ETGKQPDYASVAASLKRDLAQERARKQVQELHDKMEDARGGGASVVDAAKQLGLTAVTVD 418

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            +D AG+   G  VA+IP   +L    F  +  +  D         Y+W  I    P+ +
Sbjct: 419 AIDRAGRGPDGAPVASIPQGLELANAAFNSEPGVDNDAISF--QNGYVWYDILGITPSHE 476

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L+EV   V+  W+  +  E++   A +LV +  + G    D+    G ++ T + I R
Sbjct: 477 RPLDEVKDKVEAGWRAEQVTEKLRKLAAELVQKL-QGGAKLSDVA-PAGVTVQTASGIKR 534

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFIS 592
            +  +       +  VF    +        +   + VF+VT   V        +  +   
Sbjct: 535 -EGADAGLPNTVVDAVFRTAKDGAGQVQGGSATEWYVFRVTGDTVPTADLNAPQMQQLKD 593

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
            L Q +  + +   IA+L+      V+  
Sbjct: 594 NLVQRLRDEQVGEYIAWLEKDIGTKVNQE 622


>gi|306841864|ref|ZP_07474544.1| rotamase family protein [Brucella sp. BO2]
 gi|306287994|gb|EFM59396.1| rotamase family protein [Brucella sp. BO2]
          Length = 628

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 182/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEVHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q +K G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAARQKIKAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L + G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L  +  + G     I   LG    T   I R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRVEEL-KKRLEGGTTLDTIASELGLEKQTKRGITRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G   +V      +  + ++FKVT        GP    +    YL  
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 596 ALADDVLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|254714212|ref|ZP_05176023.1| rotamase family protein [Brucella ceti M644/93/1]
 gi|254717648|ref|ZP_05179459.1| rotamase family protein [Brucella ceti M13/05/1]
 gi|261219487|ref|ZP_05933768.1| rotamase [Brucella ceti M13/05/1]
 gi|261321982|ref|ZP_05961179.1| rotamase [Brucella ceti M644/93/1]
 gi|260924576|gb|EEX91144.1| rotamase [Brucella ceti M13/05/1]
 gi|261294672|gb|EEX98168.1| rotamase [Brucella ceti M644/93/1]
          Length = 628

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 180/631 (28%), Positives = 324/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  L++   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLNEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L + G  +PV+ G+FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGNFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L  +  ++G     I   LG    T   I R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G   +V      +  + ++FKVT        GP    +    YL  
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|306844003|ref|ZP_07476598.1| rotamase family protein [Brucella sp. BO1]
 gi|306275758|gb|EFM57482.1| rotamase family protein [Brucella sp. BO1]
          Length = 628

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 182/631 (28%), Positives = 324/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAARQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L + G  +PV+ GSFG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGSFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L  +  ++G     I   LG    T   I R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G   +V      +  + ++FKVT        GP    +    YL  
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 596 ALADDVLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|254706677|ref|ZP_05168505.1| rotamase family protein [Brucella pinnipedialis M163/99/10]
 gi|261314138|ref|ZP_05953335.1| rotamase [Brucella pinnipedialis M163/99/10]
 gi|261303164|gb|EEY06661.1| rotamase [Brucella pinnipedialis M163/99/10]
          Length = 628

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 181/631 (28%), Positives = 323/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L + G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L  +  ++G     I   LG    T   I R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNPRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G   +V      +  + ++FKVT        GP    +    YL  
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|209885424|ref|YP_002289281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
           carboxidovorans OM5]
 gi|209873620|gb|ACI93416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
           carboxidovorans OM5]
          Length = 704

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 158/638 (24%), Positives = 293/638 (45%), Gaps = 17/638 (2%)

Query: 1   MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML  IR  +      W+  +   VL + F +WG++D +F  S  +T+ +VG  ++    F
Sbjct: 71  MLRGIRNVTSNRVGKWIMSLLFGVLIISFAVWGIAD-IFKGSTQTTLATVGNTEISMEQF 129

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             ++  +L  IS++I   +N+ + R+ GLD+++L   ++ A LD+    +GL      + 
Sbjct: 130 RTAYTDKLQQISRQIRRPINANQGRAFGLDRQLLQQTIAEAALDEETRRLGLTMSDAEMI 189

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I+  P F G D KF    F + +   G  E+ Y+    ++  R ++V   V G+ PS 
Sbjct: 190 RTISGDPTFAGPDGKFDARRFAAAIRDNGYTEQRYVAEQRRVTLRRELVSSIVAGLEPSK 249

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             ++   RF  E R++DY  +       I  PS  VL  +++++K  +RAPEY+++ Y+ 
Sbjct: 250 TQIEALSRFQNEQRTIDYAKIGPEQAGTIETPSQQVLDTYYDEHKAQFRAPEYRKVVYLT 309

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
               E  KK+ +S+++ +  Y+  +++Y +P  R V Q+ FP++  A  A + +  G  F
Sbjct: 310 LSPDELAKKVAVSDEDARKVYDSRRDEYATPAKREVLQIAFPSEDAAKTAREKIAGGTSF 369

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             LA+E   +  DI+LG  S+  + D ++A + F+L    + +  + G+   V+  ++ I
Sbjct: 370 EDLAKEMKLTPGDINLGLTSEASLGDPTIAKAAFALPLN-EVSQPVKGALATVLLKITKI 428

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P    +++ V   I  ++   +           +E+  + G ++ E  ++  + ++ + 
Sbjct: 429 EPGSQSTYESVAPAIKKEIAEQRVRADFDNLRNTIEDERSGGATIPEAGQKVGLDAVTVD 488

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            +D AG+   GKE AA+P    L+   FG D  +  D       G  +W  +     +RD
Sbjct: 489 -IDRAGRTPDGKE-AALPKGVDLVTAAFGSDVGVENDPL--TFPGGEVWFDVLGVTASRD 544

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           R L+EV   V   W+  + A  + +KA  LV   +K G  F+      G S  T++   R
Sbjct: 545 RALDEVKDQVATRWREDQVATRLRAKAKDLVEAINKGGA-FKTEATKAGLSAQTSSPFKR 603

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCF-PIENGLSYVVFKVTNSKVG----PVQEKDKFI 591
            D  N       +   F  P +          G   VV KV N          ++  K  
Sbjct: 604 DDKVNG-LPDQAVDVAFRTPKDTAATADNGAAGNGLVVLKVVNVTTPTVDLESEDSKKMK 662

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
             L Q ++ + +   I +L+++  V V+ N        
Sbjct: 663 EALEQNLSDEQIGQYITHLEAKAGVQVNQNAFAIATGA 700


>gi|23502017|ref|NP_698144.1| rotamase family protein [Brucella suis 1330]
 gi|161619091|ref|YP_001592978.1| rotamase family protein [Brucella canis ATCC 23365]
 gi|254704427|ref|ZP_05166255.1| rotamase family protein [Brucella suis bv. 3 str. 686]
 gi|254710215|ref|ZP_05172026.1| rotamase family protein [Brucella pinnipedialis B2/94]
 gi|256031709|ref|ZP_05445323.1| rotamase family protein [Brucella pinnipedialis M292/94/1]
 gi|256369565|ref|YP_003107075.1| rotamase family protein [Brucella microti CCM 4915]
 gi|260566326|ref|ZP_05836796.1| peptidyl-prolyl cis-trans isomerase D [Brucella suis bv. 4 str. 40]
 gi|261317773|ref|ZP_05956970.1| rotamase [Brucella pinnipedialis B2/94]
 gi|261755104|ref|ZP_05998813.1| rotamase [Brucella suis bv. 3 str. 686]
 gi|265988804|ref|ZP_06101361.1| rotamase [Brucella pinnipedialis M292/94/1]
 gi|23347969|gb|AAN30059.1| rotamase family protein [Brucella suis 1330]
 gi|161335902|gb|ABX62207.1| rotamase family protein [Brucella canis ATCC 23365]
 gi|255999727|gb|ACU48126.1| rotamase family protein [Brucella microti CCM 4915]
 gi|260155844|gb|EEW90924.1| peptidyl-prolyl cis-trans isomerase D [Brucella suis bv. 4 str. 40]
 gi|261296996|gb|EEY00493.1| rotamase [Brucella pinnipedialis B2/94]
 gi|261744857|gb|EEY32783.1| rotamase [Brucella suis bv. 3 str. 686]
 gi|264661001|gb|EEZ31262.1| rotamase [Brucella pinnipedialis M292/94/1]
          Length = 628

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 181/631 (28%), Positives = 323/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L + G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L  +  ++G     I   LG    T   I R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G   +V      +  + ++FKVT        GP    +    YL  
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|62290052|ref|YP_221845.1| rotamase family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699979|ref|YP_414553.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis biovar
           Abortus 2308]
 gi|189024292|ref|YP_001935060.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus S19]
 gi|237815561|ref|ZP_04594558.1| rotamase family protein [Brucella abortus str. 2308 A]
 gi|254689364|ref|ZP_05152618.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 6 str.
           870]
 gi|254697497|ref|ZP_05159325.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730394|ref|ZP_05188972.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 4 str.
           292]
 gi|256257610|ref|ZP_05463146.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 9 str.
           C68]
 gi|260546604|ref|ZP_05822343.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus NCTC 8038]
 gi|260754881|ref|ZP_05867229.1| rotamase [Brucella abortus bv. 6 str. 870]
 gi|260758098|ref|ZP_05870446.1| rotamase [Brucella abortus bv. 4 str. 292]
 gi|260761922|ref|ZP_05874265.1| rotamase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883893|ref|ZP_05895507.1| rotamase [Brucella abortus bv. 9 str. C68]
 gi|297248452|ref|ZP_06932170.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 5 str.
           B3196]
 gi|62196184|gb|AAX74484.1| rotamase family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616080|emb|CAJ11118.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis biovar
           Abortus 2308]
 gi|189019864|gb|ACD72586.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus S19]
 gi|237788859|gb|EEP63070.1| rotamase family protein [Brucella abortus str. 2308 A]
 gi|260095654|gb|EEW79531.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus NCTC 8038]
 gi|260668416|gb|EEX55356.1| rotamase [Brucella abortus bv. 4 str. 292]
 gi|260672354|gb|EEX59175.1| rotamase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674989|gb|EEX61810.1| rotamase [Brucella abortus bv. 6 str. 870]
 gi|260873421|gb|EEX80490.1| rotamase [Brucella abortus bv. 9 str. C68]
 gi|297175621|gb|EFH34968.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 5 str.
           B3196]
          Length = 628

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 180/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L + G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L  +  ++G     I   LG    T   I R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G   +V      +  + ++FKVT        GP    +    YL  
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTKPAAAGPEAIPEDQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+L  ++  L+ QY V V+  +I    
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAF 626


>gi|256061222|ref|ZP_05451373.1| rotamase family protein [Brucella neotomae 5K33]
 gi|261325229|ref|ZP_05964426.1| rotamase [Brucella neotomae 5K33]
 gi|261301209|gb|EEY04706.1| rotamase [Brucella neotomae 5K33]
          Length = 628

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 182/631 (28%), Positives = 323/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A++TW+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQTWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L + G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQKRSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L  +  ++G     I   LG    T   I R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G   +V      +  + ++FKVT        GP    +    YL  
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|225627608|ref|ZP_03785645.1| rotamase family protein [Brucella ceti str. Cudo]
 gi|256159868|ref|ZP_05457597.1| rotamase family protein [Brucella ceti M490/95/1]
 gi|256255110|ref|ZP_05460646.1| rotamase family protein [Brucella ceti B1/94]
 gi|260168841|ref|ZP_05755652.1| rotamase family protein [Brucella sp. F5/99]
 gi|261222305|ref|ZP_05936586.1| rotamase [Brucella ceti B1/94]
 gi|261758329|ref|ZP_06002038.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. F5/99]
 gi|265998269|ref|ZP_06110826.1| rotamase [Brucella ceti M490/95/1]
 gi|225617613|gb|EEH14658.1| rotamase family protein [Brucella ceti str. Cudo]
 gi|260920889|gb|EEX87542.1| rotamase [Brucella ceti B1/94]
 gi|261738313|gb|EEY26309.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. F5/99]
 gi|262552737|gb|EEZ08727.1| rotamase [Brucella ceti M490/95/1]
          Length = 628

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 181/631 (28%), Positives = 323/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L + G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L  +  ++G     I   LG    T   I R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G   +V      +  + ++FKVT        GP    +    YL  
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTESAAAGPEAIPEDQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|254701881|ref|ZP_05163709.1| rotamase family protein [Brucella suis bv. 5 str. 513]
 gi|261752444|ref|ZP_05996153.1| rotamase [Brucella suis bv. 5 str. 513]
 gi|261742197|gb|EEY30123.1| rotamase [Brucella suis bv. 5 str. 513]
          Length = 628

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 181/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAACNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L + G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L  +  ++G     I   LG    T   I R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G     Q+F G   +V      +  + ++FKVT        GP    +    YL  
Sbjct: 537 ADI-GLAATEQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|254719202|ref|ZP_05181013.1| rotamase family protein [Brucella sp. 83/13]
 gi|265984198|ref|ZP_06096933.1| rotamase [Brucella sp. 83/13]
 gi|306837950|ref|ZP_07470808.1| rotamase family protein [Brucella sp. NF 2653]
 gi|264662790|gb|EEZ33051.1| rotamase [Brucella sp. 83/13]
 gi|306406874|gb|EFM63095.1| rotamase family protein [Brucella sp. NF 2653]
          Length = 628

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 181/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++ ++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAISVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +       I  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADTIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAARQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L + G  +PV+ GSFG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGSFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  VD 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAVDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L  +  ++G     I   LG    T   I R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G   +V      +  + ++FKVT        GP    +    YL  
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 596 ALADDVLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|118589929|ref|ZP_01547333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stappia aggregata
           IAM 12614]
 gi|118437426|gb|EAV44063.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stappia aggregata
           IAM 12614]
          Length = 630

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 179/635 (28%), Positives = 315/635 (49%), Gaps = 10/635 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK + TWVAK+F+ +L + F +WG+S  L  V G +T   VG  +V    F  ++
Sbjct: 1   MLDALRKGAGTWVAKLFIALLIMSFAVWGISGFLTGV-GQNTAAKVGDTEVSLFDFDRAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+LG ++Q+ G  +      ++G+ ++ L  LV+ A ++   +++ L     R+   I 
Sbjct: 60  RQDLGRLAQQFGRQLTPAEGAALGVPQQTLGKLVAEAAMNNTAQNMKLGVSDERLATIIQ 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F G   ++  +     L   G  E EY+    K+  R  +     G M+     L+
Sbjct: 120 SDPAFQGPGGRYDKNRLQQVLRASGYREDEYVVERRKVAERAQLAEGIAGSMKAPMTYLE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E RS DY+++    +  I DP+  VLT +FE+ K+++RAPE++ I Y+     
Sbjct: 180 VLDTYQGETRSADYLMVTPEFIGEIEDPAEDVLTTYFEEKKEDFRAPEFREIKYVTLTPA 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
              +  +IS+D+ +AEYE+  E +F PE R + Q+ FP+Q+ A+EA Q L  GK F +L 
Sbjct: 240 SLARPDDISDDDARAEYERRSEDFFQPERRKIRQMSFPSQQAAEEAAQELANGKTFDELM 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E+  + +D++LG  +K    D ++ D+ FS  ++G  +  + G F  VI +V  I P  
Sbjct: 300 GERNLTDNDVTLGVMAKADFLDEAIGDAAFS-QEEGATSGAVEGRFSTVIVNVEEILPES 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T  F++VK +I   +   +A  ++ +    +E+  A G  +DE+  R  +        D 
Sbjct: 359 TKPFEDVKDEIVQSLAKEQAEREILDLLDEVEDARAGGALLDEVGERFSLTVETPAAFDA 418

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           +G    GK  AA+P  E L+   F  D  +  D  +   +  ++W  + + IP+R+R L+
Sbjct: 419 SGNGEDGKP-AALPEAEGLVAGTFDSDIGIEND-VLQFGEQGFLWYDVVKVIPSRERTLD 476

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV  DV   WK  + A+ +S  A  L+ + ++ G  F  +    G  + +  ++ R +  
Sbjct: 477 EVRADVIAAWKKDELAKRLSDTAADLLAK-TEGGTPFIALSAETGLEVKSATELKR-NTP 534

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
              FG D +S VFSGP+         +G   VV KVT S V        +       L+Q
Sbjct: 535 AGDFGRDAVSAVFSGPIGTTAIAEANDGEGRVVLKVTGSNVPEFQKDAPQVAALGQQLSQ 594

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
            +   LL   I+  +++  V +++  I + +  ++
Sbjct: 595 QIQDTLLGQFISDRETKAGVEINNAGIAQMIGLDQ 629


>gi|148560591|ref|YP_001259060.1| rotamase family protein [Brucella ovis ATCC 25840]
 gi|148371848|gb|ABQ61827.1| rotamase family protein [Brucella ovis ATCC 25840]
          Length = 628

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 182/631 (28%), Positives = 324/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L + G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             S  EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKSLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L  +  ++G     I   LG    T   I R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G   +V      +  + ++FKVT        GP    +    YL  
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|163843404|ref|YP_001627808.1| rotamase family protein [Brucella suis ATCC 23445]
 gi|163674127|gb|ABY38238.1| rotamase family protein [Brucella suis ATCC 23445]
          Length = 628

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 180/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L + G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +  +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATTADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L  +  ++G     I   LG    T   I R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G   +V      +  + ++FKVT        GP    +    YL  
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|227822015|ref|YP_002825986.1| peptidyl-prolyl cis-trans isomerse D [Sinorhizobium fredii NGR234]
 gi|227341015|gb|ACP25233.1| peptidyl-prolyl cis-trans isomerse D [Sinorhizobium fredii NGR234]
          Length = 630

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 191/631 (30%), Positives = 335/631 (53%), Gaps = 8/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A++T + K  L +L + F++WG    L     S  VV+VG  KV  S +  ++
Sbjct: 1   MLDSLRNAAQTRIVKGLLAILILSFMVWG-GQTLMVTGTSDAVVTVGDVKVSTSDYRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++L ++S+++G  +  ++AR+ G++ ++   LV+GA LDQ  ED+ L     R+   I 
Sbjct: 60  ERQLSLLSRQLGTPLTRQQARAFGVEAQVYSQLVAGAALDQLAEDMNLGLSEDRLARLIG 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FHG + +F    F S L   G+ E++YI + +++  R+ +V     G     +L+D
Sbjct: 120 EDPAFHGANGQFDRMTFSSVLRNAGLTEQDYIKNRSQVAVRSQIVDALSDGFAAPAILVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              ++  E R++DY++L+N ++ A+  P + VL  WFE +K NYRAPEY++ SYI  +  
Sbjct: 180 AVGKYRHETRTIDYLLLSNANIDAVKAPGDDVLAPWFESHKANYRAPEYRKFSYIKLEPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++++EL+A+YEK KE + +   RT+EQL FP+++ AD     L  G  F  L 
Sbjct: 240 DLVVNDAVTDEELRADYEKRKESFRTAATRTIEQLAFPSREAADAGAAKLSAGTSFDDLV 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           + +GKS +D+ LG F+KE +PD   A++ F++A  G  TPV+ G+FG VI  V+NI+   
Sbjct: 300 KAEGKSAADVLLGDFTKERMPDQKAAEAAFAVASDGGVTPVVEGAFGPVILRVTNIRQET 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             SF EVK+++   + ++ A +++   + ++E+  A G ++ E++ + K+    +  +D 
Sbjct: 360 VRSFDEVKEELRKDIALSVARDQLVGLHDKIEDERAAGATVKEVADQLKLKLATVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            GKD  G +V  +P +  LL  VF  +  L     V +    Y W  ++E IPARDR L+
Sbjct: 420 TGKDQNGDDVTGLPEQRALLQDVFKAEVGLET-LAVHIGRDGYAWFDLEEVIPARDRTLD 478

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV  +V  DW   +      +     + +  K+G    DI   LG  + T   ++R   +
Sbjct: 479 EVRDEVAADWTAEQ-QRVALAAKAAELKDRVKKGAKLADIAGELGLVVETKTGLSR-STQ 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
           +       I+  F GP   V           ++ +VT          +    + I  + +
Sbjct: 537 DAALSEAAIAAAFGGPNGHVANAAGMGSEGQILMQVTAVDDSAPANALDNDSRQIEAIAR 596

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               D+LD ++A L+S Y V+++  L ++ L
Sbjct: 597 ASGDDILDQMVATLQSVYGVSINQTLAEQAL 627


>gi|17987128|ref|NP_539762.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1
           str. 16M]
 gi|225852638|ref|YP_002732871.1| rotamase family protein [Brucella melitensis ATCC 23457]
 gi|256044795|ref|ZP_05447699.1| rotamase family protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113701|ref|ZP_05454505.1| rotamase family protein [Brucella melitensis bv. 3 str. Ether]
 gi|256263869|ref|ZP_05466401.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 2
           str. 63/9]
 gi|260565602|ref|ZP_05836086.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1
           str. 16M]
 gi|265991219|ref|ZP_06103776.1| rotamase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995055|ref|ZP_06107612.1| rotamase [Brucella melitensis bv. 3 str. Ether]
 gi|17982791|gb|AAL52026.1| peptidyl-prolyl cis-trans isomerase d [Brucella melitensis bv. 1
           str. 16M]
 gi|225641003|gb|ACO00917.1| rotamase family protein [Brucella melitensis ATCC 23457]
 gi|260151670|gb|EEW86764.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1
           str. 16M]
 gi|262766168|gb|EEZ11957.1| rotamase [Brucella melitensis bv. 3 str. Ether]
 gi|263002003|gb|EEZ14578.1| rotamase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094000|gb|EEZ17934.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 2
           str. 63/9]
 gi|326409157|gb|ADZ66222.1| rotamase family protein [Brucella melitensis M28]
 gi|326538867|gb|ADZ87082.1| rotamase family protein [Brucella melitensis M5-90]
          Length = 628

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 179/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +P+ RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPKTRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L + G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L  +  ++G     I   LG    T   I R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G   +V      +  + ++FKVT        GP    +    YL  
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTKPAAAGPEAIPEDQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+L  ++  L+ QY V V+  +I    
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAF 626


>gi|254693848|ref|ZP_05155676.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 3 str.
           Tulya]
 gi|261214133|ref|ZP_05928414.1| rotamase [Brucella abortus bv. 3 str. Tulya]
 gi|260915740|gb|EEX82601.1| rotamase [Brucella abortus bv. 3 str. Tulya]
          Length = 628

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 179/631 (28%), Positives = 321/631 (50%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +      AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L + G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L  +  ++G     I   L     T   I R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELDLEKQTKRGITRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G   +V      +  + ++FKVT        GP    +    YL  
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTKPAAAGPEAIPEDQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+L  ++  L+ QY V V+  +I    
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAF 626


>gi|294852479|ref|ZP_06793152.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. NVSL 07-0026]
 gi|294821068|gb|EFG38067.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. NVSL 07-0026]
          Length = 628

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 180/631 (28%), Positives = 323/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++W+AK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +    A
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L +  I  ++Y+++  K+  R  +V     GM+  + +L 
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSSIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E+RS DYI +  +   AI  PS  VL  +FE +K++Y+APEY++ISY+  +  
Sbjct: 181 ALALYQGESRSADYIDVPAKKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK ++ +PE RT+EQL F +   A+ A Q ++ G  F+ + 
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+ SD++LG+F K  IPD ++AD+ F+L + G  +PV+ G FG V+  V+ I P+ 
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I N +    A+  +   +   E+  + G +M +++++  +  + +  +D 
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GK V  +P  + LL  VF  +     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L  +  ++G     I   LG    T   I R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G   +V      +  + ++FKVT        GP    +    YL  
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  D+L  ++  L+ QY V V+  +I   L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626


>gi|110633989|ref|YP_674197.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium sp. BNC1]
 gi|110284973|gb|ABG63032.1| peptidyl-prolyl cis-trans isomerase D [Chelativorans sp. BNC1]
          Length = 628

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 182/631 (28%), Positives = 325/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RKA+ TWVAK+ LVVL V F +WG+S ++ + +    V++ G   V    +  ++
Sbjct: 1   MLDSLRKAATTWVAKLLLVVLVVSFAVWGISGSMLTGTSGD-VITAGGTSVSALDYRLAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            + +  +S++ G  +  E+A + G+D+++L  L +GA LD+   +IGL     ++    A
Sbjct: 60  DRRIAELSRQFGTRLTREQAVAFGIDEQVLSQLSAGAVLDETAREIGLGVSKDKLAELTA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F G D +F    F   L+R G+  ++Y+ +  +   R  ++     G+   + LL 
Sbjct: 120 SDPAFRGLDGRFDRSQFEFVLSRIGMRPEDYLKNREQAAVRQQIIDAVASGVSAPDELLR 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R+  E+R+++Y+ L    V  +  PS+  L  WFE+ KDNY APEY++I Y+  +  
Sbjct: 180 SLARYRGEDRTIEYVALPRSAVEPVEPPSDEQLQTWFEERKDNYAAPEYRKIEYVKLEAE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      IS++++++ Y++N+ +Y +PE R VEQL F + +EA  A +S++ G  F  L 
Sbjct: 240 DIADPSVISDEQVESYYQQNQAQYTTPERRQVEQLTFASAEEATAARESMRTGTTFEDLI 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           E QGK L D+SLG+ ++  IPD  +AD++FSL +    + V+ G+FG V+  V+ I P  
Sbjct: 300 ERQGKKLQDVSLGTLTRADIPDQVIADAVFSLTED-QVSDVVQGTFGPVLLRVTEITPEA 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                +VK++I  Q+ + +A+  + + Y + E+  A G ++ E + R  +    +  VD 
Sbjct: 359 VTPLDQVKEEIRQQLALDEANRLLLDTYDQYEDARAGGDTLQEAAERLSLTVGTIDAVDR 418

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G    G  V  +P    LL   F  +  + ++  + L    +++ ++ E +PARDR+  
Sbjct: 419 DGNKPDGTRVEDVPNLPALLAEAFQTEVGV-ENAPINLTGSGFLFYEVAEIVPARDREFS 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V +DW   +    + ++A  L  E  K GK   +I   LG   +    + R +  
Sbjct: 478 EVRDRVLEDWTEAEVTSRLDARAKAL-QEEIKNGKTLDEISTELGQEKMVKRGLKR-EAS 535

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS----KVGPVQEKDKFISYLTQ 596
           +   G  G++ VFS             G +  +F+VT              D   + + Q
Sbjct: 536 DADLGQTGVAAVFSVAKGETGTVANPAGDARFIFQVTEVFEPASATAESLPDDIKTAVNQ 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +  DLLD ++  L++++ VTV+   +Q+ L
Sbjct: 596 GLENDLLDQLVTRLQAEHGVTVNRTAMQQAL 626


>gi|319783646|ref|YP_004143122.1| peptidyl-prolyl cis-trans isomerase D [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169534|gb|ADV13072.1| peptidyl-prolyl cis-trans isomerase D [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 630

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 179/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59
           ML I+R A+ TWVAK  LV+L + FL+WG+S  L    +G  +V++ G  KV  + +  +
Sbjct: 1   MLGILRSAAGTWVAKGLLVLLVLSFLVWGVSGRLMGGLAGHDSVITAGGTKVSINEYRLA 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           + ++L ++SQ+ G  ++ E+A+++G+D ++L  LVSGA LD+    +GL     R+    
Sbjct: 61  YDRQLAVMSQQFGQRLSHEQAKALGVDNQVLAQLVSGAVLDEQARKLGLGLSKDRLAELT 120

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F G   +F    F   L + G+  ++Y+ +  ++  R  +V     G++  +   
Sbjct: 121 REDPAFKGPGGQFDRRTFEYMLQQIGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDTFF 180

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                +  E+R++DY+ L    V  IA PS++VL+ +FE  K  Y APEY++ SY+  + 
Sbjct: 181 KAVALYRGEDRTIDYLTLPKALVEPIAAPSDSVLSAYFEANKKTYAAPEYRKFSYVRLEP 240

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +      +++ ++  +Y KNK +Y +PE+RT+EQLVF     A  A  SLK G  F +L
Sbjct: 241 VDIMDPTAVTDQQVSDDYNKNKARYTTPELRTIEQLVFKTPDAAKAALDSLKAGATFDKL 300

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
              +GK+ +D  LG+ +K+ I D ++AD+ F+L    + + V+ G+FG V+  V+ IKP 
Sbjct: 301 VTAEGKTPADTLLGTLAKDKIADKAVADAAFAL-NANEVSQVVQGAFGPVLLRVTEIKPE 359

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
                 EV   I   + + +AS  + +     ++  A G+S+ + + + K+  + +  +D
Sbjct: 360 VVKPLAEVSDQIRKDLALGEASRILLDVRDNYDDTRAAGSSLADAAAKLKLKVVTIDAID 419

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
            +G       V  +P   +L+  VF  + P +++  +   D  +++ ++    PARDR L
Sbjct: 420 RSGLRPDASIVKDLPQSPELIKAVFDAE-PNTENDALTTADNGFVFYEVASITPARDRTL 478

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           +EV   V  DW   +T++ +++KA++L  +  K G     I   L     T   + R + 
Sbjct: 479 DEVRQKVVADWTAAETSKRLAAKADEL-EKRLKAGATLDVIASELKLEKQTKRGVKR-EA 536

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK----DKFISYLT 595
           ++  FG +G + +F          P   G   +++KV         +     D      T
Sbjct: 537 DDVDFGKEGAAAMFGVGEGGTGLIPSPTGDGQILYKVAEVFEPAGADASSVPDDAQKSFT 596

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
             M+ DLLD ++A L++QY V V    + + 
Sbjct: 597 SGMSDDLLDQLVAQLQTQYDVRVDQAAVAQA 627


>gi|154248299|ref|YP_001419257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter
           autotrophicus Py2]
 gi|154162384|gb|ABS69600.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter
           autotrophicus Py2]
          Length = 630

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 163/630 (25%), Positives = 302/630 (47%), Gaps = 8/630 (1%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ +RK +  W+AKIFLV+L + FL+WG++D +F   G+++V SVG  ++   +F   + 
Sbjct: 3   LQTLRKGASGWIAKIFLVILTLSFLVWGIAD-VFRGMGATSVASVGATEISADAFRRQYL 61

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            +L  IS++ G  ++ ++AR+ GLD++IL+ +++ ATLD+    + L     ++  EIA 
Sbjct: 62  DQLQQISRRAGRPISPDQARAFGLDRQILNQMIADATLDEQASRLALAVSDEQIAREIAD 121

Query: 122 SPLFHGKD-NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           +P +       F    F   L    + E+ ++    +   R  ++     G+    +L+D
Sbjct: 122 NPNYRRPGATSFDPAYFQQLLRSNNLTEQRFVASERQRAVRDQLLKSLGAGVAVPQVLID 181

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              RF  E R+  Y+ +       +A P++ VL  +F+ +K  +RAPEY++IS +     
Sbjct: 182 AVGRFENETRTASYVRVTPAAAGPLAAPTDEVLRAYFDAHKVTFRAPEYRKISVLALTPA 241

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  ++  + +A+YE+N  ++ +PE R V+Q+VF +  +A  A + +K G  F  +A
Sbjct: 242 TLAAAETVTEADAKADYERNLSRFGTPERREVQQIVFTSAADALAADEKIKAGASFADIA 301

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
             +G +  D  LG  +K  I D  +AD+ FS+ + G  + V  G FG V+ HV+ ++P  
Sbjct: 302 AARGLTAKDTDLGLVAKSAILDPKIADAAFSMPE-GAVSAV-EGRFGTVLVHVTKVEPGA 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
              F+ VK  I+  +R+ +A   + + + ++E+  A G+++ E++++  +       VD 
Sbjct: 360 RQPFEAVKDQISADLRLDRARRALLDKHDQVEDERASGSTLAEVAQKLGLRLQTFDAVDR 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           +G    G   A +P    +L   F     +  D      +G ++W +     PARDR  +
Sbjct: 420 SGHTPSGDP-ADVPGGADVLSGAFAAQPGVETDTVQLPQNGGFVWYETNAITPARDRTFD 478

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           E  + V   W   +T + V +KA  L L+ +K G     +       L     + R    
Sbjct: 479 EAKSAVTARWTESETEKAVEAKATAL-LDKAKAGTPLAQVAAEADLPLQIAEGLRR-GRA 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY-LTQMMN 599
              F  + I+ VF                  VVF+VT   V P        S  L++ + 
Sbjct: 537 AGPFSAESIASVFDVKEGGFGIALAATEPDRVVFEVTKIMVPPPDMDTSRASAELSRQIE 596

Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
            D+L   ++ ++ +  V ++D L  +    
Sbjct: 597 NDVLLQYLSAIQKEIGVKINDKLFAQATGA 626


>gi|254503805|ref|ZP_05115956.1| hypothetical protein SADFL11_3844 [Labrenzia alexandrii DFL-11]
 gi|222439876|gb|EEE46555.1| hypothetical protein SADFL11_3844 [Labrenzia alexandrii DFL-11]
          Length = 635

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 165/628 (26%), Positives = 294/628 (46%), Gaps = 10/628 (1%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           +RK + TW+AK+F+ +L   F IWG++D L    G +TV  VG ++V    F   ++Q+L
Sbjct: 1   MRKGAGTWIAKLFIALLIFSFAIWGVTDFLQGY-GQNTVAKVGEKEVSLLEFDRMYRQDL 59

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             + Q+ G  +  +   S+G+ ++ L  L+  A +    +++ +     R+   I   P 
Sbjct: 60  NRLGQQFGRPLTPQEGASLGIPQQALARLIGQAAMSNAAQELKVGISDDRLGAIIQSDPA 119

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F G   ++        L      E EY+    +   R  V+   +GGM      L     
Sbjct: 120 FQGASGRYDRSRLQQVLNANDYREDEYVVLRRQEAERGQVIEGLIGGMSAPQAYLAAFDA 179

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
           F  E RSV+Y+ +    +  I DP+   L  +++  K ++RAPEY+ I Y+        +
Sbjct: 180 FQNETRSVEYVAIAAEQIGDIEDPAEDTLVTYYDGKKADFRAPEYREIRYVELVPSALAR 239

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
             +I++ + ++EY++    +  PE R V QL F + ++A  A Q+L  GK F  L  ++ 
Sbjct: 240 PEDITDADARSEYDRRISDFAEPERRRVRQLSFNSDEDAQAAAQALAGGKTFADLMADRN 299

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            + +D++LG  S+    D ++ D+ F+L+  GD + V+ G F  VI +V  I P+ T  F
Sbjct: 300 LTNNDVTLGVMSRADFLDDAIGDAAFTLS-AGDTSDVVEGRFSNVIVNVEEIIPANTTPF 358

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
            +V+ +I  ++ + +A  ++ +    +E+  A G  +DEI  R  +        D  GK 
Sbjct: 359 ADVRDEIVEELALEQAEREILDLLDEVEDARAGGALLDEIGERFSLAVKSTGSFDRDGKT 418

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
               + A +P  E L+   F  D  +  D  + + +  Y+W  +    P RDR L+EV  
Sbjct: 419 TIETD-AILPDAEGLIAGAFDSDIGIEND-VLQIGNRGYLWYDVTSVTPERDRDLDEVRD 476

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
            V   WK+ +  E +S KA  L+ + ++ G +  D+    G S+ T   + R        
Sbjct: 477 QVIAAWKSDQLNERLSQKATDLLAK-AESGTSLGDLAAAEGVSVQTAEGVTR-SMPTGDL 534

Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV----GPVQEKDKFISYLTQMMNK 600
           G D ++ +F GP   V      +G   VV KVT S++        E       L+Q +  
Sbjct: 535 GSDALTAIFEGPAGSVATAESADGNGRVVLKVTGSEIPEFSPETSEVTALEGQLSQQVQN 594

Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
            LLD  +A  +++  V ++   + + + 
Sbjct: 595 SLLDLFVAEQETRAGVEINSAAVAQVMG 622


>gi|254469828|ref|ZP_05083233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp.
           JE062]
 gi|211961663|gb|EEA96858.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp.
           JE062]
          Length = 628

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 165/632 (26%), Positives = 309/632 (48%), Gaps = 12/632 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R +  +W AKI + +L + F +WG++D +F+  GS++V SVG +++    F  ++
Sbjct: 1   MLDALRNSVGSWFAKILIGLLVLSFAVWGIAD-VFTGIGSTSVASVGDKEISAQDFQRAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +EL  +S+++G  V  E+A + G+  ++L  LV+ A LD     + +      +   I 
Sbjct: 60  SRELDQLSRRVGQPVTQEQAAAFGVPAQVLGRLVAEAALDNEASKLRIGVSDEAIIKTIQ 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P F G +  +  +     L   G++E E++     +  R  +    +GG+     +L+
Sbjct: 120 ETPAFQGVNG-YDRNRLGQVLYNLGMSEDEFVMQQQLVAERQQLAEAVIGGIVVPETMLE 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              ++  E R+V+Y+VL    +  +  P++  L  +FE+ K NY+APEY+  + I     
Sbjct: 179 AFDKYAMEERTVEYLVLPKSSLTDVPAPTDEELNAFFEENKGNYKAPEYRSATIIELTSD 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +  K   ++++E+  EYE+ K +Y S E R + Q+ FP ++EA+ A   +  GK F  L 
Sbjct: 239 KIAKPENVTDEEIAQEYERTKNRYQSQEQRRIYQISFPTKQEAEAAVVEMDSGKTFEDLM 298

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E+  +  D+ LG  +K    D  +AD+ F+L ++G  + V+ G F   I     +KP+ 
Sbjct: 299 NERDLTEKDVDLGLMNKAGFLDQKIADAAFAL-QEGQASNVVEGQFTNAILFAKEVKPAA 357

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
               ++VK ++   +    A+++V++ +  +E+  A G++ +EI+ R  +  I+ P  D 
Sbjct: 358 VQPLEDVKDELRTVVAQANAADEVEDLFNEVEDARAGGSTFEEIAERFDLELINTPAFDA 417

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           +G +  G+ V  +P   +L   VF  D  +  D  + +    ++W ++KE  P+RDR+L 
Sbjct: 418 SGNNEAGETV-ELPIANELTTAVFSTDVGVEND-PLEIGRTGHLWYEVKEVTPSRDRELS 475

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V  DW   +T E +  KA  L+ E  + GK+  +I    G +  T+    R    
Sbjct: 476 EVKEAVTADWTANRTGELLEEKAKTLIAE-VEAGKSLSEIAAAEGLTTTTSQPFTRNGGV 534

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
               G   I+  FSGP       P  N    ++  +T++         +   +  + LT 
Sbjct: 535 QGLSGSA-ITAAFSGPKGTAAQVPGNNED-RILLVLTDTTAPAFMTESENAQRINTQLTG 592

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
            +   LL+  I  L+    V V+  +  +   
Sbjct: 593 ALESSLLNQFINQLEQTEGVLVNQAVFNQLTG 624


>gi|218549891|ref|YP_002383682.1| peptidyl-prolyl cis-trans isomerase [Escherichia fergusonii ATCC
           35469]
 gi|218357432|emb|CAQ90071.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia
           fergusonii ATCC 35469]
          Length = 638

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 273/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 16  MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAF 74

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  D+ L     +V  
Sbjct: 75  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQ 134

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  + + L + G++  +Y       L+   ++    G       
Sbjct: 135 AIFATPAFQ-VDGKFDNSRYNAILNQMGMSADQYAQALRNQLTTQQLINGIAGTDFMLKG 193

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++          S+A +T +++++K+N+  PE  R+SYI+ 
Sbjct: 194 ETDELAALVSQQRVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRVSYIML 253

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++QA Y+++++++  P+      +    + EA     +L  G  F 
Sbjct: 254 DAANI--QQPVSDADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNGGDFA 311

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +LA+E+   +    +   LG       P   L D+   L  KG  + VI  S G+++  +
Sbjct: 312 ELAKEKSADIISARNGGDLGWLEDSTTP-QELKDA--GLKDKGQLSGVIKSSVGFLVVRL 368

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P+   +  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 369 DDVQPAKVKTLAEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 426

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  +    +E+   P  + +    + G++     +  +   DG   +V ++ E 
Sbjct: 427 KAKETGWFSQQNLPEELNFKPVADAIFSGSLVGENGTPGSNSDIITVDGDRAFVLRVSEH 486

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                + L EV   VK   +  K  ++   +A +L++E  K GK   D  +  G      
Sbjct: 487 KAEAIKPLSEVKDQVKALVQHDKAEQQAKLEAEKLLVEL-KAGKGV-DAMRAAGLQFGEQ 544

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +      + V+  +   K G  P  +K
Sbjct: 545 KTLSRSGQD----PVSLAAFALGLPEKDKPSYGMATNTQGNVVLLALDEVKAGTMPEAQK 600

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 601 QALVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 638


>gi|187732708|ref|YP_001879152.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella boydii
           CDC 3083-94]
 gi|187429700|gb|ACD08974.1| peptidylprolyl isomerase [Shigella boydii CDC 3083-94]
          Length = 623

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 267/638 (41%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G     + +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIHPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG     ++I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|300924168|ref|ZP_07140160.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
 gi|301049648|ref|ZP_07196597.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
 gi|300298585|gb|EFJ54970.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
 gi|300419621|gb|EFK02932.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
          Length = 623

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 124/636 (19%), Positives = 271/636 (42%), Gaps = 24/636 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSN 355
            LA+E+   +     G     ++ D ++ D +    L +KG  + VI  S G++I  + +
Sbjct: 297 ALAKEKSADIISARNGG-GMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDD 355

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +  
Sbjct: 356 IQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVKA 413

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIP 473
               +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E  P
Sbjct: 414 TQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKP 473

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
              + L +V   VK   +  K  ++    A +L+++  K GK    + +  G        
Sbjct: 474 EAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKT 531

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDK 589
           ++R   +         +     P +    + +   +  + V+  +   K G  P  +K  
Sbjct: 532 LSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKA 587

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 588 MVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|218675330|ref|ZP_03524999.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli GR56]
          Length = 579

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 191/566 (33%), Positives = 326/566 (57%), Gaps = 3/566 (0%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   +R+A++TWVAK+ L++L   F +WG+S  L S   S+TVV+VG Q+V  + F  ++
Sbjct: 17  MFHFLRRAAQTWVAKLLLLLLVASFGVWGVSRELISGGNSTTVVTVGDQRVGVNEFHLAY 76

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  + Q+ G  +  E+AR+ G+++++L  L++GA+LDQ   D+ L     R+   I 
Sbjct: 77  QRQVASLGQQFGMRLTPEQARAFGVEQQVLSQLIAGASLDQLAADMNLGLSEDRLAQLIG 136

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F  ++FVSRL    I++ +YI   +K+  R+ +V     G      L+D
Sbjct: 137 DDPAFKAVNGQFDRELFVSRLRNANIHQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 196

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             K +  E+R+VDY++L N ++  I  P++ VL  WFE  K  YRAPEY++I+Y+     
Sbjct: 197 AMKLYGDESRAVDYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKIAYLKLQPA 256

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +++D+++  ++K K+ Y +PE RT+EQL F ++  A  A  +LK G  F QL 
Sbjct: 257 DIADVASVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLV 316

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G  TPV+ GSFG VI  ++NIK   
Sbjct: 317 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKAET 376

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             +F EVK++I  Q+ ++ AS++V   + ++E+  A G ++++I+ + K+ ++ +  VD 
Sbjct: 377 VKNFDEVKEEIRKQLALSNASQEVINVHDQIEDLRAGGATLEDIAAQLKLKAMTVDAVDA 436

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  GKEV   P K+QLL   F  +  +     + + +  Y+W  ++E  P RDR + 
Sbjct: 437 TGADKDGKEVKDTPVKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPIA 495

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV     +DW   +   E++ KA++L  E  K G    DI   LG ++ + + I R   +
Sbjct: 496 EVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIAAPLGIAVESKSSITR-STD 553

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIE 566
           +   G  G+   FSGPV+ V      
Sbjct: 554 DAVLGRAGVKAAFSGPVDTVASAVGA 579


>gi|82775652|ref|YP_401999.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella
           dysenteriae Sd197]
 gi|81239800|gb|ABB60510.1| putative protease maturation protein [Shigella dysenteriae Sd197]
          Length = 623

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDNLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA ++R  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVRHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|215485522|ref|YP_002327953.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215263594|emb|CAS07924.1| peptidyl-prolyl cis-trans isomerase D (rotamase D) [Escherichia
           coli O127:H6 str. E2348/69]
          Length = 623

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKNLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|300903291|ref|ZP_07121219.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
 gi|301301592|ref|ZP_07207727.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
 gi|300404586|gb|EFJ88124.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
 gi|300843089|gb|EFK70849.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
 gi|315256269|gb|EFU36237.1| PPIC-type PPIASE domain protein [Escherichia coli MS 85-1]
          Length = 623

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQTAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|157159968|ref|YP_001457286.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           HS]
 gi|312970538|ref|ZP_07784719.1| PPIC-type PPIASE domain protein [Escherichia coli 1827-70]
 gi|157065648|gb|ABV04903.1| peptidylprolyl isomerase [Escherichia coli HS]
 gi|310337187|gb|EFQ02325.1| PPIC-type PPIASE domain protein [Escherichia coli 1827-70]
          Length = 623

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  QK+    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQKISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|283784267|ref|YP_003364132.1| peptidyl-prolyl cis-trans isomerase D [Citrobacter rodentium
           ICC168]
 gi|282947721|emb|CBG87276.1| peptidyl-prolyl cis-trans isomerase D [Citrobacter rodentium
           ICC168]
          Length = 624

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 280/638 (43%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G     + +       L ++ L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NGERNRMQQQLGDQYSELAANEGYMKTLRQQTLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFSTPAFQ-VDGKFDNNHYNALVIQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++ + + A    +   +  ++E++K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVREATIDVQALAAKQQATEQEVASYYEQHKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    +K   +++ ++Q+ Y+++++++  P+      +    + EA     +L KG  F 
Sbjct: 239 DAAAMQKP--VTDADVQSYYDQHQDEFTQPQRSRYSIIQTKTEDEAKAVLDALNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +  +PD         L +KG  + VI  S G++IA +
Sbjct: 297 TLAKEKSADIISACNGGDMGWLEEATMPD---ELKNAGLKEKGQLSGVIKSSVGFLIARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P+      EV  DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDVQPAKVKPLSEVHDDIAAKVKQEKALDAFFALQQKVSD--AANNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  +D   +E+   P  + +    + G++    ++  +   DG  ++V +I E 
Sbjct: 412 KAVETGWFSRDSLPEELNFKPVSDAIFDGSLVGENGTPGRNSDIITVDGDRVFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                + L +V   V +  K  K A++    A +L++E  K GK    + K  G S    
Sbjct: 472 KAEAVKPLADVKDQVTERVKYDKAAQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGAQ 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R + +         +   S P +    + + N +  + VV  +   K G  P  +K
Sbjct: 530 KTLSRTNQD----PVSQAAFALSLPAKDKPGYGMANDMQGNVVVLALDEVKAGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D + Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDAMEQQ 623


>gi|194435312|ref|ZP_03067524.1| peptidylprolyl isomerase [Shigella dysenteriae 1012]
 gi|194416444|gb|EDX32601.1| peptidylprolyl isomerase [Shigella dysenteriae 1012]
 gi|332085739|gb|EGI90903.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 155-74]
          Length = 623

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 121/634 (19%), Positives = 261/634 (41%), Gaps = 20/634 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G     + +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFAIPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDGLNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG     ++I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QVAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
             ++R   +        +               ++  +  +V         P  +K   +
Sbjct: 530 KTLSRSGRDPISQAAFALPLPAKDKPNYGMATDMQGNVVLLVLDEVKQGSMPEDQKKAMV 589

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 590 QGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|16128426|ref|NP_414975.1| periplasmic folding chaperone, has an inactive PPIase domain
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26246452|ref|NP_752491.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           CFT073]
 gi|74311016|ref|YP_309435.1| peptidyl-prolyl cis-trans isomerase [Shigella sonnei Ss046]
 gi|82542929|ref|YP_406876.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella boydii
           Sb227]
 gi|89107311|ref|AP_001091.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K-12
           substr. W3110]
 gi|91209515|ref|YP_539501.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli UTI89]
 gi|110640702|ref|YP_668430.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           536]
 gi|117622701|ref|YP_851614.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           APEC O1]
 gi|170021186|ref|YP_001726140.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           ATCC 8739]
 gi|170080027|ref|YP_001729347.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188496348|ref|ZP_03003618.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 53638]
 gi|191173673|ref|ZP_03035197.1| peptidylprolyl isomerase [Escherichia coli F11]
 gi|193067528|ref|ZP_03048495.1| peptidylprolyl isomerase [Escherichia coli E110019]
 gi|218557351|ref|YP_002390264.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           S88]
 gi|218688305|ref|YP_002396517.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ED1a]
 gi|218703725|ref|YP_002411244.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli UMN026]
 gi|227884548|ref|ZP_04002353.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           83972]
 gi|237707564|ref|ZP_04538045.1| peptidyl-prolyl cis-trans isomerase [Escherichia sp. 3_2_53FAA]
 gi|238899729|ref|YP_002925525.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           BW2952]
 gi|256023940|ref|ZP_05437805.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia sp.
           4_1_40B]
 gi|293403562|ref|ZP_06647653.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli FVEC1412]
 gi|293408591|ref|ZP_06652430.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298379174|ref|ZP_06989055.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli FVEC1302]
 gi|300900512|ref|ZP_07118679.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
 gi|300918176|ref|ZP_07134783.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
 gi|300947906|ref|ZP_07162054.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
 gi|300958009|ref|ZP_07170173.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
 gi|300988004|ref|ZP_07178484.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
 gi|301025663|ref|ZP_07189181.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
 gi|301330692|ref|ZP_07223294.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
 gi|301647367|ref|ZP_07247179.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
 gi|306813091|ref|ZP_07447284.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           NC101]
 gi|307137086|ref|ZP_07496442.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           H736]
 gi|307312181|ref|ZP_07591817.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W]
 gi|309794826|ref|ZP_07689247.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
 gi|312964534|ref|ZP_07778790.1| PPIC-type PPIASE domain protein [Escherichia coli 2362-75]
 gi|331640961|ref|ZP_08342096.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H736]
 gi|331651379|ref|ZP_08352404.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli M718]
 gi|331656498|ref|ZP_08357460.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA206]
 gi|331661822|ref|ZP_08362745.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA143]
 gi|331681836|ref|ZP_08382469.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H299]
 gi|83288412|sp|P0ADY2|PPID_ECOL6 RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
 gi|83288413|sp|P0ADY1|PPID_ECOLI RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
 gi|26106850|gb|AAN79035.1|AE016756_218 Peptidyl-prolyl cis-trans isomerase D [Escherichia coli CFT073]
 gi|1580712|dbj|BAA11645.1| YbaU [Escherichia coli W3110]
 gi|1773125|gb|AAB40197.1| similar to H. influenzae HI1004 [Escherichia coli]
 gi|1786645|gb|AAC73544.1| periplasmic folding chaperone, has an inactive PPIase domain
           [Escherichia coli str. K-12 substr. MG1655]
 gi|73854493|gb|AAZ87200.1| putative protease maturation protein [Shigella sonnei Ss046]
 gi|76365131|gb|ABA42059.1| peptidyl-prolyl isomerase [Escherichia coli]
 gi|81244340|gb|ABB65048.1| putative protease maturation protein [Shigella boydii Sb227]
 gi|85674581|dbj|BAE76221.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K12
           substr. W3110]
 gi|91071089|gb|ABE05970.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli UTI89]
 gi|110342294|gb|ABG68531.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 536]
 gi|115511825|gb|ABI99899.1| peptidyl-prolyl isomerase [Escherichia coli APEC O1]
 gi|169756114|gb|ACA78813.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           ATCC 8739]
 gi|169887862|gb|ACB01569.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188491547|gb|EDU66650.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 53638]
 gi|190906031|gb|EDV65646.1| peptidylprolyl isomerase [Escherichia coli F11]
 gi|192958940|gb|EDV89376.1| peptidylprolyl isomerase [Escherichia coli E110019]
 gi|218364120|emb|CAR01785.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           S88]
 gi|218425869|emb|CAR06675.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           ED1a]
 gi|218430822|emb|CAR11696.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           UMN026]
 gi|222032236|emb|CAP74975.1| Peptidyl-prolyl cis-trans isomerase D [Escherichia coli LF82]
 gi|226898774|gb|EEH85033.1| peptidyl-prolyl cis-trans isomerase [Escherichia sp. 3_2_53FAA]
 gi|227838634|gb|EEJ49100.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           83972]
 gi|238861991|gb|ACR63989.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           BW2952]
 gi|260450372|gb|ACX40794.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           DH1]
 gi|291429415|gb|EFF02435.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli FVEC1412]
 gi|291471769|gb|EFF14252.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294490510|gb|ADE89266.1| peptidylprolyl isomerase [Escherichia coli IHE3034]
 gi|298280287|gb|EFI21791.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli FVEC1302]
 gi|299880017|gb|EFI88228.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
 gi|300315276|gb|EFJ65060.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
 gi|300355993|gb|EFJ71863.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
 gi|300407556|gb|EFJ91094.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
 gi|300414627|gb|EFJ97937.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
 gi|300452506|gb|EFK16126.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
 gi|300843353|gb|EFK71113.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
 gi|301074512|gb|EFK89318.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
 gi|305853854|gb|EFM54293.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           NC101]
 gi|306907683|gb|EFN38185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W]
 gi|307552348|gb|ADN45123.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ABU 83972]
 gi|307628089|gb|ADN72393.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           UM146]
 gi|308121479|gb|EFO58741.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
 gi|309700702|emb|CBI99998.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ETEC
           H10407]
 gi|312290768|gb|EFR18645.1| PPIC-type PPIASE domain protein [Escherichia coli 2362-75]
 gi|312945019|gb|ADR25846.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315059721|gb|ADT74048.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           W]
 gi|315135123|dbj|BAJ42282.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli DH1]
 gi|315289841|gb|EFU49231.1| PPIC-type PPIASE domain protein [Escherichia coli MS 110-3]
 gi|315294225|gb|EFU53576.1| PPIC-type PPIASE domain protein [Escherichia coli MS 153-1]
 gi|315299565|gb|EFU58813.1| PPIC-type PPIASE domain protein [Escherichia coli MS 16-3]
 gi|315616618|gb|EFU97235.1| PPIC-type PPIASE domain protein [Escherichia coli 3431]
 gi|320186071|gb|EFW60816.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella flexneri CDC
           796-83]
 gi|320197085|gb|EFW71704.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli
           WV_060327]
 gi|323164242|gb|EFZ50049.1| PPIC-type PPIASE domain protein [Shigella sonnei 53G]
 gi|323379714|gb|ADX51982.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           KO11]
 gi|323938627|gb|EGB34876.1| ppic-type ppiase domain-containing protein [Escherichia coli E1520]
 gi|323943248|gb|EGB39404.1| ppic-type ppiase domain-containing protein [Escherichia coli E482]
 gi|323952947|gb|EGB48815.1| ppic-type ppiase domain-containing protein [Escherichia coli H252]
 gi|323958634|gb|EGB54337.1| ppic-type ppiase domain-containing protein [Escherichia coli H263]
 gi|324010072|gb|EGB79291.1| PPIC-type PPIASE domain protein [Escherichia coli MS 57-2]
 gi|324010655|gb|EGB79874.1| PPIC-type PPIASE domain protein [Escherichia coli MS 60-1]
 gi|324116929|gb|EGC10842.1| ppic-type ppiase domain-containing protein [Escherichia coli E1167]
 gi|331037759|gb|EGI09979.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H736]
 gi|331051120|gb|EGI23172.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli M718]
 gi|331054746|gb|EGI26755.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA206]
 gi|331060244|gb|EGI32208.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA143]
 gi|331081038|gb|EGI52203.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H299]
          Length = 623

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|323191361|gb|EFZ76624.1| PPIC-type PPIASE domain protein [Escherichia coli RN587/1]
          Length = 623

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGLMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|300997370|ref|ZP_07181710.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
 gi|300304189|gb|EFJ58709.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
          Length = 623

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWVEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|332341805|gb|AEE55139.1| peptidyl-prolyl cis-trans isomerase PpiD [Escherichia coli UMNK88]
          Length = 623

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/638 (19%), Positives = 270/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P ++K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEEQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|256020413|ref|ZP_05434278.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella sp. D9]
 gi|332281592|ref|ZP_08394005.1| conserved hypothetical protein [Shigella sp. D9]
 gi|320201685|gb|EFW76261.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli EC4100B]
 gi|332103944|gb|EGJ07290.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 623

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAQQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|218693904|ref|YP_002401571.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           55989]
 gi|218350636|emb|CAU96328.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           55989]
          Length = 623

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 270/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L S  G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIS-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAQQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|320178277|gb|EFW53251.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella boydii ATCC
           9905]
          Length = 623

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QVAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPNYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|85716537|ref|ZP_01047508.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp.
           Nb-311A]
 gi|85696726|gb|EAQ34613.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp.
           Nb-311A]
          Length = 582

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 156/587 (26%), Positives = 289/587 (49%), Gaps = 5/587 (0%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
             I + +L V F IWG++D +F   G S + +VG  ++    F   +   L  I ++ G 
Sbjct: 1   MTIVMGLLIVAFGIWGIAD-IFQGFGQSALATVGNTEISTEQFRQIYTDRLQQIGRQFGR 59

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  ++ R++G+D++IL  +++ A LD+     GLE     +  +I   P F G +  F 
Sbjct: 60  TLPPDQVRALGIDRQILQQVIAEAALDEDARRKGLEVSDKEISRQIMSDPNFKGANGAFD 119

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
              F   + + G  E+ Y+     +  R  +VG    G+ PS  LL+   RF  E R++D
Sbjct: 120 PARFAGLIRQLGYTEQRYVTEQRNLALRRQIVGTVTAGVEPSTKLLEALNRFQNEQRTID 179

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
           Y+ L      +I  P+ A L+ +F+ +K  +RAPEY++I++++    E  K   +S+D+ 
Sbjct: 180 YVKLGAAQAGSIDPPTEAQLSGYFDAHKVQFRAPEYRKIAFVVLTPEEVAKWTTVSDDDA 239

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
           +  YE+ K+K  +PE R + Q++FP+  +A  A + +  G  F  +A+E+  + SDI LG
Sbjct: 240 KKVYEQRKDKLSTPERRKIWQIIFPSVADAQAAREKIASGASFDDIAKERNLATSDIDLG 299

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           + S+  I D ++A++ FSL K  D +  I G FG  +  VS I+P    ++  V   + +
Sbjct: 300 TISRPEIVDPAVAEAAFSL-KTDDVSQPIQGKFGVALVKVSKIEPGNQPTYDSVATKLKH 358

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
            + + +   +V   + ++E+    G S+ E +++  + ++ +   D +G+   GK V  I
Sbjct: 359 DIAVDRGRAEVNNLHNKMEDERGGGASVVEAAKKVGLSAVTIEATDRSGRAPDGKPVTEI 418

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
           P    L+ + F  D  +  D T+ L +  ++W  +    P+RDR L EV   V+  W+  
Sbjct: 419 PQGVDLIAQAFASDVGVDND-TLQLGNNGFVWFDVLGVTPSRDRTLAEVKDKVEAGWRKD 477

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
           + +  + +KA  +V    + GK   +   +LG  + + + I R D          ++ VF
Sbjct: 478 QISGRLMTKATDIVRNLEQGGK-IAEESSSLGLKVESASAIKR-DATTGELPAAVVAAVF 535

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
                     P  +   + VF+VT+ KV P+      +  L + + +
Sbjct: 536 RVVKGAAGQAPGADNDEWFVFRVTDVKVPPLDLASDEMKKLREGIQR 582


>gi|293413696|ref|ZP_06656345.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B185]
 gi|291433754|gb|EFF06727.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B185]
          Length = 623

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRARYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKQKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|331645617|ref|ZP_08346721.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli M605]
 gi|331045779|gb|EGI17905.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli M605]
          Length = 623

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 270/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         + V   P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFVLPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|170681699|ref|YP_001742585.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           SMS-3-5]
 gi|218698647|ref|YP_002406276.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli IAI39]
 gi|300937058|ref|ZP_07151924.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
 gi|301022565|ref|ZP_07186437.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
 gi|170519417|gb|ACB17595.1| peptidylprolyl isomerase [Escherichia coli SMS-3-5]
 gi|218368633|emb|CAR16372.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           IAI39]
 gi|284920251|emb|CBG33310.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 042]
 gi|300397446|gb|EFJ80984.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
 gi|300457889|gb|EFK21382.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
 gi|323170528|gb|EFZ56178.1| PPIC-type PPIASE domain protein [Escherichia coli LT-68]
 gi|323965128|gb|EGB60587.1| ppic-type ppiase domain-containing protein [Escherichia coli M863]
 gi|327254769|gb|EGE66385.1| PPIC-type PPIASE domain protein [Escherichia coli STEC_7v]
          Length = 623

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ D+A +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|209917658|ref|YP_002291742.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           SE11]
 gi|218553008|ref|YP_002385921.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli IAI1]
 gi|293418512|ref|ZP_06660947.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B088]
 gi|300818227|ref|ZP_07098438.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
 gi|209910917|dbj|BAG75991.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE11]
 gi|218359776|emb|CAQ97317.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           IAI1]
 gi|291325040|gb|EFE64455.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B088]
 gi|300529118|gb|EFK50180.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
 gi|323184728|gb|EFZ70099.1| PPIC-type PPIASE domain protein [Escherichia coli 1357]
 gi|323945347|gb|EGB41403.1| ppic-type ppiase domain-containing protein [Escherichia coli H120]
 gi|324016698|gb|EGB85917.1| PPIC-type PPIASE domain protein [Escherichia coli MS 117-3]
          Length = 623

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KILSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|323976074|gb|EGB71167.1| ppic-type ppiase domain-containing protein [Escherichia coli
           TW10509]
          Length = 623

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 270/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ D+A +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P ++K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEEQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|24111825|ref|NP_706335.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella flexneri
           2a str. 301]
 gi|30061943|ref|NP_836114.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella flexneri
           2a str. 2457T]
 gi|24050617|gb|AAN42042.1| putative protease maturation protein [Shigella flexneri 2a str.
           301]
 gi|30040187|gb|AAP15920.1| putative protease maturation protein [Shigella flexneri 2a str.
           2457T]
 gi|281599781|gb|ADA72765.1| putative protease maturation protein [Shigella flexneri 2002017]
 gi|332760732|gb|EGJ91020.1| PPIC-type PPIASE domain protein [Shigella flexneri 4343-70]
 gi|332761539|gb|EGJ91821.1| PPIC-type PPIASE domain protein [Shigella flexneri 2747-71]
 gi|332768363|gb|EGJ98547.1| PPIC-type PPIASE domain protein [Shigella flexneri 2930-71]
 gi|333008057|gb|EGK27533.1| PPIC-type PPIASE domain protein [Shigella flexneri K-218]
 gi|333021934|gb|EGK41182.1| PPIC-type PPIASE domain protein [Shigella flexneri K-304]
          Length = 623

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 123/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                  +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 VAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V ++ E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVLRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|323963431|gb|EGB58993.1| ppic-type ppiase domain-containing protein [Escherichia coli H489]
          Length = 623

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 123/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +     ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNNAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + ++  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVILLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|331671987|ref|ZP_08372783.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA280]
 gi|320173739|gb|EFW48922.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella dysenteriae CDC
           74-1112]
 gi|331070976|gb|EGI42335.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA280]
          Length = 623

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 130/641 (20%), Positives = 272/641 (42%), Gaps = 34/641 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSG---PVEMVKCFPIENGL--SYVVFKVTNSKVG--PV 584
             ++R        G D ISQ       P +    + +   +  + V+  +   K G  P 
Sbjct: 530 KTLSRS-------GRDLISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPE 582

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 583 DQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|157156448|ref|YP_001461628.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           E24377A]
 gi|157078478|gb|ABV18186.1| peptidylprolyl isomerase [Escherichia coli E24377A]
          Length = 623

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K    P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQASMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|194437396|ref|ZP_03069493.1| peptidylprolyl isomerase [Escherichia coli 101-1]
 gi|253774568|ref|YP_003037399.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160511|ref|YP_003043619.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           B str. REL606]
 gi|194423565|gb|EDX39555.1| peptidylprolyl isomerase [Escherichia coli 101-1]
 gi|242376223|emb|CAQ30914.1| periplasmic folding helper protein [Escherichia coli BL21(DE3)]
 gi|253325612|gb|ACT30214.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972412|gb|ACT38083.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           B str. REL606]
 gi|253976622|gb|ACT42292.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           BL21(DE3)]
 gi|323972295|gb|EGB67505.1| ppic-type ppiase domain-containing protein [Escherichia coli TA007]
          Length = 623

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +     ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNNAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|281177612|dbj|BAI53942.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE15]
          Length = 623

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|300930256|ref|ZP_07145669.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
 gi|300461828|gb|EFK25321.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
          Length = 623

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +     ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKTLVQHNNAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|333008127|gb|EGK27602.1| PPIC-type PPIASE domain protein [Shigella flexneri VA-6]
          Length = 623

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 123/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                  +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 VAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  +  T  + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNET--ESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V ++ E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVLRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|332094597|gb|EGI99643.1| PPIC-type PPIASE domain protein [Shigella boydii 5216-82]
          Length = 623

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              +      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETGELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QVAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPNYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|260866602|ref|YP_003233004.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str.
           11128]
 gi|257762958|dbj|BAI34453.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str.
           11128]
 gi|323178290|gb|EFZ63868.1| PPIC-type PPIASE domain protein [Escherichia coli 1180]
          Length = 623

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/640 (19%), Positives = 270/640 (42%), Gaps = 32/640 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF + ++   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSLYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKVVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG     ++I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQ 585
             ++R   +            F+   P +    + +   +  + V+  +   K G  P  
Sbjct: 530 KILSRSGRD------PISQAAFTLPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|170749508|ref|YP_001755768.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656030|gb|ACB25085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 633

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 156/639 (24%), Positives = 297/639 (46%), Gaps = 16/639 (2%)

Query: 1   MLEIIRKASRTWVAKI----FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+ IR AS+ W+ KI       +L     I+G+ +  F    S+ V +VG   +     
Sbjct: 1   MLQGIRNASQHWLGKIVLTIIFTLLIAGVGIFGVEE-FFRGGASNKVATVGSTPITAEQV 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ +L     ++   +  ++AR +GLD++++  L++ A LDQ   D+GL      V 
Sbjct: 60  RQAYQNQLQRYQTQLKRPLTPDQARMLGLDRQVMSQLITEAALDQKTHDLGLAVPDASVI 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I     F  +  +F   +F   L R G+NE  ++     +++R  +       +    
Sbjct: 120 KAIHEEKSFQNQQGQFEPQLFYQTLQRAGLNEGLFVREQRSVIARLQLAEAVSSDLHVPL 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            + +   R+  E R+  Y++L       I DP++  L  W+E  K  +RAPE++ ++ ++
Sbjct: 180 AMREAVHRYTTERRAAAYLMLTPSVAGQIPDPTDDELKTWYEANKSGFRAPEFRSVNLLV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KK 295
            +     K   I+  + +A Y  NK++Y +PE RT++Q+VFP+   A+ A +++  G K 
Sbjct: 240 VEPEAMAKPDAITEADARAAYALNKDRYGTPEKRTIQQIVFPDAAAAEAARKAITDGSKT 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  +A E+G    D++LG+ +K  + D ++AD+ F+L + G  +  + G FG V+  V+ 
Sbjct: 300 FDAVAAERGTDEKDLTLGTLTKSELFDKAVADAAFALPEGG-VSQPVQGRFGTVLLRVTK 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+      F+ V+ +I   + + +A + ++     +E+  A    + +I+    +  + +
Sbjct: 359 IEAGTVKPFEAVEGEIRKALALARARDAMETTRDAIEDQRAGAKPLADIAAERGLKIVTV 418

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
             VD  GK   G+ V  IP  E  L  +F  +     +  +    G Y+W  +     A 
Sbjct: 419 KAVDANGKGPDGQRVTDIPDAETTLPALFRAEIG-GDNEPLRTKTGGYVWYDVTGIDAAH 477

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
           D+ L++V   VK  W   + A+ + +K  +LV + +K G+      + +G +L     + 
Sbjct: 478 DKPLDQVKDGVKAGWTATEIAKRLQAKGRELVEKINK-GETMEAAAQEVGVNLQEAQDLA 536

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
           R   ++     D ++ +F+ PV          G S  VFKVT + V            +T
Sbjct: 537 RNQAKD-MLTADVVNLIFATPVGKAGTAAA--GDSRAVFKVTAATVPAFVADSPSDKQIT 593

Query: 596 Q----MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           Q     +  D+L   I+ ++    V V    ++R + GE
Sbjct: 594 QSFQASLADDVLSQYISEVQKNAGVKVDPAALRRAIGGE 632


>gi|260853664|ref|YP_003227555.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str.
           11368]
 gi|257752313|dbj|BAI23815.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str.
           11368]
 gi|323153478|gb|EFZ39732.1| PPIC-type PPIASE domain protein [Escherichia coli EPECa14]
          Length = 623

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKVVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KILSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|300820313|ref|ZP_07100465.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
 gi|331666797|ref|ZP_08367671.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA271]
 gi|331676113|ref|ZP_08376825.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H591]
 gi|300527098|gb|EFK48167.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
 gi|331066021|gb|EGI37905.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA271]
 gi|331076171|gb|EGI47453.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H591]
          Length = 623

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ D+A +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEVVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|291281348|ref|YP_003498166.1| Peptidylprolyl isomerase [Escherichia coli O55:H7 str. CB9615]
 gi|209743820|gb|ACI70217.1| putative protease maturation protein [Escherichia coli]
 gi|290761221|gb|ADD55182.1| Peptidylprolyl isomerase [Escherichia coli O55:H7 str. CB9615]
 gi|320661211|gb|EFX28642.1| periplasmic folding chaperone [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 623

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ +LQ+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADLQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ D+A +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  K+   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKENLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDLAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|15800171|ref|NP_286183.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           O157:H7 EDL933]
 gi|15829749|ref|NP_308522.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           O157:H7 str. Sakai]
 gi|168747883|ref|ZP_02772905.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4113]
 gi|168754546|ref|ZP_02779553.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4401]
 gi|168760404|ref|ZP_02785411.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4501]
 gi|168768396|ref|ZP_02793403.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4486]
 gi|168777137|ref|ZP_02802144.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4196]
 gi|168778934|ref|ZP_02803941.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4076]
 gi|168786292|ref|ZP_02811299.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC869]
 gi|168798005|ref|ZP_02823012.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC508]
 gi|208809217|ref|ZP_03251554.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4206]
 gi|208815330|ref|ZP_03256509.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4045]
 gi|208823220|ref|ZP_03263538.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4042]
 gi|209395856|ref|YP_002269088.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4115]
 gi|217325591|ref|ZP_03441675.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. TW14588]
 gi|254791625|ref|YP_003076462.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
           str. TW14359]
 gi|261223924|ref|ZP_05938205.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261256362|ref|ZP_05948895.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
           str. FRIK966]
 gi|12513303|gb|AAG54791.1|AE005223_6 putative protease maturation protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|13359952|dbj|BAB33918.1| putative protease maturation protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767557|gb|EDU31401.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4196]
 gi|188017729|gb|EDU55851.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4113]
 gi|189002976|gb|EDU71962.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4076]
 gi|189357979|gb|EDU76398.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4401]
 gi|189362425|gb|EDU80844.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4486]
 gi|189369155|gb|EDU87571.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4501]
 gi|189373538|gb|EDU91954.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC869]
 gi|189379237|gb|EDU97653.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC508]
 gi|208729018|gb|EDZ78619.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4206]
 gi|208731978|gb|EDZ80666.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4045]
 gi|208737413|gb|EDZ85097.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4042]
 gi|209157256|gb|ACI34689.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4115]
 gi|209743814|gb|ACI70214.1| putative protease maturation protein [Escherichia coli]
 gi|209743816|gb|ACI70215.1| putative protease maturation protein [Escherichia coli]
 gi|209743818|gb|ACI70216.1| putative protease maturation protein [Escherichia coli]
 gi|209743822|gb|ACI70218.1| putative protease maturation protein [Escherichia coli]
 gi|217321812|gb|EEC30236.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. TW14588]
 gi|254591025|gb|ACT70386.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
           str. TW14359]
 gi|320192857|gb|EFW67497.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7
           str. EC1212]
 gi|320638436|gb|EFX08150.1| periplasmic folding chaperone [Escherichia coli O157:H7 str. G5101]
 gi|320643817|gb|EFX12940.1| periplasmic folding chaperone [Escherichia coli O157:H- str.
           493-89]
 gi|320649168|gb|EFX17746.1| periplasmic folding chaperone [Escherichia coli O157:H- str. H
           2687]
 gi|320656061|gb|EFX23977.1| periplasmic folding chaperone [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320665187|gb|EFX32280.1| periplasmic folding chaperone [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326341205|gb|EGD64997.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7
           str. 1044]
 gi|326346020|gb|EGD69759.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7
           str. 1125]
          Length = 623

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ +LQ+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADLQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ D+A +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  K+   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKENLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|193064188|ref|ZP_03045272.1| peptidylprolyl isomerase [Escherichia coli E22]
 gi|194428997|ref|ZP_03061529.1| peptidylprolyl isomerase [Escherichia coli B171]
 gi|260842642|ref|YP_003220420.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str.
           12009]
 gi|192929217|gb|EDV82827.1| peptidylprolyl isomerase [Escherichia coli E22]
 gi|194412934|gb|EDX29224.1| peptidylprolyl isomerase [Escherichia coli B171]
 gi|257757789|dbj|BAI29286.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str.
           12009]
 gi|323160448|gb|EFZ46396.1| PPIC-type PPIASE domain protein [Escherichia coli E128010]
          Length = 623

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L +G  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNEGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KILSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|110804469|ref|YP_687989.1| peptidyl-prolyl cis-trans isomerase [Shigella flexneri 5 str. 8401]
 gi|110614017|gb|ABF02684.1| putative protease maturation protein [Shigella flexneri 5 str.
           8401]
          Length = 623

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 123/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-IDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                  +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 VAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V ++ E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVLRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KILSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|170767918|ref|ZP_02902371.1| peptidylprolyl isomerase [Escherichia albertii TW07627]
 gi|170123406|gb|EDS92337.1| peptidylprolyl isomerase [Escherichia albertii TW07627]
          Length = 623

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 271/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDRYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  + S L + G++  +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNSILNQMGMSADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQAVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y++++E++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQEQFTQPQRMRYSIIQTKTEDEAKAVLAELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      +PD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATVPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDVQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L++E  K GK    + +         
Sbjct: 472 KPETVKPLADVQEQVKAMVQHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-QAAALKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             +NR   +         +     P +    + +   +  + V+  +   K G  P ++K
Sbjct: 530 KTLNRSGQD----PISQAAFALPLPTQDKPSYGMATDMQGNVVLLALDEVKQGSMPEEQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|330910235|gb|EGH38745.1| peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli AA86]
          Length = 623

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG    VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLAGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLAGENGAPGINSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         + V   P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFVLPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|90419613|ref|ZP_01227523.1| peptidyl-prolyl cis-trans isomerase protein [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336550|gb|EAS50291.1| peptidyl-prolyl cis-trans isomerase protein [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 629

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 173/629 (27%), Positives = 305/629 (48%), Gaps = 8/629 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  +R +   W AKI L +L + F +WG+ D +F    ++ V++ G  +V    +  ++
Sbjct: 1   MLNTLRGSISGWTAKILLGLLVLSFAVWGIGD-VFRGGVANAVLTAGETEVSLQDYALAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +    ++Q+IG    +E A   G+ + ++  LV+GA LD+    I L     R+   IA
Sbjct: 60  NRAQSRLAQQIGRRPTAEEAEMFGVGQSVISQLVAGAVLDEQGRRIDLGLSQDRLAQVIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F      FS   F + L    I+E +YI        R+ +V     G+   +    
Sbjct: 120 EDPTFQDASGNFSRAQFQNALYNARISETDYIRGQENQAVRSQIVDAVSEGIAIPDAFST 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E R+++Y+ L    +P +ADPS+ VLT +F++  + Y APEY+ ++Y +    
Sbjct: 180 ALGLYNGERRTIEYVTLTPATIPPVADPSDEVLTTYFQENIETYAAPEYRSVAYAVLTPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  I+++ + A+YE+ KE+Y + E R V+Q+ FP++  A      L+ G  F  +A
Sbjct: 240 AMADPTTITDEAVAADYEQYKERYTTAEQRRVQQIAFPDEAAAQAGKAKLEAGTSFADVA 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E G+S +DI LG  ++  IPD ++A++ FSLA+ GD + V+ G+FG V+  V+ I+P  
Sbjct: 300 SEAGRSPTDIDLGLVTRSQIPDATVAEAAFSLAE-GDVSDVVSGAFGPVLLQVTEIQPET 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
             + +EV  +I + + +  AS+     Y   E+  A G +  E ++   +    +P VD 
Sbjct: 359 VQTLEEVSDEIRSALALVAASDTANSAYNAFEDARAGGATFAEGAQSAGLTVQTIPAVDR 418

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G    G+ VA  P  ++ L  VF  +  L  +  +      Y++  +    PARDR L+
Sbjct: 419 EGNGPDGQPVAEQPSAQEFLPGVFETEPGLD-NVPINFQSNGYVFYDVISIDPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V  DWK  +T  +++ +A Q+  E  + G++  D     GA   T   ++R    
Sbjct: 478 EVRDRVLADWKAAETDRQLAERAEQMKTEL-QAGRSMADAAAAAGAEARTAAAVSRQSGV 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI---SYLTQM 597
           ++  G  G++  FSG    V         S +V +V           +      S +T M
Sbjct: 537 SE-LGQAGVNAAFSGGTGTVATAAGREAGSQIVLRVVEVAPPADPAANVAANERSQMTGM 595

Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
           +  D+L++ ++ L++  ++ VH   I+R 
Sbjct: 596 LENDILETYVSLLQNDTAIAVHPAGIERA 624


>gi|313646932|gb|EFS11389.1| PPIC-type PPIASE domain protein [Shigella flexneri 2a str. 2457T]
 gi|332763740|gb|EGJ93978.1| PPIC-type PPIASE domain protein [Shigella flexneri K-671]
          Length = 622

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 122/637 (19%), Positives = 267/637 (41%), Gaps = 28/637 (4%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++ 
Sbjct: 1   MDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFN 59

Query: 62  QELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V   
Sbjct: 60  SERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQA 119

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I  +P F   D KF +  +   L + G+   +Y       L+   ++    G        
Sbjct: 120 IFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 178

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI   
Sbjct: 179 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLV 238

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                 +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F  
Sbjct: 239 AATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAA 296

Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  + 
Sbjct: 297 LAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRLD 353

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   + 
Sbjct: 354 DIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVK 411

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESI 472
                +  KD   +E+   P  + +    + G++     +  +   DG   +V ++ E  
Sbjct: 412 ATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVLRVSEHK 471

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G       
Sbjct: 472 PEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPK 529

Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKD 588
            ++R   +         +     P +    + +   +  + V+  +   K G  P  +K 
Sbjct: 530 TLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKK 585

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 AMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 622


>gi|193084249|gb|ACF09911.1| peptidyl-prolyl cis-trans isomerase ppiD [uncultured marine group
           III euryarchaeote KM3-28-E8]
          Length = 631

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 154/632 (24%), Positives = 298/632 (47%), Gaps = 9/632 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE +R   RTW  K  L +L + F IWG+ D        +TVV VG  ++    F ++ 
Sbjct: 1   MLEFLRNGVRTWYFKALLGLLVLSFAIWGVGDIFRPGLSGNTVVKVGNIEIGSQQFTSAL 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +S+ +G     E+AR + + +++++ LV+ A  +     +G+      +   I 
Sbjct: 61  QRQMQNLSRTLGSNFTLEQARGLQVPERVVEGLVTEALHESEANALGIAVGKKALVQRIR 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  ++ +F   V+   LA  G +E++++    + LSR  V+G     +  S +L +
Sbjct: 121 SEPGFRNQEGQFDRSVYEQTLAINGFSEEQFVSRLRQELSRAQVLGSLTSEVPVSEVLTN 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +   +  E R   YI + +  +  I  P +A L ++++  +  + APEY+  +Y+     
Sbjct: 181 RLYSWNAEKRVAAYIKIQHDAIANIEKPDDAALQEYYKGNESLFTAPEYRSATYVHLTGK 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           + E  I++S+ ++Q  Y++N + +  PE RTV+Q++F  ++EA      L +GK F  +A
Sbjct: 241 DVESDIDVSDADIQKLYDQNIDAFKVPERRTVQQMIFSTEEEAKTGAAHLAEGKTFAAVA 300

Query: 301 EEQGKSLSDIS--LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           ++  +   D +  LG  +K ++PD +LA+++F+L+  G  TP + G FG+ +  V+ IK 
Sbjct: 301 KDLLRQDEDATNILGDVTKIHLPD-TLAEAVFNLS-DGQVTPPLEGPFGWYVMRVTAIKA 358

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             T    EV+ DI  Q+   ++ E + +    L++ L  G S++E +R+  +V+  +  V
Sbjct: 359 PKTQQLLEVRIDIRAQLVQERSGEALYKLSNDLDDALGGGASLEEAARQVGVVAKKVTKV 418

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
           D        K +  +P   + L  +F   D   +   V L    Y+ ++      A+ + 
Sbjct: 419 DRGSNGSDEKPMNDLPPGPEFLTTLFNTPDG-QESELVDLGVNGYLILRNTGIQAAKVKP 477

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR-M 537
           LE V     K WK  +  ++    + ++ LE  K G+    I K++   + T+   NR  
Sbjct: 478 LESVRNRAIKFWKAEQRRKQTEENSKRI-LERIKGGEPLEVISKSIDVPIETSPPFNRHG 536

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGP-VQEKDKFISYLT 595
           +           +++F   V      P + G +  V K +  +KVG    +       L 
Sbjct: 537 EGAANNLPRSLAAELFGVKVGGASSAPSDRGYTIGVLKEIVKAKVGANSADVKALAEQLA 596

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           Q + +DL       L+  ++V +    +   L
Sbjct: 597 QRIGRDLEIQYNNALRQHHNVEIDQRALDNLL 628


>gi|283834240|ref|ZP_06353981.1| peptidylprolyl cis-trans isomerase D [Citrobacter youngae ATCC
           29220]
 gi|291069758|gb|EFE07867.1| peptidylprolyl cis-trans isomerase D [Citrobacter youngae ATCC
           29220]
          Length = 624

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 128/638 (20%), Positives = 270/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G +    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRELKLNISDDQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFTTPSFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINSVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    ++  +T ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRIVREATIDVNALAAKQSVTDQEVTSYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++    S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAAAMQE--TASDADIQSYYDQHQDQFTQPQRNRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +        +G   +   PD         L +KG  + VI  S G+++A +
Sbjct: 297 ALAKEKSADIISARKGGDMGWLEESTTPD---ELKNAGLKEKGQLSGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P+      E + DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDVQPAQVKPLSEARDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQAAGM 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  +D   KE+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KAVETGWFSRDSLPKELNFKPVADIIFNGGLVGENGTPGSNSDIITVDGDRAFVLRIAEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                + L EV   V    K  K  ++    A++L+ +  K GK   D  K  G S    
Sbjct: 472 KAEAVKPLAEVKEQVTALVKHNKAVQQAKLDADKLLADL-KAGKG-DDAMKAAGLSFGEA 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +       G+    S P +    + + N +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRTGQDPLSQAAFGL----SLPAQDKPSYGVANDMQGNVVLLALEEVKAGSMPEAQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   +   +++++ L+    + V D L Q+
Sbjct: 586 KAMVQGITQNNAQITFEALMSNLRKAAKIKVGDALEQQ 623


>gi|307942204|ref|ZP_07657555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseibium sp.
           TrichSKD4]
 gi|307774490|gb|EFO33700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseibium sp.
           TrichSKD4]
          Length = 635

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 169/632 (26%), Positives = 305/632 (48%), Gaps = 10/632 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK + TWVAKIF+ +L   F +WG++D +FS  G +TV  VG  ++   +F  ++
Sbjct: 1   MLDALRKGAGTWVAKIFIALLVFSFAVWGVAD-VFSGFGQNTVAKVGETEIATVAFDRAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L    +++G  +++      G+ ++ L  +++ A L++   ++ L      + G I 
Sbjct: 60  RQDLNRFGRQLGRPLSTTEGAQFGIPQQTLGRMIAEAALNETGRELNLGISDDHLAGIIQ 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F      +   +    L   G++E EY+    +   R  +     G M      L+
Sbjct: 120 NDPNFRRAGGGYDRALLAQVLRNIGMSEDEYVIQQREFAERQQIAQAVSGDMPAPTAYLE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E R +  IVL    V  I DP  A L  +FE+ K  +RAPEY++++ +     
Sbjct: 180 VLNAYENETRDISLIVLTAEQVGEIEDPDQAALEAYFEENKVAFRAPEYRKVTLLELTPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
              +  +IS+D    EYE++K +YF  E R   Q+VF +  EA EA Q L  G  F +L 
Sbjct: 240 ALARPEDISDDMALDEYERDKSRYFEAEKRRARQIVFQDPAEAAEASQRLSDGTTFEELM 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E+  S +D++LG  ++E   D ++ ++ FSL+  G  +  + G F   I +V  I+P  
Sbjct: 300 AERNLSDNDVNLGLMAQEDFLDTAVGEAAFSLS-VGGTSEPVDGRFSTAIVNVLEIQPEA 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T  F +VK DI   +   +A  +V +    +E+  A G  + E++ R ++ +      D 
Sbjct: 359 TQPFDDVKADIKALLAAEQAEREVLDLLDEIEDARAGGDLLAEVAERLQLTTTMPDAFDH 418

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           AGK +    V ++P   +L+  VF  D  +  D  V L +  ++W ++ E IPAR+R L+
Sbjct: 419 AGKGLDENSV-SLPDAVELISGVFSSDVGVEND-PVQLGNRGFLWYEVSEVIPARERTLD 476

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  + A+ + + A+    E  K G+  + + +  G ++ T + + R    
Sbjct: 477 EVTQKVIDAWKEAELAKRLENMADD-YAERVKNGETMQALAETAGLTVQTNDGVKRT-AT 534

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS----YLTQ 596
           +     +G++Q+F+GP  +V      +  + VV KV    +     +++ I      L  
Sbjct: 535 SLAVSRNGLTQLFAGPEGLVAAVEAADSAARVVAKVNKVNIPAFFAEEQGIQALGMQLAN 594

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
            M   LL   ++ ++ +  V ++D  +   L 
Sbjct: 595 QMQDSLLSQYVSGIEERAGVEINDGAVALVLG 626


>gi|333010902|gb|EGK30328.1| PPIC-type PPIASE domain protein [Shigella flexneri K-272]
 gi|333020704|gb|EGK39964.1| PPIC-type PPIASE domain protein [Shigella flexneri K-227]
          Length = 623

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 121/638 (18%), Positives = 266/638 (41%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +  F   D KF +  +   L + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATSAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+   E  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPATEQEIASYYEQNKNNFMTSEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                  +  +S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 VAAMM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G      IPD         L +KG  + VI  S G++I  +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  KD   +E+   P  + +    + G++     +  +   DG   +V ++ E 
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L +V   VK   +  K  ++    A +L+++  K GK    + +  G      
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +     P +    + +   +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|324114668|gb|EGC08636.1| ppic-type ppiase domain-containing protein [Escherichia fergusonii
           B253]
          Length = 622

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 123/637 (19%), Positives = 272/637 (42%), Gaps = 28/637 (4%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++ 
Sbjct: 1   MDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAFN 59

Query: 62  QELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            E   + Q++G   +   +       L +++L+ L+  A LDQ+  D+ L     +V   
Sbjct: 60  SERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQA 119

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I  +P F   D KF +  + + L + G++  +Y       L+   ++    G        
Sbjct: 120 IFATPAFQ-VDGKFDNSRYNAILNQMGMSADQYAQALRNQLTTQQLINGIAGTDFMLKGE 178

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            D+      + R V    ++          S+A +T +++++K+N+  PE  R+SYI+ D
Sbjct: 179 TDELAALVSQQRVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRVSYIMLD 238

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                 +  +S+ ++QA Y+++++++  P+      +    + EA     +L  G  F +
Sbjct: 239 AANI--QQPVSDADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNGGDFAE 296

Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+E+   +    +   LG       P   L D+   L  KG  + VI  S G+++  + 
Sbjct: 297 LAKEKSADIISARNGGDLGWLEDSTTP-QELKDA--GLKDKGQLSGVIKSSVGFLVVRLD 353

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           +++P+   +  EV+ DIA +++  KA +      +++ +  A     + ++  E+   + 
Sbjct: 354 DVQPAKVKTLAEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVK 411

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESI 472
                +  +    +E+   P  + +    + G++     +  +   DG   +V ++ E  
Sbjct: 412 AKETGWFSQQNLPEELNFKPVADAIFSGSLVGENGTPGSNSDIITVDGDRAFVLRVSEHK 471

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
               + L EV   VK   +  K  ++   +A +L++E  K GK   D  +  G       
Sbjct: 472 AEAIKPLSEVKDQVKALVQHDKAEQQAKLEAEKLLVEL-KAGKGV-DAMRAAGLQFGEQK 529

Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKD 588
            ++R   +         +     P +    + +      + V+  +   K G  P  +K 
Sbjct: 530 TLSRSGQD----PVSLAAFALGLPEKDKPSYGMATNTQGNVVLLALDEVKAGTMPEAQKQ 585

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 ALVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 622


>gi|217976694|ref|YP_002360841.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
           silvestris BL2]
 gi|217502070|gb|ACK49479.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
           silvestris BL2]
          Length = 636

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 164/638 (25%), Positives = 304/638 (47%), Gaps = 16/638 (2%)

Query: 1   MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+ +R A++ W+ +    I L  + + F +WG+ D +F   G++ +  VG +++   +F
Sbjct: 1   MLDAMRAATKGWIGRTVMGIVLGFIILSFAVWGIGD-IFRGFGANKLAEVGNEQITTEAF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ EL    ++    + ++ A+  GLD+++L  LVS A LDQ    +GL      + 
Sbjct: 60  RFAYQTELQRAQRQARRAITNDEAKRFGLDRQVLSRLVSEAVLDQETHALGLAMSDAEIA 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             IA  P F G   +F    F   L   G+ EK ++     +  R +++     G++   
Sbjct: 120 RTIAADPSFKGASGQFDRARFEELLRDNGLTEKAFVREQRGVYLRQELIDSMTNGLQLPK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +L+   R+  E R++DY VL       IA PS+  L ++FE  K  Y APEY+ +  + 
Sbjct: 180 AMLELIHRYQTETRTLDYFVLPAAAAGTIALPSDDELGKYFEDRKLGYSAPEYRTLVTLT 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                  K   +S+ +    Y++ K EKY +PE R ++QL F +   A  A + L  G  
Sbjct: 240 LTPESIAKPDAVSDADALRRYDEIKGEKYGAPEKRQIDQLFFSDPAAAAAAREKLDAGAS 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  +  +QG ++ D+SLG  ++  + D ++AD  F+L +    +  +   FG V+  V+ 
Sbjct: 300 FEDIVAQQGSTMKDVSLGLVTRGQLIDKAVADVAFALPES-AVSAPVKTQFGSVLIRVAA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+PS    F++VK++I  ++  T+A  ++   +  +E+  A G ++ E ++   +    +
Sbjct: 359 IEPSSAKPFEDVKEEIKREIATTRARGEIARLHDAIEDQRASGKTLTEAAKSAGLEVRVI 418

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
           P VD  GKD  G  +A +     LL   F  D  +  + T++LP G Y W ++ +   AR
Sbjct: 419 PAVDAGGKDAAGVPIADLANSAALLKAGFASDLGVD-NETLSLPQGGYQWFEVGKIDRAR 477

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
            +  EE    V+K W+  +TA+ +++K   L  +  + G+    +    G  +     + 
Sbjct: 478 QKSFEEAKPAVEKAWRDDETAKLMTAKTIDL-TKRLESGEPMAKVAAEGGFEVKRAQNVR 536

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
           R   +N  F    ++Q F+  V  V    +E G   +VFKV  +   P+   D  +  L 
Sbjct: 537 RGGGDN--FPQPAVAQAFNVGVGGVGSTRLEAGD-RLVFKVAGATAPPIDFADATLVSLA 593

Query: 596 QMM----NKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
             +    + DL+   +  L+++  V ++   +     G
Sbjct: 594 NEVKKSYSDDLVTQYLGTLQNKLGVKINAQALAAATSG 631


>gi|237730418|ref|ZP_04560899.1| peptidyl-prolyl cis-trans isomerase [Citrobacter sp. 30_2]
 gi|226905957|gb|EEH91875.1| peptidyl-prolyl cis-trans isomerase [Citrobacter sp. 30_2]
          Length = 624

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNFAAKVNGQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ LV  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLVDEALLDQYSRELKLNISDDQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRIVREATIDVNALAAKQSVTEQEVASYYEQNKNNFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++    S+ ++Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAAAMQE--TASDADIQSYYDQHQDQFTQPQRNRYSIIQTKTEDEAKAVLDELNKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +        +G       PD         L +KG  + VI  S G+++A +
Sbjct: 297 ALAKEKSADIISARKGGDMGWLEDSTTPD---ELKNAGLKEKGQLSGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P+      E + +IA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDVQPAQVKPLSEARDEIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQAAGM 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  +D   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KAVETGWFSRDSLPEELNFKPVADIIFNGGLVGENGTPGSNSDIITVDGDRAFVLRIAEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                + L EV   V    K  K  ++    A++L+ +  K GK   +  K  G S    
Sbjct: 472 KAEAVKPLAEVKEQVTALVKHNKAEQQAKLDADKLLADL-KAGKG-DEAMKAAGLSFGEA 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +       G+    S P +    + + N +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRTGQDPLSQAAFGL----SLPAKDKPSYGVANDMQGNVVLLALDEVKAGSMPEAQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+    + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKAAKIKIGDALEQQ 623


>gi|157146942|ref|YP_001454261.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Citrobacter
           koseri ATCC BAA-895]
 gi|157084147|gb|ABV13825.1| hypothetical protein CKO_02719 [Citrobacter koseri ATCC BAA-895]
          Length = 623

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 122/636 (19%), Positives = 274/636 (43%), Gaps = 24/636 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L   S  +    V  Q++  S F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGSN-NYAAKVNDQEISRSQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYAHELKLSISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +  F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFSTAAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLIAGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    ++  ++ ++E+ K+ +  PE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQQATDQEVSSYYEQNKNRFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++   +++ ++Q+ Y+++++++  P+      +    + EA     +L KG  F 
Sbjct: 239 DAAAMQE--TVNDADIQSYYDQHQDQFTQPQRNRYSVIQTKTEDEAKAVLDALNKGGDFA 296

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSN 355
            LA+E+   +     G     ++ D +  D +    L +KG  + VI  S G+++A + +
Sbjct: 297 ALAKEKSADIISARNGG-DMGWLEDATTPDELKNAGLKEKGQLSGVIKSSVGFLVARLDD 355

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           ++P+      E + DIA +++  KA +      +++ +  A     + ++  E+   +  
Sbjct: 356 VQPAKVKPLSEARDDIAAKVKQEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVKA 413

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIP 473
               +   D   +E+   P  + +    + G++     +  +   DG   +V +I E  P
Sbjct: 414 VETGWFSHDNLPEELNFKPVADAIFNGGLVGENGTPGSNSDIITVDGDRAFVLRISEHKP 473

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
              + L +V   V    K  K  ++    A++L++E  K GK    + K  G S      
Sbjct: 474 EAVKPLADVKEQVAALVKHNKAEQQAKLDADKLLVEL-KAGKGAEAM-KAAGLSFGEAKT 531

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDK 589
           ++R   +         +     P +    + + N +  + V+  + + K G  P ++K  
Sbjct: 532 LSRTGQD----PVSQAAFALGLPEKDKPSYGVANDMQGNVVLLALDDVKAGSMPEEQKKA 587

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            +  +TQ   +   +++++ L+    + V D L Q+
Sbjct: 588 MVQGITQNNAQITFEALMSNLRKAAKIKVGDALEQQ 623


>gi|239832027|ref|ZP_04680356.1| rotamase family protein [Ochrobactrum intermedium LMG 3301]
 gi|239824294|gb|EEQ95862.1| rotamase family protein [Ochrobactrum intermedium LMG 3301]
          Length = 628

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 174/631 (27%), Positives = 313/631 (49%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++WVAK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWVAKLLLGLLVLSFAIWGISDVFRGGLSGNAALTAGGSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +     
Sbjct: 61  EQQMMRLSQQFRQRLTREQAKTLGVENQVLAQLAAGVVLDEGARNMQLGLSKDGIARLTG 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+D+  K+  R  +V     G++  +  L 
Sbjct: 121 EDPAFHDASGNFNRAQFDAVLRQSGIRAQDYLDNRAKVARRQQIVEAATDGIKLPDAALK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E RSVDY+ +      A+  PS+  L  +FE  KD Y+APEY++++Y+  +  
Sbjct: 181 ALALYQGETRSVDYVTIQAEKADAVPAPSDDALKTYFEARKDEYKAPEYRKVTYVKLEPA 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK+++ + E R +EQL F +   A+ A Q +  G  F+ + 
Sbjct: 241 DIADPSAVTQDEISEYYEKNKDRFGTIEKRAIEQLNFADDAAAEAAQQKIAAGTSFVDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+  D+ LG+F K  IPD ++AD+ F+LA+ G  +PV+ GSFG VI  V+ I+P+ 
Sbjct: 301 KEQGKTEDDLKLGTFEKSAIPDQAVADAAFALAENG-VSPVVKGSFGPVILRVTQIEPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I   +    A+  +   +   E+  + G SM +++++  + ++ +  VD 
Sbjct: 360 VKPLAEVEGEIRTTLANNIAASSISGIHDSYEQERSDGASMADVAKKLSLKTVTVEAVDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  G  V  +P  E LL   F  D     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 GGNDPSGNPVQ-LPNSEALLAAAFQADQGFDND-ALTMGNVGYLWYQVDGITPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ +  +L       G     I   LG    T   + R  N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRVEELKKRLD-GGATLDTIASELGVEKQTKRGVVRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G           +  + ++FKVT        GP    ++   Y   
Sbjct: 537 ADI-GTAAAAQIFRGANGFTGSAAAPSDDAQILFKVTEVTEPAAAGPEAIPEQQQKYQAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            ++ D+L+ ++  L+ QY V ++  +I   L
Sbjct: 596 SLSDDILEQLVGELQKQYPVKINQTVINNAL 626


>gi|298291797|ref|YP_003693736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM
           506]
 gi|296928308|gb|ADH89117.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM
           506]
          Length = 629

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 167/631 (26%), Positives = 294/631 (46%), Gaps = 6/631 (0%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE +RK++   VAKI + +L V F IWG++D +F   GS T+ ++G  ++    F   +
Sbjct: 1   MLETLRKSASGIVAKILMGLLIVSFGIWGIAD-VFRGFGSQTLATIGDTEITVPEFRQLY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q L  +SQ++   +  E+AR+ G+  ++L   ++ A L+   + +GL      +   + 
Sbjct: 60  QQRLQQVSQQLKRGITPEQARAFGIPDQLLQEQLAEAALNDQAKSLGLALSDAEIARRVQ 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P F G    F  + F   L   G  E  +++    +  R  ++    GG+    +L D
Sbjct: 120 SNPSFFGPGGSFDPNYFNQLLRSNGFTEARFVEAERGLAVRQQLIQSLGGGVTVPQVLKD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R+  E RSV+Y +L    +PA+A+PS+  L ++F++ K  +RAPEY+++S ++    
Sbjct: 180 ALARYESEERSVNYAMLTAHALPALAEPSDEELRKFFDERKIAFRAPEYRKVSVLVLTPE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  IS+ +++A Y+ N   Y +PE R V+Q+VFPN++EA  A   +  G  F  + 
Sbjct: 240 ALANSESISDADVEAAYKANLASYGTPEKRVVQQIVFPNEQEAAAAAARITAGTPFADII 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E+     D+ LG  ++  I D ++AD+          + V+ G FG VI HV  + P  
Sbjct: 300 AERKLEAKDVELGDVTRADIFDKAVADAA-FALAPDATSGVVAGRFGPVIVHVGTVTPGT 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T    EV   I  Q+++  A   V   Y ++E+  A G  + EI+ +  I        + 
Sbjct: 359 TKPLTEVAGQIRTQLQLDTARRAVLTKYDQIEDERAGGAMLAEIASKAGIPVQSFD-TNI 417

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G+   G  + +IP + ++L   F  D     D      +G Y+W  +      RDR  E
Sbjct: 418 QGQTPDGSSIPSIPGRAEVLRGAFAADVGSDNDPVQLPQNGGYVWFAVDGITAPRDRTFE 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           E    V   WK  +TA+ +  K   +  + +  G+ F     + G  L   N + R    
Sbjct: 478 EARAQVLDRWKQDQTAQALDKKVEDIKAKVA-GGEAFDKAVTDAGLELRAANGLRRGRAA 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMN 599
           +     D +  VF  P   V     E G S ++F+V    V P   + +K +S + Q + 
Sbjct: 537 DGV-PQDILEAVFETPQGQVGSSLAEGGESRLLFQVLRVSVPPAATQDEKLLSDVRQSLE 595

Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
            DL+   +  L+ Q    ++   + + +  +
Sbjct: 596 NDLMTEYVVELQGQLGPRINRAALDQIVGTD 626


>gi|261341042|ref|ZP_05968900.1| peptidylprolyl cis-trans isomerase D [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316907|gb|EFC55845.1| peptidylprolyl cis-trans isomerase D [Enterobacter cancerogenus
           ATCC 35316]
          Length = 624

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 120/634 (18%), Positives = 263/634 (41%), Gaps = 20/634 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLIG-GGANYAAKVNGQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L ++ L+ L+  A LDQ+ +++GL     +V  
Sbjct: 60  AGERNRMQQQLGDQFSELAANEGYMNNLRQQTLNRLIDEALLDQYAKNLGLGISDEQVKK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +  F   + KF +  + S + + G+   +Y       L+   ++   VG       
Sbjct: 120 AIFSTQAFQS-NGKFDNTRYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    S+A +  W+E+ K+++ APE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQQVSDAEVNAWYEQNKNSFVAPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    +     S+ ++Q+ Y+++++++  P+      +    + +A      L KG  F 
Sbjct: 239 DAAALQGNA--SDADIQSYYDQHQDQFTQPQRNRYSVIQTKTEADAKAVLDELNKGADFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+ +   +    +   +G       PD         L  KG  + VI  S G+++A +
Sbjct: 297 TLAKAKSTDIISAKNGGDMGWLEAATTPD---ELKNAGLKDKGQLSGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++ + T    EV+ +IA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDVQAAKTKPLAEVRDEIAAKVKQEKALDAFYALQQKVSD--AASNDNESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 + G D   +E+   P  + +    + G++     +  +   DG   +V ++ + 
Sbjct: 412 KAVETGWFGHDNLPEELNFKPVSDAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRVTDH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                + L EV   V    K  K  ++    A +L+    K GK    + K  G S    
Sbjct: 472 KAEAVKPLAEVKDQVIAQVKHSKAEQQAKLDAEKLLAAL-KAGKGDEAL-KAAGLSFGEA 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
             ++R   +        +SQ   G         ++  +  +      +   P  +K   +
Sbjct: 530 KTLSRTGQDPVSQAAFSLSQPAKGKPGYGTATDMQGNVVLLALDEVKAGTLPDAQKKAMV 589

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             +TQ   +   +++++ L+ +  + + D + Q+
Sbjct: 590 QGITQNNAQITFEAMMSNLRKEAKIKLGDVITQQ 623


>gi|328543803|ref|YP_004303912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [polymorphum gilvum
           SL003B-26A1]
 gi|326413547|gb|ADZ70610.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polymorphum gilvum
           SL003B-26A1]
          Length = 630

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 158/632 (25%), Positives = 300/632 (47%), Gaps = 11/632 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK + T+VAKIF+ +L + F +WG++D +F   G +    VG  ++   SF  ++
Sbjct: 1   MLDALRKGAGTFVAKIFIALLILSFAVWGIAD-IFQGFGRNVAARVGDTEISLQSFDQAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++EL  +S++IG  +++     +GL +++L  LV+ A LD     + L      +   I 
Sbjct: 60  RRELSALSRQIGRPLSTTEGAQIGLPQQVLGRLVAEAALDDDARAMTLGISDAELIRVIQ 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P+F      F        L   GI+E +Y+    ++  R  +     G +    +LL+
Sbjct: 120 ADPVFQRPGGGFDRARLAQLLRANGISEDDYVVERRRLAERQQIAEALSGSLISPQVLLE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E R+V Y++L    V +IA+P +A L  +F+  +  +RAPEY+R++ +     
Sbjct: 180 AFNAYQNETRTVRYLLLTPAAVGSIAEPDDAALEAYFDDNRAAFRAPEYRRLALLELTPD 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
              +  E+++ + ++ YE+   ++   E R V Q+ FP+   A  A + L  G  F +L 
Sbjct: 240 AVARPDEVTDADARSAYERAGSRFSEDERRRVRQMPFPDADAARAAAERLASGASFAELM 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E+  + +D+ LG   K    D ++A++ F+L + G  +  + G F  VI   + I+P+ 
Sbjct: 300 AERNLAEADVDLGLMRKSDFLDPAIAEAAFALDE-GAVSGAVEGRFATVILEAAEIRPAA 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T  F+EV+ ++  ++   +A  +V + +  +E+  A G ++ EI+ R K+     P +D 
Sbjct: 359 TRPFEEVRDELKQEIARERAEREVLDIHDEIEDARAGGAALAEIAERFKLALATPPALDA 418

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            GK   G  V ++P  + LL   F  D  +  D  + L +  ++W ++ E IPARDR L+
Sbjct: 419 TGKAETGATV-SLPDGDGLLREAFDSDVGIEND-PLPLGERGFVWYEVAEVIPARDRPLD 476

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   W   +  + ++   +    +  K G++   +  +LG  + T+  + R   +
Sbjct: 477 EVRPSVVIAWGAAERIKRLADL-SAGTADRLKAGESLDVVAADLGLEVKTSAPLKR-ATD 534

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
           +  F        FSGP   V     ++G + +V  V             E       + +
Sbjct: 535 SGDFTAAAAGSAFSGPAGTVAEAAGKDG-NRIVMMVDAISSPAFFMEADEVKAIDEQVAR 593

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
            +   LL+  ++ ++    V V+   I + L 
Sbjct: 594 QLQDSLLNQYVSEIERTRGVEVNQAAIAQVLG 625


>gi|49475360|ref|YP_033401.1| peptidyl-prolyl cis-trans isomerase protein [Bartonella henselae
           str. Houston-1]
 gi|49238166|emb|CAF27375.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella henselae
           str. Houston-1]
          Length = 629

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 155/634 (24%), Positives = 308/634 (48%), Gaps = 16/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+IIR A+ +W+A+IFL +L + F++ WG+            ++S G   +    +  +
Sbjct: 1   MLDIIRNATNSWIARIFLAILLLCFILLWGIPQ--LHTKSERDLISSGESIITIDDYRLA 58

Query: 60  WKQELGMIS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              +   ++   ++G +      +   +   + + L      D+    + +      +  
Sbjct: 59  LADQSARLALASRLGRMFTPNEMQQYQIPAFVFNQLQQDVLFDEQTRQMKINLSKDAIAR 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           +I    +F   +  F HD+F + L +  I+E  ++D+YTK   R  ++   + GM+  +L
Sbjct: 119 KIGADNMFQ-INGVFKHDLFRNYLQQLHISESNFLDYYTKKEKRNQLISASLSGMKAPDL 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                  +  E R  DY+VL+ +    I++P    L +WFE +++ +R PEY+ IS++  
Sbjct: 178 FYKALAFYQRETRIADYLVLDLKEKEIISEPHQETLQKWFETHRNKFRVPEYRTISFLSM 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           ++ +  K  +IS DE++  Y +N  ++ +PE RT+E+L FP ++ AD A + +  G  F 
Sbjct: 238 ELADFIKPKDISEDEVKNYYTQNSSRFITPEKRTIEELRFPTREAADNAVKKIADGLSFD 297

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            L + + K+L+DI  G F++  +P   L+  IF L K+G  + VI+   G VI  V++I 
Sbjct: 298 DLVKAENKTLNDIKKGPFTENELP-SYLSSEIFEL-KQGQISAVINDLQGPVIIRVTDIT 355

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           P+  + F++V+ +I   +   +A++ ++  Y  +E     G S  E++ + K+    +  
Sbjct: 356 PAGPIPFEKVEDNIRQTLAQNRAADDIRNSYTEIENARFEGASFKELADQYKLPLRTI-T 414

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           +D  GK ++G  +  +P K+ LL  ++  ++    D  ++LP+G Y+W +I   IPARD+
Sbjct: 415 LDKTGKTIEGTILTDLPQKDLLLNSIYQSNEGADLD-PLSLPNGGYLWYKINTIIPARDK 473

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             EE   +V   WK  +    +  KA    L+   EGK+   +   LG +  TT  + R 
Sbjct: 474 TFEEAKQEVIAQWKKEEIQRLLDEKAKD-ALKQLTEGKSLVSLAHILGVTKQTTQPLRRQ 532

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISY 593
           D+ ++  G++G+  +FSGP             + +++++          P        S 
Sbjct: 533 DS-SEILGFEGVKALFSGPKGHYGIVKGPIAKNRILYQIKEVTTPKDISPHTLSSDIRSN 591

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           +  M+ +DL   ++     ++ + ++     +  
Sbjct: 592 IDMMIREDLKLEMLHVANKEHPLKINSANYNQIF 625


>gi|146310569|ref|YP_001175643.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter sp.
           638]
 gi|145317445|gb|ABP59592.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter sp.
           638]
          Length = 624

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 121/636 (19%), Positives = 270/636 (42%), Gaps = 24/636 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ + F++ G+S  L   S S+    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIILSFILTGVSGYLIGGS-SNYAAEVNGQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L ++ ++ L+  A LDQ+ + +GL     +V  
Sbjct: 60  AGERNRMQQQLGDQFSELAANEGYMKTLRQQTVNRLIDEALLDQYAKRLGLGISDDQVKK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +  F   + KF +  + + + + G+   +Y       L+   ++   VG       
Sbjct: 120 AIFSTQAFQ-TNGKFDNTRYNAIVNQMGMTADQYAQALRNQLTSQQLINAVVGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    S+  +  ++E+ K+N+ APE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVRAATIDVNALAAKQQASDEEVKAYYEQNKNNFTAPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D     +    S+ ++Q+ Y+++++++   +      +    + +A      L KG  F 
Sbjct: 239 DAATMPE--TASDSDIQSYYDQHQDQFTQAQRNRYSVIQTKTEADAKAVVDELAKGADFA 296

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSN 355
            +A+ +   +     G     ++ D +  + +    L +KG  + VI  S G+++  + +
Sbjct: 297 TVAKAKSTDIISAKNGG-DMGWLEDATTPEELKNAGLKEKGQLSGVIKSSVGFLVVRLDD 355

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+P+ T    EV+ DIA +++  KA +      +++ +  A     + ++  E+   +  
Sbjct: 356 IQPAKTKPLAEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQAAGVKA 413

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIP 473
            +  + G D   +E+   P  + +    + G +     +  +   DG   +V ++ E   
Sbjct: 414 VVTGWFGHDNLPEELNFKPVSDAIFNGGLLGDNGTPGNNSDIITVDGDRAFVLRVTEHKA 473

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
              + LE+V   +    K  K  ++    A +L+ E  K GK      K  G S      
Sbjct: 474 EAIKPLEDVKDQIATLVKHTKAEQQAKLDAEKLLAEL-KAGKG-DAALKAAGLSFGEAKT 531

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDK 589
           ++R   +       G+    S P +    +   + +  + VV  +   K G  P ++K  
Sbjct: 532 LSRTGQDPISQAAFGL----SLPAKDKPSYGTASDMQGNIVVLALDEVKAGTMPDEQKKA 587

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            +  +TQ   +   +++++ L+ +  + + D + Q+
Sbjct: 588 MVQGITQNNAQIAFEALMSNLRKEAKIKLGDIITQQ 623


>gi|153009380|ref|YP_001370595.1| rotamase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561268|gb|ABS14766.1| rotamase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 628

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 177/631 (28%), Positives = 313/631 (49%), Gaps = 9/631 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R A+++WVAK+ L +L + F IWG+SD        +  ++ G  +V  + +  ++
Sbjct: 1   MLDSLRSAAQSWVAKLLLGLLVLSFAIWGISDVFRGGLSGNAALTAGGSEVSATDYRFAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++  +SQ+    +  E+A+++G++ ++L  L +G  LD+   ++ L      +     
Sbjct: 61  EQQMMRLSQQFRQRLTREQAKTLGVENQVLAQLAAGVVLDEGARNMQLGLSKDGIARLTG 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH     F+   F + L + GI  ++Y+D+  K+  R  +V     G++  N  L 
Sbjct: 121 EDPAFHDASGNFNRAQFDAVLRQSGIRAQDYLDNRAKVARRQQIVEAATDGIKLPNTALK 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E RSVDY+ +      A+  PS   L  +F+ +KD Y+APEY++I+Y+  +  
Sbjct: 181 ALALYQGETRSVDYVTIQAEKADAVPAPSEDALKTYFDAHKDEYKAPEYRKITYVKLEPT 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      ++ DE+   YEKNK+++ + E RT+EQL F +   A+ A Q +  G  FI + 
Sbjct: 241 DIADPSAVTQDEINEYYEKNKDRFSTIEKRTIEQLNFADDAAAEAAQQKIAAGTSFIDIG 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +EQGK+  D+ LG+F K  IPD ++AD+ F+LA+ G  +PV+ G FG VI  V+ I+P+ 
Sbjct: 301 KEQGKTEDDLKLGTFEKSAIPDQAVADAAFALAENG-VSPVVKGGFGPVILRVTQIEPAH 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+ +I   +    A+  +   +   E+  + G SM +++++  + S+ +  VD 
Sbjct: 360 VKPQAEVEGEIRTTLANNIAASSISGIHDSYEQDRSDGASMADVAKKLSLKSVIVEAVDA 419

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G D  G  V  +P  E LL   F  D     D  + + +  Y+W Q+    PARDR L+
Sbjct: 420 EGNDPSGNPVQ-LPNSEALLSAAFQADQGFDND-ALTMGNIGYLWYQVDGVTPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V   WK  +  + ++ + ++L       G     I    G    T   I R  N+
Sbjct: 478 EVKDKVAAAWKGEEAVKRLNQRVDELQKRLD-GGATLDAIATEQGVEKQTKRGIVRTTND 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
               G    +Q+F G           +  + ++FKV         GP    ++   YL  
Sbjct: 537 ADI-GTAAAAQIFRGANGFTGSAAAPSDDAQILFKVVEVTEPAGAGPEAIPEQQQKYLAT 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            ++ D+L+ ++  L+ QY V ++  +I   L
Sbjct: 596 SLSDDVLEQLVGELQKQYPVKINQTVINNAL 626


>gi|296101563|ref|YP_003611709.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295056022|gb|ADF60760.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 623

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 121/634 (19%), Positives = 265/634 (41%), Gaps = 21/634 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLIG-GGANYAAKVNGQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L ++ L+ L+  A LDQ+ + +GL     +V  
Sbjct: 60  AGERNRMQQQLGDQFSELAANEGYMKTLRQQTLNRLIDEALLDQYAKKLGLGISDEQVKK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +  F   + KF +  + S + + G+   +Y       L+   ++   VG       
Sbjct: 120 AIFSTQAFQS-NGKFDNARYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    S+A +  W+E+ K+++ APE  R+SYI  
Sbjct: 179 ETDELAALVAQQRVVRQATIDVNALAAKQQVSDAEVNAWYEQNKNSFVAPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++    ++ E+Q+ Y+++++++  P+      +    + +A      L KG  F 
Sbjct: 239 DAAALQE--TATDAEIQSYYDQHQDQFTQPQRNRYSVIQTKTEADAKAVLDELNKGADFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            +A+ +   +    +   +G       PD         L  KG  + VI  S G+++A +
Sbjct: 297 TVAKAKSTDIISAKNGGDMGWLEAATTPD---ELKNAGLKDKGQLSGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+ + T    EV+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIEAAKTKPLAEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 + G+D   +E+   P  + +    + G++     +  +   DG   +V ++ E 
Sbjct: 412 KAVETGWFGRDNLPEELNFKPVSDAIFNGGLVGENGTPGSNSDIITVDGDRAFVLRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L EV   V    K  K  ++    A +++ +  K GK   D  K  G S    
Sbjct: 472 KPEAIKPLAEVKDQVVAQVKHSKAEQQAKLDAEKILADL-KAGK--EDALKAAGLSFGDA 528

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
             ++R   +       G+S              ++  +  +      +   P  ++   +
Sbjct: 529 KTLSRTGQDPISQAVFGLSLPAKDKPSFGTTTDMQGNVVLLALDEVKAGTMPEAQRKAMV 588

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             +TQ   +   +++++ L+ +  + + D + Q+
Sbjct: 589 QGITQNNAQIAFEAMMSNLRKEAKIKLGDAITQQ 622


>gi|309787033|ref|ZP_07681645.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 1617]
 gi|308924611|gb|EFP70106.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 1617]
          Length = 611

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 122/626 (19%), Positives = 261/626 (41%), Gaps = 28/626 (4%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           + KI   ++ V F++ G+S  L    G++    V  Q++    F N++  E   + Q++G
Sbjct: 1   MLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLG 59

Query: 73  FVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
              +   +       L +++L+ L+  A LDQ+  ++ L     +V   I  +P F   D
Sbjct: 60  DQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQ-VD 118

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
            KF +  +   L + G+   +Y       L+   ++    G         D+      + 
Sbjct: 119 GKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQ 178

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  D      +  +S
Sbjct: 179 RVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATM--QQPVS 236

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL-- 307
           + ++Q+ Y+++++++  P+      +    + EA      L KG  F  LA+E+   +  
Sbjct: 237 DADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIIS 296

Query: 308 --SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
             +   +G      IPD         L +KG  + VI  S G++I  + +I+P+   S  
Sbjct: 297 ARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLD 353

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           EV+ DIA ++R  KA +      +++ +  A     + ++  E+   +      +  KD 
Sbjct: 354 EVRDDIAAKVRHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVKATQTGWFSKDN 411

Query: 426 KGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVL 483
             +E+   P  + +    + G++     +  +   DG   +V +I E  P   + L +V 
Sbjct: 412 LPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQ 471

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
             VK   +  K  ++    A +L+++  K GK    + +  G        ++R   +   
Sbjct: 472 EQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRSGRD--- 526

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMN 599
                 +     P +    + +   +  + V+  +   K G  P  +K   +  +TQ   
Sbjct: 527 -PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNA 585

Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQR 625
           + + +++++ L+ +  + + D L Q+
Sbjct: 586 QIVFEALMSNLRKEAKIKIGDALEQQ 611


>gi|332098560|gb|EGJ03526.1| PPIC-type PPIASE domain protein [Shigella boydii 3594-74]
          Length = 611

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 121/626 (19%), Positives = 261/626 (41%), Gaps = 28/626 (4%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           + KI   ++ V F++ G+S  L    G++    V  Q++    F N++  E   + Q++G
Sbjct: 1   MLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLG 59

Query: 73  FVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
              +   +       L +++L+ L+  A LDQ+  ++ L     +V   I  +P F   D
Sbjct: 60  DQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQ-VD 118

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
            KF +  +   L + G+   +Y       L+   ++    G         D+      + 
Sbjct: 119 GKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQ 178

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           R V    ++   + A    +   +  ++E+ K+N+  PE  R+SYI  D      +  +S
Sbjct: 179 RVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATM--QQPVS 236

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL-- 307
           + ++Q+ Y+++++++  P+      +    + EA      L KG  F  LA+E+   +  
Sbjct: 237 DADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIIS 296

Query: 308 --SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
             +   +G      IPD         L +KG  + VI  S G++I  + +I+P+   S  
Sbjct: 297 ARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLD 353

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           EV+ DIA +++  KA +      +++ +  A     + ++  E+   +      +  KD 
Sbjct: 354 EVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVKATQTGWFSKDN 411

Query: 426 KGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVL 483
             +E+   P  + +    + G++     +  +   DG   +V +I E  P   + L +V 
Sbjct: 412 LPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQ 471

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
             VK   +  K  ++    A +L+++  K GK    + +  G        ++R   +   
Sbjct: 472 EQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRSGRD--- 526

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMN 599
                 +     P +    + +   +  + V+  +   K G  P  +K   +  +TQ   
Sbjct: 527 -PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNA 585

Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQR 625
           + + +++++ L+ +  + + D L Q+
Sbjct: 586 QIVFEALMSNLRKEAKIKIGDALEQQ 611


>gi|260776378|ref|ZP_05885273.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260607601|gb|EEX33866.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 619

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 126/632 (19%), Positives = 256/632 (40%), Gaps = 34/632 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   +   S  ++   VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSN-NSAAKVGNVEIGRGEFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++  A         K +LD +++   L+Q  E +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSTLLADPNYVESFRKSVLDRMINDLLLEQHAESLGLRVSDSQVRS 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF  +++ + L R G +   + ++  + L R  ++            
Sbjct: 120 MIVDMPQFQ-VDGKFDQEIYQASLRRAGFSPDSFAEYLRRDLVRNQLLTAIQASDFSLEG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  + L+     + A+ S   +  ++ +  + Y  PE  +++Y+  
Sbjct: 179 EVEAQSKLLTQTREIKKVTLSLSDFASKAELSEQEINDYYTQNPERYTRPEQVKVAYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
              + +  I++S+++ +  Y+++ +KY S E R V  ++    ++ +A      L  G  
Sbjct: 239 SAQQLKDAIDVSDEQAKQYYQEHLDKYSSEEQRRVSHILIEGDDEAKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LAEE+           SLG   ++ + D +  ++ F+L K GD T ++   FGY I 
Sbjct: 299 FATLAEEKSDDFGSASEGGSLGWIERD-VMDPAFEEAAFALKKAGDVTGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K S    ++EV  +I  +++  +A ++  E   +LE        S+D+ +   K 
Sbjct: 358 KLDELKDSVAKPYEEVASEIKQELKDQQAIDQFYELQSQLETVAFEYPDSLDDAADAIKA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                  +  A       E+   P   Q +     K+D L+    + +     + V++++
Sbjct: 418 EIHTTDFISQA----DAPELLKAPAVMQAILSPEVKEDGLN-SEVIEVAPEHVIVVRVED 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           +       L+EV   V      VK  +     A+ LV E  K  K+            +T
Sbjct: 473 ARDETVLPLDEVREQVTTALAKVKGEQSAIKLADNLVAELKKGNKDL-----------MT 521

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-PVQ 585
            N +   D+EN          VFS                     VV ++TN K     Q
Sbjct: 522 ENGLAFSDSENIDRSSPLADVVFSMKKPSSGQVEFAQAKDFNGDIVVVELTNVKSDVNAQ 581

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             ++  + LTQM  +  L  +I  L+    + 
Sbjct: 582 YNEQIGTQLTQMNAQQDLSGLINILRKTIDIE 613


>gi|317492905|ref|ZP_07951329.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919027|gb|EFV40362.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 627

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 117/637 (18%), Positives = 258/637 (40%), Gaps = 25/637 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ V F++ G+   L   SG      V  Q++       + 
Sbjct: 1   MMDNLRAAANHVVLKIILGLIIVSFVLTGVGGYLTGGSG-DYAAKVDGQEISRGQLEQAV 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G   +           L K+ L+ L+    LDQ+ + +GL     +V  
Sbjct: 60  QSERSRLQQQLGDQFSVLAGNEGYMKELRKQALNRLIDDMLLDQYAKKLGLGISDEQVKE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +N+F +  ++S +A  G+    Y     + L+   ++  +        +
Sbjct: 120 AIWAMPYFQ-TNNQFDNAKYLSIIANMGLTPDNYAQLVRQQLTSQQLIQAYTATGFTLPV 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++       + R V    ++ + +      ++  L  ++E+ K+++ APE  ++SYI  
Sbjct: 179 EVEAMAALTMQQRDVRLATIDIKALEKDQKVTDEELKAYYEQNKNSFIAPEEVKVSYIEM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + K+ +S+DE+ A Y+++K  Y  PE +    +    + +A      L  G  F 
Sbjct: 239 DAAAIQDKVTVSDDEIAAYYDQHKSSYTQPERKDYSVIQVKTEADAKAVLDELNSGADFA 298

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           ++A E+   +        LG       PD  L      L  KG  +  +  S GY++  +
Sbjct: 299 KVAAEKSTDIISRKKGGELGWLEPGTTPDEILG---AKLTTKGQLSGAVKSSVGYLVVRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           ++IKP       EV+ DI  Q++  KA +      +++ +  +  +  + ++  E+   +
Sbjct: 356 NDIKPEQVKPLAEVRADIEAQVKQQKALDAFFALQQKVSD--SATSDNESLAGAEEAAGV 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  +D     +   P  + +    +FG++     +  V   +G     ++I   
Sbjct: 414 KATETGWFTRDNVPAAINFKPVTQAIFEGSLFGENGAPGSNSDVISVEGDRAFVIRISAH 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + +++V   + +  K  K  ++  ++ ++L+    + GK   +  K  G S    
Sbjct: 474 KPEAVKPMDQVKEQITEMVKRQKAIQQARTEGDKLLTAL-QAGKG-EEALKAAGISFGAE 531

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
             + R   + +    D +  + + P +    + +      + V+ ++   K G    +E 
Sbjct: 532 QTLTRASEDRQL--ADTVFAL-AQPKDNKPVYGLAQDRQDNIVLIQLDAVKSGHLSNEEL 588

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
             F S +         DS++  L++   + +     +
Sbjct: 589 KAFSSQMLTGSTGITFDSLMDNLRANAKIKLGSAASE 625


>gi|62179064|ref|YP_215481.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62126697|gb|AAX64400.1| peptidyl prolyl isomerase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 623

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 277/638 (43%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++QA Y+++ +++  PE      +    + +A     +L KG+ F 
Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L ++   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+      EV+ DIA +++  KA +      +++ +  A     + ++  E++  +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  +D   +E+   P  + +    + G++     +  +   DG     V++ E 
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L EV   V    K  K  ++    A +L++E  K GK+   + K  G S    
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKSAEAM-KAAGLSFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +   S P +    + + N +  + V+      K G  P  +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|224582290|ref|YP_002636088.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224466817|gb|ACN44647.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 623

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 127/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++QA Y+++ +++  PE      +    + +A     +L KG+ F 
Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L ++   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+      EV+ DIA +++  KA +      +++ +  A     + ++  E++  +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  +D   +E+   P  + +    + G++     +  +   DG     V++ E 
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L EV   V    K  K  ++    A +L++E  K GK    + K  G S    
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             +NR   +         +   S P +    + + N +  + V+      K G  P  +K
Sbjct: 530 KTLNRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|197248545|ref|YP_002145433.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197212248|gb|ACH49645.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 623

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 275/638 (43%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++QA Y+++ +++  PE      +    + +A     +L KG+ F 
Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L ++   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+      EV+ DIA +++  KA +      +++ +  A     + ++  E++  +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +   D   +E+   P  + +    + G++     +  +   DG     V++ E 
Sbjct: 412 KAVETGWFSHDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L EV   V    K  K  ++    A +L++E  K GK    + K  G S    
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +   S P +    + + N +  + V+      K G  P  +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|168237567|ref|ZP_02662625.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737891|ref|YP_002113483.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194713393|gb|ACF92614.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197289587|gb|EDY28950.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 623

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKARFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++QA Y+++ +++  PE      +    + +A     +L KG+ F 
Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L ++   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+      EV+ DIA +++  KA +      +++ +  A     + ++  E++  +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  +D   +E+   P  + +    + G++     +  +   DG     V++ E 
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L EV   V    K  K  ++    A +L++E  K GK    + K  G S    
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +   S P +    + + N +  + V+      K G  P  +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|295096773|emb|CBK85863.1| Parvulin-like peptidyl-prolyl isomerase [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 623

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 119/633 (18%), Positives = 263/633 (41%), Gaps = 21/633 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLIG-GGANYAAKVNGQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L ++ L+ L+  A LDQ+ + +GL     +V  
Sbjct: 60  AGERNRMQQQLGDQYSELAANEGYMKNLRQQTLNRLIDEALLDQYAKSLGLGISDEQVKK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +  F   + KF +  + S + + G+   +Y       L+   ++   VG       
Sbjct: 120 AIFSTQAFQS-NGKFDNARYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             ++      + R V    ++   + A    S+A +  ++E+ K+N+ +PE  R+SYI  
Sbjct: 179 ETEELAALVAQQRVVREATIDVNALAAKQQVSDAEVNAYYEQNKNNFISPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++    ++ E+Q+ Y+++++++  P+      +    + EA      L KG  F 
Sbjct: 239 DAAAMQENA--TDAEIQSYYDQHQDQFTQPQRNRYSVIQTKTEAEAKAVLDELNKGADFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+ +   +    +   +G   +   PD         L +KG  + VI  S G+++A +
Sbjct: 297 TLAKAKSTDIISAKNGGDMGWLEESTTPD---ELKNAGLKEKGQLSGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I  + T    +V+ DIA +++  KA +      +++ +  A     + ++  E+   +
Sbjct: 354 DDIVAAKTKPLADVRDDIAAKVKQEKALDAFYALQQKVSD--AASNDNESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +   +   +E+   P  + +    + G++     +  +   DG     +++ E 
Sbjct: 412 KAVETGWFSHENLPEELNFKPVSDAIFNGGLVGENGTPGSNSDIITVDGDRAFVLRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                + L EV   V    K  K A++    A +++ +  K GKN  D  K  G S    
Sbjct: 472 KAEAVKPLAEVKDQVVALVKHNKAAQQAKLDAEKILADL-KAGKN--DALKAAGLSFGEA 528

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
             ++R   +       G+S              ++  +  +      +   P  +K   +
Sbjct: 529 KTLSRTGQDPVSQAAFGLSLPAKDKPVYGTTTDMQGNVVLLALDEVKAGTLPDAQKKAMV 588

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
             +TQ   +   +++++ L+ +  + + D + Q
Sbjct: 589 QGITQNNAQIAFEAMMSNLRKEAKIKLGDVVTQ 621


>gi|16763833|ref|NP_459448.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|161615353|ref|YP_001589318.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167551732|ref|ZP_02345485.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167990436|ref|ZP_02571536.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231441|ref|ZP_02656499.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168240281|ref|ZP_02665213.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168261111|ref|ZP_02683084.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168818936|ref|ZP_02830936.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194442454|ref|YP_002039695.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194448749|ref|YP_002044487.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194469679|ref|ZP_03075663.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197262652|ref|ZP_03162726.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|200390757|ref|ZP_03217368.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|207855932|ref|YP_002242583.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|16418959|gb|AAL19407.1| peptidyl prolyl isomerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161364717|gb|ABX68485.1| hypothetical protein SPAB_03124 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401117|gb|ACF61339.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194407053|gb|ACF67272.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194456043|gb|EDX44882.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197240907|gb|EDY23527.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|199603202|gb|EDZ01748.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205323503|gb|EDZ11342.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205330915|gb|EDZ17679.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333949|gb|EDZ20713.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205340141|gb|EDZ26905.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205344153|gb|EDZ30917.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205350111|gb|EDZ36742.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206707735|emb|CAR32020.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261245735|emb|CBG23532.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992168|gb|ACY87053.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301157063|emb|CBW16547.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911485|dbj|BAJ35459.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084726|emb|CBY94517.1| putative protease maturation protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321226030|gb|EFX51081.1| Peptidyl-prolyl cis-trans isomerase ppiD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322713525|gb|EFZ05096.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323128772|gb|ADX16202.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987401|gb|AEF06384.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 623

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++QA Y+++ +++  PE      +    + +A     +L KG+ F 
Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L ++   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+      EV+ DIA +++  KA +      +++ +  A     + ++  E++  +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  +D   +E+   P  + +    + G++     +  +   DG     V++ E 
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L EV   V    K  K  ++    A +L++E  K GK    + K  G S    
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +   S P +    + + N +  + V+      K G  P  +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|322614730|gb|EFY11659.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618836|gb|EFY15724.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623543|gb|EFY20382.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322629158|gb|EFY25937.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631879|gb|EFY28633.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637384|gb|EFY34086.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322642069|gb|EFY38679.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647888|gb|EFY44363.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322653272|gb|EFY49605.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660579|gb|EFY56815.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664731|gb|EFY60924.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669216|gb|EFY65366.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322670761|gb|EFY66894.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322679000|gb|EFY75055.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682029|gb|EFY78054.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685142|gb|EFY81139.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323192964|gb|EFZ78187.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323196954|gb|EFZ82096.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203939|gb|EFZ88956.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323206976|gb|EFZ91929.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323214179|gb|EFZ98937.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214497|gb|EFZ99248.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219161|gb|EGA03658.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227003|gb|EGA11184.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230179|gb|EGA14299.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233917|gb|EGA18006.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238389|gb|EGA22447.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323244076|gb|EGA28085.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323246237|gb|EGA30220.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251863|gb|EGA35726.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257859|gb|EGA41538.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261127|gb|EGA44719.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264943|gb|EGA48442.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272506|gb|EGA55913.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 623

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKARFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++QA Y+++ +++  PE      +    + +A     +L KG+ F 
Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L ++   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+      EV+ DIA +++  KA +      +++ +  A     + ++  E++  +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  +D   +E+   P  + +    + G++     +  +   DG     V++ E 
Sbjct: 412 KAVETGWFSRDTLPEEMNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L EV   V    K  K  ++    A +L++E  K GK    + K  G S    
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +   S P +    + + N +  + V+      K G  P  +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEVQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|114707419|ref|ZP_01440315.1| peptidyl-prolyl cis-trans isomerase D [Fulvimarina pelagi HTCC2506]
 gi|114536978|gb|EAU40106.1| peptidyl-prolyl cis-trans isomerase D [Fulvimarina pelagi HTCC2506]
          Length = 629

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 167/629 (26%), Positives = 290/629 (46%), Gaps = 8/629 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  +RKA+  W AKI L +L + F +WG+ D +F     + V+SVG   VP + +  ++
Sbjct: 1   MLNSLRKATTGWTAKILLGLLVISFAVWGIGD-VFRSGNQNAVLSVGETDVPLAEYALTY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            Q    I++++G  +  E A + G+D+ +L  LVSGA L +   +IGL     R+   IA
Sbjct: 60  NQASSGIARQLGRPLTPEEAATFGIDQAVLSQLVSGAVLTEQARNIGLGISDERLARLIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F      FS   F + L +  + E +YI+       RT +V     G+       +
Sbjct: 120 DDPSFQDASGNFSRAQFRNLLNQARLRESDYIEFQEDAAMRTQIVDAVSNGITLPKAYEE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               F  E R+V YI +    + +  +PS+  L  +FE+ K +Y APEY+ ++       
Sbjct: 180 ALGLFNGERRNVSYISVGPGALESEPEPSDEALQAYFEENKQDYAAPEYRGLAVARLTRE 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
               +  I+++++ A+YE+ + +Y   E R V Q+VF ++  A EA + L  G  F  +A
Sbjct: 240 TIADESAITDEQVAADYEQYQSRYGEAERRQVSQIVFGDEAAATEAAEKLANGATFENVA 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
              GK+ +D ++G  ++E IPD S+ D+ F+L + G  + VI G FG  I  VS I+ + 
Sbjct: 300 RAAGKNPADTAIGLVTREDIPDPSIRDAAFAL-ESGQTSDVIDGRFGPTIVRVSEIQEAS 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
               +EV  DI   + +  AS+ +   Y+  E+  A G + +E ++   +       VD 
Sbjct: 359 VTPLEEVAGDIRRDLALNNASDTLNAAYQTYEDARASGATFEEATQEAGLKVETYEAVDS 418

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G++  G+ +  I     LL   F  + P   +  +   D  Y++  + +  PARDR L+
Sbjct: 419 QGRNPSGEAIEGISGNGDLLEEAFQTE-PGFDNIPITTEDNGYLFFDVTDIQPARDRTLD 477

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV   V  DW   +T   +  +    + E ++ GK+  +I +  G  + +   I R    
Sbjct: 478 EVRQQVVDDWTRDETL-RLVEERAAALAEEARGGKSLENIAEENGLEVASAVGITRQSGA 536

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD---KFISYLTQM 597
            +  G       F+     V        L  VV K+           +     I  +   
Sbjct: 537 GEI-GAQASQAAFASGQGSVAAAKGRGELEQVVLKIDEVAPPAAPLDNVNRTQIGQVQTG 595

Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
           +  DL+ S +  ++ +Y + ++ N I+  
Sbjct: 596 LTNDLVQSYVTRVQGEYPLQIYPNGIENA 624


>gi|16759432|ref|NP_455049.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142796|ref|NP_806138.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213160790|ref|ZP_03346500.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213425852|ref|ZP_03358602.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213646001|ref|ZP_03376054.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213850134|ref|ZP_03381032.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289829271|ref|ZP_06546883.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25320965|pir||AG0558 peptidylprolyl isomerase (EC 5.2.1.8) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16501723|emb|CAD08911.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138428|gb|AAO69998.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 623

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++QA Y+++ +++  PE      +    + +A     +L KG+ F 
Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L ++   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+      EV+ DIA +++  KA +      +++ +  A     + ++  E++  +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  +D   +E+   P  + +    + G++     +  +   DG     V++ E 
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L EV   V    K  K  ++    A +L++E  K GK    + K  G S    
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +   S P +    + + N +  + V+      K G  P  +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|168465546|ref|ZP_02699428.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195631887|gb|EDX50407.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 623

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGHMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++QA Y+++ +++  PE      +    + +A     +L KG+ F 
Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L ++   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+      EV+ DIA +++  KA +      +++ +  A     + ++  E++  +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDTYYALQQKVSD--AASNDNESLAGAEQVAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  +D   +E+   P  + +    + G++     +  +   DG     V++ E 
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L EV   V    K  K  ++    A +L++E  K GK    + K  G S    
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +   S P +    + + N +  + V+      K G  P  +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|325498268|gb|EGC96127.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia
           fergusonii ECD227]
          Length = 611

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/626 (19%), Positives = 265/626 (42%), Gaps = 28/626 (4%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           + KI   ++ V F++ G+S  L    G++    V  Q++    F N++  E   + Q++G
Sbjct: 1   MLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAFNSERNRMQQQLG 59

Query: 73  FVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
              +   +       L +++L+ L+  A LDQ+  D+ L     +V   I  +P F   D
Sbjct: 60  DQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQAIFATPAFQ-VD 118

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
            KF +  + + L + G++  +Y       L+   ++    G         D+      + 
Sbjct: 119 GKFDNSRYNAILNQMGMSADQYAQALRNQLTTQQLINGIAGTDFMLKGETDELAALVSQQ 178

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           R V    ++          S+A +T +++++K+N+  PE  R+SYI+ D      +  +S
Sbjct: 179 RVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRVSYIMLDAANI--QQPVS 236

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL-- 307
           + ++QA Y+++++++  P+      +    + EA     +L  G  F +LA+E+   +  
Sbjct: 237 DADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNGGDFAELAKEKSADIIS 296

Query: 308 --SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
             +   LG       P   L D+   L  KG  + VI  S G+++  + +++P+   +  
Sbjct: 297 ARNGGDLGWLEDSTTP-QELKDA--GLKDKGQLSGVIKSSVGFLVVRLDDVQPAKVKTLA 353

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           EV+ DIA +++  KA +      +++ +  A     + ++  E+   +      +  +  
Sbjct: 354 EVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVKAKETGWFSQQN 411

Query: 426 KGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVL 483
             +E+   P  + +    + G++     +  +   DG   +V ++ E      + L EV 
Sbjct: 412 LPEELNFKPVADAIFSGSLVGENGTPGSNSDIITVDGDRAFVLRVSEHKAEAIKPLSEVK 471

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
             VK   +  K  ++   +A +L++E  K GK   D  +  G        ++R   +   
Sbjct: 472 DQVKALVQHDKAEQQAKLEAEKLLVEL-KAGKGV-DAMRAAGLQFGEQKTLSRSGQD--- 526

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMN 599
                 +     P +    + +      + V+  V   K G  P  +K   +  +TQ   
Sbjct: 527 -PVSLAAFALGLPEKDKPSYGMATNTQGNVVLLAVDEVKAGTMPEAQKQALVQGITQNNA 585

Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQR 625
           + + +++++ L+ +  + + D L Q+
Sbjct: 586 QIVFEALMSNLRKEAKIKIGDALEQQ 611


>gi|198244647|ref|YP_002214406.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197939163|gb|ACH76496.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 623

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 275/638 (43%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q +  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQGISRAQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++QA Y+++ +++  PE      +    + +A     +L KG+ F 
Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L ++   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+      EV+ DIA +++  KA +      +++ +  A     + ++  E++  +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  +D   +E+   P  + +    + G++     +  +   DG     V++ E 
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L EV   V    K  K  ++    A +L++E  K GK    + K  G S    
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +   S P +    + + N +  + V+      K G  P  +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|182678431|ref|YP_001832577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634314|gb|ACB95088.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 640

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 155/639 (24%), Positives = 307/639 (48%), Gaps = 22/639 (3%)

Query: 1   MLEIIRKASRTWV----AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           MLE +R A+R W+      + + ++ + F+IWG+ D +F   G++T+  VG  ++   ++
Sbjct: 1   MLEAMRVATRGWIGRSLMTLVMGLIILSFIIWGVGD-MFRNLGANTLAKVGDTEITTQAY 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             ++   L  + ++    +  E AR +GLD++IL  L+  ATL+Q  + +GL      + 
Sbjct: 60  REAYSTILQRLQRQARRAITHEEARMLGLDRQILARLIGEATLNQEADKLGLALADSEIA 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             IA+  LF G +  F    F + L   G+ EK ++    ++L R  +    V G+    
Sbjct: 120 RIIAKDELFKGANGAFDRQRFEALLRDNGMTEKTFVREQHELLLRHMITDAVVTGLSVPK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
           ++L+    F  E R VD  +L    V  IA P+   L+++F      Y   E +++  + 
Sbjct: 180 IMLEMIHAFQTEARDVDTFLLPASSVGEIAAPTEDELSKYFADRAQAYATQERRKLLILS 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            D         I+ +++Q  Y+  K E++  PE R +EQ+ FP+   A +A Q L +G+ 
Sbjct: 240 LDPTTLAATQTIAPEDVQKLYDSVKAERFSVPEKRQIEQISFPDLATAGKARQRLDQGEN 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  L  +Q  S  D  LG+ ++  + D  +A++ F+L + G  +  I  +FG  +  +  
Sbjct: 300 FEALLADQHISAKDADLGTLARSDLIDQKIAEAAFALPE-GAVSQPIQDAFGAKLLRIVK 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I P+    F  V+  +  ++   KA +++   + ++E+  A G ++ E+++   + +  +
Sbjct: 359 IIPASVQPFASVEAGLKQELATAKARQEITGLHDKIEDLRASGKNLSEVAQSLGLKTQLI 418

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
             VD  G++ +G  +A +P    LL   F  D  +  D T+  P G ++W +++    AR
Sbjct: 419 ESVDAHGQNAQGAPIADLPNGPALLKAAFASDVGVDND-TLTTPQGGFVWFEVQGVDKAR 477

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG-ASLLTTNQI 534
            R LEE  ++V+  W+  +T  +++  A +L+ E    GK+  D+ ++ G   +     +
Sbjct: 478 RRTLEEARSEVEAAWRQDETNRKLALAAAELI-EQIDGGKSIADVARDHGNLEVRHVEGV 536

Query: 535 NRMD------NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
            R D         K    + ++Q+F+  V  V      +G   ++F+V ++KV P     
Sbjct: 537 TRADVQPTGNTPGKGLPPNVVTQIFNVGVHGVGSAADASG--RLIFQVQDAKVPPFDPAA 594

Query: 589 KFISYLTQ----MMNKDLLDSVIAYLKSQYSVTVHDNLI 623
             ++ + +     + +D+L   +A L+  +   V+   +
Sbjct: 595 PALTAIAKEADGGIKEDVLAQYVAKLQKDFGTKVNLQAL 633


>gi|238911417|ref|ZP_04655254.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
          Length = 623

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 275/638 (43%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQLVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++QA Y+++ +++  PE      +    + +A     +L KG+ F 
Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L ++   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+      EV+ DIA +++  KA +      +++ +  A     + ++  E++  +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +   D   +E+   P  + +    + G++     +  +   DG     V++ E 
Sbjct: 412 KAVETGWFSHDTLPEELNFKPVADAIFNGGLVGENGTPGLNSDIITVDGDRAFVVRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L EV   V    K  K  ++    A +L++E  K GK    + K  G S    
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +   S P +    + + N +  + V+      K G  P  +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|161504371|ref|YP_001571483.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160865718|gb|ABX22341.1| hypothetical protein SARI_02482 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 623

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/638 (19%), Positives = 274/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D +F ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGRFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V    ++   + A    ++  ++ ++++ K  +  PE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVREATIDVNALAAKQQATDQEVSSYYDQNKTRFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++QA Y+++ +++  PE      +    + +A     +L KG+ F 
Sbjct: 239 DAATM--QAPVSDADIQAYYDQHLDQFTQPERHRYSIIQTKTEDDAKAVLDALNKGEDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L ++   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P+      EV+ DIA +++  KA +      +++ +  A     + ++  E++  +
Sbjct: 354 DDVQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +   D   +E+   P  + +    + G++     +  +   DG     V++ E 
Sbjct: 412 KAVETGWFSHDNLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L  V   V    K  K  ++    A +L++E  K GK    + K  G S    
Sbjct: 472 KPEAVKPLAAVKEQVIALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +   S P +    + + N +  + V+  +   K G  P  +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNIVLLALDEVKAGSMPEAQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMMQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|205351763|ref|YP_002225564.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205271544|emb|CAR36362.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326626798|gb|EGE33141.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 623

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNLLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++QA Y+++ +++  PE      +    + +A     +L KG+ F 
Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L ++   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+      EV+ DIA +++  KA +      +++ +  A     + ++  E++  +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  +D   +E+   P  + +    + G++     +  +   DG     V++ E 
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L EV   V    K  K  ++    A +L++E  K GK    + K  G S    
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +   S P +    + + N +  + V+      K G  P  +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|56414392|ref|YP_151467.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363312|ref|YP_002142949.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128649|gb|AAV78155.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094789|emb|CAR60322.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 623

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKSRFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++QA Y+++ +++  PE      +    + +A     +L KG+ F 
Sbjct: 239 DAATM--QALVSDADIQAYYDQHLDQFTQPERTRYSIIQTKTEDDAKAVLDALNKGEDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L ++   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P+      EV+ DIA +++  KA +      +++ +  A     + ++  E++  +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  +D   +E+   P  + +    + G++     +  +   DG     V++ E 
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L EV   V    K  K  ++    A +L++E  K GK    + K  G S    
Sbjct: 472 KPEAAKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +         +   S P +    + + N +  + V+      K G  P  +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623


>gi|51595313|ref|YP_069504.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia
           pseudotuberculosis IP 32953]
 gi|153948580|ref|YP_001402048.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia
           pseudotuberculosis IP 31758]
 gi|170025447|ref|YP_001721952.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pseudotuberculosis
           YPIII]
 gi|186894330|ref|YP_001871442.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pseudotuberculosis
           PB1/+]
 gi|51588595|emb|CAH20203.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
           outer membrane proteins [Yersinia pseudotuberculosis IP
           32953]
 gi|152960075|gb|ABS47536.1| peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis IP
           31758]
 gi|169751981|gb|ACA69499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           pseudotuberculosis YPIII]
 gi|186697356|gb|ACC87985.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 628

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 121/638 (18%), Positives = 268/638 (42%), Gaps = 25/638 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+   L   S       V  Q +  +    + 
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DYAAKVNDQDISRAQLEQAM 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E G + QK+G   +   +       L +++L  L++   LDQ+   +GL     +V  
Sbjct: 60  QSERGRLQQKLGEQFSVLAANEGYMQQLRQQVLGQLINNVLLDQYARKLGLTVSDEQVKE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I + P F   ++ F ++ +++ + + G   +++     + L    ++  F        +
Sbjct: 120 SIRQIPDFQTGEH-FDNNRYLALINQLGYTPEQFAQLQRQQLINQQLLKAFSDTGFVLPI 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +        + R V    L+ + + A    ++  L  ++++ K N+ APE  ++S+I  
Sbjct: 179 EVQAMSALVLQQRDVRLATLDLKALQAEQKVTDEELQAYYDQNKHNFIAPEQMKVSFIAM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    +  I ++ +++ A Y++N+  Y  PE R    + F  + EA  A   LKKG  F 
Sbjct: 239 DAAAMQSNITVTEEDIAAYYDQNRSSYTQPERRNYSVIQFKTEAEAKAALDELKKGADFA 298

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            +A+E+   +    +   LG    E  PD        +L++KG  + VI  S GY+I  +
Sbjct: 299 VIAKEKSTDIISRNNGGELGWLEPETTPD---EVKAANLSEKGQLSDVIKSSVGYLIVRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           ++IKP       EV  ++A +++  KA +      +++ +  A  +  + ++  E++   
Sbjct: 356 NDIKPELVKPLSEVHDELAKKLKQEKALDAYYALQQKVND--AATSDNESLASAEEVAGT 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  +D    E+   P  + +   R+ G++     +  V   DG     ++I   
Sbjct: 414 KAQQTGWFTRDTVPAEINFKPVVQAIFDGRLVGENGSAGSNSEVITVDGDRAFVIRIDGH 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P      ++V   + +  K  K  ++      +++    K+GK   +  K+ G S    
Sbjct: 474 KPEGIEPFDQVRDQISELVKRQKAEQQARVDGEKILTAL-KQGKG-EEAMKSAGISFGEK 531

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVGPVQEKDK 589
             ++    +++           + P +    + +      + V+ ++ +   G +QE + 
Sbjct: 532 KTLSYASVDDQLMQTIF---ALAHPQKDQPVYGLSQDRQGNIVLIELLSVTPGKLQESET 588

Query: 590 --FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             FI  + +     + D+++A L  Q ++ +     Q+
Sbjct: 589 KIFIEKMQEESVSMIFDALMANLHKQATIKIGPAEQQQ 626


>gi|290510114|ref|ZP_06549484.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. 1_1_55]
 gi|289776830|gb|EFD84828.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. 1_1_55]
          Length = 624

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 121/638 (18%), Positives = 274/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G +    V  Q++    F N+ 
Sbjct: 1   MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       + +++L+ L+  + LDQ+  ++GL     +V  
Sbjct: 60  ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++  F   + KF +  F   +A+ G+   +Y       L+   ++    G       
Sbjct: 120 AIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             DQ      + R V    +N   + A    S+  +  ++++ +  + APE  R+SYI  
Sbjct: 179 ESDQLAALVSQQRVVREATINVNALAAKQTVSDEEINAFWQQNQARFMAPEQFRVSYIKM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++    S++E+Q+ Y+++K+++  P+      +    + +A      L+KG  F 
Sbjct: 239 DAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L D+   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWMEEASTV-PELKDA--GLNEKGQLSGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P+      +V+ DIA +++  KA +      +++ +  A     + ++   ++  +
Sbjct: 354 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAAQVAGL 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
            +    + G+D   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                + L EV   V    K  K  ++    A++L+    K+GK   +  K  G S    
Sbjct: 472 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLDADKLLAAL-KDGKG-DEAMKAAGLSFGAP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +        ++     P +    + + + +    V+  +   K G  P ++K
Sbjct: 530 QTLSRTGQD----PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGNMPEEQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   +   +++++ L+    + + D++ Q+
Sbjct: 586 KAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623


>gi|330011537|ref|ZP_08307123.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. MS 92-3]
 gi|328534154|gb|EGF60789.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. MS 92-3]
          Length = 639

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/638 (19%), Positives = 274/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G +    V  Q++    F N+ 
Sbjct: 16  MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 74

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       + +++L+ L+  + LDQ+  ++GL     +V  
Sbjct: 75  ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 134

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++  F   + KF +  F   +A+ G+   +Y       L+   ++    G       
Sbjct: 135 AIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 193

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             DQ      + R V    +N   + A    S+  +  ++++ +  + APE  R+SYI  
Sbjct: 194 ESDQLAALVSQQRVVREATINVNALAAKQTASDEEINVFWQQNQARFMAPEQFRVSYIKM 253

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++    S+DE+Q+ Y+++K+++  P+      +    + +A      L+KG  F 
Sbjct: 254 DAASMQESA--SDDEIQSWYDQHKDQFTQPQRSRYSVIQTKTEADAKAVLAELQKGADFA 311

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G           L D+   L +KG  + VI  S G+++A +
Sbjct: 312 TLAKEKSTDIISARNGGDMGWMEDASTV-PELKDA--GLKEKGQLSGVIKSSVGFLVARL 368

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P+      +V+ DIA +++  KA +      +++ +  A     + ++   ++  +
Sbjct: 369 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLASAAQVAGL 426

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
            +    + G+D   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 427 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 486

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                + L EV   V    K  K  ++   +A++L+    K+GK   +  K  G S    
Sbjct: 487 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLEADKLLAAL-KDGKG-DEAMKAAGLSFGAP 544

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +        ++     P +    + + + +    V+  +   K G  P ++K
Sbjct: 545 QTLSRTGQD----PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGSMPEEQK 600

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   +   +++++ L+    + + D++ Q+
Sbjct: 601 KAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 638


>gi|299134975|ref|ZP_07028166.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
 gi|298589952|gb|EFI50156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
          Length = 617

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 154/619 (24%), Positives = 283/619 (45%), Gaps = 13/619 (2%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +   +L V F +WG++D +F  S  +T+ +VG   +P   F +++  +L  IS++I   +
Sbjct: 3   VLFGILIVSFAVWGIAD-IFKGSTQTTLATVGNTDIPLEQFRSAYTDKLQQISRQIRRPL 61

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
              + R+ G+D+++L   ++   LD+    +GL      +   I+  P F G + KF   
Sbjct: 62  TPTQGRAFGIDRQLLQQTIAETALDEEGRRMGLRMSDAEIVRTISSDPTFAGPNGKFDPA 121

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
            F   +      E+ YI    ++  R +++G  V G+ P+   ++   RF  E R++DY 
Sbjct: 122 RFAMAMRDYSYTEQRYIAEQRRLTLRRELIGSIVAGVEPTKTQIEAISRFQDEQRTIDYA 181

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
            +       I  PS   L  +FE +K  +RAPEY+++ Y+     E  KK+ +S+D+ + 
Sbjct: 182 KIGPDQAGTIEAPSPDALNTYFEAHKAQFRAPEYRKVVYLTLSPDELAKKVVVSDDDARK 241

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
            Y+  +  Y  P+ R V+Q+ F ++  A  A   +  G  F  LA++   +  D++LG  
Sbjct: 242 VYDSRRADYVKPDRREVQQIAFQSEDAAKAARAKIAGGMSFEDLAKDMKLTSGDMNLGLV 301

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           S++ + D  +A + F+L    + +  + G+   V+  V+ I+P  T +F++V   I  ++
Sbjct: 302 SEKSLGDPIIAKAAFALPLN-EVSQPVKGALATVLLKVTKIEPGSTEAFEKVAPAIKKEI 360

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
              +      +    +E+  + G S+ E +++  + +  +  VD +G+   GKE AA+P 
Sbjct: 361 AEQRVRTDFDKMRNAVEDERSGGASIAEAAQKSGLEATTVD-VDRSGRTPDGKE-AALPK 418

Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
              L+   FG D  +  D       G  +W  +    P+RDR L+EV   V   W+  + 
Sbjct: 419 GVDLITAAFGSDVGVDNDPL--TFPGGEVWFDVLGITPSRDRTLDEVKDQVTARWRDEQV 476

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
           A  + +KA +LV + +K G  F    K  G +  T+    R D  N       +   F  
Sbjct: 477 ATRLRAKAKELVEKINKGG-VFATEVKAAGLTTQTSTPFKREDKVNG-LPDIVVDTAFRT 534

Query: 556 PVEMVKCFP-IENGLSYVVFKVTNSKVGPV----QEKDKFISYLTQMMNKDLLDSVIAYL 610
                     I      VVF+VTN     V        K    L Q ++ + +   I +L
Sbjct: 535 AKGSAAMAENIPASSGVVVFQVTNVATPAVDLNSDASKKMKEGLAQNLSDEQIGQYITHL 594

Query: 611 KSQYSVTVHDNLIQRYLDG 629
           ++   V V++N+       
Sbjct: 595 ETTLGVKVNENVFAIATGA 613


>gi|22124938|ref|NP_668361.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
           KIM 10]
 gi|45440627|ref|NP_992166.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108808639|ref|YP_652555.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
           Antiqua]
 gi|108811102|ref|YP_646869.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
           Nepal516]
 gi|145600047|ref|YP_001164123.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
           Pestoides F]
 gi|149365001|ref|ZP_01887036.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CA88-4125]
 gi|162420506|ref|YP_001607415.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Angola]
 gi|165926634|ref|ZP_02222466.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936039|ref|ZP_02224609.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010989|ref|ZP_02231887.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212996|ref|ZP_02239031.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399316|ref|ZP_02304840.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421506|ref|ZP_02313259.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423714|ref|ZP_02315467.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468476|ref|ZP_02333180.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis FV-1]
 gi|218930183|ref|YP_002348058.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
           CO92]
 gi|229838757|ref|ZP_04458916.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896089|ref|ZP_04511259.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides A]
 gi|229899325|ref|ZP_04514468.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901331|ref|ZP_04516453.1| Peptidyl-prolyl cis-trans isomerase ppiD [Yersinia pestis Nepal516]
 gi|270489517|ref|ZP_06206591.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
 gi|294504885|ref|YP_003568947.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Z176003]
 gi|21957777|gb|AAM84612.1|AE013706_7 putative protease maturation protein [Yersinia pestis KIM 10]
 gi|45435484|gb|AAS61043.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774750|gb|ABG17269.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Nepal516]
 gi|108780552|gb|ABG14610.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Antiqua]
 gi|115348794|emb|CAL21748.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CO92]
 gi|145211743|gb|ABP41150.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides F]
 gi|149291414|gb|EDM41488.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CA88-4125]
 gi|162353321|gb|ABX87269.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis Angola]
 gi|165916184|gb|EDR34791.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921562|gb|EDR38759.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989989|gb|EDR42290.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205783|gb|EDR50263.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960425|gb|EDR56446.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051820|gb|EDR63228.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057884|gb|EDR67630.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681260|gb|EEO77354.1| Peptidyl-prolyl cis-trans isomerase ppiD [Yersinia pestis Nepal516]
 gi|229687727|gb|EEO79800.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695123|gb|EEO85170.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701012|gb|EEO89041.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides A]
 gi|262362950|gb|ACY59671.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis D106004]
 gi|262366870|gb|ACY63427.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis D182038]
 gi|270338021|gb|EFA48798.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
 gi|294355344|gb|ADE65685.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Z176003]
 gi|320016339|gb|ADV99910.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 628

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 121/638 (18%), Positives = 268/638 (42%), Gaps = 25/638 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+   L   S       V  Q +  +    + 
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DYAAKVNDQDISRAQLEQAM 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E G + QK+G   +   +       L +++L  L++   LDQ+   +GL     +V  
Sbjct: 60  QSERGRLQQKLGEQFSVLAANEGYMQQLRQQVLGQLINNVLLDQYARKLGLTVSDEQVKE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I + P F   ++ F ++ +++ + + G   +++     + L    ++  F        +
Sbjct: 120 SIRQIPDFQTGEH-FDNNRYLALINQLGYTPEQFAQLQRQQLINQQLLKAFSDTGFVLPI 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +        + R V    L+ + + A    ++  L  ++++ K N+ APE  ++S+I  
Sbjct: 179 EVQAMSALVLQQRDVRLATLDLKALQAEQKVTDEELQAYYDQNKHNFIAPEQMKVSFIAM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    +  I ++ +++ A Y++N+  Y  PE R    + F  + EA  A   LKKG  F 
Sbjct: 239 DAAAMQSNITVTEEDIAAYYDQNRSSYTQPERRNYSVIQFKTEVEAKAALDELKKGADFA 298

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            +A+E+   +    +   LG    E  PD        +L++KG  + VI  S GY+I  +
Sbjct: 299 VIAKEKSTDIISRNNGGELGWLEPETTPD---EVKAANLSEKGQLSDVIKSSVGYLIVRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           ++IKP       EV  ++A +++  KA +      +++ +  A  +  + ++  E++   
Sbjct: 356 NDIKPELVKPLSEVHDELAKKLKQEKALDAYYALQQKVND--AATSDNESLASAEEVAGT 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  +D    E+   P  + +   R+ G++     +  V   DG     ++I   
Sbjct: 414 KAQQTGWFTRDTVPAEINFKPVVQAIFDGRLVGENGSAGSNSEVITVDGDRAFVIRIDGH 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P      ++V   + +  K  K  ++      +++    K+GK   +  K+ G S    
Sbjct: 474 KPEGIEPFDQVRDQISELVKRQKAEQQARVDGEKILTAL-KQGKG-EEAMKSAGISFGEK 531

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVGPVQEKDK 589
             ++    +++           + P +    + +      + V+ ++ +   G +QE + 
Sbjct: 532 KTLSYASVDDQLMQTIF---ALAHPQKDQPVYGLSQDRQGNIVLIELLSVTPGKLQESET 588

Query: 590 --FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             FI  + +     + D+++A L  Q ++ +     Q+
Sbjct: 589 KIFIEKMQEESVSMIFDALMANLHKQATIKIGPAEQQQ 626


>gi|323138293|ref|ZP_08073365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp.
           ATCC 49242]
 gi|322396545|gb|EFX99074.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp.
           ATCC 49242]
          Length = 635

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 172/641 (26%), Positives = 306/641 (47%), Gaps = 18/641 (2%)

Query: 1   MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           MLE +R AS+ W+ +    + + V+ V F IWG+ D    ++ S  V  VG  +V   SF
Sbjct: 1   MLEGLRVASQNWIGRTIMAVVMGVIVVSFAIWGVGDVFRGMTTSRLV-KVGSGEVSVDSF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            N+++ EL  I Q++   V ++ AR  GLD ++L+ L++   LDQ    +GL +      
Sbjct: 60  RNAYQNELRRIQQRLRRAVTNQEARQAGLDLQVLERLITEVALDQKARQLGLASSDETTQ 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             +A+  +  G D KF  + F       G  E+ ++        R  +  +   G+ P  
Sbjct: 120 QLLAKEKVLQGPDGKFDVERFKQIARDAGFTERGFVADQKSAYLRKLLTDLVTNGVEPPR 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
           L+++   RF  E+R++DY VL        + PS+  L ++F++ +  +RA EY++++ ++
Sbjct: 180 LMIEAIHRFRNESRTIDYFVLPVSAAGPASTPSDEELKKYFDEREQTFRAKEYRKLTALV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                  K  E++ DE++  YE++K  ++ +PE R V Q+V    KEA++A   LK G  
Sbjct: 240 VSPTSVGKPGEVTEDEVRKLYEESKARRFGTPEKRDVRQIVLKTDKEAEDALARLKGGMD 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              LA E   +  D++LG   +    D  +  ++F+LAK G     +  +FG VI+ V +
Sbjct: 300 IDALAAELKLNPKDVNLGLVEQRDFGDAKVGAAVFALAKPG-LAEPVKTAFGTVISQVKS 358

Query: 356 IKPSF-TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           I P+  T +F++   ++  ++   KA  +V+  +  +E+  A G ++ E ++   +    
Sbjct: 359 IAPAVYTKTFEQAAPELRVEIAAQKAGPEVRRLHDAIEDQRAAGKTLAETAKGVGLDVRV 418

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           +  VD AG D  GK +A +P    LL   F  D  +  D TVA  DG Y+W ++    PA
Sbjct: 419 IEAVDDAGHDKDGKAIADLPAGPDLLKAAFASDVGVDND-TVATRDGGYVWFEVNAVEPA 477

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           R +  EEV   V +  +     + ++ KA++LV +  + G+   D+ K++ A +     +
Sbjct: 478 RQKTFEEVKGAVLEAMRNEAAQKALAEKADELVGKL-RSGQPIEDVAKSVNAEVKRATDV 536

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKF 590
            R    +  F    I Q F  P       P + G   +VF V +S          E    
Sbjct: 537 KRAARPD--FNNPTIVQFFDVPPRGAGSLPGDAG--RLVFFVKDSTAPAFDPLSIESKTI 592

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
              L   ++ DLL+  +  L+   +V ++   ++     EK
Sbjct: 593 AEQLRPALHNDLLEQFVGGLEKALNVEINQKALEAATGTEK 633


>gi|195936005|ref|ZP_03081387.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           O157:H7 str. EC4024]
          Length = 608

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 118/622 (18%), Positives = 258/622 (41%), Gaps = 28/622 (4%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
              ++ V F++ G+S  L    G++    V  Q++    F N++  E   + Q++G   +
Sbjct: 2   IFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLGDQYS 60

Query: 77  ---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
              +       L +++L+ L+  A LDQ+  ++ L     +V   I  +P F   D KF 
Sbjct: 61  ELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQ-VDGKFD 119

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           +  +   L + G+   +Y       L+   ++    G         D+      + R V 
Sbjct: 120 NSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRVVR 179

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
              ++   + A    +   +  ++E+ K+N+  PE  R+SYI  D      +  +S+ +L
Sbjct: 180 EATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATM--QQPVSDADL 237

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SD 309
           Q+ Y+++++++  P+      +    + EA      L KG  F  LA+E+   +    + 
Sbjct: 238 QSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNG 297

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             +G      IPD         L +KG  + VI  S G++I  + +I+P+   S  EV+ 
Sbjct: 298 GDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRD 354

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
           D+A +++  KA +      +++ +  A     + ++  E+   +      +  K+   +E
Sbjct: 355 DVAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVKATQTGWFSKENLPEE 412

Query: 430 VAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVLTDVK 487
           +   P  + +    + G++     +  +   DG   +V +I E  P   + L +V   VK
Sbjct: 413 LNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVK 472

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
              +  K  ++    A +L+++  K GK    + +  G        ++R   +       
Sbjct: 473 ALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRSGRD----PIS 526

Query: 548 GISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLL 603
             +     P +    + +   +  + V+  +   K G  P  +K   +  +TQ   + + 
Sbjct: 527 QAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVF 586

Query: 604 DSVIAYLKSQYSVTVHDNLIQR 625
           +++++ L+ +  + + D L Q+
Sbjct: 587 EALMSNLRKEAKIKIGDALEQQ 608


>gi|206578972|ref|YP_002240079.1| peptidylprolyl isomerase [Klebsiella pneumoniae 342]
 gi|206568030|gb|ACI09806.1| peptidylprolyl isomerase [Klebsiella pneumoniae 342]
          Length = 624

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 120/638 (18%), Positives = 273/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G +    V  Q++    F N+ 
Sbjct: 1   MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       + +++L+ L+  + LDQ+  ++GL     +V  
Sbjct: 60  ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++  F   + KF +  F   +A+ G+   +Y       L+   ++    G       
Sbjct: 120 AIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             DQ      + R V    +N   + A    S+  +  ++++ +  + APE  R+SYI  
Sbjct: 179 ESDQLAALVSQQRVVREATINVNTLAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++    S++E+Q+ Y+++K+++  P+      +    + +A      L+KG  F 
Sbjct: 239 DAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L D+   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWMEEASTV-PELKDA--GLKEKGQLSGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P+      +V+ DIA +++  KA +      +++ +  A     + ++   ++  +
Sbjct: 354 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAAQVAGL 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
            +    + G+D   +E+   P  + +    + G++     +  +   DG     ++I E 
Sbjct: 412 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                + L EV   V    K  K  ++    A++L+    K+GK   +  K  G S    
Sbjct: 472 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLDADKLLAAL-KDGKG-DEAMKAAGLSFGAP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +        ++     P +    + + + +    V+  +   K G  P ++K
Sbjct: 530 QTLSRTGQD----PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGNMPEEQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   +   +++++ L+    + + D++ Q+
Sbjct: 586 KAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623


>gi|330829914|ref|YP_004392866.1| peptidylprolyl cis-trans isomerase D [Aeromonas veronii B565]
 gi|328805050|gb|AEB50249.1| Peptidylprolyl cis-trans isomerase D [Aeromonas veronii B565]
          Length = 637

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 128/637 (20%), Positives = 258/637 (40%), Gaps = 31/637 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ ++  VAK+ L ++ + F + G+   L   + ++   +V   ++  ++  N++
Sbjct: 2   MLDKLREGAQGKVAKVILGLIILSFALAGVGSYLNGPARTAP-ATVNGTEISAAALENAY 60

Query: 61  KQELGMISQKIGFVVNSERA---RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   A         + +LD L+  A LD    ++GL     ++  
Sbjct: 61  RNERARMESQMGEAFSQLAANPDYMKQFRRGVLDRLIDQALLDSKARELGLRISDEQIKQ 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  ++ KF++D ++  + R G+  + + D   + + R  ++   +G       
Sbjct: 121 AIVAMPEF-AENGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMSALLGTEFSLKG 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +Q  + Y + R +  + L   +  A    S+  L Q+++     +   E  ++ Y+L 
Sbjct: 180 EAEQLDKLYNQTRDLRLVRLAAANYMADVQVSDNELEQYYKTNGARFMNDEQVKVDYLLL 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290
           D     K I+++  + Q  Y+++++ +   E R V  ++ P        +++A+      
Sbjct: 240 DAANLAKDIKVTEQDAQDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEQKAEAVLAKA 299

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           K G  F  LA+              L  F K  + D +   + F+L K GD + V+   F
Sbjct: 300 KAGDDFAALAKADSSDTFSAKKGGELDWFEKG-VMDPAFEKAAFALNKAGDLSTVVKSPF 358

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ I  +  ++ + T  F +VK++   +++  KA EK   + +++ +  +   + D +  
Sbjct: 359 GFHIIKLLGVEAAQTKPFADVKEETITRLQADKAKEKFFAEQQKMAD--SSFENPDSLDL 416

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
               + + +   DF  +      +   P    + F    +DD  + D  + L DG  + +
Sbjct: 417 TADAMGMKVQSSDFFTQATAPAPLND-PKVLSVAFSEQLRDDNTNSD-VIELADGKALVL 474

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
            I    P   + L EV   V    K  K +E    KA  L L+  K G++       LG 
Sbjct: 475 HITGHKPKAVKPLAEVKEQVIAAIKHDKASEVARGKAQGL-LDKLKVGESITADLTALGL 533

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGP-----VEMVKCFPIENGLSYVV-FKVTNSK 580
            + T   + R D E      + I+Q F+ P        V      NG   VV     N  
Sbjct: 534 KVETHKGVARFDRE---LDQNLIAQAFTLPHPIDGKPSVALVAETNGDRVVVALDKVNVP 590

Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                      + L Q   +    S+I  L+    + 
Sbjct: 591 AAASGMAAMLQAQLGQGKAQVDYKSLIDELRKAAKIE 627


>gi|288936830|ref|YP_003440889.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
           At-22]
 gi|288891539|gb|ADC59857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
           At-22]
          Length = 624

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 120/638 (18%), Positives = 273/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G +    V  Q++    F N+ 
Sbjct: 1   MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       + +++L+ L+  + LDQ+  ++GL     +V  
Sbjct: 60  ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++  F   + KF +  F   +A+ G+   +Y       L+   ++    G       
Sbjct: 120 AIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             DQ      + R V    +N   + A    S+  +  ++++ +  + APE  R+SYI  
Sbjct: 179 ESDQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++    S++E+Q+ Y+++K+++  P+      +    + +A      L+KG  F 
Sbjct: 239 DAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L D+   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWMEEASTV-PELKDA--GLKEKGQLSGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P+      +V+ DIA +++  KA +      +++ +  A     + ++   ++  +
Sbjct: 354 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAAQVAGL 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
            +    + G+D   +E+   P  + +    + G++     +  +   DG     ++I E 
Sbjct: 412 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                + L EV   V    K  K  ++    A++L+    K+GK   +  K  G S    
Sbjct: 472 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLDADKLLAAL-KDGKG-DEAMKAAGLSFGAP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +        ++     P +    + + + +    V+  +   K G  P ++K
Sbjct: 530 QTLSRTGQD----PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGNMPEEQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   +   +++++ L+    + + D++ Q+
Sbjct: 586 KAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623


>gi|152968976|ref|YP_001334085.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238893390|ref|YP_002918124.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150953825|gb|ABR75855.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238545706|dbj|BAH62057.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 624

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 121/638 (18%), Positives = 274/638 (42%), Gaps = 28/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G +    V  Q++    F N+ 
Sbjct: 1   MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       + +++L+ L+  + LDQ+  ++GL     +V  
Sbjct: 60  ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++  F   + KF +  F   +A+ G+   +Y       L+   ++    G       
Sbjct: 120 AIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             DQ      + R V    +N   + A    S+  +  ++++ +  + APE  R+SYI  
Sbjct: 179 ESDQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++    S++E+Q+ Y+++K+++  P+      +    + +A      L+KG  F 
Sbjct: 239 DAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G           L D+   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWMEDASTV-PELKDA--GLKEKGQLSGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P+      +V+ DIA +++  KA +      +++ +  A     + ++   ++  +
Sbjct: 354 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLASAAQVAGL 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
            +    + G+D   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                + L EV   V    K  K  ++   +A++L+    K+GK   +  K  G S    
Sbjct: 472 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLEADKLLAAL-KDGKG-DEAMKAAGLSFGAP 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +        ++     P +    + + + +    V+  +   K G  P ++K
Sbjct: 530 QTLSRTGQD----PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGSMPEEQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   +   +++++ L+    + + D++ Q+
Sbjct: 586 KAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623


>gi|262042477|ref|ZP_06015636.1| peptidylprolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040181|gb|EEW41293.1| peptidylprolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 638

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 121/638 (18%), Positives = 274/638 (42%), Gaps = 29/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G +    V  Q++    F N+ 
Sbjct: 16  MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 74

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       + +++L+ L+  + LDQ+  ++GL     +V  
Sbjct: 75  ASERNRM-QQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 133

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++  F   + KF +  F   +A+ G+   +Y       L+   ++    G       
Sbjct: 134 AIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 192

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             DQ      + R V    +N   + A    S+  +  ++++ +  + APE  R+SYI  
Sbjct: 193 ESDQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKM 252

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++    S++E+Q+ Y+++K+++  P+      +    + +A      L+KG  F 
Sbjct: 253 DAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFA 310

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G           L D+   L +KG  + VI  S G+++A +
Sbjct: 311 TLAKEKSTDIISARNGGDMGWMEDASTV-PELKDA--GLKEKGQLSGVIKSSVGFLVARL 367

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P+      +V+ DIA +++  KA +      +++ +  A     + ++   ++  +
Sbjct: 368 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLASAAQVAGL 425

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
            +    + G+D   +E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 426 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 485

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                + L EV   V    K  K  ++   +A++L+    K+GK   +  K  G S    
Sbjct: 486 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLEADKLLAAL-KDGKG-DEAMKTAGLSFGAP 543

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
             ++R   +        ++     P +    + + + +    V+  +   K G  P ++K
Sbjct: 544 QTLSRTGQD----PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGSMPEEQK 599

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
              +  +TQ   +   +++++ L+    + + D++ Q+
Sbjct: 600 KAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 637


>gi|323495052|ref|ZP_08100141.1| peptidyl-prolyl cis-trans isomerase D [Vibrio brasiliensis LMG
           20546]
 gi|323310709|gb|EGA63884.1| peptidyl-prolyl cis-trans isomerase D [Vibrio brasiliensis LMG
           20546]
          Length = 619

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 131/628 (20%), Positives = 268/628 (42%), Gaps = 26/628 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   +   S  ++   VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSN-NSAAKVGNVEIGRGEFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ +      K +LD +V+   L+Q  E +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLLEQHAESLGLRVSDSQVRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF  +++ + L R G + + + ++  + L R  ++    G       
Sbjct: 120 LILEMPQFQ-VDGKFDQEIYQTALRRAGFSAESFAEYLRRDLVRNQLMTAIQGSDFALPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  + L+     A A+ S   ++ ++++  + Y  PE  +++Y+  
Sbjct: 179 EVEAQSKLLTQTRDIKKVTLSLADFAAKAELSEQEISDYYQQNPERYTRPEQVKVAYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
              + ++ IEIS+++ +  Y+++ +KY S E R V  ++    +Q +A      L  G  
Sbjct: 239 SAQQLKENIEISDEQAEKYYQEHIDKYSSEEQRRVSHILIEGDDQAKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LAEE+           SLG   ++ + D S  ++ F+L K G+ T ++   FGY I 
Sbjct: 299 FATLAEEKSDDFGSASEGGSLGWIERD-VMDPSFEEAAFALTKVGETTGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K S    +QEV  +I  +++  +A ++  E    LE+       S+D+ ++    
Sbjct: 358 KLDELKDSVAKPYQEVAAEIKQELKDQQAIDQYYELQSELEKVAFEYPDSLDDAAKAINA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                  +      V   E+   P   Q +     K+D L+    + +     + V++++
Sbjct: 418 EIHTTDFISQ----VDAPELLKTPAVLQAIVSPEVKEDGLN-SEVIEVAPEHVIVVRVED 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           S       LE+V +DV K    VK  +     A  LV E  KEGK  +D+    G +   
Sbjct: 473 SRDETVLPLEQVRSDVTKALANVKGEQTAIELAQNLVAEL-KEGK--QDLLSESGLAFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDK 589
           T  ++R         +  +  V  G V   +   +      VV ++T        Q   +
Sbjct: 530 TETLDRSSPLADVV-FSMVKPV-DGGVGFAQAKDLNG--DIVVVELTKVASDFDPQYNQQ 585

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             + L+Q+  +  L  +I+ L+    + 
Sbjct: 586 IGAQLSQVNAQQDLTGLISILRKTIDIE 613


>gi|163868048|ref|YP_001609252.1| peptidyl-prolyl cis-trans isomerase D [Bartonella tribocorum CIP
           105476]
 gi|161017699|emb|CAK01257.1| peptidyl-prolyl cis-trans isomerase D [Bartonella tribocorum CIP
           105476]
          Length = 628

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 155/636 (24%), Positives = 318/636 (50%), Gaps = 17/636 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML++IR A+ +W+ +IFL +L + F++ WG+            +++ G+  +    +  +
Sbjct: 1   MLDVIRSAANSWIFRIFLAILLLCFILLWGIPQ--LHTKSERDLITSGKSIITIDDYRLA 58

Query: 60  WKQELGMISQK--IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              +   ++Q   +G +      +   +   + + L     LD+    + +      +  
Sbjct: 59  LADQSARLAQAAHLGRMFTPNEMQQYQIPAFVFNQLQQNVLLDEQARKMKISLSKDTIAH 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I    +F   +  F+ D+F + L    I E  ++++YTK   R  ++   +  M+  NL
Sbjct: 119 TIGSDKMFQ-INGTFNKDLFYNYLQHLRIGESAFLNYYTKQEKRNQLIAALLSDMKAPNL 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                  +  E RS DY++++ +    IADP +  L +WFE ++  +RAPEY+ +S +  
Sbjct: 178 FYKALALYQEEKRSADYLIIDLKE-QTIADPDHETLQKWFETHQSEFRAPEYRTVSLLSM 236

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           ++++  K  +IS DE +A Y +N   + +PE RT E+L FP ++EAD A + +  G  F 
Sbjct: 237 ELNDFVKPKDISTDEAKAYYTQNTSHFVTPEKRTFEELRFPTREEADNAAKKIADGLSFD 296

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +L + + K+L+DI  G  ++  +P+  LA  IF L ++G  +PVI+   G V+  V++I+
Sbjct: 297 ELVKAEKKTLNDIKKGPLAENELPN-HLASEIFEL-QQGQVSPVINDLQGPVLIRVTHIE 354

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           PS ++ F+ V++ I   +   +A++ ++ +Y  +E     G S+ E++ + K+    +  
Sbjct: 355 PSSSLPFESVEESIRQTLAKNRATDDIRNNYVAIENARFEGASLKELADQYKLSLRTI-T 413

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           +D  GK ++G+ +  +P K+ LL  ++  ++ +  D  ++  +G Y+W ++ + IPARD+
Sbjct: 414 LDKTGKTLEGETLTDLPQKDALLDAIYQSNEGVDLD-PLSFQNGGYLWYKVDKIIPARDK 472

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
            LEE   DV   WK+ +T   +  KA    L+   EGK+  D+ + LG +  TT  + R 
Sbjct: 473 TLEEAELDVLSQWKSEETQRLLDEKAQN-ALKQFMEGKSLVDLARTLGVTKQTTPPLRRQ 531

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISY 593
           D   +  G +G+  +FSGP             + +++++ +  +     P     +  + 
Sbjct: 532 D-PFEILGVEGVKALFSGPKGHYGIIKGPVATNRIIYQINSVTMPKDITPHTLSPEVRTN 590

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
           +  M+ +DL   ++     ++ + ++     +  + 
Sbjct: 591 IDMMIREDLKLEMLQIANKEHPLEINSKNYNQIFNA 626


>gi|117618139|ref|YP_856546.1| peptidylprolyl cis-trans isomerase D [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559546|gb|ABK36494.1| peptidylprolyl cis-trans isomerase D [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 636

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 124/640 (19%), Positives = 259/640 (40%), Gaps = 37/640 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ ++  VAK+ L ++ + F + G+   L   + ++   +V    +  ++  N++
Sbjct: 1   MLDKLREGAQGKVAKVILGLIILSFALAGVGSYLNGPARTAP-ATVNGNDISSAALENAY 59

Query: 61  KQELGMISQKIGFVVNSERA---RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   A         + +LD L+  A  D    ++GL     ++  
Sbjct: 60  RNERARMESQMGESFSQLAANPDYMKQFRRGVLDRLIDQALFDSKARELGLRVSDEQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +D KF++D ++  + R G+  + + D   + + R  ++G  +G       
Sbjct: 120 AIVAMPEF-AEDGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMGALLGTEFALKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +Q  + Y + R +  + L           S+  + Q+++    ++   E  ++ Y+L 
Sbjct: 179 EAEQLDKLYNQTRDLRLVRLAASAYLGDVKVSDEEVEQYYKANSSHFMNDEQVKVDYLLL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290
           D     K +++S  + Q  Y+++++ +   E R V  ++ P        +++A+      
Sbjct: 239 DAATLGKDVKVSEQDAQDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEQKAEAVLTKA 298

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           K G  F  LA+              L  F K  + D +   + F+LAK GD + V+   F
Sbjct: 299 KAGDDFAALAKADSSDTFSAKKGGELDWFEKG-VMDPAFEKAAFALAKAGDLSTVVKSPF 357

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ +  +  ++P+ T  F +VK +  ++++  KA E    + +++ +  +   + D +  
Sbjct: 358 GFHVIKLLGVEPAQTKPFADVKAETISRLQADKAKELFFAEQQKMAD--SSFENPDSLDL 415

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYM 464
               + + +    +  +      +       ++L   F +   D  +    + L DG  +
Sbjct: 416 TADTMGLKVQSTGYFSQADAPAPLND----PKVLSAAFSEQLRDDNTNSDVIELADGKAL 471

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            + I    P   + L EV   V    K  K +E    KA  L L+  K G+N +     L
Sbjct: 472 VMHITGHQPKAAKPLAEVKEQVIAAIKHDKASEVARGKAQGL-LDKLKAGENIQAELTAL 530

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGP-----VEMVKCFPIENGLSYVVF--KVT 577
           G  +   + + R     +    + ++Q F  P        V+     NG   VV   KVT
Sbjct: 531 GLKVENHDGVARF---AQDLDQNLVAQAFRMPHPIDGKPSVELVTEANGDRVVVALDKVT 587

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +K  P          L Q   +    S+I  L+    + 
Sbjct: 588 VAK-EPSGMAKLLQGQLGQGKAQVSYKSLIDELRKSAKIE 626


>gi|319404079|emb|CBI77667.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella rochalimae
           ATCC BAA-1498]
          Length = 629

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 161/626 (25%), Positives = 305/626 (48%), Gaps = 16/626 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+ +R +  +WVAKIFL  L + F++ WG+       +  + +++ G+  +   ++  +
Sbjct: 1   MLKTMRNSVNSWVAKIFLSTLLLCFILLWGVPQ--LHTTNKNELLTSGKSTITVDTYHLA 58

Query: 60  WKQE--LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              +     ++  +  +   +  +   +   +L+ L      D+    + +      +  
Sbjct: 59  LADQSLRLALTSNLRRMFTPDEIQRYKIPFFVLNQLQQDVLFDEQARKMKINLSKDMIAR 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I    +F   +  F+ D+F++ L +   NE  ++ +YTK   R  ++   + GMR  ++
Sbjct: 119 IIGNDDIFQY-NRVFNRDLFLNYLQQLQTNENNFLKYYTKKEKRNQLISASLAGMRAPDI 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                  ++ E R  DY+V++ +    IADP+  +L +WF+ +K+ +RAPEY+ +S    
Sbjct: 178 FYKALATYHEEKRIADYLVIDLKKEKKIADPNPEILEKWFDTHKNKFRAPEYRTVSLFSI 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
              E  K   IS +E+Q  Y +N  ++ +PE R +E+L F  ++ AD A + + +G  F 
Sbjct: 238 TSEEFLKPQNISVNEIQTYYTQNTSRFITPEKRIIEELRFSTREAADNAAKKIAEGLSFD 297

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            L +E+ K+LSDI+ G  ++  +P+  LA  IF L KKG+ + VI+   G VI  V +I 
Sbjct: 298 ALVKEEKKNLSDITRGPLAENELPN-HLASEIFEL-KKGEISAVINDLQGPVIIRVVHIT 355

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           PS  +  Q+V+ DI   +    A   ++  Y  +E     G S+ E++++ K+    +  
Sbjct: 356 PSTQIPLQKVENDIRQTLAQNYAVTHLRNKYTEIENARFKGASLTELAKQYKLPHRKI-T 414

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           +D  GK  +G  +  +P KE LL  ++   + +  D  ++LP+G Y+W Q+   IPARDR
Sbjct: 415 IDKTGKTTEGIILTDLPQKEVLLNAIYQSHEGIDVD-PLSLPEGGYLWYQVDTIIPARDR 473

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
            L EV  +    WK  +    +  KA  ++ + +K GK+   +   LG    TT  + R 
Sbjct: 474 TLSEVKQNAIVQWKEEEIQRLLDEKAQDILKKLAK-GKSLDALATELGIIKQTTPALRRQ 532

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISY 593
           D  ++ FG +G+  +F G  +        N  + +V+K+T S V              + 
Sbjct: 533 D-PSQIFGVEGVKALFYGTKDHYGVVKGVNATNRIVYKITTSIVPEDITAHTLSSDIRTN 591

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVH 619
           +  M+ +DL   ++     +Y + ++
Sbjct: 592 IDTMIREDLKLEMLQAANKEYPIKIN 617


>gi|238795538|ref|ZP_04639053.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia mollaretii ATCC
           43969]
 gi|238720657|gb|EEQ12458.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia mollaretii ATCC
           43969]
          Length = 628

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 127/637 (19%), Positives = 272/637 (42%), Gaps = 23/637 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+   L   S       V  Q++  +    + 
Sbjct: 1   MMDNLRAAANNVVLKILLALIMLSFILTGVGSYLIGGSN-DYAAKVNGQEISRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E G + Q++G   ++        + L +++L  LV+   LDQ+ + +GL A   +V  
Sbjct: 60  QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   DNKF ++ ++  + R G    ++     + L    ++  F        +
Sbjct: 120 AIRQAPYFQ-TDNKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPI 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R V    ++ + + A    ++  L  ++++ K+++ APE  ++S+I  
Sbjct: 179 EAQAMSELILQQREVRLATVDLKALQAQQKVTDEELKAYYDQNKNSFIAPEQMKVSFIAM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + KI ++ +++ A Y++++  Y  PE R    + F  + EA  A   LKKG  F 
Sbjct: 239 DAAAMQDKITVTEEDIAAYYDQHRSSYTQPERRNYSVIQFKTEAEAKVALDELKKGADFA 298

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +A+E+   +     G       P+ +  +    +L++KG  + V+  S GY+I  +++I
Sbjct: 299 AMAKEKSTDIISRKNGGELGWLEPETTADELKQANLSEKGQLSDVVKSSVGYLIVRLNDI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           KP       EV   +A Q++  KA +      +++ E  A  +  + ++  E+       
Sbjct: 359 KPEQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGTKAK 416

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
             D+  +D    EV   P  + +    + G++     +  V   DG     ++I    P 
Sbjct: 417 QTDWFTRDSIPTEVNFKPVAQAIFDGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
                ++V   V +  K  K  +       +++    K+GK   +  K  G S      +
Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKILTAL-KQGKG-EEAMKAAGISFGEKKTL 534

Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
           +R  ++++      +  +F+ P       V     +   + V+ ++ +   G  P  E  
Sbjct: 535 SRAPDDDQL-----VQTIFTLPHPQKDQPVYGLSQDREDNIVLIELLSVTPGKLPEGEMK 589

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            FI+ + +  +    D+++A L+ Q ++ +     Q+
Sbjct: 590 TFIAKMQEGSSGVTFDALMANLRKQATIKMGPAEQQQ 626


>gi|311280662|ref|YP_003942893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae
           SCF1]
 gi|308749857|gb|ADO49609.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae
           SCF1]
          Length = 624

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 128/640 (20%), Positives = 271/640 (42%), Gaps = 32/640 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L     ++    V  Q++  S F N+ 
Sbjct: 1   MMDSLRTAANSVVLKIIFGIIIVSFILTGVSSYLIG-GNNTYAAKVNSQEIGRSQFENAV 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+ + +GL     +V  
Sbjct: 60  ASERNRMQQQLGDRFSELAANENYMKTLRQQVLNRLIDEALLDQYAKHLGLAISDQQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++  F   + KF +D F   +++ G+   +Y       L    ++   VG       
Sbjct: 120 AIFQTQAFQS-NGKFDNDRFNGIVSQMGMTADQYAQALRNQLETQQLINAIVGTDFMLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +Q      + R V    +N   + A    S+  ++ ++E++K+ + +PE  R+SYI  
Sbjct: 179 ETEQLATLVSQQRIVREATINVDALAAKQQVSDQEISSYYEQHKNEFVSPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++    S+ ++Q+ Y++++E++  PE      +    + +A     +L KG  F 
Sbjct: 239 DAAAMQE--TASDSDIQSYYDQHQEQFTQPERVRYSVIQTKTEADAKAVLDALSKGADFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G       PD         L +KG  + VI  S G+++A +
Sbjct: 297 ALAKEKSADIISAKNGGDMGWLEASTTPD---ELKNAGLKEKGQLSGVITSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P+      EV+ DIA +++  KA +      +++ +  A     + ++  E++  +
Sbjct: 354 DDVQPAKEKPLAEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGM 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 + G+D    E+   P  + +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KAVETGWFGRDSLPSELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                + L +V   V    K  K  ++    A++L+ E    GK   +  K  G S    
Sbjct: 472 KAEAVKPLADVKAQVTDIVKHTKAEQQAKLDADKLLAEL-NAGKG-DEAMKAAGLSFGPA 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL----SYVVFKVTNSKVG--PVQ 585
             ++R   +            FS P+          G     + V+  +   K G  P  
Sbjct: 530 TTLSRTGQD------PLSQTAFSLPLPQKDKPVYGVGSDMQGNVVLVSLDGVKDGTMPEA 583

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +K   ++ +TQ   +   +++++ L+    + + D + Q+
Sbjct: 584 QKKAMVAGITQNNAQIAFEAMMSNLRKDAKIKLGDIVTQQ 623


>gi|213622668|ref|ZP_03375451.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 599

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 118/614 (19%), Positives = 261/614 (42%), Gaps = 28/614 (4%)

Query: 25  FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN---SERAR 81
           F++ G+S  L   S  +    V  Q++  + F N++  E   + Q++G   +   +    
Sbjct: 1   FILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAFNNERNRMQQQLGDRYSELAANEGY 59

Query: 82  SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
              L +++L+ L+  A LDQ+  ++ L     +V   I  +P F   D KF ++ + + +
Sbjct: 60  MKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQAIFATPAFQ-VDGKFDNNRYNAIV 118

Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
            + G+   +Y       L+   ++    G         D+      + R V   V++   
Sbjct: 119 NQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNA 178

Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
           + A    ++  ++ ++++ K  +  PE  R+SYI  D      +  +S+ ++QA Y+++ 
Sbjct: 179 LAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLDAATM--QAPVSDADIQAYYDQHV 236

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSK 317
           +++  PE      +    + +A     +L KG+ F  LA+E+   +    +   +G   +
Sbjct: 237 DQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEE 296

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
                  L ++   L +KG  + VI  S G+++A + +I+P+      EV+ DIA +++ 
Sbjct: 297 SATV-PELKNA--GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQ 353

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
            KA +      +++ +  A     + ++  E++  +      +  +D   +E+   P  +
Sbjct: 354 EKALDAYYALQQKVSD--AASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVAD 411

Query: 438 QLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
            +    + G++     +  +   DG     V++ E  P   + L EV   V    K  K 
Sbjct: 412 AIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKA 471

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
            ++    A +L++E  K GK    + K  G S      ++R   +         +   S 
Sbjct: 472 EQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQD----PVSQAAFALSL 525

Query: 556 PVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
           P +    + + N +  + V+      K G  P  +K   +  +TQ   + + +++++ L+
Sbjct: 526 PTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLR 585

Query: 612 SQYSVTVHDNLIQR 625
            +  + + D L Q+
Sbjct: 586 KEAKIKIGDALEQQ 599


>gi|240850253|ref|YP_002971646.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
 gi|240267376|gb|ACS50964.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
          Length = 629

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 151/636 (23%), Positives = 316/636 (49%), Gaps = 16/636 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+IIR A+ +W+ +IFL +L + F++ WG+            +++ G+  V    +  +
Sbjct: 1   MLDIIRNATNSWIFRIFLAILLLCFILLWGVPQ--LHKKSERDLITSGKSTVTVDDYRLA 58

Query: 60  WKQELGMIS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              +   ++    +G +  +   +   +   + + L     LD+ +  + +      +  
Sbjct: 59  LADQSARLAYAAHLGRMFTANEMQQYQIPAFVFNQLQQNLLLDEQVRKMKISLSKDTIAH 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I    +F   +  F  ++F + L    I+E  ++++YTK   R  ++   +  M+  NL
Sbjct: 119 TIGSDKMFQ-VNGTFDKNLFYNYLQHLRISESAFLNYYTKQEKRNQLIAALLSDMKAPNL 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                  +  E R  DY+V++ +    IADP +  L +WF+ ++  +RAPEY+ +S +  
Sbjct: 178 FYKALALYQGEMRIADYLVIDLKEKETIADPDDEKLQKWFKTHQSQFRAPEYRTVSLLSM 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           ++++  K  +IS DE +A Y +N  ++ +PE RT E+L FP+++EAD A + +  G  F 
Sbjct: 238 ELNDFVKPKDISTDEAKAYYTQNASRFVTPEKRTFEELQFPSREEADNAAKKIADGLSFD 297

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +L + + K+L+DI  G  ++  +P   LA  IF L ++G  + VI+   G +I  V++I+
Sbjct: 298 ELVKAENKTLNDIKKGPLAENELP-SHLASGIFEL-QQGQVSTVINDLQGPIIIRVTHIE 355

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           PS ++ F++V+++I   +   +A++ ++ +Y  +E     G S+ E++ + K+    +  
Sbjct: 356 PSSSLPFEKVEENIRQTLAKNRATDDIRNNYVAIENARFEGASLKELADQYKLSLRTI-T 414

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           +D  GK ++G  +  +P K+ LL  ++  ++ +  D  ++  +G Y+W ++ + IPARD+
Sbjct: 415 IDKTGKTLEGAILTDLPQKDILLNAIYQSNEGVDLD-PLSFQNGGYLWYKVDKIIPARDK 473

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
            LEE   DV   WK+ +    +  KA    L+   EGK+   + + LG +  TT  + R 
Sbjct: 474 TLEEAKLDVLSQWKSEEIQRLLDEKAQN-ALKQLTEGKSLVALARTLGVTKQTTPALRRQ 532

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISY 593
           D+ +   G +GI  +FS P             + +++++    +     P     +  + 
Sbjct: 533 DSSDP-LGVEGIKALFSAPKGHYGIIKGPVATNRIIYQIKTVTMPKDITPHTLSTEVRAN 591

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
           +  M+ +DL   ++     ++ + ++     +  + 
Sbjct: 592 IDMMIREDLKLEMLQIANKEHPLEINSTNYNQIFNA 627


>gi|300022969|ref|YP_003755580.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524790|gb|ADJ23259.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 628

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 294/632 (46%), Gaps = 12/632 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ ++T VAK+   +L V F IWG++D +F   G   V  VG  ++    F  S+
Sbjct: 1   MLDAMRRGAQTPVAKLLFGLLCVSFAIWGVAD-VFQGWGRGFVAKVGHTEISAEEFRRSY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + EL  IS++    +++E+  + GLD+++L  +++GA ++   + +GL      +   I 
Sbjct: 60  QNELDRISRQSNQRLSAEQGHAFGLDRQVLAQMIAGAAIEAHADQLGLAISDKTLAEGIQ 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   D KF+   F   L + G++E+ +++   K   R  +V   + G      LLD
Sbjct: 120 ADPNFQ-TDGKFNRQGFEGLLQQIGMSEQGFLNLRRKDELRGAIVSALIKGQTVPKPLLD 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +   +  E R ++++ ++   V  +A+P  A L + +E  K  Y  PEY+++  ++    
Sbjct: 179 EIHAYNQEKRVLEWVKIDPAAV-TVAEPDEATLKKRYEDDKAKYMTPEYRKVQVLMLTPD 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQL 299
           + +K I I++DE+   YE +K+ + +PE R V+Q+ F ++  A+ A ++L+ G K    +
Sbjct: 238 DLKKSITITDDEIAKAYEADKDSFNTPEQRRVQQIAFKDRATAETALKALRDGTKSLADV 297

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           A+E G   +D+ LG  +K+ + D  +AD  FSL K   ++ VI G F  V+  V+ I+P 
Sbjct: 298 AKETGAKDTDVDLGLITKKSLIDPKVADVAFSLEKD-KYSDVIDGRFATVVVRVTQIEPG 356

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            T +  +VK+ + +++   K    ++     +E+    G ++ E++ + ++   ++P  D
Sbjct: 357 TTKTLADVKEQVRDKLANDKVHGNLQSKRDDVEDARLAGKTLKEVADQLQLTYKEIPATD 416

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
             G    GK V       ++  R F  D     D  + L +  Y WV +  +   + +  
Sbjct: 417 VTGLGPDGKPVLETADIRKITARAFAPD--TGDDSAIDLTNDGYAWVNVLSTDAPKQKAY 474

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           +EV   VK+D+ + +    +   A +L  +    G+    I       +  T  I R   
Sbjct: 475 DEVKDAVKQDYMSSEHHRLLDELAKKL-TDKVNAGEPIASIEAEAKGKVEKTEPITR-KT 532

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV---QEKDKFISYLTQ 596
                    ++Q F+         P  +  + +VF+V            E D+    L  
Sbjct: 533 IPPSISQSMVAQAFALAKGKAGHGPSSDNTTEIVFRVAEVTPAAALTLTETDELTRRLED 592

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
            +    L      LK ++  +V+   ++  + 
Sbjct: 593 ELANQSLTEYTEALKKRFGASVNQAELKSAVG 624


>gi|238788012|ref|ZP_04631808.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia frederiksenii ATCC
           33641]
 gi|238723960|gb|EEQ15604.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia frederiksenii ATCC
           33641]
          Length = 628

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 127/637 (19%), Positives = 268/637 (42%), Gaps = 23/637 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+   L   S       V  Q++  +    + 
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E G + Q++G   ++        + L +++L  LV+   LDQ+ + +GL A   +V  
Sbjct: 60  QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDDQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   D KF ++ ++  + R G    ++     + L    ++  F        +
Sbjct: 120 AIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R V    ++ + + A    ++  L  ++++ K+++ APE  +IS+I  
Sbjct: 179 EAQAMSALILQQRDVRLATIDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + KI ++ D++ A Y+++K  Y  PE R    + F  + EA  A   LKKG  F 
Sbjct: 239 DAAAMQDKITVTEDDIAAYYDQHKSSYGQPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +A+E+   +     G       P+ +  +    +L +KG  + V+  S GY+I  +++I
Sbjct: 299 AMAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           KP       EV   +A Q++  KA +      +++ E  A  +  + ++  E+       
Sbjct: 359 KPEQVKPLSEVHDALAKQVKQEKAVDAYYSLQQKVSE--AATSDNESLASAEEAAGTKAK 416

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
              +  +D    +V   P  + +    + G++     +  V   DG     ++I    P 
Sbjct: 417 QTGWFTRDAVPADVNFKPVIQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
                 +V   V +  K  K  +       +++    K+GK   +  K  G S      +
Sbjct: 477 GIEPFTQVRDQVAELVKRQKAEQVARVDGEKILTAL-KQGKG-DEAMKAAGISFGEKKTL 534

Query: 535 NRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
           +R  ++++      +  +F+ P      +V     +   + V+ ++ +   G  P  E  
Sbjct: 535 SRAPDDDQL-----VQTIFALPHPQKDQLVYGLSQDRQDNIVLIELLSVTPGKLPEGEMK 589

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            FI+ + +  +    D+++A L  Q ++ +     Q+
Sbjct: 590 TFIAKMQEGSSGVTFDALMANLHKQATIKMGPAEQQQ 626


>gi|319407091|emb|CBI80728.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella sp. 1-1C]
          Length = 629

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/635 (25%), Positives = 311/635 (48%), Gaps = 16/635 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+ +R +  +WVAKIFL  L + F++ WG+       +  + +++ G+  +   ++  +
Sbjct: 1   MLKTMRNSVNSWVAKIFLSTLLLCFILLWGVPQ--LHTTNKNELLTSGKSTITVDTYHLA 58

Query: 60  WKQE--LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              +     ++  +G +   +  +   +   +L+ L      D+    + +      +  
Sbjct: 59  LADQSLRLALTSHLGRMFTPDEIQKYKIPFFVLNQLQQDVLFDEQARKMKINLSKDMIAR 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I    +F   +  F+ D+F++ L +   NE  ++ +YTK   R  ++   + GMR  ++
Sbjct: 119 IIGNDDIFQH-NRVFNRDLFLNYLQQLQTNENNFLKYYTKKEKRNQLISASLAGMRAPDI 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                  ++ E R  DY+V++ +    IADP+  +L +WF+ +K+ +RAPEY+ +S    
Sbjct: 178 FYKALATYHEEKRIADYLVIDLKKEKKIADPNPEILEKWFDTHKNKFRAPEYRTVSLFSI 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
              E  K   IS +E+Q  Y +N  ++ +PE R +E+L F  ++ AD A + + +G  F 
Sbjct: 238 TSEEFLKPQNISVNEIQTYYTQNASRFITPEKRIIEELRFSTREAADNAAKKIAEGLNFD 297

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            L +E+ K+LSDI+ G   +  +P+  LA  IF L KKG+ + VI+   G VI  V++I 
Sbjct: 298 ALVKEEKKNLSDITRGPLEENELPN-HLASEIFEL-KKGEISAVINDLQGPVIIRVAHIT 355

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           PS  +  Q+V+ DI   +    A   ++  Y  +E     G S+ E++++ K+    +  
Sbjct: 356 PSTQIPLQKVENDIRQTLAKNYAVTHLRNKYTEIENARFEGASLKELAKQYKLPHRKI-T 414

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           +D  GK  +G  +  +P KE LL  ++   + +  D  ++LP+G Y+W Q+   IPARDR
Sbjct: 415 IDKTGKTTEGITLTDLPEKEVLLNAIYQSREGIDMD-PLSLPEGGYLWYQVDTIIPARDR 473

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
            L EV  +    WK  +    +  KA  ++ + +K GK+   +   LG    TT  + R 
Sbjct: 474 TLSEVKQNAIFQWKEEEIQRLLDEKAQNILKQLAK-GKSLDALATELGIIKQTTPALQRQ 532

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISY 593
           +  ++ FG +G+  +F G  +        N  + +V+K+T S +              + 
Sbjct: 533 NR-SQIFGVEGVKALFYGTKDHYGVVKSVNAANRIVYKITASIIPKNITAHTLSPDIRTN 591

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
           + +M+ +DL   ++     +Y + ++++   R  +
Sbjct: 592 IDKMIREDLKLEMLQVANKEYPIEINNSNYTRIFN 626


>gi|330859944|emb|CBX70273.1| peptidyl-prolyl cis-trans isomerase D [Yersinia enterocolitica
           W22703]
          Length = 628

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 127/637 (19%), Positives = 268/637 (42%), Gaps = 23/637 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+   L   S       V  Q++  +    + 
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G   ++        + L +++L  LV+   LDQ+ + +GL A   +V  
Sbjct: 60  QSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   D KF ++ ++  + R G    ++     + L    ++  F        +
Sbjct: 120 AIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R V    L+ + + A    ++  L  ++++ K+++ APE  +IS+I  
Sbjct: 179 EAQAMSALILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + KI ++ +++ A Y+++K  Y  PE R    + F  + EA  A   LKKG  F 
Sbjct: 239 DAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +A+E+   +     G       P+ +  +    +L +KG  + V+  S GY+I  ++ I
Sbjct: 299 AIAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNGI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           KP+      EV   +A Q++  KA +      +++ E  A  +  + ++  E+       
Sbjct: 359 KPAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAK 416

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
              +  +D    E+   P  + +    + G++     +  V   DG     ++I    P 
Sbjct: 417 QTGWFTRDAVPAEINFKPVVQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
                ++V   V +  K  K  +       +L+    K+GK   +  K  G S      +
Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKLLTAL-KQGKG-EEAMKAAGISFGEKKTL 534

Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
           +R  ++++      +  +F+ P       V     +   + V+ ++ +   G  P  E  
Sbjct: 535 SRAPDDDQL-----VQTIFALPHPQKDQPVYGLSQDRQDNIVLIELLSVTPGKLPESEMK 589

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            FI+ + +  +    D+++A L+ Q ++ +     Q+
Sbjct: 590 NFIAKMEEGASGVTFDALMANLRKQATIKMGPAEQQQ 626


>gi|238919016|ref|YP_002932530.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella
           ictaluri 93-146]
 gi|238868584|gb|ACR68295.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 626

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/640 (18%), Positives = 250/640 (39%), Gaps = 29/640 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V K+ L ++ + F++ G+ + L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSG-DYAAKVDGQEIGRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G   +           L K++L  ++    LDQ+ + + L     +V  
Sbjct: 60  QNERSRLQQQLGDQFSVLAGNEGYMKELRKQVLSRMIDDVLLDQYAKKLNLAISDAQVKE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   DN F +  ++  +AR G++   Y     + L    ++  F         
Sbjct: 120 AIRAMPYFQS-DNHFDNAKYLDMVARLGLSPDTYAQLVRQQLVTQQLIQGFTATGFTLPA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++       + R V    ++   +  +   S+A L  ++++++ ++ APE  ++ YI  
Sbjct: 179 EVNALAALTMQQRQVSLATIDISKLMPLQQVSDAELQGYYQQHQSSFIAPETVKVRYIEM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      K+ +SN E+ A Y+++K  +  P       +    + EA      L  G  F 
Sbjct: 239 DAAAINDKMTVSNAEISAYYDQHKGSFTQPARSDYSVIQVKTEAEAKAIAGQLASGADFA 298

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   LG   +E  PD         L+ KGD +  I  S GY+I  +
Sbjct: 299 TLAKEKSTDIISRKNGGELGWLEQETTPD---EIRAAKLSHKGDVSAPIASSVGYLIVRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + I+P+      EV+ +IA++++  KA +      +++ +  A     D ++  E    +
Sbjct: 356 NGIQPAVVKPLSEVRAEIADKVKQQKALDAFYALQQKVSD--AATNDNDSLAGAEDAAGV 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  +D   + +   P  + +    +FG++     +  V   +G   +V ++ E 
Sbjct: 414 KATETGWFSRDSVPQVLDFKPITQAIFDGSLFGENGTPGSNSDVISVEGDRAFVLRVSEH 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   +  ++V   V +  K  K   +  S   +L+    + GK    + K  G      
Sbjct: 474 KPEAVKPFDQVRDQVTELLKRQKAIAQARSDGEKLLAAL-QAGKGEASL-KAAGLRFGAE 531

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQ 585
             + R   + +         VF+ P       V     +   +  + ++     G    +
Sbjct: 532 QTLTRASEDRQL-----TDTVFAMPHPQTDKPVYGISTDRHDNIALIRLNAVTAGHLSAE 586

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   F S +         D+++  L+    + +      +
Sbjct: 587 QMKAFASQMLTGETGITFDALMDNLRDNAKIKLGAAADVQ 626


>gi|318604634|emb|CBY26132.1| peptidyl-prolyl cis-trans isomerase ppiD [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 628

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 126/637 (19%), Positives = 267/637 (41%), Gaps = 23/637 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+   L   S       V  Q++  +    + 
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G   ++        + L +++L  LV+   LDQ+ + +GL A   +V  
Sbjct: 60  QSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   D KF ++ ++  + R G    ++     + L    ++  F        +
Sbjct: 120 AIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R V    L+ + + A    ++  L  ++++ K+++ APE  +IS+I  
Sbjct: 179 EAQAMSALILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + KI ++ +++ A Y+++K  Y  PE R    + F  + EA  A   LKKG  F 
Sbjct: 239 DAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +A+E+   +     G       P+ +  +    +L +KG  + V+  S GY+I  ++ I
Sbjct: 299 AIAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNGI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           KP+      EV   +A Q++  KA +      +++ E  A  +  + ++  E+       
Sbjct: 359 KPAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAK 416

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
              +  +D    E+   P  + +    + G++     +  V   DG     ++I    P 
Sbjct: 417 QTGWFTRDAVPAEINFKPVVQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
                ++V   V +  K  K  +       +L+    K+GK   +  K  G S      +
Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKLLTAL-KQGKG-EEAMKAAGISFGEKKTL 534

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFP----IENGLSYVVFKVTNSKVG--PVQEKD 588
           +R  ++++      +  +F+ P             +   + V+ ++ +   G  P  E  
Sbjct: 535 SRAPDDDQL-----VQTIFALPHPQKDQPAYGLSQDRQDNIVLIELLSVTPGKLPESEMK 589

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            FI+ + +  +    D+++A L+ Q ++ +     Q+
Sbjct: 590 SFIAKMEEGASGVTFDALMANLRKQATIKMGPAEQQQ 626


>gi|332160753|ref|YP_004297330.1| peptidyl-prolyl cis-trans isomerase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664983|gb|ADZ41627.1| peptidyl-prolyl cis-trans isomerase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 628

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 126/637 (19%), Positives = 267/637 (41%), Gaps = 23/637 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+   L   S       V  Q++  +    + 
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G   ++        + L +++L  LV+   LDQ+ + +GL A   +V  
Sbjct: 60  QSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   D KF ++ ++  + R G    ++     + L    ++  F        +
Sbjct: 120 AIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R V    L+ + + A    ++  L  ++++ K+++ APE  +IS+I  
Sbjct: 179 EAQAMSALILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + KI ++ +++ A Y+++K  Y  PE R    + F  + EA  A   LKKG  F 
Sbjct: 239 DAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +A+E+   +     G       P+ +  +    +L +KG  + V+  S GY+I  ++ I
Sbjct: 299 AIAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNGI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           KP+      EV   +A Q++  KA +      +++ E  A  +  + ++  E+       
Sbjct: 359 KPAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAK 416

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
              +  +D    E+   P  + +    + G++     +  V   DG     ++I    P 
Sbjct: 417 QTGWFTRDAVPAEINFKPVVQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
                ++V   V +  K  K  +       +L+    K+GK   +  K  G S      +
Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKLLTAL-KQGKG-EEAMKAAGISFGEKKTL 534

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFP----IENGLSYVVFKVTNSKVG--PVQEKD 588
           +R  ++++      +  +F+ P             +   + V+ ++ +   G  P  E  
Sbjct: 535 SRAPDDDQL-----VQTIFALPHPQKDQPAYGLSQDRQDNIVLIELLSVTPGKLPESEMK 589

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            FI+ + +  +    D+++A L+ Q ++ +     Q+
Sbjct: 590 NFIAKMEEGASGVTFDALMANLRKQATIKMGPAEQQQ 626


>gi|123443338|ref|YP_001007312.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090299|emb|CAL13165.1| peptidyl-prolyl cis-trans isomerase D [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 628

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 128/637 (20%), Positives = 270/637 (42%), Gaps = 23/637 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+   L   S       V  Q++  +    + 
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E G + Q++G   ++        + L +++L  LV+   LDQ+ + +GL A   +V  
Sbjct: 60  QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   D KF ++ ++  + R G    ++     + L    ++  F        +
Sbjct: 120 AIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R V    L+ + + A    ++  L  ++++ K+++ APE  +IS+I  
Sbjct: 179 EAQAMSELILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + KI ++ +++ A Y+++K  Y  PE R    + F  + EA  A   LKKG  F 
Sbjct: 239 DAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +A+E+   +     G       P+ +  +    +L +KG  + V+  S GY+I  +++I
Sbjct: 299 AIAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           KP+      EV   +A Q++  KA +      +++ E  A  +  + ++  E+       
Sbjct: 359 KPAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAK 416

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
              +  +D    EV   P  + +    + G++     +  V   DG     ++I    P 
Sbjct: 417 QTGWFTRDAVPAEVNFKPVVQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
                ++V   V +  K  K  +       +++    K+GK   +  K  G S      +
Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKILTAL-KQGKG-EEAMKAAGISFGEKKTL 534

Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
           +R  ++++      +  +F+ P       V     +   + V+ ++ +   G  P  E  
Sbjct: 535 SRAPDDDQL-----VQTIFALPHPQKDQPVYGLSQDRQDNIVLIELLSVTPGKLPEGEMK 589

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            FI+ + +  +    D+++A L+ Q ++ +     Q+
Sbjct: 590 NFIAKMEEGASGVTFDALMANLRKQATIKMGPAEQQQ 626


>gi|269138352|ref|YP_003295052.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella
           tarda EIB202]
 gi|267984012|gb|ACY83841.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella
           tarda EIB202]
 gi|304558384|gb|ADM41048.1| Peptidyl-prolyl cis-trans isomerase PpiD [Edwardsiella tarda
           FL6-60]
          Length = 626

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/640 (18%), Positives = 249/640 (38%), Gaps = 29/640 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V K+ L ++ + F++ G+ + L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSG-DYAAKVDGQEIGRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G   +           L K++L  ++    LDQ+ + + L     +V  
Sbjct: 60  QNERSRLQQQLGDQFSVLAGNEGYMKELRKQVLSRMIDDVLLDQYAQKLNLAISDAQVKE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   DN F +  ++  +AR G++   Y     + L    ++  F         
Sbjct: 120 AIRAMPYFQ-TDNHFDNAKYLDMVARLGLSPDAYAQLMRQQLVTQQLIQGFTATGFTLPA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D       + R V    ++   +      S+A L  ++++++ ++ APE  ++ YI  
Sbjct: 179 EVDALAALTMQQRQVSLATIDISKLMPQQQVSDAELQGYYQQHQSSFIAPEAVKVRYIEM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      K+ +S+ E+ A Y+++K  +  P       +    + EA      L  G  F 
Sbjct: 239 DAAAINDKMTVSDAEISAYYDQHKGSFTQPARSDYSVIQVKTEAEAKAIAAQLANGADFA 298

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   LG    E  PD         L+ KGD +  I  S GY+I  +
Sbjct: 299 TLAKEKSTDIISRKNGGELGWLEPETTPD---EIRAAKLSHKGDVSAPIASSVGYLIVRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           ++++P+      EV+ +IA++++  KA +      +++ +  A     D ++  E    +
Sbjct: 356 NDMQPAVVKPLSEVRAEIADKVKQQKALDAFYALQQKVSD--AATNDNDSLAGAEDAAGV 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  +D   + +   P  + +    +FG++     +  V   +G     +++ E 
Sbjct: 414 KATETGWFARDNVPQVLNFKPVVQAIFDGSLFGENGTPGSNSDVISVEGDRAFVLRVSEH 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   +   EV   V +  K  K   +  S+  +L+    + GK      K  G S    
Sbjct: 474 KPEAVKPFAEVRDQVTELLKRQKAIAQARSEGEKLLAAL-QAGKG-DAALKAAGLSFGAE 531

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQ 585
             + R   + +         VF+ P       V     +   +  + ++     G    +
Sbjct: 532 QTLTRASEDRQL-----TDTVFAMPHPQTDKPVYGLSADRHDNIELIRLNAVTAGHLSAE 586

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +   F S +         D+++  L++   + +      +
Sbjct: 587 QMKAFASQMLTGETGITFDALMDNLRANAKIKLGAAADVQ 626


>gi|261253455|ref|ZP_05946028.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio orientalis CIP
           102891]
 gi|260936846|gb|EEX92835.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio orientalis CIP
           102891]
          Length = 619

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 133/632 (21%), Positives = 258/632 (40%), Gaps = 34/632 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   +   S  +T   VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSN-NTAAKVGNVEIGRGEFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ +      K +LD +V+   L+Q  E +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDVLLEQHAESLGLRVSDTQVRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF  +++ + L R G N + + ++  + L R  ++    G       
Sbjct: 120 LILEMPQFQ-IDGKFDQEIYQTALRRAGFNAESFAEYLRRDLVRNQLLTAIQGSDFTLPS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R V  + L+     A A  S   +  ++++  + Y  PE  +++YI  
Sbjct: 179 EVEAQSKLLTQTREVKKVTLSLEDFAAKAQLSEDEINDYYKQNPERYTRPEQVKVAYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
              + +  I++S ++ +  Y+++ +KY S E R V  ++    +Q +A      L  G  
Sbjct: 239 SAQQLKDDIQVSEEQAKQYYQEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LAEE+           SLG   ++ + D +  D+ F+L K GD T ++   FGY I 
Sbjct: 299 FATLAEEKSDDFGSASEGGSLGWIERD-VMDPAFEDAAFALTKVGDTTGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K S    + EV  +I  +++  +A ++  E    LE+       S+D+ ++    
Sbjct: 358 KLDELKDSVAKPYAEVAAEIKQELKDQQAVDQYYELQSELEKVAFEYPDSLDDAAQAINA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                  +      V   E+   P   Q +     K+D L+    + +     + V++++
Sbjct: 418 KIHTTDFISQ----VDAPELLKTPAVLQAIVSPEVKEDGLN-SEVIEVAPEHVIVVRVED 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           +       L +V   V      VK  +     A++LV E  KEGK  + + K  G     
Sbjct: 473 ARDEMVLPLADVREQVTTTLAKVKGEQSAIELADKLVAEL-KEGK--QGLLKESGLVFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIE---NGLSYVVFKVTNSKVGPVQ 585
           T  ++R               VFS   P E    F      NG   VV     S +    
Sbjct: 530 TETVDR--------SSPLADVVFSMVKPEEGKVEFAQAKDLNGDIVVVELTDVSSMFNTM 581

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             ++    +TQ   +  L  +I+ L+    + 
Sbjct: 582 YNEQIAQQMTQANAQQDLSGLISILRKTIDIE 613


>gi|326622155|gb|EGE28500.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 611

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/612 (19%), Positives = 258/612 (42%), Gaps = 28/612 (4%)

Query: 27  IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN---SERARSV 83
           + G+S  L   S  +    V  Q +  + F N++  E   + Q++G   +   +      
Sbjct: 15  LTGVSGYLIGGSN-NYAAKVNGQGISRAQFENAFNNERNRMQQQLGDRYSELAANEGYMK 73

Query: 84  GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
            L +++L+ L+  A LDQ+  ++ L     +V   I  +P F   D KF ++ + + + +
Sbjct: 74  SLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQAIFATPAFQ-VDGKFDNNRYNAIVNQ 132

Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
            G+   +Y       L+   ++    G         D+      + R V   V++   + 
Sbjct: 133 MGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNALA 192

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
           A    ++  ++ ++++ K  +  PE  R+SYI  D      +  +S+ ++QA Y+++ ++
Sbjct: 193 AKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLDAATM--QAPVSDADIQAYYDQHVDQ 250

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEY 319
           +  PE      +    + +A     +L KG+ F  LA+E+   +    +   +G   +  
Sbjct: 251 FTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESA 310

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
                L ++   L +KG  + VI  S G+++A + +I+P+      EV+ DIA +++  K
Sbjct: 311 TV-PELKNA--GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEK 367

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           A +      +++ +  A     + ++  E++  +      +  +D   +E+   P  + +
Sbjct: 368 ALDAYYALQQKVSD--AASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAI 425

Query: 440 LF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
               + G++     +  +   DG     V++ E  P   + L EV   V    K  K  +
Sbjct: 426 FNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQ 485

Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
           +    A +L++E  K GK    + K  G S      ++R   +         +   S P 
Sbjct: 486 QAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQD----PVSQAAFALSLPT 539

Query: 558 EMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
           +    + + N +  + V+      K G  P  +K   +  +TQ   + + +++++ L+ +
Sbjct: 540 KDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKE 599

Query: 614 YSVTVHDNLIQR 625
             + + D L Q+
Sbjct: 600 AKIKIGDALEQQ 611


>gi|83310913|ref|YP_421177.1| parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
 gi|82945754|dbj|BAE50618.1| Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
          Length = 623

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 153/627 (24%), Positives = 283/627 (45%), Gaps = 8/627 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML++ R AS+TW+ ++   +L + F+ WG  D +    G S  + +GR  +  +  +  +
Sbjct: 1   MLDVFRTASKTWIVRLLFALLALSFVAWGAGDVVRGGVGRSPAIEIGRTSMSAAEVMGEF 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           K+E+  +    G  + +E AR +G+  + +D+L++   +D+    +GL A    +   +A
Sbjct: 61  KREVERLQPLFGGKLTAEDARKMGMLDRTIDSLIARTLIDEAARSLGLAATDETILRRVA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P F G   +F  D+F SRL+R G  E  ++      + R  +V     G+     L D
Sbjct: 121 SNPAFKGPTGQFDRDLFRSRLSRLGHTEDSFMKTERTNMVRNQMVETVAAGIGAPQALTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E R  +  ++ +   P  A P  AVL  +++     + APE++ ++ +L    
Sbjct: 181 PLLAWREERRVAETFLIKDESTPLPAAPDAAVLEAYYKDNVSRFMAPEFRALTVLLLRPS 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +    I+I  + ++  Y +  E++ +PE R V Q+VF     A +A   +  GK    +A
Sbjct: 241 DVAGGIDIDEEMVRDAYRQRIEEFSTPERRAVSQIVFDESSAAAKATDLVTGGKDLATIA 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +     +  I LG   K  +P+  LA+++F L+  G  +  +  + G+ +  VS I+P  
Sbjct: 301 KALNSEI--IDLGVIEKNDLPE-GLAEAVFKLSS-GATSQPVKTALGWHVVKVSQIQPGR 356

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T SF EVK  +   MR  KA++ + E   R+E+ L  G +++E ++R  + ++ +  VD 
Sbjct: 357 TRSFDEVKAQLEQDMRKEKATDGLSELANRVEDALGGGATLEEAAKRHNLKTVKIAAVDA 416

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G+   GK VA +P  +Q L   F  D       T  +P+  Y  + +        + L 
Sbjct: 417 QGRGADGKPVADLPKSDQFLDVAFHTDQNTESPLT-EVPNNGYFLLHVDGVTAPAPKPLA 475

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           E+ ++V   W+  +  E+   KA +L  +  K G+    +  + GA L T+    R   E
Sbjct: 476 EIRSEVVATWQAERRQEQARDKALKL-ADRIKVGEGIAQVALSAGAKLETSKPFVREPAE 534

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK--VTNSKVGPVQEKDKFISYLTQMM 598
                   I+++F      +   P++ G         VT                ++Q +
Sbjct: 535 GTALPATIIAELFKAQPGGIATAPVQGGTLVARLAKVVTFDTNANPALTQAARQRVSQAV 594

Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             D+ D  IA L +   V V    + R
Sbjct: 595 ATDIADQYIAALNASIGVKVDRPQLTR 621


>gi|238764856|ref|ZP_04625797.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia kristensenii ATCC
           33638]
 gi|238696963|gb|EEP89739.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia kristensenii ATCC
           33638]
          Length = 627

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 129/636 (20%), Positives = 266/636 (41%), Gaps = 23/636 (3%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++ +R A+   V KI L ++ + F++ G+   L   S       V  Q++       + +
Sbjct: 1   MDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRGQLEQAVQ 59

Query: 62  QELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            E G + Q++G   ++        + L +++L  LV+   LDQ+ + +GL A   +V   
Sbjct: 60  SERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKDA 119

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I ++P F   D KF +  ++  + R G    ++     + L    ++  F        + 
Sbjct: 120 IRQAPYFQ-TDGKFDNSKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPIE 178

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                    + R V    L+ + + A    ++  L  ++++ K+++ APE  +IS+I  D
Sbjct: 179 AQAMSELILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAMD 238

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
               + KI I+ +++ A YE++K  Y  PE R    + F  + EA  A   LKKG  F  
Sbjct: 239 AAAMQDKITITEEDIAAYYEQHKSTYTQPEQRNYSVIQFKTEAEAKTALDELKKGADFAA 298

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +A+E+   +     G       P+ +  +    +L +KG  + V+  S GY+I  +++IK
Sbjct: 299 MAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDIK 358

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           P+      EV   +A Q++  KA +      +++ E  A  +  + ++  E+        
Sbjct: 359 PAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAKQ 416

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPAR 475
             +  +D    EV   P  + +    + G++     +  V   DG     ++I    P  
Sbjct: 417 TGWFTRDTVPTEVNFKPVVQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPEG 476

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
               ++V   V +  K  K  +        ++    K+GK   +  K  G S      ++
Sbjct: 477 IEPFDQVRDQVAELVKRQKAEQLARIDGENILTAL-KQGKG-EEAMKAAGISFGEKKTLS 534

Query: 536 RMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKDK 589
           R  ++++      +  +FS P       V     +   + V+ ++ +   G  P  E   
Sbjct: 535 RAPDDDQL-----VQTIFSLPHPQKDQPVYGLSQDRQDNIVLIELLSVTPGKLPEGEMKT 589

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           F++ + +  +    D+++A L+ Q ++ +     Q+
Sbjct: 590 FVAKMEEGASGVTFDALMANLRKQATIKMGPAEQQQ 625


>gi|238759258|ref|ZP_04620425.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia aldovae ATCC 35236]
 gi|238702545|gb|EEP95095.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia aldovae ATCC 35236]
          Length = 628

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 126/636 (19%), Positives = 267/636 (41%), Gaps = 19/636 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+   L   S       V  Q +  +    + 
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DYAAKVNGQDISRAQLEQAM 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E G + Q++G   ++        + L +++L  LV+   LDQ+ + +GL A   +V  
Sbjct: 60  QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAQKLGLSASDAQVKE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   DNKF ++ ++  + R G   +++     + L    ++  F        +
Sbjct: 120 AIRQAPYFQ-TDNKFDNNKYLELVNRMGYTPEQFAQLQRQQLINQQLLQAFGDTGFVLPI 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R V    ++ + + A    ++  L  ++E+ K+++ APE  ++S+I  
Sbjct: 179 EAQAMSELILQQRDVRLATIDLKALQAQQKVTDEELKAYYEQNKNSFIAPEQMKVSFIAM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + KI ++ +++ A YE++K  Y  PE R    + F  + EA  A   LKKG  F 
Sbjct: 239 DAAAMQDKITVTEEDIAAYYEQHKSSYTQPERRNYSVIQFKTEAEAKAALDELKKGADFA 298

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +A+E+   +     G       P+ +  +    +L +KG  + V+  S GY+I  +++I
Sbjct: 299 AMAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           KP       EV + +A Q++  KA +      +++ E  A  +  + ++  E++      
Sbjct: 359 KPELVKPLSEVHEALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEVAGAKAQ 416

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
              +  +D    EV   P  + +    + G+      +  V   DG     ++I    P 
Sbjct: 417 QTGWFTRDAVPTEVNFKPVVQAIFDGGLVGESGAPGSNSDVITVDGDRAFVIRIVGHKPE 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
                ++V   V +  K  K  +E      +++    K+GK   +  K  G +      +
Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQEARLDGEKILTAL-KQGKG-EEAMKAAGLTFGEKKTL 534

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEKDKF 590
           +R  + ++           + P +    + +      + V+ ++ +   G  P  E   F
Sbjct: 535 SRAPDGDRLVQTIF---ALAHPQKDQPVYGLSQDRQDNIVLIELLSVTPGKLPEGEMKTF 591

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            + + +  +    D+++A L  Q ++ +     Q+ 
Sbjct: 592 TAKMAEGASNVTFDALMANLHKQATIKMGPAEQQQA 627


>gi|323498280|ref|ZP_08103282.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sinaloensis DSM
           21326]
 gi|323316708|gb|EGA69717.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sinaloensis DSM
           21326]
          Length = 619

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 131/632 (20%), Positives = 254/632 (40%), Gaps = 34/632 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   +   +G +T   VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGAG-NTAAKVGNVEIGRGEFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ +      K +LD +V+   ++Q  E +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLIEQHAETLGLRVSDAQVRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF  D++ + L R G   + + ++  + L R  ++            
Sbjct: 120 MIVEMPQFQ-ADGKFDQDIYQASLRRAGFTPESFAEYLRRDLVRNQLLTAIQASDFSLAA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R V+ + L      A    S   +  ++E+    Y  PE  +++YI  
Sbjct: 179 EVEAQAKLLTQTREVETLTLPLSDFAAKVKLSEEDIQAYYEQNPQRYTRPEQVKVAYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
              + +  I IS ++ +  Y+++ +KY S E R V  ++    +Q +A      L  G  
Sbjct: 239 AAQQLKDAITISEEQAKKYYDEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LAEE+           SLG   ++ + D +  ++ F L   G+ T ++   FGY I 
Sbjct: 299 FATLAEEKSDDFGSASEGGSLGWIERD-VMDPAFEEAAFGLNNVGEVTELVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K S    + EV  +I  +++  +A ++  E    LE+       S+D+ +     
Sbjct: 358 KLDELKASVAKPYTEVAAEIKQELKDQQAIDQFYELQSELEKVAFEFPDSLDDAANAVDA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                  +  A       E+   P   Q +     K+D L+    + +     + V++++
Sbjct: 418 KIETTDFISQA----DAPELLKTPAVLQAILSPEVKEDGLN-SEVIEVAPEHVIVVRVED 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           +       LEEV T V +    VK  +     A++LV E  KEGK  + + +    +  T
Sbjct: 473 ARDETVLPLEEVRTQVTETLAKVKGEQSAIELADKLVAEL-KEGK--QQLLEENDLAFGT 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE-----NGLSYVVFKVTNSKVGPVQ 585
           +  ++R               +FS P               NG   VV     S     Q
Sbjct: 530 SETVDR--------SSPLADVIFSMPKPAEGQVEYAQAKQINGDIAVVKLAKVSDQFDEQ 581

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
              +  S LTQM  +  L  +I+ L+    + 
Sbjct: 582 YNTQIGSQLTQMNAQQDLTGLISILRKTTDIE 613


>gi|328473322|gb|EGF44170.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           10329]
          Length = 619

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 115/630 (18%), Positives = 261/630 (41%), Gaps = 30/630 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   L + S  ++   VG  ++P   F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSN-NSAAKVGNTEIPRGEFEMAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   + +F  +++ + L R G +   + ++  + L R  ++            
Sbjct: 120 MILEMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLTALQSSEFTLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +    + + + R +  + ++        + ++  +  +++   DN+  PE  ++SY+  
Sbjct: 179 EVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                +K+I++++++++  Y+++ +KY S E R V  ++    ++ +A      L  G  
Sbjct: 239 SAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNSGAD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  +A+E+    G + +   LG   ++ + D +  ++ F+L   GD + ++   FGY I 
Sbjct: 299 FAAVAQEKSDDFGSAENGGDLGWIERD-VMDPAFEEAAFALKNPGDMSGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K +    F EV  +I  ++   KA ++  E    LE        S+D+ S   K 
Sbjct: 358 KLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELERVAFEYPDSLDDAS---KA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           ++ ++   DF  + V   EV       Q L     K+D L+    + +     + V++++
Sbjct: 415 INQEVKTTDFISQ-VDAPEVLRNQAVMQALLSPEVKEDGLN-SEAIEVAPEHIIVVRVED 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           S       L EV   V  +   VK  +       ++V   ++       +      +   
Sbjct: 473 SRDETVLPLAEVKDQVVAELSRVKGEQGALELGTKVVAALNEGNT---AVLAENNLTFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG-PVQEK 587
              ++R                 + PV+    +     L  + VV ++   K       +
Sbjct: 530 QETVDRRS------PLATTVFAMAKPVDGKPVYGQSKDLEGNIVVIELDAVKAELDSSLE 583

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           D+    + +  ++  L SV+A L++   + 
Sbjct: 584 DQVAMQMQRASSQQDLSSVLAVLRANTDIE 613


>gi|91228613|ref|ZP_01262531.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 12G01]
 gi|269965576|ref|ZP_06179690.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 40B]
 gi|91187845|gb|EAS74159.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 12G01]
 gi|269829801|gb|EEZ84036.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 40B]
          Length = 619

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 119/629 (18%), Positives = 262/629 (41%), Gaps = 28/629 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   +   S  ++   VG  ++P   F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSN-NSAAKVGNTEIPRGEFEMAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVRS 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   + +F  +++ + L R G +   + ++  + L R  ++            
Sbjct: 120 MILDMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQNSEFILPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +    + + + R +  I ++        + ++  + ++++   DN+  PE  ++SYI  
Sbjct: 179 EVQAEGKLFTQTRDIRTIQIDLAEFAKNIELTDEEIQEYYKANPDNFTRPEQVKVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                ++++ +S+ E++  Y+++  KY S E R V  ++    ++ +A      L  G  
Sbjct: 239 SAEALKEQVNVSDAEVKKYYDEHLNKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGAD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+    G + +   LG   ++ + D +  ++ F+L   GD + ++   FGY I 
Sbjct: 299 FATLAQEKSDDFGSAENGGDLGWIERD-VMDPAFEEAAFALKNPGDTSGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            +  +K S    F+EV  +I  +M   +A ++  E    LE         D +    + V
Sbjct: 358 KLEELKDSVAKPFEEVAAEIKQEMVDQQAIDQFYELQNELERVAFE--YPDSLYDASQAV 415

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
           + ++   DF  + V   EV   P   Q +     K+D L+    + +     + V+++++
Sbjct: 416 NQEVKTTDFISQ-VDAPEVLRSPAVMQAILSPEVKEDGLN-SEAIEVAPEHIIVVRVEDA 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                  LEEV   V  +   VK  +E      Q+V    KEGK   ++      +    
Sbjct: 474 RDETVLPLEEVKDQVVAELSRVKGEQEAMELGTQVVAAL-KEGKT--NVLAENNLAFGEQ 530

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVGPVQEKDK 589
             ++R                 + PV+    +     L  + ++ ++         E + 
Sbjct: 531 ETVDRRS------PLATTVFAMAKPVDGKPVYGQSKDLEGNIIIIELDAVNAELDSELED 584

Query: 590 FIS-YLTQMMNKDLLDSVIAYLKSQYSVT 617
            ++  + +  ++  L SV+A L++   + 
Sbjct: 585 QVAMQMQRASSQQDLSSVLAVLRANTDIE 613


>gi|28897695|ref|NP_797300.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260878350|ref|ZP_05890705.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           AN-5034]
 gi|260898294|ref|ZP_05906790.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           Peru-466]
 gi|260901515|ref|ZP_05909910.1| SurA N-terminal domain protein [Vibrio parahaemolyticus AQ4037]
 gi|28805908|dbj|BAC59184.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088424|gb|EFO38119.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           Peru-466]
 gi|308092760|gb|EFO42455.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           AN-5034]
 gi|308110873|gb|EFO48413.1| SurA N-terminal domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 619

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 115/630 (18%), Positives = 261/630 (41%), Gaps = 30/630 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   L + S  ++   VG  ++P   F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSN-NSAAKVGNTEIPRGEFEMAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   + +F  +++ + L R G +   + ++  + L R  ++            
Sbjct: 120 MILEMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLTALQSSEFTLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +    + + + R +  + ++        + ++  +  +++   DN+  PE  ++SY+  
Sbjct: 179 EVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                +K+I++++++++  Y+++ +KY S E R V  ++    ++ +A      L  G  
Sbjct: 239 SAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGAD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  +A+E+    G + +   LG   ++ + D +  ++ F+L   GD + ++   FGY I 
Sbjct: 299 FAAVAQEKSDDFGSAENGGDLGWIERD-VMDPAFEEAAFALKNPGDMSGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K +    F EV  +I  ++   KA ++  E    LE        S+D+ S   K 
Sbjct: 358 KLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELERVAFEYPDSLDDAS---KA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           ++ ++   DF  + V   EV       Q L     K+D L+    + +     + V++++
Sbjct: 415 INQEVKTTDFISQ-VDAPEVLRNQAVMQALLSPEVKEDGLN-SEAIEVAPEHIIVVRVED 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           S       L EV   V  +   VK  +       ++V   ++       +      +   
Sbjct: 473 SRDETVLPLAEVKDQVVAELSRVKGEQGALELGTKVVAALNEGNT---AVLAENNLTFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG-PVQEK 587
              ++R                 + PV+    +     L  + VV ++   K       +
Sbjct: 530 QETVDRRS------PLATTVFAMAKPVDGKPVYGQSKDLEGNIVVIELDAVKAELDSSLE 583

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           D+    + +  ++  L SV+A L++   + 
Sbjct: 584 DQVAMQMQRASSQQDLSSVLAVLRANTDIE 613


>gi|262394811|ref|YP_003286665.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. Ex25]
 gi|262338405|gb|ACY52200.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. Ex25]
          Length = 619

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 119/629 (18%), Positives = 264/629 (41%), Gaps = 28/629 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   + S   +++   VG  ++P   F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVS-GNNNSAAKVGNTEIPRGEFEMAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVRS 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   + +F  +++ + L R G +   + ++  + L R  ++            
Sbjct: 120 MILDMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQNSEFILPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +    + + + R +  I ++        + ++  + Q+++   DN+  PE  +++YI  
Sbjct: 179 EVQAEGKLFTQTRDIRTIKIDLAEFAKNIELTDEEIQQYYKANPDNFTRPEQVKVAYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                ++++ +S+ E++  Y+++  KY S E R V  ++    ++ +A      L  G  
Sbjct: 239 SAEALKEQVNVSDAEVKKYYDEHLNKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGAD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+    G + +   LG   ++ + D +  ++ F+L   GD + ++   FGY I 
Sbjct: 299 FATLAQEKSDDFGSAENGGDLGWIERD-VMDPAFEEAAFALKNPGDTSGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            +  +K S    F+EV  +I  +M   +A ++  E    LE         D +    + V
Sbjct: 358 KLEELKDSVAKPFEEVAAEIKQEMVDQQAVDQFYELQSELERVAFE--YPDSLYDASQAV 415

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
           + ++   DF  + V   EV   P   Q +     K+D L+    + +     + V+++++
Sbjct: 416 NQEVKTTDFISQ-VDAPEVLRNPAVMQAILSPEVKEDGLN-SEAIEVAPEHIIVVRVEDA 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                  LEEV   V  +   VK  ++      Q+V    KEGK   D+      +    
Sbjct: 474 RDETVLPLEEVKDQVIAELSRVKGEQDAMELGTQVVAAL-KEGKT--DVLTENNLAFGEQ 530

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVGPVQEKDK 589
             ++R                 + PV+    +     L  + V+ ++         + ++
Sbjct: 531 ETVDRRS------PLATTVFAMAKPVDGKPVYGQSKDLEGNIVIIELDAVNAELDSDLEE 584

Query: 590 FIS-YLTQMMNKDLLDSVIAYLKSQYSVT 617
            ++  + +  ++  L SV+A L++   + 
Sbjct: 585 QVAMQMQRASSQQDLSSVLAVLRANTDIE 613


>gi|227113469|ref|ZP_03827125.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 626

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 129/640 (20%), Positives = 265/640 (41%), Gaps = 30/640 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++   F++ G+ D L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSG-DYAAKVNGQEITRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G   +   S       L ++ L  L+    LDQ+   +GL     ++  
Sbjct: 60  QNERSRQQETLGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDEQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   DN+F ++ ++ ++ R G+    Y     K L+   ++  F         
Sbjct: 120 AIFDVPAFQ-TDNRFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNTAFLLPQ 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   +   ++R V    ++          ++  +  ++++ K N+ APE  ++SYI  
Sbjct: 179 EIDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEIQSYYDQNKGNFIAPEEFKVSYITL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D       +++ +  +   YE+NK  Y  PE +    +   N+ +A     +LK+G  F 
Sbjct: 239 DAASIMDGVKVDDAAINDFYEQNKSGYSQPERKKFSVIQVKNEADAASVLDALKQGGDFA 298

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   LG   +  + D         L +KG  +  I  S GY+I  +
Sbjct: 299 TLAKEKSTDVISRRNGGDLGWMDENSMID---ELKQAKLTEKGQVSEAIKSSVGYLIVRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P       EV+ +IA +++  KA +      +++ E  A     + ++  E+   +
Sbjct: 356 DDVQPQQVKPLSEVRAEIAEKVKHEKAQDGYYALQQKVSE--AASNDNESLASAEEAAGV 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                D+  ++     +   P  + +    + G++     +  V   DG   +V +I E 
Sbjct: 414 KATQTDWFTREKVPAALNFQPVTQAIFSGALLGENGTAGNNSDVINVDGDRAFVLRITEH 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   R L++V T++ +  K  K  ++    A +++ E  K+GK+  +  K  G S    
Sbjct: 474 KPESTRPLDQVRTEIVETLKRQKAEQQTRVDAEKILAEL-KQGKD--EALKAAGLSFGEA 530

Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGLSYVVFKVTNSKVGPVQ---- 585
             ++ +       G      +F+   P +    + I    +  V  V    V P Q    
Sbjct: 531 KTMSSISQ-----GDATAEAIFAMPHPEKDKPSYAITQDQAGNVVLVALDSVTPHQLNDE 585

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +K +F S + Q     L DS+++ L+S+  + + +   ++
Sbjct: 586 QKTQFASQVQQGSLGALFDSLLSSLRSEAKIKMGNAAQEQ 625


>gi|296446388|ref|ZP_06888333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
 gi|296256161|gb|EFH03243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
          Length = 635

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/641 (26%), Positives = 305/641 (47%), Gaps = 18/641 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           MLE +R AS+  + ++ L +    + + F +WG+ D     S    +  VG  ++   ++
Sbjct: 1   MLEGLRIASQHRIGRVILGIVMGFIALSFAVWGIGDVFRGFSTKR-LAKVGSGEITVEAY 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ EL  + Q+    + +E AR  GLD+++L  +++  TLDQ    +GL      V 
Sbjct: 60  RGAYQNELRRLQQRARRAITNEEARRYGLDEQVLQRMITELTLDQKARALGLAIGDPDVL 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             +    +F G   KF  D F   L   G  E+ ++        R ++    VG M P  
Sbjct: 120 KLVRDENVFKGPTGKFDSDRFKQILRDAGYTERSFLAEQKSGYVRKELTDSVVGAMEPPQ 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
           L+L+   RF  E R VDY  L       IA PS   L ++FE  + ++RA EY+R+  + 
Sbjct: 180 LVLEALHRFRNEARDVDYFELPAAAAGEIAAPSEEELKKYFEDREQSFRAKEYRRLVILA 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                  K  E+S +E +  Y++ K ++Y + E R + QL+F  + EAD A + L+ G  
Sbjct: 240 ATPASLAKPQEVSEEEARKLYDEVKTKRYGTAEKRHLRQLLFAAKDEADAALKRLEGGLS 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  LA E+  +  DI LG    + + ++ L+D +F+  K G F   +  +FGY I  +  
Sbjct: 300 FEALATERKLATKDIDLGLLEAKDLGEIKLSDKVFAPEKPG-FVGPVQTAFGYAILEIEK 358

Query: 356 IKPSFT-VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           I PS    SF++ + ++  ++   +A+ +V++ +  +E+  A G ++ E ++   +  + 
Sbjct: 359 IVPSVVTRSFEQTRDELRGEIARERAAPQVQKVHDAIEDQRAGGKALAEAAKSLGLEVVA 418

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           +   D +G+D  G+E+ ++   E LL   F  D  +  D TVA  DG Y+W ++ +  PA
Sbjct: 419 VEATDASGRDKAGQEIPSVFGSEDLLKAAFASDVGVDND-TVATRDGGYLWFEVAKVEPA 477

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           R R  EE   +V+   +  +  + +++KA+ L  E  + GK   D+ K+ GA     N +
Sbjct: 478 RQRSFEEAKPNVEIAVREERLQKALAAKADALAAEL-RAGKTIADVAKSAGAESRRANDV 536

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKF 590
            R    N       I  VF  PV       ++ G   +VF+V N+   P      E    
Sbjct: 537 KR--APNPAIPNAAIIAVFDTPVHGAGSVAVDGG--RLVFRVENATTQPYDASSLEAKAA 592

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
              +      D+L+  +  L+  Y+V+++   ++    GE+
Sbjct: 593 AEQMKPAFTNDILEQYVGALEKIYNVSINQKALEAATGGEQ 633


>gi|46201422|ref|ZP_00055089.2| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 623

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 154/629 (24%), Positives = 287/629 (45%), Gaps = 12/629 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML++ R AS+TW+ ++   +L + F+ WG  D +    G S  + +G   +  +  +  +
Sbjct: 1   MLDVFRTASKTWIVRLLFALLALSFVAWGAGDVVRGGVGRSPAIEIGHTSMSATEVMGEF 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           K+E+  +    G  +  E AR +G+  + +D+L++   +D+    +GL A    +   +A
Sbjct: 61  KREVERLQPLFGGKLTPEDARKMGMLDRTIDSLIARTLIDEAARSLGLAATDETILRRVA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P F G   +F  D+F SRLAR G  E  ++      + R  +V     G+     L +
Sbjct: 121 SNPAFKGPTGQFERDIFRSRLARVGHTEDSFMKAERTNMVRNQMVETVAAGISAPQALTN 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E R  +  V+ +   P  A P  A L  +++     + APEY+ ++ +L    
Sbjct: 181 PLLAWREERRVAETFVIRDESTPLPAAPDAASLDAYYKDNLSRFMAPEYRALTVLLLRPA 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +    I+I  + ++  Y++  E++ +PE RTV Q+VF     A +A   +  GK    +A
Sbjct: 241 DVANAIDIDEEMVRETYQQRIEEFSTPERRTVSQIVFDESSAAAKATDMVTGGKDLAAVA 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +     +  I LG   K  +P+  LA+++F L + G     +  + G+ +  V+ ++P  
Sbjct: 301 KALNTDI--IELGIVEKNDLPE-GLAEAVFKL-RAGATGQPVKTALGWHVVKVTQVQPGR 356

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T SF EVK  +   MR  KA++ + E   R+E+ L  G +++E ++R  + ++ +  VD 
Sbjct: 357 TRSFDEVKVQLEQDMRKEKATDGLSELANRVEDALGGGATLEEAAKRHNLKTMKIAAVDA 416

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G+   GK VA +P  +Q L   F  D       T  +P+  Y  +++        R L 
Sbjct: 417 QGRGANGKPVADLPKSDQFLDVAFHTDQNTESPLT-EVPNNGYFLLRVDGVTAPAPRPLA 475

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           ++  DV   W+  +  E+   KA +L  +  K G++   + ++ GA L T+    R   E
Sbjct: 476 DIKADVVATWQAERRQEQARDKALKL-ADRIKAGESASQVAQSAGAKLETSKPFIREPGE 534

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY----LTQ 596
                   I+++F      V   P++ G   VV ++ +     +             ++Q
Sbjct: 535 GSSLPPTIIAELFKAQPGGVATAPVQGGT--VVARLNSVIAFDINANPALTQAARQRVSQ 592

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            +  D+ D  IA L +   V V    + R
Sbjct: 593 AVATDIADQYIAALNASIGVKVDRPQLTR 621


>gi|37679292|ref|NP_933901.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
 gi|37198035|dbj|BAC93872.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
          Length = 625

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 132/628 (21%), Positives = 256/628 (40%), Gaps = 26/628 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   L S S S++   VG  ++    F  ++
Sbjct: 7   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVSGS-SNSAAKVGNVEIGRGEFEMAY 65

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V  
Sbjct: 66  QNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVRS 125

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +D KF+ DV+ + L R G +   + ++  + L R+ ++            
Sbjct: 126 MILAMPEFQ-QDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRSQLLDALQTSEFTLPG 184

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   + + + R V  + LN R        +   + +++++ K  +  PE  ++SYI  
Sbjct: 185 EVDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKVSYIEL 244

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                +++I IS+DE++  Y+++ +KY S E R V  ++    +Q +A      L  G  
Sbjct: 245 AADSLKQQITISDDEVKQYYQEHLDKYSSEEKRRVAHILIEGDDQAKAQAILDELNAGAD 304

Query: 296 FIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+++            LG   +  + D +  ++ F+L   GD T ++   FGY I 
Sbjct: 305 FAALAQDKSDDFGSADNGGELGWIERG-VMDPAFEEAAFALKNVGDVTGLVKSDFGYHII 363

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K      F +V   I  +M   KA ++  E    LE+       S++E S   K 
Sbjct: 364 KLEELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELEKVAFEYPDSLEEAS---KA 420

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           V   +   DF  + V   E+   P   Q +     K D L+    + +     + V++ +
Sbjct: 421 VGQQVKHTDFISQ-VDAPEILRTPAVTQAITSPEVKLDGLN-SEAIEIAPEHIIVVRVDD 478

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           +       L EV   V  +   VK  ++      ++V    K G     I +  G S   
Sbjct: 479 ARDETVLPLTEVQDQVAAELSQVKGEQQALELGTEVVTAL-KAGNT--AILQEKGLSFGE 535

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
             +I+R     +           +      K        + VV  +   +        + 
Sbjct: 536 LEKIDRRSPLAQTVFAMAKPAAGNAVYGQSKDMEG----NVVVVALEKVEESLEPVLAQQ 591

Query: 591 IS-YLTQMMNKDLLDSVIAYLKSQYSVT 617
           IS  L ++  +  L S++A L++   + 
Sbjct: 592 ISVQLQRVSAQRDLSSIVAILRANTDIE 619


>gi|253687447|ref|YP_003016637.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251754025|gb|ACT12101.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 626

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 129/640 (20%), Positives = 265/640 (41%), Gaps = 30/640 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++   F++ G+ D L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSG-DYAAKVNGQEITRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G   +   S       L ++ L  L+    LDQ+   +GL     ++  
Sbjct: 60  QNERSRQQEALGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDEQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +N+F ++ ++ ++ R G+    Y     K L+   ++  F         
Sbjct: 120 AIFDVPAFQ-TNNRFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNSSFLLPQ 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   +   ++R V    ++          ++  +  ++++ K N+ APE  ++SYI  
Sbjct: 179 EIDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEVQSYYDQNKGNFIAPEEFKVSYITL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D       +++ +  +   YE+NK  Y  PE +    +   N+ +A     +LK+G  F 
Sbjct: 239 DAASIMDGVKVDDAAINDFYEQNKNDYSQPERKKFSVIQVKNEADATSVLDALKQGGDFA 298

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   LG   +  + D         L +KG  +  I  S GY+I  +
Sbjct: 299 TLAKEKSTDIISRRNGGDLGWMDENSMID---ELKQAKLTEKGQISAAIKSSVGYLIVRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P       EV+ +IA +++  KA +      +++ E  A     + ++  E+   +
Sbjct: 356 DDVQPQQIKPLSEVRAEIAEKVKHEKAQDGYYALQQKVSE--AASNDNESLASAEEAAGV 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                D+  ++     +   P  + +    + G++     +  V   DG   +V +I E 
Sbjct: 414 KATQTDWFTREKVPAALNFQPVTQAIFSGALLGENGTAGNNSDVINVDGDRAFVLRITEH 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   R L++V T++ +  K  K  ++    A +++ E  K+GK+  D  K  G S    
Sbjct: 474 KPESTRPLDQVRTEIVETLKRQKAEQQARLDAEKILAEL-KQGKD--DALKAAGLSFGEA 530

Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGLSYVVFKVTNSKVGPVQ---- 585
             ++ +       G      +F+   P +    + I    +  V  V    V P Q    
Sbjct: 531 KTMSSISQ-----GDATAEAIFAMPHPEKDKSSYAIAQDQAGNVVLVALDSVTPHQLNDE 585

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +K +F S + Q     L DS+++ L+S+  + + +   ++
Sbjct: 586 QKTQFASQVQQGSLGALFDSLLSSLRSEAKIKMGNAAQEQ 625


>gi|288958078|ref|YP_003448419.1| peptidyl-prolyl cis-trans isomerase D [Azospirillum sp. B510]
 gi|288910386|dbj|BAI71875.1| peptidyl-prolyl cis-trans isomerase D [Azospirillum sp. B510]
          Length = 626

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 152/634 (23%), Positives = 291/634 (45%), Gaps = 12/634 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  + +WV KI  V+L + F IWG+ D +F  S  +TV  VG+ ++   +    +
Sbjct: 1   MLQFIRNFAGSWVVKILFVLLILSFGIWGIGD-VFRSSTPTTVAEVGKVEIGQQALDQEF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +   +G  + +++A+  GL ++ L +L+     D    D+G+      V   IA
Sbjct: 60  RRQMERLRPMLGGNLTTDQAKRFGLLEQSLQSLIQRTLFDLAATDMGIAVGPEVVRLRIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  +  KF  ++F S L    + E  Y+    +  +R  V G    G+ P   L+ 
Sbjct: 120 DEPAFRNQQGKFDPNIFRSVLRNNQLTEDGYVAMIQRETARQLVAGAVSAGLAPPQPLVQ 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              RF  E R  + + L N  +  +  P +A + Q +E ++  + APEY+ ++       
Sbjct: 180 DLYRFRGEKRVAEVVTLPNASIGDVGAPDDAAIKQAYEDHQVRFTAPEYRALTVARLSPD 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
              K I+I + +L+  YE+   ++ +PE RTV+ +V  ++ +A    ++  K K   + A
Sbjct: 240 ALAKDIKIDDAQLRKAYEERANEFGAPEKRTVQMVVVDDEAKAKRIAEA-AKAKGLAEAA 298

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +E G  +  +SL +  K  +P+  + D+ F+L + G  +  I  + G+ +  V+ + P+ 
Sbjct: 299 KETG--VEPVSLDNIGKADLPE--IGDAAFAL-EPGKPSDAIKSALGWHVMAVTGVTPAS 353

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T SF++V+  +A +M+  +A + V     R+E+ LA G S++E+++ + +V   +  +D 
Sbjct: 354 TKSFEDVRDQLAAEMKKEQALDSVFSIANRVEDQLASGASLEEVAQAQGLVLTKVAAIDS 413

Query: 421 AGKDVKGKEVA-AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
            GK   GK+ A  +P  + LL   F      +  +      GS++ V++   IPA  R L
Sbjct: 414 TGKAPDGKDAAPDLPALKALLPNAFQL-KAGATSNLTEGEGGSFIAVRVDSVIPAAVRPL 472

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR-DIGKNLGASLLTTNQINRMD 538
            +V   V  DW+  +  +  + KA ++     +  +    D+    GAS   T    R  
Sbjct: 473 ADVRDQVIADWQQEQRNDRAAKKAEEIATRLKQGAEAAAQDVATQAGASFAMTAPFTRDA 532

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KFISYLTQ 596
              +    D ++++F+     V      +       K          + D     + + Q
Sbjct: 533 QTVQGLPGDMVAKLFTAKPNEVISGNSADAQVIARLKEIIPADPKAADADLAAVRASVEQ 592

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
            M  DL+      L+ +Y V +H   I ++    
Sbjct: 593 GMEGDLMAEFTNALRDKYPVRIHRQRIDQFFASN 626


>gi|319408341|emb|CBI81994.1| conserved exported hypothetical protein [Bartonella schoenbuchensis
           R1]
          Length = 628

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 156/635 (24%), Positives = 299/635 (47%), Gaps = 16/635 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+ +R A  +W A++F  +L + F+  WG+        G   +++ G+  +   ++  +
Sbjct: 1   MLDTLRSAKNSWFARLFFAILLLCFIFLWGIPQLY--TQGERDLLTSGKSTITVDTYRLA 58

Query: 60  WKQE--LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              +     ++  +G +   E  +   +   +L+ L      ++    + +      +  
Sbjct: 59  LADQSLRLALNSHLGRMFTPEEIQQYRISAFVLNQLQQDVLFNEQARKMKINLSKDMIAQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I+   +F  ++  FS D+F++ L +  +N+ ++ D+YT+   R  +    + GM+  +L
Sbjct: 119 AISADNIFQ-ENGAFSRDLFLNFLQQLRVNQNDFFDYYTQKEKRNQLTLALLSGMKVPDL 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                  +  E R  DY ++N +   + ADP    L +WF+ +K+ +RAPEY+ +S +  
Sbjct: 178 FYKAFAIYQEETRIADYFIVNLKEKESTADPDQKTLQKWFDTHKNAFRAPEYRTVSLLSI 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
              +  +  +IS DE +  Y +N  ++ +PE R +E+L FP +K ADEA + +  G  F 
Sbjct: 238 TPEKLVQLEDISKDEAKTYYTQNISRFTTPEKRIIEELRFPTRKAADEAAKKIADGLSFD 297

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            L + + K+L+DI  G   K   P+  L   IF L KKG  + VI    G VI  V +I 
Sbjct: 298 DLVKAEKKTLNDIKKGPLVKSERPNY-LESEIFEL-KKGQVSTVIDDLQGPVIIRVIDIT 355

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           PS  + F+ V+K+I   +   +A+  +   Y  +E     G S+ EI+ +  +    +  
Sbjct: 356 PSSPIPFETVEKNIRQTLAQNRAATDMHNKYTEIENARFEGASLKEIADQYNLPLRKV-T 414

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           +D  G  ++G  +  +P K+ LL  ++  +     D  ++L +G Y+W Q+   IP+RDR
Sbjct: 415 IDKKGITIEGITLTDLPEKDILLDAIYQANVETEPD-LLSLQEGGYLWYQVDTIIPSRDR 473

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
            LEEV  D    WK+ +    +  KA   + + +K GK+   +    G    TT  + R 
Sbjct: 474 ALEEVKQDAIAQWKSEEIQRLLDEKAENALKQLNK-GKSLDSLAAEFGVKKQTTQALRRQ 532

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ- 596
           D+ ++ FG++ I  +FS P             + +V+K+T S +          S +   
Sbjct: 533 DS-SEVFGFEDIKALFSKPKGHYGIAKGTLTTNRIVYKITASAIPDNITAQTISSDVRNN 591

Query: 597 ---MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
              M+ +DL   ++     ++ V ++++   R  +
Sbjct: 592 LDMMIREDLKLEILQVANKEHPVKINNSNYNRIFN 626


>gi|209963457|ref|YP_002296372.1| peptidyl-prolyl cis-trans isomerse, putative [Rhodospirillum
           centenum SW]
 gi|209956923|gb|ACI97559.1| peptidyl-prolyl cis-trans isomerse, putative [Rhodospirillum
           centenum SW]
          Length = 622

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 135/624 (21%), Positives = 253/624 (40%), Gaps = 8/624 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  + +W+AKI  ++L   F +WG+ D    +     V  VG  ++        +
Sbjct: 1   MLQAIRSTAGSWIAKILFILLIASFAVWGIGDFTRGLG--RHVAEVGDVQITPQELDQEF 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E+  + + +G  + +E+AR+ GL ++ L  +V    +    +D GL      V  EI 
Sbjct: 59  RDEVTRLRRVMGADLTAEQARAFGLLERTLQQMVQRTLVSLAGQDKGLMPSDAMVADEIR 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           R P+FH +  +F  D+  + L + G+ E+  ++     ++R  ++G    G      L +
Sbjct: 119 RVPVFHNQLGQFDPDLMRALLRQNGMTEQGLVEQVRADMARGQLLGSVSIGAILPTTLAE 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              RF  E R  D I +    +P  A P  +VL Q+ +     Y APEY+ ++       
Sbjct: 179 TLFRFRNEKRVADLITVPATAMPEPAAPDASVLAQYHQDRAVRYTAPEYRSLTVAKLTAE 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                I +S+ +++  Y     ++ +PE R V Q V P++  A     ++  G    Q  
Sbjct: 239 AIAGDITVSDADIEQAYSARASEFVAPERRAVVQAVLPDEAAAKSVADAVAGGASLEQ-- 296

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
             +  +   I LG  +++ +    L + +F L++ G  +  +  + G+ +  V  I P  
Sbjct: 297 AAKAAAAEAIDLGEVTRDQLL-PELVEPVFGLSQ-GAISAPVESTLGWHVLTVRGITPGH 354

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV+  +   +R  +A +++ E   ++++ LA G +++E ++R     + +  VD 
Sbjct: 355 ERPLAEVRDQVVADLRKERALDRLYEVANQMDDDLAGGATLEEAAQRAGAEIVRIEAVDS 414

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G    G  V  +P   Q+L   F         H        Y  V++    PA  + LE
Sbjct: 415 RGTTPAGTPVQDVPALPQVLETAFALPSG-ETGHMTETDAQGYFAVRVDGVQPAALKPLE 473

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
            +   V  DW   + A    +KA++L  +  +     R      GA+   +    R   E
Sbjct: 474 TIRERVLADWTAEQRAAAARTKADELAAKLREGADPARLAATVPGATHARSEPFTRRP-E 532

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
                   + ++F      V       G            V                +  
Sbjct: 533 AAALPASLVEELFGAQPGGVAVADGREGPVAARLVEIIPAVPDAAGVKVIRDTTEATLAD 592

Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQ 624
           DL+   +  L+ Q+ V+V+  LI 
Sbjct: 593 DLVTQYVGGLQRQFPVSVNRGLID 616


>gi|27363507|ref|NP_759035.1| peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus CMCP6]
 gi|27359623|gb|AAO08562.1| Peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus CMCP6]
          Length = 619

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 133/628 (21%), Positives = 257/628 (40%), Gaps = 26/628 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   L S S S++   VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVSGS-SNSAAKVGNVEIGRGEFEMAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V  
Sbjct: 60  QNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVRS 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +D KF+ DV+ + L R G +   + ++  + L R+ ++            
Sbjct: 120 MILAMPEFQ-QDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRSQLLDALQTSEFTLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   + + + R V  + LN R        +   + +++++ K  +  PE  ++SYI  
Sbjct: 179 EVDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                +++I IS+DE++  Y+++ +KY S E R V  ++    +Q +A      L  G  
Sbjct: 239 AADSLKQQITISDDEVKQYYQEHLDKYSSEEQRRVAHILIEGDDQAKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+            LG   ++ + D +  ++ F+L   GD T ++   FGY I 
Sbjct: 299 FATLAQEKSDDFGSADNGGELGWIERD-VMDPAFEEAAFALKNVGDVTGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K      F +V   I  +M   KA ++  E    LE+       S++E S   K 
Sbjct: 358 KLEELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELEKVAFEYPDSLEEAS---KA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           V   +   DF  + V   E+   P   Q +     K D L+    + +     + V++ +
Sbjct: 415 VGQQVKHTDFISQ-VDAPEILRTPAVTQAITSPEVKLDGLN-SEAIEIAPEHIIVVRVDD 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           +       L EV   V  +   VK  ++      ++V    K G     I +  G S   
Sbjct: 473 ARDETVLPLTEVQDQVAAELSQVKGEQQALELGTEVVTAL-KAGNT--AILQEKGLSFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
             +I+R     +           +      K        + VV  +   +        + 
Sbjct: 530 LEKIDRRSPLAQTVFAMAKPAAGNAVYGQSKDMEG----NVVVVALEKVEESLEPVLAQQ 585

Query: 591 IS-YLTQMMNKDLLDSVIAYLKSQYSVT 617
           IS  L ++  +  L S++A L++   + 
Sbjct: 586 ISVQLQRVSAQRDLSSIVAILRANTDIE 613


>gi|269961041|ref|ZP_06175410.1| peptidyl-prolyl cis-trans isomerse D [Vibrio harveyi 1DA3]
 gi|269834260|gb|EEZ88350.1| peptidyl-prolyl cis-trans isomerse D [Vibrio harveyi 1DA3]
          Length = 619

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 119/632 (18%), Positives = 262/632 (41%), Gaps = 34/632 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   +     +++   VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVG-GNNNSAAKVGNTEIARGEFEMAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   + +F  D++ + L R G +   + ++  + L R  ++            
Sbjct: 120 MILDMPQFQS-NGQFDQDIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQTSEFTLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +    + + + R V  I ++        D ++  +  +++   D +  PE  +++YI  
Sbjct: 179 EVQAEGKLFTQTRDVRTITIDLNEFAKKVDLTDEEIQDYYKANPDMFTRPEQVKVAYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
              E +K++++S+++++  Y+++ +KY + E R V  ++    ++ +A      L  G  
Sbjct: 239 SAEELKKQVQVSDEDVKKYYDEHLDKYSTEEQRRVAHILVEGDDEAKAQAILDELNAGAD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  +A+E+    G + +   LG   ++ + D +  ++ F+L   GD T ++   FGY I 
Sbjct: 299 FATVAKEKSDDFGSAENGGDLGWIERD-VMDPAFEEAAFALKNPGDMTGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K +    + EV  +I  +M   KA ++  E    LE+       S+D+ S   K 
Sbjct: 358 KLEELKGAVAKPYSEVAAEIKQEMIDQKAVDQFYELQNELEKVAFEFPDSLDDAS---KA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           V   +   DF  +     EV       Q +     K+D L+    + +     + V++++
Sbjct: 415 VGQKVKTTDFISQ-ADAPEVLKNQAVMQAILSPEVKEDGLN-SEAIEVAPEHIIVVRVED 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           +       L+EV   V  +   VK  +       ++V    +  K   DI      +   
Sbjct: 473 ARDETVLPLDEVKDQVVAELSRVKGEQGAIELGTKVVAALKEGNK---DILAENNLTFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGL--SYVVFKVTNSKVG-PVQ 585
              ++R             S VF+   PV+    +     L  + VV ++          
Sbjct: 530 QESVDRRS--------PLASTVFAMAKPVDGKPVYGQSKDLEGNIVVVELDAVHAELDSA 581

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +++  + + +  ++  L SVIA L++   + 
Sbjct: 582 LEEQVATQMQRASSQLDLSSVIAVLRANTDIE 613


>gi|238754239|ref|ZP_04615596.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia ruckeri ATCC 29473]
 gi|238707486|gb|EEP99846.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia ruckeri ATCC 29473]
          Length = 627

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 127/633 (20%), Positives = 263/633 (41%), Gaps = 23/633 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+   L   S       V  Q++  +    S 
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGGYLIGGSN-DYAAKVNGQEISRAQLEQSM 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G   +           L ++IL  L++   LDQ+ + +GL A   +V  
Sbjct: 60  QSERSRLQQQLGEQFSVLAGNEGYMQQLRQQILGQLINNMLLDQYAKQLGLSASDEQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I + P F   DNKF ++ ++  + R G    ++     + L    ++  F         
Sbjct: 120 SIRQLPYFQ-TDNKFDNNKYLELVNRMGYTPDQFAQIQRQQLINQQLLQAFSETGFALPA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R V    L+ + + A    ++  L  ++E+ ++++ APE  +IS+I  
Sbjct: 179 EAQAMSELILQQREVRLATLDLKALQAKQTVTDEELKAYYEQNRNSFIAPEEMKISFIEM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++KI ++ +++   YE+++  +  PE R    + F N+ +A  A   LK G  F 
Sbjct: 239 DAAAMQEKITVTEEDIATYYEQHRSSFTQPERRNYSVIQFKNEADAKTALAELKNGADFT 298

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            LA+E+   +     G       P+ +  +    +L +KG  + V+  S GY+I  +++I
Sbjct: 299 TLAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           KP       EV   +A +++  KA +      +++ E  A  +  + ++  E+       
Sbjct: 359 KPEQVKPLSEVHDALATKVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGSKAK 416

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
              +  +D    ++   P  + +    + G++     +  V   DG     ++I    P 
Sbjct: 417 QTAWFTRDAVPAQLNYKPVIQAIFEGALVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
             +  ++V   V +  K  K  ++      +++    K+GK   +  K  G S      I
Sbjct: 477 GVQPFDQVRDQVAELVKRQKAEQQARVDGEKILTAL-KQGKG-EEAMKAAGLSFGEKKMI 534

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVG--PVQEKD 588
            R   +++         VF+ P   V+        +   + V+ ++ +   G  P  E  
Sbjct: 535 ARAPGDDQL-----AQTVFALPHPQVEKPVYGLSQDRQDNIVLIELLSVTPGKLPEDEMP 589

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
            F + + + +N   LD++IA L  Q ++ +   
Sbjct: 590 NFTTKMAEGINGIALDALIANLHKQATIKMGSA 622


>gi|320156965|ref|YP_004189344.1| peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus
           MO6-24/O]
 gi|319932277|gb|ADV87141.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio vulnificus
           MO6-24/O]
          Length = 619

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 133/628 (21%), Positives = 257/628 (40%), Gaps = 26/628 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   L S S S++   VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVSGS-SNSAAKVGNVEIGRGEFEMAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V  
Sbjct: 60  QNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVRS 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +D KF+ DV+ + L R G +   + ++  + L R+ ++            
Sbjct: 120 MILAMPEFQ-QDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRSQLLDALQTSEFTLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   + + + R V  + LN R        +   + +++++ K  +  PE  ++SYI  
Sbjct: 179 EVDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                +++I IS+DE++  Y+++ +KY S E R V  ++    +Q +A      L  G  
Sbjct: 239 AADSLKQQITISDDEVKQYYQEHLDKYSSEEQRRVAHILIEGDDQAKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+            LG   ++ + D +  ++ F+L   GD T ++   FGY I 
Sbjct: 299 FAALAQEKSDDFGSADNGGELGWIERD-VMDPAFEEAAFALKNVGDVTGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K      F +V   I  +M   KA ++  E    LE+       S++E S   K 
Sbjct: 358 KLEELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELEKVAFEYPDSLEEAS---KA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           V   +   DF  + V   E+   P   Q +     K D L+    + +     + V++ +
Sbjct: 415 VGQQVKHTDFISQ-VDAPEILRTPAVTQAITSPEVKLDGLN-SEAIEIAPEHIIVVRVDD 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           +       L EV   V  +   VK  ++      ++V    K G     I +  G S   
Sbjct: 473 ARDETVLPLTEVQDQVAAELSQVKGEQQALELGTEVVTAL-KAGNT--AILQEKGLSFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
             +I+R     +           +      K        + VV  +   +        + 
Sbjct: 530 LEKIDRRSPLAQTVFAMAKPAAGNAVYGQSKDMEG----NVVVVALEKVEESLEPVLAQQ 585

Query: 591 IS-YLTQMMNKDLLDSVIAYLKSQYSVT 617
           IS  L ++  +  L S++A L++   + 
Sbjct: 586 ISVQLQRVSAQRDLSSIVAILRANTDIE 613


>gi|156973716|ref|YP_001444623.1| peptidyl-prolyl cis-trans isomerse [Vibrio harveyi ATCC BAA-1116]
 gi|156525310|gb|ABU70396.1| hypothetical protein VIBHAR_01421 [Vibrio harveyi ATCC BAA-1116]
          Length = 619

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 119/630 (18%), Positives = 257/630 (40%), Gaps = 30/630 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   +     ++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVG-GNNNAAAKVGNTEIARGEFEMAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   + KF  +++ + L R G +   + ++  + L R  ++            
Sbjct: 120 MILDMPQFQS-NGKFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQTSEFTLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +    + + + R V  I ++        D ++  +  +++   + +  PE  +++YI  
Sbjct: 179 EVQSEGKLFTQTRDVRTITIDLNEFAKKVDLTDEEIQDYYKANPEMFTRPEQVKVAYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
              E +K+I+IS+++++  Y+++ +KY + E R V  ++    ++ +A      L  G  
Sbjct: 239 SADELKKQIQISDEDVKKYYDEHLDKYSTEEQRRVAHILVEGDDEAKAQAILDELNGGAD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F +LAEE+    G + +   LG   ++ + D +  ++ F+L   GD T ++   FGY I 
Sbjct: 299 FAKLAEEKSNDFGSAENGGDLGWIERD-VMDPAFEEAAFALKNPGDITGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K +    F EV  +I  +M   KA ++  E    LE+       S+D+ S   K 
Sbjct: 358 KLEELKGAVAKPFSEVAAEIKQEMVDQKAVDQFYELQNELEKVAFEYPDSLDDAS---KA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           V   +   DF  + V   EV       Q +     K+D L+    + +     + V++++
Sbjct: 415 VGQKVKTTDFISQ-VDAPEVIKNQAVMQAILSPEVKEDGLN-SEAIEVAPEHIIVVRVED 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           +       L +V   V  +   VK  +       ++V       K   DI      +   
Sbjct: 473 ARDETVLPLADVKDQVVAELSRVKGEQGAIELGTKVVAALKDGNK---DILAENNLAFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVGPVQEKD 588
            + ++R                 + P      +     L  + VV ++           +
Sbjct: 530 QDSVDRRS------PLAATVFAMAKPEGDKPVYGQSKDLDGNVVVIELDAVHAELDSTLE 583

Query: 589 KFIS-YLTQMMNKDLLDSVIAYLKSQYSVT 617
           + ++  + +  ++  L SVIA L++   + 
Sbjct: 584 EQVAMQMQRASSQQDLTSVIAVLRANTDIE 613


>gi|238751010|ref|ZP_04612506.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia rohdei ATCC 43380]
 gi|238710700|gb|EEQ02922.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia rohdei ATCC 43380]
          Length = 628

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 125/637 (19%), Positives = 263/637 (41%), Gaps = 24/637 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+   L   S       V  Q++  +    + 
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G   ++          + +++L  LV+   LDQ+ + +GL A   +V  
Sbjct: 60  QSERSRMQQQLGEQFSALAANEGYMQQMRQQVLGQLVNNMLLDQYAKKLGLTASDAQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F  +  KF +  +++ + + G    ++     + L    ++  F         
Sbjct: 120 AIRQAPYFQTE-GKFDNSKYLALVNQMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R V    L+ + + A    ++  L  ++++ K+++ APE  +IS+I  
Sbjct: 179 EAQAMSELILQQRDVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + KI ++ +++ A Y+ +K  Y  PE R    + F  + +A  A   LKKG  F 
Sbjct: 239 DAAAMQDKITVTEEDITAYYDLHKSSYTQPEQRNYSVIQFKTEADAKAALDELKKGADFA 298

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +A+E+   +     G       PD +  +    +L+ KG  + V+  S GY+I  +++I
Sbjct: 299 TIAKEKSTDIISRKNGGELGWLEPDTTADELKQANLSDKGQLSDVVKSSVGYLIVRLNDI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           KP       EV   +A Q++  KA +      +++ E  A  +  + ++  E+       
Sbjct: 359 KPEQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAK 416

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
              +  +D    +V   P  + +    + G++     +  V   DG     ++I    P 
Sbjct: 417 QTGWFTRDAVPADVNFKPVIQAIFDGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
                ++V   V +  K  K  +       +++    K+GK   +  K  G S      +
Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKILTAL-KQGKG-EEAMKAAGISFGEKKTL 534

Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
           +R   + +      +  VF+ P       V     +   + V+ ++ +   G  P  E  
Sbjct: 535 SRAPGDEQL-----VQTVFALPHPQKDQPVYGLSQDRADNIVLIELLSVIPGKLPEGEMK 589

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            FI+ + +  +    D+++A L  Q ++ +   L Q+
Sbjct: 590 TFIAKMEEGASNVTFDALMANLHKQATIKMG-TLEQQ 625


>gi|262404271|ref|ZP_06080826.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC586]
 gi|262349303|gb|EEY98441.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC586]
          Length = 619

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 118/627 (18%), Positives = 257/627 (40%), Gaps = 24/627 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++  A         K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQSQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDQQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +  +F  +++ + L R G     + ++  K L R  ++    G       
Sbjct: 120 MILDMPQFQSQ-GQFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMSALQGSEFSLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLADFAKKVTLSDDDIQQYYKANTERFTRPEQMKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                +K+I I ++  Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADALKKQIMIDDEAAQEYYQEHLDKYSTAEQRKVSHILVEGSDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  +A+E+    G +    +LG   ++ + D +   + F+L + G  + ++   FGY I 
Sbjct: 299 FATVAKEKSQDVGSAQEGGALGWIERDTM-DPAFEAAAFALTENGQISGLVKSEFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410
            +  +K      + EV K +  ++   +A +        LE+       S+DE +   K 
Sbjct: 358 RLDEVKAPVVKPYTEVAKAVKQELVDQQALDAFYTKQSELEKLAFEHSDSLDEAA---KA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           +S  +   DF   + +  ++ A P   Q L     K+D L+    + +     + V+++E
Sbjct: 415 ISTQVEHTDFISAE-QAPDLLANPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRMEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           S P     L +V + V +    +K  ++     N++V    K G +  ++    G +   
Sbjct: 473 SRPETVLPLADVKSQVVEQLSRMKGEQQALELGNKIVAAL-KVGNS--NVLAENGVAFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
              I+R              Q         +    +  +  +      SKV P    ++ 
Sbjct: 530 VQMIDRSSPLANTVYSMVKPQ--DDAKGYAQAKDFDGNVVVIELNKVESKVTPA-YHEQI 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + L+++ ++  L  VI+ L+    + 
Sbjct: 587 ATQLSRIGSQQDLAGVISVLRQNTDIE 613


>gi|319405521|emb|CBI79140.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella sp. AR
           15-3]
          Length = 629

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 162/635 (25%), Positives = 312/635 (49%), Gaps = 16/635 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           MLE IR A  +WVAKIFL  L + F+  WG+      +     +++ G+  +   ++  +
Sbjct: 1   MLETIRNAVNSWVAKIFLTTLLLCFIFLWGVPQ--LHIMNEKELLTSGKSTITIDNYRLA 58

Query: 60  WKQELGMIS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              +   ++    +G +   +  +   +   +L+ L      D+    + +      +  
Sbjct: 59  LADQSLRLAITSHLGRMFTPDEIQRYKIPVFVLNQLQQDVLFDEQARKMKINLSKDMLAR 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I+   +F   +  F+ D+F++ L R   NE+ ++++YTK   R  ++   + GM+  N+
Sbjct: 119 IISNDNIFQR-NRAFNRDLFLNYLQRLHTNERNFLNYYTKKEKRKQLILASLSGMKAPNI 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                  ++ E R  DY+V++ +    +ADP+  +L +WF  +K  +RAPEY+ +S +  
Sbjct: 178 FYKALATYHEEKRIADYLVIDLKKEEKVADPNQEILEKWFNTHKKKFRAPEYRTVSLLSI 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
              E  K  ++S +E+Q  Y +N  ++  PE RT+E+L F  ++ AD A + + +G  F 
Sbjct: 238 TSEEFLKPQDVSVNEIQTYYTQNASRFIIPEKRTIEELRFSTREAADNAAKKIAEGLSFD 297

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            L +E+ K LSDI+ G  ++  +P+  LA  IF L KKG  + VI+   G VI  V++I 
Sbjct: 298 ALVKEEKKKLSDITKGPLAENELPN-HLASEIFEL-KKGQISAVINDLQGPVIIRVAHIT 355

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           PS  +  Q+V+K+I   +    A+  V+  Y  +E     G S+ E++++ K+    +  
Sbjct: 356 PSTQIPLQKVEKEIRQILAKNYATTHVRNKYTEIENARFEGASLAELAKQYKLPLRKI-T 414

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           +D  GK  +G  +  +P K+ LL  ++   + +  D  ++LP+G Y+W Q+   IPARDR
Sbjct: 415 IDKTGKTTEGISLTDLPQKDILLNAIYQSRENIDMD-PLSLPEGGYLWYQVDTIIPARDR 473

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
            L E   +V   W+  +    +  KA  ++ + +  GK+   +   LG    TT  + R 
Sbjct: 474 TLSEAKQNVIIQWREEEIQRLLDEKAQDILKQLAN-GKSLDALATELGIIKQTTPALRRQ 532

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISY 593
           D+ ++ FG +G+  +F  P +        N  + +++K+T S +              + 
Sbjct: 533 DS-SQIFGVEGVKALFYDPQDHYGVVKGVNAENRIIYKITTSIIPEDITAHTLLPDIRTN 591

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
           +  M+ +DL   ++     +Y + ++++   R  +
Sbjct: 592 IDMMIREDLKLEMLQVANKEYPIEINNSNYTRIFN 626


>gi|238791435|ref|ZP_04635073.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia intermedia ATCC
           29909]
 gi|238729051|gb|EEQ20567.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia intermedia ATCC
           29909]
          Length = 628

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 127/635 (20%), Positives = 268/635 (42%), Gaps = 19/635 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+   L   S       V  Q++  +    + 
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E G + Q++G   ++        + L +++L  LV+   LDQ+ + +GL A   +V  
Sbjct: 60  QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   DNKF ++ ++  + R G    ++     + L    ++  F        +
Sbjct: 120 AIRQAPYFQ-TDNKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R V    ++ + + A    ++  L  ++++ K+++ APE  ++S+I+ 
Sbjct: 179 EAQAMSELILQQREVRLATIDLKALQAQQKVTDEELKAYYDQNKNSFIAPEQMKVSFIVM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + KI ++ +++ A YE +K  Y  PE R    + F  + EA  A   LKKG  F 
Sbjct: 239 DAAAMQDKITLTEEDIAAYYELHKSSYTQPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +A+E+   +     G       PD +  +    +L +KG  + V+  S GY+I  +++I
Sbjct: 299 AMAKEKSTDIISRKNGGELGWLEPDTTADELKQANLNEKGQLSDVVKSSVGYLIVRLNDI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           KP+      EV   +A Q++  KA +      +++ E  A  +  + ++  E+       
Sbjct: 359 KPAQVKPLSEVHDALAKQVKQGKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAK 416

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
              +  +D    EV   P  + +    + G++     +  V   DG     ++I    P 
Sbjct: 417 QTGWFTRDAVPAEVNFKPVVQAIFDGGLVGENGAPGSNSDVITVDGDRAFVIRIDAHKPE 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
             +  ++V   V +  K  K  +       +L+    K+GK   D  K  G +      +
Sbjct: 477 GIQPFDQVRDQVAELVKRQKAEQLARVDGEKLLTAL-KQGKG-EDAMKAAGITFGEKKAV 534

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEKDKF 590
           +R  ++++           + P +    + +      + V+ ++ +   G  P  E   F
Sbjct: 535 SRAPDDDQLVQTIF---ALAHPQKEQPVYGLSQDRQDNIVLIELLSVTPGKLPEGEMKVF 591

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            + + +  +    D+++A L  Q ++ +     Q+
Sbjct: 592 TAKMLEGASGVTFDALMANLHKQATIKMGPAEQQQ 626


>gi|254286721|ref|ZP_04961675.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae AM-19226]
 gi|150423148|gb|EDN15095.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae AM-19226]
          Length = 619

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 122/628 (19%), Positives = 254/628 (40%), Gaps = 26/628 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G     + 
Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + K+ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAKVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+ + L       SLG    + + D +   + F+L +KG  + ++   FGY I 
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410
            + +IK      + EV++ I  ++   +A +        LE+       S+DE ++    
Sbjct: 358 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             +    +       +  EV   P   Q L     K+D L+    + +     + V+++E
Sbjct: 418 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P     L+EV + V +    +K  ++     NQLV    K G+   D+    G S   
Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDK 589
              I+R    +        + V     E V     +   + VV ++   +        ++
Sbjct: 530 LQMIDR----SSPLANTVYAMVKPQEGEKVYAQAKDFDGNIVVIELNKVESKLTPAYHEQ 585

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             + L ++ ++  L  VI+ L+    + 
Sbjct: 586 IATQLERIGSQQDLAGVISVLRQNTDIE 613


>gi|251790644|ref|YP_003005365.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Dickeya zeae
           Ech1591]
 gi|247539265|gb|ACT07886.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya zeae
           Ech1591]
          Length = 626

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 123/639 (19%), Positives = 259/639 (40%), Gaps = 30/639 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++   F++ G+ D L   SG      V  Q++  S      
Sbjct: 1   MMDNLRAAANNVVLKIILALIIGSFVLTGVGDYLIRGSG-DYAAKVNGQEITRSQLEQGV 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G   ++          L  ++L  LV    + Q+  ++GL     +V  
Sbjct: 60  QNERSRQQEMLGDNFSALAANEGYMQQLRGQVLSQLVDETLVVQYAHNLGLNISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +N+F ++ ++S++ + G+    Y     K L    ++            
Sbjct: 120 AIFSVPEFQ-TNNRFDNEKYLSQVRQLGLTPDAYAQFLRKQLLTQQLIRGLGNTDFVLQQ 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            LD       ++R+V    ++          S+  +  ++++ K  Y APE  ++SYI+ 
Sbjct: 179 ELDNLVAIAAQDRTVRTATIDLGARVKSQAVSDEEVKNFYDQNKARYLAPEQFKVSYIML 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      K ++  +++ A YE++K ++  PE +    +    + +A    + LKKG  F 
Sbjct: 239 DAASIMDKTKVDGNDIAAYYEQHKSEFTQPERKKYSVIQLKTEADAKAVLEQLKKGADFA 298

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+++   +    +   LG        D         L +KG  + V+  S GY+I  +
Sbjct: 299 ALAKDKSTDIVSRRNGGDLGWMDDGSTVD---EIKQAGLKQKGQVSDVVKSSVGYLIIRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++        EV+ D++ +++  KA +      ++L E  A     + ++  EK+ +I
Sbjct: 356 DDVQAQHVKELDEVRADLSEKVKREKALDAFYSLQQKLSE--AASNDNESLASVEKVANI 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                D+  +D     +   P  + +L   + G++     +  V   +G   +V ++ E 
Sbjct: 414 KSVQTDWFTRDNVPAALNFQPVTQAILGGSLVGENGTPGNNSDVISVEGDRAFVLRVTEH 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L++V   V +  K  K  ++   +A +++ +  + GK   D     G S    
Sbjct: 474 KPETTQPLDQVREQVVQSLKRQKAEQQAKVEAEKILADLYQ-GKT--DSMAAAGLSFSAA 530

Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIE----NGLSYVVFKVTNSKVGPVQ 585
            +++ M   +          VF+   P +    + +       +  +V       V P  
Sbjct: 531 KEMSSMGQTD-----ALAETVFAMAQPKKDKPSYAVAQDQSGNIVLIVLDAVKPHVLPDA 585

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +K +F + + Q     L D+++  L+SQ  +   +   +
Sbjct: 586 QKKQFGAQIEQSNVGALFDTLMTSLRSQAKIKYGNAAQE 624


>gi|50120091|ref|YP_049258.1| peptidyl-prolyl cis-trans isomerase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610617|emb|CAG74062.1| peptidyl-prolyl cis-trans isomerase D [Pectobacterium atrosepticum
           SCRI1043]
          Length = 626

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 126/640 (19%), Positives = 265/640 (41%), Gaps = 30/640 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++   F++ G+ D L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSG-DYAAKVNGQEITRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G   +   S       L ++ L  L+    LDQ+   +GL     ++  
Sbjct: 60  QNERSRQQETLGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDAQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +N+F ++ ++ ++ R G+    Y     K L+   ++  F         
Sbjct: 120 AIFDVPAFQ-TNNRFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNTAFLLPQ 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   +   ++R V    ++          ++  +  ++++ K N+ APE  ++SYI  
Sbjct: 179 EIDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEVQSYYDQNKGNFIAPEEFKVSYITL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D       +++ +  +   YE+NK  Y  PE +    +   N+ EA     SLK+G  F 
Sbjct: 239 DAASIMDSVKVDDKAINDFYEQNKNDYSQPERKKFSVIQVKNEAEAASVLDSLKQGGDFA 298

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   LG   +  + D         L +KG  +  I  S GY+I  +
Sbjct: 299 ALAKEKSTDIISRRNGGDLGWMDENSMID---ELKQAKLTEKGQVSAAIKSSVGYLIVRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P       EV+ +IA +++  KA +      +++ E  A     + ++  E+  S+
Sbjct: 356 DDVQPQQVKPLSEVRAEIAEKVKHEKAQDGYYALQQKISE--AASNDNESLASAEEAASV 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                ++  ++     +   P  + +    + G++     +  V   DG   +V +I E 
Sbjct: 414 KAAQTEWFTREKVPAVLNFQPVTQAIFSGALLGENGAAGNNSDVINVDGDRAFVLRITEH 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   R L++V T++ +  K  K  ++    A +++ E  K+GK+  D  K  G S    
Sbjct: 474 KPESTRPLDQVRTEIVEALKRQKAEQQARVDAEKILAEL-KQGKD--DALKAAGLSFGEA 530

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVGPV--Q 585
             ++ +       G      +F+ P             +   + V+  + +     +  +
Sbjct: 531 KTMSSISQ-----GDATAEAIFAMPHPQKDKPSYAITQDQAGNIVLAALDSVTPHQLNDE 585

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +K +F S + Q     L DS+++ L+S+  + + +   ++
Sbjct: 586 QKTQFASQVQQGSLGALFDSLLSSLRSEAKIKMGNAAQEQ 625


>gi|229515304|ref|ZP_04404764.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TMA 21]
 gi|229348009|gb|EEO12968.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TMA 21]
          Length = 619

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 121/627 (19%), Positives = 253/627 (40%), Gaps = 24/627 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G     + 
Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + ++  Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAQVSVDDEAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+ + L       SLG    + + D +   + F+L +KG  + ++   FGY I 
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410
            + +IK      + EV++ I  ++   +A +        LE+       S+DE ++    
Sbjct: 358 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             +    +       +  EV   P   Q L     K+D L+    + +     + V+++E
Sbjct: 418 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P     L+EV + V +    +K  ++     NQLV    K G+   D+    G S   
Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
              I+R              Q   G     +    +  +  +      SK+ P    ++ 
Sbjct: 530 LQMIDRSSPLANTVYAMVKPQ--EGEKVYAQAKDFDGNIVVIELSKVESKLTPA-YHEQI 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + L ++ ++  L  VI+ L+    + 
Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613


>gi|294635328|ref|ZP_06713825.1| peptidylprolyl cis-trans isomerase D [Edwardsiella tarda ATCC
           23685]
 gi|291091304|gb|EFE23865.1| peptidylprolyl cis-trans isomerase D [Edwardsiella tarda ATCC
           23685]
          Length = 626

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 116/640 (18%), Positives = 256/640 (40%), Gaps = 29/640 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V K+ L ++ + F++ G+ + L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSG-DYAAKVDGQEISRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G   +           L +++L  ++    LDQ+ + + L     +V  
Sbjct: 60  QNERSRLQQQLGDQFSVLAGNEGYMKELRQQVLSRMIDDVLLDQYAKKLNLAISDAQVKE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   DN F +  ++  +AR G+    Y     + L    ++  F         
Sbjct: 120 AIRTLPYFQ-TDNHFDNAKYLEMVARLGLTPDSYAQLMRQQLVTQQLIQGFTATGFTLPS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +        + R ++   ++ + +      S+A L  +++++++++ APE  R+SYI  
Sbjct: 179 EVSSLAALTMQQRLINLATIDIKQLMPQQKVSDAELQGYYQQHQNSFIAPEAVRVSYIEM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      K+ +S+ E+ A Y+++K  +  PE      +   ++ EA    + L KG  F 
Sbjct: 239 DAAAINDKMTVSDAEISAYYDQHKRSFTQPERNKYSVIQVKSEAEAKAIAEQLAKGADFA 298

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E    +    +   LG    E  P   L      L  KG  +  I  S GY+I  +
Sbjct: 299 TLAKEHSSDIISRKNGGELGWMEPESTPQEILN---AKLTTKGQVSAPIASSVGYLIVRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P+      EV+  IA++++  K+ +      +++ +  A  +  D ++  E+    
Sbjct: 356 DDMQPAVIKPLSEVRAAIADKVKQQKSLDAFYAMQQKVSD--AATSDNDSLAGAEEAAGA 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  +D     +   P  + +    +FG++     +  V   +G   +V ++   
Sbjct: 414 KATETAWFTRDSVPAALNFKPVVQAIFDGSLFGENGTPGSNSDVISVEGDRAFVLRVSAH 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   +  ++V   V +  K  K   +  S+  +L+    + GK      +  G S    
Sbjct: 474 KPEAVKPFDQVRDQVTELLKRQKAIAQARSEGEKLLAAL-QAGKG-DAALQAAGLSFGAE 531

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVGP--VQ 585
             + R  ++ +      +  VF+ P       V     +   + V+ ++   K G    +
Sbjct: 532 QTLTRASDDRQL-----VDTVFALPHPQANKPVYGLSEDRQDNIVLIRLNAVKAGQLTAE 586

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           E+  F S +         ++++  L++   + +      +
Sbjct: 587 EQKAFASQMLTGETGITFEALMDNLRANGKIKLGAAAEMQ 626


>gi|229521840|ref|ZP_04411257.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TM
           11079-80]
 gi|229340765|gb|EEO05770.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TM
           11079-80]
          Length = 619

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 121/627 (19%), Positives = 252/627 (40%), Gaps = 24/627 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G     + 
Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+ + L       SLG    + + D +   + F+L +KG  + ++   FGY I 
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410
            + +IK      + EV++ I  ++   +A +        LE+       S+DE ++    
Sbjct: 358 RLDDIKTPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             +    +       +  EV   P   Q L     K+D L+    + +     + V+++E
Sbjct: 418 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P     L+EV + V +    +K  ++     NQLV    K G+   D+    G S   
Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
              I+R              Q   G     +    +  +  +      SK+ P    ++ 
Sbjct: 530 LQMIDRSSPLANTVYAMVKPQ--EGEKVYAQAKDFDGNIVVIELSKVESKLTPA-YHEQI 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + L ++ ++  L  VI+ L+    + 
Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613


>gi|261210559|ref|ZP_05924852.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC341]
 gi|260840344|gb|EEX66915.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC341]
          Length = 619

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 122/627 (19%), Positives = 256/627 (40%), Gaps = 24/627 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   K+ L ++ + F+  G+ + L S  G++T   VG+ ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKVILGLIILSFIFAGVGNYLIS-GGNNTAAKVGKAEISRGDFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++  A         K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDQQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +  +F  +++ + L R G     + ++  K L R  ++    G       
Sbjct: 120 MILEMPQFQSQ-GQFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMSALQGSEFSLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLADFAKKVTLSDDDIQQYYKANTERFTRPEQMKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                +K+I I ++  Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADALKKQIMIDDEAAQEYYQEHLDKYSTAEQRKVSHILVEGSDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  +A+E+    G +    SLG   ++ + D +   + F+L + G  + ++   FGY I 
Sbjct: 299 FATVAKEKSQDVGSAQEGGSLGWIERDTM-DPAFEAAAFALTENGQISGLVKSEFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410
            +  +K      + EV + I  ++   +A +        LE+       S+DE ++    
Sbjct: 358 RLDEVKAPVVKPYSEVVEAIKQELIDQQALDTFYAKQSELEKLAFEHSDSLDEAAKAISA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                  +       +  E+ A P   Q+L     K+D L+    + +     + V+++E
Sbjct: 418 TVEHTDFISAE----QAPELLATPAVLQVLKTPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           S P     LEEV   V +    +K  ++     NQLV    K G+   D+    G +   
Sbjct: 473 SRPETVLPLEEVKPQVVEQLSRMKGEQQALELGNQLVASL-KSGET--DVLAENGVAFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
              I+R              Q   G     +    +  +  +      SKV P    ++ 
Sbjct: 530 LQMIDRSSPLANTVYAMVKPQ--DGAKGYAQAKDFDGNVVVIELDKVESKVTPA-YHEQI 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + L+++ ++  L  VI+ L+    + 
Sbjct: 587 ATQLSRIGSQQDLAGVISVLRQNTEIE 613


>gi|49474119|ref|YP_032161.1| peptidyl-prolyl cis-trans isomerase protein [Bartonella quintana
           str. Toulouse]
 gi|49239623|emb|CAF25982.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella quintana
           str. Toulouse]
          Length = 629

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 149/628 (23%), Positives = 296/628 (47%), Gaps = 16/628 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML IIR A+ +WVA+IFLV L + F+  WG+            ++S G   +    +  +
Sbjct: 1   MLNIIRNATNSWVARIFLVSLLLCFIFLWGIPQ--LHTKSERDLISSGESTITVDDYHLA 58

Query: 60  WKQELGMIS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              +   ++    +G +      +   +   +   L      D+    + +      +  
Sbjct: 59  LADQSSRLALASHLGRMFTPNEMQQYQIPTFVFSQLQQDVLFDEETRQMKINLSKDAIAR 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +    +F   +  F+ ++F + L +  I+E  ++D+YTK   R  ++   + GM+  + 
Sbjct: 119 SLGADNMFQ-INGVFNQNLFRNYLQQLHISESNFLDYYTKKEKRKQLIAASLSGMKAPDF 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                  +  E R  DY+VL+ +    I+DP    L +WFE +K+ +R PEY+ +S +  
Sbjct: 178 FYKALALYQGETRIADYLVLDLKEKKTISDPDQETLQKWFETHKNEFRVPEYRTVSLLSM 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
            + +  K  +IS DE +A Y +N  ++ +PE RT+E+L FP ++ AD A + +  G  F 
Sbjct: 238 KLAKFIKPEDISEDEARAYYTQNTSRFIAPEKRTIEELRFPTREAADNAAKKIADGLSFD 297

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            L + + K+L+DI  G  ++  +P+  LA  IF L K+G  + VI+   G VI  V++I 
Sbjct: 298 DLVKAEKKTLNDIKKGPLAESELPNR-LASEIFEL-KQGQVSAVINDLQGPVIIRVTSIV 355

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           PS  + F+ V+++I   +   +A++ ++ +Y  +E     G S+ E++ + K+    +  
Sbjct: 356 PSSPIPFENVEENIRQMLAKNRAADDMRNNYTAIENARFEGASLKELADQYKLPLRTI-T 414

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           +D  GK  +G  +  +P K+ LL  ++  ++    D  ++L  G Y+W ++   IPARD+
Sbjct: 415 IDKTGKTSEGTILIDLPEKDILLNSIYQSNEGADLD-PLSLQGGGYLWYKVDTIIPARDK 473

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             EE   +    WK+ +    +  KA    L+    G++   +   LG +  TT  + R 
Sbjct: 474 TFEEAKQNAIVQWKSEEIQRLLDEKAKD-ALKQLTAGQSLVSLAHILGVTKQTTQPLRRQ 532

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISY 593
           D+ ++ FG +GI  +FS               + +++++    +              + 
Sbjct: 533 DS-SEIFGLEGIKALFSDSKGHYGIVKGPVATNRILYQIKEVTMPKDFTAQTLSPDIRTN 591

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
           + +M+ +DL   ++     ++ + ++  
Sbjct: 592 IDRMIREDLKLEMLQVANKKHPLKINSA 619


>gi|261822503|ref|YP_003260609.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Pectobacterium
           wasabiae WPP163]
 gi|261606516|gb|ACX89002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           wasabiae WPP163]
          Length = 627

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 126/639 (19%), Positives = 259/639 (40%), Gaps = 30/639 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++   F++ G+ D L   SG      V  Q++       + 
Sbjct: 1   MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSG-DYAAKVNGQEITRGQLEQAV 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G   +   S       L K+ L  L+    LDQ+   +GL     ++  
Sbjct: 60  QNERSRQQEALGENFSILASNDGYMQQLRKQALSQLIDETLLDQYANKLGLNISDEQIRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +  F ++ ++ ++ R G+    Y     K L+   ++  F         
Sbjct: 120 AIFDVPAFQ-TNKHFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNTAFLLPQ 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   +   ++R V    ++          ++  +  ++++ K  + APE  ++SYI  
Sbjct: 179 EIDNLVKLAAQDRVVRVATIDVAAKAKALTVADDEVQSYYDQNKGRFIAPEEFKVSYITL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D       ++I +  +   YE+NK  Y  PE +    +   N+ +A     +LK+G  F 
Sbjct: 239 DAASIMDNVKIDDKAINDFYEQNKNDYSQPERKKFSVIQVKNEADATSVLDALKQGGDFA 298

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   LG   +    D         LA+KG  +  I  S GY+I  +
Sbjct: 299 TLAKEKSTDIISRRNGGDLGWMDENSTID---ELKQAKLAEKGQVSSAIKSSVGYLIVRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++P       +V+ +IA +++  KA +      +++ E  A     + ++  E+   I
Sbjct: 356 DDVQPQQVKPLSDVRAEIAEKVKHEKAQDGFYALQQKVSE--AASNDNESLASAEEAAGI 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                D+  ++     +   P  + +    + G++     +  V   DG   +V +I E 
Sbjct: 414 KATQTDWFTREQVPAALNFKPVTQSIFNGALLGENGAAGNNSDVINVDGDRAFVLRITEY 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   R L++V T++ +  K  K  ++    A +++ E  K+GK+  D  K  G S    
Sbjct: 474 RPESTRPLDQVRTEIVEALKRQKAEQQARVDAEKILAEL-KQGKD--DALKAAGLSFGQA 530

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVGPV--Q 585
             ++ +       G      +F+ P             +   + V+  + +     +  +
Sbjct: 531 KTLSSISQ-----GDATAEAIFAMPHPEKDKPSYTITQDQAGNIVLAALDSVTPHQLNDE 585

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +K +F S + Q     L DS+++ L+S+  + + +   Q
Sbjct: 586 QKTQFASQVQQGSLGALFDSLLSSLRSEAKIKMGNAAAQ 624


>gi|153831363|ref|ZP_01984030.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 623-39]
 gi|229529056|ref|ZP_04418446.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae 12129(1)]
 gi|148873155|gb|EDL71290.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 623-39]
 gi|229332830|gb|EEN98316.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae 12129(1)]
          Length = 619

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 121/627 (19%), Positives = 251/627 (40%), Gaps = 24/627 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G       
Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+ + L       SLG    + + D +   + F+L +KG  + ++   FGY I 
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410
            + +IK      + EV++ I  ++   +A +        LE+       S+DE ++    
Sbjct: 358 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             +    +       +  EV   P   Q L     K+D L+    + +     + V+++E
Sbjct: 418 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P     L+EV + V +    +K  ++     NQLV    K G+   D+    G S   
Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
              I+R              Q   G     +    +  +  +      SK+ P    ++ 
Sbjct: 530 LQMIDRSSPLANTVYAMVKPQ--EGEKVYAQAKDFDGNIVVIELSKVESKLTPA-YHEQI 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + L ++ ++  L  VI+ L+    + 
Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613


>gi|304395503|ref|ZP_07377386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB]
 gi|304356797|gb|EFM21161.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB]
          Length = 622

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 111/626 (17%), Positives = 249/626 (39%), Gaps = 21/626 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R AS   V KI L ++ V F++ G+ + L     +     V  Q++       ++
Sbjct: 1   MMDNLRAASNNVVLKIILGLIMVSFVLTGVGNYLIG-GNNDYAAKVNGQEISRGQLEQAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E     Q +G   +   S       + ++ L  L+  A LD +I+D+ L     +V  
Sbjct: 60  NSERSRQQQMLGDQFSQLASNDGYMQQIRQQALSQLIDQALLDSYIKDLHLSISDDQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     F   + KF +  +++ +   G +  +Y +   K LS   ++            
Sbjct: 120 AIFNQQAFQ-TNGKFDNAKYLALIGNMGFSADQYAEALRKQLSNQQLINAVANTDFTLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              +      + R +    L+   + A    ++  ++Q+++++K ++ APE  R+SYIL 
Sbjct: 179 EASKLVDLVSQQRDIRQATLDVNALAAKQTVTDDEISQYYQQHKTSFMAPEQFRVSYILM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      + + S  ++QA Y+++K  Y  P+      +    + +A+     LK G  F 
Sbjct: 239 DAASM--QQDASEADIQAWYDQHKADYTQPQRTRYSVIQTKTEADANAVLAQLKGGASFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            +A+ +            +G       PD         L +KG  + VI  S G+++  +
Sbjct: 297 DVAKAKSIDPISARKGGDMGWLEPSTTPD---ELKNAGLTQKGQMSGVIKSSVGFLVVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P       +V+  IA +++  K  +   +  +++ E  A     + ++  E+   +
Sbjct: 354 DDIQPEQVKPLNDVRSAIAAKVKQEKGVDAFYKLQQKVSE--AASNDNESLAGAEQASGL 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  +D     +     K+ +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KAKETGWFSQDTLPDALNFDAVKQAIFNGGLVGQNGAPGNNSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L++V   +    K  K  ++  ++A++L+ +  K GK  +D     G +L  +
Sbjct: 472 KPEAVKPLDQVKAQITDTLKHDKATQQAKAQADKLLTDL-KAGK--QDALTAAGLTLSAS 528

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
             ++R   +        + Q             ++  +  V      +   P  + D+ +
Sbjct: 529 KTVDRNAQDPVAQAAFNLPQPAENKPSWGVSEDMQGNVVLVAVDKVKTGSMPQAQIDEMV 588

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVT 617
             +TQ   +   ++++  L+ +  + 
Sbjct: 589 KGVTQNNAQLTFEALLQNLRKEAKIK 614


>gi|15641920|ref|NP_231552.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121591616|ref|ZP_01678864.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 2740-80]
 gi|121727851|ref|ZP_01680918.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae V52]
 gi|147674490|ref|YP_001217451.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae O395]
 gi|153820108|ref|ZP_01972775.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae NCTC 8457]
 gi|153823840|ref|ZP_01976507.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae B33]
 gi|227082048|ref|YP_002810599.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae M66-2]
 gi|229507986|ref|ZP_04397491.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae BX
           330286]
 gi|229511777|ref|ZP_04401256.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae B33]
 gi|229518914|ref|ZP_04408357.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC9]
 gi|229607532|ref|YP_002878180.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae MJ-1236]
 gi|254849006|ref|ZP_05238356.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MO10]
 gi|255745323|ref|ZP_05419272.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholera CIRS 101]
 gi|262156047|ref|ZP_06029167.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae INDRE
           91/1]
 gi|262167880|ref|ZP_06035580.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC27]
 gi|298498044|ref|ZP_07007851.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MAK 757]
 gi|9656453|gb|AAF95066.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546529|gb|EAX56737.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 2740-80]
 gi|121629887|gb|EAX62301.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae V52]
 gi|126509350|gb|EAZ71944.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae NCTC 8457]
 gi|126518637|gb|EAZ75860.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae B33]
 gi|146316373|gb|ABQ20912.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae O395]
 gi|227009936|gb|ACP06148.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae M66-2]
 gi|227013816|gb|ACP10026.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O395]
 gi|229343603|gb|EEO08578.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC9]
 gi|229351742|gb|EEO16683.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae B33]
 gi|229355491|gb|EEO20412.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae BX
           330286]
 gi|229370187|gb|ACQ60610.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae MJ-1236]
 gi|254844711|gb|EET23125.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MO10]
 gi|255737153|gb|EET92549.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholera CIRS 101]
 gi|262023607|gb|EEY42308.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC27]
 gi|262030225|gb|EEY48869.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae INDRE
           91/1]
 gi|297542377|gb|EFH78427.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MAK 757]
          Length = 619

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 121/627 (19%), Positives = 250/627 (39%), Gaps = 24/627 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++  A         K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G       
Sbjct: 120 LILEIPQFQSQ-GVFDSTAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+ + L       SLG    + + D +   + F+L +KG  + ++   FGY I 
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410
            + +IK      + EV++ I  ++   +A +        LE+       S+DE ++    
Sbjct: 358 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             +    +       +  EV   P   Q L     K+D L+    + +     + V+++E
Sbjct: 418 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P     L+EV + V +    +K  ++     NQLV    K G+   D+    G S   
Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
              I+R              Q   G     +    +  +  +      SK+ P    ++ 
Sbjct: 530 LQMIDRSSPLANTVYAMVKPQ--EGEKVYAQAKDFDGNIVVIELSKVESKLTPA-YHEQI 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + L ++ ++  L  VI+ L+    + 
Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613


>gi|297579436|ref|ZP_06941364.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae RC385]
 gi|297537030|gb|EFH75863.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae RC385]
          Length = 619

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 121/627 (19%), Positives = 250/627 (39%), Gaps = 24/627 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G       
Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+ + L       SLG    + + D +   + F+L +KG  + ++   FGY I 
Sbjct: 299 FATLAKEKSQDLGSAEEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410
            +  IK      + EV++ I  ++   +A +        LE+       S+DE ++    
Sbjct: 358 RLDEIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             +    +       +  EV   P   Q L     K+D L+    + +     + V+++E
Sbjct: 418 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P     L+EV + V +    +K  ++     NQLV    K G+   D+    G S   
Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
              I+R              Q   G     +    +  +  +      SK+ P    ++ 
Sbjct: 530 LQMIDRSSPLANTVYAMVKPQ--EGEKVYAQAKDFDGNIVVIELSKVESKLTPA-YHEQI 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + L ++ ++  L  VI+ L+    + 
Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613


>gi|308185912|ref|YP_003930043.1| peptidyl-prolyl cis-trans isomerase D [Pantoea vagans C9-1]
 gi|308056422|gb|ADO08594.1| peptidyl-prolyl cis-trans isomerase D [Pantoea vagans C9-1]
          Length = 622

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 115/632 (18%), Positives = 254/632 (40%), Gaps = 33/632 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R AS   V KI L ++ V F++ G+ + L     +     V  Q++       ++
Sbjct: 1   MMDNLRAASNHVVLKIILGLIIVSFVLTGVGNYLIG-GNNDYAAKVNGQEISRGQLEQAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E     Q +G   +   S       + ++ L  L+  A LD +I+++ L     +V  
Sbjct: 60  NSERSRQQQMLGDQFSQLASNDGFMQQMRQQALSQLIDQALLDSYIKELHLSISDDQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     F   + KF +  +++ +   G +  +Y +   K LS   ++            
Sbjct: 120 AIFNQQAFQ-TNGKFDNAKYLALIGNMGFSADQYAEALRKQLSNQQLINAVANTDFTLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              +      + R +    L+   + A    ++  ++Q+++++K ++ APE  R+SYIL 
Sbjct: 179 EASKLVDLVSQQRDIRQATLDVNALMAKQTVTDDEISQYYQQHKTSFMAPEQFRVSYILM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      + + S  ++QA Y+++K  Y  P+      +    + +A+     LK G  F 
Sbjct: 239 DAASM--QQDASEADIQAWYDQHKADYSQPQRNRYSVIQTKTEADANAVLAQLKGGANFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            +A+ +            +G       PD         L +KG  + VI  S G+++  +
Sbjct: 297 DVAKAKSIDPISARKGGDMGWLEPSTTPD---ELKNAGLTEKGQMSGVIKSSVGFLVVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P       EV+  +A +++  K  +   +  +++ E  A     + ++  E+   +
Sbjct: 354 DDIQPEQVKPLDEVRSAVAAKVKQEKGVDAFYKLQQKVSE--AASNDNESLAGAEQASGL 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  +D     +     K+ +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KAKETGWFSQDTLPDALNFDAVKQAIFNGGLVGQNGAPGNNSDIITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + LE+V   +    K  K  ++  ++A++L+ +  K GK   D     G +L  +
Sbjct: 472 KPEAVKPLEQVKAQITDTLKHDKATQQAKAQADKLLTDL-KAGK--LDALTAAGLTLSVS 528

Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQ 585
             ++R   +            F+   P +    + +   +  + V+  V   K G  P  
Sbjct: 529 KTVDRNAQD------PVAQAAFNLPQPADNKPSWGVSEDMQGNVVLVAVDKVKTGSMPQA 582

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           + D+ +  +TQ   +   ++++  L+ +  + 
Sbjct: 583 QIDEMVKGVTQNNAQLTFEALLQNLRKEAKIK 614


>gi|312882503|ref|ZP_07742244.1| peptidyl-prolyl cis-trans isomerase D [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369903|gb|EFP97414.1| peptidyl-prolyl cis-trans isomerase D [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 619

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 125/630 (19%), Positives = 258/630 (40%), Gaps = 30/630 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E +R+ +     K+ L V+ + F+  G+S  + S + SS    VG  ++    F   +
Sbjct: 1   MMERMREGASGVAVKVILGVIILSFVFTGVSGYIGSGASSS-AAKVGNDEISRGDFEREY 59

Query: 61  KQELGMISQKIGFVVNSERARSV---GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + +   +  ++G   ++  A         K +LD ++    +++  E +GL     +V  
Sbjct: 60  QNQRNQMQAQLGDYFSNLLADQNYVNTFRKSVLDRMIDDKLIERHAESLGLRVSDAQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           +I   P F   + KF  DV+ + L R G     + +   K + R  +     G       
Sbjct: 120 QIFEFPQFQ-VEGKFDEDVYQATLRRAGFTAHTFSEDLRKNILREQLRNAIEGTDFSLAG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R V  I L+          S+  +  +++++   Y  PE  +++YI  
Sbjct: 179 EVESQSKLISQTRDVKKITLSLSDFAKKVKLSDEEINDYYQQHTSQYTRPEQMKVAYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
              + +  I +S+++ +A Y+ N +KY S E R V  ++    N+++A +    L  G  
Sbjct: 239 SAEKLKNNIVVSDNDAKAYYQDNIDKYTSEEQRRVSHILIQGDNKEKAQKVLDKLNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E  + +       SLG   ++ + D     + F+L + G+ T ++   FGY I 
Sbjct: 299 FATLAKEDSEDVGSAEEGGSLGWIERD-VMDPEFEKAAFALKQPGETTGLVKSEFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRREKI 410
            +  +K   T S++ V+K I  +++  KA+++      +LE +      S+D  +   K 
Sbjct: 358 KLDELKAPETESYETVEKAIKQELKDQKAADEFYALQAQLETQAYESPDSLDAAAEAIKA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                  +     D    ++       Q L     K+D L+    + +     + V+I +
Sbjct: 418 NIQTTDFIS----DANAPDLLKSAPVLQALANPEVKEDGLN-SEVIEIAPEHVLVVRIND 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           + P +   L EV  DV +    VK  E     A  +V E  K GK   D+ K  G     
Sbjct: 473 TRPEKLLPLSEVRDDVVEAATEVKAKESAEKLAISIVEEL-KSGK--EDLLKKYGLQFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVGPVQE-K 587
              ++R            +    + P +    +    +    +++  +T     P ++ +
Sbjct: 530 AESLDRSS------PIANVVFAMTKPTDGKIEYTQLRDLNGDFLIVGLTQVVSKPNKQYE 583

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           ++  + LT+   +     +I  L+++  + 
Sbjct: 584 EQIKAQLTRTNAQQDFTGLIKILRNETDIQ 613


>gi|229523938|ref|ZP_04413343.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae bv.
           albensis VL426]
 gi|229337519|gb|EEO02536.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae bv.
           albensis VL426]
          Length = 619

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 121/627 (19%), Positives = 250/627 (39%), Gaps = 24/627 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G       
Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+ + L       SLG    + + D +   + F+L +KG  + ++   FGY I 
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410
            + +IK        EV++ I  ++   +A +        LE+       S+DE ++    
Sbjct: 358 RLDDIKAPVVKPCSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             +    +       +  EV   P   Q L     K+D L+    + +     + V+++E
Sbjct: 418 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P     L+EV + V +    +K  ++     NQLV    K G+   D+    G S   
Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
              I+R              Q   G     +    +  +  +      SK+ P    ++ 
Sbjct: 530 LQMIDRSSPLANTVYAMVKPQ--EGEKVYAQAKDFDGNIVVIELSKVESKLTPA-YHEQI 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + L ++ ++  L  VI+ L+    + 
Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613


>gi|260366277|ref|ZP_05778733.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           K5030]
 gi|308114046|gb|EFO51586.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           K5030]
          Length = 555

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 103/548 (18%), Positives = 233/548 (42%), Gaps = 21/548 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   L + S  ++   VG  ++P   F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSN-NSAAKVGNTEIPRGEFEMAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +++   LDQ  E +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   + +F  +++ + L R G +   + ++  + L R  ++            
Sbjct: 120 MILEMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLTALQSSEFTLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +    + + + R +  + ++        + ++  +  +++   DN+  PE  ++SY+  
Sbjct: 179 EVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                +K+I++++++++  Y+++ +KY S E R V  ++    ++ +A      L  G  
Sbjct: 239 SAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGAD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  +A+E+    G + +   LG   ++ + D +  ++ F+L   GD + ++   FGY I 
Sbjct: 299 FAAVAQEKSDDFGSAENGGDLGWIERD-VMDPAFEEAAFALKNPGDMSGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K +    F EV  +I  ++   KA ++  E    LE        S+D+ S   K 
Sbjct: 358 KLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELERVAFEYPDSLDDAS---KA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           ++ ++   DF  + V   EV       Q L     K+D L+    + +     + V++++
Sbjct: 415 INQEVKTTDFISQ-VDAPEVLRNQAVMQALLSPEVKEDGLN-SEAIEVAPEHIIVVRVED 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           S       L EV   V  +   VK  +       ++V   ++       +      +   
Sbjct: 473 SRDETVLPLAEVKDQVVAELSRVKGEQGALELGTKVVAALNEGNT---AVLAENNLTFGE 529

Query: 531 TNQINRMD 538
              ++R  
Sbjct: 530 QETVDRRS 537



 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 108/304 (35%), Gaps = 14/304 (4%)

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
           I L  F+K+ +         +  A   +FT        YV      +K    V+ ++VKK
Sbjct: 198 IDLAEFAKK-VELTDEEIQAYYKANPDNFTRPEQVKVSYVELSAEALKKQIQVTDEDVKK 256

Query: 370 DIANQMRI--TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
                +    ++   +V       ++       +DE++      ++     D  G    G
Sbjct: 257 YYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGADFAAVAQEKSDDFGSAENG 316

Query: 428 KEVAAIP---YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
            ++  I             F   +P      V   D  Y  ++++E   A  +  +EV  
Sbjct: 317 GDLGWIERDVMDPAFEEAAFALKNPGDMSGLVK-SDFGYHIIKLEELKDAVAKPFDEVAA 375

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
           ++K++    K  ++     N+L     +   +  D  K +   + TT+ I+++D      
Sbjct: 376 EIKQELVDQKAVDQFYELQNELERVAFEYPDSLDDASKAINQEVKTTDFISQVDAPEVLR 435

Query: 545 GYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQM 597
               +  + S  V    +            +V +V +S+    +   + KD+ ++ L+++
Sbjct: 436 NQAVMQALLSPEVKEDGLNSEAIEVAPEHIIVVRVEDSRDETVLPLAEVKDQVVAELSRV 495

Query: 598 MNKD 601
             + 
Sbjct: 496 KGEQ 499


>gi|271499601|ref|YP_003332626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech586]
 gi|270343156|gb|ACZ75921.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech586]
          Length = 626

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 121/639 (18%), Positives = 258/639 (40%), Gaps = 30/639 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V K+ L ++   F++ G+ D L   SG      V  Q++  S      
Sbjct: 1   MMDNLRAAANNVVLKVILALIIGSFVLTGVGDYLIRGSG-DYAAKVNGQEITRSQLEQGV 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G   ++          L K++L  L+    + Q+   +GL     ++  
Sbjct: 60  QNERNRQQEMLGDNFSALAANEGYMQQLRKQVLSQLIDETLVVQYAHTLGLNISDEQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +N+F +D +++++ + G+    Y     K L    ++            
Sbjct: 120 AIFSVPEFQ-TNNRFDNDKYLAQVRQMGLTPDAYAQFLRKQLLTQQLIRGLGSTDFVLQQ 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            LD       ++R++    L+          S+  +  ++++ K  Y APE  ++SYI+ 
Sbjct: 179 ELDNLVAMAAQDRTIRTATLDLGVRARSQTVSDDEVKNFYDQNKSRYLAPEQFKVSYIML 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      K ++ N+++ A YE++K ++  PE +    +    + +A      LKKG  F 
Sbjct: 239 DAASIMDKTKVDNNDIAAYYEQHKGEFTQPERKKYSVIQLKTEADAKVVLDQLKKGADFA 298

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   LG        D         L +KG  + VI  S GY+I  +
Sbjct: 299 ALAKEKSTDIVSRRNGGDLGWMDDGSTVD---EIKQAGLKQKGQLSDVIKSSVGYLIIRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+     +  EV+ D+A +++  K+ +      +++ E  A     + +   EK+ ++
Sbjct: 356 DDIQAQRVKALDEVRADLAEKVKREKSLDAFYALQQKVSE--AASNDNESLVSAEKVANV 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                D+  +D     +   P  + +L   + G++     +  V   +G   +V ++ + 
Sbjct: 414 KAVQTDWFTRDNVPAALNFQPVTQAILGGSLVGENGTPGNNSDVISVEGDRAFVLRVTDH 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L++V   V +  K  K  ++    A +++ + ++ GK   D     G S    
Sbjct: 474 KPEATQPLDKVRDQVVQSLKRQKAEQQARVDAEKILADLNQ-GKT--DSMTAAGLSFSAA 530

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVGPV--Q 585
             I+ +   +          VF+ P             +   + V+  +   K   +   
Sbjct: 531 KVISSIGQTDALS-----ETVFAMPQPKKDKPSYAVAQDQAGNIVLVALDAVKPHALSDD 585

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +K +F + + Q     L D+++  L+SQ  + + +   +
Sbjct: 586 QKKQFGNQIEQSSVGALFDTLLTSLRSQAKIKLGNAAQE 624


>gi|71907562|ref|YP_285149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
 gi|71847183|gb|AAZ46679.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
          Length = 628

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 111/645 (17%), Positives = 265/645 (41%), Gaps = 42/645 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + +R   R  + ++FL ++ +PF  +G+   + S      V S+G  K+    F  + 
Sbjct: 1   MFDAVRNNKR--IVQVFLALITLPFAFFGVDSYMRSAGSGGDVASIGDIKITQQQFQQTL 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   +  ++G   +++   +    + ILD+L++   L        +   +  +   I 
Sbjct: 59  REQQERLRTQLGAQFDAKMLDNPEARRAILDDLINQRLLLVEASKKHMSVSNDAIRQTIG 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F   D KFS + + + L  +G++   +     + L+   +          +  + D
Sbjct: 119 AIEAFK-VDGKFSTERYEAALRAQGMSPTGFEAQLRQDLTLQQLASAVGQSGLVARSVSD 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      E R V     +          ++  + +++++    ++ PE  +  Y++  + 
Sbjct: 178 RLLSLQTEKREVMEYRFSLESYLDKVKLADDAVRKFYDENGQQFQMPEQAKAEYVVLSMD 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--------EADEAFQSLKK 292
               ++ +S+ E++A Y+ +K+++ + E R    ++  ++K        +A+E    ++K
Sbjct: 238 SIGSQLSVSDAEIKAWYDGHKDRFQAAEERRASHILLASEKLGKDKAKAKAEELLAEIRK 297

Query: 293 G-KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
               F  LA+    + G +     LG F +  +   S  D+ F L K G+ + V+   FG
Sbjct: 298 NPAAFADLAKKNSDDPGSASKGGDLGFFGRGMMVK-SFEDTAFGL-KDGEISGVVESDFG 355

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406
           + I  V+ I  +      +VK +I  +++ T +S K  E  +     +     S+  ++ 
Sbjct: 356 FHIIKVTGIHAAKEKPLADVKGEIEAELKKTGSSRKFAEAAEAFSNMVYEQSDSLKPVAE 415

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSYM 464
           + K+    +   D+ G+  +      +   E+++  +F  D   +K +T  V +   + +
Sbjct: 416 KFKL---TIKQSDWLGR--QANPANGVLGNEKIMAALFSDDSVKNKRNTEAVEIAPNTLV 470

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
             ++ +  P   +  + V   ++   K  K A+ ++SK  +  LE  K+G++        
Sbjct: 471 AARLIDYKPTALQPFDGVKAGIETMLKR-KEAQVLASKDGEARLEALKKGED-------- 521

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVG 582
             +      ++R+D+            VF      +  +      G  Y ++K++    G
Sbjct: 522 KLNWGAAKSVSRLDSR--LIPPPAAQSVFRMETGKLPAYTGVELPGTGYALYKLSKVVAG 579

Query: 583 P---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                  K   +  L  ++ K+ +   +A L+S+Y V V+   ++
Sbjct: 580 ENLDEASKKGMLQQLGNLVAKEEVQLYLAALRSRYKVEVNQAALE 624


>gi|145298875|ref|YP_001141716.1| peptidyl-prolyl cis-trans isomerase D [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851647|gb|ABO89968.1| peptidyl-prolyl cis-trans isomerase D [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 637

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 123/637 (19%), Positives = 253/637 (39%), Gaps = 31/637 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ ++  VAK+ L ++ + F + G+   L   + ++   +V    +  ++  N++
Sbjct: 2   MLDKLREGAQGKVAKVILGLIILSFALAGVGSYLNGPARTAP-ATVNGNDISSAALENAY 60

Query: 61  KQELGMISQKIGFVVNSERA---RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   A         + +LD L+  A  D    ++GL     ++  
Sbjct: 61  RNERARMESQMGESFSQLAANPDYMKQFRRGVLDRLIDQALFDSKARELGLRVSDEQIKQ 120

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +D KF++D ++  + R G+  + + D   + + R  ++G  +G       
Sbjct: 121 AIIAMPEF-AEDGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMGALLGTEFALKG 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +Q  + Y + R +  + L           S+  + Q+++     +   E  ++ Y+L 
Sbjct: 180 EAEQLDKLYNQTRDLRLVRLAAAAYLGDVQVSDQEVEQYYKTNSARFMNDEKVKVDYLLL 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290
           D     K I+++  + +  Y+++++ +   E R V  ++ P        +K A E     
Sbjct: 240 DAANLGKDIKVTEQDAKDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEKLAGELLTKA 299

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           K G  F  LA+              L  F K  + D +   + F+L K GD + ++   F
Sbjct: 300 KGGDDFAALAKANSSDTFSAKKGGELDWFEKG-VMDPAFEQAAFALNKAGDLSNLVKSPF 358

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ +  +  ++ + T  F +V  +   +++  KA E    + +++ +  +   + D +  
Sbjct: 359 GFHVIKLLGVEAAQTKPFVDVMGETIRRLQADKAKELFFAEQQKMAD--SSFENQDSLDL 416

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
               + + +  VDF  +     E    P    + F    +DD  + D  + L DG  + +
Sbjct: 417 TADTMGLKVQSVDFFSQ-ADAPEPLNDPKVLSVAFSEQLRDDNTNSD-VIELADGKALVL 474

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
            I    P   + L E+   V    K  K +E    KA  L L+  K G+N +     LG 
Sbjct: 475 HITGYQPKAAKPLAEIKEQVIAAIKYDKASEVARGKAQGL-LDKLKAGENIQADLTALGL 533

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGP-----VEMVKCFPIENGLSYVVFKVTNSKV 581
            + T   + R     +    + ++QVF  P        V+     NG   VV        
Sbjct: 534 KMETHKGVARF---AQDMDQNLVAQVFRMPHPKDGKPSVELVAEANGDRVVVALDKVVVA 590

Query: 582 GPVQEKDKFIS-YLTQMMNKDLLDSVIAYLKSQYSVT 617
               +    +   L Q   +    S+I  L+    + 
Sbjct: 591 KEPSQMVSLLQGQLGQGKAQVSYKSLIDELRKAAKIE 627


>gi|260768943|ref|ZP_05877877.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio furnissii CIP
           102972]
 gi|260616973|gb|EEX42158.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio furnissii CIP
           102972]
          Length = 619

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 126/627 (20%), Positives = 258/627 (41%), Gaps = 24/627 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S S  +    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGSN-NAAAKVGGTEIGRGEFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++  A         K +LD +++   LDQ  + +GL     ++  
Sbjct: 60  QNERNRMQSQLGDYFSNLLADPEYVASFRKSVLDRMINDLLLDQHAQALGLRVSDTQIRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF  +++ S L R G +   + ++  + L R  ++    G       
Sbjct: 120 MILDMPQFQ-TDGKFDQEIYQSALRRAGFSPDSFAEYMRRDLVRNQLLSALQGSEFTLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++       + R +  I L+        + S+  + Q++++  + Y  PE  ++SYI  
Sbjct: 179 EVEAQGELITQTRDIRTITLSPAEFAKSIELSDDEIEQYYKQNSERYTRPEQVKLSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
              + +  I IS+++ +  YE + +KY S E R V  ++    ++K A      L  G  
Sbjct: 239 SAEQLKNAITISDEQAKQYYESHMDKYSSAEQRQVSHILIQGDDEKAAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+ + +       SLG    + + D +   + F+L K GD + ++   FGY I 
Sbjct: 299 FATLAKEKSQDIGSAEEGGSLGWIEHDTM-DPAFESAAFALKKAGDVSGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            + ++K      + EV  DI ++++  +A +K  E    LE+       S+D+ ++    
Sbjct: 358 KLDDVKAPVAKPYAEVAADIKSELKDQQAIDKFYELQTELEKVAFESPDSLDDAAKAISA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             +    V     + +  +        + +     K+D L+    + +     + V+++E
Sbjct: 418 HIVSTDFVS----EQQLPKALNNADVLKAIQSPEVKEDGLN-SEAIEVAPEHVVVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           S P     L EV   V      +K  ++  + ANQLV    K   +  +       +   
Sbjct: 473 SRPEMVLPLNEVKDQVVAQLSKLKGEQQALALANQLVDGLKKGDLSLLE---QHQLAFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
            N I+R            +++   G V   +    +  +  V      +KV P Q  ++ 
Sbjct: 530 LNMIDRSSPLAGTV--YAMAKPADGAVTYAQAKDFDGNIVVVELDKVEAKVNP-QYNEQI 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + L +M  +  L  V++ L+    + 
Sbjct: 587 GAQLARMGVQQDLAGVLSVLRQNADIK 613


>gi|307129932|ref|YP_003881948.1| peptidyl-prolyl cis-trans isomerase D [Dickeya dadantii 3937]
 gi|306527461|gb|ADM97391.1| peptidyl-prolyl cis-trans isomerase D [Dickeya dadantii 3937]
          Length = 626

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 123/639 (19%), Positives = 258/639 (40%), Gaps = 30/639 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++   F++ G+ D L   SG      V  Q++  +      
Sbjct: 1   MMDNLRAAANNVVLKIILALIIGSFVLTGVGDYLIRGSG-DYAAKVNGQEITRAQLEQGV 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G   ++          L K++L  L+    + Q+   +GL     +V  
Sbjct: 60  QNERSRQQEMLGENFSALAANEGYMQQLRKQVLSQLIDETLVVQYAHTLGLNISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +N+F +D +++++ + G+    Y     K L    ++            
Sbjct: 120 AIFSVPEFQ-TNNRFDNDKYLAQVRQLGLTPDAYAQFLRKQLLTQQLIRGLGNTDFVLQQ 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            LD       ++R++    ++          S+  +  ++++ K+ Y APE  ++SYI+ 
Sbjct: 179 ELDNLVAMASQDRTIRTATIDLSARARNQTVSDEEVKNFYDQNKNRYLAPEQFKVSYIML 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      K ++ N ++ A YE++K ++  PE +    +    + +A  A + LKKG  F 
Sbjct: 239 DAASIMDKTKVDNADIAAYYEQHKSEFTQPERKKYSVIQLKTEADAKAALEQLKKGADFA 298

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   LG        D         L +KG  + VI  S GY+I  +
Sbjct: 299 ALAKEKSTDIVSRRNGGDLGWMDDGSTVD---EIKQAGLKQKGQLSDVIKSSVGYLIIRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+     +  EV+ D+A +++  K+ +      +++ E  A     + ++  EK+ +I
Sbjct: 356 DDIQAQHVKALDEVRADLAEKVKREKSLDAFYSLQQKISE--AASNDNESLASAEKVANI 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                D+  +D     +   P  + +    + G++     +  V   +G   +V ++ E 
Sbjct: 414 KAVQTDWFTRDNVPAALNFQPVTQAIFGGSLVGENGTPGNNSDVISVEGDRAFVLRVTEH 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L++V   V +  K  K  ++   +A +++ +  + GK   D       S    
Sbjct: 474 KPETTQPLDQVREQVVQTLKRQKAEQQAKVEAEKILADLYQ-GKT--DSMTAASLSFGAA 530

Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGLSYVVFKVTNSKVGPV----Q 585
            +++     +          VF+   P +    + +    +  V  +    V P      
Sbjct: 531 KEMSSTGQTDVL-----AETVFAMQQPKKDKPSYAVAQDQAGNVVLIALDAVKPHVLSDD 585

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +K +F + L Q     L D+++  L+SQ  +       +
Sbjct: 586 QKKQFGAQLEQSSVGALFDTLLTSLRSQAKIKYGSAAQE 624


>gi|315180639|gb|ADT87553.1| peptidyl-prolyl cis-trans isomerase D [Vibrio furnissii NCTC 11218]
          Length = 619

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 125/627 (19%), Positives = 259/627 (41%), Gaps = 24/627 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S S  +    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGSN-NAAAKVGGTEIGRGEFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++  A         K +LD +++   LDQ  + +GL     ++  
Sbjct: 60  QNERNRMQSQLGDYFSNLLADPEYVASFRKSVLDRMINDLLLDQHAQALGLRVSDTQIRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF  +++ S L R G +   + ++  + L R  ++    G       
Sbjct: 120 MILDMPQFQ-TDGKFDQEIYQSALRRAGFSPDSFAEYMRRDLVRNQLLSALQGSEFTLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++       + R +  I L+        + S+  + Q++++  + Y  PE  ++SYI  
Sbjct: 179 EVEAQGELITQTRDIRTITLSPAEFAKSIELSDDEIEQYYKQNSERYTRPEQVKLSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
              + +  I IS+++ +  YE + +KY S E R V  ++    ++K A      L  G  
Sbjct: 239 SAEQLKNAITISDEQAKQYYESHMDKYSSAEQRQVSHILIQGDDEKAAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+ + +       SLG    + + D +   + F+L K GD + ++   FGY I 
Sbjct: 299 FATLAKEKSQDIGSAEEGGSLGWIEHDTM-DPAFESAAFALKKAGDVSGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            + ++K      + EV  DI ++++  +A +K  E    LE+       S+D+ ++    
Sbjct: 358 KLDDVKAPVAKPYAEVAADIKSELKDQQAIDKFYELQTELEKVAFESPDSLDDAAKAISA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             +    V     + +  +        + +     K+D L+    + +     + V+++E
Sbjct: 418 HIVSTDFVS----EQQLPKALNNADVLKAIQSPEVKEDGLN-SEAIEVAPEHVVVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           S P     L EV   V      +K  ++  + A+QLV   +K   +  +       +   
Sbjct: 473 SRPEMVLPLNEVKDQVVAQLSKLKGEQQALALASQLVDGLNKGDLSLLE---QHQLAFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
            N I+R            +++   G V   +    +  +  V      +KV P Q  ++ 
Sbjct: 530 LNMIDRSSPLAGTV--YAMAKPADGAVTYAQAKDFDGNIVVVELDKVEAKVNP-QYNEQI 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + L +M  +  L  V++ L+    + 
Sbjct: 587 GAQLARMGVQQDLAGVLSVLRQNADIK 613


>gi|24373364|ref|NP_717407.1| peptidyl-prolyl cis-trans isomerase D [Shewanella oneidensis MR-1]
 gi|24347627|gb|AAN54851.1|AE015624_4 peptidyl-prolyl cis-trans isomerase D [Shewanella oneidensis MR-1]
          Length = 621

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 124/637 (19%), Positives = 252/637 (39%), Gaps = 43/637 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S+  +AK  LV++ + F   G+S  L S S       V   K+  +    ++
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSTS-EVPAAEVNGDKITKAELEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A       + + +L+ LV+   +DQ    +GL     ++  
Sbjct: 60  QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF ++ + + L + G   + +       ++R  +    VG       
Sbjct: 120 AIKSEPAFQ-TDGKFDNERYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              Q      + R + Y+V+++    A A  ++  +  +++  +  + +PE   + Y+  
Sbjct: 179 EAKQLAELQGQTRDIRYLVVDSAPFLAKASVTDEQVKSYYDANQGQFMSPEKVSLEYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290
           +  +  K  +++++E Q  Y+++K +Y S E R    ++          + +A++  + L
Sbjct: 239 NAADFAKDSKVTDEEAQTYYDEHKAQYVSNEKRLAAHILIALGSDEAAAKAKAEDLAKQL 298

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F  LA+   +          L  F    + D +   ++F+L +KG  + V+   F
Sbjct: 299 DNGADFAALAKANSEDTLSAEQGGKLDWFEPG-VMDPTFDTALFAL-QKGQHSGVVKTDF 356

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ I  + +I+P  TV F +VK  I  Q++  KA ++      +L +        D ++ 
Sbjct: 357 GFHIIKLLDIQPGTTVPFADVKTKIFAQLQEKKAVDQFYSLQSKLADTSYEVP--DTLAE 414

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
             K+V +++       +D    +V A   K  ++   F             + L     +
Sbjct: 415 TAKVVGVEIKTTPLFSRD----DVPAALNKPDVVKAAFSDPVMRQGLNSEVIELEPNHVV 470

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            +++KE   A    L EV  D+ +  K  +  E   +KA +L+ +               
Sbjct: 471 VIRMKEHHDAGTMPLAEVKADIAERLKQEQANEAARAKAEELMAQVK---------AGAA 521

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVF-KVTNS 579
             SL    ++ R     +      + + F  P      +V    + NG + V   KV  +
Sbjct: 522 DVSLTAKTKLGRG---AQDVDAAIVGKAFQMPTPSAAPVVGTVGLANGYAVVALDKVNAA 578

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
                +  +     L    ++     +I  LK+   V
Sbjct: 579 DSVSDELVNALKQRLNAQYSEADYRGLIESLKANAKV 615


>gi|148977892|ref|ZP_01814445.1| peptidyl-prolyl cis-trans isomerse D [Vibrionales bacterium SWAT-3]
 gi|145962838|gb|EDK28110.1| peptidyl-prolyl cis-trans isomerse D [Vibrionales bacterium SWAT-3]
          Length = 621

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 119/632 (18%), Positives = 247/632 (39%), Gaps = 34/632 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   + +  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYI-TGGGNNAAAKVGNTEIGRGEFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G       ++ A      K +LD +++   L+Q  E +GL     ++  
Sbjct: 60  QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F     +F  +V+ + L R G + + + ++  + L R  +V    G       
Sbjct: 120 MILEMPQFQTA-GQFDQEVYQAALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   +   + R +  + L+   +    + ++  + Q++ +    Y  PE  ++SYI  
Sbjct: 179 EIDTQSKLIAQTRDIRTVTLSVADLAKDVELTDEQIEQYYTENPLAYTRPEQAKVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++E+S++E Q  Y+++ +KY + E R V  ++    ++ +A      L  G  
Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTAEQRKVSHILVEGDDEAKAQSILDELNAGTD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LAEE+            LG   ++ + D +  D+ F+L   GD T ++   FGY I 
Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERD-VMDPAFEDAAFALQNVGDTTGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K   +  + EV  +I  ++    A ++  E    LE+       S+D+ +     
Sbjct: 358 KLDELKAPESQPYAEVAAEIKQELLDQHAVDQFYEMQTELEKVAFEFPDSLDDSAEAINA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                  +  A       EV   P   Q +     K+D L+    + +     + V+++E
Sbjct: 418 KITTTDFISQA----DAPEVLMTPAVMQAILSPEVKEDGLN-SELIEVAPEHVIVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           +       LEEV   V      VK  E+       LV +  K G     +  +       
Sbjct: 473 TRDETVLPLEEVKDQVVAALSAVKAEEQAVELGVSLVNDL-KAGN--EAVLADNNLEFTE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI----ENGLSYVVFKVTNSKVG-PVQ 585
              I+R             + VF+               +   + VV +++         
Sbjct: 530 LETIDRNS--------PLAASVFALAKPEEGQVVFGQSKDQAGNIVVVELSKVTAEINPA 581

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
              +  + L ++ N+  L +V+  L+    V 
Sbjct: 582 YSTQIGAQLERVGNQQDLTNVLNVLRKNADVE 613


>gi|114327489|ref|YP_744646.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315663|gb|ABI61723.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 656

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 140/645 (21%), Positives = 267/645 (41%), Gaps = 22/645 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML   R +   W  ++   +L + F+ WG SD     +G   +V+V   ++   +F  ++
Sbjct: 14  MLATFRNSLNAWPVRLLFGLLVLAFVGWGFSDVWTQATGGGALVTVNGSRIEPQAFQATY 73

Query: 61  KQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           ++EL  + Q++G          R + + ++ L  +V+   LD     +GL      +   
Sbjct: 74  QRELNRVRQQMGGGRQDVPPDIRKM-VAQQALQQMVTETVLDDLTRKMGLTTPDADIRQA 132

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
               P F     +F    F + L   G+ E  Y+ +  + ++   ++     G     +L
Sbjct: 133 TYAMPAFKNDQGQFDQARFQAVLNSVGLTEDSYVAYLRRTITERQLLDAIRAGASAPKIL 192

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           +     +  E RS D I +     PA   P++  L +++  +   Y APEY+RI  I+  
Sbjct: 193 VAPLFAWQKEQRSGDMIEVPVSAAPAPPQPTDKQLERYWANHPARYTAPEYRRIKAIVLT 252

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                K IE+   +L+A Y+ N   + +PE R V  ++ P++ +A    +    G  + +
Sbjct: 253 PETVAKAIEVPEKDLRAWYDANGIHFDTPEKRDVSIVLVPDEAKAKALAEQWDNGADWKK 312

Query: 299 LAEEQGKSLSD-ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++          + L   +K+ +P   L    F   K       +H S G+ +  V  I+
Sbjct: 313 ISALANSDGGSAVELTGITKQQLPVPDLMPLAFETTKTDQIAGPVHDSLGWHVVRVGKIQ 372

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           P+   SF+E+K++I   +   +A E++ +    L+E  A G+++D+       V+     
Sbjct: 373 PATHRSFEEMKEEIKQILSTQRAMEQIYDRSSHLDEAFAQGSTLDDKLPDADAVAAISGQ 432

Query: 418 VDFAGKDVKGKEVAAIPYKEQ----LLFRVFGK---DDPLSKDHTVALPDG------SYM 464
           +D  G   +G   A IP  +Q    L+   F     D P     T     G      +Y 
Sbjct: 433 LDMQGNTREGTP-APIPGSDQLKQALITAAFSMKKGDAPHLVPVTPQSQPGTPAGPTTYF 491

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            VQ+++ IP   R   EV  +V  DW   K        A + +L   +EGK+  D     
Sbjct: 492 AVQVEDIIPGALRPFPEVKAEVTADWIQDKRHHSQEEAATRAMLAL-QEGKSVADAVTLS 550

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK--VTNSKVG 582
           G +L     + R   E      D    +F+  +         +G + +     ++ ++  
Sbjct: 551 GGTLKQIPLLTR-KGETGDVSADTRRALFALKLNDSTMVNTPDGFAIIRLTRILSPTEKD 609

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
                 +    +TQ + +DL ++ +A L+S+    V++ L+QR +
Sbjct: 610 DPAAFSQAREQITQGLAEDLENTFLASLRSKADARVNNALLQRIM 654


>gi|258625370|ref|ZP_05720267.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM603]
 gi|258582361|gb|EEW07213.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM603]
          Length = 619

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 125/627 (19%), Positives = 261/627 (41%), Gaps = 24/627 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++  A         K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +  KF  +++ + L R G     + ++  K L R  ++    G       
Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + +I I ++  Q  Y+++ +KY S E R V  ++    ++++A      L  G  
Sbjct: 239 SADALKAEISIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  +A+E+    G +    SLG   ++ + D +   + ++L +KG  + ++   FGY I 
Sbjct: 299 FTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410
            + ++K      + EV + I  ++   +A +        LE+       S+DE +   K 
Sbjct: 358 RLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAFEHSDSLDEAA---KA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           +S  +   DF   D +  ++ A+P   Q L     K+D L+    + +     + V+++E
Sbjct: 415 ISAKVEHTDFISAD-QAPDLLAVPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           S P     L+EV T V +    +K  ++     N++V    K G +  D+    G +   
Sbjct: 473 SRPETVLPLQEVKTQVVEQLSQLKGEQQALELGNKIVTAL-KAGNS--DVLAENGVAFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
              I+R              Q   G     +    +  +  +      SKV P    ++ 
Sbjct: 530 VQMIDRSSPLANTVYSMVKPQ--DGAKGYAQAKDFDGNVVVIELDKVESKVTPA-YHEQI 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + L+++ ++  L  VI+ L+    + 
Sbjct: 587 ATQLSRIGSQQDLAGVISVLRQSTDIE 613


>gi|156935006|ref|YP_001438922.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156533260|gb|ABU78086.1| hypothetical protein ESA_02857 [Cronobacter sakazakii ATCC BAA-894]
          Length = 625

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 124/634 (19%), Positives = 257/634 (40%), Gaps = 28/634 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+S+ L     S+    V  Q++  +   N+ 
Sbjct: 1   MMDNLRAAANHVVLKIILGLIILSFVLTGVSNYLIG-GNSNYAAKVNDQEISRAQLENAV 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + +++G   +   S       L ++ L  L+  A +DQ+   + L     +V  
Sbjct: 60  NIERNNLERRLGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLNISDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   D KF +  + + +   G++  +Y       L+   +V   +G       
Sbjct: 120 SIFKNPAFQS-DGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVMGSDFILPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             DQ    + + R V    +    +      S   +  +++++ +N+++PE  R+SYI  
Sbjct: 179 ESDQFAALFAQQRQVRTATIAVDALAQKQQVSEQEIKDYYQQHTNNFQSPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D     +    S DE+QA Y+K+++++  P+      +    + EA      LK+G  F 
Sbjct: 239 DAAALAENA--SEDEIQAYYDKHQDEFGQPQRNRYSLIQTKTEDEAKAILAQLKQGADFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G       PD    ++   L +KG  + VI  S G++I  +
Sbjct: 297 TLAKEKSVDVITARNGGDMGWLEPGTTPD-EFKNA--GLKEKGQLSDVIKSSVGFLIVRL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I P+      EV  DI+ +++  KA +      +++ +  A     + ++  EK   +
Sbjct: 354 DDITPATVKPLSEVHNDISAKVKQEKALDAFFALQRKVSD--AANNDNESLASAEKAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  +D   +E+   P  + +    + G++     +  +   DG     ++I + 
Sbjct: 412 KAVETGWFSRDAVPEEINFKPVADAVFGGNLLGENGTPGSNSDIITVDGDRAFVLRITDH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P  ++ L EV   V    K  K  +  + +A  L+    K GK    + K  G +    
Sbjct: 472 KPQAEKPLAEVKDQVTALVKHQKALKAANEEAQNLLSAL-KAGKGDEAL-KAAGIAFSPV 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587
               R   +        +      P +    + I N +  + V+  +   + G  P  +K
Sbjct: 530 KTFERTTQDTLTQPVFALP----LPAKDKPSYGIGNDMQGNVVLLALDEVRSGTMPDAQK 585

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
                 LTQ   +   D+++  L+    + + D 
Sbjct: 586 KAMAQRLTQNNAEIAFDALLKGLRKDAKIKLGDA 619


>gi|319898755|ref|YP_004158848.1| peptidyl-prolyl cis-trans isomerase D [Bartonella clarridgeiae 73]
 gi|319402719|emb|CBI76266.1| peptidyl-prolyl cis-trans isomerase D [Bartonella clarridgeiae 73]
          Length = 621

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 156/625 (24%), Positives = 302/625 (48%), Gaps = 16/625 (2%)

Query: 10  RTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
            +W AKIFL  L + F++ WG+             ++ G+  +   ++  +   +   ++
Sbjct: 2   NSWFAKIFLTALLLCFILLWGIPQ--LHTMNEKDFLTSGKSTITIDTYRLALADQSLRLA 59

Query: 69  --QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
               +G +   +  +   +   +L+ L      D+    + +      +   I    +F 
Sbjct: 60  ITSHLGRMFTPDEIQRYKIPIFVLNQLQQDVLFDEQARKMKINLSKEAIARIIGNDNIFQ 119

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
             D  F+ D+F++ L +   NE  + ++YTK   R  ++   + GM+  ++       + 
Sbjct: 120 R-DRVFNRDLFLNYLQQLRTNESNFFNYYTKKEKRNQLILASLSGMKAPDIFYKALATYQ 178

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            E R  DY+V++ +    IADP+  +L +WF+ +K+ +RAPEY+ +S       +  K  
Sbjct: 179 EEKRIADYLVIDLKKEEKIADPNQEILEKWFDTHKEKFRAPEYRTVSLFSMTSEKFLKPQ 238

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           +IS +E+Q  Y +N  ++ +PE RT+E+L F  +K AD A + + +G  F  L +E+ K+
Sbjct: 239 DISVNEIQTYYTQNASRFITPEKRTIEKLRFSTRKAADNAAKKIAEGLSFDALVKEEKKT 298

Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
           LSDI+ G  ++  +P   LA  IF L KKG  + VI+   G VI  V++I PS  +  ++
Sbjct: 299 LSDITKGPLAENELP-SHLASEIFEL-KKGQISAVINDLQGPVIIRVTHITPSTQIPLEK 356

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
           V+KDI   +    A   ++  Y  +E     G S+ E++++ ++    +  +D  GK  +
Sbjct: 357 VEKDIRQILAQNNAITYIRNKYTEIENARFEGASLTELAKQHRLSLRKI-TIDKTGKTTE 415

Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
           G  +  +P K+ LL  ++   + + KD  ++LP+G Y+W Q+   IPAR R L EV  +V
Sbjct: 416 GITLTDLPQKDVLLNAIYQSREDIDKD-PLSLPEGGYLWYQVDMIIPARYRTLSEVKQNV 474

Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
              WK  +    +  KA  ++ + +K GK+   +   LG +  TT  + R D+ +K  G 
Sbjct: 475 IAQWKEEEIQRLLDEKAQGVLKQLAK-GKSLDSLATELGTTKQTTPALRRQDS-SKILGI 532

Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQMMNKDL 602
           +G+  +F G  +        +  + +V+K+T S +              + +  M+ +DL
Sbjct: 533 EGVKALFYGAKDHYGIVKGVDAKNRIVYKITASIIPKDITAHTLLPDIRTNIDMMIREDL 592

Query: 603 LDSVIAYLKSQYSVTVHDNLIQRYL 627
              ++     ++ + +++    + L
Sbjct: 593 KLEMLQAANKEHPIEINNLNYSQIL 617


>gi|293392541|ref|ZP_06636861.1| peptidyl-prolyl cis-trans isomerase D [Serratia odorifera DSM 4582]
 gi|291424943|gb|EFE98152.1| peptidyl-prolyl cis-trans isomerase D [Serratia odorifera DSM 4582]
          Length = 627

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 119/637 (18%), Positives = 257/637 (40%), Gaps = 24/637 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+ + L   SG      V  Q +  +    ++
Sbjct: 1   MMDNLRAAANNVVLKIILALIILSFVLTGVGNYLIGGSG-DYAAKVNGQVIERAQLEQAF 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G   ++          L ++ L  L+    LDQ+ + +GL     +V  
Sbjct: 60  QSERSRMQQQLGEQFSALAGNEGYMQQLRQQALSQLIDNMLLDQYAKKLGLSISDDQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   + +F +  ++  + R G +   Y     + L    V+  F         
Sbjct: 120 AIRKAPYFQ-TNGQFDNAKYLDLITRMGYSADNYAQSMRQQLLNQQVIQAFGNSGFVLPS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D       + R V    ++   + A  + S+  L +++ + K+++ APE   +SYI  
Sbjct: 179 ESDAMAALVLQERDVRLATIDLNALQAKQNVSDDELKEYYNQNKNSFIAPEQVEVSYIPM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + KI +++ ++ A Y+++K  Y  PE +    +    + EA      L KG  F 
Sbjct: 239 DAAAMQSKITVNDADISAYYDQHKSSYGQPERKNYSVIQLKTEAEAKAVLDELNKGADFA 298

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            LA+E+   +     G       PD +  +     L++KG  + V+  S GY+I  ++++
Sbjct: 299 TLAKEKSTDIISKRNGGELGWLEPDTTADELKEAKLSEKGQLSGVVKSSVGYLIVRLNDV 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P       EV+  IA++++  KA +      +++ E  A     + ++  E+   +   
Sbjct: 359 EPEKLKPLSEVRDSIADKVKQEKAVDAYYALQQKVSE--AATNDNESLASAEEAAGVKAA 416

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
              +  +D    E+   P  + +    + G++     +  V   +G     +++    P 
Sbjct: 417 KTAWFTRDNVPAELNFKPVVQAIFDGSLIGENGSPGSNSDVINVEGDRAFVIRVSGHKPE 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
                ++V   V +  K  K  ++   +  +L++E  K+GK    + K  G S     ++
Sbjct: 477 GVEPFDKVKDHVAELVKRNKAVQQAKLQGEKLLVEL-KQGKGDEAL-KAAGLSFGAVQKM 534

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVK------CFPIENGLSYVVFKVTNSKVGPVQEKD 588
            R   +++         VF+ P               ++ +  +  +       P  E  
Sbjct: 535 ARAPEDSQL-----TESVFALPHPQQGKPVYGMSQDRQDNVVLIALEAVKPGTLPADEMK 589

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            F   + +       DS++A L+ +  + +     Q+
Sbjct: 590 TFAGKMQESAIGVTFDSLLANLRKEAKIKMG-AAEQQ 625


>gi|304391667|ref|ZP_07373609.1| peptidyl-prolyl cis-trans isomerse D [Ahrensia sp. R2A130]
 gi|303295896|gb|EFL90254.1| peptidyl-prolyl cis-trans isomerse D [Ahrensia sp. R2A130]
          Length = 632

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 160/634 (25%), Positives = 296/634 (46%), Gaps = 13/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  +R     W AKI L++L   F +WG++ ++ S   +++V +VG  KVP   F++++
Sbjct: 1   MLGALRGFVTGWTAKILLILLVASFALWGITGSILSGGDTTSVAAVGETKVPVREFLSAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            + +  + Q+ G  +  + AR  G++++ L N+V+ ATLD+F    GL     ++   IA
Sbjct: 61  NRNMNEVQQRAGRRLTRDEARIFGVEQRALGNVVAWATLDEFARVHGLALSDKQLAQMIA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P FH     ++ + F   + +  + E ++I+       R+ +   F  G    +    
Sbjct: 121 ENPAFHDSTGSYNRETFRQAVFQAQMRESDFIEAQNASAVRSQLTRSFADGPILPDTFKA 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E R  +Y+ +        A P+   L  +FE  K NY APEY+++  +     
Sbjct: 181 ALANYAQEQRVFEYLTITPAIAGEPAAPTAEQLKTYFEANKANYAAPEYRKLDLLSLRPE 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +    +E+S++E++A+Y+    +Y  PE R V+Q+VFP+++ A+ A +SL++G  F  + 
Sbjct: 241 DLAASMEVSDEEIEADYQARISRYQEPERRRVQQIVFPSREAAEAAKKSLEEGAFFETVV 300

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E  ++++D  LG  +K+ +P   L D  F L +    + VI G FG VI  V+ +  + 
Sbjct: 301 AEADRTMADADLGLMAKDALP-AHLQDPAFGL-EVNAISDVIDGPFGSVIVRVTEVNEAR 358

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T    EVK  I N M + +A+ ++    + +E+  A G+S+ E + +  +    +  VD 
Sbjct: 359 TTPLDEVKDTIKNAMALERAASRITSLSEEIEDSRAGGSSLAEAAPKFDLKIRSVE-VDA 417

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
            G+   G ++  IP    LL + F  +        + +    ++W  + E   ARDR  +
Sbjct: 418 RGRTPDGTQLTDIPQSSDLLRQAFETEVGAQA-SALDIGAAGFVWYDVTEIAAARDRTQD 476

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL----TTNQINR 536
           EV   +  DW   +  + V  KA  L       G + R++   +  S L    TT  +NR
Sbjct: 477 EVTERLTTDWMAAERGKMVQQKAEALKARLD-GGASMRELSAEVDPSTLGAAPTTQPLNR 535

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISY 593
                + F      + F G    +         + ++ KV   ++         D+ ++ 
Sbjct: 536 TGT-AQGFPSAATQEGFKGAEGHIAIVDGSEAGTSILLKVKEVRLPEAAAAPNVDQQVNI 594

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
             +    DLL+ +IA L+ +Y VT +   I   L
Sbjct: 595 ANEGAADDLLNQMIARLQGEYGVTQNPQTIDMAL 628


>gi|332141940|ref|YP_004427678.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551962|gb|AEA98680.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 630

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 115/641 (17%), Positives = 252/641 (39%), Gaps = 30/641 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+   A   + ++ + F+  G+   L S +G++ V +V  +++       ++
Sbjct: 1   MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYLTS-NGTTAVATVNGEEISAQELERAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + +   +  + G  +    S         K +LD L++   + Q   ++GL     ++  
Sbjct: 60  QNQRAQMESQYGESIAQLFSSEQYLADFRKNVLDRLIAEKLIQQQATNMGLRVSDEQIRE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I + P F     +F ++ F + L + G    ++ D+    +++  +           + 
Sbjct: 120 TIVQMPEFQF-GGQFDNERFQAILRQNGFQVADFRDYLRTQMTQNQLAAALTNSSFALDG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++QA     + R+  Y+++++       + ++A +  ++     ++   E  +++Y+  
Sbjct: 179 EVEQANALQRQTRNAKYVLVSSDEFADSIEVTDADIEAFYNNNIASFDTEEQVKLAYVKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290
            V + + ++ +  D ++  Y+ N   Y + E R V  ++          + +A+     +
Sbjct: 239 SVEDLKGRVSVDEDAVRTYYDNNLGSYGTEEQRRVSHILIEAGDDADAAKAKAESLKAEI 298

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             G  F  LAE           G    F    + D +  ++ FSL   GD + V+   FG
Sbjct: 299 DSGADFAALAEANSDDTFSAENGGDLDFITPEMMDPAFDEAAFSLENVGDVSDVVETEFG 358

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406
           Y +  ++ +K +   +F EV  +I + +    A EK  E    L E       ++D+ + 
Sbjct: 359 YHVIKLTEVKEAQVKTFDEVAGEIRDTLLYDAAMEKYFELQNTLAEIAFEVPDTLDDAAN 418

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
              +    +       ++    E+++ P    + F     ++ L+ D  + L D + +  
Sbjct: 419 AVDLP---IQESVLFSRNTAPAELSS-PGLLDVAFSSELVEEGLNSD-IIELDDETVVVA 473

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++ E  P R + L+EV   ++   K  K+ E   S A   V +  + G++  D       
Sbjct: 474 RVVEHQPQRTQSLDEVREGIEASVKAEKSKEAAESWAFD-VAQKVRAGESVEDELAAKSV 532

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVF--KVTNSKV 581
              T   + R            +  +FS  +E    V      NG   VV    V  +  
Sbjct: 533 EWETAANVQRA---GGTLARALVDTLFSLALEGDDQVDVATTVNGDVAVVMLEGVNPAPA 589

Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
              +        L Q+  + +    I  L++   VT+ + L
Sbjct: 590 LESELGKSLKQRLAQVQGQRVYQQYIDALRANAEVTISEAL 630


>gi|262166048|ref|ZP_06033785.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus VM223]
 gi|262025764|gb|EEY44432.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus VM223]
          Length = 619

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 123/627 (19%), Positives = 259/627 (41%), Gaps = 24/627 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++  A         K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +  KF  +++ + L R G     + ++  K L R  ++    G       
Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + +I I ++  Q  Y ++ +KY S E R V  ++    ++++A      L  G  
Sbjct: 239 SADALKAEIAIDDEAAQQYYHEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  +A+E+    G +    SLG   ++ + D +   + ++L +KG  + ++   FGY I 
Sbjct: 299 FTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410
            + ++K      + EV + I  ++   +A +        LE+       S+DE +   K 
Sbjct: 358 RLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAFEHSDSLDEAA---KA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           +S  +   DF   + +  ++ A+P   Q L     K+D L+    + +     + V+++E
Sbjct: 415 ISAKVEHTDFISAE-QAPDLLAVPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           S P     L+EV   V +    +K  ++     N++V    K G +  D+    G +   
Sbjct: 473 SRPETVLPLQEVKNQVVEQLSQLKGEQQALELGNKIVAAL-KAGNS--DVLAENGVAFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
              I+R              Q   G     +    +  +  +      SKV P    ++ 
Sbjct: 530 LQMIDRSSPLANTVYSMVKPQ--DGAKGYAQAKDFDGNVVVIELDKVESKVTPA-YHEQI 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + L+++ ++  L  VI+ L+    + 
Sbjct: 587 ATQLSRIGSQQDLAGVISVLRQSADIE 613


>gi|117921098|ref|YP_870290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
 gi|117613430|gb|ABK48884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
          Length = 621

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 123/637 (19%), Positives = 255/637 (40%), Gaps = 43/637 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S+  +AK  LV++ + F   G+S  L S S       V   K+  +    ++
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSKS-DVPAAEVNGDKITKAELEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A       + + +L+ LV+   +DQ    +GL     ++  
Sbjct: 60  QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +D + + L + G   + +       ++R  +    VG       
Sbjct: 120 AIKSEPAFQ-TDGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              Q      + R + Y+V+++    A A  ++  +  +++  +  + +PE   + Y+  
Sbjct: 179 EAKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
           +  +  K  +++++E QA Y+++K +Y S E R    ++          + +A++  + L
Sbjct: 239 NAADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAAAKAKAEDLAKQL 298

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F +LA+   +          L  F    + D S   ++F+L +KG  + V+   F
Sbjct: 299 DNGADFAELAKANSEDTLSAEQGGKLDWFEPG-VMDPSFDTALFAL-QKGQHSAVVKTDF 356

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ I  + +++P  TV F +VK  I  Q++  KA ++      +L +        D ++ 
Sbjct: 357 GFHIIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQFYSLQSKLADTSYEVP--DTLAE 414

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
             K+V +++       +D    +V     K  ++   F             + L     +
Sbjct: 415 TAKVVGVEIKATPMFSRD----DVPTALNKPDVVKAAFSDTVLRQGLNSEVIELEPNHVV 470

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            +++KE   A    L EV  D+ +  K  +  E   +KA +L+ +               
Sbjct: 471 VIRMKEHHDAGTMPLAEVKADIAERLKQDQANEAARAKAQELMTQVK------------A 518

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVF-KVTNS 579
           GA+ ++     ++    +      + + F  P       V    + NG + +   KV  +
Sbjct: 519 GATDVSLTAKTKLGRGAQDVDAAIVGKAFQMPTPTATPVVDTVGLANGYAVIALDKVNAA 578

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           +    +  +     L    ++     +I  LK+   V
Sbjct: 579 ESVSDELVNALKQRLNAQYSEADYRGLIESLKANAKV 615


>gi|84387739|ref|ZP_00990755.1| peptidyl-prolyl cis-trans isomerse D [Vibrio splendidus 12B01]
 gi|84377422|gb|EAP94289.1| peptidyl-prolyl cis-trans isomerse D [Vibrio splendidus 12B01]
          Length = 621

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 117/632 (18%), Positives = 245/632 (38%), Gaps = 34/632 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   + +  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYI-TGGGNNAAAKVGNTEIARGEFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G       ++ A      K +LD +++   L+Q  E +GL     ++  
Sbjct: 60  QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F     +F  +V+ S L R G + + + ++  + L R  +V    G       
Sbjct: 120 MILEMPQFQTA-GQFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   +   + R +  + L+   +    + ++  + Q++ +    Y  PE  ++SYI  
Sbjct: 179 EIDTQSKLIAQTRDIRTVTLSVADLAKGIELTDEQIEQYYSENPQAYTRPEQAKVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++E+S++E Q  Y+++ +KY + E R V  ++    ++ +A      L  G  
Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LAEE+            LG   ++ + D +  D+ F+L   GD T ++   FGY I 
Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERD-VMDPAFEDAAFALENIGDTTGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K S    + EV  +I  ++    A ++  E    LE+       S+D+ +     
Sbjct: 358 KLDEVKASQAQPYTEVAAEIKQELLDQHAVDQFYEQQTELEKVAFEFPDSLDDSAEAINA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                  +      V   EV   P   Q +     K+D L+    + +     + V+++E
Sbjct: 418 KITTTDFISQ----VDAPEVLMTPAVMQAILSPEVKEDGLN-SEVIEVAPEHVIVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           +       L EV   V      V+  ++       LV E  +       +  +       
Sbjct: 473 TRDETVLPLAEVKDQVVAALSAVQAEQQAVELGVSLVNELKQGN---EAVLADNNLEFTE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI----ENGLSYVVFKVTNSKVG-PVQ 585
              I+R             + VF+               +   + VV +++         
Sbjct: 530 LETIDRNS--------PLAASVFALAKPEAGQAVFGQSKDQDGNIVVVELSKVTAEINPA 581

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
              +  + L ++ N+  L +V+  L+    V 
Sbjct: 582 YSTQIGAQLERVGNQQDLTNVLNVLRKNADVE 613


>gi|300114008|ref|YP_003760583.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           watsonii C-113]
 gi|299539945|gb|ADJ28262.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           watsonii C-113]
          Length = 640

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 107/647 (16%), Positives = 246/647 (38%), Gaps = 41/647 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++   A + + ++ +PF +WG+++ +    G +   SV  +++    F  ++
Sbjct: 1   MLQAIRSRAQGIFAWVIVGLIAIPFTLWGINNYMLD-GGEAVAASVNGEEISTREFQLAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +     +   +G     E        + +++ LV    +     ++GL      +   I 
Sbjct: 60  QNYTQQLRFLMGASFPEEMLDDPATKQNVIEGLVEQRLVLDAAAELGLGMSDSALSQVIR 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +  F G+  +F    + + L+ +G+    Y       L    +          +   +D
Sbjct: 120 SNEAFQGESGQFDSQRYEAVLSSQGLTPVAYEARLRSALLSEQLASSLRLSAFATQQEVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R V Y ++ + +       S   + Q+++ + + +R PE  ++ Y+     
Sbjct: 180 TIARLRHQKREVAYSIVPSANFHDAIQVSADKVRQYYDDHPEEFRIPEQVKVHYLRLTAA 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288
                I +    L+  YE++K++Y  PE R    ++               Q++A+   +
Sbjct: 240 SLATDIPLDEQTLRNFYEESKDQYRVPERRRASHILITIPPQGDEAVRQQAQEKAEAVLE 299

Query: 289 SLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            L++G+ F ++A+E     G +     LG F +  + D +   ++FSL + G  +  I  
Sbjct: 300 RLQQGEAFEEVAKEVSEDPGSAKKGGDLGFFGRG-VMDPAFEKAVFSLEETGVLSEPILS 358

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDE 403
            FGY I  ++ I+P     F+ V++++A + R   A E+  E  + L+        +++ 
Sbjct: 359 KFGYHIIKLTGIEPGEVKPFEAVREELAQKYRQQIAEEQFYEQAEILDNLTYENPFTLEV 418

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDG 461
            +    +           G          I    +++   F ++         T+ L   
Sbjct: 419 AAESLGLSVETSEPFSQNGGS-------GIAANTKVVAAAFSEEVLREEMNSQTIELAPN 471

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
             + V++ + +PA  +  EEV   +++     +   +   +   LV +  +       + 
Sbjct: 472 DLVVVRLDKHLPADTKPFEEVREQIQEKLTLEQAKAQAQKRGEALVADLQQGESPETVLK 531

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV--------V 573
           +             R   +++    + I   +  P       P   G +          V
Sbjct: 532 EEKEIVWNEKKWYAR---DDQDIPAEIIKLAYELPHPPSSKEPAFAGQALASGDYAVVGV 588

Query: 574 FKVTNSKVGPVQEKDK--FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +KV N     ++EK +   +  + Q+  + +    I  LKS+  + +
Sbjct: 589 YKVQNGDPSKLEEKARRSLVQEMEQVHGEMVYRDFIQELKSKADIKI 635


>gi|258621306|ref|ZP_05716340.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM573]
 gi|258586694|gb|EEW11409.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM573]
          Length = 619

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 123/627 (19%), Positives = 261/627 (41%), Gaps = 24/627 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++  A         K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +  KF  +++ + L R G     + ++  K L R  ++    G       
Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  + L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTLTLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + +I I ++  Q  Y+++ +KY S E R V  ++    ++++A      L  G  
Sbjct: 239 SADALKAEIAIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  +A+E+    G +    SLG   ++ + D +   + ++L +KG  + ++   FGY I 
Sbjct: 299 FTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410
            + ++K      + EV + I  ++   +A +        LE+       S+DE +   K 
Sbjct: 358 RLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAFEHSDSLDEAA---KA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           +S  +   DF   + +  ++ A+P   Q L     K+D L+    + +     + V+++E
Sbjct: 415 ISAKVEHTDFISAE-QAPDLLAVPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           S P     L+EV T V +    +K  ++     N++V    K G +  D+    G +   
Sbjct: 473 SRPETVLPLQEVKTQVVEQLSQLKGEQQALELGNKIVTAL-KAGNS--DVLAENGVAFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
              I+R              Q   G     +    +  +  +      SKV P    ++ 
Sbjct: 530 VQMIDRSSPLANTVYSMVKPQ--DGAKGYAQAKDFDGNVVVIELDKVESKVTPA-YHEQI 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + L+++ ++  L  VI+ L+    + 
Sbjct: 587 ATQLSRIGSQQDLAGVISVLRQSTDIE 613


>gi|59711407|ref|YP_204183.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Vibrio fischeri
           ES114]
 gi|59479508|gb|AAW85295.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Vibrio fischeri
           ES114]
          Length = 618

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 119/637 (18%), Positives = 246/637 (38%), Gaps = 31/637 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ IR+ S     KI L ++   F+  G+   L    G      VG +++  + F   +
Sbjct: 1   MMDRIREGSTGLAVKIILGLIIFSFVFAGVGSYLVG-GGQPLAAKVGEREITRNEFEQVY 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G    +   + A      K +LD +V+ A LD   +D+GL     ++  
Sbjct: 60  QNERNRMQSQLGEYFATLLGDPAYVEQFRKSVLDRMVNDALLDNQAQDLGLRISDDQIRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  KD KF  +++   L R G +   +  +  + L+R  +V          + 
Sbjct: 120 TILSMPQFQ-KDGKFDEEIYNISLRRAGFSSDSFAAYLRQDLARNQLVMALESTEFTLSN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +        + R +  I LN       A  ++  +T+++   K  +  PE  ++SY+  
Sbjct: 179 EVQAQAALETQQREIRTITLNTADFAKNAKVTDEEITEYYNANKQQFVRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-NQKEADEAFQSLKKGKKF 296
             +  + +  I++ E++  Y+ N +KY + E R V  ++   ++ +A +    +  G+ F
Sbjct: 239 SGNSLKAQAPITDKEIEEYYQANLDKYSTQEKREVSHILIKGDEADAQKVLDRINNGEDF 298

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A++  + +       SLG   +  I D    D+ F LAK GD + ++  +FG+ I  
Sbjct: 299 ATVAKDASQDIPTAKEGGSLGWIERGVI-DPEFEDAAFQLAKVGDHSGIVKSAFGFHIIQ 357

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIV 411
           ++ I+   T    EV  DI + +    A++        L E+      S+D+ +      
Sbjct: 358 LNGIEEPTTKPLAEVSADIKSFLVDEHAADAFYSLQTELAEKAFESPDSLDDAAEAVDAK 417

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
            +       A       +  A     Q ++    K+D L+ D  + +     + V++++ 
Sbjct: 418 IVTSDFFSQA----DAPKALADSAVLQAIYSPEVKEDGLNSD-VIEIAPEHVIVVRVEDV 472

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                  L+EV   V       +  +E    A  ++   +K       +  N G +    
Sbjct: 473 RDEMVLPLDEVKDAVIARLSQAQGEQEALELAQNVISGLNKG---DNSVMANNGLAFAEA 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI---ENGLSYVVFKVTNSKVGPVQEKD 588
             I+R D                 P +    +       G   +V   +  ++       
Sbjct: 530 RMISRNDELANDVYR------LEKPADGKSTYAQVMDRQGNHVIVALDSVLELNDSNMSS 583

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +  + L +   +  L + +  LK   S  +   L+++
Sbjct: 584 QIATGLLRSQTQQDLTATLDTLKE--STEISYPLLEQ 618


>gi|262171087|ref|ZP_06038765.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus MB-451]
 gi|261892163|gb|EEY38149.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus MB-451]
          Length = 619

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 125/627 (19%), Positives = 262/627 (41%), Gaps = 24/627 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++  A         K +LD +V+   L+Q    +GL    G+V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDGQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +  KF  +++ + L R G     + ++  K L R  ++    G       
Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 179 EVNLQDQLVSQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + +I I ++  Q  Y+++ +KY S E R V  ++    ++++A      L  G  
Sbjct: 239 SADALKAEIAIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  +A+E+    G +    SLG   ++ + D +   + ++L +KG  + ++   FGY I 
Sbjct: 299 FTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410
            + ++K      + EV + I  ++   +A +        LE+       S+DE +   K 
Sbjct: 358 RLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAFEHSDSLDEAA---KA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           +S  +   DF   + +  ++ A+P   Q L     K+D L+    + +     + V+++E
Sbjct: 415 ISAKVEHTDFISAE-QAPDLLAVPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           S P     L+EV T V +    +K  ++     N++V    K G +  D+    G +   
Sbjct: 473 SRPETVLPLQEVKTQVVELLSQLKGEQQALELGNKIVTAL-KAGNS--DVLAENGVAFGE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
              I+R              Q   G     +    +  +  +      SKV P    ++ 
Sbjct: 530 VQMIDRSSPLANTVYSMVKPQ--DGAKGYAQAKDFDGNVVVIELDKVESKVTPA-YHEQI 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + L+++ ++  L  VI+ L+    + 
Sbjct: 587 ATQLSRIGSQQDLAGVISVLRQSTDIE 613


>gi|114048051|ref|YP_738601.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
 gi|113889493|gb|ABI43544.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
          Length = 621

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 123/637 (19%), Positives = 255/637 (40%), Gaps = 43/637 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S+  +AK  LV++ + F   G+S  L S         V   K+  +    ++
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGS-QSDVPAAEVNGDKITKAELEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A       + + +L+ LV+   +DQ    +GL     ++  
Sbjct: 60  QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +D + + L + G   + +       ++R  +    VG       
Sbjct: 120 AIKSEPAFQ-TDGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              Q      + R + Y+V+++    A A  ++  +  +++  +  + +PE   + Y+  
Sbjct: 179 EAKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290
           +  +  K  +++++E QA Y+++K +Y S E R    ++          + +A++  + L
Sbjct: 239 NSADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAVAKAKAEDLAKQL 298

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F +LA+   +          L  F    + D S   ++F+L +KG  + V+   F
Sbjct: 299 DNGADFAELAKANSEDTLSAEQGGKLDWFEPG-VMDPSFDTALFAL-QKGQHSAVVKTDF 356

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ I  + +++P  TV F +VK  I  Q++  KA ++      +L +        D ++ 
Sbjct: 357 GFHIIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQFYSLQSKLADTSYEVP--DTLAE 414

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
             K+V +++       +D    +V A   K  ++   F             + L     +
Sbjct: 415 TAKVVGVEIKTTPLFSRD----DVPAALNKPDVVKAAFSDTVLRQGLNSEVLELEPNHVV 470

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            +++KE   A    L EV  D+    K  +  E   +KA +L+ +               
Sbjct: 471 VIRMKEHHDAGTMPLAEVKADISDRLKQDQANEAARAKAQELMTQVK------------A 518

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF-KVTNS 579
           GA+ +T     ++    +      + + F  P      +V    + NG + +   KV  +
Sbjct: 519 GAADVTLTAKAKLGRGAQDVDAAIVGKAFQMPTPSATPVVDTVGLANGYAVIALDKVNAA 578

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           +    +  +     L    ++     +I  LK+   +
Sbjct: 579 ESVSDELVNALKQRLNAQYSEADYRGLIESLKANAKI 615


>gi|54309794|ref|YP_130814.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
           profundum SS9]
 gi|46914232|emb|CAG21012.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
           profundum SS9]
          Length = 623

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 119/632 (18%), Positives = 244/632 (38%), Gaps = 26/632 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E +R+   +   K+ L ++   F+  G+   L   S       +   ++  + F  ++
Sbjct: 1   MMERLREGVNSIWVKVILGLIIFSFVFAGVGSYLAGGS-QPAAAKINGTEISQNDFEQAY 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++   +        + +LD +++   ++Q   ++GL      +  
Sbjct: 60  QNERNRMQSQLGDYFSTLLGDPEYVKQFRQSVLDRMINDVLIEQRATELGLRISDEHIRK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D +F +D +   L R G    ++ ++    + RT  +    G     + 
Sbjct: 120 TITSMPEFQR-DGQFDNDSYTMLLRRSGFTPDQFAEYMRTDMLRTQFLTAIQGSDFTLDS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L   ++   + R V  + L+       A  ++     ++E+    +  P+  +++YI  
Sbjct: 179 ELTALRKLEAQQRVVRSLTLDLADFTKNATVTDEEAKAFYEQNPQMFTRPDQVKVAYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----ADEAFQSLKK 292
                +  +++S+++++A YE++K+KY S E R V  ++           A+     L  
Sbjct: 239 SGEGLKDTLDVSDEDVKAYYEEHKDKYSSIEQRQVSHILVQGDNADAKAKAEALKAELDA 298

Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F +LA               L  F +  + D +  D+ F LA  GD + V+  SFGY
Sbjct: 299 GADFAELALSSSDDTYSGKDGGKLDWFERG-VMDPAFEDAAFGLANNGDISGVVKSSFGY 357

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRR 407
            I  +  +K S    F +V  +I  ++R  +A+E   +   +L E    +  S+D+ +  
Sbjct: 358 HIIKLDAVKASQVKPFADVSAEIIVELREQQAAEHFYDMQTKLAETAFEMPDSLDDAAAV 417

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
                     +      +  + V A P   Q LF    ++D L+ D  + +     + V+
Sbjct: 418 VNATVHTTDFISQ----IDAQGVLANPAVMQALFSAEVREDGLNSD-VIEIAPEHVVVVR 472

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + +S        +EV   VK    + K  +   +KA+ L+    + G    D  +  G S
Sbjct: 473 VDDSRDEMVLPFDEVSAKVKAQLASQKGEQNAQAKADDLIAGL-RAGNT--DALEAEGLS 529

Query: 528 LLTTNQINRM--DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
                 I+R   D       +     V    V  +      N     + KV +  V    
Sbjct: 530 FGEEQTISRSGPDRMVSQVAFSLTKPVGDKSVYGMTRDATGNVQIIALDKVIDVDVAKEA 589

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               F   + QM  +  + + +  L+    V+
Sbjct: 590 ISSDFAKQVEQMNAQQDVAATLQALRDTAEVS 621


>gi|197334554|ref|YP_002155561.1| peptidyl-prolyl cis-trans isomerase D [Vibrio fischeri MJ11]
 gi|197316044|gb|ACH65491.1| peptidyl-prolyl cis-trans isomerase D [Vibrio fischeri MJ11]
          Length = 618

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 118/637 (18%), Positives = 246/637 (38%), Gaps = 31/637 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ IR+ S     KI L ++   F+  G+   L    G      VG +++  + F   +
Sbjct: 1   MMDRIREGSTGLAVKIILGLIIFSFVFAGVGSYLVG-GGQPLAAKVGEREITRNEFEQVY 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G    +   + A      K +LD +V+ A LD   +D+GL     ++  
Sbjct: 60  QNERNRMQSQLGEYFATLLGDPAYVEQFRKSVLDRMVNDALLDNQAQDLGLRISDDQIRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  KD KF  +++   L R G +   +  +  + L+R  +V          + 
Sbjct: 120 TILSMPQFQ-KDGKFDEEIYNISLRRAGFSSDSFAAYLRQDLARNQLVMALESTEFTLSN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +        + R +  I LN       A  ++  +T+++   K  +  PE  ++SY+  
Sbjct: 179 EVQAQAALETQQREIRTITLNTADFAKNAKVTDEEITEYYNANKQQFVRPEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-NQKEADEAFQSLKKGKKF 296
             +  + +  I++ E++  Y+ N +KY + E R V  ++   ++ +A +    +  G+ F
Sbjct: 239 SGNSLKAQAPITDKEIEEYYQANLDKYSTQEKREVSHILIKGDEADAQKVLDRINNGEDF 298

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A++  + +       SLG   +  I D    D+ F LAK GD + ++  +FG+ I  
Sbjct: 299 ATVAKDASQDIPTAKEGGSLGWIERGVI-DPEFEDAAFQLAKVGDHSGIVKSAFGFHIIQ 357

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIV 411
           ++ I+   T    EV  DI + +    A++        L E+      S+D+ +      
Sbjct: 358 LNGIEEPTTKPLAEVSADIKSFLVDEHAADAFYSLQTELAEKAFESPDSLDDAAEAVDAK 417

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
            +       A       +  A     Q ++    K+D L+ D  + +     + V++++ 
Sbjct: 418 IVTSDFFSQA----DAPKALADSAVLQAIYSPEVKEDGLNSD-VIEIAPEHVIVVRVEDV 472

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                  L+EV   V       +  ++    A  ++   +        +  N G +    
Sbjct: 473 RDEMVLPLDEVKDAVIARLSQAQGEQKALELAQNVISGLNNG---DNSVMANNGLAFAEA 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI---ENGLSYVVFKVTNSKVGPVQEKD 588
             I+R D                 PV+    +       G   +V   +  ++       
Sbjct: 530 RMISRNDELANDVYR------LEKPVDGKSTYAQVMDRQGNHVIVALDSVLELNDSNMSS 583

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +  + L +   +  L + +  LK   S  +   L+++
Sbjct: 584 QIATGLLRSQTQQDLTATLDTLKE--STEISYPLLEQ 618


>gi|242240288|ref|YP_002988469.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Dickeya dadantii
           Ech703]
 gi|242132345|gb|ACS86647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech703]
          Length = 626

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 131/637 (20%), Positives = 257/637 (40%), Gaps = 30/637 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V K+ L ++   F++ G+ D L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRAAANNVVLKVILALIVGSFVLTGVGDYLIRGSG-DYAAKVNGQEISRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E     + +G   ++          L K+ L  L+    +DQF  ++GL     +V  
Sbjct: 60  QNERNRQQEMLGENFSALAANEGYMQQLRKQALSQLIDDTLIDQFARNLGLNISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   +N+F ++ +++++ + G+    Y     K L    +V    G       
Sbjct: 120 AIFSVPAFQ-TNNRFDNEKYLAQVQQLGLTPDVYAQLLRKQLVTQQLVRGLGGSNFQLPQ 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D       ++R++    ++          S+  +  ++ +    Y APE  ++SYI+ 
Sbjct: 179 EIDNLVAIAAQDRTIRTATIDLDARAKTQTASDDEIQNFYNQNSSRYLAPEQFKVSYIML 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      KI + +  + + YE++K ++  PE R    +   N+ +A    + L KG  F 
Sbjct: 239 DAAAIMDKISVDSAAVSSYYEQHKSEFTQPERRKYSIIQLKNEADAKAVLEQLHKGADFA 298

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   LG        D        +L +KG  + V+  S GY+I  +
Sbjct: 299 ALAKEKSTDIVSRRNGGDLGWMDGNSTVD---EIKQANLQQKGQLSDVVKSSVGYLIVRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+     S  EV+ D+ ++++  KA ++     ++L E  A     + +   EK   I
Sbjct: 356 DDIQVQRVRSLDEVRGDLGDKVKREKALDEFYAQQQKLSE--AASNDNESLVSAEKASGI 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR-VFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                D+  +D     +     K+ +L   + G++     +  V   DG   +V +I E 
Sbjct: 414 KARQTDWFTRDNIPAALDFPQVKQAILNGTLTGENGAPGSNSDVINVDGDRAFVLRISEH 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L++V   V +  K  K  ++    A +++ +  K+GKN  D     G S    
Sbjct: 474 KPEATQPLDKVRDQVVQAIKRQKAEQQARVDAEKILADL-KQGKN--DTLTAAGLSFSAP 530

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCF----PIENGLSYVVFKVTNSKV--GPVQ 585
             ++ +   +          VFS P             +   + V+  + N K       
Sbjct: 531 RVMSSVGRGDVMS-----EAVFSLPHPQKDKVSYGIAQDQVGNIVIVALDNVKARELEAA 585

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
           +K +F + + Q     L DS+IA L  +  + + D  
Sbjct: 586 QKKQFAAQIEQSALATLFDSLIANLHDEAKIKLGDAA 622


>gi|113970826|ref|YP_734619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
 gi|113885510|gb|ABI39562.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
          Length = 621

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 125/637 (19%), Positives = 257/637 (40%), Gaps = 43/637 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S+  +AK  LV++ + F   G+S  L S S       V   K+  +    ++
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSQS-DVPAAEVNGDKITKAELEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A       + + +L+ LV+   +DQ    +GL     ++  
Sbjct: 60  QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +D + + L + G   + +       ++R  +    VG       
Sbjct: 120 AIKSEPAFQ-TDGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              Q      + R + Y+V+++    A A  ++  +  +++  +  + +PE   + Y+  
Sbjct: 179 EAKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
           +  +  K  +++++E QA Y+++K +Y S E R    ++          + +A++  + L
Sbjct: 239 NSADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAAAKAKAEDLAKQL 298

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F +LA+   +          L  F    + D S   ++F+L KKG+ + V+   F
Sbjct: 299 DNGADFAELAKANSEDTLSAEQGGKLDWFEPG-VMDPSFDTALFAL-KKGEHSAVVKTDF 356

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ I  + +++P  TV F +VK  I  Q++  KA ++      +L +        D ++ 
Sbjct: 357 GFHIIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQFYSLQSKLADTSYEVP--DTLAE 414

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
             K+V +++       +D    +V A   K  ++   F             + L     +
Sbjct: 415 TAKVVGVEIKTTPLFSRD----DVPAALNKPDVVKAAFSDTVLRQGLNSEVLELEPNHVV 470

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            +++KE   A    L EV  D+    K  +  E   +KA +L+ +               
Sbjct: 471 VIRMKEHHDAGTMPLAEVKADISDRLKQDQANEAARAKAQELMTQVK------------A 518

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF-KVTNS 579
           GA+ +T     ++    +      + + F  P      +V    + NG + +   KV  +
Sbjct: 519 GAADVTLTAKAKLGRGAQDVDAAIVGKAFQMPTPSATPVVDTVGLANGYAVIALDKVNAA 578

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           +    +  +     L    ++     +I  LK+   +
Sbjct: 579 ESVSDELVNALKQRLNAQYSEADYRGLIESLKANAKI 615


>gi|218710170|ref|YP_002417791.1| peptidyl-prolyl cis-trans isomerase D [Vibrio splendidus LGP32]
 gi|218323189|emb|CAV19366.1| Peptidyl-prolyl cis-trans isomerase D [Vibrio splendidus LGP32]
          Length = 621

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 119/628 (18%), Positives = 247/628 (39%), Gaps = 26/628 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   + +  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYI-TGGGNNAAAKVGNTEIARGEFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G       ++ A      K +LD +++   L+Q  E +GL     ++  
Sbjct: 60  QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F     +F  +V+ S L R G + + + ++  + L R  +V    G       
Sbjct: 120 MILEMPQFQTA-GQFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   +   + R +  + L+   +    + ++  + Q++++    Y  PE  ++SYI  
Sbjct: 179 EIDIQSKLIAQTRDIRTVTLSVADLAKTIELTDEQIEQYYQENPAAYTRPEQAKVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++E+S++E Q  Y+++ +KY + E R V  ++    ++ +A      L  G  
Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LAEE+            LG   ++ + D +  ++ F+L   GD T ++   FGY I 
Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERD-VMDPAFEEAAFALENIGDTTGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K S    + EV  DI  ++    A ++  E    LE+       S+D+ +     
Sbjct: 358 KLDEVKASQAQPYTEVATDIKQELLDQHAVDQFYEQQTELEKVAFEFPDSLDDSAEAINA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                  +  A       EV   P   Q +     K+D L+    + +     + V+++E
Sbjct: 418 KITTTDFISQA----DAPEVLMTPAVMQAILSPEVKEDGLN-SEVIEVAPEHVIVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           +       L EV   V      VK  ++       LV E  +       +  +       
Sbjct: 473 TRDETVLPLAEVKDQVVAALSAVKAEQQAVELGVSLVNELKQGN---EAVLADNSLEFTE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDK 589
              I+R    N        + V     + V     +   + VV +++            +
Sbjct: 530 LETIDR----NSPLAASVFALVKPEAGQAVFGQSKDQDGNIVVVELSKVTAEINPAYSTQ 585

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             + L ++ N+  L +V+  L+    V 
Sbjct: 586 LGAQLERVGNQQDLTNVLNVLRKNSDVE 613


>gi|144898531|emb|CAM75395.1| peptidyl-prolyl cis-trans isomerse D [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 645

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 143/628 (22%), Positives = 290/628 (46%), Gaps = 9/628 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59
           ML+  R AS++WV K+   +L + FL WG+ D   +   G    ++VG +    +  +  
Sbjct: 22  MLDSFRNASKSWVIKVLFGLLVLSFLAWGVEDVARNGLFGRGPAITVGDRDFAAAEVMVE 81

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +K+++  +  + G  ++   AR +GL  + +D++V+   +D+    + L      V  ++
Sbjct: 82  FKRDMDQLQPQFGGKLSMADARKLGLMDRTIDSIVTRTLVDEAARGLSLATSDDEVIAKV 141

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
           A  P F  +  +F  D+    L+R G +E+E++      + RT +     GG+     L 
Sbjct: 142 AAEPSFRNQLGQFDRDLLRQALSRAGWSEQEFMRQEKDNILRTQLAESLSGGLTAPQALT 201

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           +   R+  E R  + + +    +P  A P  A L Q+++   +++ APE++ I+ +L   
Sbjct: 202 EPLIRWKRETRQAETVSIKASSMPQPAAPDAATLEQYYKANANSFMAPEFRAITALLLRT 261

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  + + ++++ L   Y+  ++++ SPE RTV Q+V  +   AD+A + +K GK    +
Sbjct: 262 TDAGRGLTVTDEMLTEAYKAREDEFHSPERRTVSQIVLADDASADKAAEMVKAGKDIKVI 321

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           A++ G  ++ I LG   K  +PD  LA  +F + + G  T  +  + G+ +A V+ I   
Sbjct: 322 AKDLG--VNVIELGLVEKGDLPD-ELAGPVFDVGQ-GALTQPVKSALGWHVAKVTAITAE 377

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            T S  EV++ +A  +   K+ +++ E   ++E+ L  G +++E + R ++  + +  +D
Sbjct: 378 KTRSLAEVREMLAADILREKSMDRITELTNQVEDSLGGGATLEETATRFQLPLVRIAAMD 437

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
             G+   GK V  +P  E  L   F  +   ++     +       +++    P + + L
Sbjct: 438 AKGRAPNGKPVTDLPGGESFLDVAFHTEQG-TESQLTEMDGNGLFLLRVDSITPPQPKVL 496

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            EV T+    W+  +      + A+++  E  K G+    + ++L     T+    R   
Sbjct: 497 SEVRTEAVAAWQAEQRQAAAKALADKI-AERVKAGEPLAKVAQSLSLKAETSAPFTREGG 555

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV-VFKVTNSKVGPVQEKDKFISYLTQ-M 597
           E        ++ +F G    V+  P  +G     + KV         +  + I   T   
Sbjct: 556 EASKMPPAIVTALFDGKPGRVEAAPSRDGWMVAQLDKVMAFDAKADAKAAEQIRKRTNSA 615

Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           ++ DL+D  IA L  +  V V  + + R
Sbjct: 616 VSVDLIDQYIAALNVEMGVKVDRSQLSR 643


>gi|260773190|ref|ZP_05882106.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio metschnikovii CIP
           69.14]
 gi|260612329|gb|EEX37532.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio metschnikovii CIP
           69.14]
          Length = 619

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 119/631 (18%), Positives = 259/631 (41%), Gaps = 32/631 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E +R+   +   KI L ++ + F+  G+ + +    G++    VG+ ++    F  ++
Sbjct: 1   MMERLREGVNSIAVKIILGLIILSFIFAGVGNYIVG-GGNNAAAKVGKTEISRGEFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++  A       L + +LD++++   ++Q  + +GL     +V  
Sbjct: 60  QNERNRMQSQLGDYFSTLLADPTYVASLRRSVLDSMINDILIEQHAQSLGLRVSDNQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F     +F  +++ S L R G     + ++  + L R  +V            
Sbjct: 120 AIIAMPEFQSA-GQFDQNIYQSALRRAGFTPDAFAEYMRRSLVRDQLVAALQTSEFTLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++       + R V  I L           ++  + Q++++  D Y  PE  RISYI  
Sbjct: 179 EVEGLSALVAQARDVRTITLPTTDFAKDVQLTDQEIEQYYQQNDDRYTRPEQMRISYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
              + ++ I I++++ +A Y+ +++KY S E R V  ++    +++ A      L  G  
Sbjct: 239 AAQQLKEAITITDEQTKAFYDAHQDKYASKEQRKVSHIMIQGDDEQAAQAILDQLHNGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F QLA+E+ + +        LG    + + D +   + F+L + G+ + ++   FGY + 
Sbjct: 299 FAQLAKEKSQDIGSSQEGGELGWIEPDTM-DAAFESAAFALQQVGEISGLVKSDFGYHVI 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            +  +K      +++V  +I  +++  +A ++  +    LE       S D +    K +
Sbjct: 358 KLDELKAPVIKPYEQVAVEIKAELQDQQAVDRFYQLQTELERIAFE--SPDSLDEAAKAI 415

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
             D+   DF     +   + + P   Q L +   K+D L+ D  + +     + V+++++
Sbjct: 416 GADIQHTDFISV-AELPAILSAPAVIQALRQPEVKEDQLNSD-AIEIAPEHVVVVRVEQT 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P     L EV   +      +K  ++    AN LV   +    +  D  +      L  
Sbjct: 474 RPEIILPLAEVREQIVATLSRLKAEQQALQLANDLVTGLNAGDNSLLDTHQ------LAF 527

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVG-PVQE 586
           ++I RMD             VFS P       V     +   + VV  +         Q 
Sbjct: 528 SEIQRMDR-----SSPLAEIVFSMPKPEGEHHVYAHGKDAQGNVVVIALAAVTTEVDPQL 582

Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             +  + L+++  +  ++ ++  L+    + 
Sbjct: 583 NQQIGAQLSRIGLQQNVEGILGVLRQNTKIQ 613


>gi|86148518|ref|ZP_01066806.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. MED222]
 gi|85833709|gb|EAQ51879.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. MED222]
          Length = 621

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 118/628 (18%), Positives = 244/628 (38%), Gaps = 26/628 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   + +  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYI-TGGGNNAAAKVGNTEIARGEFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G       A         K +LD +++   L+Q  E +GL     ++  
Sbjct: 60  QNERNRMQSQLGDYFAQMLADPTYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F     +F  +V+ S L R G + + + ++  + L R  +V    G       
Sbjct: 120 MILEMPQFQTA-GQFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   +   + R +  + L+   +    + ++  +  ++++    Y  PE  ++SYI  
Sbjct: 179 EIDIQSKLIAQTRDIRTVTLSVADLAKNIELTDEQIELYYQENPAAYTRPEQAKVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++E+S++E Q  Y+++ +KY + E R V  ++    ++ +A      L  G  
Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LAEE+            LG   ++ + D +  D+ F+L   GD T ++   FGY I 
Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERD-VMDPAFEDAAFALVNIGDTTGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
            +  +K S    + EV  +I  ++    A ++  E    LE+       S+D+ +     
Sbjct: 358 KLDELKASQAQPYTEVAAEIKTELLDQHAVDQFYEQQTELEKVAFEFPDSLDDSAEAINA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                  +  A       EV   P   Q +     K+D L+    + +     + V+++E
Sbjct: 418 KITTTDFISQA----DAPEVLMTPAVMQAILSPEVKEDGLN-SEVIEVAPEHVIVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           +       L EV   V      VK  ++       LV E  +       +  +       
Sbjct: 473 TRDETVLPLAEVKDQVVAALSAVKAEQQAVELGVSLVNELKQGN---EAVLADNSLEFTE 529

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDK 589
              I+R    N        + V     + V     +   + VV +++            +
Sbjct: 530 LETIDR----NSPLAASVFALVKPEAGQAVFGQSKDQDGNIVVVELSKVTAEINPAYSTQ 585

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             + L ++ N+  L +V+  L+    V 
Sbjct: 586 LGAQLERVGNQQDLTNVLNVLRKNADVE 613


>gi|312113155|ref|YP_004010751.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218284|gb|ADP69652.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 633

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/637 (22%), Positives = 268/637 (42%), Gaps = 18/637 (2%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           + ++RK +      I   +L   F I    +         +V +VG   +    F  +++
Sbjct: 1   MHMLRKVA----VFIMFAILIGAFAISMGGNYYGDRERRQSVATVGSASISPEDFRRAYQ 56

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           + L  +SQ+ G  ++   A++ GL  ++L  L+  A LD   +++G+      V   I  
Sbjct: 57  RVLENVSQQAGRRISPAEAQAFGLPNRVLQGLIQDAALDLEAKELGVGLSEEGVRRGITS 116

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
             +F  K   FS D +   L   G     +   Y   L R  + G+F G       LL+ 
Sbjct: 117 LDVFQDK-GVFSADKYHRFLQNIGYTAPFFEQEYRGDLIRRQLRGVFDGSGVVPKALLEA 175

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
             ++  E R++ Y  L      A+  P+ A L  ++E  K  +  PE +++S +      
Sbjct: 176 YNKYGNEQRTLAYFTLTPEAAGAVPAPTEAELQAFYEDRKPQFMTPELRKVSALAISPQT 235

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLA 300
             K + I +++L+AEY      Y  PE R +E + F  + +AD A+  LK G    + +A
Sbjct: 236 VAKSLTIPDEDLKAEYAAKASVYSVPERRKLEIVPFKTRADADAAYAKLKSGARDLLGVA 295

Query: 301 EEQGKSLSDISLGSFSKEYIPDV-----SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           ++ G S  +I  G  S++ + D      ++    FS  +KG  +  + G    VI  V  
Sbjct: 296 KDAGFSQPEIDAGVVSRKELADKFGINDAIVKEAFS-TEKGWTSRPVDGPVSTVIMRVLE 354

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           + P    SF EVK  I   +  T+A  + +   K  EE  + G  + + +++  +  ++ 
Sbjct: 355 VVPGQERSFAEVKDQIRADLAKTRAQSEFQRLIKAFEEDRSTGIPLADSAKKLNLP-LEE 413

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
             +D + KD  GK V         L     K D   ++  + L  G Y W ++ + +  R
Sbjct: 414 VTIDRSAKDADGKPVTVSVVPAAQLADAAFKSDVGVENEAIRLQGGGYAWFEVADVVKPR 473

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
            + LEEV  +V+  W+  +  + ++S+A  LV    K G+    + K++GA++ T+  + 
Sbjct: 474 QKPLEEVKGEVEAAWRADQVRDRLASRARDLVARLDK-GETIDAVAKSVGATVKTSQPLK 532

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF---KVTNSKVGPVQEKDKFIS 592
           R   E+       I+Q F+ P         ENG S  VF   K+T       ++      
Sbjct: 533 RNGKEDGV-PPAAIAQAFTLPEGGAGSAGSENGTSRAVFQLAKITQPGPLAEEQAKGLEQ 591

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
            L   ++ D     +  + +   +++          G
Sbjct: 592 QLAGAISDDNFSGFLNRITTASPISIDRKAFANVSGG 628


>gi|327484462|gb|AEA78869.1| Peptidyl-prolyl cis-trans isomerase ppiD [Vibrio cholerae
           LMA3894-4]
          Length = 616

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 118/627 (18%), Positives = 248/627 (39%), Gaps = 27/627 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S   ++        ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGNNAAA----NAEISRGDFEQAY 56

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 57  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 116

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G       
Sbjct: 117 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 175

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +  PE  ++SY+  
Sbjct: 176 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 235

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 236 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 295

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+ + L       SLG    + + D +   + F+L +KG  + ++   FGY I 
Sbjct: 296 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 354

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410
            + +IK      + EV++ I  ++   +A +        LE+       S+DE ++    
Sbjct: 355 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             +    +       +  EV   P   Q L     K+D L+    + +     + V+++E
Sbjct: 415 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 469

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P     L+EV + V +    +K  ++     NQLV    K G+   D+    G S   
Sbjct: 470 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 526

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
              I+R              Q   G     +    +  +  +      SK+ P    ++ 
Sbjct: 527 LQMIDRSSPLANTVYAMVKPQ--EGEKVYAQAKDFDGNIVVIELSKVESKLTPA-YHEQI 583

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + L ++ ++  L  VI+ L+    + 
Sbjct: 584 ATQLERIGSQQDLAGVISVLRQNTDIE 610


>gi|120599410|ref|YP_963984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|146292594|ref|YP_001183018.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|120559503|gb|ABM25430.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|145564284|gb|ABP75219.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|319425896|gb|ADV53970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens 200]
          Length = 618

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 116/634 (18%), Positives = 254/634 (40%), Gaps = 39/634 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S+  +AK  LV++ + F   G+S  L S +       V   K+  +    ++
Sbjct: 1   MLEKIRDGSQGVIAKSILVLVILSFAFAGVSSYLGSTT-DVPAAEVNGDKITKAELEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A       + + +L+ LV+   +DQ    +GL     ++  
Sbjct: 60  QSERSRMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAASTMGLRVSDEQIIT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF ++ + + L + G   + + +     ++R  +    VG       
Sbjct: 120 AIKLEPAFQ-TDGKFDNERYQAILRQLGYQPQSFRNMMRVDMTRRQLTAALVGTEFVLPS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              Q      + R + Y+V+++    A A  ++  +  +++  +  + +PE   + Y+  
Sbjct: 179 EAKQLAELQGQTRDIRYLVVDSAPFLANATVTDEQVKNYYDANQGQFMSPEQVSLEYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----ADEAFQSLKK 292
           +  +  K   ++++E QA Y+++K +Y + E R    ++    ++     A +  + L  
Sbjct: 239 NAADFAKNSPVTDEEAQAYYDEHKTQYLANEKRLAAHILINADQDDAATKAADLAKQLDN 298

Query: 293 GKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           G  F +LA+           G    + +  + + +   ++F+L  KG+ + V+   FGY 
Sbjct: 299 GADFAELAKAHSDDRLSAEQGGKLEWFEPGVMEPTFDAALFAL-NKGEHSAVVKTGFGYH 357

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           I  + +++   TV F +VK  I  Q++  KA ++      +L +        D ++   K
Sbjct: 358 IIKLLDVQAGATVPFADVKAKIVAQLQDKKAVDQFYSLQSKLADTSYEVP--DTLAETAK 415

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQ 467
           ++ + +       +D   + +     K  L+   F     L       + L     + ++
Sbjct: 416 VLGVSIKTTPLFSRDDAPEGLN----KPDLVKAAFSDTVKLKGLNSEVIELEPNHVVVIR 471

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           +KE   A    L EV  ++ +  K  +  E   +KA +L+ +                  
Sbjct: 472 VKEHHDAGTLALAEVKANITERLKQDQANEAARAKAQELMTQVK---------AAATDLG 522

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF-KVTNSKVG 582
           L++  ++ R +   +      + + F  P      +V    + NG + +   KV  ++  
Sbjct: 523 LVSKVKLGRGE---QNVDAAIVGKAFQMPTPSSTPVVDIVGLANGYAVIALDKVNAAEGV 579

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
             +  +     L    ++     +I  LK+   V
Sbjct: 580 SDELVNALKQRLNAQYSEADYRGLIDSLKANAKV 613


>gi|153827658|ref|ZP_01980325.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MZO-2]
 gi|149737864|gb|EDM52769.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MZO-2]
          Length = 592

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 111/548 (20%), Positives = 227/548 (41%), Gaps = 21/548 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +   F    + + L R G   + Y ++  K L R  ++    G     + 
Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  I L+          S+  + Q+++   + +   E  ++SY+  
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRSEQVKVSYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++ + +   Q  Y+++ +KY + E R V  ++    ++++A      L  G  
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+ + L       SLG    + + D +   + F+L +KG  + ++   FGY I 
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410
            + +IK      + EV++ I  ++   +A +        LE+       S+DE ++    
Sbjct: 358 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             +    +       +  EV  IP   Q L     K+D L+    + +     + V+++E
Sbjct: 418 TVVHTDFISAE----QAPEVLTIPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P     L+EV + V +    +K  ++     NQLV    K G+   D+    G S   
Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529

Query: 531 TNQINRMD 538
              I+R  
Sbjct: 530 LQMIDRSS 537


>gi|217973906|ref|YP_002358657.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS223]
 gi|217499041|gb|ACK47234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS223]
          Length = 621

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 129/637 (20%), Positives = 251/637 (39%), Gaps = 43/637 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S+  +AK  LV++ + F   G+S  L S +       V    +  +    ++
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSTT-DVPAAEVNGDIITKAELEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A       + + +L+ LV+   +DQ  + +GL     ++  
Sbjct: 60  QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +   P F   D KF +D + + L + G   + + D     ++R  +    VG       
Sbjct: 120 AVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              Q      + R V Y+V+++    A A  ++  +  +++  +  + +PE   + Y+  
Sbjct: 179 EAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
           +  +  K   +S++E QA YE++K +Y S E R    ++          + +A++  + L
Sbjct: 239 NAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAEDLAKQL 298

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F  LA+              L  F    + D +   ++F+L  KG  + V+   F
Sbjct: 299 DSGADFADLAKANSDDTLSAEQGGKLDWFEPG-VMDPAFDAALFAL-NKGQHSAVVKTDF 356

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ I  + +++P  TV F +VK  I  Q++  KA ++      +L +        D +S 
Sbjct: 357 GFHIIKLLDVQPGVTVPFADVKAKIVAQLQDKKAVDQFYSLQSKLADTSYEVP--DTLSE 414

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
             K V +D+       +D     V A   K  L+   F +   L       + L     +
Sbjct: 415 TAKAVGVDIKTTPLFSRD----NVPAALNKPDLVKAAFSETVMLKGLNSEVIELEPNHVV 470

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            V++KE   A    L EV  ++ +  K  +  E   +KA +L+ +      +   + K  
Sbjct: 471 VVRVKEHHDAGTLALAEVKANITERLKQDQANEAARAKAQELMAQVKAGATDLGLVAKA- 529

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVFKVTNSK 580
                      ++    +      + + F  P      +V    + NG + V     N+ 
Sbjct: 530 -----------KLGRGAQDVDAAIVGKAFQMPTPSTSPVVDTVGLANGYAVVALDKINAA 578

Query: 581 VGPVQE-KDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
            G   E  +     L    ++     +I  LK+   V
Sbjct: 579 EGVSDELVNALKQRLNAQYSEADYRGLIDSLKANAKV 615


>gi|260596813|ref|YP_003209384.1| periplasmic folding chaperone [Cronobacter turicensis z3032]
 gi|260215990|emb|CBA28646.1| Peptidyl-prolyl cis-trans isomerase D [Cronobacter turicensis
           z3032]
          Length = 645

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 126/636 (19%), Positives = 257/636 (40%), Gaps = 32/636 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+S+ L     S+    V  Q++  +   N+ 
Sbjct: 21  MMDNLRAAANHVVLKIILGLIILSFILTGVSNYLIG-GNSNYAAKVNDQEISRAQLENAV 79

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + +++G   +   S       L ++ L  L+  A +DQ+   + LE    +V  
Sbjct: 80  NIERNNLERRMGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLEISDEQVRQ 139

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   D KF +  + + +   G++  +Y       L+   +V   +G       
Sbjct: 140 SIFKNPAFQS-DGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVMGSDFILPG 198

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             DQ    + + R      +    +      S   +  +++++ +N+++PE  R+SYI  
Sbjct: 199 ESDQFAALFAQQRQARTATIVVDALAEKQQVSEQEIKDYYQQHANNFQSPEQFRVSYIKL 258

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D     +    S DE+QA Y+K+++++  PE      +    + EA      LK+G  F 
Sbjct: 259 DAAALAENA--SEDEIQAYYDKHQDEFGQPERNRYSLIQTKTEAEAKAILAQLKQGADFA 316

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G       PD    ++   L  KG  + VI  S G++I  +
Sbjct: 317 TLAKEKSVDVITARNGGDMGWLEPGTTPD-EFKNA--GLKDKGQLSDVIKSSVGFLIVRL 373

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +  P+      EV  DI+ +++  KA +      +++ +  A     + +   EK   +
Sbjct: 374 DDTTPAKVKPLSEVHDDISAKVKQEKALDAFFALQRKVSD--AANNDNESLVSAEKAAGV 431

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                D+  +D    E+   P  + +    + G +     +  +   DG   +V +I + 
Sbjct: 432 KAVDTDWFSRDAVPVELNFKPVTDAVFGGNLLGANGTPGSNSDIITVDGDRAFVLRITDH 491

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P  ++ L +V   V    K  K  +  + +A +L+    K GK    + K  G +    
Sbjct: 492 KPQAEKPLADVKEQVTALVKHQKALKAANEEAQKLLSAL-KAGKGDEAL-KAAGIAFSPA 549

Query: 532 NQINRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQ 585
               R   +           VF+   P +    + I N +  + V+  + + + G  P  
Sbjct: 550 KTFERTTQD------TLTQPVFALPLPAKDKPSYGIGNDMQGNVVLLALDDVRSGTMPDA 603

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
           +K      L Q   +   D+++  L+    + + D 
Sbjct: 604 QKKAMGQRLIQNNAEIAFDALLKGLRKDAKIKLGDA 639


>gi|292490923|ref|YP_003526362.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
 gi|291579518|gb|ADE13975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
          Length = 637

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 111/644 (17%), Positives = 255/644 (39%), Gaps = 38/644 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  ++   A + + ++ +PF +WG+++  F   G +   SV  +++    F  ++
Sbjct: 1   MLEAIRSRAQGIFAWVIVGLITIPFALWGINNY-FREGGEALAASVNGEEITTREFRAAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++    +   +    + E        +++L+ L+    +     ++GL      +   I 
Sbjct: 60  QRYTQQLRFLMREGFSEEMLDDPATKQRVLEGLIEQRLVLDAAGELGLGMSDSELSKVIH 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +  F  +  +F    + S L  +G+    Y       L    +          +   ++
Sbjct: 120 NNEAFQDETGQFDFQRYESVLNSQGLTTAAYEARLRLSLLSEQLASTLHLSAFATQQEME 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R + Y ++ +         S+  L Q++E++ D +R PE   + Y+     
Sbjct: 180 DIARLRHQEREIGYGIVPSSKFRDAIQISDEELRQYYEEHPDEFRTPERVAVDYLRLTAK 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288
                I +    L+  Y ++K+++ +PE R    ++               +++A+EA +
Sbjct: 240 SLATDIPVDEQTLRDLYAESKDQFGTPEQRRASHILVQVPQGGDDAARQAAREKAEEALR 299

Query: 289 SLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            L++G+ F ++A+E     G +     LG F +  + D +  ++ FSL K GD +  +  
Sbjct: 300 RLQQGEPFEEVAKEVSEDPGSAQQGGDLGFFGRG-VMDPAFEEAAFSLEKVGDLSEPVLS 358

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDE 403
            FGY I  ++ I+     SF+EV++++A + R   A E   E  + L+        +++ 
Sbjct: 359 KFGYHIIQLTGIQRGEAPSFEEVREELAQKYRQQLAEEHFYEQAETLDNLTYENPFTLEV 418

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
            +   ++          +G    G  + A P      F      + ++   T+ L     
Sbjct: 419 AAEALELPIETSEPFSRSG----GSGIGANPKVVTAAFSEEVLQEEMNSR-TLELGPNDL 473

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           + +++K+  PA  +  EEV   ++++    +   +   + + LV E  ++G+    +   
Sbjct: 474 VVLRVKKHFPADIKPFEEVREKIQENLTLERAKAKAREQGDALV-ERLRQGEAPESVFAG 532

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC-----FPIENGLSYVV--FKV 576
                   N+        +    + +   +  P    +       P+ +G   VV  + V
Sbjct: 533 E----EAWNEKKFYSRRGEGIPREILKMAYGLPHPQSESPVFAGQPLGSGDYAVVGLYTV 588

Query: 577 TNSKVGPVQEKDK--FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
            +  +  + EK +      + QM  +      I  L+++  + +
Sbjct: 589 KDGDLKQLDEKARQSLAQEVEQMHGQVAYRGFIDELRAEADIKI 632


>gi|304409715|ref|ZP_07391335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS183]
 gi|307304071|ref|ZP_07583824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           BA175]
 gi|304352233|gb|EFM16631.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS183]
 gi|306912969|gb|EFN43392.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           BA175]
          Length = 621

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 128/637 (20%), Positives = 252/637 (39%), Gaps = 43/637 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S+  +AK  LV++ + F   G+S  L S +       V    +  +    ++
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSTT-DVPAAEVNGDIITKAELEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A       + + +L+ LV+   +DQ  + +GL     ++  
Sbjct: 60  QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +   P F   D KF +D + + L + G   + + D     ++R  +    VG       
Sbjct: 120 AVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              Q      + R V Y+V+++    A A  ++  +  +++  +  + +PE   + Y+  
Sbjct: 179 EAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
           +  +  K   +S++E QA YE++K +Y S E R    ++          + +A++  + L
Sbjct: 239 NAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAEDLAKQL 298

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F  LA+              L  F    + D +   ++F+L  KG  + V+   F
Sbjct: 299 DSGADFADLAKANSDDTLSAEQGGKLDWFEPG-VMDPAFDAALFAL-NKGQHSAVVKTDF 356

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ I  + +++P  TV F +VK  I  Q++  KA ++      +L +        D +S 
Sbjct: 357 GFHIIKLLDVQPGVTVPFADVKAKIVAQLQDKKAVDQFYSLQSKLADTSYEVP--DTLSE 414

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
             K V +D+       +D     V A   K  L+   F +   L       + L     +
Sbjct: 415 TAKAVGVDIKATPLFSRD----NVPAALNKPDLVKAAFSETVMLKGLNSEVIELEPNHVV 470

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            V++KE   A    L EV  ++ +  K  +  E   +KA +L+ +      +   + K  
Sbjct: 471 VVRVKEHHDAGTLALAEVKANITERLKQDQANEAARAKAQELMAQVKAGATDLGLVAKA- 529

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVF-KVTNS 579
                      ++    +      + + F  P      +V    + NG + V   KV  +
Sbjct: 530 -----------KLGRGAQDVDAAIVGKAFQMPTPSTSPVVDTVGLANGYAVVALDKVNAA 578

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           +    +  +     L    ++     +I  LK+   V
Sbjct: 579 EGVSDELVNALKQRLNAQYSEADYRGLIDSLKANAKV 615


>gi|126173842|ref|YP_001049991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
 gi|125997047|gb|ABN61122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
          Length = 621

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 128/637 (20%), Positives = 252/637 (39%), Gaps = 43/637 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S+  +AK  LV++ + F   G+S  L S +       V    +  +    ++
Sbjct: 1   MLEKIRDGSQGLIAKGILVLVILSFAFAGVSSYLGSTT-DVPAAEVNGDIITKAELEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A       + + +L+ LV+   +DQ  + +GL     ++  
Sbjct: 60  QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +   P F   D KF +D + + L + G   + + D     ++R  +    VG       
Sbjct: 120 AVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              Q      + R V Y+V+++    A A  ++  +  +++  +  + +PE   + Y+  
Sbjct: 179 EAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
           +  +  K   +S++E QA YE++K +Y S E R    ++          + +A++  + L
Sbjct: 239 NAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAEDLAKQL 298

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F  LA+              L  F    + D +   ++F+L  KG  + V+   F
Sbjct: 299 DSGADFADLAKANSDDTLSAEQGGKLDWFEPG-VMDPAFDAALFAL-NKGQHSAVVKTDF 356

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ I  + +++P  TV F +VK  I  Q++  KA ++      +L +        D +S 
Sbjct: 357 GFHIIKLLDVQPGVTVPFADVKAKIVAQLQDKKAVDQFYSLQSKLADTSYEVP--DTLSE 414

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
             K V +D+       +D     V A   K  L+   F +   L       + L     +
Sbjct: 415 TAKAVGVDIKTTPLFSRD----NVPAALNKPDLVKAAFSETVMLKGLNSEVIELEPNHVV 470

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            V++KE   A    L EV  ++ +  K  +  E   +KA +L+ +      +   + K  
Sbjct: 471 VVRVKEHHDAGTLALAEVKANIAERLKQDQANEAARAKAQELMAQVKAGATDLGLVAKA- 529

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVF-KVTNS 579
                      ++    +      + + F  P      +V    + NG + V   KV  +
Sbjct: 530 -----------KLGRGAQDVDAAIVGKAFQMPTPSTSPVVDTVGLANGYAVVALDKVNAA 578

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           +    +  +     L    ++     +I  LK+   V
Sbjct: 579 EGVSDELVNALKQRLNAQYSEADYRGLIDSLKANAKV 615


>gi|153000126|ref|YP_001365807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS185]
 gi|160874748|ref|YP_001554064.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS195]
 gi|151364744|gb|ABS07744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS185]
 gi|160860270|gb|ABX48804.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS195]
 gi|315266990|gb|ADT93843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS678]
          Length = 621

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 128/637 (20%), Positives = 252/637 (39%), Gaps = 43/637 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S+  +AK  LV++ + F   G+S  L S +       V    +  +    ++
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSTT-DVPAAEVNGDIITKAELEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A       + + +L+ LV+   +DQ  + +GL     ++  
Sbjct: 60  QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +   P F   D KF +D + + L + G   + + D     ++R  +    VG       
Sbjct: 120 AVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              Q      + R V Y+V+++    A A  ++  +  +++  +  + +PE   + Y+  
Sbjct: 179 EAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
           +  +  K   +S++E QA YE++K +Y S E R    ++          + +A++  + L
Sbjct: 239 NAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAEDLAKQL 298

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F  LA+              L  F    + D +   ++F+L  KG  + V+   F
Sbjct: 299 DSGADFADLAKANSDDTLSAEQGGKLDWFEPG-VMDPAFDAALFAL-NKGQHSAVVKTDF 356

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ I  + +++P  TV F +VK  I  Q++  KA ++      +L +        D +S 
Sbjct: 357 GFHIIKLLDVQPGVTVPFADVKAKIVAQLQDKKAVDQFYSLQSKLADTSYEVP--DTLSE 414

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
             K V +D+       +D     V A   K  L+   F +   L       + L     +
Sbjct: 415 TAKAVGVDIKTTPLFSRD----NVPAALNKPDLVKAAFSETVMLKGLNSEVIELEPNHVV 470

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            V++KE   A    L EV  ++ +  K  +  E   +KA +L+ +      +   + K  
Sbjct: 471 VVRVKEHHDAGTLALAEVKANIAERLKQDQANEAARAKAQELMAQVKAGAMDLGLVAKA- 529

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVF-KVTNS 579
                      ++    +      + + F  P      +V    + NG + V   KV  +
Sbjct: 530 -----------KLGRGAQDVDAAIVGKAFQMPTPSTSPVVDTVGLANGYAVVALDKVNAA 578

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           +    +  +     L    ++     +I  LK+   V
Sbjct: 579 EGVSDELVNALKQRLNAQYSEADYRGLIDSLKANAKV 615


>gi|332992311|gb|AEF02366.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           sp. SN2]
          Length = 630

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 117/641 (18%), Positives = 260/641 (40%), Gaps = 30/641 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+   A   + ++ + F+  G+   L S SG++ V +V  +++        +
Sbjct: 1   MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYLTS-SGTTAVATVNGEEISAQELERGY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + +   +  + G  +    S         + +LD L++   + Q  +++GL     ++  
Sbjct: 60  QNQRAQMESQFGESIAQLFSSEQYLSDFRRNVLDRLIAEKLIQQQAQEMGLRVSDAQIRE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I + P F     +F +D F + L + G    ++ D+    +++  +             
Sbjct: 120 TIVQMPEFQF-GGQFDNDRFQTILRQNGFQVADFRDYLRIQMTQNQLAAALTNSEFALPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             ++A     + R   Y+++++       + +   + +++      +   E  +++Y+  
Sbjct: 179 EAERANALQLQTRDAKYVMIDSASFAESVEVTEDDIAEYYNANITAFDTEEQIKLAYVSL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------FQSL 290
            V + + ++ + ++ ++  Y+ N   Y   E R V  ++  +  +AD A          L
Sbjct: 239 TVEDVKSRVSVDDEAVRTYYDNNLSGYGKEEERRVSHILIESGDDADAAKAKTQALLDQL 298

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             G  F +LAE           G    F    + D +  +++FSLA  GD+T V+   FG
Sbjct: 299 NDGADFAELAENNSDDTFSAENGGDLDFITPGMMDDAFDEAVFSLANVGDYTDVVETEFG 358

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406
           + I  ++ +K +   +F++V+ +I   +   KA E+  E    + E       ++++++ 
Sbjct: 359 FHIIKLTELKEAQVQAFEDVEAEIRETLLTDKALEEFFELQNTMAEIAFEVPDTLEDVAN 418

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
              +   +  L       V      + P   ++ F     D+ ++ D  + L D + + V
Sbjct: 419 AVDLPVQETGLFSRNTVPVN----MSSPALTEVAFSSELIDEGVNSD-IIELDDETVVVV 473

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++ E +P R + L+EV   +    K  K  E   S A  +V E  ++G++          
Sbjct: 474 RVVEHLPQRTQALDEVRDGIVSTVKAQKAQEAAESWATSVV-ESLQQGESVDATLAEKSL 532

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVV--FKVTNSKV 581
           +  +   + R  +         + ++F+   E    V      +G   +V   KV ++  
Sbjct: 533 NWESAEAVARSGST---LNRSIVDKLFTLSTEAEKRVDVIATVSGDVAIVELVKVNSAPA 589

Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
              +  +     L QM  + +    I  L++   VTV +NL
Sbjct: 590 LSAEMSESLKPRLAQMQGQRVYQQFIEALRADADVTVSENL 630


>gi|121602029|ref|YP_988842.1| hypothetical protein BARBAKC583_0527 [Bartonella bacilliformis
           KC583]
 gi|120614206|gb|ABM44807.1| conserved hypothetical protein [Bartonella bacilliformis KC583]
          Length = 629

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 149/638 (23%), Positives = 306/638 (47%), Gaps = 16/638 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+ IR  + +WV KIF  +L + F+  WG+     ++   S +++ G+  +    +  +
Sbjct: 1   MLDSIRNTTNSWVTKIFFAILLLCFVFLWGIPQ--LNIKNESNLLTSGKSVITVDDYRLA 58

Query: 60  WKQE--LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
                    ++ ++G +++ +  +  G+   +   L      D+    + +      +  
Sbjct: 59  LADYSLRLALASQLGRMLSPDEIQQYGIPAFVFYQLQQDILFDEQARKMKISLSQDALAH 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I+   +F   +  F+ ++F++ L +  I++  ++D+YT+   R  ++   + G +  NL
Sbjct: 119 IISSDSIFQ-TNGNFNRNLFLNYLQQLNISQSHFLDYYTQREKRNQLILASLSGAKIPNL 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +       E R+ DY+V+N      I+ P+   L +WF+ +++ +RAPEY+ +S +  
Sbjct: 178 FYEAFALHREEKRTADYLVVNLEKEKKISTPNKETLQKWFDTHRNMFRAPEYRTVSLLSI 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
             ++  K   IS +E    Y +N  ++  PE R +E+L FP ++ AD+A Q +  G  F 
Sbjct: 238 TPNDFVKLENISANEAMTYYNQNASRFTVPEKRIIEELRFPTREAADKAAQKIANGMSFD 297

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           QL + + K+L DI  G  ++  +P+  LA  IF L K+G  + VI+   G +I  V  I 
Sbjct: 298 QLVQSEKKTLKDIKKGPLAESELPNY-LASDIFEL-KQGQISAVINDLQGPIIVRVMQII 355

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           PS  + F+++++DI   +   +A   ++  Y  +E     G S+ E++ +  +    +  
Sbjct: 356 PSGPIPFEDIEQDIRQTLAQNRAVTDLRSKYTEIENARFEGASLKELADQYNLSLRQI-T 414

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           +D  GK ++G  +  +P KE +L  ++   +    D  ++L +G Y+W Q+    PARD+
Sbjct: 415 IDKEGKTIEGVMLTDLPQKEIVLSAIYQATEGSELD-PLSLQEGGYLWYQVDAITPARDK 473

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
            LEEV  +   +WK  K  + +  KAN ++ + + EGK+   +   L     TT  + R 
Sbjct: 474 ALEEVEKEAVAEWKNAKIQQLLDEKANNILKQLT-EGKSLDSLAAKLSVKKKTTPALRRQ 532

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
           D+ +   G +G+  +FSGP             + +++K+T S +          S + + 
Sbjct: 533 DSSD-ILGIEGVKALFSGPKGHYGIIKGAVATNRIIYKITESSIPKNVTAQTIPSDIRED 591

Query: 598 MNKDLLDSV-IAYLK---SQYSVTVHDNLIQRYLDGEK 631
           M+  L + + +  L+    ++ + ++ +   +     +
Sbjct: 592 MDMTLKEDLKLGMLQIANEEHPIEINGSNYNQLFSTSQ 629


>gi|310766848|gb|ADP11798.1| putative protease maturation protein [Erwinia sp. Ejp617]
          Length = 623

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 120/632 (18%), Positives = 258/632 (40%), Gaps = 32/632 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R AS   V K+ L ++ + F++ G+   L   SG      V  Q++  +    ++
Sbjct: 1   MMDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSG-DYAAKVNGQEIGRAQLERAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E     Q +G   +           + ++ L  L+    L Q+ ++IGL     ++  
Sbjct: 60  SSERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +  ++S +   G    +Y +   K L+   ++G   G       
Sbjct: 120 AIFTQPAFQ-TDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTGTDFVLGN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D       + R V  + +N   + A  + +   +  ++++++ +  +PE  R+SYI  
Sbjct: 179 ETDSLAALVAQQRLVREVTINVNAMAAKQNVTQEEIANYYQQHQSSLMSPEQFRVSYIKM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S  ++Q+ Y+++++ Y  P+      +    + EA     +LKKG  F 
Sbjct: 239 DASAM--QQPVSESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALKKGGSFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +LA+E+        +   +G    E  PD        +L +KG  + VI  S G+++A +
Sbjct: 297 KLAKEKSADPISARNGGDMGWLEPETTPD---ELKNAALKEKGQLSDVITSSVGFIVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            + +P    +  EV  +IA +++  KA     +  +++ +  A     + ++  E++  +
Sbjct: 354 DDTQPEKVKALSEVHDEIARKLKQEKAVVAFYKLQQKVSD--AASNDNESLASAEQVAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                D+  +D    E+     ++ +    + G++     +  V   DG   +V +I+E 
Sbjct: 412 KAVDTDWFDRDNLPAELKFKAVQDAIFNGALLGENGAPGSNSEVITVDGDRAFVLRIREH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L++V   +    K  K  ++  ++A++L+ E  K GK   D  K         
Sbjct: 472 KPEAVKALKDVTAQITDTLKQQKGLQQAKAQADKLLAEL-KAGKG-DDALKAANLRFAAQ 529

Query: 532 NQINRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQ 585
             + R   +            FS   P +    + I      + V+  +   + G  P  
Sbjct: 530 QTLTRTGQD------ALTQAAFSLPLPPQGKPSYGISEDAQGNVVLIALDKVQKGGMPEA 583

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +K   +  +TQ   +    ++++ L+ +  + 
Sbjct: 584 QKQALVQGITQNNAQLAFAAMLSNLRKEAKIK 615


>gi|127513432|ref|YP_001094629.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
 gi|126638727|gb|ABO24370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
          Length = 621

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 123/634 (19%), Positives = 263/634 (41%), Gaps = 37/634 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  +AK  LV++ + F   G+S  L S S   +  +V  +++  S+   ++
Sbjct: 1   MLEKIREGSQGVIAKGILVLVILSFAFTGVSSYLGS-SSEPSAATVNGEEISKSALEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G + +   S  +    + + +L+ L++   +DQ   D+GL     ++  
Sbjct: 60  QSERARLEQQLGDMYDTLASNESYLASVKQNVLERLIADKLVDQAAADLGLTVSDQQIKT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +D +++ + + G     + D     ++R  +V   VG       
Sbjct: 120 AIMNEPAFQ-TDGKFDNDRYLALIRQLGYQANSFRDMMRGDMTRRQLVVTVVGSEFVLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +   +   + R + Y V++   + A    S+     ++++ +  +  PE   + YI  
Sbjct: 179 EAEYLAKIQGQTRDIRYHVVDAEPMLATVSVSDEEANTYYQQNQSLFVRPETISLDYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290
             ++    I++S++E +  Y++NK +Y  PE R    ++          + +A+     L
Sbjct: 239 SANQLASAIQVSDEEAKTYYDENKAQYLQPEKRLAAHILVSLGDDEDAAKAKAEAIMTKL 298

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           K G+ F  LA+           G    + ++ + +     ++F+L +KG ++ ++  SFG
Sbjct: 299 KAGEDFEALAKSDSDDSFSGEQGGKLDWFEQGVMEAPFDQALFAL-EKGQYSDIVKTSFG 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y I  + +++ + T  F+ VK  I  Q++  KA  +     +RL +        D ++  
Sbjct: 358 YHIIKLLDLQAASTSPFEAVKDKIVAQIQQDKAVNEFYTLQQRLSDVSYEVP--DTLAEA 415

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
            K V + +       +D   + + +    +         D        + L D   + V+
Sbjct: 416 AKEVGVAVKTSPVFTRDNAPEPLNSADVLKAAFSNTVLLDGM--NSDVIELGDNHVVVVR 473

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + +   A   +  +V   + +  K  K  E    KA +++             G  + A 
Sbjct: 474 VNKHAAAGTMEFADVKATIVERLKQDKANELARDKAQEMMAAIK---------GGEIPAE 524

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVF-KVTNSKVG 582
           ++T  Q++R +   +      +S+ F         +V    + NG + V+  KV  ++  
Sbjct: 525 MITRTQLSRGE---QGIDTSIVSKAFEMAQPAEQFVVDTAALANGYAVVILDKVNQAESV 581

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
                      L    +++   ++IA LK+Q  V
Sbjct: 582 DESLVTALKQRLNSQYSENDYRALIAALKAQAEV 615


>gi|90410786|ref|ZP_01218801.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
           profundum 3TCK]
 gi|90328417|gb|EAS44715.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
           profundum 3TCK]
          Length = 623

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 119/632 (18%), Positives = 241/632 (38%), Gaps = 26/632 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E +R+   +   K+ L ++   F+  G+   L +         +   ++  + F  ++
Sbjct: 1   MMERLREGVNSIWVKVILGLIIFSFVFAGVGSYL-AGGSQPAAAKINGTEISQNEFEQAY 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++   +        + +LD +++   ++Q   ++GL      +  
Sbjct: 60  QNERNRMQSQLGDYFSTLLGDPEYVKQFRQSVLDRMINDVLIEQRATELGLRISDEHIRK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +D +   L R G    ++ ++    + RT  +    G     + 
Sbjct: 120 TITSMPEFQR-DGKFDNDSYTMLLRRSGFTPDQFAEYMRTDMLRTQFLTAIQGSDFALDS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L   ++   + R V  + L+       A  ++     ++E+    +  PE  +++YI  
Sbjct: 179 ELTALRKLEAQQRVVRSLTLDLADFTKNATVTDEEAKVFYEQNPQMFTRPEQVKVAYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----ADEAFQSLKK 292
                +  +++S+++++A YE++K+KY S E R V  ++           A+     L  
Sbjct: 239 SGEGLKDTLDVSDEDVKAYYEEHKDKYSSIEQRQVSHILVQGDNADAKAKAEALKAELDA 298

Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F +LA               L  F +  + D +  D+ F LA  GD + V+  SFGY
Sbjct: 299 GADFSELALSSSDDTYSAKDGGKLDWFERG-VMDPAFEDAAFGLANSGDVSGVVKSSFGY 357

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRR 407
            I  +  +K S    F +V  +I  ++R  +A+E   +   +L E    +  S+D+ +  
Sbjct: 358 HIIKLDAVKASQVKPFADVSAEIIVELREQQAAEHFYDMQTKLAETAFEMPDSLDDAAAA 417

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
                     +         + V A P   Q LF    ++D L+ D  + +     + V+
Sbjct: 418 VNATVHTTDFISQT----DAQGVLATPAVMQALFSAEVREDGLNSD-VIEIAPEHVVVVR 472

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + +S        +EV   VK    + K  +    KA+ L+           D+ +  G S
Sbjct: 473 VDDSRDEMVLAFDEVSAKVKAQLASQKGEQNAQIKADDLIAALRAGS---ADVLEAEGLS 529

Query: 528 LLTTNQINRM--DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
                 I+R   D       +     V    V  +      N     + KV +  V    
Sbjct: 530 FGEEQTISRSGPDRMVSQVAFSLTKPVDDKSVYGMTRDATGNVQIIALDKVIDVDVAKEA 589

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               F   + QM  +  + + +  L+    V+
Sbjct: 590 ISGDFAKQVEQMNAQQDVAATLQALRDTAEVS 621


>gi|330446589|ref|ZP_08310241.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490780|dbj|GAA04738.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 630

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 124/637 (19%), Positives = 251/637 (39%), Gaps = 36/637 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E +R+ + +   KI L ++ + F+  G+   L S         V  +++    F  ++
Sbjct: 1   MMERLREGANSIWVKIILSLIILSFVFAGVGSYLAS-GNEQVAAKVNDKEISQREFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERA---RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + +   + Q++G   ++            K +LD +V+   ++Q   ++GL     +V  
Sbjct: 60  QNQRNQMQQRLGDYFSTLMGNPEYVQQFRKSVLDRMVNDELIEQRATELGLGVSDAQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D  F+++ +   L R GI+ +++ +   K + R   +          N 
Sbjct: 120 AIIEMPAFQ-VDGVFNNEQYNLTLRRAGISPEQFAESIRKDMLRQQFLSALQSSDFALNN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D+ ++   + R V  + LN          ++     ++++ K+ +  P   ++SYI  
Sbjct: 179 EVDELRKLESQERVVRTLKLNLADFTNKVTVTDEEAKAYYDENKNQFTRPAQVKVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKK 292
                   I+I++ E +  Y ++K KY + E R V  ++       ++ +A+     LK 
Sbjct: 239 SGKNLVNNIKITDQEAETYYNEHKSKYSTAEKRQVSHILVKGDSDASKAKAEALLAELKG 298

Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  +A++             L  F K  + D +  ++ FSLAK GD + ++  SFGY
Sbjct: 299 GANFADVAKKSSDDTFSAKDGGKLDWFGKG-VMDPAFEEAAFSLAKPGDMSGLVKSSFGY 357

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRR 407
            I  +  I+      F EVK  I  +++  + +E+  +   +L E       S+D  +  
Sbjct: 358 HIILLDGIEEPKVKPFAEVKASIIAELQEQQVAEQFYKLQSKLAETAFESPDSLDAAAEA 417

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
            K   +    +         K V A    ++ L      DD ++ D  + +     + V+
Sbjct: 418 VKAKVVTTGFISL----QDEKGVLADQKVQEALQSPEVHDDGMNSD-VIEIAPEHVVVVR 472

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + +S         +V   VK      K  ++ + KA+ ++    +EGK+  D+    G S
Sbjct: 473 VDDSREEAVLPFADVEAKVKTLLAQQKGEKQATEKADAIIAAL-REGKS--DVVAKDGLS 529

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEM-----VKCFPIENGLSYVVF--KVTNSK 580
                 + R   +            F+ P               NG   ++   KV N K
Sbjct: 530 FSGDQTVTRSGPDANV-----ARVAFTLPKPKEGKVSYGMARDNNGNVEIIALDKVVNVK 584

Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               +   +F + +  M  +  L + +  L+    VT
Sbjct: 585 PSADEVNSQFATQVENMFAQQDLAATLETLRESAKVT 621


>gi|238898000|ref|YP_002923680.1| PPIC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465758|gb|ACQ67532.1| PPIC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 624

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 126/635 (19%), Positives = 261/635 (41%), Gaps = 33/635 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E  R +++    KI L  + + F+  GL       + +  V  V  +K+  +    + 
Sbjct: 1   MMEYFRTSTKNLTLKIILFFIVLSFIAGGLGSYFIGRA-TDYVAKVNGEKISRAQLEQAL 59

Query: 61  KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G     +   +     L KK++D L++   + Q+   +GL+ D   V  
Sbjct: 60  QNERHRLKQQLGEHFLALADNKDYMQQLRKKVIDQLINQILIVQYTHHLGLKIDDEHVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I +   F   DN+F +  +++ ++  G    E+ +   + L    ++ +F         
Sbjct: 120 TIRKMSYFQ-TDNQFDNKKYLNLISNMGYTPDEFAELQRQQLINDQLLQIFGNSEFVLPN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            + +      + R V    LN          ++  +  +++K K+ +  PE  ++S+I+ 
Sbjct: 179 EIKRISALLLQKRHVRLATLNLNTFQNRQKVTDEEIKDYYDKNKNTFTNPEQVKVSFIIM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    E KI ++  E++  YE++  ++  PE++    +    +KEAD     LKKG  F 
Sbjct: 239 DAESMENKITVNKSEIKDFYEQHSAEFIQPELKNYSVIQLKTKKEADTTLDKLKKGALFS 298

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            LA+ +         G       PD ++ +    +L +KG  + VI  S GY I  +++I
Sbjct: 299 DLAKNKSIDSISRKKGGQLGWLEPDTTVDEIKQANLTEKGQLSGVIESSTGYFIFRLNDI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           KPS+      V+  +  +++  KA +      K++ E +        ++  E +  +   
Sbjct: 359 KPSYVKPLSIVRNQLIEKIKQEKAIQAYYVLQKKVSEAMINNH--KSLASAETVSGLKAQ 416

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT------VALPDGSYMWVQIKE 470
              F G++    E+   P    ++  +F  D    K  T      + L     + +++ E
Sbjct: 417 HTAFFGRNDVPSELNIKP----VIKAIFDGDWVAKKTQTGSDADMINLDGDRAVVIRVDE 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P R   L++V   V+K  +  K  +++  +  + +    KEGK   ++ K+ G S   
Sbjct: 473 HKPKRIEPLKKVRDKVQKQIRAQKAQKQILVEGEKFLAAL-KEGKGTSEM-KSAGLSFGE 530

Query: 531 TNQINRMDNENKFFGYDGISQVFSG-------PVEMVKCFPIENGLSYVVFKVTNSKVGP 583
              ++   + N       +  +F+        PV         NG+      VT  K+  
Sbjct: 531 EKALSYNSDHN-----ALVESIFALNLPTKNKPVYGFSFDQNNNGVLIEFLSVTEGKLTS 585

Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
             EK  FIS +    N   +++++  L+ +  + +
Sbjct: 586 -SEKQAFISNIQSGYNIANIEALLKNLRKEADIEI 619


>gi|119471187|ref|ZP_01613719.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Alteromonadales bacterium TW-7]
 gi|119445843|gb|EAW27125.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Alteromonadales bacterium TW-7]
          Length = 633

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 131/645 (20%), Positives = 260/645 (40%), Gaps = 33/645 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  VAKI L  + + F + G+   L   +    V  V   K+  + F  ++
Sbjct: 1   MLEKIREGSQGPVAKIILGAVILSFALAGIGSYL-GQTTEQPVAEVNGVKISQTEFNRAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q+ G       ++      + + ++D LV      Q   ++GL      V  
Sbjct: 60  QNERNRLEQQFGEYFTQIAADPNYMAQIRQGVIDRLVQQELQSQLAAELGLRVSDDTVRK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF++D ++  + +       + ++  + ++R+ +V    G       
Sbjct: 120 TILELPYFQLGD-KFNNDRYLQVIRQMNFQPDTFREYLREDMTRSQLVSAVAGTDFALES 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L  A     + RS+DY+V+N   +    + S   ++ +++     + +PE   ++Y+  
Sbjct: 179 ELKSAIALQQQTRSIDYLVINKESLADNVEVSEQEVSDYYDLNASQFLSPELISVNYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
                     ++ ++++A YE+NK +Y  PE R V  ++          + + D  +  L
Sbjct: 239 KAENIVVG-SVTEEDVKASYEQNKAQYVEPEKRRVSHILIDNSEDDDAAKAKVDALYAEL 297

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           ++G  F +LAE     +    +G    + +  + D +  D+ FSL  KGDF+ V+   FG
Sbjct: 298 QQGADFAELAESSSDDIVSAEMGGDLDWIERDVMDPAFEDAAFSLEAKGDFSEVVASEFG 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y I  +++I+P     F +VK D+  ++   +  +   +    +       +  D +   
Sbjct: 358 YHIIKLTDIQPQQVKPFDDVKADLRAELERAEKIDAFYDKQTEMGAIAFEIS--DRLDDA 415

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
            ++  +D+        +   + +        L      +D        + L D   + V+
Sbjct: 416 AEVAELDVQSTPLLALNALPEPLNTPAVITALTSVDLLEDKV--NSEVIELGDEHIVIVR 473

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           I E  PA  + L +V   +K      KT+E    KA  L  E  + GK+  DI    G +
Sbjct: 474 INEHQPASTKPLSDVSEQIKTRLVNDKTSELAKDKARSLFAEI-QAGKSLNDIATEQGLT 532

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF--KVTNSKV 581
           L   +Q+NR    +       +SQ F         +V    + NG + +V    V ++ V
Sbjct: 533 LRQESQLNRQ---SFAVSPAIVSQAFKMAHPADTAVVDVVDLNNGDAAIVALNSVADATV 589

Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                  +    +T           I  LK++    ++  ++++ 
Sbjct: 590 T-ADIDPQAKQSITMAQANKNYMVFIESLKAKA--ELNLPVVEQA 631


>gi|90579274|ref|ZP_01235084.1| putative peptidyl-prolyl cis-trans isomerase D [Vibrio angustum
           S14]
 gi|90440107|gb|EAS65288.1| putative peptidyl-prolyl cis-trans isomerase D [Vibrio angustum
           S14]
          Length = 630

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 121/635 (19%), Positives = 252/635 (39%), Gaps = 32/635 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E +R+ + +   KI L ++   F+  G+   L +         V  +++   +F  ++
Sbjct: 1   MMERLREGANSIWVKIILSLIIFSFVFAGVGSYL-AGGNEQVAAKVNDKEISQRAFEQAY 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + +   + Q++G   ++   + A        +L+ +V+   ++Q   ++GL     +V  
Sbjct: 60  QNQRNQMQQRLGDYFSTLMGDPAYVQQFRNSVLERMVNDELIEQRATELGLGVSDAQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D  F+++ +   L R GI+ +++ +   K + R   +    G     N 
Sbjct: 120 AIVAMPAFQ-VDGVFNNEQYNLTLRRAGISPEQFAESIRKDMLRQQFLSALEGSDFALNN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L++ ++   + R V  + LN          ++     ++EK K  +  P   ++SYI  
Sbjct: 179 ELNELRKLESQERVVRTLKLNLADFTDKVTVTDEEAKAYYEKNKTQFTRPAQVKVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKK 292
                   I+I++ E +A Y ++K KY + E   V  ++       ++ +A+     LK 
Sbjct: 239 SDKNLVNNIKITDKEAEAYYNEHKSKYSTAEKIQVSHILVKGDSDASKAKAEALLAELKA 298

Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  +A++             L  F K  + D +   + FSLAK GD + ++  SFGY
Sbjct: 299 GANFADVAKKSSDDTFSAKDGGKLDWFGKG-VMDPAFEKAAFSLAKPGDMSGLVKSSFGY 357

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRR 407
            I  +  I+      F +VK  I  +++  + +E+  +   +L E       S+D+ +  
Sbjct: 358 HIILLDGIEEPKVKPFADVKASIVAELQEQQVAEQFYKLQSKLAETAFESPDSLDDAAEA 417

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
            K   I    +         K V +    ++ L      DD ++ D  + +     + V+
Sbjct: 418 VKAKIIKTGFISL----QDEKGVLSDKKVQEALQSPEVHDDGMNSD-VIEIAPEHVVVVR 472

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + ++ P       +V   VK      K  ++ + KA+ ++    ++GK+  D+    G S
Sbjct: 473 VDDARPESVLPFTDVEAKVKTLLAQQKGEKQATEKADSIIAAL-RDGKS--DVVAKDGLS 529

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-----ENGLSYVVFKVTNSKVG 582
                 I R   +        ++     P +    + +      N     + KV N    
Sbjct: 530 FSGDQTITRSGPDANV---ARVAFTLPKPKDGKVSYGMTRDNKGNVEIIALDKVVNVAPS 586

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                 +F + +  M  +  L + +  L+    VT
Sbjct: 587 KDDVDTQFATQVENMFAQQDLSATLQTLRESAKVT 621


>gi|262276274|ref|ZP_06054083.1| peptidyl-prolyl cis-trans isomerase PpiD [Grimontia hollisae CIP
           101886]
 gi|262220082|gb|EEY71398.1| peptidyl-prolyl cis-trans isomerase PpiD [Grimontia hollisae CIP
           101886]
          Length = 630

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 133/631 (21%), Positives = 248/631 (39%), Gaps = 25/631 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E +R+   +   KI L ++   F+  G+   L S S      +VG +++  + F  ++
Sbjct: 1   MMERLREGVNSIAVKIILGLIIFSFVFAGVGGYLASGS-VQPAATVGNEEISRNQFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E  ++  + G   +   S+          +L+ +V+ + LDQ  +++GL     ++  
Sbjct: 60  QNERALMQAQAGDFFSQLLSDPNYLAQFRFNVLERMVNQSLLDQEAQNLGLRVSDDQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F G    F +D++++ L R G+   ++ D+  + L R  +V   +        
Sbjct: 120 TIREMPAFRGATGLFDNDLYLASLRRNGLTPDQFADYVRQDLVREQLVNALISSEFALKG 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L+   +   + R+V  + L        AD +    T ++E+    +  PE  +I+Y+  
Sbjct: 180 ELEALHKLEGQTRTVRTLTLPLADFAEKADITAEQKTAYYEQNPAEFVRPEQFKIAYVEL 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKK 292
                     ++ DE +A YE NK  Y + E R V  ++        +++A+     L  
Sbjct: 240 SGEGIADVAGVTEDEAKAYYEANKASYGTAEQRKVSHIMIQGDDNAAKEKAEAVLSELNA 299

Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F +LA+ +            L  F K  + D +  ++ F+L  KGD T V+   FG+
Sbjct: 300 GADFAELAKTRSDDTFSAEQGGQLDWFDKG-VMDPAFEEAAFALNNKGDITGVVQSDFGF 358

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRR 407
            I  + ++KPS    F +V+ DI  Q++   A EK       L E+   +  ++++ +  
Sbjct: 359 HIIKLDDVKPSDAKPFAQVRDDIMAQLKQQHAVEKFYALSNELAEKAFEMPDNLEDAANA 418

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
                     V         + V A P   Q L     +DD L+    + +     + V+
Sbjct: 419 VNAKVERTAFVSLQEL----EGVLANPQVVQALQLPEVRDDGLN-SELIEIAPEHVVVVR 473

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + E  P      +EV   V +  K  K  E   + AN LV E S+         K  G +
Sbjct: 474 VDEVRPETVLPFDEVEAQVTEQLKRQKGEEAAEALANTLVAELSQGN---DAGLKASGYA 530

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF--KVTNSKVGPVQ 585
                ++ R+  E +           +            +G   VV    V       + 
Sbjct: 531 FGDETELTRVSPEREVVDLAFTMAAPADGKAQYGMTRAVSGDVLVVALDAVKEPATESIS 590

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
              +    + +      L+SVIA LK   +V
Sbjct: 591 LDSQLAERVIRATANLDLESVIAQLKENTNV 621


>gi|253990887|ref|YP_003042243.1| peptidyl-prolyl cis-trans isomerase [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782337|emb|CAQ85501.1| Peptidyl-prolyl isomerase [Photorhabdus asymbiotica]
          Length = 623

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 119/635 (18%), Positives = 261/635 (41%), Gaps = 29/635 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI L ++ + F++ G+   L S + S     V  Q +  +    ++
Sbjct: 1   MMDNLRTAANSPVLKIVLALIILSFVLTGVGGYLTSGTDS-YAAEVNGQTISRAQLEQAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +QE  M+ +++G   +   S       +  ++L+ L++ A +DQ+ +++GL A   +V  
Sbjct: 60  QQERNMLQEQLGDKFSVLASNEQSMKQIRSQVLERLINNALIDQYSQELGLSASDEQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     F   + KF ++ ++  L R  ++     +   + L    ++  F G       
Sbjct: 120 AIRNISYFQ-INGKFDNNKYLDFLNRSNLSPDILAEQTRQNLINQQLIMAFSGSEIVLPS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +      + + R+V    L  + V    + ++  L  ++   K+++ APE  +ISYI  
Sbjct: 179 EVKLNAELFLQQRAVRLATLELKKVHVRQEVTDKDLQDYYNVNKNSFIAPEEVKISYIRM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D  ++  K+ +++ ++ + YE N ++Y  PE +    +    + EA      L KG  F 
Sbjct: 239 DAADEMDKVSVTSVDVDSYYEHNLKRYTQPEQKKYSLVQLATEVEAKIVLDELNKGADFG 298

Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +LA E+        +   +G   ++ +P+        +L +KG  + VI    G+ I H+
Sbjct: 299 KLAAEKSTDKFSAKNKGEIGWMEEDSLPE---EMKKANLKEKGQISSVIKVPNGFAIFHL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            ++KP  T    EV+ +I   ++  KA +      +++ +  A  +  + ++  E++   
Sbjct: 356 DDVKPQITKPLSEVRSEIEKTIKQEKAVDAFYALQQKVSD--AATSDNESLTSAEEVSGT 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
            +    +  ++    E+   P    +    +     P   +  V   +G   +V ++   
Sbjct: 414 KIVTTGWFDRNNVPAEINFGPVIHAIFEGNLVDVQGPTGANSDVISVEGDRAFVLRVDNY 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   +  E+V   V +  K  K  +++  ++ +L+    KEGK    + K+ G     +
Sbjct: 474 KPEIVQPFEQVKKQVTELVKRQKAEKQLQVESERLLAAL-KEGKA-EQVLKDAGIQFGES 531

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCF----PIENGLSYVVFKVTNSKVG--PVQ 585
             I R    N       I  VF+ P              +    V+ ++     G    +
Sbjct: 532 QIIQRTSQNN-----ALIDAVFALPQPKEGKAEYGSVKNSLDDIVLIQLDKVTPGVISEE 586

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           +           +   +L+S++  L+ +  V    
Sbjct: 587 QIKGMADGYQNEIGNAMLESLLINLREKAKVKFGH 621


>gi|291616553|ref|YP_003519295.1| PpiD [Pantoea ananatis LMG 20103]
 gi|291151583|gb|ADD76167.1| PpiD [Pantoea ananatis LMG 20103]
          Length = 646

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 115/639 (17%), Positives = 260/639 (40%), Gaps = 33/639 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R AS   V KI L ++ + F++ G+ + L     +     V  Q++  +    ++
Sbjct: 24  MMDNLRAASNHVVLKIILGLIILSFVLTGVGNYLIG-GNNDYAAKVNGQEISRAQLDQAF 82

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E     Q +G   +           + ++ L  L+  A LD +I+D+ +     +V  
Sbjct: 83  NSERNRQQQMLGDQFSQLAGNDGYMQQMRQQALSQLIDQALLDSYIKDLHIAISDDQVKQ 142

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     F   + KF +  + + +   G    +Y +   K L+   ++            
Sbjct: 143 AIFNQAAFQ-TNGKFDNAKYNAMIGNMGFTADQYAEALRKQLATQQLINAIANTDFMLKN 201

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              +      + R +    L+   + A    ++  + Q+++++K+++ APE  R+SYI  
Sbjct: 202 ETSKLVDLVAQKRDIQTATLDVNALAAKQTVNDDEINQYYQQHKNSFMAPEQFRVSYIKL 261

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++    S+ ++QA Y+++K  Y  P+      +    + +A+     LK G  F 
Sbjct: 262 DAAGMQENA--SDADIQAWYDQHKADYTQPQRDRYSVIQTKTEADANAILAQLKSGADFA 319

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +LA+ +            +G       PD         L +KG  + VI  S G++IA +
Sbjct: 320 ELAKTKSIDPISARKGGDMGWLEPSTTPD---ELKNAGLKEKGQLSGVIKSSVGFLIARL 376

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I P       +V+ ++A++++  KA +   +  +++ E  A     + ++  E+   +
Sbjct: 377 DDIIPEQVKPLADVRSEVADEVKQEKAVDAFYKLQQKVSE--AASNDNESLAGAEQASGM 434

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +  +D   K++     K+ +    + G++     +  +   DG   +V +I E 
Sbjct: 435 KATETGWFSRDDVPKDLDFDAVKQAIFNGGLVGQNGAPGNNSDIISVDGDRAFVLRISEH 494

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P     LE+V   +    K  K  ++  ++A++L+ +  K GK  +D+ K  G +L  +
Sbjct: 495 KPEAVEPLEKVKAQIIDTLKHDKATQQAKAQADKLLADL-KAGK--QDVLKAAGLTLSAS 551

Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQ 585
             ++R   +            F+   P +    + +   +  + V+  V     G  P  
Sbjct: 552 KTVDRNTQD------PVAQAAFNLPQPEDNKPSWGVSEDMQGNVVLVAVDKVSTGTMPQA 605

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           + ++ +  +TQ   +   ++++  L+ +  +       Q
Sbjct: 606 QINEMVKGVTQNNAQLAFEALLQNLRKEAKIKYGAAAQQ 644


>gi|37527725|ref|NP_931070.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787161|emb|CAE16237.1| Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 623

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 120/636 (18%), Positives = 261/636 (41%), Gaps = 29/636 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI L ++ + F++ G+   L S +GS     V  Q +  +    ++
Sbjct: 1   MMDNLRTAANSPVLKIVLALIILSFVLTGVGGYLTSGAGS-YAAEVNGQAISRAQLEQAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +QE   + +++G   +   S+      +  + LD L++ A +DQ+  ++GL A   +V  
Sbjct: 60  QQERNALQEQLGDKFSVLASDEQSMKQIRNQALDRLINNALIDQYSRELGLSASDEQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +  F   D KF ++ ++  L R  ++   + +   + L    ++  F G       
Sbjct: 120 SIRNTSYFQ-TDGKFDNNKYLELLNRFNMSPDIFAEQTRQNLVNQQLIMAFSGSEIALPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +        + R+     L  + + A  + ++  L  ++   K ++ A E  +ISYI  
Sbjct: 179 EVKLNAELLLQQRTARIATLELKKIQAQQEVTDKDLQDYYNLNKSSFIASEEVKISYIKM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D  ++  K+  ++ ++ A YE N ++Y  PE +    +    + EA   F  L KG  F 
Sbjct: 239 DAVDEMNKVSATSADVDAYYEHNLKRYTQPEQKKYSLIQLATESEARTVFDELNKGADFG 298

Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +LA ++        +   +G   ++ +P+        +L +KG  + VI    G+ I H+
Sbjct: 299 KLATKKSTDKFSAKNHGEIGWMEEDALPE---ELKQANLKEKGQISSVIKVPNGFAIFHL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            ++KP       EV+ +I   ++  KA +      +++ +  A  +  + ++  E++  I
Sbjct: 356 DDVKPQIIKPLSEVRSEIEKMVKQEKAVDAFYALQQKVSD--AATSDNESLAAAEEVSGI 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
            +   D+  ++    E+        +    +     P   +  V   +G   +V ++   
Sbjct: 414 KVVTTDWFDRNSVPAEINFGAVIHAIFEGNLVDGQGPTGTNSDVISVEGDRAFVLRVDNY 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   +  E+V   V +  K  K  +++  ++ +L+    KEGK      K+ G     +
Sbjct: 474 KPETVQPFEKVKDQVTELVKRQKAEKQLQVESEKLLTAL-KEGKG-EQALKDAGIQFGES 531

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCF----PIENGLSYVVFKVTNSKVG--PVQ 585
             I R   +N   G      VF+ P+             +    V+ ++     G    +
Sbjct: 532 QVIQRTSQDNVLVG-----AVFALPLPKEGKAEYGLTKNSLDDVVLIQLDKVTPGVVSEE 586

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
           +           M   +L+S++  L+ +  + +   
Sbjct: 587 QIKSMTDGYQSEMGNAMLESLLISLREKAKIKLGHT 622


>gi|119774365|ref|YP_927105.1| peptidyl-prolyl cis-trans isomerase D [Shewanella amazonensis SB2B]
 gi|119766865|gb|ABL99435.1| peptidyl-prolyl cis-trans isomerase D [Shewanella amazonensis SB2B]
          Length = 615

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 116/633 (18%), Positives = 257/633 (40%), Gaps = 38/633 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ ++  +AK  LV++ + F   G+S  L S S      +V  +++P S+   ++
Sbjct: 1   MLEKIREGAQGTIAKSILVLVILSFAFTGVSSYLGS-STEPAAATVNGEEIPVSALEQAF 59

Query: 61  KQELGMISQKIGFVVNSERARSV---GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A       + + +L+ +++   LDQ   ++GL     ++  
Sbjct: 60  QNEKARMEQQLGEMFQTLAADDNYLRSIRQGVLERMIADKLLDQTASEMGLRISDEQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  +  KF ++ +++ L + G     + D     ++R  +V   +G       
Sbjct: 120 AIMEEPAFQTE-GKFDNERYLAILRQLGYQTNSFRDMMRVDMTRRQLVNALIGSEFVLPS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R + Y+V+ ++   A    ++     +++   D +  PE   + Y+  
Sbjct: 179 ESKAVAELQGQTRDLRYLVVESQPFEAGITVADDEAKSFYDANPDQFIKPEQVSLEYLTL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
                  ++ +++++ +A Y+++  +Y +PE R    ++          + +AD  +  L
Sbjct: 239 SAKSLADEVSVTDEQAKAYYDEHMSQYKTPEKRLAAHILVNLGDDEAAAKTKADAIYAKL 298

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           + G  F +LA+   +      LG    + ++ + D +  +++F L K   ++ V+   +G
Sbjct: 299 QAGADFAELAKTDSEDTFSGELGGQLDWFEQGVMDPAFDEALFGLEKD-QYSAVVKTDYG 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           + I  + +++     SF EVK  I  Q++   A +K     ++L +        D ++  
Sbjct: 358 FHIIKLLDVQGGAQASFDEVKDRIFAQIKEKDALDKFYSLQQKLADTSYEVP--DSLTEA 415

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMW 465
            K   +++       +++   E++       L+   F +   LS      V L D     
Sbjct: 416 AKATGLEVKSTGLFAREMPPAEIS----NPALIKAAFSEQVLLSGMNSDVVDLGDNQVAV 471

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V++KE   A     +EV   +       K  +    +A +L+ ++ K G+      K   
Sbjct: 472 VRVKEHKQAGTLPFDEVKAGIVARLTQDKANDAAKLQAQELLAKF-KAGEALELTAKAK- 529

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF-KVTNSKVGPV 584
                   + R D E        +++ F   V       + +G + VV  KV  ++    
Sbjct: 530 --------VARFDRE---LDPSIVNKGFQLAVGGADTISMASGYALVVLDKVNPAEGVED 578

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                    L+    +     VI  LK++  ++
Sbjct: 579 ALVQALAQRLSNQYTELAYRGVIDSLKAKAEIS 611


>gi|283479299|emb|CAY75215.1| putative protease maturation protein [Erwinia pyrifoliae DSM 12163]
          Length = 623

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 119/632 (18%), Positives = 257/632 (40%), Gaps = 32/632 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R AS   V K+ L ++ + F++ G+   L   SG      V  Q++  +    ++
Sbjct: 1   MMDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSG-DYAAKVNGQEIGRAQLERAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E     Q +G   +           + ++ L  L+    L Q+ ++IGL     ++  
Sbjct: 60  SSERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +  ++S +   G    +Y +   K L+   ++G   G       
Sbjct: 120 AIFTQPAFQ-TDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTGTDFVLGN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D       + R V  + +N   + A  + +   +  ++++++ +  +PE  R+SYI  
Sbjct: 179 ETDSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSPEQFRVSYIKM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D     +   +S  ++Q+ Y+++++ Y  P+      +    + EA     +L KG  F 
Sbjct: 239 DASAMLQP--VSESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALNKGGSFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +LA+E+        +   +G    E  PD        +L +KG  + VI  S G+++A +
Sbjct: 297 KLAKEKSADPISARNGGDMGWLEPETTPD---ELKNAALKEKGQLSDVITSSVGFIVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            + +P    +  EV  +IA +++  KA     +  +++ +  A     + ++  E++  +
Sbjct: 354 DDTQPEKVKALSEVHDEIARKLKQEKAVVAFYKLQQKVSD--AASNDNESLASAEQVAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                D+  +D    E+     ++ +    + G++     +  V   DG   +V +I+E 
Sbjct: 412 KAVDTDWFDRDNLPAELKFKAVQDAIFNGALLGENGAPGSNSEVITVDGDRAFVLRIREH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L++V   +    K  K  ++  ++A++L+ E  K GK   D  K         
Sbjct: 472 KPEAVKALKDVAAQITDTLKQQKGLQQAKAQADKLLAEL-KAGKG-DDALKAANLRFAAQ 529

Query: 532 NQINRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQ 585
             + R   +            FS   P +    + I      + V+  +   + G  P  
Sbjct: 530 QTLMRTGQD------ALTQAAFSLPLPPQGKPSYGISEDAQGNVVLIALDKVQKGEMPEA 583

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +K   +  +TQ   +    ++++ L+ +  + 
Sbjct: 584 QKQALVQGITQNNAQLAFAAMLSNLRKEAKIK 615


>gi|332532266|ref|ZP_08408147.1| peptidyl-prolyl cis-trans isomerase PpiD [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038364|gb|EGI74809.1| peptidyl-prolyl cis-trans isomerase PpiD [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 633

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 128/633 (20%), Positives = 258/633 (40%), Gaps = 31/633 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  VAKI L  + + F + G+   L   +    V  V   K+  + F  ++
Sbjct: 1   MLEKIREGSQGPVAKIILGAVILSFALAGIGSYL-GQTTEQPVAEVNGIKISQTDFNRAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q+ G       ++      + + ++D LV      Q   D+GL      V  
Sbjct: 60  QNERSRLEQQFGEYFTQIAADPNYMAQIRQGVVDRLVQQELQSQLAADLGLRVSDESVRK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F     KF++D ++  + +       + ++  K ++R+ VV    G       
Sbjct: 120 TILELPYFQ-IGEKFNNDRYLQVIRQMNFQPDAFREYLRKDMTRSQVVSAVAGTDFALES 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L  A     + RS+DY+V+N   + A  + S+  ++ +++     + +PE   +SYI  
Sbjct: 179 ELKSAIALQQQTRSIDYVVVNKEALAANVEVSDQEVSDYYDLNASQFLSPELISVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
              +      +++D+++A YE+NK +Y  PE R V  ++          +++A+     L
Sbjct: 239 KAADI-NVESVTDDDVKAYYEQNKAQYVEPEKRRVSHILIDNSEDDDAAKEKANALHAQL 297

Query: 291 KKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           ++G  F +LA+     +    +G    + +  + D +  D+ F+L  KGD + V+   FG
Sbjct: 298 EQGADFAELAQSSSDDIVSGEMGGDLEWIERDVMDPAFEDAAFALENKGDISDVVTSEFG 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y I  +++I+P    ++ +VK D+  ++   +  +   E    +       +  D +   
Sbjct: 358 YHIIKLTDIQPQQVKAYDDVKADLRAELEQAEKIDAFYEKQTEMGALAFEIS--DRLDDA 415

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
            ++  +++        +   + + +      L      +D        + L D   + V+
Sbjct: 416 AEVAEVEVKSTPLLALNALPEPLNSPAVVTALTSVDLLEDKV--NSEVIELGDEHAIIVR 473

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           I E   A  + L+EV  ++K      K++E    KA  L  E  + GK+  D+      +
Sbjct: 474 INEHKAAATKPLDEVSEEIKARLVNEKSSELAKEKARSLFAE-VQAGKSLNDVANEQSLT 532

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF--KVTNSKV 581
           L    ++ R    +       ++Q F         +V    + NG + +V    VT+++V
Sbjct: 533 LRQEAKLTRQ---SYTVSPAIVTQAFKMAHPADSAVVDLVNLNNGDAAIVALKSVTDAQV 589

Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
                  +    +T           I  LK+  
Sbjct: 590 A-ANIDPQAKQSITMAQANKNYMVFIEALKANA 621


>gi|163793237|ref|ZP_02187213.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium
           BAL199]
 gi|159181883|gb|EDP66395.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium
           BAL199]
          Length = 626

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 129/637 (20%), Positives = 269/637 (42%), Gaps = 17/637 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQK-VPFSSFINS 59
           ML+ IR    +   KI  V+L V F IWG+ D  F        +SVG +           
Sbjct: 1   MLQFIRSKVTSIFVKILFVMLIVSFAIWGIGDVFFGNPAGKVAISVGDETRFTTQEVAGE 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           ++     I    G  +  E+A  +G+  ++++N+V+   +      + L     RV   +
Sbjct: 61  FETARRRI----GVPLTVEQAIQLGMLDQVMNNMVTEGLMIAATRSLDLSVGTDRVAEFV 116

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
                F  +  +F    + + LA  G +E+E+I    +  +R  ++             +
Sbjct: 117 RS--RFTDQTGQFDRARYQTTLANNGWSEEEFILRLRQDFARRQLIDALTAADAAPEAAV 174

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           D+   +  E R  + + +    VP    P +A L  +FE  K  Y  PEY+ I++     
Sbjct: 175 DRVFAYRQERRIAEVVTIPAAAVPEPTAPDDAALNSYFEASKSGYEEPEYRSIAWAQVSP 234

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               K ++I   +++A Y++  ++   PE R V+Q++F  +  +  A   +  G+ F+ +
Sbjct: 235 AAVAKTLDIPEGDVRAAYDERADQLAKPERREVQQILFETEDASKAAHARIAGGEDFVAV 294

Query: 300 AEE-QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           A++  G   + + LG+ +++ +P    AD++F+LA+    +  +   FG+ +  V +I+P
Sbjct: 295 AKDTTGADEAALDLGALARDGLP-TGTADAVFALAQN-AVSEPVKSGFGWHLFRVRSIQP 352

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             TV+++E K  I +++   +A + V E   +LE+ LA G +++E ++  ++  + +  +
Sbjct: 353 GTTVTYEEAKGRIRDELAHDRALDVVYETANKLEDALAGGATLEEAAKSLELPVLRITGL 412

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G    G++   +P     L   F             L DG +  +++ E    R   
Sbjct: 413 SKTGALKSGEKAVDLPGGR-FLELAFDTPKDQQSGLGEGL-DGQFFVLRVDEITAPRVPS 470

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
           L+EV   V  DWK+ +  E    +A+ L  E  + G +  D+    G        + R  
Sbjct: 471 LDEVRDRVLADWKSERRMEIAEERADSL-AEKVRGGGSLADLAAADGMPTAELPALTRST 529

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYL 594
                   + +     G  ++       +     V ++   +          +    + +
Sbjct: 530 RNAPQGFPNTLPATLFGIKDVGGVAVTADDTQAAVVRLVRIEPADATAQANVRKAIATQM 589

Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
            Q    DL++ ++A L++++ V  + + + R  +  +
Sbjct: 590 QQAAESDLIELLLADLRNRFKVVENKSSVLRLYETAQ 626


>gi|89073234|ref|ZP_01159764.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium sp.
           SKA34]
 gi|89050944|gb|EAR56408.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium sp.
           SKA34]
          Length = 630

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 118/635 (18%), Positives = 250/635 (39%), Gaps = 32/635 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E +R+ + +   KI L ++   F+  G+   L +         V  +++   +F  ++
Sbjct: 1   MMERLREGANSIWVKIILSLIIFSFVFAGVGSYL-AGGNEQVAAKVNDKEISQRAFEQAY 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + +   + Q++G   +    + A        +L+ +V+   ++Q   ++GL     +V  
Sbjct: 60  QNQRNQMQQRLGDYFSKLMGDPAYVQQFRNSVLERMVNDELIEQRATELGLGVSDAQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D  F+++ +   L R G + +++ +   K + R   +    G     N 
Sbjct: 120 AIVAMPAFQ-VDGVFNNEQYNLTLRRAGFSPEQFAESIRKDMLRQQFLSALEGSDFALNN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L++ ++   + R V  + LN          ++     +++K K  +  P   ++SYI  
Sbjct: 179 ELNELRKLESQERVVRTLKLNLADFTDKVTVTDKEAKAYYDKNKTQFTRPAQVKVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK 292
                   I+I++ E +A Y ++K KY + E   V  ++       ++ +A+     LK 
Sbjct: 239 SDKNLVNNIKITDKETEAYYNEHKSKYSTAEKIQVSHILVKGDSDTSKAKAEALLAELKG 298

Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  +A++             L  F K  + D +  ++ FSLAK GD + ++  SFGY
Sbjct: 299 GANFADVAKKSSDDTFSAKDGGKLDWFGKG-VMDPAFEEAAFSLAKPGDMSGLVKSSFGY 357

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRR 407
            I  +  I+      F +VK  I  +++  + +E+  +   +L E       S+D+ +  
Sbjct: 358 HIILLDGIEEPKVKPFADVKASIVAELQEQQVAEQFYKLQSKLAETAFESPDSLDDAAEA 417

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
            K   I    +         K V +    ++ L      DD ++ D  + +     + V+
Sbjct: 418 VKAKIIKTGFISL----QDEKGVLSDKKVQEALQSPEVHDDGMNSD-VIEIAPEHVVVVR 472

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + ++         +V   VK      K  ++ + KA+ ++    ++GK+  D+    G S
Sbjct: 473 VDDARSESVLPFTDVEAKVKTLLAQQKGEKQATEKADSIIAAL-RDGKS--DVIAKDGLS 529

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE-----NGLSYVVFKVTNSKVG 582
                 I R   +        ++     P +    + +      N     + KV N    
Sbjct: 530 FSGDQTITRSGPDANV---ARVAFTLPKPKDGKVSYGMSRDNKGNVEIIALDKVVNVTTS 586

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                 +F + +  M  +  L + +  L+    VT
Sbjct: 587 KSDVDTQFATQVENMFAQQDLSATLQTLRESAKVT 621


>gi|332305578|ref|YP_004433429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172907|gb|AEE22161.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 627

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 116/635 (18%), Positives = 248/635 (39%), Gaps = 26/635 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ ++   A   L ++ + F+  G+   + S S  +    V  + +  +    ++
Sbjct: 1   MLERIREGTQGTWAMAILGLVILSFVFAGVGSYINS-SADTAAAKVNDETISQADLERAY 59

Query: 61  KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E G +  + G       ++ A      + +LD L+    ++Q   D+GL     ++  
Sbjct: 60  QNERGRMESQYGEAFAALTADSAYLQQFRQGVLDRLIGDKLIEQAAVDLGLRVSDAQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF ++ + + L + G    E+ D+    ++R  +    +G       
Sbjct: 120 AIVAMPEFQF-DGKFDNERYSAVLRQAGFQPNEFRDYMRVDMTRRQLSNALLGSEFTLLE 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              QA +   + R   Y+ +           S + +  +++     +   +   ++Y+  
Sbjct: 179 ETTQAYKLQQQTRDARYLTVPADMFKGDVTVSQSDVENYYQANITQFDTQQQVSLAYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
            V +    IE+S DE +  YE+N + + + E R    ++          +++A++    +
Sbjct: 239 SVDDLLAGIEVSEDEAEQYYEQNIQDFRTQEERRASHILIEFGDDQQKAEQQAEDILAKI 298

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G+ F +LAE          +   L  FS   + D +  D+ F+L   GD + V+   F
Sbjct: 299 NNGEDFAELAETFSSDTFSAENGGDLDWFSMG-MMDPAFEDAAFALQNVGDVSDVVESEF 357

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEIS 405
           G+ I  ++++KP  T  F +VK+D+  +++  +A E+      R+ E       ++DE++
Sbjct: 358 GFHIIKLTDVKPEETSPFADVKEDVIAKLKAERAEEEFYAKQLRMAEVAFETPDTLDEVA 417

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
               I  +D+       +D   + V       Q        D        + L D   M+
Sbjct: 418 A---IAEVDVKTTVMFSQDSAPQAVNYPNVVSQAFSDELINDQV--NSDVIELEDNHVMF 472

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           +++ +    R + L+EV  ++       +  +     A  ++ +  +  +N  D  +  G
Sbjct: 473 IRVADYEAQRTKSLDEVSVEINDILLAEQAQQAAKEWAETVLSDI-QSQQNVSDKLQTKG 531

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV--FKVTNSKVGP 583
                 N + R  ++        + ++  G     +   + NG   +V   +V      P
Sbjct: 532 IEWQEQNAVTRNASQVSPAVVTALFKLTDGEESNGQVVELFNGDVALVQLLEVNEGADLP 591

Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
             +     + LT M  +      I  L+ Q  V +
Sbjct: 592 SSDAAALQNRLTTMRAQFTYSEFINALREQADVEI 626


>gi|109899437|ref|YP_662692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           atlantica T6c]
 gi|109701718|gb|ABG41638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           atlantica T6c]
          Length = 627

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 120/638 (18%), Positives = 254/638 (39%), Gaps = 32/638 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ ++   A   L ++ + F+  G+   + S S  +    V    +  +    ++
Sbjct: 1   MLERIREGTQGTWAMAILGLVILSFVFAGVGSYINS-SAETAAAKVNDDTISQADLERAY 59

Query: 61  KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E G +  + G       ++ A      + +LD L+    L+Q   D+GL     ++  
Sbjct: 60  QNERGRMESQYGEAFAALTADSAYLQQFRQGVLDRLIGDKLLEQAAIDMGLRVSDAQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF ++ + + L + G    E+ D+    ++R  +    +G       
Sbjct: 120 AIVAMPEFQF-DGKFDNERYTAVLRQAGFQPNEFRDYMRVDMTRRQLSNALLGSEFTLAA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              QA +   + R   Y+ +         + S+  +  +++     +   +   ++Y+  
Sbjct: 179 ETTQAYKLQQQTRDARYLTIPAESFKDGINVSDDDVENYYQANITQFDTEQKVSLAYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290
            V +    I +S+DE    YE+N + + + E R    ++          +++A++    +
Sbjct: 239 SVDDLLTDIVVSDDEALQYYEQNIQDFRTQEERRASHILIEFGDDEQGARQQAEDVLSKI 298

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F +LA+E         +   L  FS   + D +  ++ ++LA  GD + V+   F
Sbjct: 299 NDGGDFAELAKEYSSDTFSAENGGDLDWFSAG-MMDPAFEEATYALANVGDVSSVVESEF 357

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEIS 405
           GY I  +++IKP  T  F +VK+D+  +++  +A E+      R+ E       ++DE++
Sbjct: 358 GYHIIKLTDIKPEETSPFTDVKEDVIAKLKSERAEEEFYAKQLRMAEVAFETPDTLDEVA 417

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
               I  +D+       +D     V   P      F     +D ++ D  + L D   M+
Sbjct: 418 A---IAEVDVNTTVMFSQDSVPAAVN-YPNVVAQAFSDELINDQVNSD-VIELGDNHVMF 472

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V++      R + LEEV  ++       +  +     A  L+++   E    +D+ ++L 
Sbjct: 473 VRVANYEAQRTKALEEVSPEINDILLAEQAQQAAKEWAETLLVDIKAE----QDVSESLQ 528

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVV--FKVTNSK 580
           A  +   +   +           ++ +F    +     +   + NG   +V   KV +  
Sbjct: 529 AKAVEWQEQEAVARSGSQISPALVTALFKLTEDKESNAQVVELFNGDVGLVQLMKVNDGA 588

Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
             P  +     + L+ M  +      +  L+ Q  V +
Sbjct: 589 ELPSTDVAALQNRLSTMRAQFTYGEFVNALREQADVEI 626


>gi|157369342|ref|YP_001477331.1| peptidyl-prolyl cis-trans isomerase D [Serratia proteamaculans 568]
 gi|157321106|gb|ABV40203.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Serratia
           proteamaculans 568]
          Length = 627

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 124/637 (19%), Positives = 263/637 (41%), Gaps = 24/637 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + FL+ G+       S       V  Q +  +    ++
Sbjct: 1   MMDNLRAAANHVVLKIILGLIILSFLLTGVVSY--QGSAGDYAAKVNGQVIERAQLEQAF 58

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G   ++          +  + L  L+    LDQ+ + +GL     +V  
Sbjct: 59  QSERSRMQQQLGDQFSALAGNEGYMQQMRHQALSQLIDNMLLDQYAKKLGLSVSDDQVKE 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   + +F +  ++  ++R G     +     + L    V+  F G       
Sbjct: 119 AIRKAPYFQ-TNGQFDNAKYLDLISRMGYTADNFAQSMRQQLVNQQVIQAFGGSGFILPA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R V    L+ + + A    ++  L  ++ + K+++ APE  ++SYI  
Sbjct: 178 EAQDMTALVLQQRDVRLATLDLKALQAKQTVTDDELKDYYSQNKNSFIAPEQVKVSYIPM 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + K+ +++ ++ A Y+++K  Y  PE +    +    + EA+     LKKG  F 
Sbjct: 238 DAAAMQDKVTVADADISAYYDQHKSSYGQPERKNYSVIQLKTEAEANAVLDELKKGGDFA 297

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            LA+++   +     G       PD +  +    +L +KG  + V+  S GY++  +++I
Sbjct: 298 TLAKDKSTDIISRRTGGELGWLEPDTTADELKQANLTEKGQLSGVVKSSVGYLVIRLNDI 357

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
            P       EV+  IA Q++  KA +      +++ E  A  +  + ++  E+   +   
Sbjct: 358 APEKVKPLSEVRDAIAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGVKAA 415

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
             D+  +D     +   P  + +    + G+      +  V   DG     +++    P 
Sbjct: 416 QTDWFTRDNIPAALNFKPVIQSIFDGSLIGEGGSPGSNSDVITVDGDRAFVIRVSGHKPE 475

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
                ++V   V +  K  K  +E   +  +L++E  K+GK   +  K  G S  +  ++
Sbjct: 476 GIEPFDQVKDRVAELVKRNKAEQEAKLQGEKLLVEL-KQGKG-DEAMKAAGLSFGSVQKM 533

Query: 535 NRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEKD 588
            R   +++      +  VF+   P E    + +      + V+  +   K G  P +E  
Sbjct: 534 ARAPEDSQL-----VQSVFALPHPQEGKPVYGMSQDRQDNVVLIALDAVKPGTLPAEEMK 588

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            F+S + +       DS++A L+ +  +T+     Q+
Sbjct: 589 TFVSKMEEGATGVSFDSLLASLRKEAKITMGAAEQQQ 625


>gi|315127185|ref|YP_004069188.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D)
           [Pseudoalteromonas sp. SM9913]
 gi|315015699|gb|ADT69037.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D)
           [Pseudoalteromonas sp. SM9913]
          Length = 633

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 131/642 (20%), Positives = 260/642 (40%), Gaps = 33/642 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  VAK+ L  + + F + G+   L   +    V  V   K+  + F  ++
Sbjct: 1   MLEKIREGSQGPVAKVILGAVILSFALAGIGSYL-GQTTEQPVAEVNGIKISQTEFSRAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q+ G       ++      + + ++D LV      Q   ++GL      +  
Sbjct: 60  QNERSRLEQQFGEYFTQIAADPTYMAQIRQGVIDRLVQQELQSQLATELGLRVSDESIRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D +F++D ++  + +       + ++    ++R+ +V    G       
Sbjct: 120 TILELPYFKIGD-QFNNDRYLQVIRQMNFQPDSFREYLRDDMTRSQLVSAVAGTDFALQN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L  A     + RS+DY+V++ + + A  D ++  +  ++E     + +PE   ++YI  
Sbjct: 179 ELKSAIALQQQTRSIDYLVIDKQAMQADVDVTDQEVADYYELNAGQFLSPELISVNYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
           D  +      +S D+++A YE++K +Y  PE R V  ++          + +A+     L
Sbjct: 239 DADDI-DVASVSEDDVKAYYEQSKAQYVEPEKRRVSHILIDNSEDDDAAKAKAESLLAQL 297

Query: 291 KKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             G  F QLAE     +    +G    + +  + + +  D+ F+L  KGD++ V+   FG
Sbjct: 298 NAGADFAQLAESSSDDIVSAEMGGDLEWIERDVMEPAFEDAAFALQNKGDYSDVVASEFG 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406
           Y I  +++I+      +  VK D+  ++   +  +   E    +          +D+ + 
Sbjct: 358 YHIIKLTDIQSQQVKPYDAVKADLRAELEQAEKVDAFYEKQTEMGALAFEISDRLDDAAE 417

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
              +     PL+  +       E    P     L  V   +D ++    + L +   + V
Sbjct: 418 VAGVEVQSTPLLALSAL----PEPLNNPAVITALSSVELLEDKVN-SEVIELGNEHVIVV 472

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++ E  PA  + L EV   +K   +  K ++    KA  L  +  K+GK+  D+      
Sbjct: 473 RVNEHQPAATKALSEVSEQIKTRLENEKASDLAKEKARTLFAQI-KDGKSLNDVAAEQSL 531

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF--KVTNSK 580
           S+   +Q+ R   E+       ++QVF         +     + NG + +V    VT++ 
Sbjct: 532 SVRQESQLTR---ESFAVSPAIVTQVFKMAHPRDGAVYDVVNLNNGDAAIVALNSVTDAP 588

Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
           V    E  +    +T    +      I  LK Q  + V    
Sbjct: 589 VSDSIE-PQMKQNITMAQAQKNYTVFIESLKQQAELNVPKAA 629


>gi|270263574|ref|ZP_06191843.1| putative protease maturation protein [Serratia odorifera 4Rx13]
 gi|270042458|gb|EFA15553.1| putative protease maturation protein [Serratia odorifera 4Rx13]
          Length = 627

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 120/640 (18%), Positives = 258/640 (40%), Gaps = 30/640 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + FL+ G+       S       V  Q +  +    ++
Sbjct: 1   MMDNLRAAANHVVLKIILGLIILSFLLTGVVSY--QGSAGDYAAKVNGQVIERAQLEQAF 58

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G   ++          +  + L  L+    LDQ+ + +GL     +V  
Sbjct: 59  QSERSRMQQQLGDQFSALAGNEGYMQQMRHQALSQLIDNMLLDQYAKKLGLSVSDDQVKD 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   + +F +  ++  ++R G     +     + L    V+  F         
Sbjct: 119 AIRKAPYFQ-TNGQFDNAKYLDLISRMGYTADNFAQSMRQQLVNQQVIQAFGQSGFVLPS 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R+V    L+ + + A    ++  L  ++ + K+++ APE  ++SYI  
Sbjct: 178 ESQGMAALVLQERNVRLATLDLKALQAKQTVTDDELKDYYSQNKNSFIAPEQVKVSYIPL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + K+ +++ ++ A Y+++K  Y  PE +    +    + EA+     LKKG  F 
Sbjct: 238 DAASMQDKVTVADADISAYYDQHKSSYGQPERKNYSVIQLKTEAEANAVLDELKKGGDFA 297

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   LG    E   D        +L +KG  + V+  S GY++  +
Sbjct: 298 TLAKEKSTDIISRRTGGELGWLEPETTAD---ELKQANLTEKGQLSGVVKSSVGYLVVRL 354

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           ++I P       EV+ DIA Q++  KA +      +++ E  A  +  + ++  E+   +
Sbjct: 355 NDIAPEKVKPLSEVRDDIAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGV 412

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                ++  +D     +   P  + +    + G+      +  V   DG     +++   
Sbjct: 413 KAAQTEWFTRDNVPAALNFKPVIQSIFDGSLIGEGGSPGSNSDVITVDGDRAFVIRVSGH 472

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P      ++V   V +  K  K  +E   +  +L++E  K+GK   +  K  G S  + 
Sbjct: 473 KPEGIEPFDQVKDRVAELVKRNKAEQEAKLQGEKLLVEL-KQGKG-DEAMKAAGLSFGSV 530

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVK------CFPIENGLSYVVFKVTNSKVGPVQ 585
            ++ R   +++      +  VF+ P               ++ +  +     N    P +
Sbjct: 531 QKMARAPEDSQL-----VQSVFALPHPQEGKPVYGMSQDRQDNVVLIALDAVNPGTLPAE 585

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           E   F+  + +       DS++A L+ +  + +     Q+
Sbjct: 586 EMKTFVGKMEEGATGVSFDSLLASLRKEAKIKMGAAEQQQ 625


>gi|259909248|ref|YP_002649604.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Erwinia
           pyrifoliae Ep1/96]
 gi|224964870|emb|CAX56392.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia pyrifoliae Ep1/96]
          Length = 622

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 118/631 (18%), Positives = 256/631 (40%), Gaps = 32/631 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++ +R AS   V K+ L ++ + F++ G+   L   SG      V  Q++  +    ++ 
Sbjct: 1   MDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSG-DYAAKVNGQEIGRAQLERAFS 59

Query: 62  QELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            E     Q +G   +           + ++ L  L+    L Q+ ++IGL     ++   
Sbjct: 60  SERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQA 119

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I   P F   D KF +  ++S +   G    +Y +   K L+   ++G   G        
Sbjct: 120 IFTQPAFQ-TDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTGTDFVLGNE 178

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            D       + R V  + +N   + A  + +   +  ++++++ +  +PE  R+SYI  D
Sbjct: 179 TDSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSPEQFRVSYIKMD 238

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                +   +S  ++Q+ Y+++++ Y  P+      +    + EA     +L KG  F +
Sbjct: 239 ASAMLQP--VSESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALNKGGSFAK 296

Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+E+        +   +G    E  PD        +L +KG  + VI  S G+++A + 
Sbjct: 297 LAKEKSADPISARNGGDMGWLEPETTPD---ELKNAALKEKGQLSDVITSSVGFIVARLD 353

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           + +P    +  EV  +IA +++  KA     +  +++ +  A     + ++  E++  + 
Sbjct: 354 DTQPEKVKALSEVHDEIARKLKQEKAVVAFYKLQQKVSD--AASNDNESLASAEQVAGVK 411

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESI 472
               D+  +D    E+     ++ +    + G++     +  V   DG   +V +I+E  
Sbjct: 412 AVDTDWFDRDNLPAELKFKAVQDAIFNGALLGENGAPGSNSEVITVDGDRAFVLRIREHK 471

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           P   + L++V   +    K  K  ++  ++A++L+ E  K GK   D  K          
Sbjct: 472 PEAVKALKDVAAQITDTLKQQKGLQQAKAQADKLLAEL-KAGKG-DDALKAANLRFAAQQ 529

Query: 533 QINRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQE 586
            + R   +            FS   P +    + I      + V+  +   + G  P  +
Sbjct: 530 TLMRTGQD------ALTQAAFSLPLPPQGKPSYGISEDAQGNVVLIALDKVQKGEMPEAQ 583

Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           K   +  +TQ   +    ++++ L+ +  + 
Sbjct: 584 KQALVQGITQNNAQLAFAAMLSNLRKEAKIK 614


>gi|56460109|ref|YP_155390.1| periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           loihiensis L2TR]
 gi|56179119|gb|AAV81841.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           loihiensis L2TR]
          Length = 622

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 129/639 (20%), Positives = 266/639 (41%), Gaps = 44/639 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+++ AK  LV++ + F + G+   + S      V  V  +++P S +  ++
Sbjct: 1   MLERIREGSQSYTAKAILVLIILTFALAGVGGYITS-DTEDAVAKVNGEEIPRSDYDRAY 59

Query: 61  KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + ++ G +     S+      L   +L+ L+    L Q+ ED G+     +V  
Sbjct: 60  ENERSRLQEQFGDMFSAITSDPDYMRNLRSGVLEQLIEQELLVQYAEDNGMRVSPEQVKA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     F     +F +DV++  L   G + + +     + ++R  ++            
Sbjct: 120 AIRDISQFRTA-GQFDNDVYLMALRNAGYSPEAFAKVMQQDMTRNQLLRGLSATAFVLEP 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                 R   ++RS  ++V +N       + +   +  ++++ +D +R  E   ++Y+  
Sbjct: 179 EAIAFMRLQSQSRSGGFLVASNESFEEQVEIAEQDIENFYQQNQDMFRTQEKLSVAYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK 292
            +   E ++EIS++E++  Y++ +++Y + E R V  ++        +K+A+EA   LK+
Sbjct: 239 SLAAVESEVEISDEEVRQYYDERQQQYSTEEERRVSHILIEFETDNAKKKAEEALAELKQ 298

Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F ++A+              LG      + D     S+F L   GD + V+  SFGY
Sbjct: 299 GADFSEVAQTYSDDTFSAEQGGDLGWIEAG-MMDEDFDASVFELENVGDLSDVVETSFGY 357

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRR 407
            I  +++++      F EVK ++  Q+   KA ++  E  ++L E       +++  +  
Sbjct: 358 HIIKLTDLREGSVTPFNEVKDEVRQQLLTEKAEDRYFEKQQKLAEISFEQPDTLEPAAEE 417

Query: 408 EKIVSI--DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
                   DL   D A   +    V    + EQL+      D        +   D   + 
Sbjct: 418 IGSTVRRSDLFTRDRAPTPLSDDVVLNNLFSEQLIKEKLNSD-------IIETSDDRSLV 470

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V++ E  P R ++L+EV   +  + +  K  +    +AN+ + +  K G+   D      
Sbjct: 471 VRVTEHQPVRVKELDEVREKIVSELRVEKAQQLALEQANEWM-QAWKAGEEVSD------ 523

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK-----CFPIENGLSYVVFKVTNSK 580
             ++  + I R + E+       + ++FS               + NG + VV  +T   
Sbjct: 524 -EIVWVDSIQRNNGEH---PRTIVRELFSMSPSASDESVFNTVALPNGDAAVVA-LTEVS 578

Query: 581 VGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            G   +   D+  S +     + +L + I  LK+   + 
Sbjct: 579 PGSTDDSQLDELKSQMRNRQAQVMLQAFINNLKADADIK 617


>gi|152980145|ref|YP_001353225.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp.
           Marseille]
 gi|151280222|gb|ABR88632.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp.
           Marseille]
          Length = 638

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 114/656 (17%), Positives = 243/656 (37%), Gaps = 44/656 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + IR   +  +  + L+V+F  F ++GL         S+TV  V  Q +    +  + 
Sbjct: 1   MFDFIRTH-QRLMQFLLLLVIFPSFALFGLESYTSMGDSSTTVAKVDGQAITQPEWDAAQ 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++    Q  G   + +   +    + +LD L++   L    +   L      +   I 
Sbjct: 60  REQMERFRQMFGGQFDPKMFDTPEAKQDVLDGLIAQRVLAAEAKRNKLSVSDQTLQQTIM 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
                   D KF  + + S LA +G+    Y     + L    V           + L  
Sbjct: 120 GIAGLTTADGKFDVERYKSLLAAQGMTPAMYEASLRQDLIVQQVNAAIQSTAFAPDSLAQ 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      + R V Y+        +    ++ +L  +++K  + +  PE  +  Y++    
Sbjct: 180 RLSELGEQEREVQYLTFKAADYASQVKVTDDMLKAYYDK-SNEFSVPEQVKAEYVVLTAD 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL---------- 290
               +I +S+ ++++ YE+N ++Y   E R    ++    K+A  A ++           
Sbjct: 239 ALASQINVSDADIKSYYEQNAKQYGVDEQRRASHILIAANKDAPAAEKAAAKAKAEKLLE 298

Query: 291 ---KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
              K  + F +LA+E             L  FSK  +      D+ F L K+G+ + ++ 
Sbjct: 299 TLRKSPQDFAKLAKENSNDPGSAERGGDLDFFSKGMMVKP-FEDAAFKL-KQGELSDLVE 356

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402
             +G+ I  V+ IKP+     ++VK DIAN +R    ++K  E        +     S+ 
Sbjct: 357 SDYGFHIIKVTAIKPATLKPLEQVKGDIANDIRKQLVTKKYAETADVFSNTVYEQSDSLK 416

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK-EQLLFRVFGKDDPLSKDHT--VALP 459
            ++ + K+    +  V+   +       A  P+   + L  +F +D   +K +T  V + 
Sbjct: 417 SVADKLKL---KIETVNNLSRQPNPAVAATAPFNSPKFLSALFSEDSLKNKRNTEAVEVA 473

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
             + +  ++ +  PA  R  +EV   V+      +      +   + +            
Sbjct: 474 PNTLIAGRVVDYKPASKRPFDEVKAQVRDRVIQTEALVLAKNAGEEKLAALK-------- 525

Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
             K+  +    T  ++R   +++         V       +  +      G  Y V +VT
Sbjct: 526 -AKDDASGFSATQTVSR--AKSQGVNPALFLAVMKADTSKLPSYVGVEVPGQGYGVLRVT 582

Query: 578 NSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
                   +K K       +T  + ++ + + +  LK +  V +    + +    E
Sbjct: 583 RVVQPSNVDKAKRQAEQQQITAALAQEEMQAYLDVLKEKAKVKIIKPAVAKADGAE 638


>gi|317047179|ref|YP_004114827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b]
 gi|316948796|gb|ADU68271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b]
          Length = 622

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 108/626 (17%), Positives = 255/626 (40%), Gaps = 21/626 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A    V KI L ++ + F++ G+ + L     S     V   ++  +    ++
Sbjct: 1   MMDNLRAAGNHVVLKIILGLIILSFVLTGVGNYLIG-GNSDYAAKVNGHEISRAELDQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E     Q +G   +   S       + ++ L  L+  A LDQ+I+D+ +     +V  
Sbjct: 60  NTERNRQQQMLGDQFSQLASNEGYMQQMRQQALSQLIDQALLDQYIKDLHIGISDDQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     F   + KF +  +   +   G    +Y +   K L+   ++            
Sbjct: 120 AIFNQQAFQ-TNGKFDNVKYNGLITSMGFTADQYAEALRKQLATQQLINAVANTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              +      + R +    ++   + A    ++  ++Q+++++++++ APE  R+SYI  
Sbjct: 179 ETSKLVDLVAQQREIRQATIDVNALAAKQTVTDDEISQYYQQHQNSFMAPEQFRVSYIKM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++    S  ++Q+ ++++K  Y  P+      +    + +A+    +LKKG+ F 
Sbjct: 239 DAASLQENA--SEADIQSWFDQHKADYSQPQRNRYSVIQTKTEADANAVLDALKKGEDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+ +            +G       PD        +L +KG  + VI  S G++IA +
Sbjct: 297 TLAKSKSIDPISARKGGDMGWLEPNTTPD---ELKNANLTEKGQLSGVIKSSVGFLIARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I+P       EV   +A++++  KA +   +  +++ E  A     + ++   +   +
Sbjct: 354 DDIQPEQVKPLSEVHDAVADKVKQEKAVDAFYKMQQKVSE--AASNDNESLAGAAEASGL 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
            +   D+  +D   +++     K+ +    + G++     +  +   DG   +V +I E 
Sbjct: 412 KVVETDWFSQDSVPQDLDFDAVKQAVFNGGLVGQNGAPGNNSDIISVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L++V   +    K  K  ++   +AN+L+ +    GK  +D  +  G +L  +
Sbjct: 472 KPEAVKPLDQVKAQIADTLKHDKATQQAKEQANKLLADL-NAGK--QDGLQAAGLTLSAS 528

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
             ++R   +        + Q             ++  +  V     ++   P  + D+ +
Sbjct: 529 KTVDRNAQDPVAQSAFNLPQPVDNKPSWGVSEDMQGNVVLVALDKVSTGSMPQPQIDQMV 588

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVT 617
             +TQ   +   ++++  L+ +  + 
Sbjct: 589 KGVTQNNAQIAFEALLENLRKEAKIK 614


>gi|77165248|ref|YP_343773.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|254434944|ref|ZP_05048452.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27]
 gi|76883562|gb|ABA58243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|207091277|gb|EDZ68548.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27]
          Length = 640

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/645 (16%), Positives = 254/645 (39%), Gaps = 37/645 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  ++   A + + ++ +PF +WG+++ +    G +   SV  +++    F +++
Sbjct: 1   MLEAIRNRAQGIFAWVIVGLIAIPFTLWGINNYMLD-GGEALAASVNGEEISTREFRSAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                 +   +G     E        + +++ LV    +      +GL      +   I 
Sbjct: 60  LSYTQQLRFLMGASFPEEMLDDPATKQNVIEGLVEQRLVLDTAAKLGLGMSDSSLSQVIR 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +  F G+  +F    + + L  +G+    Y       L    +V         +   ++
Sbjct: 120 SNKAFQGESGQFDSQRYEAVLGSQGLTPVAYEARLRSALLSEQLVSTLRLSAFTTQQEVE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R + Y ++ +     + + S   + Q+++ + + +R PE  ++ Y+     
Sbjct: 180 AIARLQQQKREIGYSIVPSATFRDVIEVSADKVRQYYDDHPEEFRIPEQVKVHYLRLTAD 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288
                I +    L+  YE+++++Y  PE R    ++               Q++A+  F+
Sbjct: 240 SLATDIPLDEQTLRDFYEESEDQYRVPERRRASHILITVPPQGDEATRQQAQEKAEAVFE 299

Query: 289 SLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            L++G+ F ++A+E     G +     LG F +  + D +  +++FSL + G  +  +  
Sbjct: 300 RLQQGEDFEEVAKEVSDDPGSAQKGGDLGFFGRG-VMDPAFEEAVFSLEETGALSEPVLS 358

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDE 403
            FGY I  +++I+      F+ V +++A + R   A E+  E  + L+        +++ 
Sbjct: 359 KFGYHIIKLTDIEAGEVKPFEAVSEELAQRYRRQIAEEQFYEQAEILDNLTYENPFTLEV 418

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
            +    +           G    G  +AA P      F      + ++   T+ L     
Sbjct: 419 AAETLGLSIETSEPFSQNG----GSGIAANPKVVAAAFSEEVLREEMN-SQTIELAPNDV 473

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           + V++ + + A  +  EEV  ++++     +   +   +   LV    ++G++   + K 
Sbjct: 474 VVVRLDKHLLADTKPFEEVREEIEEKLTLDQAMAQAQERGETLVAHL-QQGESPETVFKE 532

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--------LSYVVFK 575
            G ++    ++     +++    + +   +  P       P+  G            +++
Sbjct: 533 GGEAVWNEKKL--YARDDQEIPSEVLKMAYELPHPESPENPVFAGQPLGSGDYAVVGLYR 590

Query: 576 VTNSKVGPVQEKDK--FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           V N   G + EK +      + +   + +    I  LKS+  + +
Sbjct: 591 VENGNPGKLDEKARRSLAQEMEKAHGEMVYRDFIQELKSKADIKI 635


>gi|294141764|ref|YP_003557742.1| peptidyl-prolyl cis-trans isomerase D [Shewanella violacea DSS12]
 gi|293328233|dbj|BAJ02964.1| peptidyl-prolyl cis-trans isomerase D [Shewanella violacea DSS12]
          Length = 621

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 121/637 (18%), Positives = 257/637 (40%), Gaps = 43/637 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  +AK  LV++ + F   G+S  L S S  +   +V  + +  S+   ++
Sbjct: 1   MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEAAAATVNGEDISESALEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A       + K +L+ LV+   LDQ   ++GL     ++  
Sbjct: 60  QSERARLEQQMGDMFQALAANDTYLASVKKSVLERLVAEKLLDQSATELGLRVSDEQIKN 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D +F +D +++ L + G     + +     ++R  +V   VG       
Sbjct: 120 AIMIEPAFQ-TDGQFDNDRYLAILRQLGYQANTFRNMMRTDMTRRQLVASLVGSEFVLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R + Y +++     A A  ++     +++     + +PE   + YI  
Sbjct: 179 ETSYLAGIQGQTRDIRYHIVDASPFVADAKVTDEQAQSFYDANLSQFMSPETLSLEYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290
           +V +    + +++ E Q  Y++NK++Y  PE R    ++         ++ +A+  +  L
Sbjct: 239 NVADMANDVSVTDAEAQTYYDENKQQYLKPEKRLAAHILINLGDDESVSKAKAEAIYAKL 298

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           + G  F +LA+ + +      LG    + ++ + D +  + ++SL+K G ++ V+  SFG
Sbjct: 299 QAGDDFSELAKTESEDTFSGELGGKLDWFEQGVMDPAFDEVLYSLSK-GSYSTVVKTSFG 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406
           Y I  + +++P     F +VK +I  +++   A +      + L +       ++ E + 
Sbjct: 358 YHIIKLLDVQPGVEAPFADVKDNIIAELKDKAAVDTYYGLQQTLADVTYEVPDTLSEAAT 417

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
              +     P+              A     ++L   F  +  L       + L     M
Sbjct: 418 ELGVKVKTTPVFTRT-------NAPAPFDNPEVLKAAFSTNVLLDSMNSDVIELDTNHAM 470

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            ++IK    A      +V   + +  K  +  E    KA   +  ++           + 
Sbjct: 471 VIRIKSHTAAGTVNFTKVKAGIVERLKQEQANEVAREKAQTSMNAFND---------THS 521

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF-KVTNS 579
            A  +T  ++ R D   +       ++ F         +V    + NG + VV  KV  +
Sbjct: 522 SADFVTKTKLGRFD---QGIDTAITNKAFQMAQPADTAVVDTVALANGYAVVVLDKVNAA 578

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           +       +     L+   ++    ++IA LK++  V
Sbjct: 579 EGIDDNLLNSLEQRLSAQYSEGDYRALIATLKAKGDV 615


>gi|320540341|ref|ZP_08039993.1| putative peptidyl-prolyl cis-trans isomerase (rotamase D) [Serratia
           symbiotica str. Tucson]
 gi|320029661|gb|EFW11688.1| putative peptidyl-prolyl cis-trans isomerase (rotamase D) [Serratia
           symbiotica str. Tucson]
          Length = 628

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 117/638 (18%), Positives = 256/638 (40%), Gaps = 25/638 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+     KI LV++ + F++ G+ + L    G      V  Q +  +     +
Sbjct: 1   MMDNLRAAANHVALKIILVLIILSFILTGVGNYLIGGFG-DYAAKVNGQVIERAQLEQVF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G   +           + +++L  L+    L Q+ + +GL     ++  
Sbjct: 60  QSERQRMQQQLGDQFSVLAGNEGYMQRMRQQVLSQLIDNMLLAQYAKKLGLSVSDEQIKN 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++P F   D +F +  ++  L   G    ++     + L    V   F         
Sbjct: 120 AIRKTPYFQ-TDGQFDNAKYLDLLGSMGYTVDDFAQSMRQQLVNQQVTQAFGESGFMLPA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R+V    ++   + A  + S+  L  ++++ ++++ APE  ++SYI  
Sbjct: 179 ESQAMAALLLQQRNVRLATIDLSALQAKQNVSDDELKAYYQQNQNSFIAPEQIKVSYISI 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + K+++S+ ++ A Y+++K  Y  PE +    +    + EA+     LKKG  F 
Sbjct: 239 DAVSMQDKVKVSDTDISAYYDRHKSSYGQPERKNYSVIQLKTETEANAVLSELKKGGDFA 298

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            LA+++   +     G       P+ +  +     L +KG  + V++ S GY+I  +++I
Sbjct: 299 TLAKDKSTDIISRRTGGELGLLEPETTADELKQAHLTEKGQLSSVVNSSIGYLIVRLNDI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +P       +V + IA Q+R  KA +      +++    A  +  + ++  E++  +   
Sbjct: 359 EPEKMKPLSDVHETIAKQVRREKAIDAYYALQQKVS--AAATSDNESLASAEEVAGVKAA 416

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
              +  +D     +   P  + +    + G++     +  V   +G     V++      
Sbjct: 417 QTGWFTRDSIPAALNFKPVVQSIFDGSLLGENGAPGSNSDVITVEGDRAFVVRVTAHKAE 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
                ++V   V +  K  K  E+   +  QL++E  K+GK   +  K  G S  +  ++
Sbjct: 477 GIEPFDQVKDRVAEWVKHNKALEKAKLQGEQLLVEL-KQGKG-DEAMKAAGLSFGSVQKM 534

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVK------CFPIENGLSYVVFKVTNSKVGPVQEKD 588
            R   +N       +  VF+ P               ++ +  +   V      P  E  
Sbjct: 535 VRASEDN-----PLVENVFALPHPQEGKPVYGMSQDRQDNVVLIALDVVKPGSLPADEIK 589

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            F+S + Q        S++A L+      ++    ++Y
Sbjct: 590 TFVSKMEQSAASGTFYSLLASLRKDA--KINMGAAEQY 625


>gi|290474659|ref|YP_003467539.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
           outer membrane proteins [Xenorhabdus bovienii SS-2004]
 gi|289173972|emb|CBJ80759.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
           outer membrane proteins [Xenorhabdus bovienii SS-2004]
          Length = 623

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 119/633 (18%), Positives = 256/633 (40%), Gaps = 25/633 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G++  L S  G +    V  Q +  +    ++
Sbjct: 1   MMDNLRTAANGPVLKIVLALIILTFVLTGVTGYLSSEGG-NYAAKVNGQTISRAQLEQAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +Q+   +  ++G   +   S+  +   + +  LD L++    DQ+   +GL A   +V  
Sbjct: 60  QQDKIALQDRLGDQFSTLLSDEQKVQQIRRSSLDRLITVILSDQYARKLGLSASDEQVKE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI   P F   D KF ++ +++ L     +   + +   + L    ++ +  G       
Sbjct: 120 EIRNLPFFQ-TDGKFDNNKYLTLLTGANRSPDNFAEQVRQDLINRQLMSILTGSEIALPT 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            + Q     F+ R+V +  L  + + A    ++  L  +++   +++  PE  ++SYI  
Sbjct: 179 EIKQETALAFQERTVRFATLELKSIEAQQKVTDKELKNYYDVNSNSFTVPEKVKVSYIKM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D  ++ K + +S+ +++  Y+ N  +Y   E +    +   +  EA      LKKG  F 
Sbjct: 239 DAADELKSVTVSDADIEKYYKNNLPQYMQVEQKKYSMVQLVSDAEAKSVLDELKKGADFS 298

Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +LA E+            LG   +  +PD         L +KG  + VI  S GY I  +
Sbjct: 299 KLAAEKSTDKFSAQKGGDLGWMEESSLPD---EIKSAKLIEKGQLSGVIKLSGGYAIFRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +IKP    S  EV+ +I   ++  KA +      +++ +  A     + ++  EK    
Sbjct: 356 DDIKPQIIKSLVEVRSEIEKIVKQEKAVDAFYALQRKVSD--AAANDNESLTAAEKAAGY 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL-SKDHTVALPDGSY-MWVQIKES 471
                D+  +D    E+      + +       D      +  V   DG     V++ + 
Sbjct: 414 KAVTTDWFDRDHIPAEINFGSVVQTIFSGNLIDDKGASGTNSDVISVDGDRAFIVRVDDI 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   +  E+  T + +  K  K  +++  ++ +L+    KEGK      K  G     +
Sbjct: 474 KPETIQPYEQAKTQIAELVKRQKAEKQLQLESEKLLAAL-KEGKG-EQALKAAGIQFGVS 531

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
             I  +   N+      ++     P +    + +      + V+ ++     G    ++ 
Sbjct: 532 TVIKHLSQTNQ---ATNVAFTLPHPKDGKSEYGLAQDGFGNAVLIQLDKVVPGSVSEEQV 588

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
            ++I+     +   +L+S++  L+    + +  
Sbjct: 589 KQYIAAYQYQIGTFMLESLMINLRDDAEIKMGQ 621


>gi|298529972|ref|ZP_07017374.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509346|gb|EFI33250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 628

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 105/638 (16%), Positives = 256/638 (40%), Gaps = 38/638 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+I+R+ +++W+ K+   V+ + F+ WG+    F+     T+  +  + +    F  ++
Sbjct: 1   MLDIMRRNAQSWIVKVLFGVIVIVFVFWGVGS--FTEDDRETLAVINGEPISIQEFARAY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +     + ++    ++ E  RS+ L +++ + +V+   L Q    +GL     ++  EI 
Sbjct: 59  ESTAHSMREQNPG-LSREDMRSMQLREQVFNQMVNSKLLVQKASQLGLSVSREQLQQEIT 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  ++N+F    +   L    +   ++   +   L    +        +P+   + 
Sbjct: 118 SLPAFFDEENRFDPQRYEQVLRSHRLTPSQFERDFRHNLLMEKMEEYVSLPAKPNEHEVQ 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +   +      +DY +            +   + ++++  +D +  PE  RI+++     
Sbjct: 178 EFFNYVRSQAKIDYKLFEADEFHDKVSITEEQIKEYYQDNQDRFMEPEKIRIAHLELSPD 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288
                  +S++E++A ++ ++ ++  PE      ++   +++A            ++   
Sbjct: 238 ALAGAQRVSSEEVEAYFQSHQSEFEQPEEVKARHILVEVEEDAPELEQEQARERIEQILA 297

Query: 289 SLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            L+ G+ F +LA E      +     LG F +  + +    ++ F L   G+ +  +   
Sbjct: 298 ELEMGQSFEELAREHSQCPSAAEGGDLGRFGRGEMVEP-FEEAAFDLT-PGEVSSPVQTR 355

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           FG+ +  V     + +   +EV+ +I  ++   KA++++ +    + E +  G S+ E +
Sbjct: 356 FGWHLIKVEEYVEAASPDLEEVEDEIRRKIGREKAADQIGDYADDVLEIVVAGGSLKEAA 415

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
                  ++L   D+  ++ +G E   +P   + L R+F   +    +  + L D  Y++
Sbjct: 416 DSL---GLELKETDYFSRE-QGPEELELPG--EALDRLFNLMEGEVTESPIML-DNGYLY 468

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
            +      AR  +LE+V  ++ ++    K+ E     A   + +         +  +   
Sbjct: 469 AEKTGVREARSLELEKVEDEIVEELTRQKSMEMAEKAAGDKLDKI------LDEAVEPEE 522

Query: 526 ASLLTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP- 583
             L+T+   +R               Q F                 Y+V +V        
Sbjct: 523 LDLVTSEPFDRQGFIPGLGMNPQLAEQAFVQDTGSWLPEVKSTDAGYIVARVNEHIEPDM 582

Query: 584 ---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
               QEKD+++    QM  + + +S I  L+S+  + +
Sbjct: 583 EQFEQEKDQWMQSYAQMQRQQVFNSYITMLRSRADINM 620


>gi|157962498|ref|YP_001502532.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
           ATCC 700345]
 gi|157847498|gb|ABV87997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
           ATCC 700345]
          Length = 621

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 118/637 (18%), Positives = 253/637 (39%), Gaps = 43/637 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  +AK  L+++ + F   G+S  L S S      +V  +++  S+   ++
Sbjct: 1   MLEKIREGSQGVIAKSILILVILSFAFTGVSSYLGS-STEVAAATVNGEEISNSALEQAY 59

Query: 61  KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +    +++      + + +L+ LV+   LDQ   ++GL     ++  
Sbjct: 60  QNERSRLEQQLGDMFATLSADDNYMQSVKQSVLERLVAEKLLDQNAAELGLRVSDEQIKA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D  F +D + + L + G     + D     ++R  +V   VG       
Sbjct: 120 AIMSEPAFQ-TDGAFDNDRYQAILRQLGYQANSFRDMMRIDMTRRQLVATLVGSEFVLPS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R +DY V++     A    ++  +  +++     +  PE   ++YI  
Sbjct: 179 EAKYVADLQGQTRDIDYKVIDATPFLADISVTDEQIKAYYDTNLGQFIRPEVVSLNYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSL 290
           D  +  K + +++ E QA Y+++K  Y   E R    ++  +       + +A+  ++ L
Sbjct: 239 DAKDLAKDVTVTDAEAQAYYDEHKANYTQAEKRLAAHILVQSGDDDAAAKAKAEAIYKQL 298

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           + G  F +LA+ + +       G    + +  + +     ++F+L  KG+++ V+  +FG
Sbjct: 299 QDGADFAELAKTESEDTFSGEQGGQLDWFEAGVMEPEFDTALFAL-NKGEYSGVVKTNFG 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406
           Y I    +I+      F +VK+ I  Q++  +A +K  E  + L +       ++ E +R
Sbjct: 358 YHIIKALDIQAGAQAPFADVKEKILAQLKDKQAVDKFYELQQVLADTSYEVPDTLSEAAR 417

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
              +     P                +    +LL   F  +  L       + +     +
Sbjct: 418 DLGVEVKTTPEFTRT-------NPPELFTNPELLNEAFSSNVLLDRMNSDVLEVAPNHVV 470

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            +++     A   +L +V   +    K  +  E    +A + +      G     I K  
Sbjct: 471 VIRVNTHKAAGTMELADVRNAIANRLKQEQANEAARKQAQEAMTAVEASGVTADFIVK-- 528

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVFK-VTNS 579
                     +++    +      +++ F+         V    + NG + VV K V  +
Sbjct: 529 ----------DKLARFAQDVDGAIVNKAFAMAQPSDKPSVDTVALANGYAVVVLKQVNAA 578

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           +       D     L+   +++   +VIA LK++  V
Sbjct: 579 EGVDANLLDSLKQRLSSQYSENDYRAVIASLKAKGEV 615


>gi|295676521|ref|YP_003605045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
 gi|295436364|gb|ADG15534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
          Length = 644

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 102/646 (15%), Positives = 232/646 (35%), Gaps = 45/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + LV+L       G+         S+ V SV   K+    + ++ 
Sbjct: 1   MLDFFRNHQRLMMFMLILVIL-PGLGFVGIQGFRGFFDESANVASVNGHKITRVEYDDAM 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    +++LD ++    L    + + L A    V   + 
Sbjct: 60  RQQIDRGRQMLGAQFDMKAFDTPERRREMLDGMIEQRVLADETQRLHLTASDDAVRRALL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     + +   LA +G+   +Y +     L+   +          S  
Sbjct: 120 SDPVISSLKNPDGSIDLERYKQLLAMQGMTPDQYDERMRYNLAMQQLPASIAASAFTSKT 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L         + R V  I  +     A   P++A L  +++ +++++  P    I Y++ 
Sbjct: 180 LAQHLSELAQQQREVQGIAFHPHDYEAKIQPTDAQLQAYYDAHRNDFATPATAAIQYVVM 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DE 285
                   ++ S+ +L+  Y+ N   + +        ++    K+A            +E
Sbjct: 240 SPATLGASVQPSDADLKKYYDDNIAHFRTEGEVRASHILIAAPKDASTADKAKAKQKAEE 299

Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339
               LK     F Q+A    ++ G +     LG F +  I    +  D++F+L KK + +
Sbjct: 300 LLAQLKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEIS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            ++   FG+ I  V+ +KP+ T SF EVK  IA +++   AS+   ++ +     +    
Sbjct: 359 GIVQTDFGFHIIKVTEVKPAVTKSFDEVKDQIAKEVKTQLASKAFTDNSEGFTSLVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL--SKDHTV 456
            S+   + + K+      +       +        P   + L  VF  D     +    +
Sbjct: 419 KSLQPAADKFKLPIQTATVTPQPDAKLPPDSPLNNP---KFLAAVFANDSVSAHNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + D + +  ++ +  PA     + V   V++     +  E         + E+ K    
Sbjct: 476 DVGDNTLIAARVTDYKPAAVPAFDAVKDAVRQKVIAEQANEAAHKDGAAKLAEFEKS--- 532

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                    A+   ++ +    N+ +      +S ++    + +  +   +     Y ++
Sbjct: 533 --------KATAGFSSPLKVSRNDAQGVPPAALSAIYKVDAQKLPAYVGVDLGDDGYAIY 584

Query: 575 KVTNSKVGPVQEKDKFI---SYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +V         +          + Q+  +   ++ +  L+ +  V 
Sbjct: 585 RVNRIVPPAATDAQHLAVAQQQIAQVDAQSQAEAYLKALRERSKVQ 630


>gi|77360982|ref|YP_340557.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875893|emb|CAI87114.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 633

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 122/637 (19%), Positives = 251/637 (39%), Gaps = 31/637 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  +AK+ L  + + F + G+   L   +    V  V   K+  + F  ++
Sbjct: 1   MLEKIREGSQGPIAKVILGAVILSFALAGIGSYL-GQTTEQPVAEVNGIKISQTEFNRAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E G + Q+ G       ++      + + ++D LV      Q   ++GL      V  
Sbjct: 60  QNERGRLEQQFGEYFTQIAADPNYMAQIRQGVIDRLVQQELQTQLAAELGLRVSDESVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F      F++D ++  + +       + ++  K ++R+ +V    G       
Sbjct: 120 TILELPYFK-IGESFNNDRYLQVIRQMNFQPDSFREYLRKDMTRSQLVSAVAGSDFALKN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L+ A     + RS+DY+V+N   +      S   +  ++E     + +PE   ++YI  
Sbjct: 179 ELESAIALQQQTRSIDYLVVNKEAMQDSVVVSEQEIADYYELNSGQFLSPERLSVNYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
              +      ++ D+++A YE++K +Y  PE R V  ++          + +A+     L
Sbjct: 239 KAQDI-TVASVTEDDVKAYYEQSKAQYVEPEKRRVSHILIDNSEDDDAAKAKAESLLAQL 297

Query: 291 KKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            +G  F +LAE     +    +G    + +  + D    D+ F+L  KGD++ VI   FG
Sbjct: 298 NQGADFAELAESSSDDIVSGEMGGDLEWIERDVMDPVFEDAAFALENKGDYSDVIASEFG 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y I  +++++     ++ +VK D+  ++   +  +   E    +       +  D +   
Sbjct: 358 YHIIKLTDLQAQQVKAYDDVKADLRAELEKAEKVDAFYEKQTEMAALAFEIS--DRLVDA 415

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
            +   +++        +   + + +      L      +D        + L +   + V+
Sbjct: 416 AEAAGVEIKSTPLVALNELPEPLNSPAVITALTSVDLLEDKV--NSELIELGNEHVIVVR 473

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + E  PA  + L +V   +K      KT+     KA  L  E  + GK+  D+      +
Sbjct: 474 VNEHEPAATKALSDVSEQIKASLVNEKTSALAKEKARTLFAE-VQAGKSLNDVAAEQNLT 532

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVF--KVTNSKV 581
           +    Q+ R    +       ++Q F          V+   + NG + +V    VTN++V
Sbjct: 533 VRQEAQLTRQ---SYTVSPAIVTQAFKMAHPTDSAIVELVNLNNGDAAIVALKSVTNAEV 589

Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                  +    +T           I  LK+Q  + +
Sbjct: 590 AD-NIDPQIQQNITMAQANKNYMVFIESLKAQAKINL 625


>gi|209694402|ref|YP_002262330.1| peptidyl-prolyl cis-trans isomerase D [Aliivibrio salmonicida
           LFI1238]
 gi|208008353|emb|CAQ78508.1| peptidyl-prolyl cis-trans isomerase D [Aliivibrio salmonicida
           LFI1238]
          Length = 618

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 122/634 (19%), Positives = 239/634 (37%), Gaps = 25/634 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ IR+ S   V KI L ++   F+  G+   L   S       VG +++  + F   +
Sbjct: 1   MMDRIREGSTGLVVKIILGLIIFSFVFAGVGSYLVGGS-QPLAAKVGEREITRNDFEQVY 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++   + A      K +LD +V+ A LD   +++GL     ++  
Sbjct: 60  QNERNRMQSQLGEYFSTLLGDPAYVEQFRKSVLDRMVNDALLDNQAQELGLRVSDEQIRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  KD KF  ++F   L R G     + ++    L R  +V          + 
Sbjct: 120 AILSMPQFQ-KDGKFDEEIFNVSLRRAGFTSDSFAEYLRGDLVRNQLVSALESTEFTLSN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +        + R +  I L+       A  +   + ++++  K  +  PE  ++SYI  
Sbjct: 179 EVKAQGELEGQQREIRTITLDTATFAKNAKVTEEEVKEYYDANKQQFVRPEQVKVSYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-NQKEADEAFQSLKKGKKF 296
                + +  I+++E+Q  Y +N++KY + E R V  ++   ++ +A      L  G+ F
Sbjct: 239 SGESLKAQAPITDEEIQTYYNENQDKYSTQEKREVSHILIKGDEADAQAVLARLDAGEDF 298

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+E  + +       SLG   +  I D    D+ F L   GD + ++  +FGY I  
Sbjct: 299 ATVAKEDSQDIPTAKEGGSLGWIERGVI-DPEFEDAAFQLVNVGDHSGLVKSAFGYHIIQ 357

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIV 411
           +  I+   T    +V  DI   +    A++        L E+      S+D+ +      
Sbjct: 358 LDAIEAPKTKPLAKVSADIKAFLVDEHAADAFYSMQTELAEKAFESPDSLDDAAEAVNAK 417

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
            I       A        + A     Q ++    K+D L+ D  + +     + V+++ES
Sbjct: 418 VITSDFFSQA----DAPALLANSDVLQAIYSAEVKEDGLNSD-VIEIAPEHVVVVRVEES 472

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                  LEEV   V       K  ++    A  ++   +K   +        G      
Sbjct: 473 RDEMVLPLEEVKASVITRLSQAKGEQKALELAKNIITALNK---DDDAYLSEQGLVFTEA 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
             I R D               +             G + +V      ++      ++  
Sbjct: 530 RMITRADELANDVYRLQKP---TADKPTYAQVMDRQGNNVIVALDDVLELDNSAMAEQVS 586

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           + L +   +  L + +  LKS  +  +   L+++
Sbjct: 587 TRLLRTQTQQDLTATLDTLKS--NTEISYPLLEQ 618


>gi|167624682|ref|YP_001674976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
 gi|167354704|gb|ABZ77317.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
          Length = 621

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 119/636 (18%), Positives = 256/636 (40%), Gaps = 41/636 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  +AK  LV++ + F   G+S  L S S      +V  +++  S+   ++
Sbjct: 1   MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEVAAATVNGEEISNSALEQAY 59

Query: 61  KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +    +++      + + +L+ LV+   LDQ   ++GL     ++  
Sbjct: 60  QNERSRLEQQLGDMFATLSADDNYMQSVKQSVLERLVAETLLDQNAAELGLRVSDEQIKA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D +F +D + + L + G     + D     ++R  +V   VG       
Sbjct: 120 AIMTEPAFQ-TDGRFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVATLVGSEFVLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R +DY V++     A    ++  +  +++   D +  PE   + YI  
Sbjct: 179 EAKYLADLQGQTRDIDYKVIDATPFLADISVTDEQIKTYYDSNLDQFIRPEVVSLDYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290
           D  +  K +++++ + QA Y+++K  Y   E R    ++          + +A+  ++ L
Sbjct: 239 DAKDLAKDVKVTDADAQAYYDEHKANYTQAEKRLAAHILVQAGDDDAAAKAKAEAIYKQL 298

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           + G  F +LA+ + +       G    + +  + +     ++F+L  KGD++ V+  +FG
Sbjct: 299 QDGADFAELAKTESEDTFSGEQGGQLDWFEAGVMEPEFDTALFAL-NKGDYSNVVKTNFG 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y I  + +I+      F +VK+ I  Q++  +A +K  E  + L +        D +   
Sbjct: 358 YHIIKLLDIQAGAEAPFADVKEKIIAQLQEKQAVDKFYELQQVLADTSYEVP--DTLVDA 415

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMW 465
            K + +++       +    +    +     LL   F  +  L       + +     + 
Sbjct: 416 AKDLGVEVKTTVEFARTNPPE----LFSNPDLLKEAFSSNVLLDGMNSDVLEVEPNHVVV 471

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           +++     A    L +V   +    K  +  E    +A +L+      G           
Sbjct: 472 IRVNTHKAAGTMDLADVRNAIANRLKQEQANEAARKQAQELMTAVEASGVTSD------- 524

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVFK-VTNSK 580
              +  +++ R + +        +++ FS         V    + NG + VV K V  ++
Sbjct: 525 --FIVKDKLARFEQDVDG---AIVNKAFSMAQPSDKASVDTVALANGYAVVVLKQVNAAE 579

Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
                  +     L    +++   +VIA LK++  V
Sbjct: 580 DVDASLLEALKQRLNSQYSENDYRAVIASLKAKGEV 615


>gi|82703453|ref|YP_413019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
 gi|82411518|gb|ABB75627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
          Length = 626

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/648 (17%), Positives = 259/648 (39%), Gaps = 45/648 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + + K  R  + +I L +  +PF+ WG+     +      V     +K+    F  + 
Sbjct: 1   MFDFVNKKRR--IVQIILGLATLPFVFWGVESY-RNADAGDHVALAAGEKISRQEFEQAL 57

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   +   +G   +        +   IL+ L+    L Q    +GL     ++   I 
Sbjct: 58  RNQQENMRATLGENFSPALLEKPEVRAAILEGLIQQRLLRQEASRVGLGVADAQLIEMIQ 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
              LF  +D  FS   +   L  +G+N + +     + L R  +V  F      S+ + +
Sbjct: 118 NIDLFQ-EDGNFSKQRYEEWLRNQGMNARAFEARLRQDLMRQQLVDPFSKNAFISHSVAE 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  R   E R V  + +      A   P N  +  ++E +K  ++ PE  R+ Y++  + 
Sbjct: 177 RILRLGDEKREVRVVQIQPEQFLANVKPGNDAIRAYYEAHKAEFQVPEQARVEYVVLSMD 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAFQSL 290
              +K +++ DE  A YE++K ++  PE R    ++             + +A+E    +
Sbjct: 237 ALAEKAQVTADEALAYYEEHKHEFGQPEERRASHILISAPASASDRATARAKAEELLAEV 296

Query: 291 KK-GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           +K  ++F +LA+    + G + +   LG F++  +   S  D++F + K G+ + ++   
Sbjct: 297 RKSPQRFTELAKQHSQDPGSAPTGGDLGFFARNMMTK-SFEDAVFRM-KPGEISDIVETE 354

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEI 404
            G+ I  ++  +     S +EVKK +  ++R  KA++   E        +     S+  +
Sbjct: 355 HGFHIILLAEARGGKQASLEEVKKQVEQEVRKQKAAKTFGEMADSFSNMVYEQSDSLKPV 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGS 462
           +    +   +   +     +             +LL  +F +D    K +T  + +   +
Sbjct: 415 AESLGLTIQESGWIRMNSDEP------PYLNNARLLQAIFSEDAIKDKRNTEAIEVSSNT 468

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            +  ++ +  PA    ++E+   +       + +    ++  + + +  +        GK
Sbjct: 469 LVSARVVDYKPAATPSVDELRDKIAALVAREEASRAAINEGKEQLAQLQQ--------GK 520

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI----ENGLSYV-VFKVT 577
                     Q++R   E + F  + +  +F      +  +      + G + + V +V 
Sbjct: 521 TAPIKWTPGQQVSR--RERQGFDNETVQAIFRAETNHLPAYSGLPNAQGGFTLIRVDRVI 578

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            S+    +E+  F   L+Q+  ++   S +  +K +Y V+V    +++
Sbjct: 579 ESRPPSAEERKTFAGQLSQLFAQEEFSSYLDGIKKRYDVSVRSESLEK 626


>gi|157374684|ref|YP_001473284.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
 gi|157317058|gb|ABV36156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
          Length = 621

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 121/636 (19%), Positives = 262/636 (41%), Gaps = 41/636 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  +AK  LV++ + F   G+S  L S S  +   +V  +++  S+   ++
Sbjct: 1   MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEAAAATVNGEEISESALEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A    L    + +L+ LV+   LDQ   D+GL     ++  
Sbjct: 60  QNERARLEQQLGEMFAALSADERYLSSVKQSVLERLVAEKLLDQTATDLGLRVSDAQIKN 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D  F +D + + L + G     + D     ++R  +V   VG       
Sbjct: 120 AIMTEPAFQ-TDGVFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVASLVGSEFVLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +       + R + Y  ++     A A  ++     +++     + +PE   + YI  
Sbjct: 179 EANYLADIQGQTRDIRYHWVDAAPFIAEAVVTDEQAKSYYDANLAQFMSPETLSLEYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290
           +  +    + +S++E +  Y++NK++Y   E R    ++          + +A+  +  L
Sbjct: 239 NAKDMAAGVTVSDEEAKTYYDENKQQYLKAEKRLAAHILVSLGDDDSTAKAKANAIYAKL 298

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           + G++F +LA+ + +       G    + +  + + +  + ++SL+K G+++ V+  SFG
Sbjct: 299 QAGEEFSELAKAESEDTFSGEQGGQLDWFEPGVMEPAFDEVLYSLSK-GEYSAVVKTSFG 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y I  + +++P+   +F++VK  I  Q++  +A ++     + L +        D +S  
Sbjct: 358 YHIIKLLDVQPAAEAAFEDVKSKILAQLKEKQAVDQYFGLQQTLADVTYEVP--DTLSEA 415

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMW 465
              + I++       ++             ++L   F  +  L       + +     M 
Sbjct: 416 ATELGIEVKSTPVFSRNNAPAPF----DNPEVLKAAFSTNVLLDRMNSDVIEIEANHAMV 471

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V+IK    A      +V + + +  +  +  E   +KA +L+  +S           + G
Sbjct: 472 VRIKSHTAAGTVDFAKVKSAIVERLQQEQANEVARAKAQELMTSFS---------SDSAG 522

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVF-KVTNSK 580
              +T  ++ R D E        + + F         +V    + +G + VV  KV  ++
Sbjct: 523 IDFITKTKLGRFDQE---IDGAIVGKAFQMAQPAASAVVDTVALASGYAVVVLDKVNAAE 579

Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
                        L+   ++    ++IA LK+   V
Sbjct: 580 AIDDNMLSSLKQRLSSQYSEGDYRALIATLKANGEV 615



 Score = 37.3 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 2/120 (1%)

Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
             +KAN +  +  + G+ F ++ K       +  Q  ++D            +V     +
Sbjct: 287 AKAKANAIYAKL-QAGEEFSELAKAESEDTFSGEQGGQLDWFEPGVMEPAFDEVLYSLSK 345

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY-LTQMMNKDLLDSVIAYLKSQYSVT 617
                 ++    Y + K+ + +       +   S  L Q+  K  +D      ++   VT
Sbjct: 346 GEYSAVVKTSFGYHIIKLLDVQPAAEAAFEDVKSKILAQLKEKQAVDQYFGLQQTLADVT 405


>gi|323526043|ref|YP_004228196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
 gi|323383045|gb|ADX55136.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
          Length = 646

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 103/645 (15%), Positives = 234/645 (36%), Gaps = 41/645 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + LV +       G+         S+ V SV   K+  + + N+ 
Sbjct: 1   MLDFFRNHKRLMMFMLILV-IVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDNAM 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L    Q +G   + +   +     ++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQLDRARQMLGAQFDIKAFDTPERRSEMLDGLIEQRVLADETQRLHLTASDDAVRRVLL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     D +   LA +G+   +Y +     ++   +     G    S  
Sbjct: 120 NDPVISSLKKPDGSIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKT 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L         + R V  I  + R   A   P++A L  +++ +++++  P    I Y++ 
Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DE 285
                   ++ S+ +L+  Y+ N   Y +        ++    K+A            +E
Sbjct: 240 SPATLAASVQPSDADLKKYYDDNIAHYRTEGQVRASHILIAAPKDASPADKAKAKQKAEE 299

Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339
               +K     F Q+A    ++ G +     LG F +  I    +  D++F+L KK + +
Sbjct: 300 LLAQVKAHPDQFAQIAQQNSQDPGSAAKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            ++   FGY I  V+++KP+ T  F EVK  IA  ++   AS+   +D +     +    
Sbjct: 359 GIVQTDFGYHIVKVTDVKPAVTRPFDEVKDQIARDLKTQLASKAFSDDSEGFTSIVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            S+   + + K+      +       +              +F     +   +    + +
Sbjct: 419 KSLQPAADKYKLQVQTATVTPQPDPKLPPDSPLNNAKFLAAVFANDSVN-ARNNTQAIDV 477

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
              + +   + +  PA    L+ +   V++    V++ E         + E+ K      
Sbjct: 478 GGNTLIAAHVTDYKPAAVPPLDAIKDAVRQKVIAVQSDEAAHKDGLAKLAEFQKS----- 532

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKV 576
                  A+   ++ +    N+ +      +S ++    + +  +   +     Y +++V
Sbjct: 533 ------KATTGFSSPLKVSRNDAQGVPPAALSAIYKADAQKLPAYVGVDLGDDGYAIYRV 586

Query: 577 TNSKVGPVQEKDKFISYLTQMM---NKDLLDSVIAYLKSQYSVTV 618
                    +  +  +   Q+    ++   ++ +  L+++  V +
Sbjct: 587 NAVVAAAPVDPQRLAAAQQQIAQVESQSETEAYVKALRARSKVKL 631


>gi|212636023|ref|YP_002312548.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
 gi|212557507|gb|ACJ29961.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
          Length = 619

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 122/635 (19%), Positives = 258/635 (40%), Gaps = 41/635 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  +AK  LV++ + F   G+S  L S S      +V  +++  S+   ++
Sbjct: 1   MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEVAAATVNGEEISNSALEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E G + Q++G + +   ++      + + +L+ LV+   LDQ   ++GL     ++  
Sbjct: 60  ENERGRLEQQLGDMFSTLSADDNYMQSVKQSVLERLVAEKLLDQNAAELGLRVSDEQIRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I + P F   D +F +D + + L + G     + D     ++R  +V   VG       
Sbjct: 120 AIMQEPAFQ-TDGRFDNDRYQAILRQLGYQANSFRDMMRVDMTRRQLVATLVGSEFVLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +       + R ++Y+V+++    A A  ++  +  ++      +  PE   ++YI  
Sbjct: 179 EAEYLANIQGQTRDINYLVIDSTPFLAAASVTDEQIQTYYNSNLGQFVRPEIVSLNYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKK 292
           D  +    + ++  + +  Y++NK +Y  PE R    ++        +++A+  +Q L+ 
Sbjct: 239 DAKQLAADVTVTEADAKTYYDENKVQYLQPEKRLAAHILIGLDEDNAEEKAEAIYQKLQN 298

Query: 293 GKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           G+ F  LA+ + +       G    + +  + +     ++F+L K G ++ V+  +FGY 
Sbjct: 299 GEDFAALAKAESQDTFSGEQGGQLDWFEAGVMEPEFDAALFALDK-GSYSNVVKTNFGYH 357

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRRE 408
           I    +I+      F +VK+ I  Q++  +A +K  E  + L +       ++ E +R  
Sbjct: 358 IIKALDIQAGAEAPFADVKEKIIAQLQEQQAVDKFYELQQVLADTSYEVPDTLSEAAREL 417

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWV 466
            +     P               A+  K  +L   F  +  L       + +     + +
Sbjct: 418 GVEVKTTPEFTRNS-------APALFSKPAILKEAFSSNVLLDGMNSDVLEVEANHVVVI 470

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++     A   +L EV   +    K  +  E    +A   +  +  +G           A
Sbjct: 471 RVNSHKAAGTMELAEVRDGIAGRLKQEQANENARQQAQDAMTAFKADGST---------A 521

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF-KVTNSKV 581
             L  +++ R + +        +S+ F+         V    +  G + VV  KV  ++ 
Sbjct: 522 GYLVKDKLARFEQD---IDGAVVSKAFAMAQPTDTATVDTVALATGYAVVVLNKVNAAEG 578

Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
                 D     L     ++   +VIA LK++  V
Sbjct: 579 VDENLIDALKQRLNSQYTENDYRAVIAGLKAKGEV 613


>gi|186475780|ref|YP_001857250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
 gi|184192239|gb|ACC70204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
          Length = 642

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/645 (15%), Positives = 228/645 (35%), Gaps = 41/645 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + LV+L       G+         S+ V SV   K+    F N+W
Sbjct: 1   MLDFFRNHQRLMMFMLILVIL-PGLGFVGIQGFRGFFDESANVASVNGHKITRGEFDNAW 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   +++   +    K +LD L+    L    + + L      +   + 
Sbjct: 60  RQQMDRARQMLGAQFDAKMFDTPERRKDMLDGLIQQRVLADETQRLHLTVSDDALRRALL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     + +   LA +GI   +Y +     +S   +             
Sbjct: 120 ADPVIGSLKNPDGSIDVNKYKELLAMQGITPDQYQEQVRYSMSMQQLPAAITQTSFTPKT 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L         + R V  +    +   +   P++A +  +++ ++D++  P    I Y++ 
Sbjct: 180 LAQHLTELAEQQREVQGLAFRAKEYESKVQPTDAQIQAYYDAHRDDFATPATATIQYLVL 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                      S+ EL+  Y+ N   + +P       ++               +++A E
Sbjct: 240 SPATLAAAANPSDAELKKYYDDNIAHFRTPGEVRASHILIVAPKDASSADKEKAKQKARE 299

Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339
               +K     F QLA    ++ G +     LG FS   I    +  D++F + KK + +
Sbjct: 300 VLAQVKAHPDQFAQLAQQNSQDPGSASKGGDLGYFSPGMIAGGKAFDDAVFKM-KKDEVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
            +I   FGY I  V++++PS T  F+EVK  IA  ++   A++   +D +     +    
Sbjct: 359 DLIQSDFGYHIVKVTDVRPSVTKPFEEVKDSIAKDLKAQLATKAFGDDSEGFTSTVYEQA 418

Query: 400 -SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            S+   + + K+      +   A   +              +F      D  +    + +
Sbjct: 419 KSLQPAADKYKLQIQTATVTPRANSALPPDSPLNNAKFLAAVFANDSAKD-RNNTQAIDV 477

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
            + + +   + +  PA    L  V   V++     + A+    +    + +  K  K+  
Sbjct: 478 GNNTLIAAHVTDYKPAAVPALAVVRDAVRQKVVAQRAADLARKEGEAKLADLRKS-KSTD 536

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKV 576
                L  S           N+ +      +  ++    + +  +   +     Y +++V
Sbjct: 537 GFSSALKVS----------RNDAQGVPPAALGAIYKADAQKLPAYVGVDLGADGYAIYRV 586

Query: 577 TNSKVGPVQEKDKFI---SYLTQMMNKDLLDSVIAYLKSQYSVTV 618
            +       +  +       +  +  +   +S +  L+++  V +
Sbjct: 587 NSIVPPAPTDAQRLTSAQQQIASVNAQAEAESYLDALRARSKVKI 631


>gi|197284031|ref|YP_002149903.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis HI4320]
 gi|194681518|emb|CAR40403.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis HI4320]
          Length = 625

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 134/633 (21%), Positives = 269/633 (42%), Gaps = 29/633 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ IR  +     KI L V+ + F++ G+   LFS SG +    V   K+  +    ++
Sbjct: 1   MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFS-SGVNDAAEVNGYKISRAQLEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVG---LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +Q    + + +G    S  +   G   + ++ L+ L++ A LDQF +++G+ A   ++  
Sbjct: 60  QQRRAQLQKDMGDNFASLASSDEGQKMIRQQALNVLINQALLDQFAQELGISAGDQQIRD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +  +V  L    I+   + +   + L    +     G       
Sbjct: 120 AIFALPYFQ-TDGKFDNKKYVELLTANNIDADAFAEGIRQNLINQQLRYSIQGTDFALES 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +        ++R+V    L+ +        S+  L  ++++    + AP   ++SYI  
Sbjct: 179 EVKDFAGLMLQSRNVRLASLDIQPFLEKETVSDEELKAFYDQNTSMFIAPAQVKVSYIQL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           +  +    I IS+DE++A Y+ N  ++  P  +    LV  ++  A EA  +LK G  F+
Sbjct: 239 EAQKDLSNITISDDEVKAYYDSNISEFTVPGQKKYSLLVLADETAAKEAEDALKNGADFV 298

Query: 298 QLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            L +E+      +  D SLG  +        LA++  SL +KG  +  +  S GY I  +
Sbjct: 299 TLVKEKSIDTFSAKQDGSLGWITIGQEL-PELANA--SLTEKGQISQPVKISNGYAIFRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +IKPS    F ++K D+  +MR  KA +      +++ +  A     D ++   K  ++
Sbjct: 356 DDIKPSVVKPFDDIKADLLVKMRENKAIDDFFALQQKVSQ--AASNDNDTLATAAKAGNV 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIKES 471
            +   D+  ++     +      + +       D+  +      V L + S   V+++  
Sbjct: 414 TVINTDWFDENNVPAALNNEKLTQLIFGGSLVDDNGPTGMNSDMVTLGNDSAYIVRVEGY 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            PA  + L++V   V    K  K ++ ++++A +L+    KEGK      K    S    
Sbjct: 474 KPASTQPLDKVRDKVITLVKQQKASQAMNAQAQKLLAAL-KEGKG-EAALKEANISFGEV 531

Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIEN--GLSYVVFKVTNSKVG-PVQE 586
             +      +          +F+   P E  K + + N  G   V+ ++ +   G P  E
Sbjct: 532 ESVVHSSATDPIQS-----AIFAMPKPAEGKKEYGMSNVPGSKVVLIQLDSVTDGKPTAE 586

Query: 587 KDKFISYL-TQMMNKDLLDSVIAYLKSQYSVTV 618
           + +F++ L    M ++ L  +++ L+ +  + +
Sbjct: 587 QLEFMTNLYRAQMGEEALQLMLSDLREKAKIEI 619


>gi|74317691|ref|YP_315431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057186|gb|AAZ97626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 647

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 121/647 (18%), Positives = 247/647 (38%), Gaps = 43/647 (6%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           LE IRK ++ W+AK+ L ++ V F ++G+   +        V  VG+  +         +
Sbjct: 16  LEAIRKHAKGWLAKVILGLIAVTFALFGIDSYMSGDRSGGVVAEVGKVGITREELTREIQ 75

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            +   + + +G   +     +    K++LD+L+    L    E +   A    V   I +
Sbjct: 76  AQSDRLRESLGPAFDPSMTETAAFRKQVLDSLIERKALLLEAEKLKFLAPDSYVAAAIGQ 135

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P F  +D KFS   + + L + G     + +   +      V          +   L+Q
Sbjct: 136 IPAFQ-QDGKFSPQRYEAILRQNGRTPASFENELRQAFMLEGVTSPVTLAAFNATTTLEQ 194

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
             R   + R + ++ L    V      + A + + +   K  +  PE  R  Y++ D   
Sbjct: 195 VARLVAQQREISWVDLPVASVADEVKVTPADVERHYAANKPAFTEPEQIRAEYVVLDAAA 254

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL----------- 290
               I +S   ++  Y  N  ++  PE R+   ++    K++D A ++            
Sbjct: 255 LVAGISVSEQAVRDYYAANAAQFGQPEQRSASHILIAADKDSDAATRAKAKAKATALMET 314

Query: 291 --KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             K+ ++F +LA    ++ G +  D SLGSF +  +      D++F++ K  +    +  
Sbjct: 315 LRKQPERFGELARSTSQDPGSAEQDGSLGSFGRGMMVKP-FEDAVFAM-KPKEIRGPVES 372

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FGY I  + +I+P       EV+  I +++R  +A +   +        +       E 
Sbjct: 373 DFGYHIIRLDSIEPGKAAPLAEVRAAIVDELRKQQAQKTFADLADNFSNLVY------EN 426

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGS 462
           +   +  +    L       +  K          L   +F  +   S+ +T  + +  G+
Sbjct: 427 AESLQPAAAAAKLTVQQSGWMNAKAAPPPFDNPALSAALFSPESIKSRQNTEAIEIKPGT 486

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            +  ++ E   AR R L EV  ++++  +  +TA+ ++ KA   +       K+ +D GK
Sbjct: 487 LVAARVVEHRAARLRPLSEVSAEIERTMRAEQTAQLLAKKAEATI-------KSLQD-GK 538

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI---ENGLSYV--VFKVT 577
             G        + R           G+  VF    E    +      +G   +  V +V 
Sbjct: 539 ESGLDWTAFQVVGRQ--PGASLDAAGVKAVFRANAEKTPAYTGFARPDGSYRIVRVTRVV 596

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                     +   S + Q   +  + ++IA + + + V +  N I+
Sbjct: 597 EPASLDPMLMESIGSGVMQAQQRADMKALIALVTAGHKVKIQPNAIE 643


>gi|303249065|ref|ZP_07335308.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           fructosovorans JJ]
 gi|302489530|gb|EFL49472.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           fructosovorans JJ]
          Length = 654

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 115/651 (17%), Positives = 256/651 (39%), Gaps = 45/651 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK +++W  KI   ++ + F+ WG+    F    ++ + ++  Q V    +  ++
Sbjct: 1   MLDPMRKYAQSWGIKIVFGLIILVFVFWGVGS--FRGDKATVLATIDGQPVLIKDYEKAY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E   + +     +  +  +  G   ++  N+V+   L++  + +G+      +  EIA
Sbjct: 59  R-EAQRLVKNKNPDITDKELQDGGFRWQVFSNMVTSRLLEEQAKKLGVSVSADELRAEIA 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F  K  KF    + + L    +   E+   + + L    + G        S     
Sbjct: 118 KIPAFQDKSKKFDAKRYENLLRANDVTPGEFEADFRQNLLLEKLAGFVSLPASVSEAEAR 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               F  E   + YI+           P++  +  ++E  KD +  P   +I Y+ F   
Sbjct: 178 SIFDFMREQAVIKYIMFKAEDFDKGITPTDEQIKAYYEARKDQFATPAKIKIDYVEFTPK 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288
              +  ++++ +++A Y+ N++KY  PE   V   +     +A             +   
Sbjct: 238 ALAQPDKVTDADIEAYYKANQKKYARPEQVKVRHFLIMLPADAPKSAVDAATAKLKDIAA 297

Query: 289 SLKKGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
            LK G  F  L  +         G+  + +  GS  KE+ P     +  FSL K G+ + 
Sbjct: 298 KLKAGAAFASLLPKNPNNADGLIGEDWAWLPKGSLPKEFGP---FEEKAFSL-KNGEISE 353

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
            +  + G  +      + +      EVK DI  ++   KAS+K+ +    +++ +A G  
Sbjct: 354 PVRTALGLHLIQAGERQAAGERPLSEVKDDIREELAERKASDKLTQSLDNMQDKIASGVD 413

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
           + + +  EK+       V  A    K      +   +Q L  +F        D  ++  D
Sbjct: 414 LGKAAADEKL------PVKSADFFSKDNPPTDLGLSDQALGVLFSMKKGAVSDTPLSTQD 467

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
           G ++  ++ +  PA  + L++V   +K+     +  +   +KA++   +  +     + +
Sbjct: 468 G-FLLARVSDIQPAGFQSLDDVKEAIKQRLIADEAQKRARAKADE-TAKAMETPAGEQKV 525

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFS--GPVEMVKCFPIENGLSYVVFKVT 577
                  + T+   +R            + Q  F   GP      + +  G  YV+  + 
Sbjct: 526 LAEYKDKIQTSQPFSRQGFIPGLGMAPVLVQTAFEAKGPGWFKAAYGVTGG--YVLASLD 583

Query: 578 NSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV-HDNLI 623
                      +EKD++++ L+Q    +L  + ++ ++    V + + +++
Sbjct: 584 KKIPADPALWEKEKDRWLATLSQSKQSELFKAYLSTVQQGAKVEIVNQDIL 634


>gi|322834042|ref|YP_004214069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602]
 gi|321169243|gb|ADW74942.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602]
          Length = 626

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/637 (17%), Positives = 252/637 (39%), Gaps = 23/637 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + F++ G+ + L   SG      V  Q++  +    + 
Sbjct: 1   MMDNLRAAANHVVLKIILALIILSFILTGVGNYLIGGSG-DYAAKVNGQEIGRAQLEQAV 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + +   + Q++G   ++          L ++ L NL+    LDQ+ + +G+     ++  
Sbjct: 60  QNQRSRLQQQLGDQFSALAGSDGYMQQLRQESLSNLIDVTLLDQYSKKLGITVSDQQIKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D +F +  ++  +   G     +     + L    +   +        +
Sbjct: 120 AIFATPQFQ-TDGRFDNAKYLQSIQGMGYTADNFAQLMKQQLISQQLEQAYGQSDFVLPV 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     ++R V    L+   + A    ++A L  ++++ K+++ +PE  ++SYI  
Sbjct: 179 ESKSLGGLILQSRDVQTATLDTDALAAKQQVTDAELQAFYDQNKNSFLSPEQVKVSYIEM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    + K  +++ ++ A Y+++K ++  PE R    +V  +Q +AD     LKKG  F 
Sbjct: 239 DAAAMQGKTNVTDADISAYYDQHKSEFGQPERRRYSVIVLKSQADADAVAAELKKGTDFA 298

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +LA+ +         G       P+ +L +    +L  KG  + VI    G+ I  + ++
Sbjct: 299 ELAKTKSTDALSARQGGDLGWMEPETTLPEFKNANLTTKGQVSGVIKSDSGFFILRLDDV 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
            P       +V+  IA++++  K+ +      +++ E  A     + ++  E +      
Sbjct: 359 TPEQVKPLADVRNTIADKLKQEKSLDAYYALQQKVSE--AATNDNESLASAEDVAGTKAV 416

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
             D+  ++     +   P  + +    + G+D     +  +   DG     V++      
Sbjct: 417 HTDWFTQNQIPAGINFKPVVQAIFDGGLIGQDGSPGSNSDIITVDGDRAFVVRVDAHKAE 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
             +   +V   V    K  K  ++   +  +L+    KEGK   D  K  G +     ++
Sbjct: 477 GVKPFADVKDQVTTLVKRQKAQDQARMEGEKLLTAL-KEGKG-DDAMKAAGLTFGAVQKV 534

Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
            R    + F        V++ P       V     ++  + V+ K+     G  P  +  
Sbjct: 535 QRSQQPSAFE-----ENVYALPHPQKDQPVYGLTQDDKGNSVLVKLNAVTPGTIPAADTA 589

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   + Q  +    DS++  L+ +  +        +
Sbjct: 590 RFNQEMQQTSSNVAFDSLLTNLRQEAKIKYGSAAQNQ 626


>gi|85058653|ref|YP_454355.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Sodalis
           glossinidius str. 'morsitans']
 gi|84779173|dbj|BAE73950.1| peptidyl-prolyl cis-trans isomerase D [Sodalis glossinidius str.
           'morsitans']
          Length = 617

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 112/630 (17%), Positives = 247/630 (39%), Gaps = 24/630 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++   F++ G+ + L    G      V  Q++  S    + 
Sbjct: 1   MMDNLRAAANHVVLKIILGLIAFSFVLTGVGNYLIGGDG-DYAAKVNGQQISRSQLEQAV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E     + +G   +   A    + +++L  L+    LDQ+ + +GL     ++   I 
Sbjct: 60  QNERNRQQEAMGEQFSQLAANEGYMRQQVLSQLIDETLLDQYADKLGLAISDDQIKQAIF 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F  +D KF +  F S +   G++  +Y     K L    ++    G         D
Sbjct: 120 AILAFRTED-KFDNAKFRSLIGNMGLSPDQYATLMRKQLLTQQLIQGIGGTGFLLPAETD 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      + R     +     + A    S+  +   +  YK+ Y +PE  ++SYI  D  
Sbjct: 179 RLLEVAVQTREARLAMFAIAALAAKQTASDDEIQASYNAYKNQYLSPEAFKVSYIPMDAE 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
             + K  +   E+QA Y+++ +++  P  +    +   ++ +A++  + L++G  F  LA
Sbjct: 239 TMQTKTTVDEQEIQAWYDQHHDQFTVPGRKRYSIIQSKSENDANDWLKQLQQGADFASLA 298

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +     +     G     ++ D    D +   +L++KG  + VI  S G++I  + +++P
Sbjct: 299 KAHSTDVVSAKNGG-DIGWMSDSDTLDELKQANLSQKGQLSGVIKSSVGFLIIRLDDMQP 357

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
           +       V  ++A +++  KA +      +++ +  A     + ++  E    I     
Sbjct: 358 AQVSPLSAVHDEVAAKVKQEKAIDAYYALQQKVSD--AASNDNETLASAETAAGIKAQQT 415

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
           D+   D    +V A    + +   +F      S    + +       ++I E  P R + 
Sbjct: 416 DWFSHD----DVPAALNYDAVKQVLFQGSLLGSNSDVITVDGNRSFVIRIAEHRPERVQP 471

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
           LE+V   V+++ K  K  E+    A + ++   ++     +  +  G S     Q +  +
Sbjct: 472 LEDVRARVEQEVKRQKALEQARVDAEKALVALKQDKGT--EALQAAGLSFSAPQQFDSAN 529

Query: 539 NENKFFGYDGISQVFSGPVEMVK------CFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
                 G      VF+ P               +  +  +       +    Q++ +F+ 
Sbjct: 530 Q-----GDPLAQTVFTLPQPPHGKSSYGMASNAQGDIVLIALDSVTPRTLEEQQRKQFVD 584

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
            L Q M     D+++  L+++  + +    
Sbjct: 585 QLNQGMTGVAFDALLENLRAEAKIKMGAAA 614


>gi|300715595|ref|YP_003740398.1| peptidyl-prolyl cis-trans isomerase D [Erwinia billingiae Eb661]
 gi|299061431|emb|CAX58543.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia billingiae Eb661]
          Length = 623

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 115/634 (18%), Positives = 251/634 (39%), Gaps = 20/634 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R AS   V KI L ++ + F++ G+ + L   +G      V  Q++  +   N++
Sbjct: 1   MMDNLRAASNHVVLKIILALIILSFVLTGVGNYLIGGNG-DYAAKVNGQEISRAQLENAF 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E     Q++G   +      A    + ++ L  LV  + L  + +D+GL     ++  
Sbjct: 60  SNERSRQQQQLGEQFSQLAGNPAYIQQIRQQALSQLVDESLLTGYAKDLGLAISDDQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     F   + KF +  ++  + + G    +Y +   K L+   ++            
Sbjct: 120 AIFNQSAFQ-TNGKFDNTKYLGLINQMGFTADQYAEALRKQLTTQQLIAAVTNTDFMLTG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D       + R V    +N   + A    S   +  ++E+ K+N+ +PE  R+SYI  
Sbjct: 179 ETDALAALVSQERLVREATINVAALAAKQTVSAEEIKNYYEQNKNNFMSPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D    ++    S  ++Q+ Y++++  Y  P+      +    + EA  A  ++KKG  F 
Sbjct: 239 DAASMQE--TASEADIQSWYDQHQADYTQPQRSRYSIIQTKTEAEAQSALDAMKKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+        +   +G    +  PD         L +KG  + VI  S G+++A +
Sbjct: 297 ALAKEKSADPISARNGGDMGWLEPDTTPD---ELKSAGLKEKGQLSGVIKSSVGFIVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           ++++P        V  DIA +++  KA +   +  +++ +  A     + ++  E+   +
Sbjct: 354 TDVQPQQIKPLAAVHDDIAAKVKQEKAIDAYYKLQQKVSD--AATNDNESLAGAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 +   D    E+     ++ +    + G++     +  +   DG   +V ++ E 
Sbjct: 412 KAVETGWFSHDNPPAELNFKQVEQAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRVSEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L++V   +    KT K   +  ++A++L+ +  K GK   +  K    S  + 
Sbjct: 472 KPEAVKPLDQVTAQITDTLKTQKAQAQAKAQADKLLADL-KAGKG-DEAMKAANLSFGSQ 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
             + R   +        +S               E  +  V      S   P  +K   +
Sbjct: 530 KTLTRNGQDAVTQAAFTMSLPAKDKPSYATSEDGEGNVLLVALDQVRSGSMPDAQKKAMV 589

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             +TQ   +   +++++ L+ +  +        +
Sbjct: 590 QGITQNNAQITFEAMLSNLRKEAKIKYGAAAQAQ 623


>gi|17546434|ref|NP_519836.1| peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Ralstonia solanacearum GMI1000]
 gi|17428732|emb|CAD15417.1| probable peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 648

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/649 (16%), Positives = 236/649 (36%), Gaps = 34/649 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  + L+++F  F+ +G+      + GS     VG   +  S      
Sbjct: 1   MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + Q +G   +  +     + + +LD ++    +        L     +V   I 
Sbjct: 60  REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVMVNEASRANLSVADSKVRETIE 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + P        D KF  D ++  LA +G+  +++       L    +    V        
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L+D+      + R V  ++       A     +  +  +++ ++  +   E  +  Y++F
Sbjct: 180 LVDRLIEARDQQREVQALLFKPADYAAKVTVDDKAIQAYYDAHQQEFAVLEQVKAEYVVF 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
              E  K+I ++ ++L+  Y++N  ++ + E R    ++               +K A+E
Sbjct: 240 SGEEMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299

Query: 286 AFQSLKK-GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               ++K    F +LA++             LG  +K         +++F+L + GD + 
Sbjct: 300 VLAEVRKSPGSFAELAKKYSGDPGSAAQGGELGFLAKGATV-PPFENALFALKQPGDISD 358

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FG+ I  + ++K     S   VK ++  ++R   A++K  E        +     
Sbjct: 359 VVESDFGFHIIKLEDVKGGGVQSLDAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+  ++ + K+       V        G         E++L  +F  D   +  +T  V 
Sbjct: 419 SLKPVADKLKLQIQTADHVTRVPNPALGNSPVN---NEKVLKALFADDVTKNHRNTQAVQ 475

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           +   + +  +  E  PA  +KL +V   VK      ++A  ++ KA +  L   K+  + 
Sbjct: 476 VGPTTLVAARAVEYRPATVKKLADVREQVKAKVLAEQSA-ALAKKAGEEKLAALKQSNSA 534

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
              G     S                      +     PV +      +    Y + KV 
Sbjct: 535 EGFGTAQTLSRQQAQG-----TPPAALVAILRADAAKLPVTIGVDLGAQGYALYRINKVL 589

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                    +      LTQ   +   ++    LK++  V ++ +++   
Sbjct: 590 PPANVDPARRAADAQQLTQAAGQADFNAYYEALKARSKVKINGSVVDAA 638


>gi|227358098|ref|ZP_03842440.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis ATCC
           29906]
 gi|227161833|gb|EEI46865.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis ATCC
           29906]
          Length = 625

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 132/633 (20%), Positives = 269/633 (42%), Gaps = 29/633 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ IR  +     KI L V+ + F++ G+   LFS SG +    V   K+  +    ++
Sbjct: 1   MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFS-SGVNDAAEVNGYKISRAQLEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVG---LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +Q    + + +G    S  +   G   + ++ L+ L++ A LDQF +++G+ A   ++  
Sbjct: 60  QQRRAQLQKDMGDNFASLASSDEGQKMIRQQALNVLINQALLDQFAQELGISAGDQQIRD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +  +V  L    I+   + +   + L    +     G       
Sbjct: 120 AIFALPYFQ-TDGKFDNKKYVELLTANNIDADAFAEGIRQNLINQQLRYSIQGTDFALES 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +        ++R+V    L+ +        S+  L  ++++    + AP   ++SYI  
Sbjct: 179 EVKDFAGLMLQSRNVRLASLDIQPFLEKETVSDEELKAFYDQNTSMFIAPAQVKVSYIQL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           +  +    I IS+DE++A Y+ N  ++  P  +    LV  ++  A EA  +LK G  F+
Sbjct: 239 EAQKDLSNITISDDEVKAYYDSNISEFTVPGQKKYSLLVLADETAAKEAEDALKNGADFV 298

Query: 298 QLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            L +E+      +  + SLG  +        LA++  SL +KG  +  +  S GY I  +
Sbjct: 299 TLVKEKSIDTFSAKQNGSLGWITIGQEL-PELANA--SLTEKGQISQPVKISNGYAIFRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            ++KPS    F ++K D+  +MR  KA +      +++ +  A     D ++   K  ++
Sbjct: 356 DDMKPSVVKPFDDIKADLLVKMRENKAIDDFFALQQKVSQ--AASNDNDTLATAAKAGNV 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIKES 471
            +   D+  ++     +      + +       D+  +      V L + S   V+++  
Sbjct: 414 TVINTDWFDENNVPAALNNEKLTQLIFGGSLVDDNGPTGMNSDMVTLGNDSAYIVRVEGY 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            PA  + L++V   V    K  K ++ ++++A +L+    KEGK      K    S    
Sbjct: 474 KPASTQPLDKVRDKVITLVKQQKASQAMNAQAQKLLAAL-KEGKG-EAALKEANISFGEV 531

Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIEN--GLSYVVFKVTNSKVG-PVQE 586
             +      +          +F+   P E  K + + N  G   V+ ++ +   G P  E
Sbjct: 532 ESVVHSSATDPIQS-----AIFAMPKPAEGKKEYGMSNVPGSKVVLIQLDSVTDGKPTAE 586

Query: 587 KDKFISYL-TQMMNKDLLDSVIAYLKSQYSVTV 618
           + +F++ L    M ++ L  +++ L+ +  + +
Sbjct: 587 QLEFMTNLYRAQMGEEALQLMLSDLREKAKIEI 619


>gi|260428591|ref|ZP_05782570.1| putative peptidyl-prolyl cis-trans isomerse D [Citreicella sp.
           SE45]
 gi|260423083|gb|EEX16334.1| putative peptidyl-prolyl cis-trans isomerse D [Citreicella sp.
           SE45]
          Length = 615

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 124/629 (19%), Positives = 255/629 (40%), Gaps = 24/629 (3%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           + +        I   VL   F+ +G    +    G+ ++ SVG   +  + +  + + E+
Sbjct: 1   MARGKSGITKYIVWGVLIASFVGFGAFGTVNFTGGAGSIGSVGDTTIETTDYARALQNEM 60

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             +  + G  V  E+AR  GL  ++L  +V+ A LD+    +G+     RV  ++     
Sbjct: 61  RAVEAQTGQPVTLEQARQFGLTDQVLAQVVTNAALDEETRQLGILVGDERVAEDLRNVQA 120

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           FHG D  F    +   L   G+ E E+ D   +  +R+ +    + G    +  ++    
Sbjct: 121 FHGPDGNFDRSAYSYALQNAGLKEAEFEDSLRQESARSILQAAVLSGTTLPDTYVNTLLG 180

Query: 185 FYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
           +  E R   +  L+   +   +  P++  L  W+++  D +  PE K I+Y         
Sbjct: 181 WVGETRDFTWAKLDRDALTTGLPVPTDEELQAWYDENIDQFTLPETKVITYAWLTPDMIV 240

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEE 302
             +E+    L+  YE+   ++  PE R VE+LVF ++ EA  A   +  G+  F  +  E
Sbjct: 241 DTVEVDEQALRDAYEERHAEFNMPERRLVERLVFSSEDEAQSAADRIASGETDFEGVVAE 300

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +G ++ D  +G  ++  + +    D++F  A+ G        + G  +  V+ +      
Sbjct: 301 RGLAIIDTDMGDVTRASLGEA--GDAVFG-AEVGAVVGPEPTNLGPALFRVNGVLAEQVT 357

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
            F+E   D+ + + + +A   ++   + L++ LA G +++E+S+      ++L  ++++ 
Sbjct: 358 PFEEAVPDLRDALVLDRARRVIEGMSQDLDDELAGGATLEELSQD---TDMELGQIEWSE 414

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
               G  +A      +    V   D P   D    L DG    +++ E         E+V
Sbjct: 415 TSDTG--IAGYEAFREAAQAVQDADYPAIDD----LGDGGVFALRLDEQRDPAPAPFEDV 468

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
             +V + W+  +  E + ++A +L    S  G +F D     G S    + + R +   +
Sbjct: 469 RDEVAQLWEQDQATEALVAQAEELATAIS-GGGSFED----SGLSPTQESGLTR-NQPIE 522

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYV----VFKVTNSKVGPVQEKDKFISYLTQMM 598
                 +  VF+      +  P       V    V  V        Q  D+        +
Sbjct: 523 GLPAAILEAVFTMEPGEARALPGNGAALVVRLDGVTPVDMDAPQVTQVGDQLRDQAANSV 582

Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
             D+  ++   ++S+  V+V  + +   L
Sbjct: 583 ANDIFRALNTDIQSRAGVSVDQSAVNAVL 611


>gi|284006425|emb|CBA71661.1| peptidyl-prolyl cis-trans isomerase D [Arsenophonus nasoniae]
          Length = 623

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 122/635 (19%), Positives = 259/635 (40%), Gaps = 29/635 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ + F++ G+   L   S S+ V  V    +       ++
Sbjct: 1   MMDNLRTAANSLVLKIVFVIIILSFVLTGVGSYLIGGS-SNHVAKVNGTAISQVQLQQAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +QE  ++ +++G       S       L ++ L+ L+    L+Q+   +GL A   +V  
Sbjct: 60  QQEKQVLQERLGDQFAEIASSEQGMQMLRRQALERLIGVTLLNQYSNQLGLTASDNQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           +I   P+F   D  F  + + + L++  +N  +      + L    +  M++        
Sbjct: 120 DIYNMPIFQ-TDGHFDSEKYRTILSQHNVNADDLAQEIRQNLINRQLSKMYITDEFVLPE 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +    +   + R V    L+  +  +    ++  L  ++  +++++ +PE  ++SYI  
Sbjct: 179 EVKSYAQLLLQQREVKTATLSLANYQSKQTVTDKELQDYYNAHQNSFISPEQVQVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D   + + + + ++EL+  YE+N   +  P  +    +  P +KEAD   +SL  G  F 
Sbjct: 239 DAASQRENVAVKDEELKNYYEQNIANFTQPAQKHYSMIQLPTEKEADSVVKSLAGGADFK 298

Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           QL  E+        +  +LG       P   +     +L KKG  + VI  +  Y+I  +
Sbjct: 299 QLVAEKSTDKFSAANHGALGWMEATSTPSEII---AANLTKKGQISAVIKSASNYIIFRL 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +IKP     FQ VK +IAN ++  KA        +      A     + ++  EK   I
Sbjct: 356 DDIKPEVVKPFQSVKTEIANTLKNEKAINAFYSLQQTAS--RAAMDDNESLTAAEKATGI 413

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
                 +  ++   +E+      + +    +  K+ P   +  V   DG     +++++ 
Sbjct: 414 KAVTTGWFSRNNLPEEIRFDKVADTIFNGNLVDKNGPTGINSDVINVDGDRAFVIRVEKY 473

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   +  +EV   V +  K  K  +E+ ++ N+L+    K+G     + K LG +    
Sbjct: 474 KPQVTQPFDEVKKTVAELVKLNKATKEMEAEGNKLLTAL-KQGAGEAALAK-LGINFGDA 531

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKC----FPIENGLSYVVFKVTNSKVGPV--Q 585
             I R +  +       +  +F  P+            +   + V+ ++     G    +
Sbjct: 532 KIIERFEQNDVL-----VEPIFQMPIPKENTPTYFSTKDAKNNLVIIQLIKVTQGQPTDE 586

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           E   F      ++   +++S++  L+    V +  
Sbjct: 587 ELKVFSQRYKMILGNVMMESLMLNLRDSAKVDLGR 621


>gi|296157831|ref|ZP_06840665.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           Ch1-1]
 gi|295892077|gb|EFG71861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           Ch1-1]
          Length = 645

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/647 (16%), Positives = 238/647 (36%), Gaps = 47/647 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + LV +       G+         S+ V SV   K+  + + ++ 
Sbjct: 1   MLDFFRNHKRLMMFMLILV-IVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDAM 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L    Q +G   + +   +     ++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQLDRARQMLGAQFDMKSFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     D +   LA +G+   +Y +     ++   +     G    S  
Sbjct: 120 NDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKT 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L         + R V  I  + R   A   P++A L  +++ +++++  P    I Y++ 
Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285
                   ++ S+ +L+  Y+ N   Y          ++                ++A+E
Sbjct: 240 SPATLATSVQPSDADLKKYYDDNIAHYRVEGQVRASHILIAAPKDASAADKAKAKQKAEE 299

Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339
               +K     F QLA    ++ G +     LG F +  I    +  D++F+L KK + +
Sbjct: 300 LLAQIKAHPDQFAQLAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            ++   FGY I  V+++KP+ T  F EVK  I+  ++   AS+   +D +     +    
Sbjct: 359 GIVQTDFGYHIVKVTDVKPAITKPFDEVKDQISKDLKTQLASKAFTDDSEGFTSIVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHTVA 457
            S+   + + K+      +          K     P      L  VF  D   ++++T A
Sbjct: 419 KSLQPAADKYKLQLQTATVTPQ----PDPKLAPDSPLNNAKFLAAVFANDAVTARNNTQA 474

Query: 458 LPDGS--YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           +  G    +  ++ +   A    L+ V   V++    V++ E         + ++ K   
Sbjct: 475 IDVGGNTLIAARVTDYKAAAVPSLDAVKDAVRQKVIAVQSNEAAHKDGAAKLADFEKS-- 532

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVV 573
                     ++   ++ +    N+ +      +S ++    + +  +   +     Y +
Sbjct: 533 ---------KSTAGFSSPLKVSRNDAQGVPPAALSAIYKADAQKLPAYVGVDLGDDGYAI 583

Query: 574 FKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           ++V     G   +  +       + Q+  +   ++ +  L+++  V 
Sbjct: 584 YRVNAVVAGTTVDPQRLAAAQQQIAQVDAQSEAEAYLEALRARSKVK 630


>gi|238783605|ref|ZP_04627626.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia bercovieri ATCC
           43970]
 gi|238715483|gb|EEQ07474.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia bercovieri ATCC
           43970]
          Length = 607

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 126/619 (20%), Positives = 258/619 (41%), Gaps = 29/619 (4%)

Query: 22  FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS---E 78
            + F++ G+   L   S       V  Q++  +    + + E G + Q++G   ++    
Sbjct: 1   MLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAVQSERGRLQQQLGEQFSALAAN 59

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
                 L +++L  LV+   LDQ+ + +GL A   +V   I ++P F   DNKF ++ ++
Sbjct: 60  EGYMQQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKDAIRQAPYFQ-TDNKFDNNKYL 118

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
             + R G    ++     + L    ++  F        +          + R V    ++
Sbjct: 119 ELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPIEAQAMSELILQQREVRLATID 178

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
            + + A    ++  L  ++++ K+++ APE  +IS+I  D    + KI ++ +++ A Y+
Sbjct: 179 LKALQAQQKVTDEELKAYYDQNKNSFIAPEQMKISFIAMDAAAMQDKITVTEEDIAAYYD 238

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGS 314
           ++K  Y  PE R    + F N+ EA  A + LKKG  F  +A+E+   +    +   LG 
Sbjct: 239 QHKSSYTQPERRNYSVIQFKNEAEAKAALEELKKGADFAAMAKEKSTDIISRKNGGDLGW 298

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
              E   D         L++KG  + V+  S GY+I  +++IKP       EV   +A Q
Sbjct: 299 LEPETTAD---ELKQAKLSEKGQLSDVVKSSVGYLIVRLNDIKPEQVKPLSEVHDALAKQ 355

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
           ++  KA +      +++ E  A  +  + ++  E+         D+  +D    EV   P
Sbjct: 356 VKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAKHTDWFTRDSIPAEVNFKP 413

Query: 435 YKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPARDRKLEEVLTDVKKDWKT 492
             + +    + G++     +  V   DG     ++I    P      E+V   V +  K 
Sbjct: 414 VAQAIFDGGLIGENGAPGSNSDVITVDGDRAFVIRIDGHKPEGIEPFEQVRDQVAELVKR 473

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
            K  +       +++    K+GK   +  K  G S      ++R  ++++      +  +
Sbjct: 474 QKAEQLARVDGEKILTAL-KQGKG-EEAMKAAGISFGEKKTLSRAPDDDQL-----VQTI 526

Query: 553 FSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSV 606
           F+ P       V     +   + V+ ++ +   G  P  E   FI+ + +  +    D++
Sbjct: 527 FTLPHPQKDQPVYGLSQDRQDNIVLIELLSVTAGKLPEGEMKTFIAKMQEGSSGVTFDAL 586

Query: 607 IAYLKSQYSVTVHDNLIQR 625
           +A L  Q ++ +     Q+
Sbjct: 587 MANLHKQATIKMGPAEQQQ 605


>gi|170692414|ref|ZP_02883577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           graminis C4D1M]
 gi|170142844|gb|EDT11009.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           graminis C4D1M]
          Length = 646

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/645 (15%), Positives = 232/645 (35%), Gaps = 41/645 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + LV +       G+         S+ V SV   K+  + + N+ 
Sbjct: 1   MLDFFRNHKRLMMFMLILV-IVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDNAM 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L    Q +G   + +   +     ++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQLDRARQMLGAQFDIKAFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     D +   LA +G+   +Y +     ++   +     G    S  
Sbjct: 120 NDPVISSLKNPDGSIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPAAIQGSAFTSKT 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L         + R V  I  + R   A   P++A L  +++ +++++  P    I Y++ 
Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285
                   ++ ++ EL+  Y+ N   Y +        ++                ++ADE
Sbjct: 240 SPATVAASVQPADAELKKYYDDNIAHYRTEGQVRASHILIAAPKDASAADKAKAKQKADE 299

Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339
               +K     F Q+A    ++ G +     LG F +  I    +  D++F+L KK + +
Sbjct: 300 LLAQIKAHPDQFAQIAQQNSQDPGSAAKGGDLGYFGRGMIAGGKAFDDAVFAL-KKDEVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            ++   FGY I  V+++KP+ T  F EVK  IA  ++   AS+   +D +     +    
Sbjct: 359 GIVQTDFGYHIVKVTDVKPAATKPFDEVKDQIARDLKTQLASKAFSDDSEGFTSIVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            S+   + + K+      +       +              +F     +   +    + +
Sbjct: 419 KSLQPAADKYKLQLQTATVTPQPDPKLPPDSPLNNAKFLAAVFANDSVN-ARNNTQAIDV 477

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
              + +  ++ +   A    L+ +   V++     ++ E         + E  K      
Sbjct: 478 GGNTLIAARVTDYKAAAVPALDAIKDTVRQKVIAAQSNEAAHKDGIAKLAELEKS----- 532

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKV 576
                  A+   ++ +    N+ +      +S ++    + +  +   +     Y +++V
Sbjct: 533 ------KATTGFSSPLKVSRNDAQGMPPAALSAIYKADAQKLPAYVGVDLGDDGYAIYRV 586

Query: 577 TNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                G     Q        + Q+ ++   ++ +  L+++  V +
Sbjct: 587 NAVVTGGAVDPQRLAAAQQQIAQVQSQSEAEAYVEALRARSKVKL 631


>gi|114563758|ref|YP_751271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
 gi|114335051|gb|ABI72433.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
          Length = 625

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 118/636 (18%), Positives = 250/636 (39%), Gaps = 35/636 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  VAK  LV++ + F   G+S  L S +G      V   ++  +    ++
Sbjct: 1   MLEKIREGSQGIVAKTILVLVILSFAFAGVSSYLGSNTG-VPAAVVNGDEIGANELEQAF 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   I Q++G +  +   + +   G+ + +LD L++   +DQ    +GL     ++  
Sbjct: 60  QNERSRIEQQLGEMFTALAADDSYMNGIKQGVLDRLIADKLIDQAANKLGLRVSDEQIKK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D +F ++ +++ L + G     + +     ++R  ++   VG     + 
Sbjct: 120 AIIEEPAFQ-TDGQFDNERYLAVLRQLGYQTTSFRNMMRVDMTRRQLLNALVGSEFVLDG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              Q      + R + Y+V+++    +    ++     +++     Y +PE   + Y+  
Sbjct: 179 EAKQLAEVQGQTRDIRYLVVDSTPFLSTVSVADEEAQSYYDANISQYMSPEKVSLEYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
           +V +  K  E S++E++  YE+NK +Y + E R    +          ++ +AD     L
Sbjct: 239 NVADMAKSSETSDEEVKTYYEENKAQYQTAEKRLAAHIFVAATDDDSADKAKADAIEAKL 298

Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G+ F  +A+              L  F +  + D +  +++F L K    + ++   F
Sbjct: 299 TAGEDFADVAKADSDDQLSAQQGGKLDWFEQG-VMDPAFDEALFGLQKD-QVSSIVKSEF 356

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           GY I  + +++ S   +F+ VK  I  Q++  KA +       +L +        D ++ 
Sbjct: 357 GYHIIKLLDLQASQATAFENVKAKIVAQLQEKKALDVFYSLQTKLADTSYE--IPDTLAE 414

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
             + V+  +       +D    +V A     + +   F      S      + L     +
Sbjct: 415 TAQAVNAKVQSTQLFSRD----DVPAKFNNPEFIKAAFSDQVLASGLNSDVIELAPNHVV 470

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            +++K+   A     +EV   + +  K  K  +    KA + + +  K G +     K  
Sbjct: 471 VIRMKKHQTAGVMSFDEVKAGIVERLKQDKANDGARDKAAEYMAQL-KAGND-----KLT 524

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
           GASL T  ++ R + +      +   ++ +     V          Y V  V        
Sbjct: 525 GASLTTLAKLGRFNQDIDQAITNKAFKIAAPAENSVTIDTAALATGYAVIVVDKVNKAEG 584

Query: 585 QEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                 +     +    ++    +V+A LK+   + 
Sbjct: 585 INDNLINTLKQRIAPQYSEADYRAVVASLKADAEIE 620


>gi|88860449|ref|ZP_01135087.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Pseudoalteromonas tunicata D2]
 gi|88817647|gb|EAR27464.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Pseudoalteromonas tunicata D2]
          Length = 633

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 120/630 (19%), Positives = 241/630 (38%), Gaps = 27/630 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+   AKI L ++ + F + G+   L   +    V  V  QK+  ++F  ++
Sbjct: 1   MLEKIREGSQGLTAKIILGLVILSFALAGIGSYL-GQTTEKPVAVVNGQKISQTTFARAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q+ G   N   S+      + + ++D LV      Q   ++GL      +  
Sbjct: 60  ENERSRLEQQFGEYFNQIASDPTYMARVREGVIDRLVQQELQTQLANELGLRISDEAIKE 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI   P F     +FS+D ++  + +       + ++    ++R+ +V            
Sbjct: 120 EIRTLPYF-NIGGQFSNDRYLQVIRQMNFQPDTFRNYLRTEMTRSQLVTAVAASDFALPN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +    +   + R +DY++L    V      +   ++ ++   +  + + E   + Y+  
Sbjct: 179 EMVTISQLQTQVRDLDYVLLTADQVSKDITVTEQEISDYYTLNQSQFLSQEQVSVEYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
           +         +++DE+ A Y  NK +Y  PE R V  ++         ++ +A +    L
Sbjct: 239 NAETLPVVKAVTDDEILALYNDNKAQYVEPERRRVAHILVDLGDDEAASEAKAQDLLAKL 298

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           K G  F QLA+     +    +   L    ++ + D +  ++ FSLA KGD + V+   F
Sbjct: 299 KAGADFAQLAQSDSSDIVSAENGGDLDWIDRD-MMDPAFEEAAFSLAAKGDISDVVKSEF 357

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ I  +++++     +   VK ++  ++     +E   E   RL E        D +S 
Sbjct: 358 GFHIIKLTDLQAEQIKTLDMVKDELTARLEQDHKTEHFYELQTRLAELAFEVA--DSLSE 415

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
               V  ++       +      +      +        +D        + L +   + +
Sbjct: 416 AATAVEQEVKSTALFSRFDAPAPLNDAKVLDAAFSVELLEDKV--NSELIELGNEHVVVL 473

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++KE  PA  + L EV   +K      K  E  +++ ++L  + S  G +  D+      
Sbjct: 474 RVKEHKPAATKALAEVSDQIKAVLVKQKANEVNATRGDELYAKLS-SGTSLADLAAEQSL 532

Query: 527 SLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV--FKVTNSKVGP 583
            +     I R   N       D           +V    + NG   +V    V N+ V  
Sbjct: 533 QVEQARDIKRNAYNLVPGLAKDVFQMAHPVDKPVVNRITLANGDVALVSLLAVKNAPVTE 592

Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
           +  + K      Q+    L+   +  LK Q
Sbjct: 593 LDARTKESINAEQINRNYLV--FVDALKQQ 620


>gi|207724194|ref|YP_002254592.1| peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum MolK2]
 gi|206589405|emb|CAQ36367.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum
           MolK2]
          Length = 648

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 104/654 (15%), Positives = 238/654 (36%), Gaps = 44/654 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  + L+++F  F+ +G+      + GS     VG   +  S      
Sbjct: 1   MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDARV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + Q +G   +  +     + + +LD ++    +        L     +V   I 
Sbjct: 60  REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRMMVNEASRTNLSVADTKVRETIE 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + P        D KF  D ++  LA +G+  +++       L    +    V        
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L+D+      + R V  ++L      +     +  +  +++ ++  +  PE  +  Y++F
Sbjct: 180 LVDRLIEARDQQREVQALLLKPADYASKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
              +  K+I ++ ++L+  Y++N  ++ + E R    ++               +K A+E
Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299

Query: 286 AFQSLKK-GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               ++K    F +LA++             LG  +K          ++F+L + GD + 
Sbjct: 300 VLAEVRKTPGNFAELAKKYSGDPGSAAQGGELGFLAKGATV-PQFDSALFALKQPGDISD 358

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FG+ I  +  +K     S + VK ++  ++R   A++K  E        +     
Sbjct: 359 VVQSDFGFHIIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+  ++ + K+       V        G         +++L  +F  D   +  +T  V 
Sbjct: 419 SLKPVADKLKLQVQTADNVTRVPNPALGSSPIN---NDKVLKALFTDDVIKNHRNTQAVQ 475

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           +   + +  ++ E  PA  +KL +V   VK      ++A  ++ KA +  L   K+  + 
Sbjct: 476 VGPTTLVAARVVEHRPASVKKLADVREQVKAKVLAEQSA-ALAKKAGEEKLAALKQSNSA 534

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
              G     S                     ++ +       +      +     Y +++
Sbjct: 535 EGFGAAQMISRQQAQG----------TPPAALAAILRADATKLPATIGVDLGAQGYALYR 584

Query: 576 VTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
           +             +      L Q   +  L++    LK++  V ++  +I   
Sbjct: 585 INKVLPPANVDPARRAADAQQLAQADGQADLNAYYEALKARSKVKINTTVIDAA 638


>gi|187923900|ref|YP_001895542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phytofirmans PsJN]
 gi|187715094|gb|ACD16318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phytofirmans PsJN]
          Length = 645

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/648 (16%), Positives = 239/648 (36%), Gaps = 47/648 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + LV +       G+         S+ V SV   K+  + + ++ 
Sbjct: 1   MLDFFRNHKRLMMFMLILV-IVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDAM 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L    Q +G   + +   +     ++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQLDRARQMLGAQFDMKSFDTPERRAQMLDGLIEQRVLADETQRLHLTASDDAVRRVLM 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     D +   LA +G+   +Y +     ++   +     G    S  
Sbjct: 120 SDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKT 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L         + R V  I  + R   A   P++A L  +++ +++ +  P    I Y++ 
Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNEFATPATATIQYVVM 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285
                    + S+ +L+  Y+ N   Y +        ++                ++A+E
Sbjct: 240 SPATLAASAQPSDADLKKYYDDNIAHYRTDGQVRASHILIAAPKDASAADKAKAKQKAEE 299

Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339
               +K     F Q+A    ++ G +     LG F +  I    +  D++F+L KK + +
Sbjct: 300 LLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGKAFDDAVFAL-KKDEVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            ++   FGY I  V+++KP+ T  F EVK  I+  ++   AS+   +D +     +    
Sbjct: 359 GIVQTDFGYHIVKVTDVKPAVTKPFDEVKDQISKDLKAQLASKAFTDDSEGFTSIVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHTVA 457
            S+   + + K+      +          K     P      L  VF  D   ++++T A
Sbjct: 419 KSLQPAADKYKLQVQTATVTPQ----PDPKLAPDSPLNNAKFLAAVFASDATTARNNTQA 474

Query: 458 LPDGS--YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           +  G    +  ++ +   A    L+ V   V++    V++ E         + E+ K   
Sbjct: 475 IDVGGNTLIAARVTDYKAAAVPALDAVKDAVRQKLIAVQSNEAAHKDGVAKLAEFEKS-- 532

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVV 573
                     ++   ++ +    N+ +      +S ++    + +  +   +     Y +
Sbjct: 533 ---------KSTAGFSSPLKVSRNDAQGVPPAALSAIYKADAQKLPAYVGVDLGDDGYAI 583

Query: 574 FKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           ++V +   G   +  +       + Q+  +   ++ +  ++++  V +
Sbjct: 584 YRVNSVVAGTTVDPQRLAAAQQQIAQVDAQSEAEAYVEAVRARSKVKL 631


>gi|288941155|ref|YP_003443395.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium
           vinosum DSM 180]
 gi|288896527|gb|ADC62363.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium
           vinosum DSM 180]
          Length = 645

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/646 (18%), Positives = 252/646 (39%), Gaps = 41/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR+ ++ W+A   ++++ +PF +WG+   L  V G     +V   ++P        
Sbjct: 1   MLQTIRERAQGWIAWAIVILISIPFALWGIQSYL-GVGGEPIAATVNGVEIPARELDRRV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++    + +++G   +        L  ++L+ L+  A L   +  +GL      V  +I 
Sbjct: 60  QETRFELRERLGAAYDPAAFDDQRLRAEVLETLIQEALLMDVVGRLGLRVSDQEVQMQIL 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  +  +F  D +   L  +G+    Y     + +S T ++         +   LD
Sbjct: 120 SDPAFVSE-GRFDKDTYERLLRFQGLTPAMYEAQLRQKMSATQLIRAVSSSELATRAELD 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             KR   + R + Y+ L             A +T +++  +  +++PE  R+ Y++ D  
Sbjct: 179 TYKRLMGQKREISYLRLPLAEHRTDEPIDEARITAYYDSNRARFQSPEQVRLDYLVLDTD 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADEAFQ 288
               K+E+S ++L+  Y  ++ ++  PE R V  L+                 E      
Sbjct: 239 ALSSKVEVSEEDLRQLYASDQARFAQPERREVRHLLLKVDADADEAAARAVLDEIQAIRA 298

Query: 289 SLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            ++ G+ F +LA+    + G +    SLG      +   +   + F+L K G+ +  +  
Sbjct: 299 RIQAGESFEELAKTLSQDPGSAAKGGSLGVIESGIMV-PAFDQAAFAL-KTGELSEPVRT 356

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FGY +  V  I PS    F++V++ +  ++   +A     E  +RL        S D +
Sbjct: 357 PFGYHLIEVVQILPSKAKPFEDVREPLRAELAKQRAEGLFYELAERLANISYE--SPDSL 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-SY 463
               + + + +   D+ G++   + + + P      F         + D      D    
Sbjct: 415 DPAAEALGLTIQHSDWIGRNGGDEGLLSHPKVMAAAFSEDVLVGGNNSDLIEPERDRLQA 474

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           + +++ E   A  + L+EV  ++    +  +      S   + + E  ++G  +   G+ 
Sbjct: 475 IVLRVAEHREASVKPLDEVREEIVAAIRDEQARAAAKSA-AEALAEKLRDGSGWSVAGEE 533

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTNS 579
           L     +   ++R   E        +   F  PV       +     +    VV ++T  
Sbjct: 534 LKPE--SPGLVSRQSAE---VPAGVLDAAFKLPVPTDGAVSVGTAILDDSDAVVVRLTKV 588

Query: 580 KVGPVQEKDKFIS--------YLTQMMNKDLLDSVIAYLKSQYSVT 617
           + G V+   +            +TQ+M +    +V+  ++S+  + 
Sbjct: 589 EDGQVEADGEGGEDGFSAESFIITQIMGRQAYTNVLEDMESRAKIE 634


>gi|159044344|ref|YP_001533138.1| putative peptidyl-prolyl cis-trans isomerase [Dinoroseobacter
           shibae DFL 12]
 gi|157912104|gb|ABV93537.1| putative peptidyl-prolyl cis-trans isomerase [Dinoroseobacter
           shibae DFL 12]
          Length = 614

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 127/628 (20%), Positives = 266/628 (42%), Gaps = 29/628 (4%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           ++  +  +   I L +L V    +G+S        ++ V SVG   +    +  + + +L
Sbjct: 1   MKGKTSNFFMFILLGLLIVALAGFGISSF---GGSNARVGSVGDTDITVDEYARALQTQL 57

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
               Q+ G  V+   AR +GLD+++L  LV+ A +D     +G+     RV  +I   P 
Sbjct: 58  RAAGQQRGRAVSMAEARELGLDRQVLAQLVNTAAIDNEAAKLGVSVGDMRVAEQIQTIPA 117

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F G    F  + +   L +  ++ +E+        +R  +    +GG+R           
Sbjct: 118 FSGIGGGFDREAYEFTLQQNNLSPEEFEADVRNEAARNLLQAAVIGGLRAPQAYTGTLYD 177

Query: 185 FYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
           F    R   +  +    V    A P++A L  +++     + APE + I+Y+L      +
Sbjct: 178 FIAARRDFTWAEITPDLVALTQAMPTDAELRAFYDANPAAFTAPETREITYVLLSPEMMQ 237

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEE 302
            ++  S ++L+A Y++    Y  PE R ++++VF  + +A EA  +L  G   F +L   
Sbjct: 238 DQVSPSEEDLRAAYDRAASVYVQPERRLLDRVVFGTEAQAAEAKAALDSGAQSFEELLAA 297

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +  SL D+ LG  +++ + D ++A+ +F   + G     +  + G  +  ++    +   
Sbjct: 298 RDLSLEDVDLGEVARDDLDD-AVAEVVFGDQETG-IVGPVRTALGPALFRINAALAAQVT 355

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
           +F+E + ++   +    A   V ++ + L++ LA G +++E++        +L  +    
Sbjct: 356 TFEEARDELTAALAGDAARRAVADEIEALDDLLAGGATLEELAAD---TPAELGELSLTA 412

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
              +G  +AA P    L   +   D P        L DG    +++ E +P R    +EV
Sbjct: 413 TTTEG--IAAYPEVRALANTLSEGDFP----EIETLDDGGVFALRLDEVVPPRLLPFDEV 466

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
             DV   W+  +  + +S++A + V E  + G++F D     G        + R      
Sbjct: 467 REDVVAGWEAQRLQDALSAEAAR-VAEALRGGESFAD----QGLERQVETGLTREAFIEG 521

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK------FISYLTQ 596
                 ++ VF+   E        NG+  +V ++T       ++ D           ++Q
Sbjct: 522 T-PPALVTDVFALEAEGDVALVPGNGV-VIVAQLTAILPPDTEDPDAAFLRNVLDQSISQ 579

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            + +D+  +    ++ +  +T++ + I 
Sbjct: 580 TLAEDVFTAYATAIQQEAGITINQSTIN 607


>gi|170727449|ref|YP_001761475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
 gi|169812796|gb|ACA87380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
          Length = 619

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 123/637 (19%), Positives = 255/637 (40%), Gaps = 45/637 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  +AK  LV++ + F   G+S  L S S  +   +V  +++  S+   ++
Sbjct: 1   MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEAAAATVNGEEISESALEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A       + + +L+ LV+   LDQ   ++GL     ++  
Sbjct: 60  QSERARLEQQLGEMFEALAADDSYLASVKQSVLERLVAEKLLDQSATELGLRVSDEQIRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +D + + L + G     + D     ++R  +V   VG       
Sbjct: 120 AIMTEPAFQ-TDGKFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVASLVGSEFVLPS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D       + R + Y V++     A A  S+     +++     + +PE   + YI  
Sbjct: 179 EADYLAGIQGQTRDIRYHVIDATPYIAQAVVSDEDARAFYDANLAQFMSPETLSLEYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
           +  +    + ++++E Q  Y++NK++Y  PE R    ++          + +AD  +  L
Sbjct: 239 NAKDMANDVVVTDEEAQTYYDENKQQYLKPEKRLAAHILVNLGDDESAAKAKADAIYAKL 298

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           + G++F +LA+ + +          L  F K  + +    D +FSL+  G+++ V+  SF
Sbjct: 299 QAGEEFAELAKTESEDTFSGEQGGQLDWFEKG-VMEPEFDDVLFSLS-NGEYSAVVKTSF 356

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           GY I  + +++P     F++VK  I  Q++   A +      + L +        D +S 
Sbjct: 357 GYHIIKLLDLQPGAEAPFEDVKAKILAQLKEKHAIDTYFGLQQTLADVSYEVP--DTLSE 414

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
             K + +++       ++           K  +L   F     L       + +     M
Sbjct: 415 AAKELGVEVQTTPVFARNSAPAPF----DKPDVLKAAFSDSVLLDGMNSDVIEVDANHAM 470

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            ++IK    A     ++V + + +  +  +  E    +A +L+  +            + 
Sbjct: 471 VIRIKSHTAAGTVAFDKVKSGIVQRLQQEQANEVAREQAQELMTAFP-----------ST 519

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVF-KVTNS 579
               +T     R + +        I++ F         +V    + +G + +V  KV  +
Sbjct: 520 EVEFVTKTNAGRFEQD---IDGAIINKAFQMAQPADSAVVDTVALASGYAVIVLDKVNAA 576

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           +             L    ++    ++IA LK+   V
Sbjct: 577 QGIDENMLGALKQRLNAQYSEGSYRALIATLKANSEV 613


>gi|183601065|ref|ZP_02962558.1| hypothetical protein PROSTU_04689 [Providencia stuartii ATCC 25827]
 gi|188019406|gb|EDU57446.1| hypothetical protein PROSTU_04689 [Providencia stuartii ATCC 25827]
          Length = 618

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/628 (17%), Positives = 245/628 (39%), Gaps = 24/628 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R  + +   K+ L ++ + F++ G++  +   S S+    V  Q +    F  ++
Sbjct: 1   MMDNLRTKANSPFIKVLLAIIILSFVLTGVAGYMIGGS-SNDAAKVNGQSISREQFQTAF 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE   +   +G   +           L  ++L+NL++   + ++  ++ L A   +V  
Sbjct: 60  SQERQSLQDSLGDKFSEIAGNEESMKFLRNQVLNNLINSTLMAEYANELNLSASDQQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P+F   + KF  D +   LA    +     +     L  + +   F+        
Sbjct: 120 AIFEMPVFQ-TNGKFDGDKYRQILAANNYSADNLAEQVRANLILSQLSDSFIKTDFALPS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +        + R +    L+     A    +   +  ++   +D++ APE  ++SY+  
Sbjct: 179 EVKTYAELVLQEREIRVATLSLADEQAKQTATEDEIKAYYNANQDSFIAPEKVQVSYVEI 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D         ++++E++  YE+N + Y   E +    +   ++KEA+     LK G  F+
Sbjct: 239 DAAALP-PQSVTDEEVKTYYEQNLKNYTQAEQKHYSMIQVASEKEANAIIDELKAGADFV 297

Query: 298 QLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            LA E+    LS  + G                 +L +KG  +  I     +VI  + +I
Sbjct: 298 ALATEKSTDKLSAGNKGIIGWMEEASTPSEIVNANLTEKGQISTPIKSDSNFVIFRLDDI 357

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           KP        VK +I N++   K S++  +  +++ E  A     + ++  E++  + + 
Sbjct: 358 KPESIKPLDSVKDEIKNKLIQDKNSKQFYDLQQKVSE--AATNDNESLASVEEVSGLKVV 415

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
             D+  K+     +       ++   R+  ++     +  V    G     V++ +  P 
Sbjct: 416 ATDWFDKNNPPAALNYPKVINEIFSERLVDQNGSTGINSDVIDVQGDRAFVVRVSQYAPE 475

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           + + LE V + V+   K  K    + ++  +LV    KEGK     G           ++
Sbjct: 476 QTQPLEAVKSQVETLVKRQKANAALKAEVEKLVAAL-KEGK-----GDTANIQFSAPEKV 529

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVGPVQEK--DKF 590
           +R+  +    G        + P +    +    +   + V+ ++     G   +K  ++ 
Sbjct: 530 SRLMPQTPVIGAAM---AMAKPADGKATYTTVRDEKDNLVIIQLDKVIPGKASDKELEQL 586

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
            +    MM   + +++I  L++   + V
Sbjct: 587 TANYRGMMGMAVNEALIQNLRNNAKIEV 614


>gi|149192497|ref|ZP_01870682.1| peptidyl-prolyl cis-trans isomerse D [Vibrio shilonii AK1]
 gi|148833670|gb|EDL50722.1| peptidyl-prolyl cis-trans isomerse D [Vibrio shilonii AK1]
          Length = 432

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 85/429 (19%), Positives = 188/429 (43%), Gaps = 12/429 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E IR+   +   KI L ++ + F+  G+   +    G +T   VG  ++    F  ++
Sbjct: 1   MMERIREGVNSIAVKIILGLIILSFVFAGVGSYIAGGIG-NTAAKVGNVEIGRGEFEQAY 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   ++   + +      K +LD +++   L+Q  E +GL     ++  
Sbjct: 60  QNERNRMQSQLGDYFSTLLGDPSYVASFRKSVLDRMINDVLLEQHAESLGLRISDAQIRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF  D++ + L R G +   + ++  + L R  ++    G       
Sbjct: 120 MILEMPQFQN-DGKFDQDIYQATLRRAGFSADSFAEYLRRDLVRNQLLTALQGSEFTLPS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R +  + L+       A  ++  + +++E+    +  PE  +++YI  
Sbjct: 179 EIELQSKLLTQTRDIKTLTLSLADFSKKAQITDEEIQKYYEENPGQFTRPEQVKVAYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
                + ++++++DE+Q  Y+++ +KY + E R V  ++    ++ +A      L  G  
Sbjct: 239 SAQALKDQVKVTDDEIQKYYDEHLDKYSTSEQREVSHILVQGDDEAKAQAILDELNAGAD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E+ + +       SLG   ++ + D +  ++ F+L   GD T ++   FGY I 
Sbjct: 299 FATLAKEKSEDIGSSEEGGSLGWIERD-VMDPAFEEAAFALKNVGDTTGLVKSDFGYHII 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            +  IK S +    EVK +I  +++   A ++        E       S+D+ ++     
Sbjct: 358 KLDAIKASESKPLAEVKDEIIAELKDQVAVDEFYNLQTTREGCFRYPDSLDDAAKAVNQK 417

Query: 412 SIDLPLVDF 420
            +    +  
Sbjct: 418 VVTTDFISQ 426



 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 93/287 (32%), Gaps = 30/287 (10%)

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319
              ++  P    ++  +    ++      SL    K  Q+ +E+ +   + + G F++  
Sbjct: 170 QGSEFTLPSEIELQSKLLTQTRDIKTLTLSLADFSKKAQITDEEIQKYYEENPGQFTRPE 229

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
              V+  +      K      V              I+  +     +       ++    
Sbjct: 230 QVKVAYIELSAQALKD----QVKVTD--------DEIQKYYDEHLDKYSTSEQREVSHIL 277

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
                +   + + + L  G     +++     S D+   +  G     +     P  E+ 
Sbjct: 278 VQGDDEAKAQAILDELNAGADFATLAKE---KSEDIGSSEEGGSLGWIERDVMDPAFEEA 334

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
            F +    D       +   D  Y  +++     +  + L EV  ++  + K     +E 
Sbjct: 335 AFALKNVGDTTG----LVKSDFGYHIIKLDAIKASESKPLAEVKDEIIAELKDQVAVDEF 390

Query: 500 SSKANQLVLEYSKEG-----KNFRDIGKNLGASLLTTNQINRMDNEN 541
            +      L+ ++EG      +  D  K +   ++TT+ I+++D   
Sbjct: 391 YN------LQTTREGCFRYPDSLDDAAKAVNQKVVTTDFISQVDAPE 431


>gi|209521454|ref|ZP_03270162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
 gi|209498110|gb|EDZ98257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
          Length = 644

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 98/646 (15%), Positives = 231/646 (35%), Gaps = 45/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + LV+L       G+         ++ V SV   K+    + ++ 
Sbjct: 1   MLDFFRTHQRLMMFMLILVIL-PGLGFVGIQGFRGFFDENANVASVNGHKITRVEYDDAM 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L    Q +G   + +   +    + +LD ++    L    + + L A    V   + 
Sbjct: 60  RQQLDRGRQMLGAQFDMKSFDTPERRRMMLDGMIEQRVLADETQRLHLTASDDAVRRTLM 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     D +   LA +G+   +Y +     L+   +          S  
Sbjct: 120 SDPVISSLKNPDGSIDLDRYKQLLAMQGMTPDQYDERVRYNLAMQQLPASIEASAFTSKT 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L         + R V  I  +     A   P++A L  +++ +++++  P    I Y++ 
Sbjct: 180 LAQHLTELAQQQREVQGIAFHPHDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285
                   ++ S+ +L+  Y+ N   + +        ++                + A+E
Sbjct: 240 SPATLSASMQPSDADLKKYYDDNIAHFRTEGEVRASHILIAAPKDASAADKAKAKQTAEE 299

Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339
               +K     F Q+A    ++ G +     LG F +  I    +  D+ F+L KK + +
Sbjct: 300 LLAQVKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAAFAL-KKDEIS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            ++   FG+ I  V+++KP+ T SF EVK  IA +++   A++   +  +     +    
Sbjct: 359 GIVQSDFGFHIIKVTDVKPTVTKSFDEVKDQIAKELKTQLATKAFTDSSEGFTSLVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL--SKDHTV 456
            ++   + + K+      +       +        P   + L  VF  D     +    +
Sbjct: 419 KTLQPAADKFKLQIQTATVTPQPDAKLPPDSPLNNP---KFLAAVFANDSVSAHNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ +  PA     + V   V++     ++ E         + E+ K    
Sbjct: 476 DVGNNTLIAARVTDYKPAAVPAFDAVKDAVRQKVIAEQSNEAAHKDGIAKLAEFEKS--- 532

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                    ++   ++ +    N+ +      +S ++    + +  +   +     Y ++
Sbjct: 533 --------KSTTGLSSPLKVSRNDAQGVPPAALSAIYKVDAQKLPAYVGVDLGDDGYAIY 584

Query: 575 KVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +V         +          + Q+  +   ++ +  L+ + SV 
Sbjct: 585 RVNQIVPPAATDAQHLAAAQQQIAQVDAQSQAEAYLKALRERSSVK 630


>gi|83745917|ref|ZP_00942974.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
 gi|207743054|ref|YP_002259446.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum
           IPO1609]
 gi|83727607|gb|EAP74728.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
 gi|206594451|emb|CAQ61378.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum
           IPO1609]
          Length = 648

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/654 (15%), Positives = 240/654 (36%), Gaps = 44/654 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  + L+++F  F+ +G+      + GS     VG   +  S      
Sbjct: 1   MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDARV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + Q +G   +  +     + + +LD ++    +        L     +V   I 
Sbjct: 60  REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRMMVNEASRTNLSVADTKVRETIE 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + P        D KF  D ++  LA +G+  +++       L    +    V        
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L+D+      + R V  ++L      +     +  +  +++ ++  +  PE  +  Y++F
Sbjct: 180 LVDRLIEARDQQREVQALLLKPADYASKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
              +  K+I ++ ++L+  Y++N  ++ + E R    ++               +K A+E
Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299

Query: 286 AFQSLKK-GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               ++K    F +LA+    + G +     LG  +K          ++F+L + GD + 
Sbjct: 300 VLAEVRKTPGNFAELAKKYSEDPGSAAQGGELGFLAKGATV-PQFESALFALKQPGDISD 358

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FG+ +  +  +K     S + VK ++  ++R   A++K  E        +     
Sbjct: 359 VVQSDFGFHVIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+  ++ + K+       V        G         +++L  +F  D   +  +T  V 
Sbjct: 419 SLKPVADKLKLQVQTADNVTRVPNPALGSSPIN---NDKVLKALFTDDVIKNHRNTQAVQ 475

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           +   + +  ++ E  PA  +KL +V   VK      ++A  ++ KA +  L   K+  + 
Sbjct: 476 VGPTTLVAARVVEHRPASVKKLADVREQVKAKVLAEQSA-ALAKKAGEEKLAALKQSNSA 534

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
              G     S                     ++ +       +      +     Y +++
Sbjct: 535 EGFGAAQMISRQQAQG----------TPPAALAAILRADATKLPATIGVDLGAQGYALYR 584

Query: 576 VTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
           +             +      L Q   +  L++    LK++  V ++  +I   
Sbjct: 585 INKVLPPANVDPARRAADAQQLAQADGQADLNAYYEALKARSKVKINTTVIDAA 638


>gi|257093852|ref|YP_003167493.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046376|gb|ACV35564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 635

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 110/650 (16%), Positives = 266/650 (40%), Gaps = 48/650 (7%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
            + +R   R  V ++FL ++ +PF  WG+   + +    + + SVG  K+    F  +W+
Sbjct: 3   FDAVRNNKR--VVQVFLALITLPFAFWGVDSYVRNSGAGTDLASVGDSKITRPQFDQAWR 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            +   + Q +G     E   +      +L++LV    L        L      +   I +
Sbjct: 61  VQQDRMRQVLGANFRPESMNTPEAKLAVLNSLVDQRLLLIEAAKDRLAVGDDLLREVIGK 120

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P    ++ +FS   + + LA +G+++ ++     + L+   +V         S    D 
Sbjct: 121 IPALQ-ENGQFSLARYRAVLAAQGMSQSQFEAQVRQDLTLQQLVAAIGDTGIASTTTADA 179

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
             R   E R V  +  +            A + ++++   + +   E  +  +++  +  
Sbjct: 180 MLRIQSEERQVAELRFSPDQFLERVQVDPAAVRKFYDDNANRFEIAEQAKAEFVVLSLDG 239

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKK 292
             +K ++S+ E+   YE +K++Y  PE R    ++            + +A+E  + ++K
Sbjct: 240 LLEKAKVSDAEVTGWYESHKDRYQQPEERRASHILILANADVDREKARAKAEEVLKEIQK 299

Query: 293 -GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
              +F +LA+    + G +     LG F +  +   +  D++F  A++ + + ++   FG
Sbjct: 300 SPGRFAELAKQHSQDPGSAEKGGDLGFFGRGMMVK-AFEDTVFK-AQENEVSGLVQSEFG 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406
           Y I  V+ IK     +  +V+ +I  +++   AS +  E  +     +     S+   + 
Sbjct: 358 YHIIKVTGIKVGTQRALVDVRPEIEAELKRQAASRQFAEAAEAFSNLVYEQPDSLQPAAD 417

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPY-----KEQLLFRVFGKDDPLSKDHT--VALP 459
           R K+       +  +G   +   V A+P        ++L  +F +D   ++ +T  V + 
Sbjct: 418 RFKV------TIQQSGWLPRNPPVEALPALGQLNSPKVLAALFSEDSLKNRRNTEAVEIA 471

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
             + +  ++ E  PA  R  + V T+++   KT + A  ++ KA +  L   ++G     
Sbjct: 472 PNTLLAARVIEHRPATVRPFDTVKTEIEASLKTQEAA-ALARKAGEAQLGQLQQG----- 525

Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVT 577
                  +     +++R+++         +  +F   V  +  +      G +YV++K+ 
Sbjct: 526 --AESKVAWGPAREVSRIESRQ--LPAVALKAIFKANVGKLPAYAGAEVGGGNYVLYKIM 581

Query: 578 NSKVGPVQEKDKFISYLTQM---MNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                   +  +  +   +    + ++   + +A L+ +Y + ++ + ++
Sbjct: 582 RVSHPEKVDDKRRAALQREQETILAQEDFAAYLAGLRLRYKIDINKSALE 631


>gi|300703976|ref|YP_003745578.1| peptidyl-prolyl cis-trans isomerase (rotamase d) [Ralstonia
           solanacearum CFBP2957]
 gi|299071639|emb|CBJ42963.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
           solanacearum CFBP2957]
          Length = 649

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/649 (16%), Positives = 235/649 (36%), Gaps = 34/649 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  + L+++F  F+ +G+      + GS     VG   +  S      
Sbjct: 1   MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDAVITTSELDARV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + Q +G   +  +     + + +LD ++    +        L     +V   I 
Sbjct: 60  REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRVMANEASRTNLSIADSKVRETIE 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + P        D KF  D ++  LA +G+  +++       L    +    V        
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARVRSELVLQQIPQSIVASAFVPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L+D+      + R V  ++L      +     +  +  +++ ++  +  PE  +  Y++F
Sbjct: 180 LVDRLIDARDQQREVQALLLKPADYVSKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
              +  K+I ++ ++L+  Y++N  ++ + E R    ++               +K A+E
Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNVARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299

Query: 286 AFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               ++K    F +LA++             LG  +K          ++F+L + GD + 
Sbjct: 300 VLAEVRKAPGNFAELAKKYSGDPGSAAQGGELGFLAKGATV-PQFESALFALKQPGDISD 358

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FG+ I  +  +K     S + VK ++  ++R   A++K  E        +     
Sbjct: 359 VVQSDFGFHIIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+  ++ + K+       V        G         +++L  +F  D   +  +T  V 
Sbjct: 419 SLKPVADKLKLQVQTADNVTRVPNPALGSSPIN---NDKVLKALFTDDVIKNHRNTQAVQ 475

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           +   + +  ++ E  PA  +KL +V   VK      ++A  ++ KA +  L   K+  + 
Sbjct: 476 VGPTTLVAARVVEHRPASVKKLADVREQVKAKVLAEQSA-ALAKKAGEEKLAAVKQSNSA 534

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
              G     S                      +     P  +      +    Y + KV 
Sbjct: 535 EGFGAAQTVSRQQAQG-----TPPAALAAILRADAAKLPATIGVDLGAQGYALYRINKVL 589

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                    +      L Q   +   ++    LK++  V ++  +I   
Sbjct: 590 PPANVDPARRAADAQQLAQADGQADFNAYYEALKARSKVKINTTVIDAA 638


>gi|237748739|ref|ZP_04579219.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes OXCC13]
 gi|229380101|gb|EEO30192.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes OXCC13]
          Length = 647

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 119/646 (18%), Positives = 251/646 (38%), Gaps = 45/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR   R     I LV +   F+  G+        G   V  V  + +    + N+ 
Sbjct: 1   MLEFIRNHKRLTQI-ILLVFIIPSFIFVGVEGFKRFGDG-DAVAKVAGKSITQQEWDNAQ 58

Query: 61  KQELGMISQKI---GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++   + Q+    G   +++   S      +L NL+    L + +    L      V  
Sbjct: 59  REQAERLRQRAAASGQPFDNKWIESSEFKWNVLQNLIVKRVLLETVNKENLSVPEQIVLQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P   G D K     +   LA +G+N   +     + ++   +             
Sbjct: 119 RIREIPGLIGPDGKLDEARYKEALAAQGLNPDMHFAMVRQDMAIQQLAAPIEYSAIEPTA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +  +    + + R V ++  NN    +    ++  L  +++ ++  +  PE+  +  I+ 
Sbjct: 179 VTQRVFNLFEQEREVQHLFFNNAAYRSKVSVTDEELNAFYKAHEAQFTIPEHADVEVIVL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADE 285
           D+    K I+IS+ +LQ+ Y +NK+++  PE R  + ++               +K+A+ 
Sbjct: 239 DMPSVAKNIKISDADLQSYYSQNKDRFSIPEERRAQHILIAVNKNATEAEKSEAKKKAEG 298

Query: 286 AFQSLKKG-KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               LK    +F +LA+    + G + +   LG F++  +      D++F + KKGD + 
Sbjct: 299 ILAELKANPARFAELAKANSQDPGSAQNGGDLGFFTRGKMVKP-FNDAVFGM-KKGDISD 356

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           ++   FGY I  VS+IKP+      +V+  +  ++   +A+ K  E  +     +     
Sbjct: 357 LVQTDFGYHIITVSDIKPAVAKPLAQVRDRVLQELTREQANRKFAEMSETFSNMVYEKPD 416

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+  ++   K+     P  + A       +   +    ++L  +F  D    K +T  + 
Sbjct: 417 SLKPVADALKLTIHSFP--NLARDPAIAAKQNQLLANPKILQAIFTDDVVKGKHNTEAIE 474

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
                 +  +I +  PA     ++V   +  +    K  +   + A +  L   KEG N 
Sbjct: 475 AAPQVLVAARIAKHYPATLTPFDKVKQVITAEVINEKAQKLAKA-AGEAELAKLKEGSNA 533

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
                ++  S       NR +          ++ V    V  +  +   +  G+ YV+++
Sbjct: 534 NGFSSSIMVSRHKIAMANRAE----------LAPVMKADVSKLPAYVGADVPGMGYVIYR 583

Query: 576 VTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +T        +K   +     +  + ++  L++ + YLK +  V +
Sbjct: 584 ITKVVTPSNPDKNLREAMSKQMANVASQQDLNAYLNYLKKEAKVEI 629


>gi|313201268|ref|YP_004039926.1| ppic-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           MP688]
 gi|312440584|gb|ADQ84690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           MP688]
          Length = 632

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 113/647 (17%), Positives = 243/647 (37%), Gaps = 47/647 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S++W+AK+ L  + +PF I G+   L     S ++  V  + +    + NS 
Sbjct: 1   MLEAIRERSKSWLAKLILAAVTIPFAIVGIDTYLRDAGSSVSIAKVDGESISVQEYNNSM 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++    +  +     +        + + ILD L+    L+  +           +   I 
Sbjct: 61  QRLRNQLQAE--GKTDPSVLEQPDVKQSILDRLIINRLLNNAVTKSHFAIGDAALSDHII 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  ++ KFS + +   L    +   ++       L                  +  
Sbjct: 119 TLPEFQ-ENGKFSQETYDRLLTSNRLTPSQFESTMRTDLLVQQAREGLAALAYLPEPISK 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q      + R V    +             A +  +++++KD ++ PE  ++ ++LF  +
Sbjct: 178 QTLATEHQQREVTIAEIKTADFLDQVKVDEAQIKAYYDQHKDKFKVPEQVKLEFVLFSSN 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQ 288
               K+++S++E++  Y++N  K+   E R    ++               +K+A+E   
Sbjct: 238 NLIPKVQVSDEEVKKYYDENAAKFQGNEQRRASHILISFGVSATAEAKQQAKKQAEEVLA 297

Query: 289 SLKKGKK-FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            +++    F  LA++  K          LGSF +  +      D++FS+ K G+ + ++ 
Sbjct: 298 QVRQHPDQFADLAKKYSKDPGSAEKGGDLGSFGRGMMVKP-FEDAVFSM-KPGEISNLVE 355

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402
             FGY I  ++ I    +  F   K  I  ++   KA     E  +     +    TS+ 
Sbjct: 356 SEFGYHIIKLTEIT-GQSQGFDAAKPQIKAELLYQKAIALFAEQAESFNNMVYEQSTSLK 414

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPD 460
            ++    +       +  A       + A     ++L+  VF ++    K +T  V +  
Sbjct: 415 PVADAFGLQVQHTDWISHA-------DGAKYFKSDKLMNMVFAEEVLKDKRNTEAVEVSP 467

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
            + +  ++ +  PA  R  EEV   ++   K  + A+    K    + +  +        
Sbjct: 468 NNLISARVVDYKPAAPRSYEEVKAGIEGVLKAEQAAKLAIKKGEAALADLRQ-------- 519

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTN 578
           GK+     +    I+R + +        ++  F   V  +  +    ++   Y++ KV  
Sbjct: 520 GKSPQLDWIPPVTIDRSNAQG--LTDVAMNNAFKIDVSKLPAYAGVADSNKGYLLIKVNG 577

Query: 579 SKVGPVQE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
               P  E         L   +  + + + +  LK +  +TV+  L+
Sbjct: 578 VNTPPANEDTDKASARELQAALASEYVAAYVKSLKDKSKITVNSRLL 624


>gi|188534628|ref|YP_001908425.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Erwinia
           tasmaniensis Et1/99]
 gi|188029670|emb|CAO97549.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia tasmaniensis Et1/99]
          Length = 622

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 120/639 (18%), Positives = 254/639 (39%), Gaps = 32/639 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++ +R AS     KI L ++ + F++ G+   L   SG      V  Q++  +    ++ 
Sbjct: 1   MDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSG-DYAAKVNGQEISRAQLERAFS 59

Query: 62  QELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            E     Q +G   +   S       + ++ L  L+    L Q+ +DIGL     ++   
Sbjct: 60  SERARQQQMLGEQFSVLASNEGYMQQMRQQTLSQLIDEVLLTQYAKDIGLTIGDDQIKQA 119

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I   P F     +F +  ++S +   G +  +Y +   K L+   ++             
Sbjct: 120 IFTQPAFQTA-GQFDNAKYLSIINNIGFSADQYAEALRKQLTTQQLINAVTKTDFVLGNE 178

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            D       + R V  + ++   + A  D +   ++ ++++++ +  + E  R+SYI  D
Sbjct: 179 ADSLAALVSQQRLVREVTIDVNALAAKQDVTQEEISNYYQQHQSSLMSSEQFRVSYIKMD 238

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                 +  +S  ++Q+ YEK+++ Y  P+      +    + EA     SLKKG  F +
Sbjct: 239 AAAM--EQAVSESDIQSWYEKHQDDYTQPQRNRYSIIQTNTEAEARSVLDSLKKGDDFAK 296

Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+E+        +   +G    +  PD        SL +KG  + VI  S G++IA + 
Sbjct: 297 LAKEKSVDPISARNGGDMGWLEPQTTPD---ELKGASLKEKGQLSGVITSSPGFIIARLD 353

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
             +P       EV  DIA +++  KA     +  +++ +  A     + ++  E++  + 
Sbjct: 354 ETQPEKVKPLSEVHDDIAAKLKQEKAVAAFYKLQQKVSD--AASNDNESLASAEQVAGVK 411

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESI 472
               D+  +D    ++     ++ +    + G++     +  V   DG   +V +I E  
Sbjct: 412 AVDTDWFDRDNLPADLKFKAVQDAIFNGALLGENGAPGSNSDVISVDGDRAFVLRIHEHK 471

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           P   + L++V   +    K  K  ++  ++A++L+ E  K GK   D  K          
Sbjct: 472 PEAVKPLKDVTAQITATLKQQKALQQAKTQADKLLAEL-KAGKG-DDALKAADLKFAAQQ 529

Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVG--PVQE 586
            + RM  +            FS P+            ++  + V+  +   + G  P  +
Sbjct: 530 TLTRMGQD------ALSQAAFSLPLPSEGKPSYGVSEDDKGNVVLIALDKVQKGEIPEAQ 583

Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           K   +  +TQ   +    ++++ L+ +  +        +
Sbjct: 584 KQSLVQGITQNNAQLAFAAMLSNLRKEAKIKYGAAAQAQ 622


>gi|307729660|ref|YP_003906884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
 gi|307584195|gb|ADN57593.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
          Length = 646

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 101/645 (15%), Positives = 232/645 (35%), Gaps = 41/645 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + LV +       G+         S+ V SV   K+    + N+ 
Sbjct: 1   MLDFFRNHKRLMMFMLILV-IVPGLGFVGIQGFRGFFDESANVASVNGHKITRVEYDNAM 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L    Q +G   + +   +     ++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQLDRARQMLGAQFDIKAFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     + +   LA +G+   +Y +     ++  ++     G    S  
Sbjct: 120 NDPVISSLKKPDGSIDVERYKQLLAMQGMTPDQYDERVRYSIATQELPASIQGSAFTSKT 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L         + R V  I  + R   A   P++A L  +++ +++++  P    I Y++ 
Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKIQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285
                   ++ S  +L+  Y++N   Y +        ++                ++A+E
Sbjct: 240 SPATLAASVQPSEADLKKYYDENIAHYRTEGQVRASHILIAAPKDASAADKAKAKQKAEE 299

Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339
               +K     F Q+A    ++ G +     LG F +  I    +  D++F+L KK + +
Sbjct: 300 LLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            ++   FGY I   +++KP+ T  F EVK+ IA  ++   AS+   +D +     +    
Sbjct: 359 GIVQTDFGYHIIKATDVKPAVTRPFDEVKEQIARDLKTQLASKAFSDDSEGFTSIVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            S+   + + K+      +       +              +F     +   +    + +
Sbjct: 419 KSLQPAADKYKLQVQTATVTPQPDPKLPPDSPLNNAKFLAAVFANDSVN-ARNNTQAIDV 477

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
              + +  ++ +   A    L+ +   V++     ++ E         + E+ K      
Sbjct: 478 GSNTLIAARVTDYKAAAVPALDAIKDAVREKVIAAQSNEAAHKDGIAKLAEFEKS----- 532

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKV 576
                  A+   ++ +    N+ +      +S ++    + +  +   +     Y +++V
Sbjct: 533 ------KATTGFSSPLKVSRNDAQGVPAAALSAIYKADAQKLPAYVGVDLGDAGYAIYRV 586

Query: 577 TNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                G     Q        + Q+ ++    + I  L+++  V +
Sbjct: 587 NAVVAGGPVDPQRLAAAQQQIAQVQSQSETQAYIDALRARSKVKL 631


>gi|218888106|ref|YP_002437427.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218759060|gb|ACL09959.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 630

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 117/645 (18%), Positives = 248/645 (38%), Gaps = 40/645 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE+IR  +++W  KI   ++ + F+ WG+       S S  + +V ++ +    F   +
Sbjct: 1   MLELIRAHAQSWGVKIAFGIIILVFVFWGVGS--MHNSSSGALATVNKKPILIQEFGREY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +  +    + +E  + +GL +++L  +++   L      IGL      +   I 
Sbjct: 59  ERQVETLRSRYPG-ITAEDMKQMGLKRQVLQAMITERLLADEAARIGLSVSPVELRRSIE 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F   D +F  +V+ S L  +  +   + D   + +    +          ++    
Sbjct: 118 SITAFRNGDGRFDAEVYRSVLKGQQTSPGRFEDGIRRDMLLQKLRDRVAAPASVTDEEAR 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E R+++Y++           P++  + + + +  D +R P+   +  +     
Sbjct: 178 ALFDYGRERRTIEYVLFPLEDYVLKVTPTDEQIAERYNENMDAWRNPQRISLDAVTLTPA 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVF------------PNQKEADEAF 287
                +EI    + A Y  N E YF  PE      ++F              + +A++  
Sbjct: 238 SLATSVEIPESAVAAFYADNAETYFVVPERVHARHILFMAQEGASKDEDAAARAKAEDVI 297

Query: 288 QSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
             LKKGK F  LA     ++G       LG F+K  +      ++ F+L K G+ +  + 
Sbjct: 298 AQLKKGKDFASLAAKLSDDKGSGAQGGDLGWFTKGQMV-PPFEEAAFAL-KPGEISAPVR 355

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
            +FG+ +  +   +   T +  EV+ +I  ++   KASE++ E      E    G S+D+
Sbjct: 356 SAFGWHVIKMEAHETQRTRALDEVRGEIRQRLGEEKASERMHEALDTALEMAGAGKSIDD 415

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
           I++  K+      L   A   V      A+  K Q +   F        D  + + +G Y
Sbjct: 416 IAKALKLEHKPTGLFSRADAGV------AVGLKGQSVGTAFSTPAGTVIDTPLEV-EGGY 468

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           M   + ES P     LE+V  +V    + ++ A+     A +   + +        +   
Sbjct: 469 MIAAVLESQPESVTPLEKVKEEVAAQVRRIEGAKLAVKAAQEAGAKLA------DGVPAE 522

Query: 524 LGASLLTTNQINRMDNENKFF-GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
           L A + T     R      F      +   F+      +  P++     V+F+V + +  
Sbjct: 523 LAARVKTAEPFGRNGFIAPFGQSRALVDAAFAAAPGAWQPAPVDTSSGAVLFRVKDVQRP 582

Query: 583 PVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
              E     +   + +     ++L    +  L +   + + +  +
Sbjct: 583 GDAEWSAAAETVRATVLSAKREELFRVFVGELSAAAKIELRNAKL 627


>gi|317485995|ref|ZP_07944850.1| ppic-type ppiase domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922768|gb|EFV43999.1| ppic-type ppiase domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 629

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/646 (16%), Positives = 241/646 (37%), Gaps = 43/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML++IR  +++W  KI   ++ + F+ WG+     +   S+ +++V  + +    F   +
Sbjct: 1   MLDLIRANAQSWGVKIAFGIIILVFVFWGVGG--LTGGPSTVILTVNGEPITIQEFQRKY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q    +  +    +++   +++ L ++++ NL+    + Q  + +G+      +   I 
Sbjct: 59  EQLEQQVRAQYPD-LDAAGLKAMQLKQQLIQNLILENLIMQEAKRVGIVVTPVELRKLIE 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH  + KF  D +V  +  +      +       +    +      G       + 
Sbjct: 118 SFPAFHNAEGKFDPDAYVRVIKAQRNTPGNFEAELRNNMLMNKLRADVTAGAFVPEAEVR 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R+  E R ++Y+        +     +A +  ++E  + ++  P    + Y+L    
Sbjct: 178 DLFRYEGERRILEYVFYPLEDYTSKVTVDDAQIKDYYEANQASFTVPPQADVEYLLIGAE 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288
                  IS+  +   YEKN  ++ +PE+     ++  +  +A            +E  +
Sbjct: 238 ALAAAQNISDAAVSEYYEKNAAQFATPEMVRARHILILSDAKASAEDQAKAKAKIEEIAK 297

Query: 289 SLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            +K G+ F ++A+E     G       LG F+   +       + F+L   G+ +  +  
Sbjct: 298 RIKAGEDFGEVAKEVSEDPGSGPQGGELGWFAHGQMV-PEFDKASFAL-NPGELSEPVKT 355

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +   K +      EVK  I  ++   +AS KV+E  ++++  +  G S+ E 
Sbjct: 356 QFGWHLIQLEEKKAAGQKPLDEVKDQIRTRLAQDEASGKVQEALEQVQLAVIGGKSLKEA 415

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
               K+   +  LV+        +++   P     L        P +   T  +    Y+
Sbjct: 416 GEPLKLAPQETGLVNTTELT---EKMGIKPENLPALLAA----KPGTVLDTPFVTKTGYV 468

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
             ++ ES P   + L+ V  D+K   +  K        AN     ++       D+ K L
Sbjct: 469 IAKVNESKPQTVKPLDAVKDDIKARLQQDKARTLAFEAANAERKTFT------ADLPKEL 522

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSKV 581
              L  T  + R     +      +++              + ++ G   V+ +V     
Sbjct: 523 QGKLKKTEPVGRQGYMGELGMNAELAKAAFAAKVNEWFPVAYTLDGGA--VIARVAEVVT 580

Query: 582 GPVQEKDKFISYLT----QMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
              ++       +T        + +    ++ L+S   + + +  I
Sbjct: 581 PSDEDWKTAAPQITDAVLNAKREQMFRGFLSLLRSNAKIELKNETI 626


>gi|187928946|ref|YP_001899433.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12J]
 gi|187725836|gb|ACD27001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12J]
          Length = 646

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 94/652 (14%), Positives = 242/652 (37%), Gaps = 44/652 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  + L+++F  F+ +G+      +  S     V  + +  +      
Sbjct: 1   MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + Q +G   +  +     + + +LD ++    L   +    L   + ++   I 
Sbjct: 60  REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVLANEVVRANLTISNEKIRDTIL 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + P        D  F  + +V  L+ + +  ++   +    LS+  +    V        
Sbjct: 120 QIPAVAALRKPDGSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L+++  +   + R V  ++       A  +  +  +  +++ ++  +  PE  +  Y++F
Sbjct: 180 LVERLIQVRDQQREVQTLLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVF 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADE 285
              E  K+I ++ ++++  Y++N  ++ + E R    ++                 +A+E
Sbjct: 240 SGEEMMKQIPVTPEQIKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEE 299

Query: 286 AFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               ++K    F +LA++             LG   K         +++F+L + GD + 
Sbjct: 300 VLAEVRKNPASFAELAKKYSGDPGSAAQGGELGFLGKGATV-PPFENALFALKQPGDISD 358

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FG+ I  +  +K       + VK ++  ++R   A++K  E        +     
Sbjct: 359 VVQSDFGFHIIKLEEVKGGGVQPLEAVKPELERELRTQLANKKYSELADAFSNTVEDQSD 418

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           S+  ++ + K+    +   D   +     +  +    +++L  +F  D   +  +T A+ 
Sbjct: 419 SLKPVADKLKL---QIQTTDNVTRTPSPAQSGSPIGNDKVLKALFADDVIKNHRNTAAIQ 475

Query: 460 DG--SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
            G  + +  +  E  PA  +KL +V   VK      + A  ++ KA +  L   K+  + 
Sbjct: 476 VGPTTLVAARAAEYRPATVKKLADVREQVKAKVIAEQAA-ALAKKAGEEKLAAVKQSNSA 534

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
              G            ++R   +        ++ +       +      +     Y +++
Sbjct: 535 DGFGAA--------QTVSRQQAQGT--PPAALTAILRADATKLPTTIGVDLGPQGYALYR 584

Query: 576 VTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +             +      L Q   +   ++    LK++  V ++ + + 
Sbjct: 585 INKVLPPANVDETRRAADAQQLAQAAGQTEFNAYYEALKARSKVKINSSAVD 636


>gi|126461486|ref|YP_001042600.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103150|gb|ABN75828.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 621

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/618 (20%), Positives = 266/618 (43%), Gaps = 31/618 (5%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           V    + ++ V    +G+++      G STV SVG + +   ++  + +QE+  +  +I 
Sbjct: 20  VFWGLVGLMAVGLGGFGVTNF---GGGLSTVGSVGDRDITTGAYARALQQEMRALGAQIN 76

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
             V  E A++ GLD+++   LV+ A L    + IGL     RV  EI  +  FHG   +F
Sbjct: 77  QPVTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQF 136

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
             + +   L +  ++E E+     + ++R+ + G   GG      +++    +  E RS 
Sbjct: 137 DRETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVNTLHAYIAERRSF 196

Query: 193 DYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
             + +   ++    A P++A L  W+E +  ++ APE KRI+Y      +    +     
Sbjct: 197 GLLRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPADEA 256

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
            L+  Y++   ++  PE R VE+LVFP  + A EA + L  G  F  L  E+G  L+DI 
Sbjct: 257 ALRRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADID 316

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           LG  S++ +     AD++F+L + G     +    G  +  V+ +  +    F+EV+ D+
Sbjct: 317 LGDASRDALGGA--ADAVFALTEPG-IAGPVETDLGPALFRVNGVIAAHETPFEEVRDDL 373

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
             + +   A   +    +++++ LA G ++++++    +    +        D     +A
Sbjct: 374 LTEYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMKIATVDYAPGLDSD-----IA 428

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
                     ++   D P     T+ L DG  + +++ E +P + +  EEV  DV +  +
Sbjct: 429 GYEAFRTAADKLQKDDFP----ETILLNDGGLLAMRLDEVVPPKLKPFEEVRDDVAEAAR 484

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
                + ++++A ++  + ++EG +    G      +     + R D   +      +  
Sbjct: 485 KDALTKALAARATEI-AKAAEEGTDLGSFG-----PVEDLGPMTR-DGFVEGVPETLVPA 537

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMMNKDLLDS 605
            F       +     +     V ++   +     +      K    + + Q +++D L  
Sbjct: 538 AFEMQQGAFRAIEGADFAG--VLRLDAVEPAAADDEAAKALKASLSAQIEQALSQDALAL 595

Query: 606 VIAYLKSQYSVTVHDNLI 623
               L  +  +T++D  I
Sbjct: 596 FSNSLMQEAGITLNDAAI 613


>gi|163751873|ref|ZP_02159087.1| peptidyl-prolyl cis-trans isomerase D [Shewanella benthica KT99]
 gi|161328223|gb|EDP99387.1| peptidyl-prolyl cis-trans isomerase D [Shewanella benthica KT99]
          Length = 621

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 121/637 (18%), Positives = 254/637 (39%), Gaps = 43/637 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+AS+  +AK  LV++   F   G+S  L S S  +   +V  +++  S+   ++
Sbjct: 1   MLEKIREASQGVIAKSILVLVIFSFAFSGVSSYLGS-STEAAAATVNGEEISESALEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q++G +  +  A       + + +L+ LV+   LDQ   ++GL     ++  
Sbjct: 60  QSERARLEQQLGEMFQALAADDTYLASVKQSVLERLVAEKLLDQSATELGLRVSDQQIKN 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D +F +D +++ L + G     + +     ++R  +V   VG       
Sbjct: 120 AIMTEPAFQ-TDGQFDNDRYLAILRQLGYQANTFRNMMRTDMTRRQLVASLVGSEFVLPG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +        + R + Y +++     A  + ++     +F+     + +PE   + YI  
Sbjct: 179 EISYLAGIQGQTRDIRYHIVDASPFVADVEVTDEQAQSFFDANLAQFMSPETLSLEYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
           +  +    + +++ E QA Y++NK++Y   E R    ++         ++ +A+  +  L
Sbjct: 239 NATDMANDVTVTDAEAQAYYDENKQQYLKAEKRLAAHILINLGDDESASKAKAEAIYAKL 298

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           + G  F QLA+ + +       G    + ++ + +++  D ++SL+K G ++ V+  SFG
Sbjct: 299 QAGDDFAQLAKTESEDTFSGEQGGQLDWFEQGVMELAFDDVLYSLSK-GSYSTVVKTSFG 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406
           Y I  + +I+P     F +VK  I  Q++   A +      + L +       ++ E + 
Sbjct: 358 YHIIKLLDIQPEVEAPFVDVKDKIIAQLKDKAAVDTYYGLQQTLADVTYEVPDTLSEAAS 417

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYM 464
              +  +  P+              A      +L   F  +          + +     M
Sbjct: 418 ELGVEVMTSPVFTRT-------NAPAPFDNSDVLKAAFSTNVLFDRMNSDVIEIDANHAM 470

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            ++IK    A      +V   + +  K  +  E    KA  L+        +F D     
Sbjct: 471 VIRIKSHTAAGTVDFTKVKAAIVERLKQEQANEVARDKAQTLM-------SSFND--AES 521

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVF-KVTNS 579
               +T   + R +   +       S+ F         +V    + NG + +V  KV  +
Sbjct: 522 STEFVTKTNLGRFE---QGIDAAITSKAFQMAQPADSAVVDTVALANGYAVIVLDKVNAA 578

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           +             L+   ++    ++IA LK++  V
Sbjct: 579 EGIDDNLLSALKQRLSAQYSEGDYRAMIAILKAKADV 615


>gi|299066735|emb|CBJ37929.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
           solanacearum CMR15]
          Length = 637

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/637 (16%), Positives = 229/637 (35%), Gaps = 33/637 (5%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           +  + L+++F  F+ +G+      + GS     VG   +  S      +++   + Q +G
Sbjct: 1   MFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRVREQTERLRQMLG 60

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL---FHGKD 129
              +  +     + + +LD ++    +        L     +V   I + P        D
Sbjct: 61  AQYDPRQFEGPQMRRDVLDGIIQQRVMVNEASRANLSVADSKVRETIEQIPAVTQLRKPD 120

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
            KF  D ++  LA +G+   ++       L    +    V        L+D+      + 
Sbjct: 121 GKFDTDAYIKLLAAQGMTPDQFDARVRSELVLQQIPQSIVSSAFVPKSLVDRLIEARDQQ 180

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           R V  ++       A     +  +  +++ ++  +  PE  +  Y++F   +  K+I ++
Sbjct: 181 REVQALLFKPADYAAEVTADDKAIQAYYDAHQQEFAVPEQVKAEYVVFSGEDMMKQIPVT 240

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQSLKK-GKKF 296
            ++L+  Y++N  ++ + E R    ++               +K A+E    ++K    F
Sbjct: 241 PEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEEVLAEVRKSPGSF 300

Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            +LA++             LG  +K         +++F+L + GD + V+   FG+ I  
Sbjct: 301 AELAKKYSGDPGSAAQGGELGFLAKGATV-PPFENALFALKQPGDISDVVESDFGFHIIK 359

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIV 411
           +  +K     S   VK ++  ++R   A++K  E        +     S+  ++ + K+ 
Sbjct: 360 LEEVKGGGVQSLDAVKPELEREVRTQLANKKYTELADAFSNGVEDQSDSLKPVADKLKLQ 419

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSYMWVQIK 469
                 V        G         E++L  +F  D   +  +T  V +   + +  +  
Sbjct: 420 IQTADPVTRVPNPALGNSPIN---NEKVLKALFVDDVTKNHRNTQAVQVGPTTLVAARAV 476

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           E  PA  +KL +V   VK      ++A  ++ K  +  L   K+  +    G     S  
Sbjct: 477 EYRPATVKKLADVREQVKAKVLAEQSA-ALAKKVGEEKLAALKQSNSAEGFGAAQTLSRQ 535

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
                               +     PV +      +    Y + KV          +  
Sbjct: 536 QAQG-----TPPAALVAILRADAAKLPVTIGVDLGAQGYALYRINKVLPPANVDPSRRAA 590

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
               LTQ+  +   ++    LK++  V ++ +++   
Sbjct: 591 DAQQLTQVAGQADFNAYYEALKTRSKVKINGSVVDAA 627


>gi|85712920|ref|ZP_01043960.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           baltica OS145]
 gi|85693226|gb|EAQ31184.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           baltica OS145]
          Length = 624

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/643 (17%), Positives = 254/643 (39%), Gaps = 43/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+++ AK  LV++ + F + G+   + +   ++TV  V   ++   +   ++
Sbjct: 1   MLERIREGSQSFTAKAVLVLIILTFALAGVGSYV-TGGATTTVAEVNDAEISQQALERAY 59

Query: 61  KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + ++ G +    +S+      +   +L+ L+    L Q+  D G+     RV  
Sbjct: 60  ENERNRLQEQFGDMFEAVSSQPGYMQSVRANVLEQLIQQELLVQYARDHGMRVSAARVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI   P F     +F +D+++  L   G   +++       L R+ +             
Sbjct: 120 EIRDIPAFRSA-GQFDNDIYLMALRNAGYTPEQFATVLRDDLIRSQIAQAIGATEFALPA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                +R   + RS  YI+  N +     + S++ +  ++ + +  ++ PE  +++++  
Sbjct: 179 EALALQRLQKQTRSGAYIIAENANFVDQVELSDSDIENYYNENQQQFQTPEQLKVAFVQL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQSLKK 292
              E    +++S+DE++A Y+ + ++Y + E R V  ++  +     Q++A EA   L  
Sbjct: 239 SKAELYNDVKVSDDEVKAYYQGSIDQYRTDEERRVAHILIESDSDNAQEKAQEALAQLND 298

Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  +A+E             L   +K  + D    ++ F+L   GD + ++  SFGY
Sbjct: 299 GADFAAIAKEYSDDTFSAEQGGDLDWITKGSM-DEDFDNAAFALENVGDVSDIVETSFGY 357

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRR 407
            I  + +++P     F++V  +I  +++  +  +K  E  ++L E       +++  +  
Sbjct: 358 HIIKLLDVRPGEVTPFEDVAGEIRQKLKAQQVDDKYFELQQKLAEVSFEQPDTLEPAADA 417

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465
                  +            +        E  L R+F     D       +   D   + 
Sbjct: 418 -------INSTVRTSDLFTRQNAPTALSDEATLNRIFDPQLIDEKLNSDVIETADDRSLV 470

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V++    P   + L++V   +    +  K       +A     ++ ++G+   D      
Sbjct: 471 VRVLAHEPQAVKPLDDVREQIVSQLRVQKAQALALEQAEAWKKQWREQGEPDADYMT--- 527

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFS-------GPVEMVKCFPIENGLSYVVFKVTN 578
                   ++ +  +N+      +  +FS        P       P  +     + KV  
Sbjct: 528 --------LDAIGMDNQNHPRAVLRALFSEAPSAGDAPALTTIEMPNGDAAVVALTKVNE 579

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
           + +   +   + +  L    ++ +L + I  L  Q S++   +
Sbjct: 580 ADIEGEEANQQVVQQLQNRQSQLMLQAFIETLVEQASISRSQS 622


>gi|91783524|ref|YP_558730.1| putative PpiC-type peptidyl-prolyl cis- trans isomerase
           [Burkholderia xenovorans LB400]
 gi|91687478|gb|ABE30678.1| Putative PpiC-type peptidyl-prolyl cis- trans isomerase
           [Burkholderia xenovorans LB400]
          Length = 645

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/647 (16%), Positives = 236/647 (36%), Gaps = 47/647 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + LV +       G+         S+ V SV   K+  + + ++ 
Sbjct: 1   MLDFFRNHKRLMMFMLILV-IVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDAM 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L    Q +G   + +   +     ++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQLDRARQMLGAQFDMKSFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     D +   LA +G+   +Y +     ++   +     G    S  
Sbjct: 120 NDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKT 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L         + R V  I  + R   A   P++A L  +++ +++++  P    I Y++ 
Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285
                   ++  + +L+  Y+ N   Y          ++                ++A+E
Sbjct: 240 SPATLAASVQPGDADLKKYYDDNIAHYRVEGQVRASHILIAAPKDASAADKAKAKQKAEE 299

Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339
               +K     F Q+A    ++ G +     LG F +  I    +  D++F+L KK + +
Sbjct: 300 LLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            ++   FGY I  V+++KP+ T  F EVK  I+  ++   AS+   +D +     +    
Sbjct: 359 GIVQTDFGYHIVKVTDVKPAVTKPFDEVKDQISKDLKTQLASKAFTDDSEGFTSIVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHTVA 457
            S+   + + K+      +          K     P      L  VF  D   + ++T A
Sbjct: 419 KSLQPAADKYKLQLQTATVTPQ----PDPKLAPDSPLNNAKFLAAVFASDAVTAHNNTQA 474

Query: 458 LPDGS--YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           +  G    +  ++ +   A    L+ V   V++    V++ E         + E+ K   
Sbjct: 475 IDVGGNTLIAARVIDYKAAAVPSLDAVKDAVRQKVIAVQSDEAAHKDGAAKLAEFEKS-- 532

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVV 573
                     ++   ++ +    N+ +      +S ++    + +  +   +     Y +
Sbjct: 533 ---------KSTAGFSSPLKVSRNDAQGVPPAALSAIYKVDAQKLPAYVGVDLGDDGYAI 583

Query: 574 FKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           ++V     G   +  +       + Q+  +   ++ +  L+++  V 
Sbjct: 584 YRVNAVVAGAAVDPQRLAAAQQQIAQVDAQSEAEAYLQALRARSKVK 630


>gi|83593225|ref|YP_426977.1| hypothetical protein Rru_A1890 [Rhodospirillum rubrum ATCC 11170]
 gi|83576139|gb|ABC22690.1| hypothetical protein Rru_A1890 [Rhodospirillum rubrum ATCC 11170]
          Length = 632

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/634 (21%), Positives = 258/634 (40%), Gaps = 20/634 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ S++W+AK  L +L + F +WG++D +    G    ++VG Q        N +
Sbjct: 1   MLDALRRGSKSWLAKSLLGLLVLSFGVWGVADYMVRGGGPKPAITVGGQSFGAGYVRNQF 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            ++LG + ++ G  +++E+A ++GL  + +  +V GA LD+    +GL A    +   I 
Sbjct: 61  SEDLGRLRRQ-GIELDAEQAIAMGLLGQTVQTIVQGAVLDESGRRLGLVASDDALRSAIQ 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             PLF G D +F  D     LA   + E  YID   + + R  +V   V  +     ++D
Sbjct: 120 NDPLFKGADGRFDRDRLSRILAANNLTEAGYIDLRRRDMIREALVEPVVSAVGVPGPIVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                  E R    + +    +PA    P+   L +  ++  D + APEY+    +L   
Sbjct: 180 VLAAHASERRVAQVLTVAKAALPAPTTKPTEEALEKVRQENLDRFTAPEYRTAKALLLTR 239

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                 I ++++ +   YE + +++  P  R V Q +F ++++AD A   ++     +  
Sbjct: 240 DAVAGSITVADEAIAQYYEAHGDEFVQPASRRVTQALFSSREQADSALVLIRSSSASLDE 299

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           A  +      I +G+ +   +P      +  +    G          G+ +  V+   P 
Sbjct: 300 ASRKITGSGAIDMGNVTDSSLPAPL--PATIAAQDVGVVGEPAQSPLGWHLFLVTAATPE 357

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            T    EV   I   +   +A + +     ++E+ LA G  +DE++ +  +  +    VD
Sbjct: 358 TTKPLAEVAPQIRKTLASDQAVDSLYALSTQVEDLLAGGAGIDEVATQVGLPLL-AFSVD 416

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
             G    G     +P     L  +FG      +   +   +G +   +++   P   R L
Sbjct: 417 SQGNSQDGTPAKGLPSDGAFLKTLFGL--GEGEVSPMIDYEGGFFIQRLETITPRAPRPL 474

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS-LLTTNQINRMD 538
           + V  +V   W+  +        A  L L  +K G +F D+     AS L TT  + R  
Sbjct: 475 DAVRAEVVALWQDQEQTATAGRLAEGL-LSRAKAGASFEDLAAAEPASRLSTTPPVTRDG 533

Query: 539 N-----ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDK 589
                 E        +  +F+     V      +G+S  + +V   +    +    E+  
Sbjct: 534 RSDGAAEADPLPGALVQAMFAARQGDVVRADGSDGVS--LLRVLEIRQPSAEIAARERAS 591

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
               L Q  + D+ +   A L     VTV   ++
Sbjct: 592 VEQSLRQAYSADVANGYSAALGDTVGVTVDQGVV 625


>gi|253999166|ref|YP_003051229.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           SIP3-4]
 gi|253985845|gb|ACT50702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           SIP3-4]
          Length = 632

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 113/647 (17%), Positives = 242/647 (37%), Gaps = 47/647 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S++W+AK+ L  + +PF I G+   L     S ++  V  + +    + NS 
Sbjct: 1   MLEAIRERSKSWLAKLILAAVTIPFAIVGIDTYLRDAGSSVSIAKVDGESISVQEYNNSM 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++    +  +     +        + + ILD L+    L+  +           +   I 
Sbjct: 61  QRLRNQLQAE--GKTDPSVLEQPDVKQSILDRLIINRLLNNAVTKSHFAIGDAALSDHII 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  ++ KFS + +   L    +   ++       L                  +  
Sbjct: 119 TLPEFQ-ENGKFSQETYDRLLTSNRLTPSQFESTMRTDLLVQQAREGLAALAYLPEPISK 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q      + R V    +             A +  +++++KD ++ PE  ++ ++LF  +
Sbjct: 178 QTLATEHQQREVTIAEIKTADFLDQVKVDEAQIKAYYDQHKDKFKVPEQVKLEFVLFSSN 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQ 288
               K+++S++E++  Y++N  K+   E R    ++               +K+A+E   
Sbjct: 238 NLIPKVQVSDEEVKKYYDENAAKFQGNEQRRASHILISFGVSATTEAKQQAKKQAEEVLA 297

Query: 289 SLKKGKK-FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            +++    F  LA++  K          LGSF +  +      D++FS+ K G+ + ++ 
Sbjct: 298 QVRQHPDQFADLAKKYSKDPGSAEKGGDLGSFGRGMMVKP-FEDAVFSM-KPGEISNLVE 355

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402
             FGY I  ++ I    +  F   K  I  ++   KA     E  +     +    TS+ 
Sbjct: 356 SEFGYHIIKLTEIT-GQSQGFDAAKPQIKAELLYQKAIALFAEQAESFNNMVYEQSTSLK 414

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPD 460
            ++    +       +  A       + A     ++L+  VF ++    K +T  V +  
Sbjct: 415 PVADAFGLQVQHTDWISHA-------DGAKYFKSDKLMNMVFAEEVLKDKRNTEAVEVSP 467

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
            + +  ++ +  PA  R  EEV   ++   K    A+    K    + +  +        
Sbjct: 468 NNLISARVVDYKPAAPRSYEEVKAGIEGVLKAELAAKLAIKKGEAALADLRQ-------- 519

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTN 578
           GK+     +    I+R + +        ++  F   V  +  +    ++   Y++ KV  
Sbjct: 520 GKSPQLDWIPPVTIDRSNAQG--LTDVAMNNAFKIDVSKLPAYAGVADSNKGYLLIKVNG 577

Query: 579 SKVGPVQE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
               P  E         L   +  + + + +  LK +  +TV+  L+
Sbjct: 578 VNTLPANEDADKASARELQAALASEYVAAYVKSLKDKSKITVNSRLL 624


>gi|94310820|ref|YP_584030.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
           metallidurans CH34]
 gi|93354672|gb|ABF08761.1| Peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans
           CH34]
          Length = 647

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 116/650 (17%), Positives = 236/650 (36%), Gaps = 44/650 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  +  V++F  F+ +G+      +  S     V  + +      N  
Sbjct: 1   MLDFVRNNRRLMLLLLL-VLVFPSFVFFGVESYSRFMDSSHDAAKVDGRAITVQEVDNVV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   + Q +G   +          + +LD L+    + +  +   L     ++   I 
Sbjct: 60  RDQSERMRQMLGNNYDPRMFEGPAARQAVLDQLIQQRVISEATQKKHLTVSDAQIAAAIQ 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D KF    +V  LA +G+  ++        LS   + G           
Sbjct: 120 SIPAIAQLRTADGKFDEKAYVQLLAAQGMTPEQLDARMRFELSTQQLGGAIGTTAFVPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           LLD+      + R V  IV+      A   P  A L  ++E +   Y  PE  ++ Y++ 
Sbjct: 180 LLDRLIAIRDQQRDVQAIVIKPADFTAKVTPDAAALKAYYESHLAAYTMPEQAKVEYLVL 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK--- 294
                     I+ D+L++ Y+ N +++ + E R    ++    K+  EA +   K K   
Sbjct: 240 SGDALAASQTITPDQLKSYYDSNIQRFHTDEQRRASHILIAAPKDGKEADRKAAKEKAEK 299

Query: 295 ----------KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                      F  +A++  +          LG   +  +      D++F+L K G  + 
Sbjct: 300 LLEDLRKHPDTFADVAKKNSQDPGSAEKGGDLGFMGRGALVKP-FEDAMFAL-KDGQISD 357

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   +GY I  ++ IKP+ T   + V+ ++  +++   A++   E        +     
Sbjct: 358 VVETDYGYHIIKLTGIKPAATEPLEAVRPELEIELKKQLAAKAYTEQADAFGNMVYEQSE 417

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           S+   + + K+       V      V GK+       E++L  +F  D   +K +T A+ 
Sbjct: 418 SLKPAADKFKLTIQTADNVTRTPNPVLGKD--NPLNNEKVLKALFSDDAIKNKRNTEAVQ 475

Query: 460 DG--SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
            G  + +  +I +  PA  RK EEV   V++ +   + AE              K+G+  
Sbjct: 476 VGPTTLVSARIVDYRPAAARKFEEVEALVRQAYVAQQAAELAR-----------KDGEAR 524

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
            D  K  G++    + +     +        +  +       +      +     Y +++
Sbjct: 525 LDALKKSGSADGFGSMVTVSRAKADGVSPKAVDSIMRADASKLPSLVGVDLGADGYAIYR 584

Query: 576 VTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
           +      P     +++     L QM  +  L +    LK+   V +    
Sbjct: 585 IAKVGTPPQANANQREADAQQLGQMAGQTELAAFYDVLKAGAKVKILHPA 634


>gi|332701510|ref|ZP_08421598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551659|gb|EGJ48703.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 631

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 121/638 (18%), Positives = 239/638 (37%), Gaps = 34/638 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR+ +R+W  KI   ++ + F+ WG+    F     S V  V    V  + +  + 
Sbjct: 1   MLDPIRQNARSWGVKIVFGIIIIVFVFWGVGS--FRNQNGSVVGYVNDTPVNVTEYRQAL 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++    +  +    +++E  + +GL +++   +V    + Q  +D G+      V   I 
Sbjct: 59  ERATEQLRSRFPD-LDAEMLKQLGLRRQVFSQIVDAELVRQKAKDTGMVVSDEEVREIIR 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P F      F ++++   L   G+ E  Y       L    +  +     + S     
Sbjct: 118 STPAFQSDRGGFDYELYRRLLRANGLTEVSYEAGMRTELLLDKMRQVATLPAKASEQEAR 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               F  +   V Y +       A A PS   +  ++E+ K  +  P   RISY+LF   
Sbjct: 178 DHFAFARDTAVVRYALFPLEDFTAQASPSEEEIAGYYEQNKARFTLPAQARISYLLFSAE 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288
           +  +  ++  +E++  YE + +K+   E      ++    K+A            ++  +
Sbjct: 238 QMARPEQVPAEEVRQYYEAHADKFQRQEEVRASHILVKVAKDAPQEEVDTAKAKIEDIRK 297

Query: 289 SLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            +     F   A++        +   LG F +  +   +   + F+L K G  +  +   
Sbjct: 298 KITGSLSFADAAKKFSEGPSGPAGGDLGWFGRGRMV-PTFEQAAFAL-KPGQVSAPVRTE 355

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           FG+ I  +   +    +   EV+ DI  ++    A+  V +      E  A G S+ EI+
Sbjct: 356 FGWHIIKLEERREPGQIPLAEVESDIRAELARDTAASLVGDALDEATELAAAGQSLAEIA 415

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
           +   +V  D      +G   +    A I   ++    +F   D    D  V+  +G Y+ 
Sbjct: 416 KSLHMVPRD------SGMFSESAGPAGIGLNDEAKRVIFSLADGELTDTPVSSGNG-YIL 468

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
            +   S P   + L+EV   ++   K  K  E   +KA  L  + +      +       
Sbjct: 469 AEKAGSKPESVKPLDEVRVQIETLLKRDKALELSKAKAQALAKQLADPAAREQAAASL-- 526

Query: 526 ASLLTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
             L T+   +R     +     D     F             +   + V K+      P 
Sbjct: 527 PELKTSEPFDRKGTVPDLGANQDLAKDAFVAKSGEWLPGAYSSPKGWYVAKLDALIPAPE 586

Query: 585 QE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
            E    KD +++ LTQ   ++L  + I  L+S+  + +
Sbjct: 587 SEWQSQKDMWVAALTQSREQELYQAFIESLRSEAKIEI 624


>gi|91775766|ref|YP_545522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
           flagellatus KT]
 gi|91709753|gb|ABE49681.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
           flagellatus KT]
          Length = 626

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 115/647 (17%), Positives = 244/647 (37%), Gaps = 46/647 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S+ W+AK+ L  + +PF + G+   L     S  V  V  + +    + N+ 
Sbjct: 1   MLEAIRNRSKGWLAKVILAAITIPFALVGVDSYLRDAGSSVAVAKVDGESITVQEYSNAL 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +     +  +    V+        L + ++D+LV G  L   ++         ++   I 
Sbjct: 61  QNLRNRLQSE--GKVDQAVIDGPELKQAVIDHLVEGRLLANEVKRAKFVVSDEQLSHYIM 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           +   FH +D +FS  ++   LA       ++ +     L                N + +
Sbjct: 119 QEESFH-QDGQFSQALYDQFLAERRRTPSQFENEVRTDLLTMQAREGLSALAFVPNGVAN 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
            A +   ++R V           +    +   +  ++++++D ++ PE  ++ ++L   +
Sbjct: 178 NAIKVAHQSREVSIAEFRTADYLSQVKVTEDEVNAYYKEHQDKFKVPEQVKLEFVLLSAN 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288
                 +++ +E +  Y +N  ++   E R    ++               +++A+E   
Sbjct: 238 ALIPSQQVTEEEAREYYAQNAAQFQGDEQRRASHILIGFGVSPTPETKQKAKEKAEEVLA 297

Query: 289 SLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            +KK  ++F QLA    ++ G       LG F    +      D++FS+ K G  + ++ 
Sbjct: 298 LVKKNPERFEQLAHQYSQDPGSKDKGGDLGLFGPGTMVKP-FEDAVFSM-KPGTISDLVE 355

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402
             FGY I  ++ I  S   SF++V+  I  ++   KA  +  E  +     +     S++
Sbjct: 356 TDFGYHIIKLTEIHGSGQ-SFEDVQGQIRAELMYQKALAQFSEQAENFSNMVYEQADSLE 414

Query: 403 EISRREKIVSIDLPLVDFA--GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
            +++   +       +  A   K  K  ++  + + +++L               V +  
Sbjct: 415 PVAKEFGLQVQTSGWLSRADGAKFFKNDKLMNLVFSDEVLK-------DRRNTEAVEVSP 467

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
            + +  ++ E  PA  R  EEV   ++   K  K A     K    + E  + GK     
Sbjct: 468 NNLISARVVEHKPAAARAFEEVKAGIEDFLKHEKAANLAREKGEAALAEL-RAGKA---- 522

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF-PIENGLSYVVFKVTNS 579
                 SL  T  +              +S  F      +  +  + +   Y++ KV   
Sbjct: 523 -----VSLNWTEPVTVDRYNPNTLTELSVSTAFKADASKLPAYNGVADRNGYLIAKVHAV 577

Query: 580 KVGPVQEKDKF--ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           K     E+D+    + L   +  +   + I  LK +  VT++  L+ 
Sbjct: 578 KFAVESEEDQRAAKAQLQAALAAEYRRAYINSLKQKAKVTINTQLLD 624


>gi|254492046|ref|ZP_05105223.1| PPIC-type PPIASE domain protein [Methylophaga thiooxidans DMS010]
 gi|224462743|gb|EEF79015.1| PPIC-type PPIASE domain protein [Methylophaga thiooxydans DMS010]
          Length = 613

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 108/630 (17%), Positives = 237/630 (37%), Gaps = 37/630 (5%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
            + + ++ +PF +WG++  L   S    V  V  +++  +    S +Q    +   +G  
Sbjct: 1   WLIVGLISIPFALWGVNSYLTGAS-DVVVAEVNGKEITQAELQQSLQQYRDQMRNMMGEQ 59

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
            +        + + +LD L+    L    E +G   +   +   I  +P F   D +F  
Sbjct: 60  FDPAMFEGAMVKRNVLDGLIEQQLLRDANEKLGQRINDAEISQVIRTTPAFQR-DGEFDA 118

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           + +   LAR G +   Y       L    +          +   + Q  R   + R + Y
Sbjct: 119 EYYNMVLARVGYSPASYEAQLRADLMSQQLTQNIETTALATEKDVRQTLRLQEQRREIAY 178

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
            V+  +        ++  + Q ++ ++ NY++PE  +++YI   V      + ++ D+L+
Sbjct: 179 GVVPVQEYVEQVSVTDDEVQQLYDNHQSNYQSPEQLKLNYIELSVATISSTLTVTEDDLK 238

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGKKFIQLAEE----QGK 305
             Y  N+ ++  P+ R    ++        Q   +     L+ G+ F  LAEE     G 
Sbjct: 239 QFYADNQSQFVGPQQRRASHILIEGDDNDAQTTIEAIATRLENGEDFSSLAEELSQDPGS 298

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           +     LG F ++ + D +  ++ F+L   GD +  +   FGY +  +++IK      F 
Sbjct: 299 ASQGGDLGFFERD-VMDPAFEEAAFALETIGDVSEPVKTEFGYHLIKLTDIKQPEGQEFS 357

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKD 424
           +V+ ++    R  +A     +  ++L         ++D  +   ++           G +
Sbjct: 358 QVRDEVEKLYRRQQAESIFYDKAEQLANLSYENPDNLDVAADDLELQIKTTESFTRNGTE 417

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
                 + I  +++++   FG D   +      + L D   + +      P+     + V
Sbjct: 418 ------SGIASEQKVIAAAFGDDVLKNDLNSAVIELADDHLVVIHKNSYTPSTVLPFDSV 471

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
              +++     K +E+      + VL+  K+G    D+       L T  +      E+ 
Sbjct: 472 SPAIEQQLLFEKASEKAREH-GESVLKELKQGNQATDL-------LPTWQEAEFYGRESD 523

Query: 543 FFGYDGISQVFSGPVEMVKCFPI---ENGLSYVVFKVTNSKVG-----PVQEKDKFISYL 594
                 + + F+               N  +Y+V ++T    G       +++      L
Sbjct: 524 NISMQILQRAFAMSKPESGSKFAGFTANNGNYIVIELTAVDEGKPADVEAEDQQALKQQL 583

Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           TQ+     + + I  L+ Q  + + D  +Q
Sbjct: 584 TQVHANAEVQAFITSLREQADIEILDETLQ 613


>gi|292487473|ref|YP_003530345.1| putative protease maturation protein [Erwinia amylovora CFBP1430]
 gi|292898715|ref|YP_003538084.1| peptidyl-prolyl cis-trans isomerase D [Erwinia amylovora ATCC
           49946]
 gi|291198563|emb|CBJ45671.1| peptidyl-prolyl cis-trans isomerase D [Erwinia amylovora ATCC
           49946]
 gi|291552892|emb|CBA19937.1| putative protease maturation protein [Erwinia amylovora CFBP1430]
          Length = 623

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 122/640 (19%), Positives = 251/640 (39%), Gaps = 32/640 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R AS     KI L ++ + F++ G+   L   SG      V  Q++  + F  ++
Sbjct: 1   MMDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSG-DYAAKVNGQEISRAQFERAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E     Q +G   +           + ++ L  L+    L Q+ +DIGL     ++  
Sbjct: 60  SSERARQQQMLGEQFSVLAGNDGYMQQMRQQALSQLIDEMLLTQYAKDIGLTISDDQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F     KF +  ++S +   G    +Y +   K L+   ++    G       
Sbjct: 120 AIFTQPAFQTA-GKFDNAKYISIINNMGFTADQYAEALRKQLTTQQLIESVTGTDFVLGN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D       + R V  + +N   + A  + +   +  ++++++ +  + E  R+SYI  
Sbjct: 179 EADSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSSEQFRVSYIKM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S  ++Q+ YEK++  Y  P+      +    + EA      LKKG  F 
Sbjct: 239 DAATM--QQPVSESDIQSWYEKHQGDYTQPQRNRYSIIQTKTEAEARSVLDVLKKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +LA+E+        +   +G    E  PD        +L +KG  + VI  S G+++A +
Sbjct: 297 RLAKEKSADPISARNGGDMGWLEPETTPD---ELKRAALKEKGQLSGVITSSVGFIVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            + +P    +  EV  DIAN+++  KA     +  +++ +  A     + ++  E+   +
Sbjct: 354 DDTQPEKVKALSEVHDDIANKLKQEKAVVAFYKLQQKVSD--AASNDNESLASAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 + G D    E+     ++ +    + G++     +  V   DG   +V +I E 
Sbjct: 412 KAVETGWFGHDNIPAELKFKAVQDAIFNGALLGENAAPGSNSDVITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L++V   +    K  K  ++  ++A++L+ E  K GK   D  K         
Sbjct: 472 KPEAVKALQDVTAQITDTLKQQKGLQQAKAQADKLLAEL-KAGKG-DDALKAANLRFAAQ 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVG--PVQ 585
             + R   +            FS P+            +   + V+  +   + G  P  
Sbjct: 530 QTLTRTGQD------ALSQAAFSLPLPSQGKSSYGISEDAQGNVVLIALDKVQKGEMPQA 583

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +K   +  +TQ   +    ++++ L+ +  +        +
Sbjct: 584 QKQALVQGITQNNAQLAFAAMLSNLRKEAKIKYGAAAQAQ 623


>gi|241663130|ref|YP_002981490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12D]
 gi|240865157|gb|ACS62818.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12D]
          Length = 646

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 95/652 (14%), Positives = 238/652 (36%), Gaps = 44/652 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  + L+++F  F+ +G+      +  S     V  + +  +      
Sbjct: 1   MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + Q +G   +  +     + + +LD ++    L   +    L   + ++   I 
Sbjct: 60  REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVLANEVTRANLTISNEKIRDTIL 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + P        D  F  + +V  L+ + +  ++   +    LS+  +    V        
Sbjct: 120 QIPAVAALRKPDGSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L+D+  +   + R V  ++       A  +  +  +  +++ ++  +  PE  +  Y++F
Sbjct: 180 LVDRLIQVRDQQREVQALLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVF 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADE 285
              E  K+I ++ ++++  Y++N  ++ + E R    ++                 +A+E
Sbjct: 240 SGEEMMKQIPVTPEQIKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEE 299

Query: 286 AFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               ++K    F  LA++             LG   K         +++F+L + GD + 
Sbjct: 300 VLAEVRKNPASFADLAKKYSGDPGSAAQGGELGFLGKGATV-PPFENALFALKQPGDISD 358

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FG+ I  +  +K       + VK ++  ++R   A++K  E        +     
Sbjct: 359 VVQSDFGFHIIKLEEVKGGGVQPLEAVKPELERELRTQLANKKYSELADAFSNTVEDQSD 418

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           S+  ++ + K+       V       +          +++L  +F  D   +  +T A+ 
Sbjct: 419 SLKPVADKLKLQIQTADNVTRTPSPAQSGSPIG---NDKVLKALFADDVIKNHRNTAAIQ 475

Query: 460 DG--SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
            G  + +  +  E  PA  +KL +V   VK      + A  ++ KA +  L   K+  + 
Sbjct: 476 VGPTTLVAARAAEYRPATVKKLADVREQVKAKVIAEQAA-ALAKKAGEEKLAAVKQSNSA 534

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
              G            ++R   +        ++ +       +      +     Y +++
Sbjct: 535 DGFGA--------VQTVSRQQAQGT--PPAALTAILRADATKLPTTIGVDLGAQGYALYR 584

Query: 576 VTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +             +      L Q   +   ++    LK++  V ++ + + 
Sbjct: 585 INKVLPPANVDETRRAADAQQLAQAAGQTEFNAYYEALKARSKVKINSSAVD 636


>gi|88810611|ref|ZP_01125868.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
           Nb-231]
 gi|88792241|gb|EAR23351.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
           Nb-231]
          Length = 645

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 110/650 (16%), Positives = 252/650 (38%), Gaps = 38/650 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++  VA I + +L +PF  +G+ +  F+   + TV +V    +  +    + 
Sbjct: 1   MLQTIRDRAQGIVAYIIVGLLIIPFAFFGVYNY-FTGDSNPTVATVNGIDITRAELDAAV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + + +G   N        L  ++LD LV  A L  FI   G       +   I 
Sbjct: 60  QRQQSQLRELLGDQYNPALFDESHLRPQVLDRLVDQAVLLYFIRSQGFRVTDESLRSFIR 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   D +FS + + + L + G +  +Y     +      +    VG    +   + 
Sbjct: 120 SQPYF-LADGQFSKERYRAVLRQSGYSTDQYEAQLRQQQLLRQLELGIVGTAVATKHEMA 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      ++R + ++ +++ +           + Q++  +K  +  P   ++SYI    +
Sbjct: 179 RFVALERQSRDLAWLKIDSANFRDQTQVDAKAIQQYYATHKQAFEQPAQVKVSYIELSEN 238

Query: 241 EKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQKEA------------DEAF 287
               ++E+ +  +Q  YE+ K+ ++  P+ R V  ++    K+A            +   
Sbjct: 239 ALADQLELDDKAVQRFYEEFKDSRFTVPDARRVRHILIKLPKDASQHQIEVARGQIEALR 298

Query: 288 QSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           + + +G  F +LA+ Q + +        LG   +  +   ++ ++ F L   G+ +  I 
Sbjct: 299 ERIVQGASFAELAQRQSQDVGSARQSGDLGFVRQGEMAK-AIDEAAFKLP-IGETSEPIR 356

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMD 402
             FG+ +  V+  +      F EV+  I  ++   ++ ++  +   +          S++
Sbjct: 357 SRFGWHLIEVTASRAGGVKPFSEVESQIRQELLKQQSGKRFYKLSNQAANYAYEHPDSLE 416

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
            ++ +     + +   ++  +    + +A+ P   +  F        L+    + L D  
Sbjct: 417 PLAAKF---GLKIRQSNWFSQAGAKEGIASHPKVVKAAFSDEVLKQGLNSQS-IDLGDEH 472

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + +++ +  PA  R L EV   V++   TV  +E+      QL LE +K G++   + +
Sbjct: 473 QVILRVDQHKPAAVRPLAEVRDRVREHLVTVGASEQAQKLGAQL-LEKAKSGQSLEALAE 531

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTN 578
               +  +     R  +         + + F  P        +         Y V +V  
Sbjct: 532 ANQHARYSAVGWVRRGSNK--VPAAIVERGFRLPHPSSDALALAGIELSDGGYGVVEVRG 589

Query: 579 SKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
            + G        E+ +    L ++  +  L ++I  L+ Q  V      +
Sbjct: 590 VRDGALDKLDAAERTQVRQGLQRLNAESTLQAMIHVLRQQADVEFDRGQV 639


>gi|312171578|emb|CBX79836.1| putative protease maturation protein [Erwinia amylovora ATCC
           BAA-2158]
          Length = 623

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 121/640 (18%), Positives = 250/640 (39%), Gaps = 32/640 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R AS     KI L ++ + F++ G+   L   SG      V  Q++  + F  ++
Sbjct: 1   MMDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSG-DYAAKVNGQEISRAQFERAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E     Q +G   +           + ++ L  L+    L Q+ +DIGL     ++  
Sbjct: 60  SSERARQQQMLGEQFSVLAGNDGYMQQMRQQALSQLIDEMLLTQYAKDIGLTISDDQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F     KF +  ++  +   G    +Y +   K L+   ++    G       
Sbjct: 120 AIFTQPAFQTA-GKFDNAKYIIIINNMGFTADQYAEALRKQLTTQQLIESVTGTDFVLGN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D       + R V  + +N   + A  + +   +  ++++++ +  + E  R+SYI  
Sbjct: 179 EADSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSSEQFRVSYIKM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S  ++Q+ YEK++  Y  P+      +    + EA      LKKG  F 
Sbjct: 239 DAATM--QQPVSESDIQSWYEKHQGDYTQPQRNRYSIIQTKTEAEARSVLDVLKKGGDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +LA+E+        +   +G    E  PD        +L +KG  + VI  S G+++A +
Sbjct: 297 RLAKEKSADPISARNGGDMGWLEPETTPD---ELKRAALKEKGQLSGVITSSVGFIVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            + +P    +  EV  DIAN+++  KA     +  +++ +  A     + ++  E+   +
Sbjct: 354 DDTQPEKVKALSEVHDDIANKLKQEKAVVAFYKLQQKVSD--AASNDNESLASAEQAAGV 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                 + G D    E+     ++ +    + G++     +  V   DG   +V +I E 
Sbjct: 412 KAVETGWFGHDNIPAELKFKAVQDAIFNGALLGENAAPGSNSDVITVDGDRAFVLRISEH 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
            P   + L++V   +    K  K  ++  ++A++L+ E  K GK   D  K         
Sbjct: 472 KPEAVKALQDVTAQITDTLKQQKGLQQAKAQADKLLAEL-KAGKG-DDALKAANLRFAAQ 529

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVG--PVQ 585
             + R   +            FS P+            +   + V+  +   + G  P  
Sbjct: 530 QTLTRTGQD------ALSQAAFSLPLPSQGKSSYGISEDAQGNVVLIALDKVQKGEMPQA 583

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +K   +  +TQ   +    ++++ L+ +  +        +
Sbjct: 584 QKQALVQGITQNNAQLAFAAMLSNLRKEAKIKYGAAAQAQ 623


>gi|253996686|ref|YP_003048750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera
           mobilis JLW8]
 gi|253983365|gb|ACT48223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera
           mobilis JLW8]
          Length = 632

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/647 (17%), Positives = 249/647 (38%), Gaps = 45/647 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++ WV K  L  + VPF ++G+   L     ++ +  V   ++   ++ N+ 
Sbjct: 1   MLDGIRSVAKGWVGKAILAFITVPFALFGIDSYLSQAGNNAAIAKVDGSEISVQAYANAM 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +     +  +     +  +  +  +   +LD L++   L++ I+    +    ++   I 
Sbjct: 61  QNLRSRMQAE--GKADQAQLDNPEVKAMVLDQLINEQLLEKEIQRANYKISDAQLATYIT 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  KD KFS +++   L +     K++       L               S    D
Sbjct: 119 AMPSFQ-KDGKFSQELYDELLQQNRYTPKKFEAEIRATLLAQQAQDGIAKLGFISTARAD 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  +   + R V    L  +        S   +  +++K+KD  R PE  +I ++L    
Sbjct: 178 KTLKLLNQKRVVTVSELKTKDYLDQVKVSPEEVKAYYDKHKDKLRDPEQVKIEFLLLSAS 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288
                I++ + E++  Y++N  K+   E R    ++               + +A     
Sbjct: 238 SLVPGIKVDDAEVKRYYDENSAKFKGNEQRRASHILIGFGVNATPEQKQEAKNKAQALLD 297

Query: 289 SLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           ++KK  K F +LA    ++ G +     LGSF +  +      ++ F + K  + + ++ 
Sbjct: 298 TIKKNPKSFEELAIKNSQDPGSATKGGDLGSFGRGAMVKP-FEEAAFKM-KVNEVSDLVE 355

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             FGY I  V+ I       F+ +K  I   +   KA  +  E  +     +   +  D 
Sbjct: 356 SEFGYHIIKVTEIT-GQGSDFESLKAQIKGDLIFQKAQAEFVEKAESFSNAVYEQS--DS 412

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDG 461
           ++   K+    L L  +  +    +E A     ++++  +F  +          V +   
Sbjct: 413 LAPVAKMFGGQLQLSGWTSR----EEAAKFFKNDKIVSLIFSPESIKEHRNTEAVEISPN 468

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
           + +  ++ E  PA  +  + V   ++   K    ++   +K  + +       K  R  G
Sbjct: 469 NLVSARVLEYKPAATKTFDAVKAGIEDLLKLEAASKLAIAKGEEAL-------KTLRAGG 521

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNS 579
                  +   +++R + +        ++QVF   V  +  +    ++ L Y++ K+   
Sbjct: 522 SVANLDWIPEVKVDRKNAQG--LTQLAMTQVFKTDVSKLPAYSGLADSKLGYLIVKIIAV 579

Query: 580 KVGPVQEKDKFISY---LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
               + + +   +    L+Q++  + L +    L+ +  VTV+  L+
Sbjct: 580 DTESIADAESVKTAKGELSQVLVDEYLSAYKQSLREKAKVTVNQRLL 626


>gi|237746606|ref|ZP_04577086.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS]
 gi|229377957|gb|EEO28048.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS]
          Length = 647

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 119/646 (18%), Positives = 245/646 (37%), Gaps = 45/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR   R     I LV +   F+  G+        G   V  V  + +    + N+ 
Sbjct: 1   MLDFIRSHKRLTQI-ILLVFIIPSFIFVGVEGYKRFGDG-DAVAKVNGKAITQQEWDNAQ 58

Query: 61  KQELGMISQKI---GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++     Q+    G   +S+   S      +L NL++   L   +    L      V  
Sbjct: 59  REQAERFRQRAAVQGQPFDSKWIESSQFKWAVLQNLINRRVLLATLNKEHLTVPEQVVLQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           +I   P   G D K +   +   LA +G+N   +    T+ ++   +             
Sbjct: 119 KIREIPGLIGPDGKLNEARYKEVLAAQGLNPDMHFALMTQDMAMQQIAAPIEFSAFEPKA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           ++ +    + + R V  +V +          +   LT ++  ++  +  PE+  +  ++ 
Sbjct: 179 VVTRVWNLFEQERDVQRLVFDAGAYRNKVSVTEDDLTAFYRAHEAQFTIPEHADVEVVVL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------ 285
           D+   EK ++IS+ +LQ+ YE+N++++  PE R  + ++    K A +            
Sbjct: 239 DMPTVEKNVKISDADLQSYYEQNRDRFSIPEERRAQHILIAVAKNASDSEKAEAKKKAEE 298

Query: 286 AFQSLKKGKK-FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               LK     F +LA+    + G + +   LG F++  +      D++F + KKG+ + 
Sbjct: 299 LLAQLKADPSRFAELAKAHSQDPGSARNGGDLGFFTRGKMVKP-FNDAVFGM-KKGEISD 356

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
            +   FGY +  V++IKP+      +VK  +  +++  + S+K  E  +     +     
Sbjct: 357 PVQTDFGYHLIAVTDIKPAVAKPLSQVKDSVLQELKRQETSKKFAEMSETFSNMVYEKPD 416

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+  ++   K+     P +         +    +    ++L  +F  D    K +T  V 
Sbjct: 417 SLKPVADALKLTVHTFPNLARDPAVAARQ--NPLLADPKILQAIFSDDAVKGKHNTEAVE 474

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           +     +  +I +  PA     E+V + VK      K    ++  A +  L   KEG   
Sbjct: 475 VSPQVLVAARIAKHYPAELTPFEKVKSVVKAQVTNEKAM-ALAKAAGEAELARLKEGGAP 533

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
                 L  S        R D          ++ V    V  +  +         Y++++
Sbjct: 534 SGFSPGLLVSRQKITMAGRSD----------LAPVMKADVSKLPAYVGVEMAPNGYIIYR 583

Query: 576 VTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +T        +   ++     +T +M +  L + + YLK +  V +
Sbjct: 584 ITRVVTPEKTDGKLREAMSRQMTNVMAQQDLAAYMNYLKQEAKVEI 629


>gi|94987556|ref|YP_595489.1| parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731805|emb|CAJ55168.1| Parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 629

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 123/643 (19%), Positives = 237/643 (36%), Gaps = 36/643 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  +++W  KI   ++ + F+ WG+     S      VVSV  Q +         
Sbjct: 1   MLDFIRSNAQSWGVKIAFGLIIIVFIFWGIG--TLSGGPEVEVVSVNGQSITIQELQKRC 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++    I Q     +++    +  + +     L+    + Q    IGL      +   I 
Sbjct: 59  EEIEQNIRQNFP-TISAAEINTFRIKQLATQQLILETLVLQEANRIGLIITPIELRKTIE 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH  + KF   +++  L         +       L    +      G   S     
Sbjct: 118 SFPAFHNTEGKFDPAIYLQFLKERNDTPGHFESQIRTNLLINKIQQEITAGAYISPTEAY 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +    R++ Y++          + S   + +++ +  + ++ P    + Y+L    
Sbjct: 178 DVYMYESATRTIQYLLFPTEDYLNKVNISADEVAKFYNESSEQFKTPTELNLEYLLITPR 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288
                  I +  +   Y+K+KE + SPE    + +V               Q++ ++A  
Sbjct: 238 SLANNQTIDDTTVSEYYQKHKEDFKSPEQIHAQHIVVFAPENSEPEVLKKAQEKINQAAN 297

Query: 289 SLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           ++KKG+ F  +A++  +     +   LG F+ E     + AD  FSL   G+ +  I   
Sbjct: 298 AIKKGEDFSSVAKKFSQDNVAQNGGDLGWFTYEQAV-PAFADVAFSLT-PGEISQPIQTP 355

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
            GY I  + + KP    SF EV K I  ++   KAS ++++  + ++  L    S+ E  
Sbjct: 356 VGYHIIKLIDKKPEEIKSFDEVSKTIQQRLAEDKASIELQDVLENVQLALIENKSLTEAG 415

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
           +   +  I   L     KD+  +   A P +   L  V     P +      +    Y+ 
Sbjct: 416 KPYNLSPISTGLFPI--KDIASQLELAKPDELSKLTHV----SPGTILENPLITKTGYVI 469

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           +++K+  P   + +E V   +    K  K  E ++ KA +  L   K       + KN  
Sbjct: 470 IKVKDIKPESIKSIEVVENQISSLLKKQKANE-LAMKAAEEQLTILKNSSIPPAVAKN-- 526

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
             L T+  I R            +   F          P       ++  V+   V P +
Sbjct: 527 --LKTSPAIIRSATIENLKNPQLVPDTFKATPGSWLTTPYTVEQGVLIAYVSKEVVYPSK 584

Query: 586 E-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           E     K+ F+S + +   + +    +  L+ Q  +T+ +  I
Sbjct: 585 EQWDNIKEAFMSAIVKSKREQMFKGFLTMLEKQAKITIKEEKI 627


>gi|221638406|ref|YP_002524668.1| YbaU [Rhodobacter sphaeroides KD131]
 gi|221159187|gb|ACM00167.1| YbaU [Rhodobacter sphaeroides KD131]
          Length = 621

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/618 (21%), Positives = 266/618 (43%), Gaps = 31/618 (5%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           V    + ++ V    +G+++      G STV SVG + +   ++  + +QE+  +  +I 
Sbjct: 20  VFWGLVGLMAVGLGGFGVTNF---GGGLSTVGSVGDRDITTGAYARALQQEMRALGAQIN 76

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
             V  E A++ GLD+++   LV+ A L    + IGL     RV  EI  +  FHG   +F
Sbjct: 77  QPVTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQF 136

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
             + +   L +  ++E E+     + ++R+ + G   GG      ++D    +  E RS 
Sbjct: 137 DRETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVDALHAYIAERRSF 196

Query: 193 DYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
             + +   ++    A P++A L  W+E +  ++ APE KRI+Y      +    +     
Sbjct: 197 GLLRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPTDEA 256

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
            L+  Y++   ++  PE R VE+LVFP  + A EA + L  G  F  L  E+G  L+DI 
Sbjct: 257 ALRRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADID 316

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           LG  S++ +     AD++F+L + G     +    G  +  V+ +  +   SF+EV+ D+
Sbjct: 317 LGDASRDALGGA--ADAVFALTEPG-IAGPVETDLGPALFRVNGVIAAHETSFEEVRDDL 373

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
             + +   A   +    +++++ LA G ++++++    +    +        D+ G    
Sbjct: 374 LTEYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMKIATVDYAPGLDSDISG---- 429

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
                     ++   D P     T+ L DG  + +++ E +  + +  EEV  DV +   
Sbjct: 430 -YEAFRTAADKLQKDDFP----ETILLNDGGLLAMRLDEVVAPKLKPFEEVRDDVAEAAH 484

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
                + ++++A ++  + ++EG +    G      +     + R D   +      +  
Sbjct: 485 KDALTKALAARATEI-AKAAEEGTDLGSFG-----PVEDLGPMTR-DGFVEGVPETLVPA 537

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMMNKDLLDS 605
            F       +     +     V ++   +     +      K    + + Q +++D L  
Sbjct: 538 AFEMQQGAFRAIEGADFAG--VLRLDAVEPAAADDEAAKALKASLSAQIEQALSQDALAL 595

Query: 606 VIAYLKSQYSVTVHDNLI 623
             + L  +  +T++D  I
Sbjct: 596 FSSSLMQEAGITLNDAAI 613


>gi|332557437|ref|ZP_08411759.1| putative peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides WS8N]
 gi|332275149|gb|EGJ20464.1| putative peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides WS8N]
          Length = 621

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/618 (20%), Positives = 265/618 (42%), Gaps = 31/618 (5%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           V    + ++ V    +G+++      G STV SVG + +   ++  + +QE+  +  +I 
Sbjct: 20  VFWGLVGLMAVGLGGFGVTNF---GGGLSTVGSVGDRDITTGAYARALQQEMRALGAQIN 76

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
             V  E A++ GLD+++   LV+ A L    + IGL     RV  EI  +  FHG   +F
Sbjct: 77  QPVTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQF 136

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
             + +   L +  ++E E+     + ++R+ + G   GG      +++    +  E RS 
Sbjct: 137 DRETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVNTLHAYIAERRSF 196

Query: 193 DYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
             + +   ++    A P++A L  W+E +  ++ APE KRI+Y      +    +     
Sbjct: 197 GLLRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPADEA 256

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
            L+  Y++   ++  PE R VE+LVFP  + A EA + L  G  F  L  E+G  L+DI 
Sbjct: 257 ALRRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADID 316

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           LG  S++ +     AD++F+L + G     +    G  +  V+ +  +    F+EV+ D+
Sbjct: 317 LGDASRDALGGA--ADAVFALTEPG-IAGPVETDLGPALFRVNGVIAAHETPFEEVRDDL 373

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
             + +   A   +    +++++ LA G ++++++    +    +        D     +A
Sbjct: 374 LTEYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMKIATVDYAPGLDSD-----IA 428

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
                     ++   D P     T+ L DG  + +++ E +  + +  +EV  DV +  +
Sbjct: 429 GYEAFRTAADKLQKDDFP----ETILLNDGGLLAMRLDEVVAPQLKPFDEVRDDVAEAAR 484

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
                + ++++A ++  + ++EG +    G      +     + R D   +      +  
Sbjct: 485 KDALTKALAARATEI-AKAAEEGTDLGSFG-----PVEDLGPMTR-DGFVEGVPETLVPA 537

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMMNKDLLDS 605
            F       +     +     V ++   +     +      K    + + Q +++D L  
Sbjct: 538 AFEMQQGAFRAIEGADFAG--VLRLDAVEPAAADDEAAKALKASLSAQIEQALSQDALAL 595

Query: 606 VIAYLKSQYSVTVHDNLI 623
               L  +  +T++D  I
Sbjct: 596 FSNSLMQEAGITLNDAAI 613


>gi|77462552|ref|YP_352056.1| peptidyl-prolyl cis-trans isomerse [Rhodobacter sphaeroides 2.4.1]
 gi|4185543|gb|AAD09115.1| YbaU [Rhodobacter sphaeroides]
 gi|77386970|gb|ABA78155.1| possible peptidyl-prolyl cis-trans isomerse [Rhodobacter
           sphaeroides 2.4.1]
          Length = 621

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/618 (20%), Positives = 265/618 (42%), Gaps = 31/618 (5%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           V    + ++ V    +G+++      G STV SVG + +   ++  + +QE+  +  +I 
Sbjct: 20  VFWGLVGLMAVGLGGFGVTNF---GGGLSTVGSVGDRDITTGAYARALQQEMRALGAQIN 76

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
             V  E A++ GLD+++   LV+ A L    + IGL     RV  EI  +  FHG   +F
Sbjct: 77  QPVTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQF 136

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
             + +   L +  ++E E+     + ++R+ + G   GG      +++    +  E RS 
Sbjct: 137 DRETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVNTLHAYIAERRSF 196

Query: 193 DYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
             + +   ++    A P++A L  W+E +  ++ APE KRI+Y      +    +     
Sbjct: 197 GLLRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPADEA 256

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
            L+  Y++   ++  PE R VE+LVFP  + A EA + L  G  F  L  E+G  L+DI 
Sbjct: 257 ALRRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADID 316

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           LG  S++ +     AD++F+L + G     +    G  +  V+ +  +    F+EV+ D+
Sbjct: 317 LGDASRDALGGA--ADAVFALTEPG-IAGPVETDLGPALFRVNGVIAAHETPFEEVRDDL 373

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
             + +   A   +    +++++ LA G ++++++    +    +        D     +A
Sbjct: 374 LTEYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMEIATVDYAPGLDSD-----IA 428

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
                     ++   D P     T+ L DG  + +++ E +  + +  EEV  DV +  +
Sbjct: 429 GYEAFRTAADKLQKDDFP----ETILLNDGGLLAMRLDEVVAPKLKPFEEVRDDVAEAAR 484

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
                + ++++A ++  + ++EG +    G      +     + R D   +      +  
Sbjct: 485 KDALTKALAARATEI-AKAAEEGTDLGSFG-----PVEDLGPMTR-DGFVEGVPETLVPA 537

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMMNKDLLDS 605
            F       +     +     V ++   +     +      K    + + Q +++D L  
Sbjct: 538 AFEMQQGAFRAIEGADFAG--VLRLDAVEPAAADDEAARALKASLSAQIEQALSQDALAL 595

Query: 606 VIAYLKSQYSVTVHDNLI 623
               L  +  +T++D  I
Sbjct: 596 FSNSLMQEAGITLNDAAI 613


>gi|126737880|ref|ZP_01753610.1| hypothetical protein RSK20926_19602 [Roseobacter sp. SK209-2-6]
 gi|126721273|gb|EBA17977.1| hypothetical protein RSK20926_19602 [Roseobacter sp. SK209-2-6]
          Length = 613

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 138/631 (21%), Positives = 262/631 (41%), Gaps = 32/631 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   +++ S+T+V  I + +L V    +G  +   SVS    V  VG ++V    +    
Sbjct: 1   MAAGMKQLSKTFV-WILMGMLIVGLAGFGAVNFSGSVSS---VALVGDEEVSVEEYFREL 56

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++E   + Q+ G VV   +  + GLD+ +L  L+S A LD  +  +G+      +  E+ 
Sbjct: 57  QREQRSLQQQTGQVVTLAQMTAFGLDRAVLGRLISLAALDNEVNSLGISIGDENLLDELT 116

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F G    F  + +   L    + E E+     K  +RT V G  +      + L D
Sbjct: 117 QIPSFQGPSGNFDREAYRFALQNANLTEAEFEADLRKEAARTLVQGAIISNAEMPSTLAD 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
              ++    RS  Y++L           P +A L  ++E   + +R PE K+I+Y     
Sbjct: 177 TLTKYIGARRSFSYVLLEPAQFSLIQIVPDDAELKSFYEANPEAFRLPETKQITYARLSP 236

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298
                 IE+  + L+A YE+ K++Y  PE R VE+LVF +Q  AD A   L+ G   F +
Sbjct: 237 DMILDGIEVDAEALKALYEERKDQYQVPERRLVERLVFSDQAAADRATADLQAGTVTFEE 296

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           L   +G  L DI +G  +KE +   +        A  G  +  +    G  I  ++    
Sbjct: 297 LVGNRGLDLQDIDMGDVTKEDLGAAAEGVFA---AAVGSVSSPLPSDLGPAIFRINGQLD 353

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
           +   SF+  + ++  ++   +A   +++  + +++ LA G +++E+     +    L   
Sbjct: 354 ARITSFEAAEAELRQELAADRARRVIEQQAESIDDILAGGATLEELKDEADMEVATLGWT 413

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
                 + G  +AA          V  +D P        L DGS   +++ E +P R   
Sbjct: 414 -----GIPGDGIAAYEGFRTAADAVTLEDFP----AVEFLGDGSIFALRLDEVLPERPEP 464

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
            +     V   W   + A+ ++++A +++      G    D+       L  T  ++R  
Sbjct: 465 FDAAKEKVLAAWDADRQAKAITARAGEILTATKNAGAFPDDLEVATEEGLTRTAYLDRT- 523

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFISY 593
                   D ++Q+F+     VK    E+  S VV  ++        E     ++ F + 
Sbjct: 524 ------PADMMNQIFTMTPGEVKIITGED--STVVVSLSEILPAEEGEEMALMREAFTAQ 575

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           L Q ++  L  + ++  + + +  +    + 
Sbjct: 576 LDQALSNALFQAYVSDAQLRAAPRLDQQALN 606


>gi|300721987|ref|YP_003711267.1| peptidyl-prolyl cis/trans isomerase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628484|emb|CBJ89049.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
           outer membrane proteins [Xenorhabdus nematophila ATCC
           19061]
          Length = 626

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 117/639 (18%), Positives = 252/639 (39%), Gaps = 34/639 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+   V KI L ++ + FL+ G++  L S SGS     V  Q +  +    ++
Sbjct: 1   MMDNLRTAANGPVLKIVLALIILTFLLTGVTGYLSSESGS-YAAKVNGQTISRAELEQAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            QE  ++ +++G   +   S+  +   + ++ LD L++   ++Q+   +GL A   +V  
Sbjct: 60  LQEKDVLQERLGDQFSALLSDEQQVRQIRRQSLDRLINTVLIEQYANKLGLSASDDQVAE 119

Query: 118 EIARSPLFHGKDNKFSHDVFV---SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           EI  +      D KF +  +    + LAR  I+   +     K L    ++ + +G    
Sbjct: 120 EIRNTSFLQ-TDGKFDNKKYQDYLNMLARSNISPDHFAAQVRKELINRQLMQVLMGSEIA 178

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
               + Q      + R+V +  L  + + A    ++  L  ++      +  PE  +ISY
Sbjct: 179 LPTEIKQEVMLILQERTVRFATLELKSLEAQQKVTDEELKNYYSANSKRFTVPEKVKISY 238

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           I  D  ++ K I +S  +++  Y+ N  KY +PE +    +   +   A      L KG 
Sbjct: 239 IKMDAVDELKNITVSEADIEKYYKNNLSKYTTPEQKKYSFIQLVSDSAAKSVLDELNKGA 298

Query: 295 KFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            F QLA E+            LG   +  +P+        +L +KG  + ++  S  Y I
Sbjct: 299 DFSQLAAEKSTDKFSAQKGGDLGWMEESSLPN---ELKSANLTQKGQLSEIVKLSNAYAI 355

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
             + +IKP       ++  +I   ++  K+ +   +  +++ +  A     + ++  EK 
Sbjct: 356 FRLDDIKPQVIKPLADIHAEIDKIVKQEKSVDAFYDLQRKVSD--AAANDNESLAAAEKA 413

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQI 468
                   D+  +D    ++      + +       D     +    +++       V++
Sbjct: 414 AGYAAVNTDWFDRDHIPADINFSQVVQAIFSGNLIDDKGATGTNSDVISVEGDRAFIVRV 473

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
            +  P   +   +  +++ +  K  K  +++  ++ +L++   KEGK      K  G   
Sbjct: 474 NDVKPETVQPFGQAKSEMAELLKRQKAEKQLQVESEKLLVAL-KEGKG-EQALKAAGIQF 531

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGP---VEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
                I R    ++          F+ P      V+    ++ +   V  +   KV P  
Sbjct: 532 GQPTVIKRFPQTHQ-----ATDIAFTLPHPKEGKVQYGLAQDEIGNAVL-IQLDKVIPGS 585

Query: 586 EKDKFISYLTQ----MMNKDLLDSVIAYLKSQYSVTVHD 620
             D+ I    +         +L+S++  L+ +  +    
Sbjct: 586 ISDEQIKQYQEGYQYQTGNMMLESLMINLRDEADIKFGQ 624


>gi|323700040|ref|ZP_08111952.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp.
           ND132]
 gi|323459972|gb|EGB15837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           desulfuricans ND132]
          Length = 633

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 116/640 (18%), Positives = 237/640 (37%), Gaps = 36/640 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           MLE++R+ +  W+ KI   ++ + F+  +G+S    + SG  TV +V  Q +  + +   
Sbjct: 1   MLEVMRENASGWIVKILFAIIIIVFVFAFGMSG--LNSSGDPTVATVNGQAITRAEYEAM 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +++    +  +    +   + RS    + +L  L+S   L      +G+ A    V   I
Sbjct: 59  YQRAAENLR-RTNPDLPPAQTRSPEFKQMVLGELISQKLLLGEAAKLGIRASDKEVAAGI 117

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
                F   +  F    + + L    +   ++ ++Y + L+   V          S    
Sbjct: 118 GAVDAFKDANGNFDQQRYQTALRDIRMTPGDFEENYRRDLTMEKVKDAVGVPADLSESQA 177

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
            Q   +  E  ++DYI +               +  +++  +D ++ P    +  + F  
Sbjct: 178 RQIFDWLGETAAIDYIEVLPTDFRNEIKIGETEIEAYYQANQDRFQIPAQVTLRTLAFTP 237

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEA----DEAF 287
               K   +++DE++A Y  NK+    P       ++          +Q++A    D+ +
Sbjct: 238 ASLAKFQTVTDDEIKAYYAANKDSLEEPAQVHARHILVAVKESDSQADQEKAKARIDKLY 297

Query: 288 QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q  K G  F +LA++      + +   LG F K  +       + F+L K G  +  +  
Sbjct: 298 QEAKAGADFAELAKKNSDGPSAPNGGDLGWFGKGAMI-PDFEKAAFALNKGG-VSEPVRT 355

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ I  V + K   T +F E K +I  ++   KAS++  +   +  + L  G S+ +I
Sbjct: 356 QFGWHIIMVEDKKEGTTKTFDEAKDEIKARLAEEKASDQANDLLDQATDRLVSGMSLTDI 415

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           +    + ++    +             A          V G     +    VA+ +G YM
Sbjct: 416 ASELGLETVTTDPMPAQFLG------QAFGMNADAAKAVSGLTPGQAYKSPVAV-NGGYM 468

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            V+  E I      L  V   +    +  K AE    +A ++    +  G +     K  
Sbjct: 469 LVEKVEDIAPSIMALNLVRQTIVNTLENQKGAELAGQEAEKIHAALT--GPDAEAAAKQY 526

Query: 525 GASLLTTNQINRMDNENKFF-GYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVG 582
            A + T+   NR  N  +           F+       K      G   VV ++      
Sbjct: 527 AARIKTSRPFNRQGNIPELGQSEPLTKAAFNAEDNGWFKLVYTMPGGGAVVARLNKRIPA 586

Query: 583 P----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           P     ++K  +++   Q   ++ + + +  L     + +
Sbjct: 587 PEKTWEEQKQFWLTQAGQNYRREAVAAFMDDLSKNAQIDI 626


>gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isomerase D [Herbaspirillum seropedicae
           SmR1]
 gi|300074334|gb|ADJ63733.1| peptidyl-prolyl cis-trans isomerase D protein [Herbaspirillum
           seropedicae SmR1]
          Length = 639

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 116/644 (18%), Positives = 243/644 (37%), Gaps = 45/644 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + IR   +  +  + L+ +F  F  +GL      ++  + V  V  Q +    +  + 
Sbjct: 1   MFDFIRTH-QRLMQFLLLLFIFPSFAFFGLEGY-SRLTDDNGVAKVAGQTITKEEWDAAH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  + Q  G   +S+   S    + ILDNL++   L   +    L      +   I 
Sbjct: 59  RQQLERMRQVYGNQFDSKIFDSPQARRAILDNLIAQRALGAEVVASKLVVPDQVLQQSIL 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P     D KF ++ +   LA +G+  K Y     + ++   +             + +
Sbjct: 119 QIPGLTKADGKFDNEQYRVLLAAQGMTPKSYEAGLRREMAVQQLNAAIQTTAFAPKTVAE 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                  + R+V  +        +    S+ +L  +++K    +  PE   I Y++ D  
Sbjct: 179 NLSALNDQERTVQMLNFKPDSYASQVKLSDEMLKDYYDKNSARFETPEQADIEYVVLDAA 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AF 287
               +  +++D+++A YE+NK+ Y + E R    ++   +K+A                 
Sbjct: 239 AVAAQAAVTDDDIKAYYEQNKKLYATEEQRRASHILIAVKKDASAADQAAAKSKAEGLVA 298

Query: 288 QSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           Q  K   +F +LA+    + G + +   LG F K  +      D+ FSL K+G+ +  + 
Sbjct: 299 QLRKNPGEFAKLAKANSQDPGSAENGGDLGYFGKGAMVKP-FEDAAFSL-KQGEISDPVQ 356

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMD 402
             FGY I  V+ IKP+     + VK +I ++++   A++K  E   +    +   G S+ 
Sbjct: 357 SDFGYHIIEVTGIKPAAVKPLESVKAEIGSEIKKQIAAKKYSEMADQFNNLVYENGDSLK 416

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS---KDHTVALP 459
            +S + K+       V        G     +PY           DD +        V   
Sbjct: 417 AVSDKLKLKIQTATGVTRTPNPAAGP----LPYNNAKFLTALFTDDVIKAKHNTEAVQTA 472

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
             + +  ++    P   R  +EV  DV+K     +  + ++ KA Q  L   +       
Sbjct: 473 PNTLVAGRVTSYKPVTKRPFDEVKADVQKAVLAQQ-EQLLAVKAGQERLAQLQ------- 524

Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
             K+  A       ++R+  +      +  + V       +  +      G+ Y +++++
Sbjct: 525 -AKDDAAGFSEAKVVSRVKADGWT--QEAFNAVMKADTAKLPAYVGAETPGMGYQIYRIS 581

Query: 578 NSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
             +         +      +   +++    S + YL+ +    +
Sbjct: 582 KVEQPKTVDAARRQAEREQIASALSQQEALSYLDYLREKAKTKL 625


>gi|56479244|ref|YP_160833.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
 gi|56315287|emb|CAI09932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
          Length = 633

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 120/651 (18%), Positives = 268/651 (41%), Gaps = 46/651 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + +R   R  +A+I L +L VPF  +GL     S  G + + +VG  K+  + F  + 
Sbjct: 1   MFDAVRNNKR--IAQIILALLIVPFAFFGLDSYFTSGPGGNEIATVGGSKISMNEFDQAL 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   + Q +G  V+     S  + + +++NLV+   L     D GL     ++   IA
Sbjct: 59  RDQQDRLRQSMGGQVDRAMLESEAMRRSVVENLVNQRLLAMHAADSGLVVTQQQLQQVIA 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  +D +FS + + + +  +G+    +     + L    V          +   + 
Sbjct: 119 TVPAFQ-EDGRFSLERYEAAVRAQGMTPAMFEARLGQDLRVQQVALAVGQSAFTAQASVQ 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      E R V  +  +     A  +  +    ++++   + +  P   R  Y++FD +
Sbjct: 178 RFLEAQLEERKVSELKFSPDAFLAQVELPDDAAKKYYDANPERFERPARLRAEYLVFDEN 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------------PNQKEADEAF 287
              K++ +S+DE++  YE N  ++  PE R    ++               ++K A    
Sbjct: 238 ALLKQVSVSDDEIRKFYEANTARFGQPEERNARHILIEAAADAPAEEVAKASEKAAALLA 297

Query: 288 QSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           Q     ++F +LA+    + G +     LG F +  +   S  D++FSL +KG  + V+ 
Sbjct: 298 QVRANPERFAELAKAESQDPGSAARGGELGFFGRGAMVK-SFEDAVFSL-EKGQISDVVR 355

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             FG+ I  V +IKP+    F+EV+ +IA +++   AS ++ E  +     +      D 
Sbjct: 356 SDFGFHIIQVVDIKPAKARPFEEVRDEIAEELKRQAASRRLAEQAEHFANLVYEQA--DS 413

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDG 461
           +    + + +++   D+  ++   +        E+LL  +F  +   +  +   V +  G
Sbjct: 414 LQPAAQELGLEIRQTDWISRE---EGSIGGFKNEKLLNGLFSDEAVKNGRNVEAVEVSRG 470

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
           + +  ++++   A+    EEV   ++K  +  + ++   ++    +   +K        G
Sbjct: 471 TLVSARVRDFEAAQRLPFEEVKASIEKQLRAEEASKLAVARGEAALAALAK--------G 522

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNS 579
           +    +      + R   E        I  VF      +  +         Y VF++ + 
Sbjct: 523 EQASGAWSEARVVRRGSPE---LAPAAIDAVFGAAESKLPAYAGVAMPEGGYSVFRIESV 579

Query: 580 KVGPVQEKDKFISYLTQM----MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
               + + D  +  ++Q     + +   ++ +A L+ +Y V +++ +++  
Sbjct: 580 TRPELAKDDPRLQAVSQQYQRLIAERDFNAFLASLRERYEVEINEAVLRVA 630


>gi|261346360|ref|ZP_05974004.1| peptidyl-prolyl cis-trans isomerase D [Providencia rustigianii DSM
           4541]
 gi|282565674|gb|EFB71209.1| peptidyl-prolyl cis-trans isomerase D [Providencia rustigianii DSM
           4541]
          Length = 622

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/633 (16%), Positives = 250/633 (39%), Gaps = 26/633 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E +R  + +   K+ L ++ + F++ G++  +   S S+    V  Q +       ++
Sbjct: 1   MMEDLRTKANSPFIKVLLAIIILSFVLTGVAGYVIGGS-SNDAAEVNGQPISREQLQQAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +QE   + + +G       S       L  + L+NL++   ++Q+  ++ L A   ++  
Sbjct: 60  QQERQSLQEYLGDKFAEVASNDEYMKELRTQALNNLINTQLINQYANELNLSASDKQIEQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I    +F   D KF  + +   L+R  IN   +     + L R  +   F G       
Sbjct: 120 AIFAMQIFQ-TDGKFDSEKYREILSRYNINADSFAAQIRQDLVRAQLGKSFTGTEFALPS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +      + + R V   +L    V A    +   L  +++  ++++ +PE  ++SY+  
Sbjct: 179 EVKAYAELFMQQREVRTAMLPLAEVQAKQTVTEEELKAYYDANQNSFISPEQVQVSYVEM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D     K   ++++E+   Y++N + +   E +    +   ++K+A      LK G  F 
Sbjct: 239 DAASMPK-ATVNDEEITTYYQQNLKNFTKAEQKLYSMIQVASEKDAQALETELKNGADFA 297

Query: 298 QLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA E+       S    +G       P   ++    +L +KG  +  I     YV+  +
Sbjct: 298 ALAAEKSTDKFSASNKGVIGWMEAASTPSEIIS---ANLTEKGQVSAPIKVQDNYVLFRL 354

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +I P       EVK  I   +   K+ ++  +  +++ E  A     + ++  E +  +
Sbjct: 355 DDITPEAIKPLDEVKDSIKTSLTQDKSIKQFYDLQQKVSE--AATNDNESLASVESVSGL 412

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
            +   ++  +    + +       ++   R+  K+     +  V   +G     V++ + 
Sbjct: 413 KVSNTEWFDRKNPPEALNFPKVINEIFSERLIDKNGATGINSDVINVEGDRAFVVRVTQY 472

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                   ++V +++    K  K   ++ +  ++L+ E  K GK    + K  G    + 
Sbjct: 473 KAEMTEPFDQVKSEIATLVKRQKAFTQLKADGDKLITEL-KAGKGDEAL-KAAGTQFGSV 530

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGP--VQEK 587
             ++ +           ++   + P++    + I      + +V ++    +G    +E 
Sbjct: 531 QTVSFIAPATDVTD---VAMKMTPPIDGKPTYSIAYDKQDNLLVVQLDKVTLGQPTAEEL 587

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
            +  S    MM+  + +S++  L++   + + +
Sbjct: 588 SQLGSQYQAMMSSVVNESLMQNLRANAKIEIQN 620


>gi|283851044|ref|ZP_06368329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp.
           FW1012B]
 gi|283573690|gb|EFC21665.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp.
           FW1012B]
          Length = 650

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/650 (18%), Positives = 252/650 (38%), Gaps = 44/650 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK +++W  KI   ++ + F+ WG+    F    ++ + ++  Q V    +  ++
Sbjct: 1   MLDPMRKYAQSWGIKIVFGLIILVFVFWGVGS--FQGDKATVLATIDGQPVLIKDYEKAY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ L ++  K    V  +  +  G   ++  N+V+   L+     +G+      +  EIA
Sbjct: 59  QENLRLVKNK-NPNVTDKDLQDGGFRWQVFSNMVTTRLLEDQAAKLGIAVSPEELRAEIA 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F  +  +F    + + L    +   E+   + + L    +          ++    
Sbjct: 118 KIPAFQNESKQFDAKRYENLLQANDVTPGEFEADFRQNLLLEKLAAYVSLPAAVTDTEAR 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               F  E  ++ YI            P+   +  ++E  KD +  P   RI Y+ F   
Sbjct: 178 SIFDFMREQATIHYIPFKTEDFTKGVAPTADQIKAYYEARKDQFATPAQIRIDYVEFTPK 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288
              K  E+++ +++  Y+ N++KY  PE   V   +     +A             +   
Sbjct: 238 ALAKPAEVTDADIETAYKANQKKYAKPEQVRVRHFLVMLPADAPKEAVDAATAKLKDLAA 297

Query: 289 SLKKGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
            LK G  F  L  +         G+  + +  GS  KE+    +  +  FSL KK +   
Sbjct: 298 KLKAGADFASLLPKNPNNPEGLIGEDWAWLPKGSLPKEF---GAFEEKAFSL-KKDEIGE 353

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
            +  + G  +      + +   +  EVK +I + +   KA++K+ +    ++E +A G  
Sbjct: 354 PVRTALGLHLIQAGEHQAAGEKTLAEVKDEIRSDLAEQKAADKLTKALDTIQEKVAAGED 413

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
           + + +  EK+   +    DF  KD      A +   EQ L  +F        D  ++  D
Sbjct: 414 LKKAAAEEKL---ETKTTDFFAKDT---PPAELGLSEQALAALFTFKQGGGADQPLSTQD 467

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
           G ++  ++ E+ PA    +E V   +K      +  +   ++A+  V +  +  +    +
Sbjct: 468 G-FLLARVAETKPAGFEPMEAVTDVIKDRLVAEEAQKRARAQADT-VAKAMETEEGKAKV 525

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQ-VF--SGPVEMVKCFPIENGLSYVVFKVT 577
             +    +  +    R            + Q  F  +GP      + + +G  YV+  + 
Sbjct: 526 LADYKDKIQISQPFTRQGFIPALGMAPVLVQTAFEATGPGWFKAAYAVSDG--YVLAGLE 583

Query: 578 NSKVGPVQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
                       EKD+++S L Q    +L  + +  ++    V + ++ I
Sbjct: 584 KRMPAETALWDKEKDRWMSTLAQSKQSELFKAYLQTVQQTAKVEILNDAI 633


>gi|114330677|ref|YP_746899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
 gi|114307691|gb|ABI58934.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
          Length = 630

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/645 (16%), Positives = 266/645 (41%), Gaps = 45/645 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + +    +  + +I L +  +PFL WGL      +  +S V SV  +++    +  + 
Sbjct: 1   MFDFV--NQKKTIVQIVLFIALLPFLFWGLESY-QGMGSASDVASVDGEEISRQEYEQAL 57

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   +   +G   ++    S  +   +L+NL+    L      +GL     R+  EI 
Sbjct: 58  RNQQENLRNMLGENFDASLLDSPQMRMAVLENLIQQKLLRHEAGRVGLAVLDSRLTAEIQ 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
              LFH +D+KFS++ +   L R+G++   +       L R  ++    G +  S  + D
Sbjct: 118 NIALFH-EDDKFSYERYRELLQRQGMSPAMFEARLAGDLMRQQLLEGITGSVIVSKTVAD 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +          ++ + +N       A+P  A +  +++ ++ ++  PE  RI Y++  + 
Sbjct: 177 RIASLSETKYEINRVTINPEQYINQAEPDEAAIQSYYDSHRQDFTLPERVRIEYVVLSLE 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288
           E  K+ +IS++E++  ++++++++   E R    ++               + +A++  +
Sbjct: 237 ELAKQEQISDEEIKKYFDEHQDEFGRVEERRASHILLTVPVDATEEQKAAIKAKAEQILE 296

Query: 289 SLKKGKK-FIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            +K+    F +LA+E     G + +   LG F++  +   +  D+ F + +  +    + 
Sbjct: 297 QVKQDPDKFPELAKELSEDPGSAKAGGDLGFFARGLMVK-AFEDTAFEM-QLDEIRGPVE 354

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             FG+ I  ++ +K +    F EVK+ I   ++  KA+++  E  +     +   +  D 
Sbjct: 355 TPFGFHIIRLTAVKDANVAKFDEVKEGIRQTLQRQKAADRFGELSEDFSNIVYEQS--DT 412

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDG 461
           +    ++ ++ +   D+  ++ K   V A    E++L  +F +           + +   
Sbjct: 413 LQPVAQMFNLSVQQSDWIDRNSKEPSVIA---NERMLQAIFSEGAIRDHYNTEAIEVAPD 469

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
           +++  ++ E  PA  + +  V   + +  K    A     +  Q + +            
Sbjct: 470 TFVSARVLEHRPASVQSIGLVKDKIIELLKQQIAAATAEEEGKQKLAKLQ---------A 520

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNS 579
                SL     +     + +    + +  +F   VE +  +         + + ++   
Sbjct: 521 GETDESLEWGEPVEISYTQKRGSDEEMLHALFQTDVEKLPAYTGVKTKKGGFDLIRINQV 580

Query: 580 KVGPVQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           KV   +    +    I+ L Q+  ++ L++ +A L+ +Y V +  
Sbjct: 581 KVPAAESGSSQYTMLINQLQQVHGQEELNAYLAGLRQRYEVKIKP 625


>gi|255262468|ref|ZP_05341810.1| peptidyl-prolyl cis-trans isomerse D, putative [Thalassiobium sp.
           R2A62]
 gi|255104803|gb|EET47477.1| peptidyl-prolyl cis-trans isomerse D, putative [Thalassiobium sp.
           R2A62]
          Length = 622

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/625 (19%), Positives = 262/625 (41%), Gaps = 27/625 (4%)

Query: 6   RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
           R  +  +   I + +LFV  + +G +          ++ SVG +++   ++ N   QE+ 
Sbjct: 3   RSKTSNFFVWIVIGLLFVGLIGFGATGL---SGNIRSIGSVGDKELDLQTYANQLNQEIR 59

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
               + G  V+   A+++GLD+ +L  ++    LD     +GL     RV  +I   P F
Sbjct: 60  AFEAQTGSSVSFPEAQTIGLDRAVLARVIGVRALDNEAAQVGLSVGDARVRAQILEIPSF 119

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
            G   +F  D +   L   G+ E  +     + ++RT + G  + G+  S+   +    +
Sbjct: 120 RGPSGEFDRDAYRFSLGNNGLTEATFETQLREEMARTVLQGAVLTGVEASDTYAETLSGY 179

Query: 186 YFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
             E+R   ++ L+   +       ++  L  +++    ++  P  KR++Y+         
Sbjct: 180 IGESRDFTWVRLSQADLETELTAATDEQLLDYYQANPIDFTEPAKKRLTYVSLTPEMIVD 239

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303
            +EI    LQ  Y    + +  PE R VE+LVF +Q++AD A   L +G+  F  L EE+
Sbjct: 240 TVEIDETALQDLYNTRLDTFVQPERRLVERLVFSSQEDADAAAARLTEGEITFDALVEER 299

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           G +LSDI LG  ++  + D    D++F+ A+ GD    +    G  +  ++ +  +   +
Sbjct: 300 GLALSDIDLGDLAQPELGDA--GDAVFA-AQTGDVVGPLPTDLGPALFRMNAVLSAQETT 356

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
           +++   ++  ++   +A   + +  + +++ L  G +++E++   ++V   +     +  
Sbjct: 357 YEQALPELREELATERARRIIDDASREIDDLLVGGATLEEVAAETEMVLGQIDWFAGSE- 415

Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
               + +A           V   D P          DG    +++ E+I A    LE++ 
Sbjct: 416 ----EIIAGYDNFRAAANAVTSNDFP----DIERFEDGGLFALRLDETIDAELVPLEDIR 467

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
             V   W+T +T+  ++ +A  L+ +   EG+    +G            + R D     
Sbjct: 468 GKVVAGWETQETSRLLNEQAQGLI-DQVNEGRTLVSLGVEANVE----TGMTRTDFIAGA 522

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK----DKFISYLTQMMN 599
            G   +  VF+  V   +       +  V   V  +     +E     D       Q + 
Sbjct: 523 PGQ-MLPSVFALDVGGSEILEAFGAVYLVRLDVIGAADTEGEEATARLDLLSQQAEQGIA 581

Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +DLLD+    ++++  + ++   + 
Sbjct: 582 QDLLDAYSRAVQAKAGIELNQAALN 606


>gi|99080985|ref|YP_613139.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. TM1040]
 gi|99037265|gb|ABF63877.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. TM1040]
          Length = 611

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/627 (22%), Positives = 273/627 (43%), Gaps = 30/627 (4%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           ++K S+T+V  I + +LFV    +G   A+     + T+ +VG   V    +  + +QE 
Sbjct: 1   MKKLSKTFV-WILMGLLFVGLAGFG---AINVSGTTRTLATVGDATVSVDDYARALQQEQ 56

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             I  + G  +   +  ++G+D+ +L  LV+ A LD  + +IGL      +  EI R   
Sbjct: 57  RAIQAQSGQSIPLSQLIAMGVDRGVLSGLVATAALDNELTEIGLSVGDEVLLEEITRISA 116

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F G D  FS D +   L   G++E E+        +RT + G   GG R   +L +    
Sbjct: 117 FQGSDGSFSRDNYRFALDNAGLSEAEFEADMRSETARTLLQGAITGGTRMPAVLGETLTN 176

Query: 185 FYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
           +    RS  Y+ L   +VP     P+   L  ++E + +++  PE K I+Y+        
Sbjct: 177 YIGARRSFSYVRLAEANVPLTAIAPTEDALKAYYETHIEDFTLPETKVITYVALRPDALV 236

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEE 302
            ++E+    L+  YE+   ++  PE R VEQLVFP++  A  A   L   G  F  L  +
Sbjct: 237 DQVEVDETALRGLYEERDAEFNVPERRLVEQLVFPDEDAAQTAKAELDVGGTTFETLVAD 296

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +  SLSDI +G  +   +   +  +++F+ A  G     +   FG  +  V+ +  +   
Sbjct: 297 RELSLSDIDMGDVAIGDLG--AAGEAVFA-ADVGAVVGPLPSDFGPALYRVNGVLEANFT 353

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
           SF+E    +  ++ + +A   ++   + L++ LA G ++++++  E    + L  +D+  
Sbjct: 354 SFEEALPVLREELALDRARRLIESRAEGLDDALAGGATLEDLAEEEN--GVVLGQLDWTA 411

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
                 ++AA          V  +D P        L DGS   +++ E +P R    E+ 
Sbjct: 412 NTTD--DIAAYDTFRNAAEAVTTEDFP----EVGYLEDGSLFALRLDEVLPPRPEPFEDA 465

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
            T V + ++  + A+ ++++A Q+          F +     G  ++    + R    ++
Sbjct: 466 RTAVSEAYEGDRIAKALAAQAEQIKTATEGNNGQFPE-----GREVIEQTGLTRTAYLDQ 520

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS-----YLTQM 597
               D ++QVF   V  V+      G   VV ++            +F+S      L Q 
Sbjct: 521 T-PVDLLNQVFEMEVGEVRVVSDAEGT--VVVRLDEILPPDDGNDMQFLSQALGDQLNQS 577

Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           ++ ++    +  ++++    V+   + 
Sbjct: 578 LSNEIFQIYLQSVQTRARPQVNQQAVN 604


>gi|300691410|ref|YP_003752405.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
           solanacearum PSI07]
 gi|299078470|emb|CBJ51122.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
           solanacearum PSI07]
          Length = 637

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/637 (16%), Positives = 231/637 (36%), Gaps = 33/637 (5%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           +  + L+++F  F+ +G+      + GS     VG   +  S      +++   + Q +G
Sbjct: 1   MFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRVREQTERLRQMLG 60

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL---FHGKD 129
              +  +     + + +LD ++    +      + L     +V   I + P        D
Sbjct: 61  AQYDPRQFEGSQMRRDVLDGIIQQRVMVNEASRVNLSVADSKVRETIEQIPAVAQLRKPD 120

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
            KF  D ++  LA +G+  +++       L    +    V        L+D+      + 
Sbjct: 121 GKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSTAFVPKSLVDRLIEARDQQ 180

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           R V  ++L            +  +  +++ ++  +  PE  +  Y++F   +  K+I ++
Sbjct: 181 REVQALLLKPADYAGKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVFSGEDMMKQIPVT 240

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQSLKK-GKKF 296
            ++L+  Y++N  ++ + E R    ++               +K A+E    ++K    F
Sbjct: 241 PEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEEVLAEVRKTPGNF 300

Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            +LA++             LG  +K         +++F+L + GD + V+   FG+ I  
Sbjct: 301 AELAKKYSGDPGSAAQGGELGFLAKGATV-PPFENALFALKQPGDISDVVESDFGFHIIK 359

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIV 411
           +  +K     S + VK ++  ++R   A++K  E        +     S+  ++ + K+ 
Sbjct: 360 LEEVKGGGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSDSLKPVADKLKLQ 419

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSYMWVQIK 469
                 V    +        +    +++L  +F  D   +  +T  V +   + +  +  
Sbjct: 420 VQTADNVT---RVPNPALANSPINNDKVLKALFADDVIKNHRNTQAVQVGPTTLVAARAV 476

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           E  PA  +KL +V   VK      ++A  ++ KA +  L   K+  +    G     S  
Sbjct: 477 EHRPATVKKLADVREQVKAKVLAEQSA-VLAKKAGEEKLAAVKQSNSAEGFGAAQTVSRQ 535

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
               +               +     PV +           Y + KV          +  
Sbjct: 536 QAQGM-----PPVALAAILRADAVKLPVTIGVDLGARGYALYRINKVLPPANVDPARRAA 590

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
               L Q   +   ++    LK++  V V+  +I   
Sbjct: 591 DAQQLAQAAGQADFNAYYEALKARSKVKVNSAVIDAA 627


>gi|114777815|ref|ZP_01452746.1| peptidyl-prolyl cis-trans isomerase D [Mariprofundus ferrooxydans
           PV-1]
 gi|114551806|gb|EAU54346.1| peptidyl-prolyl cis-trans isomerase D [Mariprofundus ferrooxydans
           PV-1]
          Length = 636

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/648 (17%), Positives = 253/648 (39%), Gaps = 35/648 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE +R  ++ W+AKI L  + + F++WG+ D       +  + +V  + +  + F  ++
Sbjct: 1   MLESMRSHAQGWIAKIILGGIALSFVLWGVGDYFLG-GKTEPIATVNGKAIGGAEFYQAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++L      +G   +S    S+G+ +  L  L++   +    + + L A    V   + 
Sbjct: 60  ERQLNAYRSMLGKQYSSALMDSLGVKETTLQTLINRRIMLDTAQQLHLAAPASVVLATVH 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKE-YIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
             P F      F    + +     G +  + Y +     +    +    V  +  S   +
Sbjct: 120 SDPSFQSARG-FDVQRYHALTRNMGFSSAQDYENDLRLNIMVDALHKALVDSVHVSETEI 178

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                  ++ R +  +V++          S+     W+E +K NY++P    ++ +  D 
Sbjct: 179 RDRFNHDYQQRVLAAVVVDPATQLNKVKVSDEQAKAWYEAHKQNYKSPLRINVNTVEIDP 238

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAF 287
            +  + +++   E++  +EK K ++  PE R  + ++    + A            + A 
Sbjct: 239 RKLAEDVQVDESEVRKAFEKRKAEFSRPEERKAQHILIKVAENAPEAVRAAARKKIEAAQ 298

Query: 288 QSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             +K G+ F  +A+   E G + S   LG F +  +   +   ++F++ K G  + ++  
Sbjct: 299 ARIKAGEDFSAVAKAVSEDGTASSGGELGWFKQGSMV-TAFDQAVFAMDK-GQVSDIVET 356

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FGY +  + +I+P+   S+ +VK  I   +   +A+E+  +  + L+E L +  S+   
Sbjct: 357 PFGYHLIRLEDIRPAHEASYDDVKDGIRQDLVKARAAEEAYKLSQDLDEALGMEDSLKAA 416

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           +      S+DL  ++             +    ++  + F    P      V   DG Y+
Sbjct: 417 A-----TSLDLKTINSGLVSRDEALAVPVLSDPEIAAKAFST-LPGQAVEIVETSDGRYV 470

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            V++ E +        +V   V  D +    A++ +  A+++       GK+  ++ +  
Sbjct: 471 AVEVTERVEPDVLPYAKVARRVLTDARLDAAAKQAAVIADEI---RHSTGKSLDELAQQY 527

Query: 525 GASLLTTNQINRMDNENKF--FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
           G +   +  +      +         + Q FS          +     Y   +V      
Sbjct: 528 GQAKYISKPVRSNGQGDNASWLSQALLKQAFSTKAGAWVDQSVHVPQGYAAVRVQQVIAA 587

Query: 583 PVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
              E    KD+  + + +          +A ++ +Y +T +   + RY
Sbjct: 588 SEAEYNKQKDQIAAEVRKAKGAARFARWMASVRDRYEITTNPKELDRY 635


>gi|221135500|ref|ZP_03561803.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola sp.
           HTCC2999]
          Length = 626

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 101/635 (15%), Positives = 236/635 (37%), Gaps = 33/635 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE +R+  +   A I + ++ + F+  G+   L S    +    V  + +   +   ++
Sbjct: 1   MLERMREGLQGPWAMIIVALIVLSFVFAGVGSYLAS-PVDTAAAKVNGEDISARALDQAY 59

Query: 61  KQELGMISQKIGFVVNSERA---RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  + G  ++S  A         + IL+ LV+   ++Q  + +GL     ++  
Sbjct: 60  QNERARLESQFGEGISSLFANPEYLANFRQGILERLVADKLVEQKAQALGLRVSDTQIKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F      F++D +++ L + G    ++ ++    +++  +    +        
Sbjct: 120 TILSMPEFQ-VGGVFNNDRYLAVLRQAGFQVDDFRNYMRNTMTKEQLSRALLATDFVVPN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +        + R V Y  +   +     + S+  +T +++   D Y   E   I Y+  
Sbjct: 179 EVITQLNLGRQTRDVKYATIPTANFADTIELSDLDITNYYQTNIDTYDTQEQVSIEYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSL 290
            V +    +  ++ +++  Y+ N   Y +   R V  ++  +       + +  E    L
Sbjct: 239 KVSDLMDGVNATDAQIEEYYQFNIANYRTEAQRRVSHILIESGDDTAAAEAKIAEVQAKL 298

Query: 291 KKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             G+ F +LA+           G    F      D +  +++ +L   GD + ++   FG
Sbjct: 299 NAGEDFAELAKTYSDDTFSAENGGDLEFITIGDLDPAFDEAVLALENVGDVSDIVATDFG 358

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406
           + +  +++  P+    F +VK +IA  +++  A+E      + + E       ++++++ 
Sbjct: 359 FHLITLTDFTPAEVTPFVDVKDEIAEAVKLEIATEAFFVQQQTMAELAFEVPDTLEDVAS 418

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
                 +  PL   +        V        +L   F  +          + L D   +
Sbjct: 419 AVDKAIVKTPLFSAS-------NVPPALNNSAVLANAFSAEFIEENMNSDVIELNDEHVL 471

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            ++I +  P R R LEEV   V     T K+ E   +  NQ++   S+E  N        
Sbjct: 472 VMRIAQYEPQRTRSLEEVKEQVVTALTTQKSQEAALAYVNQVIAASSEEQANL---LSQQ 528

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF---PIENGLSYVVFKVTNSKV 581
           G +L   + + R   E        +  +F+      +     P  +     +  V +   
Sbjct: 529 GLALTELSSVPREGLEG--IDSAAVEVLFTLSQSNAQAAVTLPSGDVAMVELVAVNDVTT 586

Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
              +  ++  + +T    ++   + +  L +   +
Sbjct: 587 PDTELGEQLRNRMTGQRAQNSYQAFVDALTADAEI 621


>gi|259418802|ref|ZP_05742719.1| putative peptidyl-prolyl cis-trans isomerse D [Silicibacter sp.
           TrichCH4B]
 gi|259345024|gb|EEW56878.1| putative peptidyl-prolyl cis-trans isomerse D [Silicibacter sp.
           TrichCH4B]
          Length = 611

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/628 (22%), Positives = 282/628 (44%), Gaps = 32/628 (5%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           ++  S+T+V  I + +LFV    +G   A+     + T+ +VG   V    +  + +QE 
Sbjct: 1   MKNLSKTFV-WILMGLLFVGLAGFG---AINVSGTTRTLATVGDATVSVDDYARALQQEQ 56

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             I  + G  +   +  S+G+D+ +L  LV+ A LD  + ++GL      +  EI +   
Sbjct: 57  RAIQAQSGRSIPLSQLISMGVDRGVLSGLVASAALDNELGELGLSVGDEVLLKEITQISA 116

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F G D  FS D +   L   G++E ++ +      +RT + G   GG R   +L +    
Sbjct: 117 FQGSDGNFSRDNYRFALDNAGLSEADFEEDMRSETARTLLQGAITGGTRMPAVLGETLTD 176

Query: 185 FYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
           +    RS  Y+ L+   V     +P+   L  ++E + +++  PE K I+Y+        
Sbjct: 177 YIGARRSFAYVRLSENDVILTAVEPTEDELKSFYETHIEDFTLPETKVITYVALRPDALV 236

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEE 302
            ++E+    L+A YE+   ++  PE R VEQLVFPN+  A  A   L   G  F  L EE
Sbjct: 237 DEVEVDETALRALYEERDAEFNVPERRLVEQLVFPNEDAAATAKAQLDVGGTTFETLVEE 296

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +  +LSDI +G  + + +   +  D++F+ A+ GD    +   FG  +  V+ +  +   
Sbjct: 297 RELTLSDIDMGDVAIDTLG--TAGDAVFA-AEVGDVVGPLPSEFGPALYRVNGVLEANFT 353

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
           SF++    +  ++ + +A   ++   + +++ LA G +++++++ E    + L  +D+  
Sbjct: 354 SFEDALPTLREELALDRARRVIETRSEGIDDALAGGATLEDLAKEEN--GMVLGQLDWTA 411

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
                 ++AA          +  +D P        L DGS   +++ E +  R +  E+ 
Sbjct: 412 DTTD--DIAAYDTFRNAAEAITIEDFP----AVDYLEDGSLFALRLDEVLAPRPQPFEDA 465

Query: 483 LTDVKKDWKTVKTAEEVSSKANQL-VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
            T V + +K  + A+ ++ +A+Q+     S +G+   D        ++    + R    +
Sbjct: 466 RTAVTEAFKGDRIAKALAEQADQIKAATESNDGQFPED------HEVVEQTGLTRTAYLD 519

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS-----YLTQ 596
           +    D ++QVF   V  V+      G   VV ++  +         +F++      L Q
Sbjct: 520 QT-PVDLLNQVFEMEVGEVRVVSDAEGT--VVVRLDETLPPDDGNDMQFLTQALNEQLNQ 576

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            ++ ++    +  ++S+    V+   + 
Sbjct: 577 SLSNEIFQIYLQAVQSRARPQVNQQAVN 604


>gi|312796419|ref|YP_004029341.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI
           454]
 gi|312168194|emb|CBW75197.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia
           rhizoxinica HKI 454]
          Length = 638

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 108/646 (16%), Positives = 239/646 (36%), Gaps = 45/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + ++++       G+         S+ V SV  +K+  + +  + 
Sbjct: 1   MLDFFRNHKR-LMMFLLVILIAPGLGFVGVQGFRNFFDDSADVASVAGRKITRAEYEGAM 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE-- 118
           +++L    Q +G   +++   +  + + ILD+LV    L +  ED+ L A    V     
Sbjct: 60  REQLDRARQVLGANFDAKAIDTPEMRRAILDSLVQQRVLAKATEDLHLSASDQAVLRAEQ 119

Query: 119 -IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I         D  +  D +   LA +G+  + + +     L+   +             
Sbjct: 120 SIPAIAALRKPDGTYDVDQYKQLLAMQGMTPELFDERVRYQLASRQLPDGIQASAFAPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L  Q      ++R V  ++L          PS+  L Q+++ + D +  PE   + Y++ 
Sbjct: 180 LAQQLASLSEQSREVQGLMLRATDYADKVQPSDVQLKQYYDAHHDAFAMPERASVEYLML 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK----- 292
                 ++ + S  EL+  Y+ +  K+ +P       ++      A +A +   +     
Sbjct: 240 SADALAQRAQPSEAELKKYYDDHAAKFKTPGEVRASHILIAVAASASQAERDKARQKAES 299

Query: 293 --------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                    ++F +LA++             LG F    +     +D+ F L KK   + 
Sbjct: 300 ILAQVTAHPEQFAKLAQQNSDDPGSKNKGGDLGFFGPGMMVKP-FSDAAFKL-KKDQISS 357

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           ++   FGY I  V++IKP  T  F EVK  IA +++  +A++   E  +     +     
Sbjct: 358 IVQSDFGYHIIKVTDIKPEQTKPFDEVKATIATELKAEQATKAYVEQAEAFTNMVYEQSD 417

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+   + + K+      L+           +       +LL  VF  D   SK +T  + 
Sbjct: 418 SLKPAADKFKLTIQTATLMREGN---PALPLTRPLNNPKLLAAVFADDSVKSKHNTPAID 474

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           + + + +  ++ +  PA  +  + V   V++      +A++   +    + E  K     
Sbjct: 475 VGNNTLVSARVVDYKPASVQPYDTVAAQVRQKVVAQLSADKARQQGEAKLAEVQK----- 529

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
                   A      ++ R D          ++ +F    + +  +   +     Y +++
Sbjct: 530 ----SESTAGFSAVTKVTRADTRG--VPPQAVAAIFKVDPQKLPAYVGVDLGDAGYAIYR 583

Query: 576 VTNSKVGPVQEKDKFIS---YLTQMMNKDLLDSVIAYLKSQYSVTV 618
           V    +    +  +       + Q++      S +  L+++  V +
Sbjct: 584 VNAVDMPSSIDAQRLSGAQLQIGQVLGDAEWASYVDALRARSRVKL 629


>gi|237653309|ref|YP_002889623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T]
 gi|237624556|gb|ACR01246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T]
          Length = 631

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/649 (17%), Positives = 259/649 (39%), Gaps = 47/649 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E +R   R  VA++ L +L VPF  +G+         ++    VG   +    F  + 
Sbjct: 1   MFEAVRNNKR--VAQVILALLIVPFAFFGMDAYFSDSGSANEAARVGGTTIGAWEFDQAL 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + Q  G  V+    +S  L + +L+NL++   L  +  +  L     ++   IA
Sbjct: 59  REQQDRLRQDGGGQVDRALLQSAELRRAVLENLINQRVLALYAAENRLVVTPQQLQETIA 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F  ++  FS   + + L  +G+    +     + +    +V               
Sbjct: 119 GVASFQ-ENGSFSLQRYETLLRAQGMTPATFEARLAQDVRVQQIVAAVGDAGIVPQASAR 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      E+RSV    L+ + + A     +A ++ ++E     +  P   +  Y++FD  
Sbjct: 178 RFLDAQLESRSVREFRLSAKALAADVKVDDAQVSAYYEANPTRFERPARLQAEYLVFDRA 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------------F 287
             E+ +E+++D ++A Y+ N +++  PE R    ++    + A++A              
Sbjct: 238 AVERGVEVADDAVRAFYDGNPQRFGVPEERQARHILLALDQGAEQAEVDRVMAEARALVE 297

Query: 288 QSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           Q      +F  LA+E+ +          LG F++  +   +  D++FSL +KG     + 
Sbjct: 298 QLRADPARFAALAKEKSQDPGSAGNGGDLGFFARGVMVG-AFEDAVFSL-QKGVIGEPVR 355

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             FG  I  V++IKPS    F+ V+ +I  ++R  +A  +  E  ++    +      D 
Sbjct: 356 SDFGVHIVEVTDIKPSSVKPFEAVRAEILAELRAQEAGRRFAELAEQFSNTVYEQP--DS 413

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDG 461
           +    + + +     D+  +D     +A     E+++  +FG +      +T  + + +G
Sbjct: 414 LQPAAEALGLKTATTDWISRDSAPAPLAD----ERVISALFGDEAVQKSRNTEAIEIGNG 469

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
           + +  ++K   PAR   L+EV   + +  +  +   + +    +++    +  +     G
Sbjct: 470 TLVSARVKAFEPARRLPLDEVRERIVELVRIEQGRVKATRAGEEMLAALRRGEQPAARWG 529

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNS 579
           +             ++           +  VFS   E +            YV++++   
Sbjct: 530 EA-----------RKLQRGAPGLPAAAMQAVFSASAETLPVHVGVQSTEGDYVLYRIEAV 578

Query: 580 KVGPVQEKDKFIS----YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +   + + D  ++       Q++      + ++ L+ +Y VT++   +Q
Sbjct: 579 ERAQIGDADPRVAAVTGQYKQLLAGRDFGAFLSELRQRYEVTINPTALQ 627


>gi|66769563|ref|YP_244325.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66574895|gb|AAY50305.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 656

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 110/672 (16%), Positives = 233/672 (34%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L +PFL   + ++     G++ V  V              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +  +  S     ++LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   IA  P F   D KFS D + + LA+        ++       
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-IDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++      E R V+  +L        A  S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLTLMGETRDVELAML-PEPTADTAPVSDAQIKQWYD 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    ++  
Sbjct: 238 GHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297

Query: 279 NQKEADEAFQ-----------SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
              +A                + + G  F  LA+   +          LG   K  +   
Sbjct: 298 AGSDAAAQKAGEEKAAKLAAQAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++F++ K GD    I   FGY +  +  +K     SF++V+  +A +     A + 
Sbjct: 358 -FEDALFAM-KAGDVVGPIKTEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + +    T+++  +++  +    L             + + I     +L  
Sbjct: 416 FADLSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRT-------DASGIAANPAVLRS 468

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V       +T +   
Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQTLPLDKVREKVIAAVHADRTKKSAV 528

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           + A+ L+    K G+  + +       +     + R               +FS P    
Sbjct: 529 AAADALLARVQK-GETLQSLAAAEKLQVTPIPGLPRT---APVPTPAANRAIFSAPRPTE 584

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
               +      G  Y VF V+ S  G     P +++      L+Q+   +   + +  ++
Sbjct: 585 GKPSVGKVELTGGRYAVFVVSKSTPGDLKQMPAEQQTMLREQLSQIDGGNAAQAYVKEMR 644

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 645 KRYKIQIEEAQL 656


>gi|297538717|ref|YP_003674486.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
           301]
 gi|297258064|gb|ADI29909.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
           301]
          Length = 633

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 113/648 (17%), Positives = 249/648 (38%), Gaps = 46/648 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++ WV K  L ++ +PF ++G+   L S   +  V  VG   +   ++ N+ 
Sbjct: 1   MLDQIRTVAQGWVGKALLALITIPFALFGIDSYLSSAGNNVAVAKVGGNSISVQAYDNAL 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           K     +  +        +  S  +   +LD L++   L   I +        ++   + 
Sbjct: 61  KNMRNRLQSE--GKFEQAQLDSPEVKSLVLDQLINKQLLSDEIHNAKYAISDSQLATYVT 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  KD KFS +++   L++  ++  ++       L               SN   D
Sbjct: 119 GMPEFQ-KDGKFSQELYDQTLSQNQLSPSKFEAGMRADLLAQQAQDGIARLGFISNARAD 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  +   + R V    +  +            +  ++E++K+    PE  +I ++     
Sbjct: 178 EVLKLANQQRVVTVSEIKTKDFVDQVTVKPEEVKAYYEQHKNKLIVPEQVKIEFLSLAPV 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQ 288
              + + +S+DE++  Y+ N  K+   E R    ++               + +A+E   
Sbjct: 238 NFMRNVNVSDDEVKKYYDDNAAKFQGNEQRRASHILIAFGVSATPEQKQQAKAKAEEILA 297

Query: 289 SLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            +KK    F QLA    ++ G ++    LGSFS+  +      D+ FS+ K    + ++ 
Sbjct: 298 QIKKDPSKFEQLAVKNSQDPGSAVKGGDLGSFSRGAMVKP-FEDAAFSM-KVNQVSDLVE 355

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMD 402
             FGY I  V+ I       F  +K  I   +   KA ++  +  +   + +   + S++
Sbjct: 356 SEFGYHIIKVTEI-SGQNADFNSLKPQIKGDLMFQKAKDEFAKQAEAFSDLVYTQSGSLE 414

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPD 460
             ++           V  +    +          E+++  +F  +    + +T  + +  
Sbjct: 415 PAAKAFG------GQVQKSDWLSRESGAKFFKNNEKIMSLIFSNEVLKDRRNTEAIEVST 468

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
            + +  ++ +  PA  +  +EV   ++   K    ++   SK  +  L+  ++GKN    
Sbjct: 469 DNMVSARVVDYKPAAPKSFDEVKAGIEALLKLEAASKLAISK-GEAALKDLRDGKNVA-- 525

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-----ENGLSYVVFK 575
               G   +    ++R + +        ++QVF      +  +       +  L   V K
Sbjct: 526 ----GIEWIKEVTVDRKNAQG--LTDLAMNQVFKTNTAKLPAYSGLADSKQGYLLVKVIK 579

Query: 576 VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           V +S +   + K    + L   +  + + +    L+ +  VTV++ L+
Sbjct: 580 VDSSSLADEETKKAAKAQLNAALANEYIAAYKQSLREKAKVTVNEKLL 627


>gi|293605682|ref|ZP_06688060.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
 gi|292815920|gb|EFF75023.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
          Length = 684

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/661 (17%), Positives = 236/661 (35%), Gaps = 47/661 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IR   R W+  I L+++   F + G+      +     + +V  Q +  + F  + 
Sbjct: 31  MFEFIRSH-RRWMQLILLLLIVPSFFLVGIQGYDSFMRKEPELATVAGQPISRAEFDQAH 89

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L  + Q+ G   +   + +  L + +L+ L++   L     D         +   IA
Sbjct: 90  RNQLEQMRQRQGARFDPAVSDTPALREGLLNQLINQRLLANVAVDNRFNVSDETLRNTIA 149

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     + +FS + +   LA +G++   +     + L+   V+       R    ++ 
Sbjct: 150 AIPEVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVGRVLDPVGQSARAPAEVVA 208

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +    + R+V           +    S A +  W++  K   + PE  ++ Y++ D  
Sbjct: 209 SLESALTQQRTVQLRRFAAEDYRSQVTVSPADIQAWYDANKQQLQIPEQVQVQYLVLDEA 268

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------------DEAF 287
              + I++ +++L + YE+NK ++  PE R    ++      A             D A 
Sbjct: 269 AATQGIQVKDEDLASYYEQNKNRFGQPERRRASHIMIELAPGASEEARKAARAKAEDLAK 328

Query: 288 QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           Q+     KF +LA    ++ G +     LG  +   +    L  +IF  AK    + V+ 
Sbjct: 329 QAAADPSKFAELATKNSQDAGSASKGGDLGWLAPGMLSGP-LEKAIFGQAKD-QVSGVVE 386

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMD 402
              G  I  V+ I+P+      EVK  I +++R   A+    E   +L + +     S+ 
Sbjct: 387 SPAGLHIVKVTEIQPAAIKPLAEVKDQITSEVRKQLAAVHFSEMASQLNKQVYDQRDSLQ 446

Query: 403 EISRREKIVSIDLPLVDFAG------------KDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
             +    +       V   G             D    E+   P   Q LF      +  
Sbjct: 447 PAADAVGLKLRTASGVTREGLLPADKVGPGSAADSPDAELLDNPRVRQALFSGEVLREKQ 506

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
           +    + L     + V++    PA    LE+V   ++      ++AE         +   
Sbjct: 507 NSG-VIELSPAVMLAVRVANVEPAHVPVLEKVSDSIRARLLQERSAEAAKKAGEAALAAD 565

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGL 569
                                  I+R D ++       +      P   +  +   ++G 
Sbjct: 566 K-------ANPAAAPEGFSPAVVISRQDPKD--LPQPVVDAAMRLPASPLPGYTGVQSGA 616

Query: 570 SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            Y + ++   + G      KD+    L+  + +  +++++  L+ QY V V  +  +   
Sbjct: 617 DYTLVRLEKVEAGTVDASAKDRLAQQLSGGLGQAEIEALLKMLREQYKVQVLPSAAEVIR 676

Query: 628 D 628
            
Sbjct: 677 G 677


>gi|291614259|ref|YP_003524416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans
           lithotrophicus ES-1]
 gi|291584371|gb|ADE12029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans
           lithotrophicus ES-1]
          Length = 628

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/648 (16%), Positives = 251/648 (38%), Gaps = 47/648 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + +++  R  + +I L ++ +PF  WG++    + SG++ + +V  +K+    F ++ 
Sbjct: 1   MFDFVQEKRR--LVQIVLALIILPFAFWGVTSY-RNSSGTAPLATVNGEKIGQQEFDSAM 57

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            Q+   + +  G   +        +   +LD LV+   +    + +GL     +V   I 
Sbjct: 58  NQQQQRVREMAGANFDPAFFDKPEIKFSLLDRLVTQHLMAMEAKKVGLSITDEQVGQIIV 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F  +D +F    + + L  +G     +     + +    +   +         + +
Sbjct: 118 NIGAFQ-QDGRFDRQRYEAVLRDKGKTPSGFDAEIRQAVLLQQLTESYTQNGYAPESIAE 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      + R V    L+          S+  +++++ K    ++ PE  ++ Y++    
Sbjct: 177 KLIHLNEQQRVVAIADLDAAAFVKQVKLSDGAVSEYYNKNLQEFQLPERAQVQYVVLSSD 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--------- 291
               ++++ ++E++  YE+++  + + E R    ++    K+A +A +            
Sbjct: 237 SLLSQVKVRDEEVKQYYEEHQADFGTQEQRHAAHILITVPKQASDAEKQAARTKAEQILK 296

Query: 292 ----KGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                  KF  LA++  +          LG F +  +      DS+FSL K G  + ++ 
Sbjct: 297 LVKQSPAKFAALAKQYSQDPGSASNGGDLGEFGRGAMVKP-FEDSVFSL-KVGQVSDLVQ 354

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402
             FGY I  +  +KP+   +  EV+  I  Q+++ +A++   E  ++    +     S+ 
Sbjct: 355 TDFGYHIIKLIAVKPAKIQALAEVRDMIIQQLKLQRANDMFAELAEKFNNTVYEQSDSLK 414

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG- 461
             +   K+       V       KG+  A + + +++L  VF  D   +K +T AL  G 
Sbjct: 415 PAAELAKLS------VQQGVWLSKGQPPAGL-WTDKVLQAVFSDDAIKNKRNTAALEVGP 467

Query: 462 -SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
              +  ++ +  PA  R L EV   +++    ++ +E    +    + +     K     
Sbjct: 468 NKLLAARVTDYKPASVRPLTEVSAAIQQKLLQLQASELARQQGRDFLGKLQHGEKP---- 523

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV----VFKV 576
               G        I R    N     + +  +FS     +  +   +  S      + +V
Sbjct: 524 ----GVKWTAAQSITRNQRSN--IDPELLQAIFSADTSKLPAYVGVDSASGFKLARIDEV 577

Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            ++      +  ++   + Q+    L  + +   + + S+T+ +   +
Sbjct: 578 KDAATVDEGKIARYEQQIRQITGDALWRAYMEDARKRASITMKEFAAE 625


>gi|237807859|ref|YP_002892299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis
           DSM 9187]
 gi|237500120|gb|ACQ92713.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis
           DSM 9187]
          Length = 638

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/638 (18%), Positives = 252/638 (39%), Gaps = 34/638 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++ +R  ++  VAKI   ++ + F + G+   + S + +   V V  + +   +   S++
Sbjct: 3   MDKLRDGAQGRVAKIIFWLIILSFALAGVGSYINSPASNDPAV-VDDEVISAQTLEQSYQ 61

Query: 62  QELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            E   +  + G     +         L K +L+ LV+ + L+    + G+     +V   
Sbjct: 62  NERARMQAQYGEAAAQLLDNPQYLAQLKKSVLERLVNQSLLNNKALNAGVRLSDEQVKDV 121

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I + P F   DNKF +  F + L+R G   + + +   + L R   +   +         
Sbjct: 122 IRQMPEFQ-TDNKFDNQKFTTALSRVGYTPESFANSMRQDLIRQYWLDGILTTEFALPAE 180

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           + +    Y + R V  I +           ++  +  +++ + + +   E  +++YI+ +
Sbjct: 181 VSRLDALYQQKRDVKMITIPVETFSKQITVTDQDVDAFYKAHSNEFMQSEQVKLNYIVLN 240

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------QKEADEAFQSLKK 292
             +  K I+ ++ EL+A Y+++ E +  P  R V  ++  +      QK+ADE    LK 
Sbjct: 241 SADLAKTIQPADSELKAYYQQHAELFTEPARRKVSHILITDKDDNAAQKKADELLAKLKS 300

Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F QLA+ +            L  F K  + D +   + F+L +K + + V+  +FGY
Sbjct: 301 GTDFTQLAKTESADTLSARQGGELDWFEKG-VMDPAFETAAFALNQKNELSAVVKSAFGY 359

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRR 407
            I  + + + +    + +V   +  +    KA E   +  ++L +       S+D ++  
Sbjct: 360 HIIKLLDKQDAIETPYDKVVTIVRQKFVDEKAKELFADQQQKLSDIGFENPDSLDAVAEG 419

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
            K+    L   DF        E+     KEQ        ++  +    +++ D   + + 
Sbjct: 420 LKLP---LQKTDFIAAQQLPAEINVPAVKEQAFAEKLRDEN--TNSEVISVSDTVAVMLH 474

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + +  P+  + L EV   V    +  K AE+  ++A  L LE  K G++  +    L A 
Sbjct: 475 VIDYKPSSAKPLSEVKDLVVAKLRATKAAEKAHTEAMAL-LEKVKAGQSIDEQLTKLNAK 533

Query: 528 LLTTNQINRMDNENKFFGYDGISQVF--SGPVEMVKCFP--IENGLSYVVFKVTNSKVGP 583
           +     + R   +           VF  + P + V       +   +  V  +      P
Sbjct: 534 VEEKKGLARFGTD---IPAPLAQAVFKLAKPADKVVSAGLYADEEGNQSVLVLEKVISAP 590

Query: 584 VQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVT 617
                     L++ +     ++   ++I  L+ +  + 
Sbjct: 591 ETADAPLQQGLSEQLVKLKQEETYGALIEELRQKAKIK 628


>gi|121604540|ref|YP_981869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
 gi|120593509|gb|ABM36948.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
          Length = 645

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/641 (19%), Positives = 245/641 (38%), Gaps = 37/641 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + IRK ++ W   +  +++   F++ G++    S  G   V  V   ++    +    
Sbjct: 1   MFDFIRKHTK-WTMALLFLLIVPSFILVGMNSNPSSEKGG-VVAKVDGTEITQPEWDREH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +E+  +   +   ++++   S       L+ +V    +    E + L      +  E+ 
Sbjct: 59  LKEVDRLRASMP-TLDAKLLDSPEARYATLERMVRDRVVAVAAEKLKLSTSDQHLARELQ 117

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            SP        D     D +   L  +G++ + +  +    LSR  V+    G    SN 
Sbjct: 118 NSPEIAALRRADGSLDMDRYRQLLGTQGMSPEMFEANVRTDLSRRQVLAGVSGSGFASNS 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D A   YFE R +     N     A   P++A L Q+++  +  ++APE   I Y+L 
Sbjct: 178 AADMALNAYFEKREIQLARFNAADYAAKLTPTDADLEQYYKANEKLFQAPEQASIEYVLL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
           D+   +K I ++  +L+  YE+N  +    E R    ++               + +A+E
Sbjct: 238 DLEALKKGIAVNEADLKTYYEQNARQLSGTEERRASHILITASKTASPEEREKAKTKAEE 297

Query: 286 AFQSLKK-GKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
              ++KK  + F  +A    ++ G + +   L  F++  +   S  D+ FS+  KGD + 
Sbjct: 298 LLATVKKSPENFADVARKNSQDPGSATNGGDLDFFARGAMVK-SFEDAAFSM-NKGDISE 355

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FGY I  +++IK     +F+E++  +  +++  +A +K  E  +     +     
Sbjct: 356 VVASDFGYHIIKLTDIKAPKQRTFEEMRPQLEAELQKQQAQKKFSEAAEAFSNGVYEQSD 415

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           S+  ++ R K+       V           V       + L  +F  D    K +T A+ 
Sbjct: 416 SLKPVAERLKLEVKTAGNVGR----QPASGVTGALANPKFLTALFSPDSIEKKRNTEAIE 471

Query: 460 DGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
            G    V  +I +  PAR + L +V  +V++ W   ++AEE        + E+       
Sbjct: 472 VGPSQLVSGRIVQYTPARTQPLADVKDNVRQRWLAQRSAEEARKDGVAKLTEWKAAPSTA 531

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
             +   +  S     Q+     +       G   +FSG     + + I       V KV 
Sbjct: 532 TALTSPILVSREQAQQLPVQVVDAALRADTGALPIFSGIDLGAQGYAI-----VKVNKVV 586

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                      +  S   Q        +    LK ++   +
Sbjct: 587 PRDAPLEAAAKQERSQYGQWWTSAEALAYYNGLKDRFKAEI 627


>gi|187478461|ref|YP_786485.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N]
 gi|115423047|emb|CAJ49578.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N]
          Length = 648

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/652 (17%), Positives = 244/652 (37%), Gaps = 45/652 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IR   R W+  I LV++   F I G+      V+    + ++G Q +    F  + 
Sbjct: 1   MFEFIRTH-RRWMQFILLVLVVPSFAIVGVQGYSSFVNTEVELANIGGQGITQPQFDAAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L    Q++G   +     +  L +++L+ L+    L     D         +   IA
Sbjct: 60  RNQLEQFRQRMGSQFDPAVIDTPALREQLLNQLIDQRLLLMVAADNRFSVSDETLRNTIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     D +FS + +   LA +G++   + +   + L+   V+       R    +++
Sbjct: 120 AIPQVQD-DGRFSPERYRQVLAAQGLSPTSFENGLRRDLAVARVLEPIGLSARVPQEVVN 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             ++   + R++           +  + S   +  W++  K++ R PE  +  Y++ D  
Sbjct: 179 NVEQALTQKRTIQLRSFLAADYRSKVNVSPQDIQAWYDANKESLRIPEQVQAQYLVLDEA 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS----------- 289
              + +++ ++++ + YE+NK ++ +PE R    ++       +   ++           
Sbjct: 239 AATQGVQVKDEDIASYYEQNKNRFGTPEQRRASHILIEAPASGEARDKARAKAEAIAREA 298

Query: 290 LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
                 F +LA++  +          LG  +   +P  S+  +I  L K G  + V+   
Sbjct: 299 AANPASFAELAKKDSQDAGSAARGGDLGWIAANSVP-PSVQQAIDGLPKDG-VSGVVESP 356

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEI 404
           FG+ I  V++IKP+      EVK+ I N++R   AS +  E   +L+  +     S+   
Sbjct: 357 FGFHIIKVTDIKPAQIKPLAEVKEQITNEIRKQLASARFAEMATKLQSAVYDQRDSLQPA 416

Query: 405 SRREKIVSIDLPLVDFAGKDVKGK---------EVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           +    +       +  +G     +           AA+    ++   +F  D    K +T
Sbjct: 417 ADALGLKLRTAAGISRSGLLPADQAGAGSAAASPDAALLDNPRVRQALFANDVLREKQNT 476

Query: 456 --VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
             + L   + + +++    P+    L++V   ++      ++A+       + +      
Sbjct: 477 GVIELAPDTLLALRVAVLEPSHIPPLDKVKDSIRARLLDERSAQAARQAGEEALK----- 531

Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGLSYV 572
                   ++          ++R D+ N       +  V       +  +    +G  YV
Sbjct: 532 ----ASQAQDSDQGFSAPQTVSRQDSGN--LPRSLLEAVMRLDAAKLPAYTGVASGSDYV 585

Query: 573 VFKVTNSKVGPV--QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
           V ++   + G    Q      S L     +    +V+  L+  Y V V    
Sbjct: 586 VLRLDKVEAGQADPQAAATLASQLGSAWGEAEDQAVLKMLREAYKVQVLPAA 637


>gi|192360723|ref|YP_001982468.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio
           japonicus Ueda107]
 gi|190686888|gb|ACE84566.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio
           japonicus Ueda107]
          Length = 621

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/631 (17%), Positives = 228/631 (36%), Gaps = 27/631 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+  ++ I +  L V F ++G+         ++ VV V  +K+      N+ 
Sbjct: 1   MLQSIRDNSKGVISYILIGFLVVIFALFGVESLFNWNPTANKVVEVNGEKITQVELQNAI 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            ++   +  + G  V SE      L K +LDNL+    L Q  +  G+   +  +  +I+
Sbjct: 61  ARQKQQMMNRYGDQVPSEFLSEDYLRKPVLDNLIQNQVLYQAAKKAGMTVGNDLITEQIS 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P+F  +   F +  +   L+  G     Y     K L    +          +   ++
Sbjct: 121 SAPVFKNEAGVFDNTRYRQALSMMGYTHATYTQQLAKDLVLNQLYTGLASSSFTTPNEIE 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q     ++ R   Y VL +  +      S+  +  ++ K    Y + E   + YI   V 
Sbjct: 181 QLIALSYQTRDFSYFVLPSSKIKESVVVSDEEIADYYAKNPQAYTSEEQVAVDYIELSVD 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ--KEADEAFQSLKKGKKFIQ 298
                I IS ++L  +YE+    + +   R    ++  NQ  ++     + L  G+ F +
Sbjct: 241 ALMADISISEEQLHKQYEQGLASFVAAPERHAAHILVENQDAEKIKAVREKLAAGEDFAE 300

Query: 299 LAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           LA+     L     G    F+K          ++  L K G+ +  +    G     +  
Sbjct: 301 LAKTYSDDLGSKEQGGDLGFTKGDTFPAEFETALAGL-KVGEVSAPVETDAGTHFIKLLA 359

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
            + S   SF+E K  +   ++  +A        ++L+E      S+ E+++       + 
Sbjct: 360 ERGSQAPSFEEQKASLEEHLKRAEAENIFVAKLEQLKELAFNADSLAEVAKEIDAKVSNT 419

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIP 473
            L               I   + +    F +D     +    + L     + ++  +  P
Sbjct: 420 GLFSRTSG-------QGIAANKLVADAAFSEDVLQDGNSSEPIELDTTRAVVIKKTDYQP 472

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
           +R   L+EV   +       K  E + +K +QL+ +    GK   ++    G +L T   
Sbjct: 473 SRLLPLDEVKQQIVGVLTESKARELMRTKGSQLLADL-HAGKALDELASAEGQALKTAAA 531

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS----YVVFKVTNSKVG----PVQ 585
             R  ++      +     F       +   +   ++    Y + ++    +G      +
Sbjct: 532 AKRYGSD---VEPEIAGFAFDMAKPTAEVASVAGFVTASGDYALIQLAAVNLGAEEIAEE 588

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           +K   ++ +  M       S   YLK    +
Sbjct: 589 QKKAIVAQVGNMNGLADFSSFQGYLKEVADI 619


>gi|134094954|ref|YP_001100029.1| putative peptidyl-prolyl cis-trans isomerase protein [Herminiimonas
           arsenicoxydans]
 gi|133738857|emb|CAL61904.1| putative peptidyl-prolyl cis-trans isomerase D, ppiD-like
           [Herminiimonas arsenicoxydans]
          Length = 636

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 107/641 (16%), Positives = 234/641 (36%), Gaps = 39/641 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IR   R  +  + L+++   F   GL         S+TV  V  Q +    +  + 
Sbjct: 1   MFEFIRTH-RRLMQFLLLLIILPSFAFVGLESYTSMGDASNTVAKVADQTITQPEWDAAQ 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++    Q  G   +++   +    ++IL+NL++   L    +   L      +   I 
Sbjct: 60  REQMSRFRQMFGDQFDAKMFDTPEAKQEILNNLIAQRVLTAEAKRNKLAVTDQALQQTIV 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
                   D KF  + + + LA +G+    Y     + L+   V           + L  
Sbjct: 120 NMGGLTTADGKFDVERYKAILAAQGMTPTMYEARLRQELTSQQVNAAIQNTAFAPDSLAK 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      + R V  +             ++ +L  ++EK  + +  PE  +  Y++    
Sbjct: 180 RLSELGEQEREVQQLAFKTSDYAGQVKVTDDMLKSYYEK-SNQFNVPEQVKAEYVVLTAD 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL---------- 290
               +I +S+ ++++ YE+N + Y   E R    ++    K+A +A ++           
Sbjct: 239 ALAAQINVSDADIKSYYEQNAKHYGVEEQRRASHILIGVNKDASDAEKAAAKAKAEQLLA 298

Query: 291 ---KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
              K  ++F +LA+E             LG F K  +      ++ F L K+G+ + ++ 
Sbjct: 299 TLHKNPQEFAKLAKENSSDTGSAERGGDLGFFGKGMMVKP-FEEAAFKL-KQGELSDLVQ 356

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402
             +G+ I  ++ IKP+   +  EVK +IA+ +R    ++K  E        +     S+ 
Sbjct: 357 SDYGFHIIKLTAIKPASIKTLDEVKNEIASDIRKQLVAKKYTETADVFSNTVYEQADSLK 416

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHT--VALP 459
            ++ + K+    +       +          PY  Q  L  +F  +   +K +T  V + 
Sbjct: 417 AVADKLKL---KIETTGDLSRQPNPAVAPTAPYNNQKFLTALFSDESLKNKRNTEAVEVA 473

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
             + +  ++ E  PA  R  +EV   V +     + A          +            
Sbjct: 474 PNTLIAGRVTEYKPAAKRPFDEVKAMVHERVVQEEAAALAKKAGEAKLAALQ-------- 525

Query: 520 IGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYV-VFKVT 577
             K+  +    T  ++R  ++      +  + +  +  +       +  G   + + +VT
Sbjct: 526 -AKDDASGFSATQIVSRAKSQGLNPAVFLAVMKADTSKLPAYVGVDLPQGFGVLRIVRVT 584

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                   ++      +T  + +    + I  LK +  V +
Sbjct: 585 QPANVDSAKRQAEHQQITAALAQQETFAYIEALKQKAKVKI 625


>gi|315634906|ref|ZP_07890188.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC
           33393]
 gi|315476458|gb|EFU67208.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC
           33393]
          Length = 615

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/632 (17%), Positives = 244/632 (38%), Gaps = 29/632 (4%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E +  AS  W +K     + V F+I  ++  L++    ++   V  +++       +++
Sbjct: 3   MEKLHGASTNWASKFLFGFITVTFVISSMAGYLYTRV-DNSAAKVNGEEIS----QQAFQ 57

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            +  + S+ +        A+   L +++L +L+    L Q+  ++ L     R+  EI  
Sbjct: 58  NQYNIASRNLTPQEIDSPAQVANLKRQVLASLIDQELLRQYANELKLGVSDARIKQEIVT 117

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
           +P F   + KF + ++   L   GI+ + Y  +  + L    +               ++
Sbjct: 118 TPTFQN-NGKFDNTLYQQTLQNNGISAETYAGYVREALRLEQLQSGLGTTTFSVPAQQEK 176

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
             + +F++R +    L+  +  A  + S+  +  +++ +K  +  PE  ++ Y+      
Sbjct: 177 LTKLFFQSRQIRLANLSLANEIAKQEVSDEEIQAYYDAHKAEFTIPETVKVQYLDLSGAA 236

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
            E  I I++ E+   Y+ NK ++ +   + +  +    +++A E +Q L+ G  F  LA+
Sbjct: 237 MENNINITDVEIAQYYQDNKPQFTTQGQQRLAHIQVKTEQQAQELYQQLQNGANFADLAK 296

Query: 302 EQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                 +       L   S    P V   D+  +LA  G ++  ++    Y I  V   K
Sbjct: 297 NHSIDPTSAERGGDLSWVSAGEFPKV-FEDAANALA-VGQYSQPVNLDNHYHIILVEERK 354

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
                  + VK  IA Q+R    + +     KR+ E      S    +       + +  
Sbjct: 355 EPQLQPLESVKAQIAAQIRQNLVNTQFYSIEKRVAEKAFEDPSSLNAAAEVG--GVKVQE 412

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPAR 475
             +  +D    ++ A      ++  VF  D     S    + + +   + V++ +  P  
Sbjct: 413 TAYFSRD----DIPAELNYPNVVSAVFDSDLSQGGSNSEPMNVGEQHSVVVRVLDHKPQS 468

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
            + L+E   D+    K  K    V ++A Q+V   S EGK+        G          
Sbjct: 469 IKTLDEAKADITAHLKHQKAEAVVLAQAEQIVQNLS-EGKSVE------GVKFSAEQTWV 521

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISY 593
             +N++        S       +             V+  +     G    QE+ +F   
Sbjct: 522 FAENKDPVLNNTVFSMAKPEEGKTTYKAASNANGDVVIIALDKVVDGKLTEQEQKQFAVQ 581

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           + Q+    L +S++  L+++  + ++D+ I +
Sbjct: 582 IEQLSQVSLQNSLLNALRAKAKIKINDSFINQ 613


>gi|114765314|ref|ZP_01444431.1| hypothetical protein 1100011001355_R2601_24744 [Pelagibaca
           bermudensis HTCC2601]
 gi|114542294|gb|EAU45323.1| hypothetical protein R2601_24744 [Roseovarius sp. HTCC2601]
          Length = 615

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/636 (19%), Positives = 260/636 (40%), Gaps = 38/636 (5%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           + +        I   +L   F+ +G    +    G   + SVG   +  S +  + + EL
Sbjct: 1   MARGKAGITKYIVWAILIASFVGFGAFGTVNFSGGVGNIGSVGDTTISTSDYARALQSEL 60

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
                + G  +  E+AR  GL  ++L  +V+ A L+     IGL     RV  +++    
Sbjct: 61  RAQQAQTGRAITVEQARQSGLTDQVLAQVVTNAALEDETTRIGLSVGDERVAEDLSNVEA 120

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F+G D  F    +   L   G+NE E+ ++  +  +R+ +    + G    +  +D    
Sbjct: 121 FNGPDGNFDRSAYAYALQNAGLNEGEFEENLRRDAARSILSAAVISGTTLPDAYVDTLLE 180

Query: 185 FYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
           +  E+R+  +  L    +   +  PS   L  W++   D +  PE K I++         
Sbjct: 181 YIGESRAFTWATLERDALNTGLPVPSEDELQAWYDDNIDLFTLPETKVITFAWLTPDMIV 240

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEE 302
             +E+  D L+A Y++  E++  PE R +E+LVF  + EA  A   +      F  + +E
Sbjct: 241 DTVEVEEDALRAAYDERAEEFNLPERRLIERLVFSTEAEAQAAADRIASVEADFETVVDE 300

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +G +L D  +G  +++ + D   A+ +FS A+ GD       SFG  +  V+ + P+   
Sbjct: 301 RGLALIDTDMGDVTRDTLGDA--AEPVFS-AEVGDVVGPAPSSFGPALYRVNGVLPAQET 357

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
            ++E   D+ + + + +A   ++     +++ LA G +++E+++      ++L  +D+  
Sbjct: 358 PYEEAVPDLRDALVLDRARRVIEGMASSIDDELAGGATLEELAQD---TDMELGQIDWTA 414

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
               G  +A      +    V   D P        L DG    +++ E         E+V
Sbjct: 415 STDTG--IAGYQSFREAASAVAEGDYP----AIAELGDGGIFALRLDELRAPAPAPFEDV 468

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKE---GKNFRDIGKNLGASLLTTNQINRMDN 539
              V++ W+  +  + + ++A ++    S++   G+N  D     G +  +  Q      
Sbjct: 469 RDRVEQLWEQEQATDALLTQAEEIATRISEDQSFGENGLDASAESGLTRESRIQ------ 522

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM- 598
                    +  VF       +    +         V    V PV  +D  I  L   + 
Sbjct: 523 ---GLPAAVLEAVFDMAAGEARAVRGDG----AALIVRLDDVTPVNMEDPQIQQLGNALR 575

Query: 599 -------NKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
                  ++DL  ++ A ++S+  +++  + +   L
Sbjct: 576 DQAAGSVSQDLFRALNADIQSRAGISIDQSAVNSVL 611


>gi|317403066|gb|EFV83601.1| peptidyl-prolyl cis-trans isomerase D [Achromobacter xylosoxidans
           C54]
          Length = 656

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 107/663 (16%), Positives = 240/663 (36%), Gaps = 47/663 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IR   R W+  I L+++   F + G+      +     + +V  Q +  + F  + 
Sbjct: 1   MFEFIRSH-RRWMQFILLLLIVPSFFLVGIQGYESFMRKEPELATVAGQPISRAEFDQAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L    Q++G   +     +  L + +L+ L++   L     D         +   IA
Sbjct: 60  RNQLEQYRQRLGAQFDPAVIDTPQLREALLNQLINQRLLANVAVDNRFSVSDETLRNTIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     + +FS + +   LA +G++   +     + L+   V+       R    ++ 
Sbjct: 120 AIPEVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLEPVGQSARAPAEVVA 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +    + R+V           +    + A +  W++  K   + PE  ++ Y++ +  
Sbjct: 179 SLETALTQQRTVQLRRFAAADFRSQVTVTPADIQAWYDANKQQLQVPEQVQVQYLVLNEA 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AF 287
              + +++ +++L + YE+NK ++  PE R    ++      A E             A 
Sbjct: 239 AATEGVQVKDEDLTSYYEQNKNRFGQPERRRASHIMIEVPAGASEDARKAARAKAEALAT 298

Query: 288 QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           Q+     +F +LA    ++ G + +   LG  +   +    L  +IFS +K    + V+ 
Sbjct: 299 QAAANPAQFAELARKNSQDAGSAANGGDLGWLAPGMLSGP-LEKAIFSQSKD-QVSGVVE 356

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMD 402
              G+ +  V+ I+P+      EVK  I  ++R   A+ +  E   +L + +     S+ 
Sbjct: 357 SPSGFHVVKVTEIQPAAIKPLAEVKDQITAEVRKQLAAVRFSEMASQLNKQVYDQRDSLQ 416

Query: 403 EISRREKIVSIDLPLVDFAGK------------DVKGKEVAAIPYKEQLLFRVFGKDDPL 450
             +    +       V   G             D     +   P   Q+LF      +  
Sbjct: 417 PAADAVGLKLRTASGVTREGLLPADQAGPGSAVDSPDAALLDNPRVRQVLFSPDVLREKQ 476

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
           +    + L   + + V++    PA    L++V   ++      ++AE         +   
Sbjct: 477 NSG-VIELSPDTMLAVRVAAVQPAHVPPLDKVSDSIRAKLLDERSAEAAKKAGEAALAAD 535

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGL 569
                  +               ++R D +N       +  V   P   +  +   ++G 
Sbjct: 536 -------QANPAAAPEGFGGPLVVSRQDPKN--LPRSVLDAVMRLPAAKLPAYTGVQSGA 586

Query: 570 SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            Y + ++   + G     +K++    L     +   ++++  L+ +Y V V     +   
Sbjct: 587 DYTLVRLEKVEAGTVEAADKERLAQQLAGAWGQAENEALVRMLREEYKVQVLPAAAEAIR 646

Query: 628 DGE 630
            G+
Sbjct: 647 GGD 649


>gi|146279132|ref|YP_001169291.1| hypothetical protein Rsph17025_3102 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557373|gb|ABP71986.1| hypothetical protein Rsph17025_3102 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 655

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/617 (20%), Positives = 258/617 (41%), Gaps = 27/617 (4%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
            V    + ++ V    +G+++      G STV SVG + +  + +  + +QE+  +  +I
Sbjct: 53  IVFWGLVALMAVGLGGFGVTNF---GGGLSTVGSVGDRDITTADYARALQQEMRALGAQI 109

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              V  E AR+ GLD+++   LV+ A L    + +GL     RV  EI  S  FHG   +
Sbjct: 110 NQPVTMEMARAFGLDQQVRRRLVTQAALSNEADRVGLSVGDARVAEEITGSDSFHGPSGQ 169

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F  + +   L +  ++E E+ +   + +SR+ + G   GG      L+D    +  E RS
Sbjct: 170 FDRETYRLVLRQNNLSESEFENGLREDISRSLLQGAVGGGFVAPAALVDTLHAYIAERRS 229

Query: 192 VDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
              + +   ++ A   +P+   L  W+E +  ++ APE KRI+Y      E    + +  
Sbjct: 230 FSLLRVQEANLGAPLPEPTEDELQAWYEAHPADFTAPERKRITYAALLPQEVAPTLPVDE 289

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
           + L+  Y++   ++  PE R VE+L F   + A EA   + +G  F  L  E+G  L DI
Sbjct: 290 EALRRLYDQRLGEFVQPERRLVERLAFSTPEAAAEARARIDEGTPFETLVSERGLELIDI 349

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            +G  +++ +   + A+++F+L + G     +    G  +  V+ +  +    F+ V+ D
Sbjct: 350 DMGDVTRDELG--AAAEAVFALTEPG-IAGPVETGLGPALFRVNGVIAAQETPFEAVRDD 406

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           +  + +   A+  +     ++++ LA G +++E+     +    +        D     +
Sbjct: 407 LLAEYQQDAAARAISGRRDQIDDLLAAGATLEELGTEAGMKIATVDYAPGLDSD-----I 461

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
           A           +   D P     TV L DG  + +++ E +P + +  EEV  +V +  
Sbjct: 462 AGYEAFRTAADALQPDDFP----ETVQLNDGGLLAMRLDEVVPPQLKPFEEVRDEVAEAV 517

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
           +     + ++++    +   ++EG +    G      +     + R D   +      ++
Sbjct: 518 RADALDKALAAR-AAEIATAAEEGTDLGSFG-----PVEDLGPMTR-DGFVENVPETLVT 570

Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI----SYLTQMMNKDLLDSV 606
             F      ++          +         G  +          + + Q +++D L   
Sbjct: 571 TAFGMEEGALRAIDGPGFAGVLRLDTVEPAAGDDEAARALKASLSAQIEQALSQDALALF 630

Query: 607 IAYLKSQYSVTVHDNLI 623
              L  +  +T++D  I
Sbjct: 631 SNSLMQEAGITLNDAAI 647


>gi|254465313|ref|ZP_05078724.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales
           bacterium Y4I]
 gi|206686221|gb|EDZ46703.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales
           bacterium Y4I]
          Length = 613

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 134/633 (21%), Positives = 265/633 (41%), Gaps = 32/633 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   ++K S+T+V  I + +L V    +G   A+   S SS+V  VG ++V   S++   
Sbjct: 1   MAAGMKKLSKTFV-WILMGMLIVGLAGFG---AVNFTSSSSSVAQVGDEEVSIGSYVREL 56

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++E   +  + G  V   +  + G+D+ +L  L+S A LD     +GL      +  E++
Sbjct: 57  QREQRALQAQTGQAVTMAQMSAFGMDRMVLGRLISLAALDHESRQLGLSIGDDNLIEELS 116

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F      F  + +   L   G+ EKE+ D   +  +RT V    + G +    L +
Sbjct: 117 AIDAFKNVSGGFDREAYRFALRNAGLTEKEFEDDLRREAARTMVQNAMLSGTKMPATLTE 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
               F    RS  Y+ LN   +   A+ PS+A L  ++E  +D +  PE K I+Y     
Sbjct: 177 TLTSFIGARRSFSYVQLNAADIALTAEAPSDADLQAFYEANQDQFMLPETKVITYAALRP 236

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQ 298
                +IE+   +LQ  +E   ++Y  PE R VE+LVF ++  A  A   L+  G  F  
Sbjct: 237 STLLDEIEVDEAQLQRLFEDRADQYQVPERRLVERLVFGSEDAAASAKAQLETGGATFES 296

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           L E +G +L D  +G  +   +        +F+  + GD    +    G  +  V+    
Sbjct: 297 LVEARGLTLQDTDMGDVAMGDLGAAGTE--VFA-TQVGDVAGPLPSDLGPALYRVNGRLE 353

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
           +   +F++ K ++  ++   +A   V+   + +++ LA G +++E++       ++L  +
Sbjct: 354 AQITTFEDAKPELIEELASDRARRLVESQAEGIDDMLAGGATLEELATE---SGLELAQI 410

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
           ++      G  +AA          V  +D P        L DGS   +++ + +P R   
Sbjct: 411 NWTEDTSDG--IAAYEAFRTAAAAVTAEDFP----EAGFLEDGSLFALRLDDVLPERPEP 464

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
             +    V   W+  + A+ +  +   ++ +  + G      G   GA + T   + R  
Sbjct: 465 FADAKDKVLAAWQADRLAKALKDQGEAVLAQAEQAG------GFAEGADVKTEPGLTRTA 518

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-----DKFISY 593
             +       +SQVF+      +   +++  S VV ++         +          + 
Sbjct: 519 YIDTV-PEPLVSQVFTMETGDFRL--VQDADSAVVVRLDAILPPEQSDDMTLLAQALQAQ 575

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
           L Q + ++L ++ +  ++++    V    +   
Sbjct: 576 LDQSLAEELFEAYVQDVQARAEPRVDQQALNAA 608


>gi|84686955|ref|ZP_01014838.1| hypothetical protein 1099457000244_RB2654_01575 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664929|gb|EAQ11410.1| hypothetical protein RB2654_01575 [Rhodobacterales bacterium
           HTCC2654]
          Length = 613

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/632 (19%), Positives = 257/632 (40%), Gaps = 34/632 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   I      +   I + ++ V  + +G   ++       ++  VG  ++  S++    
Sbjct: 1   MFSNI----SRFFVWIIMALVMVGLIGFG---SVNFGGSGQSIGKVGDTEIDASAYFREL 53

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E     Q+ G  +    A+ +GLD+++L  +V+   ++   + +GL      +   + 
Sbjct: 54  NAEFQGWQQQTGQNLTMAEAQEIGLDQRVLSRVVAITAVENETDRLGLSVGDQNLASRVT 113

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F G + +F  D +   L + G+  +E+ +     ++RT + G     +   ++  D
Sbjct: 114 EIPAFQGPNGQFDRDTYDFVLEQSGLTAREFEETLRLEVARTILAGAVTSDLEMPDVYTD 173

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
               +  E R   +  +    +     +P+ A L  ++E   D++  PE ++I+Y     
Sbjct: 174 TLFGWARETRDFTWAPVTRSALEEPLPEPTEADLEAYYEANPDDFTTPETRQITYGWLKP 233

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298
            +   +I + + +LQA Y++  +++  PE R VE+LVF +  EA  A   ++ G+  F Q
Sbjct: 234 EDVLDEIPMDDTQLQALYDQRIDEFQVPERRLVERLVFGSADEAQAAADRIEAGETTFDQ 293

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
             + +G SLSD+ +G  ++  +      + IF+L   G     I    G  +  ++ I  
Sbjct: 294 EVQARGLSLSDVDMGDVTRRALGQA--GEPIFALDAPGVV-GPIETDLGPALFRMNAILS 350

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
           +   SF+EV+  +  +     A   V+     ++E +A G +++E++       I +  +
Sbjct: 351 AQETSFEEVRDQLFEEYAADAARRLVRTRATEIDEMMAGGATLEELAAE---GLITVDTI 407

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
            +   +  G  +AA     +        D P        L DGS   +++ E  P   + 
Sbjct: 408 GYFDGNQDG--IAAYAPFREAASEASESDFP----EVTELEDGSVFALRLDEITPPALQP 461

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
           L+EV   V   W+     E + ++A  L+ ++    ++  +    +G + +    I R  
Sbjct: 462 LDEVRDAVVAGWEAQTLTEALVARAEALIPQF----ESGAEAPSTVGLTEVLEEDIARTS 517

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFIS 592
                     I   F       +    +     VV  +T+              K  F +
Sbjct: 518 FIQGT-PSTMIETAFEMEEGTWQVVSGDG--QVVVLGLTDVNAPDQDSAEAQEIKTTFGA 574

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            ++Q +  D+ D+  A L++   VT+   +I 
Sbjct: 575 RVSQQIAADVQDAFAAALEADAGVTLDQAMIN 606


>gi|325518979|gb|EGC98507.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           TJI49]
          Length = 644

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/659 (16%), Positives = 242/659 (36%), Gaps = 45/659 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V +V   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDQARQALGGQFDIKAFDTPDHRKQVLDGLIQQRVLADETQRLHLTASDNAVREALL 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D     + +   L+ +G+  ++Y +     L+   +    V        
Sbjct: 120 SDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L         + R V  +VL      A   P++A L  +++ +K ++  PE   I Y+++
Sbjct: 180 LAQHLSELAAQQREVQALVLKTSDYAAKVQPTDAQLAAYYDAHKQSFATPETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + ++ +++  Y+ N   + +     V  +                + +A++
Sbjct: 240 SPAAAAASAQPTDADVKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +K     F Q+A++  +          LG  ++       +  D+ F+L K+G+ +
Sbjct: 300 LLADVKAHPDQFAQIAQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGEVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+    G+ I   + +KPS    F EVK +IA  ++   AS+   ++ +     +    
Sbjct: 359 GVVQSDLGFHILKATEVKPSAVKPFAEVKDEIAASLKQQYASKAFSDNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            S+   + + K+      +       +        P   + L  VF  D   ++++T  +
Sbjct: 419 KSLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNP---KFLAAVFANDSVKNQNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ E  PA    L+ +   V++     + AE         + E  K  K+
Sbjct: 476 DVGNNTLISARVTEHKPATVPALDAIKDAVRQKVVAEQAAELAKKDGAAKLAELQKS-KS 534

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                     S   +  +              +S V+    + +  +   +     Y ++
Sbjct: 535 TEGFAAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584

Query: 575 KVTNSKVGPVQEKDKFI---SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           +V     G   +  +       + Q+  +   ++ +A L+ +  V ++ +   +  DGE
Sbjct: 585 RVNAVVPGSAVDPQQLAGAQQQMAQVEAQSEGEAYLAALRDRSKVKLYGSTASQSKDGE 643


>gi|149913756|ref|ZP_01902288.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp.
           AzwK-3b]
 gi|149812040|gb|EDM71871.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp.
           AzwK-3b]
          Length = 613

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/630 (18%), Positives = 246/630 (39%), Gaps = 31/630 (4%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           K        I + +L +    +G ++   +     TV  VG  ++  + +  + + E+  
Sbjct: 4   KGISRTFVWILMGLLIIGLAGFGATNLGGAFG---TVARVGTAEIRTNDYARALQNEIRA 60

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
              + G  ++ ++AR +G+  ++L  LV+ A+ D     +G+      +  +I   P F 
Sbjct: 61  REAERGGAISFQQAREMGIPDQVLAQLVTTASFDHEATRLGVSIGDDNLRQQILGIPAFQ 120

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
           G D  F  + +   L R G+ E E+ D   +  +R  V    + G+   +   +    + 
Sbjct: 121 GIDGNFDREAYAFTLDRIGLTEAEFEDDMREETARALVQSAVMAGVTVPDAYFETLLTYL 180

Query: 187 FENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
            E R V + VL    +   +  P+   L  + +    ++  PE KR++Y           
Sbjct: 181 GEERDVTWAVLERADLDTGLPTPTEEDLRSYHQGNLPSFTTPETKRLTYAWLTPEMIIDT 240

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQG 304
           +E+    L+  YE+  +++  PE R VE+L F +   A+ A   +  G   F  L  ++G
Sbjct: 241 VEVEEQSLRDAYEERIDEFNQPERRLVERLAFADTGTAETAIAGINDGSTDFETLVAQRG 300

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
             L D+ LG  ++E +   + A+ +F+ A+ GD    +    G  +  ++ I  +   +F
Sbjct: 301 LDLVDVDLGDVAREDLG--TAAEVVFA-AQAGDVVGPVETDLGPALFRINAILSAQETAF 357

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
           +E +  + + +   +A   +     R+ + LA G ++++++       ++   +D+    
Sbjct: 358 EEAEPLLRDTLAADRARRVIDSRIDRIADLLAGGATIEDLAAE---TDMEQGQIDWHPGV 414

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
            +G  + A     Q    +   D P        L DG    +++   +    + L+EV  
Sbjct: 415 TEG--IGAYDAFRQAAQAITEDDFP----DVEQLGDGGIFAMRLDRVVDPEIQPLDEVRD 468

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
            V   W+   T   ++ KA  LV +  + G++F D    LG   L    + R   +    
Sbjct: 469 AVLAGWRQQATVAALTEKAEPLVADL-RNGRDFAD----LGLDTLDAQNLTRQGFQPDT- 522

Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMM 598
             + I  VF      +    IE      + ++   +            +          M
Sbjct: 523 PTEFIETVFDMEQGGIAL--IEGTTRVFILRLDAVRPPSSDNEELARLRTALRDQSASSM 580

Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
            +D    +   ++++  + +    I     
Sbjct: 581 AQDFYQLLATDIRTRAEIEIDQQAINAVHG 610


>gi|119945205|ref|YP_942885.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
 gi|119863809|gb|ABM03286.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
          Length = 631

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 112/639 (17%), Positives = 255/639 (39%), Gaps = 34/639 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ ++   AKI +VV+ + F + G+S  L   SG S  V+V  +++  ++   ++
Sbjct: 1   MLDKMREGAQGATAKIIIVVIILSFALAGVSSYL-GGSGISVAVTVNDEEISKATVDQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   + Q+ G       S    +  + ++ +  ++S   L Q I+D+GL     +V  
Sbjct: 60  QNERTRLEQQYGEQFALLASTPNFNQKIRQQAMQTVISERLLTQAIKDMGLRIGDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI +   F   D  F+++ ++S L R      ++     + L+R  ++ M +G      +
Sbjct: 120 EIRKMKEFQ-VDGNFNNEQYLSLLRRASYTPAQFSQSIKQDLARRQLLTMVLGSEFILPM 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            + QA R   + R    + +           S   ++ ++E     ++  E   + Y++ 
Sbjct: 179 EVQQANRLQAQKRVARVLTVKASDFADKDPISEQEISTYYENNSQFFQTAEQVSVDYVVL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKK 292
           D      ++ +S++EL+  Y+ +   Y   E R V  ++        +++A      L++
Sbjct: 239 DGSLLADRVTLSSEELEKYYDMHASDYQRGEKRKVAHILLLGDNSAAKEKAQAILSELEE 298

Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F QLA ++ +      ++  L  F +  + D +  D+ F L K+   + ++   FGY
Sbjct: 299 GADFAQLAAQKSEDSYSAENNGELDWFERG-VMDPAFDDAAFKLTKEAPLSNIVKSQFGY 357

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRR 407
            I  + +I+ S  +   EV   + N  +  + +    E ++RL E       ++DE +R 
Sbjct: 358 HIIKLVDIQESKKLPLSEVTAQVENAAKREEMNNLYYELHQRLSEAAFERPDNLDEAAR- 416

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
             ++  D+   +        + +      + +    F +D        + L +   + V 
Sbjct: 417 --VLGTDIQHTELFSAAEAPEPLTDNAVLKIVFDSAFRED--RMNSELIELSENKVIVVH 472

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           +     A  + L +V   +    +  K  +        L+++  K  ++   I      +
Sbjct: 473 VNRYQAAALQPLADVSEQIIAQLQAQKAHKNTEEFVKSLMVKL-KAQESIETILTEKNLA 531

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTNSKVGP 583
               +   R D+E     Y  +  VF       +    +    +   Y + ++T+ +   
Sbjct: 532 FSDPSTFTRNDSE---LDYRVMQAVFKLAKPTEQQATYDWVTTSTDDYALIELTSVEELD 588

Query: 584 VQEK-----DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + K      K    L ++ ++    ++   L +   + 
Sbjct: 589 SELKNVDKIQKLEERLQRLFSESTYQALSMALMANADIK 627


>gi|260433616|ref|ZP_05787587.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417444|gb|EEX10703.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 613

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 135/595 (22%), Positives = 258/595 (43%), Gaps = 27/595 (4%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
                TV  VG + +   ++    ++E+  +  + G  +   +AR +GLD++ L  LV+ 
Sbjct: 33  SGTVRTVAQVGDEVITVDAYARELQREIRAVEAQTGQPLQMSQARDLGLDQRALSRLVAL 92

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
           A LD  +  +G+      +  EI R   F G D  F  + +  +L + G+ E E+ +   
Sbjct: 93  AALDNEVAQLGISVGDENLQKEILRIQAFQGADGSFDREAYRFQLEQIGMTEAEFEEDLR 152

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQ 215
           K  +RT V G  + G+    +L D    +    RS     L+   + A   +P++A +  
Sbjct: 153 KETARTIVQGAIMNGIEMPAVLTDTLADYVQARRSFTVATLSADALDAPVPEPTDADIQA 212

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++E   D +  P  K+I+Y +      +  +E+  D L+  Y++ KE+Y  PE R VE+L
Sbjct: 213 FYEANTDRFTLPRTKKITYAVLSPAMLQDTVEVDEDALRRLYDQRKEQYQQPERRLVERL 272

Query: 276 VFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           V+P++ EA EA   L+  G  F QL   +   LSD+ LG  +++ + +   AD++F+ A+
Sbjct: 273 VYPSEAEATEAKAQLEVGGVDFEQLVRARELELSDVDLGDVTRDDLGEA--ADAVFA-AE 329

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            GD    +  +FG  +  V+       V+F E + ++  ++   +A   ++   +   + 
Sbjct: 330 VGDVVGPLPSAFGPALFRVNGTLAEHNVTFDEAEPELREELAAERARRVIESQAEEYNDM 389

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           LA G +++E++   ++    +       +D     +AA          V   D P     
Sbjct: 390 LAGGATLEELAAETEMELGQIDWTAQTDED-----IAAYDAFRSAAQAVGEGDFP----E 440

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
              L DGS   +++ E +P R   LE     V + WK  +  + +  KAN +V   + EG
Sbjct: 441 IGFLEDGSVFALRLDEELPPRPEPLESARDRVIEAWKQEEIGKALLEKANTVVTSLAVEG 500

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
                     G      N + R    +   G D ++QVF      ++  P +      + 
Sbjct: 501 DF-----AATGLPFRVENALTRTAFLDDVPG-DFMTQVFEMEPGELRVIPGQGAA--FIV 552

Query: 575 KVTNSKVGPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           ++             Q KD   + L Q + +++ D+ +   +++   T+    + 
Sbjct: 553 RLDEVLPPAETDEQRQMKDAVAAQLNQALAQNIFDAYVRDAQTRARPTLDQRALN 607


>gi|21230443|ref|NP_636360.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21112006|gb|AAM40284.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 656

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 110/672 (16%), Positives = 233/672 (34%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L +PFL   + ++     G++ V  V              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +  +  S     ++LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   IA  P F   D KFS D + + LA+        ++       
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-IDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++      E R V+  +L        A  S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLTLMGETRDVELAML-PEPTADTAPVSDAQIKQWYD 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    ++  
Sbjct: 238 GHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297

Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
              +A     + +K           G  F  LA+   +          L    K  +   
Sbjct: 298 AGSDAAAQKAAEEKAAKLAAEAKQPGADFAALAKANSQDPGSKDAGGDLSWVEKGTMVKP 357

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++F++ K GD    I   FGY +  +  +K     SF++V+  +A +     A + 
Sbjct: 358 -FEDALFAM-KAGDVVGPIKTEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + +    T+++  +++  +    L             + + I     +L  
Sbjct: 416 FADLSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRT-------DASGIAANPAVLRS 468

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V       +T +   
Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQTLPLDKVREKVIAAVHADRTKKSAV 528

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           + A+ L+    K G+  + +       +     + R               +FS P    
Sbjct: 529 AAADALLARVQK-GETLQSLAAAEKLQVTPIPGLPRT---APVPTPAANRAIFSAPRPTE 584

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
               +      G  Y VF V+ S  G     P +++      L+Q+   +   + +  ++
Sbjct: 585 GKPSVGKVELTGGRYAVFVVSKSTPGDLKQMPAEQQTMLREQLSQIDGGNAAQAYVKEMR 644

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 645 KRYKIQIEEAQL 656


>gi|329908176|ref|ZP_08274836.1| Peptidyl-prolyl cis-trans isomerase ppiD [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546752|gb|EGF31691.1| Peptidyl-prolyl cis-trans isomerase ppiD [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 642

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/638 (16%), Positives = 235/638 (36%), Gaps = 31/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E +R   R  +  + L+++   F + GL          + +  VG Q +    +  + 
Sbjct: 1   MFEFVRTHKR-LMQFLLLLIIVPSFALVGLGSYKSFGDAENVIAKVGGQPITQVEYDAAQ 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++    Q  G   + +   +    + ILDNL++   L        L      +   I 
Sbjct: 60  REQMARFKQMFGAQFDPKMFDTPEARQGILDNLIAQRALSVEAARQHLSVADAALQQSIT 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
                 G D KF  + + S LA +G+    Y     + ++   +             +  
Sbjct: 120 GIAGLVGPDGKFDGERYRSLLAMQGMTPAMYEQRLRQDMAVQQLNSAIQSTAFAPKTVAT 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      + R+V  ++       A  + +  +L  +++K    +  PE   I Y++    
Sbjct: 180 RLSDINDQERTVQELLFKPADYAAKVNVTADMLKAYYDKNARQFEVPEQATIQYVVLSSD 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAFQ 288
               +I +++ E+   YE+NK+ +   E R    ++   +K            +A++   
Sbjct: 240 ALASQIAVTDQEVADFYEQNKKSFGVDEQRRASHILINLKKGASATEKAAAKAKAEQVLA 299

Query: 289 SLKKG-KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            ++K    F ++A+    +QG +     L  F K  +      +++F L K  + + ++ 
Sbjct: 300 QVRKAPGDFAKIAKASSEDQGSAPEGGDLDFFGKGAMT-PPFEEAVFKL-KLNEISGLVE 357

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402
             FG+ I  V+ IKP+   +  +VK  I   ++  KA+++  E  +     +     S+ 
Sbjct: 358 SDFGFHIIEVTAIKPASFRTLDQVKPQIVADIKRQKAAKQYSEAAESFGNTVYEQADSLK 417

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPD 460
            ++ + K+    +  +      +      A+    + L  VF  D   +K +T  + +  
Sbjct: 418 PVADKLKLKIETVSGLTRTPNPLAAP--TALFNNAKFLNAVFADDTLKNKHNTEAIEVAP 475

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
            + M  +I +  P   R   EV   V++     ++A  ++ KA +  L   K   +    
Sbjct: 476 STLMAGRIVDYKPVGKRPFAEVEAVVREKVIAEESA-VLAKKAGEAKLAALKTADDASGF 534

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
           G     S    + +N        F     + +   P         +    Y + KV  ++
Sbjct: 535 GVAKVVSRSKNDGMN-----GPGFDSVMKADISKLPAIAGADLSRQGYAVYRISKVAQAE 589

Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                 + +    +   + +  + + +  LK +  V +
Sbjct: 590 KIDAPRRLEEQQQIANALAQQEMIAYLNVLKEKAKVKI 627


>gi|163856532|ref|YP_001630830.1| peptidyl-prolyl cis-trans isomerase D [Bordetella petrii DSM 12804]
 gi|163260260|emb|CAP42562.1| peptidyl-prolyl cis-trans isomerase D [Bordetella petrii]
          Length = 653

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/664 (16%), Positives = 235/664 (35%), Gaps = 47/664 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E++R   R W+  I L+++   F + G+      +     + +V  Q +  S F  + 
Sbjct: 1   MFELLRNH-RRWMQFILLILIVPSFFLVGIQGYESFIRREPELATVAGQPITRSEFDMAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L    Q++G   +     +  + +++L+ L+    L Q   D       G +   IA
Sbjct: 60  RNQLEQFRQRLGSQFDPALVDTPAMREQLLNQLIDQRLLAQVAIDNRFSVSDGTLRNTIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     + +FS + +   LA +G+    +     + L+   V+          + ++ 
Sbjct: 120 AIPQVQD-NGRFSPERYRQVLAAQGMTPTSFEAGLRRDLAVGRVLEPINQSAGAPDAVVA 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +    + R+V           A    S   +  W++  K     PE     Y++ D  
Sbjct: 179 SLESALTQQRTVQLRRFAAADYRAQVSVSPEDIQTWYDGNKQQLTVPEQVTAQYLVLDEA 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AF 287
              + +++  +++ + YE+NK ++  PE R    ++      A E             A 
Sbjct: 239 AATQGVQVKEEDIASYYEQNKNRFGQPERRRASHIMIELPAGASEDARKAAHAKAEALAK 298

Query: 288 QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           Q+     +F +LA    ++ G +     LG  +   +    L  S+F LAK    + V+ 
Sbjct: 299 QAAADPAQFAELARANSQDAGSAGKGGDLGWLAPGMLAGP-LEKSVFGLAKD-QVSGVVE 356

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMD 402
              G  I  V+ I+P+      EV+ +I  ++R   A+ +  E   +L E +     S+ 
Sbjct: 357 SPSGLHIVKVTEIQPAAIKPLAEVRDEITAEIRKQIAATRFSEMATKLTEIVYDQRDSLQ 416

Query: 403 EISRREKIVSIDLPLVDFAGKDV------------KGKEVAAIPYKEQLLFRVFGKDDPL 450
             +    +       +   G                  ++   P   Q LF      D  
Sbjct: 417 PAADALGLKLRTASGITREGLLPADQAGADAAASGPDAQLLDNPRVRQALFSPDVLRDKQ 476

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
           +    + L   + + V++ +  P     L++V  ++++     + AE         +  +
Sbjct: 477 NSG-VIELSPDTMLAVRVAQVQPEHVPPLDKVSANIRERLLDERAAEAARKAGTAALDGW 535

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGL 569
             +     +           +  ++R   +      D ++     P E +  +    +G 
Sbjct: 536 KADPATLPE-------GFGASAVVSRQ--QPGQLSQDVLNAAMRLPAEPLPAYAGVNDGN 586

Query: 570 SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            YVV ++   + G      +D     L     +    +V+  L+ QY V +         
Sbjct: 587 DYVVVRLDKVEAGASEASARDLLARQLGAAWGQAEDAAVLKVLREQYQVKILPEAASALQ 646

Query: 628 DGEK 631
             ++
Sbjct: 647 GQDQ 650


>gi|254486655|ref|ZP_05099860.1| putative peptidyl-prolyl cis-trans isomerse [Roseobacter sp.
           GAI101]
 gi|214043524|gb|EEB84162.1| putative peptidyl-prolyl cis-trans isomerse [Roseobacter sp.
           GAI101]
          Length = 614

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/618 (20%), Positives = 269/618 (43%), Gaps = 30/618 (4%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
             I + +L +    +G   A+      S++ +VG + +    +    +Q++  I  + G 
Sbjct: 13  VWILMGMLILGLGGFG---AVNFNGNVSSIGTVGDKDISVDQYARELQQQIRAIEGQTGE 69

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            ++ ++A+++GLD+ +L  LV    LD    ++G+      +   I   P F G D  F 
Sbjct: 70  TLSFQQAQAIGLDRAVLQRLVRLRALDNETAEMGISIGDENLRERIIDIPSFQGIDGNFD 129

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            + +   L + G++E E+     +  +R+ + G   GG+   ++       F  E RS  
Sbjct: 130 REGYRFALQQAGLSEAEFETSLREEAARSLLQGAISGGVTMPDVYAQTLVNFVGEKRSFT 189

Query: 194 YIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
           +  L    +    A P++A L  +++   +N+  P  K I+YI+    +   ++EI+ DE
Sbjct: 190 WAALTEDDLQTPLAAPTDADLQAFYDANPENFMLPASKSITYIILTPQDVLDEVEITQDE 249

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDIS 311
           L+  Y+     +  PE R VE+LVFPN++ A+ A  +L+  G  F  L +++G +L DI 
Sbjct: 250 LRKAYDDRAADFIQPERRLVERLVFPNEEAANMAAAALEVSGTTFDALVQDRGLTLEDID 309

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           +G  S+  +   +  +++F+ A+ GD    +  + G  +  V+ I PS   +F+E    +
Sbjct: 310 MGDVSRLELG--AAGEAVFA-AEAGDVVGPLPSNLGPALFRVNGILPSLNTTFEEASPAL 366

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
              +   +A+  V+   + L++ LA G ++++++   K   + L   ++     +G  +A
Sbjct: 367 QQDLAGDRAARLVEVRAQELDDQLAGGATLEQLAEETK---MTLGTTEWTADSDQG--IA 421

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
           A          +   D P        L DGS   +++  + P R    E+    V   W 
Sbjct: 422 AYESFRAAAAALTDGDFPK----IDQLEDGSVFALRLDGTKPERPNPFEDARASVAAAWT 477

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
             +  + ++++A +      + G +F D    LG +      + R    +       +++
Sbjct: 478 ADQLLQALTAQA-ETAQSALEGGSDFAD----LGLTPTDQQNLTREAVISGA-PDGLMTE 531

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-----DKFISYLTQMMNKDLLDSV 606
           VF      ++     +  S  + +V +       E+     D+  + L Q +++D+    
Sbjct: 532 VFDAAPGDIRTIAGTD--SVAILRVDSITAAEESEQTRQLLDQLTTQLNQQLSQDVFALY 589

Query: 607 IAYLKSQYSVTVHDNLIQ 624
            + +  + +  +    I 
Sbjct: 590 SSDVVRRTAPMIDQQAIN 607


>gi|309781952|ref|ZP_07676683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia sp.
           5_7_47FAA]
 gi|308919296|gb|EFP64962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia sp.
           5_7_47FAA]
          Length = 635

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 92/640 (14%), Positives = 232/640 (36%), Gaps = 43/640 (6%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           +  + L+++F  F+ +G+      +  S     V  + +  +      +++   + Q +G
Sbjct: 1   MFLVLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARVREQTERLRQMLG 60

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL---FHGKD 129
              +  +     + + +LD ++    L   +    L   + ++   I + P        D
Sbjct: 61  AQYDPRQFEGPQMRRDVLDGIIQQRVLANEVTRANLTISNEKIRDTILQIPAVAALRKPD 120

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
             F  + +V  L+ + +  ++   +    LS+  +    V        L+D+  +   + 
Sbjct: 121 GSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKSLVDRLIQVRDQQ 180

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           R V  ++       A  +  +  +  +++ ++  +  PE  +  Y++F   E  K+I ++
Sbjct: 181 REVQALLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVFSGEEMMKQIPVT 240

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAFQSLKKG-KKF 296
            ++L+  Y++N  ++ + E R    ++                 +A+E    ++K    F
Sbjct: 241 PEQLKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEEVLAEVRKNPASF 300

Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LA++             LG   K         +++F+L + GD + V+   FG+ I  
Sbjct: 301 ADLAKKYSGDPGSAAQGGELGFLGKGATV-PPFENALFALKQPGDISDVVQSDFGFHIIK 359

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIV 411
           +  +K       + VK ++  ++R   A++K  E        +     S+  ++ + K+ 
Sbjct: 360 LEEVKGGGVQPLEAVKPELERELRTQLANKKYSELADAFSNTVEDQSDSLKPVADKLKLQ 419

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG--SYMWVQIK 469
                 V       +          +++L  +F  D   +  +T A+  G  + +  +  
Sbjct: 420 IQTADNVTRTPSPAQSGSPIG---NDKVLKALFADDVIKNHRNTAAIQVGPTTLVAARAA 476

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           E  PA  +KL +V   VK      + A  ++ KA +  L   K+  +    G        
Sbjct: 477 EYRPATVKKLADVREQVKAKVIAEQAA-ALAKKAGEEKLAAVKQSNSADGFGA------- 528

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVG---PV 584
               ++R   +        ++ +       +      +     Y ++++           
Sbjct: 529 -VQTVSRQQAQGT--PPAALTAILRADATKLPTTIGVDLGAQGYALYRINKVLPPANVDE 585

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
             +      L Q   +   ++    LK++  V ++ + + 
Sbjct: 586 TRRAADAQQLAQAAGQTEFNAYYEALKARSKVKINSSAVD 625


>gi|325274293|ref|ZP_08140404.1| periplasmic folding chaperone [Pseudomonas sp. TJI-51]
 gi|324100576|gb|EGB98311.1| periplasmic folding chaperone [Pseudomonas sp. TJI-51]
          Length = 623

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 112/637 (17%), Positives = 240/637 (37%), Gaps = 36/637 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V   + G      + + S     V  Q +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKSIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L ++ L  L+S   L Q  ED         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDEKLLREEALKGLISRKLLLQGAEDAKFAFSDAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KFS D F   + + G    ++ D   + +    +     G    ++  +D
Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQFRDMLAEEMLIGQLRTGLAGSSFVTDQQVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  L  +  PA    S+A +   ++++   + +P+   I YI     
Sbjct: 180 AFARLEKQTR--DFASLTFKADPAAVKVSDAEVKAHYDQHAKEFMSPDQVVIDYIELKKS 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               +++++++EL+A+YEK        E R    ++            +  A+E  Q L 
Sbjct: 238 AYFDQVKVTDEELKAQYEKEIANL--AEQRHAAHILIEVNDKVSDAQAKARAEEIEQRLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  +       G    F+   + D +  ++++ L + G  +  +   FGY
Sbjct: 296 KGENFATLAKEFSQDPGSAGNGGDLGFAGPGVYDPAFEEALYKL-QDGQVSAPVRTQFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     SF  +K  +   ++     ++  +  K+L++     + + + ++  
Sbjct: 355 HLIKLLGVQAPEVPSFASLKDKLTRDLKTPLVEQRYVDASKQLQDAAYEASDLAQPAQDL 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
            +           G    G+ + A     Q  F     D+  +    + L   + + +++
Sbjct: 415 NLKVHTSAPFGREG----GEGITANRSVVQAAFSEEVLDEGAN-STAIELDPETTVVLRV 469

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
           KE        LE V  ++++     K   E+ +KA++L+        +      + G   
Sbjct: 470 KEHRKPEQLPLEAVAQNIRQHLAKEKATAELKAKADKLIAGLRDG--SIAAGSVHEGQGW 527

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL-----SYVVFK---VTNSK 580
            T   + R +   +    + +  +F       K  P+   +     S VV +   V    
Sbjct: 528 KTHEAVTRGE---EGIDPEELQALFRLAKPQAKDKPVYGSVVLRDGSLVVLQLKGVNEGT 584

Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               +EK +   YL     +    +    L++   +T
Sbjct: 585 TATDEEKQQIRRYLASRAGQQDFAAYRKQLEANADIT 621


>gi|86138848|ref|ZP_01057420.1| hypothetical protein MED193_03732 [Roseobacter sp. MED193]
 gi|85824495|gb|EAQ44698.1| hypothetical protein MED193_03732 [Roseobacter sp. MED193]
          Length = 614

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/634 (20%), Positives = 260/634 (41%), Gaps = 32/634 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   I+K S T+V  I + +L V    +G  +   S+S    V  VG ++V    ++   
Sbjct: 1   MATGIKKLSNTFV-WILMGLLIVGLAGFGAVNFSSSMS---AVALVGEEEVTVDEYLREM 56

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++E   +  + G  ++  +  + GLD+ +L  L+S A +D  ++++G+      +  E+A
Sbjct: 57  QREQRALQAQGGQALSLSQMAAFGLDQAVLGRLISIAAIDNEVKNLGISVGDDNLRQELA 116

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F      F    +   L    +NE ++     +  +RT V G  V G +  + L  
Sbjct: 117 EIPAFQDPSGNFDRQTYSFALQNANLNESDFEADLRRESARTLVQGAIVVGAKMPDTLTK 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
               +    RS  Y+  +   +      P +AVL  ++E   D++  PE KRI+Y     
Sbjct: 177 TLTSYIGARRSFSYVPFSPDQISLIQVVPEDAVLMAFYEANADDFTLPETKRITYARLSP 236

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQ 298
                 +E+  + L+  Y    E+Y   E R VE+LVF +   A +A   L   G  F  
Sbjct: 237 DMILDTVEVDEEALRTLYSDRSEQYQIAERRLVERLVFADDTSAADAKAQLDVAGTTFEA 296

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           L E +G +L DI LG  ++ ++ D + A      A+ G     +    G  +  V+    
Sbjct: 297 LVEGRGLALQDIDLGDVTQSFLGDAAEAVFA---AEVGTIVGPLPSDLGPALYRVNGQLE 353

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
           +   +F++ + ++ +++   +A   +++  + + + LA G ++++++        D+ + 
Sbjct: 354 ARHTTFEQAEPELRDELAADRARRLIEQQAEEINDLLAGGATLEDLANES-----DMEVA 408

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
                   G+ + A          V  +D P +      L DGS   +++ E +P R   
Sbjct: 409 SLGWSGETGEGITAYEGFRTAASLVTVEDFPTA----EFLGDGSLFALRLDEILPERPEA 464

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
            E+    V   W+  + A  + ++A  L+   ++ G          G+ +     + R  
Sbjct: 465 FEDAKAKVLAAWEADRVATALQAEAEALLATVTQTGDFPE------GSQVQQETGLTRTA 518

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFISY 593
             +     D ++Q+FS     +K    E G   VV ++         E          + 
Sbjct: 519 YLDNT-PADMMNQIFSMEPGDLKVIKGEAGT--VVVRLDAVLAAEENEEMQLLAKALSTQ 575

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           L Q +++ L  + I+  + + +  V    +   L
Sbjct: 576 LDQAVSEALFTAFISDAQLRAAPRVDQQALNAVL 609


>gi|325982743|ref|YP_004295145.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
 gi|325532262|gb|ADZ26983.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
          Length = 627

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/641 (15%), Positives = 246/641 (38%), Gaps = 36/641 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M +++ +  R  V ++ L +  +PF+ WG+     +      V  V  +++    +  + 
Sbjct: 1   MFDLVNRKKR--VVQVILGLAVLPFMFWGVESY-RNDGSEGYVAVVEGEEISRREYEQAL 57

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +     +   +G   +S    +  +   +L+ L+    L Q     G      ++   I 
Sbjct: 58  RDHHERMRAMLGANFDSAMLDTSEVRSSVLERLIQQRLLYQEAVKNGFVVLDSQLIKTIQ 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F  K+NKFS   +   L  +G+    +       L    ++  +           +
Sbjct: 118 DVQAFQ-KNNKFSKQQYEELLRNQGLTPVIFESRVRNELLLQQLLDGYSENAITPRTTTE 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           + +      R +    +      + A P  A ++ ++E++K ++  PE  ++ Y++  + 
Sbjct: 177 RVQYLSEVRREISQSKITPDQFLSQAIPEEADISAYYEQHKTDFDLPERAKVEYLVLSLE 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQ 288
           +  K   +S++ +   + +++ ++   E R    ++               +++A    +
Sbjct: 237 KVAKNEFVSDEAINTYFLEHQSEFGQSEERKASHILISVSPDAPEEEKQMAREKAKRILE 296

Query: 289 SLKKGKK-FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            +K+    F ++A+E             LG F++  +   S  D IFS+ +  + + ++ 
Sbjct: 297 QVKQNPDQFAEIAKEHSDDPGSAMRGGDLGFFARGVMVK-SFEDEIFSM-QLDEISDIVE 354

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402
             FG  I  ++ IK       +EV++ I N +++        E  +     +   G S+ 
Sbjct: 355 TDFGLHIIKLTAIKEERHPDLEEVREQIENTLKVEMVESVFGEIVEDFSNVVYEQGESLQ 414

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPD 460
             + + +++      +    K+       AI   E LL  +F  +   +  +T  + +  
Sbjct: 415 AAAEKFELIIEKSDWITKDSKEP------AILANENLLSAIFSDEVISNNRNTEAIEVNP 468

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
            +++  +I E  PA  + L  V  ++ +  K         ++  + ++   + G+   D+
Sbjct: 469 DTFVSARIIEYKPATSQSLAVVKDEIVEKLKKEMAVSMAVAEGQEKLVRL-QAGEVLDDV 527

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
             +  A L++  Q   +D+E         ++V   PV +    P        + KV    
Sbjct: 528 AWD-DAQLISYMQPQGLDHE--VLRAIFRAEVDELPVYVGAVKPEGGFNLIRISKVIEPD 584

Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
                  + F   L QM+ ++ + S +A ++ +Y V +  N
Sbjct: 585 SDEKTPPENFAKQLQQMITQEEISSYLAAIRQRYDVKIIQN 625


>gi|188992771|ref|YP_001904781.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167734531|emb|CAP52741.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris]
          Length = 656

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 110/672 (16%), Positives = 231/672 (34%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L +PFL   + ++     G++ V  V              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +  +  S     ++LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   IA  P F   D KFS D + + LA+        ++       
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-IDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++      E R V+  +L        A  S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLTLMGETRDVELAML-PEPTADTAPVSDAQIKQWYD 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    ++  
Sbjct: 238 GHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297

Query: 279 NQKEADEAFQ-----------SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
              +A                + + G  F  LA+   +          LG   K  +   
Sbjct: 298 AGSDAAAQKAGEEKAAKLAAQAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++F++ K GD    I   FGY +  +  +K     SF++V+  +A +     A + 
Sbjct: 358 -FEDALFAM-KAGDVVGPIKTEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + +    T+++  +++  +    L             + + I     +L  
Sbjct: 416 FADLSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRT-------DASGIAANPAVLRS 468

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V       +T +   
Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVREKVIAAVHADRTKKSAV 528

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           + A+ L+    K G+  + +       +     + R               +FS P    
Sbjct: 529 AAADALLARVQK-GETLQSLAVAEKLQVTPIPGLPRT---APVPTPAANRAIFSAPRPNE 584

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
                      G  Y VF V  S  G     P +++      L+Q+   +   + +  ++
Sbjct: 585 GKPSAGKVELTGGRYAVFVVGKSTPGDLKQMPAEQQTMLREQLSQIDGGNAAQAYVKEMR 644

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 645 KRYKIQIEEAQL 656


>gi|160898321|ref|YP_001563903.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
 gi|160363905|gb|ABX35518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
          Length = 631

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/646 (18%), Positives = 243/646 (37%), Gaps = 48/646 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IRK S+ +V  +  +++   F+  G++   F+ S S  V  V   ++  + + N+ 
Sbjct: 1   MFESIRKHSK-FVMILLFLLIIPSFIFVGVNQNYFTES-SVIVARVDGHEIKQADWENAH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E   +  +    ++ +   S       L+ +V    L   ++ + L A   ++   + 
Sbjct: 59  RMESDRLRAE-NPNIDPKLLDSPQARYATLEKMVRDQVLAAAVQKMHLAASDAQLVRTLQ 117

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     + + + +  +G+  + +  +  + LS   V+G   G    ++ 
Sbjct: 118 EIPAIAALKKPDGSMDAEAYRALVGSQGLTPEGFEANLRRELSMNQVMGGVTGTAFATDT 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            + QA    ++ R V           +   P+ A L  +++ +   ++  E  ++ Y+L 
Sbjct: 178 QVKQAIDALYQRREVQVARFEASAYASKVQPTEADLKAYYDAHTSQFQQSEQAKVEYLLL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-- 295
           DV   E  I +S D++++ Y +N E+   PE R    ++    K+A  A Q   K K   
Sbjct: 238 DVPSIEAGITLSEDDVRSYYNQNAERLAGPEERRASHILINASKDAPAAEQEKAKAKAEE 297

Query: 296 -----------FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                      F +LA+    + G + S   LG F +  +      D+ F + K GD + 
Sbjct: 298 LLAELRKDPKRFAELAKANSQDGGSAASGGDLGYFGRGAMVKP-FEDAAFGM-KVGDISD 355

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+H  FGY I  + +IK     SF++++  +  +++  +A  K  E  +     +     
Sbjct: 356 VVHSDFGYHIISLVDIKKPKAPSFEQMRPKLEAELKQQQAQRKFAELAEGFSNAVYEQSD 415

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+  ++ + K+       V        G  V       + L  +F  D   +K +T  V 
Sbjct: 416 SLQPVAEKFKLTVQKADHVTR----QPGPNVKGPLANPRFLEALFSSDSLNNKRNTDAVE 471

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           L     +  ++ E  PAR   + EV   ++  +   K+AE   +     +  +       
Sbjct: 472 LGSNQLVAGRVVEYTPARTLPMAEVGDKLRTLYVAQKSAELAKADGEAKLAAWK------ 525

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
               K   A L     I+R   E +    + +      P   +  +   +     Y V K
Sbjct: 526 ---AKPDAAQLPAAKVISRDQPEGQ--PREVVDSALRAPTAQLPAWTGVDMGAQGYAVVK 580

Query: 576 VTNSKVGPVQEKDKFISYLTQMMNKDLLD---SVIAYLKSQYSVTV 618
           +      P  +     +     +    +    +    LK Q  V +
Sbjct: 581 INRIVERPADDAQAAAAQKQDFLRSSAVAEAMAYYELLKKQLKVQI 626


>gi|258405892|ref|YP_003198634.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfohalobium
           retbaense DSM 5692]
 gi|257798119|gb|ACV69056.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfohalobium
           retbaense DSM 5692]
          Length = 626

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/645 (15%), Positives = 249/645 (38%), Gaps = 41/645 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK +++W  K    ++ + F+ WG+ +       ++ V  V  + +    F  ++
Sbjct: 1   MLDAMRKNAQSWAIKFLFALIILVFVFWGVGN--LGNDQATVVAEVQGEAILIRDFQQAY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ +  + +K    ++ E    + L +++L++L++   L +  + +GL      V   + 
Sbjct: 59  QRTVENLRRKQPD-ISREDFEQMQLKRQVLNDLITSQLLFREAKKLGLAVTAPEVRQYVQ 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P+F   D +F    +   L    +   ++    T+ L    +          S     
Sbjct: 118 QMPVFQNADKQFDPSRYEQLLRANQLTPAQFEADLTRSLLTNKIQRAVKLPASVSEAQAK 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               F  E   ++Y +   +  P +A P+   +  ++++ +  ++ P    + Y+L    
Sbjct: 178 DLFAFSQEKARMEYALFAWQDQPGLA-PNEEAVKHYYQENQKQFQRPARMEMDYLLLTPE 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288
                  +S++E++A YE N  ++   E      ++               +++A    +
Sbjct: 237 GLAAAQPVSDEEIKAYYEANPGEFERQEELKARHILIEVPEGADDQQVTEAREQAQALVE 296

Query: 289 SLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            L+ G    +LA E      S     LG F++  + +   A +       G+ +  +  S
Sbjct: 297 RLRDGADLAELAREYSDGPSSAQGGDLGWFARGEMVEAFEAAA--FALDTGEISDPVRTS 354

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           FG+ +  V + KPS T  F+EV+ +I  ++   KA++K+ +      + +  G S+ + +
Sbjct: 355 FGFHVITVEDRKPSGTQPFEEVQDEIRQEIGADKAAQKMSDLLDEALDLILSGKSLKDTA 414

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
              +I       +  +G   + +    I   ++    +F        D  + L D  Y+ 
Sbjct: 415 ATLEI------PLRHSGPFTQAQGPEGIELDKEQRETLFTLTPGEVTDTPLLL-DNGYLI 467

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
            +  +  PA+ R+L+ V   ++   K  +  E+  + A  ++       ++         
Sbjct: 468 AKQTDFSPAQPRELKAVRDQIETTLKREQGLEKAKAAAENVLARLEAPDQDLE------- 520

Query: 526 ASLLTTNQI-NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP- 583
               T+     R            +  VF+         P +    YV+ ++        
Sbjct: 521 RETSTSEPFGRRGFIPGLGMNPQLVESVFNAEQGQWLEKPYKVQQGYVLARLAERVAPDM 580

Query: 584 ---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV-HDNLIQ 624
               +++  ++  L Q   + L  + +  L+ +  V + +  +++
Sbjct: 581 SKWEEQQSLWVGQLQQSRKQALFQAYLTQLREKAEVKIVNPGVLE 625


>gi|261868689|ref|YP_003256611.1| peptidyl-prolyl cis-trans isomerase D [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414021|gb|ACX83392.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 615

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/636 (18%), Positives = 247/636 (38%), Gaps = 37/636 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E +  AS  W +K     + V F+I  ++  L+S   SS    V  +++       +++
Sbjct: 3   MEKLHGASNNWASKFLFGFITVTFVISSMAGYLYSRIDSS-AAKVNGEEIS----QQAFQ 57

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            +  + SQ +             L +++L +L+    L Q+++D+ L     R+  EI  
Sbjct: 58  NQYNIASQNLSPQEADSPTVVANLKRQVLSSLIDQELLRQYVKDLKLGVSDERIKQEIVT 117

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
           +P F   + KF + ++   L   GI+ + Y  +  + L    +            +  + 
Sbjct: 118 TPSFQN-NGKFDNVLYQQLLQSNGISAETYAGYVREALHLEQLQSGLGITAFTVPVQQEA 176

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
             + +F+ R V    L+     A    S   +  +++ +K ++  PE  ++ Y+      
Sbjct: 177 LTKLFFQRRDVRLATLSLADEIAKQTVSAEEIQAYYDAHKADFTLPESVKVQYLDLSGAN 236

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
            EK I ISN E+   Y+ NK ++ +   + +  +    +++A + +Q L+ G  F  LA+
Sbjct: 237 MEKNINISNVEIAQYYQDNKSQFMTQGQQRLAHIEVKTEQQAQDLYQQLQNGADFATLAK 296

Query: 302 EQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                         L   S    P V   D+  +L   G F+  +     Y I  V   K
Sbjct: 297 NHSIDPISAEKGGDLSWVSAGEFPKV-FEDAANAL-DVGKFSQPVKLDNSYHIILVEERK 354

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
            S  +  + V+  I  Q+R    + +     KR+ E     +S    +       + +  
Sbjct: 355 DSAVLPLERVRPQIVAQIRQNLVNNQFFSVEKRVAEKAFEDSSSLNAAAEAG--GVKVQE 412

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPAR 475
             +  +    K++ A      ++  +F  D     S    +++ D   + +++ E     
Sbjct: 413 TGYFSR----KDIPAALNYPNVVSAIFDSDISQGGSNSEPMSIGDQHSVVIRVLEHKAES 468

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
            + L+E   D+    K  K    V ++AN+LV E +  GK    +          T  + 
Sbjct: 469 VKSLDEAKNDITARLKRQKAEAVVLAEANKLVQELT-AGKTVDSL------KFGATQSLV 521

Query: 536 RMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVGP--VQEKDK 589
             +N +        + VF+ P       V     E     VV  +     G    QE+ +
Sbjct: 522 FAENNDPML----YNAVFAMPKPTEGKAVYQATKETKGDIVVIALDKVVDGALSEQEQQQ 577

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           F   L +     L ++++  L+++  + ++D+++ +
Sbjct: 578 FAVQLARADQIALQNNLLNALRAKAKIEINDSVVNQ 613


>gi|46579478|ref|YP_010286.1| peptidyl-prolyl cis-trans isomerse domain-containing protein
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602972|ref|YP_967372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris DP4]
 gi|46448892|gb|AAS95545.1| peptidyl-prolyl cis-trans isomerse domain protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563201|gb|ABM28945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris DP4]
 gi|311233293|gb|ADP86147.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris RCH1]
          Length = 629

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/644 (18%), Positives = 238/644 (36%), Gaps = 38/644 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML++IR  +++W  K+   ++ V F+ WG+         +S V +V ++ +    FI  +
Sbjct: 1   MLDVIRGHAQSWGVKVAFGLIIVVFVFWGVGS--MQEGPTSVVATVNKKPIVIRDFIREY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +  +    V ++  + +GL +++L  +V+   + Q  E +G+      +   I 
Sbjct: 59  ERQVESLRTRFPG-VTADELKKLGLKRQVLQQMVAETLMQQEAERLGITVTPYELRAAID 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F     KF  + +   L  +      + +   K +    +  +   G   ++    
Sbjct: 118 QIPAFRDASGKFDPETYKKVLKAQQTVPGRFEEGVRKDMLGRKMRALVTAGAVVTDAEAR 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E RS+DY++       A A   +A L  W++  K  +  P+  R+ ++     
Sbjct: 178 DMFTYAQEKRSIDYVLFPLDEYAAAASIEDAALQAWYDSNKARFTEPQKVRLDFVRISAE 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADE------------AF 287
                I+I    + A Y +N   YF  PE      ++    + ADE            A 
Sbjct: 238 SLAAGIDIPETAIAAFYAENAASYFMQPERVRARHILVRVPEGADEATVRKAEERIADAA 297

Query: 288 QSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             +K GK F  +A    E G + +   LG F +  +      D+ F L K G+ +  +  
Sbjct: 298 AQIKAGKDFAAVAAKVSEDGSARNGGELGWFGRGEMVKP-FEDAAFGL-KPGEVSAPVRS 355

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +      +     +  EV+ +I  ++   KA EKV +      E ++ G S+DEI
Sbjct: 356 QFGFHLIKSEGHEAQRQKALDEVRNEIRKRLAEEKAIEKVHDSLDNALELVSAGKSVDEI 415

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           + + K+       +            A +  K   +   F        D  +   +G Y+
Sbjct: 416 AAQLKLERQTSEPLTRESAS------ATLGLKPADVTLAFSAPAGTVIDTPLE-AEGGYI 468

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
             ++ E  P R    +EV   V    +  + A      A++ +      G     +   L
Sbjct: 469 IARVAEVAPERIPGFDEVRDKVVVAVREDEGARLALKAADEALA-----GVRDGQLPGAL 523

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
            + + T+    R  N         ++       + V           VV    +  V P 
Sbjct: 524 ASRVKTSPLFGRDGNIPGLGVDPALAAAAFSAEKGVWSDKAHATPQGVVVLRVHEVVRPT 583

Query: 585 QEK-----DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
             +           +     +++  + +  L ++  V V D  +
Sbjct: 584 DAQWQAVASTVKETILAAKREEMFRAFLTTLHAKGKVEVKDASV 627


>gi|73541077|ref|YP_295597.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
 gi|72118490|gb|AAZ60753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
          Length = 649

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 115/647 (17%), Positives = 235/647 (36%), Gaps = 45/647 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  +  V++F  F+ +G+      +  S  V  V  + +      N  
Sbjct: 1   MLDFVRNNRRLMLLLLL-VLVFPSFVFFGVESYSRFMDSSHDVAKVDGRAITVQEVDNVV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + Q +G   +  +     L K + D L+    +   +    L   + R++  I 
Sbjct: 60  REQSERMRQMLGASYDPRQFEGPMLRKNVTDQLILQRVVANEVAREHLTVSNARLYEAIN 119

Query: 121 RSPLF----HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             P        +D       +V  LA +G+  +++       L+   +     G      
Sbjct: 120 SIPAIAQLPRKQDGSVDDKAYVQLLAAQGMTPEQFDARMRFDLATQQLGTSIAGTAFVPK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            LLD+      + R V  ++       +   P  A L  ++E ++  +  PE  ++ Y++
Sbjct: 180 SLLDRLIAVRDQQRDVQALLFKPADYASKVQPDAAALKAYYESHQSAFSVPEQAKVEYVV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-- 294
                      +S +EL++ Y+ N  ++ + E R    ++    K+   A +   K K  
Sbjct: 240 LSGDALAASQAVSPEELKSYYDSNIARFRTEEQRRASHILIAAPKDGPAAARQAAKDKAG 299

Query: 295 -----------KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                       F  +A +Q +          LG      +      D++++L K G  +
Sbjct: 300 KLLEELRKHPDTFADVARKQSQDPGSAEKGGDLGFMGHGALVKP-FEDAMYAL-KDGQIS 357

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+   +GY I  ++ IKPS T     V+ ++  ++R   A++K  ED       +    
Sbjct: 358 DVVETDYGYHIIKLTGIKPSETKPLDAVRPELEAELRKQFAAKKYAEDADAFGNMVYEQA 417

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            S+   + + K+       V        G+        E++L  +F  D   +K +T A+
Sbjct: 418 DSLKPAADKFKLTIQTADNVTRQPNPALGQ--NNPLNNEKVLKALFSDDAIKNKRNTEAV 475

Query: 459 PDG--SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
             G  + +  +I +  PA  RK EEV   V++ +   + AE         V    K    
Sbjct: 476 QVGPTTLVAARIVDYRPATVRKFEEVEAKVREGYIAQQAAELARKDGEARVEALKKS--- 532

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
             D  +  GA       ++R   E        +  +       +      +     Y V+
Sbjct: 533 --DSAQGFGA----VTMVSRAKAEG--MEPKAVEAIMRADTSKLPAVVGVDLGANGYAVY 584

Query: 575 KVTNSKVGPVQ---EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           ++T           ++      L+Q+  +  L +    LK++  V +
Sbjct: 585 RITKISQPQQANEGQRQAEAQQLSQLAGQTELGAYYESLKARSKVKI 631


>gi|330808576|ref|YP_004353038.1| peptidylprolyl isomerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376684|gb|AEA68034.1| putative peptidylprolyl isomerase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 623

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/639 (15%), Positives = 225/639 (35%), Gaps = 40/639 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+     + G      + + S+    V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIVALMALTGFDAIFKATTNSNEAAKVNGENISQNELSQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   ++       L    L  L+    L Q   D         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDASLLDEKMLRDSALKGLIDRKLLLQGAHDAKFAFSEAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KFS + F   + + G +  ++     + +    +     G    ++  + 
Sbjct: 121 QTPEFQ-VDGKFSPERFDQVIRQLGYSRMQFRQMLAQEMLIGQLRAGLAGSGFVTDAQVL 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  LN +  PA    ++  +  +++++   +  P+   I Y+     
Sbjct: 180 AFARLEKQTR--DFATLNIKADPASVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKKA 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               ++ + +++LQA Y+K        E R    ++            + + +E    L 
Sbjct: 238 SFFDQVSVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKVTEAQAKAKIEEIQARLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  +     + G    ++   + D     ++++L K    +  +   FG 
Sbjct: 296 KGESFEALAKEFSQDPGSANNGGDLGYAGPGVYDPEFEKALYALNKD-QVSAPVRTDFGL 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     +F  +K  +  +++  +  ++  E  K+LE+     + + + ++  
Sbjct: 355 HLIKLLGVEAPEVPTFASLKDKLTRELKTQQVEQRFVEATKQLEDASFEASDLAQPAQDL 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
           K+           G +        I     ++   F  +  +  +    + L   + + +
Sbjct: 415 KLTVHTSAPFGREGGE-------GIAANRAVVTAAFSPEVLNEGANSTAIELDPETVVVL 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           + KE        LE V   ++        +    ++A++L+                 G 
Sbjct: 468 RAKEHRKPEQLPLESVAGPIRAQLTKEHASAAAKTRADELIASLRDGKVALDKPVDGQG- 526

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--FKVTN 578
               T    R     +      +  +F  P    K  P      + +G   VV    V  
Sbjct: 527 -WKATQAATRN---QEGIDPAVLQALFRMPKPESKDKPTFTSVTLPDGSLMVVRLNGVNE 582

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +     +EK ++  YL   + +    +    L+SQ  + 
Sbjct: 583 AAAPTDEEKAEYRRYLASRVGQQDFAAYRKQLESQAEIK 621


>gi|332290245|ref|YP_004421097.1| peptidyl-prolyl cis-trans isomerase [Gallibacterium anatis UMN179]
 gi|330433141|gb|AEC18200.1| peptidyl-prolyl cis-trans isomerase [Gallibacterium anatis UMN179]
          Length = 621

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 103/641 (16%), Positives = 247/641 (38%), Gaps = 37/641 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E +R  + + V K+ + V+ + F++ G++  L S   +S   +V   ++    F   +
Sbjct: 1   MMEKLRGYTHSMVWKVLMSVIAISFVLSGVAGYLISRQNTS-AATVNGVEISQRLFQQQY 59

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + +   ++ ++G    +       + GL   +LD L+    L Q+ +++GL      +  
Sbjct: 60  QSQYQQLAMQMGDKFAAVADSAEFTNGLRHSVLDRLIDDELLRQYSKELGLGVGDEAIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F  KD +F + V+   LA   +   +Y +   + L  + ++G  +     +  
Sbjct: 120 AIVMNPAFQ-KDGQFDNAVYQQLLANNNLTPDQYAEIVRQDLVLSQLMGSLLASDFLTEA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              Q  + +F+ RSV         + A    S+  + +++  +K  +  PE  ++ YI  
Sbjct: 179 QQQQFVKLFFQKRSVRLATFPVADLAAKQTISDQEIEKYYNDHKAAFATPELVKVQYIDV 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           +  +  K +++S+ E+   Y+ NK ++     + +  +    Q EAD+ +  L++G  F 
Sbjct: 239 NKDKLAKDLQVSDVEVAQYYQDNKSQFMGQAKQHIAHIQVNTQAEADDIYNKLQQGADFA 298

Query: 298 QLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +LA++       +++   L       +P     ++       G ++        Y I  V
Sbjct: 299 ELAKKYSIDRLTAVNGGDLSWVVAGQLPKA--FEAAADNTAVGAYSKPTKVDDKYHIIKV 356

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
                +  +  +EVK  I + +R   A  K     K + +      S   ++   K  ++
Sbjct: 357 LARNEATVLPLEEVKSRITDLVRQDLAERKYFSVEKVVADKAFEDQS--GLATAAKEGNL 414

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKES 471
            +    +  +D    +V A      ++  +F  +          +++ +   +  ++ + 
Sbjct: 415 TVEETGYFARD----DVPAALNFSNVISEMFSPELVQGGMNSQMISVGENHSVIFRVVDY 470

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
             A  + L E  T +    +  K       +   LV +      +  +  +NL      +
Sbjct: 471 KAAGTKPLAEAKTQITALLQREKAENIELDRVKALVAKLQAGDNSAVEFKQNLTTVYAES 530

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKC----FPIENGLSYVVFKVTNSKVG--PVQ 585
                              Q+F+ P+           ++     V   +   + G    +
Sbjct: 531 K------------NPALDKQIFAMPLPTAGKPSYHVGVDQNGDIVAIALDKVEDGQLSAE 578

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
           ++  F+S L Q    DL  +++  L+ +  + ++  ++ + 
Sbjct: 579 QQKAFVSQLMQFRVNDLQATLLKALREKAKIEINQEMLDQL 619


>gi|163746559|ref|ZP_02153917.1| peptidyl-prolyl cis-trans isomerse D, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380444|gb|EDQ04855.1| peptidyl-prolyl cis-trans isomerse D, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 614

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/594 (21%), Positives = 253/594 (42%), Gaps = 27/594 (4%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
                ++ SVG + +    +    +QE+  I  + G  ++  RA+ +GLD+ +L  +V  
Sbjct: 33  SGNLRSIGSVGDKSISVDQYARQLQQEIRAIEAQTGESLSFARAQEMGLDRAVLQRIVRN 92

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             LD    ++G+      +  EI     F G D  F  + +   L + G++E E+     
Sbjct: 93  RALDHEAAEMGISIGDATLRDEIVAISAFQGIDGNFDREGYRFALQQSGMSEAEFETSIR 152

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQ 215
           +  +R  +    +GG+   +        +  E RS  +  L+   +   +A+P+   L  
Sbjct: 153 EESARGLLQRAVLGGVSMPDTYARTLVDYVAEERSFTWARLSADDLDTPVAEPTEEELQA 212

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +++   D++  P  K I+Y      +   ++E+  +EL+AEY+    +Y  PE R VE+L
Sbjct: 213 YYDANADDFMLPASKSITYAWLRPEDLLDEVEVPEEELRAEYDARSSEYDQPERRLVERL 272

Query: 276 VFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           VF NQ+ AD+A  +L+  G  F  L EE+G +L+D+ +G  +K  +      D++FS A+
Sbjct: 273 VFANQEAADQAAAALEVDGTTFEALVEERGLALADVDMGDVAKSDLDGA--GDAVFS-AE 329

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G     +  S G  +  V+ I P+  V F+E ++ +   + I++A+  V+   + +++ 
Sbjct: 330 SGAIVGPLPSSLGPALFRVNAILPAQNVPFEEAREVLEETLAISRATRAVEARAQEIDDR 389

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           LA G +++++ +  K   ++L  +D+      G  +AA     +    +     P     
Sbjct: 390 LAGGATLEDLGKETK---MNLGTIDWTEDSSDG--IAAYGAFREAAAGLSADAFP----Q 440

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
              L DG    +++ E+ P R    +    +V+  W+  +  E +++KA  L  + +  G
Sbjct: 441 IDQLDDGGIFAMRLDETKPERPNPFDAARAEVEAAWRNAQIVEALTAKAENLTADLADGG 500

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
                  +  G        + R    +       + QVF      V   P   G   VV 
Sbjct: 501 DF-----EAAGLEPQLGEGMTRSSYVDGT-PDTFMDQVFDLDEGGVAVLPA--GDHVVVL 552

Query: 575 KVTNSKVGPVQEK-----DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           +V +       ++     D+    L Q + + L D     +       +    +
Sbjct: 553 RVDSVTAAGENDQTQALMDRLSQQLDQALAQGLFDIYSNAVMRDADPQIDQRAV 606


>gi|78356452|ref|YP_387901.1| peptidyl-prolyl cis-trans isomerse domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218857|gb|ABB38206.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 629

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/645 (18%), Positives = 251/645 (38%), Gaps = 37/645 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR+ +++W  KI   ++ + F+ WG+         S+ V  VG+  +  ++F   +
Sbjct: 1   MLDSIRQNAQSWGVKIAFGLIIIVFVFWGVGS--MDNQPSNVVAKVGKTSITVNAFAREY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++ ++  +    V SE  +  GL  ++L+ ++S   L Q  E  GLE     +   IA
Sbjct: 59  EQQVELVRAQFPD-VTSEDLKQAGLKMRVLNQMISEVLLVQQAEKQGLEVSPAELKLRIA 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P+F+  D  F  + +   LA +G     Y D   + +    +          +     
Sbjct: 118 EIPVFNDADGNFDGERYKQVLAAQGTTPGAYEDKIRRSMLAQKMRDFITMPAAVTAEEAK 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E RS+DY++    +      P    ++ ++++  +NY+ P    + Y++    
Sbjct: 178 AMFLYSAERRSMDYVLFAAENYLDQVKPGEEQISAFYKQNIENYKVPPRVTLQYVMITPA 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288
                  +S+D + A YE NKE +   E      ++               +K+ +E ++
Sbjct: 238 ALADGASVSDDRIAAYYEDNKESFRQEERVHARHILVLADAGASEEKVAAAEKKINELYE 297

Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            ++KG  F ++A+E  +  S      LG F +  +       +    A  G  T  +   
Sbjct: 298 RIRKGADFAKVAKEASEGPSAPLGGDLGWFGRGQMV-PEFEQAA-FAAAAGQVTAPVRTQ 355

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           FG+ I  V   + +   +  EV  +I++++    A EKV        E L  G  +  ++
Sbjct: 356 FGFHIIKVEEKENARIRTLDEVHDEISHRLAEEAALEKVTPTLDAALEALLAGEDLPAVA 415

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
            R  +   D      +G+  + +    +  +   +  +F   +    D  + + +G YM 
Sbjct: 416 ERMHLSLRD------SGQFTRAQATGLLGVEPASVELIFTTPEGSVIDTPMEV-EGGYML 468

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
            ++  S     R+L+ V  DV    K  +  +  +  A + V     +G   +       
Sbjct: 469 AKVVSSKEETYRELDVVKADVIARLKQQEAMKLAADAAREAVAALKNDGSLPQSAA---- 524

Query: 526 ASLLTTNQINRMDNENKFF-GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
           A +  +    R           D  S +F    +       +     VV K         
Sbjct: 525 ARVKRSEPFGRQGFIPGVGQAPDVTSAIFKAADDAWIAEAFQTPTGAVVAKRAAVLTPDE 584

Query: 585 QE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT-VHDNLIQ 624
            +    KD+F+  + Q   ++L  + +  L ++  V  V++ +++
Sbjct: 585 TQWAQVKDRFVDAMLQSKREELYRAYMQDLLTKTKVELVNNKILE 629


>gi|91793843|ref|YP_563494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
 gi|91715845|gb|ABE55771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
          Length = 625

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 110/636 (17%), Positives = 234/636 (36%), Gaps = 35/636 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+  VAK  LV++   F   G+S  L   S    V  V   +V  S    ++
Sbjct: 1   MLEKIREGSQGVVAKGILVLVIFSFAFAGVSSYL-GTSTDLPVAIVNGDEVSTSELEQAF 59

Query: 61  KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   I Q++G +     ++     G+ + +L+ LV    +DQ    +GL     ++  
Sbjct: 60  QNERSRIEQQLGDMFETLAADDTYMAGIKQSVLEKLVGDKLIDQAAFALGLRVSDEQIKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D  F +  + + L + G     + +     ++R  ++   VG     + 
Sbjct: 120 AIVSEPAFQ-TDGVFDNSRYQAVLRQLGYQAVSFKNMMRVDMTRRQLLSALVGSEFALDG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              Q      + R + Y+ + +    A    ++     +++  +  Y +PE   + Y+  
Sbjct: 179 EAKQLAEVQGQTRDIRYLTVESNQFLADNSVTDEEAQAYYDANQSQYLSPEKVSLEYLEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK------ 291
           +V E  K I  S +E++A Y++++++Y + E R    ++     +               
Sbjct: 239 NVAELAKDITTSPEEVKAYYDEHQKQYQTAEKRLAAHILINKSDDDAADEAKAAAILAKL 298

Query: 292 -KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             G+ F  LA+   +       G    + +  +   +  +++FSL +KG  + ++   FG
Sbjct: 299 TAGESFEALAKTDSEDKFSGEQGGKLDWFEPGVMAPAFDEALFSL-EKGAHSGLVSTEFG 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y I  + +++      F +V+  I  Q++  KA +K      +L +        D +   
Sbjct: 358 YHIIKLLDVQAGQLAPFADVEAKIVAQIQEKKALDKFYGLQTKLADTSYEIP--DTLVDA 415

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
            K +   +   +   ++    E     + +                  + +     + V+
Sbjct: 416 AKAIGASIKTTELFDRNAVPAEFNQADFIKAAFSDQVLASGM--NSDVIEIAPNHILVVR 473

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           +KE   A       V   +    +  K  E   +KA + + +      +   +     A 
Sbjct: 474 MKEHQAAGTLSFSSVKDSIIARLQQDKAKEAALNKAVEYMAQLKDSTFDASSLSLTTQAK 533

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVE-----MVKCFPIENGLSYVVF-KVTNSKV 581
           L   +Q                ++ F  PV       +    + +G + ++  KV  ++ 
Sbjct: 534 LGRYSQ---------DVDSGIAAKAFQMPVPAKDAVSIDTAELASGYAIILLDKVNPAEG 584

Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                       LT   ++     +IA LK++  + 
Sbjct: 585 INDNVLSAMKQRLTPQYSEADYRGLIASLKAKADIE 620


>gi|30250138|ref|NP_842208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
 gi|30139245|emb|CAD86118.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
          Length = 630

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 94/646 (14%), Positives = 258/646 (39%), Gaps = 47/646 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + +    +  V +I L++  +PF+ WG+     S   +     V  +++    +  + 
Sbjct: 1   MFDFV--NKKKTVVQIVLLIAVLPFMFWGVESY-RSAGDAGYAAVVDGEEISRQEYEQAI 57

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   +   +G   ++    +  +   +L+NL+    L +  E +GL     R+  EI 
Sbjct: 58  RNQQENLRNMLGEKFDASLLDNPQMRLAVLENLIQERLLRREAERVGLTVLDSRLTAEIQ 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               FH +D KFS+  +   L R+G++   +       L R  ++    G +     +  
Sbjct: 118 NISFFH-EDEKFSYQRYRDLLQRQGMSPAMFEARVAGELMRQQLLEGITGSVIVPRTVAG 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +          ++ + ++       A+P  A +  +++ +  ++  PE  ++ Y++  + 
Sbjct: 177 KVASLSATMYEINRMTISPEQYIDQAEPDEAAIQSYYDSHYQDFTLPERVKVEYVVLSLD 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF---- 296
           E  ++ +IS++E++  Y+++++++   E R    ++     +A E  ++  K +      
Sbjct: 237 ELARQEQISDEEIRKYYDEHQDEFGQAEERRASHILLSVPADATEEQKTSTKARAEQILE 296

Query: 297 -------------IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                         +L+E+ G +     LG F++  +      D +F + ++G+    + 
Sbjct: 297 QVRQDPEKLPELAAELSEDPGSAKEGGDLGFFARGLMVKP-FEDEVFQM-QRGEIRGPVE 354

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402
             FG+ I  ++ +K +      +VK+ I   ++  K +++  E  +     +     ++ 
Sbjct: 355 TPFGFHIIRLTEVKGADVAGLDDVKEQIRQLLQHQKVADRFGELSEDFSNIVYEQNDTLQ 414

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPD 460
            +++   +       +D   ++       ++   E++L  +F +          ++ +  
Sbjct: 415 PVAQMFNLSVQQSDWIDRNSREP------SVITNERMLQAIFSESAVRDHFNTESIEVAP 468

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
            +++  ++ E  PA  + +  V   +    K    +E+  ++  Q +    + G+    +
Sbjct: 469 DTFVAARVVEHRPASAQSIGLVKDRIVALLKQQLASEQAENEGKQKLAGL-QAGEVDESL 527

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTN 578
                     +++++    + K    + +  +F   VE +  +     +   Y + ++  
Sbjct: 528 ------EWGESSEVS--FAQKKGDNEEILHALFQTDVEKLPAYTGVVTSKGGYDLIRINQ 579

Query: 579 SKVGPVQEKDK----FISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
            K   +  +          L Q+  ++ L + IA L+ +Y VT+  
Sbjct: 580 VKRPDIGNESSQYNLLFDQLQQIYGQEELSAYIAGLRQRYEVTIRP 625


>gi|113461230|ref|YP_719299.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus somnus 129PT]
 gi|112823273|gb|ABI25362.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus somnus 129PT]
          Length = 618

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/639 (18%), Positives = 262/639 (41%), Gaps = 41/639 (6%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E +  AS   V+KI   ++ V F++ G++  +F +   ++V  V  +++    F+  + 
Sbjct: 3   MEKLNNASSGIVSKIIFGLIGVSFVLSGVAGYMF-IRTDTSVAKVNGEEISQQVFLQQYN 61

Query: 62  QELGMISQKIGFVVNSERARSVG--LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            E   +S+ +G    +E A S    L  ++LD L++   L Q+ +++ L     +V   I
Sbjct: 62  NEYQRLSENLGAKF-AEVADSAAKHLRHEVLDRLINQELLRQYAQELKLGISDKQVSLAI 120

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
             SP+F  +  KF + ++   LA  GI+   Y  +  + L    +            + L
Sbjct: 121 VNSPMFQNE-GKFDNKIYQQILASSGISSDTYAAYVREGLVLEQLQQGIANSDFQVPIQL 179

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           ++  + +F+ R V   VL+          +   + Q+++  K N+  PE  ++ Y+    
Sbjct: 180 NELAKNFFQRRDVRLAVLSLDDEMQKQTVTEQEIEQYYQANKANFAVPERVKVQYLDLTR 239

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
              ++K++IS+ E+   Y+ NK +Y +   + +  +  P ++EA   + +L+ G+ F  L
Sbjct: 240 AIADQKVKISDIEIAQYYQDNKAQYIT---KHLAHIQLPTEQEAQSVYANLQNGEDFAAL 296

Query: 300 AEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A+        +     L       +P ++   ++ +L   G+++  +     Y I  V +
Sbjct: 297 AKLYSMDTLSAPKGGDLDWVVNGMMP-LAFESAV-TLLNVGEYSQPVKVDNAYHIIKVLD 354

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSID 414
           +K   T    +V+++IA ++R    +       K++ E       S++E +   K+  +D
Sbjct: 355 MK---TRELNDVREEIATKLRNDLVTNAFYSLEKQMNEKAFENPQSLEEAA---KVAGLD 408

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESI 472
           +   D+  +     E+        +   +F  D          + + D   + +++ +  
Sbjct: 409 IKETDYFSRQDLPPELNY----SHIATAIFNSDLMQGGINSEAINVGDQHSVLLRVVDYK 464

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           P   R L E   D++   K  K    + + A ++V E +       D             
Sbjct: 465 PEGIRTLAEATADIETYLKRQKAETTLFNMAEKIVAEMN----TITDFKLPSYIHFSEKE 520

Query: 533 QINRMDNENKFFGYDGISQVFSGP---VEMVKCFPIENGLSYVVF----KVTNSKVGPVQ 585
                D +NK      +  +FS              +N    +VF     V +S++ P +
Sbjct: 521 TWVYRDADNKDPVLGKV--IFSMKKPDPGKTTISVAKNMFGDIVFVELMNVEDSQLTP-E 577

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +K  F   + ++    L + +I  L+ + S+ ++   I 
Sbjct: 578 QKQLFGVQIAEIKQFSLSNLLIQALREKASIEINTKFIN 616


>gi|52425898|ref|YP_089035.1| SurA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307950|gb|AAU38450.1| SurA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 622

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/635 (17%), Positives = 261/635 (41%), Gaps = 29/635 (4%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E +  AS +  +KI   ++ V F++ G++  + + + +S V  +  +++   +F   + 
Sbjct: 3   MEKMHNASNSIFSKIIFALISVAFVVSGMAGYMVATADTSAV-KINGEEISQQAFQQQYN 61

Query: 62  QELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            E   +SQ++G   ++       S GL K +L+ L+    L Q++ D+ L A    V  E
Sbjct: 62  DEYQRLSQQLGAQFSAVADTPEFSEGLRKSVLNRLIDQELLRQYVTDLKLVASDASVKQE 121

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I  +P F   D KF ++ +   L    +    Y ++  + L    +     G +      
Sbjct: 122 IVTTPAFQ-ADGKFDNNAYQQTLRANNMTADMYAEYVREALRLDQLQSGLAGTVLMLPAQ 180

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            ++  + +F+ R+     L      A    ++  +  ++   K  +  PE  ++ Y+   
Sbjct: 181 QEEFAKLFFQKRTFRLAKLPLTAEMAKQTVTDQEVADYYNANKSAFMVPELVKVQYLDIT 240

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
               EK +++++ E+Q  Y+ NK ++ S     +  + F  + +A +A+Q+L+ G  F  
Sbjct: 241 RAAAEKAVKVTDVEIQQYYQDNKAQFVSKAQDRLAHIQFAKETDALDAYQALQNGADFAA 300

Query: 299 LAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+E+       ++   LG  +   +P  +  ++  +L + G ++  +     Y I  + 
Sbjct: 301 LAKEKSLDKPSAVNGGELGWLNAGDLPK-AFEEAAAAL-QIGQYSQPVKVDNQYHIIKLE 358

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           + K     S +EVK  IA+Q+R    + +     K++ E      S  E +   K+  ++
Sbjct: 359 DRKEPKAQSLEEVKDLIASQIRQDLLNNQFYSLEKQVAEKAFEDQSSLEAA--AKVAGVE 416

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESI 472
           +   D+  +    K++ A      +   +F  D          + + D   + V++ +  
Sbjct: 417 IKETDYFSR----KDIPAALNFPSVASAIFDGDISQGNQNSEPMNVADQHSIVVRVVDHK 472

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
               + LEE   ++    K  K    +  +AN+ V E +        +GK    +     
Sbjct: 473 AEGTKSLEEAKAEITAYLKRQKAETVMLEQANKTVEELN--------LGKQPALNFAAAE 524

Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKDKF 590
                +N++        S       +        +    V+  +T  + G    ++  +F
Sbjct: 525 TWVYAENKDPALNNAIFSMAKPEQDKTTYAAAKADNGDVVIVALTAVENGEVSAEQGAQF 584

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            + + Q    DL  +++  L+++  + V++  +++
Sbjct: 585 AAQVMQAEQTDLQANLLKSLRNKAKIEVNEEFMKQ 619


>gi|119897859|ref|YP_933072.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72]
 gi|119670272|emb|CAL94185.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72]
          Length = 631

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 110/642 (17%), Positives = 239/642 (37%), Gaps = 44/642 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + +R   R  VA+I L +L +PF  +GL        G   V  V    +  + F  + 
Sbjct: 1   MFDAVRNNKR--VAQIILALLIIPFAFFGLDAYFKDGPGGGEVAVVDGAPITAAEFDRAL 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++    +  ++G  V+S    S  L + +L+ +VS   L ++  D  +     ++   IA
Sbjct: 59  RERQDRLRNEMGGPVDSALLESPALRRAVLETMVSQRLLARYAADRHMVVTPQQLQETIA 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               FH ++ +FS   +   L  + +    +     + +    +                
Sbjct: 119 AVEAFH-ENGQFSLQRYQDVLRAQNMTPAGFEARLAQDVRIQQLAASIGEAAFTPAASAK 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      E R V  +             ++     +++     +  P   +  Y++ D  
Sbjct: 178 RFLLAQLEEREVRELRFPASRYLGEVKLADGAAQAFYDANAAGFEQPARLKAEYVVLDEA 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288
              K++++S++E++A Y+ N  ++  PE R    ++      A            DE   
Sbjct: 238 ALAKQVKVSDEEVRAFYDGNPGRFGQPEERRARHILIQVDAGAPEAEVAKAKAAIDEIAA 297

Query: 289 SLKK-GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           +L K   +F  LA+    + G +     LG F +  +      D+ F  AK G   PV+ 
Sbjct: 298 TLAKDPGRFEALAKASSQDSGSAARGGDLGFFGRGAMVKP-FEDAAFGQAK-GVVGPVVR 355

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402
             FG+ I  V++IKP+ T S   V+ +I +++R   A  +  E        +     S+ 
Sbjct: 356 SDFGFHIIQVTDIKPATTRSLDSVRGEIVDELRKQAAGRRFAEVANDFSNMVYEQPDSLK 415

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPD 460
            ++ +  +       V  +    +G +        +L+  +F +D   +  +T  + L  
Sbjct: 416 PVAEQFGL------EVRTSDWVQRGADAVGSVSSSKLVDALFAEDASKNGRNTQAIELGP 469

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
            +    ++    PA+    ++V  ++++  +  + A+  + + +  +    K        
Sbjct: 470 NALAAGRVAAFEPAQRLPFDQVRAEIEQQLRNEEAAKLATERGSAALAALEK-------- 521

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
           G+  G       ++ R            +    SG +       +  G  Y V+++    
Sbjct: 522 GEAAGGEFSAARKLQRGAPALPAAAMQAVFAAPSGKLPAHVGVALPEG-GYAVYRIDAVN 580

Query: 581 VGPVQEKD----KFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
              + + D       S  ++M+ +    S +A L+ +Y V +
Sbjct: 581 RPVLADDDPRIAAVASQYSRMVAERDFGSFLAGLRERYKVEI 622


>gi|16126137|ref|NP_420701.1| rotamase family protein [Caulobacter crescentus CB15]
 gi|221234908|ref|YP_002517344.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
 gi|13423343|gb|AAK23869.1| rotamase family protein [Caulobacter crescentus CB15]
 gi|220964080|gb|ACL95436.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
          Length = 654

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/643 (19%), Positives = 253/643 (39%), Gaps = 23/643 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML   RK +++  A +   +L V F I+G+SD      GS  V+S G + +    F   +
Sbjct: 1   MLAGFRKFAKSPFAVVLFGLLIVSFAIFGISDVFKGPQGSG-VISAGSRSMSAIDFKQRF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                 + Q+ G  +  ++A   G+D++I+  LV   +L   +  +G+      V   + 
Sbjct: 60  DNYRKAMEQQNGTTLTPDQAVEQGVDRQIVQELVLQESLAAALHKMGVAPSDKLVADTVH 119

Query: 121 RSPL--------FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
                       F     KF    + + + + G+  + Y       +++T        G+
Sbjct: 120 EQMSQLPPTTRPFDPITGKFDSRAYATLMQQNGLTPETYEASLRDEIAQTHFFSAIADGL 179

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
           +   +       +  E R V   V+N   V     P++A LT + ++  D    PE + +
Sbjct: 180 KAPRIYAALQGAYLLEAREVSAFVVNPSTVQRPNPPTDAQLTAFMKENADRLTRPETRVL 239

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           S +       E  + I+  ++Q  ++  K+    PE RT+ Q+  P+ K A    Q L K
Sbjct: 240 SIMRVSATALEPSVTINPADVQKAFDFRKDSLARPETRTIVQIAAPDAKAAAVISQRLGK 299

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           G+    +A+  GK+   + L    K  +PD  +AD+ F+L + G  +  I G  G  +  
Sbjct: 300 GEDPAAVAKAYGKTP--LVLTDKPKSAVPDRKVADAAFAL-QTGQVSGPIIGDLGVAVVK 356

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V+ I P    +   V+  I  ++R   A  K  E  +  ++    G  +   + +   + 
Sbjct: 357 VTKITPGAVATLDSVRPQIEAEVRSQTAQAKAYEQTQTYQDARDAGADLISAASKAGALV 416

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
           I    V   G D  G+  A +     ++   F       +   V    G Y  V+++  +
Sbjct: 417 ITTAPVTAQGTDQMGQPFAGL--TPDIIKTAFDLSQG-GESELVEAGKGEYYAVKVERIV 473

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           PA    L EV   +   W   + A+ + +KA++L     K+G++   +     +++    
Sbjct: 474 PAALPPLAEVKPQLTAVWFGQEMAKRMKAKADELAAR-VKKGESLEAVATAAQSNVQKIP 532

Query: 533 -QINRMDNENKF-FGYDGISQVFSGPVEMVKCF-PIENGLSYVVFKVTNSKVGPVQEKDK 589
             + R + +     G + +   F+     V      + G +YVV K+   +  P     +
Sbjct: 533 GGLTRQNAQQHVALGQEFLGAAFTAKPGAVFTARAGQQGQAYVVAKLDAVRAAPTANVAQ 592

Query: 590 FI----SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
                       + +DL ++     ++Q     +  L ++ + 
Sbjct: 593 IAVLAQGQAANGLMRDLAEATRVVARTQMKAKSNLTLARQAIG 635


>gi|289664180|ref|ZP_06485761.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 656

 Score =  369 bits (947), Expect = e-99,   Method: Composition-based stats.
 Identities = 108/672 (16%), Positives = 238/672 (35%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L VPFL   + ++     G++ V  V              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMVPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +     S     ++LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   IA    F   D KFS D + + LA+        ++       
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIQAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+  +L    V   A  S+A + QW+E
Sbjct: 179 LQQSVIPQAVAESGFATKAEFERLLKLMGETRDVELAMLPPSAV-DTAPVSDAQIKQWYE 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +  +           L+  YE+ K ++  P+ R    ++  
Sbjct: 238 GHTQDFRQPETVTIEYVELNAAKMPPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297

Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
              +A     +  K           G  F  LA+   +          LG   K  +   
Sbjct: 298 AGSDAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKNAGGDLGWVEKGAMVKP 357

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++FS+ K GD    I   FGY +  +  +K     SF++V+  +A +     A + 
Sbjct: 358 -FEDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + +    T+++  +++  +    L             + + +     +L  
Sbjct: 416 FADISGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRT-------DASGVAANPAVLRA 468

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V    +  ++ +  +
Sbjct: 469 AFSETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRSEKAAA 528

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           + A+ L+    K G+  + +  +    +     + R               +F+ P    
Sbjct: 529 AAADALLARVQK-GETLQALAASEKLQVQPIPGLPRT---APIPTPAANRAIFTAPRPTK 584

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
               +     +G  + VF ++ +  G     P +++      L+Q+   +   + +  ++
Sbjct: 585 GKPSVGKVQLDGGRFAVFVISKATPGDLKQMPAEQQAMLREQLSQIDGNNAAQAYVKEMR 644

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 645 KRYKIQIEEAQL 656


>gi|293391759|ref|ZP_06636093.1| SurA protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952293|gb|EFE02412.1| SurA protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 615

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 118/636 (18%), Positives = 248/636 (38%), Gaps = 37/636 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E +  AS  W +K     + V F+I  ++  L+S   SS    V  +++       +++
Sbjct: 3   MEKLHGASNNWASKFLFGFITVTFVISSMAGYLYSRIDSS-AAKVNGEEIS----QQAFQ 57

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            +  + SQ +             L +++L +L+    L Q+++D+ L     R+  EI  
Sbjct: 58  NQYNIASQNLSPQEADSPTVVANLKRQVLSSLIDQELLRQYVKDLKLGVSDERIKQEIVT 117

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
           +P F   + KF + ++   L   GI+ + Y  +  + L    +            +  + 
Sbjct: 118 TPSFQN-NGKFDNVLYQQLLQSNGISAETYAGYVREALRLEQLQSGLGITAFTVPVQQEA 176

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
             + +F+ R V    L+     A    S   +  +++ +K ++  PE  ++ Y+      
Sbjct: 177 LAKLFFQRRDVRLATLSLADEIAKQTVSAEEIQAYYDAHKADFTLPELVKVQYLDLSGAN 236

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
            EK I IS+ E+   Y+ NK ++ +   + +  +    +++A + +Q L+ G +F  LA+
Sbjct: 237 MEKNINISDVEIAQYYQDNKSQFMTQGQQRLAHIEVKTEQQAQDLYQQLQNGAEFSTLAK 296

Query: 302 EQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                         L   S    P V   D+  +L   G F+  +     Y I  V   K
Sbjct: 297 NHSIDPISAEKGGDLSWVSAGEFPKV-FEDAANAL-DVGKFSQPVKLDNSYHIILVEGRK 354

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
            S  +  + V+  I  Q+R    + +     KR+ E     +S    +       + +  
Sbjct: 355 DSAVLPLERVRPQIVAQIRQNLVNNQFFSVEKRVAEKAFEDSSSLNAAAEAG--GVKVQE 412

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPAR 475
             +  +    K++ A      ++  +F  D     S    +++ D   + +++ E     
Sbjct: 413 TGYFSR----KDIPAALNYPNVVSAIFDSDISQGGSNSEPMSIGDQHSVVIRVLEHKAES 468

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
            + L+E   D+    K  K    V ++AN+LV E +  GK    +          T  + 
Sbjct: 469 VKSLDEAKNDITARLKRQKAEAVVLAEANKLVQELT-AGKTVDSL------KFGATQSLV 521

Query: 536 RMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVGP--VQEKDK 589
             +N +        + VF+ P       V     E     VV  +     G    QE+ +
Sbjct: 522 FAENNDPML----YNAVFAMPKPTEGKAVYQATKETKGDIVVIALDKVVDGALSEQEQQQ 577

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           F   L +     L ++++  L+++  + ++D+++ +
Sbjct: 578 FAVQLARADQIALQNNLLNALRAKAKIEINDSVVNQ 613


>gi|289668772|ref|ZP_06489847.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 656

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 109/672 (16%), Positives = 238/672 (35%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L VPFL   + ++     G++ V  V              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMVPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +     S     ++LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   IA    F   D KFS D + + LA+        ++       
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIQAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+  +L    V   A  S+A + QW+E
Sbjct: 179 LQQSVIPQAVAESGFATKAEFERLLKLMGETRDVELAMLPPSAV-DTAPVSDAQIKQWYE 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +  +           L+  YE+ K ++  P+ R    ++  
Sbjct: 238 GHTQDFRQPETVTIEYVELNAAKMPPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297

Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
              +A     +  K           G  F  LA+   +          LG   K  +   
Sbjct: 298 AGSDAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKNAGGDLGWVEKGAMVKP 357

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++FS+ K GD    I   FGY +  +  +K     SF++V+  +A +     A + 
Sbjct: 358 -FEDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + +    T+++  +++  +    L             + + +     +L  
Sbjct: 416 FADISGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRT-------DASGVAANPAVLRA 468

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V    +  ++ +  +
Sbjct: 469 AFSETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRSEKAAA 528

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           + A+ L+    K G+  + +  +    +     + R               +FS P    
Sbjct: 529 AAADALLARVQK-GETLQALAASEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
               +     +G  + VF ++ +  G     P +++      L+Q+   +   + +  ++
Sbjct: 585 GKPSVGKVQLDGGRFAVFVISKATPGDLKQMPAEQQAMLREQLSQIDGNNAAQAYVKEMR 644

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 645 KRYKIQIEEAQL 656


>gi|163742798|ref|ZP_02150183.1| hypothetical protein RG210_15675 [Phaeobacter gallaeciensis 2.10]
 gi|161384053|gb|EDQ08437.1| hypothetical protein RG210_15675 [Phaeobacter gallaeciensis 2.10]
          Length = 613

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 131/629 (20%), Positives = 253/629 (40%), Gaps = 28/629 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   ++K S T+V  I + +L +    +G  +   SVS    V  VG Q+V    +    
Sbjct: 1   MAAGMKKLSNTFV-WILMGMLIIGLAGFGAVNFTGSVSS---VAVVGDQEVSVDDYAREL 56

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++E   +  + G  V   +  ++GLD+ +L  L++ A LDQ   D+GL      ++ EI+
Sbjct: 57  QREQRALEAQTGQRVPIAQMTALGLDRVVLGRLIAIAALDQESSDLGLSIGDQNLFDEIS 116

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           R P F      F+ D +   L   G+ E  +     +  +RT V G  + G    + L D
Sbjct: 117 RIPAFQDGTGAFNRDTYQYALDNIGLTEAAFEADLRRESARTLVQGAIMAGTEMPDTLRD 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
               +    RS D++ ++   +     +PS   L  +++   D +  P  K I+Y     
Sbjct: 177 TLTSYVGARRSFDWLTVSEDSIALTEVEPSEDELRAFYDANIDQFTLPRTKVITYAALRP 236

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQ 298
                +IEI    L+  +     +Y  PE R VE+LVF N+  AD A   L   G  F  
Sbjct: 237 DALVDEIEIDAAALEQLFNDRSAEYQVPERRLVERLVFANRDAADSAKAQLDINGTTFDA 296

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           L  ++G SL D+ LG  +   +   S    +F+ A+ GD    +    G  +  ++    
Sbjct: 297 LVADRGLSLQDVDLGDVTMGDL--ASAGQDVFA-AQVGDVVGPLDSDLGPALFRINGRLE 353

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
           +   S ++VK ++  ++   +A   ++   + + + LA G +++E+        ++L  +
Sbjct: 354 ARVTSLEDVKDELRAELATDRARRLIETRSEEINDMLAGGATLEELIDE---PGMELGKI 410

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
           D+      G  +AA     Q    V  +D P        L DGS   +++ E +  R   
Sbjct: 411 DWHNGSTDG--IAAYDGFRQAASAVTAEDFP----EVAFLEDGSLFAIRLDEELEPRPEP 464

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
             +    ++  W++ +  + + ++A +L       G    D     G  L +   + R  
Sbjct: 465 FADAQDKLRAAWQSKRLQDALEAEAERL------AGMLRNDEDLPEGIELTSETGLTRAA 518

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLT 595
             +       +++VF      V     +     V    T       +     +   + L 
Sbjct: 519 YIDAA-PQPLMARVFDLAEGDVAVVSDDTATVVVRLTETLPVADTPEMTALAEAMGTQLD 577

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           Q + + L ++ +   +++ +  +    + 
Sbjct: 578 QALAQALFEAFVQDAQTRAAPRIDPQALN 606


>gi|285017392|ref|YP_003375103.1| peptidylprolyl isomerase (rotamase d) protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472610|emb|CBA15115.1| probable peptidylprolyl isomerase (rotamase d) protein [Xanthomonas
           albilineans]
          Length = 661

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 113/675 (16%), Positives = 239/675 (35%), Gaps = 66/675 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R+ +  W+A   + +L +PFL   +        G++ V  V              
Sbjct: 1   MLQTLREKTSGWIATAIIGLLMIPFLFV-IDTGYLGGVGANNVAKVQAPPSWWLSAPSWW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +     S+   +K+LD L+    + 
Sbjct: 60  PVSLLWQHHEISTEQFRMGFEQARQQARQQQGEAFDPREFESIDNKRKVLDQLIDEQVVK 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              E  G+      V   IA  P F   + KF  + +   LA          +       
Sbjct: 120 LAAEQAGVVIGDASVRDYIASIPAFQN-NGKFDPERYRLALASGTPPRTPAMFQQLVRDA 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +    +     S    ++  +   E R V+  +L        A  S+A + QW++
Sbjct: 179 LQQSVIPTGLMESAFGSKQETERLMKMLGETRDVELAML-PEMPADTAPVSDAQVQQWYD 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF- 277
            +  +++ PE   I Y+  +  +           L+  YE+ K ++  P+ R    ++  
Sbjct: 238 THTSDFKQPETVSIEYVELNAAKLPASKPADEATLRKRYEEEKARFVEPDQRLASHILIS 297

Query: 278 -----PNQKEADEAFQSLKK-----GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDV 323
                 +QK A+     L       G  F  LA     + G   +   LG   K  +   
Sbjct: 298 AGKDAASQKAAEAKAVKLAAEAKRPGADFAALARANSDDPGSKNAGGDLGWVEKGVMVKP 357

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++F++ K G+    +   FGY +  +  +K     SF++V+  +A++       + 
Sbjct: 358 -FEDALFAM-KPGEIVGPVKSEFGYHVIQLREVKGGKGKSFEQVRDQLASEQLQADNEKA 415

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +     +L + +    +  E++   K V + +  +    +       A            
Sbjct: 416 LSALSGKLVDEVYKNPT--ELASAAKDVGLPVQTLGPFTRASASGIAAQPAVLRAAFSDA 473

Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
             +D  +     + L     + +++ +  P +   L +V   V       +TA+  ++KA
Sbjct: 474 LVQDGTV--SDPINLGPNHSVMIRVTQHQPEQILPLAKVHEQVIAAVHADRTAKAAAAKA 531

Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK-- 561
           + L++   K G+  + +       +     ++R    +     +    +FS P  +    
Sbjct: 532 DALLVRLRK-GETLQALAGPEKLQINPMPALSR----SPMPSPEANRTIFSAPRPVAGKP 586

Query: 562 --------CFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIA 608
                     P   G  Y +F VT    G     P +++  F   L Q+       + + 
Sbjct: 587 SFGKVALPAAPGAGGKRYALFAVTKVMPGDLSKVPAEQQTTFKQQLAQIEGAADAKAYVD 646

Query: 609 YLKSQYSVTVHDNLI 623
            ++ +Y V+V +  +
Sbjct: 647 AMRKRYKVSVQEAQL 661


>gi|149378497|ref|ZP_01896176.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola
           DG893]
 gi|149357219|gb|EDM45762.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola
           DG893]
          Length = 608

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 119/628 (18%), Positives = 253/628 (40%), Gaps = 38/628 (6%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR+ ++  +AKI + +L V   IWG+   +   SG   V +V  + +    F+   +
Sbjct: 1   LQDIRENAQGTIAKIIIGLLIVSLSIWGMDAIVGGFSGEPEVATVNGEDITEREFLRVVQ 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            E      ++    +        + + +LD L+    +    ED GLE     +   I +
Sbjct: 61  IESQRRLSEMENP-DPSLLDEDQVRQDVLDALIQQKVMTLNAEDQGLELSDADIDSLITQ 119

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P F   D  F+ D FVS +   G+   E+ +   K      +          ++  + Q
Sbjct: 120 MPQFQ-VDGTFNRDRFVSAVRNMGMGVAEFRETMRKQYVVNQIRAGISQSGVVTDENVAQ 178

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
             R   + R+     L+   V    + ++A +  ++++ K+ ++ PE    SYI+  +  
Sbjct: 179 LLRIQNQTRNFRVTTLSADAVSDQVEVTDADVEAYYDENKEAFKLPESVDASYIVLSLAA 238

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE----AFQSLKKGKKFI 297
             + IEIS+++L+  YE+   +    E R    ++  + + A+E      + L  G+ F 
Sbjct: 239 LAETIEISDEQLRDYYEQRASELMR-EERRASHILIEDGENAEETMATIQERLAGGESFA 297

Query: 298 QLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            LAEE          G    F++  + D +  D++F+L ++G+ +  +  SFG  +  + 
Sbjct: 298 ALAEEFSVDTVSAEQGGDLGFAERGVYDPAFEDALFAL-EEGEVSEPVSTSFGVHLIKLE 356

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           +++ +      E++  +  ++   +A+E+  E    L +      ++   +    +   +
Sbjct: 357 DVQKTEAPPLAELEDQLRRELAQREATERFAEVRSELADLAYAADNLAGPAEELGLEVRE 416

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS---KDHTVALPDGSYMWVQIKES 471
              +   G D         P+    L R    +D L+       + + D   +  ++ E 
Sbjct: 417 KSGITRNGGD--------APFDHAGLIRQLFSEDVLNEGFNTELIDVGDNMSVVARVGEY 468

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
             A+ + LE+V  +++      KT E ++ +A+ ++ +  + GK+  ++G      L   
Sbjct: 469 QEAQQQPLEDVAEEIRAALTRQKTREALNERADAIIADL-ESGKDIEELG------LGEW 521

Query: 532 NQINRMDNENKFFGYDGISQVFS----GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-- 585
                    N   G   +SQVFS    G    V    + +G + +V  +     G V   
Sbjct: 522 QSYEEQPRSNPALGGAVMSQVFSLQRPGDGGNVYGSVVSDGSASIVA-LDAVNEGEVNRD 580

Query: 586 --EKDKFISYLTQMMNKDLLDSVIAYLK 611
             E  +   +L  +  +    +   +L+
Sbjct: 581 GGEFRQLRGFLASLEGQREYQAYQQFLR 608


>gi|239908536|ref|YP_002955278.1| peptidyl-prolyl cis-trans isomerase [Desulfovibrio magneticus RS-1]
 gi|239798403|dbj|BAH77392.1| peptidyl-prolyl cis-trans isomerase [Desulfovibrio magneticus RS-1]
          Length = 650

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 113/648 (17%), Positives = 253/648 (39%), Gaps = 40/648 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK +++W  KI   ++ + F+ WG+ +  F+   ++ + +V  Q +    +   +
Sbjct: 1   MLDPMRKYAQSWGIKIVFGLIIIVFVFWGVGN--FNGDRATVLATVNGQPILIKDYEKQY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ L ++  K    V  +  +  G   ++  N+V+   L+   + +G+    G +  EIA
Sbjct: 59  QENLRLVKNK-NPNVTDKDLQDGGFRWQVFTNMVTTKLLEDQAKTLGIAVTAGELRSEIA 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F  +  +F    + + L    ++  E+   + + L    +        + +     
Sbjct: 118 KIPAFQNESKQFDAKRYENLLKANDVSPGEFEADFRQQLLLEKLAAFVGLPAQVAEAEAR 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               F  E   + YI             S+  + +++E  KD +  P   +I ++ F   
Sbjct: 178 SIFDFMREQAIIKYIPFAATDFTKGVTISDEQIAKYYEARKDEFATPAQVKIDFVEFTPK 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288
              K  EI++ +++A+++ N++KY  PE   V  ++               +K       
Sbjct: 238 AMAKPAEITDTDIEADFKANQKKYERPEQVRVRHILMMLPPDAPQEVVDAAEKRLKAMAD 297

Query: 289 SLKKGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
            ++KGK F  L  +         G+  + +  GS  KE+ P     +  F+L KK + + 
Sbjct: 298 DVRKGKDFATLIPKDPANADGIIGEDWAWLPKGSLPKEFAP---FEEKAFTL-KKDEVSD 353

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
            +  S G  +      + S   +  EVK +I   +   +A++K+ +    ++E L+ G  
Sbjct: 354 PVRTSLGLHLIQGGEKQASGQRALAEVKDEIRADLAEQRAADKLTKSLDAIQEKLSSGEP 413

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
           ++     EK+       V  +    K    A +   E  +  +F      + D  ++  D
Sbjct: 414 LEAAVAAEKLA------VKTSAFFAKDAPPAELGLSEPAVEAIFALKKGQTADAPLSTQD 467

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
           G ++ V+  E        L+ V + +K      +  +   +KA +   +  +     + +
Sbjct: 468 G-FVVVRAAEVKEPGFEPLDAVKSVIKGRLTDEEAMKLAKAKAEE-TAKAMETEDGLKKV 525

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSYVVFKVTNS 579
             +    + T+    R            ++Q  F                +YVV  +  +
Sbjct: 526 LADYKDKIQTSAPFTRQGFIPGLGMSPVLAQTAFEAKGPGWFKTAFGVSGAYVVAGLDKT 585

Query: 580 KVGPVQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
               +     EK+++++ LTQ    +L  + +  L+    V + ++ I
Sbjct: 586 VPADISLWDKEKERWVATLTQSKQTELFRAYLQTLQEAARVEIVNDAI 633


>gi|71278179|ref|YP_270447.1| peptidyl-prolyl cis-trans isomerase D [Colwellia psychrerythraea
           34H]
 gi|71143919|gb|AAZ24392.1| peptidyl-prolyl cis-trans isomerase D [Colwellia psychrerythraea
           34H]
          Length = 638

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 101/642 (15%), Positives = 243/642 (37%), Gaps = 34/642 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+   AKI L ++ + F + G+     SV  S  V +V  + +   +F  ++
Sbjct: 1   MLEDIREKSQGLTAKIILGLIILTFAVAGVGSYTNSVDTS--VATVNGEPISQQAFNKAY 58

Query: 61  KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + + G ++Q+ G + ++   +        + +LDNL++   +DQ  E + +     R+  
Sbjct: 59  QAQRGRMAQQFGEMFDTLSNDANYMANFRQGVLDNLINEKLIDQNSEALAIRVSDLRLKE 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGI-NEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            I + P F   D  F ++ +++ + + G     ++ D+    ++R  +    +       
Sbjct: 119 TIRKMPEFQ-VDGTFDNNRYLAIINQAGFFQSSDFRDYLRVEMTRRQLSQALIATEFNLP 177

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
                      + R + +  ++     A  + ++  +  ++   +  ++  E  ++ YI 
Sbjct: 178 YQEKLQLALQNQTRDIRFATISAEQFKATVELTDEEVNSYYLANQARFQNKEQVKVDYIS 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF----------PNQKEADEA 286
            +V    K I ++++E+   Y++N   +     R +  ++             + +A   
Sbjct: 238 LNVANIAKGINVTDEEVAKYYQENSASFTESAQRRISHILIEFNDGNADDEAAKIQAQAV 297

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
              L++G+ F  LA+E          G    + +  + + +  ++  +L   GD + ++ 
Sbjct: 298 LARLEQGEDFAVLAKEVSNDTFSGENGGDLEWLEPGVMEETFDEAALALVNVGDTSQLVK 357

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMD 402
            SFGY +  +++ K     +  +V+ ++ +++   +A EK     + +         S++
Sbjct: 358 TSFGYHVLKLTDYKEEVVKALIDVQTELRSKLSNDQAQEKFFTLQQEMARISFEFPDSLE 417

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
           + +    +     P +   G      +  A+    +  F      D ++ D  + + D  
Sbjct: 418 DAAAEVNVTIQTSPWLLRGGNSAPFDQAKAV----EAAFSDIVLQDNMNSD-LIEVNDDV 472

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + +++     A  + L EV   +K      K  E+     + L+ ++   G +      
Sbjct: 473 ALVLRLNTFQEANVKPLSEVEAQIKDIIVNQKATEKAQQTVDSLLADF-NAGTDISTQLT 531

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTN 578
            L  S ++  ++ R   E            F  P  +           +     + +VT 
Sbjct: 532 ALNTSFVSKEKVARYSPE---IDQSISRAAFVLPHPVSGVISASTVALSNGDLALIEVTA 588

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
             V  V          T  + +    S +  LK    +T   
Sbjct: 589 VDVNDVAATPNLAQQQTSQLAQSAYQSFVNSLKVGAKITRKQ 630


>gi|78066690|ref|YP_369459.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
 gi|77967435|gb|ABB08815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
          Length = 644

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 106/659 (16%), Positives = 243/659 (36%), Gaps = 45/659 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V +V   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D     + +   L+ +G+  ++Y +     LS   +    V        
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L  +      + R V  +VL      A   P++A L  +++ +K ++  PE   I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLAAYYDAHKQSFATPETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + ++ +++  Y+ N   + +     V  +                + +A++
Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKTAAKTKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +K     F Q+A++  +          LG  ++       +  D+ F+L K+GD +
Sbjct: 300 LLADVKAHPDQFAQVAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGDVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+    G+ I   + +KP+    F +VK  IA +++   AS+   ++ +     +    
Sbjct: 359 GVVQSDLGFHILKATEVKPAAVKPFADVKDQIAAELKQQYASKAFTDNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            ++   + + K+      +       +        P   + L  VF  D   S+++T  +
Sbjct: 419 KTLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNP---KFLAAVFANDSVKSQNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ +  PA    L+ +   V++     + AE         + E  K  K+
Sbjct: 476 DIGNNTLISARVTDYKPAAVPALDAIKDVVRQKVVAEQAAELAKKDGVAKLAELQKS-KS 534

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                     S   +  +              +S V+    + +  +   +     Y ++
Sbjct: 535 ADGFAAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           +V     G   +  +  +   QM   D     ++ +A L+ +  V ++ +   +  DG+
Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKLYGSTAGQSQDGD 643


>gi|327480677|gb|AEA83987.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri DSM
           4166]
          Length = 618

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 101/640 (15%), Positives = 237/640 (37%), Gaps = 47/640 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+ V   + G      + S +     V  +++       + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIVVLLALTGFDAIFNAASNAQNAAEVNGEEISRYDLDQAM 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   ++Q++G   +        L    L +L+    L Q  +          +   I 
Sbjct: 61  NMQRRQLAQQLGQDFDPSLLDDRLLRDAALGSLIDRMLLLQAAKGANFAFSREALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D  F+   F   + + G +  ++     + +    +     G    ++  + 
Sbjct: 121 QTPEFQ-VDGAFNPARFDQVIQQMGYSRLQFRQLLEQEMLIGQLRAGISGTGFVTDQQVQ 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R    + +  +H     + S+  + +++E   D +R PE   + Y+     
Sbjct: 180 NFARLEMQTRDFATLTVPAQHEA--IEVSDDQINEFYEANADRFRTPEQVVVEYVELKKE 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLK 291
               ++E S++ELQ  Y+K        E R    ++            + + DE    +K
Sbjct: 238 SFFDQVEASDEELQELYQKQIANL--AEQRRAAHILIETGGELSDDEAKAKIDEIAARVK 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            G+ F  +A+E  +     + G    F+   + D +  D++++L  +G+ +  +   FG+
Sbjct: 296 NGEDFATVAKEVSQDPGSANEGGDLGFAGPGVYDPAFEDALYAL-NEGEVSAPVKSEFGW 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I  +  ++     SF+ +K ++  +++  +  ++  E  K+LE+     + + + ++  
Sbjct: 355 HIIKLLGVQSPEVPSFESMKPELVRELKAQQVEQRFVETSKQLEDAAFEASDLAQPAQEL 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
            ++          G +        I    Q++   F ++     +    + L   + + +
Sbjct: 415 GLMVQTTEAFGREGGE-------GITANRQVIQAAFSEEVLVDGANSSVIELDPDTAVVI 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++KE +      L +V  D+ +  +    AE   ++  QL+ E  +EGK           
Sbjct: 468 RVKEHLKPAAIPLADVRDDIVQQLQRKLAAETARTQGEQLLAEL-REGKQPE-------- 518

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581
                  +       +      +  VF  P    +  P  +G++     YVV ++     
Sbjct: 519 --GQWQAVEAATRSQEGVAPALLQAVFRMPRPEQQDKPSYSGVALNNGDYVVVRLNGVNE 576

Query: 582 GPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                  +EK     +L   M +    +    L+++  + 
Sbjct: 577 ADATLSDEEKLNIRRFLASRMGQQDFAAFRQKLQAEAKIE 616


>gi|170717232|ref|YP_001784350.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus
           2336]
 gi|168825361|gb|ACA30732.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus
           2336]
          Length = 618

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 120/639 (18%), Positives = 262/639 (41%), Gaps = 41/639 (6%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E +  AS   V+KI   ++ V F++ G++  +F +   ++V  V  +++    F+  + 
Sbjct: 3   MEKLNNASSGIVSKIIFGLIGVSFVLSGVAGYMF-IRTDTSVAKVNGEEISQQVFLQQYN 61

Query: 62  QELGMISQKIGFVVNSERARSVG--LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            E   +S+ +G    +E A S    L  ++LD L++   L Q+ +++ L     +V   I
Sbjct: 62  NEYQRLSENLGAKF-AEVADSAAKHLRHEVLDRLINQELLRQYAQELKLGISDKQVSLAI 120

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
             SP+F  +  KF + ++   LA  GI+   Y  +  + L    +            + L
Sbjct: 121 VNSPMFQNE-GKFDNKIYQQILASSGISSDTYAAYVREGLVLEQLQQGIANSDFQVPIQL 179

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           ++  + +F+ R V   VL+          +   + Q+++  K N+  PE  ++ Y+    
Sbjct: 180 NELAKNFFQRRDVRLAVLSLDDEMQKQTVTEQEIEQYYQANKANFAVPERVKVQYLDLTR 239

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
              ++K++IS+ E+   Y+ NK +Y +   + +  +  P ++EA   + +L+ G+ F  L
Sbjct: 240 AIADQKVKISDIEIAQYYQDNKAQYIT---KHLAHIQLPTEQEAQSVYANLQNGEDFSAL 296

Query: 300 AEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A+        +     L       +P ++   ++ +L   G+++  +     Y I  V +
Sbjct: 297 AKLYSMDTLSAQKGGDLDWVVNGMMP-LAFESAV-TLLNVGEYSQPVKVDNAYHIIKVLD 354

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSID 414
           +K   T    +VK++IA ++R    +       K++ E       S++E +   K+  ++
Sbjct: 355 MK---TRELNDVKEEIATKLRNDLVTNAFYSLEKQMNEKAFENPQSLEEAA---KVAGLE 408

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESI 472
           +   D+  +     E+        +   +F  D          + + D   + +++ +  
Sbjct: 409 IKETDYFSRQDLPPELNY----SHIATAIFNSDLMQGGINSEAINVGDQHSVLLRVVDYK 464

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           P   R L E   D++   K  K    + + A ++V E +       D             
Sbjct: 465 PEGIRTLAEATADIETYLKRQKAETTLFNMAEKIVAEMN----TMTDFKLPSYIHFSEKE 520

Query: 533 QINRMDNENKFFGYDGISQVFSGP---VEMVKCFPIENGLSYVVF----KVTNSKVGPVQ 585
                D +NK      +  +FS              +N    +VF     V +S++ P +
Sbjct: 521 TWVYRDVDNKDPVLGKV--IFSMKKPDPGKTTISVAKNMFGDIVFVELMNVEDSQLTP-E 577

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +K  F   + ++    L + +I  L+ + S+ ++   I 
Sbjct: 578 QKQLFGVQIAKIKQFSLSNLLIQALREKASIEINTKFIN 616


>gi|152995753|ref|YP_001340588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
           MWYL1]
 gi|150836677|gb|ABR70653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
           MWYL1]
          Length = 607

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 117/636 (18%), Positives = 236/636 (37%), Gaps = 49/636 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+  V KI +  + V F ++G+   + S + S TV  V    +  +  +   
Sbjct: 1   MLQDIRDKSQGIVVKIIVGFIVVTFALFGVDALVTSFNSSDTVAEVDGVDITRTQMLQGA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   +   +G  VN        L ++ LD LV    L    + +GL     +V   + 
Sbjct: 61  ETQRRQLISMMGGQVNPALLEDNLLQRRALDELVQRVVLANQAKGLGLGVSDAQVNAYLL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++  F   + +F  + +++ +   G     + +   + +          G        +D
Sbjct: 121 QAEQFQ-TNGQFDQNKYLNFIRSLGFTPLAFKERIKQDVLIQQPRNAIAGSEFVLPYQVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              +   + R+ DY+  +          S+  L  ++E  K+N++ PE  +++Y++    
Sbjct: 180 SVSKLQSQERTYDYVSFSLADESENTSVSDDELKAYYEANKENFKTPEQVKVNYVVISSS 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEADEAFQSLKK 292
           +   K++I++ ELQ  Y+ +       E R+   ++           +K  +E    LK 
Sbjct: 240 DFYGKVKITDAELQDAYQASISVLAQ-EERSASHILIETSDRSDDEAKKRLEEVEAKLKA 298

Query: 293 GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G KF  LA +    +       +LG   K  I   +  D++FS+ KKG+   V  G +GY
Sbjct: 299 GAKFADLAAKYSDDIGSNKDGGNLGYVEKG-IMGSAFDDTLFSM-KKGEVKSV-KGQYGY 355

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  + +I      SF   K+++  ++R  KA + +   ++ + +       +D I++  
Sbjct: 356 HLIKLDDISKPDVPSFASKKEELLQKLREDKARDALLTAHEDITDLAYASDKLDAIAKEY 415

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
               +D+    + G+D    E+ + P      F V   +D  + +  + L D   + + +
Sbjct: 416 ---GVDVLQSAYFGRDGGSDEITSSPAVIAAAFGVSVLEDGQNSN-LIELGDDQVVVLHL 471

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
            +  P   +  EE    V       K  E + +KA +                       
Sbjct: 472 NDHKPEAFQSYEETKEQVASIVVQNKAVESLRAKAEK--------------AKSASNTKW 517

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVG--- 582
            +     R  +E            FS P      V      +     + ++     G   
Sbjct: 518 TSVKDAKRGQDEMTSL-------AFSLPHPEGKPVIEVKGLSNGDLALIRLNKVDAGNAT 570

Query: 583 -PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            P  +K  +  YL Q            YLK++  + 
Sbjct: 571 VPDDQKLAYERYLNQTQVTLSTQGQQDYLKNKAKIE 606


>gi|260912811|ref|ZP_05919297.1| peptidyl-prolyl cis-trans isomerase D [Pasteurella dagmatis ATCC
           43325]
 gi|260633189|gb|EEX51354.1| peptidyl-prolyl cis-trans isomerase D [Pasteurella dagmatis ATCC
           43325]
          Length = 625

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 119/636 (18%), Positives = 260/636 (40%), Gaps = 27/636 (4%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + +WV+K+ L ++ V F++ G++  +F+    ++V  V  +++   +F   
Sbjct: 1   MLIEKLHSITNSWVSKLVLGLIAVAFVLSGITGYVFTNV-DTSVAKVNGEEITQQAFHQR 59

Query: 60  WKQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E   ++Q++G    +    +     L + +L++LV+   L Q+  D+ L     R+ 
Sbjct: 60  YESEFERLNQQLGSQFAAVAGSKGFVSNLRQSVLNSLVNQELLRQYANDLKLAVSDERIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            EI  S LF   D KF ++++  RL   G+N   Y  +  + L    +            
Sbjct: 120 QEIVTSELFQ-TDGKFDNNLYQRRLQLNGMNADMYAAYVGEALRLDQLQSGLAESAFSVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
              DQ    +F+ R +     + +   A    +   +  +++  K  +  PE  ++ YI 
Sbjct: 179 AQQDQLTELFFQTRKLRLAKFDLKDEIAQQQVTEEEIKAYYDANKSAFSVPELAKVQYIE 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
               + EK I++++ E+   Y+ NK  Y S   + +  +    +++A E + +L+ G  F
Sbjct: 239 LTRADVEKNIQVTDVEIAQYYQDNKALYVSQGQQRISHIELATEQDAQEVYAALQDGANF 298

Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LA  +        +   L   S   +P  +  D+  +L + G F+  +     Y I  
Sbjct: 299 AGLASARSLDKISAANGGDLSWLSAGGLPK-AFEDAANAL-EVGKFSQPVKVDSHYHIIL 356

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V++ K +  +    VK  IA+Q+R    + +     K++ E      + + +++  ++  
Sbjct: 357 VTDRKSAEALPLSVVKTQIADQIRQNLVNNQYFSVEKQMAEKAFE--NPESLAKAAEVAG 414

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           +++   DF   +    E+        ++  +F  D          + + D   + V++ +
Sbjct: 415 LEIKETDFFSANDMPMELNY----PNVVSAIFHSDISQGGVNSEPMNVGDQHSIVVRVLK 470

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           + P   R LEE   D++   K  K    V +  +++    ++  K         G +   
Sbjct: 471 NTPEGVRSLEEAKADIETLLKRQKAESAVLAAVSEIAKNLTQNPKQ----ELPKGVNFAK 526

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKD 588
                   N ++       +  F       +     NG   V+ ++   + G    +++ 
Sbjct: 527 EESWVFAQNSDQTLANAVFAMPFKAGETTYQAAKSGNG-EIVLIQLNAVEQGSLTEEQRK 585

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            F   + Q    +L +S+I  L+SQ  + V+D   +
Sbjct: 586 AFDLQVEQTREFELQNSLIQALRSQAKIEVNDKFYE 621


>gi|146282422|ref|YP_001172575.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri A1501]
 gi|145570627|gb|ABP79733.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri A1501]
          Length = 618

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 101/640 (15%), Positives = 236/640 (36%), Gaps = 47/640 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+ V   + G      + S +     V  +++       + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIVVLLALTGFDAIFNAASNAQNAAEVNGEEISRYDLDQAM 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   ++Q++G   +        L    L +L+    L Q  +          +   I 
Sbjct: 61  NMQRRQLAQQLGQDFDPSLLDDRLLRDAALGSLIDRMLLLQAAKGANFAFSREALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D  F+   F   + + G +  ++     + +    +     G    ++  + 
Sbjct: 121 QTPEFQ-VDGAFNPARFDQVIQQMGYSRLQFRQLLEQEMLIGQLRAGISGTGFVTDQQVQ 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R    + +  +H     + S+  + +++E   D +R PE   + Y+     
Sbjct: 180 NFARLEMQTRDFATLTVPAQHEA--IEVSDEQINEFYEANADRFRTPEQVVVEYVELKKE 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLK 291
               ++E S++ELQ  Y+K        E R    ++            + + DE    +K
Sbjct: 238 SFFDQVEASDEELQELYQKQIANL--AEQRRAAHILIETGGELSDDEAKAKIDEIAARVK 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            G+ F  +A+E  +     + G    F+   + D +  D++++L  +G+ +  +   FG+
Sbjct: 296 NGEDFATVAKEVSQDPGSANEGGDLGFAGPGVYDPAFEDALYAL-NEGEVSAPVKSEFGW 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I  +  ++     SF+ +K ++  +++  +  ++  E  K+LE+     + + + ++  
Sbjct: 355 HIIKLLGVQSPEVPSFESMKPELVRELKAQQVEQRFVETSKQLEDAAFEASDLAQPAQEL 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
            ++          G +        I    Q++   F ++     +    + L   + + +
Sbjct: 415 GLMVQTTEAFGREGGE-------GITANRQVIQAAFSEEVLVDGANSSVIELDPDTAVVI 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++KE +      L +V  D+ +  +    AE   ++  QL+ E  +        GK    
Sbjct: 468 RVKEHLKPAAIPLADVRDDIVQQLQRKLAAETARTQGEQLLAELRE--------GKQPKG 519

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581
                    R     +      +  VF  P    +  P  +G++     YVV ++     
Sbjct: 520 QWQAVEAATRS---QEGVAPALLQAVFRMPRPEQQDKPSYSGVALNNGDYVVVRLNGVNE 576

Query: 582 GPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                  +EK     +L   M +    +    L+++  + 
Sbjct: 577 ADAALSDEEKLNIRRFLASRMGQQDFAAFRQKLQAEAKIE 616


>gi|303326078|ref|ZP_07356521.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863994|gb|EFL86925.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           sp. 3_1_syn3]
          Length = 640

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 115/652 (17%), Positives = 239/652 (36%), Gaps = 40/652 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++++  K+   V+ + F+ WG+       + ++ V  V    +    F  ++
Sbjct: 1   MLDYIRSNAQSFGVKVAFGVIILVFVFWGVGS-FNDRNSANVVAIVNGDPILVQQFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +     I +     V  E+ +   L +++L +L+    L Q     G+      +   + 
Sbjct: 60  RNAEESILRNNPG-VTREQLKEQHLGRQVLRDLIQQTLLAQEAARAGVSVTPLELRQAVG 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           R   F     +F  + +   LA + I+  +Y    +  L R  +  +    +        
Sbjct: 119 RIKSFQDAQGRFDPEAYTRVLAAQRISPAQYEKDMSDQLLREKIFTLVTAPVWVDPDEAQ 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               F  E R VDY+ +  ++       ++  +T +++ +K ++  P    ++Y+     
Sbjct: 179 NRYNFLREKRVVDYLFIPAKNFSGEVKVTDQDVTAYYDAHKKDFAIPPKVDVAYVSVTPG 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--------NQKEADE----AFQ 288
              K   IS  + Q  YE NK ++  P       ++ P         +K+A E       
Sbjct: 239 GLVKPESISEADAQKWYEANKSRFEEPAQVKAAHILVPLAENAPADAEKKAREEVAKIQA 298

Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            LK GK F  +A+    S +      LG  +          D+ F+L K G  +  +   
Sbjct: 299 ELKSGKDFAAVADAHNGSNAAGPGGELGWITPGKTVKP-FEDAAFAL-KAGQVSEPVRSP 356

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           FG  I  V + KP    +F++  +++   M   + ++K+ +    L E   LG  + E +
Sbjct: 357 FGLHIIKVEDKKPGGLKTFKDAAREVRQAMAQEQGADKLHDVLDSLIEDNILGKPLAESA 416

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
            R  + +      + +G   + +    +         +         D  +   D  Y+ 
Sbjct: 417 ARFGLKA------EQSGLLSQSELEQKLGITPVGASALIATATGAPVDTALEAGD-KYLV 469

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
            +I ++ PA  + L+ V + +       K  +     A     E  K+G   + +  +LG
Sbjct: 470 ARIIKAEPASTQPLDAVKSAIVAKLTAEKALKAAVESAAARRKEL-KDGPLPQPLKASLG 528

Query: 526 ASLLTTNQINRMDNENKFFGYDGIS-QVFSGPVEM-----VKCFPIENGLSYVVFKVTNS 579
               T   ++R  N   F   + ++  VF+                  G   ++ +V   
Sbjct: 529 IK--TAPAMDRGGNLADFNPDEALAEAVFTAKPGTWLPSAYAVDGKSEGPGALLCRVDAV 586

Query: 580 KVGPVQEKDKFISYLTQMMNKD----LLDSVIAYLKSQYSVTV-HDNLIQRY 626
                QE +     +   + ++    L    I  L S+  V V + +++ R 
Sbjct: 587 LPPDPQEWNTVRDLMANGVARERVDGLYQVFIQNLASKAKVEVLNTDIVDRV 638


>gi|158520285|ref|YP_001528155.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus
           oleovorans Hxd3]
 gi|158509111|gb|ABW66078.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus
           oleovorans Hxd3]
          Length = 631

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 117/646 (18%), Positives = 255/646 (39%), Gaps = 37/646 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ + + + K  L ++ + F+  G+ +  F      T  +V  + V    F  ++
Sbjct: 1   MLQFMRQKASSIIIKGVLSLVILAFIFLGIGN--FREQQEVTAATVNEEIVTGREFQYTY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ L    Q+ G  +N +  + + L ++ ++ L+S   + Q  + +GL      +   I+
Sbjct: 59  QRLLDTYRQQFGGALNDDLLKMLNLKEQAMNQLISEKIILQQADKLGLNVSDSELAATIS 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + +F    +   L    +    +     + L    +  +    +  S+    
Sbjct: 119 SIPAFQN-NGRFDKTRYNRLLQSNRMTAAAFEQSQKQGLLVDKLRTLITDSVLVSDNEAR 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q   +      +   V          DP+ A +  ++E++KD Y+ PE ++I+Y+     
Sbjct: 178 QWFDWENARVKITAAVF-AAEGRTDVDPAEAAVAAYYEEHKDQYKTPEKRKITYVRVAPA 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS----------- 289
               +++++ +E+   Y+ N++ Y++ E      ++   +++ADEA              
Sbjct: 237 RYLSEVKVTEEEIADFYQANQDFYWNEETVEARHILISLEQDADEARVEEARQKAADIYV 296

Query: 290 --LKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
                GK F + A +  +  S      LG+F++E +     ++  FS+A  G+ +  +  
Sbjct: 297 MVTDGGKDFAETARQYSEGPSAGEGGYLGAFTREDMV-APFSEKAFSMA-PGEISEPVRS 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ I  V  +  +FT    EV+ DI  Q+   KA E   E+   L +      S+++ 
Sbjct: 355 QFGWHIIKVEKVNAAFTTPLDEVRADIEKQLLDQKAGEYAYEEALTLFDMALDTDSVEQA 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           +    + ++    +       +   +A +     ++ + F  D    +   V     ++ 
Sbjct: 415 AASRNLTAVTTDAI------TQNDTLADVEAGRTMVRQAF--DFVEKEISDVITEGNTHF 466

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
             Q+ E +PA    LE V   V +D +     E   ++A + VLE  K G+         
Sbjct: 467 LFQVTEVMPAAVPPLENVQARVIEDLREQMRKEAAQAEA-ESVLEKVKAGQPLEAACAGT 525

Query: 525 GASLLTTNQINRMDNENKFFGYDGIS-QVFS-GPVEMVKCFPIENGLSYVVFKVTNSKVG 582
            A ++ T    R            +S   F     + V    +E    Y V  + + K  
Sbjct: 526 QAEIVATGFFGRTGAVPDIGNEPALSRAAFDLTKNQPVAPNVVEGRTGYYVVVLNDQKAP 585

Query: 583 PVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
              E    +D  +  LT     ++  S +  ++ +  +T+ +  ++
Sbjct: 586 EASEFEEKRDAVVKRLTAQKKNEVFMSWLKTMRQESDITIDEAFLR 631


>gi|83644983|ref|YP_433418.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
 gi|83633026|gb|ABC28993.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
          Length = 628

 Score =  366 bits (939), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 117/638 (18%), Positives = 239/638 (37%), Gaps = 33/638 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++  +AK+ + ++ + F  +G+   +  +SG   V SV  + +  S F   +
Sbjct: 1   MLQNIRDNAQGVIAKVIVGLIVMTFAFFGVESIVGGLSGEPEVASVNGEPITKSQFERKF 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++        +G   +  +     L K  LD  ++     Q   + G       +   I 
Sbjct: 61  ERNRLQAIAGMGENYDPSKIDENKLRKTTLDEFITREVQLQAAREAGFAVSDATINNFIT 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P+   KD K+ ++ F+  L R G+   E+    +  L    +              L+
Sbjct: 121 QWPMAQ-KDGKYDNNQFMEALRRIGMRPMEFRKELSDELLVGQLQSGIAQTSFVIGEELN 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  R   + RS  Y  LN   V    + S+A   +++   KD +  PE   ++YI     
Sbjct: 180 ELLRMERQTRSFSYYRLNAEDVAKDIEISDAEAEEYYNSNKDEFILPERIIVNYIELTRD 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---------ADEAFQSLK 291
               + E+S++E+   YE+ K+++   E R    ++     +         A E  Q LK
Sbjct: 240 ALVGRAEVSDEEVSERYEQEKKEFLPSEQRRASHILIETSDDVSDEQALAKAQEVEQKLK 299

Query: 292 KGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G  F  LA+E    L        LG   K    +    + +FS+   GD +  +   +G
Sbjct: 300 DGGDFAALAKEFSSDLGSANDGGDLGYAQKGAFVEP-FEEKLFSM-NVGDISEPVKTEYG 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y I  ++++K     S +E K  I  +++  KA     E   +L++       +   +  
Sbjct: 358 YHIIKLNDVKAVEMPSLEESKDRIVKELQEQKADSLFVEVNAKLKDITYTADDLAGPAGE 417

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
             +           G    G+ + + P   Q  F     +D  +    + L     + ++
Sbjct: 418 LGLTVQTSEPFSREG----GQGIFSGPQVVQEAFSADVIEDGHN-SQVIDLGREGSLVLR 472

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
            KE +P+  ++  EV   +K+     K  + +++K+ ++V +     K+      + GA 
Sbjct: 473 KKELLPSVPQQFAEVKEAIKQKLAVQKAKDTLAAKSEEMVAQL----KSGDLAPVSKGAD 528

Query: 528 LLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIEN-----GLSYVVFKVTNSKV 581
              T  +   D      G   I++  F  P        IE      G + +V        
Sbjct: 529 GQQTGWVELNDARRSQAGAADIARLAFKLPKPEEGKPVIEKFETNFGYAVIVLNEVKDNT 588

Query: 582 GPVQEKDK--FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             + E ++  + +++     +   +     ++    + 
Sbjct: 589 EDLSEAEQKTYRTFMASRNGQREYNDYNEKIQDAAEIE 626


>gi|325927445|ref|ZP_08188692.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans
           91-118]
 gi|325542195|gb|EGD13690.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans
           91-118]
          Length = 656

 Score =  366 bits (939), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 110/672 (16%), Positives = 241/672 (35%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L +PFL   + ++     G++ V  V              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +     S     ++LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   IA  P F   D KFS D + + LA+        ++       
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+  +L        A  S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLKLMGETRDVELAMLPPPA-ADTAPVSDAQIKQWYD 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +              L+  YE  K ++  PE R    ++  
Sbjct: 238 GHAQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILIS 297

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
                        K A  A ++ + G  F  LA+   +          LG   K  +   
Sbjct: 298 AGADAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++FS+ K G+    I   FGY +  +  +K     SF++V+  +A +     A + 
Sbjct: 358 -FEDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + +    T+++  +++  +    L     +       + + +     +L  
Sbjct: 416 FADVSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 468

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V    +  + AE+V+
Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADR-AEKVA 527

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           + A   +L   ++G+  + +  +    +     + R               +FS P    
Sbjct: 528 AAAADALLARLQKGETLQALADSEKLQVQPIPVLPRT---APIPTPAANRAIFSAPRPTE 584

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
               +     +G  + VF ++ +  G     P +++      L+Q+   +   + +  ++
Sbjct: 585 GKPSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMR 644

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 645 KRYKIQIEEAQL 656


>gi|254463425|ref|ZP_05076841.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacterales
           bacterium HTCC2083]
 gi|206680014|gb|EDZ44501.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 615

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 119/624 (19%), Positives = 256/624 (41%), Gaps = 27/624 (4%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
            A       I L +L V    +G ++         +V +VG + +    +  + +++L  
Sbjct: 6   NALSKTFIWILLALLIVGLAGFGATNL---GGNIRSVGAVGDKTISVELYSRTLQEDLRA 62

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           IS + G  +    A+++G+D++ L  +++   LD    ++GL     ++  +I     F 
Sbjct: 63  ISAQAGQNIPFSTAQALGVDRQALARVITTRALDHETAELGLSVGDAQLQQQILSMSAFQ 122

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
           G + +F  + +   L   G++E E+ +   +  +RT V G  + G    +   +    + 
Sbjct: 123 GINGQFDREAYRFTLENAGLSEAEFEETLREEAARTLVQGAILSGNTVPDTYANTLVAYI 182

Query: 187 FENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
            E R+     L    +   +A+P+ A L  ++++  D Y  PE K+I+Y L         
Sbjct: 183 GERRNATVARLKAEDLATPVAEPTEAQLQTYYDENIDAYTLPETKQITYALLSPDMIADT 242

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQG 304
           +E+    LQ  Y++ + ++  PE R +E+LV+ N   A  A   L+  G  F  L E++G
Sbjct: 243 VEVDEAMLQTAYDERESEFNKPERRLIERLVYGNDDSASAAKAQLEAGGTTFETLVEDRG 302

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            +L+DI LG   +  +   +  +SIF+ A+ GD    +    G  +  ++ I  +   SF
Sbjct: 303 LALADIDLGDLDQGALG--AAGESIFA-AETGDVVGPLQSDLGPALFRINGILAAQETSF 359

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
           ++ +  + +++   +A   V+     +++ LA G +++++++   +V  ++         
Sbjct: 360 EDARAQLRDELAADRARRVVEAQINDIDDLLAGGATLEDLAKETDMVLGNID-----WSS 414

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
             G  +AA     +    +   D P        L DG    +++ E    R + L ++  
Sbjct: 415 EAGDGIAAYEVFREGAQAITVDDFPK----IEVLEDGGIFAMRLDEVHAPRPQPLAKITE 470

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
            V   W+T  T E + ++A  L+ + + E  +F D+         T  ++ R        
Sbjct: 471 RVSVGWRTQATLEALRAEAEALLSQITAE-SDFADV----DLEADTLTEVTRTGFVADI- 524

Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM----MNK 600
               I  +F               +  V      +      +     + L       + +
Sbjct: 525 PPAAILALFEAEKGASVVVDDVTDVLIVRLDDVLAADEDSDDIQALRTQLNNQAATAVAQ 584

Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQ 624
           DL ++    ++ +  + +  N + 
Sbjct: 585 DLFEAYATEIQQRAGIQLDQNALN 608


>gi|70731342|ref|YP_261083.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens
           Pf-5]
 gi|68345641|gb|AAY93247.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens
           Pf-5]
          Length = 623

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 101/639 (15%), Positives = 229/639 (35%), Gaps = 40/639 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+     + G      + + +     V  +++  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIVALLALTGFDAIFKATTHNQDAAKVNGEEITQNELSQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   ++       L +  L  L+    L Q  +D       G +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDASLLDEKMLREAALKGLIDRKLLLQGAQDSKFAFSEGALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KFS + F   + + G    ++    T+ +    V     G    ++  + 
Sbjct: 121 QTPEFQ-VDGKFSPERFDQVIRQLGYTRLQFRQMLTQEMLIGQVRAGLAGSGFVTDAQVL 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  L  +  PA    ++  +  +++++   +  P+   I YI     
Sbjct: 180 AFARLEKQTR--DFASLTIKADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYIELKKA 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               ++ + +++LQA Y+K        E R    ++            + + +E    L 
Sbjct: 238 AFFDQVSVKDEDLQALYQKEIANLS--EQRRAAHILIEVNDKVNEAQAKAKIEEIQARLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  +     S G    F+   + D +   ++++L K    +  +   FG+
Sbjct: 296 KGESFEALAKEFSQDPGSASNGGDLGFAGPGVYDPTFEKALYALNKD-QVSAPVRTGFGF 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     SF  +K  +   ++  +  ++  E  K+LE+     + + + ++  
Sbjct: 355 HLIKLLGVEAPEVPSFASLKGKLTRDLKTQQVEQRFVEATKQLEDSSFEASDLAQPAQDL 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
           K+           G D        I     ++   F  +  D  +    + L   + + +
Sbjct: 415 KLTVHTSAPFGREGGD-------GIAANRAVIQAAFSTEVLDEGANSTAIELDPETVVVL 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           + KE        LE V + ++        +    +KA +L+    ++GK       N   
Sbjct: 468 RAKEHRKPEQLPLESVASAIRTQLAKEHASAAAKTKAEELIASL-RDGKT----ALNKPV 522

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSG--------PVEMVKCFPIENGLSYVVFKVTN 578
                   + +    +      +  +F          P       P  N L   +  V  
Sbjct: 523 DGQDWKVAHAVTRGQEGIDPAVLQALFRMTKPESKDKPTFTSVTLPNGNLLVLQLNGVNE 582

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +     +EK ++  +L   + +    +    L++Q  + 
Sbjct: 583 AAAPTEEEKAQYRRFLASRVGQQDFAAYRKQLENQADIK 621


>gi|167032914|ref|YP_001668145.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           GB-1]
 gi|166859402|gb|ABY97809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           GB-1]
          Length = 623

 Score =  365 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 111/637 (17%), Positives = 236/637 (37%), Gaps = 36/637 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V   + G      + + S     V  Q +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L ++ L  L+S   L Q  ED         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KFS D F   + + G    ++ +   + +    +     G    ++  +D
Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQFREMLAEEMLIGQLRTGLAGSSFVTDQQVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  L  +  PA    S   +   ++++   + +P+   I YI     
Sbjct: 180 AFARLEKQTR--DFASLTFKADPAAVKVSEEEVKAHYDQHAKEFMSPDQVVIDYIELKKS 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               +++++++EL+A+YEK        E R    ++            +  A+E  Q L 
Sbjct: 238 VFFDQVKVTDEELKAQYEKEIANL--AEQRHAAHILIEVNDKVTEAQAKARAEEIEQRLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  +     + G    F+   + D +  D+++ L + G  +  +   FGY
Sbjct: 296 KGEDFAALAKEFSQDPGSANNGGDLGFAGPGVYDPAFEDALYKL-QDGQVSTPVRTEFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     SF  +K  +   ++I    ++  +  K+L++     + + + ++  
Sbjct: 355 HLIKLLGVQAPEVPSFASLKDKLTRDLKIPLVEQRYVDASKQLQDAAYEASDLAQPAQDL 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
            +           G    G+ + A     Q  F     D+  +    + L   + + +++
Sbjct: 415 NLKVHTSAAFGREG----GEGITANRSVVQAAFSEEVLDEGAN-STAIELDPETTVVLRV 469

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
           KE        LE V  ++ +     K   E+ +KA++L+        +      + G   
Sbjct: 470 KEHRKPEQLPLEAVAKNISEHLAKEKATAELKAKADKLIAGLRDG--SIAAGSVHEGQGW 527

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL-----SYVVFK---VTNSK 580
                + R +          +  +F       K  P+   +     S VV +   V    
Sbjct: 528 KAYEAVTRGE---DGIDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLVVLQLKGVNEGA 584

Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               +EK +   YL     +    +    L++   +T
Sbjct: 585 TATDEEKQQIRRYLASRAGQQDFAAYRKQLEANADIT 621


>gi|311106582|ref|YP_003979435.1| peptidyl-prolyl cis-trans isomerase [Achromobacter xylosoxidans A8]
 gi|310761271|gb|ADP16720.1| peptidyl-prolyl cis-trans isomerase [Achromobacter xylosoxidans A8]
          Length = 653

 Score =  365 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 109/663 (16%), Positives = 238/663 (35%), Gaps = 46/663 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IR   R W+  I L+++   F + G+      +     + +V  Q V  + F  + 
Sbjct: 1   MFEFIRSH-RRWMQFILLLLIVPSFFLVGIQGYDSFMRAEPELATVNGQPVTRAEFDQAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L    Q++G   +     +  L + +L+ L++   L     D         +   IA
Sbjct: 60  RNQLEQFRQRLGAQFDPAVIDTPALREGLLNQLINQRLLANVAVDNRFSVSDETLRNTIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     + +FS + +   LA +G++   +     + L+   V+       R    ++ 
Sbjct: 120 AIPEVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLEPVGQSARAPGEVVA 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +    + R+V           +    + A +  W++  K   + PE  ++ Y++ D  
Sbjct: 179 ALETALTQQRTVQLRRFAAADFRSQVSATPADIQAWYDANKQQLQIPEQVQVQYLVLDEA 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AF 287
              + +++ +++L + YE+NK ++  PE R    ++      A E             A 
Sbjct: 239 AATQGVQVKDEDLASYYEQNKNRFGQPERRRASHIMINLAPGASEDARKAARAKAEDLAK 298

Query: 288 QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           Q+     +F +LA    ++ G + +   LG  +   +    L  +IF  AK    + VI 
Sbjct: 299 QAAADPAQFAELARKNSQDAGSAANGGDLGWLAPGMLTGP-LEKAIFGQAKD-QVSGVIE 356

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMD 402
              G  +  V+ I+P+      EVK  I  ++R   A+ +  E   +L + +     S+ 
Sbjct: 357 TPSGLHVVKVTEIQPAAIKPLAEVKDQITAEVRKQLAAVRFSEMASQLNKQVYDQRDSLQ 416

Query: 403 EISRREKIVSID---------LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
             +    +             LP              AA+    ++   +F  D    K 
Sbjct: 417 PAADTVGLKLRTASGVTREGLLPADKAGPGSAAASPDAALLDNPRVRQVLFSPDVLREKQ 476

Query: 454 H--TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
           +   + L   + + +++    PA    L++V   ++      ++AE         +    
Sbjct: 477 NSGVIELSPDTMLALRVAAVEPAHVPPLDKVSEIIRAKLLDERSAEAAKKAGEAALA--- 533

Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGLS 570
                  D              +     + K      +  V   P   +  +   ++G  
Sbjct: 534 ------ADQANPAATPEGFGAPVIVSRQDPKDLPRPVLDAVMRLPATTLPAYAGVQSGAD 587

Query: 571 YVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
           Y + ++   + G     +K++    L+    +   ++++  L+ +Y V V        + 
Sbjct: 588 YTLARLEKVEAGTVDPADKERLAQQLSGAWGQAENEALVRMLREEYKVQVLPAAAA-VIR 646

Query: 629 GEK 631
           GE+
Sbjct: 647 GEQ 649


>gi|148548673|ref|YP_001268775.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           F1]
 gi|148512731|gb|ABQ79591.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           F1]
          Length = 623

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 106/639 (16%), Positives = 239/639 (37%), Gaps = 40/639 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V   + G      + + S     V  Q +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L ++ L  L+S   L Q  ED         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KFS D F   + + G    ++ +   + +    +     G    ++  +D
Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQFREMLGEEMLIGQLRTGLAGSSFVTDQQVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  L  +  PA    S+  +   ++++   + +P+   I YI     
Sbjct: 180 AFARLEKQTR--DFASLTFKADPAAVKVSDEEVKAHYDQHAKEFMSPDQVVIDYIELKKS 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               +++++++EL+A+YEK        E R    ++            +  A+E  Q L 
Sbjct: 238 AFFDQVKVTDEELKAQYEKEIANL--AEQRHAAHILIEVNDKVSDAQAKARAEEIEQRLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  +     + G    F+   + D +  ++++ L + G  +  +   FGY
Sbjct: 296 KGEDFAALAKEFSQDPGSATSGGDLGFAGPGVYDPAFEEALYQL-QNGQVSAPVRTEFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     SF  +K  +   +++    ++  +  K+L++     + + + ++  
Sbjct: 355 HLIKLLGVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQDAAYEASDLAQPAQDL 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
            +           G +        I     ++   F ++  D  +    + L   + + +
Sbjct: 415 NLKVHTSAAFGREGGE-------GITANRAVVQAAFSEEVLDEGANSTAIELDPETTVVL 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++KE        L+ V  ++++     K   E+ +KA++L+        +      + G 
Sbjct: 468 RVKEHRKPEQLPLDAVAKNIREHLAKEKATAELKAKADKLIAGLRDG--SIAAGSVHEGQ 525

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL-----SYVVFK---VTN 578
                  + R +          +  +F       K  P+   +     S VV +   V +
Sbjct: 526 GWKAYEAVTRGE---DGIDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLVVLQLKGVND 582

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                 +EK +   YL     +    +    L++   +T
Sbjct: 583 GATATDEEKQQIRRYLASRAGQQDFAAYRKQLEANADIT 621


>gi|294666558|ref|ZP_06731799.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603702|gb|EFF47112.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 656

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 107/672 (15%), Positives = 236/672 (35%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L +PFL   + ++     G++ V  V              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +     S     ++LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   IA  P F   D KFS D + + LA+        ++       
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+  +L        A  S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLKLMGETRDVELAMLPPPA-ADTAPVSDAQIKQWYD 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +              L+  YE  K ++  PE R    ++  
Sbjct: 238 GHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILIS 297

Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
              +A     +  K           G  F  LA+   +          LG   K  +   
Sbjct: 298 AGPDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++FS+ K G+    I   FGY +  +  +K     SF++V+  +A +     A + 
Sbjct: 358 -FEDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + +    T+++  +++  +    L     +       + + +     +L  
Sbjct: 416 FADVSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 468

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V    +  +  +  +
Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAA 528

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           + A+ L+    K G+  + +  +    +     + R               +FS P    
Sbjct: 529 AAADALLARVQK-GETLQALADSEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
               +     +G  + VF ++ +  G     P +++      L+Q+   +   + +  ++
Sbjct: 585 GKPSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMR 644

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 645 KRYKIQIEEAQL 656


>gi|163736555|ref|ZP_02143974.1| putative peptidyl-prolyl cis-trans isomerse D [Phaeobacter
           gallaeciensis BS107]
 gi|161390425|gb|EDQ14775.1| putative peptidyl-prolyl cis-trans isomerse D [Phaeobacter
           gallaeciensis BS107]
          Length = 613

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 130/629 (20%), Positives = 253/629 (40%), Gaps = 28/629 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   ++K S T+V  I + +L +    +G  +   SVS    V  VG Q+V    +    
Sbjct: 1   MAAGMKKLSNTFV-WILMGMLIIGLAGFGAVNFTGSVSS---VAVVGDQEVSVDDYAREL 56

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++E   +  + G  V   +  ++GLD+ +L  L++ A LDQ   D+GL      ++ EI+
Sbjct: 57  QREQRALEAQTGQRVPIAQMTALGLDRVVLGRLIAIAALDQESSDLGLSIGDQNLFDEIS 116

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           R P F      F+ D +   L   G+ E  +     +  +RT V G  + G    + L D
Sbjct: 117 RIPAFQDGTGAFNRDTYQYALDNIGLTEAAFEADLRRESARTLVQGAIMAGTEMPDTLRD 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
               +    RS D++ ++   +     +PS   L  +++   D +  P  K I+Y     
Sbjct: 177 TLTSYVGARRSFDWLTVSEESIALTAVEPSEDELRTFYDANIDQFTLPRTKVITYAALRP 236

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQ 298
                +IEI    L+  +     +Y  PE R VE+LVF N+  AD A   L   G  F  
Sbjct: 237 DALVDEIEIDAAALEQLFNDRSAEYQVPERRLVERLVFANRDAADSAKAQLDINGTTFDA 296

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           L  ++G SL D+ LG  +   +   S    +F+ A+ G+    +    G  +  ++    
Sbjct: 297 LVADRGLSLQDVDLGDVTMGDL--ASAGQDVFA-AQVGNVVGPLDSDLGPALFRINGRLE 353

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
           +   S ++VK ++  ++   +A   ++   + + + LA G +++E+        ++L  +
Sbjct: 354 ARVTSLEDVKDELRAELATDRARRLIETRSEEINDMLAGGATLEELIDE---PGMELGKI 410

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
           D+      G  +AA     Q    V  +D P        L DGS   +++ E +  R   
Sbjct: 411 DWHNGSTDG--IAAYDGFRQAASAVTAEDFP----EVAFLEDGSLFAIRLDEELEPRPEP 464

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
             +    ++  W++ +  + + ++A +L       G    D     G  L +   + R  
Sbjct: 465 FADAQDKLRAAWQSKRLQDALEAEAERL------AGMLRNDEDLPEGIELTSETGLTRAA 518

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLT 595
             +       +++VF      V     +     V    T       +     +   + L 
Sbjct: 519 YIDAA-PQPLMARVFDLAEGDVAVVSDDTATVVVRLTETLPVADTPEMTALAEAMGTQLD 577

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           Q + + L ++ +   +++ +  +    + 
Sbjct: 578 QALAQALFEAFVQDSQTRAAPRIDPQALN 606


>gi|313499610|gb|ADR60976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           BIRD-1]
          Length = 623

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 106/639 (16%), Positives = 238/639 (37%), Gaps = 40/639 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V   + G      + + S     V  Q +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L ++ L  L+S   L Q  ED         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KFS D F   + + G    ++ +   + +    +     G    ++  +D
Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQFREMLGEEMLIGQLRTGLAGSSFVTDQQVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  L  +  PA    S+  +   ++++   + +P+   I YI     
Sbjct: 180 AFARLEKQTR--DFASLTFKADPAAVKVSDEEIKAHYDQHAKEFMSPDQVVIDYIELKKS 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               +++++++EL+A+YEK        E R    ++            +  A+E  Q L 
Sbjct: 238 AFFDQVKVTDEELKAQYEKEIANL--AEQRHAAHILIEVNDKVTDAQAKARAEEIEQRLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  +     + G    F+   + D +  ++++ L + G  +  +   FGY
Sbjct: 296 KGEDFAALAKEFSQDPGSANSGGDLGFAGPGVYDPAFEEALYQL-QNGQVSAPVRTEFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     SF  +K  +   +++    ++  +  K+L++     + + + ++  
Sbjct: 355 HLIKLLGVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQDAAYEASDLAQPAQDL 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
            +           G +        I     ++   F ++  D  +    + L   + + +
Sbjct: 415 NLKVHTSAAFGREGGE-------GITANRAVVQAAFSEEVLDEGANSTAIELDPETTVVL 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++KE        L+ V  ++++     K   E+ +KA++L+        +      + G 
Sbjct: 468 RVKEHRKPEQLPLDAVAKNIREHLAKEKATAELKAKADKLIAGLRDG--SIAAGSVHEGQ 525

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL-----SYVVFK---VTN 578
                  + R +          +  +F       K  P+   +     S VV +   V  
Sbjct: 526 GWKAYEAVTRGE---DGIDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLVVLQLKGVNE 582

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                 +EK +   YL     +    +    L++   +T
Sbjct: 583 GAAATDEEKQQIRRYLASRAGQQDFAAYRKQLEANADIT 621


>gi|251791833|ref|YP_003006553.1| peptidyl-prolyl cis-trans isomerase D [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533220|gb|ACS96466.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Aggregatibacter aphrophilus NJ8700]
          Length = 615

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 108/632 (17%), Positives = 243/632 (38%), Gaps = 29/632 (4%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E +  AS  W +K     + V F+I  ++  L++ +  ++   V  +++       +++
Sbjct: 3   MEKLNGASNNWASKFLFGFISVTFVISSMAGYLYTRT-DNSAAKVNGEEISQH----AFQ 57

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            +  + S+ +        A+   L ++IL +L+    L Q+  ++ L     R+  EI  
Sbjct: 58  NQYNIASRNLSPQEADSPAQVANLKRQILSSLIDQELLRQYTNELKLGVSDERIKQEIVT 117

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
           SP F   + KF + ++   L   GI+ + Y  +  + L    + G             D 
Sbjct: 118 SPNFQN-NGKFDNALYQQVLQTNGISAETYASYVREALRLEQLQGGLAITAFSVPAQRDA 176

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
             + +F+ R++    L+     A    ++A +  +++ +K ++  PE  ++ Y+      
Sbjct: 177 LAKLFFQRRNIRLANLSLADEIAKQTVTDAEIQAYYDAHKADFTIPESVKVQYLDLSGAN 236

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
            EK I I++ E+   Y+ NK ++ +   + +  +    +++A + +  L+ G  F  LA+
Sbjct: 237 MEKNINITDVEIAQYYQDNKAQFTTQGQQRLAHIQVKTEQQAQDLYNQLQNGAAFADLAK 296

Query: 302 ----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +   +     L   S    P V   D+  +LA  G ++  +     Y I  V   K
Sbjct: 297 NHSIDPTSAEKGGDLSWVSAGEFPKV-FEDAANALA-VGQYSQPVKLDNNYHIILVKERK 354

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
            +  +  + VK  IA Q+R    + +     KR+ E      S   +        + +  
Sbjct: 355 DAGVLPLENVKAQIAAQIRQNLINNQFFSVEKRVAEKAFEDPS--SLKAAADEAGVKVQE 412

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPAR 475
             +  ++     + A      +   +F  +     S    +++ +   + V++ E     
Sbjct: 413 TGYFSRN----NIPAALNYPNVASAIFDSEISQGGSNSEPMSVGEQHSLVVRVLEHKAQS 468

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
            + LEE   ++    K  K    V ++A++ V E +  GK         G          
Sbjct: 469 TKSLEEAKAEIIATLKQQKAETVVLAQADKFVQELA-SGKTVD------GVKFGAEQTWV 521

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--PVQEKDKFISY 593
             +N+N        S       +       +     V+  +     G    +E+ +F   
Sbjct: 522 FAENKNPALNNQVFSMAKPTEGKTTYKAAKDTKGDVVIIALDKVTDGKLSEEEQKQFAVQ 581

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           + Q     L  +++  L+++  + ++D+ I +
Sbjct: 582 IEQATQVGLQSNLLNALRAKAKIEINDSFINQ 613


>gi|77459915|ref|YP_349422.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens Pf0-1]
 gi|77383918|gb|ABA75431.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens Pf0-1]
          Length = 623

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 98/639 (15%), Positives = 235/639 (36%), Gaps = 40/639 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+     + G      + +  +    V  +++  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIVALMALTGFDAIFQATTHKNEAAKVNGEEISQNELSQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   ++       L +  L  L+    L Q  E          +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDASLLDEKMLRESALKGLIDRKLLLQGAEQSKFAFSEAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KFS D F   + + G +  ++     + +    +     G    ++  + 
Sbjct: 121 QTPEFQ-VDGKFSSDRFDQVIRQLGYSRMQFRQMLAQEMLIGQLRAGVAGSGFVTDAQVL 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  LN +  P+    ++  +  +++++   +  P+   I Y+     
Sbjct: 180 AFARLEKQTR--DFATLNIKADPSAVKLTDDEVKAYYDEHAKEFMTPDQVVIDYLELKKS 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               ++ + +++LQA Y+K        E R    ++            + + +E    L 
Sbjct: 238 SFFDQVAVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKTTEAQAKAKIEEVQARLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+KF  LA+E  +     + G    ++   + D +   +++SL K    +  +   FG+
Sbjct: 296 KGEKFEALAKEFSQDPGSANNGGDLGYAGPGVYDPAFEKALYSLNKD-QVSEPVRTDFGF 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     +   +K  +  +++  +  ++  E  K+LE+     + + + ++  
Sbjct: 355 HLIKLLGVEAPEVPTLASLKDKLTRELKTQQVEQRFVEATKQLEDSSFEASDLAQPAQDL 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
           K+           G +        +     ++   F  +  +  +    + L   + + +
Sbjct: 415 KLTVHTSKPFGREGGE-------GVAANRAVVTAAFSTEVLEEGANSTAIELDPETVIVL 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           + KE +      LE V   ++        +    + A QL+    ++GK   D   + G 
Sbjct: 468 RAKEHLKPAQLPLESVAAAIRTQLTKEHASAAAKTHAEQLIASL-RDGKTPLDKAVD-GQ 525

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--FKVTN 578
           S   T   NR     +      +  +F  P    K  P      + +G   +V    V  
Sbjct: 526 SWKVTEAANRA---QEGVDPAVLQALFRMPKPAAKDKPTFTSVTLADGSLTIVRLNGVNE 582

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +     +EK ++  +L   + +    +    L+++  + 
Sbjct: 583 AAAPTDEEKAQYRRFLASRVGQQDFAAYRKQLEAEADIK 621


>gi|188578367|ref|YP_001915296.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522819|gb|ACD60764.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 675

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 105/672 (15%), Positives = 234/672 (34%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L +PFL   + ++     G++ V  V              
Sbjct: 20  MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 78

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +     S     ++LD LV    + 
Sbjct: 79  PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 138

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   IA    F   D KFS D + + LA+        ++       
Sbjct: 139 LGAEDAGIVIGDASVRDYIANIQAFQ-VDGKFSPDKYRAALAQGTPPRTPAQFDALVRDS 197

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+  +L    +   A  S+A + QW++
Sbjct: 198 LQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPPPAM-DTALVSDAQIKQWYD 256

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    ++  
Sbjct: 257 GHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 316

Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
              +A     +  K           G  F  LA+   +          LG   K  +   
Sbjct: 317 AGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 376

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++FS+ K GD    I   FGY +  +  +K     SF++V+  +A +     A + 
Sbjct: 377 -FEDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDKLAAEQLKADADKA 434

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + L    T+++  +++  +    L     +       + + +     +L  
Sbjct: 435 FADVSGKLVDQLYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 487

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V    +  +  +  +
Sbjct: 488 AFSETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAA 547

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           +     +L   + G+  + +  +    +     + R               +FS P    
Sbjct: 548 AA-ADALLARVQRGETLQALAASEKLQVQPIPGLPRTAPIPTPVAN---RAIFSAPRPTE 603

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
                     +G  + VF ++ +  G     P +++      L+Q+   +   + +  ++
Sbjct: 604 GKPSFGKVELDGGRFAVFAISKATPGNLKQMPAEQQTMLREQLSQIDGNNAAQTYVKQMR 663

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 664 KRYKIQIEEAQL 675


>gi|149203720|ref|ZP_01880689.1| hypothetical protein RTM1035_06628 [Roseovarius sp. TM1035]
 gi|149142837|gb|EDM30879.1| hypothetical protein RTM1035_06628 [Roseovarius sp. TM1035]
          Length = 614

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 260/620 (41%), Gaps = 32/620 (5%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
             + + +L V    +G ++         ++  VG  ++  +++  + + E+  +  + G 
Sbjct: 11  MWVLMGLLIVGLAGFGATNL---SGNVRSIGHVGTAEIDVTTYARALQNEIRALEAERGS 67

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            ++   AR+ G+D  +L  LV+ A L+   + +GL      +  +I   P F G D  F 
Sbjct: 68  AMSFAEARAAGVDTDVLGRLVARAALEHEADRLGLSIGDENLREQILDIPSFQGLDGSFD 127

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            + +   L + G+NE ++ ++     + T V    + G++  +  +D    +  E RS+ 
Sbjct: 128 REAYRFALDQAGLNESQFEENIRAETASTLVQAAALAGLQTPSTYMDTMMTYLAERRSLA 187

Query: 194 YIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
           + VL+   + + +  PS   L  + + +  ++  PE K I++           +E+    
Sbjct: 188 FAVLDRAALQSGLPVPSEDDLKTYHQGHLPDFTTPETKTITFAWVTPAMILDSVEVDEAA 247

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+  Y + + ++  PE R VE+LVF +   A  A   +  G     L  E+G  ++DI +
Sbjct: 248 LREAYAERETEFNMPERRLVERLVFADSAAATRARTRIDDGIALEMLVSERGLDMADIDM 307

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           G  S+E +   + AD +FS A+ G+    I  + G  +  V+ +  +   +F+E +  + 
Sbjct: 308 GDVSREDLG--AAADPVFS-AQAGEVVGPIDTNLGPALFRVNAVLAAQITTFEEAEPRLR 364

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
            ++   +A   ++     +++ LA G +++++++      ++L  +D+     +G  +A 
Sbjct: 365 EELAADRARRVIEAKIDTVDDLLAGGATLEDVAKE---TDLELGSIDWHPGLTEG--MAG 419

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
                     V   D P        L DG    +++   +  R + LE+V   V + W+ 
Sbjct: 420 YDSFRAAAQAVATGDYP----EVEQLADGGIFALRLDGIVEPRIQPLEDVRDAVLRGWRA 475

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
             T   + ++    + E  + G +F D    LG +      + R D   +    + I  V
Sbjct: 476 EATVTALRAQLEPQLAEL-RAGASFAD----LGLTATEVTDMTRRDYRPEA-PAEFIDTV 529

Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT--------QMMNKDLLD 604
           F      V+       L   V ++ +       E+D+ ++ L           + +DL  
Sbjct: 530 FDMVQGEVRVIEGNGRL--FVLRLDSIAPPLPAEEDEDLARLRAALQDQAAADLGQDLFQ 587

Query: 605 SVIAYLKSQYSVTVHDNLIQ 624
            +   ++S+  V +    + 
Sbjct: 588 VLANDIRSRAGVELDQAALN 607


>gi|26989028|ref|NP_744453.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           KT2440]
 gi|24983852|gb|AAN67917.1|AE016424_3 peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas putida
           KT2440]
          Length = 623

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 105/639 (16%), Positives = 238/639 (37%), Gaps = 40/639 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V   + G      + + S     V  Q +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L ++ L  L+S   L Q  ED         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KFS + F   + + G    ++ +   + +    +     G    ++  +D
Sbjct: 121 QTPEFQ-VDGKFSAERFDQVIRQMGYGRMQFREMLGEEMLIGQLRTGLAGSSFVTDQQVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  L  +  PA    S+  +   ++++   + +P+   I YI     
Sbjct: 180 AFARLEKQTR--DFASLTFKADPAAVKVSDEEVKAHYDQHAKEFMSPDQVVIDYIELKKS 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               +++++++EL+A+YEK        E R    ++            +  A+E  Q L 
Sbjct: 238 AFFDQVKVTDEELKAQYEKEIANL--AEQRHAAHILIEVNDKVTDAQAKARAEEIEQRLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  +     + G    F+   + D +  ++++ L + G  +  +   FGY
Sbjct: 296 KGEDFAALAKEFSQDPGSANTGGDLGFAGPGVYDPAFEEALYKL-QDGQVSAPVRTEFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     SF  +K  +   +++    ++  +  K+L++     + + + ++  
Sbjct: 355 HLIKLLGVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQDAAYEASDLAQPAQDL 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
            +           G +        I     ++   F ++  D  +    + L   + + +
Sbjct: 415 NLKVHTSAAFGREGGE-------GITANRAVVQAAFSEEVLDEGANSTAIELDPETTVVL 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++KE        L+ V  ++++     K   E+ +KA++L+        +      + G 
Sbjct: 468 RVKEHRKPEQLPLDAVAKNIREHLAKEKATAELKAKADKLIGGLRDG--SIAAGSVHEGQ 525

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL-----SYVVFK---VTN 578
                  + R +          +  +F       K  P+   +     S VV +   V  
Sbjct: 526 GWKAYEAVTRGE---DGIDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLVVLQLKGVNE 582

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                 +EK +   YL     +    +    L++   +T
Sbjct: 583 GAAATDEEKQQIRRYLASRAGQQDFAAYRKQLEANADIT 621


>gi|254252159|ref|ZP_04945477.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
 gi|124894768|gb|EAY68648.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
          Length = 645

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 102/659 (15%), Positives = 240/659 (36%), Gaps = 45/659 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V +V   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDAAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVREALM 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D     + +   L+ +G+  ++Y +     L+   +    +        
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIISSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L  +      + R V  +VL      A   P++A L  +++ +K ++  P    I Y+++
Sbjct: 180 LAQRLSELAAQQREVQSLVLKTSDYAAKVQPTDAQLAAYYDAHKQSFATPATATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + ++ +++  Y+ N   + +     V  +                + +A++
Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAASSASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +K     F Q+AE+  +          LG  ++       +  D+ F+L K+G+ +
Sbjct: 300 LLAEVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGEVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+    G+ I   + +KP+    F EVK  IA  ++   A++   ++ +     +    
Sbjct: 359 GVVESDLGFHILKATEVKPAVLKPFAEVKDQIAADLKQQYAAKAFSDNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            S+   + + K+      +       +        P   + L  VF  D   + ++T  +
Sbjct: 419 KSLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNP---KFLAAVFADDAVKNHNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ +  PA    L+ +   V++     + AE         + E  K  K+
Sbjct: 476 DVGNNTLISARVVDYKPAAVPALDAIKDAVRQKVVAEQAAELAKKDGAAKLAELQKS-KS 534

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                     S   +  +              +S V+    + +  +   +     Y ++
Sbjct: 535 TDGFTAAQKISRTQSQGLT----------PAALSAVYKVDPKTLPAYVGVDLGADGYAIY 584

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           +V     G   +  +  +   QM   +     ++ +A L+ +  V ++ +   +  DG+
Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVEAQSEGEAYLAALRDRSKVKLYGSTASQPQDGD 643


>gi|172060885|ref|YP_001808537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
 gi|171993402|gb|ACB64321.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
          Length = 644

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 102/647 (15%), Positives = 241/647 (37%), Gaps = 45/647 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V +V   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D     + +   L+ +G+  ++Y +     L+   +    V        
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKG 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              +      + R V  +VL      A   P++A LT +++ +K ++  PE   I Y+++
Sbjct: 180 PAQRLSELAAQQREVQALVLKTSDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + ++ +++  Y+ N   + S     V  +                + +A++
Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKTKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +K     F Q+A++  +          LG  ++       +  D+ F+L K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGDVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+    G+ I   + +KPS    F +VK  IA Q++   A++   ++ +     +    
Sbjct: 359 GVVQSDLGFHILKATEVKPSVVKPFADVKDQIAVQLKQQYAAKAFTDNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            ++   + + K+      ++      +        P   + L  VF  D   S+++T  +
Sbjct: 419 KTLQPAADKYKLTIQTATVMPTPNPQLPPTSPLNNP---KFLAAVFASDSVKSRNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ +  PA    L+ +   V++     +  E         + E  K    
Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDTIKDAVRQKVVAEQATELAKKDGAAKLAELQK---- 531

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                           +++RM  +++      +S V+    + +  +   +     Y ++
Sbjct: 532 -----SKSADGFTPVQKVSRM--QSQGLTPAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584

Query: 575 KVTNSKVGPVQEKDKFIS---YLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +V     G   +  +  +    + Q+  +   ++ +A L+ +  V +
Sbjct: 585 RVNAVIPGTAVDPQQLAAAQHQMAQVEAQSEGEAYLAALRDRSKVKL 631


>gi|107028901|ref|YP_625996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116689941|ref|YP_835564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
 gi|105898065|gb|ABF81023.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116648030|gb|ABK08671.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
          Length = 645

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 106/647 (16%), Positives = 234/647 (36%), Gaps = 45/647 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V +V   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D     + +   L+ +G+  ++Y +     LS   +    V        
Sbjct: 120 SDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L         + R V  +VL      A   P++A LT +++ +K ++  PE   I Y+++
Sbjct: 180 LAQHLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285
                    + +  +++  Y+ N   + +     V  +                  +A++
Sbjct: 240 SPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +K     F Q+A++  +          LG  ++       +  D+ FSL K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSL-KQGDVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            ++    G+ I   + +KP+    F EVK  IA  ++   AS+   ++ +     +    
Sbjct: 359 GIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAVDLKQQYASKAFSDNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            ++   + + K+      +       +        P   + L  VF  D   ++++T  +
Sbjct: 419 KTLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNP---KFLAAVFANDAVKNQNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ E  PA    L+ +   V++     + AE         + E  K  K+
Sbjct: 476 DVGNNTLISARVTEHKPAAVPALDAIKDVVRQKVIAEQAAELAKKDGAAKLAELQKS-KS 534

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                     S   +  +              +S V+    + +  +   +     Y ++
Sbjct: 535 TDGFAAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTV 618
           +V     G   +  +  +   QM   D     ++ +A L+ +  V +
Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKL 631


>gi|308050304|ref|YP_003913870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica
           DSM 9799]
 gi|307632494|gb|ADN76796.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica
           DSM 9799]
          Length = 624

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 103/634 (16%), Positives = 238/634 (37%), Gaps = 40/634 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+   AKI L  + + F + G+   L   +       V  +++       ++
Sbjct: 1   MLEKIREGSQGVAAKIILGAVILSFALTGVYSYL-GTNSEMLAAEVNGEEITRYDLDQAF 59

Query: 61  KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G + +S  A      GL + +LD L++   +DQ + D+GL     ++  
Sbjct: 60  QNEQARMRAQLGEMFDSLSADPTYMAGLRQSVLDRLIAERLIDQKVADLGLRVSDDQIQQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF +  + + L +  ++  +  D   + +SR  +V   +G    ++ 
Sbjct: 120 AIVAMPEFQ-VDGKFDNARYQAVLRQNNLSGVQLRDMLRRDMSRQQLVVGLLGSEFVTDA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                     + R + Y++++     A  + S++ ++ +++  +  +  PE   + Y+  
Sbjct: 179 EAQALTALQQQTRDLRYLLVSQADYNAGIEVSDSEISDFYQANQARFATPEEVSVEYVEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-------EADEAFQSL 290
            V +    + ++++E +A Y+     Y  PE R    ++F                    
Sbjct: 239 AVSDLAGDVSVTDEEAKAFYDSQANAYQQPERRLAAHMLFEGDDAQARAEAALARVRAGE 298

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
                  + +++   + +   L   +   + + +   ++F+L ++G+ + VI   +GY I
Sbjct: 299 AFAAVAAEASDDTFTAENGGELDWMTPGQM-EPAFDAALFAL-QEGETSDVIKTEYGYQI 356

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
            +   I+ +    F EVK  I   ++  KA  +     ++L +        D +    + 
Sbjct: 357 VNAKKIEAATQRPFDEVKASIIATLQADKAQTEFYGLQQKLADVSFQVP--DSLVETAEA 414

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQI 468
           V  ++   +   ++     +       + L   F     L       V + +G  + +++
Sbjct: 415 VGGEVKTTEMFSRNNAPAPM----DNPRALAAAFSDSVLLDGMNSEVVQIDNGHILVLRV 470

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
           K    A    LE+V   ++    T K +++  ++A  +   +    +    I        
Sbjct: 471 KAHQAAGTETLEQVKERIRAQLVTEKASDKAMTEAAAIEAAWQAGTEPTDVIA------- 523

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF------PIENGLSYVVFKVTNSKVG 582
                + R    +       +  VF+    +          P  +     + KVT+    
Sbjct: 524 --VAGVGRFGQPD--LDPTLVQSVFTMAKPVDGSVFSHFRLPSGDIAIVALDKVTDGSA- 578

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
             +        L Q M +    S+I  L++   +
Sbjct: 579 EAELVGALKGRLAQQMGEADYRSLIDSLRADAEI 612


>gi|254240198|ref|ZP_04933520.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 2192]
 gi|126193576|gb|EAZ57639.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 2192]
          Length = 621

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 104/640 (16%), Positives = 238/640 (37%), Gaps = 44/640 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+ V   + G    + +   S+    V    +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L +  L  L+    L Q  +D         +   I 
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KF+ D F   + +   +  ++     + +    +     G    ++  L 
Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  L  +   + +  S+  +  ++E +K  +  PE   + Y+     
Sbjct: 180 SFARLEKQTR--DFATLAIKADASKSSVSDDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               ++++  ++L+A Y+K        E R    ++            + + DE    L 
Sbjct: 238 SFFDQVKVKQEDLEALYQKEIANLS--EQRDAAHILIEVNDKVGDEQAKAKIDEIKARLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  + +   + G    ++   + D +  +++++L K+G+ +  +   +GY
Sbjct: 296 KGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPYGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     S + +K  + ++++     ++  E  K LE        + + ++  
Sbjct: 355 HLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEM 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
            +          +G D        I    Q++   F  +  +  +    + L   + + +
Sbjct: 415 GLKVQTSQPFGRSGGD-------GIAANRQIVQTAFSPEVLEEAANSGAIELDPDTVVVL 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++KE    +++ LE+V  ++++     K AEE   +   L+ E  +EG+         G 
Sbjct: 468 RVKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRGEALIAEL-REGRT----SSAAGE 522

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581
           S       +R     +      +  VF       K  P  +G++     YVV ++     
Sbjct: 523 SWKVVEAASRG---QEGVDPKLLQAVFRMQRPEAKDKPSLSGVTLANGDYVVIRLNGVSE 579

Query: 582 GPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                   EK  +  +L     +    +    L+ +  V 
Sbjct: 580 PEEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVE 619


>gi|325914922|ref|ZP_08177254.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538815|gb|EGD10479.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 685

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 106/672 (15%), Positives = 233/672 (34%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L +PFL   + ++     G++ V  V              
Sbjct: 30  MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPTWW 88

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +     S     ++LD LV    + 
Sbjct: 89  PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 148

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   I     F   D KFS D + + LA+        ++       
Sbjct: 149 LGAEDAGIVIGDATVRDYITNIQAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 207

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+  +L        A  S+A + QW++
Sbjct: 208 LQQSVIPQAVAESGFATKTEFERLLKLMGETRDVELAML-PAPAADTAPVSDAQIKQWYD 266

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    ++  
Sbjct: 267 THAQDFRQPETVSIEYVELNAATMPPATAADEATLRKRYEEEKARFVEPDQRLASHILIT 326

Query: 279 NQKE-----------ADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
              +           A  A  + + G  F  LA+   +          LG   K  +   
Sbjct: 327 AGSDAAAQKAAEAKAAKLAADAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 386

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++FS+ K GD    I   FGY +  +  +K     SF++V+   A +     A + 
Sbjct: 387 -FEDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQFAAEQLKADADKA 444

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + +    T+++  +++  +    L               + I     +L  
Sbjct: 445 YADISGKLVDQVYKNPTALEPAAKQVGVPVQTLGPFSRT-------TASGIAANPAVLRS 497

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V       ++ +  +
Sbjct: 498 AFSETLVQDGTVSDPITIAPNHSVMLRVTNHTAEQALPLDKVRDKVTAAVHADRSEKAAA 557

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           + A+ L+    K G+  + +  +    +     + R               +FS P    
Sbjct: 558 AVADALLARVQK-GETLQALAASEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 613

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
               +     +G  + VF ++ +  G     P +++      L+Q+   +   + +  ++
Sbjct: 614 GKPSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMR 673

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 674 KRYKIQIEEAQL 685


>gi|15597002|ref|NP_250496.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PAO1]
 gi|107101237|ref|ZP_01365155.1| hypothetical protein PaerPA_01002270 [Pseudomonas aeruginosa PACS2]
 gi|9947788|gb|AAG05194.1|AE004606_8 peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PAO1]
          Length = 621

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 104/640 (16%), Positives = 239/640 (37%), Gaps = 44/640 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+ V   + G    + +   S+    V    +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L +  L  L+    L Q  +D         +   I 
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KF+ D F   + +   +  ++     + +    +     G    ++  L 
Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  L  +   + +  S+  +  ++E +K  +  PE   + Y+     
Sbjct: 180 SFARLEKQTR--DFATLAIKADASKSSVSDDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               ++++  ++L+A Y+K        E R    ++            + + DE    L 
Sbjct: 238 SFFDQVKVKQEDLEALYQKEIANLS--EQRDAAHILIEVNDKVGDEQAKAKIDEIKARLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  + +   + G    ++   + D +  +++++L K+G+ +  +   +GY
Sbjct: 296 KGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPYGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     S + +K  + ++++     ++  E  K LE        + + ++  
Sbjct: 355 HLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEM 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
            +          +G D        I    Q++   F  +  +  +    + L   + + +
Sbjct: 415 GLKVQTSQPFGRSGGD-------GIAANRQIVQTAFSAEVLEEAANSGAIELDPDTVVVL 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++KE    +++ LE+V  ++++     K AEE   +   L+ E  +EG+         G 
Sbjct: 468 RVKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRGEALIAEL-REGRT----SSAAGE 522

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581
           S       +R    ++      +  VF       K  P  +G++     YVV ++     
Sbjct: 523 SWKVVEAASRG---HEGVDPKLLQAVFRMQRPEAKDKPSFSGVTLANGDYVVIRLNGVSE 579

Query: 582 GPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                   EK  +  +L     +    +    L+ +  V 
Sbjct: 580 PEEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVE 619


>gi|170733279|ref|YP_001765226.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
 gi|169816521|gb|ACA91104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
          Length = 645

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 106/647 (16%), Positives = 235/647 (36%), Gaps = 45/647 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V +V   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQHLHLTASDNAVRDALM 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D     + +   L+ +G+  ++Y +     LS   +    V        
Sbjct: 120 SDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L  +      + R V  +VL      A   P++A LT +++ +K ++  PE   I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285
                    + +  +++  Y+ N   + +     V  +                  +A++
Sbjct: 240 SPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +K     F Q+A++  +          LG  ++       +  D+ FSL K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSL-KQGDVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            ++    G+ I   + +KP+    F EVK  IA  ++   AS+   ++ +     +    
Sbjct: 359 GIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAVDLKQQYASKAFSDNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            ++   + + K+      +       +        P   + L  VF  D   ++++T  +
Sbjct: 419 KTLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNP---KFLAAVFANDAVKNQNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ E  PA    L+ +   V++     + AE         + E  K  K+
Sbjct: 476 DVGNNTLISARVTEHKPAAVPALDAIKDVVRQKVIAEQAAELAKKDGAAKLAELQKS-KS 534

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                     S   +  +              +S V+    + +  +   +     Y ++
Sbjct: 535 TEGFAAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTV 618
           +V     G   +  +  +   QM   D     ++ +A L+ +  V +
Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKL 631


>gi|256556956|gb|ACU83578.1| parvulin-like peptidyl-prolyl isomerase [uncultured bacterium
           HF130_AEPn_2]
          Length = 623

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 101/639 (15%), Positives = 234/639 (36%), Gaps = 40/639 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V     G+     + + S     V  +++  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMAFTGIEAIFQATTNSQDAAKVNGEEISQNELSQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   ++       L +  L  L+    L Q   D         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDASLLDEKMLREAALKGLIERKLLLQGAADSKFSFSEAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F  +D KFS + F   + + G +  ++    T+ +    +     G    ++  + 
Sbjct: 121 QTPEFQ-EDGKFSAERFDQVIRQLGYSRMQFRQMLTQEMLIGQLRAGIAGSGFVTDQEVL 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  ++ +  PA    ++  +  +++++   +  P+   I Y+     
Sbjct: 180 NFARLEKQTR--DFATVSVKADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKKA 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               ++ +++DELQA YE  KE     E R    ++            + + DE    L 
Sbjct: 238 SFFDQVTVNDDELQALYE--KETANLAEQRRAAHILIEVNDKVTEAQAKAKIDEVQARLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  +     + G    F+   + D     +++ L +    +  +  SFG+
Sbjct: 296 KGESFEALAKEFSQDPGSANNGGDLGFAGPGVYDPEFESALYGLNQD-QVSAPVRSSFGW 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     SF  +K  +  +++  +  ++  E  K+LE+     + + + +   
Sbjct: 355 HLIKLLGVEAPEVPSFASLKDKLTRELKTQQVEQRFVEATKQLEDAAFEASDLAQPASDL 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
           K+           G +        I     ++   F  +  D  +    + L   + + +
Sbjct: 415 KLTVHTSAPFGREGGE-------GITANRAVIQAAFSPEVLDEGANSTAIELDPETIVVL 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           + KE        LE V T ++      + +    + A++L+                 G 
Sbjct: 468 RAKEHRKPEQLPLESVATAIRAQMTKERASAAAKAHADELIANLRDGKLALDKPVD--GQ 525

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--FKVTN 578
           +   T    R     +      +  +F     + K  P      + +G   +V    VT 
Sbjct: 526 AWKVTEAATRG---QEGVEPAVLQALFRMAKPVAKDKPTFADVTLRDGSLMIVRLNSVTE 582

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                 +EK+++  +L   + +    +    L+++  + 
Sbjct: 583 GAAPTEEEKEQYRRFLASRVGQQDFAAFRKELEAKADIK 621


>gi|116049755|ref|YP_791438.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313110502|ref|ZP_07796387.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
           aeruginosa 39016]
 gi|115584976|gb|ABJ10991.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310882889|gb|EFQ41483.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
           aeruginosa 39016]
          Length = 621

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 104/640 (16%), Positives = 237/640 (37%), Gaps = 44/640 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+ V   + G    + +   S+    V    +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L +  L  L+    L Q  +D         +   I 
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KF+ D F   + +   +  ++     + +    +     G    ++  L 
Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  L  +   + +  S   +  ++E +K  +  PE   + Y+     
Sbjct: 180 SFARLEKQTR--DFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               ++++  ++L+A Y+K        E R    ++            + + DE    L 
Sbjct: 238 SFFDQVKVKQEDLEALYQKEIANLS--EQRDAAHILIEVNDKVGDEQAKAKIDEIKARLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  + +   + G    ++   + D +  +++++L K+G+ +  +   +GY
Sbjct: 296 KGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPYGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     S + +K  + ++++     ++  E  K LE        + + ++  
Sbjct: 355 HLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEM 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
            +          +G D        I    Q++   F  +  +  +    + L   + + +
Sbjct: 415 GLKVQTSQPFGRSGGD-------GIAANRQIVQTAFSPEVLEEAANSGAIELDPDTVVVL 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++KE    +++ LE+V  ++++     K AEE   +   L+ E  +EG+         G 
Sbjct: 468 RVKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRGEALIAEL-REGRT----SSAAGE 522

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581
           S       +R     +      +  VF       K  P  +G++     YVV ++     
Sbjct: 523 SWKVVEAASRG---QEGVDPKLLQAVFRMQRPEAKDKPSLSGVTLANGDYVVIRLNGVSE 579

Query: 582 GPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                   EK  +  +L     +    +    L+ +  V 
Sbjct: 580 PEEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVE 619


>gi|330503121|ref|YP_004379990.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
 gi|328917407|gb|AEB58238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
          Length = 615

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 94/636 (14%), Positives = 228/636 (35%), Gaps = 42/636 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  SR W+AKI + ++ +     G    +   S  +    V    +  +    + 
Sbjct: 1   MLQNIRDNSRGWIAKIIIGLIVMLMAFTGFEAIVTGTSNRNNAADVNGDTITLNELNQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   + Q++G   ++       L +  L  L+    L Q   D       G +   I 
Sbjct: 61  EMQRRQLLQQLGRDFDASLLDEKLLREASLKGLIERKLLLQAANDAHFAFSQGSLDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D +F    F   + + G    ++     + +    +          +     
Sbjct: 121 QTPEFQ-VDGRFDASRFDQVIRQMGYTRLQFRQMLEEEMLIGQLRAGLGASSFVTEQEAR 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                  + R  D+  L  +  PA  + ++A +  +++++   + +PE   + Y+     
Sbjct: 180 AFANLERQTR--DFASLTIKADPAAVELNDADVKAYYDEHASEFMSPEQVVLEYVELQKD 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-----DEAFQSLKKGKK 295
               ++E+S+++L+  YE         E R    ++     EA     +E  + +  G+ 
Sbjct: 238 SFFDQVEVSDEDLKPLYESEIANL--AEQRQAAHILIEGDDEAARSKIEEIKKRVDAGED 295

Query: 296 FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F  LA+E  +       G    ++   + D +   ++++L ++G  +  +   FG+ +  
Sbjct: 296 FAALAKEFSQDPGSAVDGGDLGYAGPGVYDPAFEKALYAL-QQGQVSEPVKSEFGWHLIK 354

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           +  ++     SF  +K  +A   +  +  +   E  K+LE+     + + + ++      
Sbjct: 355 LLGVQAPEVPSFDSLKDKLARDFKAQQVEQHFVEATKQLEDAAFQASDLAQPAQEL---G 411

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           +++      G++     + A     Q+L   F  D  +  +   T+ L   + + V++KE
Sbjct: 412 LEVKTSAAFGREGGATGITA---NRQVLQAAFSPDVLEDGANSSTIELDPSTVVVVRVKE 468

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                   LE+V   ++      + +    ++  + +              + + A+   
Sbjct: 469 HNKPEQLPLEQVAESIRGHLLQERASAAAKAEGEKQLAAAEAG--------EAVAANWQV 520

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKVGPVQ 585
                R            +  +F  P       P   G++     YVV ++    V    
Sbjct: 521 QEAATRS---QDGVEPKVLQALFRMPKPAKAGEPTFAGVTLNNGDYVVLRLDGVNVPEET 577

Query: 586 EKDKFISY----LTQMMNKDLLDSVIAYLKSQYSVT 617
             D+ ++     L     +    ++   L+++  + 
Sbjct: 578 LADEELAMYRNFLASRAGQQDFAALRKQLEAKADIE 613


>gi|56697010|ref|YP_167372.1| hypothetical protein SPO2145 [Ruegeria pomeroyi DSS-3]
 gi|56678747|gb|AAV95413.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 614

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 127/617 (20%), Positives = 252/617 (40%), Gaps = 26/617 (4%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
              I + +L      +G  +         TV  VG Q V   ++    ++E+  I  + G
Sbjct: 12  FVWILMGLLIAGLAGFGAVNL---SGTVRTVAQVGEQTVSVDAYARELQREIRGIEAQTG 68

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
             +   + R +G+D+ +L  LV+ A LD  +  +G+      +  EI + P F G D KF
Sbjct: 69  QPLQMSQVRDLGIDQAVLARLVAIAALDNEVAGLGISIGDENLSREIVQIPAFQGVDGKF 128

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
             + +   L   G++E E+     +  +RT V G  + G+   +   D   +F    RS 
Sbjct: 129 DPEGYRYALDNAGLSEAEFEADLRRESARTLVQGAIMEGLVMPDTYADTLAQFVGARRSF 188

Query: 193 DYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
               ++   + + +A P  A +  ++   +D +  P  KR++Y L        ++E+   
Sbjct: 189 TMATVDTGALDSPVAAPDAAQIEAFYADNQDQFMLPRSKRLTYALLTPEMLLDRVELDEG 248

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDI 310
            ++  YE+ +  Y  PE R VE+LVF +Q  A+ A   ++  G  F  L E +G SL+D+
Sbjct: 249 AVRRLYEERESSYQQPERRLVERLVFADQASAESAMAQVEVGGATFELLVEGRGLSLTDV 308

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            +G  + + +   + A      A+ GD    +    G  +  V+    +   +F+ V+ +
Sbjct: 309 DMGDLTAQDLGAAAEAVFA---AEVGDVVGPLPSDLGPALFRVNGTLDARITTFESVEAE 365

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           + +++   +A   ++   + L + LA G +++E+++      ++L  +D+      G  V
Sbjct: 366 LRDELAGERARRLIEAQAESLNDMLAGGATLEELAQD---TDMELGQIDWTEDSSDG--V 420

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
           AA      +   V   D P        L DG+   +++ E +  R   L+     V   W
Sbjct: 421 AAYAGFRAVATEVAEGDFP----EIGFLEDGAVFALRLDEELEPRPEPLDSARERVIAAW 476

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
              +T   +  KA  +    + +G          G      N + R    +    +D + 
Sbjct: 477 TAAETRRALQDKAASVATGLATDGDF-----TATGLPHRVENGLTRTAFIDGT-PFDFME 530

Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVI 607
           QVF+     +K    ++    V  +            Q K    + +TQ + ++L D  +
Sbjct: 531 QVFAMQPGDLKVIAGDDAAFIVRLEEELPPADTDELTQMKRALSAQMTQALAQNLFDIYV 590

Query: 608 AYLKSQYSVTVHDNLIQ 624
              +++   T+    + 
Sbjct: 591 RDAQTRAQPTLDQRALN 607


>gi|218892241|ref|YP_002441108.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
           LESB58]
 gi|218772467|emb|CAW28249.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
           LESB58]
          Length = 621

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 104/640 (16%), Positives = 238/640 (37%), Gaps = 44/640 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+ V   + G    + +   S+    V    +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L +  L  L+    L Q  +D         +   I 
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KF+ D F   + +   +  ++     + +    +     G    ++  L 
Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  L  +   + +  S   +  ++E +K  +  PE   + Y+     
Sbjct: 180 SFARLEKQTR--DFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               ++++  ++L+A Y+K        E R    ++            + + DE    L 
Sbjct: 238 SFFDQVKVKQEDLEALYQKEIANLS--EQRDAAHILIEVNDKVGDEQAKAKIDEIKARLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  + +   + G    ++   + D +  +++++L K+G+ +  +   +GY
Sbjct: 296 KGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPYGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     S + +K  + ++++     ++  E  K LE        + + ++  
Sbjct: 355 HLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEM 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
            +          +G D        I    Q++   F  +  +  +    + L   + + +
Sbjct: 415 GLKVQTSQPFGRSGGD-------GIAANRQIVQTAFSAEVLEEAANSGAIELDPDTVVVL 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++KE    +++ LE+V  ++++     K AEE   +   L+ E  +EG+         G 
Sbjct: 468 RVKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRGEALIAEL-REGRT----SSAAGE 522

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581
           S       +R    ++      +  VF       K  P  +G++     YVV ++     
Sbjct: 523 SWKVVEAASRG---HEGVDPKLLQAVFRMQRPEAKDKPSFSGVTLANGDYVVIRLNGVSE 579

Query: 582 GPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                   EK  +  +L     +    +    L+ +  V 
Sbjct: 580 PEEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVE 619


>gi|146307082|ref|YP_001187547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
 gi|145575283|gb|ABP84815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
          Length = 615

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 93/634 (14%), Positives = 227/634 (35%), Gaps = 38/634 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  SR W+AKI + ++ +     G    +   S  +    V    +  +    + 
Sbjct: 1   MLQNIRDNSRGWIAKIIIGLIVMLMAFTGFEAIVTGTSNRNNAAEVNGDTITLNELNTAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   + Q++G   ++       L +  L  L+    L Q   D         +   I 
Sbjct: 61  EMQRRQLLQQLGRDFDASLLDDKLLREASLKGLIERKLLLQAAGDADFAFSQAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D +F    F   + + G +  ++     + +    +          +     
Sbjct: 121 QTPEFQ-VDGRFDAARFDQVIRQMGYSRLQFRQMLEEEMLIGQLRAGLGASSFVTEQDAR 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                  + R    + +     PA  + +++ +  +++++   + +PE   + Y+     
Sbjct: 180 AFANLERQTRDFASVTIKAD--PAAVELADSDVQAYYDEHASEFMSPEQVVLEYVELHKD 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-----DEAFQSLKKGKK 295
               +IE+S+D+LQ  YE         E R    ++      A     +E    +  G+ 
Sbjct: 238 SFFDQIEVSDDDLQPLYESEIANL--AEQRQAAHILIEGDDAAARTKIEEIKARVDAGED 295

Query: 296 FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F  LA+E  +     + G    ++   + D +  +++++L + G  +  +   FG+ +  
Sbjct: 296 FAALAKEFSEDPGSAADGGDLGYAGPGVYDPAFEEALYAL-QTGQVSEPVRSDFGWHLIK 354

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           +  ++     SF  +K  +A   +  +  ++  E  K+LE+     + + + ++      
Sbjct: 355 LLGVQAPEVPSFDSLKDKLARDFKAQQVEQRFVEATKQLEDAAFEASDLAQPAQEL---G 411

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
           ++L + +  G++     + A     Q  F     +D  +   T+ L   + + V+ KE  
Sbjct: 412 LELKVSEAFGREGGATGITANRQVLQAAFSPEVLEDGTN-SSTIELDPSTVVVVRAKEHR 470

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
                 LE+V   ++      + +    ++  +L+             G++ GA+     
Sbjct: 471 KPEQLPLEQVAESIRAHLLQERASAAAKAEGEKLLAAAR--------AGESEGANWQVQE 522

Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKVGPV--- 584
              R            +  +F          P   G++     YVV ++           
Sbjct: 523 AATRS---QDGVEPKVLQALFRMSKPTTAGEPSYAGVTLNNGDYVVLRLDGVNAPDEALT 579

Query: 585 -QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +E   + ++L     +    ++   L+++  + 
Sbjct: 580 SEELAMYRNFLASRAGQQDFAALRKQLEAKADIE 613


>gi|254247971|ref|ZP_04941292.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
 gi|124872747|gb|EAY64463.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
          Length = 645

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 106/647 (16%), Positives = 235/647 (36%), Gaps = 45/647 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V +V   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D     + +   L+ +G+  ++Y +     LS   +    V        
Sbjct: 120 SDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L  +      + R V  +VL      A   P++A LT +++ +K ++  PE   I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285
                    + +  +++  Y+ N   + +     V  +                  +A++
Sbjct: 240 SPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +K     F Q+A++  +          LG  ++       +  D+ FSL K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSL-KQGDVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            ++    G+ I   + +KP+    F EVK  IA  ++   AS+   ++ +     +    
Sbjct: 359 GIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAVDLKQQYASKAFSDNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            ++   + + K+      +       +        P   + L  VF  D   ++++T  +
Sbjct: 419 KTLQPAADKYKLTIQTATVTPTPNPQLAPTSPLNNP---KFLAAVFANDAVKNQNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ E  PA    L+ +   V++     + AE         + E  K  K+
Sbjct: 476 DVGNNTLISARVTEHKPAAVPALDAIKDVVRQKVIAEQAAELAKKDGAAKLAELQKS-KS 534

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                     S   +  +              +S V+    + +  +   +     Y ++
Sbjct: 535 TDGFAAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTV 618
           +V     G   +  +  +   QM   D     ++ +A L+ +  V +
Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKL 631


>gi|206560356|ref|YP_002231120.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia J2315]
 gi|198036397|emb|CAR52293.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia J2315]
          Length = 644

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 105/659 (15%), Positives = 240/659 (36%), Gaps = 45/659 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V +V   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D     + +   L+ +G+  ++Y +     L+   +    V        
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L  +      + R V  +VL      A   P++A LT +++ +K ++  PE   I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285
                    + +  +++  Y+ N   + +     V  +                  +A++
Sbjct: 240 SPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +K     F Q+A++  +          LG  ++       +  D+ FSL K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSL-KQGDVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            ++    G+ I   + +KP+    F EVK  IA  ++   AS+   ++ +     +    
Sbjct: 359 GIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAIDLKQQYASKAFSDNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            ++   + + K+      +       +      +     + L  VF  D   ++++T  +
Sbjct: 419 KTLQPAADKYKLTIQTATVTPTPNPQL---PPTSPLNNAKFLAAVFANDSVKNQNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ +  PA    L+ +   V++     + AE         + E  K  K+
Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDAIKDVVRQKVIAEQAAELAKKDGAAKLAELQKS-KS 534

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                     S   +  +              +S V+    + +  +   +     Y ++
Sbjct: 535 TDGFAAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           +V     G   +  +  +   QM   D     ++ +A L+ +  V ++     +  DG+
Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKLYGTTASQQQDGD 643


>gi|113867510|ref|YP_725999.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
 gi|113526286|emb|CAJ92631.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
          Length = 644

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 115/651 (17%), Positives = 234/651 (35%), Gaps = 53/651 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  +  V++F  F+ +G+      +  S     V  + +      N  
Sbjct: 1   MLDFVRNNRRLMLLLLL-VLVFPSFVFFGVESYSRFMDSSHDAAKVDGRAISVQEIDNVV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +     Q +G   +  +       K +LD L+    +   +    L     ++  EI+
Sbjct: 60  RDQSERARQVLGASYDPRQFEGPDARKAVLDQLILQRVMASAVAREHLTVSDAKLLEEIS 119

Query: 121 RSPLF----HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             P        KD K     ++  L  +G+  +++       L+   +            
Sbjct: 120 NLPAIAQLPRTKDGKVDDKAYLQLLQSQGMTPEQFDARMRFELATQQLGASVAATAFVPK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            LLD+      + R V  ++       A   P  A L  +++ ++  +  PE  ++ Y+L
Sbjct: 180 SLLDRLIAVRDQQRDVQALLFKPAGYTAKVQPDAAALKAYYDSHQQAFSVPEQAKVEYLL 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-- 294
                      ++ +EL++ Y+ N  ++   E R    ++    K+A  A +   K K  
Sbjct: 240 LSGEALAATQAVTPEELKSYYDSNIARFRIDEQRRASHILISAPKDAPAAQRQAAKDKAT 299

Query: 295 -----------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                       F  +A    ++ G +     LG   +  +      D++++L K G  +
Sbjct: 300 KLLEDLRKHPDTFADVARKNSQDPGSAEKGGDLGFMGRGALVKP-FEDAMYAL-KDGQVS 357

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
            V+   +GY I  ++ IKP+ T   + V+ ++  ++R   A +K  E         A G 
Sbjct: 358 DVVETDYGYHIIKLTGIKPAETKPLEAVRTELEAELRKQFADKKFAEQAD------AFGN 411

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY-----KEQLLFRVFGKDDPLSKDH 454
           ++ E +   K  +    L      +V  +   A+        ++LL  +F  D   +K +
Sbjct: 412 TVYEQADSLKPAADKFKLTIQTADNVTRQPNPALGAQSPLNNDKLLKALFSDDAIKNKRN 471

Query: 455 T--VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
           T  V +   + +  +I E  PA  RK EEV   V++ +   + AE         +    K
Sbjct: 472 TEAVQVAPNTLVAARIVEYRPAAVRKFEEVEAKVREGYIAQQAAELARKDGEARLAALKK 531

Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLS 570
                 D     GA       ++R   E        +  V       +      +     
Sbjct: 532 -----ADSADGFGA----VQTVSRAKAEG--MPPKAVEAVLRADANKLPAVVGVDLGAEG 580

Query: 571 YVVFKVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           Y V+++T           ++      L+Q+  +  L +    LK++  V +
Sbjct: 581 YAVYRITKVSQPTQANPAQRQAEAQQLSQLAGQTDLQAFYESLKARSKVKM 631


>gi|85703584|ref|ZP_01034688.1| hypothetical protein ROS217_22622 [Roseovarius sp. 217]
 gi|85672512|gb|EAQ27369.1| hypothetical protein ROS217_22622 [Roseovarius sp. 217]
          Length = 604

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 123/620 (19%), Positives = 264/620 (42%), Gaps = 32/620 (5%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
             + + +L      +G ++         +V  VG  ++  +++  + + E+  +  + G 
Sbjct: 1   MWVLMGLLIAGLAGFGATNL---SGTVRSVGHVGTAEIDLTTYARALQNEIRALEAERGS 57

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            ++   AR+ G+D  +L  L++ A L+   + +GL      +  +I   P F G D  F 
Sbjct: 58  AISLAEARAAGVDTDVLSRLIARAALEHEADRLGLSIGDANLREQIVEIPAFQGLDGSFD 117

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            + +   L + G+NE ++ ++     + T V    + G++     LD    +  E RS+ 
Sbjct: 118 REAYRFALDQAGLNETQFEENIRAETASTLVQAAALAGLQTPATYLDTMMTYLAERRSLA 177

Query: 194 YIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
           + VL+   + + +  PS   L  + +    ++  PE K+I++           +E+    
Sbjct: 178 FAVLDRSALQSGLPVPSEEDLQAYHQANLPSFTTPETKKIAFAWITPAMIIDSVEVEEAA 237

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+  Y + + ++  PE R VE+L+F + + A  A   + +G     L  E+G  +SD+ L
Sbjct: 238 LRDAYAEREAEFNLPERRLVERLIFADTEAATRARARIDEGIALEMLVSERGLEMSDVDL 297

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           G  ++E +   S A+ +FS A+ G+    I  S G  +  V+ I  +    F+E +  + 
Sbjct: 298 GDVAREDLG--SAAEPVFS-AEAGEVVGPIDTSLGPALFRVNAILAAQVTPFEEAEPQLR 354

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
           +Q+   +A   ++     +++ LA G +++++++     +++L  +D+     +G  +AA
Sbjct: 355 DQLAGDRARRVIEAQIDTVDDLLAGGATLEDVAKE---TNMELGSIDWHPGLTEG--MAA 409

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
                +    V   D P      V L DG    +++      R + LE+V   V   W+T
Sbjct: 410 YDSFREAADAVATGDYP----EVVQLADGGIFALRLDGIDEPRVQPLEDVRDAVLNGWRT 465

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
             T E + ++    + E  + G +F D    LG +    + + R D   +    + I  V
Sbjct: 466 KATVEALKTQVEPQLAEL-RAGASFAD----LGLTATDISNMTRRDYRPEA-PAEFIDTV 519

Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--------FISYLTQMMNKDLLD 604
           F      V+    E  L   V ++ +        +D+            +   + +DL  
Sbjct: 520 FDMEEGEVRVIEGEGRL--FVLRLDSIAPPAEDAEDEDLTRLRSALQDQVAGDLGQDLFQ 577

Query: 605 SVIAYLKSQYSVTVHDNLIQ 624
            +   ++++  V ++   + 
Sbjct: 578 VLANDIRARAGVELNQAALN 597


>gi|254476823|ref|ZP_05090209.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. R11]
 gi|214031066|gb|EEB71901.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. R11]
          Length = 613

 Score =  362 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 126/628 (20%), Positives = 261/628 (41%), Gaps = 28/628 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   ++K S+T+V  I + +L V    +G  +   SV     V  VG Q+V    +    
Sbjct: 1   MAAGMKKLSKTFV-WILMGMLIVGLAGFGAVNFTGSVGS---VAVVGEQEVSVDDYAREL 56

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++E   +  + G  +   +  ++GLD+ +L  L++ A LDQ   D+GL      ++ EI+
Sbjct: 57  QREQRALEAQTGQRMPIAQLTTLGLDRVVLGRLIAIAALDQESSDLGLSIGDENLFEEIS 116

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           R   F      FS + +   L   G+NE+ +     +  +RT V G  + G    + L D
Sbjct: 117 RIEAFQDPAGNFSRENYQFALENIGLNERAFEADLRRESARTLVQGAVMVGTEMPDTLRD 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
               +    RS D++V++   +     +P+   L  +++   D +  P  K I+Y     
Sbjct: 177 TLTNYIGARRSFDWLVIDPASIALTAVEPTEEELRAFYDANIDQFTLPRTKVITYAALRP 236

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQ 298
                +IE+    LQ  +    ++Y  PE R VE+LVF +Q  A  A   L   G  F  
Sbjct: 237 DALVDEIEVDEAALQQLFNDRSDEYQVPERRLVERLVFADQDAAASAKAQLDINGTTFEA 296

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           L E +G +L DI +G  +   +   + A  +FS A+ G     +    G  +  V+    
Sbjct: 297 LVENRGLTLQDIDMGDVTMGDLG--TAAQDVFS-AEVGTVVGPLDSDLGPALYRVNGRLE 353

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
           +      +V+ ++  ++   +A   ++   + + + LA G +++E+ +      ++L  +
Sbjct: 354 ARVTQLDDVRDELRAELATDRARRLIETRAEDINDMLAGGATLEELEQE---PGMELGQI 410

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
           D+      G  +AA      +   V  +D P        L DGS   +++ E +  R   
Sbjct: 411 DWHTGSSDG--IAAYDGFRSVASAVTIEDFP----EVEFLEDGSLFALRLDEELEPRPEP 464

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
            E+    ++  W+  +  E + ++A++ V    + G +  +        L +   + R  
Sbjct: 465 FEDAQDKLRAAWQDNRLQEAMKAEADR-VAALLRSGDDLPE-----DLILTSEEGLTRTA 518

Query: 539 NENKFFGYDGISQVFSGPVEMVKCF--PIENGLSYVVFKVTNSKVGPVQE-KDKFISYLT 595
                   + + +VF      V     P    +  ++ ++  ++   +    +   + L 
Sbjct: 519 FIEAA-PQEMMIRVFDMAPGDVAVVSDPRATAVVRLIEELPVAETPEMAALSEAMGTQLD 577

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           Q + + L ++ +  ++++ +  +    +
Sbjct: 578 QALAQALFEAFVQDVQTRAAPRIDPQAL 605


>gi|229591358|ref|YP_002873477.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25]
 gi|229363224|emb|CAY50307.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25]
          Length = 624

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 99/640 (15%), Positives = 234/640 (36%), Gaps = 41/640 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59
           ML+ IR  S+ W+AK  + ++       G+     +   S   V  V  +++  +    +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAIFQASGNSKQDVAKVNGEEITQTELSQA 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
              +   + Q++G   ++       L +  L +L+    L Q   D         +   I
Sbjct: 61  VDMQRRQLMQQLGKDFDASLLDEKLLREAALKSLIDRKLLLQGAADSKFGFSEAALDQVI 120

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            ++P F   D KF+ + F   + + G +  ++    T+ +    V     G    ++  +
Sbjct: 121 LQTPEFQ-VDGKFNAERFDQVIRQLGYSRLQFRQMLTQEMLIGQVRAGIAGSGFVTDSEV 179

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
               R   + R  D+  +N +  PA    ++  +  +++++   +  P+   I Y+    
Sbjct: 180 LAFARLEKQTR--DFATVNIKANPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKK 237

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSL 290
                ++ + +DELQA Y+  KE     E R    ++            + + +E    L
Sbjct: 238 SSFFDQVAVKDDELQAAYQ--KETANLAEQRRAAHILIEVNDKVTDAQAKAKIEEIQARL 295

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            KG+KF  LA+E  +     S G    F+   + D     ++++L+K    +  +  +FG
Sbjct: 296 AKGEKFEALAKEFSQDPGSASNGGDLGFAGPGVYDPDFETALYALSKD-QVSAPVRSTFG 354

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           + +  +  ++     +F  +K  +  +++  +  ++  E  K+LE+     + + + +  
Sbjct: 355 WHLIKLLGVEAPQVPTFASLKDKLTKELKTQQVEQRFVEATKQLEDAAFEASDLAQPASD 414

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465
            K+           G +        +     ++   F  +  D  +    + L   + + 
Sbjct: 415 LKLTVHTSAPFGREGGE-------GVAANRAVVTAAFSPEVLDEGANSTAIELDPETIIV 467

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           ++ KE +      LE V   ++      + +    + A++L+                 G
Sbjct: 468 LRAKEHLKPAQLPLESVAAAIRTQMAKERASAAAKTHADELIASLRDGKTPLNQPVD--G 525

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--FKVT 577
            +   T    R     +      +  +F  P    K  P      + +G   +V    V 
Sbjct: 526 QAWKVTEAATRS---QETIDPAVLQALFRMPKPAAKDKPTFTTVTLADGSLVIVRLNGVN 582

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +     +EK ++  +L   + +    +    L+++  + 
Sbjct: 583 EAAAPTDEEKAQYRRFLASRVGQQDFAAYRKQLETKADIK 622


>gi|242277701|ref|YP_002989830.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           salexigens DSM 2638]
 gi|242120595|gb|ACS78291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           salexigens DSM 2638]
          Length = 633

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 110/640 (17%), Positives = 242/640 (37%), Gaps = 38/640 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M++I+R+ +++W  KI   ++   F+  +G     F+ +    +  V  Q VP   F+  
Sbjct: 1   MMDILRQNAQSWGIKIAFGIIIAVFIFAFGAGG--FNGNTDPVIAYVNDQPVPTQEFMQV 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +++    +  +    ++S++ +S    K +L+ LVS   L+   E +GL   +  +   I
Sbjct: 59  YRETAEALRAQ-NPNLDSDQLQSPEFKKAVLEQLVSQKLLEAEAEKLGLSVSNSELSYSI 117

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
           ++ P F  KD KF  +++ + L    ++   + +        + +       ++P+    
Sbjct: 118 SKIPAFADKDGKFDMNLYQAFLQSRAMSAATFENDMRNSALISKLQEYVTMPVKPTEADA 177

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                   E   +DY  ++          S+  +  +++   D +  P    + YI F  
Sbjct: 178 RALFDSAAEKVQIDYYYVSGADFVKNIKISDKQIEDFYKANPDKFTIPARSVVKYIAFTP 237

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAF 287
            E      ++ +E++A YE NKE +          ++               +K+  +  
Sbjct: 238 EELSINETVTPEEIKAYYEANKETFQQEAQVNARHILITVDENASDKDVAAAEKKIKKVL 297

Query: 288 QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
              K G+ F +LA++      S     LG F +  +      ++ F+L KKG+ +  +  
Sbjct: 298 AKAKSGQDFGKLAKKYSEGPSSSKGGELGWFGRGAMVKP-FEEAAFAL-KKGEISEPVRT 355

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  + +++ +      +VK +I + +   KA++ + +      + LA G  +D++
Sbjct: 356 RFGWHLIKIDDVREAGQKDIDQVKDEINSLIAQEKAADSITDKLDHAIDLLASGMKLDKV 415

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           S    I                     +       L +    D P++        DG Y+
Sbjct: 416 SEELGIAFKKSEQATVENLSRAFGMTESAAQTIIALPKGNATDMPVA-------IDGGYI 468

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            V+ +  +P     L++   D++      +      +KA  L+ + S E K      K +
Sbjct: 469 LVEKEADVPPSLSPLKDQKQDIESFLSQQQAMNLAKAKALALMGQLSNE-KTEAAALKVI 527

Query: 525 GASLLTTNQINRMDNENKFFGYD---GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
              L T+    R                +        M + F +  G  ++V +V     
Sbjct: 528 KKDLKTSEPFGRDGFVPGLGMNPKLAQAALAAKKDQWMSEVFELPGG--FIVARVDERIP 585

Query: 582 GPVQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
              +    +KD  +  + Q    ++  + +  L+S+  V 
Sbjct: 586 PKEEAWAAQKDMVMDAIFQQRANEVFGAFLNELRSKAKVE 625


>gi|254234899|ref|ZP_04928222.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
           C3719]
 gi|296389804|ref|ZP_06879279.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas aeruginosa PAb1]
 gi|126166830|gb|EAZ52341.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
           C3719]
          Length = 621

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 104/640 (16%), Positives = 237/640 (37%), Gaps = 44/640 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+ V   + G    + +   S+    V    +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L +  L  L+    L Q  +D         +   I 
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KF+ D F   + +   +  ++     + +    +     G    ++  L 
Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  L  +   + +  S   +  ++E +K  +  PE   + Y+     
Sbjct: 180 SFARLEKQTR--DFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               ++++  ++L+A Y+K        E R    ++            + + DE    L 
Sbjct: 238 SFFDQVKVKQEDLEALYQKEIANLS--EQRDAAHILIEVNDKVGDEQAKAKIDEIKARLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  + +   + G    ++   + D +  +++++L K+G+ +  +   +GY
Sbjct: 296 KGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPYGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     S + +K  + ++++     ++  E  K LE        + + ++  
Sbjct: 355 HLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEM 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
            +          +G D        I    Q++   F  +  +  +    + L   + + +
Sbjct: 415 GLKVQTSQPFGRSGGD-------GIAANRQIVQTAFSAEVLEEAANSGAIELDPDTVVVL 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++KE    +++ LE+V  ++++     K AEE   +   L+ E  +EG+         G 
Sbjct: 468 RVKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRGEALIAEL-REGRT----SSAAGE 522

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581
           S       +R     +      +  VF       K  P  +G++     YVV ++     
Sbjct: 523 SWKVVEAASRG---QEGVDPKLLQAVFRMQRPEAKDKPSLSGVTLANGDYVVIRLNGVSE 579

Query: 582 GPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                   EK  +  +L     +    +    L+ +  V 
Sbjct: 580 PEEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVE 619


>gi|58580660|ref|YP_199676.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425254|gb|AAW74291.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 675

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 105/672 (15%), Positives = 234/672 (34%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L +PFL   + ++     G++ V  V              
Sbjct: 20  MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 78

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +     S     ++LD LV    + 
Sbjct: 79  PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 138

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   IA    F   D KFS D + + LA+        ++       
Sbjct: 139 LGAEDAGIVIGDASVRDYIANIQAFQ-VDGKFSPDKYRAALAQGTPPRTPAQFDALVRDS 197

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+  +L    +   A  S+A + QW++
Sbjct: 198 LQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPPPAM-DTAPVSDAQIKQWYD 256

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    ++  
Sbjct: 257 GHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 316

Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
              +A     +  K           G  F  LA+   +          LG   K  +   
Sbjct: 317 AGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 376

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++FS+ K GD    I   FGY +  +  +K     SF++V+  +A +     A + 
Sbjct: 377 -FEDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDKLAAEQLKADADKA 434

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + L    T+++  +++  +    L     +       + + +     +L  
Sbjct: 435 FADVSGKLVDQLYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 487

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V    +  +  +  +
Sbjct: 488 AFSETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALLLDKVRDKVTAAIRADRAEKAAA 547

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           +     +L   + G+  + +  +    +     + R               +FS P    
Sbjct: 548 AA-ADALLARVQRGETLQALAASEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 603

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
                     +G  + VF ++ +  G     P +++      L+Q+   +   + +  ++
Sbjct: 604 GKPSFGKVELDGGRFAVFAISKATPGNLKQMPAEQQTMLREQLSQIDGNNAAQTYVKQMR 663

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 664 KRYKIQIEEAQL 675


>gi|78046641|ref|YP_362816.1| peptidylprolyl isomerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035071|emb|CAJ22716.1| peptidylprolyl isomerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 656

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 108/672 (16%), Positives = 238/672 (35%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L +PFL   + ++     G++ V  V              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +     S     ++LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   IA  P F   D KFS D + + LA+        ++       
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+  +L        A  S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLKLMGETRDVELAMLPPPA-ADTAPVSDAQIKQWYD 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +              L+  YE  K ++  PE R    ++  
Sbjct: 238 GHAQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILIS 297

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
                        K A  A ++ + G  F  LA+   +          LG   K  +   
Sbjct: 298 AGADAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGAMVKP 357

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++FS+ K G+    I   FGY +  +  +K     SF++V+  +A +     A + 
Sbjct: 358 -FEDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + +    T+++  +++  +    L     +       + + +     +L  
Sbjct: 416 FADVSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 468

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V    +  +  +  +
Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAA 528

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           + A+ L+    K G+  + +  +    +     + R               +FS P    
Sbjct: 529 AAADALLARLQK-GETLQALADSEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
               +     +G  + VF ++ +  G     P +++      L+Q+   +   + +  ++
Sbjct: 585 GKPSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMR 644

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 645 KRYKIQIEEAQL 656


>gi|325920988|ref|ZP_08182874.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
           19865]
 gi|325548522|gb|EGD19490.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
           19865]
          Length = 656

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 105/672 (15%), Positives = 235/672 (34%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L +PFL   + ++     G++ V  V              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +     S     ++LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGDNFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   I     F   D KFS D + + LA+        ++       
Sbjct: 120 LGAEDAGIVIGDATVRDYITGIQAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+  +L        A  S+A + QW++
Sbjct: 179 LQQSVIPQAIAESGFATKAEFERLLKLMGETRDVELAMLPPPA-ADTAPVSDAQIKQWYD 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +  + +         L+  YE+ K ++  P+ R    ++  
Sbjct: 238 GHAQDFRQPETVTIEYVEINAAKLQPATAADEATLRKRYEEEKGRFVEPDQRLTSHILIS 297

Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
              +      +  K           G  F  LA+   +          LG   K  +   
Sbjct: 298 AGSDPAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKGAGGDLGWVEKGTMVKP 357

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++F++ K GD    I   FGY +  +  +K     SF++V+  +A +     A + 
Sbjct: 358 -FEDALFAM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415

Query: 384 VKEDYKRLEEFLALGTS-MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + +    + ++  +++  +    L     A       + + I     +L  
Sbjct: 416 FADVSGKLVDQVYKNPTVLEPAAKQVGLPVQTLGPFSRA-------DASGIAANPAVLRS 468

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V       +T +  +
Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHGAEQALPLDKVRDKVIAAIHADRTEKAAA 528

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           + A+ L+    K G+  + +  +    +     + R               +FS P    
Sbjct: 529 AAADALLARVQK-GETLQALAASEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
               +     +G  + VF +  +  G     P +++      L+Q+ + +   + +  ++
Sbjct: 585 GKRSVGKVELDGGRFAVFVIAKATPGDLKQMPAEQQTMLREQLSQIDSNNAAQAYVKEMR 644

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 645 KRYKIQIEEAQL 656


>gi|311695072|gb|ADP97945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine bacterium
           HP15]
          Length = 614

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 121/634 (19%), Positives = 245/634 (38%), Gaps = 39/634 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++  +AK+ + +L V   IWG+   +   SG   V +V  + +    F+   
Sbjct: 1   MLQDIRNNAQGTIAKVIIGLLIVSLSIWGMDAIVGGFSGEPEVATVNGEDITEREFLRVV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E      ++    +        +   +LD+L+    L Q     GLE +   +   I 
Sbjct: 61  QMESQRRLSRMENP-DPSMLDEDQIRTDVLDSLIQEQVLIQDANAQGLELNDADIDALIT 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F   D +F+ D FV+ +   G+   E+ +   K      +    V     ++   +
Sbjct: 120 QMPQFQ-VDGQFNRDRFVATVRNMGMGVGEFREAMRKQYVVNQIRAGIVQSGLVADENAE 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  +   + RS   + +    V      S+A +  ++E+    ++ PE    +YI   + 
Sbjct: 179 QLLQIQNQTRSFRVLDIPASSVADAVSVSDADVEAFYEENSGAFQQPERVDAAYITLSLG 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE----AFQSLKKGKKF 296
              + IE+ + ELQA YE+      S E R    ++     +ADE      + L  G+ F
Sbjct: 239 ALAESIEVDDAELQAYYEQQAADLAS-EERRASHILIEEGSDADETMATIQERLAAGESF 297

Query: 297 IQLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LA E       +     LG   +  I      +++F+L ++G+ +  +  SFG  +  
Sbjct: 298 ADLAREYSIDTVSAEDGGDLGYAGRG-IYAEPFEEALFAL-EEGEVSEPVRTSFGVHLIR 355

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           + +++ S   S  E++  +  ++   KA E+  E    L +       +   +    +  
Sbjct: 356 LEDVRESEVPSLDEMEDQLRRELAREKAREQFAEVRAELADSAYAADDLAGPAEELGLEV 415

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL---PDGSYMWVQIK 469
            +   V   G           P+    L R    +D L   +   L    D   +  ++ 
Sbjct: 416 REANGVTRDGGQ--------APFDHAGLVRQLFSEDVLDAGYNTELIDVGDNVSVVARVN 467

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +   A    L++V   ++   +  KT E +S +A+ ++ +  + G++   IG        
Sbjct: 468 KYHEAEQLPLDQVRDQIRTTLEQRKTREALSERADAIIADL-ESGQSPEGIG-----EWS 521

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVE-----MVKCFPIENGLSYVVFKVTNSKVGPV 584
           +   + R  +E    G   + QVFS P         K     +     + +VT+ +V   
Sbjct: 522 SYEGLARNASEA---GPAILQQVFSLPRPADGARFGKAVMANSAAVIALDEVTDGQVSED 578

Query: 585 -QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             E ++   +L  +  +    +   +L+++  V 
Sbjct: 579 GTELNQLREFLASLEGQREYAAYQQFLRNRAEVE 612


>gi|302878839|ref|YP_003847403.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
           capsiferriformans ES-2]
 gi|302581628|gb|ADL55639.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
           capsiferriformans ES-2]
          Length = 631

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 116/654 (17%), Positives = 257/654 (39%), Gaps = 47/654 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + + +  R    +I L+++ +PF  +G+     S    +   +V  +K+    F  + 
Sbjct: 1   MFDFVHEKRR--FVQIVLLLIILPFAFFGVDSYRHSGDTDAP-ATVNGEKITKQEFDTAM 57

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+   + Q +G   +        + + ILDNLV+   L +  +  GL     ++   I 
Sbjct: 58  RQQQDKMRQVLGENFDPALFEKAEMKRAILDNLVAQRLLLERAKAAGLTVTDEQIAQVIG 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F     KF    + S LA + +    +       L+   +   +      SN + D
Sbjct: 118 GIDAFKD-GGKFDKARYTSALAAQNMTPAIFEARVKDELTGQQMRDAYTQNGYVSNAVAD 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                  + R V    + +R   A A   +A +  +F+  +  ++ PE  ++ Y+ F + 
Sbjct: 177 NIIAINEQQRIVSIAPILSRSFMAQAKVDDAAIKTYFDANQKEFQVPEQVKVEYVKFSIA 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288
           +   K +I  +E++  Y++++ ++ S E R    ++               + +A++   
Sbjct: 237 DLIAKADIKAEEVRQYYDEHQSEFASAEQRQASHILLVVAATAPQAEQDAVKAKAEKLLA 296

Query: 289 SLKK-GKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            +K+   KF  LA    ++ G +++   LG F +  +      +++FSL K G+ + ++ 
Sbjct: 297 QVKQEPGKFADLARQNSQDPGSAVNGGDLGMFGRGMMVKP-FDEAVFSL-KAGEISGLVK 354

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             FGY I  ++ IK S    F EV+ +IA ++R  KA++   E   +    +   +  D 
Sbjct: 355 SDFGYHIIKLTAIKASRATPFNEVQAEIAGKLRQQKAADSFAELADKFSNTVYEQS--DT 412

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDG 461
           +     +  + +    +  K     E+    +  +++  +F  D   +  +T  V +   
Sbjct: 413 LKPAAVLAGVKVEQSGWLSKGAAAGEI----WTAKMMQAIFSDDVIKNHRNTAAVEVAGS 468

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
           + +  ++ E  PA  R L +V   +K+        +    +   L+ +  + GK   D  
Sbjct: 469 TLVAARLLEHKPAAVRGLADVADSIKQKLLLKIALDMSVKQGTMLLGQLQQGGKAALDWS 528

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGLSYVVFKVTNSK 580
                +    + ++             + ++F      +  +   E    Y + ++   K
Sbjct: 529 VAQPVTHGQHSALD----------AAMVRKLFQADGSKLPQYVGSETADGYTIVRIDAVK 578

Query: 581 VGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
            G   +   + ++   L QM   +L  + IA  K    + +   L +   + EK
Sbjct: 579 EGAKPDEVKRSRYAQQLRQMAGDELFQAYIADAKKDAKIKL--KLPEAAAETEK 630


>gi|149910316|ref|ZP_01898960.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Moritella sp. PE36]
 gi|149806676|gb|EDM66643.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Moritella sp. PE36]
          Length = 636

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 112/640 (17%), Positives = 238/640 (37%), Gaps = 35/640 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE  R+ S+   AKI L  + V F + G+S  L     + +  +V    +   +  N  
Sbjct: 1   MLEKFREGSQGPGAKIILGAVIVTFALAGVSSYL-GGGSNQSAATVNGVDISTQALENQV 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + +   +  + G        +      + ++ L+ L++   L Q   D+ L     ++ G
Sbjct: 60  RTDRSRLESQQGESFAVRWEQPEFQNQVRQQSLNTLIAQNLLQQMTNDLALSIGDEKIRG 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     F   D  F+ + ++S L + G+   ++++      ++  +    V        
Sbjct: 120 YIFAMQEFQ-TDGVFNDERYISLLRQNGMTPAQFVERLRVDFAQQQLTDALVNSEFSLPN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            + Q      + R +  +++      A    ++A +  ++E  K  ++ P+   + YIL 
Sbjct: 179 EVKQLAALQNQQRELSQLIVPANKFAADIVVTDAEVNSYYEDSKAFFQTPQQASVDYILV 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290
           D+      IE+  D  +  Y ++   Y   + R V  ++          Q++A +    +
Sbjct: 239 DMKNISAGIELDADAAENYYNEHLSSYTQEDKRKVAHILVAFNDDESAAQEKAQDLLTQI 298

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDF-TPVIHGSF 346
           + G  F +LA+           G    + ++ I D +   + F+L   GD  T ++   F
Sbjct: 299 QSGADFAELAKTSSDDTFSGENGGELDWLEKDIMDPAFETAAFALQNDGDVTTELVRSDF 358

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEIS 405
           G+ I  +  ++     +F +VK  I  +++  +A     E  + L E+   +  S+D  S
Sbjct: 359 GFHIIKLLAVESGKVKAFTDVKTTIETRLKNEQAVSHFDELAETLAEQAFEVPDSLDVAS 418

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSY 463
               +  +   L            + A     ++   +F +D          + + D   
Sbjct: 419 EETGLTIVSTELF-------SANAIPAPLNDPRVAATLFDQDFIAEALNSEIINISDEQS 471

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           + V+I E  P   + L EV  ++       K  ++  S    +  +    G++      +
Sbjct: 472 IVVRINEYKPQTTKALAEVNDEIVARLTATKAEQKALSFMTSVSAKI-NAGESVVAELAS 530

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS----YVVFKVTNS 579
           + AS      ++R D     F    +S++FS P    +   I    S      + K ++ 
Sbjct: 531 MDASFTAPEWLSRFDYSKADF--KVLSKLFSMPKPAAEQASIATETSLNGDVTLLKFSSV 588

Query: 580 KVGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +      +E  +    L  M  +   D +I  L     V+
Sbjct: 589 RDAKINAEEAARLADTLKNMNAQADYDMLIQTLIKAADVS 628


>gi|269468957|gb|EEZ80538.1| Parvulin-like peptidyl-prolyl isomerase [uncultured SUP05 cluster
           bacterium]
          Length = 613

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 108/626 (17%), Positives = 250/626 (39%), Gaps = 26/626 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IR  ++ W+A + + ++ VPF ++G+++  F+ + +  V S+   ++    F+N +
Sbjct: 1   MLSSIRNKTKGWLAYLIVGLITVPFALFGINEY-FTGTSNIIVASIDGDEISKEDFLNEF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++    ++E      L + ++ ++V+   L QF + +        +   I 
Sbjct: 60  NPQKRRLQQRLSERYDTEF--DAVLKQSVMRDMVNRRLLSQFSDGLDYATTSVELQAMIQ 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            + LF   D KFS D +   L   G +  EY     K L+++ +   F+     +   L 
Sbjct: 118 SNDLFQ-VDGKFSIDTYQKLLRLNGYSTAEYESIKLKELTQSQIKYNFLDSAFITPSALK 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +    + R   YI ++  +       +   +  ++   K ++  P+  +I ++   + 
Sbjct: 177 NLQALNDQQRKFSYIQIDADNYLDKVKVNVKSVKDFYNNQKASFFDPQKVKIDFVELSLE 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +  K I+I++DEL   YE  K+++ +   R  + ++   Q+ A +    +  G  F +LA
Sbjct: 237 KIAKNIKINDDELFNFYEDEKDRFTTEGERKAQHILVQTQETAKKVVGLINAGGDFAKLA 296

Query: 301 EEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +E  +          LG F+K  +        +F + ++G+ +  +   FGY I  ++ I
Sbjct: 297 KEYSEDTGSKDDAGDLGFFTKGVMV-PEFETKVFGM-QEGEVSGAVKSEFGYHIIKLNKI 354

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           KP    SF+  + ++       +  + + +   +L   LA   S++E+S +  +V     
Sbjct: 355 KPGSVKSFESARSELTKLYTQNQVQKSLYDLTDQLAN-LAYEVSLEEVSDQMNLVVNTTQ 413

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
                  D + K+     + + +L +             + L    ++ V++KE    R 
Sbjct: 414 FFAKNTNDYE-KKFVDAAFSDVVLNK-------GENSEIIELSKDKFIVVRLKEKTVKRQ 465

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           +  +EV  ++ K    +     V + A  +V   +    +   +             + R
Sbjct: 466 KTFDEVKDEINKHLTVLLAKTFVDNIAKDIVASLNNNDDSVNKLMDKNQLKWNDVGWVER 525

Query: 537 MDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
              +        +++VF+       + V         S VV  ++  K    +       
Sbjct: 526 DSKKTDV---TVVNKVFALSKPNNGDTVYSAQSLGRSSAVVISLSAVKTSDSKPSKGLER 582

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTV 618
            L    + ++  +++  L++   + V
Sbjct: 583 SLLSFESNEMFAAILKTLRANAEIKV 608


>gi|312961785|ref|ZP_07776283.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens WH6]
 gi|311284044|gb|EFQ62627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens WH6]
          Length = 624

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 100/640 (15%), Positives = 230/640 (35%), Gaps = 41/640 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59
           ML+ IR  S+ W+AK  + ++       G+      S +    V  V  + +       +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAIFQASGTNKQDVAKVNGEAITQPELSQA 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
              +   + Q++G   ++       L    L  L+    L Q   D         +   I
Sbjct: 61  VDMQRRQLMQQLGKDFDASLLDEKLLRDAALKGLIDRKLLLQGAADSKFGFSEAALDQVI 120

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            ++P F   D KF+ + F   + + G +  ++    T+ +    V     G    ++  +
Sbjct: 121 LQTPEFQ-VDGKFNAERFDQVIRQLGYSRLQFRQMLTQEMLIGQVRAGIAGSGFVTDAEV 179

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
               R   + R  D+  +N +  PA    ++  +  +++++   +  P+   I Y+    
Sbjct: 180 LAFARLEKQTR--DFATVNLKANPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKK 237

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSL 290
                ++ + +DELQA YE  KE     E R    ++            + + +E    L
Sbjct: 238 SSFFDQVTVKDDELQAAYE--KETANLAEQRRAAHILIEVNDKVTEAQAKAKIEEIQARL 295

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            KG+KF  LA+E  +     + G    F+   + D     ++++L K+   +  +  +FG
Sbjct: 296 AKGEKFDALAKEFSQDPGSANNGGDLGFAGPGVYDPDFETALYAL-KQDQVSAPVRSTFG 354

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           + +  +  ++     +F  +K  +  +++  +  ++  E  K+LE+     + + + +  
Sbjct: 355 WHLIKLLGVEAPEVPTFASLKDKLTRELKAQQVEQRFVEATKQLEDAAFEASDLAQPASD 414

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465
            K+           G +        +     ++   F  +  D  +    + L   + + 
Sbjct: 415 LKLTVHTSAPFGREGGE-------GVAANRAVVTAAFSPEVLDEGANSTAIELDPETIIV 467

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           ++ KE        LE V   ++      + +    + A++L+                 G
Sbjct: 468 LRAKEHRKPAQLPLESVAAAIRTQMAKERASAAAKTHADELIASLRDGKTPLNQPVD--G 525

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--FKVT 577
            +   T   +R     +      +  +F  P    K  P      + +G   +V    V 
Sbjct: 526 QAWKVTEAASRS---AEAVDPAVLQALFRMPKPAAKDKPTFTTVTLADGSLVIVRLNGVN 582

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +     +EK ++  +L   + +    +    L++Q  + 
Sbjct: 583 EASAPTDEEKAQYRRFLASRVGQQDFAAYRKQLETQADIK 622


>gi|84500963|ref|ZP_00999198.1| hypothetical protein OB2597_02472 [Oceanicola batsensis HTCC2597]
 gi|84391030|gb|EAQ03448.1| hypothetical protein OB2597_02472 [Oceanicola batsensis HTCC2597]
          Length = 612

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 131/594 (22%), Positives = 257/594 (43%), Gaps = 24/594 (4%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
                 V SVG Q++    +  + + EL  +  + G  ++ E+A+++G+D+++L  L++ 
Sbjct: 30  TGTVRNVGSVGDQEITVQEYGRTLQSELRAMEAQTGEAISLEQAQAMGIDRRVLSRLLTN 89

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
           A  D   + +GL      +   +   P F G D +FS D +   + R G+   E+ D   
Sbjct: 90  AAFDLEADRVGLSIGDETLVRLVRDIPAFRGVDGQFSRDGYEFAIERSGLTVGEFEDGIR 149

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQ 215
           K  +R  + G    G    +  LD    ++ E R V +  + +  +   + +PS   L  
Sbjct: 150 KETARALLQGAVFSGRALPDAYLDTVLNYFAERRRVTWARVESSQLDGESFEPSEEDLRA 209

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
            +++  +++  PE KRI+Y          ++EI  D L+ EYE   ++Y  PE R VE+L
Sbjct: 210 LYDELIEDFTLPERKRITYAWLTPEMILDQVEIDEDLLRQEYEARSDQYNRPERRLVERL 269

Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           ++ +Q  A EA   L+ G+  F  L EE+G +LSDI +G  S+  +   +  D +F+ A+
Sbjct: 270 IYADQGRAAEAADRLENGEADFETLVEERGLTLSDIDMGDVSRADLG--AAGDPVFA-AE 326

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G+    +    G     V+ I  +   +F+E   D+  ++   +A  +V  + +  E+ 
Sbjct: 327 SGEIVGPVETDLGPAFFRVNGILSAEETTFEEALPDLRQELAFDRARRRVANEAEPAEDM 386

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           LA G +++E++       + L  VD+A    +G  +AA    +    R+    D  +   
Sbjct: 387 LAGGATLEELAAE---TDMRLGSVDWAEGQSEG--IAAYEGFDAAAARL----DETAYPE 437

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
            + L DG    +++ E +P      E V   V+  W+T +T + + ++A + + +  +E 
Sbjct: 438 VMRLTDGGIFAMRLDEVLPPEPAPFENVRERVRNIWETRQTMQRLRTQAGEHI-DRLRES 496

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
            +F     +LG  + T   + R  +         +  VF      +        +  V  
Sbjct: 497 ADFD----SLGLEVQTEEALTRQGSVMGA-PEAFVETVFQMEEGQIAMVDGFGAVLIVRL 551

Query: 575 KVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                      +     + L+Q +     +D+       ++S+  V +    I 
Sbjct: 552 DEVLPPNPEDPDTAAMRNNLSQQLHSSVTQDVNRLFTQDIRSRAGVELDQEAIN 605


>gi|319941578|ref|ZP_08015904.1| hypothetical protein HMPREF9464_01123 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804948|gb|EFW01790.1| hypothetical protein HMPREF9464_01123 [Sutterella wadsworthensis
           3_1_45B]
          Length = 633

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 111/636 (17%), Positives = 247/636 (38%), Gaps = 32/636 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R+  R W+  I +V +   F++ G+          +++V VG   +   +F  + 
Sbjct: 1   MLQAFREHKR-WLMVIAMVFIIPSFVVTGIYSYNRMTQSDNSIVKVGEVSITPENFDLAK 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+L  + Q++G   ++    +    + +L  L+  A ++Q +    +     +    I 
Sbjct: 60  RQQLERLRQEMGESFHASLLDTPQAREDLLRMLMDEAAINQVVAKNHISVSEAQAVALIK 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +      D KFS + +   L  +G ++++++      L++  VV            L +
Sbjct: 120 NADALK-VDGKFSAERYEQFLRSQGKSDQQFVMEIRNDLAKEAVVSGVSATYPVPKALTE 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q      E RSV  +VL           ++  +  ++  +  ++ +PE+ +  Y++F   
Sbjct: 179 QFYEILTEERSVRTLVLPADDYLDKVAVTDEEIKAYYNAHLKDFLSPEHIKAQYVVFSPD 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSLKKG 293
               + + S D+L+  YE+NK+++  PE R    ++          +K+A+E    +K  
Sbjct: 239 AFSNQ-KASLDDLKTFYEQNKQRWTVPEERRASHILIEFGDDKEAARKKAEELANEVKAD 297

Query: 294 KK-FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
              F +LA+    + G +     L  F +  +   +  D++F+ AKKGD    I   FG+
Sbjct: 298 PSKFAELAKANSVDTGSAEQGGDLSFFGRGVMTK-AFEDAVFN-AKKGDIVGPIETEFGW 355

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRR 407
            + +V++I P+    F++VK +I  +    +A  +           +     +++  + +
Sbjct: 356 HVIYVTDIHPAAVEPFEDVKSEIEREYAQQQAIREFSTHADEFTNLVYEQSDTLEPAAAK 415

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSYMW 465
             +       V   G         +    E +   +FG +    K +T  + +     + 
Sbjct: 416 FGLKVETADFVTRNGVT---DPELSQIITEHVAESLFGTEALKEKRNTSAIEVSGNRLVS 472

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
            ++ E  P  +R L+EV   +    K  K    ++ +A Q  L   ++ K+    G  + 
Sbjct: 473 ARVVEYFPEAERPLDEVKGLITDALKRQKAG-AMAIEAGQAKLASVQQAKSVDGFGDEMW 531

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF-KVTNSKVGPV 584
            S        R     +    +    V +  + +     + +G   V++ K         
Sbjct: 532 IS-------RRAPQNQEVTVVNAALAVPTAKLPIYTNAVLADGSYVVIYVKEAKKHEAKP 584

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           ++       L+ +  +      +  L+    V V  
Sbjct: 585 EDLAGITRELSSVYGESDRRGYLDALEHSLGVVVQR 620


>gi|104781017|ref|YP_607515.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas entomophila L48]
 gi|95110004|emb|CAK14709.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
           entomophila L48]
          Length = 619

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 107/639 (16%), Positives = 227/639 (35%), Gaps = 44/639 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V   + G      + + S     V  Q +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L +  L  L+    L Q  ED         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDEKMLREAALKGLIDRKLLLQGAEDAKFAFSEAALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KFS + F S + + G    ++ +   + +    +     G    ++  ++
Sbjct: 121 QTPEFQ-VDGKFSAERFDSVIRQMGYGRMQFREMLAQEMLIGQLRTGLAGSSFVTDKQVE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R    +       PA    S+  +   ++++   +  P+   I YI     
Sbjct: 180 AFARLEKQTRDFAALTFKAD--PAAVKVSDEEVKAHYDQHAKEFMTPDQVVIDYIELKKS 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               ++++++DEL+A YEK        E R    ++            +   +E  Q L+
Sbjct: 238 AFFDQVKVNDDELKALYEKEIANLG--EQRHAAHILIEVNDKTTDAQAKARIEEIQQRLE 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F +LA+   +     + G    F+   + D +  D+++ L K    +  +   FGY
Sbjct: 296 KGEDFAKLAKAFSQDPGSANAGGDLGFAGPGVYDPTFEDALYKLNKD-QVSAPVRTQFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     SF  +K  +  +++  +  ++  E  K+LE+     + + + ++  
Sbjct: 355 HLVKLLGVQAPDVPSFASLKDKLTRELKTQQVEQRFVEATKQLEDAAFEASDLVQPAQDL 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
            +           G +        I     ++   F +   +  +  + + L   + + +
Sbjct: 415 GLKVQTSAAFGREGGE-------GITANRAVIQAAFSEQVLEESANSNGIELDPETVVVL 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++KE        LE V  ++ +     K   E+ +KA++L+    +         K  G 
Sbjct: 468 RVKEHRKPEQLPLEAVAKNISQHLAKEKATAELKAKADKLIAGLREGS------VKAAGQ 521

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFK---VTN 578
           S        R            +  VF       K  P     +    S VV +   V  
Sbjct: 522 SWKVQEAATRG---QDGIDPAELQAVFRMAKPESKDKPVYGSVVLGDGSLVVLQLKGVNE 578

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                 +EK +   YL          +    L+    +T
Sbjct: 579 GAAATDEEKAQIRRYLASRAGSQDFAAYRKLLEGSADIT 617


>gi|126439578|ref|YP_001059347.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           668]
 gi|126219071|gb|ABN82577.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           668]
          Length = 644

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 99/646 (15%), Positives = 230/646 (35%), Gaps = 43/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + L+VL     I G+         S+ V +V   K+  + F  + 
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVL-PGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTL 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   + 
Sbjct: 60  RQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D  F  + +   LA +G+   +Y +     L+   +    V        
Sbjct: 120 SDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +  +      + R V  +VL +    A   P++A ++ +++ +K  +   E   I Y+++
Sbjct: 180 VARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + S+ +++  Y+ N   Y +     V  +                + +A++
Sbjct: 240 SQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAARAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               +K     F Q+AE+  +          LG  ++      +  D      KK + + 
Sbjct: 300 LLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEISG 359

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+ G FG+ I   +++KP+      EVK  IA  +R   A++   ++ +     +     
Sbjct: 360 VVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKAK 419

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+   + + K+    +     + +        +     + L  VF  D   + ++T  + 
Sbjct: 420 SLQPAADKYKL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAID 476

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           + + + +  ++    P+    L+ +   V+      + A          + E  K  K+ 
Sbjct: 477 IGNNTLIAARVTNHQPSTVPALDAIKDQVRAKVVADEAARLAQQAGEAKLAELRKS-KST 535

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
                    S            +        +S ++    + +  +   +     Y +F+
Sbjct: 536 AGFAAPDKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFR 585

Query: 576 VTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           V +       +  +       L Q+  +    + +A L+++  V +
Sbjct: 586 VNSVVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631


>gi|121601506|ref|YP_993264.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           SAVP1]
 gi|124383444|ref|YP_001029291.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           NCTC 10229]
 gi|126449228|ref|YP_001080774.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           NCTC 10247]
 gi|167738127|ref|ZP_02410901.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia
           pseudomallei 14]
 gi|217421364|ref|ZP_03452868.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 576]
 gi|237812671|ref|YP_002897122.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           MSHR346]
 gi|251766653|ref|ZP_04819742.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           PRL-20]
 gi|254179433|ref|ZP_04886032.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1655]
 gi|254198164|ref|ZP_04904586.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei S13]
 gi|254297318|ref|ZP_04964771.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           406e]
 gi|254358198|ref|ZP_04974471.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           2002721280]
 gi|121230316|gb|ABM52834.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           SAVP1]
 gi|124291464|gb|ABN00733.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           NCTC 10229]
 gi|126242098|gb|ABO05191.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           NCTC 10247]
 gi|148027325|gb|EDK85346.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           2002721280]
 gi|157806973|gb|EDO84143.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           406e]
 gi|169654905|gb|EDS87598.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei S13]
 gi|184209973|gb|EDU07016.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1655]
 gi|217395106|gb|EEC35124.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 576]
 gi|237505475|gb|ACQ97793.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           MSHR346]
 gi|243065067|gb|EES47253.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           PRL-20]
          Length = 644

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 99/646 (15%), Positives = 230/646 (35%), Gaps = 43/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + L+VL     I G+         S+ V +V   K+  + F  + 
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVL-PGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTL 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   + 
Sbjct: 60  RQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D  F  + +   LA +G+   +Y +     L+   +    V        
Sbjct: 120 SDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +  +      + R V  +VL +    A   P++A ++ +++ +K  +   E   I Y+++
Sbjct: 180 VARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + S+ +++  Y+ N   Y +     V  +                + +A++
Sbjct: 240 SQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               +K     F Q+AE+  +          LG  ++      +  D      KK + + 
Sbjct: 300 LLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEISG 359

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+ G FG+ I   +++KP+      EVK  IA  +R   A++   ++ +     +     
Sbjct: 360 VVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKAK 419

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+   + + K+    +     + +        +     + L  VF  D   + ++T  + 
Sbjct: 420 SLQPAADKYKL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAID 476

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           + + + +  ++    P+    L+ +   V+      + A          + E  K  K+ 
Sbjct: 477 IGNNTLIAARVTNHQPSTVPALDAIKDQVRAKVVADEAARLAQQAGEAKLAELRKS-KST 535

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
                    S            +        +S ++    + +  +   +     Y +F+
Sbjct: 536 AGFAAPDKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFR 585

Query: 576 VTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           V +       +  +       L Q+  +    + +A L+++  V +
Sbjct: 586 VNSVVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631


>gi|21241842|ref|NP_641424.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107222|gb|AAM35960.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 656

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 107/672 (15%), Positives = 236/672 (35%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L +PFL   + ++     G++ V  V              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPAWWKSAPSWW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +     S     ++LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRTRFEQARMQERQRQGEKFDPRSFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   IA  P F   D KFS D + + LA+        ++       
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+  +L        A  S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATTSEFERLLKLMGETRDVELAMLPPPA-ADAAPVSDAQIKQWYD 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +              L+  YE  K ++  PE R    ++  
Sbjct: 238 GHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILIS 297

Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
              +A     +  K           G  F  LA+   +          LG   K  +   
Sbjct: 298 AGTDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++FS+ K G+    I   FGY +  +  +K     SF++V+  +A +     A + 
Sbjct: 358 -FEDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + +    T+++  +++  +    L     +       + + +     +L  
Sbjct: 416 FADVSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 468

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V    +  +  +  +
Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAA 528

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           + A+ L+    K G+  + +  +    +     + R               +FS P    
Sbjct: 529 AAADALLARVQK-GETLQALADSEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
               +     +G  + VF ++ +  G     P +++      L+Q+   +   + +  ++
Sbjct: 585 GKPSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMR 644

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 645 KRYKIQIEEAQL 656


>gi|53723660|ref|YP_103105.1| peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei ATCC
           23344]
 gi|67642012|ref|ZP_00440775.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia mallei GB8
           horse 4]
 gi|254177616|ref|ZP_04884271.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           ATCC 10399]
 gi|254200054|ref|ZP_04906420.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           FMH]
 gi|254206388|ref|ZP_04912740.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           JHU]
 gi|52427083|gb|AAU47676.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia mallei
           ATCC 23344]
 gi|147749650|gb|EDK56724.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           FMH]
 gi|147753831|gb|EDK60896.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           JHU]
 gi|160698655|gb|EDP88625.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           ATCC 10399]
 gi|238523056|gb|EEP86497.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia mallei GB8
           horse 4]
          Length = 644

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 98/647 (15%), Positives = 231/647 (35%), Gaps = 45/647 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +   FL+++ +P   I G+         S+ V +V   K+  + F  +
Sbjct: 1   MLDFFRNHQR--LMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q++    Q +G   +++   +    +++LD L+    L    + + L    G V   +
Sbjct: 59  LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSTSDGAVRQTL 118

Query: 120 ARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P        D  F  + +   LA +G+   +Y +     L+   +    V       
Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +  +      + R V  +VL +    A   P++A ++ +++ +K  +   E   I Y++
Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEAD 284
           +         + S+ +++  Y+ N   Y +     V  +                + +A+
Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAE 298

Query: 285 EAFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           +    +K     F Q+AE+  +          LG  ++      +  D      KK + +
Sbjct: 299 QLLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEIS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+ G FG+ I   +++KP+      EVK  IA  +R   A++   ++ +     +    
Sbjct: 359 GVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            S+   + + K+    +     + +        +     + L  VF  D   + ++T  +
Sbjct: 419 KSLQPAADKYKL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++    P+    L+ +   V+      + A          + E  K  K+
Sbjct: 476 DIGNNTLIAARVTNHQPSTVPALDAIKDQVRAKVVADEAARLAQQAGEAKLAELRKS-KS 534

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                     S            +        +S ++    + +  +   +     Y +F
Sbjct: 535 TAGFAAPDKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIF 584

Query: 575 KVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +V +       +  +       L Q+  +    + +A L+++  V +
Sbjct: 585 RVNSVVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631


>gi|330972584|gb|EGH72650.1| periplasmic folding chaperone [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 627

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 99/643 (15%), Positives = 234/643 (36%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +       +SQ++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KF+ D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQAPEFQ-VDGKFNADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             ++   R   + R    + L      +    ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--TSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+++ +++LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     + G    ++ + + D +  +++++L K    +  +  
Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVYDPAFEEALYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     SF  +K  + N ++     +K  E  K+LE+     + + + 
Sbjct: 355 DFGWHLIKLLGVEAPSVPSFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        +     ++   F  +  +  +  +T+ L   +
Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGANSNTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   LE V + ++        +    +K   L+    ++GK      K
Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGL-RDGK-IPLAAK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFK-- 575
             G        + R     +      +  +F  P    K  P       +  S+V+ +  
Sbjct: 526 QEGRDWKVMEAVTRS---QEGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIVRLN 582

Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L+    +    +  A L+S+  + 
Sbjct: 583 GVNQAAAPTDAEKAQYRRFLSSREGQQDFAAYRAQLESKAKIE 625


>gi|167646732|ref|YP_001684395.1| rotamase family protein [Caulobacter sp. K31]
 gi|167349162|gb|ABZ71897.1| rotamase family protein [Caulobacter sp. K31]
          Length = 655

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 122/641 (19%), Positives = 252/641 (39%), Gaps = 23/641 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML   R  +++ +A +   +L V F ++G+SD      G   + + G +    + F   +
Sbjct: 1   MLAGFRSFAKSPLAVVLFGLLIVSFAVFGISDVFRHPPGKWVIAA-GSRDTTPADFKARF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH----GRVW 116
           +        + G  +  + A   G+D+++L  L    +L + I  +G+          + 
Sbjct: 60  ESYRKQQQAQ-GQTLTPDLAVEHGVDRQMLTQLALQESLAELIRKMGVRPSDKLVGDTLR 118

Query: 117 GEIARSPLFHGK----DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
            ++A  P         + KF   ++ + LA+  +    Y       +++  +       +
Sbjct: 119 EQLASLPPGQRPFDPINGKFDSKMYAALLAQNDLTPARYEASLRDEIAQAHLFSAVATSL 178

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
           R   +       +  E R +    +N   V   A P++A L  + +++  +   PE + +
Sbjct: 179 RAPRIYSALQAAYALEGRDLAAFAINPATVEKPAPPTDAQLQAFMKEHAADLTRPETRVL 238

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           S   F     E  + +   ++   Y   K+   + E R+  Q+V P+ K A    Q L K
Sbjct: 239 SVARFSAKALENSVTVPEADVVKTYNFRKDTLGTAETRSFVQIVAPDAKAAAVIAQRLAK 298

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           G +   +A   GK    I   +  K  +PD  +AD++F+L   G  +  I G  G  +  
Sbjct: 299 GDQPAVVASAFGKQPVFID--TKPKSALPDRKVADAVFALT-AGQVSAPITGDLGVSVVK 355

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           ++ I P+   S +  +  I  +++   A  K  E  +  ++    G S+ + + +   + 
Sbjct: 356 LTKITPAAMPSLESQRPAIEAELKAQAAQAKAYEQTQAYQDAHDAGASLIDAATKAGALV 415

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
           +    +   G D  G+ V  +      +   F       +   +    G Y  V++++ I
Sbjct: 416 LTTSPIAATGVDQTGQPVPGL--TPDAVKAAFELPSG-GESELIEAGKGEYFAVRVEKVI 472

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           P+    L E+   + + W   K  E + +KA+ L  E  K+G++   +  + G  +    
Sbjct: 473 PSAMPALAEIRGPLAQQWMVTKLLEAMKAKADAL-GERVKKGESLEAVAASAGTKVQRVP 531

Query: 533 QINRMDNEN-KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
            INR +    +  G D +   F     +        G  ++V +V     G   +  +  
Sbjct: 532 NINRENARQFQGLGRDLLIATFGAKPGVPFTARAPQG-GFLVAQVEKVHPGAPMQIAQIT 590

Query: 592 SYL----TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
             +    +Q + +D+ DS  A  K+Q    V+ NL +  + 
Sbjct: 591 QAMRGQTSQGLMRDVADSAQAAAKAQLKTKVNLNLAREAIG 631


>gi|66044996|ref|YP_234837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
 gi|63255703|gb|AAY36799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
          Length = 627

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 99/643 (15%), Positives = 234/643 (36%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +       +SQ++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADARFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KF+ D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFNADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             ++   R   + R    + L      +    ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--TSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+++ +++LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     + G    ++ + + D +  +++++L K    +  +  
Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVYDPAFEEALYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     SF  +K  + N ++     +K  E  K+LE+     + + + 
Sbjct: 355 DFGWHLIKLLGVEAPSVPSFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        +     ++   F  +  +  +  +T+ L   +
Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGANSNTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   LE V + ++        +    +K   L+    ++GK      K
Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGL-RDGK-IPLAAK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFK-- 575
             G        + R     +      +  +F  P    K  P       +  S+V+ +  
Sbjct: 526 QEGRDWKVMEAVTRS---QEGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIVRLN 582

Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L+    +    +  A L+S+  + 
Sbjct: 583 GVNQAAAPTDAEKAQYRRFLSSREGQQDFAAYRAQLESKAKIE 625


>gi|330952802|gb|EGH53062.1| periplasmic folding chaperone [Pseudomonas syringae Cit 7]
          Length = 627

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 97/643 (15%), Positives = 230/643 (35%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +       +SQ++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             ++   R   + R    + L      +    ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--TSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+++ +++LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     + G    ++ + + D +  +++++L K    +  +  
Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVYDPAFEEALYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     +F  +K  + N ++     +K  E  K+LE+     + + + 
Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKSKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        +     ++   F  +  +  +  +T+ L   +
Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGANSNTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   LE V + ++        +    +K   L+    +         K
Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGLREGKIPLA--AK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFK-- 575
             G        + R     +      +  +F  P    K  P       +  S+V+ +  
Sbjct: 526 QDGRDWKMMEAVTRS---QEGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIVRLN 582

Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L     +    +  A L+S+  + 
Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASREGQQDFAAYRAQLESKAKIE 625


>gi|218781789|ref|YP_002433107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763173|gb|ACL05639.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 624

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 114/639 (17%), Positives = 242/639 (37%), Gaps = 43/639 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML ++R+ + +W+ KI L ++ + F+  +G        +  + +  V  + +  ++F   
Sbjct: 1   MLSMMREHATSWIIKILLGIIVLVFVFSFG---YSSFQNRGNRLAVVNGETISRNTFERM 57

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +K       +K G   + +      L + + D+LV    L Q   D+G++     +  +I
Sbjct: 58  YKNVYDYNREKFGDSFDYDL-----LRQNVFDDLVDNVLLLQHARDLGMQVTEDELVQDI 112

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
           A++ +F     +F    +   L+R G+  K+Y     + +  T +    +   + S+   
Sbjct: 113 AQTQVFQTSSGQFDPKRYEYILSRSGVTSKDYEAEKARNMLSTKIRSYLMAMAQVSDEEA 172

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
            Q   +  +  S+ Y++        +   +   +  +++ +  +Y      ++SY+ F+ 
Sbjct: 173 RQWYNWDAKQVSMKYVLFEPSTFTDVVA-TEDQIQAYYDAHSADYETLPMAKVSYLYFNP 231

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAF 287
            +  K++ I  +E++  Y+ N + Y+  +      ++    K+            A E  
Sbjct: 232 KDFLKEVSIPQEEIELFYDDNLDSYYEDQQVHARHILISLAKDAPEEKAAEALKKAQEIE 291

Query: 288 QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
              K G+ F +LA+E      + +   LGSF +  +      D+ F+L   G+ +  +  
Sbjct: 292 AKAKAGEDFAELAKEFSDGPTAKNGGDLGSFPRGRMVKP-FEDAAFAL-NAGEISDPVRT 349

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ I  V  IK + T    EV+  I +++    A ++     +   + L    S  ++
Sbjct: 350 DFGFHIIKVEEIKEARTKELSEVEDSIRSKLAADVALDEAYNAAEAAFDNL---LSDMDM 406

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           ++      ++L   D+  +    +  A +   +++   VF  D        V   D  + 
Sbjct: 407 AKAAADAGVELKTTDYFTE----QGPAGVANPQEMADEVF--DMYKDSFSDVLQFDDGFY 460

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            V + +  PA   +LEEV   V  D K    A+    KA +  LE  K GK+  D     
Sbjct: 461 IVWMLDKKPAIIPELEEVKAKVAADVKKEVMAQAAIDKAAEF-LEEVKGGKSMEDAAAAY 519

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM--VKCFPIENGLSYVVFKVTNSKVG 582
             ++  T    R            ++               P+E      V  V   K  
Sbjct: 520 NVTVKNTGFFKRGGYIPDLGDEPAVASAAFLADAANPYPDAPVEGVKGVFVTCVLEEKYP 579

Query: 583 PVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVT 617
                      + Q +       +L+  +  L+ +  V 
Sbjct: 580 EADGFADQKESIKQRLLWGKRSRVLEDTLDVLRERGEVK 618


>gi|319763570|ref|YP_004127507.1| ppic-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans BC]
 gi|330824229|ref|YP_004387532.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans K601]
 gi|317118131|gb|ADV00620.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans BC]
 gi|329309601|gb|AEB84016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans K601]
          Length = 640

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 108/646 (16%), Positives = 235/646 (36%), Gaps = 47/646 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IRK ++ WV  +  +++   F++ G+    F   GS  V  V  + +  + + N+ 
Sbjct: 1   MLESIRKHTK-WVMGLLFLLIIPSFILVGIDRNYFG-GGSPVVARVDGKDITQADWDNAH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E   I  +    ++++   S       L+ LV    L    + + +     R+  E+ 
Sbjct: 59  RMESDRIRAQSPG-IDAKLLDSPQARYATLERLVRDRVLQVAAQKMHMLTSDARLARELQ 117

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     + + +    +G+  +         +S + V+G  V        
Sbjct: 118 SIPQIAALKRPDGTLDAEAYRALAGAQGLTPEGLEARVRHDISVSQVMGSVVASAFAGPA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               A    F+ R +     +     +    ++A L  +++ +   ++ PE   + Y++ 
Sbjct: 178 ESKLALDALFQRREIQVARFDPSAFVSKVAVTDADLEAYYKAHLAKFQQPEQATVEYVVL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-- 295
           D+   +  I ++ D+L+  Y++N  +    E R    ++    K+A  A +   K K   
Sbjct: 238 DLDAVKAGITLNEDDLRTYYKENLSRLSGKEERRASHILVNAAKDAPAAEREKAKAKAQE 297

Query: 296 -----------FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                      F ++A    ++ G + S   LG F    +      D++FSL KKG+ + 
Sbjct: 298 LLAEVRKAPGRFAEIARKESQDTGSAASGGDLGFFGHGAMVKP-FEDAVFSL-KKGEISD 355

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FGY +  ++++K     SF+E++  +  ++R  +A  K  E  +     +     
Sbjct: 356 VVETDFGYHVIMLTDVKTPRQPSFEELRPSLEAELRQQQAQRKFAEVAETFANTVYEQPD 415

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+  ++ + K+       V       +   +A      +LL  +F  D   SK +T  + 
Sbjct: 416 SLQPVADKLKLKIHTATGVTRTSAPGEKGALA----NPRLLEALFQPDSVQSKRNTEAIE 471

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           + + +    +I    PA    L++    V+  +   K+AE    +               
Sbjct: 472 IGNSTLAAARITAYQPAMTLPLDKAREQVRSLYVADKSAEFARQEGQ----------VRL 521

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
                +   +   +  +    +  +      +      P + +  +   +  G  Y V K
Sbjct: 522 AAWKASPDGAAGLSAPVTVSRDRPQNQPRAVVDAALRAPTDKLPVWTGVDLAGQGYAVLK 581

Query: 576 VTNSKVGPVQEKDKFISYLTQMMN---KDLLDSVIAYLKSQYSVTV 618
           V         ++        Q +         +    LK ++ V +
Sbjct: 582 VNRIVPRDAADEATARMEREQYLQLWVSAEAQAYYELLKQRFKVQI 627


>gi|126452826|ref|YP_001066614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1106a]
 gi|242317337|ref|ZP_04816353.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1106b]
 gi|126226468|gb|ABN90008.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1106a]
 gi|242140576|gb|EES26978.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1106b]
          Length = 644

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 232/647 (35%), Gaps = 45/647 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +   FL+++ +P   I G+         S+ V +V   K+  + F  +
Sbjct: 1   MLDFFRNHQR--LMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   +
Sbjct: 59  LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118

Query: 120 ARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P        D  F  + +   LA +G+   +Y +     L+   +    V       
Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +  +      + R V  +VL +    A   P++A ++ +++ +K  +   E   I Y++
Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEAD 284
           +         + S+ +++  Y+ N   Y +     V  +                + +A+
Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAE 298

Query: 285 EAFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           +    +K     F Q+AE+  +          LG  ++      +  D      KK + +
Sbjct: 299 QLLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEIS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+ G FG+ I   +++KP+      EVK  IA  +R   A++   ++ +     +    
Sbjct: 359 GVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            S+   + + K+    +     + +        +     + L  VF  D   + ++T  +
Sbjct: 419 KSLQPAADKYKL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++    P+    L+ +   V+      + A          + E  K  K+
Sbjct: 476 DIGNNTLIAARVTNHQPSTVPALDAIKDQVRAKVVAGEAARLAQQAGEAKLAELRKS-KS 534

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                     S            +        +S ++    + +  +   +     Y +F
Sbjct: 535 TAGFAAPDKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIF 584

Query: 575 KVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +V +       +  +       L Q+  +    + +A L+++  V +
Sbjct: 585 RVNSVVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631


>gi|53719046|ref|YP_108032.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei K96243]
 gi|76809896|ref|YP_333865.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1710b]
 gi|254189176|ref|ZP_04895687.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254259824|ref|ZP_04950878.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1710a]
 gi|52209460|emb|CAH35412.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei K96243]
 gi|76579349|gb|ABA48824.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1710b]
 gi|157936855|gb|EDO92525.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254218513|gb|EET07897.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1710a]
          Length = 644

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 232/647 (35%), Gaps = 45/647 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+  R   R  +   FL+++ +P   I G+         S+ V +V   K+  + F  +
Sbjct: 1   MLDFFRNHQR--LMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   +
Sbjct: 59  LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118

Query: 120 ARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P        D  F  + +   LA +G+   +Y +     L+   +    V       
Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +  +      + R V  +VL +    A   P++A ++ +++ +K  +   E   I Y++
Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEAD 284
           +         + S+ +++  Y+ N   Y +     V  +                + +A+
Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAARAKAE 298

Query: 285 EAFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           +    +K     F Q+AE+  +          LG  ++      +  D      KK + +
Sbjct: 299 QLLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEIS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+ G FG+ I   +++KP+      EVK  IA  +R   A++   ++ +     +    
Sbjct: 359 GVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            S+   + + K+    +     + +        +     + L  VF  D   + ++T  +
Sbjct: 419 KSLQPAADKYKL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++    P+    L+ +   V+      + A          + E  K  K+
Sbjct: 476 DIGNNTLIAARVTNHQPSTVPALDAIKDQVRAKVVAGEAARLAQQAGEAKLAELRKS-KS 534

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                     S            +        +S ++    + +  +   +     Y +F
Sbjct: 535 TAGFAAPDKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIF 584

Query: 575 KVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +V +       +  +       L Q+  +    + +A L+++  V +
Sbjct: 585 RVNSVVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631


>gi|289679420|ref|ZP_06500310.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           syringae FF5]
 gi|330897791|gb|EGH29210.1| periplasmic folding chaperone [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330939710|gb|EGH43005.1| periplasmic folding chaperone [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 627

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 99/643 (15%), Positives = 233/643 (36%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +       +SQ++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             ++   R   + R    + L      +    ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--TSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+++ +++LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     + G    ++ + + D +  +++++L K    +  +  
Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVYDPAFEEALYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     +F  +K  + N ++     +K  E  K+LE+     + + + 
Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        +     ++   F  +  +  +  +T+ L   +
Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGANSNTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   LE V + ++        +    +K   L+    ++GK      K
Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGL-RDGK-IPLAAK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFK-- 575
             G        + R     +      +  +F  P    K  P       +  S+V+ +  
Sbjct: 526 QEGRDWKMMEAVTRS---QEGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIVRLN 582

Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L     +    +  A L+S+  + 
Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASREGQQDFAAYRAQLESKAKIE 625


>gi|167836273|ref|ZP_02463156.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia
           thailandensis MSMB43]
          Length = 644

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 97/646 (15%), Positives = 229/646 (35%), Gaps = 43/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + L+VL     I G+         ++ V +V   K+  + F    
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVL-PGLGIVGIQGFRGFFDENANVAAVNGHKITRAEFDGML 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   + 
Sbjct: 60  RQQVDQARQMLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D  F  + +   LA +G+   +Y +     L+   +    V        
Sbjct: 120 SDPVIASLKKPDGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVASAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +  +      + R V  +VL      A   P++A ++ +++ +K  +   E   I Y+++
Sbjct: 180 IARRLTELAEQQREVQPMVLKPADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + S+ +++  Y+ N   Y +     V  +                + +A++
Sbjct: 240 SQAAAVAAAQPSDIDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               +K     F Q+AE+  +          LG  ++      +  D      KK + + 
Sbjct: 300 LLAEVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEVSG 359

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+ G FG+ I   +++KP+      EVK  IA  ++   A++   ++ +     +     
Sbjct: 360 VVQGDFGFHILKATDVKPAVVKPLAEVKDSIAADLKQQFAAKAFADNAEGFTSTVYEKAK 419

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+   + + K+    +     + +        +     + L  VF  D   + ++T  + 
Sbjct: 420 SLQPAADKYKL---TIQTAAVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAID 476

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           + + + +  ++    P+    L+ +   V+      + A          + E  K  K+ 
Sbjct: 477 VGNNTLIAARVTNHQPSAVPALDAIKDRVRAKVVADEAARLAKQDGEAKLAELRKS-KST 535

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
                    S            +        +S ++    + +  +   +     Y +F+
Sbjct: 536 AGFAAADKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFR 585

Query: 576 VTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           V +       +  +       L Q+  +   ++ +A L+++  V +
Sbjct: 586 VNSVVAAAPADDQRLAAAQQQLAQVYAQSETEAYLASLRARSQVKL 631


>gi|237803592|ref|ZP_04591177.1| periplasmic folding chaperone [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331025574|gb|EGI05630.1| periplasmic folding chaperone [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 627

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 101/643 (15%), Positives = 232/643 (36%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +       +SQ++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLSQQLGKDFDPALLDEKLLRESALKGLIDRKLLLQGASDAKFTFTDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            +I ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQILQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             ++   R   + R    + L      +    ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--TSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+++ +++LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     S G    ++ + + D +  +++++L K    +  +  
Sbjct: 296 QRLAKGEDFAALAKEFSQDPGSSSKGGDLGYAGKGVYDPAFEEALYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     +F  +K  + ++++     +K  E  K+LE+     + + + 
Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKGKLTDELKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        +     ++   F  +  +  S   T+ L   +
Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGSNSSTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   L  V   ++           V +K   L+    ++GK      K
Sbjct: 468 VVVVRSKEHLQPQQLPLASVADKIRAQLVKEHATAAVKAKGEALLAGL-RDGK-IPLAAK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFK-- 575
             G        + R     +      +  +F  P  + K  P       +  S+V+ +  
Sbjct: 526 QDGREWKVMEAVTRS---QEGVDPAVLQTLFRMPKPVGKDKPEFASITASDGSFVIVRLN 582

Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L     +    +  A L+S+  + 
Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625


>gi|166710933|ref|ZP_02242140.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 656

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 105/672 (15%), Positives = 235/672 (34%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L +PFL   + ++     G++ V  V              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      ++ G   +     S     ++LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERKRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   IA    F   D KFS D + + LA+        ++       
Sbjct: 120 LGAEDAGIVIGDATVREYIANIQAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+  +L    +   A  S+A + QW++
Sbjct: 179 LQQSVIPQAVADSGFATKSEFERLLKLMGETRDVELAMLPPPAM-DTAPVSDAQIKQWYD 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    ++  
Sbjct: 238 GHTQDFRQPEAVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297

Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
              +A     +  K           G  F  LA+   +          LG   K  +   
Sbjct: 298 AGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++FS+ K GD    I   FGY +  +  +K     SF++V+  +A +       + 
Sbjct: 358 -FEDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADTDKA 415

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + +    T+++  +++  +    L     +       + + I     +L  
Sbjct: 416 FADVSGKLVDHVYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGIAANPAVLRA 468

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V    +  +  +  +
Sbjct: 469 AFSETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAA 528

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           + A+ L+    K G+  + +  +    +     + R               +FS P    
Sbjct: 529 AAADALLARVQK-GETLQALAASEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
                     +G  + VF ++ +  G     P +++      L+Q+   +   + +  ++
Sbjct: 585 GKPSFGKVELDGGRFAVFAISKATPGNLKQMPAEQQTMLREQLSQIDGNNAAQAYVKQMR 644

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 645 KRYKIQIEEAQL 656


>gi|256830955|ref|YP_003159683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580131|gb|ACU91267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 632

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 109/647 (16%), Positives = 252/647 (38%), Gaps = 37/647 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+I+R+ +++W  KI   ++   F++            ++ V +V    + F  F    
Sbjct: 1   MLDILRQGAQSWGIKILFGIIIAVFVLA-FGMNRVQNDQTTVVATVNDSPILFRPFQERL 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ L +   +    + +E    +G  ++IL+ +V    + Q    +GL      +  EI 
Sbjct: 60  QRSLELARSQ-NPNLTAEILAQMGFKRQILEQMVIEELMMQQAAKLGLTVSKEELAKEIH 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  + N F    + + L    +   ++   Y + +    +        R       
Sbjct: 119 LIPAFQNESNVFDPASYQNVLRANNLTPGKFESEYMRGMVMDKLRTYVGLPGRLGEDQAR 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +     ++ Y++    +     + ++A + +++E  K NY  P   +I Y+L    
Sbjct: 179 DFYTYGRSTATISYLMYPWENYQNQVNATDARINEYYEARKANYAVPARAKIDYLLLTPA 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------AFQ 288
                  +S +E +  Y + KE++   E      L+    + ADE            A +
Sbjct: 239 TLADPAAVSPEETEKYYAEQKEQFKIEEQVKASHLLVRVDENADEESVEKAMQTIKAAQK 298

Query: 289 SLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            L  GK F ++A    E+   + +   LG F +  +      D+ F+L +KG  +  +  
Sbjct: 299 DLAAGKSFAEVAAQYTEDPSGTQTGGELGWFGRGRMVKP-FEDAAFAL-EKGAVSEPVRT 356

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  V + K +   +++ V  DIAN +   +A+E +++   +  E + +G  +D +
Sbjct: 357 QFGFHLITVEDTKSAGYENYESVASDIANIIAEDRAAEILQDRLDQALEMVLVGEPLDAV 416

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
            +   +  +++   D+  K+   +++  +    +    +F     ++    + + DG Y+
Sbjct: 417 VKAIGLK-LEIRESDYFTKNQGPRDLPGL--SPENAQVLFDLPQDITTQSPLPIADG-YL 472

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
               +E +    + LE V  ++       +  +   + A++  LE   +G+         
Sbjct: 473 LATKREQVAESVKPLEAVKAEIVAAITRDEALKVAKAAADKD-LELLLKGETL------T 525

Query: 525 GASLLTTNQINRMDNENKFFGYDGIS-QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
           GA++  T    R    N       ++ + F                 YV+ K        
Sbjct: 526 GATVKETEPFGRQGTINGLGMNQLLATKAFETKSGAWLPEAYAFPEGYVLAKAIQVTPPA 585

Query: 584 ----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV-HDNLIQR 625
                 EK+ +++ L +   +  + + +A L+++  V + +  L++ 
Sbjct: 586 DEDWAAEKELWLTSLNERAEEQTMQAFVADLRAKADVRITNPALLEN 632


>gi|134277039|ref|ZP_01763754.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           305]
 gi|134250689|gb|EBA50768.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           305]
          Length = 644

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 98/646 (15%), Positives = 229/646 (35%), Gaps = 43/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + L+VL     I G+         S+ V +V   K+  + F  + 
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVL-PGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTL 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   + 
Sbjct: 60  RQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D  F  + +   LA +G+   +Y +     L+   +    V        
Sbjct: 120 SDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +  +      + R V  +VL +    A   P++A ++ +++ +K  +   E   I Y+++
Sbjct: 180 VARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + S+ +++  Y+ N   Y +     V  +                + +A++
Sbjct: 240 SQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               +K     F Q+AE+  +          LG  ++      +  D      KK + + 
Sbjct: 300 LLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEISG 359

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+ G FG+ I   +++KP+      EVK  IA  +    A++   ++ +     +     
Sbjct: 360 VVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLTQQFAAKAFADNAEGFTSTVYEKAK 419

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+   + + K+    +     + +        +     + L  VF  D   + ++T  + 
Sbjct: 420 SLQPAADKYKL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAID 476

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           + + + +  ++    P+    L+ +   V+      + A          + E  K  K+ 
Sbjct: 477 IGNNTLIAARVTNHQPSTVPALDAIKDQVRAKVVADEAARLAQQAGEAKLAELRKS-KST 535

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
                    S            +        +S ++    + +  +   +     Y +F+
Sbjct: 536 AGFAAPDKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFR 585

Query: 576 VTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           V +       +  +       L Q+  +    + +A L+++  V +
Sbjct: 586 VNSVVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631


>gi|89069544|ref|ZP_01156888.1| hypothetical protein OG2516_03173 [Oceanicola granulosus HTCC2516]
 gi|89044879|gb|EAR50969.1| hypothetical protein OG2516_03173 [Oceanicola granulosus HTCC2516]
          Length = 613

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 127/624 (20%), Positives = 258/624 (41%), Gaps = 27/624 (4%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
            +++T    + L +LF   + +G +          T+ SVG +++    +     +++  
Sbjct: 4   NSAKTVATWVILGLLFFGLIGFGATGL---SGNVRTLGSVGEKEIAIQDYARELNRQINQ 60

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           + Q+ G  +        G+D+ +L +L+S  TLD    ++GL A  GRV  E+  SP F 
Sbjct: 61  LQQQTGQTLTFSEVEQFGIDRMVLSSLISRRTLDNEAAELGLSAGDGRVAAEVRASPAFQ 120

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
           G D  F  + +   L R G+ E EY     + L+R  +    V  +  S+   D    + 
Sbjct: 121 GLDGSFDREGYKFALDRNGLTEGEYESEIREQLARGLLQRAVVAAIPESDTYADVIAAYL 180

Query: 187 FENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
            E RS  +  L+   +   I +P++A L  ++E   D +  PE + I+Y           
Sbjct: 181 GETRSFVWAELDEDDLAEPIPEPTDAELQAYYEANLDAFTRPETREITYAALTPDMILDD 240

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQG 304
           +E+   +LQA Y++  + Y  PE R VE+L+FP++  A  A   ++ G+  F      +G
Sbjct: 241 VEVDRADLQALYDERIDDYVRPERRLVERLIFPDEDAAAAALARIESGESDFDSEVRARG 300

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
             L+DI LG  +++ +   +  +++F+ A+ GD         G  +  ++ + P+  V  
Sbjct: 301 LDLADIDLGDVAQDRLG--AAGEAVFA-ARPGDVVGPHPTDLGPALFRMNAVLPAQEVPL 357

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
           +E + D+  ++    A  +V+   + + + +A G +++++S R     ++L  + +    
Sbjct: 358 EEAEADLRVELAADVARRRVQSVGEEIADLIAGGATLEDLSER---TDLELGTLTYTDDS 414

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
             G    A    E    R      P      V L DG    +++ E        LEE   
Sbjct: 415 RDGLAAYAAFRAEAASAR------PEDFPELVELEDGGIFALRVDEVREPAPIPLEETRE 468

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
            V   W+  + +E + ++A ++     + G+    +   +         ++R        
Sbjct: 469 AVAAAWREAQRSERLLARAEEMAATIEETGRFTDQMPAPI-----AEIGVDRRAVIGGT- 522

Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN----K 600
               ++QVF       +    E+G   V  + T +            + L +       +
Sbjct: 523 PPGFVAQVFEMEEGEARAVETESGAIVVQLRGTRAAYPDNARVAADAATLAERAQGGVVQ 582

Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQ 624
           D+ D     +++   V +  + ++
Sbjct: 583 DIFDVFTRAVQTSTEVRLDQSAVE 606


>gi|326316510|ref|YP_004234182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373346|gb|ADX45615.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 642

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 105/640 (16%), Positives = 237/640 (37%), Gaps = 37/640 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IRK S+  V  +  +++   F++ G+    F  S S+ V  V    +    + N+ 
Sbjct: 1   MFESIRKHSK-VVMIVLFLLIIPSFVLVGIDRNYF-TSKSAVVARVDGHDITQDDWDNAH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E   I  +    V++    S       L+ LV    +      + L     ++   + 
Sbjct: 59  RMETDRIRAQSPS-VDARLLDSPRARYATLERLVRDRVMQAAAVKMHLVTSDAQLARTLQ 117

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     + + + +  +G+  + + ++  + LS + V+G  +G    +  
Sbjct: 118 GIPAIAALKRPDGSLDAEAYRALVGSQGLTPEGFENNVRRELSLSQVMGGVMGSAFAAQE 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               A    ++ R +     + +   A   P++  L  +++ ++  +R PE+  + Y++ 
Sbjct: 178 PARLALDSLYQRREIRVARFDAKDFAAKVTPTDDELQAYYKAHEAQFRQPEHADVQYVVL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293
           D+      I +S D+L++ Y++N E+    E R    ++    K+A  A +   K     
Sbjct: 238 DLDAVRASITLSEDDLRSYYKENLERLAGKEERRASHILINAPKDAPAADREKAKARAQA 297

Query: 294 ---------KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                      F ++A    ++ G + S   LG F +  +      D+ FS+ KKGD + 
Sbjct: 298 LLEQVRKAPNTFAEVARKNSQDSGSAPSGGDLGFFKRGDMVKP-FEDAAFSM-KKGDISD 355

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           ++   +GY I  ++++K     +F+EV+  +  + +  +A  K  E  +     +     
Sbjct: 356 LVESEYGYHIIQLNDVKTPKQPTFEEVRAKLETEAKQQQAQRKFAELAEVFSNTVYEQAD 415

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+  ++ + K+       V    +      +A      + L  +F  D   +K +T  + 
Sbjct: 416 SLQPVADKLKLKVQTASDVTRTPRPGAQGPLA----NGRFLEALFSSDSVQNKRNTEAIE 471

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
               + +  +I    PA     ++V T V++ +   ++AE    +    V  +     + 
Sbjct: 472 TAPSTLVAGRIAAYTPASTPSFDQVKTRVRELFVAERSAELARKEGEAKVAAWKAAPASA 531

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
             +G  +  S        R   +            F+G     + + +       V ++ 
Sbjct: 532 TGLGAPVTVSRDKPEGQPRPVVDAALQVNADTLPTFAGTPLGAQGYAV-----IKVDRIV 586

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                      +      +   +    +    LK ++ V 
Sbjct: 587 PRDPADPAVARQQQQQYAEAEAQAEAMAYYELLKDRFKVQ 626


>gi|145634178|ref|ZP_01789889.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           PittAA]
 gi|145268622|gb|EDK08615.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           PittAA]
          Length = 622

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 113/637 (17%), Positives = 249/637 (39%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISKNLQVTDIEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  +   +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + ++  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLNENPESKVD-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       E +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFGMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616


>gi|84622593|ref|YP_449965.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84366533|dbj|BAE67691.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 656

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 105/672 (15%), Positives = 234/672 (34%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L +PFL   + ++     G++ V  V              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +     S     ++LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   IA    F   D KFS D + + LA+        ++       
Sbjct: 120 LGAEDAGIVIGDASVRDYIANIQAFQ-VDGKFSPDKYRAALAQGTPPRTPAQFDALVRDS 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+  +L    +   A  S+A + QW++
Sbjct: 179 LQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPPPAM-DTAPVSDAQIKQWYD 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +              L+  YE+ K ++  P+ R    ++  
Sbjct: 238 GHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297

Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
              +A     +  K           G  F  LA+   +          LG   K  +   
Sbjct: 298 AGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++FS+ K GD    I   FGY +  +  +K     SF++V+  +A +     A + 
Sbjct: 358 -FEDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDKLAAEQLKADADKA 415

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + L    T+++  +++  +    L     +       + + +     +L  
Sbjct: 416 FADVSGKLVDQLYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 468

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V    +  +  +  +
Sbjct: 469 AFSETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALLLDKVRDKVTAAIRADRAEKAAA 528

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           +     +L   + G+  + +  +    +     + R               +FS P    
Sbjct: 529 AA-ADALLARVQRGETLQALAASEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
                     +G  + VF ++ +  G     P +++      L+Q+   +   + +  ++
Sbjct: 585 GKPSFGKVELDGGRFAVFAISKATPGNLKQMPAEQQTMLREQLSQIDGNNAAQTYVKQMR 644

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 645 KRYKIQIEEAQL 656


>gi|220905632|ref|YP_002480944.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869931|gb|ACL50266.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 639

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 116/650 (17%), Positives = 229/650 (35%), Gaps = 39/650 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR  S++   K+   ++ + F+ WG+ +     S  + V  V    +    F  ++
Sbjct: 1   MLEYIRDKSQSLGVKLAFGLIILVFVFWGVGN-FNDRSSGTLVAVVNGDPISMREFELAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +     + +     +  E+ +   L ++IL +L++   L Q     G+      +   + 
Sbjct: 60  RNAEENLLRSNPG-LTREQLKQQQLGRQILRDLITQVLLSQEAARTGVSITPLELRMAVG 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F  +  +F  +V+   LA + +   ++    ++ L R  +  M             
Sbjct: 119 NIKGFQNEKGQFDPEVYTRVLAAQRMAPAQFEQDMSRDLLRQKIFAMVTAPAWVDPAESQ 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +   F  E R VDYI +      A   PS+  +  ++E +K  +  P    ++Y+L    
Sbjct: 179 KRFEFLREKRDVDYIFIPASDFAASVKPSDEEVQAYYESHKAQFAIPARADVAYVLVSPQ 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------------FQ 288
           +  K   IS+   +  Y  N  ++   E      ++ P  ++A EA              
Sbjct: 239 DLVKASGISSAAAEKWYADNAARFEQQEEVKAAHILVPLAEDASEADVKKAQEQAAAIEA 298

Query: 289 SLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            LK GK F  +A+       +     LG   +         D+ F+LA  G  +  +   
Sbjct: 299 ELKAGKSFAAVADAHNGPNAAGPGGELGWLKRGTTVKP-FEDAAFALA-PGKVSAPVRSQ 356

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           FG  I  V   K      F++V+ ++   M   + ++K+ +    L E   LG S+ + +
Sbjct: 357 FGLHIIKVEEKKDGGLPPFKQVEAEVLAAMAQEQGADKLHDVVDNLIEDNILGRSLKDSA 416

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
            +  +   +  L+  A  +        +    Q    +         D  +     +Y+ 
Sbjct: 417 EKYGLKWGETGLLSAAELEKT------LGVTAQGAATLVATPAGNPVDTALEAGK-AYVV 469

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
            ++ +S PA    LE V   +       K        A  L  E               G
Sbjct: 470 ARVIKSEPASTASLEAVKERIVAGLVEEKALAAALESAAALRKELENA---PLGAAGLKG 526

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVF---SGPVEMVKCFPIEN--GLSYVVFKVTNSK 580
            ++ T   + R      F     +++          +   + +E+  G   VV +V   +
Sbjct: 527 RTVKTVKGMERNGALASFGPNPVMAEALFEARAGQWLPVAYAVEDGSGSGAVVVRVKGVQ 586

Query: 581 VGPVQEKDKFISYLTQMMNKD----LLDSVIAYLKSQYSVTV-HDNLIQR 625
                E D     +   + +D    L +  +  L S   V V +++ I R
Sbjct: 587 PPDAAEWDMVKDIMANAVARDRADGLFEIFMQRLASGAKVEVYNEDFIDR 636


>gi|167581584|ref|ZP_02374458.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
           thailandensis TXDOH]
          Length = 644

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 95/646 (14%), Positives = 229/646 (35%), Gaps = 43/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + L+VL     I G+         S+ V +V   K+  + F    
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVL-PGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGML 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   + 
Sbjct: 60  RQQVDQARQMLGAQFDAKAFDTPQRRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D  F  + +   LA +G+   +Y +     L+   +    V        
Sbjct: 120 SDPVVASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +  +      + R V  ++L +        P++A ++ +++ +K  +   E   I Y+++
Sbjct: 180 VARRLTELAEQQREVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + S+ +++  Y+ N  +Y +     V  +                + +A++
Sbjct: 240 SQAAAAAAAQPSDIDVKKYYDDNIARYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               +K     F Q+AE+  +          LG  ++      +  D      KKG+ + 
Sbjct: 300 LLAEVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKGEISG 359

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+ G FG+ I   +++KP+      EVK  I   ++   A++   ++ +     +     
Sbjct: 360 VVQGDFGFHILKATDLKPAVVKPLAEVKDSIVADLKQQFAAKAFADNAEGFTSTVYEKAK 419

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+   + +  +    +     + +        +     + L  VF  D   + ++T  + 
Sbjct: 420 SLQPAADKYTL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADAVKNGNNTQAID 476

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           + + + +  ++    P+    L+ +   V+      + A          + E  K  K+ 
Sbjct: 477 VGNNTLIAARVTSYQPSTVPALDAIKDQVRAKVVADEAARLAKQDGEAKLAELRKS-KST 535

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
                    S            +        +S ++    + +  +   +     Y +F+
Sbjct: 536 AGFAAADKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFR 585

Query: 576 VTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           V +       +  +       L Q+  +   ++ +A L+++  V +
Sbjct: 586 VNSVVAAAPADDQRLAAAQQQLAQVYAQSETEAYLASLRARSKVKL 631


>gi|71901123|ref|ZP_00683230.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
 gi|71729128|gb|EAO31252.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
          Length = 655

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 116/671 (17%), Positives = 241/671 (35%), Gaps = 64/671 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R+ +  W+A   + +L +PFL   +        G   V  +              
Sbjct: 1   MLQKLREKTSGWIATAIIGLLVIPFLFV-IDVRYIGGGGKDDVAQLQASPTWWKSAPAFW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                  RQ +    F + + Q       + G   ++    ++   +K+LD L+    + 
Sbjct: 60  PISLLWQRQGISKQEFQSRFDQARLQRRAQQGEGFDAREFETLSNKRKLLDQLIEEHVMR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI--NEKEYIDHYTKM 158
              E  G+      V   IA    F  K  KF+ D +   LA+E      + Y ++   M
Sbjct: 120 LVAEGAGVVISDEAVRSIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYENYVRSM 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +  + +           N  L++      + R+ + + L    +   A+ S+  + +W+ 
Sbjct: 179 MQLSMIPSAIFDSGFVPNTELERILALLGQTRNAELVTLPALKL-DTAEISDVQIKEWYA 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF- 277
            ++D++R PE     Y+  D     +    S   L+  Y+  +      E R    ++  
Sbjct: 238 VHRDDFRQPETLSFEYVDLDAAHLPRP-TPSEAVLRKRYDAQQRGEAQNEQRKAAHILIT 296

Query: 278 -----PNQKEADEAFQSL-----KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323
                 +QK A+     L     K G  F  LA    ++ G   +   LG   +  +   
Sbjct: 297 VGADAASQKVAEAKAAKLVEEARKPGADFAALARINSQDPGSKDAGGDLGWVQRGMMVKP 356

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++F++ K G+    I   FG  +  +  IK +  + F+ V+  +A +       + 
Sbjct: 357 -FEDALFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQLAAEQTKEDIDKA 414

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + L    T +   S +  +    L  +           +AA P  +++LF 
Sbjct: 415 FNDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSR----RDAVGIAANPAVQRVLFS 470

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                     D  + +     + +++      +   L++V   V    +  +  ++ +S 
Sbjct: 471 HDFIQGGKVSD-PIQINPNHSVVLRVIAHTTEQQLPLDKVREQVVAAVRADRADKDGASA 529

Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS-----GPV 557
           A+ LV    K G    ++ K     +     + R     +   +     +FS        
Sbjct: 530 ADALVARLQK-GDTLEEVAKAEKLQITPLTGLQRT---AQVPAFAATRAIFSALSPVAGK 585

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
             V    ++NG  Y VF VT    G     P ++K+     L Q+     + + +  ++ 
Sbjct: 586 PTVGKVRLDNG-RYAVFTVTQVIPGDLTKFPEEQKEMLRQQLDQIEGTLAVHAYVDMMRK 644

Query: 613 QYSVTVHDNLI 623
           ++ VT+  + +
Sbjct: 645 RFKVTIDKSQL 655


>gi|15603844|ref|NP_246918.1| hypothetical protein PM1979 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12722418|gb|AAK04063.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 626

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 124/640 (19%), Positives = 251/640 (39%), Gaps = 33/640 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + +WV+K  L ++ V F++ G++  +F+   +S V  +  +++   +F   
Sbjct: 1   MLIEKLHGMTNSWVSKFLLGLIAVAFVLSGITGYVFTRVDTSAV-KINGEEISQQTFYQR 59

Query: 60  WKQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++ E   + Q++G    +         GL + +L+NL++   L Q+ +++ +     RV 
Sbjct: 60  YESESERLRQQLGAQFAALSGSPEFVAGLRQSVLNNLINQELLRQYADELKIGISDERVK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            EI  S  F  ++ KF + ++   L   G+    Y +   + L    +            
Sbjct: 120 QEIVTSQFFQ-QEGKFDNALYQRMLQLNGLTPDAYANIVREGLRLEQLQTGLAESEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
               Q    +F+ R+V     +   V      S+  ++ ++E  K  +  PE  ++ Y+ 
Sbjct: 179 AQQAQLTELFFQARTVRLAPFSLDQVLEKQTISDEEVSAYYEANKGAFLVPELAKVQYMT 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
               + EK I++S+ E+   Y+ NK  Y S   + +  +    + EA E +Q+L+ G  F
Sbjct: 239 LTRADVEKHIQVSDVEIAQYYQDNKALYVSQGQQRLSHIQVATEAEAKEIYQALQDGANF 298

Query: 297 IQLA---------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             LA          E G  LS  S G+F K      +  ++  +L + G F+  +     
Sbjct: 299 AGLASARSLDKISAENGGDLSWASAGTFPK------AFEEAANAL-QVGQFSQPVKVDDQ 351

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           + I  V+  K   T+  + VK  IA+Q+R    + +     K+L E        + + + 
Sbjct: 352 FHIILVTERKEPSTLPLEVVKTQIADQIRQNLVNNQYFSIEKQLAEKAFEHP--EGLEKA 409

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465
            ++  + +   DF        +V A      ++  +F  D          + + +   + 
Sbjct: 410 AEVAGLTIQETDFFS----ANDVPAALNYPNVISAIFHSDISQGGVNSEPMNVGEQHAVL 465

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V++  + P   R LEE   D+    K  K  E V ++ANQ     +    +    G   G
Sbjct: 466 VRVIANKPEGTRSLEEAKADIISYLKRQKAEEIVLAEANQAAQRLNDNASSTLPEGVQFG 525

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
           ++       NR    N       ++         +        +  V             
Sbjct: 526 SAEKWVFAENRDAALNNVIFAMSLT---DNKPSYIASKASNGEVVLVELSHIEQGALSAA 582

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           E + F   L Q     L ++++  L+++  + V++   Q+
Sbjct: 583 ESELFTKQLAQARQVALQNTLLQALRAKAKIEVNEKFFQQ 622


>gi|325577782|ref|ZP_08148057.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160527|gb|EGC72653.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 625

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 114/637 (17%), Positives = 238/637 (37%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + +++ K    ++ V FLI G+S  L+S S  S    V  + +    F+N 
Sbjct: 1   MLIEKMHGIAHSFIGKAIFALIPVSFLIGGMSGYLYS-SNDSFAAKVNGETISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE    +Q+ G               L + ++  LV    + Q+ +++ L      + 
Sbjct: 60  YNQEFEARAQQEGESFLAKTDSVEFVTALRQNLIQRLVDQELIRQYAKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P     + KF +  +   L++ G+    Y       L+   +            
Sbjct: 120 RAIVSDPNLQS-NGKFDNVRYQQLLSQNGLTSDTYAAILRNALTLEQMQNGLADSEFVVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +    + +F+ R      L      A    ++  +  +++    +   PE  ++ YI 
Sbjct: 179 AQVKDNAQVFFQKRIARLATLPLADEIAKQKVTDEEIKAYYDANAKSLVQPEQAKVQYIH 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
              +E  K   ++  ++   Y++NK ++ S     +  +    +KEAD  +Q LKKG  F
Sbjct: 239 VSANELGKLQPVTETQIAQYYQENKAQFISQ---KLAHIQLSTEKEADSVYQELKKGADF 295

Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            +LA+ +            LG      +P  +  D+   L   G ++  ++    Y I  
Sbjct: 296 AELAKTKSLDKLSGAQGGELGWVKDNELPK-NFEDAAL-LLNVGQYSTPVNVDGAYHIIL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V + K     + +EVK+ IA+ +R   A  + +   K + E  A   S D ++       
Sbjct: 354 VQDRKE---RTLEEVKEQIADTVRKNLAESRFQAVEKAVREKAAE--SSDSLAAVADAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+ GK+     V A      +   +F  D  +  +    + + +  ++ V++ +
Sbjct: 409 VKVEETDYFGKN----NVPAALNFPNVTSAIFESDIANGGANSEPLTVGENEFVVVRVVD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + L+E  + +++  K  K  + ++ KA Q V   S +           G S   
Sbjct: 465 HKAEGLQSLDEAKSTIEQFLKREKADKVLAEKAEQAVKALSTDSTKL-----PAGISFSE 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
                 MDN++        +       +        +    VV  +   +      QE  
Sbjct: 520 PQTFTLMDNKDPMLYEGVFAIAKPQDDKAAYQVARNSKGDVVVIALERVEEPTLSEQELA 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           KF + L +    +L   ++  L+ +  + +++  I +
Sbjct: 580 KFSTQLVRARQGELQGQLMQALREKAQIEINNTFINQ 616


>gi|167619701|ref|ZP_02388332.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
           thailandensis Bt4]
 gi|257138861|ref|ZP_05587123.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
           thailandensis E264]
          Length = 644

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 95/646 (14%), Positives = 229/646 (35%), Gaps = 43/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + L+VL     I G+         S+ V +V   K+  + F    
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVL-PGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGML 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   + 
Sbjct: 60  RQQVDQARQMLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D  F  + +   LA +G+   +Y +     L+   +    V        
Sbjct: 120 SDPVVASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +  +      + R V  ++L +        P++A ++ +++ +K  +   E   I Y+++
Sbjct: 180 VARRLTELAEQQREVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + S+ +++  Y+ N  +Y +     V  +                + +A++
Sbjct: 240 SQAAAAAAAQPSDIDVKKYYDGNIARYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               +K     F Q+AE+  +          LG  ++      +  D      KKG+ + 
Sbjct: 300 LLAEVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKGEISG 359

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+ G FG+ I   +++KP+      EVK  I   ++   A++   ++ +     +     
Sbjct: 360 VVQGDFGFHILKATDLKPAVVKPLAEVKDSIVADLKQQFAAKAFADNAEGFTSTVYEKAK 419

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+   + +  +    +     + +        +     + L  VF  D   + ++T  + 
Sbjct: 420 SLQPAADKYTL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADAVKNGNNTQAID 476

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           + + + +  ++    P+    L+ +   V+      + A          + E  K  K+ 
Sbjct: 477 VGNNTLIAARVTSYQPSTVPALDAIKDQVRAKVVADEAARLAKQDGEAKLAELRKS-KST 535

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
                    S            +        +S ++    + +  +   +     Y +F+
Sbjct: 536 AGFAAADKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFR 585

Query: 576 VTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           V +       +  +       L Q+  +   ++ +A L+++  V +
Sbjct: 586 VNSVVAAAPADDQRLAAAQQQLAQVYAQSETEAYLASLRARSKVKL 631


>gi|294627916|ref|ZP_06706495.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292597830|gb|EFF41988.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 656

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 107/672 (15%), Positives = 237/672 (35%), Gaps = 65/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R  +  W+A   L +L +PFL   + ++     G++ V  V              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++Q      Q+ G   +     S     ++LD LV    + 
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
              ED G+      V   IA  P F   D KFS D + + LA+        ++    +  
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVSDS 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+  +L        A  S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATTSEFERLLKLMGETRDVELAMLPPPA-ADAAPVSDAQIKQWYD 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R PE   I Y+  +              L+  YE  K ++  PE R    ++  
Sbjct: 238 GHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILIS 297

Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
              +A     +  K           G  F  LA+   +          LG   K  +   
Sbjct: 298 AGPDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++FS+ K G+    I   FGY +  +  +K     SF++V+  +A +     A + 
Sbjct: 358 -FEDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + +    T+++  +++  +    L     +       + + +     +L  
Sbjct: 416 FADVSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 468

Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            F +      +    + +     + +++      +   L++V   V    +  +  +  +
Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAA 528

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           + A+ L+    K G+  + +  +    +     + R               +FS P    
Sbjct: 529 AAADALLARVQK-GETLQALADSEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584

Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
               +     +G  + VF ++ +  G     P +++      L+Q+   +   + +  ++
Sbjct: 585 GKPSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMR 644

Query: 612 SQYSVTVHDNLI 623
            +Y + + +  +
Sbjct: 645 KRYKIQIEEAQL 656


>gi|221215062|ref|ZP_03588029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD1]
 gi|221164998|gb|EED97477.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD1]
          Length = 644

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 237/659 (35%), Gaps = 45/659 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V +V   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDESANVAAVNGHKITRVEFDGAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDQARQALGAQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVREALL 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D     + +   ++ +G+  ++Y +     L+   +    V        
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLMSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L  +      + R V  +VL      +   P++A L  +++ +K  +  PE   I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTGDYASKVQPTDAQLAAYYDAHKQQFATPETATIEYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + ++ +++  Y+ N   + +     V  +                + +A++
Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKSL----SDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +K     F Q+AE+  +          LG  ++       +  D+ F+L K+G+ +
Sbjct: 300 LLADVKAHPDQFAQIAEKNSQDAPSATKGGDLGFITRGSTAGGKAFDDAAFAL-KQGEIS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+    G+ I   + +KPS    F EVK +IA  ++   A++   ++ +     +    
Sbjct: 359 GVVQSDLGFHILKATEVKPSIVKPFAEVKDEIAATLKQQYAAKAFSDNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL--SKDHTV 456
            S+   + + K+      +       +      +     + L  VF  D     +    +
Sbjct: 419 KSLQPAADKYKLTIQTATVTPTPNPQL---PATSPLNNAKFLAAVFANDSVKAHNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ +  PA    L+ +   V++     + AE         + E  K  K+
Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDAIKDAVRQKVVAEQAAELAKKDGAAKLAELQKS-KS 534

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                     S   +  ++             +S V+    + +  +   +     Y ++
Sbjct: 535 TEGFAAAQKISRTQSQGLS----------PAALSAVYKVDPKTLPAYVGVDLGADGYAIY 584

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           +V     G   +  +  +   QM   +     ++ +A L+ +  V ++ +   +    +
Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVEAQSEGEAYLAALRDRSKVKLYGSTASQSQGND 643


>gi|161524527|ref|YP_001579539.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans ATCC 17616]
 gi|189350717|ref|YP_001946345.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia multivorans
           ATCC 17616]
 gi|160341956|gb|ABX15042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans ATCC 17616]
 gi|189334739|dbj|BAG43809.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia multivorans
           ATCC 17616]
          Length = 644

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 236/659 (35%), Gaps = 45/659 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V +V   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDESANVAAVNGHKITRVEFDGAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDQARQALGAQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVREALL 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D     + +   ++ +G+  ++Y +     L+   +    V        
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLMSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L  +      + R V  +VL      +   P++A L  +++ +K  +  PE   I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDYASKVQPTDAQLAAYYDAHKQQFATPETATIEYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + ++ +++  Y+ N   + +     V  +                + +A++
Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +K     F Q+AE+  +          LG  ++       +  D+ F+L K+G+ +
Sbjct: 300 LLADVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGEIS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+    G+ I   + +KPS    F EVK +IA  ++   A++   ++ +     +    
Sbjct: 359 GVVQSDLGFHILKATEVKPSIVKPFAEVKDEIAATLKQQYAAKAFSDNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL--SKDHTV 456
            S+   + + K+      +       +      +     + L  VF  D     +    +
Sbjct: 419 KSLQPAADKYKLTIQTATVTPTPNPQL---PATSPLNNAKFLAAVFANDSVKAHNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ +  PA    L+ +   V++     + AE         + E  K  K+
Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDAIKDAVRQKVVAEQAAELAKKDGAAKLAELQKS-KS 534

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                     S   +  ++             +S V+    + +  +   +     Y ++
Sbjct: 535 TEGFAAAQKISRTQSQGLS----------PAALSAVYKVDPKTLPAYVGVDLGADGYAIY 584

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           +V     G   +  +  +   Q    +     ++ +A L+ +  V ++ +   +    +
Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQTAQVEAQSEGEAYLAALRDRSKVKLYGSTASQSQGND 643


>gi|241763692|ref|ZP_04761741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
 gi|241367081|gb|EER61455.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
          Length = 641

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 111/646 (17%), Positives = 235/646 (36%), Gaps = 47/646 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IRK S+  V  +  +++   F++ G+  + FS   SS V  V    +  + + N+ 
Sbjct: 1   MFESIRKHSK-VVMLLLFLLIIPSFVLVGIDRSYFS-QKSSVVARVDGHDISQTDWDNAH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW---G 117
           K E   I  +    V+++   S       L+ LV         + + L     R+     
Sbjct: 59  KVETDRIRAQSP-TVDAKLLDSPQARYATLERLVRDRVFQAASQKMHLVTSDSRLARSLQ 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI         D     + + + +  +G++ + +  +  + +S   V+G  +G    ++ 
Sbjct: 118 EIPAIAALKRPDGSLDAEAYRALVGAQGMSPEGFEANVRRDISVNQVLGGVMGTAFGTDA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +  A    ++ R V     N         PS+A L  +++ +  +++  E   + Y++ 
Sbjct: 178 QVKLALDALYQRREVQVARFNPADFAGKVTPSDADLEAYYKAHTADFQQAEQATVEYVVL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293
           D+      I ++ D+L+  Y++N  +    E R    ++    K+A  A +   K     
Sbjct: 238 DLDSVRAGITLNEDDLRTYYKENLTRLAGKEERRASHILINASKDAPAADREKAKARATQ 297

Query: 294 ---------KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                      F ++A+    + G + +   L  F +  +      D+ F++ KKGD + 
Sbjct: 298 LLEQVRKAPATFAEVAKKSSDDTGSAPAGGDLNFFGRGAMVKP-FEDAAFAM-KKGDISD 355

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FGY I  +++IK     +F+E++  +  +++  +A  K  E  +     +     
Sbjct: 356 VVETDFGYHIIMLTDIKTPRQPNFEELRPSMEAELKQQQAQRKFAEVAESFANGVYEQSD 415

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           S+  ++ + K+       V  +        +A      +LL  +F  +   +K +T A+ 
Sbjct: 416 SLKPVAEKLKLKVQTATGVTRSPAPGATGPLA----NGKLLEALFSAESLENKRNTEAVE 471

Query: 460 DG--SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
            G       ++     AR   L+EV   V+  +   K+AE    +               
Sbjct: 472 VGPSQMAAARVTAYTAARTLPLDEVRARVRTLYVAEKSAELARKEGE----------AKL 521

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
                  G        +    ++ +      +  V       +  +   +     Y V K
Sbjct: 522 AAWKSAAGNPAGLQAAVVVSRDQPQNQPRPLVDAVLGASTAALPAWVGVDLGAQGYAVAK 581

Query: 576 VTNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           VT          Q   +      Q  +     +    LK ++ V +
Sbjct: 582 VTRIVPRDAPNEQVARQERQQYLQWWSNAEGLAYYELLKERFKVQI 627


>gi|268592032|ref|ZP_06126253.1| peptidyl-prolyl cis-trans isomerase D [Providencia rettgeri DSM
           1131]
 gi|291312424|gb|EFE52877.1| peptidyl-prolyl cis-trans isomerase D [Providencia rettgeri DSM
           1131]
          Length = 651

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 109/628 (17%), Positives = 248/628 (39%), Gaps = 19/628 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E +R  + + + KI L ++ + F++ G+       + ++    V  Q +       ++
Sbjct: 29  MMENLRTKANSPLLKIILALIILSFVLGGVMMGGLGGNSANNAAEVNGQSISREQLQQAF 88

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +QE   + + +G   +   S       L ++ LDNL++   ++Q+  ++ L A   ++  
Sbjct: 89  QQERQSLQEYLGDKFSEVASNEESMNLLRRQALDNLINNELINQYANELQLSASDQQIEQ 148

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P+F   D +F  + +   L+R  IN         + L+R  +   F G       
Sbjct: 149 YIFSMPVFQ-TDGRFDSEKYREILSRNNINADSLAAQIRQDLTRAQLGKTFTGTDFALPS 207

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +      + + R +   +L+   V A    S   L  +++  ++++ +PE  ++SY+  
Sbjct: 208 EVKAYAELFMQEREIRTAILDLAEVQAKQTASEEELKAYYDANQNSFISPEKVQVSYVEM 267

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D         +S +E++A Y++N + Y   E +    +   ++KEA++    LK+G  F 
Sbjct: 268 DAASMP-PATVSAEEVKAYYDQNLKNYTQAEQKQYSMIQVASEKEANDILNELKQGADFA 326

Query: 298 QLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            LA E+     S    G                  L +KG  +  +     YVI  + +I
Sbjct: 327 TLATEKSTDKFSAGQKGLIGWMEAASTPSEIVAAKLTEKGQLSAPVKSQNSYVIFRLDDI 386

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           KP     F++V++ I   +   K  ++  +  +++ E  A  + M+ +   E +  +   
Sbjct: 387 KPESIKPFEQVEESIKTSLLQDKNIKQFYDLQQKVSE--AATSDMESLVSVESVSGLKAV 444

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474
             D+  +      +       ++   R+  K+     +  V   +G     V++ E  P 
Sbjct: 445 TTDWFDRTNPPAALNFPKVVSEVFSDRLVDKNGSKGINSDVINVEGDRAFVVRVTEYKPE 504

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
                ++V ++++   K  K   E+ + +++L+ E    GK    +    G     T  +
Sbjct: 505 SVEPFDKVKSEIETLVKRQKADAELKATSDKLLAEL-NAGKGTEAL-NAAGVKFSDTQTV 562

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPV--QEKDKF 590
           +R+  +               P +    + +      +YV+ ++    +G     E  + 
Sbjct: 563 SRLMPQTAVINATMEMP---QPADGKPSYALARDESDNYVLIQLDKVTLGQPTDDELKQL 619

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                  M+  + ++++  L+    + V
Sbjct: 620 TREYQGAMSSAVNEALMLNLRENAKIEV 647


>gi|310815590|ref|YP_003963554.1| peptidyl-prolyl cis-trans isomerase D, putative [Ketogulonicigenium
           vulgare Y25]
 gi|308754325|gb|ADO42254.1| peptidyl-prolyl cis-trans isomerase D, putative [Ketogulonicigenium
           vulgare Y25]
          Length = 612

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 122/625 (19%), Positives = 252/625 (40%), Gaps = 31/625 (4%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           K   +       +++    +I G    L        V  VG + V    +  + +Q L  
Sbjct: 4   KKRTSPFVWAGFILIAGGLMITG---GLGLSGTVRNVGKVGDKTVTALEYQGAMQQGLQQ 60

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           + Q  G  +   + + +G +    + LV    L+     IGL      V  +I +   F 
Sbjct: 61  MRQMFGNTLTFAQFQQMGGEAMAREQLVQERALENEASRIGLSVGDLYVARQIQQISAFQ 120

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
           G    FS + + + L + G+ E+++ D     ++   +     G +    +  +   RF 
Sbjct: 121 GLTGGFSLETYRAALRQVGLAERQFEDAQRDAIASGLLSSAIAGDLTMPAIYAETLARFR 180

Query: 187 FENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
            E R + +  +   +V   I  P+   L  + + + D +  PE +R++Y         + 
Sbjct: 181 GERRVITWAAVTAANVTTDIPAPTEEDLQAYHDSHPDVFTTPETRRVTYAALTPEMAAET 240

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQG 304
           IE+S DE++A Y++  + Y  PE R V++L F N  +A  A   ++ G+  F  LA E G
Sbjct: 241 IEVSEDEIRALYDQRIDSYIVPERRIVDRLTFNNDADATAALARIQSGEITFTDLANEMG 300

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            SL +I  G  ++  + +     ++F+ A  GD    +   FG V+  V+    +    +
Sbjct: 301 FSLEEIDQGEMTEAALGEGGA--AVFAAA-TGDTVGPVPSRFGPVLYRVNVDLAAEETPY 357

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
             V+  + N++  ++A   + ++   L + +A G  +++I     + S  L       ++
Sbjct: 358 DAVRDTLRNELAASRAGRVIAQEKASLTDLVAGGAQIEDIVNLSDLRSGTLD-----WQE 412

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
              + +AA       +        P      V LPDG    +++ E +P R + L+E+  
Sbjct: 413 GNTEGMAAYEPFRAAIAAAEIGAFP----AIVDLPDGGIFVLRLDEIVPPRVQTLDEMRA 468

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
             +  W+   T + V+++A +L  E  + G  F      LG +  T   + R D      
Sbjct: 469 YAEVMWRFQATQDAVATEAARL-AEAVEGGATFE----ELGLTATTEPALTRSDVVAGT- 522

Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV------QEKDKFISYLTQMM 598
            Y  ++  F+     V     +   + V+ ++ +             ++D     L   +
Sbjct: 523 PYGTMTTAFTLDSGDVTTLSDQG--TVVILRLDSIATADESNATYTADRDALAQTLNNSL 580

Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLI 623
             D++ +    +++  SV+ ++  +
Sbjct: 581 AGDVMQAYGGAVRATTSVSFNETAV 605


>gi|145638176|ref|ZP_01793786.1| lipoprotein signal peptidase [Haemophilus influenzae PittII]
 gi|145272505|gb|EDK12412.1| lipoprotein signal peptidase [Haemophilus influenzae PittII]
 gi|309751332|gb|ADO81316.1| Putative peptidyl-prolyl cis-trans isomerase [Haemophilus
           influenzae R2866]
          Length = 622

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 112/637 (17%), Positives = 248/637 (38%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISKNLQVTDIEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKMAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  +   +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +    +  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESGYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + S+  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       + +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616


>gi|170720931|ref|YP_001748619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           W619]
 gi|169758934|gb|ACA72250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           W619]
          Length = 623

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 105/639 (16%), Positives = 223/639 (34%), Gaps = 40/639 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++ V   + G      + S S     V  Q +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAASHSQDAAKVNGQTISQNELSQAA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L    L  L+    L Q  +D         +   I 
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDEKLLRDAALKGLIERKLLLQGAKDAKFAFSEAALDQVIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KF+ D F   + + G    ++ +   + +    V     G    ++  +D
Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMGYGRLQFREMLAEEMLIGQVRTGIAGSSFVTDQQVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  L  +  PA    S+  +   +E++   +  P+   I Y+     
Sbjct: 180 AFARLENQTR--DFASLTFKANPAAVKVSDDEVKAHYEQHAKEFMTPDQVVIDYVELKKS 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               ++++++DEL+A+YEK        E R    ++            +   +E  Q L 
Sbjct: 238 AFFDQVKVTDDELKAQYEKEIANL--AEQRHAAHILIEVNDKVTDAQAKARIEEVEQRLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F +LA+E  +     + G    F+   + D    D+++ L   G  +  +   FGY
Sbjct: 296 KGEDFAKLAKEFSQDPGSANSGGDLGFAGPGVYDPVFEDALYKL-DDGQVSAPVRTQFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +   +     SF  +K  +   ++     ++  +  K+L++       + + ++  
Sbjct: 355 HLIKLLGKQAPEVPSFASLKDKLTRDLKTPLVEQRYVDASKQLQDAAYEAADLAQPAQDL 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
            +           G +        I     ++   F ++  +  +    + L   + + +
Sbjct: 415 NLKVHTSAPFGREGGE-------GITANRAVVQAAFSEEVLEEAANSTAIELDPETTVVL 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++KE        LE V   + +     K   E+ +K ++L+        +        G 
Sbjct: 468 RVKEHRKPEQMPLEAVAKSISEHLAKEKATAELKAKTDKLIAGLRDG--SVAAGTAQEGQ 525

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI------ENGLSYV--VFKVTN 578
           S      + R            +  +F       K  P+       +G   V  +  V  
Sbjct: 526 SWKAYEAVTRN---QDGIDPAELQALFRLAKPQAKDKPVYGSVVLADGSLVVLQLKGVNE 582

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                 +EK +   YL     +    +    L+    +T
Sbjct: 583 GAAASDEEKQQIRRYLASRAGQQDFAAYRKQLEGSADIT 621


>gi|304311294|ref|YP_003810892.1| Peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium HdN1]
 gi|301797027|emb|CBL45240.1| Peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium HdN1]
          Length = 641

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 116/646 (17%), Positives = 246/646 (38%), Gaps = 34/646 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++  R     WV K  LV++ VPF+I G+   +F+       + V   ++  +    + +
Sbjct: 1   MDAFRSMLTGWVGKSLLVLISVPFVIVGIEG-IFTSGRDRAALVVDDHEISNAEIQQAVE 59

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                I +++G  V+     +  +   +   L+    L  F +  G           +  
Sbjct: 60  NRRTQILEQLGKGVDPSFITAEMVRPAVEQELIKRQLLIGFADKDGFSVPEEAAKSYVRA 119

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P F     +FS  +  S L+R GI  K  +++ +  L    + G   G    +   +++
Sbjct: 120 VPQFQTPAGEFSQPLLNSYLSRAGITAKGLLNNVSTSLLTEQIQGGLGGSAFATPADVER 179

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 + R +    +      A  +PS+  LT+++E ++D+Y++ E  ++SY+     +
Sbjct: 180 ILSLDKQVRDIGVAYIKPEEFRAGINPSDFDLTEYYEAHQDDYQSEERVKVSYVHLSQEQ 239

Query: 242 KEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---------ADEAFQSLK 291
                E IS+ E+Q + ++  +     E R  E ++F    +         A++A   LK
Sbjct: 240 FAANDEPISDAEIQDKLDEMIKDAEGNERRHAEHILFETGSKHSDAEARSLAEKALAELK 299

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            GK F +LA+ Q +       G    ++   +      D++F+L    D + V+   FGY
Sbjct: 300 AGKNFEELAKAQSEDFESAKNGGDLGYAGRGVYAPEFEDALFALQAPNDISGVVKTEFGY 359

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I  +  +        Q+ +  I  ++R  + +  +      ++        + EIS + 
Sbjct: 360 HIIKLIGVDEPPLPDMQKSRDHIIAEIRKERIASNIGTIIDDIDRMAFESNDLSEISAQY 419

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
                  P V        G  + A P   +  F      +  + D  + L DGS + +++
Sbjct: 420 DQK----PEVSDWLTRKGGTGIFADPKVVEAAFSSEILQEQRNSD-VIELEDGSLVVLRM 474

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
            +  P R+  L+EV   V++     K  E  + +A +L+      G++   +  +     
Sbjct: 475 DQHEPVRELSLDEVKDKVREQVIASKAQELATEQAKELLGRL-NAGEDRVAVLASAKLFW 533

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF-----PIENGLSYVVFKVTNS---- 579
             +  + R            + + F  P      +     P+ +G    +  V+N     
Sbjct: 534 QDSPALARNAT---MPPQAVVQKAFELPKPAAGKYSNTTLPLASG-EIALISVSNVVSGD 589

Query: 580 -KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            K     E+  F + L        ++  ++ L+S+  +  + N  +
Sbjct: 590 GKAKSEAEQRAFQNGLAMRYGSMDMEGFLSTLESKAVIKRNQNEAE 635


>gi|317154730|ref|YP_004122778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944981|gb|ADU64032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 632

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 113/640 (17%), Positives = 240/640 (37%), Gaps = 37/640 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           MLEI+R+ +  W+ KI   ++ V F+  +G+S           + +V  Q +  + F ++
Sbjct: 1   MLEIMRENASGWIVKILFGIIIVVFVFAFGMSG--LETGQDPILATVNDQIITRAEFEDA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +++    +       V   + +     + +L  L++   L      +G+ A    V+  I
Sbjct: 59  FQRAAEGVRT-ANPDVTPAQLQDPQFKQMVLGELINSRLLLHEAARLGISASDEEVFAAI 117

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            R   F  +   F  D++++ L    +    +  ++   +    V  M       +    
Sbjct: 118 TRQSYFWNQAGAFDRDIYMAALRSIRMTPALFEANFKNEMIAGKVQDMVRKTGVATPEQA 177

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
            Q   +  E   VDYI+ +              + +++   +D +  PE  RI Y+ F  
Sbjct: 178 RQIFDWVGEEVRVDYILSSPAAFAPQVRVDAKEVDEFYASNQDKFMVPEQVRIRYLAFTP 237

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEADEAFQSLK------- 291
            +   + E+S+ E+ A +  N       E      L+   +  ++DE     +       
Sbjct: 238 KDLAARQEVSDPEIDAYFAANSASMKQEEQVKASHLLIMTSDSDSDEEQAEARKKIDAAY 297

Query: 292 ----KGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
                G  F  LA +      +     LG F +  +       + FS   KG  +  +  
Sbjct: 298 AKAKAGGDFATLARQNSEGPSAAGGGDLGWFGRGDMV-PEFEQAAFS-TPKGQVSEPVRT 355

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ I +V + K +  ++  EV+KDIA  +   KA+E+V +   +  + L  G ++D +
Sbjct: 356 QFGWHIIYVEDRKEARELALDEVRKDIAIAIAEEKAAERVTDLLDQAMDRLVSGMTLDAV 415

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP-DGSY 463
           +    ++++    +   G            +           D   ++ H   L  +G Y
Sbjct: 416 ADELGMLAVTSSPLPEQGLVQN--------FGLTPEAATVVMDIQKNESHKTPLSINGGY 467

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           M V+  E IPA    ++EV   ++      K A    ++A +++ + +  G +  +    
Sbjct: 468 MLVEKVEDIPAAPLPIDEVRDAIEGAITQQKAAALAMTEAQEILAQLT--GPDSAEAAAR 525

Query: 524 LGASLLTTNQINRMDNENKFF-GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
             A + T+   +R  N              F    +     P       +V +++     
Sbjct: 526 YAARIKTSEPFDRQGNVPALGQSQALAEAAFGSAGKEWLPQPFAMQQGIIVARLSEVIPA 585

Query: 583 P----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                 ++KD +I   +Q    ++L++ +  L+ Q  + +
Sbjct: 586 SEETWAEQKDAWIDQASQNYQLEVLNAYMTGLRQQADIEI 625


>gi|68249587|ref|YP_248699.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           86-028NP]
 gi|68057786|gb|AAX88039.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           86-028NP]
          Length = 622

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 114/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + V+K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLEDEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  + +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  ++  +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + S+  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       E +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFGMQLLRSHQSELQFQLIQGLRERAKIEVNDSFINQ 616


>gi|170702053|ref|ZP_02892969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria IOP40-10]
 gi|170133039|gb|EDT01451.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria IOP40-10]
          Length = 644

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 103/647 (15%), Positives = 240/647 (37%), Gaps = 45/647 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V +V   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D     + +   L+ +G+  ++Y +     L+   +    V        
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKG 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              +      + R V  +VL      A   P++A LT +++ +K ++  PE   I Y+++
Sbjct: 180 PAQRLSELAAQQREVQALVLKTGDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + ++ +++  Y+ N   + S     V  +                + +A++
Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +K     F Q+A++  +          LG  ++       +  D+ F+L K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKDSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGDVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+    G+ I   + +KPS    F +VK  IA Q++   A++   ++ +     +    
Sbjct: 359 GVVQSDLGFHILKATEVKPSVVKPFADVKDHIAVQLKQQYAAKAFTDNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            ++   + + K+      ++      +        P   + L  VF  D   S+++T  +
Sbjct: 419 KTLQPAADKYKLTIQTATVMPTPNPQLPPTSPLNNP---KFLAAVFASDSVKSRNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ +  PA    L+ +   V++     +  E         + E  K    
Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDTIKEAVRQKVVAEQATELAKKDGAAKLAELQK---- 531

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                           +++RM  +++      +S V+    + +  +   +     Y ++
Sbjct: 532 -----SKSADGFTPVQKVSRM--QSQGLTPAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584

Query: 575 KVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +V     G     Q+       + Q+  +   ++ +A L+ +  V +
Sbjct: 585 RVNAVIPGTAVDPQQLAAAQQQMAQVEAQSEGEAYLAALRDRSKVKL 631


>gi|226197150|ref|ZP_03792727.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pakistan 9]
 gi|225930529|gb|EEH26539.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pakistan 9]
          Length = 644

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 99/646 (15%), Positives = 230/646 (35%), Gaps = 43/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + L+VL     I G+         S+ V +V   K+  + F  + 
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVL-PGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTL 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   +++   +    +++LD L+    L    + + L A  G V   + 
Sbjct: 60  RQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D  F  + +   LA +G+   +Y +     L+   +    V        
Sbjct: 120 SDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +  +      + R V  +VL +    A   P++A ++ +++ +K  +   E   I Y+++
Sbjct: 180 VARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + S+ +++  Y+ N   Y +     V  +                + +A++
Sbjct: 240 SQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               +K     F Q+AE+  +          LG  ++      +  D      KK + + 
Sbjct: 300 LLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEISG 359

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+ G FG+ I   +++KP+      EVK  IA  +R   A++   ++ +     +     
Sbjct: 360 VVQGDFGFHILKATDVKPAVVKRLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKAK 419

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+   + + K+    +     + +        +     + L  VF  D   + ++T  + 
Sbjct: 420 SLQPAADKYKL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAID 476

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           + + + +  ++    P+    L+ +   V+      + A          + E  K  K+ 
Sbjct: 477 IGNNTLIAARVTNHQPSTVPALDAIKDQVRAKVVADEAARLAQQAGEAKLAELRKS-KST 535

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
                    S            +        +S ++    + +  +   +     Y +F+
Sbjct: 536 AGFAAPDKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFR 585

Query: 576 VTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           V +       +  +       L Q+  +    + +A L+++  V +
Sbjct: 586 VNSVVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631


>gi|330817266|ref|YP_004360971.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia gladioli BSR3]
 gi|327369659|gb|AEA61015.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia gladioli BSR3]
          Length = 646

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 100/648 (15%), Positives = 238/648 (36%), Gaps = 46/648 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + L+VL       G+         S+ V SV   K+  + F  ++
Sbjct: 1   MLDFFRNHQRLMMFLLLLIVLPGL-GFVGVQGFRDFFDDSANVASVDGHKITRAEFDGAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   ++++  +    +++LD ++    L   +  + L A    V   + 
Sbjct: 60  RQQIDQARQALGANFDAKQFDTPERRQQLLDGIIEQRALTDEVRRLHLTASDNAVREALM 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +P+       D     + +   LA +G+   +Y +     LS++ +    +        
Sbjct: 120 SNPIIASLRKPDGSIDAERYTQLLAMQGMTPDQYQESVRYQLSQSQLPNNLINSAFTPRS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +  +      + R +  +VL      A   P++A L+ +++ +K  +  PE   I Y++F
Sbjct: 180 VAQRLTDLAQQQREIQAMVLKPADYAAKVQPTDAQLSAYYDAHKQAFATPETASIQYLVF 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADE 285
                    + S+ +L   YE N  ++ +     V  +     +            +A++
Sbjct: 240 TPAAAAANAQPSDADLHKFYEDNTARFRTEAQVRVSHIFIAAARNASASDKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +      F Q+AE+  +          LG  ++       +  D+ F+L K G+ +
Sbjct: 300 LLAEVTAHPDQFAQIAEKNSQDAPSAAKGGDLGYVTRGSTAGGPAFDDAAFAL-KPGELS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+    GY I   +++KP+    F EVK  IA +++   A++   ++ +     +    
Sbjct: 359 KVVESDLGYHILKATDVKPAVVKPFDEVKDSIATELKQQFAAKAFSDNSEGFSSLVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            S+   + + K+      +       +        P   + L  VF  D   + ++T  +
Sbjct: 419 KSLQPAADKYKLTIQTATVTPQPNPALPPDSPLNNP---KFLAAVFAADSVKNGNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++    PA    L+ +   V++ +   ++A+         +    K    
Sbjct: 476 DVGNSTLIAARVTADKPAAVPALDAIKDVVRQKYIADESAKLAKQDGAAKLAALQKSKST 535

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN---GLSYVV 573
                       L   +++R          + I+ ++    + +  +   +      Y +
Sbjct: 536 ---------DGFLPAEKVSRTQTLG--LSPEAIAAIYKADAKSLPAYVGVDLGANGGYAI 584

Query: 574 FKVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           F+V           Q+       L Q+  +   ++ +  L+ +  V +
Sbjct: 585 FRVNAIVPPAPVDPQQLTAAQQQLAQVYAQSESEAYMKALRDRSKVKI 632


>gi|254511419|ref|ZP_05123486.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
 gi|221535130|gb|EEE38118.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
          Length = 613

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 120/604 (19%), Positives = 252/604 (41%), Gaps = 26/604 (4%)

Query: 26  LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
             +G +    +V    TV  VG + V   ++    ++E+  +  + G  +   +A  +GL
Sbjct: 25  AGFGATSLTGTV---RTVAQVGDESVSVDAYFRELQREIRAVEAQTGQAMQIAQAHDLGL 81

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
           D+  L  L++ A LD  +  +G+      +  EI + P F G +  F  + +  +L + G
Sbjct: 82  DQLALSRLIALAALDNEVAQLGISIGDENLQNEIVQIPAFQGVNGTFDREAYRFQLEQVG 141

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           + + E+     K  +RT V G  +GG+     L +    +    RS     L+   +   
Sbjct: 142 MTDAEFESDLRKESARTIVQGAVIGGVEMPLALTEALANYVLARRSFTLATLSAEALETP 201

Query: 206 A-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
              P++A +  ++++  D +  P  KR++Y +         +EI  D L+  Y++   +Y
Sbjct: 202 VPQPTDAQIQAFYDENTDRFTLPRTKRLTYAILSPEMLLDAVEIDEDALRRLYDQRAGQY 261

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
             PE R VE+L +P+++ A EA   L+  G  F QL  ++   LSD+ LG  ++E + D 
Sbjct: 262 LQPERRLVERLPYPSEEAATEALAQLEVGGADFEQLVRDRQLELSDVDLGDVTREDLGDA 321

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             AD++F+     D    +   FG  +  ++       VSF+E + ++  ++   +A   
Sbjct: 322 --ADTVFAAG-IDDVVGPLPTVFGPALFRINGTLAENNVSFEEARPELREELAADRARRL 378

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           ++   + + + LA G ++++++   ++    +     +G       VAA          V
Sbjct: 379 IEAQAEDINDMLAGGATLEDLAADTEMELGTIDWTQQSGDG-----VAAYDGFRAAAVAV 433

Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
              D P        L DGS   +++ + +  R   L+     V + W  V+TA  + ++A
Sbjct: 434 QEGDFP----EIGFLEDGSIFALRLNQVLEPRPEPLDSARARVAEAWMQVETARALQNQA 489

Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
           + ++ + + +G          G      N + R    +     D ++QVF      ++  
Sbjct: 490 DAILTQLATDGDF-----TATGLPFRVENALTRTAFLDDV-PVDFMAQVFELEPGELRVI 543

Query: 564 PIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           P       V            +++   D   + + Q + +++ D  +   +++    +  
Sbjct: 544 PGNGNALIVRLDEELPPAETDEQRQMQDALAAQMNQALAQNIFDIYVRNAQTRARPVLDQ 603

Query: 621 NLIQ 624
             + 
Sbjct: 604 QALN 607


>gi|171322244|ref|ZP_02911086.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MEX-5]
 gi|171092428|gb|EDT37778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MEX-5]
          Length = 644

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 102/647 (15%), Positives = 239/647 (36%), Gaps = 45/647 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V ++   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAINGHKITRVEFDGAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D     + +   L+ +G+  ++Y +     L+   +    V        
Sbjct: 120 NDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKG 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              +      + R V  +VL      A   P++A LT +++ +K ++  PE   I Y+++
Sbjct: 180 PAQRLSELAAQQREVQALVLTTSDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + ++ +++  Y+ N   + S     V  +                + +A++
Sbjct: 240 SPAAAGASAQPTDADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +K     F Q+A++  +          LG  ++       +  D+ F+L K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGDVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+    G+ I   + +KPS    F +VK  IA Q++   A+    ++ +     +    
Sbjct: 359 GVVQSDLGFHILKATEVKPSLVKPFADVKDQIAVQLKQQYAATAFSDNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            ++   + + K+      ++      +        P   + L  VF  D   S+++T  +
Sbjct: 419 KTLQPAADKYKLAIQTATVMPTPNPQLPPTSPLNNP---KFLAAVFASDSVKSRNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ +  PA    L+ +   V++     + AE         + E  K    
Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDTIKDAVRQKVVAEQAAELAKKDGAAKLAELQK---- 531

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                           +++RM  +++      +S V+    + +  +   +     Y ++
Sbjct: 532 -----SKSADGFTPVQKVSRM--QSQGLTPAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584

Query: 575 KVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +V     G     Q+       + Q+  +   ++ +  L+ +  V +
Sbjct: 585 RVNAVIPGTAVDPQQLAAAQQQMAQVEAQSEGEAYLTALRDRSKVKL 631


>gi|304413823|ref|ZP_07395240.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Candidatus
           Regiella insecticola LSR1]
 gi|304283543|gb|EFL91938.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Candidatus
           Regiella insecticola LSR1]
          Length = 623

 Score =  356 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 112/628 (17%), Positives = 271/628 (43%), Gaps = 21/628 (3%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E +R A+ +   KI +V++ + F++ G+S  L   +       V  +K+  +    +++
Sbjct: 1   MEKLRAATNSVALKIIIVLIILSFILTGVSGYLVGGAN-DYAAKVNGEKISQAKLEQAFQ 59

Query: 62  QELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            E   + Q++G   +   S  +    L ++ L+ L++   L+Q+ + +GL     +V   
Sbjct: 60  SERARMQQQLGEQFSTLASNESYMSKLRQQTLEQLINNVLLNQYTQKLGLTVSDEQVKES 119

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I + P F   DNKF +  +++ +   G    ++     + L    ++           + 
Sbjct: 120 IRQIPYFQ-TDNKFDNTKYLNLINSMGYKPDQFAQLQLQQLILQQLLQAVGSSEFILPME 178

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           + +      + R V    ++   + A    +N  L  ++ + K ++ AP   +ISYI  D
Sbjct: 179 MKKTAELVLQQRDVRLATIDVNALQAHQKVTNTELKNYYHQNKKDFIAPAEIKISYIFMD 238

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           + E +KKI +S  E+++ Y+++K  Y  PE +    +    +KEA      LK G  F  
Sbjct: 239 MAEIQKKITVSEKEIESYYQQHKNNYIQPERKHFSVIQLKTEKEAQAILAELKTGADFAT 298

Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+++   +    +  +LG        D        +L +KG  + VI  S GY+I  ++
Sbjct: 299 LAKQKSVDIISRKNGGTLGWLEASMTLD---ELKQANLTEKGQLSDVIKSSVGYLIVRLN 355

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           +IKP  + +F+EV+ ++  +++  K  +      +++    A   + D ++  E    + 
Sbjct: 356 DIKPEQSRAFKEVRTELLKKVQQEKTLDAYYALQQQVS--TAAANNNDSLASAEVAADLQ 413

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGS-YMWVQIKESI 472
               ++  +     E+   P  + +    + G D   S +  V   +G     +++    
Sbjct: 414 AKKTNWFTRRTVPAELNFKPVIQAIFEGSLIGADGASSGNSDVINVEGDKAFVIRVDGYT 473

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           P + +  ++  +++++  K  K      ++  +++    +E K+ + I K  G +     
Sbjct: 474 PEKPQSFDQASSEIRELIKRQKAENAARTQGEKILAALRQE-KDIQ-IMKKEGLNFGKKE 531

Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--F 590
            ++R  + ++       +       + V     ++  ++V+ ++     G + + ++  F
Sbjct: 532 TLSR-SSYDEMLIKTIFALAHPQKNKPVYGLSQDSKGNFVLIELLTVTAGKLSQDEEASF 590

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           I+ + +  +    ++++A L  Q ++ +
Sbjct: 591 INKMQEASSGMNFEALMANLHQQATIKI 618


>gi|260581919|ref|ZP_05849715.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           NT127]
 gi|260095112|gb|EEW79004.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           NT127]
          Length = 622

 Score =  356 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 113/637 (17%), Positives = 247/637 (38%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISKNLQVTDIEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  +   +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIKE 470
           + +    +  +    + V A      +++ +F  D          + + D   + V++ +
Sbjct: 409 VKVQESGYFSR----QNVPAGLNFPNVIYTIFESDSTNIGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + S+  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSETPESTVD-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       E +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFGMQLLRSHQSELQLQLIQELRERAKIEVNDSFINQ 616


>gi|145637308|ref|ZP_01792969.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae PittHH]
 gi|145269560|gb|EDK09502.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae PittHH]
          Length = 622

 Score =  356 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 111/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIINLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  + +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  ++  +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKSFE--DSKSLNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + S+  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       + +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + ++D+ I +
Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEINDSFINQ 616


>gi|220934121|ref|YP_002513020.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995431|gb|ACL72033.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 633

 Score =  356 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 114/642 (17%), Positives = 256/642 (39%), Gaps = 38/642 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  +  W+A + ++++ +PF +WGL++  F  + +  V  V   ++P  ++   +
Sbjct: 1   MLQKIRDKATGWIAYVIVILISIPFALWGLNEY-FGGAPAQVVAEVNGVEIPARAYQQEF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+   ++Q  G  + S       + +  L  L+    + Q  ED G       V  EI 
Sbjct: 60  QQQRQQLAQMFGGRIPSGAVDENMMRENALQTLIRRELVAQMAEDKGFRISASAVASEIR 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   D  F  + +   +  +  +  E+     + +        +         +++
Sbjct: 120 AVPGFQR-DGVFDPERYRQIMESQRRSPAEFEARVAQAMLLEQFQSGYQRSAFLPEAMVE 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   E R V                S   +  ++ ++ + ++ PE  R++Y+L D  
Sbjct: 179 DFVRLRHERRQVSVHRFPAEAYAERVQVSEDDIAAFYAEHGEQFQTPERLRLAYLLLDDA 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------AFQ 288
              +++ ++ D+L+ EYE+  +++  PE R    ++   +  AD             A  
Sbjct: 239 TLAEQVSVTEDDLRREYEQRSDRFTQPEERRASHILIRVEPGADADTVAAAEARAREARA 298

Query: 289 SLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            ++ G+ F ++A           +   LG  ++  I D +L   +F++ + GD +  +  
Sbjct: 299 RIEAGEDFAEVARAVSDDPMAETAGGDLGYIARGDI-DPTLEGVLFTM-RVGDVSQPVRT 356

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR-LEEFLALGTSMDE 403
             G  I  +++I+ +    F+ V+ ++  + R  +      E  +R L E      +++ 
Sbjct: 357 GLGLQIVRLTDIEAARREPFEAVRDEVEAEFRSRRVEGLHIELTERLLTESFEQPGTLEP 416

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT-VALPDGS 462
            +       + +   D+  +    + +A+ P   ++L   F ++    ++   + LPDG 
Sbjct: 417 AAEA---TGLSIAFTDWFTRQGADEGIASEP---EVLRVAFSQEVRQGRNSDLIDLPDGR 470

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V++ E  PA  R LEEV  +++      ++     +   +  LE  + G  +    +
Sbjct: 471 VVVVRLHEYEPAAPRPLEEVAEEIRLQLVWEESRRLAEADGAR-ALEALQAGSGWAQSLE 529

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIEN--GLSYVVFKVTN 578
            L     T   ++R   E         S+VF+   P +    F   +     YV+  +  
Sbjct: 530 GLPGESTTELWVSRDSGE---LPGAVTSRVFTLNRPADDRPVFSGLSLRDGDYVLVALYA 586

Query: 579 SKVGPV--QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           S+ G V     ++    L  +      +++   L++Q  + +
Sbjct: 587 SEPGEVRPARMNEARQQLANLYGGLEFEALYQALEAQAKIRI 628


>gi|89901031|ref|YP_523502.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
 gi|89345768|gb|ABD69971.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
          Length = 640

 Score =  356 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 108/646 (16%), Positives = 230/646 (35%), Gaps = 47/646 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + +RK ++  +A +  +++   F+++G+     S    S V  VG   +    +    
Sbjct: 1   MFDFVRKHTKIMMA-VMFLLIIPSFVLFGIDGYNRSRDAGSVVARVGSHDITQGEWDAVH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           K E   +   +   ++++   S       L+ LV    L Q  +   L     R+   + 
Sbjct: 60  KSEADRLRASMP-NLDAKLLDSPQARYATLERLVRDRVLAQAADKFKLTTSDARLARNLH 118

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +P        D K   D +   +  +G+  + +     + LS   V          +  
Sbjct: 119 ENPSIAALRQPDGKLDMDRYRQLVGSQGLTPEGFEARVRQDLSVRQVEAGVGETGFAAAS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           + D A   +FE R V           +   P++A L  +++  +  +++PE+  I Y++ 
Sbjct: 179 VADVALNAFFEKREVQIASFTAADFASKVSPTDAELNAFYKANQALFQSPEHASIEYVVL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293
           D+   +K I IS  ++++ YE+N E+    E R    ++    K+A  A +   K     
Sbjct: 239 DMDSVKKSIVISEADMKSYYEQNAERLSGKEERRASHILITAAKDAPAADRQKAKARADE 298

Query: 294 ---------KKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                      F  +A++     G + +   L  F++  +      D++F++ KKGD + 
Sbjct: 299 LLKTVRQSPDSFADVAKKNSQDTGSAANGGDLDFFTRGAMVKP-FEDAVFAM-KKGDISE 356

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FGY I  +++IK     SF+E++  I   ++  +A  +  E  +     +     
Sbjct: 357 VVESDFGYHIIKLTDIKKPVQRSFEELRAGIEADLKTQQAQARFAETAEAFTNGVYEQSD 416

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV--A 457
           S+  ++ + K+       V                   + L  +F  D    K +T    
Sbjct: 417 SLKPVADKLKLEIKTATNVLR----QPAAGTTGALSNAKFLAAIFNTDSIEKKRNTEAME 472

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
                    ++ +  PAR     +V   V +     K AE    +  + +L +       
Sbjct: 473 TAPNQLTAGRVTQYTPARTLPFADVSRVVHERVVADKAAELAKKEGQEKLLAW------- 525

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
               K   A+ +    I    ++ +      ++         +  F   +     Y V +
Sbjct: 526 ----KASPAAAVMPAPIVVSRDQAQNVPPQVLTAALRADTAALPAFVGVDLGAKGYSVVR 581

Query: 576 VTNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           V      +        +  +   Q  +     +    LK ++   +
Sbjct: 582 VNKIVPRQAPAEAAAKQDRAQYAQWWSGAETQAYSDLLKERFKAQI 627


>gi|145640678|ref|ZP_01796261.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021]
 gi|145274604|gb|EDK14467.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae
           22.4-21]
          Length = 622

 Score =  356 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 112/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  + +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  ++  +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKSFE--DSKSLNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + S+  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       + +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFGMQLLRSHQSELQIQLIQGLRERAKIEVNDSFINQ 616


>gi|309973498|gb|ADO96699.1| Putative peptidyl-prolyl cis-trans isomerase [Haemophilus
           influenzae R2846]
          Length = 622

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 113/637 (17%), Positives = 249/637 (39%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + V+K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  + +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  ++  +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          +    +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLHTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + S+  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       + +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFGMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616


>gi|226941261|ref|YP_002796335.1| peptidyl-prolyl cis-trans isomerase [Laribacter hongkongensis
           HLHK9]
 gi|226716188|gb|ACO75326.1| Probable peptidyl-prolyl cis-trans isomerase [Laribacter
           hongkongensis HLHK9]
          Length = 607

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 124/642 (19%), Positives = 244/642 (38%), Gaps = 61/642 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E ++K   T V KI L  + + F+ +G+     + +  + +  VG +K+       + 
Sbjct: 1   MFEFVQK--NTLVIKIILGAVALTFVGFGVGSYT-AATDDAYLAKVGGEKIYKQDIERAL 57

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                      G   +S       + +++L++L+    L       G+      +   IA
Sbjct: 58  N----------GQPADSA------VRQQVLESLIRQKLLLADAGQHGMRVTDAELRRVIA 101

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   +  F    +   L  + ++ +++       L     +  FV     S   ++
Sbjct: 102 GIPAFQD-NGHFDSKRYEEYLQSQYMSAEQFQARIRDELMVQQQLSAFVDATFVSPGAVE 160

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  +   E R ++   L            +A + ++++  K  ++ PE  R+ Y+L  + 
Sbjct: 161 RVHKLLAEQRQINQYRLTAAQFLPGVKVDDADVQRFYDSNKARFQTPEKVRLEYVLLSLE 220

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-FQSLK-------- 291
           E  K +++S  +++  YE++K +    E R V  ++    K A  A    LK        
Sbjct: 221 ELAKTVQVSEADVRKYYEEHKAELAGDEQRQVAHILIAVPKGASAADKARLKTEAEAIVK 280

Query: 292 ----KGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                  +F  LA+E+    G +     LG F +  +      DS F LAK G  +  + 
Sbjct: 281 EVRSNPARFAALAQEKSADPGSAAKGGDLGWFGRGVMVKP-FEDSAFKLAK-GQVSDPVE 338

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMD 402
             FGY I  V  IK   T     ++ DI  ++   KA    ++  + L +       S+ 
Sbjct: 339 TEFGYHIIKVEGIK---TPDLSTMQADIHARLARQKAGALYRQQLETLGDVSYQQSDSLK 395

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
            +S   K+    +   ++  K   G  + A P  ++  F              + L +  
Sbjct: 396 PVSEALKLP---VQQTEWIVKGQPGSGIVANPKVDEAAFSDDVF-KGKHNSEVIDLGNER 451

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V++  + PA+ + L EV   ++K+    K A E++ KA + +L   K GK       
Sbjct: 452 SVVVRVAAAEPAKLQPLAEVAPVIRKEL-ADKAARELAVKAGEKLLAELKAGKTPD---- 506

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGLSYVVFKVTN--- 578
               +     Q++R D      G D    VFS  V  +  +     G  + + ++     
Sbjct: 507 ---VAWSAAQQVSRRD--PASLGRDVQRAVFSASVSKLPAYAGAAEGDGFTLVRIDRLLP 561

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           +      E+ + +  L Q+     + S +  L++ Y VT+  
Sbjct: 562 AGALTGAERQQLVGMLAQLQTAADVTSYLNGLRAAYPVTLKQ 603


>gi|167855404|ref|ZP_02478170.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis 29755]
 gi|167853470|gb|EDS24718.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis 29755]
          Length = 624

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 106/642 (16%), Positives = 231/642 (35%), Gaps = 38/642 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + S  WV KI   ++ + F++ G+   L +   S  V  V  +++    F  + 
Sbjct: 1   MIEKMHEKSGGWVFKIIFALVSLSFVLGGIGGGLMATDNS--VAKVNGEEISQQVFSRAK 58

Query: 61  KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            Q+  +++ ++G                 + IL+ LV    L Q+ + + ++    ++  
Sbjct: 59  NQQQNILNAQLGERFWDLMDNPIYVKQFHESILNGLVDDELLRQYAKSLKIDVSADQIKS 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI  SP F  +D KF+++++   L   G+    Y     + +    +    V        
Sbjct: 119 EIVNSPAFQ-QDGKFNNNLYQQALRNNGLTADGYAAIVYEGMLFAQIQEAIVNSSFTVPA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +   +   + R V     +          S   +  ++E  K N+  PE   + YI  
Sbjct: 178 QQELLAKLLLQKRQVRLATYSIAKEVNNQTASTEEMQAYYEANKANFVNPEKLTVEYISI 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           +  +   KI+++N+++   Y+ NK KY +     +  +    + EA+E  Q+L KG+ F 
Sbjct: 238 EPKDLANKIQVTNEQIDTYYQTNKAKYTTKGEAKIAHIQVATEAEANEIVQALAKGEDFA 297

Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           QLA+ + +          LG  +K  +   +  D+  ++   G  +  I     + I  V
Sbjct: 298 QLAKAKSQDKLSAAQGGDLGW-AKAGVFPKAFEDAA-NMLDAGKTSQPIKVDNAFHIIKV 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVS 412
                   V  ++VK  I + +R      +     + +         S++ +++   ++ 
Sbjct: 356 LERNVETVVPLEKVKAQITDTIRNELLLTEYSNITREMANVAFENSGSLEAVAKVANVLV 415

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP-----DGSYMWVQ 467
                          + V A    E++L  +F  +   +  ++ A+      +   M+V+
Sbjct: 416 HKTDAFTR-------ETVPAELDNEKVLRVLFDSEVRQNGQNSEAIDLSDATNTKTMFVR 468

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           +        +  +E  + V++  K  K  + +  KA   V   +K        G +    
Sbjct: 469 VSHYQAENVQTFDEAKSAVEQAVKQQKALKVLEEKATTQVAALNKGETVEVAFGASEELV 528

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK---CFPIENGLSYVVFKVTNSKVGPV 584
                       + +         VFS      K             VV  +     G  
Sbjct: 529 F----------AQAQITEPALAQAVFSMAKPAEKPTYQTARNTNGDVVVIALDKVSDGTA 578

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            E     +   Q     L + ++  L+ +  + V+ + + + 
Sbjct: 579 DEFKPLQAQFNQAERVVLRNDLLKDLRERAKIEVNQDFLDQL 620


>gi|145630100|ref|ZP_01785882.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021]
 gi|144984381|gb|EDJ91804.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021]
          Length = 622

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 112/637 (17%), Positives = 248/637 (38%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K +++++ E+   Y+ NK ++ +     +  + F N+++A   ++ L+KG  F
Sbjct: 239 LSADNISKNLQVTDIEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKVVYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  +   +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + S+  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSETPESKID-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       + +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616


>gi|301169728|emb|CBW29329.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Haemophilus
           influenzae 10810]
          Length = 622

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 109/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  + +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  ++  +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + ++  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLNENPESKVD-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  ++++        S       + +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSESKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + ++D+ I +
Sbjct: 580 QFGLQLLRSHQSELQVQLIQGLRERAKIEINDSFINQ 616


>gi|33597580|ref|NP_885223.1| peptidyl-prolyl cis-trans isomerase D [Bordetella parapertussis
           12822]
 gi|33574008|emb|CAE38331.1| peptidyl-prolyl cis-trans isomerase D [Bordetella parapertussis]
          Length = 671

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 106/657 (16%), Positives = 235/657 (35%), Gaps = 42/657 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M EIIR   R W+  I L+++   F++ G+      ++    + +V  Q V  S F  + 
Sbjct: 21  MFEIIRTH-RRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 79

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L  + Q++G   +     +  + +++L+ L+    L     D G     G +   IA
Sbjct: 80  RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 139

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     + +FS + +   LA +G++   +     + L+   V+            +  
Sbjct: 140 AIPQVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVAR 198

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +    + R+V           A    S   +  W++  ++  R PE  +  Y++ D  
Sbjct: 199 SVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEA 258

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------------NQKEADEAF 287
              + +++ ++++ + YE+NK ++  PE R V  ++                 K  + A 
Sbjct: 259 AATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMISIPPGASEEARKAAAAKAQEIAA 318

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           Q+      F +LA +  +     + G           L  +  +LAK    + V+     
Sbjct: 319 QAAADPAGFAELARKNSQDTGSAAQGGDLGWAPLPAPLQQAAQALAKD-QVSGVVDTPTA 377

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISR 406
           + I  V++ +P       EVK ++ +++R   AS +  +    +   +     S+   + 
Sbjct: 378 FHILKVTDFQPGSVKPLSEVKDEVVSEIRKQLASARFADMATDMTRLVYDQRDSLQPTAD 437

Query: 407 REKIVSIDLPLVDFAGKDVKGK------------EVAAIPYKEQLLFRVFGKDDPLSKDH 454
           +  +       +   G     +            ++   P   Q+LF      + L+   
Sbjct: 438 KLGLKLRTAGGITRTGLLPAEQAGAGSAAGGDDAQLLDNPRVRQVLFSPDVLREKLNSG- 496

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
            + L   + + V++    P+    LE+V   ++      + A+         +       
Sbjct: 497 VIELTPDTMLAVRVAAVEPSHIPPLEQVRASIEDRLLGERAAQAARQAGEAAL------- 549

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-GLSYVV 573
           K+ +               ++R D +N       +  V       +  +     G  YVV
Sbjct: 550 KSVQADASATPEGFAPAIVVSRQDAQN--LPRRVLDAVMRQAPSPLPAYTGVELGADYVV 607

Query: 574 FKVTNSKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
            ++   + G   E+  D   + L+    +    +V+  L+ QY V +     +    
Sbjct: 608 ARIEKVEAGQSTEQDLDLLKTQLSGAWGQAEDAAVLRQLRDQYKVQILPEAAEAIKG 664


>gi|145628054|ref|ZP_01783855.1| lipoprotein signal peptidase [Haemophilus influenzae 22.1-21]
 gi|144979829|gb|EDJ89488.1| lipoprotein signal peptidase [Haemophilus influenzae 22.1-21]
          Length = 622

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 112/637 (17%), Positives = 251/637 (39%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  + +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +  +LG  ++  +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKAKSLDKISGENGGNLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + S+  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       + +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFGMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616


>gi|145632388|ref|ZP_01788123.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 3655]
 gi|144987295|gb|EDJ93825.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 3655]
          Length = 622

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 114/638 (17%), Positives = 246/638 (38%), Gaps = 35/638 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   S +  AK  L ++ + FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLSNSKAAKFILGLITLSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           + QE    +Q+ G      ++ S      L + I++ ++    L Q+++++ L      +
Sbjct: 60  YNQEFEARAQREGEAF-MAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMI 118

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I   P F  K  KF + V+   L +  +    Y       L    +           
Sbjct: 119 KRAIVTDPNFQVK-GKFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIV 177

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
              +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI
Sbjct: 178 PAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYI 237

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                   K +++++ E+   Y+ NK ++ +     +  + F N+++A   ++ L+KG  
Sbjct: 238 DLSADNISKNLQVTDIEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKVVYEELQKGAN 294

Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  +A+ +        +   LG  +   +P  +  D+  +L + G ++  I+    Y I 
Sbjct: 295 FADVAKTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIV 352

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            V   K     S + VK  I + +R +    +     K+  +          ++   +  
Sbjct: 353 LVQERKA---QSLENVKAQIVDLVRKSLIESRYFSLEKQASDKAFE--DSKSLNTAAQAA 407

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIK 469
            + +   D+  +    + V A      +++ +F  D          + + D   + V++ 
Sbjct: 408 GVKVQESDYFSR----QNVPAGLNFPNVIYTIFESDSTNIGMNSEPINVGDYHTIIVRVL 463

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +      + LEE   D++   K  K    ++ KA Q V + S+  ++  D     G +  
Sbjct: 464 DRKAEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSENPESKID-----GINFS 518

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD- 588
           +       +N++        S       E +      +    VV  +   + G + EK+ 
Sbjct: 519 SEQTFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKEL 578

Query: 589 -KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 579 SQFGMQLLRSHQSELQLQLIQGLRERAKIEVNDSFINQ 616


>gi|33601983|ref|NP_889543.1| peptidyl-prolyl cis-trans isomerase D [Bordetella bronchiseptica
           RB50]
 gi|33576421|emb|CAE33499.1| peptidyl-prolyl cis-trans isomerase D [Bordetella bronchiseptica
           RB50]
          Length = 671

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 106/657 (16%), Positives = 235/657 (35%), Gaps = 42/657 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M EIIR   R W+  I L+++   F++ G+      ++    + +V  Q V  S F  + 
Sbjct: 21  MFEIIRTH-RRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 79

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L  + Q++G   +     +  + +++L+ L+    L     D G     G +   IA
Sbjct: 80  RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 139

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     + +FS + +   LA +G++   +     + L+   V+            +  
Sbjct: 140 AIPQVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVAR 198

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +    + R+V           A    S   +  W++  ++  R PE  +  Y++ D  
Sbjct: 199 SVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEA 258

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------------NQKEADEAF 287
              + +++ ++++ + YE+NK ++  PE R V  ++                 K  + A 
Sbjct: 259 AATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMISIPPGASEEARKAAAAKAQEIAA 318

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           Q+      F +LA +  +     + G           L  +  +LAK    + V+     
Sbjct: 319 QAAADPAGFAELARKNSQDTGSAAQGGDLGWAPLPAPLQQAAQALAKD-QVSGVVDTPTA 377

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISR 406
           + I  V++ +P       EVK ++ +++R   AS +  +    +   +     S+   + 
Sbjct: 378 FHILKVTDFQPGSVKPLAEVKDEVVSEIRKQLASARFADMATDMTRLVYDQRDSLQPTAD 437

Query: 407 REKIVSIDLPLVDFAGKDVKGK------------EVAAIPYKEQLLFRVFGKDDPLSKDH 454
           +  +       +   G     +            ++   P   Q+LF      + L+   
Sbjct: 438 KLGLKLRTAGGITRTGLLPAEQAGAGSAAGGDDAQLLDNPRVRQVLFSPDVLREKLNSG- 496

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
            + L   + + V++    P+    LE+V   ++      + A+         +       
Sbjct: 497 VIELTPDTMLAVRVAAVEPSHIPPLEQVRASIEDRLLGERAAQAARQAGEAAL------- 549

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-GLSYVV 573
           K+ +               ++R D +N       +  V       +  +     G  YVV
Sbjct: 550 KSVQADASATPEGFAPAIVVSRQDAQN--LPRRVLDAVMRQAPSPLPAYTGVELGADYVV 607

Query: 574 FKVTNSKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
            ++   + G   E+  D   + L+    +    +V+  L+ QY V +     +    
Sbjct: 608 ARIEKVEAGQSTEQDLDLLKTQLSGAWGQAEDAAVLRQLRDQYKVQILPEAAEAIKG 664


>gi|229843938|ref|ZP_04464079.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae 6P18H1]
 gi|229812932|gb|EEP48620.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae 6P18H1]
          Length = 622

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 113/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + V+K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  + +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  ++  +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + S+  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       + +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFGMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616


>gi|148828172|ref|YP_001292925.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           PittGG]
 gi|148719414|gb|ABR00542.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           PittGG]
          Length = 622

 Score =  356 bits (913), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 112/637 (17%), Positives = 249/637 (39%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  + +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  ++  +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + S+  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSENPESKID-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       E +      +    VV  +   +   + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQSSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFGMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616


>gi|289207782|ref|YP_003459848.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           K90mix]
 gi|288943413|gb|ADC71112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           K90mix]
          Length = 633

 Score =  356 bits (913), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 114/637 (17%), Positives = 248/637 (38%), Gaps = 31/637 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  +  W+A + + ++ +PF +WGL +  F  SG      V    +      N  
Sbjct: 1   MLQAIRDRASGWLAYVIIGLITIPFAVWGLGEY-FGGSGPLVAAEVNGTDIQVRDVHNEA 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   +++  G  +  +     G+  + L+ L+    L Q  +  G +A    +  EI 
Sbjct: 60  RAQRDQMARMFGGQIPDDLLDEEGIRMQALETLIRQELLRQAADSAGFKAAGDSILREIR 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P+F  +  +FS + +   L  + ++  ++     + +  + + G       P++ L+D
Sbjct: 120 GMPVFQ-EGGQFSRERYAQLLNAQRLSPSDFERDIGRSIILSQLQGGIQATGFPADALVD 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R   + +             +  +  ++E  +D++   E  RI+Y+  D  
Sbjct: 179 DFSRLRNQTRVASWRIFPVDDFDQPDVVDDKAIEAYYEANQDDFTTEERVRIAYLQLDPE 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQSLKKGKK 295
             E  +++S D+++  YE N+ +Y  PE+R V Q+   +     + + +E    L  G+ 
Sbjct: 239 ALEDAVDVSEDDVRQHYEVNRSRYEEPELREVRQIRIQDTGEEGEAKINELRDRLDDGED 298

Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F +LAE   +         SLG  ++  + D +L   IF+L + G  +  +    G+ I 
Sbjct: 299 FAELAEAYSEDSLSADRGGSLGEIARGDL-DRTLETIIFTLPE-GLISRPVRTDRGWFIL 356

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS-MDEISRREKI 410
            V++I+ +    F++V+ ++   +R   A +        L++ +       D +    + 
Sbjct: 357 EVTSIQEARPQPFEDVRDEVERDLRDRSAEQM---QIDALDDLMGQAAEYPDSLEPAAEA 413

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             +++   D+  +   G  +A         F     +D  +    + L DGS + ++I+E
Sbjct: 414 TRLEIQTSDWFTRG-SGDGIAQHRSIRNAAFDPRVLEDGHN-SEAIDLQDGSTVVLRIEE 471

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P+  R L EV  ++++  +    A+       +L+        +          +   
Sbjct: 472 HEPSEVRPLAEVEDEIRERLRREAAADAAREAGEELIARLRDA--DDWADAIEDDDAWQM 529

Query: 531 TNQINRMDNENKFFGYDGISQ--VFSGPVEMVKCFPIEN---GLSYVVFKVTNSKVGPVQ 585
             ++ R    +   G  G  Q  +F           I     G       + +      Q
Sbjct: 530 EREVRRDSPVDGDNGVPGGLQQHLFRLSAPGEDAVEISGTRLGTGDFAVAILHEVRLDEQ 589

Query: 586 EKDKFISY-----LTQMMNKDLLDSVIAYLKSQYSVT 617
           E D  +       +          + +A+L+S+  +T
Sbjct: 590 EADAAMRQQARELMRNAYASAEFRAYLAWLESEADIT 626


>gi|148826351|ref|YP_001291104.1| lipoprotein signal peptidase [Haemophilus influenzae PittEE]
 gi|148716511|gb|ABQ98721.1| lipoprotein signal peptidase [Haemophilus influenzae PittEE]
          Length = 622

 Score =  356 bits (913), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 113/637 (17%), Positives = 247/637 (38%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNSVYQRILQQNRLTSDGYASILRASLPLEQIQNGIANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISKNLQVTDVEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  +   +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAD 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIKE 470
           + +    +  +    + V A      +++ +F  D          + + D   + V++ +
Sbjct: 409 VKVQESGYFSR----QNVPAGLNFPNVIYTIFESDSTNIGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + S+  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSENPESKID-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       E +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616


>gi|319775064|ref|YP_004137552.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           F3047]
 gi|317449655|emb|CBY85861.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           F3047]
          Length = 622

 Score =  356 bits (913), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 111/637 (17%), Positives = 251/637 (39%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  + +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  ++  +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +     +    ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKF--LNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + ++  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENSLNEKAQQAVKKLNENPESKVD-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       + +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFGMQLLRSHQSELQLQLIQGLRERAKIEVNDSFINQ 616


>gi|229846060|ref|ZP_04466172.1| lipoprotein signal peptidase [Haemophilus influenzae 7P49H1]
 gi|229811064|gb|EEP46781.1| lipoprotein signal peptidase [Haemophilus influenzae 7P49H1]
          Length = 622

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 113/637 (17%), Positives = 247/637 (38%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNSVYQRILQQNRLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  K +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISKNLQVTDVEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  +   +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAD 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIKE 470
           + +    +  +    + V A      +++ +F  D          + + D   + V++ +
Sbjct: 409 VKVQESGYFSR----QNVPAGLNFPNVIYTIFESDSTNIGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + S+  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSENPESKID-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       E +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616


>gi|221198210|ref|ZP_03571256.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD2M]
 gi|221209208|ref|ZP_03582200.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD2]
 gi|221170946|gb|EEE03401.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD2]
 gi|221182142|gb|EEE14543.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD2M]
          Length = 644

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 237/659 (35%), Gaps = 45/659 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V +V   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDESANVAAVNGHKITRVEFDGAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDQARQALGAQFDIKAFDTPDHRKQVLDGLIQQRVLADETQRLHLTASDNAVREALL 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D     + +   ++ +G+  ++Y +     L+   +    V        
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLMSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L  +      + R V  +VL      +   P++A L  +++ +K  +  PE   I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDYASKVQPTDAQLAAYYDAHKQQFATPETATIEYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + ++ +++  Y+ N   + +     V  +                + +A++
Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +K     F Q+AE+  +          LG  ++       +  D+ F+L K+G+ +
Sbjct: 300 LLADVKARPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGEIS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+    G+ I   +++KPS    F EVK +IA  ++   A++   ++ +     +    
Sbjct: 359 GVVQSDLGFHILKATDVKPSIVKPFAEVKDEIAATLKQQYAAKAFSDNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL--SKDHTV 456
            S+   + + K+      +       +      +     + L  VF  D     +    +
Sbjct: 419 KSLQPAADKYKLTIQTATVTPTPNPQL---PATSPLNNAKFLAAVFANDSVKAHNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ +  PA    L+ +   V++     + AE         + E  K  K+
Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDAIKDAVRQKVVAEQAAELAKKDGAAKLAELQKS-KS 534

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                     S   +  ++             +S V+    + +  +   +     Y ++
Sbjct: 535 TEGFAAAQKISRTQSQGLS----------PAALSAVYKVDPKTLPAYVGVDLGADGYAIY 584

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           +V     G   +  +  +   QM   +     ++ +  L+ +  V ++ +   +    +
Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVEAQSEGEAYLTALRDRSKVKLYGSTASQSQGND 643


>gi|319897486|ref|YP_004135683.1| peptidyl-prolyl cis-trans isomerase d [Haemophilus influenzae
           F3031]
 gi|317432992|emb|CBY81363.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           F3031]
          Length = 622

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 109/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  + +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELEKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  ++  +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ K+ Q V + ++  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKSQQAVKKLNENPESKVD-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       + +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + ++D+ I +
Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEINDSFINQ 616


>gi|221067844|ref|ZP_03543949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni KF-1]
 gi|220712867|gb|EED68235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni KF-1]
          Length = 632

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 112/647 (17%), Positives = 243/647 (37%), Gaps = 50/647 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IRK S+ +V  +  +++   F+  G++   F+ S S TV  V    +    + N+ 
Sbjct: 1   MFESIRKHSK-FVMILLFLLIIPSFIFVGVNQNYFTES-SQTVARVDGHDITQQDWDNAH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E   +  +   + +++   S       L+ LV    L      + L     ++   + 
Sbjct: 59  RAESDRLRAQNPSM-DAKLLDSPEARYATLEKLVRDRVLAAAATKMHLTTPDAQLVRTLR 117

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     + + + +  +G+  + +  +  + L+   V+G        +  
Sbjct: 118 EIPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLGAVSSTSFTTAA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L QA    ++ R +     +         P+ A L  ++E +   ++ PE   + Y+  
Sbjct: 178 QLQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYESHTSQFKQPEAATVEYVQL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293
           D+   EK I +S D+L+  Y++N  +   PE R    ++    K+   A +   K     
Sbjct: 238 DLATVEKSIVLSEDDLRTYYKENAARLAGPEERRASHILINAAKDLPAAEREKAKAKAEQ 297

Query: 294 ---------KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                    K F Q+A+    + G + +   LG F ++ +      +++F + K+GD + 
Sbjct: 298 LLAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGRDAMVKP-FEEAVFKM-KQGDISD 355

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FG+ I  ++ IK     +F+E++  +   ++  +A  K  E  +     +     
Sbjct: 356 VVESDFGFHIIELTGIKQPKVPTFEEMRPKLEADLKQQQAQRKFAEVAEAFSNAVYEQSE 415

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+  ++ + K+       V                  ++ L  +F  D   +K +T  V 
Sbjct: 416 SLQPVAEKFKLSIQKAENVTREP----APGAQGPLASKRFLEALFSADSLENKRNTDAVE 471

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE-YSKEGKN 516
           L   + +  ++    PA  + ++EV   +K+ +   ++AE    +    + E  +K G  
Sbjct: 472 LAPSNLVAGRVLSYAPAHIQSMDEVGAKLKQLYVAHQSAELAKQEGQAKMAEWKAKPGTA 531

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                  +G             ++ K    + +      P   +  +   +     Y V 
Sbjct: 532 QLPAAVEVG------------RDQAKDLPREVLDAALRAPTNALPAWEGVDLGNAGYAVI 579

Query: 575 KVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           KV      P Q+    ++  +  TQ  +   + +    LK  + V +
Sbjct: 580 KVNRIAQRPAQDAQVLEQQKAQFTQWASMAEVMAYYDQLKKIFKVQI 626


>gi|260580093|ref|ZP_05847923.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae RdAW]
 gi|260093377|gb|EEW77310.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae RdAW]
          Length = 622

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 112/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  + +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  ++  +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + S+  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       + +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616


>gi|299531702|ref|ZP_07045107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
 gi|298720418|gb|EFI61370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
          Length = 632

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 110/646 (17%), Positives = 249/646 (38%), Gaps = 48/646 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IRK S+ +V  +  +++   F+  G++   F+ S S TV  V    +    + N+ 
Sbjct: 1   MFESIRKHSK-FVMILLFLLIIPSFIFVGVNQNYFTES-SQTVARVDGHDITQQDWDNAH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E   +  +   + +++   S       L+ LV    L      + L     ++   + 
Sbjct: 59  RAESDRLRAQNPTM-DAKLLDSPEARYATLEKLVRDRVLAAAAAKMHLTTPDAQLVRTLR 117

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     + + + +  +G+  + +  +  + L+   V+G        +  
Sbjct: 118 EIPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLGSVSSTSFTTAA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L QA    ++ R +     +         P+ A L  ++E + + ++ PE   + Y+  
Sbjct: 178 QLQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYEAHTNQFKQPEAATVEYVQL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
           D+   ++ I +S D+L+  Y++N  +   PE R    ++               + +A++
Sbjct: 238 DLAAVQQGIVLSEDDLRTYYKENAARLAGPEERRASHILINAARDLPAAEREKAKAKAEQ 297

Query: 286 AFQSLKK-GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               ++K  K F Q+A+    + G + +   LG F +E +      +++F + K+GD + 
Sbjct: 298 LLAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGREAMVKP-FEEAVFKM-KQGDISD 355

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FG+ I  ++ IK     SF+E++  +   ++  +A  K  E  +     +     
Sbjct: 356 VVESDFGFHIIELTGIKQPKVPSFEEMRPKLEADLKQQQAQRKFAEAAEAFSNAVYEQSE 415

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+  ++ + K+    +  V          +       ++ L  +F  D   +K +T  V 
Sbjct: 416 SLKPVAEKFKLSIHKVENVTREP----APDAQGPLANKRFLEALFSADSLENKRNTDAVE 471

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           L   + +  ++    PA  + ++EV   +K+ +   ++AE    +    + E+  + +  
Sbjct: 472 LAPSNLVAGRVLSYAPAHTQSMDEVGEKLKQLYVAHQSAELAKQEGKAKMAEWKAKPE-- 529

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
                 L A++       R          + +      P   +  +   +     Y V K
Sbjct: 530 ---AAQLPAAVEVGRDQAR------DLPREVLDAALRAPTNALPAWEGVDLGNAGYAVIK 580

Query: 576 VTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           V      P Q+    ++  +  TQ  +   + +    LK  + V +
Sbjct: 581 VNRIAQRPAQDAQVLEQQKAQFTQWSSMAEVMAYYEQLKKTFKVQI 626


>gi|224368972|ref|YP_002603136.1| PpiD1 [Desulfobacterium autotrophicum HRM2]
 gi|223691689|gb|ACN14972.1| PpiD1 [Desulfobacterium autotrophicum HRM2]
          Length = 630

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 114/645 (17%), Positives = 239/645 (37%), Gaps = 36/645 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+++R+ + +W+ KI L ++ + F+  G+          + V  +  Q +  + +  S+
Sbjct: 1   MLKLMRENTGSWIIKILLGLIVLVFVFLGMGSI--GAKRGNEVAMINDQPITLNEYQRSY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +  +  + Q+ G  +N E  + + + K+ LD L+    +    + + +E  +  +   + 
Sbjct: 59  QNIIEQMRQRFGDNLNDEILQMLQVKKQALDRLIDERLISGEADRLKVEVSNQELANSLL 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  K+  F    +   L+R  ++ + +     + L    V  +    +  S+    
Sbjct: 119 DIPAFR-KNGVFDLATYKVVLSRNRMSPESFEAMQLQALREQKVRDLVFSTLSVSDQEAR 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                      +DY+V N      IA      LT ++E  K+ Y++     + Y+ F V 
Sbjct: 178 AWYTHSKTQVGIDYLVFNPVAYKDIA-VDAKALTDFYESNKEKYKSEAELTVKYLEFAVK 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--------- 291
           + + ++ IS+DE++A Y++N ++Y  PE      ++    ++ADEA              
Sbjct: 237 DYQDRVTISDDEIKAYYDENLDQYKVPEKVEARHILIRVPQDADEATVEAARNEAETIHA 296

Query: 292 ---KGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
               G+ F  LA+   +         LG+F+++ +     A++ FSLA  G+ +  +   
Sbjct: 297 KAVGGEDFSLLAKTFSQGPTKDDGGYLGTFARDAMVKP-FAEAAFSLAS-GEISKPVRTQ 354

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           FG+ +  V    P+ T +  +V  +I   +   +       D  +  + +  G  ++   
Sbjct: 355 FGWHVIKVEAKLPASTTALDKVAAEIRKTLSTAELKNLAYSDAGKAFDGIIDGDDLE--- 411

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
              +   I    V  AG   +      +   +      F        D    + D  Y+ 
Sbjct: 412 ---QAGLITGKKVLTAGPFTQKGPGDVVADSQGFARAAFAMSLNEIGD-VKEIGDNYYII 467

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
             +++  P     LE V   V KD       E     A   + E  K+ K  + + K  G
Sbjct: 468 KPVEKIDPE-VLPLEAVRDTVTKDLTAQLQQERAKKDAQAFLDEL-KDNKEIKAVAKAKG 525

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
                ++   R     +F     I+ V     P   V    +     + V      K+  
Sbjct: 526 LEAKASSLFVRGATVPEFGPNSEITAVAFELSPENPVHPAVVTGSGGFYVISFREQKLPD 585

Query: 584 VQEKDK----FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
             E D+        + +     + +  +  LK    + +    + 
Sbjct: 586 AAEIDENLDGVKVSMARSKQGSVYNEWLGELKMAAKIDIKKGFLD 630


>gi|264677817|ref|YP_003277723.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
 gi|262208329|gb|ACY32427.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
          Length = 632

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 111/646 (17%), Positives = 246/646 (38%), Gaps = 48/646 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IRK S+ +V  +  +++   F+  G++   F+ S S TV  V    +    + N+ 
Sbjct: 1   MFESIRKHSK-FVMILLFLLIIPSFIFVGVNQNYFTES-SQTVARVDGHDITQQDWDNAH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E   +  +   + +++   S       L+ LV    L      + L     ++   + 
Sbjct: 59  RAESDRLRAQNPTM-DAKLLDSPEARYATLEKLVRDRVLAAAAAKMHLTTPDAQLVRTLR 117

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     + + + +  +G+  + +  +  + L+   V+G        +  
Sbjct: 118 EIPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLGSVSSTSFTTAA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L QA    ++ R +     +         P+ A L  ++E + + ++ PE   + Y+  
Sbjct: 178 QLQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYEAHTNQFKQPEAATVEYVQL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293
           D+   ++ I +S D+L+  Y++N  +   PE R    ++    K+   A +   K     
Sbjct: 238 DLAAVQQGIVLSEDDLRTYYKENAARLAGPEERRASHILINAAKDLPAAEREKAKAKAEQ 297

Query: 294 ---------KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                    K F Q+A+    + G + +   LG F +E +      +++F + K+GD + 
Sbjct: 298 LLAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGREAMVKP-FEEAVFKM-KQGDISD 355

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FG+ I  ++ IK     SF+E++  +   ++  +A  K  E  +     +     
Sbjct: 356 VVESDFGFHIIELTGIKQPKVPSFEEMRPKLEADLKQQQAQRKFAEAAEAFSNAVYEQSE 415

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+  ++ + K+    +  V          +       ++ L  +F  D   +K +T  V 
Sbjct: 416 SLKPVAEKFKLSIHKVENVTREP----APDAQGPLANKRFLEALFSADSLENKRNTDAVE 471

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           L   + +  ++    PA  + ++EV   +K+ +   ++AE    +    + E+  + +  
Sbjct: 472 LAPSNLVAGRVLSYAPAHTQSMDEVGEKLKQLYVAHQSAELAKQEGKAKMAEWKAKPE-- 529

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
                 L A++       R          + +      P   +  +   +     Y V K
Sbjct: 530 ---AAQLPAAVEVGRDQAR------DLPREVLDAALRAPTNALPAWEGVDLGNAGYAVIK 580

Query: 576 VTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           V      P Q+    ++  +  TQ  +   + +    LK  + V +
Sbjct: 581 VNRIAQRPAQDAQVLEQQKAQFTQWSSMAEVMAYYEQLKKTFKVQI 626


>gi|296116178|ref|ZP_06834796.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977284|gb|EFG84044.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 639

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 121/633 (19%), Positives = 240/633 (37%), Gaps = 16/633 (2%)

Query: 6   RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQE 63
           R    +WV ++ + + F+ F+ WG+ D L ++    +  V  VG   +   ++  + + E
Sbjct: 3   RIFVDSWVGRVIVGLFFLTFVGWGVGDVLMNIGTERADVVARVGPDPILVPAYEQALRTE 62

Query: 64  LGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           +  I+Q++     S+   A    + +++L  L+    +     + GL      V  EI  
Sbjct: 63  MPQIAQQMHLDDPSQIPAATREQIAQQVLQRLILQDEVALAARNHGLLVPDSAVRAEIFA 122

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P F  K+ KF    F +RL   G+ E   I+      +   ++     G    +LL  +
Sbjct: 123 IPAFQDKNGKFDRTTFNNRLRSSGMTEARLIELVRAEQASKALMEPIRNGAGAPDLLTRR 182

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 + R VD + +        A PS+A   ++   +   + APEY+    ++     
Sbjct: 183 IFDLEAQTRKVDIVRVPFAA-QTPAAPSDAQARRFHTNHPWLFEAPEYRHARIVVLSPET 241

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
             + + I + +L   YE+  +++ +PE R+V+ +  PN+  A E   + + G  +  + +
Sbjct: 242 VARSMTIPDADLHHMYEQQAQRFNTPETRSVQVITAPNEARARELLTTWQGGASWDAMQK 301

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
             GK  + + +       IP   L   IF+       +P IH   G+ I  V ++ P+  
Sbjct: 302 SAGKDSASVEMDDIRISSIPSQELGRQIFNAPSD-TVSPPIHTDGGWAIFRVLHVTPAHI 360

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
             F+  +  +  Q    +   ++ +  ++L++ +A G  +D I      V++    VD  
Sbjct: 361 SDFESARPALQAQALAERVQAQIGDRVQKLQDAIAGGG-LDSIPSELGAVAV-AGNVDAH 418

Query: 422 GKDVKGK--EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
           G   +G    +       Q +          S    +  P+G++  V +    PAR    
Sbjct: 419 GMTQEGTPAPIPGSDAVRQAIVARVFSQPKGSSPELLQAPEGTWYAVSVDGVTPARPLSY 478

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           E+    V+  W            A  L  +    G     I   +   L+ +   +R  +
Sbjct: 479 EDSAQKVRDAWMDDARRHAADQTATTLYTQAQTMG-GLAHIQPAVP-DLVHSTPFSR-AH 535

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQ 596
           +     +D     F             +G  YV      S   P  ++   D+  + LTQ
Sbjct: 536 DVTEVPHDIAEIAFRLDHTGQSLMVEADGAFYVATLTDISTPDPASQRMLFDRIRTTLTQ 595

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
            +  D+  S    L+S      + + I   +  
Sbjct: 596 AVADDVEMSYAQALQSIVKPKPNPSAISAVMSA 628


>gi|212709201|ref|ZP_03317329.1| hypothetical protein PROVALCAL_00234 [Providencia alcalifaciens DSM
           30120]
 gi|212688113|gb|EEB47641.1| hypothetical protein PROVALCAL_00234 [Providencia alcalifaciens DSM
           30120]
          Length = 622

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 103/629 (16%), Positives = 245/629 (38%), Gaps = 20/629 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E +R  + +   K+ L ++ + F++ G++  +   S S+    V  Q +       ++
Sbjct: 1   MMEDLRTKANSPFIKVLLAIIILSFVLTGVAGYVIGGS-SNNAAEVNGQPISKEQLQQAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +QE   + + +G   +   S       L  + L+NL++   ++Q+  ++ L A   ++  
Sbjct: 60  QQERQSLQEYLGDKFSEVASNDNYMKELRTQALNNLINNQLINQYANELQLSASDQQIEQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I    +F   + KF  + +   L+R  IN   +     + L R  +   F G       
Sbjct: 120 AIFAMQIFQ-TNGKFDSEKYREILSRYNINADNFAAQIRQDLVRAQLGKSFTGTEFALPS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +      + + R V    L+   + A    +   L  ++   ++++ +PE  ++SY+  
Sbjct: 179 EVKAYAELFMQEREVRTATLSLAALQAKQTVTEDELKAYYAANQNSFISPEQVQVSYVEM 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D     K   ++++E+++ YE+N + +   E +    +   ++K+A      LK G  F 
Sbjct: 239 DAASMPK-ASVTDEEVKSYYEQNLKNFTKAEQKLYSMIQVASEKDAQALEAELKGGADFA 297

Query: 298 QLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            LA E+     S  + G                 +L +KG  +  I     YV+  + ++
Sbjct: 298 TLATEKSTDKFSAGNKGVIGWMEATSTPSEIISANLTEKGQVSAPIKVQDNYVLFRLDDV 357

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           KP     F EVK  I   +   K+ ++  +  +++ E  A     + ++  E I  + + 
Sbjct: 358 KPEAVKPFDEVKSSIETSLVQDKSVKQFYDLQQKVSE--AATNDNESLASVESISGLKVV 415

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPA 474
              +  +     E+       ++   R+  K+     +  V   +G   +V ++ +    
Sbjct: 416 TTGWFDRQNPPAELNFPKVVNEVFSERLVDKNGSTGINSDVINVEGDRAFVLRVAQYKAE 475

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
                E V  D++   K  K + ++ +   +L+    + GK    + K           +
Sbjct: 476 SIEPFETVNADIEALVKRQKASAQLKADGEKLLAAL-QAGKGDEAL-KAADTQFGAVQTV 533

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGP--VQEKDKF 590
           + +          G++   + P E    + I      + ++ ++    +G     E ++ 
Sbjct: 534 SFLAPATDI---TGVAMKMTPPSEGKPTYAIAYDQKDNLLIVQLDKVTLGQPTADELNQL 590

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
            +     M+  + ++++  L++   + V 
Sbjct: 591 ANEYRGAMSSAVNEALMLNLRTNAKIEVQ 619


>gi|134295955|ref|YP_001119690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
 gi|134139112|gb|ABO54855.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
          Length = 646

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 103/649 (15%), Positives = 233/649 (35%), Gaps = 47/649 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V +V   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D       +   L+ +G+  ++Y +     L+   +    V        
Sbjct: 120 SDPMIASLKKPDGTIDVQRYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKG 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              +      + R V  +VL +    A   P++A LT +++ +K ++  PE   I Y+++
Sbjct: 180 PAQRLSELAAQQREVQALVLKSSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239

Query: 238 DVHEKEKKI--EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------ 283
                      + ++ +++  Y+ N   + S     +  +       A            
Sbjct: 240 SPAAAAAAASAQPTDADIKKFYDDNPTHFRSEAQVRISHIFIAAASNASAADKAAAKAKA 299

Query: 284 DEAFQSLKKGKK-FIQLAEEQGKSL----SDISLGSFSKE-YIPDVSLADSIFSLAKKGD 337
           ++    +K     F Q+A++  +          LG  ++       +  D+ F+L K+G+
Sbjct: 300 EQLLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGE 358

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
            + V+    G+ I   + +KPS    F +VK  IA  ++   A++   ++ +     +  
Sbjct: 359 VSGVVESDLGFHILKATEVKPSVVKPFADVKDQIAVDLKQQYAAKAFTDNAEGFTSTVYE 418

Query: 398 -GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT- 455
              S+   + + K+      +       +        P   + L  VF  D   S+++T 
Sbjct: 419 KAKSLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNP---KFLAAVFASDSVKSRNNTQ 475

Query: 456 -VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
            V + + + +   + +  PA    L+ +   V++     + AE         + E  K  
Sbjct: 476 AVDVGNNTLISAHVVDYKPAAVPALDAIKDVVRQKVVAEQAAELAKKDGAAKLAELQKS- 534

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYV 572
           K+          S   +  +              +S V+    + +  +   +     Y 
Sbjct: 535 KSTDGFTPAQKVSRTQSQGLT----------PAALSAVYKVDSKTLPAYVGVDLGADGYA 584

Query: 573 VFKVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +++V     G     Q+       + Q+  +   ++ +A L+ +  V +
Sbjct: 585 IYRVNAVIPGTAVDPQQLAAAQQQMAQVEAQSEGEAYLAALRDRSKVKL 633


>gi|329123025|ref|ZP_08251596.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC
           11116]
 gi|327471956|gb|EGF17396.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC
           11116]
          Length = 622

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 111/637 (17%), Positives = 251/637 (39%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  + +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  ++  +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +     +    ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKF--LNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + ++  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLNENPESKVD-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       + +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616


>gi|30995417|ref|NP_439165.2| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae Rd
           KW20]
 gi|3183576|sp|P44092|PPID_HAEIN RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
          Length = 622

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 112/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    V  + +    F+N 
Sbjct: 1   MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE  + +Q+ G      +        L + I++ ++    L Q+++++ L      + 
Sbjct: 60  YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F  K  KF + V+   L +  +    Y       L    +            
Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  +   +F+ R      L+     A    S+  +  ++E  + ++  PE  ++ YI 
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                  + +++++ E+   Y+ NK ++ +     +  + F N+++A  A++ L+KG  F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+ +        +   LG  ++  +P  +  D+  +L + G ++  I+    Y I  
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   K     S + VK  IA+ +R +    +     K+  +          ++   +   
Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+  +    + V A      +++ +F  D  +       + + D   + V++ +
Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + LEE   D++   K  K    ++ KA Q V + S+  ++  D     G +  +
Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNGKAQQAVKKLSENPESKVD-----GINFSS 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
                  +N++        S       + +      +    VV  +   + G + EK+  
Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616


>gi|152986261|ref|YP_001348850.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PA7]
 gi|150961419|gb|ABR83444.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PA7]
          Length = 621

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 99/640 (15%), Positives = 231/640 (36%), Gaps = 44/640 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + V+ V   + G    + +   S+    V    +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   +        L +  L  L+    L Q  +D         +   I 
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D KF+ D F   + +   +  ++     + +    +     G    ++  L 
Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMNYSRLQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  L  +   + +  +   +  ++E +K  +  PE   + Y+     
Sbjct: 180 SFARLERQTR--DFATLAVKADASKSSVAEDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               ++++  ++L A Y+K        E R    ++            + + DE    L 
Sbjct: 238 SFFDQVKVKQEDLDALYQKEIANLS--EQRDAAHILIEVNDKTSDEQARAKIDEIKARLA 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  + +   + G    ++   + D +  +++++L K+G+ +  +   +GY
Sbjct: 296 KGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPYGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  ++     S + +K  + ++++     ++  E  K LE        + + ++  
Sbjct: 355 HLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEM 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466
            +          +G D        I    Q++   F  +  +  +    + L   + + +
Sbjct: 415 GLKVQTSQPFGRSGGD-------GIAANRQIVQAAFSTEVLEEAANSGAIELDPDTVVVL 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++KE    +++ LE+V   ++      K AE    +   L+ E  +            G 
Sbjct: 468 RVKEHNKPKEQPLEQVAAGIRDRLAAEKAAEAAKKQGEALIAELREGRAP-----SKPGE 522

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581
           +       +R     +      +  VF       K  P  +G++     YVV ++     
Sbjct: 523 AWKVVEAASRG---QEGIDPKLLQTVFRMQRPEAKDKPSFSGVTLANGDYVVIRLNGVSE 579

Query: 582 GP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                   EK  +  +L     ++   +    L+ +  V 
Sbjct: 580 PEQAISDDEKAMYRRFLASRSGQEDFAAFRRQLQDKAEVE 619


>gi|261855012|ref|YP_003262295.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
           neapolitanus c2]
 gi|261835481|gb|ACX95248.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
           neapolitanus c2]
          Length = 645

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 104/653 (15%), Positives = 247/653 (37%), Gaps = 37/653 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  +R+  + W+A   + ++ +PF++WG+ +  FS   +  V  V    +   +F  + 
Sbjct: 1   MLMDLRERIQGWIAYAIIGLISIPFVLWGVGEY-FSGGKNQPVAEVDGLPISQQAFEQAV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            Q+   I QK+G  V++E  +S+ LD+++LD +++   L  F++  G  A    V   I 
Sbjct: 60  SQQRQAIIQKLGGSVSAEMLQSLNLDQQVLDQMINERVLRVFVQKAGFRAPDAVVADLIR 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   D  F    + + +A  G     +     + +    +          +   LD
Sbjct: 120 SEPAFK-TDGAFDVKKYEAFVAARGTTVANFEAGLKQDIVMQTLENAISESTIVTAPELD 178

Query: 181 QAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           Q  +   + R +  + L+   V   +A P++  +  ++  +K  +  PE  ++ YI    
Sbjct: 179 QIVKLRDQTREIGMVRLDRARVIDTVAAPTDGAIEAYYAAHKGEFIRPERVKLRYIELSP 238

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                 +++++ +++  Y    +K  +  +RTV  ++    K AD A     K K     
Sbjct: 239 KTLAPSVKVTDAQVEQAYANYVKKQEAQVVRTVRHILISVPKNADGAAIEAAKNKALAAR 298

Query: 300 AE-----------------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
           A                  + G       LG  +   +      +++ +L K G+ +  +
Sbjct: 299 AAIVSGKTSFADEARAVSDDPGSKNKGGDLGEVAPGQMVKP-FEEAMDAL-KVGEVSEPV 356

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
              FG+ +  V+           +++  +  +++  +  +    + ++L +        D
Sbjct: 357 RTQFGWHLIEVTKESHPDIKPLADMRDKMVAEVQEQQVEKIYYNEGEKLSDQSYEHP--D 414

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
            +    + + + +   D+  ++  G  +AA     Q  F        L+ +  + L    
Sbjct: 415 SLIPSAEALGLKVQASDWLDRN-SGTGIAANEKVRQAAFSKEVLKQKLNSN-LIELGVNH 472

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + +++ +  PA    L EV   +    K     + ++  A  +  + + +  + + +  
Sbjct: 473 AVVIRVDQHEPATQLTLAEVKDQIATTLKDQAIDKALADAAKNIGKKLTAD-ADPQAVAT 531

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE-----MVKCFPIENGLSYVVF--- 574
             GA+ +    + R   +      + I   F+           K   + +G   +V    
Sbjct: 532 AAGATWVAPVWLKRTARDAPI-PAEAIQAAFALAPAPDGQLASKALALSDGNEALVVVEA 590

Query: 575 -KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            K  +      Q+K+   + + Q   +  L  ++  L+ +  +T++    +  
Sbjct: 591 IKDGDPATISEQDKEALSAQIQQAQAQQTLGVLLKALRDEAKITINQKAEKTA 643


>gi|313672156|ref|YP_004050267.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938912|gb|ADR18104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 623

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 120/650 (18%), Positives = 251/650 (38%), Gaps = 53/650 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML   R   +  +  IFL ++   F+     +WG+       +  +  + +    V F+ 
Sbjct: 1   MLRHFRN--QRKILSIFLWIVIASFIGTIFLVWGVGG---KGNQKTYALKIDDHVVSFNE 55

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  +++       Q  G  ++ +      L K++++ ++S   L      + L      V
Sbjct: 56  YKTTYENISNTYRQLFGANIDQKM-----LSKQVIEEIISKYLLLDEANRLKLPVTDAEV 110

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI + P F   + +F  + ++  L    I  + + +     L    + G+    +  +
Sbjct: 111 LAEIKKVPAFQ-VNGQFDKNRYLEVLRLNQITPETFENDIRVNLLLNKMKGVIATSVYVN 169

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +  + +  R   +   + YI ++           +  L +++ + K+ +  P   ++ Y+
Sbjct: 170 DQEILKEYRMRNKAVEISYIKVSPEDFEKDVKVDDKSLEKYYLENKNEFLEPTKAKLKYV 229

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEA 283
            F     +    IS  ELQ+ Y KNKE++   E      ++                K+A
Sbjct: 230 EFAPDNVKIDDNISEQELQSYYLKNKEQFKQDEQIKARHILIKIDNFQDNVSVEKALKKA 289

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           +E ++  K G KF +LA++    +S      LG   +  +      D++FSL K+G+ + 
Sbjct: 290 EEIYKKAKSGAKFEELAKQYSDDISKNNGGDLGFVKRGMMIK-EFEDALFSL-KEGEISK 347

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK-RLEEFLALGT 399
            +  SFGY I       P    +F EVK  I + +   K   + K+  + + +E  + G 
Sbjct: 348 PVKTSFGYHIIKNEKYLPKKEYTFAEVKDQIRSTILKDKIMSQFKQSVQAKYKEIQSFGN 407

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
               I +  K  S+++   D+  + V+   +      E +   +   D   ++  ++ L 
Sbjct: 408 LSGYIVKNPK--SLEIKETDYISEGVRDTFIP-----EDIKNELLKLD--KTELSSLYLI 458

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
           +G Y   +I + I      LE++   V K +   + +     KA++   +      N  +
Sbjct: 459 NGKYYLFEIADKITPTVPPLEKIKEKVIKSYVRKQASIIAKQKADEAAGK-----SNINE 513

Query: 520 IGKNLGASLLTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
             K L  +        R+D   N          +F+     +    I++G SY V  V N
Sbjct: 514 AAKFLNLAPQDVAAFKRIDPIPNIGVNSTMTEAIFTTKAPAMVKSSIQHGSSYYVIYVKN 573

Query: 579 SKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                     ++++    YL  +   +  +S I  LK    + +  NL++
Sbjct: 574 FLPASDDKLPEQRNTIAQYLINLKQTEAYNSYIEKLKKDARIDISPNLLE 623


>gi|330994544|ref|ZP_08318468.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter sp.
           SXCC-1]
 gi|329758398|gb|EGG74918.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter sp.
           SXCC-1]
          Length = 665

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 125/638 (19%), Positives = 263/638 (41%), Gaps = 18/638 (2%)

Query: 1   MLEII-RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFI 57
           ML  + R    +WV +I   + F+ F+ +G+ D L ++    +     VG + +   S+ 
Sbjct: 22  MLSFLYRVFVDSWVGRIVAGLFFLAFIGFGVGDVLMNIGTERADVAARVGSRPILVQSYQ 81

Query: 58  NSWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           N+ + E+  ++Q +     ++   A    + +++L  LV  A + +  +  GL      V
Sbjct: 82  NALQSEMPQVAQSMHLSDPAQIPPATREQVARQVLQRLVLQAEIAEAADRHGLIVPDSVV 141

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI   P F G + +F   +F  RL R G+ E   I+   +  +   ++     G    
Sbjct: 142 RDEIFSIPAFRGTNGQFDRALFNDRLHRTGMTEGRLIELVRQEQASRVLLEPIRDGATVP 201

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           ++++ +   F  + R++D + +        A P+ A L ++   +   + APEY+    +
Sbjct: 202 DVMVRRLFDFEAQTRTIDLVRVPFDSQQVTATPTPAQLARYHANHPWEFTAPEYRHARVV 261

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           +       + ++I++ ELQ  Y+   + + +PE R+V+ +  P Q  A            
Sbjct: 262 VLSADTIGRMLDITDAELQKSYQDQAQTFSAPERRSVQIVTVPTQDRATALRARWTDAGA 321

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           + Q+ ++ G+  + + L    +  IP   L  +IF+ A        +    G+V+  V+ 
Sbjct: 322 WAQVQKDAGRDAAAVELPGMKQTDIPSADLGRAIFA-APVDVTQGPVKSEGGWVVFRVTT 380

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI-- 413
           + P+ T  F +VK+ + +Q+  T+A   + +  ++L++ +A G  +D I      V++  
Sbjct: 381 LTPAHTTPFADVKQALHDQIAHTRAQALLADRVQKLQDAIAGGG-LDSIPADLGAVAVSG 439

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
           DL       +        +   ++ ++ RVF +    +    V  PDG++  V +    P
Sbjct: 440 DLDASGNTHEGTPAPIPGSDAVRQAVIARVFSQAKG-ASPVLVQGPDGAWYAVSVDGVTP 498

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
                L E    V   W+          +A     +   +G+            L  +  
Sbjct: 499 GHALDLAEAGPRVAAAWQADARRHMADQQATAFYNQA--QGQGGLAHVTPAVPGLEHSQP 556

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK-VGPVQEKD---K 589
           I+ M         +  + +F    ++ +    E G SYVV  +T      P  +KD   +
Sbjct: 557 ISPM-QPAPEIPREVAALIFRL-EKVGQNVMTEAGDSYVVATLTAINHPDPATQKDLYGR 614

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
             + LTQ M +D+       L++      +++ ++  +
Sbjct: 615 VRAGLTQSMGEDIEMGYGGALEAIVKPRPNESALRAVM 652


>gi|152978448|ref|YP_001344077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus
           succinogenes 130Z]
 gi|150840171|gb|ABR74142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus
           succinogenes 130Z]
          Length = 624

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 109/638 (17%), Positives = 252/638 (39%), Gaps = 34/638 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E +  A+  WV+K  L  + V F++ G+   L S S SS V  V  +++   +F   + 
Sbjct: 3   MEKLHHAANNWVSKAILGAIAVSFVVSGMYGYLGSSSDSSAV-KVNGEEISQQNFQQQYN 61

Query: 62  QELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            E   + Q++G      +     + GL + +L+ L+    L Q+ +++ +     ++  E
Sbjct: 62  NEFQRLEQQLGPQFAALSDTPEFTAGLRQTVLNRLIDQELLRQYGDELNIAVSDEQIKRE 121

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I R+P F   D KFS++ +   L    ++   Y  +  + L    +              
Sbjct: 122 IVRTPEFQ-VDGKFSNETYQLFLRNNNLSSDTYAQYLREALRLAQLQSALTDTAFLLPAN 180

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            +   + +F++R+V    L      A    +   +  ++   K  +  PE  ++ Y+   
Sbjct: 181 QEAFAKGFFQSRAVRLAHLPLAAEIAKQTVTEEEIQNYYNSNKSAFTVPELIKVQYLDLT 240

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
               EK +++++ E+Q  Y+ +K  + +     +  +   N+KEA +A+++L+KG  F  
Sbjct: 241 QAAAEKTVKVTDVEIQQYYQDHKADFTTKGQERLAHIQLANEKEALDAYEALQKGADFAT 300

Query: 299 LAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+E+       ++   LG  +   +P     D+   L + G ++  ++    + I  V 
Sbjct: 301 LAKEKSNDKVSAVNGGDLGWLNTGDLPK-EFEDAATIL-EVGHYSTPVNVDGQFHIIQVL 358

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
             K S  +  ++VK+ I   +R      +     K+  E      +   ++   K   ++
Sbjct: 359 ERKDSALLPLEQVKERITQAIRQDLVGNQFYAMEKQAAEKAFEDRT--SLAAAAKAAGVE 416

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIKESI 472
           +   D+  ++     V A      ++  +F  D          + + +   + V++ +  
Sbjct: 417 IKETDYFPRN----GVPAELNFPSVVNAMFDGDVSQGNVNSEPMNVGEQHSIVVRVLDHK 472

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
               R LE+   ++    K  K    + ++A  +V +         D     G +     
Sbjct: 473 AEGTRSLEDAHQEIADFLKRRKAETAMLAQAENIVKDLD------ADKPLPAGINFGAEE 526

Query: 533 QINRMDNENKFFGYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSKVGPVQE--K 587
           Q    +N++          +F+               N    ++  +   + G V    +
Sbjct: 527 QWVYAENKDPALNNI----IFTMQPKENGTAYKAAKANNGDVMIVALDKVEDGQVDNALR 582

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            +F + + Q   +D    ++  L+++  + V+++ I++
Sbjct: 583 QRFDAQVLQDKMRDAQLHLLQSLRAKAKIEVNESFIKQ 620


>gi|83951843|ref|ZP_00960575.1| hypothetical protein ISM_14810 [Roseovarius nubinhibens ISM]
 gi|83836849|gb|EAP76146.1| hypothetical protein ISM_14810 [Roseovarius nubinhibens ISM]
          Length = 609

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 119/596 (19%), Positives = 252/596 (42%), Gaps = 27/596 (4%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
                +V SVG  K+  + +  + + E+  +  + G  ++  +AR +GLD+ +L  LV+ 
Sbjct: 26  SGNVQSVGSVGDTKIDINDYARTLQNEIRALEAQRGERLSFAQARELGLDQAVLGRLVTT 85

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             L+   + IG+      +  EI     F G D KF    +   L + G+NE  + +   
Sbjct: 86  TALEDETQRIGISIGDANLRDEILNIQAFQGLDGKFDRQAYEFALQQAGLNETRFEEDMR 145

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQ 215
              +RT + G  V G+R      D    +  E R + + VL    +   + +P+   L  
Sbjct: 146 AETARTLLQGAVVAGVRAPEAYGDTLINYLGERRDISWAVLARADLQTGLPEPTEEDLAA 205

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           + E ++  +  PE K I+Y           +E+  D L+A Y++   +Y  PE R VE+L
Sbjct: 206 YHEAHQAEFTTPETKAITYAWLTPDMILDTVEVDEDALRAAYDERSAEYNQPERRLVERL 265

Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           VF +   A +A   ++ G+  F  L   +   LSD+ +G  ++  +   +  D++F+ A+
Sbjct: 266 VFLDSAAASDALARIESGEASFEDLVAARDLELSDVDIGDVTRAQLG--AAGDTVFA-AE 322

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            GD    +    G  +  V+ +  +  V F+E +  + +++   +A   ++     +++ 
Sbjct: 323 AGDVVGPVDTDLGPALFRVNGVLAAQVVPFEEAEPMLRDELAGDRARRVIESSMDNIDDL 382

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           LA G +++ +++      ++L  +D+  +  +G  +       Q    V   D P     
Sbjct: 383 LAGGATIEGLAQE---TDLELGKIDWHPEVTEG--IGGYESFRQAAAAVTTDDYP----Q 433

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
            + L DG    +++ E+I  R + +EEV   + + W      E + S++   +   S+ G
Sbjct: 434 VIELDDGGLFAMRLDETIAPRVQPVEEVRDALAEAWTRQTIVEALRSQSEADIAALSQ-G 492

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
            +F ++G      + T   I R   +      + I  VF      V+       L   + 
Sbjct: 493 TSFEELGFT---DISTAKDITRRGFDVDA-PREFIETVFEMEPGQVEIVEGNGRL--FLL 546

Query: 575 KVTNSKVGPVQEKDK------FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           ++        + +D         +     +++DL  ++   ++++  + +  + + 
Sbjct: 547 RLDAVNAPDAEAQDLVVLSQVLKNQAANSLSQDLFQALADDIRARAGIALDQSALN 602


>gi|90407416|ref|ZP_01215600.1| putative peptidyl-prolyl cis-trans isomerase D [Psychromonas sp.
           CNPT3]
 gi|90311447|gb|EAS39548.1| putative peptidyl-prolyl cis-trans isomerase D [Psychromonas sp.
           CNPT3]
          Length = 635

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 118/642 (18%), Positives = 259/642 (40%), Gaps = 37/642 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ S+   AKI L+V+ + F + G+S  L     +S  ++V   ++  +S    +
Sbjct: 1   MLDKMREGSQGIAAKIILIVIILSFALAGVSGYL-GGGNASVAITVNGDEISNASVEQEY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           K E   + Q+ G   +   +       +  +    L+S   + Q I D+ L     +V  
Sbjct: 60  KNERSRLQQQYGEQFDIIAASPGFVKQVRAQAKQTLISNLLIAQSIADMDLRIGDEQVKD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I + P F  K  +F+++ ++S L R      ++     + L R  ++   V       +
Sbjct: 120 AIRKMPEFQVK-GEFNNEQYLSTLRRASYTPAKFSQSIKQDLVRRQLLNTLVSSEFILPI 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +D   +   + R    + ++ R  P     S   +  ++++++ N+++ +   + Y+L 
Sbjct: 179 EIDNVDKLQAQQRVARILNISGRAFPQTTPISIKDIQAYYDQHEQNFQSLQQVSVDYVLL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK 292
           D H+  +K  IS+ + QA Y+ ++  Y   E R V  ++         K+A     +L+K
Sbjct: 239 DAHKLSQKTVISDVQAQAYYDDHQVDYQRVERRKVAHILVQGHSADALKKAQTILLALEK 298

Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  LA  + + +    +D +L  F    + D     + F+L  K   + ++  +FGY
Sbjct: 299 GADFSVLARAKSEDILSAKNDGALDWFEHG-VMDEQFDKASFALTAKAPLSDIVKSTFGY 357

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRR 407
            I  + +I+   T+ F +VK  +   ++   A E+  +  ++L E       S+DE +  
Sbjct: 358 HIIKLLDIQQKQTLPFAQVKATVMKTLKKENADERYYDLQQQLREVAFEAPDSLDEAA-- 415

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
             +V+  +  +    +D     +   P    LLF +  +++ L+ D    L D   + V+
Sbjct: 416 -GVVNTQIQHIALFSRD-NVPALLDDPALLNLLFDIDFREEGLNSD-VFELSDKRSIVVR 472

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           +     A    L++V   +K    + + +   +      VLE   +G++   + ++    
Sbjct: 473 VSNFKEAATESLDKVSDTIKSQL-SEQNSRAKAHDFTLQVLEKLNKGESVEALLQDKSLQ 531

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE-------NGLSYVVFKV---- 576
                 ++R   E        + +VF+           +           + + ++    
Sbjct: 532 FSKALTLSRYSRE---VNPQVVQKVFTLAKPQADKVTRDWVSTNDTGDTGFAIIELSKVL 588

Query: 577 -TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            T S       K++  + L +  ++    + I  L     + 
Sbjct: 589 DTKSATTMPALKEQLGAMLVRGGSEATYQAWIMQLMQNADIK 630


>gi|28198390|ref|NP_778704.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1]
 gi|182681032|ref|YP_001829192.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           M23]
 gi|28056460|gb|AAO28353.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1]
 gi|182631142|gb|ACB91918.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           M23]
 gi|307579500|gb|ADN63469.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 655

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 117/671 (17%), Positives = 243/671 (36%), Gaps = 64/671 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R+ +  W+A   + +L +PFL   +      V G   V  +              
Sbjct: 1   MLQKLREKTSGWIATAIIGLLVIPFLFV-IDVRYIGVGGKDDVAQLQASPTWWKSAPAFW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                  RQ +    F + + Q       + G   ++    ++   +K+LD L+    + 
Sbjct: 60  PISLLWQRQGISKQEFQSRFDQARLQQRAQQGEGFDAREFETLSNKRKLLDQLIEEHVMR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI--NEKEYIDHYTKM 158
              E  G+      V   IA    F  K  KF+ D +   LA+E      + Y  +   M
Sbjct: 120 LVAEGAGVVISDEAVRTIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYESYVRSM 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +  + +           N  L++      + R+ + + L    +   A+ S+  + +W+ 
Sbjct: 179 MQLSMIPSAIFDSGFVPNTELERILALLGQTRNAELVTLPALKL-DTAEISDMQIKEWYA 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF- 277
            ++D++R PE     Y+  D     +    S   L+  Y+  +      E R    ++  
Sbjct: 238 VHRDDFRQPETLSFEYVDLDAAHLPRP-TPSEAMLRKRYDAQQRGEAQNEQRKAAHILIT 296

Query: 278 -----PNQKEADEAFQSL-----KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323
                 +QK A+     L     K G  F  LA    ++ G   +   LG   +  +   
Sbjct: 297 AGADAASQKVAEAKAAKLVEEARKPGADFAALARINSQDPGSKDAGGDLGWVQRGMMVKP 356

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++F++ K G+    I   FG  +  +  IK +  + F+ V+  +A +       + 
Sbjct: 357 -FEDALFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQLAAEQTKEDIDKA 414

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + L    T +   S +  +    L  +           +AA P  +++LF 
Sbjct: 415 FNDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSR----RDAVGIAANPAVQRVLFN 470

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                +    D  + +     + +++      +   L++V   V    +  +  ++ +S 
Sbjct: 471 HDFIQEGKVSD-PIQINPNHSVVLRVIAHTTEQQLPLDKVREQVVAAVRADRAEKDEASA 529

Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS-----GPV 557
           A+ LV    K G+   ++ K     +     + R     +   +     +FS        
Sbjct: 530 ADALVARLQK-GETLEEVAKAEKLQITPLTGLQRT---AQVPAFAATRAIFSALSPVAGK 585

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
             V    +++G  Y VF VT    G     P ++K      L Q+     + + +  ++ 
Sbjct: 586 PTVGKVRLDDG-RYAVFTVTRVIPGDLTKLPEEQKAMLRQQLDQIEGTLAVHAYVDMMRK 644

Query: 613 QYSVTVHDNLI 623
           ++ VT+H + +
Sbjct: 645 RFKVTIHKSQL 655


>gi|308270798|emb|CBX27408.1| hypothetical protein N47_H22300 [uncultured Desulfobacterium sp.]
          Length = 632

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 116/639 (18%), Positives = 255/639 (39%), Gaps = 34/639 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK + +W+ K  L ++ V F+        F  + ++ V  V  + +    +  ++
Sbjct: 1   MLDFMRKNAGSWMIKAILGIIVVVFVF--WGVGSFRSNRANRVAKVNGEVITVREYQEAY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
              +  I  K+G   N E  ++    KK LD+L+    L Q  + +        +   I 
Sbjct: 59  NNLVEQIRAKLGTNYNEETLKAFNFKKKALDDLIVKKLLVQEAKKLKFRVTDDELVKLIG 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F   D  F+   +   L+R      E+     + L    ++      ++ S+    
Sbjct: 119 SIKAFQ-VDGVFNKKEYERVLSRNHTVPDEFEATVRESLIMERLISFITSSVKVSDNEAL 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +   +   + +VDY+         I +PS   L ++F+K K++YR  +  +++Y+LF   
Sbjct: 178 EWFNWKGASVNVDYVFFTPDKYNGI-NPSQKELNEYFDKNKESYRTEKKVKVAYLLFSPD 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288
               ++++ ++E++  YE N +K+ +PE      ++    + A            D  F+
Sbjct: 237 SFITQVKVDDNEVKEYYENNIDKFTNPETVEASHILCKIDEGANPAAVQAAKQKADNVFK 296

Query: 289 SLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            +K+G+ F +LA++     S      LG+F K+ + +   A   FS+ K+G+ +  +   
Sbjct: 297 MIKEGQPFEELAKKYSDCPSKADGGHLGAFGKKDMVEP-FASKAFSM-KQGEISEPVLTK 354

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           FG+ I  V  +     +  +E + +I  ++   KA +   ++ +++ +      +M+++ 
Sbjct: 355 FGWHIIKVEKVNKEKMLVLKEAESEIRKKLISEKAKKLAYDEAEKICDL---AINMNDLI 411

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
           +  +   + +   DF  K  K    AA    + L+     +           + +  Y  
Sbjct: 412 KASEKSGVKIKTTDFFSK--KDASAAAGADNQALMEAGVFEMSDKEISDVKEIGN-RYCV 468

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
            ++ + +  +   L++V   VK D       E+    A +++L   K GK+F       G
Sbjct: 469 AEVTDIMLPKIPVLKDVAETVKSDVIKEMQWEKAKKDA-EVLLSALKTGKDFTQESLKYG 527

Query: 526 ASLLTTNQINRMDNENKF-FGYDGISQVFSGPVE-MVKCFPIENGLSYVVFKVTNSKVGP 583
            +   T    R        +        F    +      P++    Y + +    +  P
Sbjct: 528 LTPHETGFFARSGPVGSIGYEPQLSEAAFKLSDDNKYAETPVKGKNGYYIMRFKERENPP 587

Query: 584 VQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
            Q    EK++ +  L +   ++   S +  +KS   + +
Sbjct: 588 EQDFDKEKERIVKALLEQKKENTFSSWLEKIKSSSEIII 626


>gi|78485440|ref|YP_391365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
           crunogena XCL-2]
 gi|78363726|gb|ABB41691.1| peptidyl-prolyl cis-trans isomerase D [Thiomicrospira crunogena
           XCL-2]
          Length = 638

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 110/642 (17%), Positives = 251/642 (39%), Gaps = 33/642 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++ W+A + + ++ + F ++G+            V  V  + V  + F+  +
Sbjct: 1   MLQSIRNHAQGWIAWVIVGLIILTFALFGIDQYA-KGDKIIVVAEVNGEDVTANEFLTLY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            ++   +  + G + + +  +   L  +++D L+    + Q+ +   +   + ++   I 
Sbjct: 60  SRQQARLKNQFGEMYD-QVVKDQQLRDEVMDALIESEVVRQWADSHNMMISNQQLSATIE 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            + +F  KD +F   ++   L + G+N   +     + L       + +     ++  L 
Sbjct: 119 SAEVFQ-KDGQFDQQLYQDILLQNGLNVARFEYEQRQFLIENQNRQLTMASAITNDTQLA 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q     F+ R V+Y+ ++ R     A  ++  +  ++ K+K+++  PE   +SY+L    
Sbjct: 178 QLAALQFQQRKVNYLRVDQRPFMQEAQITDDEIQTYYNKHKEDFITPEQVVLSYVLLSKK 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD---------EAFQSLK 291
           +   K+ + +  L+  Y+ NK+++  PE R    ++     E+          E    L 
Sbjct: 238 DLADKVSVDDAILKRFYQDNKDQFTQPEKRQASHILVKVDAESQDAEAQKTIKEIQAKLA 297

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            G+ F  LA+         ++G      ++ +   +   ++FS+ K  + +  +   FGY
Sbjct: 298 DGEDFAALAKTYSDDPGSANMGGDLGLFQQGMMVPAFDKAVFSM-KLNEISDPVKTEFGY 356

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  ++ I+P    +F EVK ++    R  +A ++  ++ ++L          D +    
Sbjct: 357 HLIKLTKIQPKKMQAFNEVKAEVETLYRRQQADKQYFDELEQLNTIAYEQA--DSLIPAA 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
             V + +   D   +     E+ +        F    K   L+       PD S +    
Sbjct: 415 DAVGLKIETTDPFSRVGGDDEITSNGKVITAAFSEEVKKSGLNSSAIEISPDVSVVVRVK 474

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
           K     + + L +V  D++K  K     +  +  A  L  +  K  +   D+ K+ G   
Sbjct: 475 KVID-EKQQSLADVKVDIEKILKREAGVKASAELAKTLREKLLKGEQKMADLKKD-GVEY 532

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSK--- 580
                + R   EN+         +F  P           + +  G S VV +V++ K   
Sbjct: 533 SNVGWLER---ENRRVLPQLTQAIFKAPKPKEGQPTYTTYALPTGDS-VVIEVSDVKEGN 588

Query: 581 -VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
                 +  +  + L Q+     +D+ I  + +   +   +N
Sbjct: 589 LPDDQSQLAQMKAALVQLAGVSEVDARIKAMVAAADIERKEN 630


>gi|190150329|ref|YP_001968854.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307263670|ref|ZP_07545279.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915460|gb|ACE61712.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306870983|gb|EFN02718.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 625

 Score =  352 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 110/644 (17%), Positives = 243/644 (37%), Gaps = 42/644 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + ++  V KI   ++ + F+I G+   L  V G +  V V   ++   +F  + 
Sbjct: 1   MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAR 58

Query: 61  KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G          E A+     + +L+ LV    L Q+ +++ L     ++
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  SP+F  +D KFS+D++   L   G++   Y     + +  + +    +G     
Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSEFNV 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
                   +   + R V     +          S   L ++++ +K     PE   + Y+
Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLTVEYV 235

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                +    +++++++++  YEKNK  Y +        +   N+ +A    + +K G  
Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295

Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F +LA+ +            LG       P  +   +  SL + G  + V++    Y I 
Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPK-AFEAAAASL-QDGQVSAVVNVDGAYHII 353

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKI 410
            V   K    +  ++VK  I   +R      +     + +         S++ +++   +
Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESLAQAGGV 413

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465
                            + V A    E++L  +F  +   S  ++ A+  G       M+
Sbjct: 414 KVQKSAQFTQ-------QNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMF 466

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V++ +    R + LEE   +V +  K  K  + + +KA + V   ++        GK+  
Sbjct: 467 VRVSDYQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNE--------GKDEK 518

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVG 582
            S      +     E++         VFS P      V           ++  +     G
Sbjct: 519 VSFGNAQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDG 576

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            ++E         Q     L + ++  L+++ S+ V+ + + + 
Sbjct: 577 SLEEFKPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620


>gi|261493077|ref|ZP_05989616.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261311256|gb|EEY12420.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 623

 Score =  352 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 112/641 (17%), Positives = 244/641 (38%), Gaps = 38/641 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + +   V KI   ++ + F+I G+   L S   S  V  V  +++    F N+ 
Sbjct: 1   MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQDNS--VAKVNGEEISQQLFNNTL 58

Query: 61  KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            +E   ++ ++G            +   ++ +L+ L+    L Q+ +++ L     ++  
Sbjct: 59  NREQNRLNAELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQYAKELKLGISADQIKS 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI  S +F  +D KFS++++   L    ++   Y     + + ++ +    +        
Sbjct: 119 EIVNSQMFQ-QDGKFSNELYQQTLRHNNLSADGYAAIVQEGMLQSQLQEGIINSDFNVPA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                 +   + R V     +          S   L  ++E  K    APE   + Y+  
Sbjct: 178 QQALLAKLLLQQREVRLAEFSVAKEMENQTVSEQELRAYYEANKTKLLAPEKLAVEYVTL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
              + E K+EI+N+++Q  Y++NK  Y +     +  +   ++ EA    Q+LK G+ F 
Sbjct: 238 SPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQALKNGEDFA 297

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+ +        +   LG       P  +  D++ +L   G  +  +     Y I  V
Sbjct: 298 TLAKNKSSDTLSANNGGDLGWAKAGTFPK-AFEDAVANLT-AGQMSAAVKVDNAYHIIKV 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVS 412
              KP   +   +VK  IA  +R      +     + +  +     +S++E+++   +  
Sbjct: 356 LERKPEQVIELAQVKDKIAQTIRQELVLTEYSTVAREMANKAFENNSSLEEVAKAGNVEL 415

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-----SYMWVQ 467
               L          + V      E++L  +F  +   +K ++ AL  G       ++V+
Sbjct: 416 QKTDLFTR-------ENVPTALQNEKVLKVLFEGELRQNKQNSDALDVGNDANPQTLFVR 468

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + +    R +  +E    V+   K  K  + + +K  + V   ++        GK++   
Sbjct: 469 VSDYDAERPQTFDEAKAAVENFVKAEKAEKALLAKVEENVKALNE--------GKSVDVK 520

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIENGLSYVVFKVTNSKVGPV 584
                 +  M  E +     G   +F+      K             V+  + N   G  
Sbjct: 521 FNAPQTLVYMQAEVENPVLAGT--IFAMKKAQDKTTYQMARNQKGDVVIVALDNITEGNA 578

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           ++         Q     L +  +  L+++ S+ V+++ +Q+
Sbjct: 579 EQFKTLAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQ 619


>gi|307250251|ref|ZP_07532205.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857692|gb|EFM89794.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 625

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 110/644 (17%), Positives = 243/644 (37%), Gaps = 42/644 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + ++  V KI   ++ + F+I G+   L  V G +  V V   ++   +F  + 
Sbjct: 1   MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58

Query: 61  KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G          E A+     + +L+ LV    L Q+ +++ L     ++
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  SP+F  +D KFS+D++   L   G++   Y     + +  + +    +G     
Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSEFNV 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
                   +   + R V     +          S   L ++++ +K     PE   + Y+
Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLTVEYV 235

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                +    +++++++++  YEKNK  Y +        +   N+ +A    + +K G  
Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295

Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F +LA+ +            LG       P  +   +  SL + G  + V++    Y I 
Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPK-AFEAAAASL-QDGQVSAVVNVDGAYHII 353

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKI 410
            V   K    +  ++VK  I   +R      +     + +         S++ +++   +
Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465
                            + V A    E++L  +F  +   S  ++ A+  G       M+
Sbjct: 414 KVQKSAQFTQ-------QNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMF 466

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V++ +    R + LEE   +V +  K  K  + + +KA + V   ++        GK+  
Sbjct: 467 VRVSDYQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNE--------GKDEK 518

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVG 582
            S      +     E++         VFS P      V           ++  +     G
Sbjct: 519 VSFGNAQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDG 576

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            ++E         Q     L + ++  L+++ S+ V+ + + + 
Sbjct: 577 SLEEFKPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620


>gi|33592803|ref|NP_880447.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis Tohama
           I]
 gi|33572451|emb|CAE42019.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis Tohama
           I]
 gi|332382216|gb|AEE67063.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis CS]
          Length = 651

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 106/657 (16%), Positives = 233/657 (35%), Gaps = 42/657 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M EIIR   R W+  I L+++   F++ G+      ++    + +V  Q V  S F  + 
Sbjct: 1   MFEIIRTH-RRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L  + Q++G   +     +  + +++L+ L+    L     D G     G +   IA
Sbjct: 60  RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     + +FS + +   LA +G++   +     + L+   V+            +  
Sbjct: 120 AIPQVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVAR 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             +    + R+V           A    S   +  W++  ++  R PE  +  Y++ D  
Sbjct: 179 SVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEA 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------------NQKEADEAF 287
              + +++ ++++ + YE+NK ++  PE R V  ++                 K  + A 
Sbjct: 239 AATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMISIPPGASEEARKAAAAKAQEIAA 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           Q+      F +LA +  +       G           L  +  +LAK    + V+     
Sbjct: 299 QAAADPAGFAELARKNSQDTGSAGQGGDLGWAPLPAPLQQAAQALAKD-QVSGVVDTPTA 357

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISR 406
           + I  V++ +P       EVK ++  ++R   AS +  +    +   +     S+   + 
Sbjct: 358 FHILKVTDFQPGSVKPLAEVKDEVVGEIRKQLASARFADMATDMTRLVYDQRDSLQPTAD 417

Query: 407 REKIVSIDLPLVDFAGKDVKGK------------EVAAIPYKEQLLFRVFGKDDPLSKDH 454
           +  +       +   G     +            ++   P   Q+LF      + L+   
Sbjct: 418 KLGLKLRTAGGITRTGLLPAEQAGAGSAAGGDDAQLLDNPRVRQVLFSPDVLREKLNSG- 476

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
            + L   + + V++    P+    LE+V   ++      + A+         +       
Sbjct: 477 VIELTPDTMLAVRVAAVEPSHIPPLEQVRASIEDRLFGERAAQAARQAGEAAL------- 529

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-GLSYVV 573
           K+ +               ++R D +N       +  V       +  +     G  YVV
Sbjct: 530 KSVQADASATPEGFAPAIVVSRQDAQN--LPRRVLDAVMRQAPSPLPAYTGVELGADYVV 587

Query: 574 FKVTNSKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
            ++   + G   E+  D   + L+    +    +V+  L+ QY V +     +    
Sbjct: 588 ARIEKVEAGQSTEQDLDLLKTQLSGAWGQAEDAAVLRQLRDQYKVQILPEAAEAIKG 644


>gi|115351959|ref|YP_773798.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
 gi|115281947|gb|ABI87464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
          Length = 644

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 101/647 (15%), Positives = 239/647 (36%), Gaps = 45/647 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V ++   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAINGHKITRVEFDGAF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D     + +   L+ +G+  ++Y +     L+   +    V        
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKG 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              +      + R V  +V       A   P++A LT +++ +K ++  PE   I Y+++
Sbjct: 180 PAQRLSELAAQQREVQALVQKTSDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + ++ +++  Y+ N   + S     V  +                + +A++
Sbjct: 240 SPAAAAASAQPNDADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +K     F Q+A++  +          LG  ++       +  D+ F+L K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGDVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+    G+ I   + +KPS    F +VK  IA Q++   A++   ++ +     +    
Sbjct: 359 GVVQSDLGFHILKATEVKPSVVKPFADVKDQIAVQLKQQYAAKAFTDNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            ++   + + K+      ++      +        P   + L  VF  D   S+++T  +
Sbjct: 419 KTLQPAADKYKLTIQTATVMPTPNPQLPPTSPLNNP---KFLAAVFASDSVKSQNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ +  PA    L+ +   V++     +  E         + E  K    
Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDTIKDAVRQKVVAEQATELAKKDGAAKLAELQK---- 531

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                           +++RM  +++      +S V+    + +  +   +     Y ++
Sbjct: 532 -----SKSADGFTPVQKVSRM--QSQGLTPAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584

Query: 575 KVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +V     G     Q+       + Q+  +   ++ +A L+ +  V +
Sbjct: 585 RVNAVIPGTAVDPQQLAAAQQQMAQVEAQSEGEAYLAALRDRSKVKL 631


>gi|89095457|ref|ZP_01168368.1| peptidyl-prolyl cis-trans isomerase D, putative [Oceanospirillum
           sp. MED92]
 gi|89080287|gb|EAR59548.1| peptidyl-prolyl cis-trans isomerase D, putative [Oceanospirillum
           sp. MED92]
          Length = 627

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 111/637 (17%), Positives = 242/637 (37%), Gaps = 32/637 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+  +AKI + ++ V F ++G+   +    GS+   +V  ++V     +   
Sbjct: 1   MLQSIRDNSQGIIAKIIVGLIAVTFALFGVESLVSLTGGSNAPATVNGEEVSQQELVQGM 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   +  ++G   +        +   +L+ L+    L Q  E+ GL      +   I 
Sbjct: 61  RLQRNQMLSQMGENADPGLLNDNLISSMVLEGLIEQKVLVQSAENQGLVFTDAMIDQLIV 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +  F   D KF    F + L   G++   Y     K          ++      +  L+
Sbjct: 121 STKDFQ-VDGKFDKVQFETVLRNAGLSPLSYRALVRKEKLTEQERIAYLLSAFTLSNELN 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      ++R   Y  L      A    S+  +  +F +    Y + E   I YI+ D  
Sbjct: 180 EIATLQNQSRDTRYFTLAAEPERAAQTVSDDEVADYFAQNSGQYLSDEQVAIEYIVLDRA 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---------ADEAFQSLK 291
           + EK +E++ DE+ A Y++  + Y + E+R    ++     E         A      L 
Sbjct: 240 DLEKDVEVTADEVSAAYQQMVDSYQAQELRQAAHIMVEISDEQEAAAAETKAKALLDRLN 299

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            G+ F  +A+      +   +G     +++        D++++L +KG  +  +   FGY
Sbjct: 300 AGEDFAAVAQSDSDDPASAEMGGDLGVNEKGTFSAEFEDALYAL-EKGQISEPVQTEFGY 358

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  + ++  S   +F+E K  I   +   KA  +       L++       + E +   
Sbjct: 359 HLIKLLDVVESEVPTFEEAKAGIERDLLNEKAELEFVAQLDTLKDVAFSSGDLVEPAETL 418

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
               +++   +   +      + + P    + F      + ++ D  + L     + ++I
Sbjct: 419 ---GLEIQTSELFSRAGNEAPITSEPKVLSVTFDPSFLQEGVNSD-PIELSSSKVVVLRI 474

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
            +    R+R L+EV   +       K AE +++KA+Q + +  K+G+    +    G+ +
Sbjct: 475 LDHQLPRERSLDEVKEVITATLLEEKVAEALTTKADQFIAKL-KQGEALESLAS--GSEV 531

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVF--KVTNSKV 581
           ++   I+R    ++         +F  P             + +G   +V   KVT +  
Sbjct: 532 ISKTDISRG---SQDLPEQLREALFEMPKPAEGEASYAAVDLLDGSKAIVALEKVTENAA 588

Query: 582 GPVQEKDKFISYLTQM-MNKDLLDSVIAYLKSQYSVT 617
              +E+ +++  L      +         LK +  + 
Sbjct: 589 DLNEEEQRYMGMLLNSRFGQQDYQDHSEQLKDKAEIE 625


>gi|116747610|ref|YP_844297.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696674|gb|ABK15862.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 632

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 103/638 (16%), Positives = 253/638 (39%), Gaps = 34/638 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML + R+ S++W+ K  L+++ + F+ WG   A +     + VV +  + +    + N +
Sbjct: 1   MLNLFREHSKSWMIKALLILVAIVFVWWG--GATYQSKSDTAVVQIDDEFISERDYYNVY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ +     ++G   + +    + L  ++LD L++   + +   ++GL A    V   I 
Sbjct: 59  EKMVTRYRTQLGKAWSEKLVEEMNLKGQVLDMLINRYLVSKAARELGLSASTEEVRRRIL 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P+F   D +F    +   L +E +  + +     + ++   ++      +  ++  + 
Sbjct: 119 EYPVFLN-DGRFDQLTYERVLRQERLTPEGFEKDIAESIAYERLLNFIKRQVVVTDEEVT 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R  +    + Y + + +              ++F+ +++ Y  PE +R S +L+   
Sbjct: 178 ADYRTNYGQVQIAYALFDPKSFEDKVTVDEQGAQEYFQNHRERYMEPEKRRFSLVLYKPE 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288
               +  ++ D+++  Y+ +  +Y   +     Q++F              + EA++   
Sbjct: 238 AYMDQAGVTGDDMRRYYDDHISEYRHEQQVRARQILFRLKEDAAEEEIAKARSEAEKVLA 297

Query: 289 SLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             +KGK F +LA +  +      +   LG+F++  + +   +D+ F++ KKG+ + ++  
Sbjct: 298 EARKGKDFAELARKYSQDTATAKNGGDLGAFTRGQMLEP-FSDAAFAM-KKGEISDLVET 355

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
             G+ I  V  I P  T SF+E +  I   ++  KA E   E  ++L + +     + + 
Sbjct: 356 PDGFHIIKVEEIIPEKTTSFEEARSGIEQAVKRQKAREAAYEKARKLLDQVYAKKDLAKS 415

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           +  + +  +    +  A  D        +    + LF +  KD        +      Y+
Sbjct: 416 AEEQNMP-VTGGDMWIAETDPLPGFQTPLADISRKLFELPEKDF-----SDIFDTPQGYL 469

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
             Q+    P +    ++V   V+KD +  +       KA +L+    K   +       L
Sbjct: 470 IAQVTGIQPPQVPSFDKVKQRVEKDCRAERARVLAQQKAAELLDAARKA-NSLETAASGL 528

Query: 525 GASLLTTNQINRMDNENK--FFGYDGISQVFSGPVEM-VKCFPIENGLSYVVFKVTNSKV 581
             ++  ++  +R   +          + QVF            +E G  ++V ++   ++
Sbjct: 529 KLAVRKSDWFSRHAPDKDLRLLRGGAVDQVFRLEENQPFPDSSLEFGNRFLVCQLLGRRL 588

Query: 582 GP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
                 + +   +  LTQ     +  + +   + +  +
Sbjct: 589 PEGELEKVRADIVKRLTQQKQSMMWTAWLQEQRGKSKI 626


>gi|194364618|ref|YP_002027228.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia R551-3]
 gi|194347422|gb|ACF50545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia R551-3]
          Length = 651

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 107/659 (16%), Positives = 221/659 (33%), Gaps = 48/659 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-------------- 46
           ML+ +R  +  W+  + L +L +PFL   + ++     G+  V  V              
Sbjct: 1   MLQKLRDKTSGWIVTVILGLLMIPFLFV-IDNSYLGGVGAQNVAKVSAPPTWWRSAPSWW 59

Query: 47  ------GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++QE     Q+ G   +     S      +LD L+    + 
Sbjct: 60  PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESNESKMAVLDQLIDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA--REGINEKEYIDHYTKM 158
              E  G+    G V   I   P F   + KF+ + +   LA         ++ +   + 
Sbjct: 120 LVGEQAGVVIGDGAVREYITTIPAFLDSNGKFNENNYRLALAGGNPPRTPTQFQELVRES 179

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+   L        A  ++A + QW++
Sbjct: 180 LQQSVIPSGLQNSGFVTQAETERLLKLLGETRDVELAALPEVP-ADTAPVTDAQIKQWYD 238

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R  E   + Y+  +              L+  YE  K K+ SPE R    ++  
Sbjct: 239 SHGKDFRQAESVSLEYVEINGGNLPAPTAADEATLRKRYEDEKAKFTSPEQRQASHILLT 298

Query: 279 NQKEADEAFQSLKKGKKFIQL--------AEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
                 +A +   + K             +E+ G       LG   +  +      D++F
Sbjct: 299 GDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKEQGGDLGWVERGAMVKP-FEDALF 357

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           + AK GD    +   FGY I  V+ ++     SF+EV+  +A +           E   R
Sbjct: 358 A-AKAGDVIGPVKTDFGYHIIKVAAVRGGEGKSFEEVRDTLAAEQLKADGERGFNELAGR 416

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
           L + +    S  +++   K V++ L  +    +                   V  +D   
Sbjct: 417 LVDAI--NKSPSDLAAAAKEVNLPLQTLGPITRATASGIATDPAVLRAAFSDVLVQDGTA 474

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
           S    +       + +++    P +   L++    V    +  +   + S KA   VL  
Sbjct: 475 SDPIALGGATNHSVVIRVAAHTPEQAMPLDKAREQVIAAIRADR-QRQASDKAADAVLAK 533

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIEN 567
            K G   + +  +    L     + R          +    +FS PV          ++ 
Sbjct: 534 LKAGATLQSLAASEKLQLSPMPGLPRS---QPVPTPEINRAIFSAPVPAEGKPSYGKVDV 590

Query: 568 GLSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
               ++F V     G       +++ +    L+Q+       + I  ++ ++ +   + 
Sbjct: 591 NGHALLFAVNKVNPGDIKEVTAEQQKQLKDQLSQIDGMAAAKAYIEAMRKKFVIQTTEA 649


>gi|71276515|ref|ZP_00652790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Dixon]
 gi|71901997|ref|ZP_00684044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
 gi|170729736|ref|YP_001775169.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12]
 gi|71162692|gb|EAO12419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Dixon]
 gi|71728242|gb|EAO30426.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
 gi|167964529|gb|ACA11539.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12]
          Length = 655

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 117/671 (17%), Positives = 243/671 (36%), Gaps = 64/671 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R+ +  W+A   + +L +PFL   +        G   V  +              
Sbjct: 1   MLQKLREKTSGWIATAIIGLLVIPFLFV-IDVRYIGGGGKDDVAQLQASPTWWKSAPAFW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                  RQ +    F + + Q       + G   ++    ++    K+LD L+    + 
Sbjct: 60  PISLLWQRQGISKQEFQSRFDQARLQQRAQQGEGFDAREFETLNNKLKLLDQLIEEHVMR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI--NEKEYIDHYTKM 158
              E  G+      V   IA    F  K  KF+ D +   LA+E      + Y ++   M
Sbjct: 120 LVAEGAGVVISDDAVRSIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYENYVRSM 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +  + +           N  L++      + R+ + + L    +  +A+ SN  + +W+ 
Sbjct: 179 MQLSMIPSTIFDSGFVPNTELERILALLGQTRNAELVTLPALKL-DMAEISNMQIKEWYA 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF- 277
            ++D++R PE     Y+  D     +    S   L+  Y+  +      E R    ++  
Sbjct: 238 AHRDDFRQPETLSFEYVDLDAAHLPRP-TPSEAVLRKRYDAQQRGEAQNEQRKAAHILIT 296

Query: 278 -----PNQKEADEAFQSL-----KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323
                 +QK A+     L     K G  F  LA    ++ G   +   LG   +  +   
Sbjct: 297 AGADAASQKVAEAKAAKLVEEARKPGADFAALARINSQDPGSKDAGGDLGWVQRGMMVKP 356

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D++F++ K G+    I   FG  +  +  IK +  + F+ V+  +A +       ++
Sbjct: 357 -FEDALFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQLAAEQTKEDLDKE 414

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + L    T +   S +  +    L  +           +AA P  +++LF 
Sbjct: 415 FNDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSR----RDAVGIAANPAVQRVLFN 470

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                +    D  + +     + +++      +   L++V   V    +  +  ++ +S 
Sbjct: 471 HDFIQEGKVSD-PIQINPNHSVVLRVIAHTTEQQLPLDKVREQVVAAVRADRADKDGASA 529

Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS-----GPV 557
           A+ LV    K G    ++ K     +     + R     +   +     +FS        
Sbjct: 530 ADALVARLQK-GDTLEEVAKAEKLQITPLTGLQRT---AQVPAFAATRAIFSALSPVAGK 585

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
             V    +++G  Y VF VT    G     P ++K      L Q+     + + +  ++ 
Sbjct: 586 PTVGKVRLDDG-RYAVFTVTRVIPGDLTKLPEEQKAMLRQQLDQIEGTLAVHAYVDMMRK 644

Query: 613 QYSVTVHDNLI 623
           ++ VT+H + +
Sbjct: 645 RFKVTIHKSQL 655


>gi|91788924|ref|YP_549876.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
 gi|91698149|gb|ABE44978.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
          Length = 643

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 124/646 (19%), Positives = 244/646 (37%), Gaps = 47/646 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + IRK ++  +A +FL ++   F+++GL     S      V  V  + +  S +  + 
Sbjct: 1   MFDFIRKHTKVTMALLFL-LIVPSFILFGLDGYNRSREQGVAVARVDGKDIIQSEWDRAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E+  +   +   ++++   S       L+ LV    +    +   L     R+  E+ 
Sbjct: 60  QLEVDRLRASMPS-LDAKLLDSPQARYATLERLVRDRVIAAAADKFKLVISDQRLARELQ 118

Query: 121 R---SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           +          D     + +   L  +G++ + +  +    LS   V+         S+ 
Sbjct: 119 QSSEIASLRRSDGNLDMERYRQVLGSQGMSPEMFEANVRADLSNRQVLTGIGASGFSSSS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D A   YFE R +     N     A   P++A L Q+++  +  ++APE   I Y++ 
Sbjct: 179 AADLALNAYFEKREIQLARFNAADFAAKLSPTDADLDQFYKANEKLFQAPEQASIEYVML 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
           DV    K I I+  +L+  YE+N ++    E R    ++               + +A+E
Sbjct: 239 DVETVRKSITINEADLKTYYEQNLQRLSGAEERRASHILITSPKTASAEERQKAKAKAEE 298

Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
              ++KK    F  +A    ++ G + S   L  F++  +      D++FS+ KKGD + 
Sbjct: 299 LLAAVKKSPDTFADVARKNSQDPGSAPSGGDLDFFARGAMVKP-FEDAVFSM-KKGDISA 356

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT- 399
           V+   FGY I  +++IK     SF+E+K ++   ++  +A +K  E  +     +     
Sbjct: 357 VVESEFGYHIIRLTDIKAPKQRSFEEMKPELEADLKKQQAQKKFSEAAEAFTNGVYEQAG 416

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+  ++ R K+   D+       +         +    + L  +FG D    K +T  + 
Sbjct: 417 SLKPVAERLKL---DIKTASNVTRQPSAGT-TGVLANPKFLNALFGPDAVEKKRNTEAIE 472

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           +     +  +I +  PAR +   EV   V++ W   ++AEE             KEG   
Sbjct: 473 VAPSQLVSGRILQYTPARTQPFAEVKDIVRQRWLAQRSAEEAR-----------KEGLAK 521

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
               K   AS +    +     + +      I          +  F   +     Y + K
Sbjct: 522 LVAWKAAPASAVLAAPVLVSREQTQNLPVQVIDAALRVDASALPVFAGVDLGAQGYAIVK 581

Query: 576 VTNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           V         P     +  +   Q        +    LK ++   +
Sbjct: 582 VAKVMPRDARPDAAAKQERNQYAQWWTSAENLAYYNGLKERFKAEI 627


>gi|303251064|ref|ZP_07337250.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252639|ref|ZP_07534532.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650074|gb|EFL80244.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859884|gb|EFM91904.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 625

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 110/644 (17%), Positives = 243/644 (37%), Gaps = 42/644 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + ++  V KI   ++ + F+I G+   L  V G +  V V   ++   +F  + 
Sbjct: 1   MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58

Query: 61  KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G          E A+     + +L+ LV    L Q+ +++ L     ++
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  SP+F  +D KFS+D++   L   G++   Y     + +  + +    +G     
Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSEFNV 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
                   +   + R V     +          S   L ++++ +K     PE   + Y+
Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLMVEYV 235

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                +    +++++++++  YEKNK  Y +        +   N+ +A    + +K G  
Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRSAHIQLANETDAKAVAEQVKNGAD 295

Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F +LA+ +            LG       P  +   +  SL + G  + V++    Y I 
Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPK-AFEAAAASL-QDGQVSAVVNVDGAYHII 353

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKI 410
            V   K    +  ++VK  I   +R      +     + +         S++ +++   +
Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465
                            + V A    E++L  +F  +   S  ++ A+  G       M+
Sbjct: 414 KVQKSAQFTQ-------QNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMF 466

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V++ +    R + LEE   +V +  K  K  + + +KA + V   ++        GK+  
Sbjct: 467 VRVSDYQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNE--------GKDEK 518

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVG 582
            S      +     E++         VFS P      V           ++  +     G
Sbjct: 519 VSFGNAQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDG 576

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            ++E         Q     L + ++  L+++ S+ V+ + + + 
Sbjct: 577 SLEEFKPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620


>gi|167586935|ref|ZP_02379323.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ubonensis Bu]
          Length = 644

 Score =  351 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 104/658 (15%), Positives = 239/658 (36%), Gaps = 45/658 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +A + L+VL       G+         S+ V +V   K+    F  ++
Sbjct: 1   MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDESANVAAVNGHKITRVEFDGTY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   + +   +    K++LD L+    L    + + L A    V   + 
Sbjct: 60  RQQIDRARQALGAQFDLKSFDTPEHRKEVLDGLIQQRVLADETQRLHLTASDNAVREALL 119

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P+       D     + +   L+ +G+  ++Y +     L+   +    V        
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L  +      + R V  +VL      +   P++A L  +++  K ++  PE   I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDYASKVQPTDAQLAAYYDAQKQSFATPETATIQYLVY 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
                    + ++ +++  Y+ N   + +     V  +                + +A++
Sbjct: 240 SPAAAAANAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAAGDASAADKAAAKAKAEQ 299

Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339
               +K     F Q+A++  +          LG  ++       +  D+ F+L K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGDVS 358

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+    G+ I   + +KP+    F EVK  IA +++   AS+   ++ +     +    
Sbjct: 359 GVVQSDLGFHILKATEVKPAAVKPFAEVKDAIAVELKQQYASKAFSDNAEGFTSTVYEKA 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            S+   + + K+    +                +     + L  VF  D   S+++T  +
Sbjct: 419 KSLQPAADKYKL---TIQTATVTPTPNPALPPTSPLNNAKFLAAVFATDSVKSRNNTQAI 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +  ++ +  PA    L+ +   V++     + AE         + E  K    
Sbjct: 476 DIGNNTLISARVTDYKPAAVPALDAIKDAVRQKVIAEQAAELAKKDGAAKLAELQK---- 531

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                    A       ++R   +        +S ++    + +  +   +     Y ++
Sbjct: 532 -----SKATAGFAAAATLSR--TQAHGLTPAALSAIYKVDAKALPAYVGVDLGADGYAIY 584

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTVHDNLIQRYLDG 629
           +V     G   +  +  +   QM   D     ++ +A L+ +  V ++ +      DG
Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKLYGSTANAAQDG 642


>gi|77918655|ref|YP_356470.1| peptidyl-prolyl cis-trans isomerase [Pelobacter carbinolicus DSM
           2380]
 gi|77544738|gb|ABA88300.1| peptidyl-prolyl cis-trans isomerase [Pelobacter carbinolicus DSM
           2380]
          Length = 649

 Score =  351 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 117/662 (17%), Positives = 250/662 (37%), Gaps = 46/662 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML++IRK  R+ + KI    +   F+             S    S +  V    + +  F
Sbjct: 1   MLDLIRKKQRSVLVKIVFWTIIAAFVGTIFLVWGKGNSGSGGDGSAIAHVNGDAISYQDF 60

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++     + ++ G  +  E  + + L+ +  + LV+   L Q  ++  +  D   + 
Sbjct: 61  QITYQNMRQEMEKRFGRSLPPEIEKQLQLNTQAYEQLVNRLLLLQEADNRDIAVDKDELR 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             IA  P F  KD +F    +   LA + +  + +  +  + L    VV         ++
Sbjct: 121 QAIADIPAFQ-KDGQFDRKRYQEVLAYQHLTSRAFERNMREQLLLGKVVEAIKQDAEVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +D   R   E   + ++ L      +    ++  L  +F++ ++++R PE   + ++ 
Sbjct: 180 QDIDHEYRNRNEKIDLAFVKLAPGRYESKVTVTDEALQAYFQENREDFRQPEKIALRFVR 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEAD 284
           FD     K I + +  +Q  Y+K+K++Y+  E      ++F              +  A 
Sbjct: 240 FDPDNVAKDISVDDAAIQDYYDKHKDQYWVEEQVKASHILFRITAGLDEDGRQKKRAAAQ 299

Query: 285 EAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           +  +  + GK F QLA     + G ++   +LG F+   +      +  F+L K G  + 
Sbjct: 300 KVLEQARAGKDFAQLARTHSDDAGSAIKGGALGYFTHGSMV-PDFENVAFAL-KPGQISD 357

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
           ++  S GY I        + T    +V+ D+   +R   A +   +              
Sbjct: 358 LVETSMGYHIIKCEGRIEAQTKPLDDVRDDVRANLRKELARQDALDKAMMAYSAHRQDGD 417

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
           +D  +    +       V   G   +G+ +  +   ++L    F   +       V   D
Sbjct: 418 IDAAASANGL------QVRETGLFSRGEAIDGLGSDDELSMAAFALKEGELARPIVR--D 469

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
              +   +KE   +   +L+E   +V++ ++  ++       A  ++ E  K GK   D+
Sbjct: 470 QGVLTFVVKERHASYIPELKEARAEVERAYRRQESVGLARQAAEAVLAEL-KAGKKLADV 528

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV-EMVKCFPIENGL-----SYVVF 574
            +     +  T    R  +   F    G S+  +     + K  P+ + +      +VV 
Sbjct: 529 ARKEKVEMGETGLFPR--SYGNFIPRIGSSEALATAGFALTKEAPVADEVYVIDGRFVVA 586

Query: 575 KVTNSKVGPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
            + +             +++  + +     + LL  ++  LKS+  + V   L Q  L+G
Sbjct: 587 TLMHRMEADPAKLTDAAREQLRTSVLTNKREKLLTELVEKLKSEAKIKVEPTL-QNILEG 645

Query: 630 EK 631
           EK
Sbjct: 646 EK 647


>gi|239814796|ref|YP_002943706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           S110]
 gi|239801373|gb|ACS18440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           S110]
          Length = 636

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 102/646 (15%), Positives = 230/646 (35%), Gaps = 51/646 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M +  RK ++  +  +FL ++   F+++G+        G   V  V  Q +    +    
Sbjct: 1   MFDFFRKYNKIVMIFLFL-LIIPSFVLFGVERY-QGSGGEVKVARVDGQNITRPEWDAQH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E   I Q+    V+     S  +    L+ +V    L        +     R+    A
Sbjct: 59  RLETDRIRQQSP-NVDPTLLESDVMRYATLERMVRDRVLAAAAAKSNVTISEERLSRIFA 117

Query: 121 RS---PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           +      F   D KF  + F       G   ++Y       L+   ++    G       
Sbjct: 118 QDTGLAAFRTPDGKFDRESFQRV---TGRTPEQYEASMRAELATQQMLLGVTGTAFTPPA 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L       +++ R +     +     +    S+A +  +++ +   ++APE   I Y++ 
Sbjct: 175 LAAATINAFYDRREIQVARFSPESFASKVTVSDADVEAYYKAHTAQFQAPEQASIEYLVL 234

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADE 285
           D+   +K I ++  +L+  YE+N  ++ + E R    ++                 +A++
Sbjct: 235 DLEAAKKNISVNEADLKTYYEQNTARFGTKEERRASHILITAPASAPAADRAKAKAKAEQ 294

Query: 286 AFQSLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               +KK    F  +A    ++ G +     L   ++  +      D++F+L KKGD + 
Sbjct: 295 LLAEVKKAPATFADVARKNSQDPGSAEKGGDLDFVTRGAMVKP-FEDALFAL-KKGDISD 352

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGT 399
           V+   FGY I  +++IKP+    F++V+  I N++R  +A+++  +  +   + +     
Sbjct: 353 VVETEFGYHIIRLADIKPAVVPPFEQVRATIENEVRSQQATQEFAKAAETFTDAVYQQPD 412

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVA 457
           S+   + + ++       V            A +      L  +F  D  D       + 
Sbjct: 413 SLKPAAEKLRLTIQTASNVSRTP----PPGAAGVLANRNFLNALFAADSLDRKQNTEAIE 468

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           +        ++ +  PA    L EV   ++    T + A    ++    +  ++      
Sbjct: 469 VGSNQLAAGRVTQYTPAHPMPLAEVKDKIRAQLITERAAVMAKAEGEAKLAAWT------ 522

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
               K  GA+      ++R + + +      I          +      +     Y V +
Sbjct: 523 ---AKADGATFGAPVTVSRREAQAQPL--AVIDAALRADASKLPALVGVDLGTQGYAVVR 577

Query: 576 VTNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           VT          ++  +  + + Q +      +    LK ++   +
Sbjct: 578 VTKVVPRTPSAPEQTQQENAQVGQSVAAAEEVAYYNLLKERFKAEI 623


>gi|303253594|ref|ZP_07339732.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245913|ref|ZP_07527996.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247999|ref|ZP_07530028.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307254886|ref|ZP_07536708.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257049|ref|ZP_07538824.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259327|ref|ZP_07541054.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|302647514|gb|EFL77732.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306853132|gb|EFM85354.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855397|gb|EFM87571.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306862127|gb|EFM94099.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864420|gb|EFM96328.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866563|gb|EFM98424.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 625

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 110/644 (17%), Positives = 243/644 (37%), Gaps = 42/644 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + ++  V KI   ++ + F+I G+   L  V G +  V V   ++   +F  + 
Sbjct: 1   MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58

Query: 61  KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G          E A+     + +L+ LV    L Q+ +++ L     ++
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  SP+F  +D KFS+D++   L   G++   Y     + +  + +    +G     
Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNV 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
                   +   + R V     +          S   L ++++ +K     PE   + Y+
Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLTVEYV 235

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                +    +++++++++  YEKNK  Y +        +   N+ +A    + +K G  
Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295

Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F +LA+ +            LG       P  +   +  SL + G  + V++    Y I 
Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPK-AFEAAAASL-QDGQVSAVVNVDGAYHII 353

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKI 410
            V   K    +  ++VK  I   +R      +     + +         S++ +++   +
Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465
                            + V A    E++L  +F  +   S  ++ A+  G       M+
Sbjct: 414 KVQKSAQFTQ-------QNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMF 466

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V++ +    R + LEE   +V +  K  K  + + +KA + V   ++        GK+  
Sbjct: 467 VRVSDYQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNE--------GKDEK 518

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVG 582
            S      +     E++         VFS P      V           ++  +     G
Sbjct: 519 VSFGNAQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDG 576

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            ++E         Q     L + ++  L+++ S+ V+ + + + 
Sbjct: 577 SLEEFKPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620


>gi|254521282|ref|ZP_05133337.1| peptidylprolyl isomerase [Stenotrophomonas sp. SKA14]
 gi|219718873|gb|EED37398.1| peptidylprolyl isomerase [Stenotrophomonas sp. SKA14]
          Length = 651

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 109/659 (16%), Positives = 222/659 (33%), Gaps = 48/659 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-------------- 46
           ML+ +R  +  W+  + L +L +PFL   + ++     G+  V  V              
Sbjct: 1   MLQKLRDKTSGWIVTVILGLLMIPFLFV-IDNSYLGGVGAQNVAKVSAPPTWWRSAPSWW 59

Query: 47  ------GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++QE     Q+ G   +     S      +LD L+    + 
Sbjct: 60  PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESTENKLAVLDQLIDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA--REGINEKEYIDHYTKM 158
              E  G+    G V   IA  P F   + KF+ + +   LA         ++ +   + 
Sbjct: 120 LVGEQAGVVIGDGAVREYIATIPAFLDSNGKFNENNYRLALAGGNPPRTPTQFQELVRES 179

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+   L        A  ++A + QW++
Sbjct: 180 LQQSVIPSGLQNSGFVTQSETERLLKLLGETRDVELAALPEVP-ADTAPVTDAQIKQWYD 238

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R  E   + Y+  +              L+  YE  K K+ SPE R    ++  
Sbjct: 239 SHGKDFRQAESVSLEYVEINGGTLPAPAAADEATLRKRYEDEKAKFTSPEQRQAAHILIT 298

Query: 279 NQKEADEAFQSLKKGKKFIQL--------AEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
                 +A +   + K             +E+ G       LG   +  +      D++F
Sbjct: 299 GDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKAQGGDLGWVERGAMVKP-FEDALF 357

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           + AK GD    +   FGY I  V+ ++     SF+EV+  +A +           E   R
Sbjct: 358 A-AKAGDVIGPVKTDFGYHIIKVAAVRGGQGKSFEEVRDTLAAEQLKADGERGFNELAGR 416

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
           L + +    S  +++   K V + L  +    +       A           V  +D   
Sbjct: 417 LVDAI--NKSPSDLAAAAKEVKLPLQTLGPITRATASGIAADPAVLRAAFSDVLVQDGTA 474

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
           S    +       + +++    P +   L++    V    +  +   + S KA   VL  
Sbjct: 475 SDPIALGGASNHSVVIRVSAHTPEQAMPLDKAREQVIAAIRADR-QRQASDKAADAVLAK 533

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIEN 567
            K G   + +  +    L     + R          D    +FS P  +        ++ 
Sbjct: 534 LKGGATLQSLAASEKLQLSPMPGLPRS---QPVPTPDIHRAIFSAPAPVNGKPSYGKVDV 590

Query: 568 GLSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
               ++F V     G       +++ +    L+Q+       + +  ++ ++ V   + 
Sbjct: 591 NGHALLFAVNKINPGDIKEVTAEQQKQLKDQLSQIDGMAAAKAYVEAMRKKFVVQTTEA 649


>gi|319792645|ref|YP_004154285.1| ppic-type peptidyL-prolyl cis-trans isomerase [Variovorax paradoxus
           EPS]
 gi|315595108|gb|ADU36174.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           EPS]
          Length = 638

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 109/646 (16%), Positives = 239/646 (36%), Gaps = 51/646 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M +  RK ++  +  +FL ++   F+++G+            V  +    +    +    
Sbjct: 1   MFDFFRKYNKIVMIFLFL-LIIPSFVLFGVERY-QGSGRDEKVAHIEGGDITKPEWDAQH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E   I Q+    V+     S  L    L+ +V    L        +     R+    A
Sbjct: 59  RIETDRIRQQSP-NVDPTVLDSDALRYATLERMVRDRVLAAAAAKANMTVSEDRLSRIFA 117

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + P    F   D KF  + F   L   G   ++Y       +S   V+    G       
Sbjct: 118 QDPGLASFRTPDGKFDRETF---LRVTGRTPEQYEAQVRADMSTQQVLLGVSGTALTPPA 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L+      +++ R +           +    S+A +  +++ +   ++APE   I Y++ 
Sbjct: 175 LVAATVNAFYDRREIQVARFAPDGFASKVTVSDADIEAYYKDHTSQFQAPEQANIEYLVL 234

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
           D+   +K + ++  +L+  YE+N  ++ + E R    ++               + +A++
Sbjct: 235 DLDAAKKNVVVNEADLKTYYEQNTARFGTKEERRASHILITAPASMSAADREKAKAKAEQ 294

Query: 286 AFQSLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               +KK    F  +A    ++ G +     L   +K  +      D++F+L KKG+ + 
Sbjct: 295 LLAEVKKAPNTFADVARKNSQDPGSAEKGGDLDFVTKGAMVKP-FEDAMFAL-KKGEISG 352

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGT 399
           V+   FGY I H+ +IKP+    F++V+  I +++R  +A+++  +  +   + +     
Sbjct: 353 VVETEFGYHIIHLVDIKPAVVPPFEQVRATIESEVRAAQAAQEFAKAAEVFTDAVYQQPD 412

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           S+   + + K+       V           +A        L  ++  D    K +T A+ 
Sbjct: 413 SLKPAAEKLKLTIQTATNVPRTPAPGAKGPLA----SRNFLSALYASDSLERKQNTEAIE 468

Query: 460 DGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
            GS      ++ +  PA    L EV   ++    T + A    ++    +  ++      
Sbjct: 469 VGSSQLASGRVTQYTPAHPIPLAEVKDKIRAQLVTERAAVLAKTEGEAKLAAWT------ 522

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
               K  GA+      ++R+D +++      I          +      +     Y V +
Sbjct: 523 ---AKADGATFAAPVTVSRIDAQSQPMP--VIDAALRANAAKLPSLVGVDLGAQGYAVVR 577

Query: 576 VTNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           VT        P ++  +  + + Q +     D+    LK ++   +
Sbjct: 578 VTKVVPRTPPPPEQAQQESAQVGQSVTAAEADAYYKLLKERFKAEI 623


>gi|190573026|ref|YP_001970871.1| putative peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia K279a]
 gi|190010948|emb|CAQ44557.1| putative peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia K279a]
          Length = 651

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 107/659 (16%), Positives = 225/659 (34%), Gaps = 48/659 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-------------- 46
           ML+ +R  +  W+  + L +L +PFL   + ++     G+  V  V              
Sbjct: 1   MLQKLRDKTSGWIVTVILGLLMIPFLFV-IDNSYLGGVGAQNVAKVSAPPTWWRSAPSWW 59

Query: 47  ------GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                    ++    F   ++QE     Q+ G   +     S      +LD L+    + 
Sbjct: 60  PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESTENKLAVLDQLIDEQVVR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA--REGINEKEYIDHYTKM 158
              E  G+    G V   IA  P F   + KF+ + +   LA         ++ +   + 
Sbjct: 120 LVGEQAGVVIGDGAVREYIATIPAFLDSNGKFNENNYRLALAGGNPPRTPTQFQELVRES 179

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ +          +    ++  +   E R V+   L        A  ++A + QW++
Sbjct: 180 LQQSVIPSGLQNSGFVTQSETERLLKLLGETRDVELAALPEVP-ADTAPVTDAQIKQWYD 238

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++R  E   + Y+  +              L+  YE  K K+ +PE R    ++  
Sbjct: 239 SHGKDFRQAESVSLEYVEINGANLPAPTAADEATLRKRYEDEKAKFTTPEQRQASHILIT 298

Query: 279 NQKEADEAFQSLKKGKKFIQL--------AEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
                 +A +   + K             +E+ G       LG   +  +      D++F
Sbjct: 299 GDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKGQGGDLGWVERGAMVKP-FEDALF 357

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           + AK GD    +   FGY I  V+ ++     SF+EV+  +A +           E   R
Sbjct: 358 A-AKAGDVIGPVKTEFGYHIIKVAAVRGGQGKSFEEVRDTLAAEQLKADGERGFNELAGR 416

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
           L + +    S  +++   K V++ L  +    +       A           V  +D   
Sbjct: 417 LVDAI--NKSPSDLAAAAKEVNLPLQTLGPITRATASGIAADPGVLRAAFSDVLVQDGTA 474

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
           S    +       + +++    P +   L++    V    +  +   + S KA   VL  
Sbjct: 475 SDPIALGGATNHSVVIRVAAHTPEQAMPLDKAREQVIAAIRADR-QRQASDKAADAVLAK 533

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV--EMVKCF-PIEN 567
            K G   + +  +    L     + R          +    +FS PV  +    +  ++ 
Sbjct: 534 LKAGATLQSLAASEKLQLSPMPGLPRS---QPVPTPEINRAIFSAPVPADGKPSYGKVDV 590

Query: 568 GLSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
               ++F V     G       +++ +    L+Q+       + +  ++ ++ +   + 
Sbjct: 591 NGHALLFAVNKVNPGDVKEVTAEQQKQLKDQLSQIDGMAAAKAYVEAMRKKFVIQTTEA 649


>gi|194289547|ref|YP_002005454.1| peptidyl-prolyl cis-trans isomerase [Cupriavidus taiwanensis LMG
           19424]
 gi|193223382|emb|CAQ69387.1| PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Cupriavidus taiwanensis LMG
           19424]
          Length = 644

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 109/642 (16%), Positives = 232/642 (36%), Gaps = 35/642 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   R  +  +  V++F  F+ +G+      +  S     V  + +      N  
Sbjct: 1   MLDFVRNNRRLMLLLLL-VLVFPSFVFFGVESYSRFMDSSHDAAKVDGRAISVQEVDNVV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +     Q +G   +  +       K +L+ L+    +   +    L     ++  EI+
Sbjct: 60  RDQSERARQILGANYDPRQFEGPEARKAVLEQLIQQRVMANAVASEHLTVSDAKLLEEIS 119

Query: 121 RSPLF----HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             P       GKD K     ++  L  +G+  +++       L+   +            
Sbjct: 120 SLPAIAQLPRGKDGKIDDKAYLQLLQSQGMTPEQFDARMRFELAMQQLGASVAATAFVPK 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L+++      + R V  ++       A   P  A L  +++ ++ ++  PE  ++ Y++
Sbjct: 180 SLIERLMAARDQQRDVQALLFKPAGYTAKVQPDAAALKAYYDSHQQDFSVPEQAKVEYLV 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-- 294
                      ++ +EL++ YE N  ++   E R    ++    K+A  A +   K K  
Sbjct: 240 LSGEALAASQAVTPEELKSYYESNIARFRVDEQRRASHILISAPKDAPAAQRQAAKDKAT 299

Query: 295 -----------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                       F  +A    ++ G +     LG   +  +      D++++L K+G  +
Sbjct: 300 KLLEEVRKHPDTFADVARKNSQDPGSAEKGGDLGFMGRGALVKP-FEDAMYAL-KEGQIS 357

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+   FGY I  ++  KP+ T   + V+ ++  ++R   A +K  E        +    
Sbjct: 358 DVVETDFGYHIIKLTGTKPAETRPLEAVRTELEAELRKQFADKKFAEQADAFGNTVYEQA 417

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            S+   + + K+       V        G +  +    E+LL  +F  D   +K +T  V
Sbjct: 418 DSLKPAADKFKLTIQTADKVTRQPNPALGAQ--SPLNNEKLLKALFSDDAIKNKRNTEAV 475

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            +   + +  +I    PA  RK EEV   V++ +   + A  ++ K  +  L   K+  +
Sbjct: 476 QVAPNTLVAARIVAYRPATVRKFEEVEAQVREGYIAQQAA-ALARKDGEARLAALKQADS 534

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
               G     S    + +     E               P  +      +    Y + KV
Sbjct: 535 AEGFGPVQTVSRTKADGMTPQAVEAVMRADAA-----KLPALVGVDLGAQGYAVYRITKV 589

Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +        ++      L Q+  +  L +    LK++  V +
Sbjct: 590 SQPAQANPAQRQAAAQQLAQLAGQSDLQAFYESLKARAKVKM 631


>gi|254360504|ref|ZP_04976653.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213]
 gi|153091044|gb|EDN73049.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213]
          Length = 623

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 112/641 (17%), Positives = 244/641 (38%), Gaps = 38/641 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + +   V KI   ++ + F+I G+   L S   S  V  V  +++    F N+ 
Sbjct: 1   MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQDNS--VAKVNGEEISQQLFNNTL 58

Query: 61  KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            +E   ++ ++G            +   ++ +L+ L+    L Q+ +++ L     ++  
Sbjct: 59  NREQNRLNAELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQYAKELKLGISADQIKS 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI  S +F  +D KFS++++   L    ++   Y     + + ++ +    +        
Sbjct: 119 EIVNSQMFQ-QDGKFSNELYQQTLRHNNLSADGYAAIVQEGMLQSQLQEGIINSDFNVPA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                 +   + R V     +          S   L  ++E  K    APE   + Y+  
Sbjct: 178 QQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYEANKTKLLAPEKLAVEYVTL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
              + E K+EI+N+++Q  Y++NK  Y +     +  +   ++ EA    Q+LK G+ F 
Sbjct: 238 SPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQALKNGEDFA 297

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+ +        +   LG       P  +  D++ +L   G  +  +     Y I  V
Sbjct: 298 TLAKNKSSDTLSANNGGDLGWAKAGTFPK-AFEDAVANLT-AGQMSAAVKVDNAYHIIKV 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVS 412
              KP   +   +VK  IA  +R      +     + +  +     +S++E+++   +  
Sbjct: 356 LERKPEQVIELAQVKDKIAQTIRQELVLTEYFTVAREMANKAFENNSSLEEVAKAGNVEL 415

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-----SYMWVQ 467
               L          + V      E++L  +F  +   +K ++ AL  G       ++V+
Sbjct: 416 QKTDLFTR-------ENVPTALQNEKVLKVLFEGELRQNKQNSDALDVGNDANPQTLFVR 468

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + +    R +  +E    V+   K  K  + + +K  + V   ++        GK++   
Sbjct: 469 VSDYDAERPQTFDEAKAAVENFVKAEKAEKALLAKVEENVKALNE--------GKSVDVK 520

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIENGLSYVVFKVTNSKVGPV 584
                 +  M  E +     G   +F+      K             V+  + N   G  
Sbjct: 521 FNAPQTLVYMQAEVENPVLAGT--IFAMKKAQDKTTYQMARNQKGDVVIVALDNITEGNA 578

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           ++         Q     L +  +  L+++ S+ V+++ +Q+
Sbjct: 579 EQFKTLAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQ 619


>gi|296135612|ref|YP_003642854.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
 gi|295795734|gb|ADG30524.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
          Length = 640

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 112/645 (17%), Positives = 230/645 (35%), Gaps = 44/645 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IRK S+  +  +  V++F  F+++G+         +     VG Q +       + 
Sbjct: 1   MLESIRKHSK-LMQIVLFVLIFPSFVLFGIQGYSSFEGSADAAAKVGGQTISMQQLDAAN 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E+  +   +G  V+ ++  +     + LD ++    L        LE    +V   I 
Sbjct: 60  RDEIARLQSMLGSAVDIKQLDTPEQKLRTLDGMIRQTLLQLEARREHLEVTDAQVQQAIL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + P        D  F    + S +A +G+N  ++     + L    V+    G +  S  
Sbjct: 120 QIPQIAALRKPDGSFDVQAYRSLIAAQGMNTAQFEAQVREQLILQQVLSGLAGSVIDSQA 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L   A +   + R V   +       A    +   +  +++     ++ PE   I Y++ 
Sbjct: 180 LATAAAKAAAQQREVRLALFKPADYTAQVQVTPQEIETFYKNNTARFQKPESADIQYVVL 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293
              E    I+++ ++ +A Y+ N  K+ +P  R    ++     +A  A Q   K     
Sbjct: 240 SAAEVAAGIKVTAEQAKAFYDANLSKFSTPAERRASHILIAVPADATAAQQEQAKARAEA 299

Query: 294 ---------KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                     +F  LA    ++ G +     LG F+ + +     AD++F + K G+   
Sbjct: 300 IAKQVKANPAEFAALARKDSQDPGSAEKGGDLGYFTADSMVKP-FADAVFGMQKIGEIVG 358

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
            I   FGY I  ++ IKP     F  VK  I  Q++   A +++  D +     +     
Sbjct: 359 PIKTQFGYHIIELTGIKPGAQQPFDAVKASIEKQLQQEAAQKQMSADVEAFTNAVFEHPD 418

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH--TVA 457
           S   +  +  +       V    +      V+ +   +  L  +F +    +K +   + 
Sbjct: 419 SFQAVEDKLHLKVQSASNVTRTPQPAAPDAVSPL-SSKAFLDALFAESSLRNKHNLQAIQ 477

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           +    +   ++    PA+   L +V T  ++     K AE       Q            
Sbjct: 478 IAPNVWASARVLSFSPAQTLPLAQVQTQARQKLVDQKAAELARKAGEQ------------ 525

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
             +      +      IN +   +       +S+ F      +      +     Y V +
Sbjct: 526 -ALKSPATLTFGAPQMIN-LTQPSPGVSPLIVSKAFGLSASKLPATAGVDLGAQGYAVLQ 583

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +     G  P Q      +   Q + + ++++ I  LK ++ V +
Sbjct: 584 LDKVIEGEAPAQLISAAANAEQQALTQGVMNAYIEALKKRFGVEI 628


>gi|332141514|ref|YP_004427252.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551536|gb|AEA98254.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 565

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 104/574 (18%), Positives = 222/574 (38%), Gaps = 27/574 (4%)

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
               + I  + +SE+       K +LD L++   + Q   ++GL     ++   I + P 
Sbjct: 3   SQYGESIAQLFSSEQ-YLADFRKNVLDRLIAEKLIQQQATNMGLRVSDEQIRETIVQMPE 61

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F     +F ++ F + L + G    ++ D+    +++  +           +  ++QA  
Sbjct: 62  FQF-GGQFDNERFQAILRQNGFQVADFRDYLRTQMTQNQLAAALTNSSFALDGEVEQANA 120

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
              + R+  Y+++++       + ++A +  ++     ++   E  +++Y+   V + + 
Sbjct: 121 LQRQTRNAKYVLVSSDEFADSIEVTDADIEAFYNNNIASFDTEEQVKLAYVKLSVEDLKG 180

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSLKKGKKFI 297
           ++ +  D ++  Y+ N   Y + E R V  ++          + +A+     +  G  F 
Sbjct: 181 RVSVDEDSVRTYYDNNLGSYGTEEQRRVSHILIEAGDDTDAAKAKAESLKAEIDSGADFA 240

Query: 298 QLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            LAE           G    F    + D +  ++ FSL   GD + V+   FGY I  ++
Sbjct: 241 ALAEANSDDTFSAENGGDLDFITPEMMDPAFDEAAFSLENVGDVSDVVETEFGYHIIKLT 300

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIVSI 413
            +K +   SF EV  +I + +    A EK  E    L E       ++D+ +    +   
Sbjct: 301 EVKEAQVKSFDEVAGEIRDTLLYDAAMEKYFELQNTLAEIAFEVPDTLDDAANAVDLP-- 358

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
            +       ++    E+++ P    + F     ++ L+ D  + L D + +  ++ E  P
Sbjct: 359 -IQESVLFSRNTAPAELSS-PGLLDVAFSSELVEEGLNSD-IIELDDETVVVARVVEHQP 415

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
            R + L+EV   ++   K  K+ E   S A   V +  + G++  D          T   
Sbjct: 416 QRTQSLDEVREGIEASVKAEKSKEAAESWAFD-VAQKVRAGESVEDELAAKSVEWETAAN 474

Query: 534 INRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVF--KVTNSKVGPVQEKD 588
           + R            +  +FS  +E    V      NG   VV    V  +     +  +
Sbjct: 475 VQRA---GGTLARALVDTLFSLALEGDDQVDVATTVNGDVAVVMLEGVNPAPALESELGE 531

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                L Q+  + +    I  L++   VT+ + L
Sbjct: 532 SLKQRLAQVQGQRVYQQYIDALRANAEVTISEAL 565


>gi|319943847|ref|ZP_08018128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis
           ATCC 51599]
 gi|319743080|gb|EFV95486.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis
           ATCC 51599]
          Length = 649

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 118/644 (18%), Positives = 241/644 (37%), Gaps = 37/644 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + +R   +     + LV++   F+ +G+S          +V SV  + VP + F  ++
Sbjct: 1   MFDFVRTH-QRLAQGLLLVLIMPAFVFFGISGYDRMFGDGDSVASVDGEPVPRAYFEQTY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++  + Q +G   ++    +     ++L+NL++   L        +    G +   I 
Sbjct: 60  RQQVQQMQQMMGDNYDAAVFDNQATRMEVLENLITRQALLADARRARITVTPGEIQKAIL 119

Query: 121 RSPL-FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
                    + KF  + +   LA  G+   +Y     +ML+   V             ++
Sbjct: 120 DQHADLRDANGKFDIEGYKRLLAANGLTPAQYEAQMGQMLAVGAVERAVADSAMVPQTVV 179

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF-D 238
           D         R V  +++  R       P++  L  +++ +   +  PE   ISY+    
Sbjct: 180 DGVFASQENRRVVRTLLVTPRDYEKGLAPTDEQLKAYYDAHASAFDLPESVDISYVALRR 239

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------ 292
                K +E S  EL+A Y+K++ ++   E R    ++    + AD A +   K      
Sbjct: 240 TDMLPKDVEPSEKELEAYYQKHRNQFNEAEERQASHILLKVPEGADAAAKEKVKARAEAL 299

Query: 293 -------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
                    KF +LA++  +          LG F ++ +     AD+ F L K G FT V
Sbjct: 300 LAEAKAHPDKFAELAKKNSEDPGSAEQGGDLGFFERDTMVKP-FADAAFGLDKPG-FTDV 357

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-S 400
           +   +G+ +  V+ +K        EVK  +    R  +A+ +  +  + L   +     S
Sbjct: 358 VETEYGFHVIQVTGVKGGGEKPLAEVKPQLVKMWREEEAARRYNQAAEALSNMVYEQAES 417

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHT--VA 457
           +   + R K+   ++      G+          P     LL +++  D    K +T  + 
Sbjct: 418 LKPAAERFKL---NIEQAKGVGRKPAANAPEGSPLANARLLEQLYAPDALEEKRNTTAIE 474

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           +  G  +  ++    P R + L+EV   V++ W   + A        + + E  +E    
Sbjct: 475 VSPGVLVSARVDAHHPQRRQTLDEVKDTVRQRWIADEAARLAREAGEKRLAEL-REAAGA 533

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
           +D    L + L   N I+R  ++        +   F    + +  +   +     Y +  
Sbjct: 534 KDAKAALPSGLSEENTISR--SQPGRLQQPALKAAFGVSADQLPAWVGADLGKDGYQLIH 591

Query: 576 VTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           V  +       +   D + + L Q+M      + +  LKS   +
Sbjct: 592 VEKALPPDEAARQRLDTYRTQLRQLMANAERQAWVDTLKSTLKI 635


>gi|301154695|emb|CBW14158.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Haemophilus
           parainfluenzae T3T1]
          Length = 625

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 113/639 (17%), Positives = 240/639 (37%), Gaps = 37/639 (5%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML E +   + +++ K    +L V FLI G+S  L+     S    V  + +    F+N 
Sbjct: 1   MLIEKMHGVAHSFIGKAIFALLPVSFLIGGMSGYLYG-GNESFAAKVNGETISQQDFLNR 59

Query: 60  WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + QE    +Q+ G               L + ++  LV    + Q+ +++ L      + 
Sbjct: 60  YNQEFEARAQQEGESFLAKTDSVEFVTALRQNLIQRLVDQELIRQYAKELKLGVSDDMIK 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P     + KF +  +   L + G+    Y       L+   +            
Sbjct: 120 RAIVSDPNLQS-NGKFDNARYQQLLTQNGLTSDTYAAILRNALTLEQMQNGLADSEFVVP 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +  + + +F+ R      L      A    +   +  +++    +   PE  ++ YI 
Sbjct: 179 AQVKDSAQTFFQKRIARLATLPLADEVAKQKVTEEEIKAYYDANAKSLVQPEQAKVQYIR 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
              +E  K   ++  ++   Y++NK ++ S     +  +    +KEAD  +Q L+KG  F
Sbjct: 239 VSANELGKLQPVTETQIAQYYQENKAQFISQ---KLAHIQLATEKEADAVYQELQKGADF 295

Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            +LA+ +            LG      +P  +  D+   L   G ++  ++    Y I  
Sbjct: 296 AELAKAKSVDKLSGAQGGELGWVKDNELPK-NFEDAAL-LLNVGQYSTPVNVDGAYHIIL 353

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V + K     +  EVK+ IA+ +R   A  + +   K +    A   S D ++   +   
Sbjct: 354 VQDRKE---RTLDEVKEQIADSVRKNLAGSRFQAVEKAVRAKAAE--SSDSLAAVAEAAG 408

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470
           + +   D+ GK+     V A      +   +F  D  +  +    + + +  ++ V++ +
Sbjct: 409 VKVEETDYFGKN----NVPAALNFPNVTSAIFESDIANGGANSEPLTVGENEFVVVRVVD 464

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 + L+E  + +++  K  K  + ++ KA Q V   S +           G S   
Sbjct: 465 HKAEGLQSLDEAKSTIEQFLKREKADKVLTEKAEQAVKALSADPTKL-----PAGISFGE 519

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTNSKVGPVQE 586
                 MDN++    Y+G+  + + P +    + +       +  V  +         QE
Sbjct: 520 PQTFTLMDNKDPVL-YEGVFAI-AKPQDGKAAYQVARNSKGDVVVVALERVEEPTLSEQE 577

Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
             KF + L +    +L   ++  L+ +  + ++ + I +
Sbjct: 578 LAKFSTQLVRARQGELQGQLMQALREKAQIEINTSFINQ 616


>gi|261496293|ref|ZP_05992697.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261308055|gb|EEY09354.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 623

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 112/641 (17%), Positives = 244/641 (38%), Gaps = 38/641 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + +   V KI   ++ + F+I G+   L S   S  V  V  +++    F N+ 
Sbjct: 1   MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQDNS--VAKVNGEEISQQLFNNTL 58

Query: 61  KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            +E   ++ ++G            +   ++ +L+ L+    L Q+ +++ L     ++  
Sbjct: 59  NREQNRLNVELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQYAKELKLGISADQIKS 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI  S +F  +D KFS++++   L    ++   Y     + + ++ +    +        
Sbjct: 119 EIVNSQMFQ-QDGKFSNELYQQTLRHNNLSADGYAAIVQEGMLQSQLQEGIINSDFNVPA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                 +   + R V     +          S   L  ++E  K    APE   + Y+  
Sbjct: 178 QQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYEANKTKLLAPEKLAVEYVTL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
              + E K+EI+N+++Q  Y++NK  Y +     +  +   ++ EA    Q+LK G+ F 
Sbjct: 238 SPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQALKNGEDFA 297

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+ +        +   LG       P  +  D++ +L   G  +  +     Y I  V
Sbjct: 298 TLAKNKSSDTLSANNGGDLGWAKAGTFPK-AFEDAVANLT-AGQMSAAVKVDNAYHIIKV 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVS 412
              KP   +   +VK  IA  +R      +     + +  +     +S++E+++   +  
Sbjct: 356 LERKPEQVIELAQVKDKIAQTIRQELVLTEYSTVAREMANKAFENNSSLEEVAKAGNVEL 415

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-----SYMWVQ 467
               L          + V      E++L  +F  +   +K ++ AL  G       ++V+
Sbjct: 416 QKTDLFTR-------ENVPTALQNEKVLKVLFEGELRQNKQNSDALDVGNDANPQTLFVR 468

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + +    R +  +E    V+   K  K  + + +K  + V   ++        GK++   
Sbjct: 469 VSDYDAERPQTFDEAKAAVENFVKAEKAEKALLAKVEENVKALNE--------GKSVDVK 520

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIENGLSYVVFKVTNSKVGPV 584
                 +  M  E +     G   +F+      K             V+  + N   G  
Sbjct: 521 FNAPQTLVYMQAEVENPVLAGT--IFAMKKAQDKTTYQMARNQKGDVVIVALDNITEGNA 578

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           ++         Q     L +  +  L+++ S+ V+++ +Q+
Sbjct: 579 EQFKTLAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQ 619


>gi|302344093|ref|YP_003808622.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
           baarsii DSM 2075]
 gi|301640706|gb|ADK86028.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
           baarsii DSM 2075]
          Length = 649

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 114/638 (17%), Positives = 244/638 (38%), Gaps = 40/638 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           MLE++R+ +  W+ KI L ++ + F + +GLS    S  G    + V  Q +   +    
Sbjct: 1   MLELMRRQAGNWIIKIILGLIALAFALSFGLSPNFGSNPG--VAMKVNDQPIMEDAVSEL 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           + +      Q+ G   + + A  + L ++ L +L+    L Q  + +GL   +  +   I
Sbjct: 59  YGRMTEQARQQFGDNFD-KLAPMLNLRQQALYSLMDRLLLAQAAQRMGLGVSNRELASSI 117

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
                F   + KF   ++  RLA   + E+ + +     L +  +  M  G  + + L +
Sbjct: 118 QDMAAFQ-VEGKFDMRLYQQRLAANRLTEERFENSVRADLLQGKIAAMVGGSGQVTPLQV 176

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           DQA +         Y+++    +          + + +E +K  Y  P   R+ Y+   V
Sbjct: 177 DQALQEALSRADAVYLLVKPEDLLDSVKVGEDEIAEHYESHKGLYMNPATLRVDYVALPV 236

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------AF 287
                K +++ DE+   YE +  +Y  PE      ++     EADE              
Sbjct: 237 SAFRDKADVAEDEIIDAYEMDWRQYSRPEEVRARHILIELAPEADEAQKAKAKAQALALL 296

Query: 288 QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           +  + G+ F ++A+E  K  S      LG F +  +      + +F +   G    V+  
Sbjct: 297 EKARAGEDFAKMAKEYSKGPSADKGGDLGYFQRGQMVGP-FDELVFKMT-PGQI-EVVET 353

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  + + K +  V  +E + +I  ++   +A +   +  + L + LA G  ++  
Sbjct: 354 EFGWHVVKLEDKKKARIVPLEEARGEIKARLAEQQAKDLAMQAAEGLFDALAAGQPLEAA 413

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           ++  K+V    P V         + V  +   + L     G +            DG  +
Sbjct: 414 AKERKLVVEQPPAV------TADQPVPGLTGLKDLFAAAQGLEAGQPLRPM--TFDGGAV 465

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
              I++    + + L++V   V+   ++ K  +    +A +++ + +        + K  
Sbjct: 466 VAVIRQRTAPQPKPLDKVREQVEMAVRSEKANQLAQVQAKEIIAKLNAAKDPAAALSKLG 525

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGLSYVVFKVTNSKVG 582
           G     T  +   +      G + + Q        + V   P+     + V  VT  +  
Sbjct: 526 G---KPTGPLTSSEPIEGLPGSEQLQQAIHALAQDKTVLAQPVPVAGGFAVAVVTKRQPP 582

Query: 583 PVQEKDKFISYLTQMMNKDLLDS----VIAYLKSQYSV 616
                D+    +TQ + + + +      +A L++   +
Sbjct: 583 EPGAMDQMREGMTQQLRRTMQNQTYQRFLADLRNNADI 620



 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 49/158 (31%), Gaps = 1/158 (0%)

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
            +  V++++   AR   LEE   ++K      + A++++ +A + + +    G+      
Sbjct: 356 GWHVVKLEDKKKARIVPLEEARGEIKARL-AEQQAKDLAMQAAEGLFDALAAGQPLEAAA 414

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
           K     +     +          G   +     G        P+      VV  +     
Sbjct: 415 KERKLVVEQPPAVTADQPVPGLTGLKDLFAAAQGLEAGQPLRPMTFDGGAVVAVIRQRTA 474

Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
              +  DK    +   +  +  + +      +    ++
Sbjct: 475 PQPKPLDKVREQVEMAVRSEKANQLAQVQAKEIIAKLN 512


>gi|120610416|ref|YP_970094.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
 gi|120588880|gb|ABM32320.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
          Length = 642

 Score =  349 bits (895), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 103/616 (16%), Positives = 225/616 (36%), Gaps = 40/616 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IRK S+  V  +  +++   F++ G+    F  S S+ V  V    +    + N+ 
Sbjct: 1   MFESIRKHSK-VVMIVLFLLIIPSFVLVGIDRNYF-TSKSAVVARVDGHDITQDDWDNAH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E   I  +    V++    S       L+ LV    +      + L     ++   + 
Sbjct: 59  RMETDRIRAQSPS-VDARLLDSPRARYATLERLVRDRVMQAAAVKMHLVTSDAQLARTLQ 117

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     + + + +  +G+  + +  +  + LS + V+G  +G       
Sbjct: 118 GIPAIAALKRPDGSLDAEAYRALVGSQGLTPEGFESNVRRELSLSQVMGGVLGSAFAGQE 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               A    ++ R +     + +   A   P++  L  +++ ++  +R PE+  + Y++ 
Sbjct: 178 PARLALDALYQRREIQVARFDAKDFAAKVAPTDDELQSYYKAHEAQFRQPEHADVQYVVL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------- 290
           D+      I +S D+L++ Y++N E+    E R    ++    K+A  A +         
Sbjct: 238 DLDAVRASITLSEDDLRSYYKENLERLAGKEERRASHILINAPKDAPAADREKARARAQA 297

Query: 291 ------KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                 K    F ++A    ++ G + S   LG F +  +      D+ FS+ KKGD + 
Sbjct: 298 LLEQVRKAPGTFAEVARKNSQDTGSAPSGGDLGFFKRGDMVKP-FEDAAFSM-KKGDISD 355

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           ++   +GY I  ++++K     +F+EV+  +  + +  +A  K  E  +     +     
Sbjct: 356 LVESEYGYHIIQLNDVKTPRQPTFEEVRAKLETEAKQQQAQRKFAELAEVFSNTVYEQAD 415

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+  ++ + K+       V           +A      + L  +F  D   +K +T  + 
Sbjct: 416 SLQPVADKLKLKVQTASGVARTPLPGAQGPLA----NGRFLEALFAADSVQNKRNTEAIE 471

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
               + +  ++    PA     ++V   V++ +   ++AE    +    +  +     + 
Sbjct: 472 TAPSTLVAGRVAAYTPASTPAFDQVKARVRELFVADRSAELARKEGEARLAAWKAAPASA 531

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
             +G  +  S        R   +            F+G     +         Y V KVT
Sbjct: 532 TGLGNLVTISRDKPEGQPRPVVDAALQVNADTLPAFAGTPLGAQ--------GYAVVKVT 583

Query: 578 NSKVGPVQEKDKFISY 593
                   +       
Sbjct: 584 RIVPRDPSDPAVARQQ 599


>gi|118594828|ref|ZP_01552175.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
           bacterium HTCC2181]
 gi|118440606|gb|EAV47233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
           bacterium HTCC2181]
          Length = 627

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 106/647 (16%), Positives = 250/647 (38%), Gaps = 48/647 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR ++ + +AK+ L ++ +PF ++G+   L SV  +  +  V    +    + N+ 
Sbjct: 1   MLDKIRNSTDSKLAKVILAIIIIPFALFGIDSYLSSVGSNVYIAKVNGVDISAQQYQNT- 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E  +  Q      +     S    K +LDNL+S   ++Q I+  G    + ++   I 
Sbjct: 60  --EAMIREQMTDPNTDPALFDSPEFKKAVLDNLISTELMNQSIDKNGFVISNEQLSSYIV 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  ++ KFS + +   +    +  K+  D     ++           +   N +  
Sbjct: 118 GMPDFQ-ENGKFSQERYDQIVQYNNLTPKKLEDRIRTQMATQQAKDSINRLIYVPNEITQ 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                 ++ R +    +          P++  + Q++++   N+  P+  +I ++++ V 
Sbjct: 177 PLVNLAYQKRDISLHEIRLDDYKKKIKPTDDEVKQFYDENTSNFIMPDRVKIEFLIYSVA 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADEAFQ 288
                I +SN+E +  ++ NK K+ + + R  + ++F  Q              A     
Sbjct: 237 GIVPTISVSNEEARQFFDANKGKFEANQQRRAKHILFAYQPGIDFEEKARIRDLAQTTLN 296

Query: 289 SLKKGKK-FI----QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            +KK  K F     +L+++   +     LG FS+  +     AD++F L   G  + ++ 
Sbjct: 297 EIKKSPKIFENKVKELSQDTESAKQGGDLGFFSRGDMVKP-FADAVFGLKVDG-LSGLVE 354

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             FG  I  +++IK     SF ++K  I  ++   KA ++   + +     +   +  D+
Sbjct: 355 TEFGLHIIKLTDIKGEQV-SFDKIKTQIKGELLYGKALDQYATNAENFNNTVYENS--DD 411

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDG 461
           +S   +   +++    +   D    +       +     +F  +   SK +T  + +   
Sbjct: 412 LSVVAQKFGLEVQQSQWLSLD----DAKRFFNNDAFANEIFSSESIESKTNTLAIEVSPN 467

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
           + +  ++ +  P+  + L ++   V       K+ E +    N LV +            
Sbjct: 468 NLVSARVIDFSPSALQPLNDIKEQVVDLIIERKSQELIIEDGNMLVEDLK---------S 518

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNS 579
           K           I+R+D +        + ++F      +  +    +    + V K+ N 
Sbjct: 519 KKKKVEWFDELVIDRIDKQG--LSDQLVKKIFQIDTSELPAYSGFYDLKGEFFVIKINNV 576

Query: 580 KVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
               V ++   D +     + +   +  + I  L++   + ++  ++
Sbjct: 577 VDEDVTDELSVDLYREEYEKALKGAIQAAYIDDLRADAKIKINPKVL 623


>gi|294677876|ref|YP_003578491.1| peptidyl-prolyl cis-trans isomerase D [Rhodobacter capsulatus SB
           1003]
 gi|294476696|gb|ADE86084.1| peptidyl-prolyl cis-trans isomerase D [Rhodobacter capsulatus SB
           1003]
          Length = 609

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 121/624 (19%), Positives = 248/624 (39%), Gaps = 29/624 (4%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           +R + ++    + L ++ +    + + +     +   ++ +VG  ++    + ++ +QE+
Sbjct: 2   LRSSGKSVTVWVLLAMIVLGLGGYQVGNF---SNRGQSIGAVGESEITARDYADALRQEI 58

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             ++ +IG   +    R++GLD+ +   L + A L +    + L      V  +I  +  
Sbjct: 59  NAVAAQIGHPPSMSEVRAMGLDQVVQAQLFNTAALSEQARRLELSVGDAEVSRQIRSARP 118

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F G    F  + +   L REG+ E E+       ++R+ + G   GG+     LLD    
Sbjct: 119 FQGATGSFDRETYREVLRREGLTETEFETRLRADIARSILQGAVAGGVPAPAALLDGYVG 178

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
           +  E R V +  +    + ++  P  A L  +++ +   +  PE + ISY+       + 
Sbjct: 179 YLGETRDVAFAEIPATGI-SLPAPDAAALKAYYDAHLAEFTRPETREISYVWLTPDMLKD 237

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQ 303
           +I I   +L+A Y++ K +Y  PE R + +LVFP Q EA+     +  G      LAE +
Sbjct: 238 EIAIDEAQLRATYDERKAEYVQPERRKLAKLVFPTQAEAEAGMAKIAAGTASLADLAEAR 297

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           G S +DI LG  S++ I   +  +++F+    G          G  +     + PS T +
Sbjct: 298 GLSAADIDLGDVSQDEIGGAA-GEAVFARTTPGVI-GPYETDLGPALFDFQAVTPSETTT 355

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
           F+E + DIA ++ + KA   + +    LE+ LA G +++++ +  K+    + +      
Sbjct: 356 FEEARGDIAAELAMEKARRMIADMTTDLEDRLASGATLEDMVKETKMQPGKISMAADT-- 413

Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
                 +AA     +   +V  +D P        L DG    +++     A     +++ 
Sbjct: 414 ---RDGIAAYDAFREAAAKVTTEDFP----ELAVLEDGGVFALRLDGVTAAAPIPFDQLR 466

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
             V+  W+T +  +   +KA                     G +  T   + R       
Sbjct: 467 DKVEASWRTAEMVKAKQAKAEAAGAAGQT--------LAAQGLAEKTAPDLQRGGFVEGA 518

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMN 599
                    F+            + +  V  +          E    +  F + L QM+ 
Sbjct: 519 -PQGLAQTAFATAAGKSATLTEGDKVFVVTVRAVKPADPADPELVQLRKTFDTRLIQMLG 577

Query: 600 KDLLDSVIAYLKSQYSVTVHDNLI 623
            DL        +++  +T+   +I
Sbjct: 578 ADLAAFYARAAQAEAGITLDSAMI 601


>gi|295689570|ref|YP_003593263.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
           ATCC 21756]
 gi|295431473|gb|ADG10645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
           ATCC 21756]
          Length = 653

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 125/642 (19%), Positives = 261/642 (40%), Gaps = 22/642 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML   R  +++  A +   +L V F I+G+SD      GS  V+  G +++    F   +
Sbjct: 1   MLAGFRSFAKSPFAVLLFGLLIVSFAIFGISDVFKGPRGSG-VIDAGSREMSAQDFKLRF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                 I ++ G  +  ++A   G+DK+I+  L    ++   I  +G+      +   + 
Sbjct: 60  DNYRKEIERRNGEPMTPDQAVERGVDKQIVQELALQESIAAAIAKMGVVPSDKLIAKTVH 119

Query: 121 RSPL--------FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
                       F     KF   ++ + LA+  +  + Y       +++         G+
Sbjct: 120 EQMSSLPPGQRPFDPITGKFDSKLYAALLAQNNLTPQAYEASLRDEIAQAHFFSAVADGL 179

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
           +   +       +  E R V    +N   V   A P++A L  + ++  D    PE + +
Sbjct: 180 KAPRIYAALQAAYGLEARDVAAFAVNPASVEKPAPPTDAQLMAFMKENADRLTRPETRVL 239

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           S +       E  + ++  E+Q  ++  K+    PE R++ Q+V P+ K A    Q L +
Sbjct: 240 SIMRVSAKALEPTVTLNPAEVQKAFDFRKDSLAKPETRSLIQIVAPDAKTAATISQRLAR 299

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           G+    +A+  GKS   ++L    K  +PD  +AD+ FSLA  G  +  I+G  G  +  
Sbjct: 300 GEDPATVAKAYGKSP--VALIDKPKSALPDRKVADAAFSLA-VGQVSGPINGELGVSVVK 356

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V+ + P    +   V+ +I  ++R   A  K  +  +  ++    G  +   + +   + 
Sbjct: 357 VTKVTPGVVATLDSVRPEIEAEVRAQTAQSKAYDQTQAYQDAHDAGADLVAAASKAGAMV 416

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
           +    +   G D  G+  A +    +++   FG       D  + L  G Y  V++++ +
Sbjct: 417 VTTAPITAQGADQMGQPAAGL--TPEMIKTAFGLPQGGESD-LIELGKGEYYAVKVEKVV 473

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           PA    L E+   +   W   +  + + +KA+ L     K+G++   +  +  +++    
Sbjct: 474 PAAMPPLAEIKPQLTAVWMGQEMGKRLKAKADALAAR-VKKGESLEAVAASAQSNVQRVP 532

Query: 533 QINRMDNENKF-FGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
            ++R + +     G   +   F   P E+      + G +YVV K+      P  +  ++
Sbjct: 533 GLSRQNAQQHMGLGPAFLGAAFDAKPNEVFTARAGQQGEAYVVAKLEAVHAAPTNDVARY 592

Query: 591 I----SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
                +     + +DL ++  A  K+Q     +  L ++ + 
Sbjct: 593 AVLAQAQAANGLMRDLGEASRAAAKAQLKTKTNLTLARQAIG 634


>gi|32033981|ref|ZP_00134237.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208477|ref|YP_001053702.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae L20]
 gi|126097269|gb|ABN74097.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 625

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 109/644 (16%), Positives = 242/644 (37%), Gaps = 42/644 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + ++  V KI   ++ + F+I G+   L  V G +  V V   ++   +F  + 
Sbjct: 1   MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58

Query: 61  KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G          E A+     + +L+ LV    L Q+ +++ L     ++
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  S +F  +D KFS+D++   L   G++   Y     + +  + +    +G     
Sbjct: 117 KSEIVNSSIFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNV 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
                   +   + R V     +          S   L ++++ +K     PE   + Y+
Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLTVEYV 235

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                +    +++++++++  YEKNK  Y +        +   N+ +A    + +K G  
Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295

Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F +LA+ +            LG       P  +   +  SL + G  + V++    Y I 
Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPK-AFEAAAASL-QDGQVSAVVNVDGAYHII 353

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKI 410
            V   K    +  ++VK  I   +R      +     + +         S++ +++   +
Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465
                            + V A    E++L  +F  +   S  ++ A+  G       M+
Sbjct: 414 KVQKSAQFTQ-------QNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMF 466

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V++ +    R + LEE   +V +  K  K  + + +KA + V   ++        GK+  
Sbjct: 467 VRVSDYQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNE--------GKDEK 518

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVG 582
            S      +     E++         VFS P      V           ++  +     G
Sbjct: 519 VSFGNAQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDG 576

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            ++E         Q     L + ++  L+++ S+ V+ + + + 
Sbjct: 577 SLEEFKPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620


>gi|126726381|ref|ZP_01742222.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales
           bacterium HTCC2150]
 gi|126704244|gb|EBA03336.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales
           bacterium HTCC2150]
          Length = 653

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 108/598 (18%), Positives = 252/598 (42%), Gaps = 27/598 (4%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
              + +V SVG ++V  + +  +   EL  +SQ+ G  +  E+AR+ G+   +L  L+S 
Sbjct: 67  GGSTQSVASVGDREVGVNEYARAVNNELSRLSQQFGQQITLEQARAFGVVDNVLQQLLSQ 126

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
           A +D  +  +G       V  +I   P F     +F    +  RL   G++ KE+ ++  
Sbjct: 127 AAVDNEVVRLGFSIGDEEVRKQILEIPAFQSLGGQFDKVNYEERLRSSGLSTKEFENNLR 186

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
              +RT + G   GG+  ++   D    F  + R+ ++ +L+   +      ++A L  +
Sbjct: 187 IQTARTFLQGAVGGGVIGNSAYGDAVIDFLTQERNFEWALLDASALSEEVTATDADLQAY 246

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +++    +  PE ++I+Y +         IE+   E+QA Y++   ++  PE R  E+L 
Sbjct: 247 YDENPATFTLPESRQITYAVLLPETVAATIEVPASEIQAVYDERAAEFQKPERRLTERLA 306

Query: 277 FPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
           F ++  A+ A   L  G+ +F  L  E+  +L D+ +G  +++ + + + A+++F+    
Sbjct: 307 FADEAAANAAKARLDSGEVRFADLLAERDLTLEDVDMGEVTRDDLYEET-ANALFADGFL 365

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G     +  S G  I  V+    +     ++V++DI +++  ++A  ++ +    +++ L
Sbjct: 366 G-IAGPLPSSVGPAIFRVNGALAAIDTPLEDVQEDIRSELAQSRARREILDYITEVDDLL 424

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           A G +++E++   ++      +   + +D     +AA              D P      
Sbjct: 425 AGGATLEEVAAETQMTLETTDITTESAED-----MAAYNEFRAAALSAQDGDFP----EI 475

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
             L DG    +++    P   + +E V   + + W   +T   +++ A++          
Sbjct: 476 TELSDGGIFALRLDGITPPTLQDIEAVTDQLNEAWTYAETQIRLNTLADEKAA------- 528

Query: 516 NFRDIGKNLGASLLTTNQIN-RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
           +           L +  ++N R D          + + F+  +  +      N     + 
Sbjct: 529 SLEGDVLFADQGLRSIAEVNLRRDGTVAGTPPTTVFEAFNLELGQLTTIDGVN--EVYIV 586

Query: 575 KVTNSKVGPVQEKDKFISYL-----TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           ++         E+D+ +S +        ++ D+  +    +++   V+++   +   L
Sbjct: 587 RLNAINTDTQTEEDEGLSAIVANEVNGSLSNDIYAAFTNAVRADAGVSINTTAVNAVL 644


>gi|307261487|ref|ZP_07543156.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868770|gb|EFN00578.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 625

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 109/644 (16%), Positives = 242/644 (37%), Gaps = 42/644 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + ++  V KI   ++ + F+I G+   L  V G +  V V   ++   +F  + 
Sbjct: 1   MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58

Query: 61  KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G          E A+     + +L+ LV    L Q+ +++ L     ++
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  S +F  +D KFS+D++   L   G++   Y     + +  + +    +G     
Sbjct: 117 KSEIVNSSVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNV 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
                   +   + R V     +          S   L ++++ +K     PE   + Y+
Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLTVEYV 235

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                +    +++++++++  YEKNK  Y +        +   N+ +A    + +K G  
Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295

Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F +LA+ +            LG       P  +   +  SL + G  + V++    Y I 
Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPK-AFEAAAASL-QDGQVSAVVNVDGAYHII 353

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKI 410
            V   K    +  ++VK  I   +R      +     + +         S++ +++   +
Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465
                            + V A    E++L  +F  +   S  ++ A+  G       M+
Sbjct: 414 KVQKSAQFTQ-------QNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMF 466

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V++ +    R + LEE   +V +  K  K  + + +KA + V   ++        GK+  
Sbjct: 467 VRVSDYQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNE--------GKDEK 518

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVG 582
            S      +     E++         VFS P      V           ++  +     G
Sbjct: 519 VSFGNAQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDG 576

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            ++E         Q     L + ++  L+++ S+ V+ + + + 
Sbjct: 577 SLEEFKPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620


>gi|197105219|ref|YP_002130596.1| rotamase family protein [Phenylobacterium zucineum HLK1]
 gi|196478639|gb|ACG78167.1| rotamase family protein [Phenylobacterium zucineum HLK1]
          Length = 638

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 129/636 (20%), Positives = 273/636 (42%), Gaps = 16/636 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IR+ +++WVA + + +L V F ++G++D +FS +    V+  G + V  + F   +
Sbjct: 1   MLAAIRQFAKSWVAAVLIGLLIVSFAVFGIND-VFSGATGDQVIKAGSRVVTSAEFRREY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +     + Q+ G  +  E A + G+D+++L+ L +     + +  IG+      +  EI+
Sbjct: 60  EDYRKRLEQQAGQPITPEMAEANGIDRQVLNGLATREAFAEMLHKIGIRPSDKLLVAEIS 119

Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
           + P F      +F  + F  RLA   +  + +       ++          G+R      
Sbjct: 120 KIPAFFDPISGRFDRNTFQQRLAENDMTPEGFDRALRDQMAAQHWGAGVGEGLRAPRAYG 179

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                F  E+R V +  +   +VPA+A P++  LT + ++  +    PE + ++ + F  
Sbjct: 180 ALGAIFGLESRDVAWFNVTAANVPAVAAPTDEQLTAFMKENAEQLTRPEMRVLTVVRFTP 239

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               +   +   EL+  YE  K+ +  PE RT+ Q+   +   A +    L +G     +
Sbjct: 240 QAVPQNTPVDEAELKKLYEFRKDTFSRPETRTLVQIPAKDAAAAQQIQAGLARGDDPAAV 299

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           A+  G  +  I+     K  + D  +AD  F L + G       G  G  +  V ++ P 
Sbjct: 300 AKAAGVDV--ITYEDKPKTALADRRVADVAFGL-QPGQVAR-AQGELGLAVVKVISVTPG 355

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            TV+ +E +  +  ++R   A++KV E  +  +E    G  +   +++  + ++ +  V 
Sbjct: 356 QTVTLEEARPVLEAELRKNAAAQKVYEQAEAYDEAHRGGADLAAAAQQVGVPAMTVGPVT 415

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
             G D +G+ V  +     +L + F        D T A  +G    V+++  +P     L
Sbjct: 416 RQGVDEQGRPVPGL--TPAILEQAFSLPAGGEGDLTDA-GEGESFAVKVERVVPPAMPPL 472

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            EV T++ + W   +TA  + ++AN+L  E  ++G++   +  +    +     ++R   
Sbjct: 473 AEVRTELARVWSARETARRMEARANEL-AERVRKGESLEAVAASASLKVSRAEGLSRQTA 531

Query: 540 -ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY----L 594
            ++     + +++ F    + V         ++ V KV+N ++ P              +
Sbjct: 532 GQDPALSGELLNRAFGARPDDV-IVGRAREFAFSVAKVSNIRMQPGPTAAMLTEQQRGEM 590

Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           T  + +++ D+     + +  V V  N  +  +  E
Sbjct: 591 TNTLFREIADAAQRAARDKLKVRVDVNRARAAVGFE 626


>gi|222110395|ref|YP_002552659.1| ppic-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
           TPSY]
 gi|221729839|gb|ACM32659.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
           TPSY]
          Length = 640

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 112/641 (17%), Positives = 234/641 (36%), Gaps = 37/641 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IRK S+  V  +  +++   F++ G+    FS  GS  V  V  + +  + + N+ 
Sbjct: 1   MFESIRKHSK-IVMFLLFLLIIPSFILVGIDSNYFS-GGSPVVARVDGKDITQADWDNAH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E   I  +    ++++   S       L+ LV    L    +D+ +     R+  E+ 
Sbjct: 59  RMESDRIRAQSPG-IDAKLLDSPQARYATLERLVRDRVLQVAAQDMHMLTSDARLARELQ 117

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     + + +    +G+  +       + LS   V+G  +G       
Sbjct: 118 SIPQIAALKRADGTLDAEAYRALAGAQGLTPEGLEARIRQDLSVNQVMGGVMGSAFSGPA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               A    F+ R +     N     +    ++A L  ++  +   ++  E   + Y++ 
Sbjct: 178 EARLALDALFQRREIQIARFNASAFVSKVVVTDADLEAYYTAHPAKFQQAEQASVEYVVL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
           D+   +  I +S D+L+  Y++N  +    E R    ++               + +A+E
Sbjct: 238 DLDAVKAGITLSEDDLRTYYKENLNRLAGKEERRASHILINASKDAPADARTQAKAKAEE 297

Query: 286 AFQSLKKG-KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               ++K    F ++A+    + G + S   LG F +  +      D++FS+ KKG+ + 
Sbjct: 298 LLAQVRKAPGSFAEIAKKESQDPGSAPSGGDLGFFGRGAMVKP-FEDAVFSM-KKGEISD 355

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FG+ I  +S+IK     SF+E++  +  +++  +A  K  E  +     +     
Sbjct: 356 VVETDFGFHIILLSDIKTPRQPSFEELRPSLEAELKQQQAQRKFAEVAEAFANGVYEQAD 415

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           S+  ++ + K+       V           +A      + L  +F  D   +K +T A+ 
Sbjct: 416 SLQPVADKLKLKIQTADGVTRTPAAGGAGPLA----NARFLEALFQSDSLQNKRNTEAIE 471

Query: 460 DGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
            G+ +    ++    PA    L++    V+  +   K+AE    +    +  +    K  
Sbjct: 472 IGTSVLAAGRVTAYQPAMTLPLDKARDQVRAIYIAEKSAELARQEGQAKLTAW----KAA 527

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
            D    L A+L T ++    D           + V   P         +      + +V 
Sbjct: 528 PDAASGLTAAL-TVSRDRLQDQPRSVVDAALRANVDQLPAWTGVDLGAQGYAVVKINRVV 586

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                             Q        +    LK ++ V +
Sbjct: 587 PRDGVDDARARMEREQYLQSWASAEALAYYDLLKQRFKVQI 627


>gi|121594957|ref|YP_986853.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
 gi|120607037|gb|ABM42777.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
          Length = 640

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 112/641 (17%), Positives = 234/641 (36%), Gaps = 37/641 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IRK S+  V  +  +++   F++ G+    FS  GS  V  V  + +  + + N+ 
Sbjct: 1   MFESIRKHSK-IVMFLLFLLIIPSFILVGIDSNYFS-GGSPVVARVDGKDITQADWDNAH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E   I  +    ++++   S       L+ LV    L    +D+ +     R+  E+ 
Sbjct: 59  RMESDRIRAQSPG-IDAKLLDSPQARYATLERLVRDRVLQVAAQDMHMLTSDARLARELQ 117

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     + + +    +G+  +       + LS   V+G  +G       
Sbjct: 118 SIPQIAALKRADGTLDAEAYRALAGAQGLTPEGLEARIRQDLSVNQVMGGVMGSAFSGPA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               A    F+ R +     N     +    ++A L  ++  +   ++  E   + Y++ 
Sbjct: 178 EARLALDALFQRREIQIARFNASAFVSKVVVTDADLEAYYTAHPAKFQQAEQASVEYVVL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285
           D+   +  I +S D+L+  Y++N  +    E R    ++               + +A+E
Sbjct: 238 DLDAVKAGITLSEDDLRTYYKENLNRLAGKEERRASHILINASKDAPADARTQAKAKAEE 297

Query: 286 AFQSLKKG-KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               ++K    F ++A+    + G + S   LG F +  +      D++FS+ KKG+ + 
Sbjct: 298 LLAQVRKAPGSFAEIAKKESQDPGSAPSGGDLGFFGRGAMVKP-FEDAVFSM-KKGEISD 355

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FG+ I  +S+IK     SF+E++  +  +++  +A  K  E  +     +     
Sbjct: 356 VVETDFGFHIILLSDIKTPRQPSFEELRPSLEAELKQQQAQRKFAEVAEAFANGVYEQAD 415

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           S+  ++ + K+       V           +A      + L  +F  D   +K +T A+ 
Sbjct: 416 SLQPVADKLKLKIQTAEGVTRTPAAGGAGPLA----NARFLEALFQSDSLQNKRNTEAIE 471

Query: 460 DGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
            G+ +    ++    PA    L++    V+  +   K+AE    +    +  +    K  
Sbjct: 472 IGTSVLAAGRVTAYQPAMTLPLDKARDQVRAIYIAEKSAELARQEGQAKLTAW----KAA 527

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
            D    L A+L T ++    D           + V   P         +      + +V 
Sbjct: 528 PDAASGLTAAL-TVSRDRLQDQPRSVVDAALRANVDQLPAWTGVDLGAQGYAVVKINRVV 586

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                             Q        +    LK ++ V +
Sbjct: 587 PRDGVDDARARMEREQYLQSWASAEALAYYDLLKQRFKVQI 627


>gi|319787632|ref|YP_004147107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317466144|gb|ADV27876.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 654

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 113/672 (16%), Positives = 238/672 (35%), Gaps = 67/672 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-------------- 46
           ML+ +R  S  W A I + +L +PFL   +  +     G++ V  V              
Sbjct: 1   MLQKLRDRSSGWAATIIIALLMIPFLFV-VDQSYLGGMGANNVAQVKAPPSWWKGAPGFW 59

Query: 47  ------GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                   ++V    F    +Q   +  Q+ G   +      +   ++ILD LV    + 
Sbjct: 60  PVSLLWEHEEVSVEDFRQRLEQARMLARQQQGEAFDPREFEGIENKRRILDELVDEKVML 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE--GINEKEYIDHYTKM 158
                 G+      V   IA  P F   D KF  + +   L+ +      +++ D     
Sbjct: 120 LASARDGVVVSDAAVREYIASIPAFQ-VDGKFDQNAYQMALSSQFPPRTPRQFEDLVRTT 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ V          ++  LD+  R   E R V+  ++           ++A    W+E
Sbjct: 179 LRQSLVPVGVGSSAFVTDAELDRLLRLSGETRDVELALMPEIAEDTTP-VTDADAKAWYE 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +  ++ +PE   I Y+     +  +        L+  YE  K+++  PE R    ++  
Sbjct: 238 AHTADFMSPEKVAIEYVEVTALQVPEPAAADEATLRERYEAEKQRFGDPERRLASHILVR 297

Query: 279 NQKEADE----------AFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVS 324
             +  D           A Q+   G  F  LA E  +          LG   +  + +  
Sbjct: 298 VPEGGDAAAAEAKAKQLAGQAAAPGADFAALAREHSEDPGSRDTGGDLGWVEQGMMVEP- 356

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
              ++F++ + G+ +  +   FG+ +  +  ++P     F+EV++++A +          
Sbjct: 357 FEQALFAM-QAGETSGPVKTEFGWHVLQLREVQPGALKPFEEVREELAREQAQADRERAY 415

Query: 385 KEDYKRLEEFLALG-TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
            E   RL +      +S++  +   K+    L             ++  I    ++    
Sbjct: 416 SELLGRLTDLAYENPSSLEPAANELKLELRKLGPFSR-------DDMVGIAAAPEVKRAA 468

Query: 444 FGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
           F ++  +  +    + +     + +++ E  PA  R L +V  +V+   +  +T++   +
Sbjct: 469 FSEELVEDGTASDPIEIGPQHNVVIRVVEHQPAAARALADVRAEVEAAVRADRTSKAAIA 528

Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV---- 557
            A   +    K G+    +  + G        +  +         +    +FS PV    
Sbjct: 529 AAEAALERLRK-GEAMAAVVGSEG----EVMPLPGLPRGAPAPTPEANRAIFSAPVPEEG 583

Query: 558 -EMVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
                 F + +G    VF V     G     P +++        Q+    +    I  ++
Sbjct: 584 KATFGRFALPDG-RQAVFAVNAVHPGKPEELPQEQRAMLRQQFAQVDGATMAQDYIRRVR 642

Query: 612 SQYSVTVHDNLI 623
           SQ+ V V ++ +
Sbjct: 643 SQFKVQVDESQL 654


>gi|296107448|ref|YP_003619148.1| peptidyl-prolyl cis-trans isomerase D [Legionella pneumophila
           2300/99 Alcoy]
 gi|295649349|gb|ADG25196.1| peptidyl-prolyl cis-trans isomerase D [Legionella pneumophila
           2300/99 Alcoy]
          Length = 624

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 250/641 (39%), Gaps = 43/641 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+     S   S   V V  + +   +F  ++
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +       Q +  +     A    L  ++L+ +++     Q     G E    +    I 
Sbjct: 61  R--RTRAQQDLPQMTA---ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F  +D  FS   +   L+      + + +   + +        F+G     +  + 
Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIK 174

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  R Y + R  DY+ + +      A  S   +  ++ ++   +   E   + Y+L  +H
Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLTMH 234

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288
           + + +I+IS DE+++ YE+NK  Y +P    V  ++F              +++ADE + 
Sbjct: 235 DIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYS 294

Query: 289 SLKKG-KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            LKK  ++F +    +    LS  + G               + +L + G+ +  +   +
Sbjct: 295 DLKKHPEQFDKYVASKSDDKLSIANKGILPWITGGQNEYGRVLSNLTRPGEISTPVQTKY 354

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEIS 405
           GY I  +   KP  T S QEV+  I +Q+    A  K  +  ++L +       S+D + 
Sbjct: 355 GYEIFKLIAYKPVTTKSLQEVENIIKDQLTSDMAQAKYAQVLEQLTDLSYQTPDSLDPVL 414

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463
              K+    +   +   +D   + +      +Q++   F  D  +  +    + + + S 
Sbjct: 415 DSLKL---KMQHTEPFSRDGGKQPITK---NKQVIHAAFSTDVLELGNNSEPIQIDNDSV 468

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK--EGKNFRDIG 521
           + +++K+ IP+R++ L+EV   +KK        +   +KA ++        E K  +++ 
Sbjct: 469 IVLRVKKHIPSREQTLDEVRDQIKKIL----AKQYGDAKAKEIGSSLLHPVEDKQQQELI 524

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
            N      +    +R  ++      D     F+      +   I +   YVV K+     
Sbjct: 525 ANNQFEWHSVENASRDSDKANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRIND 581

Query: 582 GPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           G +     +++D  I  +         D  +  L     + 
Sbjct: 582 GKLSSLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHAKIE 622


>gi|294339748|emb|CAZ88110.1| putative Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase
           D) PpiD [Thiomonas sp. 3As]
          Length = 640

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 112/645 (17%), Positives = 229/645 (35%), Gaps = 44/645 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IRK S+  +  +  V++F  F+++G+         +     VG Q +       + 
Sbjct: 1   MLESIRKHSK-LMQIVLFVLIFPSFVLFGIQGYSSFEGSADAAAKVGGQTISMQQLDAAN 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E+  +   +G  V+ ++  +     + LD ++    L        LE    +V   I 
Sbjct: 60  RDEIARLQSMLGSAVDIKQLDTPEQKLRTLDGMIRQTLLQLEARREHLEVTDAQVQQAIL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + P        D  F    + S +A +G+N  ++     + L    V+    G +  S  
Sbjct: 120 QIPQIAALRKPDGSFDVQAYRSLIAAQGMNTAQFEAQVREQLILQQVLSGLAGSVIDSQA 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L   A +   + R V   +       A    +   +  +++     ++ PE   I Y++ 
Sbjct: 180 LATAAAKAAAQQRVVRLALFKPADYTAQVQVTPQEVETFYKNNTARFQKPESADIQYVVL 239

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293
              E    I+++ ++ +A Y+ N  K+ +P  R    ++     +A  A Q   K     
Sbjct: 240 SAAEVAAGIKVTAEQAKAFYDANLSKFSTPAERRASHILIAVPTDATAAQQEQAKARAEA 299

Query: 294 ---------KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                     +F  LA    ++ G +     LG F+ + +     AD++F + K G+   
Sbjct: 300 IAKQVKANPAEFPALARKDSQDPGSAEKGGDLGYFTADAMVKP-FADAVFGMQKIGEIAG 358

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
            I   FGY I  ++ IKP     F  VK  I  Q++   A +++  D +     +     
Sbjct: 359 PIKTQFGYHIIELTGIKPGAQQPFDAVKASIEKQLQQEAAQKQMSADVEAFTNAVFEHPD 418

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH--TVA 457
           S   +  +  +       V    +      V+ +   +  L  +F +    +K +   + 
Sbjct: 419 SFQAVEDKLHLKVQSASNVTRTPQPAAPDAVSPL-SSKAFLDALFAESSLRNKHNLQAIQ 477

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           +    +   ++    PA+   L +V T  ++     K AE       Q            
Sbjct: 478 IAPNVWASARVLSFSPAQTLPLAQVQTQARQMLVDQKAAELARKAGEQ------------ 525

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
             +      +      IN +           +S+ F      +      +     Y V +
Sbjct: 526 -ALKSPATLTFGAPQTIN-LTQPTPGVSPLIVSKAFGLSASKLPATAGVDLGAQGYAVLQ 583

Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +     G  P Q      +   Q + + ++++ I  LK ++ V +
Sbjct: 584 LDKVIEGQAPAQLISAAANAEQQALTQGVMNAYIEALKKRFGVEI 628


>gi|148359402|ref|YP_001250609.1| hypothetical protein LPC_1300 [Legionella pneumophila str. Corby]
 gi|148281175|gb|ABQ55263.1| hypothetical protein LPC_1300 [Legionella pneumophila str. Corby]
          Length = 624

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 251/641 (39%), Gaps = 43/641 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+     S+  S   V V  + +   +F  ++
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSLQISDAKVIVNDKPITMQAFETNY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +       Q +  +     A    L  ++L+ +++     Q     G E    +    I 
Sbjct: 61  R--RTRAQQDLPQMTA---ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F  +D  FS   +   L+      + + +   + +        F+G     +  + 
Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIK 174

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  R Y + R  DY+ + +      A  S   +  ++ ++   +   E   + Y+L  +H
Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLTMH 234

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288
           + + +I+IS DE+++ YE+NK  Y +P    V  ++F              +++ADE + 
Sbjct: 235 DIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYS 294

Query: 289 SLKKG-KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            LKK  ++F +    +    LS  + G               + +L + G+ +  +   +
Sbjct: 295 DLKKHPEQFDKYVASKSDDKLSIANKGILPWITGGQNEYGRVLSNLTRPGEISTPVQTKY 354

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEIS 405
           GY I  +   KP  T S QEV+  I +Q+    A  K  +  ++L +       S+D + 
Sbjct: 355 GYEIFKLIAYKPVTTKSLQEVENIIKDQLTSDMAQAKYAQVLEQLTDLSYQTPDSLDPVL 414

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463
              K+    +   +   +D   + +      +Q++   F  D  +  +    + + + S 
Sbjct: 415 DSLKL---KMQHTEPFSRDGGKQPITK---NKQVIHAAFSTDVLELGNNSEPIQIDNDSV 468

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK--EGKNFRDIG 521
           + +++K+ IP+R++ L+EV   +KK        +   +KA ++        E K  +++ 
Sbjct: 469 IVLRVKKHIPSREQTLDEVRDQIKKIL----AKQYGDAKAKEIGSSLLHPVEDKQQQELI 524

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
            N      +    +R  ++      D     F+      +   I +   YVV K+     
Sbjct: 525 ANNQFEWHSVENASRDSDKANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRIND 581

Query: 582 GPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           G +     +++D  I  +         D  +  L     + 
Sbjct: 582 GKLSSLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHAKIE 622


>gi|83942589|ref|ZP_00955050.1| hypothetical protein EE36_16152 [Sulfitobacter sp. EE-36]
 gi|83846682|gb|EAP84558.1| hypothetical protein EE36_16152 [Sulfitobacter sp. EE-36]
          Length = 614

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 132/595 (22%), Positives = 254/595 (42%), Gaps = 21/595 (3%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
              + TV  VG + +    +    +Q++  I  + G  ++ + A+++GLD+ +L  LV  
Sbjct: 33  NGSARTVGEVGDKSISVDDYARELQQQIRAIESQSGEQLSFQEAQAIGLDRAVLQRLVRL 92

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             LD   +++GL      +   +   P F G D  F  + +   L + G+NE E+     
Sbjct: 93  RALDNEADEMGLSIGDANLRERVVEIPSFQGVDGNFDREGYRFALQQAGLNENEFEQSLR 152

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQ 215
           +   RT +     GG+   +   D    +  E RS  +  L    + A   D ++A L  
Sbjct: 153 EEAGRTLLQEAITGGVAMPDAYADTLVSYVGEQRSFTWAKLTQDDLDAPLPDATDAQLQA 212

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++++  D +  P  K ISYI     +   ++E++++ELQA Y+   ++Y  PE R VE+L
Sbjct: 213 YYDENADQFILPASKTISYITMGPQDLLDEVELTDEELQAAYDDRADEYIQPERRLVERL 272

Query: 276 VFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           VF +Q+ AD+A  +L+  G  F  L  ++G SLSD+ LG  S++ +   +  D++F+ AK
Sbjct: 273 VFRDQEAADQAAAALEVDGNTFEGLVADRGLSLSDVDLGDLSQQQLG--AAGDAVFA-AK 329

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            GD    +  + G  +  V+ + PS   +F+E +  +   +   +A+  V+   + L++ 
Sbjct: 330 VGDIVGPLPSNLGPALFRVNGVLPSLNTTFEEARPTLVQDLAADRAARLVEVRAQDLDDQ 389

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           LA G ++++I+   K+    +     +      + +AA     +   R+   D P     
Sbjct: 390 LAGGATLEQIAEESKMTLSTIEWTQDSS-----ESIAAYAGFREAATRLTEGDFP----Q 440

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
              L DGS   +++  +   R    +    DV + W+  +    +  KA  L  E + +G
Sbjct: 441 IQQLDDGSVFAMRLDGTKEERPNPFDAARADVAEAWQNEQLITALRVKAETLQAELA-DG 499

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
            +F      LG    T     R D          I+ VF      V+     + ++ V  
Sbjct: 500 ADFA----ELGLEPKTGTDQTR-DAVVSAAPQGFIAAVFDATPGEVELLEGADEVALVRL 554

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
                  G      +  + +   ++  L  ++ A             + Q+ ++ 
Sbjct: 555 DSIK-DAGENDRMTQVKTQIATQLDDQLSQALFAAFSDDVIRRTAPRVDQQAINA 608


>gi|303257878|ref|ZP_07343887.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales
           bacterium 1_1_47]
 gi|302859221|gb|EFL82303.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales
           bacterium 1_1_47]
          Length = 645

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 116/642 (18%), Positives = 241/642 (37%), Gaps = 39/642 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M +  R   R W+  I ++++   F+  G++        ++ +  V  + +    F    
Sbjct: 5   MFQSFRNQKR-WLMLIAMILIIPAFVFIGINGYSRLNPDANAIAKVDGKGIQPEEFDYQK 63

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ +  + Q+ G  V+     +   +  IL N+ +   L   +    +          I 
Sbjct: 64  REYIERMRQQEGGAVDPSIFETQEANAAILQNIATRRALQAQMAHHYMNVSEADAINVIK 123

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +  F  KD +FS +++ + LA  G ++++++    + L +  +V             + 
Sbjct: 124 NADAFK-KDGQFSPELYENYLAARGKSDQQFVYELRRDLVQDMLVNSVAQTTFVPKKTVA 182

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                  E R V  +  +          S   + ++++++KD+YRAPE   I +++    
Sbjct: 183 LLNDILRETRVVRTMSFDPSSYMKDVKVSEEQIKKYYDEHKDDYRAPESLNIQFVVMSPE 242

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--------------NQKEADEA 286
             +   E S  EL+  YE+N++KY   E R    ++                 + +A++ 
Sbjct: 243 TVKMTAEPSEQELKDFYEQNRKKYEVEESRRAAHILIAPDANEADKAKADQDAKAKAEKI 302

Query: 287 FQSLKKGKK-FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
              +K     F QLA+E         S   L  F++  +       ++F  AKK +    
Sbjct: 303 LAEVKADPSKFAQLAKENSADPGTAESGGDLDFFTQGQMV-PEFDKAVFG-AKKDEIVGP 360

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTS 400
           +   FGY I HV++I P+    F+EV+ +I    +         E+       +     S
Sbjct: 361 VKTEFGYHIIHVTDINPAHVRPFEEVRSEILKFWQDQHRQSMFAENADGFTNMVYEQSDS 420

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VAL 458
           +D    +  +    L  +  +G      +   I   ++++  +F  D    K +T  V +
Sbjct: 421 LDPAVEKYGLTLHTLDGLTQSGLPKTSPDAQYI--TKRVIEDLFSPDCLQEKRNTQAVEV 478

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
              + +  +I +  PA  +  +EV  ++K   +  + +  ++ KA +  L   K  K+  
Sbjct: 479 AANTLVSARIVKHTPAHIKSFDEVKGEIKDQLELEQAS-ALAKKAGEAKLAELKAKKDLE 537

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
             G  L     T ++IN           +      S P       P     +YV+  V +
Sbjct: 538 GFGHEL-----TVSRINPQSQSMPLIQAEMAVPAKSLPAFTGTTVP---DGAYVISYVES 589

Query: 579 SKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           SK+    +   D+         ++    S    LK  Y + +
Sbjct: 590 SKMPAADDSQVDEIRGEALTSQSRADEASFYEGLKKLYKMEI 631


>gi|260577282|ref|ZP_05845256.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacter sp. SW2]
 gi|259020526|gb|EEW23848.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacter sp. SW2]
          Length = 625

 Score =  346 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 124/602 (20%), Positives = 239/602 (39%), Gaps = 23/602 (3%)

Query: 28  WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
           +G+++     SG S + +VG +K+  + +  + +QEL   S ++G  V+ +     G+D+
Sbjct: 35  FGVTNF---GSGVSEIGAVGDRKIDVNQYARALQQELAAFSAQVGSTVSLQEGIERGIDR 91

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           ++   L+  A LD   + IGL     RV  E+A    F G    F  + + + L    + 
Sbjct: 92  QVRQQLLIAAALDNEADRIGLSVGDARVARELAGMAAFQGAGGSFDRETYRATLKNNSLT 151

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIA 206
           E ++  +    LSR+ + G   GG+     L D    F  E R    + L    +  A+ 
Sbjct: 152 EADFEGNLRDDLSRSLLQGAVSGGIVAPAALTDTLYSFIAERRGFSLLRLTEADLKTAVP 211

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
            P+ A L   +      +  PE +RI+Y           + +    L+A Y+   +++  
Sbjct: 212 APTEADLQAHYTANLPAFTKPEARRITYAALFPATLATTMPVDEAALKALYDSRIDEFVQ 271

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
           PE R VE+LV+P + +A  A   L  G  F  L  E+G +L  I +G   K  +   +  
Sbjct: 272 PEKRLVERLVYPTEADATAARAKLDAGTPFETLVAERGLTLEAIDMGDVGKADLG--AAG 329

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +++F+L + G     +    G  +  ++ I  +  VSF++ +  +   M+   A   + +
Sbjct: 330 EAVFALTEPGVV-GPLATDLGPALLRMNAILAAQNVSFEDARDTLVPDMQQDAARRAIGD 388

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
             + +++ LA G S++++ +   +    +  V     + +   +   P   +   +    
Sbjct: 389 KLEAIDDALAGGASLEDLGKEFGMAVASIDFVPEVPAEGE-DAITGYPAFREAATQAVEG 447

Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
           D       TV L DG  + +++ E +PA    L++    V   W+      +  +     
Sbjct: 448 DFA----QTVQLDDGGVVALRLDEIVPAAPIPLDQAQEAVTASWRKA-AVAQALAARAAE 502

Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
           +    + G    D G         T +I R D   +    D +S VF  P   V      
Sbjct: 503 IKAAVEGGDTLADYGTPA-----VTPEIAR-DGFVEGAPADILSTVFKLPQAGVGLVQGP 556

Query: 567 NGLSYV-VFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
           +    V V  +T +          K    + + Q + +D        L     + + +  
Sbjct: 557 DFTGLVQVDSITPAAASGEAADALKASLNAQIEQALAQDAFLMFSNTLAQTAGIRLDEAA 616

Query: 623 IQ 624
           I 
Sbjct: 617 IN 618


>gi|307822662|ref|ZP_07652893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter
           tundripaludum SV96]
 gi|307736266|gb|EFO07112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter
           tundripaludum SV96]
          Length = 620

 Score =  346 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 117/638 (18%), Positives = 251/638 (39%), Gaps = 42/638 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IR+ ++   A   L+++ VPF +WG+ + L      + V SVG +         ++
Sbjct: 1   MLTKIREKAQGAFAWGILIIICVPFALWGIQNYL-DTGEEAPVASVGDKDFFQRDVNKAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q    +                 L  + L+ L+    L Q++   GL          I 
Sbjct: 60  EQYSQNLQGMT--------IDEQTLKAQALEKLIKDEVLLQYVHANGLVTTDDAAREFIQ 111

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   D KF    + + L  + ++  E+++     L         +     +   ++
Sbjct: 112 SLPYFQ-VDGKFDDKRYKTMLNLQKMSSGEFVNRIKNALIMEQFQRSIIDSSFATKYDVE 170

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              +   + R VDY+ +  + +     P+   +  ++++++D Y+ PE   + YI   + 
Sbjct: 171 SFFKIQNQQRDVDYVTVAVQKLAEQ--PAEEEIAAYYQQHQDLYQTPEQVSVEYIELSLE 228

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK--- 292
           +  K I +++D+L+A YE+ K++Y +PE R +  ++F      ++K A E     +K   
Sbjct: 229 DIAKTIAVTDDKLKAFYEEQKDQYTTPERRKISHILFAINDKVDEKTALEKALKAQKELA 288

Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            K F  +A E         +   LG F+   + + S  D+  +L K G+ +  +  +FGY
Sbjct: 289 NKDFAAVAAEVSDDKLTAKTGGDLGLFNAG-VMEKSFEDAASAL-KLGEVSNPVKSAFGY 346

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  V+ + P     F+ VK ++    +  +A     E  + L E      + D +    
Sbjct: 347 HLIKVTELVPGEIKPFESVKNEVTKAYQKAQAENAFYEAGETLTEMSYE--NPDNLKTVA 404

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD-PLSKDHTVALPDGSYMWVQ 467
             + + +       KD       +I   E++    F ++    +    + L     + ++
Sbjct: 405 DALGVTIKKSALFTKDKGD----SIAADEKIRNAAFTEEVLQGNNSTPIELGTDRLVVLR 460

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + E  PA  R+L +V  D+     + K  ++    + ++     + G++ + +       
Sbjct: 461 MLEHKPAAARELSDVKKDIVAVLLSDKAKQQAIETSKKIKTRL-QAGESIQTVAAENKLQ 519

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVGPVQ 585
           + T   + R   +        I +  + PV       I        VV  ++  K G + 
Sbjct: 520 VKTVAGLTRSKEDVPLPLSQAIFKA-AKPVGGKPTVFIAELPAGEQVVVSLSKVKEGVMT 578

Query: 586 EKDK-----FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           E DK         + +   +   +++I  L+++  ++V
Sbjct: 579 EDDKKQMELATKNIAKAFGQTEFNALINSLQAEADISV 616


>gi|33152751|ref|NP_874104.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus ducreyi 35000HP]
 gi|38605184|sp|Q7VKX4|PPID_HAEDU RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
 gi|33148975|gb|AAP96493.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus ducreyi 35000HP]
          Length = 620

 Score =  346 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 106/640 (16%), Positives = 246/640 (38%), Gaps = 35/640 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + + +   K+   ++ + F++ G+   L     S   V V    +   +F  + 
Sbjct: 1   MIEKMHERTNSVAFKVIFALVSLSFVLTGIGTGLVGADTS--AVKVNGTTIDQHAFNTAK 58

Query: 61  KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G          E A+     + +LD LV+   + Q+ +D+ L     ++
Sbjct: 59  ARQQNVLNAQLGERFWDLLDTPEYAKQFN--QSVLDGLVNDELMRQYAKDLKLGISANQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             +I  S +F  +D KF+++++   L   G+    Y     + +  + +    V      
Sbjct: 117 KSQIVNSQIFQ-QDGKFNNELYQHTLRNNGLTADGYAAIVNEGMLLSQIQKGIVESDFSV 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            +      +   + R V           A    S   L ++++  K +   PE   + Y+
Sbjct: 176 PVTEALLAKLLLQQRQVRLATYPIAKEIANQTASVEELQKYYDAKKTDLVEPEQLVVEYV 235

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            F   + EK I+++++++   YEKNK  + +     +  +   N+++A +  ++LK+G  
Sbjct: 236 TFMPKDIEKNIQVTDEQVATYYEKNKADFVTKGETHLAHIQLANEEKAKQVAEALKQGTD 295

Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA +             LG       P++    +  +LA   + +  +     Y I 
Sbjct: 296 FAMLANDTSTDSLSAQQGGDLGWTKAGIFPEI-FEQTANALAIN-EVSEPVKVDNNYHII 353

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            V + K    + F+ VK  I   +R      +       +       +S   ++   +I 
Sbjct: 354 KVLDRKEDVALPFEMVKDKIVKIIRDELLLTEYSNISHEMANKAFENSS--SLAEVAQIA 411

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMWV 466
            +++       +    + + A    E+++  +F  +   S  ++ AL  G+      M+V
Sbjct: 412 GVNVQTSTQFNR----EHIPADLNNEKVIKALFNGELRQSGQNSDALDVGNEREPKTMFV 467

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++++  P R R  +E   D+++  K  K  + + +KA + V   ++        G  +  
Sbjct: 468 RVRDFYPERVRTFDEAKADIEQIVKHQKAEQLLLAKAEENVKALNE--------GNAVNV 519

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
                  +      +    +  +  +     +             V+  +     G  +E
Sbjct: 520 DFNEAETLVYAKRADNPILFKTVFAMQKPTDKPTYQVTHNQQGDVVIVSLEKVIDGKQEE 579

Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                S L Q+    L + ++  L+S+ SV V+ N I++ 
Sbjct: 580 FAPLASQLKQLDQTLLRNDLLKDLRSRASVDVNQNFIEQL 619


>gi|15837793|ref|NP_298481.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c]
 gi|9106161|gb|AAF84001.1|AE003953_5 peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c]
          Length = 655

 Score =  346 bits (888), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 117/671 (17%), Positives = 244/671 (36%), Gaps = 64/671 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
           ML+ +R+ +  W+A   + +L +PFL   +        G   V  +              
Sbjct: 1   MLQKLREKTSGWIATAIIGLLVIPFLFV-IDVRYIEGGGKDDVAQLQASPTWWKSAPAFW 59

Query: 48  -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                  RQ +    F + + Q       + G   ++    ++    K+LD L+    + 
Sbjct: 60  PISLLWQRQGISKQEFQSRFDQARLQQRAQQGEGFDAREFETLNNKLKLLDQLIEEHVMR 119

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI--NEKEYIDHYTKM 158
              E  G+    G V   IA    F  K  KF+ D +   LA+E      + Y ++   M
Sbjct: 120 LVAEGAGVVISDGAVRSIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYENYVRSM 178

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +  + +           N  L++      + R+ + + L    +  +A+ S+  + +W+ 
Sbjct: 179 MQLSMIPSTIFDSGFVPNTELERILVLLGQTRNAELVTLPALKL-DMAEISDMQIKEWYA 237

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF- 277
            ++D++R PE     Y+  D     +    S   L+  Y+  +      E R    ++  
Sbjct: 238 AHRDDFRQPETLSFEYVDLDAAHLPRP-TPSEAVLRKRYDAQQRGEAQNEQRKAAHILIT 296

Query: 278 -----PNQKEADEAFQSL-----KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323
                 +QK A+     L     K G  F  LA    ++ G   +   LG   +  +   
Sbjct: 297 AGADAASQKVAEAKAAKLVEEARKPGVDFAALARINSQDPGSKDAGGDLGWVQRGMMVKP 356

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D +F++ K G+    I   FG  +  +  IK +  + F+ V+  +A +       ++
Sbjct: 357 -FEDVLFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQLAAEQTKEDIDKE 414

Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L + L    T +   S +  +    L  +           +AA P  +++LF 
Sbjct: 415 FNDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSR----RDAVGIAANPAVQRVLFN 470

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                +    D  + +     + +++      +   L++V   V    +  +  ++ +S 
Sbjct: 471 HDFIQEGKVSD-PIQINPNHSVVLRVIAHTTEQQLPLDKVREQVVAAVRADRADKDGASA 529

Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS-----GPV 557
           A+ LV    K G   +++ K     +     + R     +   +     +FS        
Sbjct: 530 ADALVARLQK-GDTLQEVAKAEKLQITPLTGLQRT---AQVPAFAATRAIFSALSPVAGK 585

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
             V    +++G  Y VF VT    G     P ++K      L Q+     + + +  ++ 
Sbjct: 586 PTVGKVRLDDG-RYAVFTVTRVIPGDLTKLPEEQKAMLRQQLDQIEGTLAVHAYVDMMRK 644

Query: 613 QYSVTVHDNLI 623
           ++ VT+H + +
Sbjct: 645 RFKVTIHKSQL 655


>gi|331000463|ref|ZP_08324138.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
           YIT 11859]
 gi|329571795|gb|EGG53475.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
           YIT 11859]
          Length = 641

 Score =  346 bits (888), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 116/642 (18%), Positives = 241/642 (37%), Gaps = 39/642 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M +  R   R W+  I ++++   F+  G++        ++ +  V  + +    F    
Sbjct: 1   MFQSFRNQKR-WLMLIAMILIIPAFVFIGINGYSRLNPDANAIAKVDGKGIQPEEFDYQK 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ +  + Q+ G  V+     +   +  IL N+ +   L   +    +          I 
Sbjct: 60  REYIERMRQQEGGAVDPSIFETQEANAAILQNIATRRALQAQMAHHYMNVSEADAINVIK 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +  F  KD +FS +++ + LA  G ++++++    + L +  +V             + 
Sbjct: 120 NADAFK-KDGQFSPELYENYLAARGKSDQQFVYELRRDLVQDMLVNSVAQTTFVPKKTVA 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                  E R V  +  +          S   + ++++++KD+YRAPE   I +++    
Sbjct: 179 LLNDILRETRVVRTMSFDPSSYMKDVKVSEEQIKKYYDEHKDDYRAPESLNIQFVVMSPE 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--------------NQKEADEA 286
             +   E S  EL+  YE+N++KY   E R    ++                 + +A++ 
Sbjct: 239 TVKMTAEPSEQELKDFYEQNRKKYEVEESRRAAHILIAPDANEADKAKADQDAKAKAEKI 298

Query: 287 FQSLKKGKK-FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
              +K     F QLA+E         S   L  F++  +       ++F  AKK +    
Sbjct: 299 LAEVKADPSKFAQLAKENSADPGTAESGGDLDFFTQGQMV-PEFDKAVFG-AKKDEIVGP 356

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTS 400
           +   FGY I HV++I P+    F+EV+ +I    +         E+       +     S
Sbjct: 357 VKTEFGYHIIHVTDINPAHVRPFEEVRSEILKFWQDQHRQSMFAENADGFTNMVYEQSDS 416

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VAL 458
           +D    +  +    L  +  +G      +   I   ++++  +F  D    K +T  V +
Sbjct: 417 LDPAVEKYGLTLHTLDGLTQSGLPKTSPDAQYI--TKRVIEDLFSPDCLQEKRNTQAVEV 474

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
              + +  +I +  PA  +  +EV  ++K   +  + +  ++ KA +  L   K  K+  
Sbjct: 475 AANTLVSARIVKHTPAHIKSFDEVKGEIKDQLELEQAS-ALAKKAGEAKLAELKAKKDLE 533

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
             G  L     T ++IN           +      S P       P     +YV+  V +
Sbjct: 534 GFGHEL-----TVSRINPQSQSMPLIQAEMAVPAKSLPAFTGTTVP---DGAYVISYVES 585

Query: 579 SKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           SK+    +   D+         ++    S    LK  Y + +
Sbjct: 586 SKMPAADDSQVDEIRGEALTSQSRVDEASFYEGLKKLYKMEI 627


>gi|52842082|ref|YP_095881.1| hypothetical protein lpg1855 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629193|gb|AAU27934.1| peptidyl prolyl cis-trans isomerase D [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 624

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 249/641 (38%), Gaps = 43/641 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+     S   S   V V  + +   +F  ++
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDRPITMQAFETNY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +       Q +  +     A    L  ++L+ +++     Q     G E    +    I 
Sbjct: 61  R--RTRAQQDLPQMTA---ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F  +D  FS   +   L+      + + +   + +        F+G     +  + 
Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIK 174

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  R Y + R  DY+ + +      A  S   +  ++ ++   +   E   + Y+L  +H
Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTLEQVTLDYVLLSMH 234

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288
           + + +I+IS DE+++ YE+NK  Y +P    V  ++F              +++ADE + 
Sbjct: 235 DIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYS 294

Query: 289 SLKKG-KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            LKK  ++F +    +    LS  + G               + +L + G  +  +   +
Sbjct: 295 DLKKHPEQFDKYVASKSDDKLSIANKGILPWITGGQNEYDRVLSNLTRPGQISIPVQTKY 354

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEIS 405
           GY I  +   KP  T S QEV+  I +Q+    A  K  +  ++L +       S+D + 
Sbjct: 355 GYEIFKLIAYKPVTTKSLQEVENIIMDQLTSDMAQAKYAQVLEQLTDLSYQTPDSLDPVL 414

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463
              K+    +   +   +D   + +      +Q++   F  D  +  +    + + + S 
Sbjct: 415 DSLKL---KIQHTEPFSRDGGKQPITK---NKQVIHAAFSTDVLELGNNSEPIQIDNDSV 468

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK--EGKNFRDIG 521
           + +++K+ IP+R++ L+EV   +KK        +   +KA ++        E K  +++ 
Sbjct: 469 IVLRVKKHIPSREQTLDEVRDQIKKIL----AKQYGDAKAKEIGSSLLHPVEDKQQQELI 524

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
            N      +    +R  ++      D     F+      +   I +   YVV K+     
Sbjct: 525 ANNQFEWHSVENASRDSDKANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRIND 581

Query: 582 GPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           G +     +++D  I  +         D  +  L     + 
Sbjct: 582 GKLSSLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHAKIE 622


>gi|83953830|ref|ZP_00962551.1| hypothetical protein NAS141_06383 [Sulfitobacter sp. NAS-14.1]
 gi|83841775|gb|EAP80944.1| hypothetical protein NAS141_06383 [Sulfitobacter sp. NAS-14.1]
          Length = 614

 Score =  346 bits (887), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 132/595 (22%), Positives = 254/595 (42%), Gaps = 21/595 (3%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
              + TV  VG + +    +    +Q++  I  + G  ++ + A+++GLD+ +L  LV  
Sbjct: 33  NGSARTVGEVGDKSISVDDYARELQQQIRAIESQSGEQLSFQEAQAIGLDRAVLQRLVRL 92

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             LD   +++GL      +   +   P F G D  F  + +   L + G+NE E+     
Sbjct: 93  RALDNEADEMGLSIGDANLRERVVEIPSFQGVDGNFDREGYRFALQQAGLNENEFEQSLR 152

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQ 215
           +   RT +     GG+   +   D    +  E RS  +  L    + A   D ++A L  
Sbjct: 153 EEAGRTLLQEAITGGVAMPDAYADTLVSYVGEQRSFTWAKLTQDDLDAPLPDATDAQLQA 212

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++++  D +  P  K ISYI     +   ++E++++ELQA Y+   ++Y  PE R VE+L
Sbjct: 213 YYDENADQFILPASKTISYITMGPQDLLDEVELTDEELQAAYDDRADEYIQPERRLVERL 272

Query: 276 VFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           VF +Q+ AD+A  +L+  G  F  L  ++G SLSD+ LG  S++ +   +  D +F+ A+
Sbjct: 273 VFRDQEAADQAAAALEVDGNTFEGLVADRGLSLSDVDLGDLSQQQLG--AAGDDVFA-AE 329

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            GD    +  + G  +  V+ + PS   +F+E +  +   +   +A+  V+   + L++ 
Sbjct: 330 VGDIVGPLPSNLGPALFRVNGVLPSLNTTFEEARPTLVQDLAADRAARLVEVRAQDLDDQ 389

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           LA G ++++I+   K+    +     +      + +AA     +   R+   D P     
Sbjct: 390 LAGGATLEQIAEESKMTLSTIEWTQDSS-----ESIAAYAGFREAATRLTEGDFP----Q 440

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
              L DGS   +++  +   R    +    DV + W+  +    + +KA  L  E + +G
Sbjct: 441 IQQLDDGSVFAMRLDGTKEERPNPFDAARADVSEAWQNEQLITALRAKAETLQAELA-DG 499

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
            +F      LG    T     R D          I+ VF      V+     + ++ V  
Sbjct: 500 ADFA----ELGLEPKTGTDQTR-DAVVSAAPQGFIAAVFDAAPGEVELLEGADEVALVRL 554

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
                  G      +  S +   ++  L  ++ A             + Q+ ++ 
Sbjct: 555 DSIK-DAGENDRMTQVKSQIATQLDDQLSQALFAAFSDDVIRRTAPRVDQQAINA 608


>gi|40062782|gb|AAR37676.1| peptidyl-prolyl cis-trans isomerase, putative [uncultured marine
           bacterium 439]
          Length = 613

 Score =  346 bits (887), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 111/632 (17%), Positives = 242/632 (38%), Gaps = 28/632 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IRK S+ WVA + + ++ VPF ++G+ + +   S +S V SV  + +    +    
Sbjct: 1   MLGAIRKKSKGWVAYLIVGLITVPFALFGIQEYM-GGSSNSAVASVDGEDISLDYYYQKL 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++G   ++E      L + ++D+L++   L+ F   + L      V   I 
Sbjct: 60  NTQQRNLQQQLGASYSAEI--DNALRQTLIDSLINEKLLENFTNSMKLVTLEEEVRSFIQ 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P+F   D  FS + ++  L   G     Y    +K +S   +          S + +D
Sbjct: 118 SNPVFQ-VDGVFSEERYIQLLRLNGFTPLAYELEQSKSMSLDQIKRNLNNSAFLSTVQID 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q      + R V ++VL+              ++++F+  K N+      ++ ++   + 
Sbjct: 177 QLNDLSAQERDVSFLVLSTEKYKEQIIVDQDQISEYFDNNKSNFIEGHKVQVDFVELSLD 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
             E++    N+ L+  Y +N+E Y + E R  + ++   +  A    + +K+G  F +LA
Sbjct: 237 NIEQQTNPDNETLRKLYVENEELYTNSEQRRAQHILLEEESNARAILKEIKEGGDFSELA 296

Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
               K +        LG F +E +       ++F +   GD + V+   +GY I  ++ I
Sbjct: 297 RIHSKDITTSEEGGDLGLFERELMV-PEFDKAVFDM-DVGDISEVVKTDYGYHIIKLNEI 354

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +PS   SF+EV+  +    +     E + E  + L   L+   S+D +S +  +      
Sbjct: 355 QPSTLQSFEEVEGQLLVLHKKNVNQEALYELQEELSN-LSYEESIDVVSSQLDLELQTSD 413

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
                  +   +   +  + + +       D        + L    ++ + +    P R 
Sbjct: 414 FFSEYSTEYD-EVFVSTAFSDIVFKEGENSD-------VIELSKDRFIVMTLANQQPERQ 465

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE-GKNFRDIGKNLGASLLTTNQIN 535
           + L+EV   +    + +   + +   A  +    +       + +             I 
Sbjct: 466 KVLDEVEDQIVDIVRNIGAKQLIDDLAQNISSSLTSGDDAQVKTLMVENDLEWNDVGWIT 525

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFP----IENGLSYVVFKVTNSKVGPVQEKDKFI 591
           R    +    ++  S+V+                 +  + +V  +   K+       + I
Sbjct: 526 R----DSQLPFNATSKVYKLSKPNTGEHTYHSQSADANTTLVIDLKAVKLSDEVINSETI 581

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
                  N +L  S++  L+    + V  +L+
Sbjct: 582 DLYLSEENNELFLSLVKKLRDSAEIKVFSDLL 613


>gi|322514009|ref|ZP_08067083.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC
           25976]
 gi|322120159|gb|EFX92120.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC
           25976]
          Length = 625

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 103/640 (16%), Positives = 236/640 (36%), Gaps = 34/640 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + +   V KI   ++ + F+I G+   L  V  S     V    +   +F  + 
Sbjct: 1   MIEKMHERTNGPVFKIIFALVSLSFVITGIGTGLAGVDTS--AAKVNGTAIEQQAFNAAK 58

Query: 61  KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++  +++ ++G            +   ++ IL+ L+    L Q+ +++ L     ++  
Sbjct: 59  SRQQNILNTQMGERFWDLLDTPEYAAQFNQSILNGLIDDELLRQYAQNLKLGISAEQIKS 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI  SP F  +D KF++ ++   L   G++   Y     + +  + +    VG       
Sbjct: 119 EIVHSPTFQ-QDGKFNNQLYQQALRNNGLSADGYAAIVNEAMLFSQIQEGIVGSHFSVPA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +   +   + R V     +          S   L  +++ +K+ +  PE   I Y+  
Sbjct: 178 EQELLAKLLLQKRQVRLANYSVAAEAQNQTASGEELQAYYDAHKNAFVEPEKLAIEYVTL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                 K ++++++++   YEKNK  Y +     +  +   N+ +A    Q L  G  F 
Sbjct: 238 TPENVAKNVQVTDEQIATYYEKNKADYVTQGETHIAHIQVANEADAKALEQQLAGGADFS 297

Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+ +            LG       P  +  D+   L + G  +  ++    Y I  V
Sbjct: 298 ALAKAKSTDKLSAAQGGDLGWAKVGTFPK-AFEDAANGL-QVGAVSQAVNVDGAYHIIKV 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVS 412
              K    +  ++VK +IA  +R      +     + +         S++ +++   +  
Sbjct: 356 LARKNEQAIPLEQVKDNIAKTIRNELLLTEYSNLAREMANKAFENNGSLESVAQAGGVAI 415

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMWVQ 467
                          + V A    E++L  +F  +   S  ++ AL  G       M+V+
Sbjct: 416 QKTAQFTQ-------QNVPAELNNEKVLKALFSGELRQSGQNSDALDIGDEHNPKTMFVR 468

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + +    R + L+E   DV+   K  K  + + +KA +++           + G+     
Sbjct: 469 VSDYQADRVKTLDEAKADVEVAVKQQKAEQALIAKAQEII--------KLLESGQAADVQ 520

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL-SYVVFKVTNSKVGPVQE 586
                 +     + +           + P +        +   + V+  +     G  +E
Sbjct: 521 FGAAQTLVYAQAQGQQPVLAQTVFSMTKPTDKATYSVARDEQGNVVIVALDKVMDGSSEE 580

Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                +   Q     L + ++  L+++ S+ V+++ +++ 
Sbjct: 581 FKPLAAQFNQADQLLLRNDLLKDLRAKASIEVNEDFMEQL 620


>gi|94497171|ref|ZP_01303743.1| hypothetical protein SKA58_13253 [Sphingomonas sp. SKA58]
 gi|94423276|gb|EAT08305.1| hypothetical protein SKA58_13253 [Sphingomonas sp. SKA58]
          Length = 650

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 139/641 (21%), Positives = 262/641 (40%), Gaps = 18/641 (2%)

Query: 1   MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFSV---SGSSTVVSVGRQKVPF 53
           ML + R+   +      A +FL V+   F++  ++   F     SG  T       K+  
Sbjct: 1   MLSVFRRIIHSKFGAIFAFLFLGVIAAAFILGDVTSGQFGGASLSGGGTAAKAKGYKLTV 60

Query: 54  SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
           +   +  ++      +    +   E     G   ++ D LV   TL  + +D G+     
Sbjct: 61  AELQDRVQRVFENARRSSPELQIGEFFAQGG-GAQVFDQLVQSLTLRAYADDQGIHISKR 119

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
            V  +IA+ P F      FS+D F + LARE ++E+   D  ++ + +  ++     G R
Sbjct: 120 LVDAQIAQIPAFQDAAGNFSNDNFRALLARERLSEQALRDDISREILQRQLLAPIGIGAR 179

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           PS  L+        E R      +         DP++A L  +++K  D +  PE +RI 
Sbjct: 180 PSENLVLPYASLLLEARQGQVAAIPAVAFLDDKDPTDAQLADFYKKNSDRFTIPEQRRIR 239

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           Y + D     +    S+ E+ A Y +NK  Y + E R+VEQLV P +  A      +K G
Sbjct: 240 YAVVDAERFAQASMPSDAEISAYYNQNKANYAASENRSVEQLVLPTEAGAKAIAAQVKAG 299

Query: 294 KKFIQLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           K   Q A+  G S+S +   S  +       ++AD++F+ A++G+    + G  G+++  
Sbjct: 300 KSLPQAAQGAGLSVSTLDAQSRGQLTSATSKAVADAVFA-ARQGELIGPVRGPLGWLLLR 358

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V+ ++         V+ +I   +R+ K  + + +   +LE+ +A G + DE+++   +  
Sbjct: 359 VTAVQDKPARPLAAVRDEIVKTLRVQKEKQLLGDFTAKLEDQIADGGTFDEVAKDNGLKL 418

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
              P +   GK VK     A    + LL   F              PD  Y  +   + I
Sbjct: 419 ETTPPLLATGKQVKDMAYVAPADVQPLLSPAFTMSADDDAQLVPITPDKRYALIAPGQII 478

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
            A    L EV + V+  +K     ++  + A Q+  + +K G    D     G  L    
Sbjct: 479 AAAPPPLAEVKSLVQAQYKLNAGNQKAKALAEQIRAKVAK-GTKLADAISQAGVKLPAPQ 537

Query: 533 QINRMDNE---NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
            +     +    +      +S +F+     VK  PI  G  Y V ++T  + G  +   +
Sbjct: 538 TLGGRRADIMRAEQRPPAEVSILFAMAENSVKTLPISEGRGYFVVQLTKIERGDAKGNPQ 597

Query: 590 FISYLTQMM----NKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            ++ +   M     ++  +     ++ +  VT +   +++ 
Sbjct: 598 LLAQVRDQMGEVIGQEYGEQFERAVEKELGVTRNPKAVEQV 638


>gi|330959391|gb|EGH59651.1| periplasmic folding chaperone [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 627

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 103/643 (16%), Positives = 234/643 (36%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +       +SQ++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSEAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             ++   R   + R    + L     PA    ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--PAAVKVTDDEIKAHYDQHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+++ +++LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANL--AEQRRAAHILIEVNDKLNEEQAKAKIEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     + G    ++ + + D +  D++++L K    +  +  
Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVYDPAFEDALYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     +F  +K  + N ++  +  +K  E  K+LE+     + +++ 
Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKDKLTNDLKSQQVEQKFVEVTKQLEDSAFESSYLNQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        +     ++   F  +  +  S  +T+ L   +
Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGSNSNTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   LE V + ++        +    +K   L+    ++GK      K
Sbjct: 468 VVVVRAKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGL-RDGK-IPLAAK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574
             G        + R     +      +  +F  P    K  P        +G   +V   
Sbjct: 526 QQGQDWKVMEAVTRS---QEGVDPQVLQTLFRMPKPNGKDKPEFASITAADGSFVIVRLN 582

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L     +    +  A L+S+  + 
Sbjct: 583 GVNQATAPNDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625


>gi|163731980|ref|ZP_02139426.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter
           litoralis Och 149]
 gi|161394278|gb|EDQ18601.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter
           litoralis Och 149]
          Length = 612

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 115/596 (19%), Positives = 244/596 (40%), Gaps = 30/596 (5%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
                T+ + G + +P   +    +QE+  + Q+   V+  ++A+ +GLD+ +L  LV+ 
Sbjct: 32  SGNIRTIGTAGDKPIPVDDYFRQLQQEIRAVEQQTREVLPFQQAQQMGLDRAVLQRLVAT 91

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
            +LD    ++GL      +   I +   F G + +F  + +   L + G++E E+     
Sbjct: 92  RSLDHETSELGLSIGDEELRTRILQISAFQGINGEFDREGYRFALEQTGLSEAEFETQLR 151

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQ 215
           + ++RT V G  +GG+      +D    +  E RS  + +L+   +      P +A+L  
Sbjct: 152 EEVARTIVQGAVLGGIAMPETYVDTLVSYIGEQRSFTWSLLDASDLATPLGAPDDAILRA 211

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
            ++   D +  PE K+I+Y           +E+  + L+  Y +   ++  PE R VE+L
Sbjct: 212 HYDDNIDVFTLPETKQITYAWLTPDMLLDSVEVDEEALREAYAEQSAEFNQPERRLVERL 271

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            F + + A +A  +L  G  F  L   +G +L DI LG  S+  +            A  
Sbjct: 272 AFLDTQSAQQAADALTAGDSFDDLVRGRGLALEDIDLGDVSEAELGAAGAGVFA---ADV 328

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G        + G  +  V+ +  +    F+E    +  Q+   +AS  V    +  ++ L
Sbjct: 329 GAVVGPFPSTLGPALFRVNAVLAAQETPFEEAIDVLRPQLAADRASRLVAAQAESFDDLL 388

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           A G ++++++    +V   +     +      +E+AA P   Q    V     P      
Sbjct: 389 AGGATLEDLASETDMVVAQIDWTAGST-----EEIAAYPTFRQAAASV----GPRDFPEI 439

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
            +L DG    +++   +P R    +E+  ++   W+  +TA+ ++ +    V    + G 
Sbjct: 440 ASLDDGGLFALRLDTVLPPRPAPFDEIREEIIAHWEAAETAKRLAEQVAGQVG-LLENGS 498

Query: 516 NFRDIGKNLGAS--LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
           +F D+G +      L+ +  + R            + +VF   V   K   IE+  + ++
Sbjct: 499 SFADLGLDAIVEENLIRSGFVPRT-------PPGFLEEVFDMEVG--KAQVIESDAAVIL 549

Query: 574 FKVTNSKVGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            ++               + +     +Q + +D+ +     +  +    ++   +Q
Sbjct: 550 VRLDAIAPPAADGDAAALRAQLEQQASQQLARDVFEVFANDVVLRADPQINQQALQ 605


>gi|54294744|ref|YP_127159.1| hypothetical protein lpl1821 [Legionella pneumophila str. Lens]
 gi|53754576|emb|CAH16060.1| hypothetical protein lpl1821 [Legionella pneumophila str. Lens]
          Length = 624

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 114/641 (17%), Positives = 244/641 (38%), Gaps = 43/641 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+     S   S   V V  + +   +F  ++
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +       Q +  +     A    L  ++L+ +++     Q     G E    +    I 
Sbjct: 61  R--RTRAQQDLPQMTA---ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F  +D  FS   +   L+      + +     + +        F+G     +  + 
Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQKEVRQGMLLNQQRFAFMGTSFALSDEIK 174

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  R Y + R  DY+ + +      A  S   +  ++ ++   +   E   + Y+L  +H
Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLSMH 234

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288
           + + +I+IS DE+++ YE+NK  Y +P    V  ++F              +++ADE + 
Sbjct: 235 DIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYN 294

Query: 289 SLKKG-KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            LKK  ++F +    +    LS  + G               + +L + G  +  +   +
Sbjct: 295 DLKKHPEQFDKYVASKSDDKLSIANKGILPWITGGQNEYDRVLSNLTRPGQISIPVQTKY 354

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEIS 405
           GY I  +   KP  T S QEV+  I +Q+    A  K  +  ++L +       S+D + 
Sbjct: 355 GYEIFKLIAYKPVTTKSLQEVENIIKDQLTSDMAQAKYAQVLEQLTDLSYQTPDSLDPVL 414

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463
              K+           G          I   +Q++   F  D  +  +    + + + S 
Sbjct: 415 DSLKLKIQHTEPFSRYGGK------QPITKNKQVIHAAFSTDVLELGNNSEPIQIDNDSV 468

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK--EGKNFRDIG 521
           + +++K+ IP+R++ L+EV   +KK        +   +KA ++        E K  +++ 
Sbjct: 469 IVLRVKKHIPSREQTLDEVRDQIKKVL----AKQYGDAKAKEIGSSLLHPVEDKQQQELI 524

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
            N      +    +R  ++      D     F+      +   I +   YVV K+     
Sbjct: 525 ANNQFEWHSVENASRDSDKANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRIND 581

Query: 582 GPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           G +     +++D  I  +         D  +  L     + 
Sbjct: 582 GKLSSLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHAKIE 622


>gi|83718610|ref|YP_442650.1| peptidyl-prolyl cis-trans isomerse D [Burkholderia thailandensis
           E264]
 gi|83652435|gb|ABC36498.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
           thailandensis E264]
          Length = 632

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 91/633 (14%), Positives = 225/633 (35%), Gaps = 43/633 (6%)

Query: 15  KIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
             FL+++ +P   I G+         S+ V +V   K+  + F    +Q++    Q +G 
Sbjct: 1   MFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGMLRQQVDQARQMLGA 60

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP---LFHGKDN 130
             +++   +    +++LD L+    L    + + L A  G V   +   P        D 
Sbjct: 61  QFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLLSDPVVASLKKADG 120

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
            F  + +   LA +G+   +Y +     L+   +    V        +  +      + R
Sbjct: 121 SFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKSVARRLTELAEQQR 180

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
            V  ++L +        P++A ++ +++ +K  +   E   I Y+++         + S+
Sbjct: 181 EVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQYLVYSQAAAAAAAQPSD 240

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQSLKKGKK-FI 297
            +++  Y+ N  +Y +     V  +                + +A++    +K     F 
Sbjct: 241 IDVKKYYDGNIARYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAEQLLAEVKAHPDQFA 300

Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           Q+AE+  +          LG  ++      +  D      KKG+ + V+ G FG+ I   
Sbjct: 301 QIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKGEISGVVQGDFGFHILKA 360

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIVS 412
           +++KP+      EVK  I   ++   A++   ++ +     +     S+   + +  +  
Sbjct: 361 TDLKPAVVKPLAEVKDSIVADLKQQFAAKAFADNAEGFTSTVYEKAKSLQPAADKYTL-- 418

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSYMWVQIKE 470
             +     + +        +     + L  VF  D   + ++T  + + + + +  ++  
Sbjct: 419 -TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADAVKNGNNTQAIDVGNNTLIAARVTS 477

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P+    L+ +   V+      + A          + E  K  K+          S   
Sbjct: 478 YQPSTVPALDAIKDQVRAKVVADEAARLAKQDGEAKLAELRKS-KSTAGFAAADKIS--- 533

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVGPVQEKD 588
                    +        +S ++    + +  +   +     Y +F+V +       +  
Sbjct: 534 -------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFRVNSVVAAAPADDQ 586

Query: 589 KF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +       L Q+  +   ++ +A L+++  V +
Sbjct: 587 RLAAAQQQLAQVYAQSETEAYLASLRARSKVKL 619


>gi|42520635|ref|NP_966550.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410374|gb|AAS14484.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 602

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 129/624 (20%), Positives = 273/624 (43%), Gaps = 32/624 (5%)

Query: 8   ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
             + +  K+ +V+L    +  G+ + L        V  VG++ +    + + ++     I
Sbjct: 2   NVKNFFTKVTVVLLACLLIFMGIGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQI 61

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
           S   G   + E+ + +  D  +L+ L+    L     ++GL      +   I  +  F  
Sbjct: 62  S---GSDASREQVKKLKYD--LLNGLIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQN 116

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKR 184
              +F  + F   L    + EKEYI    K+L     +        P      + +Q  +
Sbjct: 117 DKGEFDKNKFYETLNDLHMTEKEYIAKLEKVLPAMMFMTSLFKDNYPVTFGEKIDEQIYK 176

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
             ++ R VD + +    V  I +P +  L   +E+ K ++  PEY+   YI       E 
Sbjct: 177 SRYQTRVVDIVKITEDAVTNIPEPDDQALLDLYERNKSHFYYPEYRTAQYISLGQKYFED 236

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303
           +I+IS++E+    E+ + K      R +   +F  ++EA+ A ++ ++GK  F Q+ EE 
Sbjct: 237 QIKISDEEVDGIIEQQELK----NQRDIFNAIFSTKEEAETARRAFEEGKTSFEQIVEEF 292

Query: 304 GKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           GK+ L +  + + +K+++P+  + + +F+L K G+ + V+  SFG+ I  V +       
Sbjct: 293 GKAKLEETRVNNITKDFLPE-DVREKVFAL-KVGEVSEVLASSFGWHIVKVESAHQISDE 350

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
              ++KKDI + +   K+ E+V +   ++   +  G+ ++EI     +    +  VD +G
Sbjct: 351 DLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSEIEEILSEYNLPIQTIGPVDASG 410

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
           KD  G  V        L+  +F ++    K +   + D + + V+I +  P + +  EE 
Sbjct: 411 KDQSGNNVGD---SGDLISFIFSREKD-QKGYFKGVGD-AVVSVKIVDIFPPKLQSFEEG 465

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
                + W++    E +     ++ ++  ++     D+ +  G  L+   Q++R   + +
Sbjct: 466 KALAVELWRSEFIKERMFKFGQEVAVQLREK----TDLEEIQGVELVKGQQMHRNKVDQQ 521

Query: 543 FFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
            + +  + ++F+         PI+  N +   V K  +S  G +   D     +      
Sbjct: 522 NYPFSFVEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNTLDTGKRVMI----- 576

Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQ 624
            L + +I+YL+S+Y V V+  ++ 
Sbjct: 577 SLKEQLISYLESKYKVEVNHAILD 600


>gi|56416723|ref|YP_153797.1| hypothetical protein AM516 [Anaplasma marginale str. St. Maries]
 gi|222475088|ref|YP_002563503.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
           str. Florida]
 gi|56387955|gb|AAV86542.1| hypothetical protein AM516 [Anaplasma marginale str. St. Maries]
 gi|222419224|gb|ACM49247.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
           str. Florida]
          Length = 670

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 128/637 (20%), Positives = 267/637 (41%), Gaps = 33/637 (5%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQELGMI 67
           R       L  +   F+       L     +S   V  VG   +    +  +++ EL  I
Sbjct: 43  RNVFVGAVLAAVLCAFVFVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELSYI 102

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
              +   ++ +  +  G+ +  L  +V    L++F +++ L   +  +   I   P+F  
Sbjct: 103 ESLVHQKLSEDDIKRFGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMFQD 162

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV--GGMRPS---NLLLDQA 182
           K  K     F   LA  G+ E  YI      L    +        G   S   +      
Sbjct: 163 KSGKLDEQRFKDLLADAGMTEASYIGKVRDSLPAFVLSECIFPRSGEVYSQYYDGFAQDV 222

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN--YRAPEYKRISYILFDVH 240
            R   ++R+VD + ++   V   + P+++ L   + +   N     PEY+   Y++    
Sbjct: 223 LRGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSAEYMIVSED 282

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +   ++  SNDE+++E + ++      + R V  LVFP++ EA  A++++K+GK F  + 
Sbjct: 283 DALDEVTASNDEVESEIKNSELH----DQRDVLNLVFPSESEASAAYKAIKEGKAFEAVV 338

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           ++ G ++ +++L + +KE +P + + +++F L  +G+ + V     G+ +  + +  P  
Sbjct: 339 KDLGTTVEEVTLRNVTKELLP-IEVRNTVFDL-NEGEVSGVFRSVVGWHVMKILSKHPIS 396

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSID-LPLV 418
               +++K+ +A  ++  KA E      ++  E ++ G  S  E++   K  +I  L   
Sbjct: 397 AKDLKKLKEKVAMSIKRQKARELFSASIRKANEMISHGATSFSEVADVFKKPAIGALKDF 456

Query: 419 DFAGKDVKGK-----EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
           D  G+D  GK     E ++ P     L  +          H V++ + +Y  V +    P
Sbjct: 457 DSNGQDSTGKSHTYAEESSFPGIVGALPPLAFSSQVGKPSHFVSIGN-AYFSVIVTGVTP 515

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
           +R R  +E  + +   WK      E+   A+ L  +  K G+N    G  +G        
Sbjct: 516 SRTRTFDESKSLLLDKWKNAFVVGEMLKLASDLTAKL-KAGENP---GSAVGIVTKKNEN 571

Query: 534 INRMDNENKF--FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEK 587
           I+R++ +     +  D + QVF   +  V    I+ G + +          P     +E 
Sbjct: 572 ISRVNRKKGSSNYPEDLVDQVFEMRIGDVGEGVIDQGANKIFIATLKDIKTPGQVNEKEL 631

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            +F ++ T      +   ++++L ++Y V ++  L++
Sbjct: 632 KEFQAHFTSSAISSIRRQLLSHLTNKYGVKINKKLLE 668


>gi|302187980|ref|ZP_07264653.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           syringae 642]
          Length = 627

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 99/643 (15%), Positives = 233/643 (36%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +       +SQ++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             ++   R   + R    + L      +    ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--TSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+++ +++LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNEEQAKAKIEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     + G    ++ + + D +  +++++L K    +  +  
Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVYDPAFEEALYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     +F  +K  + N ++     +K  E  K+LE+     + + + 
Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        +     ++   F  +  +  +  +T+ L   +
Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGANSNTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   LE V + ++        +    +K   L+    ++GK      K
Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKTKGEALLAGL-RDGK-IPLAAK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFK-- 575
             G        + R     +      +  +F  P    K  P       +  S+V+ +  
Sbjct: 526 QEGRDWKMMEAVTRS---QEGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIVRLN 582

Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L     +    +  A L+S+  + 
Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASREGQQDFAAYRAQLESKAKIE 625


>gi|213968838|ref|ZP_03396979.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
           tomato T1]
 gi|301384116|ref|ZP_07232534.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           tomato Max13]
 gi|302059522|ref|ZP_07251063.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           tomato K40]
 gi|302135027|ref|ZP_07261017.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926441|gb|EEB59995.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
           tomato T1]
          Length = 627

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 103/643 (16%), Positives = 234/643 (36%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60

Query: 61  KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                     ++Q++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +D   R   + R    + L     P+    ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--PSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+ + +++LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVTVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDDQAKAKVEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     S G    F+ + + D +  +++++L K    +  +  
Sbjct: 296 QRLAKGEDFAALAKEFSQDPGSSSKGGDLGFAGKGVYDPAFEEALYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     +F  +K+ ++N ++     +K  E  K+LE+     + + + 
Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLEDSAFESSDLTQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        +     ++   F  +  +  S  +T+ L   +
Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGSNSNTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   LE V + ++             +K   L+    ++GK      K
Sbjct: 468 VLVVRSKEHLQPQQLPLESVASSIRAQLVKEHATAAAKTKGEALLAGL-RDGK-IPLAAK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574
             G    +   ++R     +      +  +F  P  + K  P        +G   +V   
Sbjct: 526 QDGRDWKSMEAVSRS---QEGVDPQVLQALFRMPKPVAKDKPEFASITAADGSFVIVRLN 582

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L     +    +  A L+S+  + 
Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625


>gi|28870877|ref|NP_793496.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854126|gb|AAO57191.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331019234|gb|EGH99290.1| periplasmic folding chaperone [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 627

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 103/643 (16%), Positives = 234/643 (36%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60

Query: 61  KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                     ++Q++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +D   R   + R    + L     P+    ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--PSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+ + +++LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVTVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDDQAKAKVEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     S G    F+ + + D +  +++++L K    +  +  
Sbjct: 296 QRLAKGEDFAALAKEFSQDPGSSSKGGDLGFAGKGVYDPAFEEALYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     +F  +K+ ++N ++     +K  E  K+LE+     + + + 
Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLEDSAFESSDLTQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        +     ++   F  +  +  S  +T+ L   +
Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGSNSNTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   LE V + ++             +K   L+    ++GK      K
Sbjct: 468 VLVVRSKEHLQPQQLPLESVASSIRAQLVKEHATAAAKTKGEALLAGL-RDGK-IPLAAK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574
             G    +   ++R     +      +  +F  P  + K  P        +G   +V   
Sbjct: 526 QDGRDWKSMEAVSRS---QEGVDPQVLQALFRMPKPVAKEKPEFASITAADGSFVIVRLN 582

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L     +    +  A L+S+  + 
Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625


>gi|330963316|gb|EGH63576.1| periplasmic folding chaperone [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 627

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 104/643 (16%), Positives = 234/643 (36%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60

Query: 61  KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                     ++Q++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +D   R   + R    + L     P+    ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--PSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+ + +D+LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVTVKDDDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKVEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     S G    F+ + + D +  +++++L K    +  +  
Sbjct: 296 QRLAKGESFAALAKEFSQDPGSSSKGGDLGFAGKGVYDPAFEEALYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     +F  +K+ ++N ++     +K  E  K+LE+     + + + 
Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLEDSAFESSDLTQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        +     ++   F  +  +  S  +T+ L   +
Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGSNSNTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   LE V + ++             +K   L+    ++GK      K
Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRAQLVKEHATAAAKTKGEALLAGL-RDGK-IPLAAK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574
             G    +   ++R     +      +  +F  P  + K  P        +G   +V   
Sbjct: 526 QDGRDWKSMEAVSRS---QEGVDPQVLQTLFRMPKPVAKDKPEFASITAADGSFVIVRLN 582

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L     +    +  A L+S+  + 
Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625


>gi|58697113|ref|ZP_00372552.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225630407|ref|YP_002727198.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia sp. wRi]
 gi|58536595|gb|EAL59930.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592388|gb|ACN95407.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia sp. wRi]
          Length = 599

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 129/624 (20%), Positives = 275/624 (44%), Gaps = 35/624 (5%)

Query: 8   ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
             + +  K+ +V+L    +  G+ + L        V  VG++ +    + + ++     I
Sbjct: 2   NVKNFFTKVTVVLLACLLIFVGVGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQI 61

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
           S   G   + E+ + +  D  +L+ L+    L     ++GL      +   I  +  F  
Sbjct: 62  S---GSDASREQVKKLKYD--LLNALIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQN 116

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKR 184
              +F  + F   L    + EKEYI    K+L     +        P      + +Q   
Sbjct: 117 DKGEFDKNKFHETLNDLHMTEKEYIAKLEKILPAMMFMTSLFKDNYPVTFGEKIDEQIYN 176

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
             ++ R VD + +    V  I +P +  L   +E+ K ++  PEY+   YI  +    E 
Sbjct: 177 SRYQTRVVDIVKITEDAVTNIPEPDDQTLLDLYERNKSHFYYPEYRTAQYISLEQKYFED 236

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303
           +I+IS++E+    E+ + +    + R +  ++F  ++EA+ A ++ ++GK  F Q+ EE 
Sbjct: 237 QIKISDEEVDGIIEQQELR----DQRDIFNIIFSTKEEAETARRAFEEGKTSFEQIVEEF 292

Query: 304 GKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           GK+ L +  + + +K+++P+  + + +F+L K G+ + V+  SFG+ I  V +       
Sbjct: 293 GKAELEETRVNNITKDFLPE-DMREKVFAL-KVGEVSEVLASSFGWHIIKVESAHQISDE 350

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
              ++KKDI + +   K+ E+V +   ++   +  G++++EI     +    +  VD +G
Sbjct: 351 DLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSAIEEILSEYNLPIQTIGPVDASG 410

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
           KD  G  V        L+  +F ++    K +   + D + + V+I + +P + +  EE 
Sbjct: 411 KDQSGNNVGD---SSDLISFIFSREKD-QKGYFKGVGD-AVVSVKIIDIVPPKSQSFEEG 465

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
                + W++    E +     +  ++  ++     D  K  G  L+   Q++R +   +
Sbjct: 466 RASAVELWQSEFIKERMFKIGQEFAVQLREK----TDWEKIQGVELVEDQQMHRNE---Q 518

Query: 543 FFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
            + +  + ++F+         PI+  N +   V K  +S  G +   D     +      
Sbjct: 519 NYPFSFVEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNMLDTGKRVMI----- 573

Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQ 624
            L + +I+YL+S+Y V V+  ++ 
Sbjct: 574 SLKEQLISYLESKYKVEVNHAILD 597


>gi|320325365|gb|EFW81432.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 627

 Score =  343 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 102/643 (15%), Positives = 228/643 (35%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                     ++Q++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +D   R   + R    + L           ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--TTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+++ +++LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     S G    ++ + + D +  D++++L K    +  +  
Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     +F  +K  +   ++     +K  E  K+LE+     + + + 
Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLEDSSFESSDLSQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        I     ++   F  +  +  S  +T+ L   +
Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GITANRAVIQAAFSPEVLEEGSNSNTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   LE V + ++             +K   L+    ++GK      K
Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRTQLVKEHATAAAKAKGEALLAGL-RDGK-IPLAAK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574
             G    +   + R     +      +  +F  P    K  P        +G   +V   
Sbjct: 526 QDGRDWKSMEAVTRS---QEGVDPQVLQTLFRMPKPDGKGKPEFASITAADGSFVIVRLN 582

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L     +    +  A L+S+  + 
Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625


>gi|291279447|ref|YP_003496282.1| peptidyl-prolyl cis-trans isomerse D [Deferribacter desulfuricans
           SSM1]
 gi|290754149|dbj|BAI80526.1| peptidyl-prolyl cis-trans isomerse D [Deferribacter desulfuricans
           SSM1]
          Length = 626

 Score =  343 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 117/646 (18%), Positives = 255/646 (39%), Gaps = 45/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVV---LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML + R   +     ++LV+   +   FL+WG+          +  + V   ++ F+ + 
Sbjct: 1   MLRMFRNQKKILAFFLWLVIAAFIGTIFLVWGVGGN--RGRQKNYAIKVNDFEISFNEYQ 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + +    +   +G  + +    ++ ++K++ D+++    L      +G+      V+ 
Sbjct: 59  QEYDKFSNTLKSLLGGEIPN----TININKQVTDSIIEKYLLLDQANKLGVFVSDVEVFN 114

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI   P F   + +F    +V  L   G+    +       L       +    +  +  
Sbjct: 115 EIKNIPSFQ-TNGQFDAKRYVEILRLNGLTPASFERSIKADLLVQKTKNLITQSVSVNEN 173

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +     +  +   + YI LN+         ++  L  +FEK K++YR PE  ++ YI  
Sbjct: 174 EIKNEYIYRNKTAKISYIKLNSEKFKKDVTYNDEELKAYFEKNKEDYRVPEKIKLKYIKI 233

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADE 285
           D  +  K+I++S++E++  Y ++ +++   E    + ++   +             + + 
Sbjct: 234 DPKDFNKEIKVSDEEIEKYYLQHTDEFIEKEKVAAKHILIRVKDWNNKKEVAEAKKKIEN 293

Query: 286 AFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             Q +KKG KF  LA++        +   LG F+K  +      D +F L K GD + ++
Sbjct: 294 ILQKIKKGAKFEDLAKKYSDDPTAKNGGDLGYFTKGQMIK-EFEDVVFKL-KPGDISDIV 351

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
              FGY I  V   KP   ++  E K  I  +++  K     KE    +   +   +++ 
Sbjct: 352 KTKFGYHIIKVYGHKPEKKLTLDEAKPLIIKKLKTLKKDSYFKEYVLDIYRDILKASNIT 411

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
             +   K + +     D+         +      +  LF++   +        +   +G 
Sbjct: 412 AYTLEHKDIPVY--ETDYFSMFDNIPPIGNDLKLKTKLFKLETSEV-----TNIIDINGV 464

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
               ++ E   +   K E+V  +V  D+   K+ E     A  L+ +Y++     + I  
Sbjct: 465 KYIFELIEKKKSYIPKFEDVKKEVINDYINDKSVELAKDNALSLIKKYNE----LQKIAD 520

Query: 523 NLGASLLTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
           +   S+ TT    R+D   +     +   ++F+    +++  P   G +  + +V N K 
Sbjct: 521 SKKLSITTTPDFKRIDPIPDIGTNEELSKKIFNKGKGLLET-PFVVGNNIFIIEVNNIKY 579

Query: 582 GP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                    EK +  SY+  +   + L+S I  LK+   + V+ ++
Sbjct: 580 PDFSKITEDEKKEIESYILSIKQDEALNSYIEKLKNNAKIEVNPSI 625


>gi|257483811|ref|ZP_05637852.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|320327650|gb|EFW83658.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330985643|gb|EGH83746.1| periplasmic folding chaperone [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331012683|gb|EGH92739.1| periplasmic folding chaperone [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 627

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 102/643 (15%), Positives = 228/643 (35%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                     ++Q++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +D   R   + R    + L           ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--TTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+++ +++LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     S G    ++ + + D +  D++++L K    +  +  
Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     +F  +K  +   ++     +K  E  K+LE+     + + + 
Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        I     ++   F  +  +  S  +T+ L   +
Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GITANRAVIQAAFSPEVLEEGSNSNTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   LE V + ++             +K   L+    ++GK      K
Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRTQLVKEHATAAAKAKGEALLAGL-RDGK-IPLAAK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574
             G    +   + R     +      +  +F  P    K  P        +G   +V   
Sbjct: 526 QDGRDWKSMEAVTRS---QEGVDPQVLQTLFRMPKPDGKGKPEFASITAADGSFVIVRLN 582

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L     +    +  A L+S+  + 
Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625


>gi|148260238|ref|YP_001234365.1| hypothetical protein Acry_1235 [Acidiphilium cryptum JF-5]
 gi|146401919|gb|ABQ30446.1| hypothetical protein Acry_1235 [Acidiphilium cryptum JF-5]
          Length = 628

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 116/630 (18%), Positives = 234/630 (37%), Gaps = 8/630 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML +IR+    W+ + F VVL   F+ WG+S  +  +  S  + +VG Q +   +   ++
Sbjct: 1   MLSMIRQLLDNWIVRAFFVVLIGVFVFWGVSSVVMGIGASDAIATVGGQPIKIEAVNAAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ L   + +        +        + L   +  A ++     +G+ A    +  ++ 
Sbjct: 61  QRTLNAYATQNSGR-EPSKGERRLFADQALGTAIDRAAMELEARRMGVVAPPAAIRQQVF 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FHG D KF    F + LA   +    ++      L  + ++     G+     L+D
Sbjct: 120 AIPAFHGPDGKFDKATFNAVLANHNLTPAAFMAEIASGLKTSQIIDAVTAGVSAPAPLVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q   +  + R+V +  L          P+  VL +++  +   +  P  +    ++    
Sbjct: 180 QIFAYAAQERTVQFAQLPFAAANPPPAPAETVLRRYWRDHPGRFSTPALRDADVVVLSPA 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
              +   +S  E+ A+Y++ K K+     RTVE +   + K A     + K G  +  + 
Sbjct: 240 LIARGEAVSQAEIAAQYQQEKAKFAQTPTRTVEIITAEDAKSAAALANAWKGGADWAAMQ 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +    + +   + + +K      +        A  G+ +  + G+ G  +  V+      
Sbjct: 300 KAAAAATATAIVMTDAKPSDLPSATLAKAAFAATPGEVSAPVKGALGTYVFKVTKAVAGG 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                 V   I  ++++ KA   V      L++ LA  T++ ++     +    +  VD 
Sbjct: 360 DKPLSAVADQIRAEIQLRKARNVVDNTLSHLQDALAGSTALGKLPASLHLAKARV-SVDR 418

Query: 421 AGKDVKGKE--VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
            G  V GK   +       Q + +      P +    V+ P  SY  + +   I    + 
Sbjct: 419 EGMTVDGKPAGIPGPAALRQAIVKAIFATAPGNTPQAVSGPGDSYYAIAVHRIIKPALKP 478

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
            ++V  DV  DW   +   +    A +L+    K GK         G ++ T+  + R  
Sbjct: 479 YDKVKADVLADWTGAQVERQEEVAAAKLLTA-VKGGKTLAAAASAAGLTVTTSAPMTR-A 536

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSY-VVFKVTNSKVGPVQE-KDKFISYLTQ 596
              K          FS           + G    VV  +   K G  +    +    L Q
Sbjct: 537 KPAKGVPPQLAQVAFSLKKGAPTMVQTQEGFVVGVVSDIAEPKPGSDKAFHQRVADSLGQ 596

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            M +D+L +  A L+ +  V ++  L+ + 
Sbjct: 597 SMQEDVLQTYAAALRQRDHVKINTKLLNQI 626


>gi|254448800|ref|ZP_05062257.1| peptidyl-prolyl cis-trans isomerase D, putative [gamma
           proteobacterium HTCC5015]
 gi|198261641|gb|EDY85929.1| peptidyl-prolyl cis-trans isomerase D, putative [gamma
           proteobacterium HTCC5015]
          Length = 643

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 120/651 (18%), Positives = 258/651 (39%), Gaps = 37/651 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IR+     VA + +  L +  ++  L D +  + G ++ ++V  + V    +    
Sbjct: 1   MLLAIREKVTGAVALVIIAALGLFMVVPMLYDYVAGM-GDNSAITVDGESVSIQQYNQRL 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            Q    ++Q  G  +       + L K+  D  +     +Q   + G       +   I 
Sbjct: 60  SQNRQRLTQAFGGELPESFGDQL-LAKRTTDQFIQQLLQEQATLNDGYAISDEDLVRVIQ 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P F   D +F  + +  +L   G +   Y    TK   +             +   L+
Sbjct: 119 EAPQFQ-TDGQFDPEAYKRQLRSIGYSPALYEQTMTKRFVQGQFQEGITQTAFVAPGQLE 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q      + R ++YI  +     +  + S+A +  +FE +++ +  PE   + Y+  +  
Sbjct: 178 QMAALMHQERDIEYIAFSGEAFRSDIELSDAEIEAYFEDHREQFMHPEKVSVEYVAINFE 237

Query: 241 EKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADE------------A 286
           + +  +E++ +E+Q EY+   +  +Y S E R+   ++F    +ADE             
Sbjct: 238 DYKNGLEVTEEEVQQEYQAGVDSGRYTSQEERSASHILFAFDSDADEDARAAVRSEAEQV 297

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
              + +G  F  LA+E          G      ++ +       ++F+L ++G  + ++ 
Sbjct: 298 LTQINEGGDFSALAKEHSDDPGSAEQGGSLGVVQKGVMVPEFEQAVFNLPEEGAVSDLVE 357

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMD 402
             FGY I  +    P+    F E+   I  ++   KA  +   D   +       + S++
Sbjct: 358 SQFGYHIIRLDEYTPAEAQPFDEISAKIRQELLDNKARLRYDSDIDEMSNLAFESSGSLE 417

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
            +++     S++L   D+  +   G+ +A+ P   +  F+    DD  +   T+ L +G 
Sbjct: 418 PVAQAL---SLELQSSDWFTR-TSGEGIASDPVVREAAFKTDILDDGYNSG-TLDLSNGD 472

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + +++KE  P  ++ LEE  +DV+    T   AE++S+  +Q    + + G++   I +
Sbjct: 473 VVVLRVKEHEPRHEKTLEEARSDVESALMTKTVAEQLSAAQSQAAEAW-RSGESGEAIAE 531

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE---NGLSYVVFKVTNS 579
            LG    T   + R + E        I   F   +   +        +G    V K+ + 
Sbjct: 532 RLGGEFNTALGVTRKNPEQ--LPRGLIQVTFKMAMGEAEASVANANLSGEDRAVVKLLDK 589

Query: 580 KVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           + G        E+++    L          +V+  L+ +  + ++ +LI +
Sbjct: 590 RPGQWEQLTQSEQEQIKQQLLASKGGMDYAAVLNQLREEADIDINQSLIDQ 640


>gi|89054374|ref|YP_509825.1| putative peptidyl-prolyl cis-trans isomerse D [Jannaschia sp. CCS1]
 gi|88863923|gb|ABD54800.1| putative peptidyl-prolyl cis-trans isomerase D [Jannaschia sp.
           CCS1]
          Length = 617

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 124/625 (19%), Positives = 253/625 (40%), Gaps = 28/625 (4%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           K        I + +LFV               G+S V SVG  ++    +  +   E+  
Sbjct: 7   KKVSNVFVWILMGLLFVALA---GFGIGSFSGGASQVGSVGDVEITADDYFRALNNEINA 63

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
            S      V     R+ G+D +IL  L + A L      +G+      V  +IA+   F 
Sbjct: 64  QSADERRAVPFAEIRARGIDAQILAGLTARAALSHEAGAMGISVGDAEVAAQIAQVQAFQ 123

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
                F  + +   L ++G   +E+ +   + ++R  +    +GG+ P+ +  +    + 
Sbjct: 124 NTSGNFDRNTYEFVLQQQGATPREFEEDTREDVARALLQTAVIGGLTPNEIFAETITAYQ 183

Query: 187 FENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
            E R    + +    +   IA+P++A L  +++++ + +  PE +RI+Y           
Sbjct: 184 SETRDFTRLEVREGDLTVPIAEPTDAELAAYYDEFPERFTRPEARRITYAWIIPSAIMDD 243

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD-EAFQSLKKGKKFIQLAEEQG 304
           +EI  D L+  Y+   ++Y  PE R +E+LVF +  E D        +   F  L  ++ 
Sbjct: 244 VEIDEDALRELYDDRIDEYVQPERRLLERLVFNSDAEVDAALAAIEAEETDFDTLVADRD 303

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            +L D+ LG  + + + D + A       +  +    +    G  +  V+ +  S  V F
Sbjct: 304 LTLEDVDLGEIAADDLSDAAAAII--FADEDSELLGPVPSPLGPALFRVNAVLQSSEVPF 361

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
           +E + D++ ++    A  ++ +  + +++ LA G +++E+S       + L  +D+    
Sbjct: 362 EEARDDLSAELAQEGARRQIDDMREGIDDLLASGATLEELSD---GTVMTLGTLDYTPAS 418

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
            +G  +AA          V   D P      + L DG    +++ E +P     L+E+  
Sbjct: 419 EEG--IAAYDNFRDAAVSVQDSDFP----ELLELSDGGLFALRLDEVVPPTLPPLDEIEA 472

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
           +V + W+     + V+ +A+QLV + ++ G    D+G      L+    +          
Sbjct: 473 EVAEAWQATALRDAVAERASQLVAQLAQ-GATLEDLGDTAEERLIRRQDLL------PDL 525

Query: 545 GYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK--- 600
               ++QVF       V   P  +    V     NS V    +    +S + Q + +   
Sbjct: 526 PATTVAQVFQLEGTGDVVMIPGADAAHIVRLDTINSGVRDAPDTSVILSIMNQSIAQSMA 585

Query: 601 -DLLDSVIAYLKSQYSVTVHDNLIQ 624
            D+ ++    L++   +T +  +I 
Sbjct: 586 VDIFEAYGQALQANAGITTNQGVIN 610


>gi|329113481|ref|ZP_08242262.1| Peptidyl-prolyl cis-trans isomerase D [Acetobacter pomorum DM001]
 gi|326697306|gb|EGE48966.1| Peptidyl-prolyl cis-trans isomerase D [Acetobacter pomorum DM001]
          Length = 639

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 125/634 (19%), Positives = 256/634 (40%), Gaps = 21/634 (3%)

Query: 1   MLEIIRK-ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFIN 58
           M+  +R+    +W+ ++  +V+F+ F+ WG+ D +  +      V  VG+Q+V       
Sbjct: 1   MISYLRRVFVESWLGRVTAIVIFLAFVGWGIGDVMGYMGEETDVVAKVGQQQVSSDDLAT 60

Query: 59  SWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + + EL  I++++G    S    A    +  +IL  L+  A L    + + +      V 
Sbjct: 61  ALQSELPTIARQMGVSDPSHIPLAMQRQVAYQILHRLIGQAELLNTAQKLKVAVPDSAVR 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            E+   P F G + +F    F  +L   G+ E+ ++D     L+   ++         S+
Sbjct: 121 DEVFSLPYFKGANGQFDRASFNQKLHDRGLTEQRFLDMVRNDLTTRTILQPLAQAGSVSD 180

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +L +   +  + R VD++ +     P    P +AVL +++  +   +R PE +    ++
Sbjct: 181 TMLQRFLTYGAKTRVVDFVSIPFAAQPTPKTPDDAVLQRYYNNHPWMFRTPELRHAKIVV 240

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                    I +   +++  Y++ K +Y  PE R ++ +   +Q +A     + K G  +
Sbjct: 241 LSPQTVADSITMDEADIKRIYDEQKSRYNVPETRDIQLITLQDQAQATAIANAWKVGGNW 300

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             + +   K  + + + +     IP  +L  ++F   + G  +  +    G+ +  V+ I
Sbjct: 301 QAI-QNSAKDAAAVEMPNARPSTIPSTTLRQAVFHAPE-GQVSDPLKTEGGWAVFRVTKI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI--D 414
               T  +++ KKDI +Q R   A     E  ++L++ LA G  +D I      V+    
Sbjct: 359 TAPHTTPYEDAKKDILSQYRAAVAPSVAGERKRKLQDALA-GQGLDAIPADLGAVAAAGT 417

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           L               A+   +E ++ ++F +  P ++   V  PD S   V++  + PA
Sbjct: 418 LDAQGMTADKEPAPLPASGKLREAIIHQIFTQ-KPGARATLVDGPDNSSFAVEVDTATPA 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK-NLGASLLTTNQ 533
             R   +  TDV   W+        + +A  L L      KN + +G  N   + LT + 
Sbjct: 477 APRTFAQAQTDVLAAWQDEARKHAANEQATTLYLAA----KNKQALGTVNASGAQLTRDA 532

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDK 589
                  NK      +  +        +    E+   ++V  VT     +   P     +
Sbjct: 533 AFSFAKPNKNIPAALMDYLPRMQPG--QAVMTEDDGHFLVAVVTKLFVPNPPAPADGVQR 590

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
               L Q  + DL+ S +  L  +    +++  +
Sbjct: 591 LKDSLAQADSDDLVASYVEALSKRTPPHINERAV 624


>gi|169796089|ref|YP_001713882.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter baumannii AYE]
 gi|213157178|ref|YP_002319223.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           AB0057]
 gi|215483544|ref|YP_002325763.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301347497|ref|ZP_07228238.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB056]
 gi|301511279|ref|ZP_07236516.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB058]
 gi|169149016|emb|CAM86893.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter baumannii AYE]
 gi|213056338|gb|ACJ41240.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           AB0057]
 gi|213987782|gb|ACJ58081.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii
           AB307-0294]
          Length = 621

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 110/635 (17%), Positives = 222/635 (34%), Gaps = 33/635 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ LV+   P  + G+       + +    +V  Q +         +
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           +        +    +        +  K LD LVS   L Q  E +G+     ++   +A+
Sbjct: 61  RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P    ++ +FS  ++ + L   G+  +  I    +  +   +   F      S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +      A    SN   T ++ K+++ ++ P    + Y++     
Sbjct: 178 IANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------G 293
             K    ++ EL+  Y K  E       R V+ ++       D A Q L K        G
Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F Q A +  +  +  + G   + Y P V   +   ++ SL K G  +  +   +GY I
Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHI 356

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
              +  + +   SF+  K  +  ++   K +    +    L E +    S+D + ++ K 
Sbjct: 357 IE-AETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKG 415

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             I+                 + P  +  LF    K+   +    + L +G  +WV++++
Sbjct: 416 TKIE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
              A  + L + + +VK      K  +   +K   ++ E+  +      +      +  +
Sbjct: 473 YHAAGVKPLAQAMNEVKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFES 530

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582
                R    ++          FS P        V    + N L  V     NS      
Sbjct: 531 AGVFTR----SQGLKRAIERAAFSVPAPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAM 586

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           P  +  +      Q   + +L+    YLKS   + 
Sbjct: 587 PADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621


>gi|54297774|ref|YP_124143.1| hypothetical protein lpp1825 [Legionella pneumophila str. Paris]
 gi|53751559|emb|CAH12977.1| hypothetical protein lpp1825 [Legionella pneumophila str. Paris]
          Length = 624

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 109/639 (17%), Positives = 250/639 (39%), Gaps = 41/639 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+     S   S   V V  + +   +F  ++
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +       Q +  +     A    L  ++L+ +++     Q     G E    +    I 
Sbjct: 61  R--RTRAQQDLPQMTA---ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F  +D  FS   +   L+      + + +   + +        F+G     +  + 
Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIK 174

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  R Y + R  DY+ + +      A  S   +  ++ ++   +   E   + Y+L  +H
Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLSMH 234

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288
           + + +I+IS D++++ YE+NK  Y +P    V  ++F              +++ADE + 
Sbjct: 235 DIKSQIKISPDQIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYS 294

Query: 289 SLKKG-KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            LKK  ++F +    +    LS  + G              ++ +L + G  +  +   +
Sbjct: 295 DLKKHPEQFDKYVASKSDDKLSITNKGILPWITGGQNEYGRALSNLTRPGQISIPVQTKY 354

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           GY I  +   KP  T S QEV+  + +Q+    A  K  +  ++L +      + D +  
Sbjct: 355 GYEIFKLIAYKPVTTKSLQEVENIMKDQLTSDMAQAKYAQVLEQLTDLSYQ--TPDSLDP 412

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYM 464
               + + +   +   +D   + +      +Q++   F  D  +  +    + + + S +
Sbjct: 413 VLDSLQLKIQHTEPFSRDGGKQPITK---NKQVIHAAFSTDVLELGNNSEPIQIDNDSVI 469

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK--EGKNFRDIGK 522
            +++K+ IP+R++ L+EV   +KK        +   +KA ++        E K  +++  
Sbjct: 470 VLRVKKHIPSREQTLDEVRDQIKKIL----AKQYGDAKAKEIGSSLLHPVEDKQQQELIA 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
           N      +    +R  ++      D     F+      +   I +   YVV K+     G
Sbjct: 526 NNQFEWHSVENASRDSDKANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRINDG 582

Query: 583 PV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
            +     +++D  I  +         D  +  L    ++
Sbjct: 583 KLSSLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHANI 621


>gi|301060821|ref|ZP_07201635.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
 gi|300445070|gb|EFK09021.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
          Length = 635

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 112/639 (17%), Positives = 256/639 (40%), Gaps = 36/639 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L ++RK +++W+ K  + ++ + F+ +      F+   +  V  V  + +    +  +++
Sbjct: 3   LSLMRKHAKSWLIKALIAIIAIVFVFY--FGYSFTSDKAMKVAYVNGELINGPEYEKAYR 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
             L     +   + N    +   L ++ LD+L++   + Q   ++GL      +   I  
Sbjct: 61  DMLMSFQARYKDMWNDNLLKIFNLKQRALDSLITQRLMSQAATELGLAVTEEEIQKAIMT 120

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P F   + +F    + + L+   +  +++    T  L    +       +  ++  + +
Sbjct: 121 YPAFQ-INGQFDMRRYQALLSANHMKPEDFEASITSELLDQKLKQFLFAFLNITDQEILE 179

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSN-AVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              F  E   + ++              + A L ++FEK K++YR PE   + Y+  D  
Sbjct: 180 YYTFANEKVKIGFVEFKPEDFKKSVTIEDKAKLKEYFEKNKESYRVPEKIAVRYLEIDPK 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQ 288
           + E ++E++  E+Q+ YE N ++Y  P+      ++F              +K+A++  +
Sbjct: 240 DFEGEVEVTEKEIQSYYEYNSDRYSQPKQVKARHILFKFNKDDSEEVKNTVKKKAEKVLE 299

Query: 289 SLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
             +KG+ F  LA++  +         LG F    + +    ++ F+L KKG+ + ++   
Sbjct: 300 KARKGEDFASLAKKYSEGPTKSKGGDLGYFKTGEM-EKPFEEAAFAL-KKGEISDLVQTR 357

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           FGY I  V +IK +     + VK +I   +     +E   E    L + +     ++   
Sbjct: 358 FGYHIILVEDIKEAGIKPLENVKGEIRATLTGNLTAELAHEKGLTLLDQMPYEVDLNAYG 417

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
           ++  + +             K   +  I   E++   +FG D        V L  G +  
Sbjct: 418 KQNGLSAKTSEPFS------KNAPIPGIEGSERVTATLFGLDKD-EASSLVELG-GKFYI 469

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
            Q  ES  +   +L+ V   V++++ + +      S A + + E  K+GK++  + K   
Sbjct: 470 FQFAESKASYLPELKTVKKAVEENFISQEARVSAESAATKYLNEL-KDGKSWETMAKEHN 528

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQ-VFS-GPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
             +  TN   R +          +++  F  G        P  N  +  + +   ++   
Sbjct: 529 RKIQQTNFFTRREAIPDIGNAPALNEMAFKLGKDNRYTQKPFVNDKAVFIIRWEGNEGID 588

Query: 584 V----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                +EK  + + L Q  ++ + ++ I  L+ +  + +
Sbjct: 589 ETKFKEEKGTYRNSLAQTKHQRIFENWIQNLRKKAVIEI 627


>gi|269958860|ref|YP_003328649.1| putative peptidyl-prolyl cis-trans isomerase [Anaplasma centrale
           str. Israel]
 gi|269848691|gb|ACZ49335.1| putative peptidyl-prolyl cis-trans isomerase [Anaplasma centrale
           str. Israel]
          Length = 632

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 126/635 (19%), Positives = 260/635 (40%), Gaps = 28/635 (4%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQELGMI 67
           R       L  +   F+       L     +S   V  VG   +    +  +++ EL  I
Sbjct: 4   RNVFVGAVLAAVLCAFVFVTFGSVLPFGDTASDRCVAKVGSNCLSLREYSTAYQGELAYI 63

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
              +   ++ +  R  G+ +  L+ ++    L++F  ++GL      +   I   P+F  
Sbjct: 64  ESLVHQKLSEDDIRRFGVKEMTLNRMIDDMVLEKFARELGLRVSSKSIRDLIGDMPMFQD 123

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV--GGMRPS---NLLLDQA 182
           K  K     F   L+  G+ E  YI      L    +        G   S   +      
Sbjct: 124 KSGKLDERRFKDLLSDAGMTEASYIGKVRGSLPAFMLSECIFPRSGAVYSQYYDGFAQDV 183

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK--YKDNYRAPEYKRISYILFDVH 240
            R   ++R VD + ++   V     P++  L   + +         PEY+   Y++    
Sbjct: 184 LRGIMQSRIVDVVEISPSAVENTPTPTDNDLEAMYSEGTRNGELVMPEYRSAKYMIVSED 243

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +  +++  S+DE+++E + ++      + R V  LVF ++ EAD A Q+LK GK F  + 
Sbjct: 244 DALEEVTASDDEVESEIKNSELH----DQRDVLNLVFSSESEADAASQALKGGKTFEAVV 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           ++ G ++  I+L + +KE +P V +  ++F L   G+ + V     G+ I  + N  P  
Sbjct: 300 KDAGTTVEAITLKNVTKELLP-VEVRSAVFGL-NDGEVSGVFRSVVGWHIMKILNRHPIS 357

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSID-LPLV 418
               +++K+ +A  ++  KA E      ++  E ++ G  S  E+    +  ++  L   
Sbjct: 358 KEDLKKLKERVAASIKRQKARELFSAGIRKANEMISHGAESFSEVESVFRKPTMGVLQNF 417

Query: 419 DFAGKDVKGK-----EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
           D  G+D+ GK     E ++ P   + L  +          H V++ + +Y  V + +  P
Sbjct: 418 DSNGQDLTGKGHTYAEESSFPGIVEALPALAFSSQVGKPSHFVSIGN-AYFSVIVTDVTP 476

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
           AR R  +E    +   WK    A E+   A+ LV +  + G++   +   +        +
Sbjct: 477 ARARTFDESKHLLLDRWKNAFVAGEMRKIASNLVTKL-RAGESLGKLAGVVTKKGEDIGR 535

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV-VFKVTNSKVGP---VQEKDK 589
           +++       +  D ++QVF+  V  V     ++ ++ + +  +   K       +E  +
Sbjct: 536 VSKTKVGGTNYPEDLVNQVFNMRVGDVGEGVTDHSMNKIFIATLKEIKTPSQVNEKELKE 595

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           F ++        +   ++ +L  +Y V V+  L++
Sbjct: 596 FQAHFVGSAISSIRRQLLNHLTDKYRVKVNRKLLE 630


>gi|332851740|ref|ZP_08433665.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150]
 gi|332865885|ref|ZP_08436665.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113]
 gi|332729747|gb|EGJ61082.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150]
 gi|332734935|gb|EGJ66021.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113]
          Length = 621

 Score =  343 bits (879), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 109/635 (17%), Positives = 221/635 (34%), Gaps = 33/635 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ LV+   P  + G+       + +    +V  Q +         +
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           +        +    +        +  K LD LVS   L Q  E +G+     ++   +A+
Sbjct: 61  RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P    ++ +FS  ++ + L   G+  +  I    +  +   +   F      S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +           SN   T ++ K+++ ++ P    + Y++     
Sbjct: 178 IANLQTEQRTLHLASIKLDPYKTGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------G 293
             K    ++ EL+  Y K  E       R V+ ++       D A Q L K        G
Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F Q A +  +  +  + G   + Y P V   +   ++ SL K G  +  +   +GY I
Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHI 356

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
              +  + +   SF+  K  +  ++   K +    +    L E +    S+D + ++ K 
Sbjct: 357 IE-AETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKG 415

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             I+                 + P  +  LF    K+   +    + L +G  +WV++++
Sbjct: 416 TKIE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
              A  + L + + +VK      K  +   +K   ++ E+  +      +      +  +
Sbjct: 473 YHAAGVKPLTQAMNEVKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFES 530

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582
                R    ++          FS P        V    + N L  V     NS      
Sbjct: 531 AGVFTR----SQGLKRAIERAAFSVPTPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAM 586

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           P  +  +      Q   + +L+    YLKS   + 
Sbjct: 587 PADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621


>gi|329850639|ref|ZP_08265484.1| rotamase family protein [Asticcacaulis biprosthecum C19]
 gi|328840954|gb|EGF90525.1| rotamase family protein [Asticcacaulis biprosthecum C19]
          Length = 645

 Score =  343 bits (879), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 117/637 (18%), Positives = 260/637 (40%), Gaps = 16/637 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+ I+R  ++TW+ K  ++++   F+  G   + FS S S+ V+  G  KV  + F  + 
Sbjct: 1   MISILRDFTKTWIFKGLMILIAASFIGVG-GASYFSGSNSTDVIVAGNVKVTAAEFKANV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                    + G  + +E+  +  +  ++L  L        +++ +G+      +  E+A
Sbjct: 60  DSMKRYYETQ-GQTITNEQLIAENIPGRLLAQLTDRKATIAWLDRLGVRPSSKLILAEVA 118

Query: 121 RSPLFHG-KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
           + PLF      +F  D +  +LA   + +K +     + ++    +     G+    +  
Sbjct: 119 KIPLFFNSVTGRFDMDTYRQQLASRDMTDKMFEADLREQIAEQQYISSAQAGLEAPRVFA 178

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                F  ++R      L+ ++V    +P+ A +  +++     +  PE +  S I F V
Sbjct: 179 ATDAAFGLQSRDASMFFLSPQNVTMPGEPTQADIETFYKANLQRFTLPESRAASVITFSV 238

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               K + +S+++L+  YE  +    +PE+RT  Q+  P+   A++   +LK G+   + 
Sbjct: 239 VNYAKSVSVSDEDLRQLYESRRASLATPEVRTFVQVRAPDMAAANKVSAALKAGRSAEEA 298

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           A+     +   SL    +  + D  +A++ F + + G+ +  + G+ G  +  +  IK  
Sbjct: 299 AKANKGEVISYSL--RPQTAVADDKIAEAAFKM-QTGEISAPVQGTLGISVIKMGEIKIG 355

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
              SF+  +  +  ++R  +A+EK+ E      + LA G   D  +RR  +    L  + 
Sbjct: 356 SAPSFESARAQLDEELRRQRATEKLNEATNAFADALAKGEEFDAAARRLNLTVAPLEPIT 415

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
             G    G   +       L+  +F      S    + L +G Y  +++    P+    L
Sbjct: 416 ADGMGRSGTNYSTY---GALVKGIFDLPQVGSVSEVLPLGEGEYFALKLTGLQPSGAPPL 472

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            +V  ++   W+  K AE ++++A++ +   +K G+    +  +  A + +   I     
Sbjct: 473 AQVQAELAVLWRREKAAETINAEADKAMARLAK-GETLAAVAASYKAEVRSQKAITLQTA 531

Query: 540 ENKFFGYDGISQVFSGPVE--MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
           +         ++VFS       V   P++   +  + ++     G   + +   +     
Sbjct: 532 QQMQMPQAVAARVFSSKAGETFVAEMPVQGVPAVAIGRLDAIHQGDATQANTMATMSKAQ 591

Query: 598 MNKDLLDSVIAYLKSQYSVTV----HDNLIQRYLDGE 630
            ++ L   +   ++    V V    +     R L  E
Sbjct: 592 ASQALGQDMGTVIQKNARVAVKAKSNTEAAYRALGLE 628


>gi|84515600|ref|ZP_01002962.1| hypothetical protein SKA53_03041 [Loktanella vestfoldensis SKA53]
 gi|84510883|gb|EAQ07338.1| hypothetical protein SKA53_03041 [Loktanella vestfoldensis SKA53]
          Length = 613

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 120/625 (19%), Positives = 258/625 (41%), Gaps = 27/625 (4%)

Query: 6   RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
           +K      A I + V+ V    +G            T+ +VG + +  +++  +  Q++ 
Sbjct: 3   QKKKTKIGAWIIVGVVLVGLAGFGTGGL---TGNIRTLGTVGDKDITVAAYQRNLDQQIR 59

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
            +S + G  ++ ++A++ G+D++ L  +V   TLD     +G+ A    V+  I+    F
Sbjct: 60  ALSAQFGTQISFQQAQAFGIDRQALSQVVQTRTLDNEAARMGISAGDLAVFDRISAIGAF 119

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
                 F+ D +   L + G +E E+     + L+RT +    V G+  +    D   R+
Sbjct: 120 QSA-GGFNRDTYRLVLQQSGQSESEFEAEIREDLARTLLQAAIVSGVPGAAASADALVRY 178

Query: 186 YFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
             E R V  + ++   + A     ++A +T ++E   D +  PE + I+Y        + 
Sbjct: 179 VAEARDVTVLRVSADMLTAPVPGATDADITAFYEANGDEFLLPEAREITYAWMTPAMIQD 238

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQ 303
           ++E+++  ++  Y+     +  PE R VE+L + +   A  A   L  G   F  L  E+
Sbjct: 239 QMEVTDLAIETLYQDRIADFVQPERRLVERLNYADPAAAQLAGGRLASGDATFDALVTER 298

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           G +L+D+ +G   ++ +P  + AD++F+ A  GD       S G  +  V+ +  +  V+
Sbjct: 299 GLTLADVDMGDLGRDELP-ANTADAVFT-ATPGDVVGPFPTSLGAALFRVNAVLNAQEVT 356

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
             E   D+  ++    A   + +D+ R+ + LA G ++++++ R  +V   L  + +   
Sbjct: 357 LDEASDDLRAELAAEAARSVINDDFDRITDLLAGGATLEDLAERTDLV---LGQISWTPD 413

Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
              G  +AA          +     P        L DG    +++    PAR   L+++ 
Sbjct: 414 VTDG--IAAYDNFRAAAEALSEGAFP----ALEVLSDGGVFALRLDSVTPARVPPLQDIR 467

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
            DV   W+     + + ++A ++  +              LG +    + + R       
Sbjct: 468 ADVAARWQLQAQQDALLARAAEIAADL-----TADTDLAALGMTPRVESNLTRRSFVEG- 521

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYV-VFKVTNSKVGPVQEKDKFIS---YLTQMMN 599
                   VF+      +     NG   V +  +T++      +  +  S    +   + 
Sbjct: 522 MPEGFNDAVFALAPGEARVEDAGNGALIVRLDAITDADPTATDQAAQRASISDSIAAGIA 581

Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +DL D+ +  ++    +T++   + 
Sbjct: 582 QDLFDAYVQAVQQATRITINQATVD 606


>gi|298486267|ref|ZP_07004330.1| Peptidyl-prolyl cis-trans isomerase ppiD [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298159274|gb|EFI00332.1| Peptidyl-prolyl cis-trans isomerase ppiD [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 627

 Score =  342 bits (878), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 102/643 (15%), Positives = 227/643 (35%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                     ++Q++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +D   R   + R    + L           ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--TTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+++ +++LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     S G    ++ + + D +  D++++L K    +  +  
Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     +F  +K  +   ++     +K  E  K+LE+     + + + 
Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        I     ++   F  +  +  S  +T+ L   +
Sbjct: 415 AQDLGMKVQTTAPFGREGGE-------GITANRAVIQAAFSPEVLEEGSNSNTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   LE V + ++             +K   L+    ++GK      K
Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRTQLVKEHATAAAKAKGEALLAGL-RDGK-IPLAAK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574
             G    +   + R     +      +  +F  P    K  P        +G   +V   
Sbjct: 526 QDGRDWKSMEAVTRS---QEGVDPQVLQTLFRMPKPDGKGKPEFASITAADGSFVIVRLN 582

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L     +    +  A L+S   + 
Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESNAKIE 625


>gi|289627508|ref|ZP_06460462.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649941|ref|ZP_06481284.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868371|gb|EGH03080.1| periplasmic folding chaperone [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 627

 Score =  342 bits (878), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 103/643 (16%), Positives = 227/643 (35%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                     ++Q++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +D   R   + R    + L           ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--TTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+++ +++LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     S G    ++ + + D +  DS+++L K    +  +  
Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDSLYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     +F  +K  +   ++     +K  E  K+LE+     + + + 
Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        I     ++   F  +  +  S  +T+ L   +
Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GITANRAVIQAAFSPEVLEEGSNSNTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   LE V + ++             +K   L+    ++GK      K
Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRTQLVKEHATAAAKAKGEALLAGL-RDGK-IPLAAK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574
             G    +   + R     +      +  +F  P    K  P        +G   +V   
Sbjct: 526 QDGRDWKSMEAVTRS---QEGVDPQVLQTLFRMPKPDGKGKPEFASITAADGSFVIVRLN 582

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L     +    +  A L+S   + 
Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESNAKIE 625


>gi|110680386|ref|YP_683393.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456502|gb|ABG32707.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter
           denitrificans OCh 114]
          Length = 612

 Score =  342 bits (878), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 117/594 (19%), Positives = 246/594 (41%), Gaps = 26/594 (4%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
                T+ + G + +P   +    +QE+  + Q+   V+  ++A+ +GLD+ +L  LV+ 
Sbjct: 32  SGNIRTIGTAGDKPIPVDDYFRQLQQEIRAVEQQTREVLPFQQAQQMGLDRAVLQRLVAT 91

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
            +LD     +GL      +   I     F G + +F  + +   L + G++E E+     
Sbjct: 92  RSLDHETSQLGLSIGDEELRRRILDISAFQGINGEFDREGYRFALEQTGLSEAEFETQLR 151

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQ 215
           + ++RT V G  +GG+      +D    +  E RS  + +L+   +      P +AVL  
Sbjct: 152 EEVARTIVQGAVLGGIAMPETYVDTLVNYIGEQRSFTWSLLDASDLATPLGAPDDAVLRA 211

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
            ++   D +  PE K+I+Y           +E+  + L+  Y +   ++  PE R VE+L
Sbjct: 212 HYDDNIDVFTLPETKQITYAWLTPDMLLDSVEVDEEALREAYAQQSAEFNQPERRLVERL 271

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            F +++ A +A  +L  G  F  L   +G +L DI LG  S+  + +      +F+ A  
Sbjct: 272 AFLDRQSAQQAADALAAGDSFDDLVRGRGLALEDIDLGDVSEAELGEAGAG--VFA-ADV 328

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G        + G  +  V+ +  +    F++    +  Q+   +AS  V    +  ++ L
Sbjct: 329 GAVVGPFPSTLGPALFRVNAVLAAQETPFEDAIDLLRPQLAADRASRLVAAQAESFDDLL 388

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           A G ++++++    +V   +     +      +E+AA P   Q    V     P      
Sbjct: 389 AAGATLEDLASETDMVVAQIDWTAQST-----EEIAAYPTFRQAAAAV----GPRDFPEI 439

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
            +L DG    +++   +P R    +E+  ++   W+  +TA+ ++ +    V    + G 
Sbjct: 440 ASLDDGGLFALRLDTVLPPRPAPFDEIREEIIAHWEAAETAKRLAEQVAAQVG-LLENGS 498

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
           +F D    LG   +    + R D   +      +  VF+  V   K   IE+  + ++ +
Sbjct: 499 SFAD----LGLDAIVEENLIRSDFVPRT-PPGFLEDVFAMEVG--KAQVIESDAAVILVR 551

Query: 576 VTNSKVGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +               + +     +Q + +D+ +     +  +    ++   +Q
Sbjct: 552 LDAVAPPAADGDAAALRTQLEQQASQQLARDIFEVFANDVVLRADPQINQQALQ 605


>gi|71737764|ref|YP_273939.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558317|gb|AAZ37528.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 627

 Score =  342 bits (878), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 103/643 (16%), Positives = 229/643 (35%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                     ++Q++G   +S       L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDSAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +D   R   + R    + L           ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--TTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+++ +++LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     S G    ++ + + D +  D++++L K    +  +  
Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     +F  +K  +   ++     +K  E  K+LE+     + + + 
Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        I     ++   F  +  +  S  +T+ L   +
Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GITANRAVIQAAFSPEVLEEGSNSNTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   LE V + ++             +K   L+    ++GK      K
Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRTQLVKEHATAAAKAKGEALLAGL-RDGK-IPLAAK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574
             G    +   + R     +      +  +F  P    K  P        +G   +V   
Sbjct: 526 QDGRDWKSMEAVTRS---QEGVDPQVLQTLFRMPKPDGKGKPEFASITAADGSFVIVRLN 582

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L     +    +  A L+S+  + 
Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625


>gi|330878776|gb|EGH12925.1| periplasmic folding chaperone [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 627

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 104/643 (16%), Positives = 235/643 (36%), Gaps = 44/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60

Query: 61  KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                     ++Q++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             +D   R   + R  D+  L     P+    ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVDAFARLEKQTR--DFASLTQPADPSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287
                   K+ + +++LQA Y+K        E R    ++            + + +E  
Sbjct: 238 LKKSSFFDKVTVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKVEEIQ 295

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L KG+ F  LA+E  +     S G    F+ + + D +  +++++L K    +  +  
Sbjct: 296 QRLAKGESFAALAKEFSQDPGSSSKGGDLGFAGKGVYDPAFEEALYALNKD-QVSQPVRT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  +  ++     +F  +K+ ++N ++     +K  E  K+LE+     + + + 
Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLEDSAFESSDLTQP 414

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462
           ++   +           G +        +     ++   F  +  +  S  +T+ L   +
Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGSNSNTLELDPET 467

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+ KE +  +   LE V + ++             +K   L+    ++GK      K
Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRAQLVKEHATAAAKTKGEALLAGL-RDGK-IPLAAK 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574
             G    +   ++R     +      +  +F  P  + K  P        +G   +V   
Sbjct: 526 QDGRDWKSMEAVSRS---QEGVDPQVLQALFRMPKPVAKDKPEFASITAADGSFVIVRLN 582

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V  +      EK ++  +L     +    +  A L+S+  + 
Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625


>gi|169633493|ref|YP_001707229.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter baumannii SDF]
 gi|169152285|emb|CAP01195.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter baumannii]
          Length = 621

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 109/635 (17%), Positives = 221/635 (34%), Gaps = 33/635 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ LV+   P  + G+       + +    +V  Q +         +
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           +        +    +        +  K LD LVS   L Q  E +G+     ++   +A+
Sbjct: 61  RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P    ++ +FS  ++ + L   G+  +  I    +  +   +   F      S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +           SN   T ++ K+++ ++ P    + Y++     
Sbjct: 178 IANLQTEQRTLHLASIKLDPYKTGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------G 293
             K    ++ EL+  Y K  E       R V+ ++       D A Q L K        G
Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F Q A +  +  +  + G   + Y P V   +   ++ SL K G  +  +   +GY I
Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHI 356

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
              +  + +   SF+  K  +  ++   K +    +    L E +    S+D + ++ K 
Sbjct: 357 IE-AETQANQIPSFEAEKSRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKG 415

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             I+                 + P  +  LF    K+   +    + L +G  +WV++++
Sbjct: 416 TKIE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
              A  + L + + +VK      K  +   +K   ++ E+  +      +      +  +
Sbjct: 473 YHAAGVKPLAQAMNEVKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFES 530

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582
                R    ++          FS P        V    + N L  V     NS      
Sbjct: 531 AGVFTR----SQGLKRAIERAAFSVPAPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAM 586

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           P  +  +      Q   + +L+    YLKS   + 
Sbjct: 587 PADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621


>gi|258542318|ref|YP_003187751.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633396|dbj|BAH99371.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636455|dbj|BAI02424.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639508|dbj|BAI05470.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642564|dbj|BAI08519.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645619|dbj|BAI11567.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648672|dbj|BAI14613.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651725|dbj|BAI17659.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654716|dbj|BAI20643.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-12]
          Length = 639

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 124/634 (19%), Positives = 256/634 (40%), Gaps = 21/634 (3%)

Query: 1   MLEIIRK-ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFIN 58
           M+  +R+    +W+ ++  +V+F+ F+ WG+ D +  +      V  VG+Q+V       
Sbjct: 1   MISYLRRVFVESWLGRVTAIVIFLAFVGWGIGDVMGYMGEETDVVAKVGQQQVSADDLAT 60

Query: 59  SWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           + + EL  I++++G    S+   A    +  +IL  L+  A L    + + +      V 
Sbjct: 61  ALQSELPTIARQMGVTDPSQIPLAMQRQVAYQILHRLIGQAELLNTAQKLKVVVPDSAVR 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            E+   P F G + +F    F  +L   G+ E+ ++D     L+   ++         S+
Sbjct: 121 DEVFSLPYFKGANGQFDRASFNQKLRDRGLTEQRFLDMVRNDLTTRTILQPLAQAGSVSD 180

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +L +   +  + R VD++ +     P    P +AVL +++  +   +R PE +    ++
Sbjct: 181 TMLQRFLTYGAKTRVVDFVSIPFDAQPTPKAPDDAVLQRYYNNHPWMFRTPELRHAKIVV 240

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                    I +   +++  Y++ K +Y  PE R ++ +   +Q +A     + K G  +
Sbjct: 241 LSPQTVADSITLGEADIKRIYDEQKSRYDVPETRDIQLITLQDQAQATAIANAWKVGGNW 300

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             + +   K  + + + +     IP  +L  +IF   + G  +  +    G+ +  V+ I
Sbjct: 301 QAI-QNSAKDAAAVEMPNARPSTIPSATLRQAIFQAPE-GQVSGPLKTESGWAVFRVTKI 358

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI--D 414
               T  +++ KKDI +Q R   A     E  ++L++ LA G  +D I      V+    
Sbjct: 359 TAPHTTPYEDAKKDILSQYRAAVAPSVAGERKRKLQDALA-GKGLDAIPADLGAVAAAGT 417

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           L               A+   +E ++ ++F +  P ++   V  PD S   V++  + PA
Sbjct: 418 LDAQGMTADKEPAPLPASGKLREAIIHQIFTQ-KPGARATLVDGPDNSSFAVEVDTATPA 476

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG-KNLGASLLTTNQ 533
             R  E+   DV   W+        + +A  L L      KN + +   N   + +T + 
Sbjct: 477 APRTFEQAHADVLAAWQAEARKHAANEQATNLYLAT----KNKQALATTNAPGAQMTRDA 532

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDK 589
                  NK      +  +        +    E+   ++V  VT     +   P     +
Sbjct: 533 AFSYAKPNKNIPDALMDYLPRMQPG--QAVMAEDDGHFLVAVVTKLFVPNPPAPADGVQR 590

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
               L Q  + DL+ S +  L  +    +++  +
Sbjct: 591 LKDSLAQADSDDLVASYVEALSKRTPPHINERAV 624


>gi|260555138|ref|ZP_05827359.1| ppic-type ppiase domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
 gi|260411680|gb|EEX04977.1| ppic-type ppiase domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
          Length = 621

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 110/635 (17%), Positives = 222/635 (34%), Gaps = 33/635 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ LV+   P  + G+       + +    +V  Q +         +
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           +        +    +        +  K LD LVS   L Q  E +G+     ++   +A+
Sbjct: 61  RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P    ++ +FS  ++ + L   G+  +  I    +  +   +   F      S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +      A    SN   T ++ K+++ ++ P    + Y++     
Sbjct: 178 IANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------G 293
             K    ++ EL+  Y K  E       R V+ ++       D A Q L K        G
Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F Q A +  +  +  + G   + Y P V   +   ++ SL K G  +  +   +GY I
Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHI 356

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
              +  + +   SF+  K  +  ++   K +    +    L E +    S+D + ++ K 
Sbjct: 357 IE-AETQANQIPSFEAEKSRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKG 415

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             I+                 + P  +  LF    K+   +    + L +G  +WV++++
Sbjct: 416 TKIE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
              A  + L + + +VK      K  +   +K   ++ E+  +      +      +  +
Sbjct: 473 YHAAGVKPLAQAMNEVKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFES 530

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582
                R    ++          FS P        V    + N L  V     NS      
Sbjct: 531 AGVFTR----SQGLKRAIERAAFSVPEPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAM 586

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           P  +  +      Q   + +L+    YLKS   + 
Sbjct: 587 PADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621


>gi|239501895|ref|ZP_04661205.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB900]
          Length = 621

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 110/635 (17%), Positives = 222/635 (34%), Gaps = 33/635 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ LV+   P  + G+       + +    +V  Q +         +
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           +        +    +        +  K LD LVS   L Q  E +G+     ++   +A+
Sbjct: 61  RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P    ++ +FS  ++ + L   G+  +  I    +  +   +   F      S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +      A    SN   T ++ K+++ ++ P    + Y++     
Sbjct: 178 IANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------G 293
             K    ++ EL+  Y K  E       R V+ ++       D A Q L K        G
Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F Q A +  +  +  + G   + Y P V   +   ++ SL K G  +  +   +GY I
Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHI 356

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
              +  + +   SF+  K  +  ++   K +    +    L E +    S+D + ++ K 
Sbjct: 357 IE-AETQANQIPSFEAEKPLLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKG 415

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             I+                 + P  +  LF    K+   +    + L +G  +WV++++
Sbjct: 416 TKIE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
              A  + L + + +VK      K  +   +K   ++ E+  +      +      +  +
Sbjct: 473 YHAAGVKPLAQAMNEVKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFES 530

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582
                R    ++          FS P        V    + N L  V     NS      
Sbjct: 531 AGVFTR----SQGLKRAIERAAFSVPAPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAM 586

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           P  +  +      Q   + +L+    YLKS   + 
Sbjct: 587 PADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621


>gi|124267144|ref|YP_001021148.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Methylibium petroleiphilum PM1]
 gi|124259919|gb|ABM94913.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Methylibium petroleiphilum PM1]
          Length = 640

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 106/647 (16%), Positives = 238/647 (36%), Gaps = 52/647 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E +R  +R  +  I ++++F  F+ +G+        G++ V  V    +  + +  + 
Sbjct: 1   MFEFVRSHTR-LLQFILVLLVFPAFVFFGVQGYTGMSEGNAVVAKVAGTSITQAEWDAAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + ++  +  +    V+ +   +    ++ LD LV    +    + + L A   R+    A
Sbjct: 60  RNQVERLRAQSPG-VDLKLFDTPEAKQRTLDALVRERVMLVAADKLHLTASDERLQRVFA 118

Query: 121 RSPLF---HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D   + D     LA +G++ +++     + L+   V+    G +   + 
Sbjct: 119 SDPQLAFLRKPDGSLNAD----VLAAQGMSARQFEQQLRQDLAMRQVLQGVSGTVLAPSR 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK--YKDNYRAPEYKRISYI 235
               A     + R V       +      + ++A +  +++   +   +  PE   I Y+
Sbjct: 175 PTSTALDALLQQREVRIARFEAQKFVTKVNVTDADIEAYYKDGRHAAEFETPEQASIEYL 234

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE---------- 285
           + D+   +  + +S+D+L+  Y +N+ +Y +PE R    ++   +K A            
Sbjct: 235 VLDLDAIKSGLTVSDDDLRKYYAENESRYVAPEERRASHILIKAEKGASAEQREKARTKA 294

Query: 286 ---AFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
                ++ K   KF +LA+    + G ++    L  F++  +      D+ F+L K G  
Sbjct: 295 ATLLAEARKDPAKFAELAKKNSEDPGSAVQGGDLDFFARGAMVKP-FEDAAFAL-KPGQL 352

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL- 397
           + V+   FGY +  ++ ++     +F+ VK +I N+++   A  +  E  +     +   
Sbjct: 353 SEVVESDFGYHVILLTAVRGGEKKAFESVKAEIENEVKQQLAQRRYAEAAEIFSNTVYEQ 412

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
             S+   + + K+       V         +         + L  +F  +   +K +T A
Sbjct: 413 ADSLKPAAEKLKLTVRTASGVARTP----AQGTTGALASPKFLEALFAAETLRNKRNTEA 468

Query: 458 LPDGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           +  G    V  +I E  P+R   L EV   V++     ++A     +A   +  + K G 
Sbjct: 469 VDLGGSQLVAGRIVEYAPSRKLPLAEVKDRVRERVVVEQSAALARKEALARLAAW-KGGA 527

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVV 573
               +             +       +      I  V       +  +   +     Y V
Sbjct: 528 EPEGL----------EPAMTVSRGRQQELPPALIDAVMKASPAPLPSWTGVDFGDEGYAV 577

Query: 574 FKVTN--SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
            +V     +     +  +      Q+      ++  A LK +Y V +
Sbjct: 578 VRVDKLLPRDAAAGDDKRLQQQYGQIWGAAEDEAYYAALKERYKVKI 624


>gi|332529107|ref|ZP_08405071.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
           ATCC 19624]
 gi|332041330|gb|EGI77692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
           ATCC 19624]
          Length = 647

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 106/656 (16%), Positives = 242/656 (36%), Gaps = 54/656 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E +RK ++  +A + ++++   F++ G+            V  VG+ ++    +  + 
Sbjct: 1   MFENLRKHNKILMA-VLVLLIVPSFVLVGIDGYTRMTQKDRVVAHVGKIEITQGEWDAAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E   + Q +   +++    S    + +L+ ++    L Q   D  L     R++ E+ 
Sbjct: 60  RSETDRLRQMMP-NLDARLLDSDAARRGVLERMIRERVLQQAALDAQLNVSDARLFQELQ 118

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P          K   + + + LAR+G++   +       L+   +     G    +N 
Sbjct: 119 TIPAISQLRNAQGKIDMEAYQALLARQGMSPAGFEAQLRADLAVNQIQSSVTGTAVQTNT 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D A   + E R V                S A L  +++  +  ++APE  RI YI+ 
Sbjct: 179 SADLALDAWLERREVQVARFTPADYATRVQVSEADLQAYWQANQGLFQAPEQARIEYIVL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------- 290
           D+    K+  ++ ++L+  YE+N ++   PE R    ++    K+A  A +         
Sbjct: 239 DIDALRKEARVNEEDLRNYYEQNVDRLSGPEERRASHILITAAKDAPAAERQKAREQAQA 298

Query: 291 -----------KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKK 335
                       + K F +LA +  +          LG F ++ +  +   ++ F+L K+
Sbjct: 299 LLAELRKAPANAQAKLFAELARKHSQDPGSASRGGDLGYFGRKAMT-LPFEEAAFAL-KQ 356

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G+ + V+   FGY +  V+ IK     ++ E++  +  ++R  +A  +  E  +     +
Sbjct: 357 GELSDVVETDFGYHVITVTGIKKPKAKTYAELRPSLEAEIRSQQAQTRYAEAAEAFTNGV 416

Query: 396 AL-GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
                S+  ++ + ++      +     +     +   +    +LL  VF  D   +K +
Sbjct: 417 YEQPDSLKPVADQLRLSIQTATVSREPAQVT--ADAQGVLTNARLLSAVFSDDAIQAKRN 474

Query: 455 T--VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
           T  V +        ++ + +PAR   L EV   V++   + + A+         +  +  
Sbjct: 475 TEAVEISPSRLAAARVVQHLPARTLPLAEVQAAVRERVVSARAAQLAREDGQAKLAAWK- 533

Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--- 569
                        A L     ++R    N       +  V    ++     P+  G    
Sbjct: 534 --------ATPAQAKLGAAEVVSRDQARN--LPRALLDAVLRADLQSAATNPVWVGTDLG 583

Query: 570 --SYVVFKVT----NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
              Y++ +V      +      ++++      Q   +   ++    L+ +    + 
Sbjct: 584 EQGYILARVNRRIERAPAVEPGQQNQQRLQYLQWWTQAENEAYYQLLRQRLKTRID 639


>gi|219871319|ref|YP_002475694.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis SH0165]
 gi|219691523|gb|ACL32746.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis SH0165]
          Length = 624

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 103/642 (16%), Positives = 230/642 (35%), Gaps = 38/642 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + S  WV KI   ++ + F++         ++  ++V  V  +++    F  + 
Sbjct: 1   MIEKMHEKSGGWVFKIIFALVSLSFVL--GGIGGGLIATDNSVAKVNGEEISQQVFSRAK 58

Query: 61  KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            Q+  +++ ++G                 + IL+ LV    L Q+ + + ++    ++  
Sbjct: 59  NQQQNILNAQLGERFWDLMDNPIYVKQFHESILNGLVDDELLRQYAKSLKIDVSADQIKS 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI  SP F  +D KF+++++   L   G+    Y     + +    +    V        
Sbjct: 119 EIVNSPAFQ-QDGKFNNNLYQQALRNNGLTADGYAAIVYEGMLFAQIQEAIVNSSFTVPA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +   +   + R V     +          S   +  ++E  K N+  PE   + YI  
Sbjct: 178 QQELLAKLLLQKRQVRLATYSIAKEVNNQTASAEEMQAYYEANKANFVNPEKLTVEYISI 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           +  +   KI+++N+++   Y+ NK KY +     +  +    + EA+E  Q+L KG+ F 
Sbjct: 238 EPKDLANKIQVTNEQIDTYYQTNKAKYTTKGEAKIAHIQVATEAEANEIVQALAKGEDFA 297

Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           QLA+ + +          LG  +K  +   +  D+  ++   G  +  I     + I  V
Sbjct: 298 QLAKAKSQDKLSAAQGGDLGW-AKAGVFPKAFEDAA-NMLDAGKTSQPIKVDNAFHIIKV 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVS 412
                   V  ++VK  I + +R      +     + +         S++ +++   ++ 
Sbjct: 356 LERNVETVVPLEKVKAQITDTIRNELLLTEYSNITREMANVAFENSGSLEAVAKVANVLV 415

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP-----DGSYMWVQ 467
                          + V A    E++L  +F  +   +  ++ A+      +   M+V+
Sbjct: 416 HKTDAFTR-------ETVPAELDNEKVLRVLFDSEVRQNGQNSEAIDLSDATNTKTMFVR 468

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           +        +  +E  + V++  K  K  + +  KA   V   +K        G +    
Sbjct: 469 VSHYQAENVQTFDEAKSAVEQAVKQQKALKVLEEKATTQVAALNKGETVEVAFGASEELV 528

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK---CFPIENGLSYVVFKVTNSKVGPV 584
                       + +         VFS      K             VV  +     G  
Sbjct: 529 F----------AQAQITEPALAQAVFSMAKPAEKPTYQTARNTNGDVVVIALDKVSDGTA 578

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            E     +   Q     L + ++  L+ +  + V+ + + + 
Sbjct: 579 DEFKPLQAQFNQAERVVLRNDLLKDLRERAKIEVNQDFLDQL 620


>gi|184157984|ref|YP_001846323.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ACICU]
 gi|332874443|ref|ZP_08442346.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059]
 gi|183209578|gb|ACC56976.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter baumannii ACICU]
 gi|323517928|gb|ADX92309.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter baumannii TCDC-AB0715]
 gi|332737287|gb|EGJ68211.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059]
          Length = 621

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 109/635 (17%), Positives = 223/635 (35%), Gaps = 33/635 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ LV+   P  + G+       + +    +V  Q +         +
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           +        +    +        +  K LD LVS   L Q  E +G+   + ++   +A+
Sbjct: 61  RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSNAQIEQMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P    ++ +FS  ++ + L   G+  +  I    +  +   +   F      S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +      A    S+   T ++ K+++ ++ P    + Y++     
Sbjct: 178 IANLQTEQRTLHLASIKLDPYKAGLTASDQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------G 293
             K    ++ EL+  Y K  E       R V+ ++       D A Q L K        G
Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F Q A +  +  +  + G   + Y P V   +   ++ SL K G  +  +   +GY I
Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHI 356

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
              +  + +   SF+  K  +  ++   K +    +    L E +    S+D + ++ K 
Sbjct: 357 IE-AETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKG 415

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             I+                 + P  +  LF    K+   +    + L +G  +WV++++
Sbjct: 416 TKIE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
              A  + L + + +VK      K  +   +K   ++ E+  +      +      +  +
Sbjct: 473 YHAAGVKPLAQAMNEVKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFES 530

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582
                R    ++          FS P        V    + N L  V     NS      
Sbjct: 531 AGVFTR----SQGLKRAIERAAFSVPAPKPGMWSVTIANLPNELVVVAVSNVNSAAVNAM 586

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           P  +  +      Q   + +L+    YLKS   + 
Sbjct: 587 PADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621


>gi|218461733|ref|ZP_03501824.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli Kim 5]
          Length = 432

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 143/435 (32%), Positives = 245/435 (56%), Gaps = 3/435 (0%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I + +YI   +K+  R+ +V     G      L+D  K +  E+RSVDY++L N ++  I
Sbjct: 1   IRQDDYIQERSKVAVRSQIVDAVSNGFTAPKTLVDAMKLYGGESRSVDYLLLTNANIEPI 60

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
             P++ VL  WFE  K  YRAPEY++I+Y+     +      +++D+++  ++K K+ Y 
Sbjct: 61  KAPADDVLASWFEGVKQRYRAPEYRKIAYLKLQPADIADAATVTDDQVREAFDKGKDSYR 120

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
           +PE RT+EQL F ++  A  A  +LK G  F QL  +QGK+ SD+ LG F+K+ +PD ++
Sbjct: 121 TPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLVSDQGKTASDVLLGEFTKDKVPDQAV 180

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
           A++ F+++K G  TPV+ GSFG VI  ++NIK     +F EVK++I  Q+ ++ AS++V 
Sbjct: 181 AEAAFAVSKDGGTTPVVDGSFGPVILRITNIKAETVKNFDEVKEEIRKQLALSNASQEVI 240

Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
             + ++E+  A G ++++I+ + K+ ++ +  VD  G D  GKEV  IP K+QLL   F 
Sbjct: 241 NVHDQIEDLRAGGATLEDIASQLKLNAVTIDAVDATGADKDGKEVKDIPVKQQLLGEAFK 300

Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
            +  +     + + +  Y+W  ++E  P RDR + EV     +DW   +   E++ KA++
Sbjct: 301 TEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPIAEVREKAVEDWTAEQQKAELAKKADE 359

Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
           L  +  K G    DI   LG ++ + + I R   ++   G  G+   FSGP++ V     
Sbjct: 360 LKAQAQK-GTALADIATPLGIAVESKSGITR-STDDPVLGRAGVKAAFSGPLDTVASAVG 417

Query: 566 ENGLSYVVFKVTNSK 580
            +  + ++ KVT   
Sbjct: 418 ADPSTQILMKVTEVN 432


>gi|254439696|ref|ZP_05053190.1| hypothetical protein OA307_4566 [Octadecabacter antarcticus 307]
 gi|198255142|gb|EDY79456.1| hypothetical protein OA307_4566 [Octadecabacter antarcticus 307]
          Length = 619

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 114/623 (18%), Positives = 238/623 (38%), Gaps = 30/623 (4%)

Query: 8   ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
            ++ +   I L +LFV  + +G S          ++ +VG + +    +    + ++ + 
Sbjct: 10  KTKNFFVWIILGLLFVGLMGFGASGL---SGNLQSIGAVGDKTLSAQRYFQELQTQIRIG 66

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
           S + G  ++   A+S  L  + L  +V+  +LD     +GL      V  ++     F G
Sbjct: 67  SSQAGRTISFPEAQSAQLPDRALQIVVAERSLDNEAAVLGLSVGDSVVSQQVLGDLNFRG 126

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
            D  F    +   L+R G+N +EY     +  +R  +      G+       D   +F  
Sbjct: 127 FDGTFDRTTYRETLSRNGMNVREYETGLREGAARALLQSAVYAGVPDPATYGDTVAKFVR 186

Query: 188 ENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
           E R+  +  L    +   + +PS A L   ++   D Y + E + + +        +  +
Sbjct: 187 EGRTFTWAPLTATDIEITLPEPSEADLQAHYDANPDIYTSLETRVLRFAWITPAMIQDDM 246

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGK 305
            +  DEL+AEY+   +++   E R +E+L+F N   A  A  ++  G   F QL  ++G 
Sbjct: 247 PVDEDELRAEYDDRIDEFVQAERRLIERLIFSNDAAAQTALDAINAGDTTFPQLVADRGL 306

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           SL D+  G  +   + D      +F+ ++ GD +       G  +  ++ +  +   +F+
Sbjct: 307 SLEDVDGGDVTLAELGDAGAG--VFA-SQTGDVSGPFMTDLGPALFRMNAVLAAQNTTFE 363

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +   D+       +A   +++    +   LA G S+D +  +  ++  +L   +    D 
Sbjct: 364 DALPDLREDQSAARARRVIEDQIDPITNLLAGGASLDNLVDQTDMILGNLDYTNQTTND- 422

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
               +AA      +       D P   D    L DG    V + E        L+++   
Sbjct: 423 ----IAAYAAFHDVAATQDVSDFPELAD----LDDGGLFAVDVIEVRAPALIPLDDIREQ 474

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
           V   W+  +T   V + A     +     ++F      L  + +  N I R    N    
Sbjct: 475 VVAGWEAQETTAAVIAAAESKQAQLMSAVQDFA----FLDLNAIQDNNITRRGFINGA-P 529

Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD------KFISYLTQMMN 599
              ++ VF   +  V+  P  NG   ++ ++         ++              + + 
Sbjct: 530 RSFLTDVFEMAIGDVQVLP--NGAGAIIVRLDAITAANTSDEAYTAEVAAVAETAGEGIA 587

Query: 600 KDLLDSVIAYLKSQYSVTVHDNL 622
            D+ +     ++ +  V V++  
Sbjct: 588 LDIYELYSRTVQLRTDVQVNEQA 610


>gi|117925439|ref|YP_866056.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp.
           MC-1]
 gi|117609195|gb|ABK44650.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp.
           MC-1]
          Length = 636

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 123/646 (19%), Positives = 254/646 (39%), Gaps = 30/646 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML ++RK++ +WV KI L+++ V F +WG+   L +    + V++V            S+
Sbjct: 1   MLNVMRKSANSWVIKILLILIAVSFSVWGIEG-LRNAGRDTPVLTVENWSASQGYIRQSF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            + L    Q++G +          L ++ L  +V    +      +GL      +   IA
Sbjct: 60  DRFLREQKQRLGNLPLDNPMIRQQLRQQFLQRMVDEQLMLHSAMQMGLTLSPKGLQKTIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  K  KF   ++   L +  ++ K +        +R  +            LLLD
Sbjct: 120 EDPTFQLK-GKFDDALYRQLLRQNRLDPKTFEQDTLVRHARAHLAQGLTQVATTPTLLLD 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
            A +   E R V  ++L+   + ++ DP +  L  + E  +D Y   +  ++ Y+L D  
Sbjct: 179 DALKQESEKRRVALLMLDQATLASVDDPGDEALRAYQENNRDAYSIKQRVKVRYLLLDAE 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-----------KEADEAFQS 289
               ++++   ++ A Y+ NK  Y + E R +  ++   +           K+ ++A Q 
Sbjct: 239 SVRDELKVDEAKIIAYYDDNKPLYKTLESRKLRHILAKFKAGDATAKAAAQKKIEDAKQR 298

Query: 290 LKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           +  G+ F ++A+   E   +     LG F +         ++ F+L + G  + V+   F
Sbjct: 299 IANGESFAEVAKLLSEDVTASQGGELGVFQRGGGLVERFEEAAFTLPE-GKVSEVVESPF 357

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ +  V +I P+ T SF++VK +IA Q+    A E +      LE+ LA   S+  I +
Sbjct: 358 GFHLILVDHIDPAGTRSFEQVKPEIAEQLFQEGAGEAIYSKSIALEDMLATADSLATIGK 417

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
              +   +   ++F+  D           +E     V        +   V L +  Y  +
Sbjct: 418 ELNLRFKETGWIEFSKLDETVSI-----EREAKFHEVAFSTLKGERSTLVELANNRYFVL 472

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN-LG 525
           ++ +   A  + L EV   +   ++  K   +     +   L+    G ++ ++ K+   
Sbjct: 473 EVTDHEDATLKPLAEVRAALLAAYRQEKAQTQAQELMDN-ALKALNSGSSWEEVAKSHAP 531

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM-VKCFPIENGLSYVVFKVTNSKVGPV 584
                      MD E+K    +     F   ++  +    I  G    + K+     G V
Sbjct: 532 FQAQAPAPFTAMDKESKV-PANVRQAAFRIALDKPIYEKVISEGNHRYILKLLEVTPGTV 590

Query: 585 Q----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                   +  +  T M+  ++ ++ +A+ +    ++    +    
Sbjct: 591 DTDMLANSQLQAMFTNMLGNEMREAFMAWRRKHAEISYDPKVFNNL 636


>gi|315499883|ref|YP_004088686.1| ppic-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
           excentricus CB 48]
 gi|315417895|gb|ADU14535.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
           excentricus CB 48]
          Length = 642

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 127/634 (20%), Positives = 265/634 (41%), Gaps = 18/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+   R+ +++   KI +  L + F ++G+ D LFS   S  VV  G ++     +   +
Sbjct: 1   MISSFRQFTKSLTFKILMAALILSFAVFGMHD-LFSRPSSRNVVDAGDRQTTTDDYRRQF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            Q      Q+ G  +  E A   GL  +I++ L    ++  ++  +GL      V  +IA
Sbjct: 60  DQWKTGAEQQSGQTLTYEDAVKQGLHVRIMEELADMDSVSAWLVKVGLRPSAKVVTDQIA 119

Query: 121 RSPLFHG-KDNKFSHDVFVSRLA-REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           + P+F      KF    +   LA +  ++E ++    +  ++    +   V G++P  + 
Sbjct: 120 KYPIFFDSITGKFDKAKYQQELATQMKMSETKFEQIISDDIANRQFIEASVAGLKPPRIY 179

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                 F  E R    +V+   ++     P++  L ++++  K+  R PE ++ + + F 
Sbjct: 180 AALQSAFASETRDTTLLVVTPDNIEKPGQPTDVELKKFYDDNKERLRRPELRQFTVVSFA 239

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
             +   K+ +   EL+  YE  ++   +PE RT  Q+  P+QK A+   Q+L+ G     
Sbjct: 240 PGDFASKVTVDEAELKKLYEFRRDTLSNPETRTFVQVTVPDQKAAEAVAQALRSGTDPKT 299

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
            A+    ++  I+  +  K  + D  +AD+ F+L K+G+ +  I GS G  +  VS I  
Sbjct: 300 AAKANKGTV--IAYDAKPKTAVADAKVADAAFAL-KQGEVSGPIQGSLGLAVVKVSGITA 356

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
           +    F  V+  +  + +  KA +   +  +  E+  + G      +++  +  I+LP +
Sbjct: 357 ASVTGFDTVRGQLEAEYKADKAKDLAYKASEVFEKERSAGADFLAAAQKAGVRVINLPPM 416

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G+   G+     P    +L   F +      D    L +G Y  +++ E +P+    
Sbjct: 417 TAEGQMGNGQPFQYAP----ILKAAFDQPKGGETD-VTELGNGEYFALRVNEVLPSEVPA 471

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
           L+ +   + + W+     + V++K+ +      K G++   +  ++G  + T   + R  
Sbjct: 472 LDTIKPQMIQAWQQKTAGDRVAAKSEEAAARLRK-GESLEAVASSMGLKVETRAGLARQT 530

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
              +  G +   ++FS     V    + N +  VV KVT    G     ++  +   Q +
Sbjct: 531 APQQV-GPELTGRIFSAKNNEVFTARL-NEMVSVVGKVTAINKGEAAAVNQASAMTGQAV 588

Query: 599 NKDLLDSVIAYLKSQY----SVTVHDNLIQRYLD 628
              L   +   ++           + +     L 
Sbjct: 589 AYGLFQDLSFTMRKGARAAVKTKTNPDAAIAALG 622


>gi|83858361|ref|ZP_00951883.1| rotamase family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853184|gb|EAP91036.1| rotamase family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 635

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 127/637 (19%), Positives = 250/637 (39%), Gaps = 16/637 (2%)

Query: 1   MLEIIRKASRTWVAK-IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML +IR  +R+ +   + + +L   F +WG+SD       S+ V  VG Q V  S    +
Sbjct: 1   MLSLIRSLARSPIIGGMIIALLIAAFALWGVSDIFSGGGTSALV--VGPQTVSASEVQRN 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           ++++L  I Q+    +  E+A  +GL   ++  L++   +D   + +GL      ++  +
Sbjct: 59  YERQLFQI-QRDNPQITREQADQMGLGDSVVRRLIAETAVDAKADQMGLTISDDTLFETL 117

Query: 120 ARSPLFHGKD-NKFSHDVFVSRLAREG----INEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
              P F     N+F    + S L   G    + E+++    T  L R   V   +GG+R 
Sbjct: 118 RSIPAFQNPFTNQFDPGTYASILRENGYRGSMAERQFESDITSELRRAQFVAAALGGVRA 177

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            ++  +    +  E RS+  + L    V     P +  LT +  +    +   E +R++ 
Sbjct: 178 PDIYAEIRAAYENERRSLRALFLRPVLVETPEAPDDETLTAFIGENARIFERAEQRRLTL 237

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           +     +  + +E+S ++LQA Y+   +  +   P  R++ Q   P+Q+ A+ A   L  
Sbjct: 238 VRITPTDLLRDVEVSEEDLQALYDYRLQNGELADPATRSLTQWPAPDQQTAETAAARLGA 297

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           G+    +  E G    +++L       +PD  +A+  F + + G+   V     G+ +  
Sbjct: 298 GESVASVVAELGL-GDEVALADVEAYQVPDAQIAERAFQM-QAGELAAV-ESQLGWRVLR 354

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           +       T  F  V+ ++  ++    A   + +     EE    G +++E +R   + +
Sbjct: 355 IDAANDPDTPDFAAVESELRTELARDTAEGMMLDALGVFEEARGNGATLEEAAREAGLFA 414

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
             +  V   G     +    +     +L   F      + D      DG Y  V++ E  
Sbjct: 415 ERIDFVGANGYSPDREPALTLLQNPDILSAAFAAQQGFATDLEGYGEDGGYFVVRVDEIE 474

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           PAR  +L+EV  D  + W   +T   +    + +       G+    I  +LGA     +
Sbjct: 475 PARLYELDEVREDASRFWVMRETDNRLQEVVDDVQARLD-AGETLDAIAASLGAGARVES 533

Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFI 591
            +   +     F    ++Q F  P         +N  +  +  V                
Sbjct: 534 AVLGREETAGPFNAQLVAQAFRQPEGGRFVSRADNQTTRALVLVDEVIAAEGGAVTQAQR 593

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
           + +T  +  D    V   L + Y V  + +LI + L 
Sbjct: 594 NEMTGELRDDATQIVTNALINAYDVRQNQDLIDQALG 630


>gi|226953081|ref|ZP_03823545.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. ATCC 27244]
 gi|226836173|gb|EEH68556.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. ATCC 27244]
          Length = 623

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 111/636 (17%), Positives = 229/636 (36%), Gaps = 33/636 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ LV+   P  + G+       + +    SV  Q +      ++ K
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFSGGNKADVAKSVNGQDISNKELESAIK 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                    +    +        + ++ +D LV+ + L Q  E +G+     ++   +A+
Sbjct: 61  NYKDQYLALVQG--DESLLNLSAIQERAMDALVARSLLSQQAEKLGISLSDAQLEQMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P F  ++ +FS  ++ + L   G+  +  I    +  +   +    +     S   L Q
Sbjct: 119 QPSFQ-QNGQFSQQLYENYLRSVGLTNQALISSLRQDHALKMISSSLIDNALVSKSDLQQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +           S   +T ++ K+K+ ++      + Y++     
Sbjct: 178 LANLQTEQRTLHLASIKLDDYKKGVTASTQEITDYYNKHKNEFKQVASVDVDYVVLSPAL 237

Query: 242 KEK-KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL--------KK 292
            E+  + +++ +LQ  Y    EK      R V+ ++    +  D A Q L        + 
Sbjct: 238 LEQANLAVTDADLQQAYAAFVEKQQQSVKREVKHILVTTDERDDAAAQKLINDVYAKIQS 297

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVI 350
           G  F Q A +  +  S  + G     Y P    A  D+  +  K G  +  +   +GY I
Sbjct: 298 GMTFAQAASQYSEDPSSKNQGGLVSAYAPGAFSADFDNAVNTLKNGQVSKPVKTQYGYHI 357

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
             V  +      SF+  K  +  ++  TKA+    +    L E +    S++ +++  K 
Sbjct: 358 IEVQ-VPTVNIPSFESEKARLTAEVEKTKAANLFSDTVNNLNEMVVGSDSLEVVAQEVKA 416

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             ++      A        + +    +  LF    K+   +    + L +G  +W+++++
Sbjct: 417 ARVE---SAKAITLATQHPILSDLNVKVKLFSDDVKNGDRNASSNIQLANGDSIWIKVRD 473

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             PA  + L EV T+VK      K  +   +K   ++ ++  +      +      +   
Sbjct: 474 YHPAGIKPLSEVTTEVKAKVVEQKAYKAAQAKMASILADFKTQ--PAAQVVAKSQVNFEN 531

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV------EMVKCFPIENGLSYVVFKVTNSKVG-- 582
                R    +           FS P              + N L  V     +S V   
Sbjct: 532 AGTFAR----SHGLKRAIERAAFSIPAPSKEGMWSATTAKLPNELVIVAVSNVDSSVASS 587

Query: 583 -PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            P +E  +      Q   + +L+   AYLKSQ  + 
Sbjct: 588 LPEKELLELKQLYQQFRGQQVLEDYTAYLKSQADIK 623


>gi|326403424|ref|YP_004283505.1| hypothetical protein ACMV_12760 [Acidiphilium multivorum AIU301]
 gi|325050285|dbj|BAJ80623.1| hypothetical protein ACMV_12760 [Acidiphilium multivorum AIU301]
          Length = 628

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 116/630 (18%), Positives = 234/630 (37%), Gaps = 8/630 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML +IR+    W+ + F VVL   F+ WG+S  +  +  S  + +VG Q +   +   ++
Sbjct: 1   MLSMIRQLLDNWIVRAFFVVLIGVFVFWGVSSVVMGIGASDAIATVGGQPIKIEAVNAAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ L   + +        +        + L   +  A ++     +G+ A    +  ++ 
Sbjct: 61  QRTLNAYATQNSGR-EPSKGERRLFADQALGTAIDRAAMELEARRMGVVAPPAAIRQQVF 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FHG D KF    F + LA   +    ++      L  + ++     G+     L+D
Sbjct: 120 AIPAFHGPDGKFDKATFNAVLANHNLTPAAFMAEIASGLKTSQIIDAVTAGVSAPAPLVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q   +  + R+V +  L          P+  VL +++  +   +  P  +    ++    
Sbjct: 180 QIFAYAAQERTVQFAQLPFAAANPPPAPAETVLRRYWRDHPGRFSTPALRDADVVVLSPA 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
              +   +S  E+ A+Y++ K K+     RTVE +   + K A    ++ K G  +  + 
Sbjct: 240 LIARGEAVSQAEIAAQYQQEKAKFAQTPTRTVEIITAEDAKNAAALAKAWKGGADWAAMQ 299

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +    + +   + + +K      +        A  G+ +  + G+ G  +  V+      
Sbjct: 300 KAAAAATATAIVMTDAKPSDLPSATLAKAAFAATPGEVSAPVKGALGTYVFKVTKAVAGG 359

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                 V   I  ++++ KA   V      L++ LA  T++ ++     +    +  VD 
Sbjct: 360 DKPLSAVADQIRAEIQLRKARNVVDNTLSHLQDALAGSTALGKLPASLHLAKARV-SVDR 418

Query: 421 AGKDVKGKE--VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
            G  V GK   +       Q + +      P +    V+ P  SY  + +   I    + 
Sbjct: 419 EGMTVDGKPAGIPGPAALRQAIVKAIFATAPGNTPQAVSGPGDSYYAIAVHRIIKPALKP 478

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
            ++V  DV  DW   +   +    A +L+    K GK         G ++ T+  + R  
Sbjct: 479 YDKVKADVLADWTGAQVERQEEVAAAKLLTA-VKGGKTLAAAASAAGLTVTTSAPMTR-A 536

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSY-VVFKVTNSKVGPVQE-KDKFISYLTQ 596
              K          FS           + G    VV  +   K G       +    L Q
Sbjct: 537 KPAKGVPPQLAQVAFSLKKGAPTMVQTQEGFVVGVVSDIAEPKPGSDAAFHQRVADSLGQ 596

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            M +D+L +  A L+ +  V ++  L+ + 
Sbjct: 597 SMQEDVLQTYAAALRQRDHVKINTKLLNQI 626


>gi|240949547|ref|ZP_04753887.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor NM305]
 gi|240296120|gb|EER46781.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor NM305]
          Length = 624

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 105/643 (16%), Positives = 239/643 (37%), Gaps = 39/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E     + +   KI   ++ + F++ G+   L +   S   V V  + +   +F ++ 
Sbjct: 1   MIEKWHDRTNSLGFKIIFTLVSLSFVLGGIGSGLVATDDS--AVKVNGEGISQRTFTDAK 58

Query: 61  KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++  ++  + G     +  +   +   ++ +L++L++   L Q+ + + L+    ++  
Sbjct: 59  NRQQNILYSQKGGEAWDLLDKPEYAREFNQSVLNSLINDELLRQYAKSLKLDVGVDQIKS 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI     F  ++ KF + ++   L   G+    Y     + +  + +    +        
Sbjct: 119 EIVHDANFQ-QNGKFDNKLYQQTLRNAGLTTDGYAAIVREGMIFSQIEEGIINTSFDLPA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +   +  F+ R V     +          S   L  ++E +K     PE   + Y++ 
Sbjct: 178 QQEALAKLLFQKRDVRLATYSLADEAKNQTVSPEELQSFYEAHKKQLLTPETFTVEYLVL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
              + EK+I+I+++++   Y+KNK ++ +     +  +   N+ EA+   Q L  G  F 
Sbjct: 238 TPKDVEKRIQITDEQIATYYDKNKAQFVTKGEANLAHIQVANEAEANAIAQQLNNGADFA 297

Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+           +LG       P  +  ++   L + G  +  I     Y I  V
Sbjct: 298 TLAKEKSTDKLSAAQGGNLGWTKAGTFP-QAFENAASQL-QVGQVSQPIKIDNAYHIIKV 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVS 412
            + K    +   +VK  I   +R    + +     + +         S++ ++   K+  
Sbjct: 356 IDRKAENIIPLAQVKDKITETIRKELLASEYSTVARDMANSAFENSGSLEAVA---KVAG 412

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMWVQ 467
           +++       +      V A    E +   +F  D   +  ++ AL  G       M+V+
Sbjct: 413 LEIHKTSAFTQ----ANVPAELQHEAVEKALFESDLRQTGQNSEALDVGDSTNPRTMFVR 468

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + +    R++ LEE  TDV+   K  K  + + S A   ++    EGKN    G+     
Sbjct: 469 VSDFQAEREKTLEEAKTDVEAMVKREKAEKALLSNAEANLVAL-NEGKNNISFGETQTLV 527

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIENGLSYVVFKVTNSKVGPV 584
                       + +         VF+ P    K             ++  +     G +
Sbjct: 528 Y----------AQAQVQQPVLAKTVFNMPKPADKATYQIARNVKGDVIIVALDKVSDGTL 577

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            E         +     L + ++  L+ + S+ V+   +++ +
Sbjct: 578 AEFKPLEPQFAEANRTILRNDLVKDLRERASIDVNAEFMEQLI 620


>gi|307544940|ref|YP_003897419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
           DSM 2581]
 gi|307216964|emb|CBV42234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
           DSM 2581]
          Length = 607

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 116/639 (18%), Positives = 248/639 (38%), Gaps = 56/639 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD--ALFSVSGSSTVVSVGRQKVPFSSFIN 58
           ML+ IR  S +W AKI +  + V   ++G      L   +   +V  V  + +P      
Sbjct: 1   MLQSIRDRSASWGAKIIIGAVVVAMALFGAESLVGLLGGNDGDSVAKVNGESIPRQQLEL 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
             ++ +          V  E+ R   L  ++LD+L+S   L Q+ E+ GL     ++   
Sbjct: 61  EVQRAIRS------GQVPPEQERE--LRSQMLDSLISERLLTQYAEEGGLHLSESQIDQL 112

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I   P F  +D KFS ++F +RL+  G     + D     + R  +              
Sbjct: 113 IVNLPEFQDQDGKFSRELFRNRLSSAGFTPLAFRDQLRADMKRRQLQQGLAVSEFSLESE 172

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
             +      + RS  +  L    + +  + S   L  ++E + D+Y+ PE  +++Y++ D
Sbjct: 173 ERRLAALQRQTRSFRHHALTVDDLESRPEASEQELQAYYEAHADDYQRPEQVKLAYVVLD 232

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQS 289
             +  ++ ++S  +L+  +     +      R V  ++            +   +E  Q 
Sbjct: 233 REQMAEQADVSEQDLRDAWNAEAAEAD----RRVSHIMVRFGDQRTRQEAEARLEEVRQR 288

Query: 290 LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           L  G  F  LA E     S       LG  S+ +  + +  ++ FSL + G  + ++   
Sbjct: 289 LADGASFADLAAEYSDDTSTSDEGGDLGVISRGFFGE-AFDEAAFSLGE-GQVSDIVETD 346

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
            G  +  V+ +      SF+E +  +A Q+   + S    +  +RL +       +  ++
Sbjct: 347 NGLHLIKVTEL---DRPSFEESRDRLARQVARKQVSTAFDDRAQRLIDESFAAEDLQSVA 403

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463
               +       V         + V+ +  +  ++ + F  D  +       + L +   
Sbjct: 404 EELNLERKTTDWVSR-------QNVSGVLAEPGVMRQAFTPDVLEEGFNSEVIELDEDRR 456

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           M +++ +   A    LEEV + V +  +  KT E + ++A++L+ E  + G+        
Sbjct: 457 MVLRVLDHREATTLPLEEVRSQVVEAVQAQKTREALENEADRLI-EALRSGETPA----- 510

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGP---VEMVKCFPIENGLSYVVFKVTNSK 580
                  T  ++R D  +       +   F  P    +        +G   V+  +    
Sbjct: 511 --IDWQRTEGLSRQD--DTDLAQPVVDAAFRLPHPEADETVYGRAIDGQRVVLIALDEVA 566

Query: 581 VGPVQEK-DKFISYLTQMM-NKDLLDSVIAYLKSQYSVT 617
            G V E+ + F++ + Q + ++  ++ ++ +L+ Q  + 
Sbjct: 567 EGQVDEQSEAFVARMAQQLRSQAAVNGLLGFLREQAEIK 605


>gi|50084586|ref|YP_046096.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase)
           [Acinetobacter sp. ADP1]
 gi|2623969|emb|CAA05330.1| putative peptidyl-prolyl cis-trans isomerase [Acinetobacter sp.
           ADP1]
 gi|49530562|emb|CAG68274.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter sp. ADP1]
          Length = 622

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 99/636 (15%), Positives = 222/636 (34%), Gaps = 34/636 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  RK  + W+ K+ L++   P  + G+       + +    +V  Q +      N  K
Sbjct: 1   MESFRKVIKGWLGKVLLILFLTPLALVGIEGYFGGGNKADVAKTVNGQDISKKDLENLTK 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                         +        +++  L+ L++ + L Q  E +G+     ++   +A+
Sbjct: 61  TYKDQYLSLAKG--DETLLNQSYIEENALNTLIARSLLLQQAEKLGISLSDAQIEKMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P F  ++ KFS  ++ + L   G+  +  I    +  +   +          S   L Q
Sbjct: 119 QPSFQ-ENGKFSETLYSNYLRSVGMTSQALIASLRQDHALKMLTSSVTDTALVSKFDLHQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +         + +N  +  ++ K+K+ ++      + YI+    +
Sbjct: 178 IAVLQTEQRTIHLASIKLDDYKKNINVTNQEIADYYNKHKNKFKQVASVDVDYIVVSPAQ 237

Query: 242 K-EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKK 292
                  ++  ELQ  Y    E       R V+ ++           QK A++ +  ++ 
Sbjct: 238 VSSAPAAVTEAELQQAYNAFVETQKKDAKRLVKHILITADGRSDAEAQKIANDVYAKIQA 297

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYV 349
           G  F + A++     S  + G     Y P +       ++ SL K G  +  +   +GY 
Sbjct: 298 GTHFSEAAKQYSDDTSSKNNGGVVDAYQPGIFSKDFDQAVESL-KNGQVSKPVKTQYGYH 356

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           I  V   +     S +  K  +  +++ +K++    +   RL E +    ++D +++  K
Sbjct: 357 IIEVETAQ-VKLPSLEAEKARLTAEIQKSKSANAYTDTINRLNEMVVSTDALDSVAQELK 415

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
            + ++               + + P  +  LF    K+   +    + L +G  +WV+++
Sbjct: 416 GLRVE---SLNGVTLSTQHPLLSDPNVKAKLFNDDVKNGDRNASSNIQLANGDTIWVKVR 472

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
               A  + L      V+      K      +K   ++ ++  +      +    G    
Sbjct: 473 NYHAAGVKPLATATAQVRAKLIEDKAFNAAQAKIQAVLNDFKTQ--PADQVVAKSGLKFE 530

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVGPV 584
           +     R    ++    +     FS          V    + + L  V     NSK    
Sbjct: 531 SAGTFTR----SQGLKREIERAAFSLTAPKAGMWSVATAKLPDELVVVGVSDINSKAADA 586

Query: 585 ---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
              ++  +  +   +   +  LD    YLKS   + 
Sbjct: 587 LNPEQLQELGNLYQRFRGQQELDDYTQYLKSHAKIK 622


>gi|240851485|ref|ZP_04752236.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor 202]
 gi|240310003|gb|EER48295.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor 202]
          Length = 624

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 106/643 (16%), Positives = 238/643 (37%), Gaps = 39/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E     + +   KI   ++ + F++ G+   L +   S   V V  + +   +F ++ 
Sbjct: 1   MIEKWHDRTNSLGFKIVFTLVSLSFVLGGIGSGLVATDDS--AVKVNGEGISQRTFTDAK 58

Query: 61  KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++  ++  + G     +  +   +   ++ +L++L++   L Q+ + + L+    ++  
Sbjct: 59  NRQQNILYSQKGGEAWDLLDKPEYAREFNQSVLNSLINDELLRQYAKSLKLDVGVDQIKS 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI     F  ++ KF ++++   L   G+    Y     + +  + +    +        
Sbjct: 119 EIVHDANFQ-QNGKFDNNLYQQALRNAGLTPDGYAAVVREGMIFSQIEEGIINTSFDLPA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +   +  F+ R V     +          S   L  +++ +K     PE   + Y++ 
Sbjct: 178 QQEALAKLLFQKRDVRLATYSLADEAKNQTVSPEELQSFYDAHKKQLLTPETFTVEYLVL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
              + EK+I+I+++++   Y+KNK ++ +     +  +   N+ EA+   Q L  G  F 
Sbjct: 238 TPKDVEKRIQITDEQIATYYDKNKAQFVTKGEANLAHIQVANEAEANAIAQQLNNGADFA 297

Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+           +LG       P  +  ++   L + G  +  I     Y I  V
Sbjct: 298 ALAKEKSTDKLSAAQGGNLGWAKAGTFP-QAFENAANQL-QVGQVSQPIKIDNAYHIIKV 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVS 412
            + K    +   +VK  I   +R    + +     + +         S++ ++   K+  
Sbjct: 356 IDRKAENVIPLAQVKDKITETIRKELLASEYSTVARDMANSAFENSGSLEAVA---KVAG 412

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMWVQ 467
           +D+       +      V A    E +   +F  D   +  ++ AL  G       M+V+
Sbjct: 413 LDIHKTSAFTQ----SNVPAELQHEAVEKALFESDLRQTGQNSEALDVGDSTNPRTMFVR 468

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           I +    R++ LEE  TDV+   K  K  + + S A   +     EGKN    G+     
Sbjct: 469 ISDFQAEREKTLEEAKTDVEAMVKREKAEKTLLSNAEANLAAL-NEGKNNISFGETQTLV 527

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIENGLSYVVFKVTNSKVGPV 584
                       + +         VF+ P    K             ++  +     G +
Sbjct: 528 Y----------AQAQAQQPVLAKTVFNMPKPTDKATFQIARNVKGDVIIVALDKVSDGTL 577

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            E         +     L + ++  L+ + S+ V+   + + +
Sbjct: 578 AEFKPLEPQFAEANRTILRNDLVKDLRERASIDVNAEFMDQLI 620


>gi|148244746|ref|YP_001219440.1| peptidyl-prolyl cis-trans isomerase D [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326573|dbj|BAF61716.1| peptidyl-prolyl cis-trans isomerase D [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 615

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 113/630 (17%), Positives = 262/630 (41%), Gaps = 32/630 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IR  ++ W++ + + ++ +PF ++G+S+  F+ + +  V S     +    F++ +
Sbjct: 1   MLVSIRNKTKGWISYLIIGLIIIPFALFGISEY-FTGASNIKVASFDGVDISKEEFLSEF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + +++    + +      L + IL+ +++   L+Q    +  E     +   I 
Sbjct: 60  NPQKRWLQKELDKKYDKKF--DFILKQSILNQMLNKHLLEQLSRKLSYETTTSELNNIIR 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            + LF  ++ +FS + +   L   G   ++Y     + L RT +    +     +   L 
Sbjct: 118 ANDLFK-EEGRFSLEKYKKLLRLNGYTTEKYETIKLQELRRTQIKSNLLDSAFITPSQLL 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           + ++   + R   YI++   +           +  +++  K  + APE  +I +I   ++
Sbjct: 177 RLQKLNDQKRKFSYIIIQTDNHIKEVKVDAQSVKDFYDNKKSLFFAPEQVKIEFIELSLN 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           E  KKI++S++EL   YE  +E + + E R  + ++  ++  A +    L  G  F++LA
Sbjct: 237 EIAKKIKVSDNELFNFYENEQENFTTEEERQAQHILLTDELTAQKVVTLLDNGGDFVKLA 296

Query: 301 EEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           ++  +         +LG F++  +        +F++ K G+ + ++   FGY I  ++NI
Sbjct: 297 KQYSQDSGSKDDAGNLGFFTRGIMV-PEFEKKVFAM-KSGEVSDLVKSKFGYHIIKLNNI 354

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           K     SF   K++I +     +A +      ++L   LA  TS+++I  +  +    L 
Sbjct: 355 KVKTLKSFDIAKQEILDLYIQKQAQKVFYNLTEQLA-SLAYETSLEKIVDQMDL---KLQ 410

Query: 417 LVDFAGK--DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           + DF  K      +++    + + +L +             + L     M ++++E +  
Sbjct: 411 VSDFFDKRNTQLNQKIVTTAFSDMVLNK-------GENSEVLELSKDKLMVIRVREKLVK 463

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK-NFRDIGKNLGASLLTTNQ 533
           R +   EV +++     T+     V + A  +V       K     I             
Sbjct: 464 RQKSFSEVKSEINTHLMTLLAKTFVDNLAKNIVDLLVHNDKDTLEKIMIKNKLKWHRVGW 523

Query: 534 INRMDNENKFFGYDGISQVFSG--PVEMVKCFPIEN--GLSYVVFKVTNSKVGPVQEKDK 589
           I R  N+        +++VF+   P+     +  +N    + +V  +   K   ++  + 
Sbjct: 524 IKRDSNK---VKTTIVNKVFALAKPINSKSSYSAQNLERGNAIVIDLLGVKTTDIKIVNA 580

Query: 590 -FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                L    + ++  +++  LKSQ  + +
Sbjct: 581 VLEKSLLSFESNEVFSNILEMLKSQAEIKI 610


>gi|238026979|ref|YP_002911210.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia glumae BGR1]
 gi|237876173|gb|ACR28506.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia glumae BGR1]
          Length = 647

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 95/648 (14%), Positives = 231/648 (35%), Gaps = 45/648 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   R  +  + L+VL       G+         S+ V SV  +K+  + F +++
Sbjct: 1   MLDFFRNHQRLMMFLLLLIVLPGL-AFVGVQGFRDFFDDSANVASVDGRKITRAEFDSAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++    Q +G   +++   +    +++LD ++    L   +  + L A    V   + 
Sbjct: 60  RQQIDQARQALGARYDAKVIDTPERRQQLLDGMIEQRALADEVRRLHLTASDAAVREALL 119

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +P        D     + +   LA +G+   +Y +     L++  +    +        
Sbjct: 120 SNPIVAAMRKPDGSIDAERYTQLLAMQGMTPDQYQESIRYQLTQQQLPSNLIDSAFTPKS 179

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +         + R +  +VL      A   P++A ++ +++ +K  +  PE   I Y++F
Sbjct: 180 VARSLTDLAQQQREIQALVLKPADYAAKVQPTDAQISAYYDAHKQAFATPETATIQYLVF 239

Query: 238 -DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEAD 284
                       +  +++  Y+ N  +Y +     V  +                + +AD
Sbjct: 240 TPATAAASATPPTEADIRKYYDDNTARYRTEAQVRVSHIFIAAARGASAADKAAARAKAD 299

Query: 285 EAFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                +K     F Q+AE+  +          LG  ++      +  D      K G+ +
Sbjct: 300 RLLADVKAHPDQFAQIAEKNSQDAPSAAKGGDLGYITRGSTAGGAAFDDAAFALKPGEIS 359

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+    G+ I   +++KP+    F EVK+ IA +++   A++   ++ +     +    
Sbjct: 360 KVVESDLGFHILKATDVKPAIVKPFDEVKESIAAELKQQYAAKAFSDNSEGFSSSVYEKA 419

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            S+   + + K+    L       +        +     + L  VF  D   + ++T  +
Sbjct: 420 KSLQPTADKYKL---TLQTATVTPQPNPALPPDSPLNNAKFLAAVFAPDSVKNGNNTQAI 476

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            + + + +   +    PA    L+ +   V++     ++A+         +    K    
Sbjct: 477 DVGNNTLIAAHVMSDKPAAVPPLDAIKDAVRQKLIADESAKLAKQDGMARLAALQKSKAT 536

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN---GLSYVV 573
                       L   +I+R          D ++ ++    + +  +   +      Y +
Sbjct: 537 ---------TGFLPAEKISRTQTLG--LPPDAVAAIYKVDPKSLPAYVGVDLGANGGYAI 585

Query: 574 FKVTNSKVGPV---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           F+V           Q+       + Q+  +   ++ +  L+++  V +
Sbjct: 586 FRVNAIVAPAPADPQQLAAAQQQIAQVYAQSESEAFMKALRARAKVKL 633


>gi|254994931|ref|ZP_05277121.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
           str. Mississippi]
          Length = 630

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 129/637 (20%), Positives = 268/637 (42%), Gaps = 34/637 (5%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQELGMI 67
           R       L  +   F+       L     +S   V  VG   +    +  +++ EL  I
Sbjct: 4   RNVFVGAVLAAVLCAFVFVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELSYI 63

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
              +   ++ +  R  G+ +  L  +V    L++F +++ L   +  +   I   P+F  
Sbjct: 64  ESLVHQKLSEDDMR-FGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMFQD 122

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV--GGMRPS---NLLLDQA 182
           K  K     F   LA  G+ E  YI      L    +        G   S   +      
Sbjct: 123 KSGKLDEQRFKDLLADAGMTEASYIGKVRGSLPAFVLSECIFPRSGEVYSQYYDGFAQDV 182

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN--YRAPEYKRISYILFDVH 240
            R   ++R+VD + ++   V   + P+++ L   + +   N     PEY+   Y++    
Sbjct: 183 LRGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSAEYMIVSED 242

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +   ++  SNDE+++E + ++      + R V  LVFP++ EA  A++++K+GK F  + 
Sbjct: 243 DALDEVTASNDEVESEIKNSELH----DQRDVLNLVFPSESEASAAYKAIKEGKAFEAVV 298

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           ++ G ++ +++L + +KE +P + + +++F L  +G+ + V     G+ +  + +  P  
Sbjct: 299 KDLGTTVEEVTLRNVTKELLP-IEVRNTVFDL-NEGEVSGVFRSVVGWHVMKILSKHPIS 356

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSID-LPLV 418
               +++K+ +A  ++  KA E      ++  E ++ G  S  E++   K  +I  L   
Sbjct: 357 AKDLKKLKEKVAMSIKRQKARELFSASIRKANEMISHGATSFSEVADVFKKPAIGALKDF 416

Query: 419 DFAGKDVKGK-----EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
           D  G+D  GK     E ++ P     L  +          H V++ + +Y  V +    P
Sbjct: 417 DSNGQDSTGKSHTYAEESSFPGIVGALPPLAFSSQVGKPSHFVSIGN-AYFSVIVTGVTP 475

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
           +R R  +E  + +   WK      E+   A+ L  +  K G+N    G  +G +      
Sbjct: 476 SRTRTFDESKSLLLDKWKNAFVVGEMLKLASDLTAKL-KAGENP---GSAVGIATKKNEN 531

Query: 534 INRMDNENKF--FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEK 587
           I+R++ +     +  D + QVF   +  V    I+ G + +          P     +E 
Sbjct: 532 ISRVNRKKGGSNYPEDLVDQVFEMRIGDVGEGVIDQGTNKIFIATLKDIKTPGQVNEKEL 591

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            +F ++ T      +   ++++L ++Y V ++  L++
Sbjct: 592 KEFQAHFTSSAISSIRRQLLSHLTNKYGVKINKKLLE 628


>gi|88657679|ref|YP_507533.1| rotamase family protein [Ehrlichia chaffeensis str. Arkansas]
 gi|88599136|gb|ABD44605.1| rotamase family protein [Ehrlichia chaffeensis str. Arkansas]
          Length = 634

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 130/642 (20%), Positives = 278/642 (43%), Gaps = 31/642 (4%)

Query: 5   IRKASRTWVAKIFLVVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
           I   S+ +  K  L++L     F+ +G S    S +    +  +G +K+    + +++  
Sbjct: 3   IHMKSKAFFVKPLLIILVCSLVFIAFGASFFPGSFNNEKYIAKIGHEKLSLQDYTSAYHD 62

Query: 63  ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
           EL  I   +   +  E+     +    L+ L+    L +F + + L+     +   I   
Sbjct: 63  ELRYIQHVLNRPLTEEQIAQFNIKLSTLNKLIENKVLTKFADSLNLKVGENSILNHIKSI 122

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-----NL 177
             F  ++  F    F   L+  G+ E+ YI+   K    T ++     G + +       
Sbjct: 123 KFFQDENGNFDKTKFNIGLSNAGLTERLYINKLEKAFPITMLMSCLFSGTQNTYTQYHPE 182

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKRISYI 235
           L+ Q  +   + R++D I ++      I+ P+   L + +E+ +   N   PE + I Y+
Sbjct: 183 LIKQILQNLHQARTIDVIEISPTT-NDISVPNIDELKKLYEEKRKSGNLTFPESRVIEYV 241

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
             D      +  ++ +E+  + + ++      E R +  LVF  + EA+ A ++L +G  
Sbjct: 242 TIDHENFINQTNVTQEEIDNKIKADE----LDEQRDIFNLVFSTKNEAETALKALNEGTD 297

Query: 296 FIQLAEEQG-KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           F  +       +L +I+L +  K  +P+  + + +FSL K+G+ +P++H  FG+ I  + 
Sbjct: 298 FDSIVTNIAHTTLDNITLFNIVKNTLPN-DIRNQVFSL-KEGEISPILHSMFGWHIIKIK 355

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           NI    T    E+ + IA  ++  KA++ +  + + + + +  GTS+ EI+    + SI 
Sbjct: 356 NIHKISTKDLAELSEKIAQNIKKKKATDLLYTEIQAINDKINNGTSIQEIAESYNL-SIK 414

Query: 415 LPLVDFAGKDVKGKEVAAIPYK-EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
              VD +GKD    ++  +    + ++   F     L+K       DG +  V + +  P
Sbjct: 415 TANVDISGKDPSDNKIKMLETNYDAIVLAAFSA--QLNKPSNFTDNDGYFFSVNVTKIEP 472

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL--GASLLTT 531
           +R++  +E    +  +W+    A+++S    ++V++  K G +  +I   L     ++  
Sbjct: 473 SREKTFDESKEQLVYEWQHDLKAQKLSKLTQEVVIKL-KSGIDINNIDGVLLKPNQVVYR 531

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV------KCFPIENGLSYVVFK-VTNSKVGPV 584
           N +  +DN  + +  D I+++F      +           E  +   + K + N+     
Sbjct: 532 NSVAAVDNPGQNYPSDLINEIFHLKKGEISKNYQHDISSSEQKMLIAILKDIKNADQVSN 591

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            +       +     + L + +IA+L  +YSV ++ NLI   
Sbjct: 592 VDFKNIQEKIANDNLESLKNQLIAHLIKKYSVKINQNLIDNV 633


>gi|126668935|ref|ZP_01739876.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
 gi|126626598|gb|EAZ97254.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
          Length = 624

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 104/609 (17%), Positives = 230/609 (37%), Gaps = 26/609 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R+ ++  +AKI + +L +   +WG+   +   SG   V +V  Q +    F+   
Sbjct: 1   MLQDMRENAQGTIAKIIIGLLILSLSVWGMDAIIGGFSGEPEVATVNGQDITEREFLRVV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E      ++    +        +   +L  L+    L Q  +  GL      +   I 
Sbjct: 61  QLESQNRLSRMERP-DPSLLDEDQIRVDVLQALIEEQVLAQDADRQGLALSDADIDALIT 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F   D +F+ D FV+ +   G+   E+ D   K      +    V     ++  + 
Sbjct: 120 QMPQFQ-VDGQFNRDQFVTTVRNVGMGVGEFRDAMRKQTVVNQIRAGIVASGVVTSNSIT 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  +   + R    + ++   V    + S   +  +++   + ++ PE   +SY++  ++
Sbjct: 179 RLMKIQNQTRDFRLLNISASAVADQVNVSAGDIQAFYDSNPNLFQQPEQVDVSYVVLSLN 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE----AFQSLKKGKKF 296
                I IS++EL   Y+  +      E R    ++  +  +AD       Q L  G+ F
Sbjct: 239 ALADAIVISDEELLTYYQSREADLAR-EERRAAHILVEDTADADAVVERIQQRLADGEDF 297

Query: 297 IQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             LA+E          G    F+   + D +  +++FSL + G  +  +  SFG  +  +
Sbjct: 298 AALAQELSIDTVSGEQGGDLGFAGRGVYDPAFDEALFSL-EPGTVSDPVRTSFGVHLIKL 356

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           ++I+ S   +  +V   + + +   +A E   +    L +      +++  ++   +   
Sbjct: 357 NDIRRSDVPALADVAAQLRDDLSREQAREAYAQARTTLADSAYAADNLEGPAKDLNLELR 416

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL---PDGSYMWVQIKE 470
               +   G           P+    L R    +D L+  +   L    D   +  +++ 
Sbjct: 417 QADKITRNG--------GGEPFDHAGLVRQLFSEDVLNGGYNTELIDVADNRAVVARVRV 468

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
              A    L+ V   ++ + +  KT   ++++A+++  +  + G++ +DI  +   S  T
Sbjct: 469 YREAEVLPLDGVEDAIRSNLEAEKTRTALAARASEMAAQL-QAGESLQDIADD---SWAT 524

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
            ++  R   E        +  +       V       G S VV  +     G V      
Sbjct: 525 YSEQPRSAPELGGGVMQTVYALPRPRAGDVSYGHTITGNSAVVIALDKVNEGEVNTGSTE 584

Query: 591 ISYLTQMMN 599
              L + + 
Sbjct: 585 YVQLQEFLA 593


>gi|260550156|ref|ZP_05824370.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624]
 gi|260406911|gb|EEX00390.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624]
          Length = 621

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 105/635 (16%), Positives = 222/635 (34%), Gaps = 33/635 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ L++   P  + G++      + +    +V  Q +         +
Sbjct: 1   MESFRTVIKGWLGKVLLILFLTPLALVGINGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           +        +    +        +  K LD LVS   L Q  E +G+     ++   +A+
Sbjct: 61  RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P    ++ +FS  ++ + L   G+  +  I    +  +   +   F      S + + Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSQALIASLRQDHALKMLTSTFSDYALVSKVDVMQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +           SN   T ++ K+++ ++ P    + Y++     
Sbjct: 178 IANLQTEQRTLHLASIKLDTYKTGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKKG 293
             K    ++ EL+  Y K  E       R V+ ++           QK A+E +  ++ G
Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKNAKRVVKHILITTDARDDAAAQKLANEVYAKIQGG 297

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F Q A +  +  +  + G   + Y P V   +   ++ SL K G  +  +   +GY I
Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVSSL-KNGQVSQPVKTQYGYHI 356

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
              +    +   SF+  K  +  ++   K +    +    L E +    S+D + ++ K 
Sbjct: 357 IE-AETPANQIPSFEAEKARLTAEVEKNKVATVYSDTVNSLNETIVGNDSLDAVVQQVKG 415

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             I+                 + P  +  LF    K+   +    + L +G  +WV++++
Sbjct: 416 TKIE---SLNGVTLATQNPQLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
              A  + L + + + K      K  +   +K   ++ E+  +      +         +
Sbjct: 473 YHAAGVKPLAQAMNEAKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVPFES 530

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582
                R    ++          FS P        V    + N L  V     NS      
Sbjct: 531 AGVFTR----SQGLKRAIERAAFSVPAPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAM 586

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           P  +  +      Q   + +L+    YLKS   + 
Sbjct: 587 PADQLKQLQQLYRQSRGQQILEDYSEYLKSHAKIK 621


>gi|119476198|ref|ZP_01616550.1| peptidyl-prolyl cis-trans isomerase D, putative [marine gamma
           proteobacterium HTCC2143]
 gi|119450825|gb|EAW32059.1| peptidyl-prolyl cis-trans isomerase D, putative [marine gamma
           proteobacterium HTCC2143]
          Length = 640

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 109/643 (16%), Positives = 220/643 (34%), Gaps = 43/643 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR+ S+  +AK  + ++ + F ++G+ D+L   +G + V +V   ++  +      
Sbjct: 15  MLQNIRENSQGLIAKFIIGLIILTFALFGI-DSLVGNNGPAVVAAVNGDEISLAELEQGV 73

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E   +   +G   +        L   +LD L+    L Q   D  +      +   I 
Sbjct: 74  SLERRRLLNYMGENADPSLLDDQRLRGPVLDRLIQQKLLLQAAADASVGVSDAALDQTII 133

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F  +D KFS + + S L   G +   Y    ++ L+   +     G     +  L 
Sbjct: 134 AMEQFQ-EDGKFSPERYQSILRGSGYSTAFYKQLMSQDLTVAQLNSGISGSDFVISNELS 192

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  +   + RS  Y +L    V A    S   + Q +    D Y++ E   + Y+     
Sbjct: 193 EVSKIVGQQRSFRYFILPREKVAAQVIISEEEIQQHYNDNIDKYQSEEQVMLEYVEVKTA 252

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSLK 291
           +  K +E  +  ++ EY      + + E R V  ++            ++ A++  + L 
Sbjct: 253 DFFKPVEADD--IEREYALEIAAFEADEERRVSHILIEITDDRDASEARQLAEQLAEKLT 310

Query: 292 KGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
               F  +A E  +          LG    +  P      ++F LA     +  I    G
Sbjct: 311 GDTDFATIAREFSEDPGSSSDAGDLGFTMGDTFP-PEFEAALFELALD-QISEPIQTDAG 368

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y +   + I+      F E    I  +++   A  +     + L +       +   +  
Sbjct: 369 YHLLKATEIRGVSPAPFSERGSVIEGRLQQAAAEAEFVNAVEDLRDLAFNSEGLTGPAE- 427

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465
                 DL L       +            Q+L   F  +     +    + L    ++ 
Sbjct: 428 ------DLSLTLKKSNFLSRSSATGSLANAQVLAAAFSSEVIVDGNNSDVLELAADHFIV 481

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V + +  PA+ + L +V   +  +    +        A    +E  K GK   +I    G
Sbjct: 482 VSVLKHEPAKAKPLSDVQPFIIAELSQQRATALSLELAAS-AIEAMKAGKEVAEIALEGG 540

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK-----CFPIENGLSYVVFKVTNSK 580
                   I R  +       + +  VF+ P             + NG    V ++   +
Sbjct: 541 YEWQVQQNITRSSS---VVDTNLMVAVFAMPDIHNGEVRREAVALANGD-VAVVQLEEVE 596

Query: 581 VGPVQ-----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
            G +Q     E+ +  S L +      +   +  L+S+  +++
Sbjct: 597 EGSLQQFSTAEQRELKSQLQRNNADVSMSGFLRSLRSKADISI 639


>gi|94502167|ref|ZP_01308665.1| peptidyl-prolyl cis-trans isomerase D [Oceanobacter sp. RED65]
 gi|94425692|gb|EAT10702.1| peptidyl-prolyl cis-trans isomerase D [Oceanobacter sp. RED65]
          Length = 608

 Score =  336 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 102/629 (16%), Positives = 228/629 (36%), Gaps = 31/629 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+   A+I + ++ + F ++G+   +    G      V  +++       + 
Sbjct: 1   MLQAIRDGSKGIAARIIVGLIILTFALFGIESIVALGGGEDAPAEVNGEEITLLEVQQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + ++ G   +        L +  + +L+    L Q   + G+      +   I 
Sbjct: 61  NAQKTRLQRQFGENFDPAMFDENLLRQAAVRSLIDQELLAQAATESGVYISDQDIDRLIV 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           +SP F   +  F    +   +   G     Y +   + +    V   + G    ++L  +
Sbjct: 121 QSPNFQ-VNGAFDAATYDLTIRSMGFTRMTYREAVRESIKTQQVQSAWQGTEFATDLEKE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q      + RS+ Y    + +       S+  +  ++E     +   E   + Y++FD  
Sbjct: 180 QLSLLENQIRSIKYKEYKSDNFKESVQLSDEDIQSFYEANDSRFMTTESVIVDYVIFDKE 239

Query: 241 EKEKKIEISNDELQAEYEKN-KEKYFSPEIRTVEQLVFPNQKEAD----EAFQSLKKGKK 295
           +  +++ ++ DE+Q  Y+   +E   + E R    ++     EA     EA   L +G+ 
Sbjct: 240 KLAEQVIVTEDEIQERYDAMLQESQENKEYRVAHIMLLSADDEARKTLSEAKSKLGQGES 299

Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LAE   +      +   LG F+   I +   AD++ SL + G  + ++    G  + 
Sbjct: 300 FESLAERYSEDDTSKYAGGDLG-FASATIYEPEFADAVLSL-EVGAVSDIVETRDGLHLI 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            + + +     ++ E+K  I   +   +   +  E  +  ++ +    S+  ++    +V
Sbjct: 358 KLVDTRQPEIAAYDEMKDTIEQNLVNEQIEVRYIEMLESFKDAVFASNSLQTVAEDFNLV 417

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
               P          G  +A  P      F      + +  D  + +  GS + V++KE 
Sbjct: 418 VQTSPEFTRNA----GTGIAENPVIRDAAFSDVVLYESMVSD-VIEIDAGSAVAVRLKEH 472

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
             ++ + LE V   +     + K  E   + A +  L+  + G +            +  
Sbjct: 473 NESKLKPLEVVKDQIVTTLTSQKAGELAKASA-EADLDALEAGGDIE--------GWIAV 523

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKF 590
             I R   +        +SQ F  P        +  G ++ + +VT      PV + +  
Sbjct: 524 EDITRNAEKVDSL---ILSQAFETPEGDSSLVAMRQG-NHALLQVTKVVRDVPVIDLESS 579

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
              + +    +   +     K+   V  +
Sbjct: 580 AQKIERTNAVNQYQAYFNSFKNDSDVETN 608


>gi|301632869|ref|XP_002945502.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Xenopus
           (Silurana) tropicalis]
          Length = 638

 Score =  336 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 97/547 (17%), Positives = 212/547 (38%), Gaps = 44/547 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IRK S+ +   +  +++   F++ G+    FS S S  V  V    +  S + N+ 
Sbjct: 63  MLESIRKHSK-FGMILLFLLVIPSFVLVGIDRNYFSES-SPVVARVNGHDIKQSDWDNTH 120

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E   I  +    V+++   +       L+ +V    +   ++ + + A   R+   + 
Sbjct: 121 RMESDRIRAQSPS-VDAKLLDTPQARYATLERMVRDRVMTAAVQKMHIVASDARLASALK 179

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P        D     D + + +  +G+  + +  +    L+ + V+G  +     +  
Sbjct: 180 DIPAIAALKRPDGSLDADAYRALVGAQGMTPEGFEANMRHDLAISQVLGGVLQSAFSTEG 239

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               A    F+ R +     N +       PS+A L  +++    +++ PE   + Y++ 
Sbjct: 240 QFKLAMDALFQRREIQVARFNAQDFAGKVAPSDADLQTFYQSRTAHFQQPEEASVEYLVL 299

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-- 295
           D+      I +S D+L+  Y++N+E+    E R    ++    ++A    +   K +   
Sbjct: 300 DLDAVRAGITLSEDDLRTYYQENRERLAGKEERRASHILVNATQDAPAQERETAKARAQE 359

Query: 296 -----------FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                      F  +A++     G + S   LG F++  +      D++FS+ +KGD + 
Sbjct: 360 LLAQVRQNPGGFAGIAKKNSQDSGSAPSGGDLGFFARGAMVKP-FEDAVFSM-QKGDVSD 417

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           V+   FGY I  ++++K     SF++ +  +  +++  +A  +  E  +     +     
Sbjct: 418 VVESDFGYHIIQLTDVKTPQPPSFEQARAKLEAELKQQQAQSQFTEAAEAFSNGVYEQAD 477

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+   + + K+       V           V         L  +F  +   +K +T  V 
Sbjct: 478 SLQPTAEKLKLKVQTAQHVTRTP----APTVQGPLAHADFLEALFSSESIENKRNTEAVE 533

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA------------EEVSSKANQ 505
           +  G  +  +I +  PAR    +EV   V+  +   K               E + +A +
Sbjct: 534 VGPGMRVSGRIVQYAPARTLPYDEVRDRVRTMFVAEKAQGYAVVKVNRVQPREATKQAEE 593

Query: 506 LVLEYSK 512
              +  +
Sbjct: 594 EAAQRQQ 600


>gi|114771096|ref|ZP_01448536.1| hypothetical protein OM2255_03322 [alpha proteobacterium HTCC2255]
 gi|114548378|gb|EAU51264.1| hypothetical protein OM2255_03322 [alpha proteobacterium HTCC2255]
          Length = 624

 Score =  336 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 126/605 (20%), Positives = 264/605 (43%), Gaps = 27/605 (4%)

Query: 30  LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
           ++      S  S++  VG + +P +S+  S +  +  IS++IG  + S+   + GL  + 
Sbjct: 29  IASGGVDGSRISSIGKVGEEPIPVTSYAQSLRNTIQNISRQIGRQLTSQEISAYGLQSEA 88

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
           L+N+VS A L    + + +      V  EI  +P F   D KF  + +   L   G++ K
Sbjct: 89  LENVVSSAALSNEAKRLKISVGDDLVAEEIIATPTFTSVDGKFDKEAYEFALENSGLDTK 148

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DP 208
           EY     K ++R+ + G    G +  +       +F  E RS D+  ++ + +   A +P
Sbjct: 149 EYELQTRKAIARSLIEGAVASGTKTPSSHAMTLIKFAREERSFDWASIDKKLLSTQAINP 208

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +   L   ++K    Y AP  ++++Y+L        +I +S  EL+ EY+   +++  P 
Sbjct: 209 TIDQLKAHYDKNNILYTAPLSRKLTYVLLSPEMLADRIVVSQSELKDEYKSQPDRFNKPA 268

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
            R +++++F + K A      L K +  F ++AE++G + +DI LG   K  + D  + D
Sbjct: 269 RRIIDRIIFDSVKTARTVKDQLDKEEVSFTKVAEDRGLTQTDIDLGDIEKGQL-DKDIDD 327

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
            +F+ ++ G     I  + G  +  ++ I      SF +  +++  +    ++ + + E 
Sbjct: 328 LLFNASEVG-IYGPIDTNLGPALFQINAIIDPQNTSFADAAEELTAEYVSIESRKLINEM 386

Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
              +++ LA G +++EI++     +++L  + +      G  +AA         +V    
Sbjct: 387 ITDIDDLLAQGLTLEEIAKE---TAMELEKISYDSTTENG--IAAYDGFRAEALKV---- 437

Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
                     L DG    +++ + I    R  E V   V  DW   +  + +   A+ L+
Sbjct: 438 KIGGFPELRELSDGGVFALRLDDLIEPALRPFETVKDQVATDWSASEDKKSLLKLADTLI 497

Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN 567
           ++    G+ F     +L  +  + + I R    +       + ++FS      K   I+N
Sbjct: 498 IKLDN-GETFE----SLNLNAESVSSITRNKYIDGI-PAQLLEELFSNKTG--KTSKIDN 549

Query: 568 GLSYVVFKVTNSK--VGPVQEKDKFIS----YLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
           G + ++ ++ +         E  + +S     L+  +  DLL    + LK +  V ++ N
Sbjct: 550 GDTVLLARLNDISEFNSETDESKELLSQVGIQLSNQVTGDLLRLFASALKDRDGVILNQN 609

Query: 622 LIQRY 626
            + + 
Sbjct: 610 AVNQI 614


>gi|255004191|ref|ZP_05278992.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
           str. Virginia]
          Length = 630

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 128/637 (20%), Positives = 267/637 (41%), Gaps = 34/637 (5%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQELGMI 67
           R       L  +   F+       L     +S   V  VG   +    +  +++ EL  I
Sbjct: 4   RNVFVGAVLAAVLCAFVFVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELSYI 63

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
              +   ++ +  R  G+ +  L  +V    L++F +++ L   +  +   I   P+F  
Sbjct: 64  ESLVHQKLSEDDMR-FGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMFQD 122

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV--GGMRPS---NLLLDQA 182
           K  K     F   LA  G+ E  YI      L    +        G   S   +      
Sbjct: 123 KSGKLDEQRFKDLLADAGMTEASYIGKVRGSLPAFVLSECIFPRSGEVYSQYYDGFAQDV 182

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN--YRAPEYKRISYILFDVH 240
            R   ++R+VD + ++   V   + P+++ L   + +   N     PEY+   Y++    
Sbjct: 183 LRGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSAEYMIVSED 242

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +   ++  SNDE+++E + ++      + R V  LVFP++ EA  A++++K+GK F  + 
Sbjct: 243 DALDEVTASNDEVESEIKNSELH----DQRDVLNLVFPSESEASAAYKAIKEGKAFEAVV 298

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           ++ G ++ +++L + +KE +P + + +++F L  +G+ + V     G+ +  + +  P  
Sbjct: 299 KDLGTTVEEVTLRNVTKELLP-IEVRNTVFDL-NEGEVSGVFRSVVGWHVMKILSKHPIS 356

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSID-LPLV 418
               +++K+ +A  ++  KA E      ++  E ++ G  S  E++   K  +I  L   
Sbjct: 357 AKDLKKLKEKVAMSIKRQKARELFSASIRKANEMISHGATSFSEVADVFKKPAIGALKDF 416

Query: 419 DFAGKDVKGK-----EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
           D  G+D  GK     E ++ P     L  +          H V++ + +Y  V +    P
Sbjct: 417 DSNGQDSTGKSHTYAEESSFPGIVGALPPLAFSSQVGKPSHFVSIGN-AYFSVIVTGVTP 475

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
           +R R  +E  + +   WK      E+   A+ L  +  K G+N    G  +G        
Sbjct: 476 SRTRTFDESKSLLLDKWKNAFVVGEMLKLASDLTAKL-KAGENP---GSAVGIVTKKNEN 531

Query: 534 INRMDNENKF--FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEK 587
           I+R++ +     +  D + QVF   +  V    I+ G + +          P     +E 
Sbjct: 532 ISRVNRKKGSSNYPEDLVDQVFEMRIGDVGEGVIDQGANKIFIATLKDIKTPGQVNEKEL 591

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            +F ++ T      +   ++++L ++Y + ++  L++
Sbjct: 592 KEFQAHFTSSAISSIRRQLLSHLTNKYGIKINKKLLE 628


>gi|226944452|ref|YP_002799525.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Azotobacter
           vinelandii DJ]
 gi|226719379|gb|ACO78550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Azotobacter
           vinelandii DJ]
          Length = 624

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 104/638 (16%), Positives = 231/638 (36%), Gaps = 37/638 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AKI + V+ V   + G    L S S S     V   K+  +      
Sbjct: 1   MLQNIRDNSQGWIAKIIIGVIIVLLALTGFDAILTSTSNSQNAAEVNGAKIGLAELNREV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   + Q++G   ++ +     L    L  L+    L Q  E          +   I 
Sbjct: 61  ETQRRQLLQQLGKDFDASQLNEGLLRNAALSGLIERKLLLQGAEAADFAFSQNALDQLIL 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++P F   D +F  + F   +A+ G +  ++     + +    +     G    ++  + 
Sbjct: 121 QTPEFQ-VDGRFDANRFDQVIAQMGYSRPQFRQMLEQEMLIGQLRAGLAGSGFATDREIG 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   + R  D+  L     PA     + V+  ++E++  +Y   E   + YI     
Sbjct: 180 DFVRLERQTR--DFYTLTLSADPAQVTVGDEVVQAYYEEHASSYMTSEQLVVEYIELKRD 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
               ++EI +++LQA Y++        E R    ++            + + +E    + 
Sbjct: 238 AFFDQVEIRDEDLQALYQREIANL--AEQRQAAHILLEVNDKLSEEQAKAKLEELKARID 295

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           KG+ F  LA+E  +       G    ++   + D +    ++SL K+G+ +  +   FG+
Sbjct: 296 KGEDFAALAKEFSQDPGSADKGGDLGYAGPDVYDPAFEKVLYSL-KEGEVSSPVRSEFGW 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  + +++     SF  +K+ + ++++  +  +   E  + LE      + + + ++  
Sbjct: 355 HLIKLLDVQAPEIPSFDTLKEKLVHELKAEQVEQAFVEASRDLENAAFEASDLAQPAQEL 414

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
            +     P     G    G+ + A     Q+ F     +   +    + L   + + +++
Sbjct: 415 GLQIKVTPPFGREG----GEGLTANRQVVQIAFSPEVLEQG-NNSSAIELDPDTVVVLRV 469

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
           KE         ++V   +++       AEEV  +   L+ E  +         +  G  +
Sbjct: 470 KEHKKPEQIPFDQVAGKIREQLLKKHAAEEVRVRGEALLGELRQGHTPIDQAQQGEGWHV 529

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKVG- 582
           +          + +      +   F  P       P   G+      Y + ++T      
Sbjct: 530 VEAAA-----RDQEGVDPAILQSAFHMPKPAGTDKPSFAGVELPNGDYALIRLTGVSDPS 584

Query: 583 ---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                +EK  +  +L     +    +    L+S   + 
Sbjct: 585 DALSEEEKGMYRRFLASRNGQQDFAAYRRQLQSVADIE 622


>gi|254450375|ref|ZP_05063812.1| putative peptidyl-prolyl cis-trans isomerse [Octadecabacter
           antarcticus 238]
 gi|198264781|gb|EDY89051.1| putative peptidyl-prolyl cis-trans isomerse [Octadecabacter
           antarcticus 238]
          Length = 619

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 113/621 (18%), Positives = 242/621 (38%), Gaps = 26/621 (4%)

Query: 8   ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
            ++ +   I L +LFV  + +G S          ++ +VG + +    +    + ++ + 
Sbjct: 10  KTKNFFVWIILGLLFVGLMGFGASGL---SGNLQSIGAVGDKTLSAQRYYQELQTQIRLR 66

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
           S + G  ++   A+   +  + L  +V+  +LD     +GL      +  ++   P F G
Sbjct: 67  SAQEGRTISFPEAQDAQVPSRALQIVVAERSLDNEAAILGLSVGDRVISEQVLADPNFRG 126

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
            +  F    +   L+R G+N +EY     +  +R  + G    G+   ++  +   +F  
Sbjct: 127 FEGTFDRTTYRETLSRSGMNVREYETDLREGAARALLQGAVFTGVPDPSVFGEVVAQFIR 186

Query: 188 ENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
           E R+  +  LN   V   + +PS   L   ++   + Y + E + + +        +  +
Sbjct: 187 EGRTFTWAALNAADVDITLPEPSEDDLQAHYDANPNLYTSLETRELRFAWIVPSMIQDDM 246

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGK 305
            +  +EL+ EY++  +++   E R +E+LVF N + A  A  ++  G   F QL  ++G 
Sbjct: 247 PVDEEELRLEYDERIDEFVQAERRLIERLVFANDEAAQTALDAINAGDTTFPQLVADRGL 306

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           SL D+  G  S   +   +  +++F+ ++ G  +       G  +  ++ +  +   +F+
Sbjct: 307 SLDDVDGGDVSLAQLG--AAGEAVFA-SETGGVSGPFPTDLGPALFRMNAVLAAQNTTFE 363

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +    +       +A   +++    +   LA G S+D +  +  +V  +L        D 
Sbjct: 364 QALPALRETQSAARAQRLIEDQIDPITNLLAGGASLDNLVAQTDMVLGELDFTSLTTDD- 422

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
               +AA      +       D P        L DG    V + +  P     L+++   
Sbjct: 423 ----IAAYAAFRDVAATQDVGDFP----ELAELDDGGLFAVDVIDVRPPALIPLDDIRDQ 474

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
           V   W+  +TA  V + A     +     ++F      L  + +  N I R    N    
Sbjct: 475 VVAGWEAQETAAAVIAAAEAKQAQLMSAVQDFA----FLDLNAIQENNITRRGFINGT-P 529

Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYV----VFKVTNSKVGPVQEKDKFISYLTQMMNKD 601
              +  VF   +  V+  P ENG   V    +    +S      E         + + +D
Sbjct: 530 PTFLRDVFEMEIGNVRVLPTENGAIIVRLDAITAADSSDEAYTAEVASVAESAGEGIAQD 589

Query: 602 LLDSVIAYLKSQYSVTVHDNL 622
           + +     ++ +  V V++  
Sbjct: 590 IYELYSRTVQLRTDVQVNEQA 610


>gi|294650670|ref|ZP_06728024.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292823461|gb|EFF82310.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 623

 Score =  336 bits (861), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 110/636 (17%), Positives = 228/636 (35%), Gaps = 33/636 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ LV+   P  + G+       + +    SV  Q +      ++ K
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFSGGNKADVAKSVNGQDISNKELESAIK 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                    +    +        + ++ +D LV+ + L Q  E +G+     ++   +A+
Sbjct: 61  NYKDQYLALVQG--DESLLNLSAIQERAMDALVARSLLSQQAEKLGISLSDAQLEQMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P F  ++ +FS  ++ + L   G+  +  I    +  +   +    +     S   L Q
Sbjct: 119 QPSFQ-QNGQFSQQLYENYLRSVGLTNQALISSLRQDHALKMISSSLMDNALVSKSDLQQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +           S   +T ++ K+K+ ++      + Y++     
Sbjct: 178 LANLQTEQRTLHLASIKLDDYKKGVTASTQEITDYYNKHKNEFKQVASVDVDYVVLSPAL 237

Query: 242 KEK-KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL--------KK 292
            E+  + +++ +LQ  Y    EK      R V+ ++    +  D A Q L        + 
Sbjct: 238 LEQANLAVTDADLQQAYAAFVEKQQQSVKREVKHILVTTDERDDAAAQKLINDVYAKIQS 297

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVI 350
           G  F Q A +  +  S  + G     Y P    A  D+  +  K G  +  +   +GY I
Sbjct: 298 GMTFAQAASQYSEDPSSKNQGGLVSAYAPGAFSADFDNAVNTLKNGQVSKPVKTQYGYHI 357

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
             V  +      SF+  K  +  ++  TKA+    +    L E +    S++ +++  K 
Sbjct: 358 IEVQ-VPTVNIPSFESEKARLTAEVEKTKAANLFSDTVNNLNEMVVGSDSLEVVAQEVKA 416

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             ++      A        + +    +  LF    K+   +    + L +G  +W+++++
Sbjct: 417 ARVE---SAKAITLATQHPILSDLNVKVKLFSDDVKNGDRNASSNIQLANGDSIWIKVRD 473

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
              A  + L EV T+VK      K  +   +K   ++ ++  +      +      +   
Sbjct: 474 YHSAGIKPLSEVTTEVKAKVVEQKAYKAAQAKMASILADFKTQ--PAAQVVAKSQVNFEN 531

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV------EMVKCFPIENGLSYVVFKVTNSKVG-- 582
                R    +           FS P              + N L  V     +S V   
Sbjct: 532 AGTFAR----SHGLKRAIERAAFSIPAPSKEGMWSATTAKLPNELVIVAVSNVDSSVASS 587

Query: 583 -PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            P +E  +      Q   + +L+   AYLKSQ  + 
Sbjct: 588 LPEKELLELKQLYQQFRGQQVLEDYTAYLKSQADIK 623


>gi|291287880|ref|YP_003504696.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885040|gb|ADD68740.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 633

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 111/648 (17%), Positives = 244/648 (37%), Gaps = 50/648 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP---FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  +R   +     ++ V+       F +WG+ D + S         V    +    F 
Sbjct: 1   MISSLRNKKKLITFSLWFVIAAFVGTIFFVWGVGDKVQS---QLYAAKVDGVTITDQEFR 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +  +       Q  G  ++ E  +   L+K +++ L++   L      + + A    V  
Sbjct: 58  DKVENTRNQFRQLFGNNID-EILKGDTLEKTVMETLITETLLRNEANRLNIPASDAEVAA 116

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     F   D +F   ++V  L+R  +  + +     + ++   +  +    +  S+ 
Sbjct: 117 NIQSVQAFQ-TDGQFDQQLYVQLLSRNRLTPQIFESSIRRDITLKKIEDLIRQSVAVSDQ 175

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++Q   +     ++ Y+ L   +     + ++  LT +F+++K+ YR PE     Y+ F
Sbjct: 176 EVEQEFIYQNTVATIRYLELGADNFIGNVEITDNALTAFFDEHKEQYRVPEKADFKYVTF 235

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKK 292
           D    + +   S+ E++  + +NK  +  PE      ++F      ++K A E +Q  KK
Sbjct: 236 DPETYKGEFITSDKEIENYFIQNKASFNEPERVRAAHILFRVENWDDEKAATEIYQKAKK 295

Query: 293 -------GKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
                  G  F ++AE+  +     +   LG F++  +      ++ F+    G+ + V+
Sbjct: 296 VRKEIVDGADFAKMAEKYSEDSTAQNGGELGFFTRGQMV-PEFENAAFT-TNPGEVSDVV 353

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV----KEDYKRLEEFLALG 398
              FG+ I +V    PS   +  EVK +IA  ++  K++        + YK + +     
Sbjct: 354 KTQFGFHIINVEEYIPSTDPTLDEVKDEIAALIKDQKSASSFRTHVYDTYKAILDK---- 409

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            S       +    + +  +         + +  +P   + L  +   +        + +
Sbjct: 410 -SNITAYNEQAETPLPVREIKGLTAAGNVEPLNGMPAVAKRLLALTKSE----ISQVLEV 464

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
            +   M  ++ E   +   +LE++   V  D+  VK+ E   +KA +     + E     
Sbjct: 465 GEPK-MIFEMTEKYDSYIPELEDIKEQVTADFVKVKSLELAKAKAVE-----ASELDTMD 518

Query: 519 DIGKNLGASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
           D    L  S  TT +  R D  N        +  +F              G +  + +V 
Sbjct: 519 DAANTLKESYTTTPKFKRTDPINGLGMNARLMGDIFKAEPGDFIKDVYTVGSNVYIVQVK 578

Query: 578 NSKVGPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           +     +     Q K++  S L  + +   + S +  LK+   + ++ 
Sbjct: 579 DIIKPDIATMDDQTKEQIKSSLFGVKSNQAVQSYVENLKANAKIEINP 626


>gi|165976428|ref|YP_001652021.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876529|gb|ABY69577.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 625

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 108/644 (16%), Positives = 241/644 (37%), Gaps = 42/644 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+E + + ++  V KI   ++ + F+I         V G +  V V   ++   +F  + 
Sbjct: 1   MIENMHERTKGPVFKIIFALVSLSFVI--TGIGTGLVGGGTAAVKVNGTEITQQAFNAAK 58

Query: 61  KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            ++  +++ ++G          E A+     + +L+ LV    L Q+ +++ L     ++
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI  SP+F  +D KFS+D++   L   G++   Y     + +  + +    +G     
Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNV 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
                   +   + R V     +          S   L ++++ +K     PE   + Y+
Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLTVEYV 235

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                +    +++++++++  YEKNK  Y +        +   N+ +A    + +K G  
Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295

Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F +LA+ +            LG       P  +   +  SL + G  + V++    Y I 
Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPK-AFEAAAASL-QDGQVSAVVNVDGAYHII 353

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKI 410
            V   K    +  ++VK  I   +R      +     + +       + S++ +++   +
Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465
                            + V A    E++L  +F  +   S  ++ A+  G       M+
Sbjct: 414 KVQKSAQFTQ-------QNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMF 466

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V++ +    R + LEE   +V +  K  K  + + +KA + V   ++        GK+  
Sbjct: 467 VRVSDYQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNE--------GKDEK 518

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVG 582
            S      +     E++         VFS P      V           ++  +     G
Sbjct: 519 VSFGNAQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDG 576

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            ++E         Q     L + ++  L+++ S+ V+ + + + 
Sbjct: 577 SLEEFKPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620


>gi|297569902|ref|YP_003691246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925817|gb|ADH86627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 630

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 107/644 (16%), Positives = 253/644 (39%), Gaps = 36/644 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML ++R+ +R+ + +  +V++ + F++W     +       TV +V  Q +    F   +
Sbjct: 1   MLSLLRRKARSPLIQAAVVIIILVFILWVPQ--MGGNGDPGTVATVNDQPISTREFQRRY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
              LG    +    + SE   ++GL +++L  +V    L Q     GL      +   + 
Sbjct: 59  NDLLGQYRDQFEGAIPSELIEALGLREQVLSQMVQETLLLQSARKTGLPVSSEELQQAVQ 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F  ++ +FS  ++   LA   ++  E+       L R  ++   +G  + S+  + 
Sbjct: 119 SMGEF-TENGQFSLQLYRQILAASRLSVHEFEAGLRTDLLRRKILEHLMGFAQVSDQEVR 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      +   + Y+ L      A  DP++  +  +F +    YR P   RI Y+LF   
Sbjct: 178 ERFHRDHDQVRLSYLYLRADDFRAAQDPTSEEIEAYFAEKDHRYRTPPQVRIDYLLFPAD 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------AFQ 288
           +   ++ I  ++L A YE+N++++ +PE R    ++  ++ +A E              +
Sbjct: 238 D--TEMTIEEEDLVAYYEQNRDRFDTPEQRRARHILIRSRSDAPEETRARQRQQAETVQE 295

Query: 289 SLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
             ++G+ F QLA    E   +     LG F +  + +  L +++F++ + G+ + ++  S
Sbjct: 296 LAREGQDFRQLALLYSEDRSAEDGGDLGFFRRGEMLEP-LEEAVFAM-EPGEISDIVETS 353

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
            G+ +  +  I+   T++  E + +I  ++  ++  +        + E +    S+   +
Sbjct: 354 LGFHVIKLEEIQEPQTITLAEAEAEIRREILRSRGRQMAFNRANEVYESILTTGSLARGA 413

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
               +       +   G     +  AA+    + +   F  +        ++  DG Y  
Sbjct: 414 EEGGVS------LQSTGLFTPEQPPAALRRHPEAVSSAFELNRG-ELSSIISTQDG-YAI 465

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           + ++E    +   L EVL  V+ D    + A      A +L+    +EG++ + +    G
Sbjct: 466 IYVQEREEPQVPPLAEVLDRVRADLIEEQAAMAARRAAEELLAAL-QEGQDLQHLAAAEG 524

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFS-GPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
             +  +   ++                 +      V          + V K+   +    
Sbjct: 525 YRVRESAWFSQATAAATDLPARVARTGLTLTKENPVPGTVQSANDRFYVIKLQQRRTADE 584

Query: 585 QEKDKFISYLTQ----MMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +   ++   +         + ++D+ I +L  +  +TV +  ++
Sbjct: 585 ELFQRWAEPIENDLLMAKQEAMIDTWIQHLLQEAKITVSEGTLR 628


>gi|110834075|ref|YP_692934.1| peptidyl-prolyl isomerase [Alcanivorax borkumensis SK2]
 gi|110647186|emb|CAL16662.1| peptidylprolyl isomerase [Alcanivorax borkumensis SK2]
          Length = 643

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 118/650 (18%), Positives = 249/650 (38%), Gaps = 41/650 (6%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++  R+  R  V K+ L  + +PF+I G        S    V  V   K+         +
Sbjct: 1   MQEFRRFVRGPVGKVLLAAIILPFVISGFYGYFVGGSTGDVVAEVEGSKITRGVVNQRVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           +   M+ ++   + N     S    + +LD +V+   +    E   +     +V  +I +
Sbjct: 61  RVRNMLREQSPNM-NPALLDSFVRPEMVLDGIVNEQLILSAAEQSNMVFSEKQVAADIYK 119

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            PLF   D KFS   F   L   G+N + Y+    + + +      F+       L L++
Sbjct: 120 VPLFQ-VDGKFSEQRFERELRARGMNPQTYVQGLRQDMLKEQFRAGFMQTDFSLPLELNE 178

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
            +R   ++R + Y+ L+   +      S+  +  +++  +  +  PE  ++SY+     +
Sbjct: 179 QRRLGEQSRDIRYVQLDIDSLRKQFTVSDEDVKAFYDDNQGEFMRPEEFKVSYVELSADK 238

Query: 242 KEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEAD---------EAFQ 288
              ++ ++++E++AEY+  K            R V  ++     + D         EA +
Sbjct: 239 YTDQVSVTDEEVEAEYDVRKSIMEEAGAGDARRHVSHILIELNDDRDLDQAKARAREAAK 298

Query: 289 SLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           ++  G  F  +A +    L    S   LG  SK  +P+  +  +I  L+  G  +  +  
Sbjct: 299 AIADGASFADVAAQYSDDLGSAQSGGELGVVSKGALPE-EMETAIAELS-PGTVSAPVVT 356

Query: 345 SFGYVIAHVS-NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             G  +  V+     +   S  ++   I   +   +A   + ED  +LEE L     +  
Sbjct: 357 DAGVHLIFVTQEDTATALPSLADLSDQIRADLTKARAESLLNEDVSKLEELLYEHPDLQS 416

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
            + +  +  +    +D A  +       ++P  +Q L     +    + D  + +    Y
Sbjct: 417 PAEQVGVSVVTTDWIDLAAANAP----LSLPQVQQALNSEQVRQQGHNSD-LIEVDSTHY 471

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           + V+I E  PA    L+EV   +++  K     ++V   A ++  +  +EG N   +   
Sbjct: 472 IAVRIAEDKPAEPMPLDEVSFAIRERLKGELAMDKVQQLA-KMAEKTIEEGGNLESVATL 530

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM------VKCFPIENG--LSYVVFK 575
               +     + R   E      + ++  FS P         V    + NG  ++Y V  
Sbjct: 531 FDVEIAEQEGLQRGGAEPAM---EVVNGAFSAPRAAEGDASPVSITRLGNGSVVAYQVTS 587

Query: 576 VTNSKVGPVQEKDKFIS--YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           V +    P+    +  +   L  +  +     V+A L+ +  V ++ + +
Sbjct: 588 VADGNAEPLSAAQQQAALIELGNVEGQRNFRQVVALLRDEGDVELYPSRL 637


>gi|120554754|ref|YP_959105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
 gi|120324603|gb|ABM18918.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
          Length = 617

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 119/638 (18%), Positives = 250/638 (39%), Gaps = 40/638 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  +++ +AK+ + +L +   IWG+   +   +G   V +V  Q +    F+ + 
Sbjct: 1   MLQDIRDNAQSTIAKVIVGLLIISLSIWGMDAIIGGFTGEPEVATVNGQDITEREFLRTV 60

Query: 61  KQE-LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           + E    + Q      +        + + +LD L+  A L Q  +  GLE     +   I
Sbjct: 61  QMESQQRLMQMENR--DQSLLDEDQIRRDVLDALIREAVLTQDAQSQGLELTDADIDSLI 118

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            + P F   D +F+ D FV+ +   G+   E+ +   K      +          +    
Sbjct: 119 TQMPQFQ-VDGQFNRDRFVATVRNVGMGVAEFRESIRKNYVVNQIRAAIAQTGVVAPENA 177

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                   + R    + L+   V    D + A +  ++++  + +R PE    +YI    
Sbjct: 178 AHLLAIQNQTRDFRVLTLDGSSVQDQVDVTEADVQAYYDENLNQFRQPEQVDAAYITLSQ 237

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE----AFQSLKKGKK 295
               + IE++ DEL+    + + + ++ E R    ++     E         Q L+KG+ 
Sbjct: 238 GALAESIEVAEDELRTY-YEERAEEYAREERRAAHILVEAGDEGQATLATIQQRLEKGES 296

Query: 296 FIQLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LAEE       +     LG   +  + D +  D++F L ++G+ +  +  SFG  + 
Sbjct: 297 FAVLAEEYSVDTVSAQEGGDLGFAGRG-VYDEAFEDALFGL-EEGEVSGPVETSFGLHLI 354

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            +  ++ S   +F E+++D+  ++  TKASE+  E   +L +       +   +    + 
Sbjct: 355 KLEEVRRSDVPAFDELREDLRLELARTKASERFAEVRSQLADAAYAADDLAGPAEELGLE 414

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL---PDGSYMWVQI 468
              +  V   G         A P+    L R    +D L   +   L    D   +  ++
Sbjct: 415 IRVVEGVSRDG--------GAAPFDHAGLVRQLFSEDVLEGGYNTELIDVGDNVSVVARV 466

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
           +E    R   L +V  ++++  +  +T + ++++ ++LV +  + G +  ++G      +
Sbjct: 467 REYHEPRQLALADVEPEIRRILERTETRDALAARVDELVAQL-ESGTSADELG------V 519

Query: 529 LTTNQINRMDNENKFFGYDGISQVFS-----GPVEMVKCFPIENGLSYVVFK-VTNSKVG 582
               Q               + +VFS     G    V      +  + +V   V   +V 
Sbjct: 520 GEWQQFEDQGRSVSGLSPRVVQEVFSMARPDGDSPTVGRAVTADQAAVIVLTGVNEGEVD 579

Query: 583 PV-QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
               E  + + +L Q+  +    +   YL++   V  +
Sbjct: 580 QEGAEYQQLMRFLAQLEGQREYTAYQQYLRNTAEVERN 617


>gi|73666959|ref|YP_302975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia canis str.
           Jake]
 gi|72394100|gb|AAZ68377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia canis str.
           Jake]
          Length = 630

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 128/642 (19%), Positives = 271/642 (42%), Gaps = 37/642 (5%)

Query: 8   ASRTWVAKIFLVVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
            S+    K  L++L     F+ +G S    + +    V  +G +K+    + N++  EL 
Sbjct: 2   KSKGLFVKPLLIILVCSLVFIAFGTSFFPGNFNNDKYVAKIGHEKLSLQDYTNAYHDELR 61

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
            I Q +   +  E+     +   +L+ L+    L +F + + L+     +   I     F
Sbjct: 62  YIQQILNRPLTEEQIAQFNIKLSVLNKLIENKVLTKFTDSLNLKVGEKSILSHIKSIKFF 121

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-----NLLLD 180
             ++  F    F   L+  G+ E+ YI+   K      ++     G + +       L+ 
Sbjct: 122 QDENGNFDKTKFNIGLSNAGLTERLYINKLEKAFPVAMLMSCLFSGTQNTYVKYHPELIK 181

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKRISYILFD 238
           Q  +   + R++D I ++      I+ PS   L + +E+ +   N   PE + I Y+  +
Sbjct: 182 QILQNLHQARTIDLIEISPST-NDISVPSLDELKKLYEEKRKSGNLTFPENRVIEYLTIN 240

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                 +I ++ +++    +   +     E R +  LVF  + EA+ A ++L +G  F  
Sbjct: 241 YKNFINQINVTQEDI----DNEIKTEELDEQRDILNLVFSTKNEAEAALKALNEGTDFND 296

Query: 299 LAEEQGKSLSD-ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +      + +D I+L +  K  +P+  +   +FSL K+GD +P++H  FG+ I  + +I 
Sbjct: 297 VVTNIAHTTTDNITLNNIVKNTLPN-DIRGKVFSL-KEGDISPILHSMFGWHIIKIKSIH 354

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
              T   QE+ + IA  ++  KA   +  + + + + +  G S++EI++   + SI    
Sbjct: 355 KISTEDLQELSEKIAQNIKKKKAISLLTTEIESINDKINNGASINEIAKLYNL-SIKTIN 413

Query: 418 VDFAGKDVKGKEVAAIPYK-EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            D +GKD+ G ++       + ++   F     L+K       D  +  V + +  P+R+
Sbjct: 414 TDISGKDLSGNKIKMSESNADAIILAAFSA--QLNKPSNFTDNDDYFFSVNVTKVEPSRE 471

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           +  +E    +  +W+    ++++S    ++V++     K+  DI    G  L +   + R
Sbjct: 472 KTFDESKEQLVYEWQNDLKSQKLSKLTQEVVVKL----KSGIDIHNIDGVLLNSNQMVYR 527

Query: 537 M-----DNENKFFGYDGISQVFSGPVEMV------KCFPIENGLSYVVFK-VTNSKVGPV 584
                 DN  + +  D + ++F+     +           E  +   + K + N+     
Sbjct: 528 NSVAAVDNPGQNYPTDLVDEIFNLKKGEISKSYQSSTNSSEQKMLIAILKDIKNADQVSN 587

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
            +       +     + L + +I YL  +YSV ++ NLI   
Sbjct: 588 VDFKNIQEKIANDNLESLKNQLITYLTKKYSVKINQNLIDNV 629


>gi|212703745|ref|ZP_03311873.1| hypothetical protein DESPIG_01793 [Desulfovibrio piger ATCC 29098]
 gi|212672827|gb|EEB33310.1| hypothetical protein DESPIG_01793 [Desulfovibrio piger ATCC 29098]
          Length = 650

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 230/658 (34%), Gaps = 42/658 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++++  K+   ++ + F+ WG+   L     S+ V  V  + +    F  ++
Sbjct: 1   MLDYIRSNAQSFGVKVAFAIIILVFMFWGVGS-LTDGGSSNVVAKVNGEAITAQQFEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++      +     +  E      L +++L+ L+S   + Q    +G+      +   ++
Sbjct: 60  QRAAEYAMRNDPS-LTREALVQQKLGRQVLNELISAQLIRQEAARVGMTVSPEEMHYVVS 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F     KF  + +   +  + ++  EY       + R  V+    G    +     
Sbjct: 119 KLPAFQDAQGKFDPEAYKRAIEAQRMSVAEYEQGLADSILRDKVMRTVAGSAWAAGGEAR 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +   F  + R+V+Y+ L      A   P+   L  W+E +K    +     + Y+     
Sbjct: 179 KYYDFLTQQRAVEYLYLPAADFAASVKPTEEELGAWYEAHKAELASQPRVEVEYVAVAPE 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--QSLKKGK---- 294
              +   +S +     YE NK+++  PE   V  ++ P  + A EA   Q+++K      
Sbjct: 239 SLVRPESVSAEAALKWYEANKQRFRQPEQVKVAHILVPLAENAPEAAVKQAMEKAARIRS 298

Query: 295 -----KFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
                 F  +A+       +     LG   +         D+ ++L + G  +  +   F
Sbjct: 299 EAEKGDFAAVADANNGPNAAGPGGELGWIQRGQTVKP-FEDAAWAL-QPGQISEPVRSQF 356

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G  I  + + K +    F EV+ ++   +   +  EKV +    L         + E + 
Sbjct: 357 GLHIIKMEDRKDASVQPFAEVEAEVRATLAKQEGVEKVNDVLDSLIGDNINNRPLQESAA 416

Query: 407 REK----IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
           R          D PL+      + G+                    P +     AL  G 
Sbjct: 417 RAGSYKDADGKDQPLLKAERTGLVGQAELQKALGISDEMAASLMKAPANSPVDTALEAGD 476

Query: 463 -YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
            Y+ V++  S P+    L++    V K     K  +    KA  L    +       D  
Sbjct: 477 RYLVVRVLTSEPSTTPSLDQARDRVMKALVAEKALQAAMGKATALRKAMTDGQLPAEDAA 536

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEM-------VKCFPIENGLSYVV 573
           +      + +  + R      F     ++Q +F    +        V      +    ++
Sbjct: 537 R------VQSADLTRDGALAGFVPNPVMNQVIFRAAPQTWIDQAFSVYEQEDSSKCGALL 590

Query: 574 FKVTNSKVGPVQ---EKDKFISYLTQMMNKD-LLDSVIAYLKSQYSVTV-HDNLIQRY 626
            +VT  +          +  ++ L Q    + +  + +  L+ +  + V +  +++  
Sbjct: 591 CRVTAVEQPKADGWAGMENLLTELVQRKRVEGMYQTFMRMLEQKAKIEVYNSRVLESA 648


>gi|332524209|ref|ZP_08400435.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332107544|gb|EGJ08768.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 635

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 111/653 (16%), Positives = 236/653 (36%), Gaps = 51/653 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL-FSVSGSSTVVSVGRQKVPFSSFINS 59
           M + +R  SR  +  +  +++F  F+ +G+     F+  G+ TV  VG Q +  + +  +
Sbjct: 1   MFDFVRNHSRLVLGILV-LLIFPSFIFFGVQGYSRFTEGGAVTVAEVGGQAISRAEWDAA 59

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +  +  + ++    ++ +   +  L ++ LD LV    L        L  D  R+    
Sbjct: 60  HQNNIERLRRQRPE-LDPKLLETPELKRETLDGLVRDRVLMATARQYHLVPDDARLQRLF 118

Query: 120 ARSPLF---HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P F      D   + +     LA +G++ + +     +      V+G          
Sbjct: 119 VTDPQFAGLRNPDGSVNRE----ILAAQGMSVEAFEQQLRQEFGMQQVLGAVAQSSFTPP 174

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +   +     + R V     +     A A P +A L  ++E +   +RAPE  +I Y++
Sbjct: 175 AVAATSLDALLQRREVQIQRFDAAAYRAQATPGDADLQAYYEAHSGEFRAPEQAQIEYVV 234

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG--- 293
            D+    K + +  ++L+  YE+N  +Y   E R    ++      A    +   K    
Sbjct: 235 LDLAALAKDVAVPEEDLRRYYEENASRYTQAEERRASHILIRVDPSAPADEKKAAKARAE 294

Query: 294 ----------KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP 340
                       F ++A +  +     S G    F    +      D+++++ K G+ + 
Sbjct: 295 QLLAEVRRSPNSFAEVARKNSQDPGSASRGGDLDFFGRGMMAKPFEDAVYAM-KTGEISN 353

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           VI   FGY +  ++ ++     +F  V+ +I  ++R + A ++  E  +     +     
Sbjct: 354 VIETDFGYHVITLTGLRGGQKKAFDTVRAEIEQEVRRSLAQKRYAEAAETFTNTVYEQSD 413

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
           S+  +  + K+      ++        G   +A     +LL  VF  D   +K +T  V 
Sbjct: 414 SLQPVIDKLKLQKQTATVLRQPAPGASGALASA-----KLLDAVFSDDVVRNKRNTDAVE 468

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           +     +  +I    PAR   L EV   V++     K+A    ++            K  
Sbjct: 469 IGQNQLVSARIVTHSPARTLPLAEVRDQVREAVVAQKSAALAKAEGA----------KRL 518

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
             + K+   +L  +  ++R   + +      I  V     + +      +     Y V +
Sbjct: 519 EALKKSPNEALPISLTLSR--AQPQGAPRAVIDAVLRADTKQLPAIVGVDLGSQGYAVVR 576

Query: 576 VTNS--KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
           V+    +             L Q        + +  LK +    + +  +Q  
Sbjct: 577 VSKVLQREADPATDAMLQQQLAQTWATAEALAYLDALKRRTKAEIKEAAVQAA 629


>gi|326795821|ref|YP_004313641.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas
           mediterranea MMB-1]
 gi|326546585|gb|ADZ91805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas
           mediterranea MMB-1]
          Length = 613

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 91/622 (14%), Positives = 219/622 (35%), Gaps = 45/622 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S++ + KI +  + V F ++G+   + S + S TV  V  +++  +  + + 
Sbjct: 1   MLQDIRDRSQSLIVKIIIGFIVVTFALFGVDALVTSFNSSETVAEVDGKEITRTQVLQTA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   +   +G  ++        L ++ LD+L+  A L    + + L     ++   + 
Sbjct: 61  DTQRRQLISMMGNNIDPSLLDENLLQRRALDSLIELAVLKNQADGLELGVSDAQIDSLLV 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +  +   D  F  + +++ +   G     Y +   +    + +              ++
Sbjct: 121 SAEQYQ-TDGVFDQNKYLNAIRSLGFTPLAYKERIKESYVLSQLRSAVTESEFALPSQVN 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                  + R+ +Y+  +        D ++  L  +++ ++ ++ +PE  +ISY++    
Sbjct: 180 AISELQNQKRTYEYVQFSLADQTEQTDVTDGELQAYYDDHQQDFVSPEQVKISYVVVTTD 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----QKEAD----EAFQSLKK 292
                +++++ ELQ  Y+       + E R    ++       + EA     E    L  
Sbjct: 240 ALATNVKVTDQELQNAYQTEIAGLDT-EERDASHILIDTSIRSEDEAKSIIAEIQSKLAS 298

Query: 293 GKKFIQLAEEQGKSLS----DISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSF 346
           G  F  LA+E             LG  +K  + +   S  D++F++   GD        +
Sbjct: 299 GDSFASLAKEYSDDPGSKDVGGELGFVAKGALGESFESFEDALFAM-NVGDIQE-AETQY 356

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G  +  ++ I  +   + +E++  +   +   KA + + +  + + +       +  ++ 
Sbjct: 357 GLHLIKLNAIDKADAPTLEELRDQLTADITARKAKDALLDAQENIADLAYASDELAPLAD 416

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
                 +D+   D+ G+      + + P      F    K D  + D  + L D   + +
Sbjct: 417 EY---GLDVETSDYFGQSGGNDVITSEPTVISAAFSDSVKQDGQNSD-PIELGDDKIVVI 472

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
            + +         E+  T++       K    +S KA +L  +             +  +
Sbjct: 473 HVDDHKAESPLSFEDAKTEIASTLIKEKAESIISEKAAELFAD------------ASQDS 520

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL----SYVVFKVTNSKVG 582
                    R  +E           VFS P  +                V  K+ +   G
Sbjct: 521 GWEKVELAPRGQDEVTSL-------VFSMPHPVEGTVQTAVKSLVNGDVVALKLLDVVAG 573

Query: 583 PVQEKDKFISYLTQMMNKDLLD 604
                       T+ + ++   
Sbjct: 574 ESDSDSTRTDAYTRFVTQNQAQ 595


>gi|126731274|ref|ZP_01747081.1| hypothetical protein SSE37_06394 [Sagittula stellata E-37]
 gi|126708185|gb|EBA07244.1| hypothetical protein SSE37_06394 [Sagittula stellata E-37]
          Length = 615

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 113/598 (18%), Positives = 250/598 (41%), Gaps = 26/598 (4%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
               S++  VG  ++P S +  + +QE+  +  + G  ++ ++AR++G+   +L  +V+ 
Sbjct: 33  GGSVSSIGKVGEAEIPASDYFRAMQQEIRAVQTQTGQALSMQQARAMGIPDMVLSRVVTT 92

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
           A L+     +G+     R+  ++   P F G D  F  + +   L   G +E+E+ +   
Sbjct: 93  AALENEAAQLGISVGDERLAQDLREIPAFQGIDGSFDRESYRLALQGAGFSEREFEEQLR 152

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQ 215
              + T +      G+    +       +  E R+  +  L +  +   +  P++  L  
Sbjct: 153 AESASTLLQNAIQAGVALPPVYAQTLVSYTGERRAFTWAELGSEQLSTGLPIPTDEELQT 212

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++++  D Y  P  ++I+Y           +E+  D L+A Y++   ++  PE R VE+L
Sbjct: 213 FYDENIDRYTRPTTRKITYAWLTPAMIVDTVEVPEDMLRATYDERSSEFNLPERRLVERL 272

Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           V+ +++ A +A   +  G   F  L  E+G  ++D  +G  ++  +   +  +++F+ A+
Sbjct: 273 VYSSEEAAQDAAARVANGDVPFETLVRERGLDIADTDMGDVTEASLG--AAGETVFA-AE 329

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            GD         G  +  V+ +  +   SF+E    + + + + +A   ++    +L++ 
Sbjct: 330 VGDVVQ-APSDLGPALYRVNAVLAAQDTSFEEAIPQMRDTLALAQARRVIEGLANQLDDE 388

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           LA G ++++++       ++L  +D+      G  +A               D P     
Sbjct: 389 LAAGATLEDLA---GDTEMELGQIDWTSASSDG--IAGYEAFNTAAAEAETGDYP----A 439

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
              L DG    +++ E   A      +V   V++DW+    A  ++ +A  L  + S + 
Sbjct: 440 IAELGDGGLFALRLDEIQEAAPYPFADVRARVEQDWEADARATALADQAEALANQLSGD- 498

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
             F D+      S      + R  N++       ++QVF+             G +YVV 
Sbjct: 499 TGFDDLNLR---SRTVAEGLTRNANDDNV-PPAVLAQVFTMSEGDAAAVKGA-GTAYVVR 553

Query: 575 KVTNSKVGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
                +V P  E     +  F     Q +++DL  ++   ++++  V +    +   L
Sbjct: 554 LDDIIEVDPEDETVRQFRQLFAQQADQDVSQDLFRALAQDIQARAGVEIDQAAVNAVL 611


>gi|58584787|ref|YP_198360.1| parvulin-like peptidyl-prolyl isomerase, PPID [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58419103|gb|AAW71118.1| Parvulin-like peptidyl-prolyl isomerase, PPID [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 602

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 127/624 (20%), Positives = 267/624 (42%), Gaps = 32/624 (5%)

Query: 8   ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
             + +  K+  V+L    +  G+ + L   +    V  VG++ +    +   ++     I
Sbjct: 2   NVKNFFTKVTAVILTCLLIFTGVGNFLSDENKKEEVARVGKEVITLGEYKLLYQSYGKQI 61

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
           S   G  ++ E+ + +  D  +L+ L+    L   I D+GL      +   I  +  F  
Sbjct: 62  S---GSDISEEQVKRLKYD--LLNALIEQKLLFNLISDLGLVVGEESIKDHIRNTKYFQN 116

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKR 184
              KF  + F   L    + E EY+    K+L     +        P      + +Q  +
Sbjct: 117 DKGKFDKEKFHEALNSLHMTEGEYVAKLEKILPAIMFITSLFHDNYPVTFGEKIDEQIYK 176

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
              + R V+ + +    V  + +P + VL   +EK K ++  PEY+   YI         
Sbjct: 177 NRHQTRVVNIVKITQNAVTNVTEPDDRVLLDLYEKNKSHFYYPEYRTAQYISLGQKYFAN 236

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303
           +I+IS+ E+    ++ + K    + R +  L+F  ++EA+ A +  ++ K  F Q+ E+ 
Sbjct: 237 QIQISDREVDDIIKQQELK----DQRDIFNLIFYTKEEAETARKEFEEDKVSFEQIVEKF 292

Query: 304 GKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           GK+ L +  + + +K+ +P+  + + +F+L K G+ + V+  SFG+ I  V +       
Sbjct: 293 GKTKLEETRINNITKDSLPE-DMREKVFAL-KVGEVSEVLASSFGWHIIKVDSAHQISNE 350

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
           +  ++KK+I   +   K+ EKV +   ++   +  G +++ IS    +    +  +D +G
Sbjct: 351 NLVDLKKNIKLVLTNQKSFEKVNDFINQVNYKIYNGATIEGISSEYNLPMQTIGPIDASG 410

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
           KD  G  V +      L+  +F ++    K +   + D + + V+I   +P + +  EE 
Sbjct: 411 KDQSGNSVES---SSDLVSFIFSREKD-QKGYFKGVGD-AVVSVKIVNIVPPKLQSFEEG 465

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
                  W+     E++     ++     ++     D+ K  G  L+   QI+R +   +
Sbjct: 466 KALAIDLWRNGFIKEKMFKIGQEVAARLKEK----ADLKKTQGIELIKDQQIHRNEVGQQ 521

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYV--VFKVTNSKVGPVQEKDKFISYLTQMMNK 600
            + +  I ++F+         P+++    +  V K   S  G +   D     +      
Sbjct: 522 SYPFSFIEEIFNMKTIGSVTDPVQHNNEVIVGVLKEMYSSSGKLNTFDTGKRVMI----- 576

Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQ 624
            L + +I+YL+S+Y V V+  ++ 
Sbjct: 577 SLKEQLISYLESKYKVKVNHAILD 600


>gi|92114164|ref|YP_574092.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
           salexigens DSM 3043]
 gi|91797254|gb|ABE59393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
           salexigens DSM 3043]
          Length = 602

 Score =  333 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 112/633 (17%), Positives = 242/633 (38%), Gaps = 49/633 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59
           ML+ IR+ S+ WVAK+ +  + V F ++G    +    SGS  + +V  + +   +    
Sbjct: 1   MLQRIREGSQGWVAKMIVGAIIVTFALFGAESLVGVFTSGSDDIATVNGEPIKRQAVELQ 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            ++ +          V  E+ R   L  +++D +++   LDQ+ E+ G+     ++   I
Sbjct: 61  VQRGIRS------GQVPPEQERE--LRAQVIDQMITTELLDQYAEEGGMHLSDAQIDQLI 112

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F   +  FS ++F +RLA  G     +     + + R  +               
Sbjct: 113 VSRPEFQDSEGNFSQELFSNRLASAGYTPLSFRRELRRDMKRQQLQQGVALSTFVLPGEA 172

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           ++ +    + R   Y  L    + A  + + + +  ++E ++D Y+ PE  +++Y++ + 
Sbjct: 173 ERLQALQNQTRDFRYASLTADDLEAPVEVTESDMQAYYEAHQDQYQRPEQVKVAYVVLNQ 232

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSL 290
            +  + +++   +L+  Y   +E       R V  ++                +EA   L
Sbjct: 233 QDVAQDVDVDEQQLRDAYAAERE----DAPREVAHVMVDYGDERSRDEAMARIEEAQGQL 288

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            +G  F  +A E            +LG  ++ +  D +  D+ FSL + G  + V+    
Sbjct: 289 AEGADFADVAAEYSDDATTANKGGNLGVINRGFFGD-AFDDAAFSLDE-GQVSSVVDSGD 346

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G  +  V++I      SF E + ++A Q+R+  + +   E  ++LE+       +  ++ 
Sbjct: 347 GLHLIKVTDI---DMPSFDEQRDELAEQVRLDNSRDAFNERAQQLEDRSYAADDLQSVAD 403

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
                 +D+   D+   D   + V A P      F     ++  + D  + L D     +
Sbjct: 404 EL---GLDVQTSDWVSAD-SAEGVLAEPGMMDAAFSEDVLENGYNSD-VIELDDQRRAVL 458

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           ++ +   A    L+EV   V++  + VKT E + ++A +LV                  A
Sbjct: 459 RVVDHREATTLSLDEVSERVREATREVKTREALEARAERLVASLRNG-----------DA 507

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPV 584
             L   Q++             + Q F  P                  + ++T  + G  
Sbjct: 508 VSLDWQQVDDATRRGDAAPEPVLRQAFRLPHPNDGQTYGHAMTDAGVAIIELTQVRDGDA 567

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +E         ++  +  +  +   L+    + 
Sbjct: 568 EEAGNSARMAERLRAQAAIQGLTESLREDAEIE 600


>gi|118602656|ref|YP_903871.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567595|gb|ABL02400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 615

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 112/627 (17%), Positives = 251/627 (40%), Gaps = 26/627 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IR  ++ WVA + + ++ +PF+++G+S+    VS    + SV    +  + F+  +
Sbjct: 1   MLGSIRNKTKGWVAYLIVGLITIPFVLFGISEYFTGVSN-IVIASVDGVDISKAEFLAKF 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   + Q++    ++E      L + IL+ ++    L+Q   ++  E     +   I 
Sbjct: 60  NPQKRRLQQELDKKYDTEF--DAMLKQSILNQMIDKYLLEQLSNELSYETTANELNTIIQ 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            + LF  K  +FS + +   L   G    +Y     + L+ T +    +         L 
Sbjct: 118 ANNLFKKK-GRFSLEKYKQLLRLNGYTTIKYEAIKLQELTETQIKYNLLDSAFVIPTELA 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           + ++   + R   YI ++              +  ++   K  + APE  +I ++   ++
Sbjct: 177 KLQKLNDQQRQFSYIAIHADDYVKEVKVDVQSVKNFYNNKKALFFAPEQVKIEFVELSLN 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +  K I++S+DEL   Y+  +E++   E R  + ++  ++  A +    L  G KF +LA
Sbjct: 237 KISKNIKVSDDELFNFYKDEQERFTREEERQAQHILLEDKSTAQKVIALLNNGGKFAKLA 296

Query: 301 EEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           E+  +  +       LG F++  +        +F++ K  + + ++   FGY I  ++NI
Sbjct: 297 EQYSQDTASKANAGDLGFFTRGVML-PEFEKKVFAM-KLNEVSDLVKSEFGYHIIKLNNI 354

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           K      F  VK ++ +    T+A +      ++L   LA   +++EI  +  +      
Sbjct: 355 KVKTLKPFDAVKSELLDLYTQTQAQKVFYSLTEQLTH-LAYEVNLEEIVDQMNLKLQVSD 413

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
             D     +  +++    + + +L +             + L     M ++++E +  R 
Sbjct: 414 FFDRKNTQLN-QKIVVTAFSDTVLNK-------GENSEILELSKNKLMVIRVREKLAQRQ 465

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           +   EV  ++     T+     V + A  +V       K+      N   + L  N ++ 
Sbjct: 466 KSFIEVKDEINAHLMTLLAKIFVDNLAKNVVDLLVHNDKDTLKKLMNK--NKLKWNHVDW 523

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTNSK-VGPVQEKDKFI 591
           +  ++       I++VF+        F       +  + V+ K+   K            
Sbjct: 524 VKRDSSKVKMAIINKVFALAKSTNGNFSYSAQDLDESNVVIIKLLGVKTTDTKTVNTTLE 583

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTV 618
             L    + ++  +++  LKSQ  + +
Sbjct: 584 RSLLIFESNEIFANILETLKSQAKIKI 610


>gi|254468807|ref|ZP_05082213.1| PpiC-type peptidyl-prolyl cis-trans isomerase [beta proteobacterium
           KB13]
 gi|207087617|gb|EDZ64900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [beta proteobacterium
           KB13]
          Length = 627

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 108/646 (16%), Positives = 250/646 (38%), Gaps = 44/646 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR       AK+ L ++ VPF ++G+   L S+  + TV SV   ++    F  S 
Sbjct: 1   MLETIRNGLEKKWAKVVLAIIVVPFALFGIDSYLNSMGSNVTVASVNNFEITAQDFQRSM 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                 +        +    +S    K ++D+LV    +   ++         ++   I 
Sbjct: 61  MVLQERLDA---EGQDRSILQSPEFRKSVIDSLVDSQLIKSAVDKYNFRISDDQLSTYIV 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  ++ KFS D +   +   G+  K+        ++   + G            ++
Sbjct: 118 GMPDFQ-ENGKFSQDRYDQIVQYNGLTPKKLEQQIRGDMATQQIQGTLANLTYFPKKNIE 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  +  ++ R V    +           ++  + +++E   D++  P+  +I ++++ V 
Sbjct: 177 EIAKIAYQKRHVKLYDMLLLDYEDKIKVTDDEIKEFYEANTDSFIRPDQVKIEFVVYSVA 236

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288
                + ++++E++  YE NK+ Y   E R+   ++F              +++A    +
Sbjct: 237 NIVPNVSVTDEEVKEFYEFNKQNYEGDEERSASHILFMADASQSDEEVEKVRQKASNVLK 296

Query: 289 SLKK-GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            +KK   KF + A++  +      +  SLG F +  +      +S F+L  KG+ + ++ 
Sbjct: 297 DIKKDPNKFEEYAKDLSQDPESAKNGGSLGFFKRGVMVK-EFEESAFTL-NKGEISDLVR 354

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMD 402
             FG+ I  + ++K     SF++VK  +  ++   KA E    + +     +     S+D
Sbjct: 355 TDFGFHIIRLDDVKGDQV-SFKDVKAQVKGELLYGKALEIYNTNAEDFSNIVYEQKESLD 413

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
            + ++  +   D+    +  K    +     P   + +F     D   +       P+  
Sbjct: 414 PVVKKYNL---DVQQSPWMSK-ADAENFFNNPVFSEAVFDQTIIDSKFNTPAIEVSPNN- 468

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            +  ++ +   +  + L++V  +VK   K   + E + +  N+LV       +  +D G 
Sbjct: 469 LVSARVVDFRKSEAQALDDVKDEVKSFLKKRNSQENLINDGNKLV-------EGLQD-GS 520

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSK 580
                 +    I+R D +          ++F      +  +    +    ++V K+    
Sbjct: 521 AKEPKWIDELTIDRSDKQG--LSDVIAEEIFKMNSSTLPIYSGIYDPKGEFMVIKLDKVD 578

Query: 581 VGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                 ++ + F       + K++  S +  L++   V ++   +Q
Sbjct: 579 SESILEEDVEFFNEEFMAAIEKEIEKSYVEDLRADSKVKINSKFLQ 624


>gi|149184601|ref|ZP_01862919.1| peptidyl-prolyl isomerase [Erythrobacter sp. SD-21]
 gi|148831921|gb|EDL50354.1| peptidyl-prolyl isomerase [Erythrobacter sp. SD-21]
          Length = 645

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 133/641 (20%), Positives = 250/641 (39%), Gaps = 26/641 (4%)

Query: 1   MLEIIRKASRTWV----AKIFLVVLFVPFLIWGLS--DALFSVSGSSTVVSVGRQKVPFS 54
           ML   R   +T +    A  FL ++   F    +S   A   V+G  +V  VG  K+  +
Sbjct: 1   MLTFFRNFFKTKIGLAIALAFLGLIGFAFASMDVSNTGAFGGVAGGDSVAVVGGSKISTA 60

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
               +    L    ++   V          +D+ +L+ L+    L  + E+ G  A    
Sbjct: 61  ELNEAMDNALRRAREENPDVTMQTLIAEGEMDR-VLEGLIDRYALMAWAEENGFRAGANL 119

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V  EI + P   G    F    + + L    I + +        +     V   + G + 
Sbjct: 120 VNSEIRQIPAARGPSGNFETAAYEAFLRNNSITDSQLRQQLRTTVYFQQAVFPALYGTQL 179

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
              +     R + E RS     +         DP++A L++++ + +  +  PE + + Y
Sbjct: 180 PESIARTYARSFKERRSGGIATIPAALFAPQGDPTDAQLSEFYAENRSRFVRPERRTLRY 239

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
             FD       I  S++++ A Y+ N E+Y + E R + QL+ P ++ A+     ++ G+
Sbjct: 240 ATFDSSALGGSINPSDEDIAAYYQDNAEEYAARETRNLTQLIVPTREGAEALAARVRGGE 299

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F Q A   G  L    L    +  I      ++AD+ FS ++ G  T     S G+ IA
Sbjct: 300 SFAQAASSSG--LRTTQLDGRERSDIRSAASQAVADAYFSASE-GAVTAPARSSLGWHIA 356

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            V+++ P    S  EV+  I   +R  K    + E    +E+ LA G S+  ++    + 
Sbjct: 357 RVNSVDPQPARSLAEVRDSIVEVLREQKRQRGIAELAVGIEDRLADGASLSSVASELGVE 416

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKE 470
             D P +  +G  + G           +L   F  D+   +    AL D  +++  ++ +
Sbjct: 417 LQDTPPLTDSGL-IYGTGERVPDMLAPVLEFAFQIDE--GEPEIGALADQQTFLIYEVAD 473

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P+    L E+  +V  +W+ V+  E     AN+ VL   +EG    +       ++  
Sbjct: 474 ITPSAAAPLAEIRNEVTAEWRRVRGNEGAEEAANR-VLRRVEEGATLAEAVAAEEKAIGA 532

Query: 531 TNQINRMDNENKFFG----YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
             Q+     E    G       I+ +F       K       L + V  + +  +  +++
Sbjct: 533 PQQVTYSREELARMGNTRVPAPIALLFGMAKGTAKKLEGSRDLGWYVVDLEDIVLEDLED 592

Query: 587 KDKFI----SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
            D  I    S + Q    +  + +IA ++S+  V  ++  I
Sbjct: 593 NDPLIGQAKSQIAQAWGNEYGEQLIAAMRSKLGVERNEEAI 633


>gi|57239078|ref|YP_180214.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58579021|ref|YP_197233.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
           ruminantium str. Welgevonden]
 gi|57161157|emb|CAH58070.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417647|emb|CAI26851.1| Putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 630

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 129/638 (20%), Positives = 283/638 (44%), Gaps = 29/638 (4%)

Query: 8   ASRTWVAKIFLVVLFVPFLIWGLSDALFSV--SGSSTVVSVGRQKVPFSSFINSWKQELG 65
            S+ + AK+ L+VL    +   +   LFS   S    V  +G++K+    F  ++  EL 
Sbjct: 2   KSKAFFAKLLLIVLICSLISVSVGVPLFSNHFSNKQYVAKIGQEKLSIEDFTTAYHDELR 61

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
            I Q +   +  E+     +   +L+ L+    L +F   + L+     V   I     F
Sbjct: 62  YIQQLLNRPLTPEQIVQFNVKFSVLNRLIENKVLTKFANSLNLKVGEESVINFIKSIKYF 121

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-----LLD 180
             ++  F    F + L+  G+ E+ YI         + ++    GG + + L     L  
Sbjct: 122 QDENGNFDKKKFNAGLSNAGLTERLYISKLESAFPISIMMNCLFGGPQNNYLQYYPDLTK 181

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRAPEYKRISYILFD 238
           +  +   ++R+VD I ++   +  I+ P+   L   +E+ K  ++   PE + I Y+  +
Sbjct: 182 KILQNLHQSRTVDIIEISPV-INDISIPNMEELKSLYEEKKKNNSLVFPESRDIEYVTIN 240

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                 K  +S +E+ +E +         +   +  LVF  + +A+ A   L  GK F  
Sbjct: 241 YENFITKATVSQEEIDSEIKAE----GLDDQIDILNLVFSAKSDAENALSELNNGKTFDS 296

Query: 299 LAEEQG-KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +  +    +L  I+L + +K  +PD  + + +FSL K+G+ +P++H  FG+ I  V+++ 
Sbjct: 297 IVTDLAHSTLDKITLKNITKNTLPD-DIRNQVFSL-KEGEISPILHSMFGWHIIKVTSVH 354

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
                  QE+ K I+  ++  KA++ +  + + + + +  GTS+ EI++   +  I    
Sbjct: 355 KISEHDLQELNKKISQSIKKKKATDLLLAEIEIINDKINHGTSIKEIAKLYNLP-IKTIT 413

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
            D +G ++ GK+V+        +  + G    L++       +  +  V++ +   AR++
Sbjct: 414 TDISGYNLSGKKVSISEANPNSII-LTGFSSQLNQTSNFIDNEDYFFSVRVIKIDQAREK 472

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL--GASLLTTNQIN 535
             +E   ++  +W+    + ++S    +++++  K G + ++I   L     ++  N + 
Sbjct: 473 TFDESKQELVDEWQNNFKSRKLSKLTQEILIKL-KSGIDIQNIDGVLLKPNQVVYRNSVA 531

Query: 536 RMDNENKFFGYDGISQVFSGPVEMV------KCFPIENGLSYVVFK-VTNSKVGPVQEKD 588
            +DN  + +  + ++++F+     +      +  P E  +   V K + N +     +  
Sbjct: 532 SIDNPGQNYPSNLVNEIFNLKKGEISKNYYDEQNPSEQKMLIAVVKDIKNPEQVSTVDLK 591

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                L+    + L + +I YL ++YSV ++  LI+  
Sbjct: 592 ATQEKLSNNNTESLKNQLITYLTNKYSVKINRKLIENI 629


>gi|126735661|ref|ZP_01751406.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp.
           CCS2]
 gi|126714848|gb|EBA11714.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp.
           CCS2]
          Length = 612

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 110/619 (17%), Positives = 249/619 (40%), Gaps = 32/619 (5%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A I + V+ +    +G             + +VG + V   S+  +  +++  +S + G 
Sbjct: 11  AWIIVGVILLGLAGFGTGGL---SGNIRNIGTVGDKDVTVVSYQRALNEQIRALSAQFGQ 67

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            ++ ++A++ G+D+  L  +V   TLD    ++G+     RV+  +   P F G    F+
Sbjct: 68  QISFQQAQAFGIDQVALSQVVLLRTLDNEASELGISVGDERVFDRLQTIPSFQGA-GGFN 126

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            + +   L + G    E+ +   +  +RT + G  V G+   +   D   +F  E RS+ 
Sbjct: 127 RETYRLSLQQSGQTAAEFENGIREETARTLLQGAVVSGVPAPDAYADALVQFISETRSIT 186

Query: 194 YIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
           + V++   + A     + A   ++++     +  PE + I+Y+    +     + +++  
Sbjct: 187 WAVVDAGDLTAPVPGATEAAQQEYYDANPAEFTLPESRDITYVWLTPNMIIDDMVVADAA 246

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDIS 311
           ++  Y +   ++  PE R VE+LV+ +Q  A +A   +  G+  F  L  E+G  L+DI 
Sbjct: 247 VEQLYNQRIAEFVQPERRLVERLVYLSQDRAADAMARVNAGEATFEDLVAERGLRLTDID 306

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           LG  S++ +   S  +++F+ A+ G      +   G  +  ++ +  +  +  +E    +
Sbjct: 307 LGDVSQDDLG--SAGEAVFA-AETGTVVGPFNSPLGPALFRMNAVLAAQEIPLEEAAPRL 363

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
            +++    A E +      + + LA G +M +++ R     + L  +++   +  G  +A
Sbjct: 364 RDELATDAAREFINSSADPIIDLLAGGATMADLAER---TDMRLGTINWTPDNTDG--IA 418

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
           A     +    V     P        L DG    + +   +P   + +E+V   +   W+
Sbjct: 419 AYDAFRREAAAVQDAQFP----EVFDLADGGIFALSLDGIVPPTLQPIEDVRDALAAAWQ 474

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
                + + +KA ++  +              LG   +    + R              Q
Sbjct: 475 AQAQQDAIMAKAEEISADIL----PLTGF-DTLGLDPIVEENLTRRTFLEGT-PPSFNDQ 528

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV------QEKDKFISYLTQMMNKDLLDS 605
           VF   V  V+    EN    ++ ++ +     +       ++D         + +D+ D+
Sbjct: 529 VFEMAVGDVRVLDAENRA--LIVRLDDIAAPDLSDEAVIAQRDAVAENTRAGIAQDIFDA 586

Query: 606 VIAYLKSQYSVTVHDNLIQ 624
               L+ +    ++   I 
Sbjct: 587 YATELQQRTEQRLNQQTID 605


>gi|262372262|ref|ZP_06065541.1| ppic-type ppiase domain-containing protein [Acinetobacter junii
           SH205]
 gi|262312287|gb|EEY93372.1| ppic-type ppiase domain-containing protein [Acinetobacter junii
           SH205]
          Length = 623

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 104/637 (16%), Positives = 225/637 (35%), Gaps = 35/637 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ LV+   P  + G+       + +    SV  Q +       + K
Sbjct: 1   MESFRTLIKGWLGKVLLVLFLTPLALVGIEGYFSGGNKADVAKSVNGQDISNKELETATK 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                    +    +        + +K LD L++ + L Q  E +G+     ++   +A+
Sbjct: 61  NYKDQYLSLVKG--DESLLNLSLIQEKALDALIARSLLQQQAEKLGISLSDTQLEQMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P F  ++ +FS  ++ + L   G+  +  I    +  +   +    +     S   L Q
Sbjct: 119 QPSFQ-ENGQFSQKLYENYLRSVGMTNQGLIASLRQDHALKMISSTLMDYALVSKSDLQQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +           SN  +  ++ K+K+ ++      + Y++     
Sbjct: 178 LANLQTEQRTLHLASIKLDDYKKGITVSNQEIADYYNKHKNQFKQVANVDVDYVVLTPAL 237

Query: 242 KEK-KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEADEAFQSLKK 292
             +  +  S  ELQ  Y+   +K      R V+ ++           QK A++ +  ++ 
Sbjct: 238 LPQANVAPSEAELQQAYKAFVDKQQKDVKREVKHILITTDSRDAATAQKLANDVYAKIQS 297

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYV 349
           G  F   A +  +  S  + G   + Y P V      +++ SL K G  +  +   +GY 
Sbjct: 298 GMSFADAAAQFSEDPSSKTQGGLVEAYAPGVFSTDFDNAVNSL-KNGQISKPVKTQYGYH 356

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           I   +        S++  K  +  +++ TK +    +    L E +    S+D +++  K
Sbjct: 357 IIAANA-PAIDIPSYEAEKPRLIAEVQKTKQANLFSDTVNSLNEMVVGNDSLDAVAQEVK 415

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
            V ++                 +    +  LF    K+   +   ++ L +G  +W++++
Sbjct: 416 GVRVE---SAKGVTLTTQNPYLSDLNVKAKLFNDDVKNGDRNASSSIQLANGDVIWIKVR 472

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +   A  + L +  T+VK      K  +   +K    + E+  +      +         
Sbjct: 473 DYRAAGVKTLAQATTEVKAKVIEEKAYKAAQAKIASTLAEFKTQ--PAAQVVAKSKIIFE 530

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPV------EMVKCFPIENGLSYVVFKVTNSKVGP 583
                 R    ++          FS P         V    + N L  V     N+    
Sbjct: 531 DAGTYAR----SQGLKRAIERAAFSIPAPTKEGMWSVTTTQLPNELVIVAVSTVNTNAAS 586

Query: 584 V---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               ++ ++      Q   + +L+    YLKSQ  + 
Sbjct: 587 ALQPEQLNELTKLYQQFRGQQILEDYTEYLKSQAKIK 623


>gi|254284340|ref|ZP_04959308.1| putative peptidyl-prolyl cis-trans isomerase D [gamma
           proteobacterium NOR51-B]
 gi|219680543|gb|EED36892.1| putative peptidyl-prolyl cis-trans isomerase D [gamma
           proteobacterium NOR51-B]
          Length = 620

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 104/635 (16%), Positives = 233/635 (36%), Gaps = 37/635 (5%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           +R+ +++  AKI + ++ + F  +GL   L   SG+S V  V  +++  +   N+   + 
Sbjct: 1   MREGAKSTAAKIVIGLIVLSFAAFGLESLLPGGSGTS-VAEVNGEEISPAELQNAIASQK 59

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             ++Q  G  ++        +    L+ L+    L Q   D+G+ A    +  EI     
Sbjct: 60  RQLTQIFGDRIDPAMLDDERIRPSALEGLIERKLLLQHAVDLGMIASAQAIGEEITAIEA 119

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F   D  FS D + S LA  G+  + +    ++ L  + + G        S   ++ A +
Sbjct: 120 FQR-DGVFSPDQYKSVLANAGLTPERFRRMQSQDLMLSQLQGAISQSAFVSPSEMEAAAK 178

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
            + E R V Y+               A + ++++  +D +       + YIL  V +  +
Sbjct: 179 VWAEERDVRYLEAPLSDFDRPDSVDEAEIAEYYDNNQDRFVTEPAANVGYILLAVEDFYE 238

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEAD--------EAFQSLKKGKK 295
              +    ++ ++E  +++Y   +   V  ++   + +++D        E  + L  G+ 
Sbjct: 239 P--VDEALVREQFEAVRDEYEVADQSRVSHILIIESDEDSDTSYADRVGEVARRLDAGED 296

Query: 296 FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F QLA E    +     G    F+        + ++I SL+  G ++  +    G     
Sbjct: 297 FGQLAMELSDDVGSAGSGGELGFTDGTAFPEPMEEAIASLS-VGAYSGPVETDAGTHFIR 355

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V          F  +++++   ++I+ A   +      L++       +   +       
Sbjct: 356 VEERVAGERPDFATLREELEQAIKISNAERDLLLAVDELKDLTFNAPDLIGPAEALGFSV 415

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD--PLSKDHTVALPDGSYMWVQIKE 470
            +   +  +           +   E+++  VF ++     +    + L D  ++ V++ E
Sbjct: 416 AEEEELTRSNG-------VGVWADERVVDTVFSEEVYRGGNNSEVLELADSQFLVVRVNE 468

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
            IPAR + L++V  ++    KT        +   ++V +    G+    I   LG     
Sbjct: 469 QIPARQKPLQDVAGEIAAQLKTE-ARTAALTDFTEMVSQRLAAGETLEAIANELGYEWRV 527

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVG-----P 583
                R    N     + +S  F           +    G +  V ++   + G     P
Sbjct: 528 ELAAQRN---NTSLPREVLSTAFVMSDADSSAVELVELPGETIAVVQLARIREGDLQRMP 584

Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
              +++    L     +  L   +  L+ +  + V
Sbjct: 585 NNAREQLQRQLASAGARIDLAEYVRALRQEAEIVV 619


>gi|53805225|ref|YP_113052.1| peptidyl-prolyl cis-trans isomerse D [Methylococcus capsulatus str.
           Bath]
 gi|53758986|gb|AAU93277.1| peptidyl-prolyl cis-trans isomerse D [Methylococcus capsulatus str.
           Bath]
          Length = 605

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 105/625 (16%), Positives = 241/625 (38%), Gaps = 42/625 (6%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
            L+++ +PF  WG+++  F     + V  VG +       + +++Q+L  +       V 
Sbjct: 1   MLILVGIPFAFWGINNY-FDSGKEAPVAVVGDRDFFERDVVQAYQQDLANL-------VG 52

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
                   L ++ L+ LV    + Q     GL      V   I   P F   D KF  D 
Sbjct: 53  LGDVDEKHLKRQALERLVRDELISQAAAGEGLAVPDSAVRAFIQTLPYFQ-TDGKFDKDK 111

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           +   L+ +G +   +++   + L               +   ++   R   + R ++++ 
Sbjct: 112 YNVMLSAQGTSSPVFVEQVKRALLMEQFQRGITDTAFVTRQQVEAFFRLKNQEREIEFVT 171

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
           +      A  + S + + +++  + D +++PE   ++Y+L  + +  K+++ + +EL+  
Sbjct: 172 VPLA--KADEEVSESSIDEYYRSHPDEFQSPETVSVNYLLLSLDDVAKEVKPTEEELRNF 229

Query: 257 YEKNKEKYFSPEIRTVEQLVF-------PNQKEADE----AFQSLKKGKKFIQLAEEQGK 305
           YE+ K  + + E R V  ++         ++  A        + L KG+ F +LA+E   
Sbjct: 230 YEEQKAGFTTEERRKVSHILVTVDPAKPEDEAAALAKIRQIRERLLKGEDFAKLAKETSD 289

Query: 306 S----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     LG  +K  + + +   +  +L++ G+ +  +  SFGY +  V+ + P+ T
Sbjct: 290 DRVSAEKGGDLGVVTKGGM-EPNFEKAALALSQ-GEVSEPVRTSFGYHLIKVTELTPATT 347

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIVSIDL-PLVD 419
             +++VK ++A   R   A  +  +  ++L EF      +++  ++   +   +  P   
Sbjct: 348 KPYEQVKDEVAAGFRRNAAENRFYDLGQKLTEFAFEHPDTLEPAAQALGLKVEETGPFTR 407

Query: 420 FAGKDVKGKE-VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
            +G+ +   E V    + E++L               V +     + +++KE  PA    
Sbjct: 408 ESGEGISADEGVRKAAFSEEVL--------GGKNSDVVEVGADKVVVLRLKEHRPAETMS 459

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
           L EV   +    +   T ++  + A +  L+   EGK    + K     +     + R  
Sbjct: 460 LAEVRERIVSLLRDRATRQKTEALA-EAALKEMGEGKTLGGVAKAHNWKVTGPLTVRRDA 518

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KFISYLTQ 596
           +       +           +       +     +  +   +  P  EKD       L +
Sbjct: 519 SGVAAAVVNAAFGTRELNRPIRVALENGDQAILRIAAIKEGEAAPEAEKDMETVRQSLAR 578

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDN 621
           +  +    + +A ++    V +  +
Sbjct: 579 VAGQREFAAFMAEMRRSADVYIKPD 603


>gi|58617080|ref|YP_196279.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
           ruminantium str. Gardel]
 gi|58416692|emb|CAI27805.1| Putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
           ruminantium str. Gardel]
          Length = 630

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 129/638 (20%), Positives = 284/638 (44%), Gaps = 29/638 (4%)

Query: 8   ASRTWVAKIFLVVLFVPFLIWGLSDALFSV--SGSSTVVSVGRQKVPFSSFINSWKQELG 65
            S+ + AK+ L+VL    +   +   LFS   S    V  +G++K+    F  ++  EL 
Sbjct: 2   KSKAFFAKLLLIVLICSLISVSVGVPLFSNHFSNKQYVAKIGQEKLSIEDFTTAYHDELR 61

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
            I Q +   +  E+     +   +L+ L+    L +F   + L+     V   I     F
Sbjct: 62  YIQQLLNRPLTPEQIVQFNVKFSVLNRLIENKVLTKFANSLNLKVGEESVINFIKSIKYF 121

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-----LLD 180
             ++  F    F + L+  G+ E+ YI         + ++    GG + + L     L  
Sbjct: 122 QDENGNFDKKKFNAGLSNAGLTERLYISKLESAFPISIMMNCLFGGPQNNYLQYYPDLTK 181

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRAPEYKRISYILFD 238
           +  +   ++R+VD I ++   +  I+ P+   L   +E+ K  ++   PE + I Y+  +
Sbjct: 182 KILQNLHQSRTVDIIEISPV-INDISIPNMEELKSLYEEKKKNNSLVFPESRDIEYVTIN 240

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                 K  +S +E+ +E +         +   +  LVF  + +A+ A   L  GK F  
Sbjct: 241 YENFTTKATVSQEEIDSEIKAE----GLDDQIDILNLVFSAKSDAENALSELNNGKTFDS 296

Query: 299 LAEEQG-KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +  +    +L  I+L + +K  +PD  + + +FSL K+G+ +P++H  FG+ I  V+++ 
Sbjct: 297 IVTDLAHSTLDKITLKNITKNTLPD-DIRNQVFSL-KEGEISPILHSMFGWHIIKVTSVH 354

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
                  QE+ K I+  ++  KA++ +  + + + + +  GTS+ EI++   +  I    
Sbjct: 355 KISEHDLQELNKKISQSIKKKKATDLLLAEIEIINDKINHGTSIKEIAKLYNLP-IKTIT 413

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
            D +G ++ GK+V+        +  + G    L++       +  +  V++ +   AR++
Sbjct: 414 TDISGYNLLGKKVSISEANSNSII-LTGFSSQLNQTSNFIDNEDYFFSVRVIKIDQAREK 472

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL--GASLLTTNQIN 535
             +E   ++  +W+    ++++S    +++++  K G + ++I   L     ++  N + 
Sbjct: 473 TFDESKQELVDEWQNNFKSKKLSKLTQEILIKL-KSGIDIQNIDGVLLKPNQVVYRNSVA 531

Query: 536 RMDNENKFFGYDGISQVFSGPVEMV------KCFPIENGLSYVVFK-VTNSKVGPVQEKD 588
            +DN  + +  + ++++F+     +      +  P E  +   V K + N +     +  
Sbjct: 532 SIDNPGQNYPSNLVNEIFNLKKGEISKNYYDEQNPSEQKMLIAVVKDIKNPEQVSTVDLK 591

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                L+    + L + +I YL ++YSV ++  LI+  
Sbjct: 592 ATQEKLSNNNTESLKNQLITYLTNKYSVKINRKLIENI 629


>gi|331005209|ref|ZP_08328603.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC1989]
 gi|330420991|gb|EGG95263.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC1989]
          Length = 635

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 105/637 (16%), Positives = 231/637 (36%), Gaps = 30/637 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R  ++   A   + +L +P  + G+ +  +  S       V    +       + 
Sbjct: 1   MLQGMRNKTKGLTAVFLIGLLTIPLALVGVENLFYGSSTVGEAAEVDGTIITERDVQLAI 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +E   +  + G  + ++      L + ++ +LV    +    E   +      +   I 
Sbjct: 61  SRERQRLQSQFGENLPADFFTDERLRESVMSSLVQRTLMINIAEKGDMTFSDTEIDKTIV 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P+F  +   F    F+  +   G     +       L    +    V     ++  +D
Sbjct: 121 DLPIFQLE-GNFDQQRFLQGVRNLGHTPASFRTLLKNDLLANQMQNAIVASDFITDKEID 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                  + R   Y+ L    +P     S+  ++  ++  K+ Y + E   I YI  +V 
Sbjct: 180 SVVSLSRQTRDFSYVTLPLGELPQEMTVSDEEISTRYDLNKNQYLSTEEVAIEYIELNVA 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-----AFQSLKKGKK 295
             EK I I+++ +Q +Y+     Y +   R    ++     EA +       + L  G  
Sbjct: 240 SIEKDITITDEAIQQQYDSIVASYNATTQREAAHIMIEGDNEAAQQKIISVKEQLASGAD 299

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA E            +LG  + +  P+ +  +++ SL + G  +  +         
Sbjct: 300 FSALASEYSDDFGTRDNGGNLGVSAGDGFPE-AFEEALLSLTE-GQVSEAVEIDGATHFI 357

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            +  +      +F   K  I ++++  +A E+   D + LEE      ++DE++    I 
Sbjct: 358 KLIALTEKTAPTFDSQKIKIESELKRAQAEEQFILDLQTLEELAYNAENLDEVAAELGIS 417

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--DHTVALPDGSYMWVQIK 469
           +I   L            V  I    +++   F +     K     ++L     + V++ 
Sbjct: 418 AIKTGLFTRD----NAATVDTILQDSRVVDAAFSEQVVQEKHSSDLLSLSSDKSVVVKLL 473

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           E  P R   L+E   D+  + +  K   +++ +A  L  E  + G +   + +  G ++ 
Sbjct: 474 EHKPVRTLTLDEKRGDIVAELQLEKAKAQIAEQARALR-EALETGTDITTLAEEKGVAIS 532

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE---NGLSYVVFKVTNSKVGP--- 583
           T  +  R          + ++ VF           +E   +   YV+  ++    G    
Sbjct: 533 TQKEAQRNTT---GVPEELLASVFEMSHPTDSPVLLERHLDNGDYVIASLSQVTSGNTEG 589

Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
              +E+  F S L+  ++ D   +  A L+++  + +
Sbjct: 590 LTEEERASFRSSLSSGISGDEYRAWQAQLEAEADINI 626


>gi|87121304|ref|ZP_01077194.1| peptidyl-prolyl cis-trans isomerase D, putative [Marinomonas sp.
           MED121]
 gi|86163461|gb|EAQ64736.1| peptidyl-prolyl cis-trans isomerase D, putative [Marinomonas sp.
           MED121]
          Length = 611

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 113/642 (17%), Positives = 243/642 (37%), Gaps = 48/642 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+  V KI +  + V F ++G+   +   + S TV  V   ++  +  + S 
Sbjct: 1   MLQDIRDKSQGIVVKIIIGFIVVTFALFGVDALVTGFTTSDTVAEVDGVEITRTELLQSA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   +   +G  ++        L ++ LD L+  A L     D+ L     +V   + 
Sbjct: 61  EIQRRQLISMMGGQIDPALLEDTLLQRRALDELIQRAVLTNNANDLNLAVSDAQVDQYLI 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           ++  F   D +F    +++ +   G     +     + +                +  +D
Sbjct: 121 QAEQFQ-TDGQFDQTKYLNFIRTLGYTPLAFKQRIKQDILLQQGRIALSSSEFVLSNQVD 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  +   + RS DYI  +     A+   S+  +  +F++   +++ PE  ++ Y++    
Sbjct: 180 QVLKLQNQQRSYDYIRYSLADEVALTQVSDTEIQAYFDENTQSFQNPEQVKLDYVIISSV 239

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-------- 292
           +   K+ +S+ EL+  Y+         E R    L+  N + +DE  ++L +        
Sbjct: 240 DFHDKVNVSSAELEQAYQAATSTAPKEERRASHILIEANDQRSDEEARALAQDIKSKIDS 299

Query: 293 GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G KF  LA++    L        LG  S   +      + +FS+      + V+   FGY
Sbjct: 300 GTKFEALAKQYSDDLGSKAAGGDLGYVSSGMMV-PEFENVLFSMV-VDQVSGVVETEFGY 357

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  +  I    T S  E++ ++  ++   KA + +    + + +       ++ ++   
Sbjct: 358 HLIELREITNVDTPSLAEMEPELTQEILDRKAQDALLSAQEDITDLAYASDDLNALATEY 417

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
               +++   D+ G+    + +++        F     +D L+    + L +     V+I
Sbjct: 418 N---VNIMHSDWFGRQGGQELISSNAQAIAAAFSPELLEDSLNSG-LLELNEEQVAIVRI 473

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
            E  P  +  LEE   DV++     K    +  KA Q+  + +       ++        
Sbjct: 474 NEHKPQSNMSLEEASADVQEILLKRKATASLKQKAAQMQADVNNSAWTRVELASR----- 528

Query: 529 LTTNQINRMDNENKFFGYDGISQV---FSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGP 583
                           G D IS++    + P   V    ++  N    V+  +   K G 
Sbjct: 529 ----------------GRDDISEIVFKMARPQGDVATSKVQSLNDGDLVLVNLLEVKDGE 572

Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
           V E D    Y+ + +N+  +   +A  +       +  L++R
Sbjct: 573 VGEDDAQRDYIERYLNQSGVSLAVAAHQKALE---NAALVER 611


>gi|51244848|ref|YP_064732.1| peptidyl-prolyl cis-trans isomerase D [Desulfotalea psychrophila
           LSv54]
 gi|50875885|emb|CAG35725.1| related to peptidyl-prolyl cis-trans isomerase D [Desulfotalea
           psychrophila LSv54]
          Length = 634

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 116/643 (18%), Positives = 254/643 (39%), Gaps = 34/643 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+I R  +++   +I +VV+ + F+ WG+   + +   S   + V  +++    F  ++
Sbjct: 5   MLQIFRNKAQSIFIQIIVVVIALVFIFWGVGANMMN--KSEAAIVVNGEEISLQQFQQAY 62

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            Q    +S + G  V    A ++GL  ++++ LV    L Q  + +G++     +   I 
Sbjct: 63  DQAFQQLSDQFGGKVPKGMADALGLKDQVVNRLVQQELLRQGGKQMGVQLSAVEIQHAIQ 122

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNLLL 179
             P FH KD  F    + S LA   ++  ++  +    +                S+  +
Sbjct: 123 AMPQFH-KDGAFDVKSYNSILAANRLSPSKFEANIRHDMLAEKTARAINEFSAHASDFEI 181

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           ++      E  SVD+   + +   +        L QWF++ KDNY+     +++Y+ +D 
Sbjct: 182 EEFYGQANEGVSVDFASFSPKDFSSQVSVEEPALAQWFKEAKDNYKKSPEVKLTYLAYDY 241

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADEAF 287
              ++KI +    +   Y+ +   +   E R    ++F               K+A+   
Sbjct: 242 ATIQEKISLDEAAINNYYQSHLNTFRLAEKRHARHILFVVSPGDSDEKQQAQLKKAENVL 301

Query: 288 QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           +  +  + F QLA +  +  S      LG F++  +     AD++F+L K GD + ++  
Sbjct: 302 KKAQADEDFAQLARQFSEGPSKSEGGDLGFFARAEMI-PPFADAVFTL-KNGDISGIVKT 359

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
           +FGY I  +  I+ + T S  +V++ IA  ++  +A     +      E +    ++   
Sbjct: 360 NFGYHIIKLEGIQEAKTKSLDKVREQIALSLQQDQAKALAFQLANNAYEGIIGAGNLQ-- 417

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           +  +K         D+  +      +       +  F +        +  ++   D  Y 
Sbjct: 418 AYTKKHPETPAITTDYFSQQNPPANLKDNKLFLEKAFAL-----GKKELSSLLQTDSGYA 472

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            + + +        L +V     +D++     E    KA + +    +  + F  + +  
Sbjct: 473 VIYVDDINTPATPTLAKVRDRATEDYRNYLANELAKKKAEEFLKGLHEGKETFTTLAEQT 532

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSG-PVEMVKCFPIENGLSYVVF----KVTNS 579
           G     T+ + R   ++  F    + Q+F   P +       +   SY V+    + T S
Sbjct: 533 GVQTEKTDFLLRQ-GDSGTFPQTLLEQIFLLSPQKTSPDTIGQADGSYYVYSYIGRNTPS 591

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                 EK+++IS +     + LL + + + +    +  + +L
Sbjct: 592 ASLTAPEKERYISGILNNKQQMLLSAWLIFQQKNAQIERNQSL 634


>gi|296535271|ref|ZP_06897478.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296264392|gb|EFH10810.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 507

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 116/510 (22%), Positives = 220/510 (43%), Gaps = 7/510 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  +R+ + TW AKI   +L + F +WG+ D +      ++V  VGR  +       + 
Sbjct: 1   MLTALRRLAGTWFAKILFALLVLSFAVWGIEDIVRQFGSDTSVARVGRDAIEVPEAQAAA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++E+G + +++G            L ++ ++ LV      Q    +GL      V   + 
Sbjct: 61  RREIGRVQRQLGGSFEITPEMGEALTRQAVEGLVMERVQRQEARHLGLAVPEAAVRDYVW 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F G D +F+   F S L    ++E E++      L R  +VG    G    + L  
Sbjct: 121 GIPAFQGPDGRFNRIAFDSFLRNNQLSEGEFLTLLRADLERQQMVGAVRAGAAGPDALTR 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  E R  + + L     P  A P  A L ++ E   D + APEY+R++  +    
Sbjct: 181 PLLAWEREQRLAEIVRLPFSAAPEPAAPEEAQLRRFHENNADRFSAPEYRRVTLAVLSPE 240

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF-IQL 299
                ++ + +EL+A YE +++ Y  PE R+++Q + P++ +A+   +  ++G  F    
Sbjct: 241 TVMGDVQATEEELRAAYEAHRDHYERPERRSLQQALLPDRAKAEALARQWREGADFAAIT 300

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
              +        LG   +  +P   LA++ F+L + G  +  +   FG+ + HV+ I   
Sbjct: 301 QAAEAAGGQATELGESDRAGLPLPELAEAAFTLPQGG-VSEPVQSPFGWHVVHVTAIAAG 359

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
               F+ V+ ++  Q++  +A++   E   ++E+ LA G S+ E++ R  +  +   +VD
Sbjct: 360 EDRGFEAVRPEVEAQVKRERAADLAYERANQVEDALAAGGSLAELAPRFGL-GVAQAVVD 418

Query: 420 FAGKDVKGKEVAAIP---YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            AG+  +G + AA+P       +  R                   +    +++E IPA  
Sbjct: 419 AAGRTPEGAQ-AALPLSGQARDIALRAVFAAQQGQMPRLAEAGQTALFAFELQEVIPAAL 477

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
           R  E V   V+  +           +A  L
Sbjct: 478 RPFETVEPQVRAAYLADARRRAQEERAAAL 507



 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 71/271 (26%), Gaps = 26/271 (9%)

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V   +     +++  +       R +     + +  K            D  +  +   +
Sbjct: 246 VQATEEELRAAYEAHRDHYERPERRSLQQALLPDRAKAEALARQWREGADFAAITQAAEA 305

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
                 +    D  G  +       +L    F           V  P G +  V +    
Sbjct: 306 AGGQATELGESDRAGLPL------PELAEAAFTLPQG-GVSEPVQSPFG-WHVVHVTAIA 357

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL---- 528
              DR  E V  +V+   K  + A+    +ANQ V +    G +  ++    G  +    
Sbjct: 358 AGEDRGFEAVRPEVEAQVKRERAADLAYERANQ-VEDALAAGGSLAELAPRFGLGVAQAV 416

Query: 529 -----LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
                 T          +       +  VF+     +         +   F++       
Sbjct: 417 VDAAGRTPEGAQAALPLSGQARDIALRAVFAAQQGQMPRLAEAGQTALFAFELQEVIPAA 476

Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
           ++  +     +          + +A  + + 
Sbjct: 477 LRPFETVEPQVR--------AAYLADARRRA 499


>gi|190570945|ref|YP_001975303.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190357217|emb|CAQ54634.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 599

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 134/605 (22%), Positives = 272/605 (44%), Gaps = 35/605 (5%)

Query: 27  IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD 86
             G+ + L +      +  VG++ +    +   ++     IS   G  V+ E+ + +  D
Sbjct: 21  FMGIGNLLSNDDERKELAKVGKEVITSDEYKLLYQNYKKQIS---GSDVSKEQVKKLKYD 77

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
             +L+ L+    L   I ++GL+     +   I  +  F     +F H+ F   L    I
Sbjct: 78  --LLNALIEQKLLFNLISELGLKVGEESIKSHIKNTKYFQDDKGEFDHNKFHQTLNSLHI 135

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKRFYFENRSVDYIVLNNRHVP 203
            EKEYI+   K+L     +        P      + +Q  +  ++ R VD + +    + 
Sbjct: 136 TEKEYIEKLEKILPAMMFMTSLFKDNYPVTFGEGVDEQIYKNRYQTRVVDIVKITEDAIT 195

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
            + +P +  L   +E+ K N+  PEY+   YI  D    E +I IS++E+ +  E  + K
Sbjct: 196 DVPEPDDQALLDLYERNKSNFYYPEYRTAQYISLDQKYFEDQIRISDEEVDSIIEHQELK 255

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGK-SLSDISLGSFSKEYIP 321
                 R +  ++FP +++A+ A ++L++ K  F Q+ EE  K  L +  + + +K+++P
Sbjct: 256 ----NQRDIFNVIFPTKEKAEIARRALEESKASFEQIIEEFNKVKLDETRVNNITKDFLP 311

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           + ++ + +F+L K G+ + V+  +FG+ +  V +I         ++KKDI + +   K+ 
Sbjct: 312 E-NMREKVFAL-KTGEVSEVLTSNFGWHVIKVESIHQISDEDLVDLKKDIRSVLTNQKSF 369

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
           EKV +   ++   +  G +++EIS    +    +  VD +GKD  G EV         + 
Sbjct: 370 EKVNDFINQVNYKIYNGATIEEISNNYNLPIQTIGPVDASGKDQSGNEVGN---SSDFIS 426

Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
            +F ++    K +   + D + + V+I + +P + +  EE      K W++    E +  
Sbjct: 427 FIFSREKD-QKSYFKGVGD-TVVGVKISDIVPPKLQNFEESRESAIKLWRSEFIKERMFK 484

Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
              ++ ++  ++     D+ +  G  L+   QI R +   + + +  I ++F+       
Sbjct: 485 MGQEVAVQLREK----TDLEEMQGIKLVKGQQIQRNE---QNYPFSFIEEIFNMKTTNSV 537

Query: 562 CFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
             PI+  N +   V K  +S  G +   D     +       L + +I+YLKS+Y V V+
Sbjct: 538 TDPIQYNNEIIIGVLKQMHSSNGKLNMLDTGKRVMI-----SLKEQLISYLKSKYRVEVN 592

Query: 620 DNLIQ 624
             +I 
Sbjct: 593 HAMID 597


>gi|254499150|ref|ZP_05111837.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254351629|gb|EET10477.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 624

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 111/638 (17%), Positives = 246/638 (38%), Gaps = 39/638 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+     S   +++ V+V  + +   +F  ++
Sbjct: 1   MLQKLNERIQGVVAWLVVILIGITFTLFGVDYYFQSHQTTNSKVTVNGEPLTEQAFEINY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++  GM   +    + +E  +   L  ++LD +V+   + Q     G      +    I 
Sbjct: 61  RRARGM---QDIAQMTAEDEKK--LQNQVLDQMVTNEVMVQAAHTNGFNVSLNQANAAIL 115

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  +D  FS + +   L+     +  + +   + +        F+G        ++
Sbjct: 116 NIPQFQ-EDGHFSSEKYQQALSAALFTQLSFQNEVKQGMLLNQQRFAFIGSSFALPDEIE 174

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  + Y +NR  DY+ ++       A  S   +  ++++++  + APE   + Y+L  ++
Sbjct: 175 RFVKLYMQNRDYDYVTISAARFEKDAHVSPEAIADYYKQHQKEFMAPEQVSLDYVLLSMN 234

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288
             +K I+IS+D+++  Y +N+  Y +P    V  ++F              QK+AD+A+ 
Sbjct: 235 NIKKHIKISDDDIKRFYNENQNNYLTPAQWQVAHILFATPEDVSKDELDQIQKKADDAYA 294

Query: 289 SLKK-GKKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           +L+K   +F +L        LS    G+              + +L K G+ +       
Sbjct: 295 ALQKDPAQFEKLVTTLSDDKLSVAEKGALPWITAGQNDYDKILSNLTKPGEISAPEKTKH 354

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEIS 405
           GY I  +   KP    S  EV+  I  Q+    A  +     ++L +       S++ +S
Sbjct: 355 GYEIFKLIAYKPVTMKSLAEVETTIKEQLLAEMAQTQYAHALEQLSDLSYQSPDSLNPVS 414

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463
              K+     P+   AG +       AI   + ++   F  D  +  +    V L + S 
Sbjct: 415 DAMKLKIEKTPVFSRAGGN------DAITKNQLVINAAFSHDVLELGNNSEPVQLDNDSV 468

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           + V++ E    +++ LE V   + K         +       L+     E K    +   
Sbjct: 469 VVVRVNEHRAEKEQSLEAVQAQINKILIKQVAEAKAKELGKNLLD--PTESKEQEKLMST 526

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
              +  +    +R  ++      D     F+      +   +     YVV ++ +   G 
Sbjct: 527 HKLTWNSVEHASRDSDKADVLIND---AAFNLLRPQSRNGIVLPNGDYVVVRLKHINDGN 583

Query: 584 V-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           +     +++D  +  +         D     L +Q  +
Sbjct: 584 LNTLDKEQQDSLVQQIEASSGMMDYDLYAKSLINQAKI 621


>gi|329894935|ref|ZP_08270734.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC3088]
 gi|328922664|gb|EGG29999.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC3088]
          Length = 624

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 108/637 (16%), Positives = 231/637 (36%), Gaps = 30/637 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR +++  V K+ + ++ + F ++G+   L   S   +V  V   K+       + 
Sbjct: 1   MLQDIRNSTQGPVFKVIVGLIVLSFALFGVESILLGGS-DDSVALVNGDKIRAVEVQQAA 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            ++   I+  +G   +        L  + L+ LV      Q+ E +GL A   ++  ++A
Sbjct: 60  NRQKQQIAAMLGENFDPSLIDDAQLSARALEGLVGNKLQQQWAESLGLTASDVQLGAQVA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   D KFS +++   LA  G     + +          + G  +     +     
Sbjct: 120 AIPAFQ-IDGKFSAELYKQSLAAAGFTPLTFREALRVDEIVKQLNGGLLASEFVTGAEAR 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   E RSV Y  +         + +   +  +++     + + E   + YI     
Sbjct: 179 ALARVNGETRSVRYAKVAGDRFQNTVEITQDQIQAYYDSNAAQFVSEEAVVLDYITLRAD 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQS--------LK 291
           +  +   ++  +L+A YE+    Y    E R    L+     EADEA+          L 
Sbjct: 239 DFVEP--VAEADLRAAYEQEISSYAYQDEARVSHILLIQGDDEADEAYAQRIQSAQTALT 296

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  +AE    + G S     LG  + +  P   + ++I  L    + +  +    G
Sbjct: 297 DGEAFSVVAERLSDDIGSSSDGGDLGYTAGDVFP-AEMEEAIKGLDIN-EVSGPVLTDAG 354

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
             +  V++ + S   SF E++ ++   +    A  ++    + L++     T + E ++ 
Sbjct: 355 THLITVTDRRSSEPPSFMEMRSELEASLSQADAQRRLVSQVEALKDLTYTATDLREPAQT 414

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
             +  +    +   G    G+ V          F     ++       + + + +++ ++
Sbjct: 415 LGLDVVRSGPITRRG----GQGVLGDDRVIAAAFSDLVIEEGW--SEVIEVSENAFVALK 468

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           + E  PA  + +E+V   +          E + +  N+L+ + +  G+   DI +     
Sbjct: 469 LVEHQPAAPQSIEQVSDRIVSVLTAQAEEEALRAFGNELLDQLA-GGRTIEDIAQEHNLE 527

Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS--YVVFKVT--NSKVGP 583
                Q  R   +        I    S  +        +NG +  Y VF V   + +  P
Sbjct: 528 WQVALQSRRGSADIPRQWQANIFAESSTGLPRRNFAVGDNGDALLYEVFAVQAGDEEALP 587

Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
                   S   + +   L   +   L+    + ++ 
Sbjct: 588 ETLFAAMKSRQLRGLQTALQRGLSETLRDNADIEIYQ 624


>gi|121609649|ref|YP_997456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
 gi|121554289|gb|ABM58438.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
          Length = 643

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 105/648 (16%), Positives = 225/648 (34%), Gaps = 48/648 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E IRK S+  +  +FL ++   F++ G     FS + S  V  V    +  + +  + 
Sbjct: 1   MFETIRKHSKIVMIFLFL-LIIPAFVLVGTDRNYFSEA-SPVVARVDGHDISQADWDRAH 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +QE   I  +    V++    S       L+ LV    LD   + + L     R+   + 
Sbjct: 59  RQESDRIRAQSP-TVDARLLDSPLARYATLERLVRERVLDAAAQQMRLVTSDARLIRSLQ 117

Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +P        D     D + + L  +G+  + +  +  + ++   V+   +     +N 
Sbjct: 118 ETPAIAALKRADGTLDADAYRALLVGQGVTPEVFEANLRRNIAADQVLDAVLSTALVANA 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               A    +E R +     +         P++A L  +++ +   +R PE   + Y++ 
Sbjct: 178 QARLALDALYERRDIQVARFDAPDFAGRVLPTDADLQSYYDAHPAQFRQPEQATVEYLVL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG--- 293
           D+      I +  DEL++ Y+ +   +  + + R    ++    K+A  A +   K    
Sbjct: 238 DLDSVRATITVPEDELRSYYDSDYLPRIMAKQERRASHILISVAKDAPAAEREKAKARAT 297

Query: 294 ----------KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                       F  LA+    ++G + +   L  F++  +      +++F+L KKG  +
Sbjct: 298 ELLAQLRKTPADFAPLAKQSSDDKGSAAAGGDLNFFARGAMTKP-FEEAVFAL-KKGQIS 355

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398
            V+   FGY I  +++IK      F+E +  IA ++   +A  +  E  +     +    
Sbjct: 356 DVVETEFGYHIIELTDIKTPPQPGFEEARAVIAAELGQQRAQRQFAEMAESFSNAVYEQA 415

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456
            S+  ++ + K+       V                   + L  +F  D   +K +T  V
Sbjct: 416 DSLLPVADKLKLKLQSATNVSRTP----APGAKGALASSKFLQALFAPDTLQNKRNTEAV 471

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            +        ++    PA    L +V   V+  +   K+A     +              
Sbjct: 472 EIGPQQMAAGRVTSYTPASTLPLAQVRERVRSLYVAEKSAALAQQEGQ----------AK 521

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574
                 +   +            + +      I      P + +  +   +     Y V 
Sbjct: 522 LSAWKADPATATGLAAATEIARGQGQNLPRPVIDAALRTPADALPAWTGVDLGAAGYAVV 581

Query: 575 KVTNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
           K+      +    Q   +      Q + +  + +    LK +  V + 
Sbjct: 582 KINRVLARQAPDAQRAQQEQQQYAQWLARAEVLAYYELLKQRLKVRIQ 629


>gi|254418312|ref|ZP_05032036.1| hypothetical protein BBAL3_622 [Brevundimonas sp. BAL3]
 gi|196184489|gb|EDX79465.1| hypothetical protein BBAL3_622 [Brevundimonas sp. BAL3]
          Length = 635

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 112/635 (17%), Positives = 240/635 (37%), Gaps = 20/635 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+   R  SR+  A   LV++ + F+I G    +F+  G   V+  G + +  + F  ++
Sbjct: 1   MITAFRAFSRSKWAAALLVLIAISFVIVGARMDVFANLGPKHVIDAGDRSMNEAEFSAAF 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +    I Q+ G  V +E   +  +  + LD+         +    G+      +  +I 
Sbjct: 61  GRVRENIQQQAGRPVTNEDLIAENIHTRFLDSQTEQFGFLNWAWKAGIRPGKELIVKQIR 120

Query: 121 RSPLFHG-KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
           + P F      +F    + S LA++ +             +          G R   +  
Sbjct: 121 QIPAFFNSVTGQFDQQAYESALAQQNLTPAMLEQDLRDQYATEHFGAAIFAGARAPRIYG 180

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                  FE R   +  +       I  P++A L  + ++     RAPE++ +S +LF  
Sbjct: 181 ALLAGAAFETRDGRWFEVTPAMAGEIPAPTDAQLNAFIQENAARLRAPEFRMVSVVLFTP 240

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                 + +S++ ++  +E  K+    PE RT   L  P++  A +   +L+ G+    +
Sbjct: 241 DPGAAPV-VSDERIRERFEFKKDSLGKPETRTFVTLTAPSRDVAQKIAAALRAGQSPADV 299

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
                   +  ++    +  + D + A ++F L +    +  +    G+ +A V+ I+P 
Sbjct: 300 GRANSIQPASFNV--TPRAAVGDAATAAAVFGL-QVNQVSDPVQAGVGFAVAKVTAIQPG 356

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
              + +  ++ I  ++R      +     ++ E     G ++ + +R      IDLP   
Sbjct: 357 QPATLENSREQIVAELRAEDVKGQTYAKVEKYEAARTAGKNLADAAREAGGRVIDLPPFT 416

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
             GK   G+ + A P   Q+    +        D  +    G Y  V++ +  P+    L
Sbjct: 417 KDGKLPNGQALNAPP---QVFETAWSLTKGGESD-VIDAGQGQYFAVRVNDIRPSALPTL 472

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            EV   +   W   + +  +++KA +L     ++G++   + +++ A L     + R   
Sbjct: 473 AEVRAPLAAQWTQREISRRLAAKAEEL-ASRVRQGQDIAAVARSVNAPLTVRTGVVRDQA 531

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
             +  G   +  +F      V   P E G  Y+V +V                     + 
Sbjct: 532 TQESLGQGVLQGLFGQAKGQVFSQPGEGG--YLVGRVDGVHAANPAVAGPLAEQARPRIT 589

Query: 600 KDLLDSVIA------YLKSQYSVTVHDNLIQRYLD 628
           ++L+ +++         +S+    V   L ++ L 
Sbjct: 590 QELVQAMVQTEMTAGAQRSKAKNDV--ALARQALG 622


>gi|34498008|ref|NP_902223.1| peptidyl-prolyl cis-trans isomerase [Chromobacterium violaceum ATCC
           12472]
 gi|34103863|gb|AAQ60223.1| probable peptidyl-prolyl cis-trans isomerase [Chromobacterium
           violaceum ATCC 12472]
          Length = 612

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 112/641 (17%), Positives = 231/641 (36%), Gaps = 63/641 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E ++      V ++ L  + + F+ +G+     S +    +V VG+ K+       + 
Sbjct: 1   MFEFVQNNKT--VIQVILGAVALTFVGFGVGSY-SSATDDPYLVKVGKTKIYKRDLDRAL 57

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +                       +  L+NL+    L     D G      ++   IA
Sbjct: 58  EGQPS----------------DPATRQAALENLIRQELLLAEARDHGAAVSPDQLRKAIA 101

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  ++ +FS   +   L     N + +    ++ +     +    G    SN ++ 
Sbjct: 102 SIPAFQ-ENGQFSAQRYSEFLKSRYPNPEAFEADISRDILLQSQLSSVAGTQFVSNTVVT 160

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      E R +  +VL      +      A +  +++     +  PE  ++ Y++    
Sbjct: 161 RVAGLLGEGRELQPLVLKPSDFASEVKTDAAAIKAYYDANAKRFSLPEQVKLDYVVLSQD 220

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD---------EAFQSLK 291
              + I++S+ E+Q  Y+++K      E R    ++    K+A          EA   LK
Sbjct: 221 ALAQGIKVSDAEVQKYYDQHKADLAG-EQRRASHILLTVAKDAKPEQKAKVKAEAEAILK 279

Query: 292 ----KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                  KF +LA+    + G +     LG F    +      D++F + K G  + ++ 
Sbjct: 280 EVRVNPAKFAELAKAKSQDPGSAEKGGDLGFFGHGMMVKP-FDDAVFKM-KPGQISDLVE 337

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             +G+ I  +  +K     S  +VK  + ++++  KA+    E   +L E        D 
Sbjct: 338 TEYGFHIIRLDAVKS---QSLDDVKGAVVDKLQKQKAAALFHEQAGKLNEIAYQQA--DS 392

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--DHTVALPDG 461
           +      + +++   D+  ++   ++   +    +LL  VF  D    K     V +   
Sbjct: 393 LKGVVDALKLEVKHSDWVRRNQPSQD--ELLGNAKLLSAVFSDDVLKKKHNSEVVDIGGN 450

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
             +  +I E  P R + L +V   ++K+      A+    K   L+ E  K GK      
Sbjct: 451 RLVVARIAEHQPERQQPLADVTDAIRKELVERDGAKLADKKGQALLAEL-KAGKGVDAQ- 508

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNS 579
                       ++R            +  VF+     +  F     +   YV+++V   
Sbjct: 509 -----KWGPAATVSR--RAAAGMPAADVRAVFAVAGSKLPGFAGVRHDTGEYVIYRVNKV 561

Query: 580 KVGPV---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
              P     +K +  + L ++     L S +  L+ +Y VT
Sbjct: 562 IPAPAVTDADKAQLGNVLGELSANSQLASYLKALREKYPVT 602


>gi|332284237|ref|YP_004416148.1| peptidyl-prolyl cis-trans isomerase D [Pusillimonas sp. T7-7]
 gi|330428190|gb|AEC19524.1| peptidyl-prolyl cis-trans isomerase D [Pusillimonas sp. T7-7]
          Length = 655

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 121/663 (18%), Positives = 245/663 (36%), Gaps = 46/663 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + IR   +  +  + LV++   F++ G+S     VSG   +V++G   +    F  + 
Sbjct: 1   MFDFIRTH-QRLMQLVLLVLILPSFVLIGVSGYTNYVSGDHDIVTLGDTSITQQDFDQAR 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +L  + Q      +     S      +L++L+    L +             +   IA
Sbjct: 60  RNQLQQLQQSSQGAFDPAILDSPAARSALLESLIDRTVLVETATKERFSVSDSVLRQTIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P     D +FS + +   LA  G+  +++       L+   V+G         ++++D
Sbjct: 120 SMPQLQ-VDGQFSAERYNDVLASAGLTTRDFEQSQRGELALGRVLGPVTMTASVPSVVID 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           + K    E R++  +             ++A +  W+EK K +   PE     Y+L +  
Sbjct: 179 KLKLALTEQRTIRLLAFPAAEQEKEVQITDADIQDWYEKNKQSLELPEQLSAQYLLLNEE 238

Query: 241 EKEKKI-EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--QSLKKGKKFI 297
                + +IS+++LQ  YE+NK +Y  P    V  +      +A EA   ++L K +   
Sbjct: 239 AAMANLPQISDEDLQKYYEQNKARYVQPARVNVSHIQINIPADASEAQRSEALAKAQDIA 298

Query: 298 QL---------------AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
           +                +++ G +     LG  +K   P   L   +F+L K G  +  +
Sbjct: 299 KRAQADAAAFAELAQNESQDAGTAKEGGKLGWITKGSWP-AQLEQVVFAL-KAGQVSDAV 356

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSM 401
            G  GY +   + ++     SF+E K  +  ++     +++  +   +L   +     S+
Sbjct: 357 EGPGGYHVFLANEVQAEKGESFEEAKAKVQAEVSRQLGADRYADMATKLTSLVYDNPDSL 416

Query: 402 DEISRREKIVSID--------LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS-- 451
              +    +            L   D    D       A    +  + R       L+  
Sbjct: 417 QAAADELGLKVKTATGIARDRLLASDEVPADAASASEDAALLDDVRVRRALFSPQVLNEK 476

Query: 452 -KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
                + +   + M V++    PA   +L +V   +++  KT +     + +A Q+ LE 
Sbjct: 477 QNSGVIEISPDTMMVVRVANVTPAHVPELAQVSDHIREQLKTERAL-LAAEQAGQVALET 535

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL- 569
            K+          +     T  +++R+D   +          F+   E +  +    G  
Sbjct: 536 FKKQDP-----SQVPEGFGTPLEVSRID--PQGLDQAVTDAAFNVSTETLPVYTGVKGSQ 588

Query: 570 SYVVFKVTNSKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            YV+ +V + K G V           L Q   +    +V+  +++Q  VT+     Q  L
Sbjct: 589 GYVLVRVESVKPGDVDNPLLAGLPMQLDQAWGQAEEQAVLEAMRAQAKVTLLPEA-QEAL 647

Query: 628 DGE 630
            GE
Sbjct: 648 AGE 650


>gi|254428426|ref|ZP_05042133.1| PPIC-type PPIASE domain protein [Alcanivorax sp. DG881]
 gi|196194595|gb|EDX89554.1| PPIC-type PPIASE domain protein [Alcanivorax sp. DG881]
          Length = 632

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 116/637 (18%), Positives = 245/637 (38%), Gaps = 37/637 (5%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           + K+ L  + +PF+I G        S    V  V   K+  S      ++   M+ ++  
Sbjct: 1   MGKVLLAAIILPFVISGFYGYFVGGSTGDVVAEVEGSKITRSVVNQRVERVRNMLREQSP 60

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            + N     S    + +LD +V+   +    E   +     +V  +I + PLF  +D KF
Sbjct: 61  NM-NPALLDSFVRPEMVLDGIVNEQLILAAAEQSSMVFSEQQVAADIYKVPLFQ-EDGKF 118

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           S   F   L   G+N + YI    + + +      F+         L++ +R   ++R +
Sbjct: 119 SEQRFERELRARGMNPQSYIQGLRQDMIKEQFRAGFMQTDFSLPSELNEQRRLGEQSRDI 178

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
            Y  L+   +      S+  +  ++++ +  +  PE  ++SY+     +   ++ +++++
Sbjct: 179 RYAQLDINSLRKQFSVSDEEVKAFYDENQGEFMRPEEFKVSYVELSADKYADQVSVTDED 238

Query: 253 LQAEYEKNKEKY----FSPEIRTVEQLVFPNQKE---------ADEAFQSLKKGKKFIQL 299
           ++AEY+  K            R V  ++     +         A EA +++  G+ F   
Sbjct: 239 VKAEYDVRKSIMEEAGAGDAPRQVSHILIEVNDDRDLEQAKVRAREAAKAIAGGESFADA 298

Query: 300 AEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS- 354
           A +     G + S   LG  SK  +P+  + D+I  LA  G  +  +    G  +  V+ 
Sbjct: 299 AAQYSDDSGSAQSGGDLGVVSKGALPE-EMEDAIADLAS-GTVSAPVVTDAGVHLIKVTQ 356

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
                   S  E+   I   ++  +A   + +D  +LEE L     +   + +     + 
Sbjct: 357 EETARALPSLAELSDQIRADLKKARAEALLNDDVAKLEELLYEHADLQSPAEQVGTSVVT 416

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
              VD A  D       ++P  +Q L     ++   + D  + +    Y+ V+I E+   
Sbjct: 417 TDWVDLAAADAP----LSLPQVQQALNSDQVREQGHNSD-LIEVDPTRYIAVRIAENKSP 471

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
                EEV   +++  K     ++V    N+   +   +G +   +    G  +     +
Sbjct: 472 EPMPFEEVSFAIRERLKGEHAMDKVQQL-NEDAQKSIDDGADLAAVADLFGVEVEEQEGL 530

Query: 535 NRMDNE------NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
            R   E      N  FG     +  + PV + +       ++Y V +V +    P+ +  
Sbjct: 531 QRGGAEPSMEVVNGAFGAPRFEEGEASPVALTRLGDGSV-VAYQVTRVADGNAEPLSDAQ 589

Query: 589 KFIS--YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           +  +   L  +  +     V+A L+ +  V +H + +
Sbjct: 590 QQAALVELANVEGQRNFRQVVALLRDEGDVELHPSRL 626


>gi|213019460|ref|ZP_03335266.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212994882|gb|EEB55524.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 578

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 134/603 (22%), Positives = 272/603 (45%), Gaps = 35/603 (5%)

Query: 29  GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88
           G+ + L +      +  VG++ +    +   ++     IS   G  V+ E+ + +  D  
Sbjct: 2   GIGNLLSNDDERKELAKVGKEVITSDEYKLLYQNYKKQIS---GSDVSKEQVKKLKYD-- 56

Query: 89  ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
           +L+ L+    L   I ++GL+     +   I  +  F     +F H+ F   L    I E
Sbjct: 57  LLNALIEQKLLFNLISELGLKVGEESIKSHIKNTKYFQDDKGEFDHNKFHQTLNSLHITE 116

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           KEYI+   K+L     +        P      + +Q  +  ++ R VD + +    +  +
Sbjct: 117 KEYIEKLEKILPAMMFMTSLFKDNYPVTFGEGVDEQIYKNRYQTRVVDIVKITEDAITDV 176

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
            +P +  L   +E+ K N+  PEY+   YI  D    E +I IS++E+ +  E  + K  
Sbjct: 177 PEPDDQALLDLYERNKSNFYYPEYRTAQYISLDQKYFEDQIRISDEEVDSIIEHQELK-- 234

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGK-SLSDISLGSFSKEYIPDV 323
               R +  ++FP +++A+ A ++L++ K  F Q+ EE  K  L +  + + +K+++P+ 
Sbjct: 235 --NQRDIFNVIFPTKEKAEIARRALEESKASFEQIIEEFNKVKLDETRVNNITKDFLPE- 291

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           ++ + +F+L K G+ + V+  +FG+ +  V +I         ++KKDI + +   K+ EK
Sbjct: 292 NMREKVFAL-KTGEVSEVLTSNFGWHVIKVESIHQISDEDLVDLKKDIRSVLTNQKSFEK 350

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           V +   ++   +  G +++EIS    +    +  VD +GKD  G EV         +  +
Sbjct: 351 VNDFINQVNYKIYNGATIEEISNNYNLPIQTIGPVDASGKDQSGNEVGN---SSDFISFI 407

Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
           F ++    K +   + D + + V+I + +P + +  EE      K W++    E +    
Sbjct: 408 FSREKD-QKSYFKGVGD-TVVGVKISDIVPPKLQNFEESRESAIKLWRSEFIKERMFKMG 465

Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
            ++ ++  ++     D+ +  G  L+   QI R +   + + +  I ++F+         
Sbjct: 466 QEVAVQLREK----TDLEEMQGIKLVKGQQIQRNE---QNYPFSFIEEIFNMKTTNSVTD 518

Query: 564 PIE--NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
           PI+  N +   V K  +S  G +   D     +       L + +I+YLKS+Y V V+  
Sbjct: 519 PIQYNNEIIIGVLKQMHSSNGKLNMLDTGKRVMI-----SLKEQLISYLKSKYRVEVNHA 573

Query: 622 LIQ 624
           +I 
Sbjct: 574 MID 576


>gi|320354707|ref|YP_004196046.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123209|gb|ADW18755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus
           propionicus DSM 2032]
          Length = 626

 Score =  326 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 113/643 (17%), Positives = 243/643 (37%), Gaps = 36/643 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML IIRK +++ V +  +V++ + F+ WG+   L      + V  V  +++ +  F  ++
Sbjct: 1   MLNIIRKNAQSIVVQSIVVIIAIVFIFWGVGTNL--NDNPNAVAVVNGKEISYRDFQQNY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ +    Q+ G  +  +   S+G+  ++L+ L+    L Q  E +G+         +I 
Sbjct: 59  ERAIEGYKQQFGGQLPEKFVESLGVKDQVLNQLIQSELLRQGAEKMGMTISKEATQRKIQ 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
              +F  ++ +F  D + + LA+  ++   +       L     V         S   LD
Sbjct: 119 DLEVFRDENGRFDLDRYKTVLAQNRLSPTSFEAGIGNDLLMNRAVESLGAFATVSAAELD 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               F  +   + Y  + +          +A L  W+E+ K  Y+ P   +++Y+ F   
Sbjct: 179 NWVEFLDQEVKLAYTTVRSSAYEPQVKVDDASLQSWYEQTKQQYKTPPQSKLAYLSFPFA 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAFQ 288
           +  K + ++++ +Q  Y+++ E Y +PE R    ++F                 A++   
Sbjct: 239 DDLKAVAVNDEAVQRYYQEHAELYATPEQRRARHILFKIADGDTAETKAAKKAAAEKVLA 298

Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            ++ G  F  LA++  +  S      LG FS+  + +     S+FSL + G+ + V+   
Sbjct: 299 QIRGGGDFALLAKQFSEDTSKEKGGDLGFFSRGQMVEP-FERSVFSL-RTGEISGVVETP 356

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           +GY +  +  IKP+ T S +EV+  I  ++          +      E +    S+ + S
Sbjct: 357 YGYHLVKLEEIKPATTRSLEEVRASIRAELERQGVKAITFKKASTAYEEIIRAGSLTKYS 416

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
            +  +                   + + P   Q  F +            V    G Y  
Sbjct: 417 EKNAVAVHRTDFFQQ--DKPPKDTLISDPAFLQSAFAL----HKGELSSIVETATG-YAI 469

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           + ++++  +   +L  V   V  D+   K+ E   S A Q++    ++ +   D+     
Sbjct: 470 IFVEDARESVVPELAIVRERVAADFIKEKSVELARSAAEQMLKTAKEQQRFPSDV----- 524

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
                +  + R    N                       I  G +  ++++  S+ G   
Sbjct: 525 -ERKESAYLKRTGPANGVPEEIRRDAFARLGQGAFPDKVIVEGNTCYLYQILESRRGQGD 583

Query: 586 EKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                   L Q +       L+   I  L+ +  +  +  ++Q
Sbjct: 584 TDAAKRQALEQQLLAAHKNTLMADWIDQLRKEAKIWTNTKMLQ 626


>gi|254785729|ref|YP_003073158.1| peptidyl-prolyl cis-trans isomerase [Teredinibacter turnerae T7901]
 gi|237683903|gb|ACR11167.1| putative PPIC-type PPIASE domain protein, peptidyl-prolyl cis-trans
           isomerase [Teredinibacter turnerae T7901]
          Length = 624

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 97/634 (15%), Positives = 214/634 (33%), Gaps = 27/634 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVL-FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML+ +R   +  +  + +++   +P +I G+  +       +    V  + +        
Sbjct: 3   MLQSVRDNLKGTIVSVIVILFFILPMVITGVGSSFLGSVAGTDAAVVDGRSITKKELSRE 62

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
              +   +  + G   +++  +   L + +L+ L   A +    E  G+      + G I
Sbjct: 63  IYMQKQRLLAQQGVDPSADYLKDENLAQPVLERLTRKAAVLAAAEKGGMAVSEKSINGAI 122

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
                F   D KFS   + S LAR G+    Y     + +    +          +    
Sbjct: 123 VGQEEFK-VDGKFSSQQYRSLLARVGLTPAAYKAATAEEMMLGQLNKGLELSSFVTEKEK 181

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
            +      E RS   + +    +    + ++A +  +++  +  +R PE   + YI   V
Sbjct: 182 SEIIAIINEKRSFFTVKIPADDLADSIEVTDAEIAAYYQANEAEFREPEKLSVDYIELSV 241

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD--EAFQSLKKGKKFI 297
           +     + +   +++++YE+  E + +    TV  ++      A   E    L  G +F 
Sbjct: 242 NSIAATVTVDEADVRSQYEQEAESFDATPELTVAHILLEEDSSAKLTEVQAKLAAGDEFA 301

Query: 298 QLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            +A+              LG       P+ +   +   L + G+ +  +    G     V
Sbjct: 302 DVAKAYSDDAGSRDQGGELGVLVAGAFPE-AFESAARELGE-GEVSGPVKTDSGTHFIKV 359

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
                    SF+  K  I   +++ KA      + ++L+E       +   ++   I   
Sbjct: 360 LKKDVPEVPSFESRKAAIERSLKVAKAEGIYLSEMEKLDELTFGAPDLSGAAKELGIEVK 419

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
                        G  VA  P      F      D  +    + L     + V+     P
Sbjct: 420 TTQPFQRN----TGLGVAGNPEVRNAAFGDEVLIDNRN-SQVIELAGNRALVVRKNTHSP 474

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
              + LEEV   V       K  + +  KA   + E +K  ++   + ++ G +      
Sbjct: 475 EHIKPLEEVKEQVVSKLTESKLNDLLEEKAETFIAE-AKSSEDLNALAESSGYAYAMFED 533

Query: 534 INRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
           ++R D  +     + +   FS P           P+ +G   VV  V  S       +  
Sbjct: 534 VSRSDPVSDPATRNTV---FSMPLIEGETAFDASPVRDGGYQVVGVVKKSAGTADDMEPT 590

Query: 590 FISYLTQMMNKD----LLDSVIAYLKSQYSVTVH 619
            ++ L   ++++       +  + + +   + +H
Sbjct: 591 QVAGLATQLSRENSRFEGSAFESEVVANADIKIH 624


>gi|58040710|ref|YP_192674.1| peptidyl-prolyl cis-trans isomerase [Gluconobacter oxydans 621H]
 gi|58003124|gb|AAW62018.1| Peptidyl-prolyl cis-trans isomerase [Gluconobacter oxydans 621H]
          Length = 645

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 113/634 (17%), Positives = 253/634 (39%), Gaps = 22/634 (3%)

Query: 1   MLEIIRK-ASRTWVAKIFLVVLFVPFLIWGLSDALFSVS--GSSTVVSVGRQKVPFSSFI 57
           M+  +R     +W  +   +++F+ F+ WG+ D   ++    S+ VV VG + +    F 
Sbjct: 1   MITTLRHLFVDSWAGRAAALLIFLAFIGWGVGDVYSNMGTASSNEVVRVGDRSITPDDFS 60

Query: 58  NSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            +   +L  ++++IG    S+  +     + ++ L NLV            G+      V
Sbjct: 61  RALSAQLPEVARRIGLADPSKLPKGEVEQIARQTLQNLVIQNETQLAAARAGMMVPDDLV 120

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             E+   P FH    +F   VF  RL R G++E + +    + ++   ++      +   
Sbjct: 121 RQEVFAIPAFHNAAGQFDRSVFNDRLTRIGLSEGKLLQAIREDIASRGLLQGMGQSVVAP 180

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           + L D+   F    R  D + +        A P++  L ++++ +   +R  EY+    +
Sbjct: 181 SSLTDRMLSFDASQRIFDLVQIPFASGVVAAAPTDDQLHRFYDNHPQMFRTTEYRHAKMV 240

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           +       K IE+ +D L   Y+     +  PE RT++ L F +Q +AD A  + K G  
Sbjct: 241 VMTSDSVAKTIEVPDDVLHRLYDFQARTFDMPETRTIQVLTFTDQAKADAAATAWKSGTS 300

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +  + ++  ++ + +SL S  +  IP+  LA + F+       +       G+V+ +++ 
Sbjct: 301 WDDIQKKFPEAAA-VSLPSVRQSDIPNPELAKAAFAAPSD-RISGPEKTGMGWVVFNITA 358

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I      +F++ K  +  Q++  +A E ++   K+ ++ +A  +++++I      V    
Sbjct: 359 ITAPHKTTFEQAKDGLKTQVQTQEAGEALQARQKQFQDAVAGSSTLEQIPSDLGAVPAS- 417

Query: 416 PLVDFAGKDVKG--KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
             +D  G    G    +       Q +          ++   +  P+G+   + + E  P
Sbjct: 418 GTLDSNGLTQDGLPAPIPGDAALRQAIIHQIFTQSKGAQPTVINGPNGTAFSLLVDEVHP 477

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
              +  + V   V + W   +       +A  L    +K G   + +     AS L  + 
Sbjct: 478 GTLKPFDSVRDQVVQAWTADQKRHAADMRATAL-FNAAKAGTLRKAVEGQAEASALRQDV 536

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
                + ++    + +  VF         F   +  ++ +  VT  K    ++     + 
Sbjct: 537 AVSRVHPDQSLPQNVLRGVFGLKPGTSGMFESPD--AFWLVNVTADKPASAEDMKSLGNQ 594

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           L+        D  +  ++S   V ++   +++ +
Sbjct: 595 LS--------DEYLQSMRSDIPVALN-AAMEKAV 619


>gi|254507758|ref|ZP_05119889.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16]
 gi|219549283|gb|EED26277.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16]
          Length = 364

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 154/354 (43%), Gaps = 12/354 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+   +   +G +T   VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGAG-NTAAKVGNVEIDRGEFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ +      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLLEQHAASLGLRVSDAQVRT 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D KF  +++ S L R G   + + ++  + L R  ++            
Sbjct: 120 MIVEMPQFQ-VDGKFDQEIYQSSLRRAGFTPESFAEYLRRDLVRNQLLTAIQASDFSLPA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +   + R V  + L      A  + S+  +  ++E+  + Y  PE  +++YI  
Sbjct: 179 EVEAQAKLLTQTREVQTLSLPLDDFAAKVELSDDEIQGYYEQNSERYTRPEQVKVAYIEL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
              + +  I +S+++ +  +E++ +KY S E R V  ++    +Q +A      L  G  
Sbjct: 239 SAQKLKDAITVSDEDAKKYFEEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGTD 298

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           F  LAEE+           SLG   ++ + D +  ++ F+L   GD T ++   
Sbjct: 299 FAALAEEKSDDFGSASEGGSLGWIERD-VMDPAFEEAAFALKNVGDVTGLVKSD 351


>gi|323143442|ref|ZP_08078125.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066]
 gi|322416727|gb|EFY07378.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066]
          Length = 642

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 113/647 (17%), Positives = 242/647 (37%), Gaps = 40/647 (6%)

Query: 1   ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           ML + +R+ ++  + KI   ++ + F+  G+   L     +  V  VG  K+  + +   
Sbjct: 1   MLTDKLREGAQGRIFKILFWIIILSFIFTGVGGYLIPRLNTDPV-EVGEYKITANEWNQQ 59

Query: 60  WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           +  +   + +  G        +      L  +IL+ ++     +  + D+ +     +V 
Sbjct: 60  YTSQTQQMQRMYGARYADMLEDPQYVSNLRSQILEGMIDNVAFNSAVYDLNVRIGDEQVR 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM-RPS 175
             I  +P F  KD KF +D++++ +   G+N + + +        T V    +     P 
Sbjct: 120 ELIRTTPAFQ-KDGKFDNDLYLAVIRNMGMNPEYFGEQMRISAMATSVSDPILRTASYPL 178

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
              +   +    + R++D   LN   + A     +     +++ + D + AP   + +YI
Sbjct: 179 PYEISALENLLTQTRTIDLYELNLDALRAGFSADDNEAKAYYDAHHDAFMAPANVKFNYI 238

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEADEAFQSL---- 290
           L  V E +K I  ++DEL+     +++ +  PE R    ++   +  +A++  +S+    
Sbjct: 239 LLTVDELKKGINPTDDELEEYLTLHQDDFKVPEHRGFSHIIVRSDNPDAEKIVKSIDDGF 298

Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             GK F  LA+E    LS       +G   +  +     AD +F+L   G  T  I  + 
Sbjct: 299 AAGKSFADLAKEYSDDLSTKDIGGDMGEIIRASLA-PIFADKLFALETIGSHTDKIVDAD 357

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEIS 405
           G     +++I         E+K  + N     KA E   E    L +       S+D  +
Sbjct: 358 GTHYLQLNSIVKEHIPQLNEIKDQVKNACIDAKARELFNERVTTLSDMSFENPDSLDVTA 417

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS---KDHTVALPDGS 462
               +   D  +V      V        P    ++      ++ +S       V + D +
Sbjct: 418 DALGVTVADSGVVALGATKV------PWPLNTSMVQNAAFSEENISSGVNSSVVNIGDDA 471

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + + + ES  +  +  +EV  +        K  +E  +  N              D   
Sbjct: 472 ALVLNVYESHESMLKPFDEVKAEAVNAVINDKANKEADACLNTFAKAV------INDSNT 525

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTN 578
            + A ++  + +    +        G+  +F+ P E    + I     N    ++ +V N
Sbjct: 526 EIPAHVVHRSAVTLNRSSADVEPAFGM-ALFAIPQEGQNRYIIASNKGNPTLAILKEVGN 584

Query: 579 SKVGPVQEKDKFI--SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           +       +   I  S L Q  + +L +++    +    +T +++ I
Sbjct: 585 AATTNENAELNQILRSQLVQANSLELRNALYKGARELTEITYNEDAI 631


>gi|255318960|ref|ZP_05360185.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SK82]
 gi|262378304|ref|ZP_06071461.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SH164]
 gi|255303977|gb|EET83169.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SK82]
 gi|262299589|gb|EEY87501.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SH164]
          Length = 623

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 101/637 (15%), Positives = 230/637 (36%), Gaps = 35/637 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  RK  + W+  + L++   P    G+       +  +   +V  Q++      +  K
Sbjct: 1   MESFRKVIKGWLGIVLLILFLTPLAFVGIEGYFSGGNKENVAATVNGQEISKKELESLTK 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                    +    +        + +  LD+L++   + Q  E +G+     ++   +A+
Sbjct: 61  SYKEQYLNFVNG--DETLLNQPFIQQTALDHLIAQNLILQQAEKLGISLSDAQIEQMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P F  ++ +FS  ++ + L   G+  +  I +  +  +   +   FV     S + ++Q
Sbjct: 119 QPSFQ-QNGQFSQTLYENYLRSVGLTSQGLIANLRQDHALKMLNSTFVDYTLVSKVDMNQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +           S   +  +++K+K++++   +  + YI+    +
Sbjct: 178 IANLQTEQRTLFLSSIPLDEYKKNIQVSQQDIANYYQKHKNSFKQTAHVDVDYIVLSPEQ 237

Query: 242 KE-KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLK 291
              K   +++ ELQ  Y    E       R V+ ++            QK A+E +  ++
Sbjct: 238 VNTKAAPVTDAELQQAYANFVEAQNKNAKREVKHILIATSDTRNENQAQKLANEVYAKIQ 297

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEY---IPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            G  F Q A +    +   + G   + Y   +   +   ++  L K    +  +   +GY
Sbjct: 298 GGTNFAQAAAQYSDDIDSKTKGGLIESYQTGVYSEAFDKAVLGL-KANQISQPVKTQYGY 356

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I   +        SF+  K  +A +++ +K +    +    L E +    S+D + +  
Sbjct: 357 HIIQ-AQTLAQNIPSFEAEKSRLAAEIQKSKVANLFTDTVNSLNEMVVSSDSLDVVPQEI 415

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
           K     +  V   G + +   V   P  +  +F    K+   +    + L  G  +WV++
Sbjct: 416 K--GTRIETVKNVGLNTR-HPVLNDPSVKARIFNEDVKNGDRNVTSNLQLATGEAVWVKV 472

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
           ++  P   + L +    +K      K A   ++K   ++ E+  +    + +      + 
Sbjct: 473 RDYQPEGVQSLAQATPAIKTKIIDEKAAGLAAAKLKTMLDEFKTQ--PAQQVLAKHKVAF 530

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFK---VTNSK 580
            +     R    ++    D     FS          V    + N L  V       T S 
Sbjct: 531 QSAGTFTR----SQGLKRDVERAAFSVAAPKSGMWSVTTAALPNELVLVAVANVNKTTSN 586

Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               ++  +      Q+  +  L+    YLKS+  + 
Sbjct: 587 ALTPEQLQELSKLYQQLRGQQELEDYTQYLKSKAKIK 623


>gi|262376134|ref|ZP_06069364.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
 gi|262308735|gb|EEY89868.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
          Length = 621

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 118/637 (18%), Positives = 230/637 (36%), Gaps = 37/637 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  RK  + W+ K+ LV+   P  + G+    FS   S    SV   ++      +  K
Sbjct: 1   MEAFRKVIKGWLGKVLLVLFLTPLALVGIEGY-FSSGNSDAAKSVNGTEISQKELESLTK 59

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                         +        +D+K +D LV+   L Q  E++G+     ++   IA+
Sbjct: 60  SFKEQYLSYANG--DETLLNQSFIDQKAMDTLVARTLLLQQAEELGISLSDQQIEQMIAQ 117

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P F  +D KFS+ ++ + L   G+  +  I+   K  +   +   F+     S + + Q
Sbjct: 118 QPTFQ-QDGKFSNALYENYLKSIGMTNRALIESLRKDHALKMLSSTFLDYPLVSPVEMQQ 176

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R +    +N          ++A +  ++EK+K  ++ P    + Y++    +
Sbjct: 177 IADLQTEQRHIHISSINLDSYKKDVKVTDADIAAYYEKHKTLFKQPTSVDVDYVVLKPSD 236

Query: 242 KE-KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKK 292
            + + + +++ ELQ  Y              V+ ++           +K A E    +K 
Sbjct: 237 IQVQSLAVTDAELQEAYTAFVATQKQAVKPDVKHILITADSRSDAEAKKLATEIAAKIKA 296

Query: 293 GKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           G  F Q A +  +     S G      +E +   +   ++ SL K G  +  +   +GY 
Sbjct: 297 GTTFAQAAAQYSEDPESKSKGGALAVYEEGVFGTAFDQTVSSL-KSGQVSAPVKTDYGYH 355

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           I  V         SF+  K  ++ +    K S    +    L + +    S+D +++  K
Sbjct: 356 IISVQ-TPDVAVPSFESQKARLSEEALAAKKSNAFSDTVNTLNDMVVGSDSLDVVTQEVK 414

Query: 410 IVSI-DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
            V +     V  + +D     V +    +  LF    K+   +   ++ L +G   W+++
Sbjct: 415 GVQVQKAQGVTLSTRD----PVLSDANLKVKLFNNDVKNGDRNASTSIQLANGDVAWIKV 470

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
           +    A ++ L E    VK      K A    +K  + + E+    K         G  +
Sbjct: 471 RNYHAAGEQTLAEAKPRVKAQLIEDKAAALAKAKIQKALDEF----KTKPAAAVAKGDLI 526

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVK---CFPIENGLSYVVFKVTNSKVGP-- 583
                +            D     FS P            +     VV  V+  K  P  
Sbjct: 527 FEDAGV--YTRAEGLLKRDVQRAAFSLPTPKAGHWSVTTAKMPNELVVVAVSEVKKNPVD 584

Query: 584 ---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               +++ + +    Q+  +   D    YLKSQ  + 
Sbjct: 585 VLSAEQRSELVKLYQQLRGQQEFDDYTRYLKSQAKIK 621


>gi|149928383|ref|ZP_01916623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
           MED105]
 gi|149822918|gb|EDM82164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
           MED105]
          Length = 633

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 123/650 (18%), Positives = 256/650 (39%), Gaps = 46/650 (7%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
            E IR   +  +  + L+ +   F ++GL       + ++ +  VG   +    F    +
Sbjct: 1   FEFIRNNQK-IMQFVLLLFIAPAFALFGLEGYNTVSADANALAIVGDYPISQEEFDQVKR 59

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           + +     + G   + +   S  +++++LD LV    L Q ++   L A    +  +IAR
Sbjct: 60  ERIEEARAQSGENFDPKVFESPEINRQLLDTLVLQYLLQQSVQKQYLTASDKALAEDIAR 119

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
           +PLF   D KF  + +   LA  G+   ++  +    L+R  V+   +        L  Q
Sbjct: 120 TPLFQ-VDGKFDLETYKRELAARGLTPTQHEANVRFGLARNQVLDPVLRASFFPETLKTQ 178

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                   R V    ++     A    ++  +  ++E  K  + AP+   + Y++     
Sbjct: 179 LDDVQLAGRVVRVKNIDLAPYLANVSITDEQVAAFYETNKAQFMAPQKADVEYVVLSPDT 238

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------ADEAFQSLK 291
            + KIE+S+ ++ A YE+NK ++ +PE R    ++   +KE          A++    LK
Sbjct: 239 IKSKIEVSDADIAAYYEQNKARFSTPEERRARHILLDAEKEGASADDLKAAAEKVLAELK 298

Query: 292 KGKK-FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
                F +LA+    + G +     LG F K  +       ++FS  KKG+ + ++   F
Sbjct: 299 ANPSKFAELAKQYSIDPGSANQGGDLGFFGKGAMV-PEFEQAVFS-QKKGELSGLVKSQF 356

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEIS 405
           GY I  V+ I+     + ++VK  IA++++  K + +  +   R  E +   G S + + 
Sbjct: 357 GYHIVEVTEIRGGEVQALEDVKTQIADEIKNQKMTAQFADAQGRFTELVYEGGQSFENVV 416

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
           +   + +       F G          +    +++  +F  D   +K++T A+  G  M 
Sbjct: 417 KALGVQAQT-----FNGLTQGAANAPEVLKDAKVIAEIFSSDSIENKNNTKAVQVGETMV 471

Query: 466 -VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL----EYSKEGKN-FRD 519
             +I     A  R LEE+   ++   K  + A+     A+ L      E  + G +    
Sbjct: 472 SARIVNYTAAAARPLEEMKPVIQARLKQEEAAKAALKDADALAAKLDSEKPQAGSDLLTG 531

Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
              +   S L+   +  +  ++      G+S++    V  +          Y V  V +S
Sbjct: 532 FADSKTVSALSAEGLPGLVAQSVL--NTGVSELPKAKVIGLGN------NGYAVAWVESS 583

Query: 580 KVGP---VQEKDKFISYLTQMMNKDLLDSVI----AYLKSQYSVTVHDNL 622
                   +   + + Y   +  +   ++++      +K +  V +    
Sbjct: 584 APSSEVKAKADPQVVQYYENIAGQVYQEALLLAARDAMKKRVEVEIKKTF 633


>gi|294011597|ref|YP_003545057.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium japonicum UT26S]
 gi|292674927|dbj|BAI96445.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium japonicum UT26S]
          Length = 649

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 252/643 (39%), Gaps = 18/643 (2%)

Query: 1   MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFS 54
           ML + R+  R+    + A IFL ++   F++  ++   F   + G  T    G  ++  +
Sbjct: 1   MLSVFRRFIRSKLGAFAALIFLGIIAAAFIMGDITSGNFGSSMGGGETAARAGGSRLTMT 60

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
              +  ++      +    +   +     G   ++ D LV+  TL ++  D  +      
Sbjct: 61  ELQDRVQRVFENARRSNPGLQIGDFLAQGGA-AQVYDQLVASMTLKEYASDQKVHISKRL 119

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V  +IA+ P F      FS + F   L RE I E+   D  ++ +    ++     G++ 
Sbjct: 120 VDAQIAQIPAFQDAAGNFSQENFRQLLLRERITEQALRDDISREILERQMLAPLGLGVKL 179

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           ++ ++        E R     V+       IADP++A L  ++ K    Y  PE +RI Y
Sbjct: 180 TDSMVLPYASLLLEARQGTIAVIPATAFKDIADPTDAQLDDFYRKNAARYTIPEQRRIRY 239

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
            + D     +  + ++ E+ + Y +NK  Y + E R+ EQL+ P Q  A      +K GK
Sbjct: 240 AVIDAERFAQAAQPTDAEIASYYNQNKAAYAAKESRSFEQLILPTQAAAKAIADQVKGGK 299

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
                A+  G S+S++   S         +   +    AK+G+    + GS G+V+  V+
Sbjct: 300 SLAAAAQSAGLSVSELKDQSREALASAASAAVANAGFAAKQGELAGPLRGSLGWVLLRVT 359

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
            ++ +   +   V+ +I   +R  K    + +   ++E+ +A G S DE+ +   +    
Sbjct: 360 AVRTTPARALAAVRDEIVAALRAQKEKRLLNDFTGKIEDQIANGGSFDEVVKDNGLKLET 419

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
            P +  +GK V+          + LL  VFG            + +  Y      +   A
Sbjct: 420 TPFLVSSGKQVEDAAYQVPADVKPLLAPVFGMSQDDDAQLVPIVAEKRYALAAPGDIQAA 479

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
               L +V   V   +K  +  E+  + A Q+  + +K G    +   + G +L     +
Sbjct: 480 APPPLAKVKPLVAMQYKLAQGNEKAKALAEQIRAKVAK-GMKLDEAVASAGIALPRPQVV 538

Query: 535 NRMDNE---NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
                +   +       ++ +F+     VK  P      Y V ++   K G        +
Sbjct: 539 GGRRADIMRDGQRPPAEVAMLFTMATNSVKTLPAGQDRGYFVVQLNGIKRGDAGSDKALV 598

Query: 592 ----SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL---IQRYL 627
                 L++++ ++        ++ +  V    N    +QR L
Sbjct: 599 NQVRDQLSEVVGQEYGQQFERAVEKELGVKRSPNAVASVQRAL 641


>gi|299770348|ref|YP_003732374.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. DR1]
 gi|298700436|gb|ADI91001.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. DR1]
          Length = 621

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 107/631 (16%), Positives = 220/631 (34%), Gaps = 25/631 (3%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ L++   P  + G+       + +    +V  Q++         +
Sbjct: 1   MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                    +    +        +  K LD LVS   L Q  E +G+     ++   +A+
Sbjct: 61  SYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDTQIEQMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P    ++ +FS  ++ + L   G+  +  I    +  +   +   F      S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTSTFSDYSLVSKVDLMQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +           SN   T ++ K+++ ++      + Y++     
Sbjct: 178 IANLQTEQRTLHLASIKLDGYKTGLTASNQEATDYYNKHQNEFKQQSSVDVDYVVVSPSL 237

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKKG 293
             K    +  ELQ  Y K  E       RTV+ ++           QK A E +  ++ G
Sbjct: 238 MAKPAPATEAELQQAYSKFVETQKKDAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGG 297

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F Q A +  +  S  + G   + Y P V   +   ++ SL K G  +  +   +GY I
Sbjct: 298 LTFAQAASQFSEDPSSKAKGGLVEAYAPGVFSDAFDKTVVSL-KNGQISQPVKTQYGYHI 356

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
              +  + S   SF+  K  +  ++   K +    +    L E +    S++ + +  K 
Sbjct: 357 IE-AETQASQIPSFEAEKARLTAEVEKNKVATVYSDTVNSLNETIVGNDSLEAVVQEVKG 415

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             ++                 + P  +  LF    K+   +    + L +G  +WV++++
Sbjct: 416 TKVE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
              A  + L + + + K      K  + V +K   ++ E+  +      +      +  +
Sbjct: 473 YHAAGVKPLAQAMNEAKAKVIDEKARKAVQAKIATMLAEFKTQ--PADQVVAKNKVAFES 530

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-EMVKCFPIENGLSYVVFKVTNSKVG---PVQE 586
               +R     +       S     P    V    + N L  V     NS      P  +
Sbjct: 531 AGVFSRSQGLKREIERAAFSATTPKPGMWSVTTANLPNELVVVAVSNVNSSAANAIPADQ 590

Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             +      Q   + +L+    YLKS   + 
Sbjct: 591 LQQLKQLYRQSRGQQILEDYSQYLKSHAKIK 621


>gi|213582060|ref|ZP_03363886.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 405

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 86/414 (20%), Positives = 188/414 (45%), Gaps = 16/414 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D+      + R V   V++   + A    ++  ++ ++++ K  +  PE  R+SYI  
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D      +  +S+ ++QA Y+++ +++  PE      +    + +A     +L KG+ F 
Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E+   +    +   +G   +       L ++   L +KG  + VI  S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
            +I+P+      EV+ DIA +++  KA +      +++ +  A     + ++  
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGA 405



 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 9/148 (6%)

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
            ++R +    K ++D K + + L  G     +++     S D+      G     +E A 
Sbjct: 267 ERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKE---KSTDIISARNGGDMGWLEESAT 323

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
           +P  +    +  G+   + K          ++  ++ +  PA+ + L EV  D+    K 
Sbjct: 324 VPELKNAGLKEKGQISGVIKSSV------GFLVARLDDIQPAKVKPLSEVRDDIAAKVKQ 377

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDI 520
            K  +   +   ++    S + ++    
Sbjct: 378 EKALDAYYALQQKVSDAASNDNESLAGA 405


>gi|239994001|ref|ZP_04714525.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           macleodii ATCC 27126]
          Length = 528

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 93/538 (17%), Positives = 200/538 (37%), Gaps = 26/538 (4%)

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q   D+GL     ++   I + P F     +F ++ F + L + G    ++ D+    ++
Sbjct: 1   QQATDMGLRVSDKQIRETITQMPEFQF-GGQFDNERFQAILRQNGFQVADFRDYLRVQMT 59

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
           +  +           +  + QA     + R   Y+++++       + ++A +  ++   
Sbjct: 60  QNQLAAALTNSSFALDGEVQQANALQRQTRDAKYVLVSSDEFAGSIEVTDADVEAFYNNN 119

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-- 278
             ++   E  +++Y+   V + + ++ +  + ++  YE N   Y   E R V  ++    
Sbjct: 120 IASFDTDEQVKLAYVKLSVDDLKDRVSVDEEAVRTYYENNLGSYGKEEERRVSHILIEAG 179

Query: 279 -----NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIF 330
                 + +A+     L  G  F  LAE           G    F    + D +  ++ F
Sbjct: 180 DDADAAKAKAESLKAELDNGADFAALAEADSDDTFSAENGGDLDFITPEMMDPAFDEAAF 239

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +L   GD + V+   FG+ I  ++++K +   SF EV  +I + +    A EK  E    
Sbjct: 240 ALQNVGDVSDVVETEFGFHIIKLTDLKEAQVKSFDEVAGEIRDTLLYDAAMEKYFELQNT 299

Query: 391 LEEFLAL-GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
           L E       ++++ +    +   +  +              + P    + F     D+ 
Sbjct: 300 LAEIAFEVPDTLEDAANAVDLPVQESVVFSRNTAPAD----LSFPGLLDVAFSSELIDEG 355

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
           L+ D  + L D + +  ++ E  P R + LEEV   ++   K  K+ E   + A  +  +
Sbjct: 356 LNSD-IIELDDETVVVARVIEHQPQRTQSLEEVREGIEASVKAEKSKEAAEAWAFDI-AQ 413

Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
             + G++          S  T   + R            +  +FS  +E      +   +
Sbjct: 414 KVRAGESVESELAEKSVSWETAAAVPRA---GGTLARALVDTLFSLALEGEDKVDVATTV 470

Query: 570 S--YVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
           +    V  + N    P  E    +     L Q+  + +    I  L++   VT+   L
Sbjct: 471 NGDVAVVMLENVNAAPELENELGESLKQRLAQVQGQRVYQQYIDALRANAEVTISQTL 528


>gi|209542341|ref|YP_002274570.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530018|gb|ACI49955.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 643

 Score =  323 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 125/639 (19%), Positives = 263/639 (41%), Gaps = 22/639 (3%)

Query: 1   MLEIIRKA-SRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFI 57
           M+  +R A   +W+ +I   +LF+ F+ WG+ D L ++    +  V  VG Q +   SF+
Sbjct: 1   MISFLRHAFVDSWLGRIIAGLLFLAFVGWGVGDVLSNIGSERADVVARVGDQTITTDSFL 60

Query: 58  NSWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           ++ + EL  +++++G    S+   A      +++L  LV+ + +      +G+      +
Sbjct: 61  SAVQNELQQLARQMGVGDPSQIPAAARGQAAQQVLQRLVTQSEMILAAGRLGVTVPDDVL 120

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             E+    +F G D +F   +F SRL + G+ E   +D     L+   +V     G R  
Sbjct: 121 RDEVFGLQIFKGPDGRFDRALFDSRLRQIGMTEARLLDIVRTDLAVRALVEPLQSGARAP 180

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            +++ +A  F  + R++D + +          P  A L ++++ +   +R PE++    +
Sbjct: 181 EVMVRRAFDFGAQARTIDLVRIALGD-QGTPAPDTATLRRFYDNHPWLFRLPEFRHARIV 239

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           +       + I+I + EL+  Y+  + KY  PE R+V+ +  P+Q  A       + G  
Sbjct: 240 VLSPDTVARSIDIPDAELRRLYDAQQSKYHVPETRSVQIVTAPSQARAQAIAAQWQAGAD 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           + ++ +   K  + + + +  +  IP   LA  +F+ A        +    G+V+  V+ 
Sbjct: 300 WAKI-QSGAKDSAAVGMDNVRESAIPSPGLAKLVFA-APASVLQGPVQTDTGWVVFRVTQ 357

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           + P     F   ++++ +QM  T+A++ V    ++L++ +A G  +D I      V+I  
Sbjct: 358 VTPPHDTDFATARQELRDQMAQTQAADLVGPRVQKLQDAIAGGG-LDRIPDNLGAVAI-A 415

Query: 416 PLVDFAGKDVKGKEVA---AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
             +D  G+   G+      +   +  ++ R+F +    +    V  PD ++  V +    
Sbjct: 416 GTLDEQGRTQAGEPAPVPGSDALRRAIVARIFAQAKGAN-PTLVQGPDNAWFAVAVDSVE 474

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           P + R  + V    +  W+        + +A  L L     G      G      +L   
Sbjct: 475 PGQLRPFDAVPDQGRSAWEDESRRHTANVQATALYLAAKAHGGVAAAAGPGQ--QVLHPA 532

Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKD 588
            + R          +    VF       +   ++    + V  +T            + D
Sbjct: 533 PLGRGQQIEGV-PDELARLVFRLGAAG-QTVMLDEPDGFYVATLTAITHPDPATQPMQVD 590

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           +  + L+Q +  D+  S  A L+       +   +Q  L
Sbjct: 591 RIRTGLSQAIANDIGLSYAATLQQAVKPKTNMGALQSAL 629


>gi|103486661|ref|YP_616222.1| hypothetical protein Sala_1173 [Sphingopyxis alaskensis RB2256]
 gi|98976738|gb|ABF52889.1| hypothetical protein Sala_1173 [Sphingopyxis alaskensis RB2256]
          Length = 673

 Score =  323 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 113/639 (17%), Positives = 234/639 (36%), Gaps = 16/639 (2%)

Query: 1   MLEIIRKASRTWVAKI----FLVVLFVPFLIWGL-SDALFSVSGSSTVVSVGRQKVPFSS 55
           M+  IR    + + K     F+V++ V F +  +  ++ F   G + V  VG +++    
Sbjct: 26  MITAIRAMFSSTIGKFLALAFVVLVGVAFALSDVTGNSTFGGIGGANVAKVGGEEIGVGE 85

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +  +Q      +    +  +    + GLD ++L  L+ G   DQ+  ++G       +
Sbjct: 86  LRDRVRQAYDQARRNQPGLTMAAFVENGGLD-QVLGQLIDGLAFDQYATELGFGVSKRLI 144

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
            G IA  P F G   KF   VF + L + GI+E +      + +    +        R +
Sbjct: 145 DGRIADLPAFAGVSGKFDQTVFENFLRQNGISEAQLRRDLRQQILLEQLAAPIAQMPRIA 204

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
             L +       E R      +         DP +A L ++  +    +  PE + I Y 
Sbjct: 205 PALAEPYAALLLEQRRGQATFIPASAFAPKGDPGDAALRRFLTQNAAKFTVPERRVIQYA 264

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           +FD         +++ E+   Y+ N  +Y + E R   Q++ P+Q  A+     ++ G  
Sbjct: 265 MFDRASVPVPA-VTDAEIARVYKDNAAQYAATETRRFAQVILPDQAAANRLAAKVRSGAS 323

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
               A E G S S       S       +        AK+G+    +    G+ +  V +
Sbjct: 324 LASAAAEAGLSASTTGDLGQSAYAATTSAAVARAAFAAKRGEVVGPLQTGLGWTVVRVED 383

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           +      S  +   +I  ++   KA+E + + Y  +++ +  G S++EI+   K+  ++ 
Sbjct: 384 VTTRPARSLADASAEIRAELASNKANEAIVDYYNAIQDAVNSGASIEEIATDRKLQIVET 443

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
           P +   G+               L+ + F             + +  +    +K  I A 
Sbjct: 444 PAILPNGRAPGQPGFTLAADLAPLVAQAFQVGGEGEGQIATIVENEKFAVFAVKSIIAAA 503

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
                ++  ++  +W+  +  +    KA  +     + GK+  +     G ++     I 
Sbjct: 504 PPPFAQIRGELLSEWRFAEGQKVARDKARAI-ARAVEGGKSLNEAVAAAGPNIGNVQAIG 562

Query: 536 RMDNENKFFG---YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-----PVQEK 587
               E    G      ++ +FS     VK   I     ++V  +   +         +  
Sbjct: 563 GRRAELGANGERVPPELALLFSMAEGSVKTLEIPGNRGWMVIALDEVRRPDPKAIEPERV 622

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                 L      +LL+ + A  + +  VT++  L+ + 
Sbjct: 623 AAIARPLAPAFGNELLEQLAAEARRRVGVTINKGLVDQL 661


>gi|58698918|ref|ZP_00373781.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58534569|gb|EAL58705.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 578

 Score =  323 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 121/594 (20%), Positives = 259/594 (43%), Gaps = 30/594 (5%)

Query: 8   ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
             + +  K+ +V+L    +  G+ + L        V  VG++ +    + + ++     I
Sbjct: 2   NVKNFFTKVTVVLLACLLIFVGVGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQI 61

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
           S   G   + E+ + +  D  +L+ L+    L     ++GL      +   I  +  F  
Sbjct: 62  S---GSDASREQVKKLKYD--LLNALIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQN 116

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKR 184
              +F  + F   L    + EKEYI    K+L     +        P      + +Q   
Sbjct: 117 DKGEFDKNKFHETLNDLHMTEKEYIAKLEKILPAMMFMTSLFKDNYPVTFGEKIDEQIYN 176

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
             ++ R VD + +    V  I +P +  L   +E+ K ++  PEY+   YI  +    E 
Sbjct: 177 SRYQTRVVDIVKITEDAVTNIPEPDDQTLLDLYERNKSHFYYPEYRTAQYISLEQKYFED 236

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303
           +I+IS++E+    E+ + +    + R +  ++F  ++EA+ A ++ ++GK  F Q+ EE 
Sbjct: 237 QIKISDEEVDGIIEQQELR----DQRDIFNIIFSTKEEAETARRAFEEGKTSFEQIVEEF 292

Query: 304 GKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           GK+ L +  + + +K+++P+  + + +F+L K G+ + V+  SFG+ I  V +       
Sbjct: 293 GKAELEETRVNNITKDFLPE-DMREKVFAL-KVGEVSEVLASSFGWHIIKVESAHQISDE 350

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
              ++KKDI + +   K+ E+V +   ++   +  G++++EI     +    +  VD +G
Sbjct: 351 DLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSAIEEILSEYNLPIQTIGPVDASG 410

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
           KD  G  V        L+  +F ++    K +   + D + + V+I + +P + +  EE 
Sbjct: 411 KDQSGNNVGD---SSDLISFIFSREKD-QKGYFKGVGD-AVVSVKIIDIVPPKSQSFEEG 465

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
                + W++    E +     +  ++  ++     D  K  G  L+   Q++R +   +
Sbjct: 466 RASAVELWQSEFIKERMFKIGQEFAVQLREK----TDWEKIQGVELVEDQQMHRNE---Q 518

Query: 543 FFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISYL 594
            + +  + ++F+         PI+  N +   V K  +S  G +   D     +
Sbjct: 519 NYPFSFVEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNMLDTGKRVM 572


>gi|88798823|ref|ZP_01114406.1| peptidyl-prolyl cis-trans isomerase D, putative [Reinekea sp.
           MED297]
 gi|88778586|gb|EAR09778.1| peptidyl-prolyl cis-trans isomerase D, putative [Reinekea sp.
           MED297]
          Length = 610

 Score =  323 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 109/631 (17%), Positives = 247/631 (39%), Gaps = 32/631 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R ++R    K+ + ++ + F ++G    + S++G+S   +V  + +    +    
Sbjct: 1   MLDALRNSARGTAGKVIVGLIVITFTLFGAESII-SIAGNSAPATVNGEDISEVEYQRLL 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +    ++ + G    ++   S  +  +I+++L+S     Q  + +  +A   +V    A
Sbjct: 60  SRRQQELTSQFGAEAAAQLMNSSFVTDEIIESLISQELQMQLADKLAFDASEDQVVQSFA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   D +FS D +++ LA  G N + ++    +  +                  +D
Sbjct: 120 DIPAFQ-IDGEFSQDRYLNVLAANGFNHQSFVAAQKEQAALAQFQSGVANSAFVVEKAID 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      + RS  Y    +++  A  + S+  L  ++E+ ++ + + E  ++ Y+   + 
Sbjct: 179 RYANLIAQERSFQYKAFESQNYLAQVEVSDGELRDYYEQNQEQFLSEESVKVRYLTISLD 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----QKEADEAFQSLKKGKKF 296
              ++  ++  E+Q+EY+          +R +  ++F +    Q EA  A   L +G++F
Sbjct: 239 SLAEQQSVTEQEIQSEYDSYVASLNEDNVREISHILFADGDDNQAEAQAALTRLNQGEEF 298

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             LA E          G    E IPDV      D+   L++ G  +  +   +G  +  +
Sbjct: 299 ADLASELSDDPGSAEFGGSLGELIPDVYVDEFYDAALELSEVGQVSAPVETQYGVHLIRL 358

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
             +  S      EV+ ++   +R  KA E++     +L +      +++E++   +   I
Sbjct: 359 DALNASDPEPLSEVRDELVADIRERKAQEELLLVESQLSDAAFSTDTIEEVAELFQTEVI 418

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
               +  +  D       A+   EQ       +D  +     V L + S + +Q +   P
Sbjct: 419 SSDWITRSAADTPFDNPEAL---EQAFSAQVIEDGLI--SSVVRLENSSLLALQKEAYAP 473

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
                 E V+ +V+      K  E + S+   ++     +G               T + 
Sbjct: 474 EDVESFEAVVEEVRTILTAEKAEELMHSEMASVIETQQIQGDG-----------WETADA 522

Query: 534 INRMDNENKFFGYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
           I R ++E        +S+ F  P     +V      + ++YVV   + +   P  E+ + 
Sbjct: 523 ITRNNSE---LPSAVVSKAFELPQPIDGLVLGETSGDSVAYVVALTSVTNAAPDTEQREM 579

Query: 591 ISYL-TQMMNKDLLDSVIAYLKSQYSVTVHD 620
            + L    +       +    +++  +TV  
Sbjct: 580 ATALVENRIGGSQYQIIYNQARNKADITVRR 610


>gi|301594637|ref|ZP_07239645.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB059]
          Length = 606

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 106/620 (17%), Positives = 214/620 (34%), Gaps = 33/620 (5%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
            LV+   P  + G+       + +    +V  Q +         ++        +    +
Sbjct: 1   LLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQRYKEQYLAAVKG--D 58

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
                   +  K LD LVS   L Q  E +G+     ++   +A+ P    ++ +FS  +
Sbjct: 59  ESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQQPSLQ-ENGQFSQKL 117

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           + + L   G+  +  I    +  +   +   F      S + L Q      E R++    
Sbjct: 118 YENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQIANLQTEQRTLHLAS 177

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
           +      A    SN   T ++ K+++ ++ P    + Y++       K    ++ EL+  
Sbjct: 178 IKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPAPATDAELKQA 237

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------GKKFIQLAEEQGKSLS 308
           Y K  E       R V+ ++       D A Q L K        G  F Q A +  +  +
Sbjct: 238 YAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPT 297

Query: 309 DISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
             + G   + Y P V   +   ++ SL K G  +  +   +GY I   +  + +   SF+
Sbjct: 298 SKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHIIE-AETQANQIPSFE 355

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
             K  +  ++   K +    +    L E +    S+D + ++ K   I+           
Sbjct: 356 AEKPRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKGTKIE---SLNGVTLA 412

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
                 + P  +  LF    K+   +    + L +G  +WV++++   A  + L + + +
Sbjct: 413 TQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNE 472

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
           VK      K  +   +K   ++ E+  +      +      +  +     R    ++   
Sbjct: 473 VKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFESAGVFTR----SQGLK 526

Query: 546 YDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQM 597
                  FS P        V    + N L  V     NS      P  +  +      Q 
Sbjct: 527 RAIERAAFSVPAPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAMPADQLQQLKQLYRQS 586

Query: 598 MNKDLLDSVIAYLKSQYSVT 617
             + +L+    YLKS   + 
Sbjct: 587 RGQQILEDYSEYLKSHAKIK 606


>gi|162147717|ref|YP_001602178.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786294|emb|CAP55876.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 643

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 125/639 (19%), Positives = 263/639 (41%), Gaps = 22/639 (3%)

Query: 1   MLEIIRKA-SRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFI 57
           M+  +R A   +W+ +I   +LF+ F+ WG+ D L ++    +  V  VG Q +   SF+
Sbjct: 1   MISFLRHAFVDSWLGRIIAGLLFLAFVGWGVGDVLSNIGSERADVVARVGDQTITTDSFL 60

Query: 58  NSWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           ++ + EL  +++++G    S+   A      +++L  LV+ + +      +G+      +
Sbjct: 61  SAVQNELQQLARQMGVGDPSQIPAAARGQAAQQVLQRLVTQSEMILAAGRLGVTVPDDVL 120

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             E+    +F G D +F   +F SRL + G+ E   +D     L+   +V     G R  
Sbjct: 121 RDEVFGLQIFKGPDGRFDRALFDSRLRQIGMTEARLLDIVRTDLAVRALVEPLQSGARAP 180

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            +++ +A  F  + R++D + +          P  A L ++++ +   +R PE++    +
Sbjct: 181 EVMVRRAFDFGAQARTIDLVRIALGD-QGTPAPDTATLRRFYDNHPWLFRLPEFRHARIV 239

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           +       + I+I + EL+  Y+  + KY  PE R+V+ +  P+Q  A       + G  
Sbjct: 240 VLSPDTVARSIDIPDAELRRLYDAQQSKYHVPETRSVQIVTAPSQARAQAIAAQWQAGAD 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           + ++ +   K  + + + +  +  IP   LA  +F+ A        +    G+V+  V+ 
Sbjct: 300 WAKI-QSGAKDSAAVGMDNVRESAIPSPGLAKLVFA-APASVLQGPVQTDTGWVVFRVTQ 357

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           + P     F   ++++ +QM  T+A++ V    ++L++ +A G  +D I      V+I  
Sbjct: 358 VTPPHDTDFATARQELRDQMAQTQAADLVGPRVQKLQDAIAGGG-LDRIPDNLGAVAI-A 415

Query: 416 PLVDFAGKDVKGKEVA---AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
             +D  G+   G+      +   +  ++ R+F +    +    V  PD ++  V +    
Sbjct: 416 GTLDEQGRTQAGEPAPVPGSDALRRAIVARIFAQAKGAN-PTLVQGPDNAWFAVAVDSVE 474

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           P + R  + V    +  W+        + +A  L L     G      G      +L   
Sbjct: 475 PGQLRPFDAVPDQGRGAWEDESRRHTANVQATALYLAAKAHGGVAAAAGPGQ--QVLHPA 532

Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKD 588
            + R          +    VF       +   ++    + V  +T            + D
Sbjct: 533 PLGRGQQIEGV-PDELARLVFRLGAAG-QTVMLDEPDGFYVATLTAITHPDPATQPMQVD 590

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           +  + L+Q +  D+  S  A L+       +   +Q  L
Sbjct: 591 RIRTGLSQAIANDIGLSYAATLQQAVKPKTNMGALQSAL 629


>gi|90416122|ref|ZP_01224055.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium
           HTCC2207]
 gi|90332496|gb|EAS47693.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium
           HTCC2207]
          Length = 618

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 113/627 (18%), Positives = 231/627 (36%), Gaps = 22/627 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  R   +  +A   ++++ + F   G+     S SG+ T V V  +KV   S + + 
Sbjct: 1   MLDSFRHNMKG-IAFGIVILIAIVFAFSGIGSLSMSGSGADTAVIVNGEKVTELSVLRAI 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E   I  +    +++       +  ++++ L+    L Q  +  G+          + 
Sbjct: 60  SSEKRRILNE-NEGLDASLLEDELIRPQVVEQLIGRRLLSQAAKSGGMGISSRTTSKLLL 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P F  +D +F  D+++  +  +G     +++     L     V  FV     +   LD
Sbjct: 119 GTPAFLSEDGRFDQDLYLYTIRAQGYTSGTFLEMLRDDLLIEQYVRGFVASGFVTASELD 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                  + RS  Y+ L  +      D S+  +  ++E     Y+APE   I YI  +  
Sbjct: 179 LIASITEQQRSYYYLTLPLQPAVDAVDLSDEQIATYYEDNNQRYQAPEQVIIDYIELNPE 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKKGKKFIQ 298
                  ++ +++ A YE+ ++   S   R    ++   P+     E  + L  G+ F  
Sbjct: 239 LFSATQSVAEEQILARYEEQRDSLESTTSRQAAHILLAQPSDDVLAEINEKLAAGEAFEA 298

Query: 299 LAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+E  + +        LG  S +  P+ S   ++ +L + G+ +P +    G  +  + 
Sbjct: 299 LAKEYSEDVGSADFGGDLGYTSGDTFPE-SFETALEAL-QVGEVSPPVSTDSGIHLIKLL 356

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           +I+    V F   +  I  ++        + E    L+E      ++ EI+   ++ +  
Sbjct: 357 DIQE-KIVDFDSERARIEQELVTELTDVWLVEKLANLKELSYNAENLAEIATDLELTAQI 415

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
                 AG    G  ++A P   +  F     +D  + D  + L D  Y+ +++ +SIPA
Sbjct: 416 SEPFTRAG----GAGISANPAVYKAAFSSQVLEDSYASD-VLELGDDRYVVLKLNKSIPA 470

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           R + L EV   V            ++++  +L+      G++   + K            
Sbjct: 471 RQKALSEVRGAVVASLTDQLARANLATRGAELLARVD-SGEDIETVAKAEDLEWQVVLDA 529

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDK 589
            R              Q+ +   E +          +VV  +T+ + G        +K  
Sbjct: 530 KRSTGGTNNEIKRFAFQLPATATEDLIESFYARSGDFVVLALTSVEAGDSSKLSEDQKAS 589

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSV 616
                        L +V   L+    V
Sbjct: 590 LSYAGVSSTGGRELQAVQKSLRDNADV 616


>gi|269102133|ref|ZP_06154830.1| peptidyl-prolyl cis-trans isomerase PpiD [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162031|gb|EEZ40527.1| peptidyl-prolyl cis-trans isomerase PpiD [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 565

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 108/568 (19%), Positives = 224/568 (39%), Gaps = 29/568 (5%)

Query: 67  ISQKIGFVVNSERA---RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
           +  ++G   ++            + +L+ +++   + +   ++GL     ++   I   P
Sbjct: 1   MQAQLGENFSNLLGNPQYVQQFRRSVLERMINDVLIQKRAHELGLRVSDQQIRDAIFAMP 60

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
            F   D KF+++ +   L R GI  +++ +     L R   +G   G     +  +++ +
Sbjct: 61  EFK-VDGKFNNEQYNQLLRRSGITPEQFAESLRTDLLRQQFLGAIEGSDFALSGEVNELR 119

Query: 184 RFYFENRSVDYIVLNNRHVPAIAD--PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
               + R +  + LN       A+   +      ++E+    +  P   ++SY+     +
Sbjct: 120 MLESQERVIRTLTLNLADFTKKAEASITEEQEKAFYEQNPQQFTRPAQVKVSYVEITGDK 179

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKKGKKF 296
            +  IE+S+   QA Y ++K+K+ +PE R V  ++       ++++A+     LK G  F
Sbjct: 180 LKDSIEVSDA--QAYYNEHKDKFSTPEKRQVSHILITGDSAASKEKAEAILAQLKDGANF 237

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            +LA++             L  F K  + D +  D+ F+LAK GD + V+  SFGY I  
Sbjct: 238 AELAKKDSDDKFSAKDGGKLEWFEKG-VMDPAFEDAAFALAKPGDLSGVVKSSFGYHIIL 296

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIV 411
           +  I+P+    F +VK +I   ++  KA ++      +L E       S+DE +   K  
Sbjct: 297 LDGIEPAKAKPFADVKAEIIADIKSQKAGDEFYAMQTKLAETAFESPDSLDEAAEAVKA- 355

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
              +   DF  +      V   P   Q L     ++D ++ D  + +     + V++ ++
Sbjct: 356 --KVHATDFFSEQT-APGVLNNPKVLQALQSPEVREDGMNSD-AIEVGPEHVVVVRVDDA 411

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
                   ++V   VK         ++   KA++LV +  ++GK+  +     G S    
Sbjct: 412 RDETVLPFKDVEAKVKSLLAQRDGEQQAQKKADELVAQL-RDGKS--EQLTKEGYSFSGE 468

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV--FKVTNSKVGPVQEKDK 589
             I R   + +                         G   +V   KV +  V       +
Sbjct: 469 QTITRSGPDYQVSQVAFRLAKPQAGKATYGVTRDAKGNVLIVQLDKVIDQDVAKEAADPQ 528

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           F   + QM  +  + + I  L+    ++
Sbjct: 529 FAQQVEQMNAQQDMATTIQTLRETADIS 556


>gi|293608199|ref|ZP_06690502.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828772|gb|EFF87134.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 621

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 103/635 (16%), Positives = 220/635 (34%), Gaps = 33/635 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ L++   P  + G+       + +    +V  Q++         +
Sbjct: 1   MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                    +    +        +  K LD LVS   L Q  E +G+     ++   +A+
Sbjct: 61  SYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P    ++ +FS  ++ + L   G+  +  I    +  +   +   F      S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +           SN   T ++ K+++ ++      + Y++     
Sbjct: 178 IANLQTEQRTLHLASIKLDAYKTGLTASNQEATDYYNKHQNEFKQQASVDVDYVVLSPSM 237

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKKG 293
             K    +  ELQ  Y K  E       RTV+ ++           QK A E +  ++ G
Sbjct: 238 MTKPAPATEAELQQAYAKFVETQKKDAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGG 297

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEY---IPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F Q A +  +  S  + G   + Y   +   +   ++ SL K G  +  +   +GY I
Sbjct: 298 LSFAQAASQFSEDPSSKAKGGLVEAYASGVFSDAFDKTVLSL-KNGQVSQPVKTQYGYHI 356

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
              +  + +   SF+  K  +  ++   K +    +    L E +    S++ + +  K 
Sbjct: 357 IE-AETQANQIPSFEAEKARLTAEVEKNKVATVYSDAVNSLNETIVGNDSLEAVVQEVKG 415

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             ++                 + P  +  LF    K+   +    + L +G  +WV++++
Sbjct: 416 AKVE---SLNGVTLATQNPYLSDPSVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
              A  + L + + + K      K  +   +K   ++ E+  +      +      +  +
Sbjct: 473 YHAAGVKPLAQAMNEAKAKVIDAKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFES 530

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582
               +R    ++    +     FS          V    + N L  V     NS      
Sbjct: 531 AGVFSR----SQGLKREIERAAFSLATPKPGMWSVTTANLPNELVVVAVSNVNSSAANAI 586

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           P  +  +      Q   + +L+    YLKS   + 
Sbjct: 587 PADQLQQLKQLYRQSRGQQILEDYSQYLKSHAKIK 621


>gi|328953890|ref|YP_004371224.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454214|gb|AEB10043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 629

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 109/640 (17%), Positives = 227/640 (35%), Gaps = 38/640 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK + +W     +  + V F++WG+    F  +    V  V   K+    +  ++
Sbjct: 1   MLDFMRKHASSWFVTGIIGAIVVVFVLWGIGS--FRSAQFQEVAEVDGAKIYLPEYYKAY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +  +    +++G   N E A+++ L ++ L  ++    + Q    +GL      +   I 
Sbjct: 59  QNLVRNYQEQMGGESNEEVAKTLRLREQALGQMIDELLIKQASNRLGLNVTDAELRDYIR 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           R+P F  +   F+   +   LAR  +   EY +   + L    +V       + S   L 
Sbjct: 119 RNPAFADERG-FNEKRYHQLLARRRLPASEYEEQERQQLLVQKMVHFITSFAKISEADLQ 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +A R   E   V+Y+VL             A + Q++E + + +R PE  ++ YI F  +
Sbjct: 178 EAYRLQQETVRVEYVVLGPSQFLKEQQAGAAEMQQYYESHPETFREPEKVKVRYIFFKFN 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAFQ 288
           + + +I+   ++++  Y  + E Y  P+   V QL      +            A++  Q
Sbjct: 238 DFDGQIKADREKIETYYYDHLEDYSRPQTIRVSQLFLEPPSKAGTAEQQRFRLLAEKLLQ 297

Query: 289 SLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             + G+ F QL ++             LG   +            F L K G    +   
Sbjct: 298 RARAGESFEQLQKKYSPEAEGRIQAGELGLVKRGQNI-PEWEAVAFHLKKGG--IGMAKT 354

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
             GY +  V++I    T    EV+  +    R  +A +      + L   +         
Sbjct: 355 PRGYYLIKVNDILERKTPPLAEVQAQVEKSWRAEEAKKLAHRQAEGLRAEMLN----ASF 410

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           +       I +    +         +   P   Q+   +     P      + L DG   
Sbjct: 411 AEAAAARHIKVQETGWLTSKDAIPGLGQQPAFSQMAIGL----KPQEISKPLNLADG-VA 465

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            +Q+ +   +    L ++   V +  +  K A   +++  + +L   ++G++   +    
Sbjct: 466 LLQVMDHQDSLLPPLAQIKDRVAEAVRLEK-ARLAAAEEAESILSRLQKGESLAKVAAQK 524

Query: 525 GASLLTTNQINRMDN-ENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSK 580
           G  L  +    R      +    +  +  FS    P   V           +VFK     
Sbjct: 525 GVPLKDSGFFTRSQGMPGQGQVRELATAAFSLAATPPHHVDLVSWGGENYLLVFKERRQP 584

Query: 581 VGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                   +++    L  +  + +    +A  + +  + V
Sbjct: 585 SREQFALAREELSKGLMDLKRQMVFSQWLASERQRAKIKV 624


>gi|332971823|gb|EGK10770.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           1501(2011)]
          Length = 624

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 112/642 (17%), Positives = 240/642 (37%), Gaps = 34/642 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E IR   ++W  +IFL++   P +I GL       + ++ V +VG Q +  + + ++  
Sbjct: 1   MESIRNFLQSWPGRIFLMLCLSPLVILGLESYFTGSANANDVATVGDQTITRAEYQDAIN 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                + Q     V +    +  L++++L  L++ A L      +G+      +   + +
Sbjct: 61  TRRNELLQ---NGVEASAINTNALNREVLKGLINRALLRNQSGQLGMHVSDKVINDLLLQ 117

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P F  ++ +FS+D F   L ++G+ + +  D Y + L+   +              ++ 
Sbjct: 118 DPQFLDENGQFSNDRFAFSLQQQGMTKDQLFDQYRQQLNLMQLYAGVAQTAIYPESEIND 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R V    L           S   +  ++ ++K++  +     ++YI  D  +
Sbjct: 178 LLALQLETRDVWVYRLPWEQYKDKVSVSAKEIENYYNEHKNDLNSVAMVDLAYIQLDPAK 237

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKEADEAFQSLKKGKKFIQ 298
                +++  E+QA+Y+  K  Y     + + Q++      ++   +  + LK+G+ F  
Sbjct: 238 VAVD-KVTEKEIQAQYDAFKANYKGAANQKLSQILITGDKAEQTIQQIQKRLKQGESFAA 296

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLAD-----SIFSLAKKGDFTPVIHGSFGYVIAHV 353
           LA++  +     + G     + PDV  AD            K   +  +  SFGY +  V
Sbjct: 297 LAKQYSEDPISAAKGGDIGTFNPDVFGADGAKVAKAIEGLNKDQISAPVKTSFGYQLFKV 356

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + +      S   +++++  Q +  K  + + +   R+ E    G  +++I+++E++   
Sbjct: 357 TEMSGDSVPSLASMREELVAQAQRQKREQLIADKITRINEMAIDGVGIEDIAQQEELTVQ 416

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
            +      G     K     P      F  F   D           +   +WVQ     P
Sbjct: 417 KIKNYTKVG----NKTALGQPAVIDAAFDDFALQDESVSASIKV--NNGTIWVQPTNYRP 470

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
            +   L++   D+K      K  E+  + A  +    + +G       + + A+  +   
Sbjct: 471 VKPLTLQQASADIKNILVKQKATEQALAAARNISKTVNDKG------MQAVQANFKSLGN 524

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
           INR   +N     D  +  FS      K   +          +    +     KD   + 
Sbjct: 525 INR---KNPLLSTDEQAIAFSKDSTNGKQLAVSEKTKEGATVLVLGPISKGSMKDVPAAE 581

Query: 594 LTQMM-------NKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
           L+Q M        ++     + YLK    V  ++ +I     
Sbjct: 582 LSQAMFDMRSIRGQEYFSDYLEYLKGATKVEENEKVINEVGG 623


>gi|148653423|ref|YP_001280516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
 gi|148572507|gb|ABQ94566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
          Length = 624

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 107/637 (16%), Positives = 232/637 (36%), Gaps = 34/637 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E IR   ++W  +IFL++   P +I GL       S  + V  VG Q +  + + +   
Sbjct: 1   MESIRNFLQSWPGRIFLMLCLSPLVILGLESYFSGASSVNEVAKVGDQTISRAEYQDGLN 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                + Q     V +    +  L+ ++L  L++ A L    + +G+      +   + +
Sbjct: 61  GRRNELLQ---GGVEASAINTQALNSEVLKGLINRALLRNQTDHLGMHVSDAAINNLLLQ 117

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P +  ++ +FS+D F   L ++GI + +    Y + L+   +              +  
Sbjct: 118 DPQYLDENGQFSNDRFAFALQQQGITKDQLFAQYRQQLNLMQLYASVAQTAVYPESQIHD 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R V    L           S+  ++ ++ + K    +     ++Y+  D  +
Sbjct: 178 LLALQLETRDVWVYRLPWEQFKDKVSVSDKEISDYYNENKSKLNSRAMVDLAYVSLDPSK 237

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKEADEAFQSLKKGKKFIQ 298
              + +++  ELQA+Y+  K ++     + V Q++      +    +  Q LKKG+ F  
Sbjct: 238 LPVE-KVTQAELQAQYDDYKARFVGNSKQKVSQILVTGSKAEATMQQIEQRLKKGESFAA 296

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLAD-----SIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +A+E  +     + G     +  D   AD        S  +KG+ +  +  SFGY +  V
Sbjct: 297 IAKELSEDPVSAAKGGDIGTFNADAFGADGQKVAQALSGLEKGEVSAPVKTSFGYQLFKV 356

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           ++       S + ++ ++  Q +  K  + + +    + +    G  +++I+++E +   
Sbjct: 357 TDKSGDSVPSLESMRDELTAQAQRQKREQLIADKITSINDMATDGVGIEDIAQQEGLTVH 416

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
            +        + +       P   +  F  F   +           +   +WVQ     P
Sbjct: 417 KIKNYTKLNNNTE----LNQPVVIEAAFDDFALQE--ESVSPGIKVNTGTVWVQPTNYRP 470

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
            +   L +    +K      K A++  ++A +L    +  G +                 
Sbjct: 471 IKPLTLAQASAQIKSTLVKQKAAQQAMAQAKRLSETVNNSGMS------AAKVPFKALGT 524

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
           INR    N     D  +  FS      K   +    S     +    +     KD   + 
Sbjct: 525 INRQ---NPQLSMDEKAIAFSKTTPAGKQVAVAEKTSSGATVLVMGSISKASIKDVPAAE 581

Query: 594 LTQMM-------NKDLLDSVIAYLKSQYSVTVHDNLI 623
           L+Q M        ++     + YL+    +  ++ +I
Sbjct: 582 LSQAMFDMRSIRGQEHFSDYLEYLRGATKIEKNEAVI 618


>gi|307293346|ref|ZP_07573192.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium chlorophenolicum
           L-1]
 gi|306881412|gb|EFN12628.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium chlorophenolicum
           L-1]
          Length = 649

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 129/643 (20%), Positives = 248/643 (38%), Gaps = 18/643 (2%)

Query: 1   MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFS 54
           ML + R+  R+    + A IFL ++   F++  ++   F   +    TV   G  K+  +
Sbjct: 1   MLSVFRRFIRSKFGAFTALIFLAIIAAAFIMGDITSGKFGSSIGSGETVAKAGGSKLTMA 60

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            F +  ++      +    +   +     G   ++ D LV+  TL ++  D  +      
Sbjct: 61  EFQDRVQRVFENARRSNPGLQIGDFLAQGG-GAQVYDQLVASMTLKEYAGDQKVHISKRL 119

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V  +IA+ P F      FS + F   L RE I E+   D   + +    ++     G++ 
Sbjct: 120 VDAQIAQIPAFQDAAGNFSQENFRQLLLRERITEQALRDDIGREILERQMLAPLGLGVKL 179

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           S+ ++        E R     V+       IA+P++A L  +++K    Y  PE +RI Y
Sbjct: 180 SDSMVLPYASLLLEARQGTIAVIPASAFKDIAEPTDAQLGDFYKKNAARYTIPEQRRIRY 239

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
            + DV    +  + ++ E+   Y +NK  Y + E R  EQL+ P +  A      +K GK
Sbjct: 240 AVIDVERFAQAAQPTDAEIATYYNQNKAAYAARESRDFEQLILPTEAGAKAIADQVKGGK 299

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
                A++ G ++S++   S         +   +    AK+G+    + GS G+ +  V+
Sbjct: 300 SLAAAAQDAGLAVSELKDQSRQGLAATASAAIANAGFAAKQGELVGPLRGSLGWALLRVT 359

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
            +K +   +   VK +I   +R  K    + +   ++E+ +A G S +E+ +   +    
Sbjct: 360 AVKSTPARTLDAVKGEIVATLRTQKEKRLLNDFTGKIEDQVANGGSFEEVVKDNGLKLET 419

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
            P +  +GK V+          + LL  VF               D  Y      +   A
Sbjct: 420 TPFLISSGKQVEDAAYQLPADVQPLLAPVFAMSQDDDAQLIPIAADKRYALAAPGDIQAA 479

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
               L +V   V   +K  +  E+  + A Q+  + +K G    D     G +L     +
Sbjct: 480 APPPLAKVKALVAMQYKLAQGNEKAKALAEQIRAKVAK-GVKLDDAVAAAGIALPKPQVV 538

Query: 535 NRMDNE---NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
                +   +       I+ +F+     VK  P      Y V ++   K G        +
Sbjct: 539 GGRRADILRDGQRPPAEIAMLFAMAPNSVKTLPAGQDRGYFVVQLNGIKRGDAGSDKALL 598

Query: 592 SYLTQMM----NKDLLDSVIAYLKSQYSVTVHDNL---IQRYL 627
           + +   +     ++        ++ +  V  + N    +QR L
Sbjct: 599 NQVRDQLSDVVGQEYGQQFERAVEKELGVKRNPNAVAGVQRAL 641


>gi|93006476|ref|YP_580913.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           cryohalolentis K5]
 gi|92394154|gb|ABE75429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           cryohalolentis K5]
          Length = 624

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 107/640 (16%), Positives = 241/640 (37%), Gaps = 30/640 (4%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++ +R   ++W  +I L++   P  + G+          + +  VG   +  S +  +  
Sbjct: 1   MDKLRDFLKSWPGRILLILCLSPLALLGVESYFGGNVDPNQIAQVGEASIGLSEYQTAVN 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                +  +   V ++       L +++L  L+    L+Q    +G+      +   + +
Sbjct: 61  NRRTELLDQ---VDDASLLNEDVLHEQVLKGLIDRTLLEQQAGKLGMTVSDDTINRLLRQ 117

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
             +F G D +FS+D F S L +  + + +  D +   LS   +    VG        + Q
Sbjct: 118 EEIFKGADGEFSNDQFASFLRQRNMTKNQLFDEFRNQLSLDQLNASIVGTAAYPMKAVSQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++     N +   +    S   +  +++  KD  ++     ++Y+      
Sbjct: 178 LINLQLEARNIWLHRFNWQDYVSKVKLSKNDIQAYYDANKDTLKSAAMVDLAYLQLSPQT 237

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKEADEAFQSLKKGKKFIQ 298
            +   E++ ++LQ +YE  K+     + R + Q++      +  AD+    L KG+ F +
Sbjct: 238 IQVN-EVTKEDLQQQYEAYKQSLAVVDERKISQILLTGSDAKARADKIKARLAKGEAFAK 296

Query: 299 LAEEQGKSLSDISLGSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +A+ +    S  + G   +     +  D +  +        GD +  +  SFGY I  V+
Sbjct: 297 VAKAESDDPSGETGGDIGRFNPSVFGNDAAAVEKALEGLSVGDISVPVKTSFGYQIFTVT 356

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
               +   S + ++ D+  + +  K  E   +    + +  A G S+++I+++E +    
Sbjct: 357 EDNGNKIPSLESMRDDLIAKAKEYKRQEIYADKVTAINDLAADGFSIEDIAQQENVSLKR 416

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-SYMWVQIKESIP 473
           L       KD + +   ++  +  ++ + F +     +  T  +  G   +WVQ     P
Sbjct: 417 L-------KDYRKENNKSVLAQPAVIKQAFDEFTIQDQAVTAGIEVGNGTVWVQPSNYRP 469

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
            +   L      + +  +  K +E   + A +L        K   DI K  G +     +
Sbjct: 470 TKTLSLTAATPRITQLLRQQKASELALNDAKKLAAGI----KTTADINKQ-GVTFQALGE 524

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF-----KVTNSKVGPVQEKD 588
           INR   +       G++     P   V     +  +   V      K          ++ 
Sbjct: 525 INRQTTQLTEKER-GLAFSKQAPENGVVAVASKTEMGATVLVGDRIKTEQQSPLSAAQRA 583

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
           +  + +   + +D L   + YL+  Y V ++   ++    
Sbjct: 584 QTAAIIRDNLGQDQLQDYLDYLRLVYKVEINKANMENAQG 623


>gi|329889376|ref|ZP_08267719.1| rotamase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328844677|gb|EGF94241.1| rotamase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 643

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 114/635 (17%), Positives = 244/635 (38%), Gaps = 14/635 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+   R  +++  A     ++ + FLI G    +F+  G   ++S G + V  + F   +
Sbjct: 1   MITYFRNFAKSKWAAGLFALIILSFLIVGAQSDIFANLGPRHIISAGDRSVDSNQFRGDF 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++    + ++ G  V+ +      L ++ LD+         +    G+      V  EI 
Sbjct: 61  ERVRANLQEQAGRPVSYDDMVKENLHQQYLDSQTQRLGFLDWAYKAGIRPGKELVLAEIR 120

Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
           + P F  +   +F  D++   LA++ +  +            + V      G++   +  
Sbjct: 121 KIPAFFNQITGQFDKDLYAQALAQQNLTSEMLEQDLRDQYVTSHVGSAVFAGLQAPRVYA 180

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                   E R   +  +          P++A LT + ++ +   R+PE++ IS +LF  
Sbjct: 181 ALLAGQALETRDGRWFSVTQDMAGRAGAPTDAQLTAFMKENEARLRSPEFRMISLVLFTP 240

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
              + +  ++ +++Q  YE  K     PE RT   L  P ++ AD+    L+ GK   ++
Sbjct: 241 GPNDPRPTVTEEQIQERYEFRKAALADPEKRTFVTLTVPTKEAADKIAADLRAGKAPAEV 300

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           A+     L D    +  +  + D ++  ++F LA     +  I G  G+ +A ++ I+  
Sbjct: 301 AKANNIQLGDYK--ATPQAAVGDPAVGAAVFGLA-VDQVSAPIQGRLGFTVAKLAAIQAG 357

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
             V+ +  +  +  +++            ++ E+    G ++ + +   K   I LP   
Sbjct: 358 QAVTLESARPALTQELQAEAVKAATYAKVEQFEKARQEGKNLADAATAAKARVIQLPPFT 417

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
             G+   G+ + A     Q+L   +        D  +   DG Y  V++ +  P+    L
Sbjct: 418 QQGQLPDGQPMNAP---RQVLESAYTLTKGGESD-VIDAGDGQYFAVRLDDIRPSALPTL 473

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           +EV   + + W   + A  +S+KA QL     + G++   +    GA L     + +   
Sbjct: 474 DEVRAPLGQQWTLRENARLLSAKAEQLAGR-VRAGEDIAKVAAEAGAPLTVRTGVQQSRE 532

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
                G   +  +F      V     ++  ++VV +V                     + 
Sbjct: 533 SQAQVGDGVLRGLFGQSKGQVFS-DAQSQTAFVVGRVDAIHAANPALAAPLAEQARPRLT 591

Query: 600 KDLLDSV----IAYLKSQYSVTVHDNLIQRYLDGE 630
           ++L +++    IA   ++        L  + L  E
Sbjct: 592 EELANTLADRTIAAAAARTKSRNDPALALQALGVE 626


>gi|319638362|ref|ZP_07993124.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102]
 gi|317400111|gb|EFV80770.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102]
          Length = 617

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 119/636 (18%), Positives = 237/636 (37%), Gaps = 55/636 (8%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A+I L ++ + F+ +G ++   S  GS  +V VG +KV   +   + + E     Q  G 
Sbjct: 12  AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAGN 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
              S           +  +L+  A L Q  + +G+     ++   I   P FH    KFS
Sbjct: 65  NAPS--------RDAVFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D+    L +  + E ++++   +     +++ +   G   S+    Q        R++ 
Sbjct: 117 QDLLKKYLDQRRMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               +     A     +A L +++E +K +Y  P+  ++ Y+   + +  +K  +S +E+
Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALSIKDLAEKQTVSAEEV 236

Query: 254 QAEYE-KNKEKYFSPEIRTVEQLVFPNQKEA---------DEAFQSLKKGKK-FIQLAEE 302
           Q  Y+ K+ +     EI  +   V PN  EA         D+    LK     F +LA +
Sbjct: 237 QKAYDSKSVDLSPRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDSFAELAAK 296

Query: 303 QGKSLS----DISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             K LS      +LG  SK            + F+L K G+ +  +  S GY +  V N+
Sbjct: 297 YSKDLSSSNKGGNLGYLSKSGGSGFGPEFDKAAFALGK-GEVSDTVKSSLGYHVIKVLNV 355

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVSIDL 415
           +     + ++ K  I   +++ KA+       ++L E+     +S+ +      +    L
Sbjct: 356 EAE--PTLEQAKARIEAALKLKKAASAFNAAKEKLGEDTFNDPSSLAKAVANSGLKVESL 413

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--DHTVALPDGSYMWVQIKESIP 473
                      G + A +P  E L+   F  D    K     +A+ + +   ++ KE   
Sbjct: 414 DE----WVTKAGAKEAGLP--EALINAAFSDDVLKKKHNSEVIAINNDTVWVIRAKEVRE 467

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
            +     EV   V+  +   +  +    KA + +             GK         +Q
Sbjct: 468 EKIAPFAEVKDTVRAAYLRSEAVKLAEKKAQETLAAL--------KAGKTADVQWSPVSQ 519

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF--- 590
           ++  D           + + + PV     + +  G+   V     S   P     +    
Sbjct: 520 LSAQDARKTMSPEAYAALLKARPVGGKPAYTLLEGMPAPVIMEVQSVSAPENADSQIPAS 579

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
              L Q ++ ++ D+++ YL  +   T     +   
Sbjct: 580 KQALVQQLSANVFDALLQYLDKKIDRTQGAQQVNNA 615


>gi|262278967|ref|ZP_06056752.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259318|gb|EEY78051.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 621

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 105/631 (16%), Positives = 219/631 (34%), Gaps = 25/631 (3%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ L++   P  + G+       + +    +V  Q++         +
Sbjct: 1   MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                    +    +        +  K LD LVS   L Q  E +G+     ++   +A+
Sbjct: 61  SYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDTQIEQMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P    ++ +FS  ++ + L   G+  +  I    +  +   +   F      S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSQGLISSLRQDHALKMLTSTFSDYSLVSKVDLMQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +           SN   T ++ K+++ ++      + Y++     
Sbjct: 178 IANLQTEQRTLHLASIKLDGYKTGLTASNQEATDYYNKHQNEFKQQASVDVDYVVVSPSL 237

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKKG 293
             K    +  ELQ  Y K  E       RTV+ ++           QK A E +  ++ G
Sbjct: 238 MAKPAPATEAELQQAYSKFVETQKKDAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGG 297

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F Q A +  +  S  + G   + Y P V   +   ++ SL K G  +  +   +GY I
Sbjct: 298 LTFAQAASQFSEDPSSKAKGGLVEAYAPGVFSDAFDKTVVSL-KNGQISQPVKTQYGYHI 356

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
              +  + +   SF+  K  +  ++   K +    +    L E +    S++ + +  K 
Sbjct: 357 IE-AETQANQIPSFEAEKARLTAEVEKNKVATVYSDTVNSLNETIVGNDSLEAVVQEVKG 415

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             ++                 + P  +  LF    K+   +    + L +G  +W+++++
Sbjct: 416 TKVE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWIKVRD 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
              A  + L + + + K      K  + V +K   ++ E+  +      +         +
Sbjct: 473 YHAAGVKPLAQAMNEAKAKVIDEKARKAVQAKIATMLAEFKTQ--PADQVVAKNKVVFES 530

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-EMVKCFPIENGLSYVVFKVTNSKVG---PVQE 586
               +R     +       S     P    V    + N L  V     NS      P  +
Sbjct: 531 AGVFSRSQGLKREIERAAFSAATPKPGMWSVSTANLPNELVVVAVSNVNSSAVNAIPADQ 590

Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             +      Q   + +L+    YLKS   + 
Sbjct: 591 LQQLQQLYRQSRGQQILEDYSQYLKSHAKIK 621


>gi|322652369|gb|EFY48724.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
          Length = 481

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 91/494 (18%), Positives = 205/494 (41%), Gaps = 23/494 (4%)

Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
            + G+   +Y       L+   ++    G         D+      + R V   V++   
Sbjct: 1   NQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNA 60

Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
           + A    ++  ++ ++++ K  +  PE  R+SYI  D      +  +S+ ++QA Y+++ 
Sbjct: 61  LAAKQQVTDQEVSSYYDQNKARFMTPEQFRVSYIKLDAATM--QAPVSDADIQAYYDQHV 118

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSK 317
           +++  PE      +    + +A     +L KG+ F  LA+E+   +    +   +G   +
Sbjct: 119 DQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEE 178

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
                  L ++   L +KG  + VI  S G+++A + +I+P+      EV+ DIA +++ 
Sbjct: 179 SATV-PELKNA--GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQ 235

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
            KA +      +++ +  A     + ++  E++  +      +  +D   +E+   P  +
Sbjct: 236 EKALDAYYALQQKVSD--AASNDNESLAGAEQVAGVKAVETGWFSRDTLPEEMNFKPVAD 293

Query: 438 QLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
            +    + G++     +  +   DG     V++ E  P   + L EV   V    K  K 
Sbjct: 294 AIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKA 353

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
            ++    A +L++E  K GK    + K  G S      ++R   +         +   S 
Sbjct: 354 EQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQD----PVSQAAFALSL 407

Query: 556 PVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
           P +    + + N +  + V+      K G  P  +K   +  +TQ   + + +++++ L+
Sbjct: 408 PTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEVQKKAMVQGITQNNAQIVFEALMSNLR 467

Query: 612 SQYSVTVHDNLIQR 625
            +  + + D L Q+
Sbjct: 468 KEAKIKIGDALEQQ 481


>gi|119384865|ref|YP_915921.1| putative peptidyl-prolyl cis-trans isomerse [Paracoccus
           denitrificans PD1222]
 gi|119374632|gb|ABL70225.1| putative peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
          Length = 652

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 126/629 (20%), Positives = 247/629 (39%), Gaps = 54/629 (8%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
             G++ + SVG  ++    +  + + E+   S + G  +++  A+++G+D+  L  L + 
Sbjct: 30  SGGTADIGSVGGVEISAQDYARTLRAEMQEFSARTGRQISAAEAKTIGVDQAALARLYTA 89

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
           A L+     +G+      V G+I     F G + +F   ++   L REG+ E E+     
Sbjct: 90  AALEAEANRLGVSVGDQAVAGQITGIAAFRGLNGQFDRAIYADALRREGMREAEFEHDLR 149

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQ 215
             ++R  +    + G+     ++ Q + +  E R + +  L    +P  +A P    L  
Sbjct: 150 MDMARLILQDAALAGVSAPQPVVAQTQGWLLETRDIHWRELTAEDLPTPVATPDETTLQA 209

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           W +   D + APE ++I+Y+       E ++E+    L+  Y+   E++  PE R VE+L
Sbjct: 210 WHKANADRFTAPEIRQITYVWLTPEMLEGEVEVDEQALRDLYQDRIEEFQQPERRMVERL 269

Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           VFP    A+EA   +  G+  F QLA E+G SL+DI LG  ++  +   S  +++F+L +
Sbjct: 270 VFPTMAAAEEAKARIDSGEVTFEQLAAERGLSLADIDLGEVARADLG--SAGEAVFALEE 327

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G          G  +  ++ I     + F++ + D+  +  + +A  +++E      + 
Sbjct: 328 PG-VAGPASSDLGPALFSMNAILEPLDIPFEQARDDLRLEAAVDRARRQIEERAGEFADL 386

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           LA G +++++++   +    +     A  D  G  + A P   +   ++  KD P     
Sbjct: 387 LAGGAALEDMAQDTPMKLGRIDWSQGAEADPNG--IDAYPEFRERAAQLTEKDFP----E 440

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK-------------------- 494
                DG    +++ +  P      E+V   V +DW   +                    
Sbjct: 441 LFETEDGGVFAMRLDKIEPPALIPFEDVRDRVAEDWSRNEGHRLLLALAEELRVQAEAAA 500

Query: 495 -----------TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
                      TA    +         +  G N     +           ++R    N  
Sbjct: 501 EPEIEPAPAAATAPASQALGAAATGAANATGGNAPATARPAPDLGTPATNLHRGGFINGV 560

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE--------KDKFISYLT 595
              D + Q F    E              VF +T  K+ P           +D   + L 
Sbjct: 561 -PQDVVVQAFEIAEEGATEVVDAENR---VFLITLDKIHPADTAGDEAAQIRDGISARLA 616

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
             + +D+ D     L+ Q  VT++   + 
Sbjct: 617 DSLRQDVFDYFARALQVQGGVTLNQTAVD 645


>gi|95930881|ref|ZP_01313612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133123|gb|EAT14791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 664

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 105/660 (15%), Positives = 240/660 (36%), Gaps = 44/660 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML++IRK  +T V K+   V+   F+     +WG           +    V    + F  
Sbjct: 19  MLDLIRKKQKTTVVKVVFWVIIATFIGTIFLVWGKGRDQQRDI--TVAAQVNGTDISFEQ 76

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F  ++     +     G     E  + + L ++ ++ L+  A L +  E + +      +
Sbjct: 77  FRTTYSNMYNLYHNLYGQNFTPELEKQLQLTRQSINLLIDQALLLEEAERMHVSISDDEL 136

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              IA  P F   D  F+ + ++S L+ + +  + +     + +               +
Sbjct: 137 VKAIAEVPAFQ-VDGVFNKEQYISVLSYQRMTPELFEQMQKQQMLVNLTQAQIRSEAVVT 195

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +  +    R   EN ++ Y+           D ++  LT ++E  ++ +R  +   +S +
Sbjct: 196 DEDVADEYRRLNENVNLSYVAFKTGAFTDAVDVTDDALTAYYEANQEAFRVAQQVNLSLV 255

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS------ 289
                +   ++ +   ++Q  Y+++   Y  PE      ++ P  ++AD+A +       
Sbjct: 256 TLSPADYLDQVVLEEGDIQRYYDRHLATYAIPEQMAAAHILIPVAQDADDAQREKQRVLA 315

Query: 290 ---LKKGK--KFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
              L+K +   F +LA++             LG F +  + D +   + F+L K    +P
Sbjct: 316 EQVLEKAQTGDFAKLAKQYSADTATAQKGGDLGLFQRG-VMDPAFEAAAFALQKD-ALSP 373

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
           ++   FGY I        +      +V+ ++   +R+ +A +   E            ++
Sbjct: 374 IVETRFGYHIIKGGEHIEAGFTPLADVRDEVEKALRLDEARKLAYEKAMDAYNLNRKESN 433

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
               +       ++       G   + + +  +    +L  R FG               
Sbjct: 434 FSAAAESLGATPVE------TGLFSQMQAIPTVGVSSELTERAFGAAAGEMLAPVNTTR- 486

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
              +   + E+I +   +L  V  +V + +K  +    ++ +A Q  LE  ++G   + I
Sbjct: 487 -GVVLATVTENIASHIPELSAVKAEVTEAYKRQQAV-VLAEEAAQKALEKIQQGAKLKSI 544

Query: 521 GKNLGASLLTTNQINRMDNE--NKFFGYDGIS-QVFSGPVEM-VKCFPIENGLSYVVFKV 576
             N G  +  T   NR   E         G++   F+  ++  V       G ++ + ++
Sbjct: 545 ADN-GRKVQETGLFNRALGEFVPTLGNVPGLAEAAFNLTIKEPVASQLYSAGENFYIVRL 603

Query: 577 TNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
              +         +E  +    +      +LL S +  LK    V +   +++   +G +
Sbjct: 604 KQLQPADPNGLTEEESQRLQQTVLSRKQDELLRSKLDELKQTAEVIIAPAILRSMEEGNE 663


>gi|327398937|ref|YP_004339806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hippea maritima DSM
           10411]
 gi|327181566|gb|AEA33747.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hippea maritima DSM
           10411]
          Length = 631

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 124/657 (18%), Positives = 266/657 (40%), Gaps = 61/657 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD-------ALFSVS----GSSTVVSVGRQ 49
           ML+ +R   + +             ++W  +         LF       GS+T + VG  
Sbjct: 1   MLDFLRNNIKRFAI-----------VLWIAAAAFIIGGAYLFVRGPFTMGSNTAIEVGNT 49

Query: 50  KVPFSSFINSWKQELGMISQKI----GFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           K+ F  +  ++        Q +    G   + +  + + + +K +D LV  A L Q  + 
Sbjct: 50  KISFQDYQKTYNNIYNFYVQMLTQLKGGNFSDDDLKKLNIKQKAIDILVERALLLQQAKK 109

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
            G++  +  V   I  +  F+  + KFS + +++ L    IN K+Y D     L    + 
Sbjct: 110 EGIKVSNEDVLRAIESNKAFYY-NGKFSKEKYLALLKANNINPKDYEDSLKTALYIDKLK 168

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
                 ++ S+  +       +   ++D++  +     +     +  L ++++K+K +YR
Sbjct: 169 KRLFKDVKVSDKDVKSFFDKNYSKINLDFVSFDISSFKSKVKVDDEKLNKFYQKHKSDYR 228

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ----- 280
            P   +  YI+  +   +KKI+++++E +A Y  +K+ +  P    V  ++  ++     
Sbjct: 229 IPTMVKFEYIVVPLSYVKKKIKVTDNETEAFYNAHKDYFKVPLRIKVAHILISSKDNQTD 288

Query: 281 ----KEADEAFQSLKKGK-KFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFS 331
               K+AD+ ++ L+  K  F + A++             LG  +K+ + D    ++I  
Sbjct: 289 SKLRKKADDVYKLLEDKKISFKEAAKKYSSDDYTRNVGGELGYVTKDMVID-EFWNNIIK 347

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           L K+G+ +      FGY IA V +IK  F   F+ VK  I + ++  KA +    +  ++
Sbjct: 348 L-KRGEISKPFKTKFGYHIALVEDIKKPFVRPFKSVKDQIKDYLKTNKAKKVWFVEADKI 406

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
             F+ +  S + + +  K   +     D+           A   +  LL        P  
Sbjct: 407 --FVKIRDSKESMKKAAKEFGLPFKETDYMSLKNPQTPFTAKMVQNALLSNKGALLGP-- 462

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
                 L    Y+  ++ +  P+     ++V   +KKD+   +  +   ++A+ + L+  
Sbjct: 463 -----DLSSAGYVIYKLTDKKPSYIPPFDKVKDKIKKDYIEKQAIKLALAQADNI-LKQI 516

Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKF---FGYDGISQVFSGPVEMVKCFPIENG 568
           K  K+ +D+       + T   ++++   +KF      D +S++F            + G
Sbjct: 517 KASKSLKDVALAFKLKVETVKNLSKLMPTDKFPCSLKEDIMSRIF--QKGKGYADKCQQG 574

Query: 569 LSYVVFKVTNSKVGPVQ---EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
               VF+VT+      +    K+   + L      ++L+  I  LK Q  + ++  L
Sbjct: 575 KKIYVFEVTDKIFDEKEFNKLKESIRNELISEKENEILEKFIDKLKKQTKIKINPKL 631


>gi|270156946|ref|ZP_06185603.1| peptidyl prolyl cis-trans isomerase D-like protein [Legionella
           longbeachae D-4968]
 gi|289164629|ref|YP_003454767.1| peptidyl-prolyl cis-trans isomerase D [Legionella longbeachae
           NSW150]
 gi|269988971|gb|EEZ95225.1| peptidyl prolyl cis-trans isomerase D-like protein [Legionella
           longbeachae D-4968]
 gi|288857802|emb|CBJ11647.1| putative peptidyl-prolyl cis-trans isomerase D [Legionella
           longbeachae NSW150]
          Length = 624

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 108/638 (16%), Positives = 232/638 (36%), Gaps = 39/638 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+   L S   ++  V V    +   +F  S+
Sbjct: 1   MLQKLNERIQGVVAWLVVILIGITFTLFGVDYYLQSRQTTNAKVVVNDFPLTLQAFDTSY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++   M   +    + +  A    L  ++LD +++   L Q     G      +    I 
Sbjct: 61  RRARAM---QDLSQLTA--ADEKKLQNQVLDQMINNEVLVQAARKNGFNVSADQANAAIL 115

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  +D  FS   +   L      +  + +   + +        F+G        +D
Sbjct: 116 SIPQFQ-EDGHFSAQKYQQALNAALFTQSSFQNEVKQGMLLNQQRFAFMGSSFALPDEID 174

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +    Y ++R  +Y+++           S   +T ++ K+K  + APE   + Y+   +H
Sbjct: 175 RFVSLYMQSRDYEYLIVPVSRFEKDVQISQDAITDYYNKHKREFMAPEKVSLDYVNLSMH 234

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL---------- 290
           + + K+ +S+D+++  YE+N+  Y +P    V  ++F   + A++               
Sbjct: 235 DIKDKVNVSDDDVKRYYEENQNNYLTPARWHVAHILFAVPQGANKDELEKIQNKANSTYL 294

Query: 291 ---KKGKKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
              K  K+F  L  +     LS    G            +  +  L   G  +       
Sbjct: 295 LLQKDPKQFDHLVSKMSDDKLSVADNGVLPWIAAGQNEYSKLLSHLTTPGQISSPEKTKH 354

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEIS 405
           GY I  + + KP  T    EV+  I  Q+ +  A  +  +  ++L +       S+  ++
Sbjct: 355 GYEIFKLIDYKPVSTKPLSEVEASIKEQLVVEMAQTQYTQAMEQLSDLSYQSPDSLQPVA 414

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463
               +  +        G         +I   +Q++   F  D  D  +    + + + S 
Sbjct: 415 DALNLKIVKTQPFSREG------GAESIAKNKQVINSAFSHDVLDLGNNSDPIQIDNDSV 468

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           + V++    P +++ L+ V   + K     +   +       L+     E K  +D+  +
Sbjct: 469 VVVRVNRHWPEKEQTLDAVHDRIHKILVKKEAETKAKKIGMSLLN--PGEEKQQKDLIVS 526

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
                 +  +  R +++      D    +     E    F + NG  + V K+ +   G 
Sbjct: 527 NQLEWKSVVKATRDNDKEDVEINDMAFNLLR--PESKDGFVLPNGD-FAVVKLKHINNGK 583

Query: 584 VQEKD-KFISYLTQMMNKD----LLDSVIAYLKSQYSV 616
             E D +    LTQ +         D     L S   +
Sbjct: 584 FSELDGETQDSLTQQIEASYGMMDYDLYAKNLMSHSKI 621


>gi|296283875|ref|ZP_06861873.1| peptidyl-prolyl isomerase [Citromicrobium bathyomarinum JL354]
          Length = 646

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 119/640 (18%), Positives = 262/640 (40%), Gaps = 22/640 (3%)

Query: 1   MLEIIRKASRTWVAKI----FLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFS 54
           M+   R   ++ +       FLV++ + F     G S +   +SG+++V  VG + V  +
Sbjct: 1   MINFFRSFFQSKIGLGLTIGFLVLIAIAFAAGDVGNSGSFGGLSGTNSVAVVGDEDVTTA 60

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
               S       + Q    +  +E     GL  ++LD L+    + +F + +G+ A    
Sbjct: 61  ELRQSADNAFRQVQQDEPTLSMAEFVEDGGL-MQVLDTLLDRVAVSEFGKMLGVRAGENL 119

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +  EI     F G D  FS + + + L ++G+ ++   D  +  L    V+   V G + 
Sbjct: 120 INSEIRMISAFRGPDGSFSTEAYRAALQQQGLTDQIVRDDLSDGLIAQQVLVPAVFGAKF 179

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + ++ +      E R     ++         DP++  L  ++   + ++  PE +++ Y
Sbjct: 180 PDSIVARYATQLREKREGSIALVPAELFAPKDDPTDKQLQTFYNANRTDFMRPERRQVRY 239

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
            LF   +    +E +  E++  Y+ N + Y + E RT  QL+ P ++ A+   + +  G 
Sbjct: 240 ALFGADQLADSVEPTAAEIKKRYDDNADLYRASEDRTFTQLIVPTRQAAESFRERVADGA 299

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
              Q+AEE G     I  G   +E      + ++A+++FS A +G+  P+     GY + 
Sbjct: 300 SLTQIAEEAGLETQQI--GPIKREDYAQQANAAVAEAVFS-ADRGEIAPIARSPLGYHVV 356

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            + ++K     +  + + +IA+ +R  K    + E    ++  +  G S  +I+    + 
Sbjct: 357 RIDDVKTIPARTLAQARDEIADALRADKQRRALTELASDIDARVTSGESFADIAEALDLD 416

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                 +   G+   G++    P   Q L+  VF   +   +   V   + ++   +  E
Sbjct: 417 IQTTRPLLADGQVYGGQQGETAPEVVQPLIQTVFQMREGQPQIAEVETGE-TFALYEASE 475

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             PA    L+E+   V   W   + A+   + ++++ L+  K+GK+  +  +     L  
Sbjct: 476 ISPAAVPPLKEIRDAVTARWTMAEGAKAAKAASDRI-LKRVKDGKSLAEAIRAEETRLPP 534

Query: 531 TNQ--INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
                + R            IS +F+      K         + + ++     G V + D
Sbjct: 535 PQPLSLTREQMMQMQRPNPPISLMFAMSAGTAKRLEAPRNAGFFLVQLDEITAGKVAKDD 594

Query: 589 KFI----SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
             +        Q+++++  D +   ++++  +  + + I+
Sbjct: 595 PLMGEARRGYGQLLSREYGDQLRNAIRTEVGIERNADAIE 634


>gi|261380152|ref|ZP_05984725.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria subflava
           NJ9703]
 gi|284796990|gb|EFC52337.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria subflava
           NJ9703]
          Length = 617

 Score =  316 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 116/638 (18%), Positives = 239/638 (37%), Gaps = 59/638 (9%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A+I L ++ + F+ +G ++   S  GS  +V VG +KV   +   + + E     Q  G 
Sbjct: 12  AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAGN 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
              S           +  +L+  A L Q  + +G+     ++   I   P FH    KFS
Sbjct: 65  NAPS--------RDAVFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D+    L +  + E ++++   +     +++ +   G   S+    Q        R++ 
Sbjct: 117 QDLLKKYLDQRRMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               +     A     +A L +++E +K +Y  P+  ++ Y+  ++ +   K  +S +E+
Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALNIKDLADKQTVSAEEV 236

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQSLKKGKK-FIQLA 300
           Q  Y+  K    SP    +  +  P             + E D+    LK+    F +LA
Sbjct: 237 QKAYDS-KSVDLSP-RAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKEHPDSFAELA 294

Query: 301 EEQGKSLS----DISLGSFSKEYIP--DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            +  K LS      +LG  SK            + F+L K G+ +  +  S GY +  V 
Sbjct: 295 AKYSKDLSSSNKGGNLGYLSKGGGSGFGPEFDKAAFALGK-GEVSDTVKSSLGYHVIKVL 353

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVSI 413
           N++     + ++ K  I   +++ KA+       ++L E+     +S+ + +    +   
Sbjct: 354 NVEAE--PTLEQAKARIEAALKLKKAASAFNAAKEKLGEDAFNDPSSLAKAAANSGLKVE 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--DHTVALPDGSYMWVQIKES 471
           +L           G + A +P  E L+   F  D    K     +A+ + +   ++ KE 
Sbjct: 412 NLDE----WVTRAGAKEAGLP--ETLINAAFSDDVLKKKHNSEVIAINNETVWVIRAKEV 465

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
              +     EV  +V+  ++  + A+    KA + +              K         
Sbjct: 466 REEKIAPFAEVKDNVRAAYQRSEAAKLAEKKAQETLAALKAG--------KAADVQWSPV 517

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF- 590
           +Q++  D           + + + PV     + +  G+   V     S   P     +  
Sbjct: 518 SQLSAQDARKTMSPEAYAALLKARPVGGKPAYTLLEGMPAPVIMEVQSVSAPENADSQIP 577

Query: 591 --ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                L Q ++ ++ D+++ YL  +   T     +   
Sbjct: 578 AAKQALVQQLSANVFDALLQYLDKKIDRTQGAQQVNNA 615


>gi|322508302|gb|ADX03756.1| ppiD [Acinetobacter baumannii 1656-2]
          Length = 601

 Score =  316 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 103/615 (16%), Positives = 212/615 (34%), Gaps = 33/615 (5%)

Query: 22  FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
             P  + G+       + +    +V  Q +         ++        +    +     
Sbjct: 1   MTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQRYKEQYLAAVKG--DESLLN 58

Query: 82  SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
              +  K LD LVS   L Q  E +G+   + ++   +A+ P    ++ +FS  ++ + L
Sbjct: 59  LPVIQAKALDILVSRNLLIQQAEKLGISLSNAQIEQMLAQQPSLQ-ENGQFSQKLYENYL 117

Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
              G+  +  I    +  +   +   F      S + L Q      E R++    +    
Sbjct: 118 RSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQIANLQTEQRTLHLASIKLDP 177

Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
             A    S+   T ++ K+++ ++ P    + Y++       K    ++ EL+  Y K  
Sbjct: 178 YKAGLTASDQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAKFV 237

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------GKKFIQLAEEQGKSLSDISLG 313
           E       R V+ ++       D A Q L K        G  F Q A +  +  +  + G
Sbjct: 238 ETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKG 297

Query: 314 SFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
              + Y P V   +   ++ SL K G  +  +   +GY I   +  + +   SF+  K  
Sbjct: 298 GLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHIIE-AETQANQIPSFEAEKPR 355

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           +  ++   K +    +    L E +    S+D + ++ K   I+                
Sbjct: 356 LIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKGTKIE---SLNGVTLATQNPY 412

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
            + P  +  LF    K+   +    + L +G  +WV++++   A  + L + + +VK   
Sbjct: 413 LSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEVKAKV 472

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
              K  +   +K   ++ E+  +      +      +  +     R    ++        
Sbjct: 473 IDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFESAGVFTR----SQGLKRAIER 526

Query: 551 QVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQMMNKDL 602
             FS P        V    + N L  V     NS      P  +  +      Q   + +
Sbjct: 527 AAFSVPAPKPGMWSVTIANLPNELVVVAVSNVNSAAVNAMPADQLQQLKQLYRQSRGQQI 586

Query: 603 LDSVIAYLKSQYSVT 617
           L+    YLKS   + 
Sbjct: 587 LEDYSEYLKSHAKIK 601


>gi|71066028|ref|YP_264755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           arcticus 273-4]
 gi|71039013|gb|AAZ19321.1| possible PpiC-type peptidyl-prolyl cis-trans isomerase
           [Psychrobacter arcticus 273-4]
          Length = 624

 Score =  316 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 106/640 (16%), Positives = 241/640 (37%), Gaps = 30/640 (4%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++ +R   ++W  +I L++   P  + G+          + +  VG   +  S +  +  
Sbjct: 1   MDKLRDFLKSWPGRILLILCLSPLALLGVESYFGGNVDPNQIAQVGEASIGLSEYQTAVN 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                +  +   V ++       L +++L  L+    L+Q    +G+      +   + +
Sbjct: 61  NRRTELLDQ---VDDASLLNEDVLHEQVLKGLIDRTLLEQQAGKLGMTVSDDTINRLLRQ 117

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
             +F G+D +FS+D F S L +  + + +    +   LS   +    VG        + Q
Sbjct: 118 EEIFKGEDGEFSNDQFASFLRQRNMTKNQLFAEFRNQLSLDQLNASIVGTAAYPMKAVSQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E+R++     N +   +    + + +  +++  KD  ++     ++Y+      
Sbjct: 178 LIDLQLESRNIWLHRFNWQDYVSQVKLNKSDIQAYYDANKDTLKSAAMVDLAYLQLSPQT 237

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKEADEAFQSLKKGKKFIQ 298
            +   E++ ++LQ +YE  K+     + R + Q++      +  AD+    L KG+ F +
Sbjct: 238 IQVN-EVTKEDLQQQYEAYKQSLAVVDERKISQILLTGSDAKARADKVKARLAKGEVFTK 296

Query: 299 LAEEQGKSLSDISLGSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+ +    S  + G   +     +  D +  +        GD +  +  SFGY I  V+
Sbjct: 297 LAKTESDDPSGEAGGDIGRFNPSVFGNDAAAVEKALEGLSVGDVSVPVKTSFGYQIFTVT 356

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
               S   S + ++ D+  + +  K  E   +    + +  A G S+++I+++E +    
Sbjct: 357 EDSGSKIPSLESMRDDLTAKAKEYKRQEVYADKVTAINDLAADGFSIEDIAQQENVALKR 416

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-SYMWVQIKESIP 473
           L       KD + +   ++  +  ++ + F +     +  T  +  G   +WVQ     P
Sbjct: 417 L-------KDYRKENNKSVLAQPAVIKQAFDEFTIQDQAVTAGIEVGNGTVWVQPSNYRP 469

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
            +   L      V +  +  K +      A +L        K   DI K    +     +
Sbjct: 470 TKTLSLSAATPSVTQLLRQQKASALALKDAKKLAAGI----KTIADISKQ-SVTFQALGK 524

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF-----KVTNSKVGPVQEKD 588
           I+R   +       G++     P + V     E  +   V      K          ++ 
Sbjct: 525 ISRQTTQLTEKER-GLAFSKQAPEKGVVAVASETEMGATVLVGDRIKTEQQSPLSAAQRA 583

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
           +  + +   + +D L   + YL+  Y V ++   ++    
Sbjct: 584 QTAAIIRDNLGQDQLQDYLDYLRMVYKVEINKANMENAQG 623


>gi|325122070|gb|ADY81593.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 582

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 97/593 (16%), Positives = 206/593 (34%), Gaps = 28/593 (4%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  R   + W+ K+ L++   P  + G+       + +    +V  Q++         +
Sbjct: 1   MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                    +    +        +  K LD LVS   L Q  E +G+     ++   +A+
Sbjct: 61  SYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P    ++ +FS  ++ + L   G+  +  I    +  +   +   F      S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R++    +           SN   T ++ K+++ ++      + Y++     
Sbjct: 178 IANLQTEQRTLHLASIKLDAYKTGLTASNQEATDYYNKHQNEFKQQASVDVDYVVLSPSM 237

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKKG 293
             K    +  ELQ  Y K  E       RTV+ ++           QK A E +  ++ G
Sbjct: 238 MAKPAPATEAELQQAYAKFVETQKKDAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGG 297

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F Q A +  +  S  + G   + Y P V   +   ++ SL K G  +  +   +GY I
Sbjct: 298 LSFAQAASQFSEDPSSKAKGGLVEAYAPGVFSDAFDKTVLSL-KNGQVSQPVKTQYGYHI 356

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
              +  + +   SF+  K  +  ++   K +    +    L E +    S++ + +  K 
Sbjct: 357 IE-AETQANQIPSFEAEKARLTAEVEKNKVATVYSDAVNSLNETIVGNDSLEAVVQEVKG 415

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             ++                 + P  +  LF    K+   +    + L +G  +WV++++
Sbjct: 416 AKVE---SLNGVTLATQNPYLSDPSVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
              A  + L + + + K      K  +   +K   ++ E+  +      +      +  +
Sbjct: 473 YHAAGVKPLAQAMNEAKAKVIDAKARKAAQAKIATMLTEFKTQ--PADQVVAKNKVAFES 530

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSK 580
                R    ++    +     FS       M            VV  V+N  
Sbjct: 531 AGVFTR----SQGLKREIERAAFSLATPKPGMWSVTTANLPNELVVVAVSNVN 579


>gi|241758711|ref|ZP_04756824.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114]
 gi|241320919|gb|EER57132.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114]
          Length = 617

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 118/638 (18%), Positives = 236/638 (36%), Gaps = 59/638 (9%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A+I L ++ + F+ +G ++   S  GS  +V VG +KV   +   + + E     Q  G 
Sbjct: 12  AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAGN 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
              S           I  +L+  A L Q  + +G+     ++   I   P FH    KFS
Sbjct: 65  NAPS--------RDAIFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D+    L +  + E ++++   +     +++ +   G   S+    Q        R++ 
Sbjct: 117 QDLLKKYLDQRKMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               +     A     +A L +++E +K +Y  P+  ++ Y+  ++ +   K  +S +E+
Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALNIKDLADKQTVSAEEV 236

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQSLKKGKK-FIQLA 300
           Q  Y+  K    SP    +  +  P             + E D+    LK     F +LA
Sbjct: 237 QKAYDS-KSVDLSP-RAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDAFAELA 294

Query: 301 EEQGKSLS----DISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            +  K LS      +LG  SK            + F+L K G+ +  I  S GY +  V 
Sbjct: 295 AKYSKDLSSSNKGGNLGYLSKSGGSGFGPEFDKAAFALGK-GEVSDTIKSSLGYHVIKVL 353

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVSI 413
           N++     + ++ K  I   +++ KA+       ++L E+     +S+ + +    +   
Sbjct: 354 NVEAE--PTLEQAKARIEAALKLKKAASAFNAAKEKLGEDTFNDPSSLAKAAANSGLKVE 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--DHTVALPDGSYMWVQIKES 471
           +L           G + A +P  E L+   F  D    K     +A+ + +   ++ KE 
Sbjct: 412 NLDE----WVTKAGAKEAGLP--ETLINAAFSDDVLKKKHNSEVIAINNETVWVIRAKEV 465

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
              +     EV   V+  +   +  +    KA + +             GK         
Sbjct: 466 REEKIAPFAEVKDTVRAAYLRSEATKLAEKKAQETLAAL--------KTGKAADVQWSPV 517

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF- 590
           +Q++  D           + + + PV     + +  G+   V     S   P     +  
Sbjct: 518 SQLSAQDARKTMSPEAYAALLKARPVGGKPAYALLEGMPAPVIMEVQSVSAPENADSQIP 577

Query: 591 --ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                L Q ++ ++ D+++ YL  +   T     +   
Sbjct: 578 AAKQALVQQLSANVFDNLLQYLGKKIDRTQGAQQVNNA 615


>gi|304322182|ref|YP_003855825.1| putative peptidyl-prolyl cis-trans isomerse D [Parvularcula
           bermudensis HTCC2503]
 gi|303301084|gb|ADM10683.1| putative peptidyl-prolyl cis-trans isomerse D [Parvularcula
           bermudensis HTCC2503]
          Length = 616

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 126/631 (19%), Positives = 254/631 (40%), Gaps = 21/631 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML   RKA++   A + L +  + F   G+     S SG    + VG      ++    +
Sbjct: 1   MLTTFRKATKGVGAWVVLGLAILAFAFVGVP--TLSGSGGQEAIRVGGTVFEVAAVEEEF 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +      +      + E A + GL  +++ +    A + +  + +GL      +   + 
Sbjct: 59  SRRFQRQQRGENAPASREEAVAAGLLDQVVRDYGLRALILEEADTLGLAVSPEMLTTYLR 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  +D +F  + F   LA   ++  E  D  +  L    +      G+    +L  
Sbjct: 119 AQPAFLDEDGEFDSNRFNRVLAANQLSLTELRDRLSLELIEGQLNRAVATGVGAPAILAQ 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                  E R V  +  +    P IA PS   L Q++E+ +  YR  E +  +Y+L    
Sbjct: 179 SLALRQGEERDVSLVTFSA---PEIAAPSEENLRQYYEERQGRYRTGEARGFTYLLLTDD 235

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
               +I IS+++++  Y+       +PEIR++ Q  F +   A +A  +++ G  F    
Sbjct: 236 TIGAEIAISDEDVRQLYDARVGSLGTPEIRSLTQAQFRDASAARDALAAIEAGAAFNDAV 295

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           E  G +L   +L   ++  I D ++A++ F+ A        I G FG V+ +++ I P+ 
Sbjct: 296 EAAGGTL--ATLDGVTESAIADQAVAEAAFAAASP-AILGPIDGIFGTVLVNLTQIVPAT 352

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T SF+EV++D+   +R     +++ + Y  ++     GT + E ++   + ++ +     
Sbjct: 353 TPSFEEVREDLEAALRQEDLGQRIDDIYTEIQFAGDDGTPLAEAAQGLDLSAVTISPKPL 412

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           A        +         L        P +    V LP+G   + ++ E +P+  +  E
Sbjct: 413 AA-------LQDDDRLPPALLAAVFTTAPGAYFEEVRLPEGGVAFFELGEIVPSSVQPFE 465

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
            V  +V  DW+T +  E +     + V+    +G++F D     G ++ T       +  
Sbjct: 466 AVEEEVATDWRTDQRIEALRG-VREAVMSAIADGQSFADAVAAEGETVSTRTL--SANVL 522

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK---VGPVQEKDKFISYLTQM 597
           N       +  +FS P+  V      +     + KV + +           +    L++ 
Sbjct: 523 NDDLPPALVEAIFSRPIGEVLDALGSDRTDLTLAKVEDVRFIAPSTAPSLAQLRQTLSRD 582

Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
           +  DL ++ +   +  Y + V+D L+     
Sbjct: 583 IATDLFEAYLLSAEQDYGIRVNDGLLAERFG 613


>gi|1574034|gb|AAC22665.1| peptidyl-prolyl cis-trans isomerse, putative [Haemophilus
           influenzae Rd KW20]
          Length = 594

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 98/593 (16%), Positives = 226/593 (38%), Gaps = 31/593 (5%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLD 100
             V  + +    F+N + QE  + +Q+ G      +        L + I++ ++    L 
Sbjct: 16  AKVNGEVISQQDFLNRYNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLR 75

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q+++++ L      +   I   P F  K  KF + V+   L +  +    Y       L 
Sbjct: 76  QYVKELKLGVSDEMIKRAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLP 134

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
              +              +  +   +F+ R      L+     A    S+  +  ++E  
Sbjct: 135 LEQIQNGVANSEFIVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEAN 194

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           + ++  PE  ++ YI        + +++++ E+   Y+ NK ++ +     +  + F N+
Sbjct: 195 QKSFVQPEQVKVQYIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANE 251

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           ++A  A++ L+KG  F  +A+ +        +   LG  ++  +P  +  D+  +L + G
Sbjct: 252 QDAKVAYEELQKGANFADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVG 309

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
            ++  I+    Y I  V   K     S + VK  IA+ +R +    +     K+  +   
Sbjct: 310 QYSQPINVDGNYHIVLVQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 366

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDH 454
                  ++   +   + +   D+  +    + V A      +++ +F  D  +      
Sbjct: 367 E--DSKSLNTAAQAAGVKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSE 420

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
            + + D   + V++ +      + LEE   D++   K  K    ++ KA Q V + S+  
Sbjct: 421 PINVGDYHTIIVRVLDRKAEGVKSLEEAKIDIETFLKRQKAENALNGKAQQAVKKLSENP 480

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
           ++  D     G +  +       +N++        S       + +      +    VV 
Sbjct: 481 ESKVD-----GINFSSEQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVV 535

Query: 575 KVTNSKVGPVQEKD--KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            +   + G + EK+  +F   L +    +L   +I  L+ +  + V+D+ I +
Sbjct: 536 ALNKVEQGSLSEKELSQFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 588


>gi|319779411|ref|YP_004130324.1| hypothetical protein TEQUI_1261 [Taylorella equigenitalis MCE9]
 gi|317109435|gb|ADU92181.1| hypothetical protein TEQUI_1261 [Taylorella equigenitalis MCE9]
          Length = 644

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 245/638 (38%), Gaps = 31/638 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE  RK S+ WV  I ++++   F+ +G S           +V V ++K+    F  SW
Sbjct: 1   MLEFFRKHSK-WVLFIIIILIVPSFVFFGTSKYSGMSISEKPLVKVNKEKITERQFNKSW 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            + L  +  ++G         +       L+ +V    + Q             V   IA
Sbjct: 60  TERLNSLRDQLGNNFKVSEIDTPANRNLWLNKIVDDILITQTANKNKFFGSDSMVRSAIA 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   D KFS + + + L    I  +EY ++         VV   +         L+
Sbjct: 120 LDPKF-AVDGKFSMENYNAFLTSANITSQEYENYLRANTGINLVVEPLINSTLVPLTTLE 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN-YRAPEYKRISYILFDV 239
           + K+   + R V   +  N             L  W++K  +  YR PEY  + Y L + 
Sbjct: 179 ELKKHVTKTREVQTKIFANEDFINAVSVDEKELEDWYKKNSEEKYRVPEYVNVEYFLLNQ 238

Query: 240 HEKEKKI-EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFI 297
                 + + + D L++ YE NK ++ + E R V  +   +++ A   ++ LK    KF 
Sbjct: 239 KAAVDLVPQPNEDALKSYYENNKNRFSTEERRFVRHIQLDSEERAKAIYEELKTTPNKFE 298

Query: 298 QLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +       + G   +   LG   K  IP   + +++F+L K G  T  +     + I  V
Sbjct: 299 EFVLSDSLDAGTKNNKGELGFLKKSDIPG--IENTVFALDKPG-ITGPVKLGNSFHIFDV 355

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIVS 412
             I+ +   SF+E+K  + N++++  AS+K  E    L   +      +  I+   ++  
Sbjct: 356 VQIEKAKVKSFEELKDTLVNEVKLQIASDKFAELSTNLTNLVHDRSDDLKTIAEDLQLQV 415

Query: 413 IDLPLVDFAG-------KDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463
             +  +  +G       + V   E+  I    +++   +  +  +       + +    +
Sbjct: 416 SQVFGLSKSGLISDVPNQMVLSDELKKIFNSPRVIDTAYSSEVYNQGQNSGVIEISPSEF 475

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           +  +I + + ++  +L+ V   V +D++  K AE ++ KA    +   K   +      +
Sbjct: 476 LVFKILDKVESKVPELKAVKAKVTRDYQLEKGAE-LAKKAGDEFINIYKNNPS-EAPKAS 533

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF-PIENGLSYVVFKVTNSKVG 582
            G+SLL       +   N     + +  V + P + +  +   E    Y V +V    + 
Sbjct: 534 DGSSLLRDPIETSIFASN--LPENLMRDVMAIPNDKLPTYVAGEVPDGYAVVRVIKDAIP 591

Query: 583 PVQEKDKFISY----LTQMMNKDLLDSVIAYLKSQYSV 616
             +    F       +   ++  + DS  A L+    V
Sbjct: 592 DERMVRVFEQQFPIIVKNGVSAQVGDSYKASLRKTNKV 629


>gi|285808228|gb|ADC35762.1| peptidyl-prolyl [uncultured bacterium 293]
          Length = 640

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 122/656 (18%), Positives = 248/656 (37%), Gaps = 47/656 (7%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLS--DALFSVSGSSTVVSVGRQKVPFSSFINS 59
           L  +R+  R W+  + L V  + F++  +    A         V  VG++K+    F  +
Sbjct: 3   LGYMRRH-REWLKYMLLAV-VLAFILLYIPAFQAGPGGGPGEEVARVGQEKITAGEFDRA 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           + ++   + ++    V+      +G+ +++L+ L+ G  + Q    +GL  D   V  +I
Sbjct: 61  FSRQRDALREQ---GVDPAMLEQLGVREEVLNGLIDGKLIVQEARRLGLAVDDEAVAAQI 117

Query: 120 ARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
            R   +  +  +F   D    RLA +GI+E E  +   + L    +  +   G+  S+  
Sbjct: 118 HR--EYQSRGGEFVGTDEIRRRLALQGISEDEKAEQVREQLLVQRLYALVTDGVHVSDQD 175

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            ++  R   E   V+Y+ ++       A  ++  +   F+  ++ YR PE + I Y+L D
Sbjct: 176 AEKEFRRSSEKVKVEYVAVDAAPFATRATATDEEVAARFQSRREAYRIPERRVIGYLLLD 235

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------- 285
                K++++S+ +++  YE ++ ++  P+      +    ++ AD              
Sbjct: 236 AMALSKEVKVSDVDIRTYYEDHETQFQQPDEACARHIEVKVKQTADAPAGHTEEEARVLA 295

Query: 286 --AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTP 340
                 +K G  F ++A++  +     S G       P+     L  +IF+L      + 
Sbjct: 296 QKLLDQVKGGADFAEVAKKSSEDPGTSSRGGDLGCGGPETWGPELGQAIFTLP-VNQVSD 354

Query: 341 VIHGS-FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
           +I     G+ I  V + +         VK+ I + +   K  E  +E   ++   LA G 
Sbjct: 355 LIRTQAHGFHIVQVLSRRQQGVQPLDSVKEGIRHILVQGKTRELAEERSSKISAALAKGE 414

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           S+++  +   +           G  +   +         LL R F      S        
Sbjct: 415 SLEKAGQLYGLTVQK-------GAPIARGQRVPPLDSPDLLARAFTLKRGESNPEPFGTA 467

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            G ++++ + +    R  +L EV   V+ D +  K       KA QL  +    G +   
Sbjct: 468 QG-WLFIDVLDIQAPRLPELAEVQDRVRADLQDEKARALARDKAVQLRAQAEGAGLDKAA 526

Query: 520 IGKNLG-ASLLTTNQINRMDNENKFFGYDGIS-QVFSGPV-EMVKCFPIENGLSYVVFKV 576
           +    G     TT  + R  +         +    FS PV  + +  P   G  Y V +V
Sbjct: 527 VALGPGLVRKETTTPVTRGQSFGDLGTNQALEDAAFSLPVQGLSEALPSPGG--YAVLRV 584

Query: 577 TN----SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
                        +K + +S L Q   + L  + I   + ++ +      ++R   
Sbjct: 585 LEKTPFDPAAFAAQKAEVVSKLEQQQKRQLFQAYIERARDRFPIERRPEALRRLKG 640


>gi|254480567|ref|ZP_05093814.1| SurA N-terminal domain family protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039150|gb|EEB79810.1| SurA N-terminal domain family protein [marine gamma proteobacterium
           HTCC2148]
          Length = 626

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 104/642 (16%), Positives = 223/642 (34%), Gaps = 41/642 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK S+  +AKI + ++ V F  +G+   L    GS  V  V  +++       + 
Sbjct: 1   MLQDIRKNSQGTLAKIIVGIIVVAFAGFGIESILLGGGGS-AVAEVNGEEITPQELQQAV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   +   +G  ++        L ++ +  L+S   L Q  +D+GL     +V   I 
Sbjct: 60  NNQKRQLISMMGENLDPAMLDDQLLSQQAMQTLISRKLLVQSADDMGLTVSDTQVGALIG 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F   D +FS +++ +RL   G     +    T  +    V     G    +   L+
Sbjct: 120 SMEQFQL-DGQFSPELYRARLGEAGFTPLLFKTTLTDDIKVGQVRSGLAGSEFATPGELE 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              R   E R + YI +      + A  S+  + Q++    D++ + E   + YI     
Sbjct: 179 LNARIVGEQRDLRYITIPLETHASEAVISDPQIQQYYADNSDSFLSEEAVELDYIELRSD 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-NQKEADEAFQ-SLKKGKK--- 295
              + +E     +   YE+            V  ++F     E+D ++Q  L   +    
Sbjct: 239 SFREAVE--EQMIVDAYEQEIANSQYQTENRVSHILFEQGGDESDSSYQERLSDAQSRLA 296

Query: 296 --------FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
                     +L+++ G + S   LG  S +  P   + ++I  L   G  +  +    G
Sbjct: 297 AGEAFAAVAQELSDDIGSASSGGDLGFTSGDAFP-AEMEEAIAELELNG-ISAPVVTDAG 354

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
             I  ++  +       +E++  +  Q+ +++A  ++    + L++      S+ + +  
Sbjct: 355 THIILLTERRSGEAPPLEELRAGLEEQLAMSEARVELLRMVETLKDLAFNAESLADPATE 414

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465
               S+ +   +   +D K      +     L+   F  D  +       + L    ++ 
Sbjct: 415 L---SLQIGQTEKISRDQKD----GLFANANLIAAAFSDDVLNAGHNSDVIELDQDHWVV 467

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           + ++   PA    LE+V   +       + A      A        + G+       + G
Sbjct: 468 LSVRAHHPAEVMPLEDVQGVIVAQLT-DERARAAVDAAAVQATSSLRAGEQVEAYATSAG 526

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC----FPIENGLSYVVFKVTNSKV 581
                    +R    N     D +   F             + +      +V++VT    
Sbjct: 527 YQWQVELAADR---RNTMVPADILQSAFQLAAPAEGSSVIDYVLSANGDALVYEVTRVSP 583

Query: 582 G-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           G     P  ++      +     + + +     L+    ++V
Sbjct: 584 GELASLPESDRAGLEQIVGGEYGQLIDNEYRQGLQDSADISV 625


>gi|88703271|ref|ZP_01100987.1| peptidyl-prolyl cis-trans isomerase D [Congregibacter litoralis
           KT71]
 gi|88701985|gb|EAQ99088.1| peptidyl-prolyl cis-trans isomerase D [Congregibacter litoralis
           KT71]
          Length = 622

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 109/638 (17%), Positives = 238/638 (37%), Gaps = 37/638 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++  VAKI + ++ + F I+G+   LFS  GS  V  V  +++   +     
Sbjct: 1   MLQDIRANAQGTVAKIIIGLIVISFSIFGIESLLFS-GGSDGVAEVNGEEITPFALQQEV 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   +   +G   +        L ++ L+ L+    + Q   D+ L      +   I 
Sbjct: 60  SVQQRRLLSILGENADPALLDQAQLSQQALETLIQREIIKQAAADLELTTSDQALADIIG 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F   D +FS D+F S LA  G     + +  ++ +    +     G    +   L+
Sbjct: 120 SMGQFQ-IDGQFSPDMFQSALASAGFTPALFRERLSEDVEIGQLRAGIAGSDFTTAAELE 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
            A     E R V Y+ L      A  + S+  +  ++    + +++ E   + Y+   + 
Sbjct: 179 LASAIALEGRDVRYVSLPLIDFMASVEVSDEAVEAFYNDNPERFQSEEQLVLEYVEITLD 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----ADEAFQSLKKGKK 295
              +  +I  + ++ E+E  ++++       V  ++     E       EA  +L  G  
Sbjct: 239 RYIE--DIDEERVREEFELVRDEFELATEARVSHILVEGDDEERAARIAEAQAALDAGMS 296

Query: 296 FIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F + A E    +        LG  + +  P+ ++ D++ +LA  G+ +  +    G  + 
Sbjct: 297 FAEAAAEYSDDIGSSQFEGDLGYTAGDTFPE-AMEDAVANLA-VGERSAPVETEAGTHLL 354

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            V++ +    VSF+EV +++ +++    A+ ++  D +RL +       +D  +      
Sbjct: 355 LVTDRREGSNVSFEEVAEELEDRIARRDAAAELLSDVERLRDIAFNAADLDAPAEA---- 410

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIK 469
              L L       V   +   +  +  LL   F +D  +       + L    ++ +++ 
Sbjct: 411 ---LELTVQTSDPVTRNQREGLFSRPVLLQAAFSEDVLEAGHNSEVLELSPEQFVLLRVA 467

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           E  P     LE V  ++ +D    + A E ++   + +L    +G    +     G    
Sbjct: 468 ERRPPAQVPLESVAGEI-EDLLRDRLAREAAAAEARELLAALDDGNTVEEAANAAGFQWQ 526

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--- 582
                 R   ++         ++FS         V+    ++  +  + ++     G   
Sbjct: 527 VELGARR---DSPTLPPVVRERLFSMAAPTDGNAVREIVSDDPDATYIVELARVNAGDPE 583

Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
             P +E++     +       L       L+ +  V V
Sbjct: 584 DLPAEEQNSLRQRIAGETGGTLQQQYERSLRERVEVIV 621


>gi|88607320|ref|YP_505198.1| ppiC/parvulin rotamase family protein [Anaplasma phagocytophilum
           HZ]
 gi|88598383|gb|ABD43853.1| ppiC/parvulin rotamase family protein [Anaplasma phagocytophilum
           HZ]
          Length = 601

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 114/610 (18%), Positives = 264/610 (43%), Gaps = 25/610 (4%)

Query: 32  DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
             L +      V  +G + +P   +   ++ EL  + + +   ++  +    G+ + +L 
Sbjct: 2   GKLSNSGNGQCVAMLGNKCLPLRDYRIMYRNELAELEKMLQHKLSDAQINQFGIKEVVLK 61

Query: 92  NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
           N+++   +++F  D+G+      +   I    +F   +  F  + + + LA  G+ E  Y
Sbjct: 62  NMIADMVVEKFAHDLGIRVGSNSLRSLIKNIRIFQDANGVFDQERYEAVLADSGMTESSY 121

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPS-----NLLLDQAKRFYFENRSVDYIVLNNRHVP-AI 205
           ++     L  T ++               + L         ++R  D + +++  V  + 
Sbjct: 122 VNKIRNALPSTILMECLFPNRAELHIPYYDALAKDVVLGLLQHRVADIVEISSDAVDISG 181

Query: 206 ADPSNAVLTQWFEK-YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
           +D S+  L + FE+ YK++   PEY+   YI+    +    + +S+ E+  E + ++   
Sbjct: 182 SDISDDELQKLFEEQYKNSLNFPEYRSADYIIMAEDDLLADVIVSDQEVDVEIKNSELH- 240

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
              + R V  LVF ++ EA+ A+++ ++GK F +L  + G ++ DI+L + SK+ +P V 
Sbjct: 241 ---DQRDVLNLVFTDKNEAELAYKAYQEGKSFEELVSDAGYTIEDIALNNISKDVLP-VG 296

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
           + + +F+L  +G+ + +     G+ I  V           +++K+ I++ +R  KA E +
Sbjct: 297 VRNVVFAL-NEGEVSEMFRSVVGWHIMKVIRKHEITKEDLEKLKEKISSNIRRQKAGELL 355

Query: 385 KEDYKRLEEFLALGTSMDEISRREKI-VSIDLPLVDFAGKDVKGKEVAAIPYKEQL-LFR 442
             + K+  + ++ G S++E+       +S  L   D  G D  G  V   P +  +  F 
Sbjct: 356 VSNVKKANDMISRGASLNELKDMFGARISGVLTNFDMHGLDKSGNLVKDFPLQLGINAFT 415

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                  + K   +     +Y  V + E +P R R LEE  + + ++WK+    +++   
Sbjct: 416 TLAFSSAVGKPSHLVSNGDAYFGVLVTEVVPPRPRTLEESRSILTEEWKSALRMKKIREF 475

Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE---NKFFGYDGISQVFSGPVEM 559
           A +L  +  + G     +    G S      + + D     +  +    + ++F+  +  
Sbjct: 476 AVELRSKL-QNGTELSVV---NGVSFKKNVTVKKSDGSTDNDSKYPERLVDEIFAINIGG 531

Query: 560 VKCFPIENGLS---YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           V    I++        + K         ++ + + ++        + + ++ YL  +Y V
Sbjct: 532 VTKEVIDSESETVYIALLKEIKDAEISEEDLESYKAHFVSSGILSIREQLLGYLMKKYGV 591

Query: 617 TVHDNLIQRY 626
           T+ ++L+++ 
Sbjct: 592 TIENSLLEKV 601


>gi|85374123|ref|YP_458185.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594]
 gi|84787206|gb|ABC63388.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594]
          Length = 647

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 115/638 (18%), Positives = 237/638 (37%), Gaps = 17/638 (2%)

Query: 1   MLEIIRKASRTWVAKIF----LVVLFVPFLIWGLS--DALFSVSGSSTVVSVGRQKVPFS 54
           M+   R+  ++ +        L ++ + F    +S       VSG   V  VG QKV  +
Sbjct: 1   MINSFRRFFQSKIGIGIFVGFLALIAIAFAGADVSSTGTFGGVSGGDRVAVVGEQKVGTA 60

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
               +    L  + Q    +         GL++ +++ L+    + +F    G+ A    
Sbjct: 61  ELSRAASNALDQLRQNDPTLSMPAFIDQGGLER-VVETLLDRIAIAEFGRKYGMRAGDNL 119

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V  EI R P+F G D  F  + + + +AR+G+ +    D     L    V+     G   
Sbjct: 120 VNSEIRRIPVFRGADGNFDEETYRAAIARQGLTDAVVRDDLGDGLIAQQVLVPGSFGATI 179

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + L  +    + E R     ++ +       +P++A +  ++   K +Y  PE + I Y
Sbjct: 180 PDKLASRYAALFKERRRGAIALIPSTSFAPDGEPTDAQVQAYYNANKGDYIRPERRVIRY 239

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
             F           +  E+   YE++  +Y + E RT+ QL+ P Q+ A      +  G 
Sbjct: 240 ATFGESAVADVGTPTAAEIANRYEQDASRYAASEERTLTQLIVPTQQAAQTFRDRVAGGA 299

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
               +A E G     I     S+      +          +G   PV     G+ +  V 
Sbjct: 300 SLETVAREAGLEAQQIGPIDRSEYGAQASAQVAQAVFGTARGQVAPVARSGLGWHVVRVD 359

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           ++      S  + +++I + +   +      E  + +E+  A G S+ +++         
Sbjct: 360 DVNRIEGRSLAQAREEIVSTLTQERRRRAFNELAESIEDRFADGESLADVAAEVGAEVQT 419

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
              +  AG     +   A     + L   F  ++      T A+P  ++M  +  +  P+
Sbjct: 420 TRPLTGAGIVYGTQNEQAPEILRRALATAFQMEEG-EPQLTEAVPGETFMLFEASDITPS 478

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
               L E+   V  DWK  + A+   +     VL+   +G++     +   AS+   +Q+
Sbjct: 479 APAPLAEIRDTVVADWKRAEGAKRARAA-ADRVLKRLGDGQSLAAAVRAEDASIPPIDQV 537

Query: 535 NRMDNENKFFGYDGISQ----VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
           N    +    G  G+      +FS      K       + + +  + + + G V   D  
Sbjct: 538 NLTREQLVQRGERGVPAPLALLFSMAQGTEKKLEAPRNIGWFIVDLDSIEAGVVGRDDPL 597

Query: 589 --KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
             +  S   Q   ++  + +   +++  ++  ++  I+
Sbjct: 598 FRQAKSQFGQTFGQEYGEQLRLAIRNDVTIERNEAAIE 635


>gi|302383248|ref|YP_003819071.1| rotamase family protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302193876|gb|ADL01448.1| rotamase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 638

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 108/634 (17%), Positives = 226/634 (35%), Gaps = 15/634 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDA-LFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+ + R  +++  A    V+L + FL+ G S   +FS  G   +V+ G + V    F   
Sbjct: 1   MISLFRAFAKSKWAAGLFVLLILSFLVVGGSQTDIFSSLGPKHIVTAGDRSVDALQFRTE 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +++    + ++ G  V +E      +  + L+   +      +    G+      V   I
Sbjct: 61  FERVRTGMQEQAGRPVTNEDLVKENVHVRYLEGQTNRLGFLDWAYKAGIRVSEELVLTRI 120

Query: 120 ARSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
              P F  +   +F    +   LA + +      D +               G+R   + 
Sbjct: 121 REIPAFFNQVTGQFDQAQYEQALAAQNVTPVMLEDEFRDTAVSQHYGTAIQAGLRTPRIY 180

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                   F+ R   +  +          P++A LT +  +     R PE++  + +LF+
Sbjct: 181 GALLAGQAFQVRDGRWFEVTQAMAGTTPAPTDAQLTAFINENAAQLRRPEFRIATVLLFN 240

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                    I    +   +   K+   +PE RT   L    Q  AD    +L+ G+    
Sbjct: 241 DAPGFTPPAIPEARVVERFNFRKDALSTPERRTFTTLTVSTQAAADRIAGALRAGQTPQA 300

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +AE     +      +  +  +PD ++A ++F LA     +  I G  G+ +A VS I P
Sbjct: 301 VAEANS--IQPAVYDAQPRSALPDPAVATAVFGLAAN-QVSAPIQGRVGFTVAKVSVILP 357

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
               +   V++ +  +++      +V    +  E+    G  +   + +     + LP  
Sbjct: 358 GTPATLDSVREAVTAELQEEDMKARVYARVEAYEKARTEGKPLAAAAEQVGARFVQLPPF 417

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G+   G+ + A P   Q+L   +        D  +    G Y  +++ +  PA    
Sbjct: 418 TQDGRLPDGQPMNAPP---QILQSAYALTKGGESD-VIDAGQGQYFVLRLDDIRPAALPT 473

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
           L E+   + + W   + A  +S+KA +L     + G++   +  + GA+L+    + +  
Sbjct: 474 LAEIRGPLAEQWTQRENARRLSTKAEELATR-VRGGQDIAAVAASAGATLINRTGLQQNA 532

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
                 G   +  +F      V   P      +VV +V   +        +    +   +
Sbjct: 533 ETQTALGQGVLEGLFGQARGQVFTGPGTEN-RFVVGRVDAVRSADPATASRLADQIRSRI 591

Query: 599 NKDL----LDSVIAYLKSQYSVTVHDNLIQRYLD 628
             D+    ++ ++     +             L 
Sbjct: 592 GNDIVTAGVEQLVTAAAVRSKAKNDPAAAVAALG 625


>gi|85708717|ref|ZP_01039783.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1]
 gi|85690251|gb|EAQ30254.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1]
          Length = 645

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 108/639 (16%), Positives = 238/639 (37%), Gaps = 19/639 (2%)

Query: 1   MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDA--LFSVSGSSTVVSVGRQKVPFS 54
           M+ + R   ++     +   FLV++ + F    +S +     ++G   V  VG + +  +
Sbjct: 1   MISLFRNFFQSKIGLPIFIGFLVLVALAFAASDISGSATFGGLTGDDKVAVVGGEPITSN 60

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
               +    L     +   +   +   + GL+++ L+ L+    + QF ++ GL A    
Sbjct: 61  EMSGAMNNALDRARDQNPTITMPQLVANDGLNRE-LELLIDRFAIGQFAQEYGLRAGENL 119

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V  EI +   F     +F    + + L R+GI +          L    ++       + 
Sbjct: 120 VNSEILQIGAFRNVTGEFDQATYQAALRRQGITDAILRKDIADGLLAQQLLRPAFAAPQL 179

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
                 Q      E R     ++ +       DP++  L  ++ + + N+  PE + I +
Sbjct: 180 PRAAARQYAALVLERRQGRIGLVPSSEYAPDGDPTDEQLNTFYSENRANFILPERRTIRF 239

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
             F     +   E ++ ++ A YE +  +Y + E R +   V P +  A    + ++ G 
Sbjct: 240 ARFGADSVQTVAEPTDAQIAARYEADAAQYAAQERRAISTFVVPTEAAAQALVERIRAGL 299

Query: 295 KFIQLAEEQGKSLSDIS-LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
                A++ G ++S    L   S       +LA+++F+   +GD         G+ +A V
Sbjct: 300 SLEAAAQQAGFNVSSGELLDRESMSSSTSFALAEAVFA-ESEGDVITPQRSQLGWYVARV 358

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +++ +   S  +V+ +IA Q+R    + ++ +   ++EE +  GTS+ + + +  +   
Sbjct: 359 DDVENTPARSLADVRGEIAAQIRREAVAAQLIDLSSQIEELVDTGTSLMDAATQFGLEVT 418

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
            +P V   G+               +L   F  D+         +    ++   + +   
Sbjct: 419 AVPGVLADGRIFGTPGQTLNQAVRPVLETAFQMDEG-EPQLAELVAGEQFLIFDVSDITE 477

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
           +    + EV  +V   W+  +        AN++ LE  + G    +  +    SL    +
Sbjct: 478 SAAPPIAEVREEVTAAWRRNEGNRIAQQAANRI-LEDVRSGTPLAEAMRAENPSLTQVER 536

Query: 534 INRMDNENKFFGYDGISQV----FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
           I+    E        +       FS      K    EN L + +  +    V  V   + 
Sbjct: 537 IDLERRELLANPNQRVPTALILMFSMAQGSTKILEEENDLGWFLVDLDEIVVPEVANDNP 596

Query: 590 FISY----LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            +      L Q +  +      A ++ +  V  ++  ++
Sbjct: 597 ILDQTQNSLAQALAGEYNAQFAAAVREEVGVERNEEAVE 635


>gi|283856265|ref|YP_162202.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|283775260|gb|AAV89091.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 642

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 109/644 (16%), Positives = 246/644 (38%), Gaps = 33/644 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGL-------SDALFSVSGSSTVVSVGRQKVPF 53
           M    R+ ++   A +   ++ + F+  G          +  S     T+  +G++K+  
Sbjct: 1   MFAFFRRMTKNGFAMLLFGIVILAFIFTGALGGFSRFGGSGSSDKDGGTIAKIGKRKLSA 60

Query: 54  SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
           S   +  +++   + Q+   +       S G+ K I    ++  ++ ++ ++ G+     
Sbjct: 61  SEAYDYIRRDYLAVRQQNPSIDAMTFVASGGIGKAI-SGYIAAKSMSEWAKNNGIGVSQK 119

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
            V GEIA  P+F G + KF   +F + LA++ +   +      + + R  ++   V G++
Sbjct: 120 MVDGEIASIPVFIGANGKFDQKLFDAVLAQQHMTADQLRSDIAEDMVRRQILIPIVAGLK 179

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             N + +   R   +      + +    + P+   P +  +  +++ + + Y  PE + I
Sbjct: 180 TPNAMAEPFARMLIQRHEGMILAIPTTVMPPSDKAPDDKAIADFYKSHIERYTLPEQRVI 239

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
            Y L        +++ +  ++   ++ +  +Y + E R + Q++ P++  A+     +  
Sbjct: 240 RYALVKP----DEVKPTEAQIADYFKSHASEYAATEKRDLSQIILPDKAAAEALLAKIHG 295

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYV 349
           G  F+  A+  G S  DI LG+ SKE   +      A++ FSL   G  + V+H   G+ 
Sbjct: 296 GLNFVAAAKTVGFSSEDIRLGTLSKEQYSEKASPEAANAAFSLG-DGAVSNVLHSPLGWH 354

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           I HV  I+     +  +++ +I  Q+  +  S+ +     R+++ ++ G    +I+ +EK
Sbjct: 355 IVHVDKIERKPAATLDQMRGEITRQLSESLTSKAMTAKINRIQDNISNGNGFSDIAHKEK 414

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
           +  +    +     D +          + L+   F               D  Y    + 
Sbjct: 415 LEVVQTAPLRRDASDDQ--------IVKSLVTPAFESGKNSEPFVATITADKLYALAMVD 466

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
             I    + LE+V   V  D +  +  E+    A+ L L+ +K G  F  +    G  L 
Sbjct: 467 HVIAPAAQPLEKVKNQVVMDIRHSEMVEKSRKLADDL-LKKAKSGVPFAQLAAQAGVKLP 525

Query: 530 TTNQINRMDNENKFFGYDGISQV---FSGPVEMVKCFPIENGLSYVVFK----VTNSKVG 582
               +     +   F       +   F      V   P  +   +++ K    V++    
Sbjct: 526 PVTPLAFRQLDLSRFQQSLPPAIIRFFELKPGEVALIPAPDESGWMLMKMERLVSSDPSK 585

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                    +    MM  D+ +     +  +    +      + 
Sbjct: 586 EAGLTAAVQNQFQNMMTGDIAEQFSNAVMQKSPAEIDQAAAVQL 629


>gi|260753024|ref|YP_003225917.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552387|gb|ACV75333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 642

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 109/644 (16%), Positives = 246/644 (38%), Gaps = 33/644 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGL-------SDALFSVSGSSTVVSVGRQKVPF 53
           M    R+ ++   A +   ++ + F+  G          +  S     T+  +G++K+  
Sbjct: 1   MFAFFRRMTKNGFAMLLFGIVILAFIFTGALGGFSRFGGSGSSDKDGGTIAKIGKRKLSA 60

Query: 54  SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
           S   +  +++   + Q+   +       S G+ K I    ++  ++ ++ ++ G+     
Sbjct: 61  SEAYDYIRRDYLAVRQQNPSIDAMTFVASGGIGKAI-SGYIAAKSMSEWAKNNGIGVSQK 119

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
            V GEIA  P+F G + KF   +F + LA++ +   +      + + R  ++   V G++
Sbjct: 120 MVDGEIASIPVFIGANGKFDQKLFDAVLAQQHMTADQLRSDIAEDMVRRQILIPIVAGLK 179

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             N + +   R   +      + +    + P+   P +  +  +++ + + Y  PE + I
Sbjct: 180 TPNAMAEPFARMLIQRHEGMILAIPTTVMPPSDKAPDDKAIADFYKSHIERYTLPEQRVI 239

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
            Y L        +++ +  ++   ++ +  +Y + E R + Q++ P++  A+     +  
Sbjct: 240 RYALVKP----DEVKPTEAQIADYFKSHASEYAATEKRDLSQIILPDKAAAEALLAKIHG 295

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYV 349
           G  F+  A+  G S  DI LG+ SKE   +      A++ FSL   G  + V+H   G+ 
Sbjct: 296 GLNFVAAAKTVGFSSEDIRLGALSKEQYSEKASPEAANAAFSLG-DGAVSNVLHSPLGWH 354

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           I HV  I+     +  +++ +I  Q+  +  S+ +     R+++ ++ G    +I+ +EK
Sbjct: 355 IVHVDKIERKPAATLDQMRGEITRQLSESLTSKAMTAKINRIQDNISNGNGFSDIAHKEK 414

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
           +  +    +     D +          + L+   F               D  Y    + 
Sbjct: 415 LEVVQTAPLRRDASDDQ--------IVKSLVTPAFESGKNSEPFVATITADKLYALAMVD 466

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
             I    + LE+V   V  D +  +  E+    A+ L L+ +K G  F  +    G  L 
Sbjct: 467 HVIAPAAQPLEKVKNQVVMDIRHSEMVEKSRKLADDL-LKKAKSGVPFAQLAAQAGVKLP 525

Query: 530 TTNQINRMDNENKFFGYDGISQV---FSGPVEMVKCFPIENGLSYVVFK----VTNSKVG 582
               +     +   F       +   F      V   P  +   +++ K    V++    
Sbjct: 526 PVTPLAFRQLDLSRFQQSLPPAIIRFFELKPGEVALIPAPDESGWMLMKMERLVSSDPSK 585

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                    +    MM  D+ +     +  +    +      + 
Sbjct: 586 EAGLTAAVQNQFQNMMTGDIAEQFSNAVMQKSPAEIDQAAAVQL 629


>gi|171058611|ref|YP_001790960.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
 gi|170776056|gb|ACB34195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
          Length = 637

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 99/648 (15%), Positives = 237/648 (36%), Gaps = 48/648 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + +R+     +     +V+   FL+ G+       + +  V ++  + +  + +  + 
Sbjct: 1   MFDFVRRH-NRLLQFGLALVIVPSFLVVGIQGYDQFSASNEAVANIDGRAITQTEWDAAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q++  +  ++   V+++   S  + +K+LD+LV    +    + + L     R+    A
Sbjct: 60  RQQVERVRAQMPG-VDAKLLDSPAIKQKVLDDLVRERVMLVAAQKLLLAPTDQRLQRLFA 118

Query: 121 RSPLF---HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P F      D     D     L   G+  +++     +  +   V     G    S  
Sbjct: 119 TDPQFASLRNADGSVRKD----LLEARGMTSEQFAQQLRQEFALRQVSLGLAGSALASPA 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK--YKDNYRAPEYKRISYI 235
           +  +A   +F+ R V   +   +   +    S+A    +++       +++PE   + Y+
Sbjct: 175 VTARAMDSFFQQREVQVALFPAKDYLSKVSASDAEQQAYYDDPRNAAQFQSPETVSVEYV 234

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEA 283
           + D+      I ++ D+L+  Y++N  +Y  P+ R    ++               +++A
Sbjct: 235 VLDLPAVTAGINVNEDDLRKYYDENAARYEQPQERRARHILVKLDADASDDAKAKAREKA 294

Query: 284 DEAFQSLKKG-KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
                 ++K    F  LA     + G +     L   ++  +      D++F L KKG+ 
Sbjct: 295 AALLAEVQKNRAAFADLARRQSDDPGSAAQGGDLDWIARGAMVKP-FEDAVFGL-KKGEL 352

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
             ++   FG  +  V++ +     +F  V+ ++  ++R   A ++  E  ++    +   
Sbjct: 353 GGIVETEFGLHVIEVTDTRGGEKRAFANVRGELEAEVRKQLAQKRYAELAEQFTNLVEQE 412

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            ++  ++   K+       +        G  V A P   + +F+        +    V  
Sbjct: 413 DTLKPVADALKLELHKADKLGRVAPAQPGN-VLASPKVLEAIFQPESLSGKRNI-EPVEA 470

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
                +  ++ E  PAR + L EV   ++    + K A+  +      + E+        
Sbjct: 471 AANQLVAARVLEHAPARKQPLAEVGERLRNAVISEKAAKAAADDGKTKLAEWQ------- 523

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKV 576
              K   A L     ++R   + +    + +  V   P + +  +      G  Y V K+
Sbjct: 524 --SKPESAKLGAALVLSRTQAQGQ--PREVVDAVLRAPADKLPGWIGVELGGQGYAVIKL 579

Query: 577 TNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
                       + ++  +   Q+ ++   D+    L  +Y   V D 
Sbjct: 580 AKVLAADPAATGDPERVKAQYAQLWSQAESDAYYRALSKRYKAEVTDK 627


>gi|241761010|ref|ZP_04759099.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241374629|gb|EER64090.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 642

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 109/644 (16%), Positives = 246/644 (38%), Gaps = 33/644 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGL-------SDALFSVSGSSTVVSVGRQKVPF 53
           M    R+ ++   A +   ++ + F+  G          +  S     T+  +G++K+  
Sbjct: 1   MFAFFRRMTKNGFAMLLFGIVILAFIFTGALGGFSRFGGSGSSDKDGGTIAKIGKRKLSA 60

Query: 54  SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
           S   +  +++   + Q+   +       S G+ K I    ++  ++ ++ ++ G+     
Sbjct: 61  SEAYDYIRRDYLAVRQQNPSIDAMTFVASGGIGKAI-SGYIAAKSMSEWAKNNGIGVSQK 119

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
            V GEIA  P+F G + KF   +F + LA++ +   +      + + R  ++   V G++
Sbjct: 120 MVDGEIASIPVFIGANGKFDQKLFDAVLAQQHMTADQLRSDIAEDMVRRQILIPIVAGLK 179

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             N + +   R   +      + +    + P+   P +  +  +++ + + Y  PE + I
Sbjct: 180 TPNAMAEPFARMLIQRHEGMILAIPTTVMPPSDKAPDDKAIADFYKSHIERYTLPEQRVI 239

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
            Y L        +++ +  ++   ++ +  +Y + E R + Q++ P++  A+     +  
Sbjct: 240 RYALVKP----DEVKPTEVQIADYFKSHASEYAATEKRDLSQIILPDKAAAEALLAKIHG 295

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYV 349
           G  F+  A+  G S  DI LG+ SKE   +      A++ FSL   G  + V+H   G+ 
Sbjct: 296 GLNFVAAAKTVGFSSEDIRLGALSKEQYSEKASPEAANAAFSLG-DGAVSNVLHSPLGWH 354

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           I HV  I+     +  +++ +I  Q+  +  S+ +     R+++ ++ G    +I+ +EK
Sbjct: 355 IVHVDKIERKPAATLDQMRGEITRQLSESLTSKAMTAKINRIQDNISNGNGFSDIAHKEK 414

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
           +  +    +     D +          + L+   F               D  Y    + 
Sbjct: 415 LEVVQTAPLRRDASDDQ--------IVKSLVTPAFESGKNSEPFVATITADKLYALAMVD 466

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
             I    + LE+V   V  D +  +  E+    A+ L L+ +K G  F  +    G  L 
Sbjct: 467 HVIAPAAQPLEKVKNQVVMDIRHSEMVEKSRKLADDL-LKKAKSGVPFAQLAAQAGVKLP 525

Query: 530 TTNQINRMDNENKFFGYDGISQV---FSGPVEMVKCFPIENGLSYVVFK----VTNSKVG 582
               +     +   F       +   F      V   P  +   +++ K    V++    
Sbjct: 526 PVTPLAFRQLDLSRFQQSLPPAIIRFFELKPGEVALIPAPDESGWMLMKMERLVSSDPSK 585

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                    +    MM  D+ +     +  +    +      + 
Sbjct: 586 EAGLTAAVQNQFQNMMTGDIAEQFSNAVMQKSPAEIDQAAAVQL 629


>gi|298368785|ref|ZP_06980103.1| peptidyl-prolyl cis-trans isomerase [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282788|gb|EFI24275.1| peptidyl-prolyl cis-trans isomerase [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 610

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 105/633 (16%), Positives = 229/633 (36%), Gaps = 65/633 (10%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A+I L ++ + F+ +G+S    +   S  +V VG QK+       + +       ++   
Sbjct: 12  AQILLGLIALTFVGFGVS--TVANPDSDYIVKVGNQKISDHDLNLAMQNIQASGGEQ--- 66

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                          +  +L+  A L Q  + +G+     ++   I   P FH  + KFS
Sbjct: 67  -----------PRDAVFQSLLQRAYLTQGAKQMGIAVSQEQIKQIIVDDPSFHDANGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
             +    L +  ++E ++++         ++  +   G   S++   Q        R+V 
Sbjct: 116 QALLTQYLNQRRMSEDQFVEEIRDQFLFQNLQNLVQNGTIVSDVQAAQLVNIAQATRTVR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
            +  N           +A+L ++++  K +Y  P+  +I  +         K  +S+ EL
Sbjct: 176 SVTFNPEAFAGQIKVDDAILQRYYDANKKDYIIPQAVKIELVALTTQALADKQTVSDAEL 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-------------LKKGKKFIQLA 300
           +  ++K       P  R +  ++FP  ++A    ++               K   F  LA
Sbjct: 236 RQAFDK------LPPRREIAHILFPVAQDASAEERAAAKAEAEKVLAMVKAKPSDFPALA 289

Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           ++  K      +  +LG   K+        ++ FS+ +KG+ + V+  ++GY I  + NI
Sbjct: 290 KQYSKDPASASNGGNLGFMPKDGGLGAEFENAAFSM-QKGEISNVVQTAYGYHIIKILNI 348

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +      F++ K ++  ++++ KA+       ++L E      +   ++   K + +++ 
Sbjct: 349 QDKPV--FEQEKAELEKELKLKKAAAGFNAAKEKLGEAAFNNPN--SLAEAAKALGLEVK 404

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--DHTVALPDGSYMWVQIKESIPA 474
           L D       G   AA    ++L+  VF  D    K     + + D +   V++KE    
Sbjct: 405 LSDEWLTKANG---AAAGMPQELINAVFSDDVLKKKHNSEPITINDNTVWVVRVKEVREE 461

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           R     EV  DV+  +   +  +    KA   + +           GK          ++
Sbjct: 462 RTAPFAEVKDDVRAAYLRSEAVKLAEKKARAALADL--------QAGKKTELQWSPVTKL 513

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---I 591
                              + P +    + +  GL   V     +   P     +     
Sbjct: 514 TAEQARQSMPPEAYSELAKARPSKDKPAYVMLQGLPAPVIVEVQAVTPPENVAQQIPAAK 573

Query: 592 SYLTQMMNKDLLDSVIAYL-----KSQYSVTVH 619
             L Q       ++++ YL     + +    ++
Sbjct: 574 QLLMQQQVNSTFNNLLRYLSKNIDRKEGGQKIN 606


>gi|332185866|ref|ZP_08387613.1| hypothetical protein SUS17_824 [Sphingomonas sp. S17]
 gi|332014224|gb|EGI56282.1| hypothetical protein SUS17_824 [Sphingomonas sp. S17]
          Length = 650

 Score =  306 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 117/643 (18%), Positives = 237/643 (36%), Gaps = 22/643 (3%)

Query: 1   MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFS 54
           ML   R+   +     V  I L V+ + F    +S+      G   STV  VG  KV   
Sbjct: 1   MLSFFRRIINSKAGVIVTFIVLGVIAIAFAAGDVSNIAGMAGGLTGSTVAKVGSAKVTVD 60

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
               + + E+    Q+    ++  +  + G  + +L   V+G +L+QF +D G+      
Sbjct: 61  DLRTAAQNEVAAYRQEQP-TLDMAQFIAAGGFEGVLQREVTGLSLEQFGKDQGMVVSRRL 119

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V G+IA  P F G + +F   ++   LA+  + + +      + L    +    +G  + 
Sbjct: 120 VDGQIASIPAFRGPNGQFDPALYQQLLAQRKMTDAQVRTDLQRTLFAQQLTVPTIGATQM 179

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           ++ +         E R  +   +  R V A   PS+A +  ++ +    Y  PE + + Y
Sbjct: 180 ASQMALPYASLLLEKRQGEVGYIPTRLVNAGGAPSDADIQTFYSRNVQRYTLPERRVVRY 239

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
            L        +   ++ E+   Y+ N  +Y + + R V Q++  +Q  A+      K G 
Sbjct: 240 ALVTPSAIAAQSAPTDAEIARYYQTNAARYAATQKRDVTQVIVADQAGANALATRAKGGA 299

Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
              + A   G   S    +   +++ +  P  ++AD++F  A+ G     I G  G+V+A
Sbjct: 300 SLAEAARAAGLEASVQKGVDKATYATQSAP--AVADAVFGAAQ-GAVVGPIRGPLGFVVA 356

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            V  +      +  + + +I  ++   K +  + E    +E+ L+   + DE+    K+ 
Sbjct: 357 RVDAVTQVPGKTLAQARPEIVTELTKQKQTAALGEMRNAIEDSLSGNATFDEVIADRKLQ 416

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
           +   P V   G             +  ++   F  +D  +        DG +  V + + 
Sbjct: 417 AQATPAVTAQGAAPDAPAFQPSAEQRAMITAAFTAEDGDAPQIVPIGQDGGFAVVGVGQI 476

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
             +  R L +V   V  D    +        AN ++ + +K G       K  G ++   
Sbjct: 477 QRSAPRPLAQVRQQVIADLTADRARAAARKLANAVLAKVNK-GMPMAQALKETGLAVPPV 535

Query: 532 NQINRMDNE----NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
             I     +            ++ +FS P    K         + + +VT    G     
Sbjct: 536 RPIAASRRDLAAAQNTPAAAPLALLFSMPQNKAKTLEAPANEGWYIIRVTKIDAGNATGN 595

Query: 588 DKFISYLTQMMNKDLLDSVIA----YLKSQYSVTVHDNLIQRY 626
              I    Q + + +    ++     ++    V      + + 
Sbjct: 596 AAAIQAARQDIGRLIGREYVSQFARAVRDTVGVKTDPKAVAKV 638


>gi|225075250|ref|ZP_03718449.1| hypothetical protein NEIFLAOT_00253 [Neisseria flavescens
           NRL30031/H210]
 gi|224953425|gb|EEG34634.1| hypothetical protein NEIFLAOT_00253 [Neisseria flavescens
           NRL30031/H210]
          Length = 617

 Score =  306 bits (784), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 116/638 (18%), Positives = 234/638 (36%), Gaps = 59/638 (9%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A+I L ++ + F+ +G ++   S  GS  +V VG +KV   +   + + E     Q  G 
Sbjct: 12  AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAGN 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
              S           I  +L+  A L Q  + +G+     ++   I   P FH    KFS
Sbjct: 65  NAPS--------RDAIFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D+    L +  + E ++++   +     +++ +   G   S+    Q        R++ 
Sbjct: 117 QDLLKKYLDQRKMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               +     A     +A L +++E +K +Y  P+  ++ Y+  ++ +   K  +S +E+
Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALNIKDLADKQNVSAEEV 236

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQSLKKGKK-FIQLA 300
           Q  Y+  K    SP    +  +  P             + E D+    LK     F +LA
Sbjct: 237 QKAYDS-KSVDLSP-RAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDAFAELA 294

Query: 301 EEQGKSLS----DISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            +  K LS      +LG  SK            + F+L K G+ +  +  S GY +  V 
Sbjct: 295 AKYSKDLSSSNKGGNLGYLSKSGGSGFGPEFDKAAFALGK-GEVSDTVKSSLGYHVIKVL 353

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVSI 413
           N++     + ++ K  I   +++ KA+       ++L E+     +S+ + +    +   
Sbjct: 354 NVEAE--PTLEQAKARIEAALKLKKAASAFNAAKEKLGEDTFNDPSSLAKAAANSGLKVE 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--DHTVALPDGSYMWVQIKES 471
           +L             + A +P  E L+   F  D    K     +A+ + +   ++ KE 
Sbjct: 412 NLDE----WVTKADAKEAGLP--ETLINAAFSDDVLKKKHNSEVIAINNETVWVIRAKEV 465

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
              +     EV   V+  +   + A+    KA + +              K         
Sbjct: 466 REEKIAPFAEVKDTVRAAYLRSEAAKLAEKKAQETLAALKAG--------KAADVQWSPV 517

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF- 590
           +Q++  D           + + +  V     + +  G+   V     S   P     +  
Sbjct: 518 SQLSAQDARKTMSPEAYAALLKARSVGGKPAYVLLEGMPAPVIMEVQSVSAPENADSQIP 577

Query: 591 --ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                L Q ++ ++ DS++ YL  +   T     +   
Sbjct: 578 AAKQALVQQLSANVFDSLLQYLGRKIDRTQGAQQVNNA 615


>gi|262370474|ref|ZP_06063800.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
 gi|262314816|gb|EEY95857.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
          Length = 621

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 104/637 (16%), Positives = 219/637 (34%), Gaps = 37/637 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E  RK  + W+ K  L++   P  + G+    FS      V SV  Q +          
Sbjct: 1   MESFRKVIKGWLGKALLILFLTPLALVGIEGY-FSSGSKDAVKSVNGQDISEKELETLTA 59

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                         +        +  K +D L++   L Q  E +G+     ++   IA+
Sbjct: 60  SFKEQFLAYANG--DETLLNQSFIKDKAMDQLIANTLLLQQAEKLGISLSDTQIEQMIAQ 117

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            P F  ++ KFS   + S L   G++    + +  +  +   +   FV     S L + Q
Sbjct: 118 QPSFQ-ENGKFSETRYSSYLQSVGMSSDALVANLRQDHALKMMRSTFVDYALVSKLDIQQ 176

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R+V +  +N          S   +  +++++   ++      + Y+L     
Sbjct: 177 IANLQTEQRTVQFANVNLDEYKKNVKVSAQEIENYYKQHPAMFKQVASVDVDYVLLAPAN 236

Query: 242 KEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEADEAFQSLKK 292
                  +++ ELQ  Y +  E         V+ ++           +K A+E    +K 
Sbjct: 237 VPAAASPVTDAELQQAYTQFVEAQKDNVAPLVKHILITTDARTDAEAKKRAEEVVAKIKA 296

Query: 293 GKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F   A +  +  +  + G     ++K    D +   ++ SL K G  +  +   FGY
Sbjct: 297 GTSFAAAAAQYSEDTASKANGGALAVYNKGTFGD-AFDQAVASL-KSGQVSAPVKTEFGY 354

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +   ++       SF+  K  +  +++  K +    +    L E +    ++D +S+  
Sbjct: 355 HVIE-TDAPAVKLPSFENEKARLTAEVQKNKTANAFSDTVNSLNELVVDSDALDVVSQEV 413

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
           K V +                V +    +  LF    K+   +   ++ LP+G  +W ++
Sbjct: 414 KGVQV---QTVKGMTLSTQHPVLSNAAVKVKLFNDDVKNGDRNATSSIQLPNGDVVWAKV 470

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
           ++   A  + L+E    VK      K  +   +K  Q + ++  +      +    G + 
Sbjct: 471 RDYHAAGVQTLQEATPRVKAKLVEQKAYDAAKAKIAQSLKDFKTQ--PAASVVAKSGLTF 528

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN---GLSYVVFKVTNSK----- 580
                  R    ++          FS        + +         VV  V+N       
Sbjct: 529 TAPQVFIR----SQGLPRAVERAAFSQAAPKAGQWSVTTALLPTEMVVVAVSNVNKTTSS 584

Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               ++  +      Q+  +   +  + YLK+   + 
Sbjct: 585 ALTDEQLAELSKLYQQLRGQQEAEDYVQYLKAHAKIK 621


>gi|21672727|ref|NP_660794.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008943|sp|Q8K987|PPID_BUCAP RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
 gi|21623371|gb|AAM68005.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 621

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 109/636 (17%), Positives = 251/636 (39%), Gaps = 33/636 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ ++      + K  L ++ +  + +G  +  F+   +  +  V  +++ F +    +
Sbjct: 1   MIKYLKSRLNIIIVKCILGIIILSLV-FGTINNYFNRDTTRYIAKVNGEEISFITLQKMY 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E     + +G      +      ++    IL  L++   L+Q+ + +        +  
Sbjct: 60  IDERKKQEKILGQDFEKIKKNKKFKEETYNYILSQLINNILLEQYTKRMNFNIQDNEIKK 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P+F  ++N+F+   +++ L+ + +   EY+    K L+ T ++          + 
Sbjct: 120 IIFNIPIFQ-ENNEFNKKKYLNYLSSKNLTHYEYVSLIRKKLNTTYLINAISETDFILDN 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              +  +   E R +   ++    +      +   +  +F+++K+ +  PE  +ISYI  
Sbjct: 179 EQKKIIKLLSEKRIIKKAIIKINPIINNQKVTEKEINNYFDQHKNEFYTPEKFKISYIQL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
             ++   KI+ SN+E++  Y+KN +KY + E R    +    + EA      LKKG+ F 
Sbjct: 239 KPNKF--KIQCSNEEIKNWYKKNIDKYSNQERRQYSIIQTKTKNEALSILSELKKGEDFS 296

Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           ++A+E+           ++G  +K ++P+      I +L K    + +I  +  ++I  +
Sbjct: 297 KIAKEKSIDPFSSEQGGNIGWITKNFVPN---EIKIANLEKIDQISNIIKFNNNFLIIKL 353

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + I P       EV   I N+++  K+    K+   ++   +    +++      K  +I
Sbjct: 354 NKILPKKYKKISEVSDLIENEIKYQKSLNTYKKLKDKI--AIIAKKNINRFDLILKKTNI 411

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSYMWVQIKES 471
                ++  KD   KE+     K+ +  +         K H+  + L D     + IK  
Sbjct: 412 LPKETNWFDKDSVPKELQNPILKKIIFKKGLLDRQKKLKSHSGLIVLNDHQSFLLSIKNF 471

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
              R +KL+++  ++    K +K  E+  +K  +++ +  K G     I K         
Sbjct: 472 QKKRIKKLKDIKRNIVNKLKYIKAVEKTKNKLKKILFQL-KIGN--EHILKKENIIFEEY 528

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQ 585
             ++R D          IS +F+ P       V         ++V+  +          +
Sbjct: 529 ETVSRYDK------NPNISVIFAMPHPKEEKNVYTMYQNKNKNFVIALLDKVYNEKFSNE 582

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
           E+   I YL +          +  L  + ++  +  
Sbjct: 583 EEKIIIKYLEKNNIDVTFQCFLQNLHRKATILYNKT 618


>gi|255067897|ref|ZP_05319752.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria sicca ATCC
           29256]
 gi|255047885|gb|EET43349.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria sicca ATCC
           29256]
          Length = 616

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 117/626 (18%), Positives = 246/626 (39%), Gaps = 58/626 (9%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A+I L ++ + F+ +G+S    +V GS  +V +G +K+   S  N  + E   +  +   
Sbjct: 12  AQILLGLIALTFVGFGVS--TVAVPGSDFIVKIGDEKISEYSLNNELQGE--QLQGQSPS 67

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                          +  +LV  A L +  + +G+E    ++   I   P FH ++ KFS
Sbjct: 68  ------------RGAVFQSLVQRAYLKEGAKLMGVEVSQEQLKQLIVDDPNFHDQNGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
             +F + L++  + E +++    +  +   ++ +   G   S+   +Q  +     R + 
Sbjct: 116 QQIFSNFLSQRHMTEDQFVADIRERYALQSLINLVQNGAIISDAQAEQLIKLTQATRDIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
            +  N     +     +A L  ++E +K +Y  P+  ++ YI     +   K  +S DE+
Sbjct: 176 SVTFNPEAFVSQVKVDDAALKAYYEAHKKDYLIPQGVKLEYIALSAKDLADKQAVSEDEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AFQSLKKGKKFIQLA 300
           +  +++          R +  + FP  ++ADE             A +   K   F  LA
Sbjct: 236 KKAFDEQAPHLSP--RREIAHIFFPVPQDADETVRAAIKAEADKVAAELKAKPADFADLA 293

Query: 301 EEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           ++  K  +      +LG  SK+      L +  FSL K G  + V+    GY I  V NI
Sbjct: 294 KKYSKDTASASKGGNLGYLSKDGGLGTDLENVAFSLPKGG-ISDVVQTPVGYDIVQVLNI 352

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVSIDL 415
           +     S +  K  I   +++ KA+ +     ++L EE     TS+ +++++    ++ L
Sbjct: 353 EDKV--SLEHEKARIEADLKLKKAASEFNSVKEKLSEEAFNTPTSLADVAKK---TNLKL 407

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK-DHTVALPDGSYMWV-QIKESIP 473
             +D         + A +P  + L+   F +D    K +  +   D   +WV ++KE   
Sbjct: 408 ESLDQDWLTQANGKAAGLP--DALINAAFSEDVLKKKHNSDLISMDKDTVWVIRVKEVRE 465

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
            +     +V  +V+  +   + A+    KA + +             GK +       ++
Sbjct: 466 EKTAPFADVQEEVRLAYLRSEAAKLADKKAKEAIEAL--------KAGKAVDLKWSEVSK 517

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVGP--VQEKDK 589
           ++  D             + + P      + +  E   + V+ +V N         +   
Sbjct: 518 LSAQDARRTMAPEAYNELIKARPQNGKPAYAMLLEGMPAPVIVEVQNIAAPENIASQVPA 577

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYS 615
               L Q  + ++ D+++ Y   +  
Sbjct: 578 AKQMLAQQQSANIFDALLRYFSKEIK 603


>gi|254514389|ref|ZP_05126450.1| peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium
           NOR5-3]
 gi|219676632|gb|EED32997.1| peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium
           NOR5-3]
          Length = 622

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 106/636 (16%), Positives = 244/636 (38%), Gaps = 33/636 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  ++  VAK+ + ++ + F I+G+   LFS  GS+ V  V  +++   +     
Sbjct: 1   MLQDIRANAQGTVAKVIIGLIVISFSIFGIESLLFS-GGSNGVAEVNGEEISPFALQQEL 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +   +   +G   +        + ++ L+ L+    + Q  +D+GL      +   + 
Sbjct: 60  SVQQRRLLSILGEDADPALLDQAQMSQQALETLIQREIIKQAAKDMGLNTSDQAIADIVG 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F   D +FS D+F   LA  G     + +   + +    +     G    +   LD
Sbjct: 120 SMEQFQ-IDGQFSPDLFQGALASAGFTPALFRERLAEDVEIGQLRAGVAGSDFSTEAELD 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
            A     E R V YI L      A  + S+  +  ++++  + +++ E   + Y+   + 
Sbjct: 179 LAASIALEGRDVRYISLPLLDFIASVELSDEAVETFYQQNPERFQSEESVILEYLELGID 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEAD---EAFQSLKKGKK 295
              K  ++  + L+ E+E  ++++       V  ++    +   A+    A ++L +G  
Sbjct: 239 AYRK--DVDEERLREEFELVRDEFELSAEARVSHILIEGSDADRAERIAAAQKALSEGMS 296

Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F   A E     G +     LG  + +  P+ ++ ++I +L   G+ +  +    G  + 
Sbjct: 297 FADAAAEFSDDIGSAQDGGDLGYTAGDTFPE-AMEEAIAALG-VGEQSAAVETEAGTHLL 354

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            V++ +   +VSF++V  ++ ++++   A+  +  D +RL +       ++  +   ++ 
Sbjct: 355 LVTDRREGSSVSFEDVAAELEDRIQSRDAAADLLVDVERLRDIAFNAADLNAPAEALELE 414

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIK 469
                 V          +   +  +  L    F +D  +       + L    ++ +++ 
Sbjct: 415 VQTSEPVSR-------NQQEGLFARPALRQAAFSEDVFEAGHNSEVIELNPEQFVLLRVA 467

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           E  PA  + LE+V   ++ + +     E  +++A +L+   S+ G    +     G    
Sbjct: 468 ERRPAALKPLEDVRAAIEVELREQLAKEAAAAQAMELMAALSQ-GSTVEEAANAAGLQWQ 526

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG------- 582
                 R          + +  +   P +      I +      + V  ++V        
Sbjct: 527 VELGARRNSRSLPGVVRERLFAM-PAPEDGSPTREIVDEDPDATYLVELARVSSGNPADM 585

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           PVQE++     +       L       L+ +  V V
Sbjct: 586 PVQERELLRQRIAGETGGILQQQFETGLRERAEVIV 621


>gi|116619198|ref|YP_821354.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116222360|gb|ABJ81069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 644

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 112/655 (17%), Positives = 240/655 (36%), Gaps = 45/655 (6%)

Query: 1   MLEIIRKASR--TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV-VSVGRQKVPFSSFI 57
           M ++ R   +    +    L V+ +  L + + +     S S  V   +G+  +      
Sbjct: 1   MFDLFRSRDKMVRILLGALLGVVALSMLTYLVPNYNTGSSTSDVVVAEIGKDTITLPEMQ 60

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              +  +       G  + +E         +++D +V+   +    E +G +     V  
Sbjct: 61  RVIQATIR------GRQLPTEIL--PTYIPQMVDQMVTERAMAMEAERLGYQVSDADVAD 112

Query: 118 EIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            I +       D KF   + + + LA++ +   ++     + ++ +    + + G   + 
Sbjct: 113 SIRQMVPSLFPDGKFVGKETYAAMLAQQNMTIDQFEADLKRQVAISRFRDIAMEGTIVTP 172

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             ++ A +   E   V+++ L        + PS   L  +++     Y  PE + ++ + 
Sbjct: 173 AEIEAAFKKKNEKIKVEWVKLTADKYKGESQPSAQELQDFYKANVSRYTVPEKRNLTVLT 232

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-----------KEADE 285
            D  +    + I++ +LQ  Y++NKE + +PE      ++   Q            + + 
Sbjct: 233 ADEAKMSASLNITDADLQRVYDQNKEAFRTPERVKARHILLKTQGKPASEEAAIKAKGES 292

Query: 286 AFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
             + +K G  F +LA+E     G +++   LG +            +IF+L K G+ + +
Sbjct: 293 LLKQIKAGGDFAKLAKENSEDPGSAVNGGDLGDWITHGQMVAEFDKAIFAL-KPGEVSDL 351

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL-ALGTS 400
           +   +GY I      + +   +F EVK D+A Q +  + SE +++   R +  L      
Sbjct: 352 VKTQYGYHIVQTLAKQDAGMRTFAEVKGDLATQYKKQRVSELMQQASDRAQAALQKDPQH 411

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
            ++++    +    +P     G   +    A        L +          +  V    
Sbjct: 412 PEKVAAELNMQLAKVPNFAPGGAIGELPANADFDQSVANLKKGEVSQPVTVNNKVVVAVV 471

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
                    + IP      EEV   ++      + A  V   AN+LV +    G +    
Sbjct: 472 --------DDVIPGHPSTFEEVQGQIRDTIVANRAAAAVQRHANELVEKAKAMGGDLEKA 523

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
            K++G  + T+  ++R  N         I++ FS P   V           VV KV +  
Sbjct: 524 AKSMGLDVKTSGDVDRSGNIEGLGTASYIAEGFSRPDGTVYGPIGTPDGGTVVMKVISHT 583

Query: 581 VGPVQE--------KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
              + +        +D+  S   +  N    + V   L  Q  + +H ++I R +
Sbjct: 584 GADMAQLPAQRNAIRDEIKSQRARDRNTLFENGVKDMLIKQGKIKIHQDVINRLI 638


>gi|114799881|ref|YP_760495.1| peptidylprolyl cis-trans isomerase-like protein [Hyphomonas
           neptunium ATCC 15444]
 gi|114740055|gb|ABI78180.1| peptidylprolyl cis-trans isomerase, homolog [Hyphomonas neptunium
           ATCC 15444]
          Length = 637

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 108/629 (17%), Positives = 248/629 (39%), Gaps = 19/629 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFIN 58
           ML +++K +R+ V K+ L+++ V    WG+   +  +     + VVS G + +  +    
Sbjct: 1   MLALMKKMTRSPVGKLVLMIVIVGMAFWGVDAIVNQMRSGLGANVVSAGSRGLDPADLDF 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
             +  L  I+      ++   A   GL  +I++   +  T   + E IG+      V  E
Sbjct: 61  RVETVLRNINATAERPLSKSEALEQGLIDQIVEVEKARITRLGYGESIGISPSPEAVVEE 120

Query: 119 IARSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           +   P F      +    +F  R+++ G++  ++       +    +       +    +
Sbjct: 121 MNSIPAFQNPLTGELDPAMFRDRISQLGMSPAQFERQLQDDILIRALSQAGRSAVYGPQV 180

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           + +    +  E R V +   +    PA   P++A +  +++++ +  + PE + +  +  
Sbjct: 181 IANIQANYLGETREVAWFFFDASDAPAPEVPTDAEIKAYYDEHLERLKQPERRALDILRM 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
              +   K+E+++ E+   YE  K E++ +P+ RT  +L+FP +  A  AF  L  G   
Sbjct: 241 STDDFTGKVEVTDQEVATVYEATKSERFAAPDQRTYAELLFPTRDAARTAFGLLAGGADP 300

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA-KKGDFTPVIHGSFGYVIAHVSN 355
             +        + + + +   E I D +L D++F    + G           +++A + +
Sbjct: 301 NSV-----TGANSVQMRTARAEDISDQALQDAMFGPGRQSGAMYGPREVDGQWLVARLIS 355

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           ++P      +EV ++I   +   +A        + L+E LA G  + +++    +  I +
Sbjct: 356 VQPGAVKPLEEVAEEIRLGLARERAQLLFSAALETLDEALAAGNDLSQVAEDIGVPIISI 415

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFG-KDDPLSKDHTVALPDGSYMWVQIKESIPA 474
             VD  G   +G +   +    + L + F   ++ +     VA    S + V  +  +PA
Sbjct: 416 APVDQNGITEQGNQFTILSEVPEALPQAFRLPENEIGSRFDVA---SSVVLVAPRRIVPA 472

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQ 533
              +L+ +   V     + +TA    +    L                  GA +      
Sbjct: 473 ATPELDAIKDRVSAMIVSERTANAAEAAVEALTERVRAGSVTLDAAAAESGAQVDRLPEP 532

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
           ++R + +        +   F+ P   V   P  +G  + + K+ +          + I+ 
Sbjct: 533 VSRSNAQAMGVPGPLMQATFNNPAGSVISLPTGDGSVFAILKILSVSPP----TPEMIAS 588

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
           +    + D+ +S+ A L++     +   +
Sbjct: 589 MGTAASADVTESLTADLEAAVDDEIRRAV 617


>gi|14582889|gb|AAK69701.1|AF356511_1 putative peptidyl-prolyl cis-trans isomerase D [Anaplasma
           phagocytophilum]
          Length = 575

 Score =  299 bits (766), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 111/573 (19%), Positives = 246/573 (42%), Gaps = 22/573 (3%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
            +A +   + FV F        L +      V  +G + +P   +   ++ EL  + + +
Sbjct: 11  VMATVLGAMAFVTFGSMIPMGKLSNSGNGQCVAMLGNKCLPLRDYRIMYRNELAELEKML 70

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              ++  +    G+ + +L N+++   +++F  D+G+      +   I    +F   +  
Sbjct: 71  QHKLSDAQINQFGIKEVVLKNMIADMVVEKFAHDLGIRVGSNSLRSLIKNIRIFQDANGV 130

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-----NLLLDQAKRFY 186
           F  + + + LA  G+ E  Y++     L  T ++               + L        
Sbjct: 131 FDQERYEAVLADSGMTESSYVNKIRNALPSTILMECLFPNRAELHIPYYDALAKDVVLGL 190

Query: 187 FENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEK-YKDNYRAPEYKRISYILFDVHEKEK 244
            ++R  D + +++  V  + +D S+  L + FE+ YK++   PEY+   YI+    +   
Sbjct: 191 LQHRVADIVEISSDAVDISGSDISDDELQKLFEEQYKNSLNFPEYRSADYIIMAEDDLLA 250

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
            + +S+ E+  E + ++      + R V  LVF ++ EA+ A+++ ++GK F +L  + G
Sbjct: 251 DVIVSDQEVDVEIKNSELH----DQRDVLNLVFTDKNEAELAYKAYQEGKSFEELVSDAG 306

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            ++ DI+L + SK+ +P V + + +F+L  +G+ + +     G+ I  V           
Sbjct: 307 YTIEDIALNNISKDVLP-VGVRNVVFAL-NEGEVSEMFRSVVGWHIMKVIRKHEITKEDL 364

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI-VSIDLPLVDFAGK 423
           +++K+ I++ +R  KA E +  + K+  + ++ G  ++E+       +S  L   D  G 
Sbjct: 365 EKLKEKISSNIRRQKAGELLVSNVKKANDMISRGALLNELKDMFGARISGVLTNFDMHGL 424

Query: 424 DVKGKEVAAIPYKEQL-LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
           D  G  V   P +  +  F        + K   +     +Y  V + E +P R R LEE 
Sbjct: 425 DKSGNLVKDFPLQLGINAFTTLAFSSAVGKPSHLVSNGDAYFGVLVTEVVPPRPRTLEES 484

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE-- 540
            + + ++WK+    +++   A +L  +  + G     +    G S      + + D    
Sbjct: 485 RSILTEEWKSALRMKKIREFAVELRSKL-QNGTELSVV---NGVSFKKNVTVKKSDGSTD 540

Query: 541 -NKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572
            +  +    + ++F+  +  V    I++    V
Sbjct: 541 NDSKYPERLVDEIFAINIGGVTKEVIDSESETV 573


>gi|260219734|emb|CBA26579.1| hypothetical protein Csp_E36670 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 587

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 81/469 (17%), Positives = 188/469 (40%), Gaps = 29/469 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + +RK ++  +  +FL ++   F++ G+        G +TV +VG  K+    +  + 
Sbjct: 1   MFDFVRKHTKVLMFLMFL-LIIPAFVLVGVDGYKSMAGGGATVATVGNAKITQEEWDFAH 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           K E+  +   +   ++ +   S       L+ LV    + + ++   +   + R+  E+ 
Sbjct: 60  KNEVDRLRASVP-NLDPKLLDSAEARYTTLERLVREKVMAEAVQTAHMTTSNARLARELQ 118

Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++P        D     + +    A +G+  + +     + LS   V     G       
Sbjct: 119 QNPTIASLRKPDGTLDMERYRQLAASQGLTPEGFEARVRRDLSLMQVESAVTGTAFSPKA 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L D A   +FE R V  +  +     +  +PS+A +  +F+     +++ E   + Y++ 
Sbjct: 179 LSDLALNAFFERREVQVLRFSPADYASKINPSDADIDAYFQANSALFQSTETANVEYVVL 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADE 285
           D+   +K + ++  +L++ +E+N  +  + E R    ++    K+            A  
Sbjct: 239 DLEAVKKTVSVNEADLKSYFEQNASRLSAKEERRASHILINAPKDMPAADRAKAKERATA 298

Query: 286 AFQSLKKGKK-FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               ++K    F ++A++  + +        L  F +  +      D+ FS+ KKG+ + 
Sbjct: 299 LLAQVRKAPDSFAEVAKKNSQDVGSAPRGGDLDFFGRGAMVKP-FEDAAFSM-KKGEISD 356

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399
           ++   FG+ I  ++++K +   +F+E +  +  ++R   A  K  E  +     +     
Sbjct: 357 LVESDFGFHIIKLADVKGAKQPTFEEARVSLEPELRAQSAQRKFAEVAEAFTNGVYEQSD 416

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
           S+  ++ R K+       V           +A      +LL  +F  D 
Sbjct: 417 SLKPVAERLKLEVKTATNVQRQPLPGAAGPLA----NPKLLEAIFSTDS 461


>gi|153872856|ref|ZP_02001627.1| peptidyl-prolyl cis-trans isomerase D [Beggiatoa sp. PS]
 gi|152070679|gb|EDN68374.1| peptidyl-prolyl cis-trans isomerase D [Beggiatoa sp. PS]
          Length = 576

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 90/572 (15%), Positives = 209/572 (36%), Gaps = 43/572 (7%)

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
             +     ++L +++    L Q   + GL      +   I     F   D KFS   +  
Sbjct: 1   MDTPEFRHRVLQDMIEEELLVQSAINNGLRISDAFLATRIQSFQAFQD-DGKFSPSQYEQ 59

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L  +G+    +     + L    +    +     ++    Q  RF  + RS+ Y+++  
Sbjct: 60  VLRYQGMTPTAFEWEIRRSLLTDQIREGVLRSALVTDYDEQQRTRFDEQQRSISYLIIPK 119

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
                    ++A + ++++++ + Y+  E  RI Y+     +      +S + L+  Y++
Sbjct: 120 TRFDKAVTITDADIEKYYQEHLERYKTVEKVRIEYVELSKSDLANAEPLSEEMLKERYQE 179

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAEEQGKSL 307
            K  + +P       ++    KEA             +    +K G+   +LA++    +
Sbjct: 180 RKASFTTPGRWNARHILIEVGKEASVSDKEEAKQKVQDILAKIKAGESVEKLAKQFSDDI 239

Query: 308 S----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                   LG F    +      +++ S+ K GD +  I   FG+ I  + +++P   + 
Sbjct: 240 GSKNQGGDLGWFDSGTMVKP-FEEALKSM-KVGDISEPIKTRFGFHIIELVDVQPEKVLP 297

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSIDLPLVDFAG 422
           F++V++ +   ++  +A        +++         +++ +     +        D  G
Sbjct: 298 FEQVREQLEADLKNEQADSAFYGQVEQMANLAFENPDNLETLRGTLNLERKTTDWFDKTG 357

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIKESIPARDRKLE 480
              K +   +I    +++   F  +          + + +   + +++KE  PA+ R ++
Sbjct: 358 GSQKNEP-DSILSHPKVIEIAFSDEVLKERFNSEPIEIAEQQMVVLRLKEHQPAKARPID 416

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           +V  D+K   K  +T  E     + L+ +  ++G    ++ K    +  T   + R DNE
Sbjct: 417 DVKDDIKSALKQERTQAETEKLGSNLLDQIKQKGDP--NVVKEQALNWSTIQWVTRKDNE 474

Query: 541 NKFFGYDGISQVFSG--PVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKD-------- 588
            +      + Q F    P E    +     N   Y +  V + K G V+           
Sbjct: 475 PQ---RVIVEQAFKMGQPAENNAIYQGITLNNGDYALIAVLDIKDGVVETAKADTEVEKT 531

Query: 589 ---KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
              +      Q   +   +  ++ LK    + 
Sbjct: 532 PDTEQQDKQQQAFGETEFNYFVSGLKVGAEIK 563


>gi|94263261|ref|ZP_01287077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
           proteobacterium MLMS-1]
 gi|93456344|gb|EAT06468.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
           proteobacterium MLMS-1]
          Length = 630

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 106/645 (16%), Positives = 248/645 (38%), Gaps = 34/645 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML ++R+ +R+ +  + + ++ + F+ W     +    G  TV  V  + +    F   +
Sbjct: 1   MLALLRRKARSPIVLVAIAIIILVFIFW--LPQMGGDGGPGTVAVVNEEPLSLREFQRRY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            + L     + G V+  +   ++G+ +++L  L+    L Q  +  GL A    V  EI 
Sbjct: 59  NETLSQYRDEFG-VIPPDLLEALGIREQVLQQLIQEQLLLQSAKKTGLPATSSEVQREIQ 117

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F  +  +F  + +   L    ++ KE+       L R  ++   VG  + S+  + 
Sbjct: 118 SMGEFSDEAGRFDLERYRQTLTAARLSVKEFEQGIRTDLLRRKIIDHLVGFAQVSDDEVR 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q   +  +   + Y+ L        + PS   L  +F++   +Y +P   R+ Y+LF   
Sbjct: 178 QRFHYDHDQVRLAYLRLAAADFKPASTPSAEELEAFFQENSQDYLSPPMVRLDYLLFTPE 237

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288
            + + I    +E+ A YE N+E++  PE R    ++  +            +++     +
Sbjct: 238 REPEAIA--EEEIVAYYEANREEFSLPEQRRARHILIRSADNDSPELRASRKEQLRAVLE 295

Query: 289 SLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             + G  F +L     +    +   LG F ++ + +  + ++ F+L + G+ + ++   F
Sbjct: 296 RARAGHDFAELVALYSEDARAAGGDLGFFQRDEMVEP-IEEAAFAL-EPGEISDIVETRF 353

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ I  +  ++P+  +   EV+ +IA++++  +  ++         E +    S++  + 
Sbjct: 354 GFHILKLDELQPARQLELAEVRDEIADRLQDEEIQDESFARAGEAYELVLSEGSLERGAA 413

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
                      V   G   +    A +     LL   F           +A  D  Y  +
Sbjct: 414 AAD------EQVHTTGLFARQNPPARLAPYAGLLETAFDL-GEGELSSIIAAGDDGYAIL 466

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
            +++    +   L EV  +V+ DW   +  +     A++  L    +G+    I  +   
Sbjct: 467 HVRQRQEPQVPSLAEVKEEVQADWLASQARQAARRAADE-ALTALHDGRELAAIAADHAV 525

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEM-VKCFPIENGLSYVVFKVTNSKVGPVQ 585
            L  +   +R            I        E  +    +  G  + V ++   + G  +
Sbjct: 526 ELQESPWFSRATATAVDLPEALIETGLGLRGEEPLPAEVVAAGDHFYVPRLLERRPGDEE 585

Query: 586 E----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                 D     L +   + ++++ + +   +  + +    ++R+
Sbjct: 586 LFQRWADPIRRELLRAKQEAVIETWVGHQLKEADIRLTPGALERF 630


>gi|294083766|ref|YP_003550523.1| Parvulin-like peptidyl-prolyl isomerase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663338|gb|ADE38439.1| Parvulin-like peptidyl-prolyl isomerase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 620

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 125/639 (19%), Positives = 262/639 (41%), Gaps = 28/639 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-VSGSSTVVSVGRQKVPFSSFINS 59
           ML+ +R  +++ + K FLV L   F +WG+ D     + GS   VS   + +        
Sbjct: 1   MLQAMRSGAKSPIMKAFLVFLAGGFALWGVGDITTGLIGGSDKAVSASEESLSPREVALE 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +++             ++  A   GL  +I+ +L      +     +GL          +
Sbjct: 61  FERARRNYM----PNSSTGEALQTGLLSEIVGSLSRAVIFNAENNTLGLTVTRAMQRDAV 116

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
           A    F  +   FS   F+  LA  GI+E EY+      L R  +    V G+  +    
Sbjct: 117 ANETNFQDEMGSFSEGRFMQTLASAGISEAEYLGRVDSALKRDQLTRALVAGVVSNKAAD 176

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
               ++  + R V            I  PS+A L  +F + K +Y AP  +         
Sbjct: 177 TLLTKYELQQRVVKMQSF-AVDADNIGTPSDADLDTYFSENKSSYDAPTVRSARVGFISA 235

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
              E  ++IS D ++  +    +++ +PE R V Q+VF + K+A+EA   + +G+ F  +
Sbjct: 236 TLIEADVDISEDMIKDAFGTRIDEFSTPETRVVRQMVFEDAKKANEARARVDQGEDFNAV 295

Query: 300 AEEQGK-SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           A +    + +D+ LG+ +++ + D ++AD++F  A     T  +   FG  I  V +I  
Sbjct: 296 AADMLNWTDTDVMLGTVTRDGL-DGAIADAVFD-ASVNVVTGPVETLFGQHILIVDDITE 353

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
               + ++V+ +I   +R  +A + + E    LE+ +A G S+DE   +     + +  +
Sbjct: 354 GGNATLEDVRDEITRTLRSEEAIDLLYERANLLEDEIASGASLDEALGKAGGKIVTINDI 413

Query: 419 DFAGKDVKGKEVAA---IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
           D  G D+ G+ +     I  +  ++  ++  D         A  D  +  V +     AR
Sbjct: 414 DRNGLDIDGQPMVDDSEIAQESAIIEAIWTNDIGTLSVLQEASADI-FFMVDVTTETEAR 472

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
            R L+EV     KDWK V+  +   + A+  +   +    +F +I  +        ++  
Sbjct: 473 PRTLDEVKQRAIKDWKLVQAIKSARAAADAAIANPA----SFDNIAAS--------SKFR 520

Query: 536 RMD-NENKFFGYDGISQVFSGPVEMVKCF-PIENGLSYVVFKVTNSKVGPVQEKDKFIS- 592
           R     +        +  F+               ++ +  ++  ++   + + +K ++ 
Sbjct: 521 RNGLGLDHEAARLIANTAFAQANGDFDVVETGTEAIAVMTSEIIEAEQSEIDDTNKMVAD 580

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
            +   + +D++  +   L  ++ + ++   +++ L G +
Sbjct: 581 IMKNAITEDVISFMAIKLSQEHDLQINIEPVRQLLVGSQ 619


>gi|148555266|ref|YP_001262848.1| hypothetical protein Swit_2351 [Sphingomonas wittichii RW1]
 gi|148500456|gb|ABQ68710.1| hypothetical protein Swit_2351 [Sphingomonas wittichii RW1]
          Length = 676

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 114/638 (17%), Positives = 228/638 (35%), Gaps = 14/638 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS--DALFSVSGSSTVVSVGRQKVPFSSFIN 58
           M+   R+A  +W+    L ++ V F+I G+    ++   S  +TV  +   KV  +  + 
Sbjct: 32  MISFFRRALSSWIILGILALVLVAFIITGVESPGSIGGTSNGATVAKIDGGKVSTNDLLR 91

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
             + +   + ++   + +     + G  + + + L+    +D + ++ G       +  +
Sbjct: 92  RVQNQFDALRRERPELDHKSFLAAGGF-EGVTNGLIDARAIDAWGKEQGFAIGKRLIDAQ 150

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           IA    F G    F   V  +RLA+  I+E+E        L R  ++   V        L
Sbjct: 151 IAGMDAFRGITGAFDETVMRNRLAQARISERELRADIAGELMRNQILTPAVALAPTPAKL 210

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                    E R     ++          P+ A +   ++     +  PE + + Y LF 
Sbjct: 211 ARPYATLLLEERIGQVGIIPLAAFIDPRQPTEAEIAAAYKANIAAFTRPEARVLRYALFG 270

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
             +       +  E+   Y +N + Y + E+R + Q+V PN+  A     + + G+    
Sbjct: 271 AEQVAAAAAPTEAEIATYYRENADSYAAREMRGLTQVVTPNETLARSIAAAARGGQTLAA 330

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
            A + G   S ++  S +       +        A  G       GSFG+ +  V  +  
Sbjct: 331 AAAKAGLEASTLTGQSKAAYGGSAGAAVADQAFAAAAGSVAGPAKGSFGWYVVKVDAVTA 390

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
           +      E K +IA  +   KA E + E   ++E+ +A G S  E++   K+  ++ P +
Sbjct: 391 TPGRPLAEAKPEIAALLTRQKAQEALSELAGKVEDAIADGASFAEVAANNKLTVVETPAL 450

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G+ +   +  A P    LL   F             + D  Y  + + + IP     
Sbjct: 451 LAGGQPIDRPDWKAPPELGALLKSGFAGSPDDRPTVETVVADQQYALLGVAKVIPPTPLP 510

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
           L +V   V +D  T + AE   +  +++V    + G        + G +L          
Sbjct: 511 LAQVRPMVIRDIVTKRAAERAKAIGDKMVAAIDR-GVPLAKAIADSGVALPPARPARARQ 569

Query: 539 ------NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
                  ++     + +  +F+      K  P   G +  V  +     G + +    + 
Sbjct: 570 IDIARAQQSGAQIPEPVRALFALQKGKAKLVPSAQGEALFVTVLDQVVPGDLAKAPGLVG 629

Query: 593 Y----LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                L +    +L D  I  +     V  +   I   
Sbjct: 630 ATQEELARASKAELGDQFIRAVSLDVDVKRYPEAIAAA 667


>gi|114569954|ref|YP_756634.1| hypothetical protein Mmar10_1404 [Maricaulis maris MCS10]
 gi|114340416|gb|ABI65696.1| hypothetical protein Mmar10_1404 [Maricaulis maris MCS10]
          Length = 645

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 111/632 (17%), Positives = 249/632 (39%), Gaps = 24/632 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML   R  +++ +A I +V+L + F I               VV VG +++       ++
Sbjct: 1   MLSNFRAFAQSPIALIIIVLLVLSFAIAMPGAGGIFTGSGDAVVVVGPERISQREMATAF 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +E+  + ++    V  E AR  G+  ++L   ++ AT+     D+GL      +  E+A
Sbjct: 61  NREVARLQEQNPD-VTREMAREEGIAYQVLQQQITMATMAARARDLGLAISDVAIVSEVA 119

Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
             P F      +F  D   + L R G+ E ++       L R+ ++    G     + + 
Sbjct: 120 DVPAFQNPITERFDRDTMAAALQRSGVTEDQFARDIEGDLLRSQLMATLAGFSDVPDQIA 179

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN-----YRAPEYKRISY 234
                   E R +  +V++      I DP++  L  + ++         +  PEY+ I+ 
Sbjct: 180 ATRYLVAEEQRRMTGLVIDASTADEIEDPTDETLQTFIDETLGANGEPVFTRPEYRAITL 239

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           + F + +  + + +    L+  Y+      +  +P  R+  QL   +Q  AD+A   L  
Sbjct: 240 VRFQLDDFIRDVAVDEATLREVYDYEIATNQIGTPAYRSFTQLTVSDQAGADDAASRLAA 299

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           G+    +A E G     +      +  IPD  L +++F+++  G+   V  G FG+    
Sbjct: 300 GEAPSAVAAELGLDTPLVQT-DVQQFEIPDEGLGETVFAMS-AGEARAV-EGRFGWSAVI 356

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           ++  + +   +F+E +  +       +A++ + +     E   A G S++  +       
Sbjct: 357 ITGAEEATQPAFEEERPRLQADAARAQATDDMYDAISAFETVRATGASLEVAAEESGTPL 416

Query: 413 IDLP--LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                  V+   +D++           ++L   F   +  + +   +  +  +  +++ E
Sbjct: 417 EIFQPLAVNSIDEDLQFDGERYQALAPEILPAAFDHIEGFATN-LESYNETDFYTLRVDE 475

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
            I +R  +LEE+    +  W++++   ++ ++A   + +  + G +   +   +G    T
Sbjct: 476 IIQSRPFELEEIREQAESRWRSIQVDTQLQARAEDALAQL-EAGSDMEIVSLMVGGRTET 534

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK- 589
           +  + R       F  + ++  F+      +   +  G  Y+V  V       +      
Sbjct: 535 ST-LKR-GQTAGGFDRNAVALAFTTDPGAYEMIQVGEG-QYLVLTVNEIIPADIAAAPAA 591

Query: 590 ----FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                 + LT  +  D++ +   YL   Y +T
Sbjct: 592 DLAGIETSLTTELGNDIVSATREYLIRDYGIT 623


>gi|326387876|ref|ZP_08209482.1| hypothetical protein Y88_0791 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207922|gb|EGD58733.1| hypothetical protein Y88_0791 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 645

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 117/645 (18%), Positives = 240/645 (37%), Gaps = 21/645 (3%)

Query: 1   MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSS 55
           ML   R   ++     +  +FLV++ + F    +S        G   V +VG   +    
Sbjct: 1   MLGFFRAIIKSRFGAVLGLVFLVLIVLAFAGADVSGLRTGNLFGGDDVATVGHTGISSRE 60

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
              + +       Q+   +   +   S    +++L  L+  A + ++ +  G+      +
Sbjct: 61  LDKTVRAAFDGERQRTPTLTMKDFVTSQNALEEVLSGLIDRAAVQEWGQKNGIGVSDRLI 120

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EIA+ P F G D KFS  V+   +A+ G+ +K+  +   K L    ++     G    
Sbjct: 121 DSEIAKLPAFQGPDGKFSQQVYNQLIAQRGLTDKQVREDIAKGLMGKLIMAGASEGAAMP 180

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           N +  +      E RS   ++L ++     A  ++  +  +++     Y+ PE + I Y+
Sbjct: 181 NGVAQRYAELLKEKRSGGILMLPSQAFAPKAPATDQQVADFYKANIVRYQRPERRTIRYV 240

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           L D    +     S+ ++Q  Y+ N   Y   E R++ Q++ P+Q  A      L  GK 
Sbjct: 241 LVDEAAIKNLGAPSDADIQKRYQANAALYAPNETRSITQVILPSQSAAQAFAADLAGGKT 300

Query: 296 FI---QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                         ++D +      +     ++AD++FS A++G       G+ G+ +A 
Sbjct: 301 IEAAAAAKGLAPAKIADRTHDQLVSDT--SKAVADAVFS-AQQGKLITPTKGALGWSVAR 357

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V  IK +   +  + + +I   +   +    + +   R+ E    GTS+ +I +   +  
Sbjct: 358 VDAIKKNPGKTLDQARAEIVLALTAERHKAAMTDLAARIGEQAENGTSLTDIVKAYGLTI 417

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471
                V   G +         P  + L+   F  +    +     LP+G    V  +   
Sbjct: 418 QTTDPVQADGSNPAKPGDKLSPDVQGLVQAAFAMEHE-GQPQVAGLPNGLRFAVFDVGAI 476

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL--L 529
            PA    L E+   V  DW   + A   ++ A++++   +K+        K+LG  L  +
Sbjct: 477 TPAAPAALAEIKAQVAADWARAQGAAAAAAAADKVLAAVAKK-TPLDVAVKSLGLPLPPI 535

Query: 530 TTNQINRMDNENKFFGYDGISQV-FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
               + R               + FS      K     N   ++V  + N + G V   D
Sbjct: 536 DKVAMTREQLTQMQPRVPAPYALMFSMTKGSAKKLAAPNQAGWLVIALDNVENGTVAPND 595

Query: 589 KFISYLTQMMNKDLLDSVIAYLKS----QYSVTVHDNLIQRYLDG 629
             I+     + +         L++    +     ++  ++   + 
Sbjct: 596 PLIAQAAGQLGQVAGREYADELRTAITHEIGSKRNEATLRTVREA 640


>gi|296112838|ref|YP_003626776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis RH4]
 gi|295920532|gb|ADG60883.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis RH4]
 gi|326561505|gb|EGE11849.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 46P47B1]
 gi|326567538|gb|EGE17653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis BC1]
 gi|326571415|gb|EGE21430.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis BC7]
          Length = 617

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/635 (16%), Positives = 218/635 (34%), Gaps = 34/635 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E +R   ++W  ++ LV   +P    G+          + ++ VG Q V  ++F     
Sbjct: 1   MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            E   + ++    V++       L + IL  L   A L+     +G+      +   +  
Sbjct: 61  AERNALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQH 117

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
             +FH  + +FS+D F + L + G+ +          LS   ++   VG     N  + +
Sbjct: 118 YEVFHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSK 176

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R V     + +        S+A +  +F++++D    P    +SYI  D + 
Sbjct: 177 LIDLQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNV 236

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQ 298
                  +  E+ A+Y     +    + R + Q++         A +    L  G+ F  
Sbjct: 237 LSVG-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEA 295

Query: 299 LAEEQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+      S  +   +GSF+     + +   +   S    G  +  +   FGY I  V+
Sbjct: 296 LAKAHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT 355

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
            +  + T +   ++  + ++    K  +   +   ++      G  + +I++   +    
Sbjct: 356 KV-SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQ 414

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           +                  P      F  F   D     +         +WVQ       
Sbjct: 415 IIAYPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYEAE 468

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           R    +E    +K+     K  E   + A ++  E    G           A + T+  I
Sbjct: 469 RPLTFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANI 519

Query: 535 NRMDNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKD 588
                 N       ++ +F   S     V     E G S +V  V N          ++ 
Sbjct: 520 GMTTRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRL 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           + ++ +   +  D L+  + YL+    + ++ + +
Sbjct: 580 RAVAVIRDNVGADQLEDYVHYLRESSELVINQDAL 614


>gi|326576612|gb|EGE26519.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 101P30B1]
          Length = 617

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/635 (16%), Positives = 218/635 (34%), Gaps = 34/635 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E +R   ++W  ++ LV   +P    G+          + ++ VG Q V  ++F     
Sbjct: 1   MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            E   + ++    V++       L + IL  L   A L+     +G+      +   +  
Sbjct: 61  AERNALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQH 117

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
             +FH  + +FS+D F + L + G+ +          LS   ++   VG     N  + +
Sbjct: 118 YEVFHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSK 176

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R V     + +        S+A +  +F++++D    P    +SYI  D + 
Sbjct: 177 LIDLQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNV 236

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQ 298
                  +  E+ A+Y     +    + R + Q++         A +    L  G+ F  
Sbjct: 237 LSVG-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEA 295

Query: 299 LAEEQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+      S  +   +GSF+     + +   +   S    G  +  +   FGY I  V+
Sbjct: 296 LAKAHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT 355

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
            +  + T +   ++  + ++    K  +   +   ++      G  + +I++   +    
Sbjct: 356 KV-SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQ 414

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           +                  P      F  F   D     +         +WVQ       
Sbjct: 415 IIAYPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYEAE 468

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           R    +E    +K+     K  E   + A ++  E    G           A + T+  I
Sbjct: 469 RPLTFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMNTSANI 519

Query: 535 NRMDNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKD 588
                 N       ++ +F   S     V     E G S +V  V N          ++ 
Sbjct: 520 GMTTRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRL 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           + ++ +   +  D L+  + YL+    + ++ + +
Sbjct: 580 RAVAVIRDNVGADQLEDYVHYLRESSELVINQDAL 614


>gi|326566698|gb|EGE16837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 103P14B1]
          Length = 617

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/635 (16%), Positives = 217/635 (34%), Gaps = 34/635 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E +R   ++W  ++ LV   +P    G+          + ++ VG Q V  ++F     
Sbjct: 1   MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            E   + ++    V++       L + IL  L   A L+     +G+      +   +  
Sbjct: 61  AERNALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQH 117

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
             +FH  + +FS+D F + L + G+ +          LS   ++   VG     N  + +
Sbjct: 118 YEVFHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSK 176

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R V     + +        S+A +  +F++++D    P    +SYI  D + 
Sbjct: 177 LIDLQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNV 236

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQ 298
                  +  E+ A+Y     +    + R + Q++         A +    L  G+ F  
Sbjct: 237 LSVG-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEA 295

Query: 299 LAEEQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+      S  +   +GSF+     + +   +   S    G  +  +   FGY I  V+
Sbjct: 296 LAKAHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT 355

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
            +  + T +   ++  + ++    K  +   +   ++      G  + +I++   +    
Sbjct: 356 KV-SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQ 414

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           +                  P      F  F   D     +         +WVQ       
Sbjct: 415 IIAYPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYEAE 468

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           R    +E    +K+     K  E   + A ++  E    G           A + T+  I
Sbjct: 469 RPLTFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMNTSANI 519

Query: 535 NRMDNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKD 588
                 N       ++ +F   S     V     E G S +V  V N          ++ 
Sbjct: 520 GMTTRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRL 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
             ++ +   +  D L+  + YL+    + ++ + +
Sbjct: 580 HAVAVIRDNVGADQLEDYVHYLRESSELVINQDAL 614


>gi|326577521|gb|EGE27401.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis O35E]
          Length = 617

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 104/635 (16%), Positives = 217/635 (34%), Gaps = 34/635 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E +R   ++W  ++ LV   +P    G+          + ++ VG Q V  ++F     
Sbjct: 1   MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            E   + ++    V++       L + IL  L   A L+     +G+      +   +  
Sbjct: 61  AERNALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQH 117

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
             +FH  + +FS+D F + L + G+ +          LS   ++   VG     N  + +
Sbjct: 118 YEVFHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSK 176

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E R V     + +        S+A +  +F++++D    P    +SYI  D + 
Sbjct: 177 LIDLQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNV 236

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQ 298
                  +  E+ A+Y     +    + R + Q++         A +    L  G+ F  
Sbjct: 237 LSVG-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEA 295

Query: 299 LAEEQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+      S  +   +GSF+     + +   +   S    G  +  +   FGY I  V+
Sbjct: 296 LAKAHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT 355

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
               + T +   ++  + ++    K  +   +   ++      G  + +I++   +    
Sbjct: 356 KA-SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQ 414

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           +                  P      F  F   D     +         +WVQ       
Sbjct: 415 IIAYPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYEAE 468

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           R    +E    +K+     K  E   + A ++  E    G           A + T+  I
Sbjct: 469 RPLTFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANI 519

Query: 535 NRMDNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKD 588
                 N       ++ +F   S     V     E G S +V  V N          ++ 
Sbjct: 520 GMTTRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRL 579

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           + ++ +   +  D L+  + YL+    + ++ + +
Sbjct: 580 RAVAVIRDNVGADQLEDYVHYLRESSELVINQDAL 614


>gi|256823166|ref|YP_003147129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
           DSM 16069]
 gi|256796705|gb|ACV27361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
           DSM 16069]
          Length = 624

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 100/622 (16%), Positives = 225/622 (36%), Gaps = 47/622 (7%)

Query: 29  GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88
           G             V  V   ++  +            +  +      +E ++ + L ++
Sbjct: 16  GYFTGTLFSGNPDKVAEVEGAEITNAQIQQRVDNVRRQMGDQFEQQYATEASQQL-LRQQ 74

Query: 89  ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
           I + L+S   L   +   GL A   ++       P F      +S D     LA++G +E
Sbjct: 75  IKEQLISEQVLRANLTKAGLTASEQQIKAWAREFPAFQ-IGGVYSADQAKMILAQQGWSE 133

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
           + +     + +++  +           N  ++   +   + R V Y+ +         D 
Sbjct: 134 ERFRQFARQQIAQEQLEQGVGASNFALNFEVEAYYQLQEQTRDVGYVRVAREAFSDSVDV 193

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK--IEISNDELQAEYEKNKEKYFS 266
           S++ + +++E+ +  +  PE   + Y+   + E  +    ++SN+++ + YE+NK  Y  
Sbjct: 194 SDSEVKEYYEQNQTQFEQPEMVNLRYVRLSLTELSQDLMADVSNEQITSFYEQNKANYQD 253

Query: 267 PEIRTVEQLVFPN-----QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS------- 314
           P    V  ++  +     Q +A      +++G  F +LA+E          G        
Sbjct: 254 PAEILVAHILIDSSVEDAQSKAQSLLSDIEQGADFAELAKEHSSDTFSGENGGQLDWVDA 313

Query: 315 --------FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
                       ++P+     +  +L   GD T ++   FGY I  + + K +     + 
Sbjct: 314 VPTSDDNPTGTGWVPE--FEAAALALENVGDVTDLVESQFGYHIIKLVDKKAADVSPLEN 371

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIVSIDLPLVDFAGKDV 425
           V+ +I  Q+ + +A +   E    L E L   G  +++ + + ++   ++       KD 
Sbjct: 372 VQDEIRQQLALEQAQKIFFEKQAILNEKLFEYGDDLEKFAEQVEL---EIQETGLFSKD- 427

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
               +A  P   +  F     +     D  + L     +++ +K+  P++ + LEEV   
Sbjct: 428 SATGIADNPVFLEKAFSASILESTEVSD-MIELSQDDIVYLTVKDYQPSQVQPLEEVKQI 486

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
           V    K  K AE   + A Q++ E  + G +   +      S   +  +           
Sbjct: 487 VVDTLKEEKIAEATKAYAEQVLAEL-EAGGSAEQLLATKELSWTESEALK---ARGSSVQ 542

Query: 546 YDGISQVFSGPVEMVKCF-----PIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLT 595
           +D  + +F+              P+ NG  Y V +V   +           + +    L 
Sbjct: 543 FDLSNAIFALQPPKEGEVIRAVEPLFNGD-YAVIEVQAVQYPDPSTMDEATRKQIAQRLA 601

Query: 596 QMMNKDLLDSVIAYLKSQYSVT 617
            +  +  L  ++   + +  ++
Sbjct: 602 NVNAQAELQGLMKTFREKSEIS 623


>gi|326565373|gb|EGE15551.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 12P80B1]
          Length = 614

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/632 (16%), Positives = 216/632 (34%), Gaps = 34/632 (5%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           +R   ++W  ++ LV   +P    G+          + ++ VG Q V  ++F      E 
Sbjct: 1   MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHTIQPNELIKVGNQVVDVATFQAEVNAER 60

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             + ++    V++       L + IL  L   A L+     +G+      +   +    +
Sbjct: 61  NALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 117

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           FH  + +FS+D F + L + G+ +          LS   ++   VG     N  + +   
Sbjct: 118 FHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLID 176

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
              E R V     + +        S+A +  +F++++D    P    +SYI  D +    
Sbjct: 177 LQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSV 236

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQLAE 301
               +  E+ A+Y     +    + R + Q++         A +    L  G+ F  LA+
Sbjct: 237 G-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAK 295

Query: 302 EQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                 S  +   +GSF+     + +   +   S    G  +  +   FGY I  V+ + 
Sbjct: 296 AHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVTKV- 354

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
            + T +   ++  + ++    K  +   +   ++      G  + +I++   +    +  
Sbjct: 355 SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQIIA 414

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
                           P      F  F   D     +         +WVQ       R  
Sbjct: 415 YPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYEAERPL 468

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             +E    +K+     K  E   + A ++  E    G           A + T+  I   
Sbjct: 469 TFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANIGMT 519

Query: 538 DNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFI 591
              N       ++ +F   S     V     E G S +V  V N          ++ + +
Sbjct: 520 TRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRLRAV 579

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           + +   +  D L+  + YL+    + ++ + +
Sbjct: 580 AVIRDNVGADQLEDYVHYLRESSELVINQDAL 611


>gi|326561079|gb|EGE11444.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 7169]
          Length = 614

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/632 (16%), Positives = 217/632 (34%), Gaps = 34/632 (5%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           +R   ++W  ++ LV   +P    G+          + ++ VG Q V  ++F      E 
Sbjct: 1   MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVNAER 60

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             + ++    V++       L + IL  L   A L+     +G+      +   +    +
Sbjct: 61  NALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 117

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           FH  + +FS+D F + L + G+ +          LS   ++   VG     N  + +   
Sbjct: 118 FHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLID 176

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
              E R V     + +        S+A +  +F++++D    P    +SYI  D +    
Sbjct: 177 LQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSV 236

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQLAE 301
               +  E+ A+Y     +    + R + Q++         A +    L  G+ F  LA+
Sbjct: 237 G-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAK 295

Query: 302 EQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                 S  +   +GSF+     + + + +   S    G  +  +   FGY I  V+ + 
Sbjct: 296 AHSDDPSGSNGGVIGSFNPSVFGEYAASVEQALSGLSVGQISQPVQTGFGYHIFKVTKV- 354

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
            + T +   ++  + ++    K  +   +   ++      G  + +I++   +    +  
Sbjct: 355 SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQIIA 414

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
                           P      F  F   D     +         +WVQ       R  
Sbjct: 415 YPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYKAERPL 468

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             +E    +K+     K  E   + A ++  E    G           A + T+  I   
Sbjct: 469 TFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANIGMT 519

Query: 538 DNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFI 591
              N       ++ +F   S     V     E G S +V  V N          ++ + +
Sbjct: 520 TRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRLRAV 579

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           + +   +  D L+  + YL+    + ++ + +
Sbjct: 580 AVIRDNVGADQLEDYVHYLRESSELVINQDAL 611


>gi|326575303|gb|EGE25231.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis CO72]
          Length = 614

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/632 (16%), Positives = 216/632 (34%), Gaps = 34/632 (5%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           +R   ++W  ++ LV   +P    G+          + ++ VG Q V  ++F      E 
Sbjct: 1   MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVNAER 60

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             + ++    V++       L + IL  L   A L+     +G+      +   +    +
Sbjct: 61  NALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 117

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           FH  + +FS+D F + L + G+ +          LS   ++   VG     N  + +   
Sbjct: 118 FHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLID 176

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
              E R V     + +        S+A +  +F++++D    P    +SYI  D +    
Sbjct: 177 LQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSV 236

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQLAE 301
               +  E+ A+Y     +    + R + Q++         A +    L  G+ F  LA+
Sbjct: 237 G-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAK 295

Query: 302 EQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                 S  +   +GSF+     + +   +   S    G  +  +   FGY I  V+ + 
Sbjct: 296 AHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVTKV- 354

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
            + T +   ++  + ++    K  +   +   ++      G  + +I++   +    +  
Sbjct: 355 SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQIIA 414

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
                           P      F  F   D     +         +WVQ       R  
Sbjct: 415 YPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYEAERPL 468

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             +E    +K+     K  E   + A ++  E    G           A + T+  I   
Sbjct: 469 TFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANIGMT 519

Query: 538 DNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFI 591
              N       ++ +F   S     V     E G S +V  V N          ++ + +
Sbjct: 520 TRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRLRAV 579

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           + +   +  D L+  + YL+    + ++ + +
Sbjct: 580 AVIRDNVGADQLEDYVHYLRESSELVINQDAL 611


>gi|326569386|gb|EGE19446.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis BC8]
          Length = 614

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/632 (16%), Positives = 215/632 (34%), Gaps = 34/632 (5%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           +R   ++W  ++ LV   +P    G+          + ++ VG Q V  ++F      E 
Sbjct: 1   MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVNAER 60

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             + ++    V++       L + IL  L   A L+     +G+      +   +    +
Sbjct: 61  NALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 117

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           FH  + +FS+D F + L + G+ +          LS   ++   VG     N  + +   
Sbjct: 118 FHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLID 176

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
              E R V     + +        S+A +  +F++++D    P    +SYI  D +    
Sbjct: 177 LQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSV 236

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQLAE 301
               +  E+ A+Y     +    + R + Q++         A +    L  G+ F  LA+
Sbjct: 237 G-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAK 295

Query: 302 EQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                 S  +   +GSF+     + +   +   S    G  +  +   FGY I  V+ + 
Sbjct: 296 AHSDDPSGSNGGVIGSFNPSVFGEYAAGVERALSGLSVGQISQPVQTGFGYHIFKVTKV- 354

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
            + T +   ++  + ++    K  +   +   ++      G  + +I++   +    +  
Sbjct: 355 SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQIIA 414

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
                           P      F  F   D     +         +WVQ       R  
Sbjct: 415 YPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYEAERPL 468

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             +E    +K+     K  E   + A ++  E    G           A + T+  I   
Sbjct: 469 TFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANIGMT 519

Query: 538 DNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFI 591
              N       ++ +F   S     V     E G S +V  V N          ++   +
Sbjct: 520 TRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRLHAV 579

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           + +   +  D L+  + YL+    + ++ + +
Sbjct: 580 AVIRDNVGADQLEDYVHYLRESSELVINQDAL 611


>gi|254294057|ref|YP_003060080.1| hypothetical protein Hbal_1695 [Hirschia baltica ATCC 49814]
 gi|254042588|gb|ACT59383.1| hypothetical protein Hbal_1695 [Hirschia baltica ATCC 49814]
          Length = 634

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/633 (15%), Positives = 238/633 (37%), Gaps = 12/633 (1%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML I+R+  R+ +  + + +L V     GL D +FS S    ++S G + +      N  
Sbjct: 1   MLSIVRRMVRSKLMLVVIGLLIVGLAGMGLPD-MFSSSEPRGMISAGDRFIVKRDIDNRI 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
              L  + +  G  ++ + A   G+ ++IL ++ S   L  F +   + A    V   + 
Sbjct: 60  DTYLRSVRESEGRTISRQEAAKAGVIQQILQSVASETALLAFADKEKISASRYAVTDMVV 119

Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            +P F      +F    F      +G++ ++   +  +  +R  +      G+   + L 
Sbjct: 120 NAPRFKNAVTGEFDDASFKDFARLQGLSVRQLETNLKESFTREYIADAVSTGVNTPDALG 179

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                   E R   Y+ + N        P++  +  ++E+ K  +  P+ K +S +    
Sbjct: 180 KVWITSQSEQREFSYVKIPNDVSDEGILPTDEEVAAFYEENKTAFTQPKRKALSILSISP 239

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +    +EI    L+ EY+   +++ SPE R +++    +++   +A   +  G     +
Sbjct: 240 IDFIGSVEIPETVLKDEYDLRIKEFSSPESREIKEFSSSDRRLVQQAVDEIGAGGDVETV 299

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
                  +    +   +++ I D   A + F + +   F     G   +  A+V  I P 
Sbjct: 300 LSSLPDLVVTTKI--VTRDQISDEEYAKTAFIVPEDTHFGVFELGEGNWTGAYVDTIYPG 357

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
               F+ V   I  ++    A +  +   + + +F+  G +++E +    +  +    +D
Sbjct: 358 TPKPFETVSDQIFTELATVAAEQIFERKQEEMFDFVGGGFNLEEAADALGVPLMKYSAID 417

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
             G+  +G  +  I ++   +  +   D        +   +     +++         +L
Sbjct: 418 AQGRTEEGHLLGGIVFRPDAMETIQSLDFEDEMSEILDDANNGIYVIRLDTVEEGFIPEL 477

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS-LLTTNQINRMD 538
            +V +   + +K  + ++     AN L L+ +K   +  +    LG   +     +NR +
Sbjct: 478 ADVKSLATESYKIYQASQASEKLANDL-LDRAKALDDLSEAASELGLDYVKPEQNLNRRE 536

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS----YL 594
                       Q+             ++G S  V  + N      +  +   S     +
Sbjct: 537 APEGVT-RSMAYQLLGAKAGDYVVASEQDG-SKTVLHLENVSNLEPEMLETLASSGKRAV 594

Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           ++ +  D+  + +  +     + V++N +  Y+
Sbjct: 595 SESLEADIQRAFVEAVMEDAKIEVNNNAVSEYI 627


>gi|90021259|ref|YP_527086.1| peptidase M20D, amidohydrolase [Saccharophagus degradans 2-40]
 gi|89950859|gb|ABD80874.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus
           degradans 2-40]
          Length = 621

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 108/632 (17%), Positives = 227/632 (35%), Gaps = 27/632 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +R   +  V    +V++ +  ++ G+     +  G + V SVG + V       + 
Sbjct: 1   MLQNVRDNLKNKVVFGIVVLVMLIMVVGGVGSVNLNSIGGNDVASVGGEGVSAVELGRAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                 +    G    S+  +   L ++IL  LV    L    E+ G+ A    V   I 
Sbjct: 61  AMRKDQLLAN-GVDPTSDFVKEQNLRQQILPQLVRRKALLVTAEEAGVGAAVAEVEKTIL 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F     KF    +   +   G     Y     + +  +            S+  ++
Sbjct: 120 GQETFK-VGGKFDPQTYRRLIGNAGYLPATYKVAVAEDIILSHQSSGLADSAFVSDEEIN 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                  + RS   I +    V      +   +  +++  +  +  PE   + YI   V 
Sbjct: 179 ALVAILNQKRSFFGITIPKETVGDEVTVTPEQIEAYYQANQQEFSVPEKVSVDYIEISVA 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----DEAFQSLKKGKKF 296
           E  K I +   +++A+YE+ K  +       +  ++  +  E+    +E    L  G+ F
Sbjct: 239 EIAKTIAVDEADIKAQYEQEKADFVESSEYEIAHILIADGDESASKIEEVQTQLAAGEAF 298

Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LAE             SLG  +    P+     ++++L ++G+ +  +    G     
Sbjct: 299 ETLAETYSDDFGSRETGGSLGVLTTGIFPE-EFEQAVYAL-EEGEVSEPVTTDAGTHFIK 356

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V++ K     S++E K +I   ++  +A     + Y  LEE       +   + +  +  
Sbjct: 357 VTSKKVEALASYEERKPEIKKAIQNLRAESFYVDQYAELEELTFNAGDLTVAADQLGLTV 416

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIKE 470
              PL +    +   KEV       ++    F +D  LS      + + +   M ++ + 
Sbjct: 417 KQSPLFERNFGNGVAKEV-------KVRNAAFSEDVLLSGRNSPVIEISNSKAMVLRKRT 469

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P     LE V + +++  +      +++  A  +  E +  GK+ +++ ++LG  +  
Sbjct: 470 HNPEHIAALELVSSQIQQKLQAQAVQAKLAELAKNIQSEIA-AGKSPKEVAESLGYDIAE 528

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQ 585
              + RMD          + Q+ +G    V       G + V+  +T  + G       Q
Sbjct: 529 HELVKRMDVTADAQMLRAVFQMAAGSGATVFEDIEAQGGNRVLLGLTAVQPGKVEDMTEQ 588

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           E+    + L +      + +      S+  V 
Sbjct: 589 ERAALSTQLLRENANLEIAAYEEAAISKVKVK 620


>gi|329119300|ref|ZP_08247987.1| peptidyl-prolyl cis-trans isomerase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464647|gb|EGF10945.1| peptidyl-prolyl cis-trans isomerase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 603

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 106/630 (16%), Positives = 236/630 (37%), Gaps = 57/630 (9%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           AKI L ++ + F+ +G    +   +GS  +V VG +K+   +   + +++          
Sbjct: 12  AKIMLGLIALTFVGFGAGGII--ATGSDYIVKVGGEKISTQNVQEAQREQ---------- 59

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                   ++G  +  L  L   A L +  + +G+     ++   I   P FH ++ +FS
Sbjct: 60  --------NLGSGQDALAYLTERAYLAEGAKMMGIGVSEAQLKQVIVDDPGFHDENGRFS 111

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
              F   L + G+ E+ ++++     +  ++V +  GG   S+   +Q       +R + 
Sbjct: 112 EAKFRLFLQQGGLTEERFLENLRNSFALQNLVNLAGGGNIVSSAQAEQYAALMLADREIR 171

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
            I L+ +   A     +A L  +++K K  YR P+  +  YI        +  ++  DEL
Sbjct: 172 SIALDPKTFAAQIKADDAALKAYYDKDKSKYRLPQAVKYQYIELSPRTLAESQKVGEDEL 231

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQ-------KEADEAFQSLKKG-KKFIQLAEEQGK 305
           +  +E+ ++   +   R V  ++   +        EA++     K   +KF +LA +  +
Sbjct: 232 KKAFEEQQK--NAAPTREVAHIMLKTEGDAAKTKAEAEKILAEAKAAPEKFAELAAKYSQ 289

Query: 306 SLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                    SLG+  K+     +   ++ +L + GD   ++ G   + I  V N++    
Sbjct: 290 DAGTAQTGGSLGAVGKDSPLPEAFKTAVSALGQ-GDI-ALVEGEGAFHIVRVGNVRSG-- 345

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVSIDLPLVDF 420
           +SF+E K  +   ++  KA E V +    L +       S+   +    +   D      
Sbjct: 346 LSFEEAKPALEAALKEKKAREAVAKTRDTLRQIAFEKPESLQPAAEATGLTVRD----SA 401

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKL 479
                +  + + +P   + +  +FG D    K ++  +  G   WV +  ++        
Sbjct: 402 DWLSRENAQQSGLPA--EAVEALFGDDVFKKKHNSDLITAGDTSWVLRATDTRAESVPAF 459

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           E+    V+  +   + A+   ++  +L+ E  K G               +   +   D 
Sbjct: 460 EKAKEQVRAAYLNSEAAKAAEAQGKKLLAELQKGGTP--------QLEWSSVETLTAADA 511

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF---KVTNSKVGPVQEKDKFISYLTQ 596
             +       +   + P +    + +  GL   V    +         ++     + L +
Sbjct: 512 RLRLPPQALSALAKARPAQGKPAYVLLEGLPAPVLVEVRSIKVPQTSAEDGKLIRTRLAE 571

Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                + + + AYLK +         +   
Sbjct: 572 HTAIGMYNGLTAYLKGKIPAEQGKQKLDGA 601


>gi|332970309|gb|EGK09301.1| peptidyl-prolyl cis-trans isomerase [Kingella kingae ATCC 23330]
          Length = 610

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 108/630 (17%), Positives = 240/630 (38%), Gaps = 54/630 (8%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L  + + F+ +GL++   S    + +V VG Q +   +   + +      S++ G 
Sbjct: 12  AQLLLGAIGISFIGFGLANFDISTD-KNYIVRVGDQYITRDALEIAIRN-----SEQSGG 65

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
           V +           ++   L++ A L +  + +G+     ++   +  +P FH  + KF 
Sbjct: 66  VAD---------RNQVFQILLNRAYLQEGAKRLGIVVSDAQIKQAVVDTPEFHDANGKFD 116

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
              F + L +  ++E++++    + L+ T ++     G   S+    Q     F  R++ 
Sbjct: 117 PAKFQAFLQQTHLSEEQFMAQERERLTLTVLLNTLNQG-TVSDEQAMQFVNARFAERTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
             V N  +        +A L ++++  K  Y   +  +  YI+    +   K  +S+ E+
Sbjct: 176 TSVFNPENYAKDVKIDDASLQKFYDANKQTYALQQGVKYDYIVLSPKDLLDKQTVSDAEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-------------KKFIQLA 300
           QA  +    +  +   R +  ++    K ADEA +S  K              +KF  LA
Sbjct: 236 QAALKD--AQANAKPTRKIAHILIEAPKSADEATRSKAKAQAEQVAKEAQAAPEKFADLA 293

Query: 301 EEQ----GKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           ++     G + S   LG+F+K+  +P  +L ++ F L + G+ + V+   FGY I  V++
Sbjct: 294 KQYSQDAGSAQSGGELGNFAKDGSLPAPALEEAAFKLGE-GEVSGVVETDFGYHIVRVTD 352

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+     +  E    +  +++  KA +   +    L E +    S ++++       + +
Sbjct: 353 IQAIDVAALTE---RVRRELQEKKAQQAYNKMRDELSEAVF--ASNNDLAAAASKFGLTV 407

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
                        E+            +  +     +       DG+  +V+  E+  A 
Sbjct: 408 QKQGEWLTRANAAELKVPTAVVDA--ALSDEIFSKKQTSDAISADGATWFVRPTETRAAG 465

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
              L  V   V+ DW   ++       A + V    K        G+    + +   ++ 
Sbjct: 466 TEPLANVRERVQADWVRSESVRLAREAAQKAVEALRK--------GETPTLAWMPEQKVV 517

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVGPVQEKDKFISY 593
            M  +      D    + + P      F +    G+  +V   + + +   +  +   + 
Sbjct: 518 PMQVQALILPQDYAQFIAAQPKNGKPAFAVVERGGMVELVEVKSIATLNDPKILNAIKAE 577

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           + Q+    L ++ I  L++Q         I
Sbjct: 578 IAQVRGSALAEAYIDGLRAQVPTEQGSQKI 607


>gi|289811437|ref|ZP_06542066.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 408

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 181/421 (42%), Gaps = 23/421 (5%)

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
            ++++ K  +  PE  R+SYI  D      +  +S+ ++QA Y+++ +++  PE      
Sbjct: 1   SYYDQNKVRFMTPEQFRVSYIKLDAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSI 58

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIF 330
           +    + +A     +L KG+ F  LA+E+   +    +   +G   +       L ++  
Sbjct: 59  IQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATV-PELKNA-- 115

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            L +KG  + VI  S G+++A + +I+P+      EV+ DIA +++  KA +      ++
Sbjct: 116 GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQK 175

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDP 449
           + +  A     + ++  E++  +      +  +D   +E+   P  + +    + G++  
Sbjct: 176 VSD--AASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGT 233

Query: 450 LSKDHTVALPDGSY-MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
              +  +   DG     V++ E  P   + L EV   V    K  K  ++    A +L++
Sbjct: 234 PGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLV 293

Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
           E  K GK    + K  G S      ++R   +         +   S P +    + + N 
Sbjct: 294 EL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQD----PVSQAAFALSLPTKDKPVYGVAND 347

Query: 569 L--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +  + V+      K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q
Sbjct: 348 MQGNVVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQ 407

Query: 625 R 625
           +
Sbjct: 408 Q 408


>gi|119503317|ref|ZP_01625401.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium
           HTCC2080]
 gi|119460963|gb|EAW42054.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium
           HTCC2080]
          Length = 624

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 97/638 (15%), Positives = 217/638 (34%), Gaps = 39/638 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ IR  ++    KI + ++ + F  +GL   +F  SG+S V  V   ++       + 
Sbjct: 1   MMQSIRAGTQNTGFKILIFLIILSFAGFGLEQVIFGSSGTS-VAEVNGTEITPQELQVAI 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +   + Q  G  ++ E      +  + L+ L+    L Q   +  + A    +   + 
Sbjct: 60  EGQKRQLMQIFGDNIDPEMLDDDRIRPRALEELIERTLLLQAATENAMVASSRAIGEIVG 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
              +F   D  F  D +   LA  G   + +    T+ +  + +    +     +   L 
Sbjct: 120 SIDVFK-VDGAFDADQYKVVLANAGYTPERFRREQTQQIILSQLQQGVLASDFVTTAELV 178

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
            A     E R V Y+++ +  + + A+ S   + Q +++    + +       YIL    
Sbjct: 179 AAAEATAEERDVRYLIVTDEALRSSAEVSADSVRQVYDRDPSLWTSDATVIADYILISRD 238

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---------DEAFQSLK 291
           +      +    LQ +++  +++Y   E   +  ++     +          D+A   + 
Sbjct: 239 DFLAP--VDQVALQEQFDSIQDEYTVAEQTLIAHILLIQGDDESVEAYTRRVDDAASRIA 296

Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
             + F  LA E    +   +LG    F+   +   ++  ++ SLA  G+ +  +    G 
Sbjct: 297 ADEDFADLAAELSDDVGSAALGGELGFTDGTVFPEAMESAVNSLA-VGEVSAGVKTDAGT 355

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
               +       T  ++++K ++   M+  +A + +      L E       + +     
Sbjct: 356 HFIRILERVAGETPDYEQLKNELEKSMQEAEADQTLLVTVDELRELSFNAADLQQPGGAL 415

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP---LSKDHTVALPDGSYMW 465
            +       V     D          + E+ +  V   D+     +    V L    ++ 
Sbjct: 416 SLSVSQSSPVSLTSGDGV--------FSERAVREVLFSDEVYLEGNNSAIVELSGNRFVV 467

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V++ E   A      EV   ++ D +         +    L      EG+   +I    G
Sbjct: 468 VRVAEKRAAEILPFSEVAKTIRADLEQSAELAAKLALLESLRSRR-NEGERLEEIATAEG 526

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
                     R+ +       + ++  FS    M         ++  +  V  + V P Q
Sbjct: 527 YEWRVELGARRVGS---LLPAEVVTLAFSMQYGMDAELESTQLVNGDLAIVELAGVEPGQ 583

Query: 586 -------EKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
                  EK    + L Q+  +  +      L+    +
Sbjct: 584 LENLSLGEKGAMSAQLIQLQGQLSMLEYRTALRDNAEI 621


>gi|78222137|ref|YP_383884.1| hypothetical protein Gmet_0917 [Geobacter metallireducens GS-15]
 gi|78193392|gb|ABB31159.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
          Length = 549

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/532 (19%), Positives = 207/532 (38%), Gaps = 37/532 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML I+RK  ++ V K+   ++ + F+     +WG  D    ++ SS  V V R KV +  
Sbjct: 22  MLGIMRKYKQSIVIKVVFGLIVLSFIGTIFLVWGKGD--GGLTPSSYAVKVDRTKVSYEE 79

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F  ++ +   + +Q  G  +  E  + + L K+ LD+L+  A L +  +D+G++     V
Sbjct: 80  FQRTYYRLRDIYTQIYGPALTPEVEKQLNLKKQALDSLIDAALLRKAAKDMGVKVSEEEV 139

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              IA  P F  K+  F    + + L    +  KE+       L            ++ +
Sbjct: 140 QKAIAAIPAFQ-KNGAFDSAQYFAVLKANRLAPKEFEAGQKDELMVKKAQDQIKAKVQVT 198

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +    Q  +   +  ++ +   +   +      S+  LT +  K ++ ++ PE   +SY+
Sbjct: 199 DDAARQLYKKRNDRLNLQFTSFSPEELKGEIKLSDQELTDFLAKNQNEFKTPEQISVSYV 258

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYF-----------SPEIRTVEQLVFPNQKEAD 284
           L D  +   K+E++  ++Q+ Y+KN ++Y              +++   Q  +  QK  +
Sbjct: 259 LADPAKLAGKVEVTEADIQSWYQKNIDRYQGKGGILPLAEVKEQVKADAQRFYAGQKAYE 318

Query: 285 EAFQSLKKGK---KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI---FSLAKKGDF 338
            A  S+ K K       +A E G ++S+  L   +K   P ++    +     L K+ + 
Sbjct: 319 LAAASVNKHKTAGDLAAVARELGVAVSETPL-FTAKAPAPALAGEKEVLTRAFLLKQNEL 377

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
              +    G  I  +   KPS      +++  +  + +  +A E  K+  +  +  LA G
Sbjct: 378 GGPVETPKGIYILKLKERKPSDVPPLAQIRAKVEERAKAVRAVELAKKKAEEAQAKLAKG 437

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            +            + L        D KG  V  I    +L+   F   D          
Sbjct: 438 DT----------AGLKLQETGSFAFDAKGN-VPVIGTSPELMEAAFTLTDKAPAPQAPVK 486

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
               ++  ++KE               +K++    K  EE+     +L  + 
Sbjct: 487 IGNRWVAFRLKERTELNAAAFPAEKEKIKQELLPKKQEEELQKWLKELRAKA 538


>gi|121997400|ref|YP_001002187.1| hypothetical protein Hhal_0599 [Halorhodospira halophila SL1]
 gi|121588805|gb|ABM61385.1| conserved hypothetical protein [Halorhodospira halophila SL1]
          Length = 524

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 81/490 (16%), Positives = 178/490 (36%), Gaps = 34/490 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR   + W+A + +  + +PF+  G  +        + V  V  +++P S    + 
Sbjct: 1   MLQAIRDGIKGWIAWVIIGFIALPFIFMGGYEYFGGGQDDAVVARVDGEEIPRSQIDQAV 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   + +  G  +         L ++ L+ L+    L  ++   GL      V   I 
Sbjct: 61  ERQRAQLREMFGGDLPDGAFDGAALRREALEQLIDEQLLHAYVGKQGLRVTDQEVAQTIR 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
              +FH +  +FS   + + L R  +  ++Y     + L               +   L+
Sbjct: 121 GQEIFH-EGGQFSRARYQTLLERNRLTPEDYEGLVRRDLKADQFQQAVFASSISTPSQLE 179

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  R   E+RS  Y+ ++           +A +   +E + D+Y APE  R+ Y+     
Sbjct: 180 RLVRLQDESRSFSYVEIDADRYTDEVSVDDAEVEAHYEAHTDDYMAPEAVRLEYVELGPL 239

Query: 241 EKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               ++++ ++ LQ  Y++   +    P    V + +  +        + ++ G +   +
Sbjct: 240 ALRDQVDVDDETLQERYDERYGDDDDPPTFDDVREELLADSIREQYRTELIEAGDELGNI 299

Query: 300 AEEQGKSLS------------------DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           A EQ  SL                   D   G      + + + ++ +       D   V
Sbjct: 300 AFEQPDSLEPLVDTFGLEVRTSDWIDRDGGEGIGDLSEVVEEAFSEDVLEHGYNSDLIRV 359

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
                 Y++  +   + +     +EV   I  Q+R  +A++  +E  + L   L  G S+
Sbjct: 360 DEDR--YLVVRLLEHREAEPKPLEEVADTIREQLRQERAADLARERAEELVARLRDGDSL 417

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
           DE++   ++    +       +             E ++   F  +        V L DG
Sbjct: 418 DELAEELEVERFTVEDAYRDDRSHP----------EAVVREAFALEVDGYAR--VELDDG 465

Query: 462 SYMWVQIKES 471
           S   +++   
Sbjct: 466 SAALLRLDGI 475



 Score = 80.4 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 96/264 (36%), Gaps = 28/264 (10%)

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           V++++       +   ++ E    L         S++ +     +       +D  G + 
Sbjct: 272 VREELLADSIREQYRTELIEAGDELGNIAFEQPDSLEPLVDTFGLEVRTSDWIDRDGGEG 331

Query: 426 KGK--EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV- 482
            G   EV    + E +L   +  D        + + +  Y+ V++ E   A  + LEEV 
Sbjct: 332 IGDLSEVVEEAFSEDVLEHGYNSD-------LIRVDEDRYLVVRLLEHREAEPKPLEEVA 384

Query: 483 ---LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
                      +  + A+    +A +LV    ++G +  ++ + L     T     R D 
Sbjct: 385 DTIREQ----LRQERAADLARERAEELVARL-RDGDSLDELAEELEVERFTVEDAYRDDR 439

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-----EKDKFISYL 594
            +       + + F+  V+      +++G +  + ++     G  +     E+ +    L
Sbjct: 440 SH---PEAVVREAFALEVDGYARVELDDGSA-ALLRLDGISRGDPEGLSAQERQQLQQQL 495

Query: 595 TQMMNKDLLDSVIAYLKSQYSVTV 618
            +M     + ++I  L+++  + +
Sbjct: 496 QRMAGDSEVRALIRALRAEAEIEI 519


>gi|87200036|ref|YP_497293.1| hypothetical protein Saro_2020 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135717|gb|ABD26459.1| hypothetical protein Saro_2020 [Novosphingobium aromaticivorans DSM
           12444]
          Length = 646

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 99/643 (15%), Positives = 220/643 (34%), Gaps = 18/643 (2%)

Query: 1   MLEIIRKASRTWV----AKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSS 55
           ML   R   ++ +    A +FL ++ + F    ++ + F           VG  ++    
Sbjct: 1   MLGFFRSFLKSRIGVAIALLFLGLIALAFASADVTGSGFGGVAGGDRAAKVGSGRIGTGE 60

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
              +         QK   +   +     GL + +L  ++    L ++ +  GL      V
Sbjct: 61  LGKALTSAFEQDRQKQPGLTMKQFLDGGGL-EGVLSGMIDRLALAEWGKKHGLAVSDRLV 119

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI +   F G D KFS   +   LA+ G+ +KE  +   + L    ++     G +  
Sbjct: 120 DSEIVKIGAFQGPDGKFSQKAYEQLLAQRGLTDKEVRNDLAQGLMARQLLLPAAFGAQMP 179

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
              + +      E R    I + +        P +  L  ++   K  Y  PE + I Y 
Sbjct: 180 AEAVLRYASLLTEKRVGTIISVPSLAFAPAGGPDDNALAAFYNANKGRYMQPERRTIRYA 239

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           L D    +     ++ E+   Y+ N   Y   E R+V Q++ P +  A      + KG  
Sbjct: 240 LVDEATLKNVPAPTDAEIANRYKLNTAVYAPSEQRSVTQVIVPTEAAARALAAEVGKGGA 299

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVS--LADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
               A  +G   S   L   +++ + + +          A  G          G+ +  V
Sbjct: 300 LDTAARSKGLVAS--KLADQTRDTLANQTSKAVADAAFAATAGTLATPAKSGLGWHVLKV 357

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
             +K +   +  + + +I   + + K    + +   ++E+ +  GT + +I++   +   
Sbjct: 358 DAVKRNPGKTLDQARAEIVTALTLEKRRAALSDLAAQVEQEIDSGTGLADIAKNLGLTVQ 417

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
               +   G         A      L+   F  +           P   +    + +   
Sbjct: 418 TTQPLLANGTVFGKAAEKAPADIAPLVQAAFAMEREGEAQLAEIKPGEKFAIYDVGQLTA 477

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
           A    L  +   V +DW   + + +  + A++++    K G    +  K  G ++     
Sbjct: 478 ATPAPLAAIKDAVARDWALQQGSAKAKAAADRILAALDK-GTPLAEAVKLAGVAIPAPQP 536

Query: 534 I---NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
           I    +     +      ++ +F+      K     N   + V  + +   G V+ +D+ 
Sbjct: 537 IDMGRQQIGAMQGQVPPPLALLFAMAEGSNKRLEGPNKAGWYVVSLKDIVPGAVKREDQI 596

Query: 591 ISYLTQMMNKDLLDSVIAYLK----SQYSVTVHDNLIQRYLDG 629
            +  ++ +     +     L+        +  +++ I+   + 
Sbjct: 597 FAGASRELGAVTGNEYAESLRRAIGKDLGIERNESAIKAVRNQ 639


>gi|29654742|ref|NP_820434.1| hypothetical protein CBU_1451 [Coxiella burnetii RSA 493]
 gi|29542010|gb|AAO90948.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii RSA 493]
          Length = 522

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 93/501 (18%), Positives = 194/501 (38%), Gaps = 37/501 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           ML+ I +  + W+A + L V+ + F++WG+   L S  G + TV  V  +K+  +     
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +++     S + G  +    A++  L ++ L NL+    L    E +G       +   I
Sbjct: 61  FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F  ++ KFS   F   L    +   +++    ++     V     G        +
Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                   + R   Y+++++      +  +  ++  +++K++++++APE   I+Y+L   
Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237

Query: 240 HEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFP-------NQKEADEAFQSLK 291
               +++ +S+ E++  YE N+E K F+     ++Q +          +K    +  +  
Sbjct: 238 EMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297

Query: 292 KGKKFIQLAEEQGKSLSDISL--------GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                   A +    ++   L        G      I   + +D +       D   +  
Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAVNPKIVAAAFSDDVLQGGNNSDVIELKD 357

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
           GS   VI  V + +PS  +  + V   I +Q++   A  K       ++  +  G S++ 
Sbjct: 358 GSL--VILRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVES 415

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPD 460
           I++   +   +   V    K +             ++   F    PL KDH   T  L +
Sbjct: 416 IAKANHLFWRNEKEVKRNNKSIPA----------AVMASAFS--IPLKKDHSMTTTVLNN 463

Query: 461 GSYMWVQIKESIPARDRKLEE 481
           G    VQ+    PA  + + E
Sbjct: 464 GDSAVVQLTAIKPANFKNITE 484



 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 95/281 (33%), Gaps = 20/281 (7%)

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRR 407
                         SF +VK  I   +   K +  + +   +L        TS++  +R+
Sbjct: 249 HEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQ 308

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465
             +      L    G+         I    +++   F  D     +    + L DGS + 
Sbjct: 309 LNLKINTTLLFSREGEK------EGIAVNPKIVAAAFSDDVLQGGNNSDVIELKDGSLVI 362

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           +++K+  P+    L+ V   ++   KT     + S  A ++  E   EG++   I K   
Sbjct: 363 LRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEI-HEGRSVESIAKANH 421

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP 583
                  ++ R    NK      ++  FS P   +      + N     V ++T  K   
Sbjct: 422 LFWRNEKEVKRN---NKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSAVVQLTAIKPAN 478

Query: 584 -----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
                 ++K+   + L+           +   +S+  + ++
Sbjct: 479 FKNITEKQKNSLENLLSTQWGNLEYQFYMQAARSRAKIKIN 519


>gi|94969792|ref|YP_591840.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551842|gb|ABF41766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 654

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 105/666 (15%), Positives = 232/666 (34%), Gaps = 58/666 (8%)

Query: 1   MLEIIRK--ASRTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVGRQKVP 52
           M+  ++    ++  V    L V+ V  ++              +V+G S +  V  + + 
Sbjct: 1   MIRFLQTPSKTKKIVLGGLLTVICVMMVVTLIPGGGIFGFGDTTVTGDSDLAKVDGEAIT 60

Query: 53  FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
            +    + +       Q+              L  + ++ L+    +      +GL    
Sbjct: 61  AADASKAAQNM--AQQQRYPAQF------VPFLMPQAVEMLIKQKAVLDEAHRMGLNVSD 112

Query: 113 GRVWGEIARS---PLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMF 168
             +   + +     +   K N    D + + +  +  +   ++     K +    + G+ 
Sbjct: 113 EELRAVLHKGQFGEILFPKGNYVGDDAYQNFVQSQFSMTVPQFELELKKSIEIQKLRGVV 172

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--A 226
                 ++  +D   R        DY  L+   +    +PS+A +  W+E +KD ++   
Sbjct: 173 EASATVADADIDNLVRQQQTKVKFDYASLSLADIEKGINPSDAEMKAWYEAHKDQFKDSL 232

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           PE ++I Y+     +    ++ S+ ++Q  Y  +K ++  P+  TV+ ++    + AD  
Sbjct: 233 PEKRKIKYVSVIGSKLP-GVQPSDADIQKYYNDHKTEFTIPQTATVQHILVMVPQGADAK 291

Query: 287 ------------FQSLKKGKKFIQLAEEQGKSLSDISLG-SFSKEYIPDVSLADSIFSLA 333
                        +  + G  F +LA++              + +        D+  +  
Sbjct: 292 TDAAAKAKAEDYLKQARGGANFGELAKKYSDDKGTGDSTLEVTPQGNLVKEFKDASLA-G 350

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           K GD    +   FGY I  +   +P+   S  EVK  IA  M   KA++  ++    L  
Sbjct: 351 KTGDILGPVKTQFGYHIIKIQKNEPAGARSLDEVKSQIAIVMGGQKAADAAQKAADNLRN 410

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
             A    +D+ +            V  +        +  I    Q +  VF  +     D
Sbjct: 411 S-ARVQGLDKAAAAAGDTVETTDFVTQSSL------LPGIGQAPQFMNAVFKANAKSGAD 463

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
                  G Y   ++ +  P      E+    V++ +K  K    +  KA +L  + ++ 
Sbjct: 464 VAPIT--GGYAVYEVTDVQPPATPTFEQAKAQVEQQFKAGKAQTLIVQKAQEL-ADRART 520

Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS--QVFSGPVEMVKCFPIENGLSY 571
             + +   K  G ++ T+  + +           G S   VF+G    +   P++ G + 
Sbjct: 521 EHDLKKAAKEAGVTVKTSEMVTQSSQVPDVGSLSGPSFTAVFAGKTGDI-IGPVQGGRNA 579

Query: 572 VVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYL----KSQYSVTVHDNLI 623
           +V  V   +     E    K++    L      ++L+  ++ L    +    +  +   I
Sbjct: 580 IVIAVVEKQEPTADEMTKGKEEARQQLLAKKKDEVLEIYVSNLIASMEKSGKIKRNKKAI 639

Query: 624 QRYLDG 629
           +R   G
Sbjct: 640 ERLSQG 645


>gi|161830280|ref|YP_001597297.1| hypothetical protein COXBURSA331_A1623 [Coxiella burnetii RSA 331]
 gi|161762147|gb|ABX77789.1| conserved hypothetical protein [Coxiella burnetii RSA 331]
          Length = 522

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 92/501 (18%), Positives = 194/501 (38%), Gaps = 37/501 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           ML+ I +  + W+A + L V+ + F++WG+   L S  G + TV  V  +K+  +     
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +++     S + G  +    A++  L ++ L NL+    L    E +G       +   I
Sbjct: 61  FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F  ++ KFS   F   L    +   +++    ++     V     G        +
Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                   + R   Y+++++      +  +  ++  +++K++++++APE   I+Y+L   
Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237

Query: 240 HEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFP-------NQKEADEAFQSLK 291
               +++ +S+ E++  YE N+E K F+     ++Q +          +K    +  +  
Sbjct: 238 EMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297

Query: 292 KGKKFIQLAEEQGKSLSDISL--------GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                   A +    ++   L        G      I   + +D +       D   +  
Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAVNPKIVAAAFSDDVLQGGNNSDVIELKD 357

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
           GS   V+  V + +PS  +  + V   I +Q++   A  K       ++  +  G S++ 
Sbjct: 358 GSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVES 415

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPD 460
           I++   +   +   V    K +             ++   F    PL KDH   T  L +
Sbjct: 416 IAKANHLFWRNEKEVKRNNKSIPA----------AVMASAFS--IPLKKDHSMTTTVLNN 463

Query: 461 GSYMWVQIKESIPARDRKLEE 481
           G    VQ+    PA  + + E
Sbjct: 464 GDSAVVQLTAIKPANFKNITE 484



 Score =  110 bits (274), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 95/281 (33%), Gaps = 20/281 (7%)

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRR 407
                         SF +VK  I   +   K +  + +   +L        TS++  +R+
Sbjct: 249 HEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQ 308

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465
             +      L    G+         I    +++   F  D     +    + L DGS + 
Sbjct: 309 LNLKINTTLLFSREGEK------EGIAVNPKIVAAAFSDDVLQGGNNSDVIELKDGSLVV 362

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           +++K+  P+    L+ V   ++   KT     + S  A ++  E   EG++   I K   
Sbjct: 363 LRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEI-HEGRSVESIAKANH 421

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP 583
                  ++ R    NK      ++  FS P   +      + N     V ++T  K   
Sbjct: 422 LFWRNEKEVKRN---NKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSAVVQLTAIKPAN 478

Query: 584 -----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
                 ++K+   + L+           +   +S+  + ++
Sbjct: 479 FKNITEKQKNSLENLLSTQWGNLEYQFYMQAARSRAKIKIN 519


>gi|222056568|ref|YP_002538930.1| hypothetical protein Geob_3486 [Geobacter sp. FRC-32]
 gi|221565857|gb|ACM21829.1| conserved hypothetical protein [Geobacter sp. FRC-32]
          Length = 526

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/531 (17%), Positives = 191/531 (35%), Gaps = 37/531 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML I+RK  ++ + KI   ++ + F+     +WG  D     +G      V   K+    
Sbjct: 1   MLGIMRKYKQSVLIKIVFCIIVLSFVGTIFLVWGRGDE---TTGGDFAAKVNGTKISMDD 57

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           ++ ++ +   +  Q  G  +  +  + +G+ K  +++L+  A + +  + +G+  +   +
Sbjct: 58  YLKNYDRMKSLYQQIYGQAMTPDLEKQLGIRKMAINSLIDNALIVKEAKRMGIAVNKDEI 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EIA+ P F  KD  F+ D +   L    +    + +   + +               S
Sbjct: 118 ANEIAKVPAFQ-KDGVFNFDQYTQMLKAYRMTPANFEEGQEQEMLVKKAREKVKERATVS 176

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +  L QA     +   + +I  +   V      ++  LT + + ++  ++ PE   I+Y 
Sbjct: 177 DQDLQQAFNKQNDKVDLSFISFSPSDVKNEVKVTDQDLTTYLQGHEKEFQTPEKVSIAYA 236

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFS-------PEIRTVEQLVFPNQKEADEAFQ 288
           L        K  ++++E +  Y KN ++Y          E++   +     QK   EA++
Sbjct: 237 LVSPSRFSSKATVTDEEAETYYRKNIDRYQGKGGILPFAEVKDRAKADAIKQKGTREAYE 296

Query: 289 SLK-------KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFT 339
           ++        KG      A   G  + +  L +      P     + I    L K+G+  
Sbjct: 297 TVADTINKNLKGGDIKAAAASLGVKVDETPLFTAKTAPAPLADEGEVIKRAFLLKQGELG 356

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
             I  + G  I  V   KP+      E+K  +  ++   KA E  K+  +     LA GT
Sbjct: 357 GPIETAKGIYIIKVMEKKPAAVPPLAEIKGQLTQKVTEEKARELAKKKAEEALAQLAKGT 416

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
                       ++             G  +  I     L+   F               
Sbjct: 417 G-----------TVKTQETGAFAYAANGV-IPRIGTSPDLMEAAFNLTAAAPTPKNTFKA 464

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
              +  V++K+ I       ++    +++     K  E + +   +L  + 
Sbjct: 465 GDRWYAVKLKQRIELNRADFQKNKEQIRQTLLPKKQQEALDNWMKELKAKA 515



 Score = 85.4 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 84/271 (30%), Gaps = 19/271 (7%)

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
               + F EVK          K + +  E           G  +   +    +   + PL
Sbjct: 268 KGGILPFAEVKDRAKADAIKQKGTREAYETVADTINKNLKGGDIKAAAASLGVKVDETPL 327

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
                        A +  + +++ R F           +    G Y+ +++ E  PA   
Sbjct: 328 F------TAKTAPAPLADEGEVIKRAFLLKQG-ELGGPIETAKGIYI-IKVMEKKPAAVP 379

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
            L E+   + +     K  E    KA + + + +K     +   +  GA     N +   
Sbjct: 380 PLAEIKGQLTQKVTEEKARELAKKKAEEALAQLAKGTGTVKT--QETGAFAYAANGV--- 434

Query: 538 DNENKFFGYDGISQVFS-GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596
                    D +   F+            + G  +   K+         +  K    + Q
Sbjct: 435 -IPRIGTSPDLMEAAFNLTAAAPTPKNTFKAGDRWYAVKLKQRIELNRADFQKNKEQIRQ 493

Query: 597 MM----NKDLLDSVIAYLKSQYSVTVHDNLI 623
            +     ++ LD+ +  LK++  + ++ +++
Sbjct: 494 TLLPKKQQEALDNWMKELKAKAKIQINPSIL 524


>gi|153837998|ref|ZP_01990665.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus
           AQ3810]
 gi|149748606|gb|EDM59465.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus
           AQ3810]
          Length = 459

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/468 (17%), Positives = 183/468 (39%), Gaps = 25/468 (5%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  ++             +    + + + R +  + ++        + ++  +  +++ 
Sbjct: 1   MREQLLTALQSSEFTLPGEVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKA 60

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             DN+  PE  ++SY+       +K+I++++++++  Y+++ +KY S E R V  ++   
Sbjct: 61  NPDNFTRPEQVKVSYVELSAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEG 120

Query: 279 -NQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLA 333
            ++ +A      L  G  F  +A+E+            LG   ++ + D +  ++ F+L 
Sbjct: 121 DDEAKAQAILDELNAGADFAAVAQEKSDDFGSAENGGDLGWIERD-VMDPAFEEAAFALK 179

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             GD + ++   FGY I  +  +K +    F EV  +I  ++   KA ++  E    LE 
Sbjct: 180 NPGDMSGLVKSDFGYHIIKLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELER 239

Query: 394 -FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
                  S+D+ S   K ++ ++   DF  + V   EV       Q L     K+D L+ 
Sbjct: 240 VAFEYPDSLDDAS---KAINQEVKTTDFISQ-VDAPEVLRNQAVMQALLSPEVKEDGLN- 294

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
              + +     + V++++S       L EV   V  +   VK  +       ++V   ++
Sbjct: 295 SEAIEVAPEHIIVVRVEDSRDETVLPLAEVKDQVVAELSRVKGEQGALELGTKVVAALNE 354

Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--S 570
                  +      +      ++R                 + PV+    +     L  +
Sbjct: 355 GNT---AVLAENNLTFGEQETVDRRS------PLATTVFAMAKPVDGKPVYGQSKDLEGN 405

Query: 571 YVVFKVTNSKVG-PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            VV ++   K       +D+    + +  ++  L SV+A L++   + 
Sbjct: 406 IVVIELDAVKAELDSSLEDQVAMQMQRASSQQDLSSVLAVLRANTDIE 453


>gi|165919397|ref|ZP_02219463.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
 gi|165916913|gb|EDR35517.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
          Length = 522

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/501 (18%), Positives = 195/501 (38%), Gaps = 37/501 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           ML+ I +  + W+A + L V+ + F++WG+   L S  G + TV  V  +K+  +     
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +++     S + G  +    A++  L ++ L NL+    L    E +G       +   I
Sbjct: 61  FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F  ++ KFS   F   L    +   +++    ++     V     G        +
Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                   + R   Y+++++      +  +  ++  +++K++++++APE   I+Y+L   
Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237

Query: 240 HEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFP-------NQKEADEAFQSLK 291
               +++ +S+ E++  YE N+E K F+     ++Q +          +K    +  +  
Sbjct: 238 EMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297

Query: 292 KGKKFIQLAEEQGKSLSDISL--------GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                   A +    ++   L        G  +   I   + +D +       D   +  
Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAANPKIVAAAFSDDVLQGGNNSDVIELKD 357

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
           GS   V+  V + +PS  +  + V   I +Q++   A  K       ++  +  G S++ 
Sbjct: 358 GSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVES 415

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPD 460
           I++   +   +   V    K +             ++   F    PL KDH   T  L +
Sbjct: 416 IAKANHLFWRNEKEVKRNNKSIPA----------AVMASAFS--IPLKKDHSMTTTVLNN 463

Query: 461 GSYMWVQIKESIPARDRKLEE 481
           G    VQ+    PA  + + E
Sbjct: 464 GDSAVVQLTAIKPANFKNITE 484



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 20/281 (7%)

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRR 407
                         SF +VK  I   +   K +  + +   +L        TS++  +R+
Sbjct: 249 HEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQ 308

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465
             +    +       ++ + + +AA P   +++   F  D     +    + L DGS + 
Sbjct: 309 LNL---KINTTLLFSREGEKEGIAANP---KIVAAAFSDDVLQGGNNSDVIELKDGSLVV 362

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           +++K+  P+    L+ V   ++   KT     + S  A ++  E   EG++   I K   
Sbjct: 363 LRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEI-HEGRSVESIAKANH 421

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP 583
                  ++ R    NK      ++  FS P   +      + N     V ++T  K   
Sbjct: 422 LFWRNEKEVKRN---NKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSAVVQLTAIKPAN 478

Query: 584 -----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
                 ++K+   + L+  +        +   +S+  + ++
Sbjct: 479 FKNITEKQKNSLENLLSTQLGNLEYQFYMQAARSRAKIKIN 519


>gi|325265616|ref|ZP_08132306.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC
           33394]
 gi|324982886|gb|EGC18508.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC
           33394]
          Length = 608

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 101/625 (16%), Positives = 243/625 (38%), Gaps = 56/625 (8%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           ++++ L ++ V F+ +G++     V  +  +V +G Q +  ++   + +      SQ  G
Sbjct: 11  LSQVLLGIIGVSFVGFGIASFEI-VRDNRYIVKIGDQVINRAALDEAVRN-----SQASG 64

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
              +          +++   LV  A L +  + +G+     ++   I  +P+FH +  KF
Sbjct: 65  GSAS---------REEVFQTLVQRAYLMEGAKALGIAVSDTQIKQGIVDAPIFHDEQGKF 115

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           S + F + L    ++E  ++    + L+   ++ M    +  S    ++  +     R +
Sbjct: 116 SPERFQTFLKNNHLSESAFMQMERERLTLVSLLQMLNSNVVTSG-QAERYIQTQMAERVI 174

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
              V N  +  A     +A L ++++ +K NY      +  Y++    +   K  +S +E
Sbjct: 175 RTSVFNPENYAAQVKAGDAELQKYYDAHKSNYAVAPGVKYEYMVVSPKDLVDKQTVSAEE 234

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AFQSLKKGKKFIQL 299
           +QA  +           R +  ++    K AD              A ++     KF +L
Sbjct: 235 VQAALKTATT--NQKPTRRIAHIMINAPKSADAATRQKAREQAEKIAQEAKASPDKFAEL 292

Query: 300 AEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A++     G + +   LG+ ++  +P   L D+ F LA+ G  + V+   FGY I  V  
Sbjct: 293 AKQYSQDTGSAQNGGDLGALTQGSLPAKPLDDAAFKLAQ-GAVSDVVETDFGYHIVRVLE 351

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+ +        +  +  ++++ KA +  ++  + + EF      +   +++  +     
Sbjct: 352 IQGNDA---AAQEARVRQELQLKKAQQAYEKIREEIAEFTLNTPDLKAAAQKFGL----- 403

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL-PDGSYMWVQIKESIPA 474
             V    + +      ++   + +   +F +D    K  +  +  DG+  +V++ ++ PA
Sbjct: 404 -TVQQQNEWLTQANAGSLHVPKAVADTLFSEDVMTKKHISEGISADGATWFVRVTDTRPA 462

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
               L      ++ D+   ++     + A Q   +            K +  +      +
Sbjct: 463 GTETLATARDRIRADFVRAESIRLARAAAQQAQTDLQAR--------KAVTLAWTPEQNV 514

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVGPVQEKDKFIS 592
             M  +      D  + + + P      + +   NG+  +V  + N+ +G  Q       
Sbjct: 515 LPMQMQAALVPADYKAFMAAVPNNGQPAYAVVERNGMVELVEVLKNNPLGGGQIIQAVRM 574

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVT 617
            L Q+  + +  + + YL+++    
Sbjct: 575 QLAQLRGETVTQAYLQYLQTKIPTK 599


>gi|153209250|ref|ZP_01947306.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
 gi|120575458|gb|EAX32082.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
          Length = 522

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 92/501 (18%), Positives = 195/501 (38%), Gaps = 37/501 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           ML+ I +  + W+A + L V+ + F++WG+   L S  G + TV  V  +K+  +     
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +++     S + G  +    A++  L ++ L NL+    L    E +G       +   I
Sbjct: 61  FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F  ++ KFS   F   L    +   +++    ++     V     G        +
Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                   + R   Y+++++      +  +  ++  +++K++++++APE   I+Y+L   
Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237

Query: 240 HEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFP-------NQKEADEAFQSLK 291
               +++ +S+ E++  YE N+E K F+     ++Q +          +K    +  +  
Sbjct: 238 EMILQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297

Query: 292 KGKKFIQLAEEQGKSLSDISL--------GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                   A +    ++   L        G  +   I   + +D +       D   +  
Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAANPKIVAAAFSDDVLQGGNNSDVIELKD 357

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
           GS   V+  V + +PS  +  + V   I +Q++   A  K       ++  +  G S++ 
Sbjct: 358 GSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVES 415

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPD 460
           I++   +   +   V    K +             ++   F    PL KDH   T  L +
Sbjct: 416 IAKANHLFWRNEKEVKRNNKSIPA----------AVMASAFS--IPLKKDHSMTTTVLNN 463

Query: 461 GSYMWVQIKESIPARDRKLEE 481
           G    VQ+    PA  + + E
Sbjct: 464 GDSDVVQLTAIKPANFKNITE 484



 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 20/281 (7%)

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRR 407
                         SF +VK  I   +   K +  + +   +L        TS++  +R+
Sbjct: 249 HEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQ 308

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465
             +    +       ++ + + +AA P   +++   F  D     +    + L DGS + 
Sbjct: 309 LNL---KINTTLLFSREGEKEGIAANP---KIVAAAFSDDVLQGGNNSDVIELKDGSLVV 362

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           +++K+  P+    L+ V   ++   KT     + S  A ++  E   EG++   I K   
Sbjct: 363 LRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEI-HEGRSVESIAKANH 421

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP 583
                  ++ R    NK      ++  FS P   +      + N     V ++T  K   
Sbjct: 422 LFWRNEKEVKRN---NKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSDVVQLTAIKPAN 478

Query: 584 -----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
                 ++K+   + L+  +        +   +S+  + ++
Sbjct: 479 FKNITEKQKNSLENLLSTQLGNLEYQFYMQAARSRAKIKIN 519


>gi|154706549|ref|YP_001423952.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway
           5J108-111]
 gi|154355835|gb|ABS77297.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway
           5J108-111]
          Length = 522

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/501 (18%), Positives = 195/501 (38%), Gaps = 37/501 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           ML+ I +  + W+A + L V+ + F++WG+   L S  G + TV  V  +K+  +     
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +++     S + G  +    A++  L ++ L NL+    L    E +G       +   I
Sbjct: 61  FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F  ++ KFS   F   L    +   +++    ++     V     G        +
Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLMSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                   + R   Y+++++      +  +  ++  +++K++++++APE   I+Y+L   
Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237

Query: 240 HEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFP-------NQKEADEAFQSLK 291
               +++ +S+ E++  YE N+E K F+     ++Q +          +K    +  +  
Sbjct: 238 EMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297

Query: 292 KGKKFIQLAEEQGKSLSDISL--------GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                   A +    ++   L        G  +   I   + +D +       D   +  
Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAANPKIVAAAFSDDVLQGGNNSDVIELKD 357

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
           GS   V+  V + +PS  +  + V   I +Q++   A  K       ++  +  G S++ 
Sbjct: 358 GSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVES 415

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPD 460
           I++   +   +   V    K +             ++   F    PL KDH   T  L +
Sbjct: 416 IAKANHLFWRNEKEVKRNNKSIPA----------AVMASAFS--IPLKKDHSMTTTVLNN 463

Query: 461 GSYMWVQIKESIPARDRKLEE 481
           G    VQ+    PA  + + E
Sbjct: 464 GDSAVVQLTAIKPANFKNITE 484



 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 100/281 (35%), Gaps = 20/281 (7%)

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRR 407
                         SF +VK  I   +   K +  + +   +L        TS++  +R+
Sbjct: 249 HEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQ 308

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465
             +    +       ++ + + +AA P   +++   F  D     +    + L DGS + 
Sbjct: 309 LNL---KINTTLLFSREGEKEGIAANP---KIVAAAFSDDVLQGGNNSDVIELKDGSLVV 362

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           +++K+  P+    L+ V   ++   KT     + S  A ++  E   EG++   I K   
Sbjct: 363 LRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEI-HEGRSVESIAKANH 421

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP 583
                  ++ R    NK      ++  FS P   +      + N     V ++T  K   
Sbjct: 422 LFWRNEKEVKRN---NKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSAVVQLTAIKPAN 478

Query: 584 -----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
                 ++K+   + L+           +   +S+  + ++
Sbjct: 479 FKNITEKQKNSLENLLSTQWGNLEYQFYMQAARSRAKIKIN 519


>gi|148264907|ref|YP_001231613.1| hypothetical protein Gura_2867 [Geobacter uraniireducens Rf4]
 gi|146398407|gb|ABQ27040.1| hypothetical protein Gura_2867 [Geobacter uraniireducens Rf4]
          Length = 525

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/531 (18%), Positives = 198/531 (37%), Gaps = 38/531 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML I+RK  ++ + KI   V+   F+     +WG  D             V   K+ F  
Sbjct: 1   MLGIMRKYKQSVLIKIVFCVIVFSFIGTIFLVWGRGD---KTDSGDFAAKVNGTKISFDE 57

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +  ++ +  G+  Q  G  +  E  + +G+ K  L++L+  A + +  + +G++ +   +
Sbjct: 58  YQKNYYRMKGIYEQIYGRSMTPEMEKQLGIKKTALESLIDNALILKEAKRLGIDVNRDEI 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EIA+ P F  KD  F+ D +   L    I  + + +   + +               S
Sbjct: 118 SAEIAKMPAFQ-KDGVFNFDQYTQMLKANRITPQNFEESMEEDMLVKKTREKIKERATVS 176

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +  L QA +   +   + +I  +   V      ++  L  + + +++ ++ PE   I+Y 
Sbjct: 177 DQDLLQAFKKQNDKIDLSFIAFSPAEVKGEVKVTDQDLNSYLQGHQEEFKTPEQLSIAYA 236

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYF----------SPEIRTVEQLVFPNQKEA-D 284
           + D  +   K+ +S++E Q  Y+KN ++Y             E    + L   + KEA +
Sbjct: 237 VLDPAQFAAKLTVSDEEAQTYYQKNIDRYQGKGGILPFAEVKEQAKADALKLKSTKEAYE 296

Query: 285 EAFQSLK---KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL--AKKGDFT 339
           +   ++    K       A   G  + +  L +           AD I      K+G+  
Sbjct: 297 KVADAVNKNLKNADINAAAASLGVKVLETPLFTEKAPATALAGEADVIKKALFLKQGELG 356

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
             +  S G  +  V    P+      ++K  ++ ++   KA E  K+  +          
Sbjct: 357 GPVETSKGIYLIKVKEKIPAAVPPLAQIKTQVSQKVAEEKARELAKKKAE---------- 406

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
             + +++  K  ++ L      G    G  V  I     L+   F          T    
Sbjct: 407 --EALAQLTKGSAVKLQETGSFGYAPTGV-VPRIGTSADLMEAAFALTTAAPAAKTPFKV 463

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
             S+  V++K+   A     ++    +K+     K  E + +   +L  + 
Sbjct: 464 GNSWYAVKLKQRTEANTADFQKSKEQLKQALLPKKQQETLDNWLKELKSKA 514


>gi|212212179|ref|YP_002303115.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212]
 gi|212010589|gb|ACJ17970.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212]
          Length = 522

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/501 (18%), Positives = 193/501 (38%), Gaps = 37/501 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           ML+ I +  + W+A + L V+ + F++WG+   L S  G + TV  V  +K+  +     
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +++     S + G  + S  A++  L ++ L NL+    L    E +G       +   I
Sbjct: 61  FQRLQRAYSLQRGQTLVS--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F  ++ KFS   F   L    +   +++    ++     V     G        +
Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                   + R   Y++++       +  +  ++  +++K++++++APE   I+Y+L   
Sbjct: 178 KNNYELINQARDFRYMIISRAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237

Query: 240 HEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFP-------NQKEADEAFQSLK 291
               +++ +S+ E++  YE N+E K F+     ++Q +          +K    +  +  
Sbjct: 238 EMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297

Query: 292 KGKKFIQLAEEQGKSLSDISL--------GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                   A +    ++   L        G      I   + +D +       D   +  
Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAVNPKIVAAAFSDDVLQGGNNSDVIELKD 357

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
           GS   V+  V + + S  +  + V   I +Q++   A  K       ++  +  G S++ 
Sbjct: 358 GSL--VVLRVKDHQLSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVES 415

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPD 460
           I++   +   +   V    K +             ++   F    PL KDH   T  L +
Sbjct: 416 IAKANHLFWRNEKEVKRNNKSIPA----------AVMASAFS--IPLKKDHSMTTTVLNN 463

Query: 461 GSYMWVQIKESIPARDRKLEE 481
           G    VQ+    PA  + + E
Sbjct: 464 GDSAVVQLTAIKPANFKNITE 484



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 94/281 (33%), Gaps = 20/281 (7%)

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRR 407
                         SF +VK  I   +   K +  + +   +L        TS++  +R+
Sbjct: 249 HEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQ 308

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465
             +      L    G+         I    +++   F  D     +    + L DGS + 
Sbjct: 309 LNLKINTTLLFSREGEK------EGIAVNPKIVAAAFSDDVLQGGNNSDVIELKDGSLVV 362

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           +++K+   +    L+ V   ++   KT     + S  A ++  E   EG++   I K   
Sbjct: 363 LRVKDHQLSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEI-HEGRSVESIAKANH 421

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP 583
                  ++ R    NK      ++  FS P   +      + N     V ++T  K   
Sbjct: 422 LFWRNEKEVKRN---NKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSAVVQLTAIKPAN 478

Query: 584 -----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
                 ++K+   + L+           +   +S+  + ++
Sbjct: 479 FKNITEKQKNSLENLLSTQWGNLEYQFYMQAARSRAKIKIN 519


>gi|238021983|ref|ZP_04602409.1| hypothetical protein GCWU000324_01888 [Kingella oralis ATCC 51147]
 gi|237866597|gb|EEP67639.1| hypothetical protein GCWU000324_01888 [Kingella oralis ATCC 51147]
          Length = 610

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 107/624 (17%), Positives = 221/624 (35%), Gaps = 54/624 (8%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
             I L ++ V F+ +G    L  +S  + +V VG Q +   +   + +            
Sbjct: 12  VTILLSLIAVSFMGYGFVS-LQGISRDNYIVKVGDQIITRYALDQAVQN----------- 59

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
              +E A      + +   L+  A L +  + +G+     ++   +  +P FH    KF 
Sbjct: 60  ---TEAAGEPASREAVFQTLLQRAYLLEGAKQLGIVVSDEQIKQIVVDNPQFHDTSGKFD 116

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
             +F + L     +E+ ++    + LS   ++         S+    Q        RS  
Sbjct: 117 PKLFQAYLTNTRQSEESFMQAQRENLSVAALLQTL-NSNAVSDFQAQQVINAVLAPRSTR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
             VLN +         +A L +++E  K +Y  P+  +  YI+    +   K  +S+ E+
Sbjct: 176 AYVLNPQAFADKVKADDAALKKYYEANKKDYLLPQGAKFEYIVLSPKDIAGKQSVSDAEI 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-------------GKKFIQLA 300
           +A Y  +K        R V  ++    K AD A +   +              ++F ++A
Sbjct: 236 EAAYNASKGSLKP--KRRVSHILIEAPKSADAATREKARAEAEKIAAEAKAHPEQFAEIA 293

Query: 301 E----EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +    + G + +   LG  +++  I   +L D+ F+L  KG+ + V+   FGY +  V++
Sbjct: 294 KRASQDVGSAANGGDLGEIAQDGKIGSKALEDAAFAL-NKGEVSGVVESDFGYHVLRVTD 352

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I     VS    K  I + ++  KA ++  +  + L E +      D++    +   + +
Sbjct: 353 I---ADVSLAAQKDSIRSSLQAKKAQQEYNKQREALSEAVFSAR--DKLQPAAQQFGLTV 407

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
              +          +       + L         L+        DG   +V+  E+    
Sbjct: 408 QTQNEWTTRANAGSLKIPAAVAEALLAGDVFSKKLNSAAI--NVDGETWFVRPTETRTES 465

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
               E+    V + +K  ++       A  L  E           G N   +  T  Q+ 
Sbjct: 466 TETFEQAKPRVAERFKLAESRRLALEHAKNLQKEL--------AAGNNPAVAWSTVEQVV 517

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVGPVQEKDKFISY 593
            +            + + + P      + + +      +V   +   VG  Q        
Sbjct: 518 PLQVRANLSDDAYFAFMQAIPKNGKPAYAVLDMPAAPQLVEVQSIQTVGNPQALANAKQT 577

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVT 617
           L Q M ++++ + I  L +     
Sbjct: 578 LAQEMGENMIQNYIESLAASIKTQ 601


>gi|212219179|ref|YP_002305966.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154]
 gi|212013441|gb|ACJ20821.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154]
          Length = 522

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 91/501 (18%), Positives = 193/501 (38%), Gaps = 37/501 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
           ML+ I +  + W+A + L V+ + F++WG+   L S  G + TV  V  +K+  +     
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +++     S + G  +    A++  L ++ L NL+    L    E +G       +   I
Sbjct: 61  FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F  ++ KFS   F   L    +   +++    ++     V     G        +
Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                   + R   Y+++++      +  +  ++  +++K++++++APE   I+Y+L   
Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237

Query: 240 HEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFP-------NQKEADEAFQSLK 291
               +++ +S+ E++  YE N+E K F+     ++Q +          +K    +  +  
Sbjct: 238 EMILQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297

Query: 292 KGKKFIQLAEEQGKSLSDISL--------GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                   A +    ++   L        G  +   I   +    +       D   +  
Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAANPKIVAAAFTGDVLQGGNNSDVIELKD 357

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
           GS   V+  V + +PS  +  + V   I +Q++   A  K       ++  +  G S++ 
Sbjct: 358 GSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVES 415

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPD 460
           I++   +   +   V    K +             ++   F    PL KDH   T  L +
Sbjct: 416 IAKANHLFWRNEKEVKRNNKSIPA----------AVMASAFS--IPLKKDHSMTTTVLNN 463

Query: 461 GSYMWVQIKESIPARDRKLEE 481
           G    VQ+    PA  + + E
Sbjct: 464 GDSDVVQLTAIKPANFKNITE 484



 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 20/281 (7%)

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRR 407
                         SF +VK  I   +   K +  + +   +L        TS++  +R+
Sbjct: 249 HEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQ 308

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465
             +    +       ++ + + +AA P   +++   F  D     +    + L DGS + 
Sbjct: 309 LNL---KINTTLLFSREGEKEGIAANP---KIVAAAFTGDVLQGGNNSDVIELKDGSLVV 362

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           +++K+  P+    L+ V   ++   KT     + S  A ++  E   EG++   I K   
Sbjct: 363 LRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEI-HEGRSVESIAKANH 421

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP 583
                  ++ R    NK      ++  FS P   +      + N     V ++T  K   
Sbjct: 422 LFWRNEKEVKRN---NKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSDVVQLTAIKPAN 478

Query: 584 -----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
                 ++K+   + L+  +        +   +S+  + ++
Sbjct: 479 FKNITEKQKNSLENLLSTQLGNLEYQFYMQAARSRAKIKIN 519


>gi|219681828|ref|YP_002468214.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471530|ref|ZP_05635529.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           LSR1 (Acyrthosiphon pisum)]
 gi|219624671|gb|ACL30826.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 623

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 116/626 (18%), Positives = 242/626 (38%), Gaps = 37/626 (5%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
            + + K  L V+ +  ++  +S  +        + +V  +K+ F+ F   +  E     +
Sbjct: 10  NSIIVKFILGVIILSLILSTISIYINRDF-EKYIATVNGEKISFNLFKKMYFIEREKQKK 68

Query: 70  KIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLF 125
            +G      +     +      +L  L++   L+Q+ +++  LE +   +   I  SP+F
Sbjct: 69  ILGKNFFKFSHNENFTKETYNYVLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIF 128

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
             K+NKFS + +++ L        EYI+   K ++  +++                  + 
Sbjct: 129 Q-KNNKFSKERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNIIKL 187

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
             + R +   ++         + +N     +F+K +DN+  PE  +I+++         K
Sbjct: 188 LSQKRIIKKAIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFVELKTDNF--K 245

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQG 304
           I   N E+   Y KN  +Y + E R    +   N+++A      L    + F ++A+EQ 
Sbjct: 246 IHCENKEIYDWYIKNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQS 305

Query: 305 KSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
                   D  +G  S + IPD        +L KK   + VI     ++I  ++  +   
Sbjct: 306 TDPISSKKDGDIGWISIDLIPD---EIKHANLNKKNQISDVIPFHNEFLIVKLNETQIGT 362

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV   I  Q++  K+ +   E   ++   L       +I R  K  +I +   D+
Sbjct: 363 QKKIYEVFDSIKKQIKQKKSLDLYNELKNKISNNLKN--DPGKIERILKENNILIQETDW 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDR 477
             K    K V  IP  +Q +F   +F KD  +    H + L       ++IK+      +
Sbjct: 421 FDKKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQ 479

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             E V  ++ K  + +K  +E   K+ +++ + ++       + K           I+R 
Sbjct: 480 HFENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQG---REKLFKQSNLYFTDPEIISRY 536

Query: 538 DNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVGPVQEKDK--FI 591
           D           S VFS P             +   ++++  +         EK+K   +
Sbjct: 537 DL------SAITSIVFSLPHPQKGKKIYTLYNDKNKNFIIISLEKVYNTNFSEKEKNVIL 590

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVT 617
            YL++   + + +S++  L+ +  + 
Sbjct: 591 EYLSRHNTEIIFNSILKDLREKSIIK 616


>gi|15617076|ref|NP_240289.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386976|sp|P57550|PPID_BUCAI RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
 gi|25403639|pir||G84985 peptidylprolyl isomerase (EC 5.2.1.8) [imported] - Buchnera sp.
           (strain APS)
 gi|10039141|dbj|BAB13175.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 623

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 116/626 (18%), Positives = 242/626 (38%), Gaps = 37/626 (5%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
            + + K  L V+ +  ++  +S  +        + +V  +K+ F+ F   +  E     +
Sbjct: 10  NSIIVKFILGVIILSLILSTISIYINRDF-EKYIATVNGEKISFNLFKKMYFIEREKQKK 68

Query: 70  KIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLF 125
            +G      +     +      +L  L++   L+Q+ +++  LE +   +   I  SP+F
Sbjct: 69  ILGKNFFKFSHNENFTKETYNYVLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIF 128

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
             K+NKFS + +++ L        EYI+   K ++  +++                  + 
Sbjct: 129 Q-KNNKFSKERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNIIKL 187

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
             + R +   ++         + +N     +F+K +DN+  PE  +I+++         K
Sbjct: 188 LSQKRIIKKAIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFVELKTDNF--K 245

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQG 304
           I   N E+   Y +N  +Y + E R    +   N+++A      L    + F ++A+EQ 
Sbjct: 246 IHCENKEIYDWYIRNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQS 305

Query: 305 KSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
                   D  +G  S + IPD        +L KK   + VI     ++I  ++  +   
Sbjct: 306 TDPISSKKDGDIGWISIDLIPD---EIKHANLNKKNQISDVIPFHNEFLIVKLNETQIGT 362

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV   I  Q++  K+ +   E   ++   L       +I R  K  +I +   D+
Sbjct: 363 QKKIYEVFDSIKKQIKQKKSLDLYNELKNKISNNLKN--DPGKIERILKENNILIQETDW 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDR 477
             K    K V  IP  +Q +F   +F KD  +    H + L       ++IK+      +
Sbjct: 421 FDKKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQ 479

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             E V  ++ K  + +K  +E   K+ +++ + ++  K      K           I+R 
Sbjct: 480 HFENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQGRKKLF---KQSNLYFTDPEIISRY 536

Query: 538 DNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVGPVQEKDK--FI 591
           D           S VFS P             +   ++++  +         EK+K   +
Sbjct: 537 DL------SAITSIVFSLPHPQKGKKIYTLYNDKNKNFIIISLEKVYNTNFSEKEKNVIL 590

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVT 617
            YL++   + + +S++  L+ +  + 
Sbjct: 591 EYLSRHNTEIIFNSILKDLREKSIIK 616


>gi|311087368|gb|ADP67448.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           JF99 (Acyrthosiphon pisum)]
 gi|311087867|gb|ADP67946.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           JF98 (Acyrthosiphon pisum)]
          Length = 623

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 116/626 (18%), Positives = 241/626 (38%), Gaps = 37/626 (5%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
              + K  L V+ +  ++  +S  +        + +V  +K+ F+ F   +  E     +
Sbjct: 10  NRIIVKFILGVIILSLILSTISIYINRDF-EKYIATVNGEKISFNLFKKMYFIEREKQKK 68

Query: 70  KIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLF 125
            +G      +     +      +L  L++   L+Q+ +++  LE +   +   I  SP+F
Sbjct: 69  ILGKNFFKFSHNENFTKETYNYVLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIF 128

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
             K+NKFS + +++ L        EYI+   K ++  +++                  + 
Sbjct: 129 Q-KNNKFSKERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNIIKL 187

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
             + R +   ++         + +N     +F+K +DN+  PE  +I+++         K
Sbjct: 188 LSQKRIIKKAIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFVELKTDNF--K 245

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQG 304
           I   N E+   Y +N  +Y + E R    +   N+++A      L    + F ++A+EQ 
Sbjct: 246 IHCENKEIYDWYIRNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQS 305

Query: 305 KSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
                   D  +G  S + IPD        +L KK   + VI     ++I  ++  +   
Sbjct: 306 TDPISSKKDGDIGWISIDLIPD---EIKHANLNKKNQISDVIPFHNEFLIVKLNETQIGT 362

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV   I  Q++  K+ +   E   ++   L       +I R  K  +I +   D+
Sbjct: 363 QKKIYEVFDSIKKQIKQKKSLDLYNELKNKISNNLKN--DPGKIERILKENNILIQETDW 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDR 477
             K    K V  IP  +Q +F   +F KD  +    H + L       ++IK+      +
Sbjct: 421 FDKKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQ 479

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             E V  ++ K  + +K  +E   K+ +++ + ++  K      K           I+R 
Sbjct: 480 HFENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQGRKKLF---KQSNLYFTDPEIISRY 536

Query: 538 DNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVGPVQEKDK--FI 591
           D           S VFS P             +   ++++  +         EK+K   +
Sbjct: 537 DL------SAITSIVFSLPHPQKGKKIYTLYNDKNKNFIIISLEKVYNTNFSEKEKNVIL 590

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVT 617
            YL++   + + +S++  L+ +  + 
Sbjct: 591 EYLSRHNTEIIFNSILKDLREKSIIK 616


>gi|85858466|ref|YP_460668.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB]
 gi|85721557|gb|ABC76500.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB]
          Length = 533

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/536 (16%), Positives = 204/536 (38%), Gaps = 34/536 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG---SSTVVSVGRQKVPFSSFI 57
           MLE++RK ++ W+ K  L ++ V F+         + +G   S TV  V  +++  +   
Sbjct: 1   MLELMRKHAKNWLMKFLLGMIIVVFIF-----YFGTRTGKEKSETVAIVDGKEIALAEVQ 55

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             +        ++ G  +  E  + + L +  LD+L++ A + Q   ++ L A    V  
Sbjct: 56  KEYSNLAEFYRRQYGGSLTDEMLKGLELKQNALDSLIAQAIIMQKAGELNLTATDDEVRN 115

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   D  F+  ++   L    +  +E+     +MLS   +  +    ++ S+ 
Sbjct: 116 FIMAYPAFQR-DGTFNEKIYQQMLRLNRMTPEEFEASQQRMLSAAKLEQLIQEAVKVSDQ 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +     F  E   + Y++           PS   L  + +++ + +R PE  +I  + F
Sbjct: 175 EVFDFFSFQNEQIKISYLMFKPADFKGAISPSRKDLETYLKEHGNEFRVPEQMQIKALFF 234

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFS-----PEIRTVEQLVFPNQKEA--------- 283
              +   K +I   ++   YE+++ ++       P ++ V+  +     +          
Sbjct: 235 PGRDFAGKADIPESDIVDYYERHRSEFAQKGGKAPSLKEVKPRIINELAKISGMAAAAEQ 294

Query: 284 -DEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
             +A  ++ + + F   A +      +    +L +  + +      +  +  L KK + +
Sbjct: 295 AKKAHDTIYQEENFDSYAAQNNLKTVTTDFFTLNNIPQPFSKVSDFSKIVADL-KKDEIS 353

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
            V+    GY    V + K S+    +++++++A +    +A  + ++        L  G 
Sbjct: 354 KVLSDEEGYFFIKVGSRKSSYIPELKDIEQEVAKRYTEMEARNRCRKAADAALGRLKKGE 413

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           S+  I++  K+   +      +G    G  +  +   +QL   ++   +           
Sbjct: 414 SLVRIAQENKLAPAE------SGFFKPGAAIPGLDANQQLSMALYQLSESNPFPDQTLEI 467

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           +  +  +Q KE         E    ++K+    +K  E   +          KEG+
Sbjct: 468 NNGFAIIQFKERSKIDTTDYEAKKENLKQLLLMMKRNEYFMTWLENTKAAMIKEGR 523


>gi|219682383|ref|YP_002468767.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|219622116|gb|ACL30272.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|311086780|gb|ADP66861.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           TLW03 (Acyrthosiphon pisum)]
          Length = 623

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 116/626 (18%), Positives = 240/626 (38%), Gaps = 37/626 (5%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
              + K  L V+ +  ++  +S  +        + +V  +K+ F+ F   +  E     +
Sbjct: 10  NRIIVKFILGVIILSLILSTISIYINRDF-EKYIATVNGEKISFNLFKKMYFIEREKQKK 68

Query: 70  KIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLF 125
            +G      +     +      +L  L++   L+Q+ +++  LE +   +   I  SP+F
Sbjct: 69  ILGKNFFKFSHNENFTKETYNYVLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIF 128

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
             K+NKFS + +++ L        EYI+   K ++  +++                  + 
Sbjct: 129 Q-KNNKFSKERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNIIKL 187

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
             + R +   ++         + +N     +F+K +DN+  PE  +I+++         K
Sbjct: 188 LSQKRIIKKAIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFVELKTDNF--K 245

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQG 304
           I   N E+   Y +N  +Y + E R    +   N+++A      L    + F ++A+EQ 
Sbjct: 246 IHCENKEIYDWYIRNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQS 305

Query: 305 KSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
                   D  +G  S + IPD        +L KK   + VI     ++I  +   +   
Sbjct: 306 TDPISSKKDGDIGWISIDLIPD---EIKHANLNKKNQISDVIPFHNEFLIVKLDETQIGT 362

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
                EV   I  Q++  K+ +   E   ++   L       +I R  K  +I +   D+
Sbjct: 363 QKKIYEVFDSIKKQIKQKKSLDLYNELKNKISNNLKN--DPGKIERILKENNILIQETDW 420

Query: 421 AGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDR 477
             K    K V  IP  +Q +F   +F KD  +    H + L       ++IK+      +
Sbjct: 421 FDKKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQ 479

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             E V  ++ K  + +K  +E   K+ +++ + ++  K      K           I+R 
Sbjct: 480 HFENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQGRKKLF---KQSNLYFTDPEIISRY 536

Query: 538 DNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVGPVQEKDK--FI 591
           D           S VFS P             +   ++++  +         EK+K   +
Sbjct: 537 DL------SAITSIVFSLPHPQKGKKIYTLYNDKNKNFIIISLEKVYNTNFSEKEKNVIL 590

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVT 617
            YL++   + + +S++  L+ +  + 
Sbjct: 591 EYLSRHNTEIIFNSILKDLREKSIIK 616


>gi|189426095|ref|YP_001953272.1| hypothetical protein Glov_3046 [Geobacter lovleyi SZ]
 gi|189422354|gb|ACD96752.1| conserved hypothetical protein [Geobacter lovleyi SZ]
          Length = 531

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 87/534 (16%), Positives = 189/534 (35%), Gaps = 40/534 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML++IRK   + V K   V++ + F+     +WG  D     S +     V R  +   +
Sbjct: 1   MLDVIRKKKESVVIKAVFVIIVLSFIGTIFLVWGKGDEGMGRS-AGYAAKVDRTTISLEA 59

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           + N+++       Q  G     E  + + L ++ +D L+    + +  +  G+      +
Sbjct: 60  YQNAYQNMAETYRQIFGANFTPELEKQLNLRQQAIDRLIDSTLIIKAAKSQGVSVSKEEI 119

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              IA    F  ++  F   ++   L    I    + +   + L         +  +  S
Sbjct: 120 SAAIAGMSAFQ-QNGSFDFGLYQQMLKANRITPDAFEESKKRELLIEKTRKAVMDKVVIS 178

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +    +      +   + Y   +   V A     +A L  +  K  + +++PE   +S+ 
Sbjct: 179 DDEALKQFHKEQDKLELSYASFSAADVSAEVKLGDADLQDYLTKNAEKFKSPEKIALSWF 238

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           + +   +     ++ +E ++ Y KN ++Y   +   +       + +AD   Q   K   
Sbjct: 239 VLENSGQSHVQAVTAEEQESFYRKNMDRYVDKDNAPLPYEQVKERVKADAQRQKAAK-AL 297

Query: 296 FIQLAEEQGKSLSDISLGSFS-------------------KEYIPDVSLADSIFSLAKKG 336
           + + A+   +++    LG  +                        + +L    F L K+G
Sbjct: 298 YEKAADTLFQNIKSGDLGLVAAKLGAKTQDTPLFSANAAPAALAGETALLKKAFEL-KQG 356

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           +    +  + G  I  V   K +      +V+  +  Q+R  KA+E  K+     ++ LA
Sbjct: 357 ELGGPVETAKGIYIFKVKEKKAAELPPLAQVRTTVEQQLRALKAAELAKQKAVEAQKQLA 416

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
                           + L      G + KG ++  I   + L+ +VF      +     
Sbjct: 417 G-----------NGAGLKLQATPAFGYNSKG-DLPGIGNSKPLMEKVFELTTAGATPSEP 464

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
            L    +  V++K+   A          +VK+     K  E + +   +L  + 
Sbjct: 465 MLVGNRWYAVRLKQRNAAPQADFAPRKDEVKRQLLPAKQEEALRAWLKELRSKA 518


>gi|294669107|ref|ZP_06734191.1| peptidyl-prolyl cis-trans isomerase D [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308921|gb|EFE50164.1| peptidyl-prolyl cis-trans isomerase D [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 566

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 100/592 (16%), Positives = 218/592 (36%), Gaps = 57/592 (9%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           AKI L ++ + F+ +G S    +  GS  +V VG +K+   +   + ++E          
Sbjct: 12  AKIMLGLIALTFIGFGAS--TVAAPGSDYIVKVGDEKISTQNVQAAVREE---------- 59

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                    +  ++  L  L   A L +    +G+     ++   I     F  ++ +F+
Sbjct: 60  --------GLESNQDALTVLTDRAYLYEGARAMGINVSLEQLKQVIMDDKGFQDENGRFN 111

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
              F + LA+ G+ E + I+         +V  +   G   S+  L++  R     R + 
Sbjct: 112 EQKFRNFLAQSGMTEDQLIEKLRHQFELQNVANLAANGNIVSSQQLERIARLMQAEREIR 171

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
             V++ R+  A     +A L  +++K K  Y  P+  +  YI         +  +S +E+
Sbjct: 172 TAVVDPRNFAAGVKVDDAALKAYYDKDKSKYLIPKAVKFEYIELSAKTLADRQTVSEEEV 231

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKK-FIQLAEEQ 303
           +  + + +    +   + V  ++F           + EA++     K     F  LA++ 
Sbjct: 232 KKAFAEQQS--SAQPKQEVSHIMFALPQGGDKAKIKAEAEKVLAEAKASPDNFAALAQKY 289

Query: 304 GKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            +      S  +LG   K          +I  L  KGD   V   + G+ I  ++N +  
Sbjct: 290 SQDAATAQSGGALGVVDKSSALPEEFKAAIAKL-NKGDIALVESTA-GFHIVRITNTQ-- 345

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIVSIDLPLV 418
              SF E K  +  +++  KA + + +  + L +       S+   + +  +       +
Sbjct: 346 GQQSFDEAKASLEAELKQKKAQQALAQMRQTLSQTTFDFPDSLKAAAEKTGL------PI 399

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDR 477
               + +  +         + L  +F  +    K ++  +  G   WV +  E+      
Sbjct: 400 QSHNEWLSRQNAVQQNIPAEWLEVLFSDEVFKKKHNSDVITVGDTSWVLRATETREESTP 459

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             E+V   V+  +   ++A+    +A +L+ E  K GK           +      ++  
Sbjct: 460 AFEQVKEQVRTAYVNSESAKAAMEQAKKLLAELQKGGKP--------ELAWSEKETLSAS 511

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENG-LSYVVFKVTNSKVGPVQEKD 588
           D   +           + P +    + +  G  + ++ +V +SKV      +
Sbjct: 512 DARLRLSPQALAVLAKAHPTDGKPAYALLEGQPAPLLVEVLSSKVQKADADE 563


>gi|322434836|ref|YP_004217048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX9]
 gi|321162563|gb|ADW68268.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX9]
          Length = 662

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 105/641 (16%), Positives = 222/641 (34%), Gaps = 61/641 (9%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-----------GRQKVPFSSFINSWK 61
              + L  + +  +  G+ D + S        +V             + V  +    +  
Sbjct: 19  FITVALGAMVITLV-PGIFDNVDSGGSGVNYATVHAPGLFGRFGGDSEPVLQTEVTRAAT 77

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           Q+L    QK+  ++         ++ ++   LV  A L    + +GL+     +  E+ +
Sbjct: 78  QQLE--QQKLPPML------MPYIESRVAQQLVQEAILKLEADRLGLQVADSDLLRELHQ 129

Query: 122 SPLFHG--KDNKF-SHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             +      + ++   D +++ +  +  +   ++     K +    +  +  GG+  S+ 
Sbjct: 130 GQIGQILFPNGQYIGDDAYMNFVQNQLNMTRGDFEILVKKEMEVARLQALITGGVTVSDN 189

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA--PEYKRISYI 235
            +  + R        DY V+ +  + A  +PS++ L  +F+  +  Y    PE ++++Y 
Sbjct: 190 AVRDSYRVSGTKVKFDYAVITSDTLRATVNPSDSDLQTFFKTNQARYATAVPESRKLNYF 249

Query: 236 LFDVHEKEK-KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE--------- 285
            F   +    K ++++ +LQ  Y  +  +Y   +   V  ++      AD          
Sbjct: 250 AFGADQIPGGKPQVTDADLQTYYNAHLAQYQVKDQAKVRHILIAVPAGADARTDAAAKAK 309

Query: 286 ---AFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
                + +K G  F  LA     + G   +   LG  S           + FSL K G  
Sbjct: 310 ADDLLKQIKAGGNFADLASKNSDDPGSKANGGELGFLSPGQTV-PEFDKASFSL-KPGQT 367

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
           + VI   FGY I  V   + + T    EVK +I   +   K         K L +  A  
Sbjct: 368 SDVIKTKFGYHILQVEERQNAHTKPLNEVKAEITPIVEQQKFGNAEAAYAKSLSDE-ARK 426

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
             +D+ +    + +     V   G       V  +     LL + F          +V+ 
Sbjct: 427 NGIDKTAAAHGLHATTTDFVGKDGV------VPGVSDSTALLAQAFTTTK-KGDPISVST 479

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
            DG +   Q+ +         +   + +  D++  K  + ++ K N+L    +KE  +  
Sbjct: 480 GDG-FAIFQVVDIQAPHAPTFDAYKSHILDDYRAEKVPQLLNEKLNKLDAR-AKELNDLH 537

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSYVVFKVT 577
                L   + +++ + +           G     F      V   PI  G + +V  VT
Sbjct: 538 KAAAELNIPVKSSDLVGKDGQVPDLGAMSGPGAPAFDLAKGTVSN-PINTGSNGIVLVVT 596

Query: 578 NSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQY 614
           + +     +           L     +++    +  L  +Y
Sbjct: 597 DKQEPSADDIAKNFTATREGLLNERREEVFRLYLGTLTEKY 637


>gi|253700332|ref|YP_003021521.1| hypothetical protein GM21_1709 [Geobacter sp. M21]
 gi|251775182|gb|ACT17763.1| conserved hypothetical protein [Geobacter sp. M21]
          Length = 526

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/523 (15%), Positives = 184/523 (35%), Gaps = 38/523 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML I+RK  ++ + KI  VV+ + F+     +WG      +        +V   K+    
Sbjct: 1   MLGIMRKYKQSILIKIVFVVIVLSFVGTIFLVWGRGGEGSADGPGGYAATVDGTKISMDD 60

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F  ++ +   +  Q  G  +  E  + +GL K  + ++V      +  + +G++ +   V
Sbjct: 61  FQKNYYRTRNLYEQIYGRSLTPEMEKQMGLKKTTIGSMVDNVLTLKEAKKMGIKVNKDEV 120

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EIA+ P F   +  F  +++   L    +  KE+ +   + +               +
Sbjct: 121 AAEIAKIPSFQN-NGAFDFNLYQQTLKANRVTPKEFEETQEQDILVQKARNKVKEKATVT 179

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +  + Q  +   +  ++ Y+  +   V      ++A L  + + ++  ++ PE   I+Y 
Sbjct: 180 DADVMQEFKKQNDKVNLQYVSFSPADVKGSIKLTDAELNVYLQDHQAQFKTPEQVSIAYT 239

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKY--------------FSPEIRTVEQLVFPNQK 281
           L        K+ ++ +E Q  Y+KN ++Y               +       +      +
Sbjct: 240 LVSPAALAAKVSVTPEEAQNYYQKNIDRYQGKGGILPFSEVKDQATADAQKAKAAKEAYE 299

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDF 338
           +A E     +        A+  G  +    L +    +     ++ L    F+L K+G+ 
Sbjct: 300 KAAETANKFRSQGNLDAAAQALGGKVEKTPLFTAQAPAAAIAGEIELVTRAFAL-KQGEL 358

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
              +  + G  +  V + KPS      +V+  +  ++   K +E  K+  +   + LA G
Sbjct: 359 GGPVETAKGIYLLQVLDKKPSVVPPLAQVRAQVEQKLLEVKGAEVAKKKAEEALQQLAKG 418

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
                                  G    G  +  +    +L+   F              
Sbjct: 419 -------------GAAAKETGNFGYSPAG-AIPTVGTSPELMEAAFALTPASPVAKQPVK 464

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
               +  V++K  + A      +    +K+     K  +E+  
Sbjct: 465 VGERWYAVKLKNRVEAPTTDFAKASATIKQALLPKKQQDELDK 507


>gi|295698384|ref|YP_003603039.1| ppic-type ppiase domain protein [Candidatus Riesia pediculicola
           USDA]
 gi|291157251|gb|ADD79696.1| ppic-type ppiase domain protein [Candidatus Riesia pediculicola
           USDA]
          Length = 622

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 102/625 (16%), Positives = 246/625 (39%), Gaps = 35/625 (5%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINSWKQE----LGMISQ 69
           K   +++ +   + G+         S   ++ +  +++    F  ++++E    L  + Q
Sbjct: 3   KAISLMIILSIFMTGVGSYFLGNENSKKYIIKINGEQIHQDQFDQAFQKEKYFFLKNMHQ 62

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
           +  +  + +   +  +  ++L+ L+    L Q+   +G++    ++  EI    +F  ++
Sbjct: 63  EFLWKDHDQDLENF-IRVQVLNKLIQETLLSQYSMKLGIKVSEDKIKEEIRNLSIFQ-EN 120

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
            KF    + S L R  I+ K       K      V+  +            +  +F F+ 
Sbjct: 121 GKFDKRKYKSFLLRNQISGKTLSQEIKKNFLTKKVMQSYFLDEFLLPSESLEYAKFMFQK 180

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           R +  + L       + + S   +  +++ Y D + +    RISYI  D+  + + + + 
Sbjct: 181 RKIQTLTLPILQYQKLQNVSEEEMEAYYQNYPDQFLSSRKARISYIKLDIESQYENLNLK 240

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL-- 307
            +E    Y+KNK+ + +P       +   + K+A+   + L +G  F +LA++       
Sbjct: 241 EEE-FEFYKKNKKFFTNPPKNYYSMIQLDSIKDAELMIEKLSQGFSFEELAKKFSTDPFS 299

Query: 308 --SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
              + S+G   KE++P V ++    +L K G  + +I     Y+I  +         +F 
Sbjct: 300 AKKNGSIGWIEKEFLPQVIVS---ANLKKIGQISKIIEFEGKYLIFRLDRSINKSYKTFL 356

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           E K +I + +  +K+SEK  +  + + E +   +S D + + +K   + +   D+   + 
Sbjct: 357 ESKSEIHDILLKSKSSEKFYKIREFILEEIKENSS-DLLLKTQKKFQMKIYRTDWFENEN 415

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDH-----TVALPDGSYMWVQIKESIPARDRKLE 480
               +     K+ +  +   +D      +      V +       ++I++      + + 
Sbjct: 416 LPNSIDFQEVKKFIFSQNINQDFTQKNQNKKNIGIVEINKNLLFIIRIEDYCSEFVQPIH 475

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD---IGKNLGASLLTTNQINRM 537
            V   + K     K  E+V  K  + +L+  +  +N        +    S      I+R 
Sbjct: 476 LVKEKIFKLISFRKAYEKV-EKDGKFILDQLRNDQNVNKKTFFSEIGKISFQNEKTISRR 534

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFP----IENGLSYVVFKVTNS--KVGPVQEKDKFI 591
           + +   F    + Q F+  +   +        +   + ++ K+T+   +    +E +   
Sbjct: 535 EIDRSSF----LHQAFNMSISNRENPSYCMIRDGNQNLIIIKLTDIIREYPSTKEIELAS 590

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSV 616
           S + +  N  +L+S+   L S   +
Sbjct: 591 SEVLRNFNFIVLESLFFNLFSHAKI 615


>gi|294788519|ref|ZP_06753761.1| putative peptidyl-prolyl cis-trans isomerase [Simonsiella muelleri
           ATCC 29453]
 gi|294483396|gb|EFG31081.1| putative peptidyl-prolyl cis-trans isomerase [Simonsiella muelleri
           ATCC 29453]
          Length = 609

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 95/648 (14%), Positives = 233/648 (35%), Gaps = 63/648 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   I K   T  A++ L ++ + F+ +G S   F  S +  +V +G Q +      N+ 
Sbjct: 5   MFASIEKHRTT--AQVLLALIGISFIGFGASQFSFG-SNNQYIVKIGDQIITRYQLDNAV 61

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +                  A      + +   L++ A L +  + +GL      +   I 
Sbjct: 62  R------------------ANQGATREAVFRQLMNRAYLTEGAKQLGLSISETELKQSIV 103

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +  FH  + KFS ++F   LA  G++E+++++   + L    + G  +G    ++  + 
Sbjct: 104 NNKNFHDANGKFSTELFKQILASNGLSEQQFLESERETLLLESI-GKILGSNVVADSQVA 162

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q        R +  + +N +   +     +A L ++++  + +Y  P+  +  ++ F   
Sbjct: 163 QFLNSTMAMRKIRNVGVNPQAFESKVKIDDASLKKFYDANQKSYTLPQAVQFEFVRFSPQ 222

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---NQKEADEAFQSLKKGK--- 294
              +K  +S++E++    +   +  S   R +  ++ P   N+ +A E  Q + K     
Sbjct: 223 TLAEKETVSDEEVKQA--QQDVQNSSTNKREIAHILIPFGSNKDKAKEEAQKIAKEAQAN 280

Query: 295 --KFIQLAEEQGKSLSDISLGSF-----SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             KF +LA++  +               ++  + + +   + F + + G  + V+  +FG
Sbjct: 281 PDKFAELAKKYSQDSDSKDKSGIIGEFSAQGNLVNDAFKKAAFGV-ESGGVSDVVESNFG 339

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISR 406
           Y I    N+  +        +       ++ KA +   +  + L       + S+ + + 
Sbjct: 340 YHIIRAKNLGNATASDDTAARD----AAKLKKAQQTYTKLREELSAAAFDDSGSLKKAAE 395

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD-DPLSKDHTVALPDGSYMW 465
           +  +                    A IP    ++  +F  D      +      DG+  +
Sbjct: 396 KLGLTV----QTHSEWLTRDNAPAAKIPN--AVVDALFSDDVFDKKHNSEAITVDGTTWF 449

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V+  ++     +  + V   VK D+   ++A   + +A +++ E           GK L 
Sbjct: 450 VRATQTRQQTVQAFDAVKERVKGDFVRSESARLATDEAKKILAEL--------QAGKMLA 501

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
            +     +++    +  F      + + + P      + + + L         +      
Sbjct: 502 LNWSPVQEVSPEQAQGNFSPEAYANFMKTIPKNGKPAYVLIDNLGAPQLIEVQTVKQAAA 561

Query: 586 EKDKFISYLTQMM-----NKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
              + +S + Q+M        + ++ +  L            +    +
Sbjct: 562 ADVETLSTVKQIMLPVTERNAMAEAFMDNLSKIVKTEQGSEKVTDATE 609


>gi|254230430|ref|ZP_04923809.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sp. Ex25]
 gi|151937031|gb|EDN55910.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sp. Ex25]
          Length = 273

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 116/258 (44%), Gaps = 5/258 (1%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
           +   KI L ++ + F+  G+   + S   +++   VG  ++P   F  +++ E   +  +
Sbjct: 2   SIAVKIILGLIILSFVFAGVGSYIVS-GNNNSAAKVGNTEIPRGEFEMAYQNERNRMQAQ 60

Query: 71  IGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
           +G   +   ++ A      K +LD +++   LDQ  E +GL     +V   I   P F  
Sbjct: 61  LGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVRSMILDMPQFQS 120

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
            + +F  +++ + L R G +   + ++  + L R  ++             +    + + 
Sbjct: 121 -NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQNSEFILPGEVQAEGKLFT 179

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
           + R +  I ++        + ++  + Q+++   DN+  PE  +++YI       ++++ 
Sbjct: 180 QTRDIRTIKIDLAEFAKNIELTDEEIQQYYKANPDNFTRPEQVKVAYIELSAEALKEQVN 239

Query: 248 ISNDELQAEYEKNKEKYF 265
           +S+ E++  Y+++ ++ F
Sbjct: 240 VSDAEVKKYYDEHLKQIF 257


>gi|257455225|ref|ZP_05620460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter
           aerosaccus SK60]
 gi|257447187|gb|EEV22195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter
           aerosaccus SK60]
          Length = 622

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 98/637 (15%), Positives = 220/637 (34%), Gaps = 36/637 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +E +R   + W+ K  LV+  +P  I G    + S    + V  V    V  ++      
Sbjct: 1   MESLRNFLKGWMGKALLVLFLLPLAITGFESIVRSGDDPNAVAKVAELNVDNATLQTMIN 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                + +++    ++    S  L +++L NL+    +      +G       +   +  
Sbjct: 61  NRRETLLEQVNG--DASLLNSDKLREQMLHNLIDRYLIINQANQLGFTVSDATITQMLMA 118

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
              F     KFS+++F S L   G+ +++  D   + L  T      +     +   +D+
Sbjct: 119 EKTFQDASGKFSNELFASYLTSRGMTKEQLFDSVRQDLLVTAFSRGIINTGIFAQGSIDK 178

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                 E+R V  + L+          +   +  +++K +   ++ +   ++Y+  + + 
Sbjct: 179 LMSMQSESRPVQVLRLDWHSFAPQVQVTPQEIASYYQKNQATLKSSDMVDLTYLELNKNA 238

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKF 296
                  +  ELQ +Y+   +   +     +  ++  N  +A     SLK         F
Sbjct: 239 LP-VAAPTAQELQQQYQSYLKNSNNQTEYELAMILM-NGSQAQATLTSLKSKLDANQADF 296

Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
             LA++  +         ++G  ++   P D     +     K G  T  I  ++GY + 
Sbjct: 297 AALAKQYSQDEGSKNDGGNIGPITQSMFPNDYDTIMTQIKTLKVGQVTSPIKTNYGYHLF 356

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            +  I      + + +   +  Q+   K     ++   ++      G ++ E++ R K+ 
Sbjct: 357 KLVKINGQTPPTIESLAPVLTEQIMAQKREAAYQDLIGKINNDAVAGATITELANRYKLT 416

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-YMWVQIKE 470
           +  +                +   +  ++   F          +V +      +W+Q   
Sbjct: 417 AKSIKNYPKTNNS-------SALSQPAIVAAAFEPLALQEGSVSVGIDVSDKVVWLQSTN 469

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             P++     E    +K      K A+ ++      +    K+  +        G     
Sbjct: 470 HRPSKLMTQAEAEPVIKAKLIEEK-AKSLALAEANAIAAKVKQANSIAA----AGVPFQD 524

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVFKV-TNSKVGPVQ 585
              + R D++      D  +  FS P       V   P  +G S +V  V TN       
Sbjct: 525 LGIVTRQDSK---LSDDERAVAFSQPAVNNQLAVMTRPTMSGASVIVGGVITNDNAQITP 581

Query: 586 EKDKFISYL-TQMMNKDLLDSVIAYLKSQYSVTVHDN 621
           +  +  + +  + + +   +  +AYLKS   VTV   
Sbjct: 582 QVKQQTAQIVRENIGQSQFEDYLAYLKSITKVTVKPQ 618


>gi|197118887|ref|YP_002139314.1| hypothetical protein Gbem_2510 [Geobacter bemidjiensis Bem]
 gi|197088247|gb|ACH39518.1| conserved hypothetical protein [Geobacter bemidjiensis Bem]
          Length = 526

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/523 (15%), Positives = 182/523 (34%), Gaps = 38/523 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML I+RK  ++ + KI  VV+ + F+     +WG      +   +     V   K+    
Sbjct: 1   MLGIMRKYKQSILIKIVFVVIVLSFIGTIFLVWGRGGDKSANGPAGYAAMVDGTKISMDD 60

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F  ++ +   +  Q  G  +  E  + +GL K  + +++      +  + +G++ D   V
Sbjct: 61  FQKNYYRTRNLYEQIYGRSLTPEMEKQMGLKKATISSMIDNVLTLKEAKKMGIKVDKDEV 120

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EIA+ P F   +  F   ++ + L    +  KE+ +   + L               +
Sbjct: 121 AAEIAKIPSFQN-NGAFDFTLYQNTLKANRVTPKEFEETQEQDLLVQKARNKVKEKATVT 179

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +  L Q  +   +  ++ Y+  +   V      ++A L  + + ++  ++ PE   I+Y 
Sbjct: 180 DADLMQEFKKQNDKVNLQYVSFSPADVKGSIKLTDAELNVYLQDHQAQFKTPEQVSIAYT 239

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKY--------------FSPEIRTVEQLVFPNQK 281
           L        K+ ++ +E Q  Y+KN ++Y               +       +      +
Sbjct: 240 LVSPAALAAKVSVTPEEAQNYYQKNIDRYQGKGGILPFAEVKDQATADAQKAKAAKEAYE 299

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDF 338
           +A E  +  +        A+  G  +    L +    +     +  L    F+L K+ + 
Sbjct: 300 KAAETAKKFRAQGNLDAAAQALGGKVEKTPLFTAQAPAAAIAGETELVARAFAL-KQNEL 358

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
              +  + G  +  V + KPS      +V+  +  ++   K +E  K+            
Sbjct: 359 GGPVETAKGIYLLKVLDKKPSVVPPLAQVRAQVERKLLEVKGAEVAKKKA---------- 408

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
              +E  ++              G    G  +  +    +L+   F              
Sbjct: 409 ---EEALQQLSKAGAATKETGNFGYSPAG-AIPTVGTSPELMEAAFALTPANPVAKQPVK 464

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
               +  V++K  + A      +    +K+     K  EE+  
Sbjct: 465 VGERWYAVKLKNRVEAPTTDFAKASATIKQTLLPKKQQEELDK 507


>gi|68171424|ref|ZP_00544815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|67999166|gb|EAM85825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia
           chaffeensis str. Sapulpa]
          Length = 408

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 87/413 (21%), Positives = 184/413 (44%), Gaps = 17/413 (4%)

Query: 5   IRKASRTWVAKIFLVVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
           I   S+ +  K  L++L     F+ +G S    S +    +  +G +K+    + +++  
Sbjct: 3   IHMKSKAFFVKPLLIILVCSLVFIAFGASFFPGSFNNEKYIAKIGHEKLSLQDYTSAYHD 62

Query: 63  ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
           EL  I   +   +  E+     +    L+ L+    L +F + + L+     +   I   
Sbjct: 63  ELRYIQHVLNRPLTEEQIAQFNIKLSTLNKLIENKVLTKFADSLNLKVGENSILNHIKSI 122

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-----NL 177
             F  ++  F    F   L+  G+ E+ YI+   K    T ++     G + +       
Sbjct: 123 KFFQDENGNFDKTKFNIGLSNAGLTERLYINKLEKAFPITMLMSCLFSGTQNTYTQYHPE 182

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKRISYI 235
           L+ Q  +   + R++D I ++      I+ P+   L + +E+ +   N   PE + I Y+
Sbjct: 183 LIKQILQNLHQARTIDVIEISPTT-NDISVPNIDELKKLYEEKRKSGNLTFPESRVIEYV 241

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
             D      +  ++ +E+  + + ++      E R +  LVF  + EA+ A ++L +G  
Sbjct: 242 TIDHENFINQTNVTQEEIDNKIKADE----LDEQRDIFNLVFSTKNEAETALKALNEGTD 297

Query: 296 FIQLAEEQG-KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           F  +       +L +I+L +  K  +P+  + + +FSL K+G+ +P++H  FG+ I  + 
Sbjct: 298 FDSIVTNIAHTTLDNITLFNIVKNTLPN-DIRNQVFSL-KEGEISPILHSMFGWHIIKIK 355

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           NI    T    E+ + IA  ++  KA++ +  + + + + +  GTS+ EI+  
Sbjct: 356 NIHKISTKDLAELSEKIAQNIKKKKATDLLYTEIQAINDKINNGTSIQEIAES 408


>gi|39997188|ref|NP_953139.1| hypothetical protein GSU2090 [Geobacter sulfurreducens PCA]
 gi|39984078|gb|AAR35466.1| hypothetical protein GSU2090 [Geobacter sulfurreducens PCA]
 gi|298506201|gb|ADI84924.1| conserved hypothetical protein [Geobacter sulfurreducens KN400]
          Length = 527

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 98/535 (18%), Positives = 197/535 (36%), Gaps = 44/535 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML I+RK  ++ V K+   V+ + F+     +WG  +   +   SS  V V R K+ +  
Sbjct: 1   MLGIMRKYKQSPVIKVVFGVIVLSFIGTIFLVWGKGEGKLTP--SSYAVKVDRTKISYEE 58

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F  ++ +   +  Q  G  +  +  + + + K+ LD LV GA +     D+G++     V
Sbjct: 59  FQRTYYRLRDIYVQLYGPALTPDLEKQLNVKKQALDTLVEGALVRNAARDMGIKVSKDDV 118

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              IA  P F   +  FS + +V  L    I  KE+ +     L               S
Sbjct: 119 QQAIAAMPSFQ-VNGAFSFNQYVQVLKANRIAPKEFEEGQKDELMIKKAQDQIKSRATVS 177

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +    +  R   +  ++ Y+  +   V A    ++  LT +  K +++++ PE   I+Y+
Sbjct: 178 DDEARELFRKRNDRLAISYVSYSPDDVKAEIKLTDQELTDFLAKNQNDFKTPEKISITYV 237

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK- 294
           + D   K   +E+S  ++QA Y+KN ++Y  P        +   +++  E  +  K G+ 
Sbjct: 238 MVDP-LKVGGLEVSEADIQAWYQKNIDRYQGPAGIL---PLAEVKEKVREDARRFKAGQH 293

Query: 295 ----------------KFIQLAEEQGKSLSDISLGSFSKEY---IPDVSLADSIFSLAKK 335
                               +A   G    + +L +  +       +  L    F L K+
Sbjct: 294 AYELAAAAINKNKATGDIGAVARALGAKTEETALFTAQQPAPALAGETELIRRAFIL-KE 352

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G+    +    G  +  +   KP+      +++  +  + +  KA +  K+  +  +  L
Sbjct: 353 GELGGPVETKKGIYLIKIKERKPAEVPPLAQIRAQVEEKAKTAKAVDLAKKKAEEAQAKL 412

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           A G S            + L        D KG  +  +    +L+   F           
Sbjct: 413 AKGDS----------TGLTLRDSGPFAFDAKGN-IPTVGASPELMEAAFKLTTAAPAPKE 461

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
                  ++  ++KE               +K++    K  +E      +L  + 
Sbjct: 462 PIRVGARWIAFRLKERTELNAANFAAQKEKIKQEILPRKQDDEYRKWIEELRSKA 516



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/508 (12%), Positives = 145/508 (28%), Gaps = 67/508 (13%)

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
            +  Y +         D+     G     +L      +    +  V+  ++ N       
Sbjct: 52  TKISYEEFQRTYYRLRDIYVQLYGPALTPDLEKQLNVKKQALDTLVEGALVRNAARDMGI 111

Query: 207 DPSNAVLTQ------------------WFEKYKDNYRAPE-----YKRISYILFDVHEKE 243
             S   + Q                  + +  K N  AP+      K    I     + +
Sbjct: 112 KVSKDDVQQAIAAMPSFQVNGAFSFNQYVQVLKANRIAPKEFEEGQKDELMIKKAQDQIK 171

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
            +  +S+DE +  + K  ++        +  + +       E   + ++   F+   +  
Sbjct: 172 SRATVSDDEARELFRKRNDRLA------ISYVSYSPDDVKAEIKLTDQELTDFLAKNQND 225

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTV 362
            K+   IS+       + D           K G           +   ++   + P+  +
Sbjct: 226 FKTPEKISITYV----MVDP---------LKVGGLEVSEADIQAWYQKNIDRYQGPAGIL 272

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
              EVK+ +    R  KA +   E              +  ++R            +   
Sbjct: 273 PLAEVKEKVREDARRFKAGQHAYELAAAAINKNKATGDIGAVARALGAK------TEETA 326

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
                +   A+  + +L+ R F   +                 ++IKE  PA    L ++
Sbjct: 327 LFTAQQPAPALAGETELIRRAFILKEGELGGPVET--KKGIYLIKIKERKPAEVPPLAQI 384

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI---NRMDN 539
              V++  KT K  +    KA +   + +K        G + G +L  +       + + 
Sbjct: 385 RAQVEEKAKTAKAVDLAKKKAEEAQAKLAK--------GDSTGLTLRDSGPFAFDAKGNI 436

Query: 540 ENKFFGYDGISQVFSGPVEM-VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ-- 596
                  + +   F           PI  G  ++ F++                 + Q  
Sbjct: 437 PTVGASPELMEAAFKLTTAAPAPKEPIRVGARWIAFRLKERTELNAANFAAQKEKIKQEI 496

Query: 597 --MMNKDLLDSVIAYLKSQYSVTVHDNL 622
                 D     I  L+S+  + ++  L
Sbjct: 497 LPRKQDDEYRKWIEELRSKAKIEINPAL 524


>gi|320107420|ref|YP_004183010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
           saanensis SP1PR4]
 gi|319925941|gb|ADV83016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
           saanensis SP1PR4]
          Length = 661

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 95/639 (14%), Positives = 210/639 (32%), Gaps = 44/639 (6%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDAL--FSVSGSSTVVSVGRQKVPFSSF---INSWKQELGM 66
            +  + +    +  +++ +       + +G     SV    +    F        QE+  
Sbjct: 14  VLFAVIIGAAILSMIVYLVPGLYEGVTNNGDGVYASVHEPGLMGRIFGDTEQITTQEVSR 73

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           ++Q +             L+++     ++ A  DQ    +GL      V  E+ +  L  
Sbjct: 74  LAQSLQQRSGYPAFYLPLLERQAQQMKIAWAIEDQEASRLGLLVSDEDVSAELHQGQLGQ 133

Query: 127 G--KDNKF-SHDVFVSRLAREGI--NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
                 KF   D +   +          ++     + + R  +      G+  ++  +  
Sbjct: 134 ILFPGGKFIGQDQYKQFVQNAAGVPTTADFEKEIKEDMERRRLRQFVTAGVNVNDNAVRS 193

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRISYILFDV 239
           A          DY +++   V      +++ L ++F   K  Y     E ++++Y+    
Sbjct: 194 AYLLSGTKVKFDYAMISPEDVKKNVTSTDSELQKYFNDNKARYAKAVAEARKVTYVAVAA 253

Query: 240 HEKEK-KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADEA 286
                 K ++S+ E+Q+ Y ++ ++Y   E   V  ++                 +A + 
Sbjct: 254 DSLPGGKPQVSDAEVQSYYSQHADQYKVEEQVRVRHILISVPPGADAKVDAAAKTKAQDL 313

Query: 287 FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
              ++ G  F  LA+              LG          +   +  +L K G  + ++
Sbjct: 314 LTKIRAGGNFADLAKANSDDPGSKGTGGELGWVKSNGQMVPAFQTAAMAL-KAGQTSDLV 372

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
              FGY I   +  + +      EV   I   +   KA+   +     L    A    +D
Sbjct: 373 KTQFGYHIIQATERQDAHVKPLTEVASQIRPMLEQQKAAAAEQSFVTALSNEAAK-QGLD 431

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
           + +    + +     +   G       V  +    QLL   F           VA  +G 
Sbjct: 432 KAAAAHHLTAQTTDYIAQDGV------VNGVADSSQLLQAAFAAKKG-DAPKAVATGEG- 483

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
               Q+ +  PA     +   + V  D+   +    + +K  +L  E +K+  + +    
Sbjct: 484 MAIFQVVDIQPAHAPTFDLWKSHVADDYAAEQVPTMMQAKLTKL-SERAKQLNDLKKAAV 542

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
            +   + T++ + R  N  +     G + V     +     PI+   S  V +V + +  
Sbjct: 543 EMNIPVKTSDLVGRDGNVPELGAMSGGASVAFTLAKGAVSAPIDASRSGAVLQVVDKQEP 602

Query: 583 PVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             ++     DK  + L +    ++    +  L  QY   
Sbjct: 603 TTEDIAKNFDKTKNDLLESKRNEVFALYMGTLMDQYKAK 641


>gi|225629761|ref|ZP_03787708.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225591385|gb|EEH12478.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 445

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 98/449 (21%), Positives = 211/449 (46%), Gaps = 24/449 (5%)

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           +Q  +  ++ R VD + +    V  I +P +  L   +E+ K ++  PEY+   YI    
Sbjct: 15  EQIYKSRYQTRVVDIVKITEDAVTNIPEPDDQALLDLYERNKSHFYYPEYRTAQYISLGQ 74

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298
              E +I+IS++E+    E+ + K      R +   +F  ++EA+ A ++ ++GK  F Q
Sbjct: 75  KYFEDQIKISDEEVDGIIEQQELK----NQRDIFNAIFSTKEEAETARRAFEEGKTSFEQ 130

Query: 299 LAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           + EE GK+ L +  + + +K+++P+  + + +F+L K G+ + V+  SFG+ I  V +  
Sbjct: 131 IVEEFGKAKLEETRVNNITKDFLPE-DVREKVFAL-KVGEVSEVLASSFGWHIVKVESAH 188

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
                   ++KKDI + +   K+ E+V +   ++   +  G+ ++EI     +    +  
Sbjct: 189 QISDEDLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSEIEEILSEYNLPIQTIGP 248

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           VD +GKD  G  V        L+  +F ++    K +   + D + + V+I + +P + +
Sbjct: 249 VDASGKDQSGNNVGD---SGDLISFIFSREKD-QKGYFKGVGD-AVVSVKIVDIVPPKLQ 303

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             EE      + W++    E +     ++ ++  ++     D+ +  G  L+   Q++R 
Sbjct: 304 SFEEGKALAVELWRSEFIKERMFKFGQEVAVQLREK----TDLEEIQGVELVKGQQMHRN 359

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
             + + + +  + ++F+         PI+  N +   V K  +S  G +   D     + 
Sbjct: 360 KVDQQNYPFSFVEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNMLDTGKRVMI 419

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                 L + +I+YL+S+Y V V+  ++ 
Sbjct: 420 -----SLKEQLISYLESKYKVEVNHAILD 443


>gi|225872709|ref|YP_002754166.1| peptidylprolyl cis-trans isomerase, putative [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793467|gb|ACO33557.1| peptidylprolyl cis-trans isomerase, putative [Acidobacterium
           capsulatum ATCC 51196]
          Length = 660

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 97/669 (14%), Positives = 237/669 (35%), Gaps = 67/669 (10%)

Query: 1   MLEIIRKASRTW--VAKIFLVVLFVPFLIWGLSDALFSVSGSSTV-VSVG---------- 47
           M+  ++K +R    V  I + V  V  +I  +     + S S  V  ++G          
Sbjct: 1   MIRFLQKDNRFVKAVFFIIISVACVTMVITLVPGIFDTQSSSGNVYATIGYGGPLGRFMP 60

Query: 48  -RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
            +  +  +      +Q    + Q+ G   +        +  ++   L+           +
Sbjct: 61  AQDTITMTE----VQQTAARMMQQQGLPDSM----MSFVIPQVGQGLIQQHVEMMEAHKL 112

Query: 107 GLEADHGRVWGEIARSPLFHG--KDNKF-SHDVFVSRLARE-GINEKEYIDHYTKMLSRT 162
           GL A+   V   +           + K+     +   ++    +  +++       +   
Sbjct: 113 GLHANDEDVRHFLHTGMWGQVLFPNGKYIGDQAYAELISEHFNMTREKFESEVKNAIVED 172

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            +  +  G +  S   + Q         +  Y VL++  +    +P++A L  +F++   
Sbjct: 173 RLRSLVSGAVTVSPEQVKQYYLQQGLKINFQYAVLDSNALRQTINPTDAQLQTYFKQNAG 232

Query: 223 NY--RAPEYKRISYILFDVHEKEKKI-EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            Y    PE + I YI F   +      ++++ E+Q  Y  ++++Y  PE   V  ++   
Sbjct: 233 RYAKAIPETRSIQYIAFQDSQIPGGAPQVTDAEIQQYYNAHQDQYKVPEEVKVRHILIQV 292

Query: 280 QK------------EADEAFQSLK--KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPD 322
            +            +A      LK   GK F +LA++          G    + K+ +  
Sbjct: 293 PQGAPAATVAAAKTKAQSVLDQLKQANGKNFAELAKKYSDDPGSKDQGGELGWVKQGMTV 352

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            +   +IF++   G  + ++   +G+ I  V +   + T +  +V+  I + +   K ++
Sbjct: 353 PAFDHAIFTMP-VGQISDLVRTQYGFHIIQVEDKHTAHTEALSDVRAQILSTLTQQKEND 411

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
                 ++L +  A    + + +    +       V       +G  +  +    +L+  
Sbjct: 412 AAASYAQQLAKE-AAANGLQKTAAAHHLSVTTSDSVQ------QGANLPNLSDSSKLVTA 464

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
            F      +     +  DG +   Q+     A     +   T +  D++  +    ++ K
Sbjct: 465 AFQAKQG-AAPQVASTGDG-FAVFQVSNITAAHAPTFDAYKTQILSDYRDDQLPALLARK 522

Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVK 561
            N+L  E +K   +     K + A+++T+  + R D   +    + ++  +F+     + 
Sbjct: 523 TNEL-AERAKNLNDLSKAAKLMNATVMTSGLVGRTDQVPEVGELEQVAPSLFTLQPGQI- 580

Query: 562 CFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYL----KSQ 613
              I  G S VV ++T  +     E     ++    L       + +  ++ L    + +
Sbjct: 581 SKAINTGRSGVVAQITARQEPDAAEIAAHSEQTREQLLDQQRNQMFEVFLSNLLEKYQKE 640

Query: 614 YSVTVHDNL 622
             + ++   
Sbjct: 641 GRIRINAKA 649


>gi|57167705|ref|ZP_00366845.1| conserved hypothetical secreted protein, putative [Campylobacter
           coli RM2228]
 gi|57020827|gb|EAL57491.1| conserved hypothetical secreted protein, putative [Campylobacter
           coli RM2228]
          Length = 495

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 104/512 (20%), Positives = 191/512 (37%), Gaps = 36/512 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  +  I++  +      FL WG  D  F+++ SS+V  VG +K+ ++ F 
Sbjct: 1   MLTWMQHHKKYLIVTIWISTIAFVGAGFLGWGAYD--FNLNRSSSVAVVGDEKINYNEFN 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + Q     +Q     +N E A+ +G++   L +LV    L  F +D+GL +    V  
Sbjct: 59  VRYNQIFNYYNQISNGGLNEESAKQLGIENAALSSLVENKLLLNFAKDLGLGSSENEVIQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +A +  F      F+  ++   L    I  KEY    +  +    +  +F   +  ++ 
Sbjct: 119 ALAETKAFQDPSGDFNKTIYYELLNANNITPKEYEKTLSNEIIIGKLEQIF--NLPQTDE 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L      YF   S++   L           +   L + + ++K++Y+  +   IS    
Sbjct: 177 ELKMLGASYFMQDSLNIAKLEQD--KENIKVNEEELKKLWNEHKEDYKTKKVYEISTYYL 234

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGKK 295
            V    +KI+ S  E     E NK KY     + +           D A   LK     K
Sbjct: 235 PVD--MQKIDDSKLEEFYNNENNKFKYKDFSGKIMSFEAAKKDVAKDYALAQLKNTANAK 292

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F++L E + K   D ++         DV       S AK GD         GY+I  ++ 
Sbjct: 293 FLELKEGKDKFQKDENITD------SDVYYPLEALSRAKNGDVLRPSEYQNGYIIIKLNK 346

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
             P  T +F E ++++       +A + ++E  K+  E  +               +I  
Sbjct: 347 TNPVRTKTFDEAREELMPIYISEQAKKNLEEKAKQNLENFSG-------------TNIGF 393

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PA 474
              D    D K   +         L  VF  D        V L +   +  +I +     
Sbjct: 394 VSRDTVRNDAKISNILNEAEFSYFLMNVFNSD---QNRSYVILNEDKAILYKINKQKLDM 450

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
              K ++  T + ++ +++K  E       +L
Sbjct: 451 NPEKFQQYRTMLNQNLQSLKANEMKQELIEEL 482



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 90/265 (33%), Gaps = 43/265 (16%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
              +SF+  KKD+A    + +        +  L+E        + I+  +    ++    
Sbjct: 264 GKIMSFEAAKKDVAKDYALAQLKNTANAKFLELKEGKDKFQKDENITDSDVYYPLEALSR 323

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G  ++  E                                 Y+ +++ ++ P R + 
Sbjct: 324 AKNGDVLRPSEYQ-----------------------------NGYIIIKLNKTNPVRTKT 354

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
            +E   ++   + + +  + +  KA Q +  +   G N   + ++   +    + I    
Sbjct: 355 FDEAREELMPIYISEQAKKNLEEKAKQNLENF--SGTNIGFVSRDTVRNDAKISNILNEA 412

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-DKFISYLTQM 597
             + F        VF+      + + I N    +++K+   K+    EK  ++ + L Q 
Sbjct: 413 EFSYFLMN-----VFNSDQN--RSYVILNEDKAILYKINKQKLDMNPEKFQQYRTMLNQN 465

Query: 598 M----NKDLLDSVIAYLKSQYSVTV 618
           +      ++   +I  LK  Y + +
Sbjct: 466 LQSLKANEMKQELIEELKKTYPIKI 490


>gi|305433211|ref|ZP_07402367.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter coli JV20]
 gi|304443912|gb|EFM36569.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter coli JV20]
          Length = 495

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 103/512 (20%), Positives = 188/512 (36%), Gaps = 36/512 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++  +      FL WG  D  F+++ SS+V  VG +K+ ++ F 
Sbjct: 1   MLTWMQHHKKYLVVTIWISTIAFVGAGFLGWGAYD--FNLNRSSSVAVVGDEKINYNEFN 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + Q     +Q     +N E A+ +G++   L +LV    L  F +D+GL +    V  
Sbjct: 59  VRYNQIFNYYNQISNGGLNEESAKQLGIENAALSSLVEDKLLLNFAKDLGLGSSENEVIQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +A +  F      F+  ++   L    +  KEY    +  +    +  +F   +  ++ 
Sbjct: 119 ALAETKAFQDPSGDFNKTIYYELLNANNMTPKEYEKTLSNEIIIGKLEQIF--NLPQTDE 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L      YF   S++   L           +   L + + ++K++Y+  +   IS    
Sbjct: 177 ELKMLGASYFMQDSLNIAKLEQD--KENIKVNEEELKKLWNEHKEDYKTKKVYEISTYYL 234

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGKK 295
            V    +KI+ S  E     E NK KY     + +           D A   LK     K
Sbjct: 235 PVD--MQKIDDSKLEEFYNNENNKFKYKDFSGKIMSFEAAKKDVAKDYALAQLKNIANAK 292

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F++L E + K   D ++         DV       S  K GD         GY+I  ++ 
Sbjct: 293 FLELKEGKDKFQKDENITD------SDVYYPLEALSRVKNGDVLRPSEYQNGYIIIKLNK 346

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
             P  T +F E K+++       +  + ++E  K+  E  +               +I  
Sbjct: 347 TNPVRTKTFDEAKEELMPIYISEQVKKNLEEKAKQNLENFSG-------------TNIGF 393

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PA 474
              D    D K   +         L  VF  D        V L +   M  +I +     
Sbjct: 394 VSRDTVRNDAKISNILNEAEFSYFLMNVFNSD---QNRSYVILNEDKAMLYKINKQKLDM 450

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
              K ++    + ++ +++K  E       +L
Sbjct: 451 NPEKFQQYRIMLNQNLQSLKANEMKQELIEEL 482



 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 87/265 (32%), Gaps = 43/265 (16%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
              +SF+  KKD+A    + +        +  L+E        + I+  +    ++    
Sbjct: 264 GKIMSFEAAKKDVAKDYALAQLKNIANAKFLELKEGKDKFQKDENITDSDVYYPLEALSR 323

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G  ++  E                                 Y+ +++ ++ P R + 
Sbjct: 324 VKNGDVLRPSEYQ-----------------------------NGYIIIKLNKTNPVRTKT 354

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
            +E   ++   + + +  + +  KA Q +  +   G N   + ++   +    + I    
Sbjct: 355 FDEAKEELMPIYISEQVKKNLEEKAKQNLENF--SGTNIGFVSRDTVRNDAKISNILNEA 412

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK-----FISY 593
             + F        VF+      + + I N    +++K+   K+    EK +         
Sbjct: 413 EFSYFLMN-----VFNSDQN--RSYVILNEDKAMLYKINKQKLDMNPEKFQQYRIMLNQN 465

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTV 618
           L  +   ++   +I  LK  Y + +
Sbjct: 466 LQSLKANEMKQELIEELKKTYPIKI 490


>gi|121613493|ref|YP_001000390.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167005333|ref|ZP_02271091.1| hypothetical protein Cjejjejuni_03670 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249349|gb|EAQ72309.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
           jejuni subsp. jejuni 81-176]
          Length = 496

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 98/514 (19%), Positives = 198/514 (38%), Gaps = 39/514 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++  +      FL WG  D  F+++ SS+V +VG +K+ FS F 
Sbjct: 1   MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             ++Q L   +Q     +  E A  +G+    L +LV    L  F +D+G+  +   +  
Sbjct: 59  TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++A +  F      F+  ++   L    +  K+Y       +    +  +F   +   + 
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF--NIPSKDE 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L      YF   ++    ++          +   L + ++++K++Y+  +   IS    
Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWDEHKEDYKTKKIYEISTYFL 234

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293
            V       +I + EL+  Y  ++NK KY     + ++     N+   D A   LK    
Sbjct: 235 SVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            KF+ L   +     D ++         DV     + + AK GD       + GY+I  +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + + P    +F+E ++++       +A + ++E  K        G  +  +SR     S+
Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472
            L             ++         L  VF  D        V + D   +  +I +   
Sbjct: 404 KL-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVIINDNKAILYKINKQKL 449

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                K E+  T ++++ + +K  E      ++L
Sbjct: 450 DMNSDKFEQYKTMLEQNLRNLKANELKQELVDEL 483



 Score = 57.7 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 97/262 (37%), Gaps = 19/262 (7%)

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
              ++      N+++    + KV + ++  +  +A   ++ ++        +DL      
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
            +  +    + + Y   LL +    D      +     +  Y+ V++ +  P R++  EE
Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
              +V   + + +  + +  KA   ++ +  +G +   + ++     +  +     D+E 
Sbjct: 358 AREEVLPMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKLSDKILNDSEF 415

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596
            +F  +    VF+        + I N    +++K+   K+        Q K      L  
Sbjct: 416 AYFLMN----VFNTDQNS--SYVIINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLRN 469

Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618
           +   +L   ++  LK  Y + +
Sbjct: 470 LKANELKQELVDELKKIYPIKI 491


>gi|86153477|ref|ZP_01071681.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843203|gb|EAQ60414.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 496

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 98/514 (19%), Positives = 197/514 (38%), Gaps = 39/514 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++  +      FL WG  D  F+++ SS+V +VG +K+ FS F 
Sbjct: 1   MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             ++Q L   +Q     +  E A  +G+    L +LV    L  F +D+G+  +   +  
Sbjct: 59  TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++A +  F      F+  ++   L    +  K+Y       +    +  +F   +   + 
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF--NIPSKDE 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L      YF   ++    ++          +   L + + ++K++Y+  +   IS    
Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293
            V       +I + EL+  Y  ++NK KY     + ++     N+   D A   LK    
Sbjct: 235 SVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            KF+ L   +     D ++         DV     + + AK GD       + GY+I  +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + + P    +F+E ++++       +A + ++E  K        G  +  +SR     S+
Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472
            L             ++         L  VF  D        V + D   +  +I +   
Sbjct: 404 KL-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVIINDNKAILYKINKQKL 449

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                K E+  T ++++ + +K  E      ++L
Sbjct: 450 DMNSDKFEQYKTMLEQNLRNLKANELKQELVDEL 483



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 97/262 (37%), Gaps = 19/262 (7%)

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
              ++      N+++    + KV + ++  +  +A   ++ ++        +DL      
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
            +  +    + + Y   LL +    D      +     +  Y+ V++ +  P R++  EE
Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
              +V   + + +  + +  KA   ++ +  +G +   + ++     +  +     D+E 
Sbjct: 358 AREEVLPMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKLSDKILNDSEF 415

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596
            +F  +    VF+        + I N    +++K+   K+        Q K      L  
Sbjct: 416 AYFLMN----VFNTDQNS--SYVIINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLRN 469

Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618
           +   +L   ++  LK  Y + +
Sbjct: 470 LKANELKQELVDELKKIYPIKI 491


>gi|157414981|ref|YP_001482237.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385945|gb|ABV52260.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747618|gb|ADN90888.1| Peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315931892|gb|EFV10847.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 496

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 98/514 (19%), Positives = 197/514 (38%), Gaps = 39/514 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++  +      FL WG  D  F+++ SS+V +VG +K+ FS F 
Sbjct: 1   MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             ++Q L   +Q     +  E A  +G+    L +LV    L  F +D+G+  +   +  
Sbjct: 59  TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++A +  F      F+  ++   L    +  K+Y       +    +  +F   +   + 
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF--NIPSKDE 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L      YF   ++    ++          +   L + + ++K++Y+  +   IS    
Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293
            V       +I + EL+  Y  ++NK KY     + ++     N+   D A   LK    
Sbjct: 235 SVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALIQLKNVAN 290

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            KF+ L   +     D ++         DV     + + AK GD       + GY+I  +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + + P    +F+E ++++       +A + ++E  K        G  +  +SR     S+
Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472
            L             ++         L  VF  D        V + D   +  +I +   
Sbjct: 404 KL-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVIINDNKAILYKINKQKL 449

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                K E+  T ++++ + +K  E      ++L
Sbjct: 450 DMNSDKFEQYKTMLEQNLRNLKANELKQELVDEL 483



 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 97/262 (37%), Gaps = 19/262 (7%)

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
              ++      N+++    + KV + ++  +  +A   ++ ++        +DL      
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALIQLKNVANAKFLDLKNGKDN 302

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
            +  +    + + Y   LL +    D      +     +  Y+ V++ +  P R++  EE
Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
              +V   + + +  + +  KA   ++ +  +G +   + ++     +  +     D+E 
Sbjct: 358 AREEVLPMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKLSDKILNDSEF 415

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596
            +F  +    VF+        + I N    +++K+   K+        Q K      L  
Sbjct: 416 AYFLMN----VFNTDQNS--SYVIINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLRN 469

Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618
           +   +L   ++  LK  Y + +
Sbjct: 470 LKANELKQELVDELKKIYPIKI 491


>gi|153951630|ref|YP_001398361.1| peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152939076|gb|ABS43817.1| peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 496

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 98/514 (19%), Positives = 196/514 (38%), Gaps = 39/514 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++  +      FL WG  D  F+++ SS+V +VG +K+ FS F 
Sbjct: 1   MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             ++Q L   +Q     +  E A  +G+    L +LV    L  F +D+G+  +   +  
Sbjct: 59  TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++A +  F      F+  ++   L    +  K+Y       ++   +  +F   +   + 
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVTTDKLNQIF--NIPSKDE 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L      YF    +    ++          +   L + + ++K+NY+  +   IS    
Sbjct: 177 ELKMLASSYFMQDVLSIAKIDYD--KKNIKINEEDLKKLWNEHKENYKTKKIYEISTYFL 234

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293
            V       +I + EL+  Y  ++NK KY     + ++     N+   D A   LK    
Sbjct: 235 PVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            KF+ L   +     D ++         DV     + + AK G        + GY+I  +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGGVLRPAPYNNGYIIVKL 344

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + + P    +F+E ++++       +A + ++E  K        G  +  +SR     S+
Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKTKN-SLVNFKGDDIGFVSRDSSRESV 403

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472
            L             ++         L  VF  D        V + D   +  +I +   
Sbjct: 404 KL-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVIINDNKAILYKINQQKL 449

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                K E+  T ++++ + +K  E      ++L
Sbjct: 450 DMSSDKFEQYKTMLEQNLQNLKANELKQELVDEL 483



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 64/164 (39%), Gaps = 13/164 (7%)

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
           +  Y+ V++ +  P R++  EE   +V   + + +  + +  K    ++ +  +G +   
Sbjct: 336 NNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKTKNSLVNF--KGDDIGF 393

Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
           + ++     +  +     D+E  +F  +    VF+        + I N    +++K+   
Sbjct: 394 VSRDSSRESVKLSDKILNDSEFAYFLMN----VFNTDQNS--SYVIINDNKAILYKINQQ 447

Query: 580 KVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           K+        Q K      L  +   +L   ++  LK  Y + +
Sbjct: 448 KLDMSSDKFEQYKTMLEQNLQNLKANELKQELVDELKKIYPIKI 491


>gi|167950936|ref|ZP_02538010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 331

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 132/319 (41%), Gaps = 19/319 (5%)

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
              +  +  ++L  ++ G+ L Q   D+GL      +   I     F   D  F   ++ 
Sbjct: 1   MFDNTRMRAEVLQEMIRGSLLRQVSHDMGLRVGDQLIRSAILGIEAFQ-VDGHFDKALYE 59

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
             +  +G +E  +     + L    +       +  +   +++  R   + R   Y  L 
Sbjct: 60  RGVRLQGTSEAGFEQRVRQALLSEQLSQAVQNSVFATQREIEELIRLRNQTRDAAYFTLP 119

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
                +  +    ++  +++ +++ + APE  +I Y+L         +++  + L+  YE
Sbjct: 120 VADFLSDEEIPIDLVESYYQSHQNEFLAPEQVKIEYLLLSAEAIAPTLDVQEEALRGYYE 179

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEA------------FQSLKKGKKFIQLAE----E 302
            + E Y  PE R    ++    ++ADEA             Q ++ G+ F  LA+    +
Sbjct: 180 AHLESYGRPEQRRASHILVQVAQDADEATVAAAKEKIASLRQRVEAGEAFADLAKSESQD 239

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
            G + +   LG F K  I D +   + F+L K+G+ +  +  SFG+ +  +S IK     
Sbjct: 240 PGSAAAGGDLGFFGKG-IMDPAFESATFAL-KEGELSEAVRSSFGFHLIRLSEIKSGDVK 297

Query: 363 SFQEVKKDIANQMRITKAS 381
           SF+E ++++ +  R  +  
Sbjct: 298 SFEEARQEVESAYRKAEGR 316


>gi|86151641|ref|ZP_01069855.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841270|gb|EAQ58518.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 496

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 98/514 (19%), Positives = 196/514 (38%), Gaps = 39/514 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++  +      FL WG  D  F+++ SS+V +VG +K+ FS F 
Sbjct: 1   MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             ++Q L   +Q     +  E A  +G+    L +LV    L  F +D+G+  +   +  
Sbjct: 59  TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++A +  F      F+  ++   L    +  K+Y       +    +  +F   +   + 
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF--NIPSKDE 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L      YF   ++    ++          +   L + + ++K++Y+  +   IS    
Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293
            V       +I + EL+  Y  ++NK KY     + ++     N+   D A   LK    
Sbjct: 235 SVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            KF+ L   +     D ++         DV     + + AK GD       + GY+I  +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + + P    +F+E ++++       +A + ++E  K        G  +  +SR     S+
Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472
            L             ++         L  VF  D        V + D   +  +I +   
Sbjct: 404 KL-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVIINDNKAILYKINKQKL 449

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                K E+  T  +++ + +K  E      ++L
Sbjct: 450 DMNSDKFEQYKTMFEQNLRNLKANELKQELVDEL 483



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 98/262 (37%), Gaps = 19/262 (7%)

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
              ++      N+++    + KV + ++  +  +A   ++ ++        +DL      
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
            +  +    + + Y   LL +    D      +     +  Y+ V++ +  P R++  EE
Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
              +V   + + +  + +  KA   ++ +  +G +   + ++     +  +     D+E 
Sbjct: 358 AREEVLPMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKLSDKILNDSEF 415

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596
            +F  +    VF+        + I N    +++K+   K+        Q K  F   L  
Sbjct: 416 AYFLMN----VFNTDQNS--SYVIINDNKAILYKINKQKLDMNSDKFEQYKTMFEQNLRN 469

Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618
           +   +L   ++  LK  Y + +
Sbjct: 470 LKANELKQELVDELKKIYPIKI 491


>gi|157804205|ref|YP_001492754.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia canadensis str.
           McKiel]
 gi|157785468|gb|ABV73969.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia canadensis str.
           McKiel]
          Length = 524

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 86/481 (17%), Positives = 199/481 (41%), Gaps = 26/481 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+  RK + +++ +I   ++   F+ +G+ D L    G   V     + +  + F+ + 
Sbjct: 1   MLDNFRKTADSFIMRILFAMIAFAFIGFGIQDVLNGRRGGDVVTFSHAKNISQADFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++ G  +  E    + +D ++L  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINAISKQTGTNLTDEEIAQLNIDNRVLKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  K   F   +F +      ++E++Y+ ++ +   +   VG F         + D
Sbjct: 121 ESPVFKNKQGVFDIKIFKTYFRNSYMDEEKYLSNFKEKALKNIFVGTFAESFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ + ++ ++ P    I  P++  L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELVQIDLQNKPQDLQIPTPTDQQLKDFYQDNKTLFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287
           ++ +   K+ ++ DEL   Y +NK+++ +           ++   +++   N + A +  
Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGNQSFETVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGS 345
                G   +++AE+    + +++  S+++  E       ADSIF L++     P+  G 
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYVSYAELIEDKIIAENADSIFELSEGELSYPIEAGD 358

Query: 346 FGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
             Y+I   + +I+P     F  +K+ +         ++    +   +++      S  E 
Sbjct: 359 KSYLILVELKSIQPVKIPEFDSIKEQVNKVWIKQNIADV---NLNMIKDLAKEYNSDQEN 415

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
            +  K   I +   ++   +++ +    +    ++L  +F      +      + D  Y 
Sbjct: 416 IKELKATGIKISKKNYIRSEMENE----LTLTPEILLSIFNTKIGSNTP-VFQIGDAVYF 470

Query: 465 W 465
            
Sbjct: 471 A 471


>gi|198283164|ref|YP_002219485.1| hypothetical protein Lferr_1036 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|198247685|gb|ACH83278.1| hypothetical protein Lferr_1036 [Acidithiobacillus ferrooxidans
           ATCC 53993]
          Length = 522

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 84/519 (16%), Positives = 187/519 (36%), Gaps = 48/519 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59
           M+E  R   R+WVAK  +V++ + F++WG+S  LFS  S SS V +V  QK+  ++F   
Sbjct: 1   MMETFRNFGRSWVAKSLMVLIALSFVLWGVSGYLFSGHSTSSVVATVDGQKISDAAFQKR 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            K  L   S   G    ++ A       ++L+ L+    L      +GL+     +  +I
Sbjct: 61  MKDALARYSHIFGATTAAKMAADRSFGLEVLNGLIDNMLLGMEAGRLGLQVPDAALAKKI 120

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              P F  +   FS +++   LA  G+   ++ D   + +    +  +       S +  
Sbjct: 121 ESIPAFQ-EKGAFSKNLYQKLLAANGMTPAQFEDMLRESMRLEQLQVVPQVIATASKVEA 179

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
            +   +  E R V  + + +    A A P+   +  ++  + D +R P   ++ Y++   
Sbjct: 180 TRIWAWSQEYRDVSTVDIRDSDFAAAARPTATQVADYYHAHMDQFRLPAQVQVQYVVLGP 239

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK---- 295
            +   K                    SP + T    V  N    +     ++  K     
Sbjct: 240 KDFVAKSGAP----------TSPAVSSPPVATPHPAVAVNSSAENAFQAQVENFKDRLFS 289

Query: 296 ----FIQLAEEQGKSLSD---------ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
                  +A+  G ++ +         ++ G FS     D++ + ++ +    G  +  +
Sbjct: 290 SPDGLNAVAKAYGLTVQESGVLTAGQVLTKGPFSDAKALDLAFSKAVLA----GKNSTAL 345

Query: 343 HGSFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
             + G ++  H+ +  P        V   I  ++   KA +  ++  + L          
Sbjct: 346 TLANGDLLAVHLLHYTPGSVQPLSAVAGAITAKLSTEKAEQLAQKKAQALL--------- 396

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEV-AAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
              +R+ K +++      +     +   +  A+   + +L   F    P+    ++ +  
Sbjct: 397 -TAARQAKDMNMLTDHGAYPLHAYRDVTIRNALGLDKAVLEAAFTAPAPVGGVPSMDMVK 455

Query: 461 --GSYMWVQIKESIPARDRKLE-EVLTDVKKDWKTVKTA 496
               Y    +          +  +V   ++   +  +  
Sbjct: 456 TSSGYQIFAVTRVTAPAAAAINPKVTAQIRASLEEQRGR 494



 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 84/258 (32%), Gaps = 20/258 (7%)

Query: 380 ASEKVKEDYKRLEEFL-ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
           A    +   +  ++ L +    ++ +++   +       V  +G    G+ +   P+ + 
Sbjct: 272 AENAFQAQVENFKDRLFSSPDGLNAVAKAYGL------TVQESGVLTAGQVLTKGPFSDA 325

Query: 439 -LLFRVFGKDDPLSKDHT-VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
             L   F K     K+ T + L +G  + V +    P   + L  V   +     T K  
Sbjct: 326 KALDLAFSKAVLAGKNSTALTLANGDLLAVHLLHYTPGSVQPLSAVAGAITAKLSTEKAE 385

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS-- 554
           +    KA  L+    +  K+   +  +    L     +   +          +   F+  
Sbjct: 386 QLAQKKAQALLTAARQA-KDMNMLTDHGAYPLHAYRDVTIRNALG--LDKAVLEAAFTAP 442

Query: 555 GPVEMVKCFP-IENGLSYVVFKVTNSKVGPVQE-----KDKFISYLTQMMNKDLLDSVIA 608
            PV  V     ++    Y +F VT                +  + L +   + L  + + 
Sbjct: 443 APVGGVPSMDMVKTSSGYQIFAVTRVTAPAAAAINPKVTAQIRASLEEQRGRLLSTAYLK 502

Query: 609 YLKSQYSVTVHDNLIQRY 626
            L+    V +++  + + 
Sbjct: 503 DLREHARVKINNAQLAQI 520


>gi|148926659|ref|ZP_01810340.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845178|gb|EDK22273.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 496

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 97/514 (18%), Positives = 195/514 (37%), Gaps = 39/514 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++  +      FL WG  D  F+++ SS+V +VG +K+ FS F 
Sbjct: 1   MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             ++Q L   +Q     +  E A  +G+    L +LV    L  F +D+G+  +   +  
Sbjct: 59  TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++A +  F      F+  ++   L    +  K+Y            +  +F   +   + 
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEAITDKLNQIF--NIPSKDE 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L      YF   ++    ++          +   L + + ++K++Y+  +   IS    
Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293
            V       +I + EL+  Y  ++NK KY     + ++     N+   D A   LK    
Sbjct: 235 PVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            KF+ L   +     D ++         DV     + S AK GD       + GY+I  +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLSKAKNGDVLRPAPYNNGYIIVKL 344

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + + P    +F+E ++++       +  + ++E  K        G  +  +SR     S+
Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQTRKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472
            +             ++         L  VF  D        V + D   +  +I +   
Sbjct: 404 KV-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVVINDNKAILYKINKQKL 449

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                K E+  T ++++ + +K  E      ++L
Sbjct: 450 DMNSDKFEQYKTMLEQNLQNLKANELKQELVDEL 483



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 98/262 (37%), Gaps = 19/262 (7%)

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
              ++      N+++    + KV + ++  +  +A   ++ ++        +DL      
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
            +  +    + + Y   LL +    D      +     +  Y+ V++ +  P R++  EE
Sbjct: 303 FQKDQNISESDVYYPIDLLSKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
              +V   + + +T + +  KA   ++ +  +G +   + ++     +  +     D+E 
Sbjct: 358 AREEVLPMYLSEQTRKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEF 415

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596
            +F  +    VF+        + + N    +++K+   K+        Q K      L  
Sbjct: 416 AYFLMN----VFNTDQNS--SYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQN 469

Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618
           +   +L   ++  LK  Y + +
Sbjct: 470 LKANELKQELVDELKKIYPIKI 491


>gi|205355536|ref|ZP_03222307.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346770|gb|EDZ33402.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 496

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 96/514 (18%), Positives = 196/514 (38%), Gaps = 39/514 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++  +      FL WG  D  F+++ SS+V +VG +K+ FS F 
Sbjct: 1   MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             ++Q L   +Q     +  E A  +G+    L +LV    L  F +D+G+  +   +  
Sbjct: 59  TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++A +  F      F+  ++   L    +  K+Y       +    +  +F   +   + 
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF--NIPSKDE 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L      YF   ++    ++          +   L + + ++K++Y+  +   IS    
Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293
            V       +I + EL+  Y  ++NK KY     + ++     N+   D A   LK    
Sbjct: 235 PVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            KF+ L   +     D ++         DV     + + AK GD       + GY+I  +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + + P    +F+E ++++       +  + ++E  K        G  +  +SR     S+
Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQTRKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472
            +             ++         L  VF  D        V + D   +  +I +   
Sbjct: 404 KV-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVVINDNKAILYKINKQKL 449

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                K E+  T ++++ + +K  E      ++L
Sbjct: 450 DMNSDKFEQYKTMLEQNLQNLKANELKQELVDEL 483



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 98/262 (37%), Gaps = 19/262 (7%)

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
              ++      N+++    + KV + ++  +  +A   ++ ++        +DL      
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
            +  +    + + Y   LL +    D      +     +  Y+ V++ +  P R++  EE
Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
              +V   + + +T + +  KA   ++ +  +G +   + ++     +  +     D+E 
Sbjct: 358 AREEVLPMYLSEQTRKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEF 415

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596
            +F  +    VF+        + + N    +++K+   K+        Q K      L  
Sbjct: 416 AYFLMN----VFNTDQNS--SYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQN 469

Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618
           +   +L   ++  LK  Y + +
Sbjct: 470 LKANELKQELVDELKKIYPIKI 491


>gi|255021292|ref|ZP_05293340.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969155|gb|EET26669.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus
           ATCC 51756]
          Length = 516

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 147/415 (35%), Gaps = 24/415 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59
           ML+  RK S++W AKI L V+ + F++WG+S  LFS  SG   V  V   K+  + F   
Sbjct: 1   MLDAFRKLSQSWAAKIVLAVIALSFVLWGVSGYLFSNDSGEQVVAKVDGDKISAAIFQQR 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
                   +Q  G    ++ A+       +L+ L+    L      +GL+     +  +I
Sbjct: 61  LHDAREHYAQVFGPEAAAQMAKDPSFAPDVLNGLIDNLLLAHEARKLGLQVPDSALAQKI 120

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
                F  K  KFS   +   L   G+   ++       +    +  +       S    
Sbjct: 121 EGISAFADK-GKFSRAKYQEVLRANGLTPVKFEAMLRDSMLLEQLQAVPQILAVASRKDA 179

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           + A  +  E R    + +  R     A P++A +  ++++++ +Y  P    + Y+ F  
Sbjct: 180 ESAWSWSQEYRDARVVQIPVRSFLKAATPTDAEVQSYYQQHQSDYALPAQVEVQYVTFGP 239

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKKFIQ 298
            +   +   S     A          SPE+    Q+  F ++  +D              
Sbjct: 240 KDF-DQSHGSGTAATASASSPAPSQGSPELAFESQIENFKDKLFSDS--------GSLAG 290

Query: 299 LAEEQGKSLSDI---------SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           +A+  G  + D          S G F+     D++ + ++ +                  
Sbjct: 291 VAKAYGLKIEDSGTLTAGKTPSSGVFADPKALDLAFSKAVLAGKNSSALRLPNGDLLAVH 350

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
           + H     P  +   Q V+ +IA  +   KA    K   + L +         ++
Sbjct: 351 LLH---YTPPRSQDLQAVRSEIAATLAERKARRLAKARAQELLDAAEKSRDPKDL 402



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 82/251 (32%), Gaps = 17/251 (6%)

Query: 383 KVKEDYKRLEEFL-ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
             +   +  ++ L +   S+  +++   +   D   +        G              
Sbjct: 269 AFESQIENFKDKLFSDSGSLAGVAKAYGLKIEDSGTLTAGKTPSSGVFADPKALDLAFSK 328

Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
            V            + LP+G  + V +    P R + L+ V +++       K      +
Sbjct: 329 AVLA----GKNSSALRLPNGDLLAVHLLHYTPPRSQDLQAVRSEIAATLAERKARRLAKA 384

Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
           +A +L+    K  ++ +D+  +        + + R            ++ +F  P    +
Sbjct: 385 RAQELLDAAEKS-RDPKDLDPDGSYPEKRYSDLARHSAAG--LDPSLMNAIFLAPAPEGQ 441

Query: 562 CFP----IENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
             P    +E  + Y ++ VT   +            +    L +   + L    +  L+ 
Sbjct: 442 GAPSFGMVEQKVGYALYAVTRVILPNQALLNPSVTQEIQRSLEEQRARLLTTGYLQALRH 501

Query: 613 QYSVTVHDNLI 623
           +  + +H++++
Sbjct: 502 KAHIRIHEDVL 512


>gi|315926808|gb|EFV06182.1| Putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 496

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 96/514 (18%), Positives = 196/514 (38%), Gaps = 39/514 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++  +      FL WG  D  F+++ SS+V +VG +K+ FS F 
Sbjct: 1   MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             ++Q L   +Q     +  E A  +G+    L +LV    L  F +D+G+  +   +  
Sbjct: 59  TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++A +  F      F+  ++   L    +  K+Y       +    +  +F   +   + 
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVIADKLNQIF--NIPSKDE 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L      YF   ++    ++          +   L + + ++K++Y+  +   IS    
Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293
            V       +I + EL+  Y  ++NK KY     + ++     N+   D A   LK    
Sbjct: 235 PVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            KF+ L   +     D ++         DV     + + AK GD       + GY+I  +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + + P    +F+E ++++       +  + ++E  K        G  +  +SR     S+
Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQTRKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472
            +             ++         L  VF  D        V + D   +  +I +   
Sbjct: 404 KV-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVVINDNKAILYKINKQKL 449

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                K E+  T ++++ + +K  E      ++L
Sbjct: 450 DMNSDKFEQYKTMLEQNLQNLKANELKQELVDEL 483



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 98/262 (37%), Gaps = 19/262 (7%)

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
              ++      N+++    + KV + ++  +  +A   ++ ++        +DL      
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
            +  +    + + Y   LL +    D      +     +  Y+ V++ +  P R++  EE
Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
              +V   + + +T + +  KA   ++ +  +G +   + ++     +  +     D+E 
Sbjct: 358 AREEVLPMYLSEQTRKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEF 415

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596
            +F  +    VF+        + + N    +++K+   K+        Q K      L  
Sbjct: 416 AYFLMN----VFNTDQNS--SYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQN 469

Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618
           +   +L   ++  LK  Y + +
Sbjct: 470 LKANELKQELVDELKKIYPIKI 491


>gi|307610560|emb|CBX00148.1| hypothetical protein LPW_18931 [Legionella pneumophila 130b]
          Length = 316

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 130/317 (41%), Gaps = 19/317 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ + +  +  VA + ++++ + F ++G+     S   S   V V  + +   +F  ++
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +       Q +  +     A    L  ++L+ +++     Q     G E    +    I 
Sbjct: 61  R--RTRAQQDLPQMTA---ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F  +D  FS   +   L+      + +     + +        F+G     +  + 
Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQKEVRQGMLLNQQRFAFMGTSFALSDEIK 174

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  R Y + R  DY+ + +      A  S   +  ++ ++   +   E   + Y+L  +H
Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLSMH 234

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288
           + + +I+IS DE+++ YE+NK  Y +P    V  ++F              +++ADE + 
Sbjct: 235 DIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYS 294

Query: 289 SLKKG-KKFIQLAEEQG 304
            LKK  ++F +    + 
Sbjct: 295 DLKKHPEQFDKYVASKS 311


>gi|23010100|ref|ZP_00050908.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 287

 Score =  229 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 122/249 (48%), Gaps = 5/249 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
           ML+ IR AS+ W+ K+ L V+F  FLI G++    +  F    SSTV +VG+  +     
Sbjct: 1   MLQSIRNASQHWLGKVVLTVIF-TFLIAGVAIFGVEEFFRGGSSSTVATVGKTPISAEEV 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ +L     ++   +  ++ARS+GL++++L  L++ A LDQ   D+GL      V 
Sbjct: 60  RTAYQNQLQRYQAQLKRTLTPDQARSLGLERQVLSQLITEAALDQKTTDLGLAVSDAAVL 119

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I   P F   +  F   +F   L R G+NE  ++     +++R  +    V  +    
Sbjct: 120 RAIQDEPSFKNANGTFDRVLFYQTLQRAGLNEAMFVREQRSVIARLQLADAIVAELPVPQ 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            + +   R+  E RS   + L       I DPS   L+ +++  K ++RAPEY+R+  ++
Sbjct: 180 AIREAVHRYSTERRSAAVLTLAPSAAGEIPDPSEEELSAYYDNNKASFRAPEYRRLKLLV 239

Query: 237 FDVHEKEKK 245
            D  + +  
Sbjct: 240 LDPRDSKPS 248


>gi|283956103|ref|ZP_06373590.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase D
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792423|gb|EFC31205.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase D
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 496

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 96/513 (18%), Positives = 196/513 (38%), Gaps = 39/513 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++  +      FL WG  D  F+++ SS+V +VG +K+ FS F 
Sbjct: 1   MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             ++Q L   +Q     +  E A  +G+    L +LV    L  F +D+G+  +   +  
Sbjct: 59  TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++A +  F      F+  ++   L    +  K+Y       +    +  +F   +   + 
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF--NIPSKDE 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L      YF   ++    ++          +   L + + ++K++Y+  +   IS    
Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293
            V       +I + EL+  Y  ++NK KY     + ++     N+   D A   LK    
Sbjct: 235 PVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            KF+ L   +     D ++         DV     + + AK GD       + GY+I  +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + + P    +F+E ++++       +A + ++E  K        G  +  +SR     S+
Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472
            L             ++         L  VF  D        V + D   +  +I +   
Sbjct: 404 KL-----------SDKILNDSEFAYFLMNVFNAD---QNSSYVIINDNKAILYKINKQKL 449

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
                K ++  T ++++ + +K  E      ++
Sbjct: 450 DMNSDKFKQYKTMLEQNLQNLKANELKQELVDE 482


>gi|86149807|ref|ZP_01068036.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88596914|ref|ZP_01100150.1| putative peptidyl-prolyl cis-trans isomerase D homolog
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562333|ref|YP_002344112.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85839625|gb|EAQ56885.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88190603|gb|EAQ94576.1| putative peptidyl-prolyl cis-trans isomerase D homolog
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360039|emb|CAL34831.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284925950|gb|ADC28302.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315929133|gb|EFV08360.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 496

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 97/514 (18%), Positives = 198/514 (38%), Gaps = 39/514 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++  +      FL WG  D  F+++ SS+V +VG +K+ FS F 
Sbjct: 1   MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             ++Q L   +Q     +  E A  +G+    L +LV    L  F +D+G+  +  ++  
Sbjct: 59  TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENQILQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++A +  F      F+  ++   L    +  K+Y       +    +  +F   +   + 
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEVITDKLNQIF--NIPSKDE 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L      YF   ++    ++          +   L + + ++K++Y+  +   IS    
Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293
            V       +I + EL+  Y  ++NK KY     + ++     N+   D A   LK    
Sbjct: 235 PVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            KF+ L   +     D ++         DV     + + AK GD       + GY+I  +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + + P    +F+E ++++       +A + ++E  K        G  +  +SR     S+
Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472
            +             ++         L  VF  D        V + D   +  +I +   
Sbjct: 404 KV-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVVINDNKAILYKINKQKL 449

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                K E+  T ++++ + +K  E      ++L
Sbjct: 450 DMNSDKFEQYKTMLEQNLQNLKANELKQELVDEL 483



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 97/262 (37%), Gaps = 19/262 (7%)

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
              ++      N+++    + KV + ++  +  +A   ++ ++        +DL      
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
            +  +    + + Y   LL +    D      +     +  Y+ V++ +  P R++  EE
Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
              +V   + + +  + +  KA   ++ +  +G +   + ++     +  +     D+E 
Sbjct: 358 AREEVLPMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEF 415

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596
            +F  +    VF+        + + N    +++K+   K+        Q K      L  
Sbjct: 416 AYFLMN----VFNTDQNS--SYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQN 469

Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618
           +   +L   ++  LK  Y + +
Sbjct: 470 LKANELKQELVDELKKIYPIKI 491


>gi|283953940|ref|ZP_06371469.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794545|gb|EFC33285.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 496

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 98/514 (19%), Positives = 198/514 (38%), Gaps = 39/514 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++  +      FL WG  D  F+++ SS+V +VG +K+ FS F 
Sbjct: 1   MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKISFSEFD 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             ++Q L   +Q     +  E A  +G++   L +LV    L  F +D+G++A+   +  
Sbjct: 59  TRYRQILSYYNQISNGALTPENAEQLGIENIALSSLVEDKLLLNFAKDLGVDANENEILQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++A +  F      F+  ++   L    +  K+Y       +    +  +F   +   + 
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNVNNLTPKDYETQLANEVIVGKLDHIF--NIPNKDE 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L      YF   ++    ++          +   L + + ++K++Y+  +   IS    
Sbjct: 177 ELKMLASSYFMRDALSIAKIDYD--KKNIKINEEDLKKLWSEHKEDYKTKKMYEISTYFL 234

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293
                    +I + EL+  Y  ++NK KY     + ++     N+   D A   LK    
Sbjct: 235 P----SSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKSVAN 290

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            KF+ L   +     D ++         DV     + + AK GD    +  + GY+I  +
Sbjct: 291 AKFLDLKNGKDSFQKDHNISE------SDVYYPIDLLNKAKNGDVLRPVLYNNGYIIVKL 344

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + + P    +F+E + ++       +A + ++E  K        G S+  +SR     + 
Sbjct: 345 NKVDPIRNKTFEEARDEVLPIYLSEQARKNLEEKAKN-SLANFKGDSIGFVSRDSSRENA 403

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472
            +              +         L  VF  D        V + D   +  +I +   
Sbjct: 404 KV-----------SDNMLNDSEFSYFLMNVFNTD---QNSSYVIINDSKAILYKINKQKL 449

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                K E+  T +K++ + +K  E      ++L
Sbjct: 450 DMNSDKFEQYKTMLKQNLQNLKVNELKQELVDEL 483



 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 101/262 (38%), Gaps = 19/262 (7%)

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
              ++      N+++    + KV + ++  +  +A   ++ ++        +DL     +
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKSVANAKFLDLKNGKDS 302

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
            +       + + Y   LL +    D          L +  Y+ V++ +  P R++  EE
Sbjct: 303 FQKDHNISESDVYYPIDLLNKAKNGDVLRP-----VLYNNGYIIVKLNKVDPIRNKTFEE 357

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
              +V   + + +  + +  KA   +  +  +   F     +   + ++ N +N     +
Sbjct: 358 ARDEVLPIYLSEQARKNLEEKAKNSLANFKGDSIGFVSRDSSRENAKVSDNMLN-----D 412

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-DKFISYLTQMMN- 599
             F Y  ++ VF+        + I N    +++K+   K+    +K +++ + L Q +  
Sbjct: 413 SEFSYFLMN-VFNTDQNS--SYVIINDSKAILYKINKQKLDMNSDKFEQYKTMLKQNLQN 469

Query: 600 ---KDLLDSVIAYLKSQYSVTV 618
               +L   ++  LK  Y + +
Sbjct: 470 LKVNELKQELVDELKKIYPIKI 491


>gi|91204986|ref|YP_537341.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii
           RML369-C]
 gi|91068530|gb|ABE04252.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii
           RML369-C]
          Length = 519

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 91/482 (18%), Positives = 195/482 (40%), Gaps = 30/482 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IRK + +++ ++   ++   F+ +G+ D L    G   V     + +    F+ + 
Sbjct: 1   MLNNIRKTADSFIMRVLFAMIVFAFVGFGIKDVLHGRGGGDIVTFSHAKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS+++G  +  E    + +D +IL  LV    LD  +     +     V   + 
Sbjct: 61  SLEINAISKQVGVSLTEEEIAQLNIDNRILKRLVFENILDYLVSYYDFDISDDTVKNLVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F      F   +F +       +E++Y+ ++ +   +    G F+        + D
Sbjct: 121 ESPVFKNDQGIFDIKLFKTYFRNSYTDEEKYLVNFKEKALKNIFAGTFLDSFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ + +N ++ P    I  PS+  L  +++  K ++  PE +  SYI  
Sbjct: 181 NIVNYMAEKREVELVQMNLQNKPKDLQIPVPSDQELKDFYQNNKSSFEIPEKRSFSYIKV 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287
                +KKI+++ +EL   Y +NKE++             E    +++   N + A    
Sbjct: 241 TTENLQKKIQVTKEELLEFYNENKEEFGEQSFEDVQKQLREQVESQKIDILNMELAKNLE 300

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344
             +  G   +++AE+    +++I+  S++ + I D      ADSIF L++     P+   
Sbjct: 301 DDVAAGSSLVEIAEKYELPINNINNISYA-DLIEDKIIAENADSIFELSEGELSYPIEAE 359

Query: 345 SFGY-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
              Y V+  + +I P+    F  +K+ I +       ++   +  K L +        D 
Sbjct: 360 DKSYLVLVELKSINPAKIPEFDSIKEQINSTWIKQYLADLNIKIMKDLAKE-------DN 412

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
               +K  +  +    +   +++  ++       ++L  +F      +      + D  Y
Sbjct: 413 FDTEDKTSNAKIRNKTYIRSEMENDQMLT----PEILLSIFNTQIGANTP-VFQVGDDLY 467

Query: 464 MW 465
             
Sbjct: 468 FA 469


>gi|57236997|ref|YP_178798.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
           jejuni RM1221]
 gi|57165801|gb|AAW34580.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
           jejuni RM1221]
 gi|315058157|gb|ADT72486.1| Peptidyl-prolyl cis-trans isomerase ppiD [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 496

 Score =  227 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 97/514 (18%), Positives = 196/514 (38%), Gaps = 39/514 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++  +      FL WG  D  F+++ SS+V +VG +K+ FS F 
Sbjct: 1   MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             ++Q L   +Q     +  E A  +G+    L +LV    L  F +D+G+  +   +  
Sbjct: 59  TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++A +  F      F+  ++   L    +  K+Y       +    +  +F   +   + 
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEVITDKLNQIF--NIPSKDE 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L      YF   ++    ++          +   L + + ++K++Y+  +   IS    
Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293
            V       +I + EL+  Y  ++NK KY     + ++     N+   D A   LK    
Sbjct: 235 PVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            KF+ L   +     D ++         DV     + S AK GD       + GY+I  +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLSKAKNGDVLRPAPYNNGYIIVKL 344

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + + P    +F+E ++++       +  + ++E  K        G  +  +SR     S+
Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQTRKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472
            +             ++         L  VF  D        V + D   +  +I +   
Sbjct: 404 KV-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVVINDNKAILYKINKQKL 449

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                K E+  T ++++ + +K  E      ++L
Sbjct: 450 DMNSDKFEQYKTMLEQNLQNLKANELKQELVDEL 483



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 98/262 (37%), Gaps = 19/262 (7%)

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
              ++      N+++    + KV + ++  +  +A   ++ ++        +DL      
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
            +  +    + + Y   LL +    D      +     +  Y+ V++ +  P R++  EE
Sbjct: 303 FQKDQNISESDVYYPIDLLSKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
              +V   + + +T + +  KA   ++ +  +G +   + ++     +  +     D+E 
Sbjct: 358 AREEVLPMYLSEQTRKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEF 415

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596
            +F  +    VF+        + + N    +++K+   K+        Q K      L  
Sbjct: 416 AYFLMN----VFNTDQNS--SYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQN 469

Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618
           +   +L   ++  LK  Y + +
Sbjct: 470 LKANELKQELVDELKKIYPIKI 491


>gi|108758423|ref|YP_630863.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622]
 gi|108462303|gb|ABF87488.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622]
          Length = 524

 Score =  227 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 91/532 (17%), Positives = 194/532 (36%), Gaps = 66/532 (12%)

Query: 10  RTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSST----VVSVGRQKVPFSSFINSWKQEL 64
           R   + +F++ + V F + +G   + F  +G +T    V SV  +++P   F  +W Q++
Sbjct: 10  RKVASLLFIIGIAVVFTLQFGPGSSGFGATGGATAPGSVASVNGKEIPLRDFAAAWAQQM 69

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             +  + G  V    AR  G+  ++LD LV+   L Q  E  G+ A    +   I ++  
Sbjct: 70  SFLRSQ-GSPVPESLARQFGMHNQVLDRLVNTELLAQAAERHGIAASDDELRKLIHQNTD 128

Query: 125 FHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
           F  KD +F  + +   L      + +++     + L+   ++ +  G    S+  +    
Sbjct: 129 FQ-KDGQFDFERYQQVLRDFYRKSPQDFEAELRRQLAAQKMMDVVRGNAVVSDDEVRARF 187

Query: 184 RFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
                   V +              P+ A L +W + +                      
Sbjct: 188 EKEGNQAKVVFARFLPAMYADKVPSPTAAQLAEWKKAH---------------------- 225

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADEAFQSL 290
                    +++  +E N+  Y  PE     Q++                ++A    + +
Sbjct: 226 -------EKDIKEYFEANRFVYQQPERIRARQVLVKLPPEATADQKKAALEKAQALRKEI 278

Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           + GK F Q+A +  +          LG   +    + +LAD+ F+L K+G+ T  +   F
Sbjct: 279 EGGKDFAQVARDSSEDPGSKARGGDLGWVERGSW-EPALADAAFAL-KQGEVTQPVETKF 336

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQM-RITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           G  +  V   + +     ++V+ +IA  + +  +A ++ + + ++       G  +  + 
Sbjct: 337 GVHLVKVDEKQAAQDKKLEDVQDEIATTLYKQDRAKQQARAEAEKALASAKAGQDLKTLF 396

Query: 406 RREKIVSIDL--------PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
             EK     L          V+      +G+ V  +    +L+   F    P   D    
Sbjct: 397 PPEKEQPALLRFETETRPEAVETDSFTAEGEAVPHLGPAPELVKAAFAVSAPQPLDSVFP 456

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
           L +G ++  Q+ E         ++   +++   +  K  E   S    L  +
Sbjct: 457 LGEG-FVVAQVVERQKPDAEGFDKRKEELRAQARQAKQIELTESFLKALREQ 507



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 85/273 (31%), Gaps = 29/273 (10%)

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
                 +   E  + L + +  G    +++R               G   +G    A+  
Sbjct: 259 ATADQKKAALEKAQALRKEIEGGKDFAQVARDSSEDPGSKARGGDLGWVERGSWEPALAD 318

Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW-KTVK 494
               L +        +K             V++ E   A+D+KLE+V  ++     K  +
Sbjct: 319 AAFALKQGEVTQPVETKF--------GVHLVKVDEKQAAQDKKLEDVQDEIATTLYKQDR 370

Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDI-------------GKNLGASLLTTNQINRMDNEN 541
             ++  ++A +  L  +K G++ + +                     + T+         
Sbjct: 371 AKQQARAEAEK-ALASAKAGQDLKTLFPPEKEQPALLRFETETRPEAVETDSFTAEGEAV 429

Query: 542 KFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFISYLT 595
              G   + +   F+             G  +VV +V   +    +     K++  +   
Sbjct: 430 PHLGPAPELVKAAFAVSAPQPLDSVFPLGEGFVVAQVVERQKPDAEGFDKRKEELRAQAR 489

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
           Q    +L +S +  L+ Q SV  +   I   + 
Sbjct: 490 QAKQIELTESFLKALREQGSVVTNTAAIDSVVG 522


>gi|315124196|ref|YP_004066200.1| hypothetical protein ICDCCJ07001_630 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315017918|gb|ADT66011.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 454

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 182/479 (37%), Gaps = 38/479 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++  +      FL WG  D  F+++ SS+V +VG +K+ FS F 
Sbjct: 1   MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             ++Q L   +Q     +  E A  +G+    L +LV    L  F +D+G+  +   +  
Sbjct: 59  TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++A +  F      F+  ++   L    +  K+Y       +    +  +F   +   + 
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF--NIPSKDE 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L      YF   ++    ++          +   L + + ++K++Y+  +   IS    
Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293
            V       +I + EL+  Y  ++NK KY     + ++     N+   D A   LK    
Sbjct: 235 SVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            KF+ L   +     D ++         DV     + + AK GD       + GY+I  +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           + + P    +F+E ++++       +A + ++E  K        G  +  +SR     S+
Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
            L             ++         L  VF  D        V + D   +  +I +  
Sbjct: 404 KL-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVIINDNKAILYKINKQK 448



 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 56/147 (38%), Gaps = 6/147 (4%)

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
              ++      N+++    + KV + ++  +  +A   ++ ++        +DL      
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
            +  +    + + Y   LL +    D      +     +  Y+ V++ +  P R++  EE
Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVL 508
              +V   + + +  + +  KA   ++
Sbjct: 358 AREEVLPMYLSEQARKNLEEKAKNSLV 384


>gi|157827683|ref|YP_001496747.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii OSU
           85-389]
 gi|157802987|gb|ABV79710.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii OSU
           85-389]
          Length = 519

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 91/482 (18%), Positives = 195/482 (40%), Gaps = 30/482 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IRK + +++ ++   ++   F+ +G+ D L    G   V     + +    F+ + 
Sbjct: 1   MLNNIRKTADSFIMRVLFAMIVFAFVGFGIKDVLHGRGGGDIVTFSHAKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS+++G  +  E    + +D +IL  LV    LD  +     +     V   + 
Sbjct: 61  SLEINAISKQVGVSLTEEEIAQLNIDNRILKRLVFENILDYLVSYYDFDISDDTVKNLVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F      F   +F +       +E++Y+ ++ +   +    G F+        + D
Sbjct: 121 ESPVFKNDQGIFDIKLFKTYFRNSYTDEEKYLVNFKEKALKNIFAGTFLDSFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ + +N ++ P    I  PS+  L  +++  K ++  PE +  SYI  
Sbjct: 181 NIVNYMAEKREVELVQMNLQNKPKDLQIPVPSDQELKDFYQNNKSSFEIPEKRSFSYIKV 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287
                +KKI+++ +EL   Y +NKE++             E    +++   N + A    
Sbjct: 241 TTENLQKKIQVTKEELLEFYNENKEEFGEQSFEDVQKQLREQVESQKIDILNMELAKNLE 300

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344
             +  G   +++AE+    +++I+  S++ + I D      ADSIF L++     P+   
Sbjct: 301 DDVAAGSSLVEIAEKYELPINNINNISYA-DLIEDKIIAENADSIFELSEGELSYPIEAE 359

Query: 345 SFGY-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
              Y V+  + +I P+    F  +K+ I +       ++   +  K L +        D 
Sbjct: 360 DKSYLVLVELKSINPAKIPEFDIIKEQINSTWIKQYLADLNIKIMKDLAKE-------DN 412

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
               +K  +  +    +   +++  ++       ++L  +F      +      + D  Y
Sbjct: 413 FDTEDKTSNAKIRNKTYIRSEMENDQMLT----PEILLSIFNTQIGANTP-VFQVGDDLY 467

Query: 464 MW 465
             
Sbjct: 468 FA 469


>gi|118581468|ref|YP_902718.1| hypothetical protein Ppro_3065 [Pelobacter propionicus DSM 2379]
 gi|118504178|gb|ABL00661.1| conserved hypothetical protein [Pelobacter propionicus DSM 2379]
          Length = 527

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 106/528 (20%), Positives = 199/528 (37%), Gaps = 38/528 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSF 56
           ML++IR+  ++ + K+  VV+ + F+          +  S S  +    V R K+    F
Sbjct: 1   MLDLIRQKKQSIIIKVVFVVIVLSFIGTMFLVWGKGSDGSGSSMAYAAKVNRHKISLEEF 60

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            N++++   +  Q  G  +  E  +++GL K  L++L+  A + +  + +G+ A    V 
Sbjct: 61  QNAYQRMRNIYQQIYGQSLTPEIEKTLGLKKAALNSLIDTALILKEAKKMGITASKDEVS 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
           G IA  P+F  KD  FS D++   L    I  KE+ +   + L         +  +  S+
Sbjct: 121 GAIAAMPMFQ-KDGVFSFDLYQQLLKSNRITAKEFEEAQQRELILKKTRQAIINKVAVSD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
                  R   +   ++Y+      V     P+ A L ++ +K +D +R  E   ISY+L
Sbjct: 180 QEALDLFRKENDRIELEYLSYGPADVMGEIRPTEAELKEFLQKNQDRFRTAEKAEISYVL 239

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPN-----QK 281
            D   +  +  ++ DE+Q  Y+KN +++             E    E L         + 
Sbjct: 240 IDPASQAARQSLTEDEIQTFYQKNIDRWQGKDGILPLADVRERVRAEALKQKAARQAFEL 299

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISL---GSFSKEYIPDVSLADSIFSLAKKGDF 338
            AD  F+++K G     +A +         L    +       + +L    F L K+G+ 
Sbjct: 300 AADTLFKNIKSG-DLNLIAAKLNLKPQQTPLFSADASPPALAGETALIRKAFEL-KQGEL 357

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
              +    G  I  V    PS      E+K  +    +  KA +  +   ++    LA  
Sbjct: 358 GGPVETGRGIYIVKVRQRIPSQVRPLNEIKAQVEQSFKAAKAVDLARGKAEQAARQLAAK 417

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
             +                    G   KG +V +I     L+   F              
Sbjct: 418 KPLSS------------QSTSSFGFSAKG-DVPSIGNAPDLMEAAFRLTSASPAATAPFK 464

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
               +  +++K    A   + +   T +K+    VK  E +++   QL
Sbjct: 465 VGDRWYAIRLKSRSEAPRAEFDRTKTAIKQGMLPVKQQEALTTWVKQL 512



 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 3/123 (2%)

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
              L +V   V+ +    K A +    A   + +  K G +   I   L      T   +
Sbjct: 273 ILPLADVRERVRAEALKQKAARQAFELAADTLFKNIKSG-DLNLIAAKLNLKPQQTPLFS 331

Query: 536 RMDNENKFFGYDG-ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
              +     G    I + F      +   P+E G    + KV       V+  ++  + +
Sbjct: 332 ADASPPALAGETALIRKAFELKQGELGG-PVETGRGIYIVKVRQRIPSQVRPLNEIKAQV 390

Query: 595 TQM 597
            Q 
Sbjct: 391 EQS 393


>gi|239948494|ref|ZP_04700247.1| peptidyl-prolyl cis-trans isomerase [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922770|gb|EER22794.1| peptidyl-prolyl cis-trans isomerase [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 524

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 86/482 (17%), Positives = 202/482 (41%), Gaps = 28/482 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++   ++   F+ +G+ D L        +     + +    F+ + 
Sbjct: 1   MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIITFSHVKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F   +F +      ++E++Y+ ++ +   +   VG F+        + D
Sbjct: 121 ESPVFKNEQGVFDIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I ++ ++ P    I  P++  L  +++  K ++  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTDQQLKDFYQDNKTSFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287
           ++ +   K+ ++ DEL   Y +NK+++ +           ++   +++   N + A +  
Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGNQSFESVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG- 344
                G   +++AE+    + +++  S+++  E       ADSIF L++ G+ +  I   
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYVSYAELIEDKIIAENADSIFELSE-GELSYPIETE 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
              Y+I   + +I+P+    F  +K+ +         ++    + K +++      S  E
Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQVNKVWIKQNIADV---NLKIIKDLAKEYNSEQE 414

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
             +  K   I +   ++   +++      +    ++L  +F      +      + D  Y
Sbjct: 415 NIKELKANGIKISKKNYIRSEME----NDLTLAPEILLSIFNTKIGSNTP-VFQVGDEVY 469

Query: 464 MW 465
             
Sbjct: 470 FA 471


>gi|157826283|ref|YP_001494003.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia akari str.
           Hartford]
 gi|157800241|gb|ABV75495.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia akari str.
           Hartford]
          Length = 524

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/481 (18%), Positives = 197/481 (40%), Gaps = 26/481 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++   ++   F+ +G+ D L        V     + +    F+ + 
Sbjct: 1   MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
              +  IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLAINAISKQTGTSLTDEEIAQLNIDNQILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F    F +      I+E++Y+ ++ +   +  +VG F+      N + D
Sbjct: 121 ESPVFQNEQGAFDIKNFKAYFRNSYIDEEKYLLNFKEKALKNILVGSFIESFYVPNAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I ++ ++ P    I  P++  L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTDQQLKVFYQDNKTAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287
           ++ +   K+ ++ DEL   Y +NK+++             ++   +++   N + A +  
Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGDQSFELVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGS 345
                G   +++AE+    + +++  S+++  E       ADSIF L++     P+    
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADSIFELSEGELSYPIEAED 358

Query: 346 FGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
             Y+I   + +I+P+    F  +K+ +         ++    + K +++      S  E 
Sbjct: 359 KSYLILVELKSIQPTKIPEFDTIKEQVNKVWIKQNIADV---NLKIIKDLAKEYNSDQEN 415

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
            +  K   I +    +    ++ K    +    ++L  +F      +      + D  Y 
Sbjct: 416 IKELKATGIKISKKSY----IRSKMENDLTLTPEILLSIFNTKIGSNTP-IFQVGDEVYF 470

Query: 465 W 465
            
Sbjct: 471 A 471


>gi|114321433|ref|YP_743116.1| hypothetical protein Mlg_2284 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227827|gb|ABI57626.1| hypothetical protein Mlg_2284 [Alkalilimnicola ehrlichii MLHE-1]
          Length = 484

 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 87/512 (16%), Positives = 181/512 (35%), Gaps = 38/512 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR A + WVA   ++V+ +PF++ G   + F+      V  V   ++         
Sbjct: 1   MLEAIRSAVKGWVAWAVVIVISLPFIVVG-GYSYFAGDDGRVVAEVEGVEITREQVAERA 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +Q+   + +  G  + +       L ++  D L+  A L   + D  L      V   I 
Sbjct: 60  RQQQRQLEEFFGD-LGAAGVDESTLRREARDGLIEEALLHVLVTDGNLRVGDRAVAQRIR 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           +  +FH +   FS + +   L+   +   +Y +   + L          G     +    
Sbjct: 119 QQDIFH-QGGTFSMERYQQLLSANRLTPDQYEEMVRRDLLVEQFQRAVTGSALVRDWDTA 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      + R + Y+V++    P     S+A +   +E+  + Y AP   R+ YI     
Sbjct: 178 RLAALDRQQRDIHYLVVSADEAPD--AVSDAAVQAHYEENAERYTAPRQVRLEYIELHQD 235

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           E         D+    +E  ++            + + +      A   L     +    
Sbjct: 236 ELAP------DDSTRFFELTED---------AANVAYEDPDSLQSAADLLGVELSYSDWV 280

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E G +      G + +  + + + +D +       +   +  GS   ++  V +++ + 
Sbjct: 281 PEDGSAE-----GLWGRPEVVEAAFSDDVLEFGYNSELIEL--GSGHALLLRVDDVREAE 333

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
            +   EV  +I  ++   +   + +   + LE  +A G  M E++ RE +       +D 
Sbjct: 334 PLGLDEVADEIRRELAREQGRLQARNLGELLEREIAAGAEMAELAEREGLEVRSAEGLDR 393

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV---ALPDGSYMWVQIKESIPARDR 477
                      +     Q++ R F    P+    +V   ++  G Y  VQ+         
Sbjct: 394 GT--------LSDAVPTQVVDRAFRLPRPVDGQPSVGGTSVQGGDYAVVQVVAVTDGDTD 445

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
             +E     + D + V +  E  +    L  E
Sbjct: 446 LGDEEREHWRADLRQVFSQSEWQALMAGLREE 477



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 93/256 (36%), Gaps = 14/256 (5%)

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
           +++    ++   +              S+   +    ++ ++L   D+  +D   + +  
Sbjct: 235 DELAPDDSTRFFELTEDAANVAYEDPDSLQSAAD---LLGVELSYSDWVPEDGSAEGLWG 291

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
            P   +  F     +   +    + L  G  + +++ +   A    L+EV  +++++   
Sbjct: 292 RPEVVEAAFSDDVLEFGYN-SELIELGSGHALLLRVDDVREAEPLGLDEVADEIRRELAR 350

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
            +   +  +   +L+      G    ++ +  G  + +   ++R    +       + + 
Sbjct: 351 EQGRLQARNL-GELLEREIAAGAEMAELAEREGLEVRSAEGLDR-GTLSDAVPTQVVDRA 408

Query: 553 FSGPVEMVKCFPIEN----GLSYVVFKVTNSKVGPV----QEKDKFISYLTQMMNKDLLD 604
           F  P  +     +      G  Y V +V     G      +E++ + + L Q+ ++    
Sbjct: 409 FRLPRPVDGQPSVGGTSVQGGDYAVVQVVAVTDGDTDLGDEEREHWRADLRQVFSQSEWQ 468

Query: 605 SVIAYLKSQYSVTVHD 620
           +++A L+ +  V + D
Sbjct: 469 ALMAGLREEMDVKLRD 484


>gi|322419880|ref|YP_004199103.1| hypothetical protein GM18_2369 [Geobacter sp. M18]
 gi|320126267|gb|ADW13827.1| hypothetical protein GM18_2369 [Geobacter sp. M18]
          Length = 525

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 94/523 (17%), Positives = 191/523 (36%), Gaps = 40/523 (7%)

Query: 1   MLEIIRKASRTWVAKIF-----LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML I+RK  ++ + KI      L  +   FL+W          G S   +V   K+    
Sbjct: 1   MLGIMRKYKQSIIIKIVFVVIVLSFIGTIFLVW-GKGGSDGQGGKSYAATVNGTKISLDE 59

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F  S+ +  G+  Q  G  +  E  + +G+ K  +++LV    +    + +GL+A    V
Sbjct: 60  FQKSYYRTRGLYEQIYGRSLTPEMEKQMGIKKLTINSLVDNVLIHAEAKKMGLKASKEEV 119

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EIA+ P F  K+  F   ++   L    I  K++ +   + +               +
Sbjct: 120 AAEIAKIPAFQ-KNGAFDFGIYQQTLKANRITPKDFEESQEQEMLLQKARNKVKDAAAVT 178

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +  +  A +   +   + Y+  +   V      ++  LT + + +++ ++ PE   ++Y 
Sbjct: 179 DAEVKAAFKKQKDKIDLAYVSFSPADVKGSIKLTDQELTSYLQDHQNEFKTPEQVSVAYA 238

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFS-------PEIRTVEQLVFPNQKEADEAFQ 288
           L    +   K+ ++ +E+Q  Y+KN ++Y          E++         QK A EA++
Sbjct: 239 LVSPAQFAAKVSVTPEEVQTYYQKNIDRYQGKGGILPFAEVKEQASADAQKQKGAKEAYE 298

Query: 289 SLKKG-KKFIQLAEEQGKSLSDISLGSFSK---------EYIPDVSLADSIFSLAKKGDF 338
                  KF   A+    + S  S    +            + +  +     +L K+G+ 
Sbjct: 299 KAADAVNKFRASADIDAAAASLGSKVEKTPLFSSKAPAAGLVGENEVVARALAL-KQGEL 357

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
              +  + G  +  V + KP+      +++  +  +    KA++  K+  +   + LA G
Sbjct: 358 GGPVETAKGIYLVKVLDKKPAAVPPLSQIRGAVEAKAVEVKAADLAKKKAEEALQQLAKG 417

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            +  E                  G    G  V  I    +L+   F  + P         
Sbjct: 418 AAAKE--------------TGSFGYAATG-AVPTIGTSPELMEAAFALNAPNEAAKQPFK 462

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
               +  V++K    A    L +    +K      K  E +  
Sbjct: 463 VGDRWYAVKLKSRTEAPLTDLAKDSGTIKAALLPKKQQEALDK 505


>gi|229587184|ref|YP_002845685.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia africae ESF-5]
 gi|228022234|gb|ACP53942.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia africae ESF-5]
          Length = 524

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 87/482 (18%), Positives = 200/482 (41%), Gaps = 28/482 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++   ++   F+ +G+ D L        V     + +    F+ + 
Sbjct: 1   MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFVRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+ +IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINVISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVNYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F+  +F +      ++E++Y+ ++ +   +   VG F+        + D
Sbjct: 121 ESPVFKNEQGVFNIKIFKNYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I ++ ++ P    I  P+   L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287
           ++ +   K+ ++ DEL   Y +NK+++             ++   +++   N + A +  
Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG- 344
                G   +++AE+    + +++  S+++  E       ADSIF L++ G+ +  I   
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADSIFELSE-GELSYPIETE 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
              Y+I   + +I+P+    F  +K+ +         ++    + K +++      S  E
Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADV---NLKIIKDLAKEYNSDQE 414

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
             +  K   I +    +    ++ +    +    ++L  +F      +      + D  Y
Sbjct: 415 NIKELKATGIKISKKSY----IRSEMENDLTLTPEILLSIFNTTIGSNTP-VFQVGDEVY 469

Query: 464 MW 465
             
Sbjct: 470 FA 471


>gi|238650847|ref|YP_002916702.1| peptidyl-prolyl cis-trans isomerase [Rickettsia peacockii str.
           Rustic]
 gi|238624945|gb|ACR47651.1| peptidyl-prolyl cis-trans isomerase [Rickettsia peacockii str.
           Rustic]
          Length = 524

 Score =  222 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/482 (17%), Positives = 199/482 (41%), Gaps = 28/482 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++   ++   F+ +G+ D L        V     + +    F+ + 
Sbjct: 1   MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F+  +F +      ++E++Y+ ++ +   +   VG F+        + D
Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I ++ ++ P    I  P+   L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287
           ++ +   K+ ++ DEL   Y +NK+++             ++   +++   N + A +  
Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG- 344
                G   +++AE+    + +++  S+++  E       ADSIF L++ G+ +  I   
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADSIFELSE-GELSYPIETE 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
              Y+I   + +I+P+    F  +K+ +         ++    + K +++      S  E
Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADV---NLKIIKDLAKEYNSDQE 414

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
             +  K   I +    +    ++ +    +    ++L  +F      +      + +  Y
Sbjct: 415 NIKELKATGIKISKKSY----IRSEMENDLTLTPEILLSIFNTTIGSNTP-VFQVGNEVY 469

Query: 464 MW 465
             
Sbjct: 470 FA 471


>gi|15604653|ref|NP_221171.1| hypothetical protein RP822 [Rickettsia prowazekii str. Madrid E]
 gi|3861348|emb|CAA15247.1| unknown [Rickettsia prowazekii]
 gi|292572472|gb|ADE30387.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia prowazekii
           Rp22]
          Length = 528

 Score =  222 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 91/485 (18%), Positives = 207/485 (42%), Gaps = 30/485 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK S +++ ++   ++   F+ +G+ D L     S  V+    + +    F+ + 
Sbjct: 1   MLDNIRKTSDSFIMRVLFAIIAFAFVGFGIKDILNVRRNSDIVIFSHAKNISKQDFLQAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS+++G  +  E    + +D +IL  L+    LD  +    L+     V   + 
Sbjct: 61  SLEINAISKQMGKSLIDEEITQLNIDNRILKRLIYNNILDYLVSYYDLDLGDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F  ++F +      I E++Y+ ++ + + +  +V  F         + D
Sbjct: 121 ESPMFKNEQGVFDIEIFKTYFKNAYIGEEKYLLNFKEKVLKNLIVSTFAKSFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I L+ ++ P    I  P++  L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQLDLQNKPKDLQIHTPTDQQLKDFYQDNKAAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287
           ++ +   KI ++ DEL   Y +NK+++             ++   +++   N + A +  
Sbjct: 241 NIKDF--KISVTQDELLEFYNENKDEFGDQSFEAVQTQLHDLLRAKKIDILNMELAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIPD--VSLADSIFSLAKKGDFTPV 341
             +  G   ++++E+    + +++  S+++      + D     ADSIF L++     P+
Sbjct: 299 DEIASGASLVEISEKYKLPIQNVNYVSYAELIGDNIMADNIAESADSIFELSEGELSYPI 358

Query: 342 IHGSFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
                 Y+I   + +I+P+    F  +K  + N++ I +  E V   +K +++      +
Sbjct: 359 EAEDKSYLILVELKSIQPAQIPKFNAIKDQV-NKVWIKRNIEDVN--FKMIKDLAKEYNA 415

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
             E  +    V I +   ++   +++      +    ++L  +F      +      + D
Sbjct: 416 DPEQIKDFNAVGIKISKKNYIRMEIE----NDLTLTPEILLSIFNTKIGSNTP-VFRVGD 470

Query: 461 GSYMW 465
             Y  
Sbjct: 471 IVYFA 475


>gi|34581133|ref|ZP_00142613.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262518|gb|EAA26022.1| unknown [Rickettsia sibirica 246]
          Length = 524

 Score =  222 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/482 (18%), Positives = 201/482 (41%), Gaps = 28/482 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++   ++   F+ +G+ D L        V     + +    F+ + 
Sbjct: 1   MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+ +IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINVISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F+  +F +      ++E++Y+ ++ +   +   VG F+        ++D
Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIKSFYVPKAMID 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I ++ ++ P    I  P+   L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287
           ++ +   K+ ++ DEL   Y +NK+++             ++   +++   N + A +  
Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG- 344
                G   +++AE+    + +++  S+++  E       ADSIF L++ G+ +  I   
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADSIFELSE-GELSYPIETE 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
              Y+I   + +I+P+    F  +K+ +         ++    + K +++      S  E
Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKWNIADV---NLKIIKDLAKEYNSDQE 414

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
             +  K   I +    +    ++ +    +    ++L  +F      +      + D  Y
Sbjct: 415 NIKELKATGIKISKKSY----IRSEMENDLTLTPEILLSIFNTTIGSNTP-VFQVGDEVY 469

Query: 464 MW 465
             
Sbjct: 470 FA 471


>gi|157964968|ref|YP_001499792.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia massiliae MTU5]
 gi|157844744|gb|ABV85245.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia massiliae MTU5]
          Length = 525

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/482 (18%), Positives = 200/482 (41%), Gaps = 28/482 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++  V++   F+ +G+ D L        V     + +    F+ + 
Sbjct: 2   MLDNIRKTADSFIMRVLFVMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 61

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 62  SLEINAISKQTGTSLTDEEIAKLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 121

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F+  +F +      ++E++Y+ ++ +   +   VG FV        + D
Sbjct: 122 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFVESFYVPKAMTD 181

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ + ++ ++ P    I  P++  L  +++  K  +  PE +  SYI  
Sbjct: 182 NIVDYMAEKREVELVQIDLQNKPKDLQIPTPTDQQLKDFYQDNKTAFEVPEKRSFSYIKA 241

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287
           ++ +   K+ ++ DEL   Y +NK+++             ++   +++   N + A +  
Sbjct: 242 NIKDL--KVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 299

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG- 344
                G   +++AE+    + ++   S+++  E       ADSIF L++ G+ +  I   
Sbjct: 300 DETAAGSSLVEIAEKYKLPIQNVHYISYAELIEDKIIAENADSIFELSE-GELSYPIETE 358

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
              Y+I   + +I+P+    F  +K+ +         ++    + K +++      S  E
Sbjct: 359 DKSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADV---NLKIIKDLAKEYNSDQE 415

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
             +  +   I +    +   +++      +    ++L  +F      +      + D  Y
Sbjct: 416 NIKELQATGIKISKKSYIRSEMED----DLTLTPEILLSIFNTKIGSNTP-VFQVGDEVY 470

Query: 464 MW 465
             
Sbjct: 471 FA 472


>gi|15893195|ref|NP_360909.1| hypothetical protein RC1272 [Rickettsia conorii str. Malish 7]
 gi|15620408|gb|AAL03810.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 524

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/482 (17%), Positives = 199/482 (41%), Gaps = 28/482 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++   ++   F+ +G+ D L        V     + +    F+ + 
Sbjct: 1   MLDNIRKTTDSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F+  +F +      ++E++Y+ ++ +   +   VG F+        + D
Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I ++ ++ P    I  P+   L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287
           ++ +   K+ ++ DEL   Y +NK+++             ++   +++   N + A +  
Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG- 344
                G   +++AE+    + +++  S+++  E       ADSIF L++ G+ +  I   
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADSIFELSE-GELSYPIETE 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
              Y+I   + +I+P+    F  +K+ +         ++    + K +++      S  +
Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADV---NLKIIKDLAKEYNSDQK 414

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
             +  K   I +    +    ++ +    +    ++L  +F      +      + D  Y
Sbjct: 415 NIKELKATGIKISNKSY----IRSEMENDLTLTPEILLSIFNTTIGSNTP-VFQVGDEVY 469

Query: 464 MW 465
             
Sbjct: 470 FA 471


>gi|258545268|ref|ZP_05705502.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
 gi|258519481|gb|EEV88340.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
          Length = 610

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 100/635 (15%), Positives = 231/635 (36%), Gaps = 59/635 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+     +  + +++  +  L  G+    F+  G + + +V  Q+VP      ++
Sbjct: 25  MLEDIREKKTNRITYLLVIIAGIGMLFIGVP--YFNHGGETNIATVNGQEVPL----RAY 78

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++   I Q+   +  ++      L ++ + +LV      Q   +         ++  I 
Sbjct: 79  QEQYRDIQQQQPDLSETD------LKQRAVRSLVERTLFQQQALNSRYRLPDSALYRIIK 132

Query: 121 RSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
                     +F + + +   L   GI+ + Y        S              +N L 
Sbjct: 133 E---------QFGNDENYQQWLKSRGISAETYQQSVRSDQSIASYYSALQAAGGENNPLY 183

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
               +   + R      +    + A  + +++ L + +E + + Y  PE   I+Y ++D+
Sbjct: 184 QHYLQSAAQERGYTLYTIPRAPIAAAINVNDSALQKHYEAHGERYATPETVDINYTIYDI 243

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQ 298
            +      +S++++            + E R    L+  + K A +A  ++K G K F  
Sbjct: 244 ADLP----VSDEQIAKA-------RAASERRGGRYLIIDDAKAASDAAAAIKDGRKTFAD 292

Query: 299 LAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
             ++   +  +     L   +K       L +++F+LAK GD +P+I   +G ++  + N
Sbjct: 293 YWQDIQNKTLAGESGELALAAKGKGTSPELDEALFALAKPGDVSPLIDSEYGKILVELGN 352

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+     S +E++     ++  ++      E   +  +    G  +  I     I     
Sbjct: 353 IETG-NRSDEELR-----RLAASENETAYTEHANQAFDAAQNGKGLAAI---TGITGGQT 403

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
             +     D         P  +  LF      D       V +     ++  + +    +
Sbjct: 404 QSLSAITADSDAAPWLHEPKIQAQLFGAQALPDN-KVGEPVEIGPQRTLFFTVSKREKPQ 462

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
            R   +V   V+ D++  +    +  + + L    ++  +    +     A   T    N
Sbjct: 463 PRPFADVRAQVETDYRNEQANTTLHERGDALKQALAESPEKAAALASEYQAKSETVAPAN 522

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKFISYL 594
           R   +N       + ++F+     +      +G   +V ++ + + G P Q  +     L
Sbjct: 523 RYTTQN-----PLVLELFN-QSARISSLDTPDGD-LLVARLDSVRDGDPAQLPEPVRQTL 575

Query: 595 TQMMNKD----LLDSVIAYLKSQYSVTVHDNLIQR 625
           TQ         +  S+  +L  Q  ++V++  +QR
Sbjct: 576 TQAWQMQAISGVYKSMGDWLYRQAKISVNEEALQR 610


>gi|157829104|ref|YP_001495346.1| hypothetical protein A1G_06985 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933829|ref|YP_001650618.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str.
           Iowa]
 gi|157801585|gb|ABV76838.1| hypothetical protein A1G_06985 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908916|gb|ABY73212.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str.
           Iowa]
          Length = 524

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 86/482 (17%), Positives = 198/482 (41%), Gaps = 28/482 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  IRK + +++ ++   ++   F+ +G+ D L        V     + +    F+ + 
Sbjct: 1   MLNNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F+  +F +      ++E++Y+ ++ +   +   VG F+        + D
Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ I ++ ++ P    I  P+   L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287
           ++ +   K+ ++ DEL   Y +NK+++             ++   +++   N + A +  
Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG- 344
                G   +++AE+    + +++  S+++  E       AD+IF L++ G+ +  I   
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADNIFELSE-GELSYPIETE 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
              Y+I   + +I+P+    F  +K+ +         ++    + K +++      S  E
Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADV---NLKIIKDLAKEYNSDQE 414

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
             +  K   I +    +    ++ +    +    ++L  +F      +      + D  Y
Sbjct: 415 NIKELKATGIKISKKSY----IRSEMENDLTLTPEILLSIFNTTIGSNTP-VFQVGDEVY 469

Query: 464 MW 465
             
Sbjct: 470 FA 471


>gi|51473990|ref|YP_067747.1| hypothetical protein RT0810 [Rickettsia typhi str. Wilmington]
 gi|51460302|gb|AAU04265.1| rickettsial conserved hypothetical protein [Rickettsia typhi str.
           Wilmington]
          Length = 526

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 90/473 (19%), Positives = 197/473 (41%), Gaps = 31/473 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK S +++ ++   ++   F+ +G+ D L     +  V+    + +    F+ + 
Sbjct: 1   MLDNIRKTSDSFIMRVLFAMIAFAFVGFGIKDILNVRRNNDIVIFSHARNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++IG  +  E    + +D +IL +L+    LD  +    L+     +   + 
Sbjct: 61  SLEINAISKQIGKSLTDEEIIQLNIDNRILKSLIYNNILDYLVSYYDLDLGDDTIKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F      F   +F +      I E +Y+ ++ + + +  +V  FV        + D
Sbjct: 121 ESPIFKNAQGVFDIKIFKTYFRNAYIGEDKYLLNFKEQVLKNIIVSTFVKSFYVPKSMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ + L+ ++ P    I  P++  L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAERREVELLQLDLQNKPKDLQIHTPTDQQLKDFYQDNKAAFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE---QLVFPNQK-------EADEAF 287
           ++ +   KI I+ DEL A Y +NK+++       V+     +F  +K        A++  
Sbjct: 241 NIKDL--KISITQDELLAFYNENKDEFGDQSFEAVQTQLHDLFRAKKFDILNMEFANKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIPD--VSLADSIFSLAKKGDFTPV 341
             +  G   ++++E+    + +++  S+++      I D     ADSIF LA+     P+
Sbjct: 299 DEIASGASLVEISEKYKLPIQNVNYLSYAELIEDNIIADNIAENADSIFELAEGELSYPI 358

Query: 342 IHGSFGY-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
             G   Y ++  + +I+P+    F  +K  +          ++  +  K L +    G  
Sbjct: 359 EAGDKSYLLLVELKSIQPAKIPKFDAIKDQVNEVWIKRNIEDENLKMIKDLAKEYNAGQK 418

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
                +   +  I +    +    ++ +    +    ++L  +F      +  
Sbjct: 419 -----KEFNVAGIKISRKSY----IRAEMENDLTLTPEILLSIFNTKIGSNTP 462



 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 95/264 (35%), Gaps = 14/264 (5%)

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
            SF+ V+  + +  R  K      E   +LE+ +A G S+ EIS + K+   ++  + +A
Sbjct: 268 QSFEAVQTQLHDLFRAKKFDILNMEFANKLEDEIASGASLVEISEKYKLPIQNVNYLSYA 327

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW-VQIKESIPARDRKLE 480
                      I      +F +          + +   D SY+  V++K   PA+  K +
Sbjct: 328 ELIEDNIIADNIAENADSIFEL----AEGELSYPIEAGDKSYLLLVELKSIQPAKIPKFD 383

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
            +   V + W      +E       L  EY+   K   ++    G  +   + I      
Sbjct: 384 AIKDQVNEVWIKRNIEDENLKMIKDLAKEYNAGQKKEFNVA---GIKISRKSYIRAEMEN 440

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD---KFISYLTQM 597
           +     + +  +F+  +          G       + +S +  +  ++      + +   
Sbjct: 441 DLTLTPEILLSIFNTKIG-SNTPVFRVGDVVYFAHIKSSSIDELTAQNIHVNLENNIIYN 499

Query: 598 MNKDLLDSVIAY--LKSQYSVTVH 619
           +   +++ +I Y  +++   +  +
Sbjct: 500 IKNSVIEELINYTIMQNDMKIKYN 523


>gi|67459692|ref|YP_247316.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia felis
           URRWXCal2]
 gi|67005225|gb|AAY62151.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia felis
           URRWXCal2]
          Length = 524

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 89/483 (18%), Positives = 199/483 (41%), Gaps = 28/483 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IRK + +++ ++   ++   F+ +G  D L        V     + +    F+ + 
Sbjct: 1   MLDNIRKTADSFIMRVLFAMIAFAFVGFGFKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E+  IS++ G  +  E    + +D +IL  LV    LD  +    L+     V   + 
Sbjct: 61  SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVGYYDLDLSDDTVKILVK 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            SP+F  +   F   +F +      ++E++Y+ ++ +   +   VG FV        + D
Sbjct: 121 ESPVFKNEQGIFDIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGSFVESFYVPKAMTD 180

Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               +  E R V+ + ++ ++ P    I+ P++  L  +++  K  +  PE +  SYI  
Sbjct: 181 NIVDYMAEKREVELVQIDLQNKPKDLQISTPTDQQLKVFYQDNKTVFEVPEKRSFSYIKA 240

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287
           ++ +   K+ I+ DEL   Y +NK+++             ++   +++   N + A +  
Sbjct: 241 NIKDL--KVSITQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA---DSIFSLAKKGDFTPVIHG 344
                G   +++AE+    + +++  S++ E I D  +A   DSIF L++     P+   
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAENVDSIFELSEGELSYPIEAE 357

Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
              Y+I   + +I+P+    F  +K+ +         ++    + K +++      S  E
Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQVNKVWIKQNIADV---NLKIIKDLAKEYNSDQE 414

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
             +  K   I +    +    ++ +    +    ++L  +F      +      + D  Y
Sbjct: 415 NIKELKAAGIKISKKSY----IRAEMENDLTLTPEILLSIFNTKIGSNTP-IFQVGDEVY 469

Query: 464 MWV 466
              
Sbjct: 470 FAY 472


>gi|152990776|ref|YP_001356498.1| hypothetical protein NIS_1031 [Nitratiruptor sp. SB155-2]
 gi|151422637|dbj|BAF70141.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 490

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 160/399 (40%), Gaps = 25/399 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  ++K  +  V  I++  +      F+ WG        S S  V  VG +K+    F 
Sbjct: 1   MISWMQKHKKYLVITIWISTIAFVGAGFVGWGAYKY---GSASDAVAEVGNEKITLKEFQ 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             +       ++ +   ++ E+A+ +GLDK +L+ L+  A L+ +  D+GL      V  
Sbjct: 58  QRYANVYNYYNKMLQGKLDQEQAKKMGLDKMVLNELIQEALLENYAHDLGLIVTDEEVAQ 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           +IA   +F  ++  F   ++   L +  I  K++     K L    +    +   +P  L
Sbjct: 118 KIASMKVF-WQNGHFEKSLYNKLLQQNRIKPKDFEQSIRKELLLNKLHQALLYS-KPLQL 175

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             D      F    ++Y VL ++ +      +   L ++++K+K+ Y+      +S I  
Sbjct: 176 EFDTMASALFMGDKIEYTVLTDKDI--DVTVTRTELKKYYDKHKNEYKTAPKYDLSIIEM 233

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
            +       ++S +EL++ Y++N+ KY     +     + P  K   +    L   K   
Sbjct: 234 PIKHF----KVSEEELKSYYKQNRLKYKDANGK-----ILPFDKAKKQVMHDLDIKKSKK 284

Query: 298 Q-----LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           +     +  ++GK  +   L          + L   I   ++     P++     YVI  
Sbjct: 285 EALKKYIQFKKGKLQAQKHLIVAQNNTSFPLPLMQKIAQASQNSVLKPILVEDR-YVIVK 343

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           V+   P   + F++   ++   +   K  + + E  K++
Sbjct: 344 VNKKIPPLPMPFEKAVTEVKKDLLQQKRYQLLLEKAKKM 382



 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
            L +  Y+ V++ + IP      E+ +T+VKKD    K  + +  KA ++V
Sbjct: 333 ILVEDRYVIVKVNKKIPPLPMPFEKAVTEVKKDLLQQKRYQLLLEKAKKMV 383


>gi|299138720|ref|ZP_07031898.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX8]
 gi|298599356|gb|EFI55516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX8]
          Length = 656

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 91/636 (14%), Positives = 221/636 (34%), Gaps = 48/636 (7%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSS--TVVSVGRQKVPFSSFINSWKQELGMISQK 70
           +  + +    +  +I  +     + + ++     ++    +       S + ++  + ++
Sbjct: 15  IFALIIGAAIITMVITLVPGIFDNGANNNPSVFATIHTPGIFGKIVGESQQVQMADVQRQ 74

Query: 71  IGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR--SPLF 125
               +         +  L  ++    V    L    + +GL+     +   + +     +
Sbjct: 75  TMQQIQQQHLPEQYAPLLAGRVGQQQVERKVLALEADRLGLQVSDEDLRSFMQKGTLSQY 134

Query: 126 HGKDNKF-SHDVFVSRLAR-EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
                KF   D + + + +   I+  E+       L    +  +   G+  S+  +    
Sbjct: 135 IFPGGKFIGTDQYTNFVQQYFQISVPEFEAEVKSDLELQRLQSLVTAGVTVSDAAVRADY 194

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA--PEYKRISYILFDVHE 241
                    DY V+    +    +PS+A L  +F+++   Y    PE +++    FD   
Sbjct: 195 MQQGTKVKFDYAVIAASDIKKTINPSDADLQAFFKQFAARYATAIPETRKLELFSFDASN 254

Query: 242 KE-KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAFQ 288
               K ++++ ++QA Y  + ++Y  PE      ++    K            +A++  +
Sbjct: 255 IPGGKPQVNDADVQAYYNAHLDQYKLPEQVKTRHILITVAKGADAKTDAAAKAKAEDILK 314

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSF-----SKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            ++ G  F  LA++          G       +  ++P+ S   +  +L   G  + ++ 
Sbjct: 315 QIRAGGNFADLAKKNSDDPGSKDQGGELPLMPTSGFVPEYS--KAAMAL-NPGQTSDLVR 371

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             FGY I      + + T +  E K  I   ++  KA         +L    A     + 
Sbjct: 372 SQFGYHIIQTEQKEAAHTKTLAETKDTIVPLLQQQKAGAAELNFANQL----AAEAKKNG 427

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
           + +     S+ L   D+ G D     +A++     +L + FG           A     Y
Sbjct: 428 MQKTADAHSLHLVTTDYIGHD---GVIASLADSSNVLTQAFG--VAKGAAPATASTGEGY 482

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
              Q+ +   A      +    +  D++  K  E ++S+  +L  + +K   + +     
Sbjct: 483 AVFQVDDIKAAHAPDFADYKPHILDDYREQKAPELLNSQLIKL-ADRAKVLNDLKKAAAE 541

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
           +   + T++ + R           G +  VFS P   +   PI  G +  V ++ + +  
Sbjct: 542 MNVPVKTSDLVGRDAQVPDLGALTGPASVVFSLPKGGI-SGPINEGPNGSVIQLADKQEP 600

Query: 583 PVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQY 614
              +           L  +  +++ +  +  L  +Y
Sbjct: 601 TADDIAKNLPTSREKLLNVKREEIFNVFVGSLMDKY 636


>gi|330721964|gb|EGG99902.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC2047]
          Length = 471

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/480 (15%), Positives = 180/480 (37%), Gaps = 32/480 (6%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +    +          +   +D   R   + R   Y+ +N   + A    S+A +  ++E
Sbjct: 1   MLIQQMQLGIASSAFITPAEIDLLARIDRQTRDFSYLTINANELAADIVISDAEVQAYYE 60

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           +   +Y + E  +I Y+     +    I++   E++  Y++  +   + + R    ++  
Sbjct: 61  ENLADYMSEESLKIEYLELKQADFASNIDVDEAEIEQLYQQETDALAAQQERRAAHILIT 120

Query: 279 NQK----EAD----EAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLA 326
            +     EA+    E    +K G+ F +LA+    + G + +   LG   K         
Sbjct: 121 EEARSSNEAEQLIIELQNKIKAGEDFAELAKRYSEDPGSAENGGDLGFVEKGAFV-PEFE 179

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
             +FSL  +G+ + ++   FGY +  +  ++      F+  ++ +A ++R  KA E+   
Sbjct: 180 QVLFSL-NEGEVSDIVETEFGYHLIRLEELRTPEAEPFEMARERLAGELRFRKAEEEFVA 238

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
             + L+        + E ++ + +               +G  +AA     ++ F     
Sbjct: 239 AAEELQNDSFSAGDLVEPAQNQGLSIQTTEFFSR----QQGSGIAAFEKVRRVAFSDELL 294

Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
            +  + D  + L       +++K+  P++ + LEEV +D++   K     +       Q+
Sbjct: 295 TEGNNSD-LIELSKDHVAVIRVKQHNPSKPQALEEVASDIRSTLKARAAQQNAQKMGEQI 353

Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKC 562
           ++E  ++GK  +    + G  L +   +NR+ N+      + + ++F+            
Sbjct: 354 LVEL-RDGKTLQQASDDYGYPLNSYQGVNRIAND---VDSEILDELFALAKPRDSGATTG 409

Query: 563 FPIENGLSYVVFKVTNSKVGPVQ-----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             I +   +V+  +     G        EK      L Q      L   ++   +   + 
Sbjct: 410 SLINSQGDFVILSLNKVSEGDASALSDPEKQAMSRILAQQTGIQTLKEFVSGQLASAEIE 469


>gi|222824176|ref|YP_002575750.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter lari RM2100]
 gi|222539398|gb|ACM64499.1| conserved hypothetical protein, putative peptidyl-prolyl cis-trans
           isomerase D [Campylobacter lari RM2100]
          Length = 492

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 98/487 (20%), Positives = 192/487 (39%), Gaps = 59/487 (12%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++ V+      F+ WG     F+   S++V  VG +K+ +  F 
Sbjct: 1   MLTWMQHHKKYLVVTIWISVIAFVGAGFVGWG--SYDFNTDRSNSVAKVGDEKISYDEFN 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + Q  G  SQ        E+A+  GLD + ++ L+    L  + + +GL      +  
Sbjct: 59  LKYSQLFGYYSQLNNGNYTQEQAQKDGLDTQAINELIQEKLLLSYAKTLGLNVSEEEIAY 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++A   +FH     F  +++ + LAR     K Y       L    +  +    ++P+ L
Sbjct: 119 DLAHQKIFHNASGVFDKNLYYNLLARNNYTPKTYEKIIHDELLLKKINAILNLQIKPNEL 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +  A     ++  V  I L+N+++          L Q +EK K+ Y+      ++    
Sbjct: 179 DMFGASFLMQDSLKVQAIKLDNKNI----TMDEKELKQTWEKNKELYKTQRSYELATYFL 234

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-----------KEADEA 286
           +       I+I + E+QA YE+NK  Y     + +      ++            +A+E+
Sbjct: 235 NPDI----IKIDDKEIQAYYEENKNDYKDFAGKILSLEQSKDKVIKDLKLSKLKLKANES 290

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           + +L+K     +L  ++  ++SD  +      Y P  ++  +     K+ DF        
Sbjct: 291 YVALRKN----ELNFDKNITISDADV------YYPLENIQKA-----KENDFIKPFKFEN 335

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           GY+IA V  I P  T++F++ K +++      K    ++E  K   +             
Sbjct: 336 GYMIAKVIKINPIQTMTFEQAKNEVSKLYIKEKTKALLEEKAKIALD------------- 382

Query: 407 REKIVSIDLPL-VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
                 ID+      + K+ K  E+       + L  VF      +K  +  L D   + 
Sbjct: 383 --NFQGIDIGTYSRDSSKNAKVGEMMNDTEFSEFLMHVFDS----NKAKSYVLFDDKAIV 436

Query: 466 VQIKESI 472
            +I +  
Sbjct: 437 YEITKQT 443


>gi|153004233|ref|YP_001378558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027806|gb|ABS25574.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 523

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 81/540 (15%), Positives = 184/540 (34%), Gaps = 63/540 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSD----ALFSVSGSSTVVSVGRQKVPFSS 55
           MLE +R      +  IFL  + + F+I +G          + +G+S    V  + +P   
Sbjct: 1   MLEGLRANKGGIITWIFLGAIILVFVISFGPGSLNQGGGCAGAGASYAAKVNGKTIPAVE 60

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           +   + Q   +   ++G     E A  +GL ++ L  LV    + Q  ++ G+      +
Sbjct: 61  WERQYSQLYDLYQSQMGGGFTRELAAQLGLAEQALSQLVDRELVIQEAKERGIVVSDEEL 120

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I   P FH     F  + + +   +   +  ++   Y + L    ++      ++ S
Sbjct: 121 SSAIHAIPAFHR-SGAFHFETYEAAARQNFGSPAKFESWYREQLLYGKMLAAVGETVKVS 179

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
              + +A +   +  S+ ++        A   PS+A +  + EK                
Sbjct: 180 GAEVKEAWQADADKLSLSFVRFPLAAFQAEVKPSDAEVKAFAEK---------------- 223

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV---------FPNQKEADEA 286
                            ++  ++ N  ++   +   V  ++            +K+ +EA
Sbjct: 224 -------------DGARIEQFHKDNAARFDQQKKVRVRHVLARVTPGADDAAARKKIEEA 270

Query: 287 FQSLKKGKKF----IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
              +K+G+ F      L++++G       LG  ++  + D   A +  +L ++G  +  +
Sbjct: 271 AARVKQGEAFEKVVAALSDDEGTKARGGDLGFVTEG-LFDEQFAKAALAL-EQGQVSAPV 328

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKRLEEFLALGTSM 401
             + G+ +     + P+  VS  + + DIA + ++  +A +   E  +        G  +
Sbjct: 329 RSASGWHLVKAEEVVPAKKVSLADARLDIARELLQQDRARKLAAERAQAAHAAARSGKPL 388

Query: 402 D-----------EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
                         +   K+    +   +          V  +    +L+          
Sbjct: 389 AQQFPDAEAAKKAKATPVKVGGQTIAAEETGTFTASSPFVPKLGPAAELVGAARAAKAGE 448

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
                  LP G  + V +       ++  E     V +  +  K A+ VS     L  + 
Sbjct: 449 VLPKVYDLPAGPVVAV-VTARETPDEKAFEGARDQVAERLRNEKEAQVVSRWLEGLRKDA 507


>gi|146329199|ref|YP_001209808.1| peptidylprolyl cis-trans isomerase [Dichelobacter nodosus VCS1703A]
 gi|146232669|gb|ABQ13647.1| peptidylprolyl cis-trans isomerase [Dichelobacter nodosus VCS1703A]
          Length = 621

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 91/634 (14%), Positives = 214/634 (33%), Gaps = 50/634 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + + +          + V  +  +  G+   L      +TV  V    +    F    
Sbjct: 21  MADAVSEKKGNRFTYALVGVAGLGVVFIGVP-ILTPKYQPATVAQVNGISIEQHDF---- 75

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            + +  + Q++  + + E      + +  L  +++   L Q     G  A    ++  + 
Sbjct: 76  NRMVSHLQQRLTNIPSKE------VRELALQQIINETLLRQHALQSGYLASRQDLYTAVK 129

Query: 121 RSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
                     +F  ++ +   L  + I  + Y       L+ +    +    +   + L 
Sbjct: 130 A---------QFGDNETYEKWLKSQRITAQNYEAGLYHDLTVSQYYQLLGKTVFIGDELQ 180

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           +   R + + R V    L      A    +  VL  ++E+ +  Y + E   + Y++ D 
Sbjct: 181 NAFYRLFSQQRDVTLFTLPLAEKIASVKTTPEVLRAYYEENRARYMSDETVSVRYVILDA 240

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298
                  EIS  EL A     +    + + R  + ++F ++  A++   +L +G+  F  
Sbjct: 241 AHLAGNAEISEQELAAA----RAAMVNDDRRDGQYIIFDDKAVAEQTAAALAQGERSFAD 296

Query: 299 LAEEQGKSLSDISLGSFS---KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +     K       G F    K   P     + +FSL K GD + +    +G ++  +  
Sbjct: 297 IVAAIEKKELAGQSGLFDLHKKGEGPSEKADEVLFSLQKTGDTSALFDTEYGAMLVQLGK 356

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           +  +      E    + +++   K  E+         + +  G ++D+I+   K     L
Sbjct: 357 VVAA---DLDEAA--LRSKLLAEKNQERYTHLANEAFDTVVRGGTIDDIAALAKSAPQQL 411

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
             +                  + +LF              + L +   ++ ++   +  +
Sbjct: 412 SQITAHTAQPD---WLTKAELQNVLFGADAM-ATGKLGTPIELDETRSLFYEVDARVLPK 467

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR--DIGKNLGASLLTTNQ 533
           +   E+V T V +D++T +  + +   A+ L  +    G +     +G++  A      +
Sbjct: 468 ELPYEQVETQVTRDYRTDEAKKALRITADTLATQLV-AGDDLDTQTLGESAKAVYQKIGE 526

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV----VFKVTNSKVGPVQEKDK 589
               +  +       + Q      E V      NG   V         +    P +  D 
Sbjct: 527 FKVPEKMDNAIFQQVMQQ-----HEKVAQLEATNGDLVVSRIDAVYDGSVDAVPKEAVDL 581

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           F   +      D +     +L+ + ++  + +L+
Sbjct: 582 FNQQMVLTYQTDAMRGYTDWLRQRANIKTNQSLL 615


>gi|226227335|ref|YP_002761441.1| peptidyl-prolyl cis-trans isomerase [Gemmatimonas aurantiaca T-27]
 gi|226090526|dbj|BAH38971.1| peptidyl-prolyl cis-trans isomerase [Gemmatimonas aurantiaca T-27]
          Length = 610

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 95/640 (14%), Positives = 212/640 (33%), Gaps = 71/640 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFIN 58
           ML+ +R A++     I +  +   FL++  S       V+ ++++ +V  +++  +++ N
Sbjct: 1   MLQSMRSAAKYIWIFIIVAFVG-SFLLYETSGLAGRAPVTTTTSIATVNGEEILLTTWQN 59

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           +         Q+ G  V  +      L+ +  D +V+   L Q  +  G+      V   
Sbjct: 60  AVNSLEQQQQQQSGRGVTLDE--RQQLEDRAFDEIVTEILLQQEYKRRGITVTDEEVVQA 117

Query: 119 IARSPLFHG-------KDNKFSHDVFVSRL-----AREGINEKEYIDHYTKMLSRTDVVG 166
              SP            D KF    ++  L      + G+        Y   + +  +  
Sbjct: 118 ARVSPPPQATSSPDLQTDGKFDMQKYLRLLSSPMARQSGM-LAGLEAFYRNEIPKQKLFD 176

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYR 225
               G   S+  L Q  R   ++ +V ++VL    +       ++A ++Q++++ K  Y 
Sbjct: 177 QVASGAYVSDERLWQVYRDRHDSAAVSFVVLRTDALTDTSVTVTDAEISQFYDRNKKRYE 236

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
            P    +S +            ++  +                               D+
Sbjct: 237 RPGRAIVSLLTVPR-------TVTAAD-----------------------SAAAHTRIDQ 266

Query: 286 AFQSLKKGKKFIQLAEEQGKS-LSDISLGSFSKEY--IPDVSLADSIFSLAKKGDFTPVI 342
               +  G KF  +A+ +    LS    G+  K           ++ ++L K G+ +  +
Sbjct: 267 IRAEIVGGAKFEDVAKRESTDSLSGAQGGALGKGGRNRFTPKFEEAAYAL-KVGELSQPV 325

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
              FG+ I  V + K            D+ + +     ++       R  + LA   +  
Sbjct: 326 LTPFGWHIIRVDDRKGDTL--------DLRHILVTVGQTDSSATRTDRRADSLANLGASQ 377

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
           E +++    +  L L       V+ + ++        +           +   +     +
Sbjct: 378 EDAKKFDDAAKALGLTAAQMVVVEKEPLSFAGRYVPSVSAWSFSGVRPGESSDLFDSPEA 437

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
           Y   ++        + L EV  D+++     K  E++      LV               
Sbjct: 438 YYIARLDSLTKGGPQSLAEVKDDIRRRLARDKRIEKLRPDGEALVAAARSG--TLEAAAA 495

Query: 523 NLGASLLTTNQINRMDNENKFFGYD-GISQVFSGPVEMVKC-FPIENGLSYVVFKVTNSK 580
             G ++  +   +R+D       +   I   F  PV  V   F  ++G+  VV ++ +  
Sbjct: 496 AKGLTVEKSAGFSRVDAVPGLGQFTQAIGGAFMVPVGQVGGPFRAQDGM--VVLRIDSRN 553

Query: 581 VGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
                    EK      L Q + +  +D  ++ L+    +
Sbjct: 554 DAKRDAFEAEKASQRGQLLQSLRQQRIDEYLSNLRENTKI 593


>gi|313681990|ref|YP_004059728.1| hypothetical protein Sulku_0862 [Sulfuricurvum kujiense DSM 16994]
 gi|313154850|gb|ADR33528.1| hypothetical protein Sulku_0862 [Sulfuricurvum kujiense DSM 16994]
          Length = 488

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 89/495 (17%), Positives = 177/495 (35%), Gaps = 54/495 (10%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  +++  +  V  I++     +   F+ WG  +       +  V  VG   +  +   
Sbjct: 1   MITWMQRHRKYLVITIWISTIAFIGAGFVGWGQYNY---GDKAGAVAKVGDISITSAELQ 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            S+       +Q      + ++A+  GL ++ L  LV+ A +       GL      +W 
Sbjct: 58  KSYSNLFNQYNQLFQGKFDEKQAQQFGLQRQALRQLVNQALVLNLANSYGLTVTDQELWD 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     F  KD  F    +   L +  +  KEY +   K L     + +   G++P  +
Sbjct: 118 VIKSQSAF-SKDGTFDKSTYAEVLKQNRLTIKEYEESMKKELLIQKTLYLLSSGVKP--I 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +        +  + Y +L    +     P++A L  ++EK   +++      ISY+  
Sbjct: 175 EENTLADALGVSDKISYKILTPDMIS--LAPTDAELKAFWEKRSGDFKTTPSYEISYVTQ 232

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE------QLVF-----PNQKEADEA 286
                      S  E+   Y+ N++   + E + +        +V        +KEA   
Sbjct: 233 TPITAAP----SQKEISDYYDINRQMLKNGEGKVLSLQEAQPIIVAALNEKATEKEALRL 288

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           +   KKG      + + G      ++      + P+  L   I  L+ +  F      S 
Sbjct: 289 YIDYKKG------SLKPGMKPQTATVTKSVSPFAPE--LTKEITELSTEKAFLKPRKVSN 340

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           GYVI  +  + P+   +++E K D+           K++E  +        GT+ D ++R
Sbjct: 341 GYVIVKLDKMDPARPKTYEEAKTDVMALYLNDTKKTKLQELAQN-SYKTFSGTTTDYLTR 399

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
           +E      L                + P   + L ++F       K   + L  G+ +  
Sbjct: 400 KESAKIAGL----------------SEPEGSEFLSKLFAS---KQKQGFITLESGNVIMY 440

Query: 467 QIKESIPARDRKLEE 481
            + E    +DR L +
Sbjct: 441 NVLEQKLLQDRTLAD 455


>gi|296313658|ref|ZP_06863599.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           polysaccharea ATCC 43768]
 gi|296839799|gb|EFH23737.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           polysaccharea ATCC 43768]
          Length = 512

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/495 (15%), Positives = 175/495 (35%), Gaps = 54/495 (10%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  GS  +V VG +K+   S   + + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGSDYIVQVGDEKISDHSINVTMQNE-----QAAGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             +            +  +L+  A L Q  + +G+     ++   I   P FH    KFS
Sbjct: 65  SPS---------RDAVFQSLLQRAYLKQGAKLMGISVSQEQIKQIIVDDPNFHDAGGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+  S+   +Q  +    NR++ 
Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVSDTQAEQLVKLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  YE+   +  +   +      F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAYEERMARLPAEGEKP----SFEKEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLDEAAKNSGLKVETQDTWLSRQDTQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
            + +     ++   T+ F+E K  +       +A++  +   K     L+ G ++D    
Sbjct: 351 AW-VVRAKEVREEKTLPFEEAKDAVRQAYIRAEATKLAENKAKETLAQLSGGKAVDVKWS 409

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
              ++           +       A     +    R+ G   P+  +     P       
Sbjct: 410 EVSVLGAQQARQSMPPESYTELLKAKPANGKPAYVRLTGLPAPVIVEVQAITPPEDIAA- 468

Query: 467 QIKESIPARDRKLEE 481
                +P   + L +
Sbjct: 469 ----QLPPAKQALAQ 479


>gi|32490901|ref|NP_871155.1| hypothetical protein WGLp152 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166107|dbj|BAC24298.1| ppiD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 628

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 100/608 (16%), Positives = 232/608 (38%), Gaps = 34/608 (5%)

Query: 28  WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
            GL    FS +  S ++ +  +K+ +  F  +        +      +N  +        
Sbjct: 30  TGLGTY-FSGNNESYIIKINNEKISYDKFQQNMMNFKINNNINDNLDINEHKLNFF--KN 86

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           ++L  ++    L Q+ + I L     ++   I     F+ +   F  +   S L+  G++
Sbjct: 87  QVLLKIIENTLLKQYAKKINLIITEEKIKKTIYEISEFNSEIG-FDLNKLKSLLSDIGLS 145

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
              +I      L   +++ +           ++     Y + R +     +      I  
Sbjct: 146 LDSFIKEIYDQLLINEIINIIDITSFLLPYEIENILLQYLQERHIKLATFDKTQEININS 205

Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK--EKKIEISNDELQAEYEKNKEKYF 265
            S++     ++     Y  P+   I+Y+  ++++   + KI   + E+Q  Y KN +K+ 
Sbjct: 206 VSDSEAEAEYKLNSHKYVTPKKFNINYLKININDIKNKDKIIAKSKEVQEWYLKNIKKFT 265

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIP 321
            PE +    + F ++KEA      +K  K F ++A+ + K +    ++  +G   +++I 
Sbjct: 266 LPEKKRYSIIQFDSEKEAIFYLNKIKNEKDFFEIAKNKSKDIFSSVNNGDIGWIQEDFII 325

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           +      I +L  K + + +I  S GY+I  ++ I P      +   K+I N ++  K+ 
Sbjct: 326 E---EIKIANLKNKNEISKIIKSSSGYLIIMLTEIIPKVEQDLKYFYKEIENYIKEEKSI 382

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
           +      ++++  LA          +    +  +    +    +  K +  I    ++  
Sbjct: 383 KIFNNYIEKIK-ILAKDNKYSFNDLKNDFRNYYINNTGW----IDEKNIINIFNSFEIDQ 437

Query: 442 RVFGKDDPLSKDHTVALP-----DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
                ++    +  + L      +  ++   I + +  +     EV   +KK     K  
Sbjct: 438 EKLNINNINKCNFNIKLDQFHIKNDEFLVFCINDFLDKKIISFSEVKDQIKKQVLHDKFI 497

Query: 497 EEVSSKANQLVLEY-SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
            +   K    ++E  SK   N  ++ K  G   L    ++  D+++          +F+ 
Sbjct: 498 LQSKIKLKNAIIELESKNSPNIEEVMKKFGLIFLEKKTLDLFDDKSDEKLKYL---IFNM 554

Query: 556 --PVEMVKCFPI----ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
             P    K + I    E  L  ++ K+T  ++  V  K+  I+ L    +K  +D+++  
Sbjct: 555 KEPNYKKKSYEIFIDNEKILLVILDKITQKRINSVD-KNILINQLKNKNSKLDIDALLNN 613

Query: 610 LKSQYSVT 617
           LK++  + 
Sbjct: 614 LKNKSKIK 621


>gi|213521163|gb|ACJ50520.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens]
          Length = 279

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 108/283 (38%), Gaps = 6/283 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59
           ML+ IR  S+ W+AK  + ++       G+      S +    V  V  +++  +    +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAIFQASGNNKQDVAKVNGEEITQTELSQA 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
              +   + Q++G   ++       L    L  L+    L Q   D         +   I
Sbjct: 61  VDMQRRQLMQQLGKDFDASLLDEKLLRDAALKGLIDRKLLLQGAADSKFGFSEAALDQVI 120

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            ++P F   D KF+ + F   + + G +  ++    T+ +    V     G    ++  +
Sbjct: 121 LQTPEFQ-VDGKFNAERFDQVVRQLGYSRLQFRQMLTQEMLIGQVRAGIAGSGFVTDAEV 179

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
               R   + R  D+  +N +  PA    ++  +  +++++   +  P+   I Y+    
Sbjct: 180 LAFARLEKQTR--DFATVNIKADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKK 237

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
                ++ + +DELQA YE  KE     E R    ++     +
Sbjct: 238 SSFFDQVTVKDDELQAAYE--KETANLAEQRRAAHILDEVNDK 278


>gi|330889992|gb|EGH22653.1| periplasmic folding chaperone [Pseudomonas syringae pv. mori str.
           301020]
          Length = 427

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 68/437 (15%), Positives = 158/437 (36%), Gaps = 37/437 (8%)

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                 ++  +   ++++   + +PE   + YI         K+++ +++LQA Y+K   
Sbjct: 4   TTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIA 63

Query: 263 KYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                E R    ++            + + +E  Q L KG+ F  LA+E  +     S G
Sbjct: 64  NLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKG 121

Query: 314 S---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
               ++ + + D +  D++++L K    +  +   FG+ +  +  ++     +F  +K  
Sbjct: 122 GDLGYAGKGVYDPAFEDTLYALNKD-QVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKDK 180

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           +   ++     +K  E  K+LE+     + + + ++   +           G +      
Sbjct: 181 LTTDLKSQLVEQKFVEVTKQLEDSAFESSDLSQPAQDLGLKVQTTAPFGREGGE------ 234

Query: 431 AAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
             I     ++   F  +  +  S  +T+ L   + + V+ KE +  +   LE V + ++ 
Sbjct: 235 -GITANRAVIQAAFSPEVLEEGSNSNTLELDPETVVVVRSKEHLQPQQLPLESVASSIRT 293

Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548
                       +K   L+    ++GK      K  G    +   + R     +      
Sbjct: 294 QLVKEHATAAAKAKGEALLAGL-RDGK-IPLAAKQDGRDWKSMEAVTRS---QEGVDPQV 348

Query: 549 ISQVFSGPVEMVKCFP------IENGLSYVV--FKVTNSKVGPVQEKDKFISYLTQMMNK 600
           +  +F  P    K  P        +G   +V    V  +      EK ++  +L     +
Sbjct: 349 LQTLFRMPKPDGKGKPEFASITAADGSFVIVRLNGVNQAAAPTDAEKAQYRRFLASRAGQ 408

Query: 601 DLLDSVIAYLKSQYSVT 617
               +  A L+S+  + 
Sbjct: 409 QDFAAYRAQLESKAKIE 425


>gi|255322620|ref|ZP_05363764.1| conserved hypothetical protein [Campylobacter showae RM3277]
 gi|255300181|gb|EET79454.1| conserved hypothetical protein [Campylobacter showae RM3277]
          Length = 487

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 90/409 (22%), Positives = 163/409 (39%), Gaps = 18/409 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  ++K  +  V  I++  +      F+ WG  D   + S +S+V  VG + +    F 
Sbjct: 1   MITWMQKHRKYLVVTIWVSTIAFVGAGFVGWGAYD--LNASRASSVAKVGHRNISIQEFQ 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           N + Q     SQ     ++ E A  +G++   L+ LV+ A L  F +D+GL  +   +  
Sbjct: 59  NRYGQLHAYYSQLFDGQLSDENASELGIENLALEALVNDAMLLNFADDLGLGVNDEDIVK 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     FH  + KF  +++ + L R    E EY +    ++    +           ++
Sbjct: 119 YIIADQNFHS-NGKFDKELYKNTLKRARTTESEYEESLKNVILLDKLRHALNLPANAQDI 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +  A     +  S+  +  N   +          L + +E++K+ Y+        + L 
Sbjct: 178 DMLTASFLMQDKISIKVVEANADEI----KIDEDALKKLWEEHKNEYKT----MTEFKLD 229

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                    + + +EL   Y +NK +Y   + +  E     ++   D   +  KK     
Sbjct: 230 TKFIPAISSDANTNELTEFYNENKNEYKGSDDKIKEFEAVKDEVLKDYNLKQTKKVALEE 289

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            L  ++ +  +D+S+ +F      + SL      LAKKGD         GY+I  V  I 
Sbjct: 290 YLKIKKDEKQADVSVSTFED----NASLPMDELKLAKKGDTLKPFEYEDGYMIVKVKEIV 345

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
               +SF E K+ I    +  K  E V+   K L E    GT +  +SR
Sbjct: 346 APRVMSFDEAKEQILELYKEQKTKEIVEAKAKELLEKGFQGTDIGFVSR 394



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 100/262 (38%), Gaps = 46/262 (17%)

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
               F+ VK ++     + +  +   E+Y +++             + EK   + +    
Sbjct: 262 KIKEFEAVKDEVLKDYNLKQTKKVALEEYLKIK-------------KDEKQADVSVSTF- 307

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
                   ++ A++P  E  L +      P          +  YM V++KE +  R    
Sbjct: 308 --------EDNASLPMDELKLAKKGDTLKPFEY-------EDGYMIVKVKEIVAPRVMSF 352

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           +E    + + +K  KT E V +KA +L+ +  +                ++ + +     
Sbjct: 353 DEAKEQILELYKEQKTKEIVEAKAKELLEKGFQG----------TDIGFVSRDTVKAEGG 402

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
            ++      ++++F       K + +  G   VV+++T  K+   +++ ++   +TQ + 
Sbjct: 403 LSEGEFNIFVNRLFE--KGGKKGYVVL-GDKAVVYEITEQKLTNSEKEKEYKEIITQNVG 459

Query: 600 ----KDLLDSVIAYLKSQYSVT 617
                +L+  + A L  +Y VT
Sbjct: 460 FLKNNELIRDLTAMLSKRYQVT 481


>gi|220916557|ref|YP_002491861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954411|gb|ACL64795.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 523

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 78/554 (14%), Positives = 176/554 (31%), Gaps = 61/554 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSD----ALFSVSGSSTVVSVGRQKVPFSS 55
           ML+I+R   +   + + ++ + V F I +G               +    V  + +  + 
Sbjct: 1   MLDIVRANKKGIFSWLIVLGIVVVFAINFGPGSLSKGGAGCGGAPAYAARVNGKSISAAD 60

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F   ++  L    Q+ G     E A  +GL ++ L  L       Q     G+      V
Sbjct: 61  FERQYENLLRFYQQQAGEGFTRELAAQLGLGRQALGVLEDRELALQEARRRGVVVTDREV 120

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              + + P F  ++ +F ++ ++  +     +   +       L    ++G  V  ++  
Sbjct: 121 SEAVHQMPAFQ-ENGQFRYETYLEAVRANYGSPGNFEAAVRDDLLYQKILGALVETVKVP 179

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
              +        +  S+ ++        A     +A    + +K                
Sbjct: 180 ATEVRAQWAASADRASLQFVRFPVAAAQAEVKVPDAEAKAFADK---------------- 223

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV------------FPNQKEA 283
                            ++A Y++N ++Y       V  ++               +K+ 
Sbjct: 224 -------------EGARVEAFYKENADRYDQRAKAHVRHVLARVAPGASADEEAAARKKI 270

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           DEA   +KKG+ F ++A       +       LG  S+          +     K G+ +
Sbjct: 271 DEAAARVKKGEDFAKVAAALSDDPNTKDRGGDLGFVSEGLADAAFAKAA--LALKAGEVS 328

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKRLEEFLALG 398
             +    G+ +     + P+  V+ +  + DIA + +   +A    +E  +   +    G
Sbjct: 329 EPVRTPAGWHLIRADEVVPARKVTLEAARLDIARELLARDRAQALAREKAQAALDAARKG 388

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKG-----KEVAAIPYKEQLLFRVFGKDDPLSKD 453
            ++DE+        + L     A ++          V  +    +L              
Sbjct: 389 KALDELFPPAGKGKVTLGGTALAAEETGPFGAGSPVVPRVGAAPELAQAALSAKAGEVLP 448

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
                P G  + V      P   R  E     ++   + +K  +   +   +L  + +K 
Sbjct: 449 KVFDTPSGPVIAVVKLRESPDPAR-FEAERAGIEARLQGMKAEQVRRAWLEELRGK-AKI 506

Query: 514 GKNFRDIGKNLGAS 527
            +N   +G    A+
Sbjct: 507 EENVALLGAAQPAA 520



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 90/269 (33%), Gaps = 21/269 (7%)

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           +  ++    ++++     K+++E  A     ++ ++    +S D    D  G        
Sbjct: 250 VLARVAPGASADEEAAARKKIDEAAARVKKGEDFAKVAAALSDDPNTKDRGGDL----GF 305

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
            +    +    +             V  P G +  ++  E +PAR   LE    D+ ++ 
Sbjct: 306 VSEGLADAAFAKAALALKAGEVSEPVRTPAG-WHLIRADEVVPARKVTLEAARLDIAREL 364

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG----- 545
                A+ ++ +  Q  L+ +++GK   ++    G   +T         E   FG     
Sbjct: 365 LARDRAQALAREKAQAALDAARKGKALDELFPPAGKGKVTLGGTALAAEETGPFGAGSPV 424

Query: 546 -------YDGISQVFSGPVEMV--KCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISYL 594
                   +      S     V  K F   +G    V K+  S        E+    + L
Sbjct: 425 VPRVGAAPELAQAALSAKAGEVLPKVFDTPSGPVIAVVKLRESPDPARFEAERAGIEARL 484

Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
             M  + +  + +  L+ +  +  +  L+
Sbjct: 485 QGMKAEQVRRAWLEELRGKAKIEENVALL 513


>gi|115378201|ref|ZP_01465373.1| peptidyl-prolyl cis-trans isomerse domain protein, putative
           [Stigmatella aurantiaca DW4/3-1]
 gi|115364789|gb|EAU63852.1| peptidyl-prolyl cis-trans isomerse domain protein, putative
           [Stigmatella aurantiaca DW4/3-1]
          Length = 589

 Score =  212 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 89/530 (16%), Positives = 185/530 (34%), Gaps = 71/530 (13%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSV----GRQKVPFSSF 56
           ++ +   +R  ++ + +V + V F + +G     F       V S       +++P   F
Sbjct: 68  MDGM--NARKVLSLVGIVAIAVVFTLQFGPGSTGFGSGRGPVVPSAVAVVNGKEIPLRDF 125

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              +  +L  +  + G  +    AR   L  +++D LV+   L Q  E  G+      + 
Sbjct: 126 SRVYAGQLNSLRNR-GVPIPESYARQ-SLPSQVMDQLVTRELLSQAAERHGINPSDDELR 183

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             I  +  FH KD +F+ + +   L       E +Y +   + L+   ++ +   G   S
Sbjct: 184 KLIHENADFH-KDGQFNFEQYKRALRDYYRTTEPKYEEELRRQLAAQKMLQVVNSGAVVS 242

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           +  +            V +         A    P+ A L ++ + +              
Sbjct: 243 DDEVRARYEKDANQAKVVFARFLPTMYAAQVPAPTPAQLEEFRKAH-------------- 288

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ 282
                          NDE+   YE N+  Y   E     Q++     +            
Sbjct: 289 ---------------NDEISTYYESNRFMYQQAERAKARQILVKLAPDAAAQQKAEAKSR 333

Query: 283 ADEAFQSL-KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           A+   + + + GK F  +A E+ +      S   LG   +  + + +LA+++F+LA  G 
Sbjct: 334 AEALHKEVTEGGKDFATVARERSEDPGTKASGGDLGWVERASL-EPTLAEAVFALAPNG- 391

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM-RITKASEKVKEDYKRLEEFLA 396
            +  I    G+ +  V   + +     +E   +IA  + +  KA E  K   ++    L 
Sbjct: 392 VSQPIETKLGWHVVKVEEKQAAQDKKLEEAAPEIATTLYKQQKAKELAKAAAEKALASLK 451

Query: 397 LGTSMDEI---------SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
            G ++ ++         + +          V+       G+ V  +     L    F   
Sbjct: 452 GGQTLQQLFPPEKEGQPALQRFETETRPEAVETGSFTAGGESVPYLGLAPALSTAAFSAP 511

Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
            P   D    L +G ++  Q+ E +   D    +   ++++  +  K  E
Sbjct: 512 GPQVLDQVFPLSEG-FVVAQVTERVKPSDETFTQKKDELREQTRRAKQIE 560



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 74/500 (14%), Positives = 154/500 (30%), Gaps = 76/500 (15%)

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            +  +   G+        Q+      ++ V   +L+        +PS+  L +   +  D
Sbjct: 132 QLNSLRNRGVPIPESYARQSLPSQVMDQLVTRELLSQAAERHGINPSDDELRKLIHENAD 191

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
            ++  ++    Y                  L+  Y   + KY     R +          
Sbjct: 192 FHKDGQFNFEQY---------------KRALRDYYRTTEPKYEEELRRQL---------A 227

Query: 283 ADEAFQSLKKGK--KFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLAD-SIFSLA 333
           A +  Q +  G      ++     K  +         L +     +P  + A    F  A
Sbjct: 228 AQKMLQVVNSGAVVSDDEVRARYEKDANQAKVVFARFLPTMYAAQVPAPTPAQLEEFRKA 287

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE- 392
              + +     +           +     +     + I  ++    A+++  E   R E 
Sbjct: 288 HNDEISTYYESN------RFMYQQAERAKA-----RQILVKLAPDAAAQQKAEAKSRAEA 336

Query: 393 ---EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
              E    G     ++R       + P    +G D+   E A++  +  L   VF    P
Sbjct: 337 LHKEVTEGGKDFATVARERS----EDPGTKASGGDLGWVERASL--EPTLAEAVFAL-AP 389

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
                 +    G +  V+++E   A+D+KLEE   ++       + A+E++  A +  L 
Sbjct: 390 NGVSQPIETKLG-WHVVKVEEKQAAQDKKLEEAAPEIATTLYKQQKAKELAKAAAEKALA 448

Query: 510 YSKEGKNFRDI---GKNLGASLLTTNQINRMDNENK-------------FFGYDGISQVF 553
             K G+  + +    K    +L       R +                        +  F
Sbjct: 449 SLKGGQTLQQLFPPEKEGQPALQRFETETRPEAVETGSFTAGGESVPYLGLAPALSTAAF 508

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAY 609
           S P   V          +VV +VT           Q+KD+      +    ++ +S +  
Sbjct: 509 SAPGPQVLDQVFPLSEGFVVAQVTERVKPSDETFTQKKDELREQTRRAKQIEMTESFLKA 568

Query: 610 LKSQYSVTVHDNLIQRYLDG 629
           L+   +V  ++  IQ  +  
Sbjct: 569 LRETGTVVENNEAIQTIVGA 588


>gi|261378747|ref|ZP_05983320.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria cinerea
           ATCC 14685]
 gi|269144903|gb|EEZ71321.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria cinerea
           ATCC 14685]
          Length = 512

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/494 (16%), Positives = 179/494 (36%), Gaps = 52/494 (10%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  GS  +V VG +K+   S   + + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGSDYIVQVGDEKISDHSINTAMQNE-----QAKGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             +            +  +L+  A L Q  + +G+     ++   I   P FH    KFS
Sbjct: 65  SPS---------RDAVFQSLLQRAYLKQGAKLMGISVSQEQIKQIIVDDPNFHDAGGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+  S+   +Q  +    NR++ 
Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVSDAQAEQLVKLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N          ++A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIGQVKAADADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  YE+   +  +      E+L F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAYEERMARLPAEG----EKLSFEKEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 ----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF----------------G 347
               +  + G   +     +S  D+  S   +   + +                      
Sbjct: 292 SLADAAKNSGLKVETQETWLSRQDAQMSGLPENVISAIFSDDVLKKKHNSEVLSINNETA 351

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           + +     ++   T+ F+E K  +      T+A +  +E  K +   L  G + D     
Sbjct: 352 W-VVRAKEVREEKTLPFEEAKDAVRQAYIRTEAVKLAEERAKEVLAQLNGGKAADVKWSE 410

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
             ++           +       A     +    R+ G   P+  +     P        
Sbjct: 411 VSVLGAQQARQSMPPESYTELLKAKPANGKPAYVRLTGLPAPVIVEVQAVTPPDD----- 465

Query: 468 IKESIPARDRKLEE 481
           I   +P+  + L +
Sbjct: 466 IANRLPSAKQALAQ 479



 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 18/156 (11%)

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-INR 536
             E+    V+ + K  K   + +    +L  +      +  D  KN G  + T    ++R
Sbjct: 254 SFEKEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPSSLADAAKNSGLKVETQETWLSR 313

Query: 537 MDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVV--FKVTNSKVGPVQEKDKF 590
            D +      + IS +FS  V   K       I N  ++VV   +V   K  P +E    
Sbjct: 314 QDAQMSGLPENVISAIFSDDVLKKKHNSEVLSINNETAWVVRAKEVREEKTLPFEEAKDA 373

Query: 591 ISY---------LTQMMNKDLLDSVIAYLKSQYSVT 617
           +           L +   K++L  +         V 
Sbjct: 374 VRQAYIRTEAVKLAEERAKEVLAQLNGG--KAADVK 407


>gi|197121763|ref|YP_002133714.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
 gi|196171612|gb|ACG72585.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
          Length = 524

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/555 (13%), Positives = 176/555 (31%), Gaps = 62/555 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSD----ALFSVSGSSTVVSVGRQKVPFSS 55
           ML+I+R   +   + + ++ + V F I +G               +    V  + +  + 
Sbjct: 1   MLDIVRANKKGIFSWLIVLGIVVVFAINFGPGSLSKGGAGCGGAPAYAARVNGKSISAAD 60

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F   ++  L    Q+ G     E A  +GL ++ L  L       Q     G+      V
Sbjct: 61  FERQYENLLRFYQQQAGEGFTRELAAQLGLGRQALGVLEDRELALQEARRRGVVVTDREV 120

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              + + P F  ++ +F ++ ++  +     +   +       L    ++G  V  ++  
Sbjct: 121 SEAVHQMPAFQ-ENGQFRYETYLEAVRANYGSPGNFEAAVRDDLLYQKILGALVETVKVP 179

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
              +        +  S+ ++        A     +A    + +K                
Sbjct: 180 ATEVRAQWAASADRASLQFVRFPVAAAQAEVKVPDADAKAFADK---------------- 223

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV------------FPNQKEA 283
                            ++A Y++N ++Y       V  ++               +K+ 
Sbjct: 224 -------------EGARVEAFYKENADRYDPKAKVHVRHVLARLAPGASADEEAAARKKI 270

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           DEA   +KKG+ F ++A       +       LG  S+          +     K G+ +
Sbjct: 271 DEAAARVKKGEDFAKVAAALSDDPNTKDRGGDLGFVSEGLADAAFAKAA--LALKAGEVS 328

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKRLEEFLALG 398
             +    G+ +     + P+  V+ +  + DIA + +   +A    +E  +   +    G
Sbjct: 329 EPVRTPAGWHLIRADEVVPARKVTLEAARLDIARELLARDRAQALAREKAQAALDAARKG 388

Query: 399 TSMDEI------SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
            ++DE+       ++  +    +   +          V  +    +L             
Sbjct: 389 KALDELFPPAGKGKQVTLGGTAVAAEETGPFGAGSPVVPRVGAAPELAQAALSAKAGEVL 448

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
                 P G  + V      P   R  E     ++   + +K  +   +   +L  + +K
Sbjct: 449 PKVFDTPSGPVIAVVKLRESPDPAR-FEAERAGIEARLQGMKAEQVRRAWLEELRGK-AK 506

Query: 513 EGKNFRDIGKNLGAS 527
             +N   +G    A+
Sbjct: 507 IEENVALLGAAQPAA 521



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 88/270 (32%), Gaps = 22/270 (8%)

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           +  ++    ++++     K+++E  A     ++ ++    +S D    D  G        
Sbjct: 250 VLARLAPGASADEEAAARKKIDEAAARVKKGEDFAKVAAALSDDPNTKDRGGDL----GF 305

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
            +    +    +             V  P G +  ++  E +PAR   LE    D+ ++ 
Sbjct: 306 VSEGLADAAFAKAALALKAGEVSEPVRTPAG-WHLIRADEVVPARKVTLEAARLDIAREL 364

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF------ 544
                A+ ++ +  Q  L+ +++GK   ++    G     T     +  E          
Sbjct: 365 LARDRAQALAREKAQAALDAARKGKALDELFPPAGKGKQVTLGGTAVAAEETGPFGAGSP 424

Query: 545 -------GYDGISQVFSGPVEMV--KCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISY 593
                    +      S     V  K F   +G    V K+  S        E+    + 
Sbjct: 425 VVPRVGAAPELAQAALSAKAGEVLPKVFDTPSGPVIAVVKLRESPDPARFEAERAGIEAR 484

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           L  M  + +  + +  L+ +  +  +  L+
Sbjct: 485 LQGMKAEQVRRAWLEELRGKAKIEENVALL 514


>gi|304387500|ref|ZP_07369689.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC
           13091]
 gi|304338387|gb|EFM04508.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC
           13091]
          Length = 512

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/479 (16%), Positives = 172/479 (35%), Gaps = 49/479 (10%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A+I L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E      + G 
Sbjct: 12  AQILLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAMQNE------QAGG 63

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
              S           +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 64  GSPS--------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIHDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  YE+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNVYEERVARLPANE----AKPSFEQEKAAIENELKMKKAVADFNKAKEKLGDDAFNHPA 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSSLKVETQETWLSRQDAQMSGLPENLINAIFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
            + +     ++   T+ F E K  +      T+A++  +   K +   L+ G ++D    
Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKEVLAQLSGGKAVDVKWS 409

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
              ++           +       A     +    R+ G   P+  +     P      
Sbjct: 410 EVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEVQAITPPDDIAA 468


>gi|261392500|emb|CAX50051.1| putative peptidyl-prolyl cis-trans isomerase D (PPIase D; rotamase
           D) [Neisseria meningitidis 8013]
          Length = 512

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 159/416 (38%), Gaps = 49/416 (11%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E      + G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAMQNE------QAGG 63

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
              S           +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 64  GSPS--------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            + +     ++   T+ F E K  +      T+A++  +   K +   L  G ++D
Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405


>gi|86158923|ref|YP_465708.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775434|gb|ABC82271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 524

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/534 (13%), Positives = 167/534 (31%), Gaps = 61/534 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSD----ALFSVSGSSTVVSVGRQKVPFSS 55
           ML+I+R   +  ++ + ++ + V F I +G               +    V  + +  + 
Sbjct: 1   MLDIVRANKKGILSWLIVLGIVVVFAINFGPGSLSKGGAGCGGAPAYAARVNGKSISAAD 60

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F   ++  L    Q+ G     E A  +GL ++ +  LV      Q     G+      V
Sbjct: 61  FERQYENLLRFYQQQAGEGFTRELAAQLGLGRQAMGVLVDRELALQEARRRGVVVTDREV 120

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              + + P F  ++ +F ++ ++  +     +   +       L    ++G  V  ++  
Sbjct: 121 SEAVHQMPAFQ-ENGQFRYETYLEAVRANYGSPGNFEAAVRDDLLYQKILGALVETVKVP 179

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
              +        +  ++ ++        A    S+A    + ++                
Sbjct: 180 ATEVRAQWAASADRAALKFVRFPISAAQAEVKVSDADAKAFADR---------------- 223

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV------------FPNQKEA 283
                            ++A Y++N ++Y       V  ++               +K+ 
Sbjct: 224 -------------EGARVEAFYKENADRYDQKAKVHVRHVLARVAPGASADEEAAARKKI 270

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           DEA   +KKG+ F ++A       +       LG  S+          +     K G  +
Sbjct: 271 DEAAARVKKGEDFAKVAAALSDDPNTKDRGGDLGFVSEGLADAAFAKAA--LALKAGQVS 328

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM-RITKASEKVKEDYKRLEEFLALG 398
             +    G+ +     + P+  V+ +  + DIA ++    +A    +E  +   +    G
Sbjct: 329 EPVRTPAGWHLIRAEEVVPARQVTLEAARLDIARELVARDRAQALAREKAQAALDAARKG 388

Query: 399 TSMDEI------SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
            ++DE        ++  +    L              V  I    +L             
Sbjct: 389 KALDEQFPPAGKGKQVTLGGTVLAAEQTGPFGAGSPVVPRIGAAPELAQAALTAKAGEVL 448

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                 P G  + V ++        + E     ++   + +K  +   +    L
Sbjct: 449 PKVFDTPSGPVVAV-VELRESPDPARFEAERAGIEARLQGMKAEQVRRAWLEDL 501



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 88/270 (32%), Gaps = 22/270 (8%)

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           +  ++    ++++     K+++E  A     ++ ++    +S D    D  G        
Sbjct: 250 VLARVAPGASADEEAAARKKIDEAAARVKKGEDFAKVAAALSDDPNTKDRGGDL----GF 305

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
            +    +    +             V  P G +  ++ +E +PAR   LE    D+ ++ 
Sbjct: 306 VSEGLADAAFAKAALALKAGQVSEPVRTPAG-WHLIRAEEVVPARQVTLEAARLDIAREL 364

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF------ 544
                A+ ++ +  Q  L+ +++GK   +     G     T     +  E          
Sbjct: 365 VARDRAQALAREKAQAALDAARKGKALDEQFPPAGKGKQVTLGGTVLAAEQTGPFGAGSP 424

Query: 545 -------GYDGISQVFSGPVEMV--KCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISY 593
                    +      +     V  K F   +G    V ++  S        E+    + 
Sbjct: 425 VVPRIGAAPELAQAALTAKAGEVLPKVFDTPSGPVVAVVELRESPDPARFEAERAGIEAR 484

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           L  M  + +  + +  L+ +  +  +  L+
Sbjct: 485 LQGMKAEQVRRAWLEDLRGKAKIEENVALL 514


>gi|325130315|gb|EGC53082.1| hypothetical protein NMBOX9930304_0938 [Neisseria meningitidis
           OX99.30304]
          Length = 512

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 159/416 (38%), Gaps = 49/416 (11%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAMQNE-----QADGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             +            +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 65  SPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPTNE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            + +     ++   T+ F E K  +      T+A++  +   K +   L  G ++D
Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405


>gi|226329062|ref|ZP_03804580.1| hypothetical protein PROPEN_02965 [Proteus penneri ATCC 35198]
 gi|225202248|gb|EEG84602.1| hypothetical protein PROPEN_02965 [Proteus penneri ATCC 35198]
          Length = 276

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 105/244 (43%), Gaps = 5/244 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ IR  +     KI L V+ + F++ G+   LFS SG +    V   K+  S    ++
Sbjct: 1   MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFS-SGVNDAAEVNGYKISRSQLEQAY 59

Query: 61  KQELGMISQKIGFVVNSERARSVG---LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +Q    + Q +G    +  +   G   + ++ LD L++ A LDQF + +G+ A   ++  
Sbjct: 60  QQRRAQLQQDMGENFAALASSEEGQKLIRQQALDLLINQALLDQFAQKLGISAGDQQIRD 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F   + KF +  +V  L    I+   + +   + L    +     G     + 
Sbjct: 120 AIFALPYFQ-TNGKFDNKKYVDLLKGNNIDADAFAEGIRQNLINQQLKFSIQGTDFALDS 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            + +      ++R+V    L+ +        S+  +  ++E+    + APE  +ISYI  
Sbjct: 179 EVKEFAGLMLQSRNVRLASLDIQPFLEKETASDEEVKAFYEQNNQMFIAPEQFKISYIQL 238

Query: 238 DVHE 241
           +  +
Sbjct: 239 NAQK 242


>gi|121634931|ref|YP_975176.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis FAM18]
 gi|120866637|emb|CAM10388.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis FAM18]
 gi|325132578|gb|EGC55271.1| hypothetical protein NMBM6190_0987 [Neisseria meningitidis M6190]
 gi|325138351|gb|EGC60920.1| hypothetical protein NMBES14902_1084 [Neisseria meningitidis
           ES14902]
 gi|325142491|gb|EGC64895.1| hypothetical protein NMB9615945_0995 [Neisseria meningitidis
           961-5945]
 gi|325198371|gb|ADY93827.1| conserved hypothetical protein [Neisseria meningitidis G2136]
          Length = 512

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 159/416 (38%), Gaps = 49/416 (11%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAMQNE-----QADGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             +            +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 65  SPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            + +     ++   T+ F E K  +      T+A++  +   K +   L  G ++D
Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405


>gi|240080666|ref|ZP_04725209.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           FA19]
 gi|268596788|ref|ZP_06130955.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268550576|gb|EEZ45595.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
          Length = 512

 Score =  209 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 83/494 (16%), Positives = 182/494 (36%), Gaps = 52/494 (10%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E        G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQNE----QADGGS 65

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                          +  +L+  A L Q  + +G+     ++   I   P FH  + KFS
Sbjct: 66  PW----------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPAHE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPDVSLADSIFS--LAKKGDFTPVIHGSFGY 348
                            + +S        +P+ +L +++FS  + KK   + V+  +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPE-NLINAVFSDDVLKKKHNSEVLTTNSET 350

Query: 349 V-IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
             +     ++    + F+E K  +      T+A++  +   K +   L  G ++D     
Sbjct: 351 AWVVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNGGKAVDVKWSE 410

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
             ++           +       A     +    R+ G   P+  +     P        
Sbjct: 411 VSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEVQAVTPPEDIAA-- 468

Query: 468 IKESIPARDRKLEE 481
               +P   + L +
Sbjct: 469 ---QLPPAKQALAQ 479


>gi|254805018|ref|YP_003083239.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
           alpha14]
 gi|254668560|emb|CBA06033.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
           alpha14]
 gi|319410487|emb|CBY90848.1| putative peptidyl-prolyl cis-trans isomerase D (PPIase D; rotamase
           D) [Neisseria meningitidis WUE 2594]
          Length = 512

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 86/518 (16%), Positives = 186/518 (35%), Gaps = 72/518 (13%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             +            +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 65  GPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
            + +     ++   T+ F E K  +      T+A++  +   K +   L  G ++D    
Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD---- 405

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
                 +    V   G     + +    Y E  L +    +   +    + LP  + + V
Sbjct: 406 ------VKWSEVSVLGAQQARQSMPPEAYAE--LLKAKPANGKPAYVRLIGLP--ASVIV 455

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
           +++   P           D+       K A      AN
Sbjct: 456 EVQAVTPP---------DDIAAQLPLAKQALAQQQSAN 484


>gi|325128356|gb|EGC51240.1| hypothetical protein NMXN1568_0938 [Neisseria meningitidis N1568]
          Length = 512

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 160/416 (38%), Gaps = 49/416 (11%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            ++            +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 65  GLS---------RDAVFQSLLQRAYLKQGSKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPTNE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            + +     ++   T+ F E K  +      T+A++  +   K +   L  G ++D
Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405


>gi|309378619|emb|CBX22797.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 512

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 159/429 (37%), Gaps = 51/429 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   I K      A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S   + 
Sbjct: 1   MFHSIEKYKT--PAQVLLGLIALTFVGFGVS--TVSHPGADYIVRVGDEKISEQSLNAAV 56

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E     Q  G   +            +  +L+  A L Q  + +G+     ++   I 
Sbjct: 57  QNE-----QADGGSPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH    KF H +    L++  ++E ++++      +  ++V +   G+   +   +
Sbjct: 103 DDPNFHDAGGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R    NR++     N     A    S A L +++   K +Y  P+  ++ Y+  ++ 
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQL 299
           +   K  +S  E++  YE+   +  + E     +  F  +K A E    +KK    F + 
Sbjct: 223 DFADKQTVSETEVKNAYEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKA 278

Query: 300 AEEQGKSL----------------------SDISLGSFSKEYIPD----VSLADSIFSLA 333
            E+ G                         + +S        +P+       +D +    
Sbjct: 279 KEKLGDDAFNHPSSLDEAAKNSGLKVETQETWLSRQDAQMSGLPENVINAVFSDDVLKKK 338

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
              +   + +    + +     ++   T+ F E K  +       +A++  +   K +  
Sbjct: 339 HNSEVLSINN-EIAW-VVRAKEVREEKTLPFAEAKDAVRQAYVRAEAAKLAENKAKEVLT 396

Query: 394 FLALGTSMD 402
            L  G ++D
Sbjct: 397 QLNGGKAVD 405


>gi|261401210|ref|ZP_05987335.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica
           ATCC 23970]
 gi|269208789|gb|EEZ75244.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica
           ATCC 23970]
          Length = 512

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 76/429 (17%), Positives = 161/429 (37%), Gaps = 51/429 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   I K      A++ L ++ + F+ +G+S A  S  G+  +V VG +K+   S   + 
Sbjct: 1   MFHSIEKYKT--PAQVLLGLIALTFVGFGVSTA--SRPGADYIVQVGDEKISEQSLNAAV 56

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E     Q  G   +            +  +L+  A L Q  + +G+     ++   I 
Sbjct: 57  QNE-----QADGGSPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH    KF H +    L++  ++E ++++      +  ++V +   G+   +   +
Sbjct: 103 DDPNFHDAGGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R    NR++     N     A    S A L +++   K +Y  P+  ++ Y+  ++ 
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQL 299
           +   K  +S  E++  YE+   +  + E     +  F  +K A E    +KK    F + 
Sbjct: 223 DFADKQAVSETEVKNAYEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKA 278

Query: 300 AEEQGKSL----------------------SDISLGSFSKEYIPD----VSLADSIFSLA 333
            E+ G                         + +S        +P+       +D +    
Sbjct: 279 KEKLGDDAFNHPSSLDEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKK 338

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
              +   + +    + +     ++   T+ F E K  +      T+A++  +   K +  
Sbjct: 339 HNSEVLTI-NSETAW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKEVLT 396

Query: 394 FLALGTSMD 402
            L  G ++D
Sbjct: 397 QLNGGKAVD 405


>gi|218768240|ref|YP_002342752.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis Z2491]
 gi|121052248|emb|CAM08573.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis Z2491]
 gi|254670088|emb|CBA04992.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
           alpha153]
 gi|325204222|gb|ADY99675.1| conserved hypothetical protein [Neisseria meningitidis M01-240355]
          Length = 512

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 159/416 (38%), Gaps = 49/416 (11%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             +            +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 65  GPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            + +     ++   T+ F E K  +      T+A++  +   K +   L  G ++D
Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405


>gi|325144618|gb|EGC66917.1| hypothetical protein NMBM01240013_1034 [Neisseria meningitidis
           M01-240013]
 gi|325205986|gb|ADZ01439.1| conserved hypothetical protein [Neisseria meningitidis M04-240196]
          Length = 512

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 158/416 (37%), Gaps = 49/416 (11%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S   + + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEQSLNAAVQNE-----QADGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             +            +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 65  SPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            + +     ++   T+ F E K  +      T+A++  +   K +   L  G ++D
Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405


>gi|254671966|emb|CBA04388.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
           alpha275]
          Length = 512

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 159/416 (38%), Gaps = 49/416 (11%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             +            +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 65  GPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVTDFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            + +     ++   T+ F E K  +      T+A++  +   K +   L  G ++D
Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405


>gi|15677110|ref|NP_274262.1| peptidyl-prolyl cis-trans isomerase-related protein [Neisseria
           meningitidis MC58]
 gi|7226478|gb|AAF41619.1| peptidyl-prolyl cis-trans isomerase-related protein [Neisseria
           meningitidis MC58]
 gi|316985097|gb|EFV64050.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis H44/76]
 gi|325140532|gb|EGC63053.1| hypothetical protein NMBCU385_0927 [Neisseria meningitidis CU385]
 gi|325200131|gb|ADY95586.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
          Length = 512

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 159/416 (38%), Gaps = 49/416 (11%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             +            +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 65  GPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            + +     ++   T+ F E K  +      T+A++  +   K +   L  G ++D
Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405


>gi|88608708|ref|YP_506523.1| rotamase family protein [Neorickettsia sennetsu str. Miyayama]
 gi|88600877|gb|ABD46345.1| rotamase family protein [Neorickettsia sennetsu str. Miyayama]
          Length = 594

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 105/600 (17%), Positives = 233/600 (38%), Gaps = 43/600 (7%)

Query: 32  DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
           +A  + S S  V SVGR+K+    F++ +K+          F +   + + +G+ + +L 
Sbjct: 34  NASITGSRSDVVASVGREKILVDDFVSEYKKHERYFQSMFDFRLTDTQLKDIGVGRIVLT 93

Query: 92  NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
            L+    ++Q  + +GL  D      +I ++P+F  ++ KF        L R  + E+EY
Sbjct: 94  TLIQDKVIEQLFKQMGLHIDTSIAIDKIKKNPVF-NENGKFDRAKLDDFLDRNDLTEREY 152

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
           I    + + +  V G F         L +    F +  + V    ++   +P    P+ +
Sbjct: 153 IRKVKREIGKDFVFGPFFNIQGEYGKLAELFYNFEYGLKEVSIAKVDKNALPTPPVPTES 212

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK-IEISNDELQAEYEKNKEKYFSPEIR 270
            L  ++E+ KD + + EY+  + IL      + + +E++++++Q  +E         +  
Sbjct: 213 ELVSFYEENKDKFFSDEYRAAACILISEDNVKPELVEVADEDVQKSFE----SLQLGKRY 268

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
            +  + F ++ EA+   +S+    +F         +  + S+ +    ++P     D   
Sbjct: 269 YINYVEFDSRDEAERMKRSISANPEFYA----NDLTRIEGSVKTDLPAFLPKNIQWDGNK 324

Query: 331 SLAKKGDFTPVIHGSF-GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
            L  K        G F  Y +  + ++ P       E K+   N++R      K+ +   
Sbjct: 325 WLLAK------YMGKFYIYTVVKIVSVSP-------EEKEKNLNELRKFMRLNKLNQIVD 371

Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
            + + + LG     I  +       L  +     D  GK+V      E+LL +VF   + 
Sbjct: 372 EIRDKVHLGEDWKVIVGKYGGEIDYLTPMSRLSLDKDGKKVK---VSEELLEQVFSSSEG 428

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
              +  V      ++  ++    P   +   +V + V +     +  +     A +L+ +
Sbjct: 429 AISE--VITGKNEFILFRVTSVEPVAKQPFSKVRSKVMEALSKKRQMQV----ALELLQK 482

Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
             + G+    +        L    I +    N  +  + I++VF            E+ +
Sbjct: 483 QQERGEKTEKVA-------LYRPGIAKRKGLNYHYPDEFIAEVFQIDSGGTTKV-FESDV 534

Query: 570 SYVVFKVTNSKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
            +   KV  ++   + +    +  + L + +   +L  +      Q+ V V+ +LI+  L
Sbjct: 535 EFFSGKVLGNRNPELDKSIVAEIEAKLREEIGFSMLSELTQAAMKQFKVKVNSDLIKDLL 594


>gi|161870081|ref|YP_001599251.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442]
 gi|161595634|gb|ABX73294.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442]
          Length = 512

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 158/416 (37%), Gaps = 49/416 (11%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S   + + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEQSLNAAVQNE-----QADGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             +            +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 65  SPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            + +     ++   T+ F E K  +      T+A++  +   K +   L  G ++D
Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405


>gi|325134515|gb|EGC57160.1| hypothetical protein NMBM13399_0963 [Neisseria meningitidis M13399]
          Length = 512

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 158/416 (37%), Gaps = 49/416 (11%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             +            +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 65  GPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +    +   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNSVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            + +     ++   T+ F E K  +      T+A++  +   K +   L  G ++D
Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405


>gi|194098675|ref|YP_002001737.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           NCCP11945]
 gi|240016542|ref|ZP_04723082.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           FA6140]
 gi|240112969|ref|ZP_04727459.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           MS11]
 gi|240118019|ref|ZP_04732081.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           PID1]
 gi|240123573|ref|ZP_04736529.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           PID332]
 gi|240125755|ref|ZP_04738641.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240128277|ref|ZP_04740938.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|260440465|ref|ZP_05794281.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           DGI2]
 gi|268599050|ref|ZP_06133217.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11]
 gi|268603732|ref|ZP_06137899.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1]
 gi|268682203|ref|ZP_06149065.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332]
 gi|268684354|ref|ZP_06151216.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686675|ref|ZP_06153537.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043765|ref|ZP_06569481.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|193933965|gb|ACF29789.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           NCCP11945]
 gi|268583181|gb|EEZ47857.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11]
 gi|268587863|gb|EEZ52539.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1]
 gi|268622487|gb|EEZ54887.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332]
 gi|268624638|gb|EEZ57038.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268626959|gb|EEZ59359.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012228|gb|EFE04217.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 512

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/495 (15%), Positives = 175/495 (35%), Gaps = 54/495 (10%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E        G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQNE----QADGGS 65

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                          +  +L+  A L Q  + +G+     ++   I   P FH  + KFS
Sbjct: 66  PW----------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPAHE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
            + +     ++    + F+E K  +      T+A++  +   K +   L  G ++D    
Sbjct: 351 AW-VVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNGGKAVDVKWS 409

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
              ++           +       A     +    R+ G   P+  +     P       
Sbjct: 410 EVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEVQAVTPPEDIAA- 468

Query: 467 QIKESIPARDRKLEE 481
                +P   + L +
Sbjct: 469 ----QLPPAKQALAQ 479


>gi|239998983|ref|ZP_04718907.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           35/02]
 gi|268594831|ref|ZP_06128998.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268548220|gb|EEZ43638.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|317164277|gb|ADV07818.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 512

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/495 (15%), Positives = 175/495 (35%), Gaps = 54/495 (10%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E        G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQNE----QADGGS 65

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                          +  +L+  A L Q  + +G+     ++   I   P FH  + KFS
Sbjct: 66  PW----------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPAHE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
            + +     ++    + F+E K  +      T+A++  +   K +   L  G ++D    
Sbjct: 351 AW-VVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNGGKAVDVKWS 409

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
              ++           +       A     +    R+ G   P+  +     P       
Sbjct: 410 EVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEVQAVTPPEDIAA- 468

Query: 467 QIKESIPARDRKLEE 481
                +P   + L +
Sbjct: 469 ----QLPPAKQALAQ 479


>gi|325202068|gb|ADY97522.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
          Length = 512

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 158/416 (37%), Gaps = 49/416 (11%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             +            +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 65  GPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +L F  +K A E    +KK    F +  E+          
Sbjct: 236 KNAFEERVARLPANE----AKLSFEQEKAAVENELKMKKAVADFNKAKEKLSDDAFNHPA 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSSLKVETQETWLSRQDAQMSGLPENLINAIFSDDVLKKKHNSEVLSINN-EI 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            + +     ++   T+ F E K  +       +A++  +   K +   L  G ++D
Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRAEAAKLAENKAKDVLTQLNGGKAVD 405


>gi|254796993|ref|YP_003081830.1| Rotamase family protein [Neorickettsia risticii str. Illinois]
 gi|254590229|gb|ACT69591.1| Rotamase family protein [Neorickettsia risticii str. Illinois]
          Length = 594

 Score =  207 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 108/601 (17%), Positives = 232/601 (38%), Gaps = 45/601 (7%)

Query: 32  DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
           +A    S S  V SVGR+K+    F++ +K+         GF +   + + +G+ + +L 
Sbjct: 34  NASIMGSRSDVVASVGREKILVDDFVSEYKKHERYFQSMFGFGLTDTQLKDIGVGRIVLT 93

Query: 92  NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
            L+    ++Q  + +GL  D      +I ++P F  ++ KF        L R  + E+EY
Sbjct: 94  TLIQDKVIEQLFKQMGLHIDTSIAIDKIKKNPAF-NENGKFDRAKLDDFLDRNDLTEREY 152

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
           I      + +  V G F         L +    F +  R V    +N   +P +  P+ +
Sbjct: 153 IRKVKCEIGKDFVFGPFFNIQGEYVKLAELFYNFEYGLREVSITKVNKNALPILPVPTES 212

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK-IEISNDELQAEYEKNKEKYFSPEIR 270
            L  ++E+ KD + + EY+   YIL      + + +EI+++++Q  +E         +  
Sbjct: 213 ELVSFYEENKDKFFSDEYRTAEYILISEDNVKPELVEIADEDVQKSFEN----LQLGKRY 268

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--S 328
            +  + F ++ EA+   +S+    +F         +  + S+ +    ++P     D   
Sbjct: 269 YINYVEFDSRDEAERMKKSISANPEFYA----NDLTRIEGSVKTDLPAFLPKNIQWDGNK 324

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
            F     G F       + Y +  + ++ P       E K+   N++R      K+ +  
Sbjct: 325 WFLAKYMGKF-------YVYTVVKIVSVSP-------EEKEKNLNELRKFMRLNKLNQIV 370

Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
             +   +  G     I  +       L  V     D +G++V      E+LL +VF   +
Sbjct: 371 DEIRSEVHSGEDWKAIVGKYGGEIDYLVPVCRLSLDKEGRKVK---VSEELLEQVFSIGE 427

Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
               +         ++  ++    P   +   +V + V K     +  +     A +L+ 
Sbjct: 428 GAIGETI--TTKNEFILFRVTSIEPVAKQPFNKVRSKVIKALSKKRQMQV----AFELLQ 481

Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
           +  + G+N   +        L   +I +    +  +  + I++VF            E+ 
Sbjct: 482 KQQENGENTEKVA-------LYRPEIAKRKGLSYHYPDEFIAEVFQIDSGGTTKV-FESD 533

Query: 569 LSYVVFKVTNSKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
           + +   KV  ++   + E    +  + L + +   +L  +      Q+ V V+ +L++  
Sbjct: 534 VEFFSGKVLGNRNPELDESIVAEIEAKLREEIGFSMLSELTQAAMKQFKVKVNSDLVKDL 593

Query: 627 L 627
           L
Sbjct: 594 L 594


>gi|59801181|ref|YP_207893.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           FA 1090]
 gi|240115723|ref|ZP_04729785.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           PID18]
 gi|268601403|ref|ZP_06135570.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
 gi|59718076|gb|AAW89481.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           FA 1090]
 gi|268585534|gb|EEZ50210.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
          Length = 512

 Score =  207 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 78/495 (15%), Positives = 175/495 (35%), Gaps = 54/495 (10%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E        G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQNE----QADGGS 65

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                          +  +L+  A L Q  + +G+     ++   I   P FH  + KFS
Sbjct: 66  PW----------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPAHE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
            + +     ++    + F+E K  +      T+A++  +   K +   L  G ++D    
Sbjct: 351 AW-VVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNGGKAVDVKWS 409

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
              ++           +       A     +    R+ G   P+  +     P       
Sbjct: 410 EVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEAQAVTPPEDIAA- 468

Query: 467 QIKESIPARDRKLEE 481
                +P   + L +
Sbjct: 469 ----QLPPAKQALAQ 479


>gi|308389331|gb|ADO31651.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis alpha710]
 gi|325136276|gb|EGC58884.1| hypothetical protein NMBM0579_1013 [Neisseria meningitidis M0579]
 gi|325208178|gb|ADZ03630.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
          Length = 512

 Score =  207 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 158/416 (37%), Gaps = 49/416 (11%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E     Q  G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             +            +  +L+  A L Q  + +G+     ++   I   P FH  + KF 
Sbjct: 65  GPS---------RDAVFQSLLQRAYLKQGAKLLGISVSSEQIKQIIVDDPNFHDANGKFD 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +L F  +K A E    +KK    F +  E+          
Sbjct: 236 KNAFEERVARLPANE----AKLSFEQEKAAVENELKMKKAVADFNKAKEKLSDDAFNHPA 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSSLKVETQETWLSRQDAQMSGLPENLINAIFSDDVLKKKHNSEVLSINN-EI 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            + +     ++   T+ F E K  +       +A++  +   K +   L  G ++D
Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRAEAAKLAENKAKDVLTQLNGGKAVD 405


>gi|293399048|ref|ZP_06643213.1| peptidyl-prolyl cis-trans isomerase D [Neisseria gonorrhoeae F62]
 gi|291610462|gb|EFF39572.1| peptidyl-prolyl cis-trans isomerase D [Neisseria gonorrhoeae F62]
          Length = 512

 Score =  207 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 79/495 (15%), Positives = 176/495 (35%), Gaps = 54/495 (10%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E        G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQNE----QADGGS 65

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                          +  +L+  A L Q  + +G+     ++   IA  P FH  + KFS
Sbjct: 66  PW----------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIADDPNFHDANGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPAHE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
            + +     ++    + F+E K  +      T+A++  +   K +   L  G ++D    
Sbjct: 351 AW-VVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNGGKAVDVKWS 409

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
              ++           +       A     +    R+ G   P+  +     P       
Sbjct: 410 EVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEAQAVTPPEDIAA- 468

Query: 467 QIKESIPARDRKLEE 481
                +P   + L +
Sbjct: 469 ----QLPPAKQALAQ 479


>gi|313668353|ref|YP_004048637.1| peptidyl-prolyl cis-trans isomerase [Neisseria lactamica ST-640]
 gi|313005815|emb|CBN87269.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica
           020-06]
          Length = 512

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 159/425 (37%), Gaps = 43/425 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M   I K      A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S   + 
Sbjct: 1   MFHSIEKYKT--PAQVLLGLIALTFVGFGVS--TVSRPGADYIVRVGDEKISEQSLNAAI 56

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + E     Q  G   +            +  +L+  A L Q  + +G+     ++   I 
Sbjct: 57  QNE-----QADGGSPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P FH    KF H +    L++  ++E ++++      +  ++V +   G+   +   +
Sbjct: 103 DDPNFHDAGGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R    NR++     N     A    S A L +++   K +Y  P+  ++ Y+  ++ 
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIR---TVEQLVFPNQKEADEAFQSLKKGK--- 294
           +   K  +S  E++  +E+   +  + E +     E+    N+ +  +A     K K   
Sbjct: 223 DFADKQAVSETEVKNAFEERVARLPANEAKPSFEQEKASVENELKMKKAVADFNKAKEKL 282

Query: 295 ---------KFIQLAEEQGKSLS----DISLGSFSKEYIPD----VSLADSIFSLAKKGD 337
                       + A+  G  +      +S        +P+       +D +       +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
              + +    + +     ++    + F E K  +      T+A++  +   K +   L  
Sbjct: 343 VLTI-NSETAW-VVRAKEVREEKNLPFAEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNG 400

Query: 398 GTSMD 402
           G ++D
Sbjct: 401 GKAVD 405


>gi|240014107|ref|ZP_04721020.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           DGI18]
 gi|240121669|ref|ZP_04734631.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           PID24-1]
 gi|254493775|ref|ZP_05106946.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291]
 gi|226512815|gb|EEH62160.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291]
          Length = 512

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/495 (15%), Positives = 175/495 (35%), Gaps = 54/495 (10%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A++ L ++ + F+ +G+S    S  G+  +V VG +K+   S  N+ + E        G 
Sbjct: 12  AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQNE----QADGGS 65

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                          +  +L+  A L Q  + +G+     ++   I   P FH  + KFS
Sbjct: 66  PW----------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           H +    L++  ++E ++++      +  ++V +   G+   +   +Q  R    NR++ 
Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               N     A    S A L +++   K +Y  P+  ++ Y+  ++ +   K  +S  E+
Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307
           +  +E+   +  + E     +  F  +K A E    +KK    F +  E+ G        
Sbjct: 236 KNAFEERVARLPAHE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291

Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346
                            + +S        +P+       +D +       +   + +   
Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
            + +     ++    + F+E K  +      T+A++  +   K +   L  G ++D    
Sbjct: 351 AW-VVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNRGKAVDVKWS 409

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
              ++           +       A     +    R+ G   P+  +     P       
Sbjct: 410 EVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEAQAVTPPEDIAA- 468

Query: 467 QIKESIPARDRKLEE 481
                +P   + L +
Sbjct: 469 ----QLPPAKQALAQ 479


>gi|223040376|ref|ZP_03610651.1| WbnF [Campylobacter rectus RM3267]
 gi|222878334|gb|EEF13440.1| WbnF [Campylobacter rectus RM3267]
          Length = 487

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 87/409 (21%), Positives = 159/409 (38%), Gaps = 18/409 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  ++K  +  V  I++  +      F+ WG  D   +VS +S+V  VG + +    F 
Sbjct: 1   MITWMQKHRKYLVVTIWVSTIAFVGAGFVGWGAYD--LNVSRASSVAKVGHRNISIQEFQ 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           N + Q     +Q     ++ ++A  +G++   L+ LV+ A L  F +D+GL  +   +  
Sbjct: 59  NRYGQLHAYYNQLFDGQLSEKKASELGIENLALEELVNDALLLNFADDLGLGVNDEDIVK 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     F   + KF  +++ + L R  I E EY D    ++    +        +  ++
Sbjct: 119 YIVADQNF-YVNGKFDKELYKNTLKRARITESEYEDSLKNVILLDKLRHALNLPAKEQDI 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +  A     +  S+  +                 + + +E+ K++Y+     ++     
Sbjct: 178 NMLTASFLMQDKISMQVV----EAATDEIKIDEDAVKKLWEERKNDYKTMTEFKLDTKFI 233

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                +        EL   Y +NK +Y   + +  E     ++   D   +  KK     
Sbjct: 234 PTISSDANTT----ELMEFYNENKNEYKGSDDKIKEFEAVKDEVLKDYNLKQTKKVALEE 289

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            L  ++ +  +DIS+ +       + SL       AKKGD         GY+I  V  I 
Sbjct: 290 YLKIKKDEKQADISITTLED----NASLPIDELKSAKKGDTLKPFEYEDGYMIVKVKEIV 345

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
               +SF E K  I    +  K  E V+   K L E    GT +  ISR
Sbjct: 346 APRVMSFDEAKDQILELYKEQKTQETVEAKAKELLEKGFQGTDIGFISR 394



 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 95/265 (35%), Gaps = 52/265 (19%)

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRREKIVSIDLPLV 418
               F+ VK ++     + +  +   E+Y +++ +      S+  +     +   +L   
Sbjct: 262 KIKEFEAVKDEVLKDYNLKQTKKVALEEYLKIKKDEKQADISITTLEDNASLPIDELKSA 321

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
                  KG  +    Y                        +  YM V++KE +  R   
Sbjct: 322 K------KGDTLKPFEY------------------------EDGYMIVKVKEIVAPRVMS 351

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
            +E    + + +K  KT E V +KA +L+ +  +                ++ + +    
Sbjct: 352 FDEAKDQILELYKEQKTQETVEAKAKELLEKGFQG----------TDIGFISRDTVKAES 401

Query: 539 NENKFFGYDGISQVF--SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596
             ++      ++++F  SG  + V       G   VV+++T  K+   +++ ++   +TQ
Sbjct: 402 GLSEGEFNIFVNRLFEKSGKKDYVSL-----GNKAVVYEITEQKLSNSEKEKEYKEIITQ 456

Query: 597 MMN----KDLLDSVIAYLKSQYSVT 617
            +      +L+  +   L  +Y V 
Sbjct: 457 NVGYLKNNELIRDLSGALSKRYKVE 481


>gi|34556675|ref|NP_906490.1| hypothetical protein WS0233 [Wolinella succinogenes DSM 1740]
 gi|34482389|emb|CAE09390.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 485

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 154/398 (38%), Gaps = 26/398 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  ++K  R  V  I++ V+      F+ WG   A    S SS V  VG  K+  +   
Sbjct: 1   MINWMQKHKRYLVITIWISVIAFVGAGFVGWG---AYSFSSSSSWVAKVGETKITQTELE 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + +     ++ +G  ++ E+A+++G++K+ LD+L+S   +  F +D+GL      V  
Sbjct: 58  QEYARLYEFYNKIVGGSLDKEQAKALGIEKQALDSLISKTLMLNFAKDVGLRVSDEEVAK 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            + +   FH  + KF    +   L         +       L    +  +    +     
Sbjct: 118 AVVKMEAFH-VEGKFDDKTYRKVLEENHYKPAAFERALHDSLLLEKLGVILTPSVTELEK 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
               A  +  +  S+  +             S+  +  ++ + +D Y       I Y L 
Sbjct: 177 ESLGAAFYIQDKLSIKTL----SSTSLKPVVSDEEVKSFWGENQDVYMTDRVYDIIYSL- 231

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--QKEADEAFQSLKKGKK 295
               K  +I  S++EL+  Y+  K  Y   + R +E  +     +K+  +A       K 
Sbjct: 232 ---SKNDEISASDEELKIHYDSFKNNYLGLDGRPLEFELARTRVEKDYKDAQAEKNALKT 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI---FSLAKKGDFTPVIHGSFGYVIAH 352
           +I+  +      +  SL         D +L D +    S AK G+    +    GY+   
Sbjct: 289 YIEFKKSPTPEGTRYSLAE------SDETLGDELLYRLSEAKVGETLKPVPSPEGYLTIK 342

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +  IK S  + F+  K+   N +   K  + ++E  K+
Sbjct: 343 LMGIKESEPMKFEAAKELARNDLLAQKKRDLLEEMAKK 380


>gi|46204905|ref|ZP_00049316.2| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 294

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 129/297 (43%), Gaps = 10/297 (3%)

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLAL 397
           +  + G FG V+  V+ I+P     F EVK +I  ++ + +  E +  +    +E+  A 
Sbjct: 2   SEPVKGRFGTVLLRVTGIEPGDIKPFDEVKDEIRKEVALRRVREGEFDKAQDAIEDARAS 61

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
              + EI++   +  + +P VD  G D  GK V  IP KE  L   F  D   +    + 
Sbjct: 62  AKPLAEIAKDRGLTLLGIPAVDAQGNDPSGKPVEGIPDKETTLPAAFRADVG-NDTEALR 120

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
              G  +W  + +  P+ ++ L EV  +  K W   + A+ + +K+ +L     K G+  
Sbjct: 121 TKTGGTIWYDVVKIDPSHEKPLSEVRDEAVKGWTQAEVAKRLVAKSKELTERLEK-GEAI 179

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
             + +  G  L     + R   ++   G D + ++F+ PV      P  +G    VFKVT
Sbjct: 180 EAVAQETGLPLKQVADLGRNQTKDDLSG-DIVERIFTTPVGKAASAP--SGEGRAVFKVT 236

Query: 578 NSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
            + V           + ++ L   +  D+L   IA ++    V V+   ++R L GE
Sbjct: 237 AATVPAFVAGTPSDRQLVTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRALGGE 293



 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 86/262 (32%), Gaps = 34/262 (12%)

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK--------SLSDISLGSFSKEYIPDVSLA-DSIF 330
            K  D    +    K   ++A+++G                     E IPD      + F
Sbjct: 49  DKAQDAIEDARASAKPLAEIAKDRGLTLLGIPAVDAQGNDPSGKPVEGIPDKETTLPAAF 108

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
                 D   +   + G +   V  I PS      EV+ +        + ++++    K 
Sbjct: 109 RADVGNDTEALRTKTGGTIWYDVVKIDPSHEKPLSEVRDEAVKGWTQAEVAKRLVAKSKE 168

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
           L E L  G +++ +++   +    L  V   G++    +++       ++ R+F    P+
Sbjct: 169 LTERLEKGEAIEAVAQETGLP---LKQVADLGRNQTKDDLSG-----DIVERIFTT--PV 218

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
            K  +    +G  ++    +   A           V       +    + +     VL  
Sbjct: 219 GKAASAPSGEGRAVF----KVTAATVPAF------VAGTPSDRQLVTSLRTALADDVL-- 266

Query: 511 SKEGKNFRDIGKNLGASLLTTN 532
              G+   ++ K+ G ++  T 
Sbjct: 267 ---GEFIAEVQKSAGVNVNQTA 285


>gi|310820639|ref|YP_003952997.1| peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1]
 gi|309393711|gb|ADO71170.1| Peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1]
          Length = 519

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 89/524 (16%), Positives = 182/524 (34%), Gaps = 69/524 (13%)

Query: 8   ASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSV----GRQKVPFSSFINSWKQ 62
            +R  ++ + +V + V F + +G     F       V S       +++P   F   +  
Sbjct: 2   NARKVLSLVGIVAIAVVFTLQFGPGSTGFGSGRGPVVPSAVAVVNGKEIPLRDFSRVYAG 61

Query: 63  ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
           +L  +  + G  +    AR   L  +++D LV+   L Q  E  G+      +   I  +
Sbjct: 62  QLNSLRNR-GVPIPESYARQ-SLPSQVMDQLVTRELLSQAAERHGINPSDDELRKLIHEN 119

Query: 123 PLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
             FH KD +F+ + +   L       E +Y +   + L+   ++ +   G   S+  +  
Sbjct: 120 ADFH-KDGQFNFEQYKRALRDYYRTTEPKYEEELRRQLAAQKMLQVVNSGAVVSDDEVRA 178

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                     V +         A    P+ A L ++ + +                    
Sbjct: 179 RYEKDANQAKVVFARFLPTMYAAQVPAPTPAQLEEFRKAH-------------------- 218

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAFQ 288
                    NDE+   YE N+  Y   E     Q++     +            A+   +
Sbjct: 219 ---------NDEISTYYESNRFMYQQAERAKARQILVKLAPDAAAQQKAEAKSRAEALHK 269

Query: 289 SL-KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + + GK F  +A E+ +      S   LG   +  + + +LA+++F+LA  G  +  I 
Sbjct: 270 EVTEGGKDFATVARERSEDPGTKASGGDLGWVERASL-EPTLAEAVFALAPNG-VSQPIE 327

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM-RITKASEKVKEDYKRLEEFLALGTSMD 402
              G+ +  V   + +     +E   +IA  + +  KA E  K   ++    L  G ++ 
Sbjct: 328 TKLGWHVVKVEEKQAAQDKKLEEAAPEIATTLYKQQKAKELAKAAAEKALASLKGGQTLQ 387

Query: 403 EI---------SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
           ++         + +          V+       G+ V  +     L    F    P   D
Sbjct: 388 QLFPPEKEGQPALQRFETETRPEAVETGSFTAGGESVPYLGLAPALSTAAFSAPGPQVLD 447

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
               L +G ++  Q+ E +   D    +   ++++  +  K  E
Sbjct: 448 QVFPLSEG-FVVAQVTERVKPSDETFTQKKDELREQTRRAKQIE 490



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 73/500 (14%), Positives = 152/500 (30%), Gaps = 76/500 (15%)

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            +  +   G+        Q+      ++ V   +L+        +PS+  L +   +  D
Sbjct: 62  QLNSLRNRGVPIPESYARQSLPSQVMDQLVTRELLSQAAERHGINPSDDELRKLIHENAD 121

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
            ++  ++    Y                  L+  Y   + KY     R +          
Sbjct: 122 FHKDGQFNFEQY---------------KRALRDYYRTTEPKYEEELRRQL---------A 157

Query: 283 ADEAFQSLKKGK--KFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLAD-SIFSLA 333
           A +  Q +  G      ++     K  +         L +     +P  + A    F  A
Sbjct: 158 AQKMLQVVNSGAVVSDDEVRARYEKDANQAKVVFARFLPTMYAAQVPAPTPAQLEEFRKA 217

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE- 392
              + +     +           +     +     + I  ++    A+++  E   R E 
Sbjct: 218 HNDEISTYYESN------RFMYQQAERAKA-----RQILVKLAPDAAAQQKAEAKSRAEA 266

Query: 393 ---EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
              E    G     ++R       + P    +G D+   E A++   E  L        P
Sbjct: 267 LHKEVTEGGKDFATVARERS----EDPGTKASGGDLGWVERASL---EPTLAEAVFALAP 319

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
                 +    G +  V+++E   A+D+KLEE   ++       + A+E++  A +  L 
Sbjct: 320 NGVSQPIETKLG-WHVVKVEEKQAAQDKKLEEAAPEIATTLYKQQKAKELAKAAAEKALA 378

Query: 510 YSKEGKNFRDI---GKNLGASLLTTNQINRMDNENK-------------FFGYDGISQVF 553
             K G+  + +    K    +L       R +                        +  F
Sbjct: 379 SLKGGQTLQQLFPPEKEGQPALQRFETETRPEAVETGSFTAGGESVPYLGLAPALSTAAF 438

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAY 609
           S P   V          +VV +VT           Q+KD+      +    ++ +S +  
Sbjct: 439 SAPGPQVLDQVFPLSEGFVVAQVTERVKPSDETFTQKKDELREQTRRAKQIEMTESFLKA 498

Query: 610 LKSQYSVTVHDNLIQRYLDG 629
           L+   +V  ++  IQ  +  
Sbjct: 499 LRETGTVVENNEAIQTIVGA 518


>gi|157737622|ref|YP_001490305.1| hypothetical protein Abu_1381 [Arcobacter butzleri RM4018]
 gi|157699476|gb|ABV67636.1| conserved hypothetical membrane protein [Arcobacter butzleri
           RM4018]
          Length = 485

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 166/426 (38%), Gaps = 21/426 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  +++  +  V  I++  +      F+ WG  D          V  +G ++V    + 
Sbjct: 1   MITWMQRHKKWLVITIWISTIAFVGAGFVGWGSYDYGKQGG---VVAKIGDREVTVEEYQ 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             +       S+  G + N++ A  +GL     + ++       + + +GL+     +  
Sbjct: 58  QEYSNLYSQYSRMFGDMFNNQIAEQLGLKDIAYNQVLQKNLFMAYGDSLGLDVTDEEIAR 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           E+ +   F  KD KF  D ++  L +  +  K + +   + L    V  +F   + P++ 
Sbjct: 118 ELLKYEAF-FKDGKFDKDTYLKVLNQNRLTPKHFEESLKRTLLLQKVQSLFE--VNPTSW 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +  F    +   +L++  V          L +++E  K++Y +     ++Y L 
Sbjct: 175 EVENISKLLFLEDDITIKILSSNDV--KVTVDEEGLKKYWEDNKNSYMS----EVTYDLE 228

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPE--IRTVEQLVFPNQKEADEAFQSLKKGKK 295
                      +  E++ +YEK K  Y   +  I+++E+     + + D+ F   +  K 
Sbjct: 229 IKEIPFINSNSTEAEIKEQYEKFKIDYKHEDGKIKSLEEATPQIKTDLDDKFTKTEALKI 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +++L +++ K    ++     +  +P      +     K G+       +  Y+I  V  
Sbjct: 289 YLKLKKDEEKFDKTLN---ILESKLPYSQENIAKIKEVKNGEVVKPFMENGKYIIVKVVK 345

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           + PS  + F++ K            ++K++E   + E     GT +  ++R  KI  +  
Sbjct: 346 LNPSKVLDFEQAKAKATQDYEKVLRAQKLQEQA-KAELKDFKGTDIAGVTRTSKIAGLSQ 404

Query: 416 PLVDFA 421
                 
Sbjct: 405 EESTNF 410


>gi|154175271|ref|YP_001408420.1| WbnF [Campylobacter curvus 525.92]
 gi|112802934|gb|EAU00278.1| WbnF [Campylobacter curvus 525.92]
          Length = 485

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 156/399 (39%), Gaps = 28/399 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  +++  +  V  I++ V+      F+ WG  D   + + +++V +VG + +    F 
Sbjct: 1   MITWMQRNKKYLVVTIWISVIAFVGAGFVGWGAYD--LNNNKATSVATVGHRSISVQEFQ 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + Q     +      +  E+A  +G++ +    ++    L  F +DIGL      +  
Sbjct: 59  QKYNQIYEYHNNISDGKLTQEKADELGIENEAFQAVLQENLLLNFADDIGLSVSDDDILK 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I     F   D  FS +++   L R  IN  +Y  +    +    +           ++
Sbjct: 119 YIIADKNFQN-DGVFSKNLYYDVLRRARINPNDYEKNLKTAILLDKLYYALNLPATKKDV 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +  A  F  +  S++ I  N   +      +   + + +E  K+NY      +  Y++ 
Sbjct: 178 EMMMASLFMQDKLSIEMIEANENEIKF----NEDEIKELWESNKNNYMT----KTLYVID 229

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
            ++ + KK +I+   L A Y +NKEKY + + + +           DE  + + K     
Sbjct: 230 TLYIESKKDDINQTALSAYYNENKEKYKNSDDKIMPF---------DEVKEEVAKDYNIE 280

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL-----AKKGDFTPVIHGSFGYVIAH 352
           Q      +    +  G  +      ++  ++ FS+     AK GD         GY+I  
Sbjct: 281 QSKTNALEKYIAVKKGELATNGSMSLNEDNATFSIDEIRGAKVGDVIKPFVYDNGYLIVK 340

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +  P   +S+++ K+ I    +  K  E V+   K  
Sbjct: 341 IKSTTPPQPMSYEQAKEQILEIYKEQKLKELVENKAKTA 379


>gi|315637398|ref|ZP_07892611.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22]
 gi|315478290|gb|EFU69010.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22]
          Length = 485

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 166/426 (38%), Gaps = 21/426 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  +++  +  V  I++  +      F+ WG  D          V  +G ++V    + 
Sbjct: 1   MITWMQRHKKWLVITIWISTIAFVGAGFVGWGSYDYGKQGG---VVAKIGDREVTVEEYQ 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             +       S+  G + N++ A  +GL     + ++       + + +GL+     +  
Sbjct: 58  QEYSNLYSQYSRMFGDMFNNQIAEQLGLKDIAYNQVLQKNLFMAYGDSLGLDVTDEEIAR 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           E+ +   F  KD KF  D ++  L +  +  K + +   + L    V  +F   + P++ 
Sbjct: 118 ELLKYEAF-FKDGKFDKDTYLKVLNQNRLTPKHFEESLKRTLLLQKVQSLFE--VNPTSW 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++   +  F    +   +L++  V          L +++E  K++Y +     ++Y L 
Sbjct: 175 EVENISKLLFLEDDITIKILSSNDV--KVTVDEEGLKKYWEDNKNSYMS----EVTYDLE 228

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPE--IRTVEQLVFPNQKEADEAFQSLKKGKK 295
                      +  E++ +YEK K  Y   +  I+++E+     + + D+ F   +  K 
Sbjct: 229 IKEIPFINSNSTEAEIKEQYEKFKIDYKHEDGKIKSLEEATPQIKTDLDDKFTKTEALKI 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +++L +++ K    ++     +  +P      +     K G+       +  Y+I  V  
Sbjct: 289 YLKLKKDEEKFDKTLN---ILESKLPYSQENIAKIKEVKNGEVVKPFMENGKYIIVKVVK 345

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           + PS  + F++ K            ++K++E   + E     GT +  ++R  KI  +  
Sbjct: 346 LNPSKVLDFEQAKIKATQDYEKVLRAQKLQEQA-KAELKDFKGTDIAGVTRTSKIAGLSQ 404

Query: 416 PLVDFA 421
                 
Sbjct: 405 EESTNF 410


>gi|319957173|ref|YP_004168436.1| hypothetical protein Nitsa_1438 [Nitratifractor salsuginis DSM
           16511]
 gi|319419577|gb|ADV46687.1| hypothetical protein Nitsa_1438 [Nitratifractor salsuginis DSM
           16511]
          Length = 488

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 77/521 (14%), Positives = 175/521 (33%), Gaps = 41/521 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  ++K ++  V  I++  +      F+ WG        S +S++  VG   +    F 
Sbjct: 1   MIAWMQKHNKYLVVTIWIATIAFIGAGFVGWGTYKY---GSKASSIAQVGDVSITQEKFN 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            +++      +QK+G   +  +A+ + L + + + LV  A L    ++ G+      +  
Sbjct: 58  FTYQNLYREFAQKLGGKFDDAKAKEMKLPQLVFNRLVMQAYLLNLAKEYGIIVSDKELAE 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            IA  P F      F   ++ + L+   ++ K +       L+   ++ +   G  P   
Sbjct: 118 AIASLPSFQS-GGAFDKKIYETFLSSRRLSAKAFESILRDDLTIEKLMKLISKGSVPYER 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +  A     +   + Y VL+   V        A + +++E++K++Y+ P   ++  +  
Sbjct: 177 EVTAAALSVADK--IRYTVLSPSDV--NVSVDTAAVKKYWEQHKESYKTPRRYKLEILWT 232

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           D       I     EL+  Y KN   Y   + + +       Q   D   ++ KK     
Sbjct: 233 DTSA----INPDEKELEKFYHKNSFDYTDAQGKELSFEAAKAQVLRDYRIKAGKKAALLD 288

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK---GDFTPVIHGSFGYVIAHVS 354
            +A ++GK  +                L+D ++   K    G           Y    V 
Sbjct: 289 YIALKKGKKQAS----EVKTVAEGSPELSDELWKEIKTHSSGSLIKPKPVGDRYATVKVD 344

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
            +     + F    K            E + +  + L                +   ++ 
Sbjct: 345 QVIEPKIMDFDTASKLAEKDWLAQAKREALNKKVENL---------------MKNPAALT 389

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
                 +    +      +    Q L ++F  +D   K+  + L     ++  + +    
Sbjct: 390 RQSAYLSLTKTEELPPLNLGESLQFLQKLFTSND---KNGIIDLNKKKVVYAIVDQKFEK 446

Query: 475 RDRKLE-EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
            D  L   +     +  K+      +   + +  ++   +G
Sbjct: 447 GDENLSRSIKATADRIKKSEFEENLLKELSAKYPVKKFVKG 487


>gi|32266279|ref|NP_860311.1| hypothetical protein HH0780 [Helicobacter hepaticus ATCC 51449]
 gi|32262329|gb|AAP77377.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 499

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 99/491 (20%), Positives = 182/491 (37%), Gaps = 63/491 (12%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLS--DALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
           ++K  +  V  I++  +   F+  G+    +      +  V  VG   +    +  ++ +
Sbjct: 1   MQKHKKWLVITIWISAIA--FIGAGMVNWGSYGFGLNNDKVARVGAIDIHIPDYQRAYNE 58

Query: 63  ELGMISQ--KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                S   ++G +++  +A+ +GL +  L  +V  A L  F  D+GL      V  EI 
Sbjct: 59  VFNEYSHIPQLGGMLDEAQAKQLGLPQIALQRVVQQAQLLNFAYDLGLSVSDEEVSNEII 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            + ++  K+  FSH+++   L    ++  E+ +   K L    +  +    +  S+L + 
Sbjct: 119 NAKVYVDKEGHFSHEIYKQALKERQMSPSEFEEIIRKSLLIQKIFSVMNLNVSQSSLQIP 178

Query: 181 -------QAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRI 232
                  +       +   D +++ +  V  +A   ++  L  ++EK  DN++ P    I
Sbjct: 179 MVSVTPLEIAALEMADSVRDRLMVKSIPVTQVAFSSTDDELKAFWEKNADNWKTPMEFHI 238

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-------------IRTVEQLVFPN 279
            YI    +        S + L   YE  K  Y   +             IR V++L    
Sbjct: 239 EYIFVPFNA----QSPSEEALNKHYEDFKSDYLDNDGHLMSMEQSREKLIRDVQKL--EA 292

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           Q  A   ++ LK G        +QGK L+      F  +   D+ +AD    +A+ G   
Sbjct: 293 QSLAKREYRDLKNGS-------KQGKILTLKDNERFFIKNGVDLVVAD--MKVAQVGQVL 343

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
             I    G+V   + + K S   SF E K  +      TK  E + +  +   +  A GT
Sbjct: 344 KPIEADEGFVTLKLLDKKESVNKSFDEAKSAVKEMYEHTKRKESLVKLAQESVKNFA-GT 402

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
            +  I R      + L                 I  K   L +VFG  D         L 
Sbjct: 403 DIGFIDRFYNGAILTL----------------DINQKMHFLSQVFGSQDKEGY----VLF 442

Query: 460 DGSYMWVQIKE 470
           D   +  ++ E
Sbjct: 443 DDKVVLYRVLE 453



 Score = 43.8 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 94/264 (35%), Gaps = 41/264 (15%)

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT--SMDEISRREKIVSID 414
                +S ++ ++ +   ++  +A    K +Y+ L+     G   ++ +  R      +D
Sbjct: 269 NDGHLMSMEQSREKLIRDVQKLEAQSLAKREYRDLKNGSKQGKILTLKDNERFFIKNGVD 328

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           L + D             +    Q+L  +                D  ++ +++ +   +
Sbjct: 329 LVVADM-----------KVAQVGQVLKPIEA--------------DEGFVTLKLLDKKES 363

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
            ++  +E  + VK+ ++  K  E +   A + V  +   G +   I +    ++LT +  
Sbjct: 364 VNKSFDEAKSAVKEMYEHTKRKESLVKLAQESVKNF--AGTDIGFIDRFYNGAILTLDIN 421

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
            +M   ++ FG        S   E    F        V+++V      P  +++      
Sbjct: 422 QKMHFLSQVFG--------SQDKEGYVLF----DDKVVLYRVLEQSSVPKDKENNITMIA 469

Query: 595 TQMMNKDLLDSVIAYLKSQYSVTV 618
             +    +LD++   L   Y  T+
Sbjct: 470 KNIKYGAVLDTLAENLNKTYKTTI 493


>gi|301168101|emb|CBW27687.1| putative peptidyl-prolyl cis-trans isomerase [Bacteriovorax marinus
           SJ]
          Length = 495

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/408 (15%), Positives = 142/408 (34%), Gaps = 50/408 (12%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           K S      IF+ ++ + F+  G        +  ++V  VG + +    +   + ++L  
Sbjct: 9   KKSSNIFVTIFIGLIVISFMFTG---YQSLTTSPNSVAKVGDEFIKVEEYQREYNRQLEF 65

Query: 67  ISQKIGF-VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
               +G   + +++ +   + +  L NLV         + +G+      +  EI R P F
Sbjct: 66  FRNILGGKDLTTQQIQQFRIKETALSNLVQLKLTLILGDKVGVIPSSEEIKTEIKRQPYF 125

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
              + +FS + +   LA   +N  ++ +       R          M  S   L   + F
Sbjct: 126 Q-VNGQFSINRYKDLLAANRMNPAQFEESIKDQ-VRGMNSDAIFTSMPISESYLKDVENF 183

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
             +    + I ++   +      SN  +T++     +  R                    
Sbjct: 184 RSQKIEANIIEIDKEALRKKLTISNDEITKYLADETNANR-------------------- 223

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK---------GKKF 296
                  +Q+ + + K      E      ++F    + D+  Q LK             F
Sbjct: 224 -------VQSLFNERKPTLDQKEEVKARHILFKTDGKNDK--QKLKAITTLRGKLTKSNF 274

Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           I  A+    E+    +   L  F++  +         F L K G  +  +   FGY I +
Sbjct: 275 ISQAKQHTEEEAGKSTGGDLRWFTRGAMV-PEFEKVAFEL-KPGTISRPVKTPFGYHIIY 332

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
           V + K +   + +E K  +A+++     +++V+      ++ +A   +
Sbjct: 333 VEDKKEAKEATLEEFKNQLASELIRKTKNDEVEAMATEAKKEVASAAN 380



 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 100/268 (37%), Gaps = 19/268 (7%)

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
           F E K  +  +  +       K D K  ++ L   T++     +   +S      +    
Sbjct: 228 FNERKPTLDQKEEVKARHILFKTDGKNDKQKLKAITTLRGKLTKSNFISQAKQHTEEEAG 287

Query: 424 DVKGKEV------AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
              G ++      A +P  E++ F +     P +    V  P G ++   +++   A++ 
Sbjct: 288 KSTGGDLRWFTRGAMVPEFEKVAFEL----KPGTISRPVKTPFGYHIIY-VEDKKEAKEA 342

Query: 478 KLEEVLTDVKKDW---KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
            LEE    +  +          E ++++A + V   +   +    + K  G  +  + +I
Sbjct: 343 TLEEFKNQLASELIRKTKNDEVEAMATEAKKEVASAANSSRKLNALKKKYGIKIELSKEI 402

Query: 535 NRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDK 589
           +++D        +   ++ +F   ++  + +  +   + VV K +          +  D+
Sbjct: 403 SKLDGSTGQIQLEAANLNDIFKKGLDQSELYTFDRASNIVVVKTSKFDNKESVNEESMDE 462

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               L  +++K L   ++  L++  +V 
Sbjct: 463 RNRSLRNILSKKLKQDILKDLEASVTVK 490


>gi|118475291|ref|YP_891759.1| putative peptidyl-prolyl cis-trans isomerase D,-like protein
           [Campylobacter fetus subsp. fetus 82-40]
 gi|118414517|gb|ABK82937.1| putative peptidyl-prolyl cis-trans isomerase D, homolog
           [Campylobacter fetus subsp. fetus 82-40]
          Length = 485

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 156/424 (36%), Gaps = 21/424 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++K  +  V  I++  +      F+ WG  D   + + +++V  VG + +    F 
Sbjct: 1   MLTWMQKHKKYLVVTIWISTIAFVGAGFVGWGAYD--LNSNRATSVAKVGNRNITIQEFQ 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++       S         E+A  +GLD+  L  L+       +++DIGL      +  
Sbjct: 59  KTYSNLYNYYSSLSEGKFTQEQADEMGLDRIALQRLIQENLFLNYVDDIGLMVSKEELIA 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +     F   D KF    +   L R  I  K++ +  T  L               ++L
Sbjct: 119 ALTSDEGFQ-VDGKFDKSRYEDTLKRARITPKDFENELTNKLLLNKFFDAINLKTNQTDL 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +  +  F  +  S++ I  +   +          L   +EK K+ Y      +  + L 
Sbjct: 178 DILASSYFMEDKVSINIIKADKNSI----SVDENELKDLWEKSKNRYLT----KSKFELQ 229

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                +  I++++  L+  +E+N+  Y     + +      +  + D   +  +K     
Sbjct: 230 TKFIPQTNIDVNDTVLEEFFEENRGNYRDGFDKLLTFDKAKDDVKYDYELKQARKTALEE 289

Query: 298 QLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            L  ++G+S +  ++      E  P   L D+     K GD         GY+IA +   
Sbjct: 290 YLKIKKGESNATTAVTVLEDNEDFPINELRDA-----KVGDVLKPFEYKNGYMIAELVGK 344

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
                +S++E K  +       K  + ++E  K+     + G  +  +SR  K     L 
Sbjct: 345 NMPEVMSYEEAKDALTKVYMDEKGKKLLEEKAKQSLNNFS-GKDIGFVSRDTKKSIDGLS 403

Query: 417 LVDF 420
             ++
Sbjct: 404 ETEY 407



 Score = 40.4 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 82/256 (32%), Gaps = 41/256 (16%)

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
           +F + K D+     + +A +   E+Y ++++  +  T+   +    +   I+       G
Sbjct: 265 TFDKAKDDVKYDYELKQARKTALEEYLKIKKGESNATTAVTVLEDNEDFPINELRDAKVG 324

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
             +K  E                                 YM  ++           EE 
Sbjct: 325 DVLKPFEYK-----------------------------NGYMIAELVGKNMPEVMSYEEA 355

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
              + K +   K  + +  KA Q +  +   GK+            ++ +    +D  ++
Sbjct: 356 KDALTKVYMDEKGKKLLEEKAKQSLNNF--SGKDI---------GFVSRDTKKSIDGLSE 404

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM-NKD 601
                 I ++F  P +          + Y + +     +  V+E +  +S     + N  
Sbjct: 405 TEYLTFIMKLFESPNKNGYVMLDTKAVVYSILEQRLLNLDKVKEYNALLSQNASAIKNGQ 464

Query: 602 LLDSVIAYLKSQYSVT 617
           L   ++  L+ +Y + 
Sbjct: 465 LERDLLDALQKRYKIE 480


>gi|189184244|ref|YP_001938029.1| peptidyl-prolyl cis-trans isomerse D [Orientia tsutsugamushi str.
           Ikeda]
 gi|189181015|dbj|BAG40795.1| peptidyl-prolyl cis-trans isomerse D [Orientia tsutsugamushi str.
           Ikeda]
          Length = 517

 Score =  197 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 85/459 (18%), Positives = 179/459 (38%), Gaps = 30/459 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQK-VPFSSFINS 59
           ML  +R AS +   KI +++L +  + W +     S + SS +V+  + K +  S F+ +
Sbjct: 1   MLNKLRTASHSIAFKILILILILASVFWSIGTMFHSSNNSSDIVTFTKAKNITKSEFMQA 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
               L +   +I    +        + + +L NL+S   L+Q   +  L      V+  I
Sbjct: 61  ----LKLAMHQIPQNSDQNLLTQNNIRELVLSNLISTHVLEQLAHEYNLTLSTAAVFKFI 116

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
             S  F+   N F  ++F + L    I+E +Y D   K      ++  F+      ++L 
Sbjct: 117 QNSKAFNNNQN-FDINIFRNILKNLHISEPQYFDQAAKQQLSEILLRQFINNNYVPSILT 175

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIAD---PSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
                   E R++  + ++ ++    +    PS+  L +++   +  +  PE + ISYI+
Sbjct: 176 KNIINLSAETRNIQLVSIDLQNEQLQSTLDSPSSEQLQEFYNNNQSKFEKPEQRHISYIV 235

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS--------PEIRT--VEQLVFPN-QKEADE 285
            D +  + K+ + N  L+  Y  + +++           E+R   V   V          
Sbjct: 236 LDNNYFKNKVIVDNKSLEEFYRTHSDQFSEKNSFTKNIAEVREKYVNHQVDKLFNDTITL 295

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPV 341
               +  G    ++A+     L  ++L + +K+ + +     ++ D+IF+L +     P+
Sbjct: 296 LEDEVASGSNSSEIAKMLNVKL--LTLNNVTKQKLANNKILSNVTDAIFALEEHETSYPL 353

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
              S   +I  +  I P+    F  V   +  + +     E+  E   + ++     T+ 
Sbjct: 354 DVSSKMLIIVSIQKIIPTAVEKFDNVLNQVQEEWKKNTIRERNIELLNKFQQT----TNA 409

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
           D      K   + +       +           + EQLL
Sbjct: 410 DNFIADAKKYKLTVKPNVIVTRLNNNTVELPKEFVEQLL 448


>gi|57242050|ref|ZP_00369990.1| conserved hypothetical secreted protein, putative [Campylobacter
           upsaliensis RM3195]
 gi|57017242|gb|EAL54023.1| conserved hypothetical secreted protein, putative [Campylobacter
           upsaliensis RM3195]
          Length = 501

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 95/522 (18%), Positives = 202/522 (38%), Gaps = 47/522 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGL---SDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++ V+   F+  G+       ++ + +S+V  VG +K+ F  F 
Sbjct: 1   MLTWMQHHKKYLVVTIWISVIA--FVGAGVVGWGAYDYNQNRNSSVAIVGNEKISFVEFN 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + Q  G  +Q     ++ E A  +GL    L++L+    L  F +++GL A+   V  
Sbjct: 59  LRYNQIYGYYNQISNGALSEENAEKLGLKDIALNSLIEDKLLLNFAKNLGLWANENEVIQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           E++ +  F   +  F  +++ + L +  I  K Y    +  +    +  +F    + + L
Sbjct: 119 ELSATEEFQNINGIFDKNIYYAILKQNNILSKNYEQILSDRIILNKLNKIFEFPAKENEL 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +  A  F  +   +  I  + + +          L Q +E +K++++  +    SY L 
Sbjct: 179 QMLAASYFMQDALEIAKITFDKKDLA----VDENALKQLWEAHKNDFKTQK----SYELS 230

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293
               + KK   S DEL+A Y  E NK KY + + + ++  +       D + +  K    
Sbjct: 231 SYFIEAKKSNFSQDELRAFYQNENNKFKYKAQDGKILDFELAKEMVIKDLSLEKTKNLAN 290

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF------- 346
           +KF+ L  ++     D ++         D +    + +  K  D    I           
Sbjct: 291 EKFVALRNQKDDFQKDFNISE------EDQNYPLELLAKTKNKDILKPIIWQKCENKICK 344

Query: 347 -GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
            G++I  ++   P    +F+E + ++        A + ++E  ++       G  ++ + 
Sbjct: 345 DGFIILRLNQTNPVRVKNFEEARAEVLPMYYSEVAQKALEEKAQKAL-PTFKGIELEFVD 403

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
           R     +  +             E+         L +VF  D        V + D   + 
Sbjct: 404 RNSIKDAKKV-----------SDEILNNAEFSFFLSQVFNTD---QNSSYVLINDSKAIL 449

Query: 466 VQIKESI-PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
            +IK+       +   +  T ++   KT+K++E       +L
Sbjct: 450 YRIKKQKLNPNKQDFNQYQTMLESSLKTLKSSEIKQELLEEL 491



 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 91/267 (34%), Gaps = 34/267 (12%)

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +    + F+  K+ +   + + K      E +  L            IS  ++   ++L 
Sbjct: 262 QDGKILDFELAKEMVIKDLSLEKTKNLANEKFVALRNQKDDFQKDFNISEEDQNYPLELL 321

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
                   +K         K                     +    ++ +++ ++ P R 
Sbjct: 322 AKTKNKDILKPIIWQKCENK---------------------ICKDGFIILRLNQTNPVRV 360

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           +  EE   +V   + +    + +  KA + +  +      F D      A  ++   +N 
Sbjct: 361 KNFEEARAEVLPMYYSEVAQKALEEKAQKALPTFKGIELEFVDRNSIKDAKKVSDEILN- 419

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFI 591
            + E  FF    +SQVF+        + + N    +++++   K+ P ++     +    
Sbjct: 420 -NAEFSFF----LSQVFNTDQNS--SYVLINDSKAILYRIKKQKLNPNKQDFNQYQTMLE 472

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           S L  + + ++   ++  LK  Y + +
Sbjct: 473 SSLKTLKSSEIKQELLEELKKTYKIKI 499


>gi|237752705|ref|ZP_04583185.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376194|gb|EEO26285.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 485

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 167/420 (39%), Gaps = 29/420 (6%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  ++K  +  +  I++  +      F+ WG   A    + S+    VG +++      
Sbjct: 1   MIGFMQKHKKYLIVTIWISAIAFLGAGFVGWG---AYSFSNTSNAAAVVGDRQITIDRLQ 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + +   + +Q     +++E+A+ +G++++ L+ L+S A +  +  D+GL      +  
Sbjct: 58  REYARLYNVYNQLFNGNLDNEQAKKLGIEEQALNTLISRALMLNYAHDVGLRISQEEIIQ 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +    +F   + KF   ++   LA   +  K++ +   + +    +  +    + P  +
Sbjct: 118 TLTAMDIFQN-NGKFDETIYKRLLADNQMRPKDFEEELGEGILLQKLDALLEIPLTPLEI 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                  F  ++  +  +           +P+   + +++E+ KD Y+        Y + 
Sbjct: 177 QTISEAVFSEDHLKIQVL----NDSEITFNPTEEEIKKYWEENKDIYQTQR----GYEVL 228

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
            V  K   I + N+ L+  YE  K ++     +     + P  K  D+     K  +   
Sbjct: 229 KVSVKSDSIPVDNETLKKHYEDFKNQFLDENGQ-----LLPFDKAKDKVIAHYKSSQAEK 283

Query: 298 QLAEE-----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           +  +E     +G++    SL  +  +   D    + + S AK+ +    I     ++   
Sbjct: 284 ESLKEYISLRKGENKKAESLVIYEGDSNYDTEFLN-LLSQAKEQETLKPIKVKGEFITIK 342

Query: 353 VSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
           +  I PS   S++  K+D I + + + K     ++    L +F   G  +  +SR  KI 
Sbjct: 343 IQKIIPSEPKSYEAAKQDAIEDFITLRKTQLLEEKAALLLADF--KGVDVGYVSRENKIA 400


>gi|315638232|ref|ZP_07893414.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
           upsaliensis JV21]
 gi|315481768|gb|EFU72390.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
           upsaliensis JV21]
          Length = 501

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 96/522 (18%), Positives = 202/522 (38%), Gaps = 47/522 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGL---SDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++   +  V  I++ V+   F+  G+       ++ + +S+V  VG +K+ F  F 
Sbjct: 1   MLTWMQHHKKYLVVTIWISVIA--FVGAGVVGWGAYDYNQNRNSSVAIVGNEKISFVEFN 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + Q  G  +Q     ++ E A  +GL    L++L+    L  F +++GL A+   V  
Sbjct: 59  LRYNQIYGYYNQISNGALSEENAEKLGLKDIALNSLIEDKLLLNFAKNLGLWANENEVIQ 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           E++ +  F   +  F  +++ + L +  I  K Y       +    +  +F    + + L
Sbjct: 119 ELSAAEEFQNVNGIFDKNIYYAILKQNNILSKNYEQILGDRIILNKLNKIFEFPAKENEL 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +  A  F  +   +  I  + + +          L Q +E +K++++  +    SY L 
Sbjct: 179 QMLAASYFMQDALEIAKITFDKKDLA----VDENALKQLWEAHKNDFKTQK----SYELS 230

Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293
               + KK   S DEL+A Y  E NK KY + + + ++  +       D + +  K    
Sbjct: 231 SYFIEAKKSNFSQDELRAFYQNENNKFKYKAQDGKILDFELAKEMIIKDLSLEKTKNLAN 290

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF------- 346
           +KF+ L  ++     D ++         D +    + + AK  D    I           
Sbjct: 291 EKFVALRNQKDDFQKDFNISE------EDQNYPLELLAKAKNKDILKPIIWQKCENKICK 344

Query: 347 -GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
            G++I  ++   P    +F+E + ++        A + ++E  ++       G  ++ + 
Sbjct: 345 DGFIILRLNQTNPVRVKNFEEARAEVLPMYYSEIAQKALEEKAQKAL-PTFKGIELEFVD 403

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
           R     +  +             E+         L +VF  D        V + D   + 
Sbjct: 404 RNSIKDAKKV-----------SDEILNNAEFSFFLSQVFNTD---QNSSYVLINDSKAIL 449

Query: 466 VQIKESI-PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
            +IK+       +   +  T ++   KT+K++E       +L
Sbjct: 450 YRIKKQKLNPNKQDFNQYQTMLESSLKTLKSSEIKQELLEEL 491



 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 95/267 (35%), Gaps = 34/267 (12%)

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           +    + F+  K+ I   + + K      E +  L            IS  ++   ++L 
Sbjct: 262 QDGKILDFELAKEMIIKDLSLEKTKNLANEKFVALRNQKDDFQKDFNISEEDQNYPLEL- 320

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
                          A    + +L  +        K       DG ++ +++ ++ P R 
Sbjct: 321 --------------LAKAKNKDILKPI-----IWQKCENKICKDG-FIILRLNQTNPVRV 360

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           +  EE   +V   + +    + +  KA + +  +      F D      A  ++   +N 
Sbjct: 361 KNFEEARAEVLPMYYSEIAQKALEEKAQKALPTFKGIELEFVDRNSIKDAKKVSDEILN- 419

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFI 591
            + E  FF    +SQVF+        + + N    +++++   K+ P ++     +    
Sbjct: 420 -NAEFSFF----LSQVFNTDQNS--SYVLINDSKAILYRIKKQKLNPNKQDFNQYQTMLE 472

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           S L  + + ++   ++  LK  Y + +
Sbjct: 473 SSLKTLKSSEIKQELLEELKKTYKIKI 499


>gi|268680048|ref|YP_003304479.1| peptidyl-prolyl cis-trans isomerase D,- like protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618079|gb|ACZ12444.1| putative peptidyl-prolyl cis-trans isomerase D,- like protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 486

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 171/447 (38%), Gaps = 35/447 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  +++  +  V  I++  +      F+ WG  D   +   +++V  VG + +    F 
Sbjct: 1   MITWMQRHKKYLVVTIWISTIAFVGAGFVGWGAYD--LNQDRAASVAKVGNRTISVQEFQ 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +++       +  +   +  E+A  +GLDK ++ +L++   L  + +++GL         
Sbjct: 59  SAYASHYNFYNNLLQGQLTQEQAEQMGLDKIVMSSLINQTLLLNYADELGLLVSKEETME 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +  +P F  ++  F+ +++ + L    I   +Y     K +  T +  +F        +
Sbjct: 119 RLKNNPNFQ-ENGVFNKELYYTILKSNRIKPNDYEHELAKEILHTKLENIFKLPASDKEI 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +  +  F  +  +++ I LN   V A        +  ++EK K NY   +   +  +  
Sbjct: 178 EMFASAFFMEDRLAIETISLNANEVSA----DEEAIKAYWEKNKANYLTQKSYTLELLNL 233

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                  K    +  L+A Y + K  Y   + + +   +F   KE       LK  KK  
Sbjct: 234 PPS----KTPFDDKTLEAFYAEEKHNYQHADGKLM---LFEEAKEKLAIDLRLKNDKKS- 285

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK-----KGDFTPVIHGSFGYVIAH 352
             A E   +     + +   + + D    DS+F + K     K +    +  +  YV+  
Sbjct: 286 --ALESFLAFKKGEINATETKVVYDT---DSLFPMDKIQIAAKDEVLKPVIINNQYVVIR 340

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-------TSMDEIS 405
           V  IK    +S++  KK+ +N +  T   E +++      E             S+  I+
Sbjct: 341 VKEIKFPEPMSYEMAKKEASNDLLKTLKEEALEKKAHAKVEQFKGNDIGFVSRDSVKSIA 400

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAA 432
              +  S +     F     KG ++  
Sbjct: 401 GLNEAKSAEFLSHVFDNTAKKGYKIID 427



 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 74/514 (14%), Positives = 164/514 (31%), Gaps = 79/514 (15%)

Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
            A   +V         F        ++ + + L  + + +++        +  + ++   
Sbjct: 41  AASVAKVGNRTISVQEFQSAYAS-HYNFYNNLLQGQ-LTQEQAEQMGLDKIVMSSLINQ- 97

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP- 227
                      D+      +  +++ +  N           N  L  ++   K N   P 
Sbjct: 98  ----TLLLNYADELGLLVSKEETMERLKNNPNFQENGVF--NKEL--YYTILKSNRIKPN 149

Query: 228 --EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEAD 284
             E++    IL    E   K+  S+ E++         +F  +   +E +    N+  AD
Sbjct: 150 DYEHELAKEILHTKLENIFKLPASDKEIEMF----ASAFFMEDRLAIETISLNANEVSAD 205

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           E        K       ++  +L  ++L   SK    D +L    F   +K         
Sbjct: 206 EEAIKAYWEKNKANYLTQKSYTLELLNLPP-SKTPFDDKTLE--AFYAEEK--------- 253

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
                  H         + F+E K+ +A  +R+        +    LE FLA        
Sbjct: 254 -------HNYQHADGKLMLFEEAKEKLAIDLRLK------NDKKSALESFLAF------- 293

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
             ++  ++     V +    +   +   I  K+++L  V              + +  Y+
Sbjct: 294 --KKGEINATETKVVYDTDSLFPMDKIQIAAKDEVLKPV--------------IINNQYV 337

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            +++KE         E    +   D       E +  KA+  V ++           K  
Sbjct: 338 VIRVKEIKFPEPMSYEMAKKEASNDLLKTLKEEALEKKAHAKVEQF-----------KGN 386

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
               ++ + +  +   N+    + +S VF    +       +  + Y + +        +
Sbjct: 387 DIGFVSRDSVKSIAGLNEAKSAEFLSHVFDNTAKKGYKIIDDKAIVYEILEQKLLNSDKI 446

Query: 585 QEKDKFIS-YLTQMMNKDLLDSVIAYLKSQYSVT 617
           ++    IS  ++QM  K+L  ++I  L + Y V 
Sbjct: 447 KQHVSLISDNVSQMKQKELNQNLIKKLAATYKVE 480


>gi|213026808|ref|ZP_03341255.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 257

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 119/264 (45%), Gaps = 13/264 (4%)

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++++ K  +  PE  R+SYI  D      +  +S+ ++QA Y+++ +++  PE      +
Sbjct: 1   YYDQNKVRFMTPEQFRVSYIKLDAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSII 58

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFS 331
               + +A     +L KG+ F  LA+E+   +    +   +G   +       L ++   
Sbjct: 59  QTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--G 115

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           L +KG  + VI  S G+++A + +I+P+      EV+ DIA +++  KA +      +++
Sbjct: 116 LKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKV 175

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPL 450
            +  A     + ++  E++  +      +  +D   +E+   P  + +    + G++   
Sbjct: 176 SD--AASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTP 233

Query: 451 SKDHTVALPDGSY-MWVQIKESIP 473
             +  +   DG     V++ E  P
Sbjct: 234 GPNSDIITVDGDRAFVVRVSEHKP 257



 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 70/201 (34%), Gaps = 9/201 (4%)

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
            ++R +    K ++D K + + L  G     +++     S D+      G     +E A 
Sbjct: 51  ERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKE---KSTDIISARNGGDMGWLEESAT 107

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
           +P  +    +  G+   + K          ++  ++ +  PA+ + L EV  D+    K 
Sbjct: 108 VPELKNAGLKEKGQISGVIKSSV------GFLVARLDDIQPAKVKPLSEVRDDIAAKVKQ 161

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
            K  +   +   ++    S + ++     +  G   + T   +R     +         +
Sbjct: 162 EKALDAYYALQQKVSDAASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAI 221

Query: 553 FSGPVEMVKCFPIENGLSYVV 573
           F+G +      P  N     V
Sbjct: 222 FNGGLVGENGTPGPNSDIITV 242


>gi|261365094|ref|ZP_05977977.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria mucosa ATCC
           25996]
 gi|288566520|gb|EFC88080.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria mucosa ATCC
           25996]
          Length = 511

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 159/414 (38%), Gaps = 45/414 (10%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A+I L ++ + F+ +G+  A    SGS  +V VG +K+   +  N+ + E          
Sbjct: 12  AQILLGLIALTFIGFGVETA--RNSGSDYIVKVGSEKISDHTLNNAVQAEQA-------- 61

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                 A      + I   LV  A L +  + +G++    +V   I   P FH  + KFS
Sbjct: 62  ------AGGGQSREAIFSGLVQRAYLKEGAKMMGIDVSMDQVKQAIVDDPAFHDANGKFS 115

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
             +F   L++  ++E ++ID   +  +  +++ +   G   S+   +Q  +    NR++ 
Sbjct: 116 QALFTQYLSQRHMSEDQFIDDLREQFALQNLINLVQNGAIISDSQAEQLIKLTQSNRTIR 175

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
                     A     +A L +++E +K +Y  P+  ++ Y+  +     +K  IS DE+
Sbjct: 176 SFTFRPETFAAQVKTDDATLQRYYESHKKDYLIPQAVKLEYVALNAAHLAEKQSISADEV 235

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE----------Q 303
           +  +++              +L F  +K   EA   LKK       A+E           
Sbjct: 236 KKAFDEEVAALPQN----APKLEFDKEKARIEAALKLKKASADFNAAKENLAEEAFNHPN 291

Query: 304 GKSLSDISLG--------SFSKEYIPDVSLADSIFSLAKKGDF------TPVIHGSFGYV 349
               +   LG          ++       + D++ S A   D       + +I+     V
Sbjct: 292 SLDEAAKKLGLKIETSDQWLTQADAKAAGMPDALISAAFSEDVLKKKHNSDIINIDNNTV 351

Query: 350 -IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            +     ++   T  F E K  +      +++ +  ++  +     L  G ++D
Sbjct: 352 WVVRAKEVREEKTAGFTEAKDKVQTAYVRSESVKLAEKKAQETLADLKAGKNVD 405


>gi|157164574|ref|YP_001466661.1| glutamate-1-semialdehyde 2,1-aminomutase [Campylobacter concisus
           13826]
 gi|112800465|gb|EAT97809.1| putative peptidyl-prolyl cis-trans isomerase D, homolog
           [Campylobacter concisus 13826]
          Length = 485

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 154/395 (38%), Gaps = 22/395 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ML  ++K  +  V  I++  +      F+ WG  D   + + +++V  VG + +      
Sbjct: 1   MLSWMQKHKKYLVVTIWVSTIAFVGAGFVGWGAYD--LNSNRATSVAKVGHRNISVQELQ 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + +     +      +  E+A  +GL+   L   +    L  F +DIGL  +   V  
Sbjct: 59  QKYDRLYQYYNNVFEGKLTQEKAEELGLENAALQAAIQENLLLNFADDIGLSVNKDDVLK 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I   P F  KD  F  +++   L R  IN  ++ D+    +    +  +        ++
Sbjct: 119 YIIVDPTFQ-KDGVFDKNLYYDVLRRARINPTDFEDNLKLTILLDKLRTILNLPASKEDI 177

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            + +A  F  +  +V  +  +   +          L   +E  K+NY A    +  Y + 
Sbjct: 178 AMMEASFFMQDKLAVQIVSADQNEI----KVDEKELKDLWEINKNNYMA----KTLYGID 229

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKY--FSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
               + +K + +   L++ Y +N++KY     +I+   ++     K+ +         +K
Sbjct: 230 TYFVESEKSDANESVLKSYYNENQDKYKGSDDKIKPFNEVKAEVNKDYNIEQSKTNALEK 289

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           ++ + + +  +   IS+   +  +  D          AK G+         GY+IA V +
Sbjct: 290 YVAVKKAELATNGFISVNEDNATFSLDEIKG------AKVGEVIKPFIYKDGYLIARVKS 343

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           I P   +SF++ + ++    +  K  E +    K 
Sbjct: 344 ITPPQPMSFEQARANVLEIYKSKKEKEILTAKAKD 378


>gi|268316323|ref|YP_003290042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
 gi|262333857|gb|ACY47654.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
          Length = 696

 Score =  192 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 97/712 (13%), Positives = 221/712 (31%), Gaps = 123/712 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFS---VSGSSTVVSVGRQKVPFSSFI 57
           +  +R+ +      + L +L + F +IW L D+           T+  V    + +  ++
Sbjct: 4   MNKLRENTG-----VILWILVISFGIIWVLQDSGAFDVVGRTGDTIAEVNGDPISYQEYV 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            + + ++    Q+ G     + +    + +++ + LV      Q +E +G+      V  
Sbjct: 59  RAVEAQMQAYQQQTGEAPTPQMSD--LIREQVFNALVEERLRQQAMERLGITVTDDEVVQ 116

Query: 118 EIARS-------PLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKMLSRTDVVGMF 168
            +            F  ++   +  +  + +      E      ++     +R  +  + 
Sbjct: 117 MVLGDNPHPIIKAYFGDENGNVNRALLQNFIDNPAAREDWIRLEEYLRAERARQKLEQLL 176

Query: 169 VGGMRPSNLLLDQ--------------------------------AKRFYFENRSV--DY 194
           +  +  S+  +++                                 +R+Y E+R      
Sbjct: 177 LATVHVSDQEVEEEYRRRTLRADARYVALRYAEVPDDSVTVTESDLRRYYNEHRDDFKRK 236

Query: 195 IVLNNRHVPAIADPS-NAVLTQWFEKY--KDNYRAPEYKRISYILFDVHEKEKKIEISND 251
                 +V    +P+    L    E    K+ +   E   +    +             D
Sbjct: 237 RTYRVVYVALPKNPTAEDTLQVLEELNRLKERFAQTENDSLFLARYASERPFTDAFFRRD 296

Query: 252 ELQAEYEKNKEKYFSPEIR--------------------------TVEQLVF-------- 277
           EL             P                                 ++         
Sbjct: 297 ELDPALGDVVFDDPQPGKVVGPVVAGGLAHLVKIRAVRPSEETVIRARHILIRAPEGDAE 356

Query: 278 ---PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIF 330
                ++EA E  + L++G  F  LA E             LG F +  + +    ++ F
Sbjct: 357 ARRQARQEALELKRQLEQGADFATLAREHSDDPGSARRGGDLGWFGRGRMVEP-FEEAAF 415

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           S A  G     I   FGY +  V+               D+A ++  + A+  +    +R
Sbjct: 416 S-APIGRVVGPIETRFGYHLIEVTGRSNVEVQ-----IADLAMRLAPSLAT--LNRIQER 467

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
           +E+         +     + + + +  +     +   + +  I     +L  + G D+  
Sbjct: 468 MEDLAYYAEESGDFEGEAQRMGLQVQEMRV---EEDQQFLPGIGQSRAILNFLAGADEG- 523

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
                + L D  ++ +Q+ E IP   R  EEV  +++      K  E   ++  + + + 
Sbjct: 524 DVSQVIELDD-RFIVLQLVEVIPEGYRSFEEVREEIRPRVLLEKKKEVQVARMRRALQQ- 581

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENG 568
                 F  + + LG ++ T  Q++         G +   I  VF           +E  
Sbjct: 582 ----HGFDGLAEALGTTVQTVTQLSYNQTLIPGLGREPRFIGTVFGLQEGTT-SGVVEGE 636

Query: 569 LSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +  V ++T     P    Q +++    L     + +L   +A L+ Q  + 
Sbjct: 637 NAAFVVQLTKLYEPPPLGEQMREQIRQQLLNQRRQQVLTQWLAALREQADIK 688


>gi|257458734|ref|ZP_05623857.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
 gi|257443722|gb|EEV18842.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
          Length = 485

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/394 (18%), Positives = 160/394 (40%), Gaps = 21/394 (5%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++K  ++ +  I++  +      F+ WG  D   + +GS  +  VG+  +      
Sbjct: 1   MIEWMQKHKKSLIPTIWISTIAFVGAGFVGWGAYDMNANRAGS--IARVGQISITNQELN 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + +    +S         E+A+++ LD+  +D L+  A    F +D+G++A    V  
Sbjct: 59  TKYSELYNRLSAMSDGQFTQEQAKNMHLDQIAVDQLIGEAYFLNFAKDLGIQASDKDVAE 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +  SP F  ++  FS +++ + +   G+ +KE+  +  K+L+   +       + PS  
Sbjct: 119 FVVSSPNFQ-ENGAFSKELYDNVVRNSGLTKKEFERNLQKVLTLEKLGKALK--ITPSPK 175

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           +++           V   ++      A    S+  L +++E  K ++   +   +     
Sbjct: 176 IVEAFAASQLMQDKVSAEIIYAD---ANVTFSDDELKKFWEGEKSHFMTEKKYTLGAYFV 232

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                  K +++  EL   Y++++ +Y S + + ++          D     +KK     
Sbjct: 233 APS----KADVNETELSKFYKEHRGEYRSLDDKLLDFAEAKPDVLKDYRMDQVKKDATKD 288

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            L  ++GK      L +         +   S   +AK GD         GY+IA ++ ++
Sbjct: 289 YLEIKKGK------LDTNETIVATASNFPISEIEVAKPGDVIKPFEYKGGYLIAKLNGVE 342

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
               +SF+E K   + +    K  E +++  +  
Sbjct: 343 QPRQMSFEEAKSLASKEFETKKRKELLEKRAQDA 376


>gi|291276818|ref|YP_003516590.1| hypothetical protein HMU05900 [Helicobacter mustelae 12198]
 gi|290964012|emb|CBG39851.1| putative periplasmic protein [Helicobacter mustelae 12198]
          Length = 490

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 83/403 (20%), Positives = 155/403 (38%), Gaps = 35/403 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPF---LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           MLE +++  +  V  I++ V+ + F   + W  SD  F+    + V  VG+ K+    F 
Sbjct: 1   MLEWMQRHKKYLVVTIWVSVIALVFAGMVGWNPSDISFAG---NNVAKVGKIKISDQEFQ 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++++     +Q +G  ++ ++A++  LD   L  L+  A L  F  D+GL      +  
Sbjct: 58  YTFQRVFNEYNQMVGGDLDMDQAKNFQLDNITLQQLIQKAQLQNFALDLGLRVQDREIIE 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++  F   D  F   ++   L    +N K +       L    ++  F      + L
Sbjct: 118 VIEKNESFQR-DGTFDKKLYREVLKNNNLNVKFFEQSVRDSLLIQKLLEFFPAS--TTQL 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                        +++Y VL+    P     +   L  ++EK K NY  P    +     
Sbjct: 175 ERRSIGGSIALTDTIEYEVLSTS--PIKQQITEQKLKDFWEKNKANYTNPATVTLEIAKI 232

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFS-----PEIRTVEQLVFPN--QKEADEAFQSL 290
                  K E  N  LQ  Y +NK  Y        +   VE+ V  +   ++A E+   L
Sbjct: 233 SPS----KQEFDNSSLQNFYNENKTLYLDSNGQLQDFSKVEKKVQADYQDQKAKESALRL 288

Query: 291 K---KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           K   +  +   L  ++     D  L + +   + D  + D+I  +  +GD          
Sbjct: 289 KPKFRKNELKDLKTQKLTIALDEKLSADTITQLKDARIGDTINPILYQGD---------- 338

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           YVI +V   +   T  F   K+     ++     E++K   ++
Sbjct: 339 YVIGNVITKQEKNTKDFASAKEQARKDLQKQIMLEELKALAQK 381


>gi|296273463|ref|YP_003656094.1| hypothetical protein Arnit_1933 [Arcobacter nitrofigilis DSM 7299]
 gi|296097637|gb|ADG93587.1| conserved hypothetical protein [Arcobacter nitrofigilis DSM 7299]
          Length = 488

 Score =  190 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 79/418 (18%), Positives = 152/418 (36%), Gaps = 33/418 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  +++  +  V  I++ V+      +    +    S S +V  VG +K+    +   +
Sbjct: 1   MLTWMQRHKKWLVITIWISVIAFVGAGFVGWGSYQYGSSSGSVAVVGDRKISVEEYQREY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                  SQ  G   N E A+ +GL    L  ++    +  + +D+GL      +  E+ 
Sbjct: 61  SSLYRQYSQVYGNKFNQEMAKRIGLPDAALSLVIQKNLILSYADDLGLLVTDKDIAKELV 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           + P F  KD KF  +++V  L++ G     Y     + L    V  +      P    + 
Sbjct: 121 QMPSF-IKDGKFDKELYVKVLSQNGTTPVVYEKSLKRDLLLQKVESLL--NFTPQANEVH 177

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
              +  F    V   +L+ + +    D ++  L +++   K  Y + +   +      V 
Sbjct: 178 NLAKLLFSQDDVSIKLLDPKSI--KVDVTDEKLKEYWSTNKIKYLSTDSYDLEISKLPVK 235

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRT----------VEQLVFP-NQKEADEAFQS 289
                I  S +EL+  Y K K  Y   + +           ++ +    ++K+A   + +
Sbjct: 236 I----ITPSENELKEHYAKFKTDYKKEDGKLKTFDEAKDDMIKVISLKESKKDALRKYLT 291

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           LKKG+     A+             FS E I ++         +K G          G+ 
Sbjct: 292 LKKGE-----AKFDKTETIYEDKLPFSAENINEIKT-------SKLGVVLKPFEDKDGFT 339

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           I  V        +S++  K  +       + SEK+K      E     G  +  +SR+
Sbjct: 340 IVKVLKKNDPKPLSYELSKDMVKADYIDIQRSEKMKALVAN-ELKNFTGEDLGFVSRK 396


>gi|224436614|ref|ZP_03657623.1| hypothetical protein HcinC1_01640 [Helicobacter cinaedi CCUG 18818]
 gi|313143113|ref|ZP_07805306.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128144|gb|EFR45761.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 492

 Score =  190 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 152/404 (37%), Gaps = 33/404 (8%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLS--DALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
           ++K  +  +  I++  +   F+  G+    +    S +  V  VG   +  + F   + +
Sbjct: 1   MQKHKKWLIVTIWVSAIA--FIGAGMVNWGSYGFGSSNDKVARVGDIDIHLAEFQREYAR 58

Query: 63  ELGMISQ--KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            L   SQ  + G +++  +A+  G+ +  L  L+    +     D+GL      V  EI 
Sbjct: 59  ILNEFSQISQFGGMLDEAQAKQFGIPQMALQRLIQQVQILNLANDLGLVVSDKEVGEEIV 118

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS--NLL 178
            + ++     +FS +V+   L  +G++  E+ +   K+L+   +  +           + 
Sbjct: 119 NAKVYVDDKGEFSQEVYRKALKEQGMSPSEFEEMVRKILTTQKLFSVMNITQVGPMLPIS 178

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +       N   D + +    +  +  +  +  L  ++EK  +N+++P   +I YIL 
Sbjct: 179 SSEMAALEMANAVRDRLRVEILPMDKVNIEIEDDELKAFWEKNAENWKSPMEFKIEYILV 238

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP-----------EIRTVEQLVFPNQKEADEA 286
                      ++++L   Y+  K  Y              E    +      +  A   
Sbjct: 239 PFA----SQNPTDEDLTKHYQDFKSDYLDENGNLLSFEESKEKLIKDVQKIQAESVAKRE 294

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           ++ LK          ++G+ LS      F  +   D+ + D    +A+ G     I    
Sbjct: 295 YRDLKN-------KSKKGEILSLKENERFFVKNGVDLVIED--MKVAQVGQVLKPIEVDK 345

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+V   + + KPS   SF+E K +       +K  EK+    K 
Sbjct: 346 GFVTLRILDKKPSVQKSFEEAKAEAKVLFESSKKREKLLALAKE 389



 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 98/258 (37%), Gaps = 43/258 (16%)

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT--SMDEISRREKIVSIDLPLVDF 420
           SF+E K+ +   ++  +A    K +Y+ L+     G   S+ E  R      +DL + D 
Sbjct: 270 SFEESKEKLIKDVQKIQAESVAKREYRDLKNKSKKGEILSLKENERFFVKNGVDLVIEDM 329

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
                       +    Q+L  +                D  ++ ++I +  P+  +  E
Sbjct: 330 -----------KVAQVGQVLKPIEV--------------DKGFVTLRILDKKPSVQKSFE 364

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           E   + K  +++ K  E++ + A + V  +  +G +   + +    ++LT +   +M   
Sbjct: 365 EAKAEAKVLFESSKKREKLLALAKERVKNF--QGTDIGFVDRFYNGAILTLDDGQKMSFL 422

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
           +  F             +      +E+    V++++    V   ++ D        M ++
Sbjct: 423 SHLFSS----------KQKEGYVMLEDKA--VLYRIVEQSVLNAKQGDAM--AFKSMKSE 468

Query: 601 DLLDSVIAYLKSQYSVTV 618
            +LD++  YL   Y  T+
Sbjct: 469 AVLDALAEYLNETYKTTI 486


>gi|126641683|ref|YP_001084667.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii ATCC 17978]
 gi|126387567|gb|ABO12065.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii ATCC 17978]
          Length = 286

 Score =  190 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 109/289 (37%), Gaps = 14/289 (4%)

Query: 93  LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
           +VS   L Q  E +G+     ++   +A+ P    ++ +FS  ++ + L   G+  +  I
Sbjct: 1   MVSRNLLIQQAEKLGISLSDAQIEQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLI 59

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
               +  +   +   F      S + L Q      E R++    +           SN  
Sbjct: 60  ASLRQDHALKMLTSTFADYSLVSKVDLMQIANLQTEQRTLHLASIKLDPYKTGLTASNQE 119

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
            T ++ K+++ ++ P    + Y++       K    ++ EL+  Y K  E       R V
Sbjct: 120 ATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAKRIV 179

Query: 273 EQLVFPNQKEADEAFQSLKK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV- 323
           + ++       D A Q L K        G  F Q A +  +  +  + G   + Y P V 
Sbjct: 180 KHILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVF 239

Query: 324 --SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
             +   ++ SL K G  +  +   +GY I   +  + +   SF+  K  
Sbjct: 240 SDAFDKTVLSL-KNGQISQPVKTQYGYHIIE-AETQANQIPSFEAEKPR 286


>gi|218680686|ref|ZP_03528583.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CIAT 894]
          Length = 194

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 70/194 (36%), Positives = 117/194 (60%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M  I+R+A++TWVAK+ +++L   F IWG+S +L +   S+TVV+VG Q V  + F  ++
Sbjct: 1   MFHILRRAAQTWVAKLLMLLLVASFGIWGVSRSLITGGNSTTVVTVGDQHVDVNEFHLAY 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++++  +SQ+ G  +  E+AR+ G+++++L  LV+GA+LDQ  ED+ L     R+   IA
Sbjct: 61  QRQVASLSQQFGMRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F   + KF  ++F+SRL    I + +YI   +K+  R+ VV     G      L+D
Sbjct: 121 DDPAFKAVNGKFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180

Query: 181 QAKRFYFENRSVDY 194
             K +  E+RS+DY
Sbjct: 181 ALKLYGDESRSIDY 194


>gi|222839633|gb|EEE77956.1| predicted protein [Populus trichocarpa]
          Length = 390

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/402 (18%), Positives = 147/402 (36%), Gaps = 42/402 (10%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK------ 295
            E  I +S D++++ Y +N E+   PE R    ++    K+A  A Q   K K       
Sbjct: 1   IEAGITLSEDDVRSYYNQNAERLAGPEERRASHILINASKDAPAAEQEKAKAKADELLAE 60

Query: 296 -------FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
                  F +LA+    + G + S   LG F +  +      D+ F + K GD + V+H 
Sbjct: 61  LRKDPKRFAELAKANSQDGGSAASGGDLGYFGRGAMVKP-FEDAAFGM-KVGDISDVVHS 118

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDE 403
            FGY I  + +IK     SF++++  +  +++  +A  K  E  +     +     S+  
Sbjct: 119 DFGYHIISLEDIKKPKAPSFEQMRPKLEAELKQQQAQRKFAELAEGFSNAVYEQSDSLQP 178

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDG 461
           ++ + K+       V        G  V       + L  +F  D   +K +T  V L   
Sbjct: 179 VAEKFKLTVQKADHVTR----QPGPNVKGPLANPRFLEALFSSDSLNNKRNTDAVELGSN 234

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
             +  ++ E  PAR   + EV   ++  +   K+AE   +     +  +    K   D  
Sbjct: 235 QLVAGRVVEYTPARTLPMAEVGDKLRTLYVAQKSAELAKADGEAKLAAW----KAKPDAA 290

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNS 579
           +   A +++ +Q        +    + +      P   +  +   +     Y V K+   
Sbjct: 291 QLPAAKVISRDQ-------PEGLSREVVDAALRAPTAQLPAWTGVDMGAQGYAVVKINRI 343

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLD---SVIAYLKSQYSVTV 618
              P  +     +     +    +    +    LK Q  V +
Sbjct: 344 VERPADDAQAAAAQKQDFLRSSAVAEAMAYYELLKKQLKVQI 385


>gi|224417810|ref|ZP_03655816.1| hypothetical protein HcanM9_00899 [Helicobacter canadensis MIT
           98-5491]
 gi|253827151|ref|ZP_04870036.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141352|ref|ZP_07803545.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253510557|gb|EES89216.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130383|gb|EFR48000.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 489

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/404 (18%), Positives = 163/404 (40%), Gaps = 20/404 (4%)

Query: 1   MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  ++K  +  +  I+   +  +   F+ WG  D     S S+ V  VG+ KV  +   
Sbjct: 1   MISFMQKHKKYLMITIWVSTIAFVGAGFVGWGSYDF---SSTSNAVAVVGKTKVSINEMQ 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + +  G+ +Q +G  ++ E+A+ +G++++ L+NL+  A +  +  D+GL A    +  
Sbjct: 58  REYSRLYGIYNQLVGGTLDEEQAKKMGIEEQALNNLIIKALMLNYAYDLGLRASKEEIIQ 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +  F   + +F   ++   L    +  K++ +   + L    +  +    + P  L
Sbjct: 118 AITSTESFQN-NGQFDEQIYKRILQENQLKPKDFEESIKENLILQKLDALLDMPLTP--L 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++     Y     V   +++ + +    +P+N  + +++E+ KD Y+      IS +  
Sbjct: 175 EIETLSAAYSMEDLVHIQIIDKKTI--NVNPTNEEVKRYWEENKDIYQTERGYEISSVFI 232

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
            +      IEI    L++ YE  K ++   E + +       Q          +K     
Sbjct: 233 PL----DSIEIQEASLESYYEDFKNQFLDSEGQVIPYEKAKEQVSEKYRDAQAQKEALKE 288

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF----GYVIAHV 353
            +A  + ++    +L  +       V   + + S AK+ +    I  +     GY+ A V
Sbjct: 289 YIALRKNENPKAENLIIYEGNEDYGVEFIN-LLSQAKEQETLKPIKIAKDKKSGYITAKV 347

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
             I PS   +++  + +       ++    +KE   +  E    
Sbjct: 348 IKIIPSEPKTYEAAQGNAKEDFVNSEKVRLLKEKATQALENFKG 391



 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 90/261 (34%), Gaps = 36/261 (13%)

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
               + +++ K+ ++ + R  +A ++  ++Y  L +          I    +   ++   
Sbjct: 259 EGQVIPYEKAKEQVSEKYRDAQAQKEALKEYIALRKNENPKAENLIIYEGNEDYGVEFIN 318

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           +    K+ +  +   I   ++                        Y+  ++ + IP+  +
Sbjct: 319 LLSQAKEQETLKPIKIAKDKK----------------------SGYITAKVIKIIPSEPK 356

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             E    + K+D+   +    +  KA Q  LE  K      D+G        T   + + 
Sbjct: 357 TYEAAQGNAKEDFVNSEKVRLLKEKATQ-ALENFKG----VDVGYVGYGETKTLKGLTKE 411

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF--KVTNSKVGPVQEKDKFISYLT 595
           +++      +   ++ S   E          + Y +F  +V NS +   Q  D  +   T
Sbjct: 412 ESQ------EFAQELMSKGEEKGYILLENKAILYKIFDQRVKNSAIIS-QNLDFLMQNGT 464

Query: 596 QMMNKDLLDSVIAYLKSQYSV 616
           Q+  + +    + YL   Y +
Sbjct: 465 QIKARIVEKEFLDYLSKTYKI 485


>gi|330975098|gb|EGH75164.1| periplasmic folding chaperone [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 239

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 86/241 (35%), Gaps = 7/241 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +       +SQ++G   +        L +  L  L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             ++   R   + R    + L      +    ++  +   ++++   + +PE   + YI 
Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--TSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237

Query: 237 F 237
            
Sbjct: 238 L 238


>gi|255601607|ref|XP_002537715.1| rotamase, putative [Ricinus communis]
 gi|223515366|gb|EEF24668.1| rotamase, putative [Ricinus communis]
          Length = 396

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 68/406 (16%), Positives = 150/406 (36%), Gaps = 41/406 (10%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQS 289
               + + ++E +  YE+N  K+   E R    ++               +K+ DE    
Sbjct: 1   MITSMRVGDEEAKKFYEENAAKFQGDEERRASHILVTFNGKKDAAAKAEAKKKIDEILAE 60

Query: 290 LKKGKK-FIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           +KK    F +LA++  +     + G    F K  +      D++F ++  G  +  I   
Sbjct: 61  VKKSPDKFAELAKKYSQDPGSAANGGDLGFVKRGLMVKPFEDALFGMS-PGSISGPIETE 119

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           FGY I  ++ +K     SF +VK  I  ++   KA  K  E        +   ++   + 
Sbjct: 120 FGYHIIKLNEVK-GAAQSFDQVKGQIRAELMYQKALAKFSETADNFSNEVYEQSN--SLD 176

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSY 463
              K   + +   D+  +D    + A     ++L   +F  +    K +T  V +   + 
Sbjct: 177 GAAKDFGVQVQKSDWLSRD----DAAKFFKSDKLANEIFSDEVRKDKRNTEAVEVSPNTL 232

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           +  ++ ++ PA  +   EV   ++   K  + A+    +  + + +  K G         
Sbjct: 233 VAARVTDARPASLKTFNEVQAGIEDKLKHEQAAKLAIQRGEKTLADLKKGG-------SA 285

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKV 581
              S  T  +I+R +   +      + + F      +  +    G    YV+ ++T  + 
Sbjct: 286 GDISWTTPVKIDRQN--PQGLSDGVMKEAFRMDGSKLPAYVGAAGKDGGYVLIRLTAVED 343

Query: 582 G----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           G        K    +     +  + L + +  L+   ++ V+ +L+
Sbjct: 344 GLQQLDTDTKKTAATEYEAALAAEYLTTFMKSLRIHANIKVNQDLL 389


>gi|188527796|ref|YP_001910483.1| conserved hypothetical secreted protein [Helicobacter pylori
           Shi470]
 gi|188144036|gb|ACD48453.1| conserved hypothetical secreted protein [Helicobacter pylori
           Shi470]
          Length = 517

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 167/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 31  MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 87

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 88  QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 147

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 148 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 205

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 206 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 262

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q + +   
Sbjct: 263 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKVNEKAL 318

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 319 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLVS 377

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G SM  +S        +
Sbjct: 378 QTKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSMGYVSPNFGGTINE 435

Query: 415 L 415
           L
Sbjct: 436 L 436


>gi|78777490|ref|YP_393805.1| hypothetical protein Suden_1292 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498030|gb|ABB44570.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 487

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/405 (21%), Positives = 161/405 (39%), Gaps = 37/405 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  +++  +  +  I++  +      F+ WG          +  V  VG  ++      
Sbjct: 1   MITWMQRHKKYLIITIWISTIAFVGAGFVGWGQYSY---GDKAGAVAKVGSVEITMGELQ 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            S+       SQ      + E+A+S GL  + L+ L   A +    +   LE     +  
Sbjct: 58  KSYSNIYAQYSQMFKGEFDEEKAKSFGLQSQALNFLTQQALVLNLAKSYNLEVSDEELLK 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI     F  KD  F  DV+   L++  I  KEY     K L     + +     + S  
Sbjct: 118 EITSKDYF-FKDGVFDKDVYKDVLSKNNIKTKEYEADIKKELLIRKTLSLLKIQTKESEQ 176

Query: 178 -LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            ++D A         +DY VLN   +  I D SN  L  ++EK ++N+ +     I YI 
Sbjct: 177 KIIDTAFSIAD---KIDYKVLNANQI--ILDTSNESLKSFWEKIQNNFMSEVSYDIKYIK 231

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV------EQLVF-----PNQKEADE 285
            D    +K  E ++  L   Y +NK      E + +      E++ +      ++KEA +
Sbjct: 232 HD----KKSNEYNDAALNEYYSENKISLKDGEGKIIPFEDAKEKIKYELDAKESKKEALK 287

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            + S KKG+  I+ +E Q  ++S  +    ++ +       ++I  L     F+  I   
Sbjct: 288 KYVSYKKGE--IEPSEIQTATISASNNSFGTEAF-------EAISKLTSTSPFSKPIMVE 338

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
             Y I  +    P+   S++E K ++       +   K++E  K+
Sbjct: 339 DNYFIFELVTTNPAKPKSYEEAKSEVLPIYESEQKKIKLEELAKK 383



 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 28/261 (10%), Positives = 93/261 (35%), Gaps = 37/261 (14%)

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
               + F++ K+ I  ++   ++ ++  + Y                 ++ +I   ++  
Sbjct: 259 EGKIIPFEDAKEKIKYELDAKESKKEALKKYVSY--------------KKGEIEPSEIQT 304

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
              +  +          +  +    +            + + D  Y   ++  + PA+ +
Sbjct: 305 ATISASNNS--------FGTEAFEAISKLTSTSPFSKPIMVEDN-YFIFELVTTNPAKPK 355

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             EE  ++V   +++ +   ++   A +    ++ +  ++     +   + LT       
Sbjct: 356 SYEEAKSEVLPIYESEQKKIKLEELAKKSFATFNGKITDYITANDSSLLTDLTK------ 409

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
           D  ++F      SQ      +      +E+G + V++ V   K+      D   + ++++
Sbjct: 410 DEADEFLSILFTSQ------DRRGYVNLESG-TVVMYNVLEQKLLSNTNTDP-NNSISRL 461

Query: 598 MNKDLLDSVIAYLKSQYSVTV 618
            +    + ++  L+S+Y   +
Sbjct: 462 KSTMFNEGLVKNLQSKYKTEI 482


>gi|315586916|gb|ADU41297.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 35A]
          Length = 517

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 164/421 (38%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+   S    VG+ K+      
Sbjct: 31  MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLDSGS-AAKVGQIKISQEELA 87

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 88  QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 147

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 148 AKEIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 205

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 206 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 262

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 263 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 318

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 319 RSYVALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 377

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                   F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 378 QTKDELQDFNEAKSTLKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 435

Query: 415 L 415
           L
Sbjct: 436 L 436


>gi|297380175|gb|ADI35062.1| Hypothetical protein HPV225_1003 [Helicobacter pylori v225d]
          Length = 517

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 31  MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 87

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 88  QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 147

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 148 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 205

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++L+   V      +   + +++E +K +++ P   +   +
Sbjct: 206 -LEQSSLSLWAKLQDKLDILILSPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 262

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 263 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 318

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 319 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 377

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 378 QTKDELQNFNEAKSVLKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 435

Query: 415 L 415
           L
Sbjct: 436 L 436


>gi|307637665|gb|ADN80115.1| Peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 908]
 gi|325996265|gb|ADZ51670.1| Peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 2018]
 gi|325997854|gb|ADZ50062.1| putative peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori
           2017]
          Length = 487

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 167/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E ++ +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYENHRKDFKKPTSFKTHSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++G + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKGNAKNYTTQDFEENNSPYTAEITQKLTAL-KPLEVLKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QVKDELQNFDEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTINE 405

Query: 415 L 415
           L
Sbjct: 406 L 406



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 88/263 (33%), Gaps = 43/263 (16%)

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           K      F+ V++ + + + + KA+EK    Y  L++  A   +  +        + ++ 
Sbjct: 260 KEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKGNAKNYTTQDFEENNSPYTAEIT 319

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
                                Q L  +     PL         DG  +   I +      
Sbjct: 320 ---------------------QKLTAL----KPLEVLKPEPFKDGFIVVQLISQVKDE-L 353

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           +  +E  + +K      KT   + + A + + ++  +GK+   +  N G ++   NQ   
Sbjct: 354 QNFDEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTINELNQEES 411

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
               N  F               V       G   V++++T          E+ +++ +L
Sbjct: 412 AKFINTLFNRQ-------EKKGFVTI-----GNKVVLYQITEQNFNHPFSAEESQYMQHL 459

Query: 595 TQMMNKDLLD-SVIAYLKSQYSV 616
                 D  D ++I  LK +Y +
Sbjct: 460 VNNTKTDFFDKALIEELKKRYKI 482


>gi|149194584|ref|ZP_01871680.1| hypothetical protein CMTB2_01034 [Caminibacter mediatlanticus TB-2]
 gi|149135328|gb|EDM23808.1| hypothetical protein CMTB2_01034 [Caminibacter mediatlanticus TB-2]
          Length = 482

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 152/400 (38%), Gaps = 28/400 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++  +      F+ WG          +ST+  V   ++    + 
Sbjct: 1   MIEWMQTHRKWLVITIWIATIAFVGAGFVGWG---QFQFGKKTSTIAKVKDTEITIQDWQ 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           N++      ++Q++G  ++   A+ +GL K+ LD  +    L Q+ +D+GL      +  
Sbjct: 58  NAYNNLFDRVNQQLGGKLDEATAKKLGLQKEALDIAIQQGILRQYAKDLGLYVTDNDIAK 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           +I    +F  K N      + + L   G   K++ ++  K L    ++      ++P   
Sbjct: 118 KILE--VFKNKQN------YENYLKNTGQKAKDFENNLRKQLLVEKLLKYL--NLKPQKT 167

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            +       +   ++D  V+N  ++    D     + +++EK K+ Y +    +I     
Sbjct: 168 EIMTIASALYNADNLDIKVINKNNI--KVDVDENEIKKYWEKNKNKYLSQNQYKIMIETI 225

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
            +       ++S +EL+  Y +NK  Y + +   +      NQ + D     LKK     
Sbjct: 226 PLEG-----DVSEEELKKYYNENKLNYKNEKGEILSFEKAKNQVKIDYLAHKLKK----K 276

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +   +    S  +    +      +   D +  L   G +      +  Y+ A +    
Sbjct: 277 AIIAYKNLKNSKGNYKIITVNENNKLIPFDKMQILKNNG-YLKPFVYNQQYITAKLIEEL 335

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
               + F++VK  +        +S+K+ E   +  +    
Sbjct: 336 KPTPLPFEKVKNIVIKDYINEMSSKKLIEIANKALQNFKG 375


>gi|108563383|ref|YP_627699.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori HPAG1]
 gi|107837156|gb|ABF85025.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori HPAG1]
          Length = 487

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYNFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++G   +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKGNVQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|154148500|ref|YP_001406386.1| putative peptidyl-prolyl cis-trans isomerase D-like protein
           [Campylobacter hominis ATCC BAA-381]
 gi|153804509|gb|ABS51516.1| putative peptidyl-prolyl cis-trans isomerase D-like protein
           [Campylobacter hominis ATCC BAA-381]
          Length = 487

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 84/485 (17%), Positives = 178/485 (36%), Gaps = 66/485 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  ++K  ++ +  +++  +      F+ WG  D   + S S++V  VG   +    F 
Sbjct: 1   MINWMQKHKKSLIPTVWISTIAFVGAGFVGWGAYD--LNKSRSTSVAKVGDTAISIKEFQ 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           N + +    +          E+A+ + LD+  ++ L+  A L  F +D+G+ A    V  
Sbjct: 59  NKYSEVYNYLKSISDGKFTDEQAKKMHLDEMAINALIQDAILLNFAKDLGINASDEEVAR 118

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI  S  F   D KFS  ++ + +   G+++ EY     K++    +       ++P+  
Sbjct: 119 EIINSDNFK-TDGKFSKKLYENAMKNAGLSQNEYEKELKKVIILDKLKKAI--SIKPNAD 175

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++      F    V+  +++     +    ++  L  ++EK K  Y   +   +     
Sbjct: 176 DIEMLTASEFMQDKVEIAIVDQN--VSTITFNDDELKDFWEKNKSKYLTQKTYEMDAYFV 233

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----------NQKEADEA 286
           +   K     +    L+  +EKN++ Y +   + +                 N+ EA + 
Sbjct: 234 EPENK----NVDEKTLREFFEKNRDLYRNENDKLMSFEEANASVLNDYLTDFNKDEAIKK 289

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHG 344
           +  +KKGK F                   + E +      + I +L   K G+F   +  
Sbjct: 290 YLDVKKGKIF-------------------TNEKLVLNDNDEIIKNLQNMKIGEFNKPVKY 330

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
             G +I  ++ I     + F   KK   + +   K +E +K+  +               
Sbjct: 331 KNGNLITKLTKINEPQIMEFDAAKKLAGSDLFKAKKAEDLKKLAEN-------------- 376

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
               K+   D+  V  A ++     + +     + +  +F  D    K     L D   +
Sbjct: 377 -SLGKVAMKDIGFVSKASENTT-NGILSNEEFAKFIGSLFASD----KQDGYVLYDNKAL 430

Query: 465 WVQIK 469
             +I 
Sbjct: 431 IYKIT 435


>gi|15611978|ref|NP_223629.1| hypothetical protein jhp0911 [Helicobacter pylori J99]
 gi|4155485|gb|AAD06486.1| putative [Helicobacter pylori J99]
          Length = 487

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 167/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L  F  D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNFALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIRKTNVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E ++ +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYENHRKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D   Q   +   
Sbjct: 233 YFDASLEKTDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLNMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++G + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKGNAQNYTTQDFEKNNSPYTAEITQKLTAL-KPLEVLKPEPFKDGFIVVQLVS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QIKDELQNFDEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|317178673|dbj|BAJ56461.1| hypothetical protein HPF30_0364 [Helicobacter pylori F30]
          Length = 487

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 165/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL      V
Sbjct: 58  QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGTTKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEKYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|317182276|dbj|BAJ60060.1| hypothetical protein HPF57_0986 [Helicobacter pylori F57]
          Length = 487

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   +      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDI--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|322380902|ref|ZP_08054980.1| peptidylprolyl isomerase [Helicobacter suis HS5]
 gi|321146670|gb|EFX41492.1| peptidylprolyl isomerase [Helicobacter suis HS5]
          Length = 481

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 63/393 (16%), Positives = 144/393 (36%), Gaps = 19/393 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+  ++K  +  V  I++  +        G     FS++  + V  VGR  +        
Sbjct: 1   MISWMQKHKKYLVVTIWISTIAFVAAGMIGWGQYSFSMANGN-VAKVGRVLISEEELDRE 59

Query: 60  WKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++ L + SQ I     ++ +  +++GL+   L  L++ A L     D+GL      V  
Sbjct: 60  HRRLLDIYSQSIPNFKDLSEKEVKALGLEHNALTLLINQALLKNLALDLGLGVSGSEVIA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI +S  F  +   F   ++   L         + +     L    +  +F   + P   
Sbjct: 120 EIQKSTAFQNE-GHFDEALYKKILQENRYRPSAFEEGIKNALLLQKISALFPQAITPL-- 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              + + F +  R  D + +     P     +   L  ++ ++K+ Y+ P    ++    
Sbjct: 177 ---EEEAFLWPLRLQDQVRIEVLE-PKEVVVTQQALRDYYNQHKNTYKKPPSYTLAASHI 232

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
              + E       ++LQA YEKNK+ Y               Q +   +   L++  + +
Sbjct: 233 TDTDIE---PAKQEQLQAYYEKNKQVYTLQGKVQDFM-----QVKIKVSHDYLQEKARDL 284

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            L +      +     +     +P  +   +       G+         G+++  + + +
Sbjct: 285 ALQKYLALKNNTFKPATEVITKLPYPAEIATKIETMHPGEVLKPQKYKDGWLVVKLVSKQ 344

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
                SF+E K+++   +   +  + +K++  +
Sbjct: 345 TDQLQSFEEAKEEVRIAVVEQEQRKWLKQEASK 377



 Score = 43.1 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 84/261 (32%), Gaps = 43/261 (16%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
                F +VK  +++     KA +   + Y  L+       +                  
Sbjct: 260 GKVQDFMQVKIKVSHDYLQEKARDLALQKYLALKNNTFKPAT------------------ 301

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
                    + +  +PY  ++  ++        +          ++ V++      + + 
Sbjct: 302 ---------EVITKLPYPAEIATKIETMH--PGEVLKPQKYKDGWLVVKLVSKQTDQLQS 350

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
            EE   +V+      +  + +  +A++ +  +           K      L+ +    + 
Sbjct: 351 FEEAKEEVRIAVVEQEQRKWLKQEASKQLPHF-----------KGDDIGFLSLDFKGNIH 399

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKFISYLTQM 597
           +  +    + +  +F  P    + F I  G   V+++V +     PV     F   ++ +
Sbjct: 400 DLGEQSSKELVGYIFKHPY--KEGFVILKGPKAVLYRVYSQDFKHPVPNSKDFKQVVSNL 457

Query: 598 MNKDLLDSVIAYLKSQYSVTV 618
             +     ++A LK +Y V V
Sbjct: 458 KAQSFDAMLVAMLKQRYQVHV 478


>gi|317177768|dbj|BAJ55557.1| hypothetical protein HPF16_0960 [Helicobacter pylori F16]
          Length = 487

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLATL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QTKDELQNFDEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|109947212|ref|YP_664440.1| hypothetical protein Hac_0634 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714433|emb|CAJ99441.1| conserved hypothetical secreted protein [Helicobacter acinonychis
           str. Sheeba]
          Length = 487

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S++   VG+  +      
Sbjct: 1   MIEWMQNHRKYLVVTIWISAIAFIAAGMIGWG--QYSFSLD-SNSAAKVGKINISQEELA 57

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  E+ R++ L+K  L+ L++ A L     D+GL A    +
Sbjct: 58  QEYRRLKDAYAESIPNFKELTEEQIRAMHLEKSALNILINQALLRNLALDLGLGATKQEI 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQNNYRPKLFEESVERLLILQKISTLFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++L    V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILKPSDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD + ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDANLEKSDLK----ELEEYYNKNKASYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++G + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKGNTQNYTTQDFEENNSPYTTEITQKLTTL-KPLEILKPEPFKDGFIVVQLVS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F  VK  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QTKDELQNFDGVKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFAGTINE 405

Query: 415 L 415
           L
Sbjct: 406 L 406



 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 89/263 (33%), Gaps = 43/263 (16%)

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           K      F+ V++ + + + + KA+EK    Y  L++      +  +    E        
Sbjct: 260 KEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKGNTQNYTTQDF--EENNSPYTTE 317

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
           +          + +   P+K+                         ++ VQ+        
Sbjct: 318 ITQKLTTLKPLEILKPEPFKD------------------------GFIVVQLVSQTKDEL 353

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           +  + V + +K      KT   + + A + + ++  +GK+            ++ N    
Sbjct: 354 QNFDGVKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKS---------VGYVSPNFAGT 402

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
           ++  N+      I+ +F+      K   +  G   V++++           E+ +++  L
Sbjct: 403 INELNQEESAKFINTIFNRQE---KKGVVIIGDKVVLYQIIEQNFNHPFSTEESQYMDRL 459

Query: 595 TQMMNKDLLD-SVIAYLKSQYSV 616
                 D  D +++  LK +Y +
Sbjct: 460 VNNTKTDFFDKALMEELKKRYKI 482


>gi|217033935|ref|ZP_03439358.1| hypothetical protein HP9810_883g5 [Helicobacter pylori 98-10]
 gi|216943568|gb|EEC23016.1| hypothetical protein HP9810_883g5 [Helicobacter pylori 98-10]
          Length = 487

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 164/421 (38%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+   S    VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLDSGS-AAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPL 176

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
                    +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 177 EQS--SLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QTKDELQNFNEAKSTLKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|317011211|gb|ADU84958.1| hypothetical protein HPSA_04905 [Helicobacter pylori SouthAfrica7]
          Length = 487

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/465 (16%), Positives = 178/465 (38%), Gaps = 30/465 (6%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S++   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SNSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  E+ +++ L+K  L+ L++ A L     D+GL A    +
Sbjct: 58  QEYRRLKDAYAESIPDFKELTEEQIKAMHLEKSALNILINQALLRNLALDLGLGATKQEI 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   K+L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQNHYRPKHFEESVEKLLIVQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++L    V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILKPSDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD + ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDANLEKSDLK----ELEEYYNKNKASYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++G + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKGNTQNYTAQDFEENNSPYTTEITQKLTAL-KPLEILKPEPFKDGFIVVQLLS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLA---------LGTSMDEIS 405
                   F   K  +  ++   K    ++    ++L++F            G S+ E+S
Sbjct: 348 QIKDELQDFDGAKSALKTRLTQEKTLTALQTLAKEKLKDFKGKSVGYVSPNFGGSISELS 407

Query: 406 RREKIVSIDLPL--VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
           + E    I+      +  G    G +V      EQ     F  ++
Sbjct: 408 QEESAKFINALFNRQEKKGFVTIGDKVVLYQITEQNFNHQFSAEE 452



 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 89/263 (33%), Gaps = 43/263 (16%)

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           K      F+ V++ + + + + KA+EK    Y  L++      +  +    E        
Sbjct: 260 KEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKGNTQNYTAQDF--EENNSPYTTE 317

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
           +          + +   P+K+                         ++ VQ+   I    
Sbjct: 318 ITQKLTALKPLEILKPEPFKD------------------------GFIVVQLLSQIKDEL 353

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           +  +   + +K      KT   + + A + + ++  +GK+   +  N G S+   +Q   
Sbjct: 354 QDFDGAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGSISELSQ--- 408

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISYL 594
                       I+ +F+   +         G   V++++T          E+ +++  L
Sbjct: 409 ------EESAKFINALFNRQEKKGFVTI---GDKVVLYQITEQNFNHQFSAEESQYMERL 459

Query: 595 TQMMNKDLLD-SVIAYLKSQYSV 616
                 D  D +++  LK +Y +
Sbjct: 460 VNNTKTDFFDKALMEELKKRYKI 482


>gi|315452770|ref|YP_004073040.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter felis ATCC
           49179]
 gi|315131822|emb|CBY82450.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter felis ATCC
           49179]
          Length = 482

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 150/394 (38%), Gaps = 27/394 (6%)

Query: 5   IRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++K  +  V  I++     +    + WG     FS++  S V  VGR  +         K
Sbjct: 1   MQKHKKYLVVTIWISTIAFIAAGMIGWG--QYSFSMASGS-VAKVGRVLITSEELEMERK 57

Query: 62  QELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           + +   SQ I     ++ ++  ++GL+K  L  L++ A L     D+GL      +  EI
Sbjct: 58  RLVDAYSQSIPNFKDLDEKQIAAMGLEKTALRMLINQAYLKNLALDLGLGVSDAEIATEI 117

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            +S LF  KD  F  D++   L         + ++    L    V      G+ PS    
Sbjct: 118 QKSALFQ-KDGHFDVDLYKKVLQDNHYRPALFEENVKNALILQKV-----SGLFPSATTP 171

Query: 180 DQAKRFYFENRSVDYIVLN-NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            + + F +  +  D I +       A      + L  +++++K+ Y+ P      Y L  
Sbjct: 172 LEKEAFTYPLKIQDRISIKILEASHAPIQLEESALKAYYDQHKNTYKKP----TRYTLQT 227

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           +  K K   +    L+  Y+  K  Y   + +     +   +K  D       + +    
Sbjct: 228 LWIKPKTATLDQSILRKYYQDRKSNYTDAQGK-----LETFEKAKDRVIHDYNQAQAKEN 282

Query: 299 LAEEQGKSLSDISLGSFSKEY--IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             ++   +L   +L    + +  +P  +  D+     + G+    +    GY++  +   
Sbjct: 283 ALKQY-LALKRGNLNPKKESFTDLPYGTDIDTKIIAMQPGEVLKPLEYKEGYLVVKLVEK 341

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
                 SFQE K +I   ++     + +K++ ++
Sbjct: 342 SSGLLKSFQEAKSEIMATLQAEAQQKWLKQEAQK 375



 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 89/268 (33%), Gaps = 46/268 (17%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
               +F++ K  + +     +A E   + Y  L              +R  +        
Sbjct: 258 GKLETFEKAKDRVIHDYNQAQAKENALKQYLAL--------------KRGNLNPKKESFT 303

Query: 419 DFA-GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           D   G D+  K +A  P   ++L  +  K+               Y+ V++ E      +
Sbjct: 304 DLPYGTDIDTKIIAMQPG--EVLKPLEYKE--------------GYLVVKLVEKSSGLLK 347

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             +E  +++    +     + +  +A + V  +        DIG        T   ++  
Sbjct: 348 SFQEAKSEIMATLQAEAQQKWLKQEAQKQVKNFQGN-----DIGVLSPEFYGTIQGLDVK 402

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
           D          +  +F  P +             V++KV+          + +++ +   
Sbjct: 403 D------SRSLVDHIFKHPSKEGFVVF---KDKAVLYKVSQQDFQHKLGNESYLTEMATN 453

Query: 598 MNKDLLDS-VIAYLKSQYSVTVHDNLIQ 624
           +     D  ++A LK++Y +T++   +Q
Sbjct: 454 LKAQDFDRVLVAMLKNKYPITIYVKSLQ 481


>gi|322378577|ref|ZP_08053017.1| conserved hypothetical secreted protein [Helicobacter suis HS1]
 gi|321148985|gb|EFX43445.1| conserved hypothetical secreted protein [Helicobacter suis HS1]
          Length = 481

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/402 (16%), Positives = 141/402 (35%), Gaps = 37/402 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M+  ++K  +  V  I++  +        G     FS++  + V  VGR  +        
Sbjct: 1   MISWMQKHKKYLVVTIWISTIAFVAAGMIGWGQYSFSMANGN-VAKVGRVLISEEELDRE 59

Query: 60  WKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++ L + SQ I     ++ +  +++GL+   L  L++ A L     D+GL      V  
Sbjct: 60  HRRLLDIYSQSIPNFKDLSEKEVKALGLEHNALTLLINQALLKNLALDLGLGVSGSEVIA 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI +S  F  +   F   ++   L         + +     L    +  +F   + P   
Sbjct: 120 EIQKSTAFQNE-GHFDEALYKKILQENRYRPSAFEEGIKNALLLQKISALFPQAITPL-- 176

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              + + F +  R  D + +     P     +   L  ++ ++K+ Y+ P    ++    
Sbjct: 177 ---EEEAFLWPLRLQDQVRIEVLE-PKEVVVTQQALRDYYNQHKNTYKKPPSYTLAASHI 232

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT--------VEQLVFPNQKEADEAFQS 289
              + E       ++LQA YEKNK+ Y               V    F  +       + 
Sbjct: 233 TDTDIE---PAKQEQLQAYYEKNKQVYTLQGKVQDFMQVKIKVSHDYFQEKARDLALQKY 289

Query: 290 LK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           L  K   F    E   K      + +  +   P              G+         G+
Sbjct: 290 LALKNNTFKPATEVITKLPYPAEIATKIETMHP--------------GEVLKPQKYKDGW 335

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           ++  + + +     SF+E K+++   +   +  + +K++  +
Sbjct: 336 LVVKLVSKQTDQLQSFEEAKEEVRIAVVEQEQRKWLKQEASK 377



 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 84/261 (32%), Gaps = 43/261 (16%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
                F +VK  +++     KA +   + Y  L+       +                  
Sbjct: 260 GKVQDFMQVKIKVSHDYFQEKARDLALQKYLALKNNTFKPAT------------------ 301

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
                    + +  +PY  ++  ++        +          ++ V++      + + 
Sbjct: 302 ---------EVITKLPYPAEIATKIETMH--PGEVLKPQKYKDGWLVVKLVSKQTDQLQS 350

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
            EE   +V+      +  + +  +A++ +  +           K      L+ +    + 
Sbjct: 351 FEEAKEEVRIAVVEQEQRKWLKQEASKQLPHF-----------KGDDIGFLSLDFKGNIH 399

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKFISYLTQM 597
           +  +    + +  +F  P    + F I  G   V+++V +     PV     F   ++ +
Sbjct: 400 DLGEQSSKELVGYIFKHPY--KEGFVILKGPKAVLYRVYSQDFKHPVPNSKDFKQVVSNL 457

Query: 598 MNKDLLDSVIAYLKSQYSVTV 618
             +     ++A LK +Y V V
Sbjct: 458 KAQSFDAMLVAMLKQRYQVHV 478


>gi|208434878|ref|YP_002266544.1| peptidyl-prolylcis-transisomerase D [Helicobacter pylori G27]
 gi|208432807|gb|ACI27678.1| peptidyl-prolylcis-transisomerase D [Helicobacter pylori G27]
          Length = 505

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 165/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 19  MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 75

Query: 58  NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 76  QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 135

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 136 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP- 193

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 194 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 250

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 251 YFDAGLEKTDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 306

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++    +  +             +   + +L K  +         G+++  + +
Sbjct: 307 RSYIALKKANVQNYTTQDFEENNSPYTAEITQKLTAL-KPLEILKPEPFKDGFIVVQLIS 365

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 366 QIKDELQNFDEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 423

Query: 415 L 415
           L
Sbjct: 424 L 424


>gi|308063803|gb|ADO05690.1| conserved hypothetical secreted protein [Helicobacter pylori
           Sat464]
          Length = 487

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLVS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLTALQILAKEKLKDF--KGKSVGYVSPNFGGTINE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|210135166|ref|YP_002301605.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori P12]
 gi|210133134|gb|ACJ08125.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori P12]
          Length = 487

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 165/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++    +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYVALKKANVQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QIKDELQNFDEAKSTLKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTISE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|308184755|ref|YP_003928888.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
           [Helicobacter pylori SJM180]
 gi|308060675|gb|ADO02571.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
           [Helicobacter pylori SJM180]
          Length = 487

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   K+L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKTDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLVAL-KPLEVLKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|332673819|gb|AEE70636.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 83]
          Length = 487

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QTKDELQNFNEAKNALKTRLTQEKTLIALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|308062290|gb|ADO04178.1| conserved hypothetical secreted protein [Helicobacter pylori Cuz20]
          Length = 487

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QAKDELQNFNEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|317014385|gb|ADU81821.1| hypothetical protein HPGAM_05060 [Helicobacter pylori Gambia94/24]
          Length = 487

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 167/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L  F  D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNFALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   K+L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLIIQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E ++ +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDV--KISLNEEEMKKYYENHRKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKTDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLTAL-KPLEVLKPEPFKDGFIVVQLVS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QIKDELQNFDEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|207091647|ref|ZP_03239434.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 487

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   K+L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYVALKKANAKNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|261839760|gb|ACX99525.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori 52]
          Length = 487

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 165/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+   S    VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLDSGS-AAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLIALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|118497644|ref|YP_898694.1| hypothetical protein FTN_1053 [Francisella tularensis subsp.
           novicida U112]
 gi|195536345|ref|ZP_03079352.1| numod1 domain family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|118423550|gb|ABK89940.1| outer membrane protein of unknown function [Francisella novicida
           U112]
 gi|194372822|gb|EDX27533.1| numod1 domain family protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 477

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/501 (15%), Positives = 170/501 (33%), Gaps = 52/501 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59
           ML+      +     I ++ +   F+I G++    ++  S + V  VG  ++    F   
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +                  A +    + IL  ++    +    +   +      +   I
Sbjct: 61  AQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
             +P+F  KD KFS +     +A  G    +      K +  T +    V     ++   
Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAKNIQATIIPKTIVDTFIVTDYDT 162

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                 Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +   
Sbjct: 163 KLLNSIYSVNKYIDYLKVSPADFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK--- 295
                K +IS DE++A Y+ +KE +   +      +      + A E F    +      
Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIK 282

Query: 296 FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           + +L ++ GK+ +   +     +   + +               +  +       ++  V
Sbjct: 283 YTKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQV 336

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            N   +      ++K  I+      K+ +   +  + L   L  G  +D+  ++  I S 
Sbjct: 337 DNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS- 395

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
                   GKD     +             F  +   ++ H     +G     ++ +  P
Sbjct: 396 ---DSQAFGKDFNDYVI-------------FNSN---NQYHDYKTDNGDIYVYKVTKIEP 436

Query: 474 ARDRKLEEVLTDVKKDWKTVK 494
             D+   +V + V   +K  +
Sbjct: 437 ITDKT-TQVPSQVIDAYKQEE 456


>gi|254779571|ref|YP_003057677.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
           [Helicobacter pylori B38]
 gi|254001483|emb|CAX29488.1| Putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
           [Helicobacter pylori B38]
          Length = 487

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   K+L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYVALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTISE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|330975097|gb|EGH75163.1| periplasmic folding chaperone [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 393

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 149/406 (36%), Gaps = 37/406 (9%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEAD 284
           YI         K+++ +++LQA Y+K        E R    ++            + + +
Sbjct: 1   YIELKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIE 58

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPV 341
           E  Q L KG+ F  LA+E  +     + G    ++ + + D +  +++++L K    +  
Sbjct: 59  EIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVYDPAFEEALYALNKD-QVSQP 117

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +   FG+ +  +  ++     +F  +K  + N ++     +K  E  K+LE+     + +
Sbjct: 118 VRTDFGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDL 177

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALP 459
            + ++   +           G +        +     ++   F  +  +  +  +T+ L 
Sbjct: 178 SQPAQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGANSNTLELD 230

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
             + + V+ KE +  +   LE V + ++        +    +K   L+    ++GK    
Sbjct: 231 PETVVVVRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGL-RDGK-IPL 288

Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVF 574
             K  G        + R     +      +  +F  P    K  P       +  S+V+ 
Sbjct: 289 AAKQEGRDWKMMEAVTRS---QEGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIV 345

Query: 575 K---VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +   V  +      EK ++  +L     +    +  A L+S+  + 
Sbjct: 346 RLNGVNQAAAPTDAEKAQYRRFLASREGQQDFAAYRAQLESKAKIE 391


>gi|152992212|ref|YP_001357933.1| hypothetical protein SUN_0617 [Sulfurovum sp. NBC37-1]
 gi|151424073|dbj|BAF71576.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 491

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/404 (15%), Positives = 154/404 (38%), Gaps = 16/404 (3%)

Query: 1   MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  ++K ++  V  I+   +  +   F+ WG        S +  V  VG  ++  +   
Sbjct: 1   MISWMQKHNKYLVWTIWVATIAFIGAGFVGWG---TYSFGSKAGNVAKVGNIEIKQTQLN 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++       ++ +   ++ ++A+ +GL ++    +   A L  F +++G+      V  
Sbjct: 58  MAYSNLYNQYNEMMQGKLDEKKAKEMGLIQQAFSRIEVQAKLLNFAQEMGIVVSDKEVAR 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +A    F  KD  F+ D++ + L  + +  K +       ++    + +      P  L
Sbjct: 118 TLAGIKGFQ-KDGVFNKDIYNAYLRSQRLKAKTFEATLKDEITIQKTLALLHTDALP--L 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++           + Y VL N  V        A +  ++E  K+N+  P   ++S +  
Sbjct: 175 EVETVSSAMNIADKLMYKVLKNDDV--NISMDEAKIKAFWEIQKENFMTPRMYKLSIVW- 231

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                   +E++++E++A Y++N   Y     + +       +   D   +  KK  +  
Sbjct: 232 ---TATDGVEVTDEEIKAFYDENSFNYTDAAGKQLLFDEAKEEVTKDLKIKKSKKAAQKQ 288

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +A ++GK  +  S+     +      L D++      G+          Y    +  + 
Sbjct: 289 YIAFKKGKLENPESMTLPVNDSTLSKELWDAVIE-KNSGEIVKPKVVGDKYATVKIEAVI 347

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
                +F++ K+++     +    E + +  ++  E L    +M
Sbjct: 348 EPKAKTFEDAKEEVTKLYTLQAQKEALLKLAEKTLETLDKSNAM 391



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 60/160 (37%), Gaps = 13/160 (8%)

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
             Y  V+I+  I  + +  E+   +V K +      E +   A + +    K      D 
Sbjct: 336 DKYATVKIEAVIEPKAKTFEDAKEEVTKLYTLQAQKEALLKLAEKTLETLDKSNAMISDF 395

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
                 +L   + +  ++++        + ++F+  ++      + +    VV+K+ + K
Sbjct: 396 -----VTLEKNDNLKSLNSQE---SLQFLQKLFT-SLKEKGIISVADK--VVVYKIMDQK 444

Query: 581 VGPVQE-KDKFISYLTQMMNKDLLDS-VIAYLKSQYSVTV 618
             P  + +  F+      M     ++ +I  L ++Y   V
Sbjct: 445 FLPADQNRTDFVKQSVNQMKSRTFEANLIKMLDAKYPTEV 484


>gi|217032656|ref|ZP_03438143.1| hypothetical protein HPB128_19g17 [Helicobacter pylori B128]
 gi|298736064|ref|YP_003728589.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori B8]
 gi|216945666|gb|EEC24294.1| hypothetical protein HPB128_19g17 [Helicobacter pylori B128]
 gi|298355253|emb|CBI66125.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori B8]
          Length = 487

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLTAL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTISE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|317009631|gb|ADU80211.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori India7]
          Length = 487

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTRFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYVALKKTNAQNYTTQDFEENNSPYTAEITQKLATL-KSLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QTKDELQNFDEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTISE 405

Query: 415 L 415
           L
Sbjct: 406 L 406



 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 93/263 (35%), Gaps = 43/263 (16%)

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           K      F+ V++ + + + + KA+EK    Y  L++  A   +  +        + ++ 
Sbjct: 260 KEGKLQDFKSVQEQVKHDLSMQKANEKALRSYVALKKTNAQNYTTQDFEENNSPYTAEIT 319

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
                 K +  + +   P+K+                         ++ VQ+        
Sbjct: 320 QKLATLKSL--EILKPEPFKD------------------------GFIVVQLISQTKDEL 353

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           +  +E  + +K      KT   + + A + + ++  +GK+   +  N G ++   NQ   
Sbjct: 354 QNFDEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTISELNQ--- 408

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV--QEKDKFISYL 594
                       I+ +F+   +         G   V++++T          E+ +++  L
Sbjct: 409 ------EESAKFINTLFNRQEKKGFIAI---GDKVVLYQITEQNFNHSFSAEESQYVQRL 459

Query: 595 TQMMNKDLLD-SVIAYLKSQYSV 616
                 D  D ++I  LK +Y +
Sbjct: 460 VNNTKTDFFDKALIEELKKRYKI 482


>gi|317180180|dbj|BAJ57966.1| hypothetical protein HPF32_0384 [Helicobacter pylori F32]
          Length = 487

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 161/420 (38%), Gaps = 19/420 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+   S    VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLDSGS-AAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPNFKELTEDQIKAIHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   K+L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISTLFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYVALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
                  +F E K  +  ++   K    ++   K  +     G S+  +S        +L
Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLTALQTLAKE-KLKNFKGKSVGYVSPNFGGTINEL 406


>gi|134302065|ref|YP_001122034.1| hypothetical protein FTW_1101 [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049842|gb|ABO46913.1| hypothetical protein FTW_1101 [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 476

 Score =  180 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 76/500 (15%), Positives = 169/500 (33%), Gaps = 51/500 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+      +     I ++ +   F+I G++    ++   + V  VG  ++    F    
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSRAYVAKVGDNEISSQQFQQYA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +                  A +    + IL  ++    +    +   +      +   I 
Sbjct: 61  QS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIF 103

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P+F  KD KFS +     +A  G    +      + +  T +    V     ++    
Sbjct: 104 TNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDTK 162

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +    
Sbjct: 163 LLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKD 222

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK---F 296
               K +IS DE++A Y+ +KE +   +      +      + A E F    +      +
Sbjct: 223 NFVLKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIKY 282

Query: 297 IQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            +L ++ GK+ +   +     +   + +               +  +       ++  V 
Sbjct: 283 TKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQVD 336

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           N   +      ++K  I+      K+ +   +  + L   L  G  +D+  ++  I S  
Sbjct: 337 NSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS-- 394

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
                  GKD     +             F  +   ++ H     +G     ++ +  P 
Sbjct: 395 --DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDNGDIYIYKVTKIEPI 436

Query: 475 RDRKLEEVLTDVKKDWKTVK 494
            D+   +V + V   +K  +
Sbjct: 437 TDKT-TQVPSQVIDAYKQEE 455


>gi|317012785|gb|ADU83393.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
           [Helicobacter pylori Lithuania75]
          Length = 487

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYNFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDRLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYVALKKANAQNYTTQDFEENNSPYTAEITQKLATL-KPLEILKPEPFKDGFIVVQLVS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QTKDELQNFNEAKSTLKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|261838345|gb|ACX98111.1| pedidyl-prolyl cis-trans isomerase D [Helicobacter pylori 51]
          Length = 487

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIKKTSVFQ-KDGIFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNKEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QTKDELQNFNEAKNALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|15645592|ref|NP_207768.1| hypothetical protein HP0977 [Helicobacter pylori 26695]
 gi|2314119|gb|AAD08023.1| conserved hypothetical secreted protein [Helicobacter pylori 26695]
          Length = 487

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F  +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++  + +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLTAL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 405

Query: 415 L 415
           L
Sbjct: 406 L 406


>gi|213420304|ref|ZP_03353370.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 205

 Score =  179 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 88/207 (42%), Gaps = 3/207 (1%)

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
            ++ L     +V   I  +P F   D KF ++ + + + + G+   +Y       L+   
Sbjct: 1   RELKLGISDEQVKQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQ 59

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++    G         D+      + R V   V++   + A    ++  ++ ++++ K  
Sbjct: 60  LINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVR 119

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           +  PE  R+SYI  D      +  +S+ ++QA Y+++ +++  PE      +    + +A
Sbjct: 120 FMTPEQFRVSYIKLDAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDA 177

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDI 310
                +L KG+ F  LA+E+   +   
Sbjct: 178 KAVLDALNKGEDFATLAKEKSTDIISA 204


>gi|224824985|ref|ZP_03698091.1| putative peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
 gi|224602656|gb|EEG08833.1| putative peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
          Length = 277

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 98/270 (36%), Gaps = 20/270 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M E ++     +V K+ L  + + F+ +G+     +V     +  VG  K+       + 
Sbjct: 1   MFEFVQNNK--FVIKVILGAIALTFVGFGVGSYTTAVD-EPYLAKVGNVKIHKQDLDRAL 57

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           + +                       + +L+NL+    L       GL     ++   IA
Sbjct: 58  EGQ----------------PADAATRQAVLENLIRQQLLLADAHAAGLTVSDAQLRKAIA 101

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P    ++  FS + +   LA    +   + +   + +     +   +G       ++D
Sbjct: 102 SIPALQ-ENGAFSAERYKQFLAGRYQSSVAFEELVKRDILLQGQLTSLLGSQIVPRTVVD 160

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +      E+R V  +VL      A      A L  +++     +R PE  ++ Y++    
Sbjct: 161 RMAGVLGESREVRALVLKPEAFAAEVKTDAAALKAFYDASLKRFRTPEAVKLDYVVLSQD 220

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
                  +++ E+++ Y ++K  + S E R
Sbjct: 221 ALAAAQAVTDQEVESYYNEHKADFGSEERR 250


>gi|308183127|ref|YP_003927254.1| conserved hypothetical secreted protein [Helicobacter pylori
           PeCan4]
 gi|308065312|gb|ADO07204.1| conserved hypothetical secreted protein [Helicobacter pylori
           PeCan4]
          Length = 487

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++     +    + WG     FS+  S +   VG+ K+      
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57

Query: 58  NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +++     ++ I     +  ++ +++ L+K  LD+L++ A L     D+GL A    V
Sbjct: 58  QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             EI ++ +F  KD  F+ +++ + L +     K + +   ++L    +  +F     P 
Sbjct: 118 AKEIRKTSVFQ-KDGVFNEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            L       +      +D ++LN   V      +   + +++E +K +++ P   +   +
Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPISFKTRSL 232

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
            FD   ++  ++    EL+  Y KNK  Y   E +  +      Q + D + Q   +   
Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              +A ++    +  +             +   + +L K  +         G+++  + +
Sbjct: 289 RSYIALKKANVQNYTTQDFEENNSPYTAEITQKLTAL-KPLEILKPEPFKDGFIVVQLIS 347

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414
                  +F E K  +  ++   K    ++    ++L++F   G S+  +S        +
Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405

Query: 415 L 415
           L
Sbjct: 406 L 406



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 93/263 (35%), Gaps = 43/263 (16%)

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           K      F+ V++ + + + + KA+EK    Y  L++      +  +        + ++ 
Sbjct: 260 KEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANVQNYTTQDFEENNSPYTAEIT 319

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
                      +++ A+   E L    F                  ++ VQ+        
Sbjct: 320 -----------QKLTALKPLEILKPEPF---------------KDGFIVVQLISQTKDEL 353

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           +   E  + +K      KT   + + A + + ++  +GK+   +  N G ++        
Sbjct: 354 QNFNEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTI-------- 403

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV--QEKDKFISYL 594
            +  N+      I+ +F+   E      I N    V++++T          E+ +++  L
Sbjct: 404 -NELNQEESAKFINALFNRQ-EKKGFIAINNK--IVLYQITEQNFNHSFSAEESQYMQRL 459

Query: 595 TQMMNKDLLD-SVIAYLKSQYSV 616
                 D  D ++I  LK +Y +
Sbjct: 460 VNNTKTDFFDKALIEELKKRYKI 482


>gi|328676007|gb|AEB28682.1| Peptidyl-prolyl cis-trans isomerase ppiD [Francisella cf. novicida
           3523]
          Length = 477

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/502 (15%), Positives = 169/502 (33%), Gaps = 54/502 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59
           ML+      +     I ++ +   F+I G++    ++  S + V  VG  ++    F   
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +     I                   + IL  ++    +    +   +      +   I
Sbjct: 61  AQSATTDIQ-----------------KRAILSQMIDQYLILADAQRHNIVVSKLALQSAI 103

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
             +P+F  KD KFS D     +A  G +         T+ +  T +    V     ++  
Sbjct: 104 FTNPMFFDKDGKFSADKLKQVVAYLGGM--DRLEQMLTQNIQATIIPKTIVDTSLVTDYD 161

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                  Y  N+ +DY  ++     +   PS   L  +++ +K+ Y  P  K ISY +  
Sbjct: 162 TKSLASIYSVNKYIDYFKVSPADFKSQIKPSQQDLQSYYDVHKNEYITPAQKTISYFIIT 221

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK-- 295
                 K +I  DE+++ YE +KE +   +  T   +      + A E F    +     
Sbjct: 222 KDNFVPKNKIGEDEIKSYYEAHKELFKDFDDNTKSTIQKIIQNRHALEQFNEYTQNVDSI 281

Query: 296 -FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            + +L ++ GK+ +   +     +   + +               ++ +       ++  
Sbjct: 282 KYAKLEKQLGKAKTATIVDNNDMTISNVANSQF------FTNSDKYSSITIADNQLLVYQ 335

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V N   +      ++K  I+      K+ +   +  + L   L  G  +D   +  K  +
Sbjct: 336 VDNSTKATQQKLADIKDTISKAYIEQKSQQLALQQAQNLLNDLTSGKKID---KSFKQAT 392

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
           I++    F                    + +F  +   ++ H     +G     ++ +  
Sbjct: 393 INIDSQAFDKDFNN--------------YVMFNSN---NQYHDYKAANGDIYIYKVTKVE 435

Query: 473 PARDRKLEEVLTDVKKDWKTVK 494
           P  D+    V + V   +K  +
Sbjct: 436 PITDKT-TRVPSQVIDAYKQEE 456


>gi|254374458|ref|ZP_04989940.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151572178|gb|EDN37832.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 477

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/501 (15%), Positives = 170/501 (33%), Gaps = 52/501 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59
           ML+      +     I ++ +   F+I G++    ++  S + V  VG  ++    F   
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +                  A +    + IL  ++    +    +   +      +   I
Sbjct: 61  AQS-----------------ATTEEQKRAILSQMIDQYLILVDAQRHDIVVSKLALQSAI 103

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
             +P+F  KD KFS +     +A  G    +      + +  T +    V     ++   
Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDT 162

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                 Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +   
Sbjct: 163 KLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK--- 295
                K +IS DE++A Y+ +KE +   +      +      + A E F    +      
Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIK 282

Query: 296 FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           + +L ++ GK+ +   +     +   + +               +  +       ++  V
Sbjct: 283 YTKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQV 336

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            N   +      ++K  I+      K+ +   +  + L   L  G  +D+  ++  I S 
Sbjct: 337 DNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS- 395

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
                   GKD     +             F  +   ++ H     +G     ++ +  P
Sbjct: 396 ---DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDNGDIYVYKVTKIEP 436

Query: 474 ARDRKLEEVLTDVKKDWKTVK 494
             D+   +V + V   +K  +
Sbjct: 437 ITDKT-TQVPSQVIDAYKQEE 456


>gi|332678352|gb|AEE87481.1| Peptidyl-prolyl cis-trans isomerase ppiD [Francisella cf. novicida
           Fx1]
          Length = 477

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/502 (15%), Positives = 172/502 (34%), Gaps = 54/502 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59
           ML+      +     I ++ +   F+I G++    ++  S + V  VG  ++    F   
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +                  A +    + IL  ++    +    +   +      +   I
Sbjct: 61  AQS-----------------ATTEEQKRAILSQMIDQYLILVDAQRHDIVVSKLALQSAI 103

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
             +P+F  KD KFS +     +A  G +   +      + +  T +    V     ++  
Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLGGM--DKLEQILAQNIQATIIPKTIVDTSIVTDYD 161

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                  Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +  
Sbjct: 162 TKLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIIT 221

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK-- 295
                 K +IS DE++A Y+ +KE +   +      +      + A E F    +     
Sbjct: 222 KDNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSI 281

Query: 296 -FIQLAEEQG--KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            + +L ++ G  K+ + +   + +   + +               +  +       ++  
Sbjct: 282 KYTKLEKQFGKVKTATIVDNNNTTISNVANSQF------FINSDKYATITIADNKLLVYQ 335

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V N   +      ++K  I+      K+ +   +  + L   L  G  +D+  ++  I S
Sbjct: 336 VDNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS 395

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
                    GKD     +             F  +   ++ H     +G     ++ +  
Sbjct: 396 ----DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDNGDIYVYKVTKIE 435

Query: 473 PARDRKLEEVLTDVKKDWKTVK 494
           P  D+   +V + V   +K  +
Sbjct: 436 PITDKT-TQVPSQVIDAYKQEE 456


>gi|148284059|ref|YP_001248149.1| hypothetical protein OTBS_0138 [Orientia tsutsugamushi str.
           Boryong]
 gi|146739498|emb|CAM79204.1| hypothetical protein OTBS_0138 [Orientia tsutsugamushi str.
           Boryong]
          Length = 485

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 162/426 (38%), Gaps = 30/426 (7%)

Query: 34  LFSVSGSSTVVSVGRQK-VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92
             S   SS +V+  + K +  S F+ +    L +   +I    +        + + +L N
Sbjct: 2   FHSNDNSSDIVTFTKAKNITKSEFMQA----LKLAMHQIPQNSDQNILTQNNIRELVLSN 57

Query: 93  LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
           L+S   L+Q   +  L      V+  I  S  F+   N F  ++F + L    I+E +Y 
Sbjct: 58  LISTHVLEQLAHEYNLTLSTAAVFKFIQNSKAFNNNQN-FDINIFRNILKNLHISEPQYF 116

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD---PS 209
           D  TK      ++  F+      ++L         E R++  + ++ ++    +    PS
Sbjct: 117 DQATKQQLSEILLHQFINNNYVPSILTKNIINLSAETRNIQLVSIDLQNEQLQSTLDSPS 176

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS--- 266
           +  L +++   +  +  PE + ISYI+ D +  + K+ + N  L+  Y  + +++     
Sbjct: 177 SEQLQEFYNNNQSKFEKPEQRHISYIVLDNNYFKNKVIVDNKSLEEFYRTHSDQFSEKNS 236

Query: 267 -----PEIRT--VEQLVFPN-QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
                 E+R   V   V              +  G    ++A+     L  ++L + +K+
Sbjct: 237 FTKNIAEVREKYVNHQVDKLFNDTITLLEDEVASGSNSSEIAKMLNVKL--LTLNNVTKQ 294

Query: 319 YIPD----VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
            + +     ++ D+IF+L +     P+   S   +I  +  I PS    F  V   +  +
Sbjct: 295 KLANNKILSNVTDAIFALEEHETSYPLDVSSKMLIIVSIQKIIPSAVEKFDNVLNQVQEE 354

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
            +     E+  E   + ++     T+ D      K   + +       +           
Sbjct: 355 WKKNTIRERNIELLNKFQQT----TNADNFIADAKKYKLTVKPNVIVTRLNNNTIELPKE 410

Query: 435 YKEQLL 440
           + EQLL
Sbjct: 411 FVEQLL 416


>gi|115314710|ref|YP_763433.1| hypothetical protein FTH_0881 [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502314|ref|YP_001428379.1| hypothetical protein FTA_0947 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254369242|ref|ZP_04985254.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953593|ref|ZP_06558214.1| peptidyl-prolyl cis-trans isomerase D [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313094|ref|ZP_06803784.1| peptidyl-prolyl cis-trans isomerase D [Francisella tularensis
           subsp. holarctica URFT1]
 gi|115129609|gb|ABI82796.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156252917|gb|ABU61423.1| hypothetical protein FTA_0947 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122192|gb|EDO66332.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 477

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/501 (15%), Positives = 170/501 (33%), Gaps = 52/501 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59
           ML+      +     I ++ +   F+I G++    ++  S + V  VG  ++    F   
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +                  A +    + IL  ++    +    +   +      +   I
Sbjct: 61  VQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
             +P+F  KD KFS +     +A  G    +      + +  T +    V     ++   
Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDT 162

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                 Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +   
Sbjct: 163 KLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK--- 295
                K +IS DE++A Y+ +KE +   +      +      + A E F    +      
Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRYALEQFNEYTQNIDSIK 282

Query: 296 FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           + +L ++ GK+ +   +     +   + +               +  +       ++  V
Sbjct: 283 YTKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQV 336

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            N   +      ++K  I+      K+ +   +  + L   L  G  +D+  ++  I S 
Sbjct: 337 DNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS- 395

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
                   GKD     +             F  +   ++ H     +G     ++ +  P
Sbjct: 396 ---DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDNGDIYIYKVTKIEP 436

Query: 474 ARDRKLEEVLTDVKKDWKTVK 494
             D+   +V + V   +K  +
Sbjct: 437 ITDKT-TQVPSQVIDAYKQEE 456


>gi|254373010|ref|ZP_04988499.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570737|gb|EDN36391.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 477

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/501 (15%), Positives = 170/501 (33%), Gaps = 52/501 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59
           ML+      +     I ++ +   F+I G++    ++  S + V  VG  ++    F+  
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFLQY 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +                  A +    + IL  ++    +    +   +      +   I
Sbjct: 61  AQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
             +P+F  KD KFS +     +A  G    +      + +  T +    V     ++   
Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDT 162

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                 Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +   
Sbjct: 163 KLLNSIYSVNKYIDYLKVSPADFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK--- 295
                K +IS DE++A Y+ +KE +   +      +      + A E F    +      
Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIK 282

Query: 296 FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           + +L ++ GK+ +   +     +   + +               +  +       ++  V
Sbjct: 283 YTKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQV 336

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            N   +      ++K  I+      K+ +   +  + L   L  G  +D   +  K   I
Sbjct: 337 DNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKID---KSFKQAII 393

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
           +       GKD     +             F  +   ++ H     +G     ++ +  P
Sbjct: 394 NSDS-QAFGKDFNDYVM-------------FNSN---NQYHDYKTDNGDIYVYKVTKIEP 436

Query: 474 ARDRKLEEVLTDVKKDWKTVK 494
             D+   +V + V   +K  +
Sbjct: 437 ITDKT-TQVPSQVIDAYKQEE 456


>gi|312131757|ref|YP_003999097.1| ppic-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
           byssophila DSM 17132]
 gi|311908303|gb|ADQ18744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
           byssophila DSM 17132]
          Length = 709

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 101/723 (13%), Positives = 222/723 (30%), Gaps = 127/723 (17%)

Query: 4   IIRKASRTWVAKIFLVVLFVPFLIWG--LSDALFSV--SGSSTVVSVGRQKVPFSSFINS 59
            IR+ S   V  I + ++   F++ G  ++ +        S+ V  +    + F  F N 
Sbjct: 6   KIREKSGVAVVVIAIALIL--FIVGGDFVAGSKGGGLFGNSNAVGEINGTTIDFQQFANL 63

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            + +       +G   N +      + +++ + L+      +  ED+G+      +   +
Sbjct: 64  VEGQRMQYEASVGRSANEQE--QAQIREQVWEKLIFEHVYSEAFEDLGITVSDEELREMV 121

Query: 120 AR--------SPLFHGKDNKFS---HDVFVSRLAREGINEKE------YIDHYTKMLSRT 162
                        F  ++  F    H  F++  A   +  ++      +      +  R 
Sbjct: 122 QGPKNIHPFVKQQFSDQNGNFDATTHANFIAAYANNSMPAEQRIMWDNFKRELRDVRKRE 181

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYK 221
               +       +               S  Y+ +    V       S+  +  +F K+K
Sbjct: 182 KYANLLNSSSYITKAEAKAEYYNTTNKASGKYLYVPFYSVADSTVKVSDGEIKSYFSKHK 241

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQA------------EYEKNKEKYFSPEI 269
           D++ A + + + Y+ F +   ++      ++L+              Y        +P +
Sbjct: 242 DDFNAYDSRSLVYVTFSLLPTKEDSVALMNDLRELAKGLAAAPDPVAYANENSDIKTPGV 301

Query: 270 R-----------------------------------------------TVEQLVF----- 277
           R                                                   ++F     
Sbjct: 302 REAGDLSPELKSTLASTIEGGLVGPFKEGTAYSIHKFLGTEVDEHYTARASHILFRADST 361

Query: 278 -------PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLAD 327
                    +K+A E     K G  F  LA + G          LGSF  +     +  D
Sbjct: 362 MTQEQRDEAKKKALEILAQAKSGMDFAFLARQFGSDGTAQQGGDLGSFKNDGTMVKAFED 421

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           +IFS +  G    ++   FGY I  V+  K +       + K++       + S  V + 
Sbjct: 422 AIFSFSGTGVLPNLVTTDFGYHIVKVTEPKSNLKYKLATITKELH---VGDEGSNLVFQK 478

Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
              L         ++E ++++      + L +          V  +    +L+   +GKD
Sbjct: 479 ASELMNSAKSIKDLEEAAKKDN----SIVLFNAENVQPGATVVNTLRNARELVQWAYGKD 534

Query: 448 DPLSK--DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
             + K  D    L D  Y+   +K +    D K E+    +    +  K AE        
Sbjct: 535 AKVGKVADRVFVLEDN-YVVAALKSAADKNDPKAEDFKDLIAARIRNEKKAE-------- 585

Query: 506 LVLEYSKEGK-NFRDIGKNLGA----SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           L+ +   +GK +F +I K  GA      ++   +      +  F    + ++F       
Sbjct: 586 LITKKLGDGKGSFEEIAKKYGAGALIEEVSEITLQTGMLNSAGFDPVAVGKLFGLKPNTR 645

Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY--LKSQYSVTV 618
                 +   +++          + +   + + + Q      L  +I    L++   +  
Sbjct: 646 SKVFTGDSGVFIMENTAKVVAPEIADYSAYKAQIQQRSFG--LGGMIGEEILRANAKIED 703

Query: 619 HDN 621
           +  
Sbjct: 704 NRA 706


>gi|213024001|ref|ZP_03338448.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 215

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 94/216 (43%), Gaps = 5/216 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  +P F   D KF ++ + + + + G+   +Y       L+   ++    G       
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKG 178

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
             D+      + R V   V++   + A    ++  +
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEV 214


>gi|300770131|ref|ZP_07080010.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762607|gb|EFK59424.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 703

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 107/718 (14%), Positives = 238/718 (33%), Gaps = 121/718 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           +  +R  +   +  +   +  V FL+  +  + A F  S  + V SV  + + +  F   
Sbjct: 4   MTFLRNRA-GLIVTVI-GIAIVAFLLGDVVRTGAPFWASSQNQVGSVNGESISYPDFNVQ 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q   M  Q++G    + + ++  + +++ +  V+   L Q +E IGL      +   +
Sbjct: 62  VEQASAMFQQQMGGGSLTPQMKNYAV-QQVWNQFVTKEILKQEVEKIGLSVGKDELNALV 120

Query: 120 AR-SPLFH-------GKDNKFSHDV---FVSRLAREGINEKE-----YIDHYTKMLSRTD 163
              +P +         +  +F       F+SRL  +G  E +      ++        T 
Sbjct: 121 NGPNPSYQIVQAFTNPQTGQFDKAQLNMFLSRLKSDGTPEMQQQWEMLLEGVRDERMGTK 180

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKD 222
              +    +  ++L  +       +  +  Y++L+   +  A    ++A   +++++ K+
Sbjct: 181 YTNLLNNSIYVTSLEANDDYIQRNKLANFKYVLLDYSSIKDADIKLTDADYKEYYDENKN 240

Query: 223 NYR---------------APEYKRISYILFDVHEKEKKIEIS---------NDELQAEYE 258
            ++                P  +  +  L  V + +  +  S         N + +  Y 
Sbjct: 241 AFKNPEETRSIEYVLVDGRPNQRDTAATLAVVQKLKADLAASTNDSLFASVNSDTKYPYT 300

Query: 259 ------------------------------------KNKEKYFSPEIRTVEQLVF----- 277
                                               K K+  FSP+      ++      
Sbjct: 301 YLKKGQVSPALDSVLFNAPVGATVGPFLSNGVYEIAKIKDATFSPDSVKASHILLNPTAE 360

Query: 278 ----PNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSI 329
                 + +AD     + KG+ F  LA    +++G   +   LG+F +  +       ++
Sbjct: 361 GGVDKAKAKADSIKNLIAKGEAFGPLAIQFSQDEGSKANGGDLGTFGRGRMV-PEFDKAV 419

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           F   K GD   +++  FG  I  +     +  V    VK  I ++  I+   E +   Y 
Sbjct: 420 FE-GKTGDVL-IVNSQFGVHIVKIEKQIGNSKV----VKAAIVDK-TISSGKETIDAAYA 472

Query: 390 RLEEFLA--LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
           +   F +     +   ++ ++ +       V      + G EV       +LL   F   
Sbjct: 473 KANSFFSALDKDNFKAVATKQGLKDATAKRVTAMDNTLDGNEVP-----RELLRWAFEAK 527

Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
                D      D +++  ++ +  P     LE +  D++   + +  A ++  KA   +
Sbjct: 528 KGDVTDKVYET-DHTFIVARLADIQPKGILPLEAIKADIETPVRNLVKARQLKEKAENAL 586

Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDN--ENKFFGYDGISQVFSGPVEMVKCFPI 565
               K   +   +G+ LG S +    I   +            +  VF           I
Sbjct: 587 ----KGASSIDQVGQKLGKSPIQVENIVLANPVIPGVALENAVVGTVFGLQPN-KPSTAI 641

Query: 566 ENGLSYVVFKV---TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           +      V +V    N K     E       L     +   +S+   L+ +  +  + 
Sbjct: 642 KGNQGVYVVQVNGFVNPKNQVATEIKAQQKQLIASKAQRSWNSIFKALQDKAKIDDNR 699


>gi|227538586|ref|ZP_03968635.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241505|gb|EEI91520.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 703

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 108/718 (15%), Positives = 238/718 (33%), Gaps = 121/718 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           +  +R  +   +  +   +  V FL+  +  + A F  S  + V SV  + + +  F   
Sbjct: 4   MTFLRNRA-GLIVTVI-GIAIVAFLLGDVVRTGAPFWASTQNQVGSVNGESISYPDFNVQ 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q   M  Q++G    + + ++  + +++ +  V+   L Q +E IGL      +   +
Sbjct: 62  VEQASAMFQQQMGGGSLTPQMKNYAV-QQVWNQFVTKEILKQEVEKIGLSVGKDELNALV 120

Query: 120 AR-SPLFH-------GKDNKFSHDV---FVSRLAREGINEKE-----YIDHYTKMLSRTD 163
              +P +         +  +F       F+SRL  EG  E +      ++        T 
Sbjct: 121 NGPNPSYQIVQAFTNPQTGQFDKAQLNMFLSRLKSEGTPEMQQQWEMLLEGVRDERMGTK 180

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKD 222
              +    +  ++L  +       +  +  Y++L+   +  A    ++A   +++++ K+
Sbjct: 181 YTNLLNNSIYVTSLEANDDYIQRNKLANFKYVLLDYSSIKDADIKLTDADYKEYYDENKN 240

Query: 223 NYR---------------APEYKRISYILFDVHEKEKKIEIS---------NDELQAEYE 258
            ++                P  +  +  L  V + +  +  S         N + +  Y 
Sbjct: 241 AFKNPEETRAIEYVLVDGRPNQRDTAATLAVVQKLKADLAASTNDSLFASVNSDTKYPYT 300

Query: 259 ------------------------------------KNKEKYFSPEIRTVEQLVF----- 277
                                               K K+  FSP+      ++      
Sbjct: 301 YLKKGQVSPALDSVLFNAPVGATVGPFLSNGVYEIAKIKDATFSPDSVKASHILLNPTAE 360

Query: 278 ----PNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSI 329
                 + +AD     + KG+ F  LA    +++G   +   LG+F +  +       ++
Sbjct: 361 GGVDKAKAKADSIKNLIAKGEAFGPLAIQFSQDEGSKANGGDLGTFGRGRMV-PEFDKAV 419

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           F   K GD   +++  FG  I  +     +  V    VK  I ++  I+   E +   Y 
Sbjct: 420 FE-GKTGDVL-IVNSQFGVHIVKIEKQVGNSKV----VKAAIVDK-AISSGKETIDAAYA 472

Query: 390 RLEEFLA--LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
           +   F +     +   ++ ++ +       V      + G EV       +LL   F   
Sbjct: 473 KANSFFSALDKDNFKAVATKQGLKDATAKRVTAMDNTLDGNEVP-----RELLRWAFEAK 527

Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
                D      D +++  ++ +  P     LE +  D++   + +  A ++  KA   +
Sbjct: 528 KGDVTDKVYET-DHTFIVARLADIQPKGILPLEAIKADIETPVRNLVKARQLKEKAENAL 586

Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDN--ENKFFGYDGISQVFSGPVEMVKCFPI 565
               K   +   +G+ LG S +    I   +            +  VF           I
Sbjct: 587 ----KGASSIDQVGQKLGKSPIQVENIVLANPVIPGVALENAVVGTVFGLQPN-KPSTAI 641

Query: 566 ENGLSYVVFKV---TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           +      V +V    N K     E       L     +   +S+   L+ +  +  + 
Sbjct: 642 KGNQGVYVVQVNGFVNPKNQVATEIKAQQKQLIASKAQRSWNSIFKALQDKAKIDDNR 699


>gi|208779446|ref|ZP_03246792.1| numod1 domain family protein [Francisella novicida FTG]
 gi|208745246|gb|EDZ91544.1| numod1 domain family protein [Francisella novicida FTG]
          Length = 477

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 76/501 (15%), Positives = 169/501 (33%), Gaps = 52/501 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59
           ML+      +     I ++ +   F+I G++    ++  S + V  VG  ++    F   
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +                  A +    + IL  ++    +    +   +      +   I
Sbjct: 61  AQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
             + +F  KD KFS +     +A  G    +      + +  T +    V     ++   
Sbjct: 104 FTNSMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTFIVTDYDT 162

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                 Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +   
Sbjct: 163 KLLNSIYSVNKYIDYLKVSPADFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK--- 295
                K +IS DE++A Y+ +KE +   +      +      + A E F    +      
Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIK 282

Query: 296 FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           + +L ++ GK+ +   +     +   + +               +  +       ++  V
Sbjct: 283 YTKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQV 336

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            N   +      ++K  I+      K+ +   +  + L   L  G  +D+  ++  I S 
Sbjct: 337 DNSIKATQQKLVDIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS- 395

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
                   GKD     +             F  +   ++ H     +G     ++ +  P
Sbjct: 396 ---DSQAFGKDFNDYVI-------------FNSN---NQYHDYKTDNGDIYVYKVTKIEP 436

Query: 474 ARDRKLEEVLTDVKKDWKTVK 494
             D+   +V + V   +K  +
Sbjct: 437 ITDKT-TQVPSQVIDAYKQEE 456


>gi|54113793|gb|AAV29530.1| NT02FT0767 [synthetic construct]
          Length = 476

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 76/500 (15%), Positives = 167/500 (33%), Gaps = 51/500 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+      +     I ++ +   F+I G++    ++   + V  VG  ++    F    
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSRAYVAKVGDNEISSQQFQQYA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +                  A +    + IL  ++    +    +   +      +   I 
Sbjct: 61  QS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIF 103

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P+F  KD KFS +     +A  G    +      + +  T +    V      +    
Sbjct: 104 TNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVIDYDTK 162

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +    
Sbjct: 163 LLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKD 222

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK---F 296
               K +IS DE++A Y+ +KE +   +      +      + A E F    +      +
Sbjct: 223 NFVLKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIKY 282

Query: 297 IQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            +L ++ GK+ +   +     +   + +               +  +       ++  V 
Sbjct: 283 TKLEKQFGKAKTATIVDNNDTTINNVANSQF------FINSDKYATITIADNKLLVYQVD 336

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           N   +      ++K  I+      K+ +   +  + L   L  G  +D+  ++  I S  
Sbjct: 337 NSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS-- 394

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
                  GKD     +             F  +   ++ H      G     ++ +  P 
Sbjct: 395 --DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDSGDIYIYKVTKIEPI 436

Query: 475 RDRKLEEVLTDVKKDWKTVK 494
            D+   +V + V   +K  +
Sbjct: 437 TDKT-TQVPSQVIDAYKQEE 455


>gi|56707753|ref|YP_169649.1| hypothetical protein FTT_0628 [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670224|ref|YP_666781.1| hypothetical protein FTF0628 [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456823|ref|ZP_03665296.1| hypothetical protein FtultM_03409 [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370257|ref|ZP_04986262.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874566|ref|ZP_05247276.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604245|emb|CAG45261.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320557|emb|CAL08644.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568500|gb|EDN34154.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840565|gb|EET19001.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158924|gb|ADA78315.1| hypothetical protein NE061598_03585 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 476

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 76/500 (15%), Positives = 167/500 (33%), Gaps = 51/500 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+      +     I ++ +   F+I G++    ++   + V  VG  ++    F    
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSRAYVAKVGDNEISSQQFQQYA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +                  A +    + IL  ++    +    +   +      +   I 
Sbjct: 61  QS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIF 103

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +P+F  KD KFS +     +A  G    +      + +  T +    V      +    
Sbjct: 104 TNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVIDYDTK 162

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +    
Sbjct: 163 LLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKD 222

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK---F 296
               K +IS DE++A Y+ +KE +   +      +      + A E F    +      +
Sbjct: 223 NFVLKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIKY 282

Query: 297 IQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            +L ++ GK+ +   +     +   + +               +  +       ++  V 
Sbjct: 283 TKLEKQFGKAKTATIVDNNDTTINNVANSQF------FINSDKYATITIADNKLLVYQVD 336

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           N   +      ++K  I+      K+ +   +  + L   L  G  +D+  ++  I S  
Sbjct: 337 NSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS-- 394

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
                  GKD     +             F  +   ++ H      G     ++ +  P 
Sbjct: 395 --DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDSGDIYIYKVTKIEPI 436

Query: 475 RDRKLEEVLTDVKKDWKTVK 494
            D+   +V + V   +K  +
Sbjct: 437 TDKT-TQVPSQVIDAYKQEE 455


>gi|319790371|ref|YP_004152004.1| SurA domain protein [Thermovibrio ammonificans HB-1]
 gi|317114873|gb|ADU97363.1| SurA domain protein [Thermovibrio ammonificans HB-1]
          Length = 436

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 78/404 (19%), Positives = 139/404 (34%), Gaps = 71/404 (17%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           ML  IRK  R     I L ++   F+     +WG     FS    S V +V  Q +  + 
Sbjct: 1   MLSKIRKNLR--AFSIPLWIVAASFVGTIFLVWGRGS--FSGPSGSQVATVNGQPITLAE 56

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F   +K     + +K+G   N +  +   + +  L  LV  A L +  ++ GL+     V
Sbjct: 57  FNREYKTVEDELRRKLGDNFN-KLVKPNDIKRIALQRLVQRALLIELAKEEGLKVSDWAV 115

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I   P+F  ++ KFS  ++ + L  +G+  + + +   K L    V+ +       +
Sbjct: 116 AKAIEEMPIFQ-ENGKFSVKLYKAFLRAQGLTPQAFEETVRKDLLVQKVLTVVNHAPSVT 174

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
              L +  +  F  R + Y V            S   + Q+++K+K+ +     + +   
Sbjct: 175 QAELTELYKKSFGQRKIGYKVFTADQF--NPKVSEEEVEQFYKKHKEQFTKEAGEEV--Y 230

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           L                                           ++ A EA++  KKG+ 
Sbjct: 231 LLSFENTP----------------------------------QGKERAKEAYELAKKGE- 255

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
             +L                 K + P  +       L K+           G +I     
Sbjct: 256 LEKL-----------------KAFNPKPAPEKLAKELQKRPFI---FRSENGRLILAF-K 294

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
           +K S TV  ++VK  I  Q++  KA E   +  K     L  G 
Sbjct: 295 LKKSETVPLEKVKAQIEEQLKEEKALELALKAAKSFNGTLQSGN 338



 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 25/150 (16%)

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
            LE+V   +++  K  K  E              K  K+F    ++   +  T  Q    
Sbjct: 302 PLEKVKAQIEEQLKEEKALELA-----------LKAAKSFNGTLQSGNFTPQTFVQ---- 346

Query: 538 DNENKFFGYDGISQVF-SGPVEMVKCFPIENGLSYVVFK----VTNSKVGPVQEKDKFIS 592
               K      + ++F S P       P+E G  Y VF+    +T  K+    + +    
Sbjct: 347 --TFKPLDVQQVDRLFVSTPAGRRVIMPLEKG--YGVFEPEGPLTAGKID-ENKLNAVKL 401

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
            +     +  L+ ++  L+ + SV V+  L
Sbjct: 402 LVLNAKAQSDLNYLLTLLEQKASVKVNPQL 431


>gi|307721334|ref|YP_003892474.1| hypothetical protein Saut_1415 [Sulfurimonas autotrophica DSM
           16294]
 gi|306979427|gb|ADN09462.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 488

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/484 (16%), Positives = 173/484 (35%), Gaps = 50/484 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  +++  +  +  I++  +      F+ WG        + +  V  VG  ++      
Sbjct: 1   MITWMQRHKKWLIITIWISTIAFVGAGFVGWGQYSY---GNKAGAVAKVGDVEISKGELQ 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++ +     +Q      + E+A+  GLDK+ L  LV  A L        L      +  
Sbjct: 58  KTYSRLYAQYNQMFQGNFDEEKAKQFGLDKQALQQLVQQALLINLAHSYDLIITDKEMIA 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +     F  K+ +F  + +   L++  +  KEY     K L     + +    ++ S  
Sbjct: 118 ALKGQKAF-YKNGEFDKETYKLVLSQNRLTIKEYETELRKELLIQKTLKLL--PVKTSKN 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +     +     ++Y VL+   +       +  L +++E  K+N+       + Y   
Sbjct: 175 EENILNTIFNIADKINYKVLSFDDI--KVSLKDKELKKFWESKKNNFMT----DVIYESN 228

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
            +       + S+ ++   Y++N+  +   + +     +   +   ++    L   +   
Sbjct: 229 FIKVTPVSKKFSDTKIAEYYKENRTHFKDSDGK-----ILTLEAAKEKVLNELNAKEAKD 283

Query: 298 Q-----LAEEQGKSLSDISLGS--FSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           +     +A ++ K   DI+L +   SK   P +    D++  LA    +T  I+    Y 
Sbjct: 284 KALRTYIAFKKNKLPDDIALQNAKISKSNNPFNTQTLDTVSKLALTKPYTKPINIDGIYY 343

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR-LEEFLALGTSMDEISRRE 408
           I  ++ I PS   SF+E K ++          EK+ +     +  F+   +    I+  +
Sbjct: 344 IFELTKIVPSKPKSFEEAKSEVLPLYIAQIKKEKLMKLANNSVNTFIGKTSDFLTITSVD 403

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
           K+V +                          L ++F  D    K   + L +G  +   I
Sbjct: 404 KLVPLSKQE------------------AADFLQKLFVND---KKRSFIGLNNGKIVLYNI 442

Query: 469 KESI 472
            E  
Sbjct: 443 LEQK 446



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 94/260 (36%), Gaps = 36/260 (13%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
              ++ +  K+ + N++   +A +K    Y   +         D+I+ +   +S      
Sbjct: 260 GKILTLEAAKEKVLNELNAKEAKDKALRTYIAFK----KNKLPDDIALQNAKISKSNNPF 315

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
           +    D   K     PY + +                    DG Y   ++ + +P++ + 
Sbjct: 316 NTQTLDTVSKLALTKPYTKPI------------------NIDGIYYIFELTKIVPSKPKS 357

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
            EE  ++V   +      E++   AN  V  +   GK             LT   ++++ 
Sbjct: 358 FEEAKSEVLPLYIAQIKKEKLMKLANNSVNTFI--GKTSD---------FLTITSVDKLV 406

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
             +K    D + ++F    +  + F   N    V++ +   K+  + + +     + ++ 
Sbjct: 407 PLSKQEAADFLQKLFVN--DKKRSFIGLNNGKIVLYNILEQKLL-INKNNNVSDTIAKLK 463

Query: 599 NKDLLDSVIAYLKSQYSVTV 618
           +    + +I  L+++Y   +
Sbjct: 464 STMFNEGLIKTLQNKYQTEI 483


>gi|187931475|ref|YP_001891459.1| hypothetical protein FTM_0703 [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712384|gb|ACD30681.1| conserved hypothetical protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 477

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/501 (15%), Positives = 169/501 (33%), Gaps = 52/501 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59
           ML+      +     I ++ +   F+I G++    ++  S + V  VG  ++    F   
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +                  A +    + IL  ++    +    +   +      +   I
Sbjct: 61  AQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
             +P+F  KD KFS +     +A  G    +      + +  T +    V      +   
Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVIDYDT 162

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                 Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +   
Sbjct: 163 KLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK--- 295
                K +IS DE++A Y+ +KE +   +      +      + A E F    +      
Sbjct: 223 DNFVLKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIK 282

Query: 296 FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           + +L ++ GK+ +   +     +   + +               +  +       ++  V
Sbjct: 283 YTKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQV 336

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            N   +      ++K  I+      K+ +   +  + L   L  G  +D+  ++  I S 
Sbjct: 337 DNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS- 395

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
                   GKD     +             F  +   ++ H     +G     ++ +  P
Sbjct: 396 ---DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDNGDIYIYKVTKIEP 436

Query: 474 ARDRKLEEVLTDVKKDWKTVK 494
             D+   +V + V   +K  +
Sbjct: 437 ITDKT-TQVPSQVIDAYKQEE 456


>gi|242308919|ref|ZP_04808074.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239524583|gb|EEQ64449.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 489

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/402 (16%), Positives = 153/402 (38%), Gaps = 30/402 (7%)

Query: 1   MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  ++K  +  +  I++     +   F+ WG   +    S S+ V  VG  KV      
Sbjct: 1   MIGFMQKHKKYLMVIIWISTIAFIGAGFVGWG---SYSFSSTSNAVAVVGDIKVSIDKMQ 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             + +   + +Q +G  ++ E+A+ +G++++ ++NL+  A +  +  D+GL      +  
Sbjct: 58  REYARLYNIYNQLVGGTLDDEQAKKMGIEEQAINNLIVKALMLNYAYDLGLRVSKEEIIQ 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI     F  K  KF   ++   L    +  K++ +   +           +  +  + L
Sbjct: 118 EITSIEGFQNK-GKFDEQIYKQTLKDNQLKPKDFEEGIEE--GLLLQKLDALLNIPLTPL 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++     Y     V   V+N + +  +  P    + +++E  KD Y+      IS I  
Sbjct: 175 EIEALGAAYSMEDLVHIEVINKKDI--VFTPKEEEIKKYWENNKDIYQTQRGYEISSIFI 232

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
            +      I +  + L+  Y+  K ++     +     + P  +  D+  +  +  +   
Sbjct: 233 PL----DSIAVEENALEQYYKDFKNQFLDSNGQ-----IIPFAQAKDKVIEKFRDSQAQK 283

Query: 298 QLAEE-----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI----HGSFGY 348
           +  +E     +G++        +           + + S AK+ +    I     G  GY
Sbjct: 284 EALKEYISLRKGENQEAKDSTIYEGSDEYGADFIN-LLSQAKEQETLKPIRVNNKGKEGY 342

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           + A V  I PS   +++  K +        +    ++E   +
Sbjct: 343 ITAKVVKIIPSQPQTYEVAKANAKEDYVNAEQIRLLEEKATK 384



 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 92/265 (34%), Gaps = 46/265 (17%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRL---EEFLALGTSMDEISRREKIVSIDL 415
              + F + K  +  + R ++A ++  ++Y  L   E   A  +++ E S       I+L
Sbjct: 260 GQIIPFAQAKDKVIEKFRDSQAQKEALKEYISLRKGENQEAKDSTIYEGSDEYGADFINL 319

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
                  + +K   V                                Y+  ++ + IP++
Sbjct: 320 LSQAKEQETLKPIRVNNK-------------------------GKEGYITAKVVKIIPSQ 354

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
            +  E    + K+D+   +    +  KA + +  +  +G N   IG      L     + 
Sbjct: 355 PQTYEVAKANAKEDYVNAEQIRLLEEKATKQLGTF--KGVNVGYIGYGSEVEL---AGLT 409

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
           + +  +         ++ +   E      +EN    +++++ + +V       + + +LT
Sbjct: 410 KEEASDFI-------RILTTKKEEKGYILLENKA--ILYQIFDQRVKNSAIIKENLDFLT 460

Query: 596 QM----MNKDLLDSVIAYLKSQYSV 616
           Q      ++ +    + YL   Y +
Sbjct: 461 QNGTQIKSRLVEIEFLNYLSKTYKI 485


>gi|189219654|ref|YP_001940295.1| Peptidyl-prolyl cis-trans isomerase [Methylacidiphilum infernorum
           V4]
 gi|189186512|gb|ACD83697.1| Peptidyl-prolyl cis-trans isomerase [Methylacidiphilum infernorum
           V4]
          Length = 507

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 78/521 (14%), Positives = 182/521 (34%), Gaps = 60/521 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+I+R    +W+  I L  + + FL++  +    S   + +V  +  + +   +F  + 
Sbjct: 1   MLKILRTH--SWLLIIVLAAIGISFLLF-FNIPALSGLKNPSVAKIAGKNISLETFRLAR 57

Query: 61  K-----QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL-DQFIEDIGLEADHGR 114
           +       L    Q  G  +           + ILD +     +  Q  ++         
Sbjct: 58  QASSIEMALSGSRQSYGENL-----------QLILDQMAWTRLIFLQAAKEFHCIVPEEE 106

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAR----EGINEKEYIDHYTKMLSRTDVVGMFVG 170
           V   I + P    +  K+   ++   ++     +GI+E+ ++    + L    V    V 
Sbjct: 107 VVRFIQQLPFLQKE-GKYDASLYKRFVSSFLTPQGISEERFLQVMHEELVIGKVKKALVA 165

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN--YRAPE 228
            +      +D+     F    V  + +N              + + ++ +  +  Y  PE
Sbjct: 166 PIEVIPKEVDEIYAMTFGQVRVVLLRMNLEDFKKNIQIQPEEIEKEYKSHPKDPDYYTPE 225

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            ++  ++ F    + + ++    E                     +++   +  A EA +
Sbjct: 226 KRKAGFVFFPFPAELQNLKGKELEEAK-----------------RKILEQAEDFAIEASR 268

Query: 289 SLKK-GKKFIQLAEEQGKSLSDISLGSFSKE---YIPDVSLADSIFSLAKKGDFTPVIHG 344
            ++     F QLA+E+  S          K     +     + ++F L+     +  +  
Sbjct: 269 QVENSAANFEQLAKEKNLSYQLTEPFPADKPPSAIVEPEKFSKTVFGLSLDKAVSEPVET 328

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE----FLALGTS 400
           S GY +  + N++      F E+K  +  +++  KA E + +   ++E+     L  G  
Sbjct: 329 SKGYYVVVLLNVEKGSLRPFDEIKSTVEEKLKRKKAFEALFQKSAQIEKDLNRALKEGKD 388

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
           ++++++ E +     P           +    I +  QLL       +P+   H +   +
Sbjct: 389 IEQLAKAEGLSVEKPPAFVPIDPPKDLEAGNEIGFLCQLL-------EPMRLSHFLPTMN 441

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
           G         S P    +L E+   ++KD    +    +  
Sbjct: 442 GGVFIYLENRSAPEMPNEL-EIKDRLEKDLLMSRRQAFLEE 481



 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 90/254 (35%), Gaps = 24/254 (9%)

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
              +E K+ I     + +A +   E  +++E       + +++++ + +           
Sbjct: 246 KELEEAKRKI-----LEQAEDFAIEASRQVEN---SAANFEQLAKEKNLSYQLTEPF--- 294

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
                 K  +AI   E+    VFG     +    V    G Y+ V +        R  +E
Sbjct: 295 ---PADKPPSAIVEPEKFSKTVFGLSLDKAVSEPVETSKGYYVVV-LLNVEKGSLRPFDE 350

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEY---SKEGKNFRDIGKNLGASLLTTNQINRMD 538
           + + V++  K  K  E +  K+ Q+  +     KEGK+   + K  G S+        +D
Sbjct: 351 IKSTVEEKLKRKKAFEALFQKSAQIEKDLNRALKEGKDIEQLAKAEGLSVEKPPAFVPID 410

Query: 539 NENKFFGYDGIS---QVFSGPVEMVKCFPIENGLSYVVF--KVTNSKVGPVQEKDKFISY 593
                   + I    Q+   P+ +    P  NG  ++    +        ++ KD+    
Sbjct: 411 PPKDLEAGNEIGFLCQLLE-PMRLSHFLPTMNGGVFIYLENRSAPEMPNELEIKDRLEKD 469

Query: 594 LTQMMNKDLLDSVI 607
           L     +  L+  +
Sbjct: 470 LLMSRRQAFLEEWV 483


>gi|163781832|ref|ZP_02176832.1| hypothetical protein HG1285_03078 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883052|gb|EDP76556.1| hypothetical protein HG1285_03078 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 437

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 95/516 (18%), Positives = 183/516 (35%), Gaps = 95/516 (18%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW--GLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
           M  +I+K  R  +A I + V  + FL W   +SD            +V    +    F +
Sbjct: 1   MYGLIQKHKR--LAAIIIAVASLSFLFWMFSVSDIKQMFGLQRCAAAVNDYCISLREFNH 58

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
             ++   ++ +        E  R++ + +++L +L++   L Q   D+G+ A    V   
Sbjct: 59  ELRKYQSLLEK--------EELRTL-VKRQVLFSLINRELLYQKALDVGVVASDREVAEL 109

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I + P F  +  KFS  ++   L R G+   EY  +  K L+   ++     G   S   
Sbjct: 110 IKKDPQFQ-EGGKFSFKLYAETLERAGLTPVEYEGYLKKSLTIRKLLRFIKSGTYLSPKE 168

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           L+  +R      S    +LN   V     P+   L +++ +  + +  P           
Sbjct: 169 LEFQERILSARFSGRAYLLNASSVKLDYKPTLEELKEFYSRNAEKFSLP----------- 217

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                                         ++        ++ +A   ++ LK+GK    
Sbjct: 218 -----------------------------SVKRFRVWETADKGKAQSIYRELKRGK---- 244

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              E G    +  L S  K+ + ++ + +  F+L K             Y + ++    P
Sbjct: 245 -VPEGGSLFKEEELPSALKDTVRNLKVTEP-FTLTKV---------KGKYYVIYLEESSP 293

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
               SF+E +KDI   +   K +E V++  + L E L+ G  +D    R    +++  + 
Sbjct: 294 GRVKSFEEARKDIEKLLVEEKKAELVEKKARELRELLSKGARVDHKHVRFDNSTVEEFIT 353

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
            F  +             +++L  VF +D       T     G Y  V I++      R 
Sbjct: 354 LFKIQG------------DEVLRLVFSEDRVFGPYRTA----GGYAVVYIEK------RS 391

Query: 479 LE----EVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
            +    +    ++      K    VS  A +L  E 
Sbjct: 392 FDSKNIKNRGQLEDSLLNAKLDSLVSLFAEKLAEEA 427



 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 66/174 (37%), Gaps = 7/174 (4%)

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
           +++  T+    G Y  + ++ES P R +  EE   D++K     K AE V  KA +L   
Sbjct: 270 VTEPFTLTKVKGKYYVIYLEESSPGRVKSFEEARKDIEKLLVEEKKAELVEKKARELREL 329

Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
            SK  +      +   +++     + ++       G + +  VFS    +   +    G 
Sbjct: 330 LSKGARVDHKHVRFDNSTVEEFITLFKIQ------GDEVLRLVFSEDR-VFGPYRTAGGY 382

Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           + V  +  +     ++ + +    L       L+      L  +  + +++  +
Sbjct: 383 AVVYIEKRSFDSKNIKNRGQLEDSLLNAKLDSLVSLFAEKLAEEADIQINEEYL 436


>gi|89256253|ref|YP_513615.1| hypothetical protein FTL_0896 [Francisella tularensis subsp.
           holarctica LVS]
 gi|254367592|ref|ZP_04983613.1| hypothetical protein FTHG_00855 [Francisella tularensis subsp.
           holarctica 257]
 gi|89144084|emb|CAJ79335.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253403|gb|EBA52497.1| hypothetical protein FTHG_00855 [Francisella tularensis subsp.
           holarctica 257]
          Length = 476

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 77/502 (15%), Positives = 171/502 (34%), Gaps = 55/502 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59
           ML+      +     I ++ +   F+I G++    ++  S + V  VG  ++    F   
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +                  A +    + IL  ++    +    +   +      +   I
Sbjct: 61  VQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
             +P+F  KD KFS +     +A  G +   +      + +  T +    V     ++  
Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLGGM--DKLEQILAQNIQATIIPKTIVDTSIVTDYD 161

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                  Y  N+ +DY+ ++     +   PS   L  +++ +K+ Y  P  K ISY +  
Sbjct: 162 TKLLNSIYSVNKYIDYLKVSPTDFKSQIKPS-QHLQSYYDSHKNEYITPAQKTISYFIIT 220

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK-- 295
                 K +IS DE++A Y+ +KE +   +      +      + A E F    +     
Sbjct: 221 KDNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRYALEQFNEYTQNIDSI 280

Query: 296 -FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            + +L ++ GK+ +   +     +   + +               +  +       ++  
Sbjct: 281 KYTKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQ 334

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V N   +      ++K  I+      K+ +   +  + L   L  G  +D+  ++  I S
Sbjct: 335 VDNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS 394

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
                    GKD     +             F  +   ++ H     +G     ++ +  
Sbjct: 395 ----DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDNGDIYIYKVTKIE 434

Query: 473 PARDRKLEEVLTDVKKDWKTVK 494
           P  D+   +V + V   +K  +
Sbjct: 435 PITDKT-TQVPSQVIDAYKQEE 455


>gi|160871799|ref|ZP_02061931.1| putative peptidyl prolyl cis-trans isomerase D [Rickettsiella
           grylli]
 gi|159120598|gb|EDP45936.1| putative peptidyl prolyl cis-trans isomerase D [Rickettsiella
           grylli]
          Length = 484

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/489 (13%), Positives = 159/489 (32%), Gaps = 51/489 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFIN 58
           ML+ IR  S+ W+    + +L + F +WG+   +       +  V  +  Q +  S F  
Sbjct: 1   MLQSIRDKSQGWITNTVIGLLIIIFALWGIHGYVVFHESGNNKIVAKIAGQLLRQSDFEK 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            +++        +    + ++ +   L ++++        L               +   
Sbjct: 61  IYQRAYQQNRDYLNQSFSHDKKKVEALKEQVVREWEITQVLVYAALQSKYRISQTLIDSF 120

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           + + P F     +FS + F S L      + E+++   KML    V              
Sbjct: 121 LLQVPAFQSA-GQFSIEKFYSVLRANDYTKLEFLEEIKKMLLINQVQQGITQSAFVLPQD 179

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           +     +  + R   Y+++         +  ++ +  ++++ K  +R PE   I Y+   
Sbjct: 180 IRNYIEYNHQKRDFSYLIVPYSMFLNQQNIPDSRIFAYYQENKQLFRQPEQVSIEYVQLS 239

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           +  ++  +E  +      Y         P+   +          A+     ++    F +
Sbjct: 240 LKNEKNFLESRDKLAHLTY-------VHPDSLAI---------AANTLGLKIRSTPFFGK 283

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK-KGDFTPVIHGSFGYVIA-HVSNI 356
              +QG S +                +  + FS    +G+ + VI  +    +   +   
Sbjct: 284 TGGQQGLSKN--------------PKIITAAFSRDVLQGNNSAVIDLNTNTAVVLRIKKY 329

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
                  F EVK+ I   +    A  K ++           G ++     + ++ S++  
Sbjct: 330 NSEHRQLFNEVKEKIKKILNKQYAITKAQQ----------FGENLLRDPHKIEMSSMEKI 379

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT------VALPDGSYMWVQIKE 470
                   +K  +       ++LL  VF    P              L +G Y  +++  
Sbjct: 380 SQKLKWHFMKQIDRQDKKLNKELLDAVFRLLPPGKNVPDSFWMKGFRLKNGDYALIKLIT 439

Query: 471 SIPARDRKL 479
               ++  L
Sbjct: 440 VYNQQNLPL 448



 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 56/155 (36%), Gaps = 8/155 (5%)

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD-PLSKDHTVALPD 460
           D ++     + + +    F GK    + ++  P   +++   F +D    +    + L  
Sbjct: 262 DSLAIAANTLGLKIRSTPFFGKTGGQQGLSKNP---KIITAAFSRDVLQGNNSAVIDLNT 318

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
            + + ++IK+      +   EV   +KK        +   +KA Q      ++       
Sbjct: 319 NTAVVLRIKKYNSEHRQLFNEVKEKIKKIL----NKQYAITKAQQFGENLLRDPHKIEMS 374

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
                +  L  + + ++D ++K    + +  VF  
Sbjct: 375 SMEKISQKLKWHFMKQIDRQDKKLNKELLDAVFRL 409


>gi|254458909|ref|ZP_05072332.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
 gi|207084180|gb|EDZ61469.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
          Length = 488

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 79/483 (16%), Positives = 168/483 (34%), Gaps = 48/483 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  +++  +  +  I++  +      F+ WG          +  V  VG  +V      
Sbjct: 1   MITWMQRHKKYLIITIWISTIAFVGAGFVGWGQYSY---GDKAGAVAKVGNVEVTMGELQ 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++       ++      + E+A+S GL  + L  L   A +        LE +   +  
Sbjct: 58  KTYSNLYAQYNKMFQGNFDEEKAKSFGLQSQALKQLTDQALIINLALSYDLEINDAELLN 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           E+     F  KD  F+ +++   L++  ++ KEY     K L     + +    +  S  
Sbjct: 118 ELKTQEYF-FKDGVFNKEIYKQVLSQNNMSIKEYEVSVKKQLLIQKTLKLL--PVDVSKN 174

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            LD           ++Y +L++  +    D S+A L  ++E  + N+ +     + +I  
Sbjct: 175 ELDIISSVLNIADKINYKILSDEKI--NIDTSDAALKPFWEARQQNFMSEVTYEVKFIKQ 232

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                    +    ++   Y  NK  +   E +     + P +         L       
Sbjct: 233 SRVSN----KYEESQINEHYAANKTHFKDVEGK-----LLPLEGARSSVINELDAKATKD 283

Query: 298 Q-----LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP---VIHGSFGYV 349
           +     +A ++GK  SD+ + + +     +    + +  ++K    +P    I  +  Y 
Sbjct: 284 EALRGYIAYKKGKLASDVKVSTTTISASNNPYNENVLEQISKLSITSPYLKPILVNDEYF 343

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
              +  +  S   SF+E KKD+       +   K+ E  K        GT+ D I+  + 
Sbjct: 344 TFELLKVNSSKAKSFEEAKKDVLPMFVQEEKKNKLLELAKN-SVATFTGTTTDFITNEDA 402

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
               ++                      + L  +F   D   K   ++L +G+ +   I 
Sbjct: 403 AKITNMEP----------------ADANEFLIALFSSQD---KRGFISLKNGNVVLYNIL 443

Query: 470 ESI 472
           E  
Sbjct: 444 EQK 446


>gi|317051803|ref|YP_004112919.1| hypothetical protein Selin_1633 [Desulfurispirillum indicum S5]
 gi|316946887|gb|ADU66363.1| hypothetical protein Selin_1633 [Desulfurispirillum indicum S5]
          Length = 480

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 81/483 (16%), Positives = 160/483 (33%), Gaps = 67/483 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
           M+   R    +   KI L  +   F+     +WG+        G   V+ V   ++  + 
Sbjct: 1   MIHKFRNV--SAPVKILLWFVIATFVGSIFVVWGIQSGDQRSRG--YVIKVNDIEIGPNE 56

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F  ++ Q    IS   G   ++E  R   + + ++DNL+S A L Q  +   L      +
Sbjct: 57  FNRTYNQVHQNISALFGNQGDAEINRQ--IREIVIDNLISKALLLQEAQRRNLRVSDQEL 114

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
           +  IA    F  ++  FS  ++ + L    ++   + +   + L    +    V  +R +
Sbjct: 115 FNSIAAIEAFQ-EEGVFSRTLYRNVLEANKLSPAIFEEMQKESLLVEKIQNQIVAEVRIT 173

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
              L +  ++     + DYI+L         + +  VL  + E     Y  P+  +ISY 
Sbjct: 174 EDDLQEEFQWQQGRVAFDYIILFPELFADSVETNEQVLRAYHETNAKQYETPKSIQISYA 233

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-- 293
                 ++                                    Q+ A E  QSL++   
Sbjct: 234 FVPYDPQDS---------------------------------STQETASEVLQSLREAVV 260

Query: 294 ---KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
              K F   AEE              S  ++ + +  L    F L  +G +T VI G   
Sbjct: 261 QQQKDFATTAEEMEVEFVTSYIFDQNSIPEDLLRETRLIREAF-LMPQGRYTNVIRGQDK 319

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
             +       P   V ++E++  +       ++     E  +        G  +  I+  
Sbjct: 320 LYLVKKEQDIPPMVVPYEEIQDQVLADYIQHQSYVIAMEKAESFR-----GMELFAIAAE 374

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
                    L+ +   D  G       + E +++  F  +   +      +      ++Q
Sbjct: 375 VNAQPESTDLISY--MDTNGGP----GFNEDVMYLAFLTEVGQTAGPAEII--NIPFFLQ 426

Query: 468 IKE 470
           + E
Sbjct: 427 VTE 429



 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 82/247 (33%), Gaps = 19/247 (7%)

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
            E   E  + L E +       + +   + + ++        ++   +++     + +L+
Sbjct: 245 QETASEVLQSLREAVVQQQ--KDFATTAEEMEVEFVTSYIFDQNSIPEDLL---RETRLI 299

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
              F    P  +   V         V+ ++ IP      EE+   V  D+   ++     
Sbjct: 300 REAFLM--PQGRYTNVIRGQDKLYLVKKEQDIPPMVVPYEEIQDQVLADYIQHQSYVIAM 357

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEM 559
            KA          G     I   + A   +T+ I+ MD N    F  D +   F   V  
Sbjct: 358 EKAESF------RGMELFAIAAEVNAQPESTDLISYMDTNGGPGFNEDVMYLAFLTEVGQ 411

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL----TQMMNKDLLDSVIAYLKSQYS 615
               P E        +VT  +   ++  +     L     +    ++L   I   +S+ +
Sbjct: 412 TAG-PAEIINIPFFLQVTEKETPDMELFESLRPLLMEEVRERRRNEMLSDWIVEARSRAT 470

Query: 616 VTVHDNL 622
           + V+ +L
Sbjct: 471 INVNQSL 477


>gi|171463604|ref|YP_001797717.1| hypothetical protein Pnec_0905 [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193142|gb|ACB44103.1| conserved hypothetical protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 482

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 61/393 (15%), Positives = 129/393 (32%), Gaps = 30/393 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M + +RK  +  +  + ++++   F  +G+S     +   + +V V  + +       + 
Sbjct: 1   MFDTVRKH-QRILQFVLMLLIVPSFAFFGVSSYSSFLDKETDLVKVNGKSITAQEVDMAA 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           K++   +    G  V  + A+S+   + IL+ L+    L   + D+ L+     +   + 
Sbjct: 60  KRQAERV----GGNV--QIAQSLQFRQAILNELLQQRILGFAVSDLRLQVGKEALVKSLQ 113

Query: 121 RSPLFH---GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
             P       +D  F    F   LA  G+NE ++       L  + +V         S  
Sbjct: 114 NIPQIRALYKQDGSFDDARFKQLLASNGLNEGQFYAGQAFDLKISQLVNSVARTEIGSPK 173

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L +     Y   R V  +  + +   +  +PS   L  ++      + +PEY  + YI+ 
Sbjct: 174 LSEIVSTLYEMERQVQIMPFDAKDYLSKVNPSQEELQAFYAANSKLFESPEYVDVEYIVL 233

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
               KE     S                        ++ +        A   LK   +  
Sbjct: 234 KADSKEDAKVFSEKA-----------------DQFTKITYDQSDSLKPAADKLKLNIQSQ 276

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +     G +         +   +     +D       K +   V      +V A V    
Sbjct: 277 KTVTRSGATGVAKDH-PLANPKVVQSLFSDEAVK--NKRNIEAVQTAPGVFVSARVVTFH 333

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           P+  + F++V  ++  Q+    A +        
Sbjct: 334 PAQIMLFKDVATEVKRQVSQRMAEKLAVSAAAE 366



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 82/247 (33%), Gaps = 19/247 (7%)

Query: 381 SEKVKEDYKRLEEFLAL-GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           ++   E   +  +       S+   + + K+       V  +G     K+        ++
Sbjct: 241 AKVFSEKADQFTKITYDQSDSLKPAADKLKLNIQSQKTVTRSGATGVAKD--HPLANPKV 298

Query: 440 LFRVFGKDDPLSKDHT--VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
           +  +F  +   +K +   V    G ++  ++    PA+    ++V T+VK+        +
Sbjct: 299 VQSLFSDEAVKNKRNIEAVQTAPGVFVSARVVTFHPAQIMLFKDVATEVKRQVSQRMAEK 358

Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
              S A +      K+ K+       +         I+R    N   G   + QV S   
Sbjct: 359 LAVSAAAERYATLQKDPKSASGFASPV--------WISRNKPGNLVGG--ALDQVMSINP 408

Query: 558 EMVKCFPIEN--GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
           +        N  G+  ++++V   +     +     +    +  +      +AY +    
Sbjct: 409 DKFPALVSVNNPGVGAILYRVDQVRQPTGMDAKVHKAQA--LAAQSEFAGFMAYWRDVAG 466

Query: 616 VTVHDNL 622
           V V + L
Sbjct: 467 VKVINPL 473


>gi|78187764|ref|YP_375807.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium luteolum
           DSM 273]
 gi|78167666|gb|ABB24764.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium luteolum
           DSM 273]
          Length = 701

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 115/715 (16%), Positives = 216/715 (30%), Gaps = 120/715 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +  +R  +   +  +    L +    WG+ +       +    SV    VP+S +   ++
Sbjct: 4   MTSMRDKTHIILYTLLAAFLALIVFEWGM-NFSGPAGRNGQAGSVNGTPVPYSEYEEIYR 62

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           Q      Q       S  A  +GL ++  + LV    L++      +  +   +   I R
Sbjct: 63  QYSENYRQSNPGADISPEAE-LGLKEQAWNTLVDQKLLEEQFRKFRITIEDSEILAAIQR 121

Query: 122 -SP------LFHGK-DNKFSHDVFVSRLAREGINEK--EYIDHYTKMLSRTDVVGMFVGG 171
             P       F              S        E   +  D   + L    ++      
Sbjct: 122 PDPPQIIARNFMDPATGAIDRARLDSARKDPRNKEMWVQVEDIIRRELKIQKLLRALGTM 181

Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--PSNAVLTQWFEKYKDNYRAPEY 229
              ++  +D+     +   S  +I +   +    A     +  L ++++++K+ +  P  
Sbjct: 182 AHVTDREVDELVLRQYTRMSASFIPVPYSYAGDDASFPVKDDELRKYYDEHKEMFLQPPS 241

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEY-------------------------------- 257
           +   Y+ F +    K   ++  EL++                                  
Sbjct: 242 RSAEYVFFPLVPSAKDSLLARSELESLRGDFASASSDSAFVSVQSDEPGGADRTFDRSVF 301

Query: 258 --EKNKEKYFSPEIR-----------------TVEQLVFPNQKEA--------------D 284
             E     + SP +R                  V+Q+V  +Q  A               
Sbjct: 302 SPEAGSAIFGSPAMRPGGMIGPVADQGAYRLLKVKQIVTASQPVARASHILIGFNPANRA 361

Query: 285 EAFQSLKKGKK----------FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
           EA Q+  K +           F  LA     + G + S   LG F  E +     AD++F
Sbjct: 362 EAQQAGAKAQDILRQLKGGASFADLARRYSADIGSARSGGQLGWFRSERMV-PEFADAVF 420

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           S A  G     +   FG  I  V     S       V   ++  +R +  + +       
Sbjct: 421 SAA-PGTVVGPVATRFGLHIIKVEGFDRSAF-----VGSALSRNIRPSTETAESVRRIAM 474

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
             +  A      + +  EK        +   G   +   + +I Y E++    F      
Sbjct: 475 AFQMDAKDKGFAKTAETEK------REIAKTGDFTRNMPIPSIGYSEKIASFAFKA--GE 526

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
                V   +  +  + +        RKL +E+ + +  + K  K  E +  K   LV  
Sbjct: 527 GDLSDVLDTERGFYVMSLTGKNDTGYRKLDDELKSAITTELKREKKGEFIKKKLQALV-- 584

Query: 510 YSKEGKNFRDIGKN-LGASLLTTNQINRMDN--ENKFFGYDGISQVFSGPVEMVKCFPIE 566
            S  G   + I       SL T + I   D            +  +   PV+ +   P+ 
Sbjct: 585 -SVPGATLQKIAAADKNFSLFTADDIRWSDGFIPGYGVDRPLVEAMAGMPVQKL-SLPVR 642

Query: 567 NGLSYVVFKVTNSKVG----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               + VF V    +     P  EK      L QM  + L     A ++ Q  + 
Sbjct: 643 GNDGFAVFMVQKKTLPEGLDPALEKAAVAPRLLQMKQEQLFSEYFASIRKQAKIE 697


>gi|218961314|ref|YP_001741089.1| putative Peptidylprolyl isomerase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729971|emb|CAO80883.1| putative Peptidylprolyl isomerase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 595

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 91/636 (14%), Positives = 203/636 (31%), Gaps = 61/636 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK  +  V  I  +V  +     G+ + L   S    +  V   K+ +  +    
Sbjct: 1   MLDQLRKKQK-VVIYIVAIVFILGMAAVGIGELL---SPKPYLGKVNGTKITYEMYQQKI 56

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++     ++        E  R   ++ +  + LV+     Q I+   ++     V  E+ 
Sbjct: 57  QEIYERYAEMYKDQPIDENMRR-NIENQAWETLVNDILWQQQIKKHKIKITEDDVLTEMQ 115

Query: 121 RSP---LFHGK----DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
            +P   L   +    + +F    ++S L           ++    L R  +         
Sbjct: 116 NNPPQELMQNESLQTNGRFDKSKYLSALKNNPQFFAAMEEYVRGYLPRQKLQEKIKAQAG 175

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD-NYRAPEYKRI 232
            +   L        ++ S  +I             ++A +  +++K ++  Y+     RI
Sbjct: 176 ITIDSLKAQYAKETDSISGKFIWFEPNK-SDPVTVTDAEIKAYYDKNRETEYKKGPASRI 234

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
            Y          + + S+ +                           +  A+E +   ++
Sbjct: 235 KY-------LAFEEKPSDKD-----------------------YASVKLLAEELYNRARR 264

Query: 293 GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G+ F  LA+E            SLG F K  +         F+L K G+ +  +  SFG+
Sbjct: 265 GEDFATLAKEYSDDPGSKDNGGSLGVFGKGQMV-PEFEQVAFAL-KVGEISKPVKTSFGW 322

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I    +I    T++    +   ++ + I +AS++ K       E  A       I    
Sbjct: 323 HIIRCDSI---ATITKDNPQIKASHILLIVEASDETKNAILDKAESAAKLIKKKGIDAAA 379

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
           K + +++   D+   D +   +  I     LL  +    +    D      +   + V +
Sbjct: 380 KELGVEVQETDWVPHDQEY--IPGIGNNGALLQFMRKGKEKAISDVITDQQNRKIVAV-L 436

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
            ++        E+V   +K   +  K    V  KA + V +Y    + F    K  G  +
Sbjct: 437 TDNKKVYYEDFEKVKLRIKYQLEKEKKVANVKKKAEEFVAKYP-SSEYFSAAAKE-GWQI 494

Query: 529 LTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--PVQ 585
           +  N   R  +  N     +  +   +               S+++      K       
Sbjct: 495 IELNNHKREQSVPNVGLCEEFTNAALALEAGQTSGLIHTKEGSFIISCTERIKPDFNAFA 554

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
           +  +    + + +     +     ++    +  +  
Sbjct: 555 KDKERQEQIRKTLEDAAWNRWYDQMRKSAKIIDNRA 590


>gi|255533907|ref|YP_003094279.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus
           DSM 2366]
 gi|255346891|gb|ACU06217.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus
           DSM 2366]
          Length = 698

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 97/715 (13%), Positives = 220/715 (30%), Gaps = 120/715 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL-----FSVSGSSTVVSVGRQKVPFSSF 56
           +  +R  +      I +  +    + + + DA+     F       V SV  +++    F
Sbjct: 4   MTFLRNRA----GYILVGAIGFAIVAFLVGDAINVGKPFWAESQKVVGSVDGEEISIDQF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                Q L    Q+ G   N+ + +++ +D  +    ++   L +    +GL      ++
Sbjct: 60  GPKVDQSLAQFKQQYGGSGNA-QMQAMAVDN-VWQGEIASILLGKEYNRLGLTISSDELF 117

Query: 117 GEIAR-------SPLFHGK-DNKFSHDVFVSRLAREGINEKE------YIDHYTKMLSRT 162
             +            F      + +    ++ L ++  N +         +   K   + 
Sbjct: 118 DLLQGKNPSPLIVQYFGNPQTGEVNRAEVLASLKQQDKNPQLEKQWELLQNEIEKQALQK 177

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYK 221
               +    +  + L  +   +   +  S  Y +L+   VP A   P+ +  + ++ + K
Sbjct: 178 KYANLISNSIYVTTLEANDDYQNRNKLASFKYTLLDYAAVPDATVKPTESDYSDYYNENK 237

Query: 222 DNYRAP------EYKRISYILFDVHEKEKKIEI--------------------SNDELQA 255
             +  P      EY   S           K ++                    S+ ++  
Sbjct: 238 KRFENPSETRSFEYVAFSVSPTKEDSAAVKTQVDKLAADFRTAANDSLFAAVNSDVKVPY 297

Query: 256 EY----------------------------------EKNKEKYFSPEIRTVEQLVF---- 277
            Y                                   K  +  FSP+      ++     
Sbjct: 298 AYMSKGKLDPAVDSVVFNLPAGSYYGPRFSGNSYKLIKVIDTRFSPDSVKASHILLDPSK 357

Query: 278 -----PNQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSI 329
                  +K AD     ++ G  F  LA++    G       LG+FS+  +      D+ 
Sbjct: 358 MGGADKAKKLADSLKTLVQNGASFAALAKQYSIDGSKDKGGELGTFSRGQMV-PVFEDAA 416

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSN-IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           F+  K GD   V+   FG  +  +   I  S       ++K +A+     K  +   +  
Sbjct: 417 FN-GKAGDL-KVVTSQFGVHLIKIEKQIGSSKVAKLAYIEKGLAS---SNKTRDAAYKKA 471

Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
                 +      +   ++   V +   +    G          +    QL+   +  D 
Sbjct: 472 SAFLNEVKSNNFAELAQKKGYTVGVADRVTPTQGF------APGLDSPRQLIRDAYATDK 525

Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
                    + D +Y+  ++ +  P     LE+V  +++   +T   A+ ++ K N+ + 
Sbjct: 526 GEILKEVYQM-DNAYVVARVTDIKPKGTLSLEDVKKEIEPMVRTAVKAKMLTEKMNKAL- 583

Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIE 566
              +   N   + + LG ++     I   +        +   +  VF      +    I+
Sbjct: 584 ---QGSANLAQVAQKLGKTVAPVENIVFANPIIPGAAQENKLVGSVFGSQPGKL-SKAID 639

Query: 567 NGLSYVVFKVTN-SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
                  F V   S+  P+    K    + Q   +  L +    L+ +  +  + 
Sbjct: 640 GTAGVYAFTVDGFSQPAPLANTYKQKEAMMQAGGQRALGAAFQALQDKSKIKDNR 694


>gi|225023875|ref|ZP_03713067.1| hypothetical protein EIKCOROL_00741 [Eikenella corrodens ATCC
           23834]
 gi|224943349|gb|EEG24558.1| hypothetical protein EIKCOROL_00741 [Eikenella corrodens ATCC
           23834]
          Length = 513

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/509 (16%), Positives = 177/509 (34%), Gaps = 51/509 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M  I+ K  R  ++++ L ++ V F+ +G +  L S   SS +  +G   +         
Sbjct: 1   MFAIVEKHRR--LSQVLLGLITVTFVGFG-AQTLTSGMHSSYISKIGNTHITAEQVQELL 57

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE-ADHGRVWGEI 119
           ++                 +        +  +LV  A  DQ   ++G+      ++ G I
Sbjct: 58  RE-------------APRHSDQPISKDDVYQSLVQQAYFDQGAAELGVGELSIEQIKGVI 104

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            R P F   + +FS + F + L + GI E+  I+       R  ++ +   G   S+   
Sbjct: 105 TRDPSFQ-VNGQFSPEQFQAYLRQRGITEERLIEEMRSQYRRQTLISLLSNGNIVSDSQA 163

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           +Q        R +     N     +   P++A L  +FE  K  Y  P   ++ ++  +V
Sbjct: 164 NQILALTGSERELRTAPFNAADFASKVQPTDAALRSYFEANKAKYALPLAVKLEFVDLNV 223

Query: 240 HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
            E  K+  +S  ELQ  Y           P   +V+  +  + ++   A       ++  
Sbjct: 224 EELAKQQTVSAQELQEAYSNLPTAASEAKPPFESVKAQLEESVRQRKAAQALGNAREQLA 283

Query: 298 QLAEEQGKSLSDISL----------GSFSKEYIPDVSLADSIFSLAKKGDF------TPV 341
           QLA +   SL  ++              S+       L  ++       +       + V
Sbjct: 284 QLAFDHPDSLQKVAQEMKLPLQKHEEWLSQPEAAAAKLPQAVQEAMFSAEVIERRHNSEV 343

Query: 342 IHGSFGYV-IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
           +    G + +   +++  +   SF+E K+ +       ++++  +    +    L  G +
Sbjct: 344 LDMGNGVLRVLRATDVSKARNQSFEEAKEAVRKDYVAVESAKLAQAAAAQALSNLQAGKA 403

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
           +D +       +    L    G       V A P                     + LP+
Sbjct: 404 VDNLQWSNPEKASATQLQQAVGLQNFAAIVKAHPQN------------GKPGYAVITLPN 451

Query: 461 GSYMWVQIKESIPA--RDRKLEEVLTDVK 487
           G+   V+++         ++L E+   V 
Sbjct: 452 GNAALVEVRAISLPENSKQQLPELRQQVA 480



 Score = 37.7 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
                 E V   +++  +  K A+ + +   QL         + + + + +   L    +
Sbjct: 250 EAKPPFESVKAQLEESVRQRKAAQALGNAREQLAQLAFDHPDSLQKVAQEMKLPLQKHEE 309

Query: 534 -INRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
            +++ +             +FS  V       +   + NG+   V + T+      Q  +
Sbjct: 310 WLSQPEAAAAKLPQAVQEAMFSAEVIERRHNSEVLDMGNGVLR-VLRATDVSKARNQSFE 368

Query: 589 KFISYLT 595
           +    + 
Sbjct: 369 EAKEAVR 375


>gi|78045210|ref|YP_359073.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997325|gb|ABB16224.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 337

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/393 (17%), Positives = 145/393 (36%), Gaps = 74/393 (18%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           +V + + F++     AL        V  V  + +    F   + Q    +  + G  + S
Sbjct: 7   VVAVLLTFVL-----ALIVAGCGDYVAKVNGKTISKKDFDRRFAQVQADMKLR-GVDLTS 60

Query: 78  ERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SH 134
              + +   L ++ LD +++   + ++ ++  +E     +  +I           +F S 
Sbjct: 61  TEGQKMLQSLKQQTLDQMINEILISEYGKEKKIEPTKDEITNKINEIRA------QFPSP 114

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
             F   L    I +K+  +     L    +      G+                      
Sbjct: 115 QDFEKALKDRNITDKDLQEMVRVQLINDKIYNEVTKGI---------------------- 152

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                         S   + +++EK+K+  +++ PE +++ +IL  V++           
Sbjct: 153 ------------TVSEQEVKEYYEKHKNEPDFQTPEQRQVRHILIAVNDGNA-------- 192

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
                 +N   +     RT        +K A+E  + +K GK F  LA+E+         
Sbjct: 193 ------QNNPHFNINVKRT----DAEAKKLAEELIKQIKAGKDFATLAKEKSDDPGVKEN 242

Query: 313 G---SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
           G   +FS+  +      D+ F+L K GD T   +  +FGY I  +  I P+   +++EVK
Sbjct: 243 GGQYTFSRGEMVK-EFEDAAFALKKPGDITETPVKTAFGYHIIKLEKIIPARQKTYEEVK 301

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           + + N +   K  E   +  + L++   + T +
Sbjct: 302 EQLKNYLLEKKKREAYNKFLEDLKKKAKIETKL 334



 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 44/131 (33%), Gaps = 5/131 (3%)

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
            VK  +  + K  + +++  K GK+F  + K             +          +    
Sbjct: 201 NVKRTDAEAKKLAEELIKQIKAGKDFATLAKEKSDDPGVKENGGQYTFSRGEMVKEFEDA 260

Query: 552 VFSGP-VEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSV 606
            F+      +   P++    Y + K+            + K++  +YL +   ++  +  
Sbjct: 261 AFALKKPGDITETPVKTAFGYHIIKLEKIIPARQKTYEEVKEQLKNYLLEKKKREAYNKF 320

Query: 607 IAYLKSQYSVT 617
           +  LK +  + 
Sbjct: 321 LEDLKKKAKIE 331



 Score = 38.4 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 99/289 (34%), Gaps = 37/289 (12%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE--IRTVEQLVFPNQKEADEAFQ 288
            I+ IL   + KEKKIE + DE+  +  + + ++ SP+   + ++     ++   +    
Sbjct: 78  MINEILISEYGKEKKIEPTKDEITNKINEIRAQFPSPQDFEKALKDRNITDKDLQEMVRV 137

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            L   K + ++ +  G ++S+  +  + +++  +                         +
Sbjct: 138 QLINDKIYNEVTK--GITVSEQEVKEYYEKHKNEPDFQT-------------PEQRQVRH 182

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
           ++  V++        F          + + +   + K+  + L + +  G     +++  
Sbjct: 183 ILIAVNDGNAQNNPHFN---------INVKRTDAEAKKLAEELIKQIKAGKDFATLAKE- 232

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAI--PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
                     D  G    G +         ++     F    P     T       Y  +
Sbjct: 233 --------KSDDPGVKENGGQYTFSRGEMVKEFEDAAFALKKPGDITETPVKTAFGYHII 284

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           ++++ IPAR +  EEV   +K      K  E  +     L  +   E K
Sbjct: 285 KLEKIIPARQKTYEEVKEQLKNYLLEKKKREAYNKFLEDLKKKAKIETK 333


>gi|224824986|ref|ZP_03698092.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
 gi|224602657|gb|EEG08834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
          Length = 340

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 139/359 (38%), Gaps = 34/359 (9%)

Query: 280 QKEADEAFQSLKKG-KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           +  A+   + ++    KF +LA+    + G + +   LG F +  +      D  F + +
Sbjct: 2   RSAAEVLLKEVRANPAKFAELAKTRSQDPGSAANGGDLGFFGRGAMVKP-FEDVAFRM-Q 59

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G  + ++   FG+ I  +  +K      F  VK ++  +++  KA+ + +   ++L E 
Sbjct: 60  PGQISELVETEFGFHILKLDEVK---QPVFAAVKGEVEQRLKRQKAAAQFRAASEKLGEL 116

Query: 395 LAL-GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA-IPYKEQLLFRVFGKDDPLSK 452
                 S+  IS + K+          +   V+GK  +  +    +LL   F  D    K
Sbjct: 117 AYQQADSLKAISDQLKLSP------QHSDWLVRGKPASDPVLNNPKLLEAAFSDDVLKGK 170

Query: 453 --DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
                V L   + + V++ E  P R + L EV   +K +    + A+    + + L+ E 
Sbjct: 171 HNSEPVDLGKNTLVVVRVAEHQPERQQTLAEVQNVIKAELVRREGAKLAEKRGDALLTEL 230

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENG 568
            K GKN                 ++R            +  VF+     +  F    ++G
Sbjct: 231 -KAGKNIDSQ------PWEPAQTVSR--RSFGALSLPEVRAVFAASATKLPAFAGVKQDG 281

Query: 569 LSYVVFKVTNSKVGPV---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            +YVV+++      P     E+ +    + +M     + S +  L+ +Y VT+     +
Sbjct: 282 GNYVVYRIDKVIPAPAPSLAERSQLSGLIGEMNANAQVASYLEALREKYKVTLSQQPAE 340


>gi|224373001|ref|YP_002607373.1| hypothetical protein NAMH_0972 [Nautilia profundicola AmH]
 gi|223589838|gb|ACM93574.1| conserved hypothetical protein [Nautilia profundicola AmH]
          Length = 478

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/512 (15%), Positives = 178/512 (34%), Gaps = 45/512 (8%)

Query: 1   MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+E ++   +  V  I++  +      F+ WG          SSTV  +   +V      
Sbjct: 1   MIEWMQTHRKWLVITIWIATIAFIGAGFVGWG---QFQFGRKSSTVAKIKDTEVSIQDVQ 57

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             +       ++++G  ++   A  +GL K+  D  +    L Q+ +D+G+      V  
Sbjct: 58  EVYNNLFQEKNKQLGGTLDDATAEKMGLKKQAFDMAIQQGILRQYAKDLGMYVTDEEVAK 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++ +   F           ++  L + G   K++     K L    ++      ++PS  
Sbjct: 118 QVLQ--YFK------DKKTYLMYLKQTGQKAKDFEAKLRKQLLIQKLLTALH--IKPSKT 167

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L        + + +++  ++N   V    + S   +  ++EK K  Y++P   +I+ +  
Sbjct: 168 LQLTFASALYNSDNLEIKIINKSSV--KVNLSEDEIKAFWEKNKQKYQSPTMYKIAIVKT 225

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
            +         + ++L+A Y +NK  Y + +   +      NQ + D   +  KK     
Sbjct: 226 PIKGVA-----TENDLKAFYNENKTNYRNDKGEILTYEEAKNQVKKDYLAKISKKDAIIA 280

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               ++G    ++   + + + IP    A+ +  L + G +      +  Y+ A +    
Sbjct: 281 YKKLKEGAENYELLTLTINNKIIP----AEKMQKLIQTG-YLKPFVDNNEYISAKLVEEI 335

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
               + ++E K  +   +   K  + ++   K   +      +                +
Sbjct: 336 KPKPLPYEEAKAQVTKDLLNIKTLQALENKAKEALKGFNGTKT--------------GFV 381

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
             +    +KG    +     + LF  F  +   +     AL     +  ++ E       
Sbjct: 382 TKYDANKIKG---LSPQEATEFLFTEFSLELNKNYLLIPALNPQKAVVYKVLEQKLLDKA 438

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
           K E+    V         A  +      L+ +
Sbjct: 439 KYEKNKEQVAAMADATLNAALLDDLIKDLMAK 470


>gi|307719645|ref|YP_003875177.1| PPIC-type PPIASE domain-containing protein [Spirochaeta thermophila
           DSM 6192]
 gi|306533370|gb|ADN02904.1| PPIC-type PPIASE domain protein [Spirochaeta thermophila DSM 6192]
          Length = 336

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 128/357 (35%), Gaps = 74/357 (20%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                  V  ++VP        ++ +    Q+ G  V+ E  +   L +++LD L+    
Sbjct: 43  SGEVAARVNGEEVPSKEVEREVQRYVAQY-QQYGMEVSPEEEQK--LREQVLDVLIGRLL 99

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L Q  + +GL  D  +V  +I +   +  +    S + F + LA+ G  E+E+ +  ++ 
Sbjct: 100 LLQEAKRMGLSVDQAQVEAQIEQ---YKLQSG--SEETFKNILAQAGYTEEEFREELSRA 154

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
                VV                                    V      S+     +++
Sbjct: 155 FLLQQVVD---------------------------------EKVTKHLSVSDEEARAYYD 181

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           +  + +  PE  R  +IL  +         S +E +A Y                     
Sbjct: 182 ENPEQFEQPEQIRARHILIRLDPDA-----SKEEEEAAY--------------------- 215

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
              +  E  + LK+G  F +LA        + +   LG F +  +   +  ++ F+L + 
Sbjct: 216 --AKIHEVQEKLKQGADFAELARTYSEGPSAPNGGDLGFFGRGQMV-PAFEEAAFAL-EV 271

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
              + V+   +G  +  V++ + +   SF+EVK  +   +   K+SE +    + L+
Sbjct: 272 NQVSDVVRTEYGLHLIQVTDKQEAGKASFEEVKDQLKEMLLQQKSSEAINALVEELK 328



 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 9/135 (6%)

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
              +  E        ++E L  G    E++R       + P     G          +P 
Sbjct: 206 ASKEEEEAAYAKIHEVQEKLKQGADFAELARTYS----EGPSAPNGGDLGFFGRGQMVPA 261

Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
            E+  F +      +++   V   +     +Q+ +   A     EEV   +K+     K+
Sbjct: 262 FEEAAFAL-----EVNQVSDVVRTEYGLHLIQVTDKQEAGKASFEEVKDQLKEMLLQQKS 316

Query: 496 AEEVSSKANQLVLEY 510
           +E +++   +L  + 
Sbjct: 317 SEAINALVEELKGKA 331


>gi|297519828|ref|ZP_06938214.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           OP50]
          Length = 141

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 5/141 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI   ++ V F++ G+S  L    G++    V  Q++    F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G   +   +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFV 138
            I  +P F   D KF +  + 
Sbjct: 120 AIFATPAFQ-VDGKFDNSRYN 139


>gi|83816153|ref|YP_445540.1| peptidylprolyl cis-trans isomerase [Salinibacter ruber DSM 13855]
 gi|83757547|gb|ABC45660.1| peptidylprolyl cis-trans isomerase [Salinibacter ruber DSM 13855]
          Length = 691

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/714 (11%), Positives = 216/714 (30%), Gaps = 117/714 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFS---VSGSSTVVSVGRQKVPFSSFI 57
           +  +R+ +      + L +L + F +IW L D+         +  V +V    +    + 
Sbjct: 4   MNTLRQNTG-----VILWILVLSFGIIWTLQDSDVFSAMNQTNRNVATVNGNPIQNEDYQ 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              K++     Q++G  +N +      + ++  + +V+   L Q ++ +G+      V  
Sbjct: 59  RILKRQRQRFQQQMGGDMNPQM--ESRVRERAYNQVVNQELLQQEMKRLGISVTDSEVEA 116

Query: 118 EIA-RSP------LFHGKDNKFSHDVFVS----------------RLAREG--------- 145
            +   +P       F     + ++ +  +                 L R+          
Sbjct: 117 MVFGENPHPVIRRQFADSTGQINYQLLQNMASNPEARTQWIKLEEFLRRQRRQQKMSSLV 176

Query: 146 -----INEKEYIDHYTKMLSRTDVVGMFVGGMRPSN----LLLDQAKRFYFENRSV--DY 194
                ++E +  D+Y +  S      + +   R S+    +     + +Y  NR      
Sbjct: 177 QSTIQVSEADIKDYYRRQNSSASAQYVALRYARVSDDSITVTESDLRDYYDNNREAYKRE 236

Query: 195 IVLNNRHVPAIADPSNAV----------LTQWF----------------EKYKDNYRAPE 228
             +  ++     + +             L   F                + +   YR P+
Sbjct: 237 KTVTLQYATTSKEATAEDSSGIAGDLAGLRADFATTENDSLFLLNNASDQDFSSAYRTPD 296

Query: 229 Y---KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
               +    +            +         +    +    +      ++    +   E
Sbjct: 297 QMNARVADSVYASPEPGRIVGPVFGGGQAHLLKVRDTRPAENDFLHARHILLKTDQADSE 356

Query: 286 AFQSLKK--------GKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
               L+            F ++A    + G +     LG F++  + D +  D+ F  A+
Sbjct: 357 VAGRLRAIRDSLEAGAASFAEMARRYSDDGSASDGGDLGWFARGSMVD-AFEDAAFG-AE 414

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G     +   FGY +  V                D+A  +  ++A+  + +   +L + 
Sbjct: 415 PGTLVGPVRSEFGYHLIRVEARASQAVQV-----ADLAYNLSPSRAT--LSDKESQLGDL 467

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
                         + + + +  V           +       Q L          +   
Sbjct: 468 AYFAEEEGAFEEEAQRLGLSVQEVQVETDQSSVPGIGQSAALSQFLESASN----GTISD 523

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
            + L D  ++  ++    P   R   EV + ++   +  K     + +  + + +     
Sbjct: 524 VIELSD-KFVVAEVTNVTPEGYRSFSEVKSQIRPQVELQKKRAVQTRRMERALAQ----- 577

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYV 572
             F  + + LG  L T + +    +     G +   +  VF             N  +++
Sbjct: 578 NTFEALPEALGTELRTQSDLTYSTSTVPGLGQEPQFVGTVFGLDEGETSGVVAGNNAAFI 637

Query: 573 VFKVTNSKVGPVQE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           V     +   P+ +  + +    L +   + +  + IA LK   ++  + + ++
Sbjct: 638 VKTTQKTTPPPLTDQKRKQLRQRLLKQRRQQVSSNWIAALKEDATIKDNRSQLR 691


>gi|145589120|ref|YP_001155717.1| hypothetical protein Pnuc_0937 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047526|gb|ABP34153.1| hypothetical protein Pnuc_0937 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 487

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/384 (17%), Positives = 144/384 (37%), Gaps = 38/384 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M + +RK  +  + +I L++  VP F+++G+S     +   + +V V  + +      ++
Sbjct: 1   MFDTVRKHQK--LLQIVLMLFIVPSFVMFGISSYSGFLDKETDLVKVNGKPITAQEVDSA 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            K++   +    G  +  + A+S+   + IL+ L+    L   + ++ L+     +   +
Sbjct: 59  AKRQAERV----GGNI--QIAQSLQFRQAILNELLQQRILGFAVINLRLQVGKEALIKSL 112

Query: 120 ARSPLFH---GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
              P       +D  F    F   LA  G+NE+++       L  +  V        P+ 
Sbjct: 113 QNIPQIRALYRQDGSFDDVRFKQLLASNGLNEEQFYASQAFDLKISQFVNSVARTELPTP 172

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L +     Y   R V  +  + +      +P+   L  ++      + +PEY  + YI+
Sbjct: 173 KLSEIVSTLYETERQVQSLSFDAKEYINKVNPTQEELQAFYNANTKLFESPEYIDVEYIV 232

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                KE                   K FS +      + +        A   LK     
Sbjct: 233 LKADPKED-----------------AKGFSAKADQFANMTYDQADSLKPAADKLK----- 270

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF---SLAKKGDFTPVIHGSFGYVIAHV 353
           + +  ++G + S  S G+     + +  +  S+F   ++  K +   +      +V A V
Sbjct: 271 LSIQTQKGITRSGPS-GASKDNPLANPKVVQSLFGDDAVKNKRNIEAIQTSPGVFVSARV 329

Query: 354 SNIKPSFTVSFQEVKKDIANQMRI 377
               P+  + ++EV  ++  Q+  
Sbjct: 330 VTFHPAQILPYKEVATEVKRQVSQ 353



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 71/242 (29%), Gaps = 10/242 (4%)

Query: 384 VKEDYKRLEEFLAL-GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
                 +          S+   + + K+       +  +G    G          +++  
Sbjct: 244 FSAKADQFANMTYDQADSLKPAADKLKLSIQTQKGITRSG--PSGASKDNPLANPKVVQS 301

Query: 443 VFGKDDPLSKDHT--VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
           +FG D   +K +   +    G ++  ++    PA+    +EV T+VK+        +   
Sbjct: 302 LFGDDAVKNKRNIEAIQTSPGVFVSARVVTFHPAQILPYKEVATEVKRQVSQRAAEKLAI 361

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           + A +      K+ K        +  S      +  +  ++              P  + 
Sbjct: 362 AAAAERYASLQKDPKLATGFAAPIWVSRNKPANLVGLALDDVMSVNTN-----QLPAIVS 416

Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
              P      Y V +V        +        +  +  +      +AY +   SV V +
Sbjct: 417 VANPGVGTTLYRVDQVRQPAGVDAKAHKAQAQQIQALSAQSEFAGFMAYWRDAASVKVIN 476

Query: 621 NL 622
            L
Sbjct: 477 PL 478


>gi|288817631|ref|YP_003431978.1| hypothetical protein HTH_0310 [Hydrogenobacter thermophilus TK-6]
 gi|288787030|dbj|BAI68777.1| hypothetical protein HTH_0310 [Hydrogenobacter thermophilus TK-6]
 gi|308751229|gb|ADO44712.1| Formiminotransferase domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 444

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 155/442 (35%), Gaps = 67/442 (15%)

Query: 1   MLEIIRKASR--TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
           M  +I+K      ++  +     F+     G    + SV G   V  V    +       
Sbjct: 1   MYTLIQKHKTLLVFIVTVASGAFFLWLFFTGSVRDITSV-GKKCVAEVNGSCITLRD--- 56

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            +++EL   S      +         + K++++NL++   L Q    +G  A    V   
Sbjct: 57  -YRRELLRFSNIQSRDL------EEVIKKQVIENLITQELLYQKARSLGFYASDEEVVSV 109

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I   P F  +   FS   +   LAR G+   EY D+  +ML+   ++ +    +  S   
Sbjct: 110 IKSDPTFQ-EGGVFSASKYKEMLARLGLEPGEYEDYIRRMLTVQKLLALVSNSVYLSEAE 168

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            +          S    ++    V     P+   +  ++EK K+ +R PE          
Sbjct: 169 KNINLAVQSTLLSGKLYIITPSDVEVSYTPTQEEMMSFYEKNKELFRRPE---------- 218

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                                          + V      ++ + +E ++++K+GK+   
Sbjct: 219 ------------------------------KKLVRVWAEKDKAKVEEIYRAIKEGKQ--- 245

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
             +   + L         K    +VS  D      K G    V      Y+I ++  ++P
Sbjct: 246 -VQGYTEYLLPDDANRLPKGVSSEVSKLD-----QKDGIL--VTKEGDEYLIVYLYRVEP 297

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
           +   SF+EVK+ I + +   + +  +++  + + + L  G  +    +        +  +
Sbjct: 298 AGIRSFEEVKEQIRSALIDKRKASLLRDKAQEIYKRLTEGKDVS--VKYLTFEDTPVDQI 355

Query: 419 DFAGKDVKGKEVAAIPYKEQLL 440
               K  +G+ V+ I  K+++ 
Sbjct: 356 MSIAKVKEGQVVSFILSKQKVF 377



 Score = 70.4 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 83/224 (37%), Gaps = 14/224 (6%)

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL--SKDHTVALPDGS 462
           + ++K    ++      GK V+G     +P     L +    +      KD  +   +G 
Sbjct: 226 AEKDKAKVEEIYRAIKEGKQVQGYTEYLLPDDANRLPKGVSSEVSKLDQKDGILVTKEGD 285

Query: 463 -YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
            Y+ V +    PA  R  EEV   ++      + A  +  KA ++    ++        G
Sbjct: 286 EYLIVYLYRVEPAGIRSFEEVKEQIRSALIDKRKASLLRDKAQEIYKRLTE--------G 337

Query: 522 KNLGASLLT--TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
           K++    LT     ++++ +  K      +S + S   ++   + +  G    V      
Sbjct: 338 KDVSVKYLTFEDTPVDQIMSIAKVKEGQVVSFILS-KQKVFGPYELSQGYGVFVITDRKK 396

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           K    +E  K    +  M +   ++ +I +L     + +++ +I
Sbjct: 397 KPADEEEIKKLTQDILNMKSDATVNYLIEHLIRSAKIKINEEVI 440


>gi|332295328|ref|YP_004437251.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178431|gb|AEE14120.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermodesulfobium
           narugense DSM 14796]
          Length = 409

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/387 (16%), Positives = 124/387 (32%), Gaps = 92/387 (23%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            K +L VL V   + G             V +V  + +    +  +    +    Q    
Sbjct: 41  IKFWLGVLIVVLAVSGAYTLFEF----QPVATVNGEPIRRYEYEKTLGDAVSYYEQYGIN 96

Query: 74  VVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
           + + + A     L K++L++++    + Q  +   ++     V   I            F
Sbjct: 97  LYDPKEASFFLELKKQVLNHMIDNKIITQEAKKENIKITPSEVDARIDEIK------KSF 150

Query: 133 SHDV-FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
             +  F   LA++ I+  E  +   + L+   +                           
Sbjct: 151 PSEKDFYEALAKQKISMGELRNIIEQQLTAEALFKKLTS--------------------- 189

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
                            S A +  ++E++K  +  PE   +                   
Sbjct: 190 -------------NVTISEAEVKAYYEEHKKEFVQPEQIHL------------------- 217

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---- 307
                                  ++   ++EA+  ++ LK+GK F  LA+E         
Sbjct: 218 ---------------------RHILVKTEQEANNIYEQLKQGKDFATLAKEYSIDTPTKD 256

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
               LG  SK  +    LA +   L K  +F+  I   FGY I      +PS  +SF EV
Sbjct: 257 KGGDLGWISKASLV-PDLAKAADEL-KDNEFSKPIKSPFGYHIIEKLGTRPSKELSFDEV 314

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEF 394
           K  +  Q+   K ++ +++ +K  +E 
Sbjct: 315 KNTLTAQLLRNKQAQSLEKWFKEKKEQ 341



 Score = 40.7 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 86/252 (34%), Gaps = 34/252 (13%)

Query: 262 EKYFSPEIRTVEQLVFPNQKEA--DEAFQSLKKGKKF-IQLAEEQGKSLSDISLGSFSKE 318
            K  + E +     + P++ +A  DE  +S    K F   LA+++      IS+G   + 
Sbjct: 120 NKIITQEAKKENIKITPSEVDARIDEIKKSFPSEKDFYEALAKQK------ISMGEL-RN 172

Query: 319 YIPDVSLADSIFS-LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
            I     A+++F  L      +     ++          K  F        + I  +  +
Sbjct: 173 IIEQQLTAEALFKKLTSNVTISEAEVKAY------YEEHKKEFVQP-----EQIHLRHIL 221

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
            K  ++    Y++L++    G     +++     SID P  D  G      + + +P   
Sbjct: 222 VKTEQEANNIYEQLKQ----GKDFATLAKEY---SIDTPTKDKGGDLGWISKASLVPDLA 274

Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
           +    +   +               Y  ++   + P+++   +EV   +       K A+
Sbjct: 275 KAADELKDNEFSKPIKSPF-----GYHIIEKLGTRPSKELSFDEVKNTLTAQLLRNKQAQ 329

Query: 498 EVSSKANQLVLE 509
            +     +   +
Sbjct: 330 SLEKWFKEKKEQ 341


>gi|294507423|ref|YP_003571481.1| peptidyl-prolyl cis-trans isomerase D [Salinibacter ruber M8]
 gi|294343751|emb|CBH24529.1| Putative peptidyl-prolyl cis-trans isomerase D [Salinibacter ruber
           M8]
          Length = 691

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/714 (11%), Positives = 217/714 (30%), Gaps = 117/714 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFS---VSGSSTVVSVGRQKVPFSSFI 57
           +  +R+ +      + L +L + F +IW L D+         +  V +V    +    + 
Sbjct: 4   MNTLRQNTG-----VILWILVLSFGIIWTLQDSDVFSAMNQTNRNVATVNGNPIQNEDYQ 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              K++     Q++G  +N +      + ++  + +V+   L Q ++ +G+      V  
Sbjct: 59  RILKRQRQRFQQQMGGDMNPQM--ESRVRERAYNQVVNQELLQQEMKRLGISVTDSEVEA 116

Query: 118 EIA-RSP------LFHGKDNKFSHDVFVS----------------RLAREG--------- 145
            +   +P       F     + ++ +  +                 L R+          
Sbjct: 117 MVFGENPHPVIRRQFADSTGQINYQLLQNMASNPEARTQWIKLEEFLRRQRRQQKMSSLV 176

Query: 146 -----INEKEYIDHYTKMLSRTDVVGMFVGGMRPSN----LLLDQAKRFYFENRSV--DY 194
                ++E +  D+Y +  S      + +   R S+    +     + +Y  NR      
Sbjct: 177 QSTIQVSEADIKDYYRRQNSSASAQYVALRYARVSDDSITVTESDLRDYYDNNREAYKRE 236

Query: 195 IVLNNRHVPAIADPSNAV----------LTQWF----------------EKYKDNYRAPE 228
             +  ++     + +             L   F                + +   YR P+
Sbjct: 237 KTVTLQYATTSKEATAEDSSGIAGDLAGLRADFATTENDSLFLLNNASDQDFSSAYRTPD 296

Query: 229 Y---KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
               +    +            +         +    +    +      ++    +   E
Sbjct: 297 QMNARVADSVYASPEPGRIVGPVFGGGQAHLLKVRDTRPAENDFLHARHILLKTDQADSE 356

Query: 286 AFQSLKKGKK--------FIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
               L+  +         F ++A    + G +     LG F++  + D +  D+ F  A+
Sbjct: 357 VAGRLRAIRDSLEAGAAFFAEMARRYSDDGSASDGGDLGWFARGSMVD-AFEDAAFG-AE 414

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G     +   FGY +  V                D+A  +  ++A+  + +   +L + 
Sbjct: 415 PGTLVGPVRSEFGYHLIRVEARASQAVQV-----ADLAYNLSPSRAT--LSDKESQLGDL 467

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
                         + + + +  V           +       Q L          +   
Sbjct: 468 AYFAEEEGAFEEEAQRLGLSVQEVQVETDQSSVPGIGQGAALSQFLESASN----GTISD 523

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
            + L D  ++  ++    P   R   EV + ++   +  K     + +  + + +     
Sbjct: 524 VIELSD-KFVVAEVTNVTPEGYRSFSEVKSQIRPQVELQKKRAVQTRRMERALAQ----- 577

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYV 572
             F  + + LG  L T + +    +     G +   +  VF             N  +++
Sbjct: 578 NTFEALPEALGTELRTQSDLTYSTSTVPGLGQEPQFVGTVFGLDEGETSGVVAGNNAAFI 637

Query: 573 VFKVTNSKVGPVQE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           V     +   P+ +  + +    L +   + +  + IA LK   ++  + + ++
Sbjct: 638 VKTTQKTTPPPLTDQKRKQLRQRLLKQRRQQVSSNWIAALKEDATIKDNRSQLR 691


>gi|327392985|dbj|BAK10407.1| peptidyl-prolyl cis-trans isomerase D PpiD [Pantoea ananatis
           AJ13355]
          Length = 309

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/321 (17%), Positives = 130/321 (40%), Gaps = 22/321 (6%)

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           +G       PD         L +KG  + VI  S G++IA + +I P       +V+ ++
Sbjct: 1   MGWLEPSTTPD---ELKNAGLKEKGQLSGVIKSSVGFLIARLDDIIPEQVKPLADVRSEV 57

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
           A++++  KA +   +  +++ E  A     + ++  E+   +      +  +D   K++ 
Sbjct: 58  ADEVKQEKAVDAFYKLQQKVSE--AASNDNESLAGAEQASGMKATETGWFSRDDVPKDLD 115

Query: 432 AIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPARDRKLEEVLTDVKKD 489
               K+ +    + G++     +  +   DG     ++I E  P     LE+V   +   
Sbjct: 116 FDAVKQAIFNGGLVGQNGAPGNNSDIISVDGDRAFVLRISEHKPEAVEPLEKVKAQIIDT 175

Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
            K  K  ++  ++A++L+ +  K GK  +D+ K  G +L  +  ++R   +         
Sbjct: 176 LKHDKATQQAKAQADKLLADL-KAGK--QDVLKAAGLTLSASKTVDRNTQD------PVA 226

Query: 550 SQVFSG--PVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLL 603
              F+   P +    + +   +  + V+  V     G  P  + ++ +  +TQ   +   
Sbjct: 227 QAAFNLPQPEDNKPSWGVSEDMQGNVVLVAVDKVSTGTMPQAQINEMVKGVTQNNAQLAF 286

Query: 604 DSVIAYLKSQYSVTVHDNLIQ 624
           ++++  L+ +  +       Q
Sbjct: 287 EALLQNLRKEAKIKYGAAAQQ 307



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 71/246 (28%), Gaps = 30/246 (12%)

Query: 291 KKGKKFIQLA-EEQGKSLSDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGS 345
                   LA  EQ   +     G FS++ +P      ++  +IF+    G      + S
Sbjct: 80  AASNDNESLAGAEQASGMKATETGWFSRDDVPKDLDFDAVKQAIFNGGLVGQNGAPGNNS 139

Query: 346 FGY-------VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
                      +  +S  KP      ++VK  I + ++  KA+++ K    +L   L  G
Sbjct: 140 DIISVDGDRAFVLRISEHKPEAVEPLEKVKAQIIDTLKHDKATQQAKAQADKLLADLKAG 199

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
                     K   + L       ++ +           Q  F +   +D          
Sbjct: 200 KQ-----DVLKAAGLTLSASKTVDRNTQDP-------VAQAAFNLPQPEDNKPSWGVSED 247

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
             G+ + V + +               + +  K V T          L+    KE K   
Sbjct: 248 MQGNVVLVAVDKVSTGTMP-----QAQINEMVKGV-TQNNAQLAFEALLQNLRKEAKIKY 301

Query: 519 DIGKNL 524
                 
Sbjct: 302 GAAAQQ 307


>gi|326798824|ref|YP_004316643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp.
           21]
 gi|326549588|gb|ADZ77973.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp.
           21]
          Length = 701

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 95/679 (13%), Positives = 213/679 (31%), Gaps = 112/679 (16%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           F  S  + V ++  + + ++ F N  +Q +  + Q++G  ++ +       D    +  +
Sbjct: 38  FWASHQNEVGNIDGESISYTDFNNQVEQSINNMRQQMGGNMSPQMTSYAVED--AWNQNL 95

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIAR-------SPLFHGK-DNKFSHDVFVSRLAREGI 146
               LD+ +E IGL      +   +         +  F      +   +     LA    
Sbjct: 96  RRLLLDKELERIGLGVGKNELQDMVTGKNPSPMIAQNFGNPQTGEIDRNQLNQFLANVAK 155

Query: 147 NEK---------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
                        +++       +     +    +  ++L   +      +  +  Y++L
Sbjct: 156 EPANSELSRQWGTFLEAMRDNRLQQKYNNLIQNSVYVTSLEATEDYNQRNKIANFSYVLL 215

Query: 198 NNRHVPAI-ADPSNAVLTQWFEKYKDNYR------------------------APEYKRI 232
           +   +P      ++A    ++ ++K  ++                        A E    
Sbjct: 216 DYASIPDKDIKLTDADYQNYYNEHKAAFKNQMETRSFDYVVFNAQPTAQDTALAKETITK 275

Query: 233 SYILFDVHEKEKKIEISNDELQA----------------------------------EYE 258
                     +    +SN E +                                    YE
Sbjct: 276 LTEELAKSTNDSLFAVSNSEQKRPVSYIKKGTLSPALDSLVFSAAKGSTVGPVYSNGVYE 335

Query: 259 KNK--EKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
             K  +   SP+  T   ++              +AD     + KG  F  LA E G   
Sbjct: 336 SAKILDVRNSPDSVTARHILLNPATEGGVDKAMAKADSIKNLILKGGNFAALAVEFGTDG 395

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              +   LG+F++  +   +  +++F  AK GD   V++  +G  I  V   K    V  
Sbjct: 396 TKDNGGELGTFARGSMI-PAFENAVFD-AKPGDVF-VLNTQYGVHIIKVDAQKGMSKV-- 450

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
             VK  I ++  ++ ++E ++  Y +  +F     S    +   K   + +   D     
Sbjct: 451 --VKAAIIDK-SVSSSNETLRAAYSKASDFFGKANS-QNFAEEAKKAGLTVEHADNITPM 506

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
                    P   +++   F  +     D    L D  Y+  ++    P     LE+V  
Sbjct: 507 QGYLPNLETP--REVIKWAFKAEKGDLTDKVYEL-DNQYVIAKLTNIRPKGQLSLEDVKK 563

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
           +++        A +++ K N    +  +  K+   I + +G +      I   +      
Sbjct: 564 EIEPAVLNKVKATKLAQKLN----DALQGAKSIDQIAQKVGKTPKAEQNIVFANPILPGV 619

Query: 545 GYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTN-SKVGPVQEKDKFISYLTQMMNKD 601
             +   +  VF    + +   PIE      V +VT+      + + D+    + Q + + 
Sbjct: 620 AQENKVVGTVFGLQPKQL-SKPIEGNQGVYVVQVTDFVNPPALDKVDQQKQQVRQQLRQR 678

Query: 602 LLDSVIAYLKSQYSVTVHD 620
             +     L  +  +  + 
Sbjct: 679 ASNQSFQALLDKADIKDNR 697


>gi|315186551|gb|EFU20310.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           thermophila DSM 6578]
          Length = 336

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 128/351 (36%), Gaps = 74/351 (21%)

Query: 45  SVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIE 104
            V  ++VP        ++ +    Q+ G  V+ E  +   L +++LD L+    L Q  +
Sbjct: 49  RVNGEEVPSKEVEREVQRYVAQY-QQYGMEVSPEEEQK--LREQVLDVLIGRLLLLQEAK 105

Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
            +GL  D  +V  +I +   +  +    S + F + LA+ G  E+E+ +  ++      V
Sbjct: 106 RMGLSVDQAQVDAQIEQ---YKLQSG--SEETFKNILAQAGYTEEEFREELSRAFLLQQV 160

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
           V                                    V      S+     ++++  + +
Sbjct: 161 VD---------------------------------EKVTKHLSVSDEEARAYYDENPEQF 187

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             PE  R  +IL  +         S +E +A Y                        +  
Sbjct: 188 EQPEQIRARHILIRLAPDA-----SKEEEEAAY-----------------------AKIH 219

Query: 285 EAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           E  + L +G  F +LA+       + +   LG F K  +   +  ++ F+L +    + V
Sbjct: 220 EVQEKLNQGADFAELAKTYSEGPSAPNGGDLGFFGKGQMV-PAFEEAAFAL-EVNQVSDV 277

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +   +G  +  V++ + +   SF+EVK  +   +   K+SE +    + L+
Sbjct: 278 VRTEYGLHLIQVTDRQEAGKASFEEVKDQLKEMLLQQKSSEAINALVEELK 328



 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 9/135 (6%)

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
              +  E        ++E L  G    E+++       + P     G      +   +P 
Sbjct: 206 ASKEEEEAAYAKIHEVQEKLNQGADFAELAKTYS----EGPSAPNGGDLGFFGKGQMVPA 261

Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
            E+  F +      +++   V   +     +Q+ +   A     EEV   +K+     K+
Sbjct: 262 FEEAAFAL-----EVNQVSDVVRTEYGLHLIQVTDRQEAGKASFEEVKDQLKEMLLQQKS 316

Query: 496 AEEVSSKANQLVLEY 510
           +E +++   +L  + 
Sbjct: 317 SEAINALVEELKGKA 331


>gi|256419787|ref|YP_003120440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chitinophaga
           pinensis DSM 2588]
 gi|256034695|gb|ACU58239.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chitinophaga
           pinensis DSM 2588]
          Length = 702

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 105/726 (14%), Positives = 215/726 (29%), Gaps = 136/726 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPF----LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           ++ IR      +  + + +  V F      +G +  +     S+TV  V   ++ F+ + 
Sbjct: 4   IQKIRDKYAVVIV-VVICLAIVSFLLQDAFFGKNSLIRR---STTVGKVNGTELEFTEYQ 59

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              K     +    G V       +    +      +S   L    E +GL      +  
Sbjct: 60  QMIKNAEDRMRMSNGAV---NEQITQQARESAWTKFLSDNILSAQYEKLGLAVTEEEIKD 116

Query: 118 EIAR-------SPLFHGK-DNKFSHDVFVSRLA----------REGINEKEYIDHYTKML 159
           +          +  F  +   KF        LA          R G+   +  ++  +  
Sbjct: 117 QFTGKNPSPIITQQFTDEKTGKFDRARMQQVLASISQDKTGQMRAGL--LQLEEYIAQSR 174

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFE 218
                + +    +     L ++  +   +  S+ Y+ +    +       S++ L  +  
Sbjct: 175 VSEKYLSLIKQAVYYPKWLAEKQIQDNAQTASISYVSVPYASIADSTVKVSDSELNSFIN 234

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKI---------------EISNDELQAE------- 256
            +K+ ++  E +++ Y+ F+V                       ISN+++ A        
Sbjct: 235 SHKELFKVEESRKVDYLAFNVIPSAADTAATLKVLMDAKQELDTISNNDIAAFINRNSDL 294

Query: 257 ---------------------------------------YEKNKEKYFSPEIRTVEQLVF 277
                                                  Y K  ++   P+   V  ++ 
Sbjct: 295 PYYDSYISKSALMVPQKDTLVTLPVGAVFGPYYDNNLIVYAKMIDRKTLPDSVKVRHILV 354

Query: 278 PNQ-------------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIP 321
             Q                D   +++K G  F  L E+    +     G     +     
Sbjct: 355 ATQNQQGGGLPDSLAKARIDSIERAVKGGADFKALVEQYTDDVRSKPTGGEYDVTPSTDF 414

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK--PSFTVSFQEVKKDIANQMRITK 379
                D  F+L K      V+  + GY +  V   K   S        K    ++   +K
Sbjct: 415 LKEFKD--FALEKGKGAIGVVKTAAGYHLIEVLEQKNIGSAVKLAYLAKPVSPSRETDSK 472

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           A  +  E   +  +      ++ E     K ++ +L  +DF         +  I    +L
Sbjct: 473 AYAEANEFASKNRDAKTFEKTIQE-KGLNKRIADNLRPMDFV--------IPGIGQAREL 523

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           +   +  D     +  V   D +Y+   +          LE+V   V+ + +  K     
Sbjct: 524 VRWAYDSDKGAVSN--VFTFDNTYVVAVLTTVRAEGTAPLEDVRPSVEAEVRKQK----- 576

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPV 557
             KA Q++ E  K   +  D+ K         + I          G++   +   F+   
Sbjct: 577 --KAAQII-EKIKSPASLADVSKATNQPEQKADGIGFGTPFVASMGFEPRVVGAAFNKAW 633

Query: 558 EMVK-CFPIENGLSYVVFKVTNSKVGPVQEKDKFIS-YLTQMMNKDLLDSVIAYLKSQYS 615
              K   PIE      V KV + + G   +    +S    Q M   L   +   LK    
Sbjct: 634 GTAKVSAPIEGNAGVYVLKVDSYQPGQGGQDPASVSRAYEQSMLSALDGQLFTVLKKLSK 693

Query: 616 VTVHDN 621
           +  + +
Sbjct: 694 IEDNRS 699


>gi|296131722|ref|YP_003638969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola sp. JR]
 gi|296030300|gb|ADG81068.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola potens
           JR]
          Length = 352

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/392 (15%), Positives = 123/392 (31%), Gaps = 85/392 (21%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           KI  + L + F +        +  G+ TV  V  +K+          +      Q+ G  
Sbjct: 6   KILGLALILVFAVV------VAGCGAKTVAEVNGEKITQEQLDKRVNKMKLAYEQQ-GAS 58

Query: 75  VNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
              E+ + +   + K+ LD ++    + Q  E  G+      V         F     +F
Sbjct: 59  FEGEQGKQMLEAIKKQTLDQMIDQLLIKQAAEKEGVAPSDAEVQKR------FDEIKKRF 112

Query: 133 SHDV-FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
             +  F   L      E+E  ++  +      +                           
Sbjct: 113 KSEKEFEDALKNYNYTEEELKEYIAQQAMTDALFQKVT---------------------- 150

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
                            +   + +++E+ KD+++ PE  +  +IL       +K+     
Sbjct: 151 ------------KDVKVTEEDMKKYYEERKDSFKEPEKIKARHILIKFDTANEKVG---- 194

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
                                 +     +K A+E    L  G  F +LA+E+ +     +
Sbjct: 195 ----------------------RKEEEAKKMAEELIAKLNNGADFAELAKEKSEDPGSKN 232

Query: 312 LGSFSKEYI---------PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
            G   K+ +               D+ F+L K       +   FGY I  V + KP    
Sbjct: 233 DGGLLKDPMGSDYFARGVMVKEFDDAAFALKKGEITKKPVKTQFGYHIIKVEDKKPEKQK 292

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +++E K+ I   +  T+  E   +  + L++ 
Sbjct: 293 TYEEAKEQIKRDLPNTRKQEVFNKYIEGLKQK 324


>gi|237750031|ref|ZP_04580511.1| WbnF [Helicobacter bilis ATCC 43879]
 gi|229374442|gb|EEO24833.1| WbnF [Helicobacter bilis ATCC 43879]
          Length = 543

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/426 (15%), Positives = 161/426 (37%), Gaps = 43/426 (10%)

Query: 1   MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           MLE ++K  +  V  ++   L ++F   + WG     FS   S +V  VG   +    + 
Sbjct: 1   MLEWMQKHKKYLVITVWVSALALVFASMVEWGGGG--FSAVSSDSVAKVGDIYISRQEYQ 58

Query: 58  NSWKQELGMISQKIGFVVNSERAR-SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             + +    +++ +  V   +  +    ++++    LV    L+   +DIG+      + 
Sbjct: 59  RKYNEIYDNVAEYMRQVGLPDDGKPMPEIEQEAFRILVQEKLLEMLAKDIGVSITSNEIL 118

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             +  +P F    + F+ + +   L     N  +Y     K L +  +    +  +    
Sbjct: 119 EALLNTPEFQDATHTFNKEQYEKLLQANRWNTADYEAFVAKALLQEKMQNFPLAPVSTLE 178

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
                +     +   +  +  ++    A+   +++ +  ++E+ K+ Y  P   +I+Y+ 
Sbjct: 179 TNAFMSAGKIKDVAELRLLHKDSVLKNAVLQTADSEIRSYWERNKEKYYKPASYKIAYMA 238

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---------DEAF 287
            D+     +I  +   L+  Y+ N+ KY +       + V  + ++A             
Sbjct: 239 LDM----GEINTNRAMLEKFYKDNERKYKNLTFEQALEEVEADYRKAVLGFASSYMATIS 294

Query: 288 QSLKKGKKFIQLAEEQG-KSLSDISLGSFSKEYIPDVSLADSI------FSL-------- 332
           +++ +  K +Q+       ++   S+    K +  D+ + D        +SL        
Sbjct: 295 KNIAENNKDLQIKTSNVITTMESQSIALLQKHFDGDLDIKDIALQDIPLYSLQLNDDGSD 354

Query: 333 ---------AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
                    + KG   P+ +    ++I +++   P   +SF+  K+  +  +   K +++
Sbjct: 355 HSALITAVSSGKGLLAPLEYSKDHWIIPYITEKIPKQALSFELAKELASRDLMAEKQNDE 414

Query: 384 VKEDYK 389
            K+   
Sbjct: 415 FKKMAY 420


>gi|167627763|ref|YP_001678263.1| hypothetical protein Fphi_1536 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597764|gb|ABZ87762.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 477

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/479 (15%), Positives = 170/479 (35%), Gaps = 49/479 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59
           ML+      +     I ++ +   F+I G++    ++  S S V  VG  ++    F   
Sbjct: 1   MLQSFNDRLKGPFTWIIIISISFIFVISGMTFFFTNIGSSRSYVAKVGDNEIGLQQFQQY 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +                  A +    + +LD +++   +    +   +      +   I
Sbjct: 61  AQN-----------------ATTESQKRAVLDQMINQYLILADAQRHNIVVSKLALQSAI 103

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
             +P+F  KD KFS D     +   G +N        ++ +  T +       +  ++  
Sbjct: 104 FTNPIFFDKDGKFSADKLKQVVEYIGGMN--RLEQILSQNIQATMIPKTIADTVITTDYE 161

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
             Q    Y  N+ ++Y+ L+     +   PS   L  ++  +K++Y  P  K ISY +  
Sbjct: 162 KKQLASIYLVNKKIEYLKLSPVDFQSQVKPSQQDLESYYNAHKNDYINPAQKNISYFIIS 221

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIR-TVEQLVFPNQKEADEAFQSLKKGKK-- 295
             +   K  I+NDELQ  YE ++E +   +             + A E F +  +     
Sbjct: 222 KEDFVSKNNINNDELQEYYETHRELFKDFDNNTKASIQKIIQNRRALEQFNNYSQNIDSV 281

Query: 296 -FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            F +L +  GK+    +    + +     +L ++ F +      +  +  +   ++  V 
Sbjct: 282 KFAELEKTLGKA---KTASIVNNDESTISALTNAQFFVDNDKYSSIPLA-NNELLVYQVD 337

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
             + +      +VK  ++      K+ +   E  ++L         +D++   +K+    
Sbjct: 338 KSQQASQQKLADVKDKVSKAFVAQKSQQLAIEKSQKL---------LDDLVSNKKVSISF 388

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
                 +   +  KE             +F  +   ++ ++    +G     ++ +  P
Sbjct: 389 KQATVDSDSKLFSKEFNDY--------VMFNTN---NQYNSYQSDNGDIYIYKVTKVEP 436



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 87/252 (34%), Gaps = 33/252 (13%)

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
           K  I   ++  +A E+     + + + +        + + +    ++      +      
Sbjct: 255 KASIQKIIQNRRALEQFNNYSQNI-DSVKFAELEKTLGKAKTASIVNNDESTIS------ 307

Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
                      L    F  D+   K  ++ L +   +  Q+ +S  A  +KL +V   V 
Sbjct: 308 ----------ALTNAQFFVDN--DKYSSIPLANNELLVYQVDKSQQASQQKLADVKDKVS 355

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
           K +   K+ +    K+ +L+ +            K +  S         +D+++K F  +
Sbjct: 356 KAFVAQKSQQLAIEKSQKLLDDLVSN--------KKVSISFKQAT----VDSDSKLFSKE 403

Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
               V          +  +NG  Y ++KVT  +    +      S +     ++ L+  +
Sbjct: 404 FNDYVMFNTNNQYNSYQSDNGDIY-IYKVTKVEPLDSKNAK-LPSQVLNATKEEELNFYL 461

Query: 608 AYLKSQYSVTVH 619
             +K +  V V+
Sbjct: 462 QVVKQEVPVKVN 473


>gi|302337922|ref|YP_003803128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635107|gb|ADK80534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 357

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 61/370 (16%), Positives = 123/370 (33%), Gaps = 76/370 (20%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
            S S     V    +P   +             +    ++    +   L  ++L++L+  
Sbjct: 56  ASPSDNAAIVNGVAIPLDRYQQQLSVIQQQYLMQ---GISVPEEQMAELKGQVLESLIDQ 112

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHY 155
             L Q  +  G EAD  +V  ++ +         +F S + +   LA++GI+E++++   
Sbjct: 113 ELLAQEAKGQGYEADQTKVDQQLQQIK------GQFPSEEQYYQALAQQGISEQDFLAEL 166

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            K L     V                                      +    +      
Sbjct: 167 KKSLVVQQFVS---------------------------------DRFASQVAVTEEDSKT 193

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +++     +  PE  R S+ILF V E     ++                           
Sbjct: 194 YYDDNPSYFVQPERVRASHILFSVAEDASDQDV--------------------------- 226

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSL 332
               + +A+ A +  K G++F  LA E      +     LG F +  +      D+ FS+
Sbjct: 227 -AAAKTKAESALERYKNGEEFSDLARELSEGPSASQGGDLGFFGRNQMVKP-FEDAAFSM 284

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            K G+ +  +   FG+ +  ++      T+ F +VK  I++ +   +  E VK      +
Sbjct: 285 -KVGEVSDPVRTKFGFHLIRLTARNEKGTLPFDQVKPQISDHLYKLRLGELVKAFLDEQK 343

Query: 393 EFLALGTSMD 402
           E   +   +D
Sbjct: 344 EKSEINRLLD 353


>gi|241668327|ref|ZP_04755905.1| hypothetical protein FphipA2_06151 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876860|ref|ZP_05249570.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842881|gb|EET21295.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 477

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 73/479 (15%), Positives = 170/479 (35%), Gaps = 49/479 (10%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59
           ML+      +     I ++ +   F+I G++    ++  S S V  VG  ++    F   
Sbjct: 1   MLQSFNDRLKGPFTWIIIISISFIFVISGMTFFFTNIGSSRSYVAKVGDNEIGLQQFQQY 60

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +                  A +    + +LD +++   +    +   +      +   I
Sbjct: 61  AQN-----------------ATTESQKRAVLDQMINQYLILADAQRHNIVVSKLALQSAI 103

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
             +P+F  KD KFS D     +   G +N        ++ +  T +       +  ++  
Sbjct: 104 FTNPMFFDKDGKFSADKLKQVVEYIGGMN--RLEQILSQNIQATMIPKTIADTVITTDYE 161

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
             Q    Y  N+ ++Y+ L+     +   P+   L  ++  +K++Y  P  K ISY +  
Sbjct: 162 KKQLASIYLVNKKIEYLKLSPVDFQSQVKPNQQDLESYYNAHKNDYINPAQKNISYFIIS 221

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIR-TVEQLVFPNQKEADEAFQSLKKGKK-- 295
             +   K  I+NDELQ  YE ++E +   +             + A E F +  +     
Sbjct: 222 KEDFMSKNNINNDELQEYYETHRELFKDFDNNTKASIQKIIQNRRALEQFNNYSQNIDSV 281

Query: 296 -FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            F +L +  GK+    +    + +     +L ++ F +      +  +  +   ++  V 
Sbjct: 282 KFAELEKTLGKA---KTASIVNNDESTISALTNAQFFVDNDKYSSIPLA-NNELLVYQVD 337

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
             + +      +VK  ++      K+ +   E  ++L         +D++   +K+    
Sbjct: 338 KSQQASQQKLADVKDKVSKAFVAQKSQQLAIEKSQKL---------LDDLVSNKKVSISF 388

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
                 +   +  KE             +F  +   ++ ++    +G     ++ +  P
Sbjct: 389 KQATVDSNSKLFSKEFNDY--------VMFNTN---NQYNSYQANNGDIYIYKVTKVEP 436



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 85/252 (33%), Gaps = 33/252 (13%)

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
           K  I   ++  +A E+     + + + +        + + +    ++      +      
Sbjct: 255 KASIQKIIQNRRALEQFNNYSQNI-DSVKFAELEKTLGKAKTASIVNNDESTIS------ 307

Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
                      L    F  D+   K  ++ L +   +  Q+ +S  A  +KL +V   V 
Sbjct: 308 ----------ALTNAQFFVDN--DKYSSIPLANNELLVYQVDKSQQASQQKLADVKDKVS 355

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
           K +   K+ +    K+ +L+ +            K +  S         +D+ +K F  +
Sbjct: 356 KAFVAQKSQQLAIEKSQKLLDDLVSN--------KKVSISFKQAT----VDSNSKLFSKE 403

Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
               V          +   NG  Y ++KVT  +    +      S +     ++ L+  +
Sbjct: 404 FNDYVMFNTNNQYNSYQANNGDIY-IYKVTKVEPLDSKNAK-LPSQVLNATKEEELNFYL 461

Query: 608 AYLKSQYSVTVH 619
             +K +  V V+
Sbjct: 462 QVVKQEVPVKVN 473


>gi|149277612|ref|ZP_01883753.1| peptidylprolyl cis-trans isomerase [Pedobacter sp. BAL39]
 gi|149231845|gb|EDM37223.1| peptidylprolyl cis-trans isomerase [Pedobacter sp. BAL39]
          Length = 695

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 95/717 (13%), Positives = 220/717 (30%), Gaps = 124/717 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL-----FSVSGSSTVVSVGRQKVPFSSF 56
           +  +R  +      I +  +    + + + DA+     F       V S+  + +    F
Sbjct: 1   MTFLRNRA----GYILIGAIGFAIVAFLVGDAINVGKPFWAESQKVVGSIDGEDINIDEF 56

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
               +Q L    Q+ G   N E+  ++ +D ++ +  V+   L +    +GL      ++
Sbjct: 57  GPKVEQSLAQFKQQYGGSGN-EQMSAMAVD-QVWNGEVANVLLGKEYSRLGLNVSGDELF 114

Query: 117 GEIAR-------SPLFHGK-DNKFSHDVFVSRLAREGINE------KEYIDHYTKMLSRT 162
             +            F      + +    ++ L ++  N               K   + 
Sbjct: 115 DLLQGKNPSPLIVQYFGNPQTGEVNRAEVLNSLKQQSKNPQLKQQWDLLQTEIEKQALQQ 174

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYK 221
               +    +  + L  +   +   +  +  Y+ L+   +P A   P+ +  + ++ + K
Sbjct: 175 KYANLIRSSVYVTTLEANDEYQNRNKLANFRYVGLDYTSIPDANVKPTESDFSDFYNENK 234

Query: 222 DNYRAP------EYKRISYILFDVHEKEKKIEI--------------------SNDELQA 255
             +  P      EY   +           K ++                    S+ ++  
Sbjct: 235 QRFNNPTETRSFEYVSFNISPTAADSAAIKAQVEKLAADFKAAPSDSLFAALNSDVKVPY 294

Query: 256 EYE----------------------------------KNKEKYFSPEIRTVEQLVFPNQK 281
            Y                                   K  +  FSP+      ++    K
Sbjct: 295 TYVTKGKLDPAVDSAVFNLPAGSYYGPVLSGNSYKLVKVADTRFSPDSVKASHILIDAAK 354

Query: 282 -----EADEAFQSLK----KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSI 329
                +A +   SLK     G  F  LA +     S      LG+FS+  +      ++ 
Sbjct: 355 LGGVDKATKLADSLKTLVQNGANFATLAAQYSVDGSKDKGGELGTFSRGQMV-AEFENAA 413

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSN-IKPSFTVSFQEVKKDIA-NQMRITKASEKVKED 387
           F+  K GD   V+   FG  +  +   +  S  V    ++K +A +      A +K    
Sbjct: 414 FN-GKAGDL-KVVTSQFGVHLIKIEKQVGSSKVVKLAYIEKSLAPSNKTKDAAYKKASNF 471

Query: 388 YKRLEEFLALGTSMDEISRREK-IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
              +++      +  E++++    V +   +    G          +    +L+   +  
Sbjct: 472 LAEVKD-----NNFAELAQKLGYTVGVADKITPTQGF------APGLANPRKLIKDAYAA 520

Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
           D         A+ D +++  ++          LE+V  D+         A++++ K    
Sbjct: 521 DKGDVLKEIYAM-DNAFVIARVTAVKAKGLLSLEDVKKDITPMVINAVKAKQLTEK---- 575

Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFP 564
           + +  +       + + LG    +   I   +        +   +  +F      +   P
Sbjct: 576 INKALQGASTIDQVAQKLGKPATSVPNIVFANPIIPGAAQENKLVGAIFGSAKGKL-SKP 634

Query: 565 IENGLSYVVFKVTN-SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           ++      VF V   S   P+    K    + Q   +  L S    L+ +  +  + 
Sbjct: 635 VDGQQGVYVFVVDGFSNPAPLANTYKQKEAMMQASGQRTLGSAFQALQDKADIKDNR 691


>gi|195953257|ref|YP_002121547.1| hypothetical protein HY04AAS1_0882 [Hydrogenobaculum sp. Y04AAS1]
 gi|195932869|gb|ACG57569.1| conserved hypothetical protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 436

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 126/397 (31%), Gaps = 81/397 (20%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV---SGSSTVVSVGRQKVPFSSFI 57
           M E IRK   T+   I   ++   F +W  +    +    S  + +       +  + F 
Sbjct: 1   MFEFIRKHKETFA--ILSGIVTAAFFLWNFAAGNITSLFHSSENCIAKANGDCISIADFR 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
                            + + +  +  L ++IL++L+    L +  +  G       V  
Sbjct: 59  R--------------VAMGTNQQMTPILKQEILNSLIDDDLLYEQAKKEGFLVSDKEVAD 104

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I++ P F   D KF+ D + + LA  G   + Y  +  K L+              S++
Sbjct: 105 IISQDPSFQ-VDGKFNFDRYKAVLAEAGYTPETYESYIKKQLTIQKYTLFVTNASYVSDI 163

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            L+ A        S    +++   V     P+   +  ++ K+KD ++      I Y   
Sbjct: 164 ELNAANMINNTLLSGKAYIIDPNSVNINYTPTEQEIEDYYNKHKDEFKIVNPSSIIYWET 223

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                                                    ++ +A E + +LK GK   
Sbjct: 224 T----------------------------------------DKNKAREIYMALKSGK--- 240

Query: 298 QLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY--VIAHVS 354
                       I  G  +  E     +    + +L  +    PV+ G+ G    I    
Sbjct: 241 ------------IPPGFKAFDEKTMSKTFGAVVKALNPQN---PVLVGNVGNNIYIFTYQ 285

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + K +  +   + K  +   + + K    +K+  K +
Sbjct: 286 STKNAAIMPLSQAKNQVIQDLIMEKKILALKDFAKNI 322



 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 95/252 (37%), Gaps = 17/252 (6%)

Query: 381 SEKVKEDYKRLEE--FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
            +++++ Y + ++   +   +S+      +K  + ++ +   +GK   G       + E+
Sbjct: 196 EQEIEDYYNKHKDEFKIVNPSSIIYWETTDKNKAREIYMALKSGKIPPG----FKAFDEK 251

Query: 439 LLFRVFGKD-DPLSKDHTVALPD--GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
            + + FG     L+  + V + +   +      + +  A    L +    V +D    K 
Sbjct: 252 TMSKTFGAVVKALNPQNPVLVGNVGNNIYIFTYQSTKNAAIMPLSQAKNQVIQDLIMEKK 311

Query: 496 AEEVSSKANQLVLEY-SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
              +   A  +     +K+  + + +  N    L   + +  + + +        +  F 
Sbjct: 312 ILALKDFAKNIYNNLKAKKPVSIKPVAFN-NLPLSKISTMVDIKSSDIVPMVTEKTPAFF 370

Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
           GP      +   +G +YV+ +V +  +   Q  ++    L  +    L++ +I  L++  
Sbjct: 371 GP------YVSASGSAYVIIEVDSRSIKNQQNPEQTFVQLISLKANVLMNYLIKDLRAHA 424

Query: 615 SVTVHDNLIQRY 626
            + ++ +L    
Sbjct: 425 KIDINKSLYNNL 436


>gi|183179758|ref|ZP_02957969.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MZO-3]
 gi|183013169|gb|EDT88469.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MZO-3]
          Length = 157

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 6/156 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R+   +   KI L ++ + F+  G+ + L S  G++    VG  ++    F  ++
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           + E   +  ++G   +   ++ A      K +LD +V+   L+Q    +GL     +V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRLSDEQVRQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
            I   P F  +   F    +  RL    +  + Y D
Sbjct: 120 LILEIPQFQSQ-GVFDSAAY-QRLCVAQLTPEMYAD 153


>gi|332798185|ref|YP_004459684.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tepidanaerobacter
           sp. Re1]
 gi|332695920|gb|AEE90377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tepidanaerobacter
           sp. Re1]
          Length = 320

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 55/389 (14%), Positives = 121/389 (31%), Gaps = 95/389 (24%)

Query: 14  AKIFLVVLFVPFLIWG------LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
            KI +++L     + G      +      + G   +  V  + +  S +     Q    +
Sbjct: 4   IKISILLLICVIAMAGCQNVEKVETQGKIIDGKEVIAKVNDELILKSDYDRQVLQVKSAL 63

Query: 68  SQKIGFVVNSERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
               G   +++  +     + +K+L+++++   + Q  E   +          I+    +
Sbjct: 64  EAN-GQDFSTDEGKKVLKEIREKVLESMINDQLILQQAEKDNITLGEKEFKQAISDLEQY 122

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
           HG  +          L ++ ++   +     + L                          
Sbjct: 123 HGGKDALDK-----YLEQQELDRSSFEKLVKEQLVINQFKEKLTS--------------- 162

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
                                  ++  + +++E  K  +  P                  
Sbjct: 163 -------------------DIKITDEEVKKFYEDNKTMFELP------------------ 185

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
                               +PEIR    ++   + EA +    +K G  F  LA++  K
Sbjct: 186 --------------------APEIR-ASHILVDTENEAKKILAEIKAGGDFAALAKDYSK 224

Query: 306 SLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     LG FSK  + D     + F+L K G+ + V+  +FGY I  V+  +   +
Sbjct: 225 DPGSKELGGDLGYFSKGKM-DPEFEKAAFAL-KPGEISDVVKTTFGYHIIKVTGER--TS 280

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +SF + K  I + +  +K  E+  +    
Sbjct: 281 LSFDDAKDYIKSNLENSKKEEEFNKYLDE 309


>gi|315648234|ref|ZP_07901335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
           V453]
 gi|315276880|gb|EFU40223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
           V453]
          Length = 399

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/416 (14%), Positives = 135/416 (32%), Gaps = 126/416 (30%)

Query: 7   KASRTWV-------AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
             S+ W+       A + +V++  PF            SG+  V  V   K+   +  N 
Sbjct: 90  NGSKGWMIASLVLAAALIVVLIVPPFA---------KGSGNEAVAKVNDVKITKDTLYN- 139

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
                             E   + G  K+ ++++++   + Q +    +      V  E+
Sbjct: 140 ------------------ELVEAGG--KQTVNSMITEELIKQELAKQSITVTDAEVNEEV 179

Query: 120 ARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
                       F S D F   L + G+  ++        +    ++G            
Sbjct: 180 DALKA------SFPSEDQFNMALQQSGMTLEDLKGQTKTQVELKKLMG------------ 221

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                                         ++  +   +++ K+++  PE  R S     
Sbjct: 222 -------------------------DKIKVTDEEIKTIYDQNKESFATPEQVRAS----- 251

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                                               ++   ++EADE  + LK G  F  
Sbjct: 252 -----------------------------------HILVETKEEADEIVKQLKDGADFAA 276

Query: 299 LAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +A+E+ +     +   L  F +  + D +  ++ F L KK + +  +  SFGY I  +++
Sbjct: 277 IAKEKNQDATKDTGGDLDFFGRGEM-DPAFEEAAFKL-KKDEISDPVKSSFGYHIIKLTD 334

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            K +   + ++ K +I  Q+   K  ++     + L++   +  +++E++  +   
Sbjct: 335 RKEATNPTLEDKKVEIRKQLENQKVYQESSAYIQELKDKATITNTLEEVAPADPAT 390


>gi|325294382|ref|YP_004280896.1| hypothetical protein Dester_0180 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064830|gb|ADY72837.1| hypothetical protein Dester_0180 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 440

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 124/397 (31%), Gaps = 70/397 (17%)

Query: 1   MLEIIRKASRTW------VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS 54
           ML  IRK  R +      VA  F+  +   FL+WG      +    S V +V  + +   
Sbjct: 1   MLSKIRKNMRAFSLPLWIVAASFVGTI---FLVWGKGS--LTGPSGSEVATVNGEPIDLI 55

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            F   + Q    + Q+ G     +      +    L  L++   + +  +  G++     
Sbjct: 56  EFNREYNQLTNQLQQQFGENY-RKLFPDKEIKIAALQRLINRKLVLEEAKKEGIQVSDWA 114

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V   I   P    KD KFS +++   L    ++ K + D   + L    ++ +       
Sbjct: 115 VAKRIRSFPFLQ-KDGKFSEELYKEFLKANRLSPKVFEDKIREDLLIEKIMAVIDKAPSV 173

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           +   L    R  F  R   Y +   +        S   L +++ +    ++  E     Y
Sbjct: 174 TTFELQNLYRKTFGKREFKYKLFLKKDY--KPSISEKELREFYRENISQFK--EKTGKKY 229

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
            L    +  K  + S    +  Y                                L K +
Sbjct: 230 FLI---KIPKSQKDSEGLARKVYN----------------------------LAKLGKVE 258

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           K                L  F  + + D  L    F     G ++     ++ YV     
Sbjct: 259 K----------------LNDFHPQQVNDKKLISEKFKDKNFGFYSD--ESNY-YVFFKKE 299

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             K      F+ VKKDI   ++  KA E  K+  +  
Sbjct: 300 GEKA---KPFETVKKDIEKTLKEKKAVELAKKSAEEF 333



 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 87/263 (33%), Gaps = 28/263 (10%)

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV---SIDLPLVDFAGK 423
           +KKD    +   +  E  +E+  + +E       + +I + +K     +  +  +   GK
Sbjct: 197 LKKDYKPSISEKELREFYRENISQFKEKTGKKYFLIKIPKSQKDSEGLARKVYNLAKLGK 256

Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
             K  +       ++ L     KD         +     Y++ + +     + +  E V 
Sbjct: 257 VEKLNDFHPQQVNDKKLISEKFKDKNFGFYSDES---NYYVFFKKEG---EKAKPFETVK 310

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
            D++K  K  K  E     A + + +  +                  T  ++R      F
Sbjct: 311 KDIEKTLKEKKAVELAKKSAEEFLKKGLE--------------PKEKTKPLDRDQFFEMF 356

Query: 544 FGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMN 599
              +   I  +FS          + NG       +T+   +    ++ +K   ++     
Sbjct: 357 KPINPQEIENIFSSKKGKRFLLVLTNGYGIF-EPITDLKVEKMEKEKIEKLKQFILDAKK 415

Query: 600 KDLLDSVIAYLKSQYSVTVHDNL 622
           +    + +  L+ + ++ V++  
Sbjct: 416 QSDYQNFLNLLRQKANIKVNEKF 438


>gi|289549224|ref|YP_003474212.1| hypothetical protein Thal_1456 [Thermocrinis albus DSM 14484]
 gi|289182841|gb|ADC90085.1| hypothetical protein Thal_1456 [Thermocrinis albus DSM 14484]
          Length = 444

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 133/409 (32%), Gaps = 74/409 (18%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW-------GLSDALFSVSGSSTVVSVGRQKVPF 53
           M   I++  +  V  +      V F  +        + D L      + V  V    +  
Sbjct: 1   MFSFIQRHRKFLVVTV----SVVSFAFFLWLFLAGSVQDILR--GKRACVAVVNGTCISL 54

Query: 54  SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
                 ++ EL   SQ               + +++LD+L+    L Q   ++G  A   
Sbjct: 55  RD----YRMELLPYSQ-----FLKNEEMEGMIKEQVLDSLIVRELLYQKALEMGFVASDE 105

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
            V   I   P F  +   FS   +   L R  +   +Y ++  KMLS   +V      + 
Sbjct: 106 EVIDTIKSDPTFQ-EGGVFSASKYREVLERNNLEPAQYEEYLKKMLSIQKLVSFISNSVY 164

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            +          Y    +    ++    V    +P++A L  ++ ++++ ++ PE + + 
Sbjct: 165 ITEKEKQANLLPYTTLLTGKLYLITPDSVKISYEPTDAELLNYYHQHREEFKRPEKRVVR 224

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
                            DE    Y + K        R V       Q+EA+         
Sbjct: 225 L----------WETPQRDEALNIYNQLKSSKVPTGYREV----ILPQQEAE--------- 261

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
                        LS +     ++    +       +++ K GD          +V+  +
Sbjct: 262 -------------LSPVLRAEITRLSSKEP------YTVTKDGD---------KFVVLWL 293

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            + +PS    F  VK  I   +   K  EK+++  +   + L  G  +D
Sbjct: 294 YSWEPSGYEDFNNVKDKIKQLLVQQKRLEKLQDVAQSAYKDLKEGKQID 342



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 79/217 (36%), Gaps = 14/217 (6%)

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL---SKDHTVALPDGSYMWVQI 468
           ++++     + K   G     +P +E  L  V   +       + +TV      ++ + +
Sbjct: 234 ALNIYNQLKSSKVPTGYREVILPQQEAELSPVLRAEITRLSSKEPYTVTKDGDKFVVLWL 293

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
               P+       V   +K+     K  E++   A     +  KEGK             
Sbjct: 294 YSWEPSGYEDFNNVKDKIKQLLVQQKRLEKLQDVAQSAYKDL-KEGKQIDYRYLAF---- 348

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
            +   I+++ +  K    D +  + S    +   + I  G  Y V K+ +     + +K 
Sbjct: 349 -SDTPISQLASLMKIPQEDLVKLLVS-KETVFGPYAIAQG--YAVLKIESKTTKSLDDKQ 404

Query: 589 K--FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           +   I  +  +    +L+  +  LK +  +T++ +LI
Sbjct: 405 QKDLIKDILSLKTDSVLNYYLESLKKRAKITINRDLI 441


>gi|126662464|ref|ZP_01733463.1| peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium BAL38]
 gi|126625843|gb|EAZ96532.1| peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium BAL38]
          Length = 685

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 89/717 (12%), Positives = 222/717 (30%), Gaps = 134/717 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L  IR+  R++   I + +    F++  +  +    +G++ V SV    +    F+ +  
Sbjct: 4   LSKIRQ--RSFFLIIIIALALFSFVLADVIQSGTFGTGANDVGSVNGNDIEAQQFMQNV- 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
                + +K G   ++ +A +   ++++         L +  + +GL+    ++   I  
Sbjct: 61  ----AMIEKQGQGTSTTQAMNSAWEQEV-----RKIILTEEFDKLGLKIGSEQLINVIKQ 111

Query: 120 ----ARSPLFHGKDNKFSHDVFVSRL--------AREGINEKEYIDHYTKMLSRTDVVGM 167
               A++P F     +F  + F   L          + +  KE+  +  K         M
Sbjct: 112 NPNLAQNPQFLNAAGQFDENKFKESLKGIKNAPDQTQWLQWKEFEKNIEKYAVEQMYNTM 171

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRA 226
              G+  +            +    DY+ +    V       S++ +  + +K    Y++
Sbjct: 172 IKSGVYTTKAEGKFQYTLENDKVDFDYVTVAFSTVNDDEVKVSDSEIIDFMKKSPKKYKS 231

Query: 227 PEYKRISYILFDVHEKEKKIE-----------------------------------ISND 251
                I ++L +    ++  +                                   ++  
Sbjct: 232 DNTSSIEFVLVENKPSKEDEQAMLSSIGDVKVKFDSVVNVGEFVNANSDIKFDSTYVTKK 291

Query: 252 ELQAEYEKNKEKY-----------------------FSPEIRTVEQLVFP---------- 278
           +L  +Y++                             +        ++            
Sbjct: 292 DLPLDYQEQLFNLPVGGVYGPYVFNGHQCISRMISKKANASAKASHILLAYKGAPQSSAT 351

Query: 279 -NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADS 328
             ++EA     +L        + F  LA          + G      +   +      D 
Sbjct: 352 RTKEEAQALANNLLAQAKANPENFAVLAMANSDDPGSKNNGGEYDNITPGQMV-PQFNDF 410

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-EKVKED 387
           +F+    G    V+   +G+ +  V +   S  +        +A +++ + A+ + +   
Sbjct: 411 VFN-NVIGSI-GVVETDYGFHVIKVMDKYNSVLM------GTVAQKIQPSDATIDAIYTK 462

Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
             +LE      +    I+++  +  +  P  +  G D   + V  +  + +++   F KD
Sbjct: 463 ASQLEADANENSDFAAIAKKAGLEVV--PATNLKGSD---EYVQGVGSQREIVRWSFNKD 517

Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
             +       +P G ++  ++K+   +    ++     V+   K  K AE +  K N   
Sbjct: 518 TEIGDVKRFEVPQG-FVIAKLKDKNESGLLPIDIARQSVEVLIKNQKKAEIIKKKMN--- 573

Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMV-KCFP 564
                 G +   + +  GAS+     +          G +   I + F        +   
Sbjct: 574 ------GTSLEAVAQKSGASVQPATGVTLKTPNLPNIGNEPKVIGKAFGLAAGKTSEIIE 627

Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
             +G+  +  K                 Y +Q  +     + +A LK +  +  +  
Sbjct: 628 GNSGMFMIRAKAVTKAPEVPSYATYITQYRSQNQSYASSMAYMA-LKEKAEIKDNRA 683


>gi|218515978|ref|ZP_03512818.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli 8C-3]
          Length = 212

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 7/211 (3%)

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
           D  G D  GKEV  IP K+QLL   F  +  +     + + +  Y+W  ++E  P RDR 
Sbjct: 1   DATGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREVTPDRDRP 59

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
           + EV     +DW   +   E++ KA++L  E  K G    DI   LG ++ + + I R  
Sbjct: 60  IAEVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIATPLGIAVESKSGITR-S 117

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYL 594
            ++   G  G+   FSGPV+ V      +  + ++ KVT     P    +  +D  ++ +
Sbjct: 118 TDDPVLGRAGVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTGDVLNNRDAQLTAM 177

Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
                 D+LD ++  L++QY   V+  L ++
Sbjct: 178 ANAAGDDILDQMVNLLQTQYGAQVNQTLAEQ 208



 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 65/205 (31%), Gaps = 9/205 (4%)

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH-GSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           G   K+      L    F   + G   P +  G+ GYV  +V  + P       EV++  
Sbjct: 9   GKEVKDIPAKQQLLGEAFK-TEVGVDAPPLPIGNDGYVWFNVREVTPDRDRPIAEVREKA 67

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV----KG 427
                  +   ++ +    L+     GT++ +I+    I       +  +  D      G
Sbjct: 68  VEDWTAEQQKAELAKKADELKAEAQKGTALADIATPLGIAVESKSGITRSTDDPVLGRAG 127

Query: 428 KEVAAIPYKEQLLFRVFGKDDP---LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
            + A     + +   V         +      + P G  +  +  +     +   +++L 
Sbjct: 128 VKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTGDVLNNRDAQLTAMANAAGDDILD 187

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLE 509
            +    +T   A+   + A Q    
Sbjct: 188 QMVNLLQTQYGAQVNQTLAEQTAAR 212


>gi|20808913|ref|NP_624084.1| parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter
           tengcongensis MB4]
 gi|46396955|sp|Q8R760|PRSA_THETN RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|20517573|gb|AAM25688.1| Parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 306

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/387 (14%), Positives = 117/387 (30%), Gaps = 117/387 (30%)

Query: 19  VVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           + LF+  +  G+S     +         V  V  +K+  + +   ++Q    I     + 
Sbjct: 5   IALFLALIFVGVSLVSCSSKKEAVSGDVVAVVNGEKITNAEYQQIFEQVKEQIESAPTYT 64

Query: 75  VNSERARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
            +       G      + + +LD+LV+   L Q  +   +      V  E  +   F+ K
Sbjct: 65  KDIWNQDYQGKKFLDFVKENVLDSLVAQKLLVQEAKKKNITVTDKEVEEEYNKEKQFNSK 124

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
             K                     +   + L    ++                       
Sbjct: 125 VTK---------------------EQIREYLLIDKLL----------------------- 140

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
                               ++  L ++++++K+++                        
Sbjct: 141 -----------AEYTKDVKVTDEELKKYYDEHKESF------------------------ 165

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
                              E+     ++  ++K A++ +Q L KG+ F  LA+E      
Sbjct: 166 -------------------EVMRARHILVADEKTAEDIYQRLMKGEDFAALAKEYSIDTA 206

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              +   LG F    +      ++ FSL K G+ +  +   +GY I     I       F
Sbjct: 207 TKDNGGDLGEFPHGVMV-PEFEEAAFSL-KLGEISKPVKTQYGYHIIKSEGIT---VKPF 261

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRL 391
            EVK  I + +   K ++ +KE Y  L
Sbjct: 262 DEVKGTIESYLLNDKKNKVIKEKYDEL 288


>gi|196228020|ref|ZP_03126887.1| hypothetical protein CfE428DRAFT_0051 [Chthoniobacter flavus
           Ellin428]
 gi|196227423|gb|EDY21926.1| hypothetical protein CfE428DRAFT_0051 [Chthoniobacter flavus
           Ellin428]
          Length = 507

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 69/540 (12%), Positives = 177/540 (32%), Gaps = 67/540 (12%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK--- 61
            RK  +  +  +  V+  + F +          SGS  V  +  + +   S     +   
Sbjct: 6   FRKYQQAIMISVT-VLTIISFALLYGHTDALDRSGSGKVAVIYGKNISLPSAQRGVRKGD 64

Query: 62  --QELGMISQKIGFVVNSERARSVGLDKK------ILDNLVSGATLDQFIEDIGLEADHG 113
             ++L  +          +  +++ ++++        ++LV    L    +++G+ A   
Sbjct: 65  LCRQLAQMEAYQPKHPMMDLYQALAVNRQEARENFFFNSLV----LKHEADELGVSATED 120

Query: 114 RVWGEIARSPLFHGKDNKFSHDVF----VSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
            ++      P F   +  +    +     + L   G    +  +     +    V  +  
Sbjct: 121 EIFAATQALPAFQ-TNGAYDSQKYIMIAQNVLPSMGFTTDDLSELIGDSIRFQKVKALLG 179

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
             + PS+  +  +     +      +        A        + + +E+ K   +  E 
Sbjct: 180 TTVAPSDSEIRDSFTQLNQKTEASVVRFKLDDFLATTQVPEEDVKKLYEERKSTLKTDET 239

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-AFQ 288
           +++ ++ F +   +K +                    P        +   QK+A++ +  
Sbjct: 240 RKVRFVAFTLPTTDKPLT------------------GPARVKA---LTDLQKKAEDFSVA 278

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV-----SLADSIFSLAKKGDFTPVIH 343
              K  KF ++A +  + + +     F     P+       +  + + L K    + V+ 
Sbjct: 279 MTDKNAKFDEVAAKYNEKVQESP--EFPASKPPEALESSSEIGAAAYKLTKDQPNSDVLE 336

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE----KVKEDYKRLEEFLALGT 399
              GY +  ++NI P   ++++E K ++A+ ++  +A E    K  +   ++EE +  G 
Sbjct: 337 TPRGYYVLQLANITPPRPLAYEEAKANLADTLKHERAQEALNLKATDVRNKIEEAIKGGK 396

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           +    ++   + + D P           +     P   +++ +  G          V   
Sbjct: 397 TFAAAAQELGVKAEDFPAFS------PKEPKMDQPNAMEVM-QATGDLHQGQVSPVVPSS 449

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
           DGS +         ++   ++E      K       AE   +   Q  L+  +       
Sbjct: 450 DGSLIVYV------SKRLPIDEAKYKADKTQLADSLAEFQQTALFQQWLKLRRAAAQLES 503



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 80/240 (33%), Gaps = 10/240 (4%)

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
           + + +  K+ E+F       D+ ++ +++ +     V  + +    K   A+    ++  
Sbjct: 263 KALTDLQKKAEDF--SVAMTDKNAKFDEVAAKYNEKVQESPEFPASKPPEALESSSEIGA 320

Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
             +           +  P G Y  +Q+    P R    EE   ++    K  +  E ++ 
Sbjct: 321 AAYKLTKDQPNSDVLETPRG-YYVLQLANITPPRPLAYEEAKANLADTLKHERAQEALNL 379

Query: 502 KANQL---VLEYSKEGKNFRDIGKNLGASLLTTNQIN-RMDNENKFFGYDGISQVFSGPV 557
           KA  +   + E  K GK F    + LG         + +    ++    + +        
Sbjct: 380 KATDVRNKIEEAIKGGKTFAAAAQELGVKAEDFPAFSPKEPKMDQPNAMEVMQATGDLHQ 439

Query: 558 EMV-KCFPIENG--LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
             V    P  +G  + YV  ++   +     +K +    L +     L    +   ++  
Sbjct: 440 GQVSPVVPSSDGSLIVYVSKRLPIDEAKYKADKTQLADSLAEFQQTALFQQWLKLRRAAA 499


>gi|253681295|ref|ZP_04862093.1| foldase protein PrsA [Clostridium botulinum D str. 1873]
 gi|253562533|gb|EES91984.1| foldase protein PrsA [Clostridium botulinum D str. 1873]
          Length = 348

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 60/409 (14%), Positives = 133/409 (32%), Gaps = 84/409 (20%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW- 60
           ++ IRK     VA   L +  +  +   + +        + V  VG +K+      + + 
Sbjct: 1   MKNIRK----LVATAVLCIFTMSAVGCSMIEKTPEAIKKTVVAKVGDRKITKGELDSHFG 56

Query: 61  -KQELGMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVW 116
            K+ L    Q+ G            + +    +   + S   L Q  E + L  +   + 
Sbjct: 57  VKRYLDQFKQQYGENFEQNPQIKEQVKQIKIAVAKQIASQEALKQEAERLKLVPNDQELK 116

Query: 117 GEI-ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
            EI  ++  F  + +   +      L   G+ + ++ +     +    +           
Sbjct: 117 KEIDKKTEEFKKEQHIKDNKGLDEALKMSGLQKSDFENIIKDNIIIEKLQN--------- 167

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----RAPEYKR 231
                                     +       +  + +++ K KDNY    + P    
Sbjct: 168 -------------------------ELTKNIKVDDKEIEKYYNKNKDNYPKDPKNPTKIH 202

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +++I+        K++   D+ +A                        + E     + L 
Sbjct: 203 VAHIIL-------KVKTPEDDAKA------------------------KDEIKSIKEELN 231

Query: 292 KGKKFIQLAEEQGKSLS---DISLGSF-SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           KG  F  LA++  +  S      LG+  +     D    ++  +L K G+ +  +   FG
Sbjct: 232 KGADFAVLAKKYSQDGSKDNGGDLGTVPAINSKFDQDFMNAALTL-KDGEISDPVKTQFG 290

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           Y I  +   + +   +F EVK  +   +   K SE +   +K +++  +
Sbjct: 291 YHIIKMIKREEAPCKTFAEVKNQVKEDILQNKKSEVINNKFKEIQDKAS 339


>gi|261408078|ref|YP_003244319.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
 gi|261284541|gb|ACX66512.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
          Length = 390

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 53/406 (13%), Positives = 130/406 (32%), Gaps = 126/406 (31%)

Query: 7   KASRTWV-------AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
             S+ W+       A + +V++  PF            SG+  +  V    +   +    
Sbjct: 81  NGSKGWMIASLVLAAALIVVLIVPPFA---------KGSGNEAIAKVNDVNITKDNLY-- 129

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
                             +   SVG  K+ L+++++   + Q +++  +      V  E+
Sbjct: 130 ------------------DELVSVG-GKQTLNSMITEELIQQELKNKSITVTDADVNKEV 170

Query: 120 ARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
                       F S + F   L + G+      +     +    ++             
Sbjct: 171 DALKA------SFPSEEQFNMALQQNGMTLDNLKEQTKTQVELKKLM------------- 211

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                                         ++  + + +++ K+++  PE  R       
Sbjct: 212 ------------------------ADKIKVTDEEVKEVYDQNKESFATPEQVR------- 240

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                                               ++   ++EA+   + LK+G  F  
Sbjct: 241 ---------------------------------ASHILVETKEEAEAIVKQLKEGADFAT 267

Query: 299 LAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +A+E+ +     +   L  F +  + D +  ++ F L KK + +  +  SFGY I  V++
Sbjct: 268 IAKEKNQDATKDTGGDLNFFGRGEM-DPAFEEAAFKL-KKDEISEPVKSSFGYHIIKVTD 325

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
            K +   + ++ K++I +Q+   K   +     + L++   +  ++
Sbjct: 326 RKEATNPTLEDKKEEIRSQLENQKVYAESTAYIQELKDKATITNTL 371



 Score = 40.7 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 96/298 (32%), Gaps = 32/298 (10%)

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-----KKDIANQMRITKASEK 383
             +L       P   GS    IA V+++  +    + E+     K+ + + +      ++
Sbjct: 94  AAALIVVLIVPPFAKGSGNEAIAKVNDVNITKDNLYDELVSVGGKQTLNSMITEELIQQE 153

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +K     + +         ++++    +    P  +     ++   +     KEQ   +V
Sbjct: 154 LKNKSITVTDA--------DVNKEVDALKASFPSEEQFNMALQQNGMTLDNLKEQTKTQV 205

Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
             K   L  D      +      ++KE               V+     V+T EE     
Sbjct: 206 ELK--KLMADKIKVTDE------EVKEVYDQNKESFAT-PEQVRASHILVETKEEA---- 252

Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
            + +++  KEG +F  I K            +                 F    + +   
Sbjct: 253 -EAIVKQLKEGADFATIAKEKNQDATKDTGGDLNFFGRGEMDPAFEEAAFKLKKDEI-SE 310

Query: 564 PIENGLSYVVFKVTN----SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           P+++   Y + KVT+    +      +K++  S L          + I  LK + ++T
Sbjct: 311 PVKSSFGYHIIKVTDRKEATNPTLEDKKEEIRSQLENQKVYAESTAYIQELKDKATIT 368


>gi|225850233|ref|YP_002730467.1| hypothetical protein PERMA_0679 [Persephonella marina EX-H1]
 gi|225646664|gb|ACO04850.1| hypothetical protein PERMA_0679 [Persephonella marina EX-H1]
          Length = 461

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/520 (14%), Positives = 169/520 (32%), Gaps = 79/520 (15%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD----ALFSVSGSSTVVSVGRQKVPFSSF 56
           M   I   + +   K   V+    F   G +             +    V  +++    F
Sbjct: 1   MFAKI---AESKWMK--FVLFITTFAFVGTAFVAIVIYKFAGNITGAAVVNGREISLQEF 55

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                     +  +    V++   +    D + L+ ++    L Q  E  G+ A    V 
Sbjct: 56  YYQVNVIQNRLENQ---GVDTAPLKKEIYD-QALEAVIDRELLYQEAEKEGIAATKEEVK 111

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I     F  +D +FS D +++ L+   I+ + + +   K LS   +          S+
Sbjct: 112 RAILDVEAFK-EDGRFSKDRYIALLSGMNISPQLFEEIVRKDLSAQHLFTFLDASFYLSD 170

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
             ++          S D++ +  + +      S     +++EK+K  Y   E K +    
Sbjct: 171 EEINSYVYKQLSKLSGDFLYIKPQPL----KISEEEAKRYYEKHKSEYTGKEGKEVIIYR 226

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
            D+ +  ++                                 ++K A + F  LKKG+  
Sbjct: 227 IDIDKNNQE--------------------------------KSEKLAKDLFLRLKKGET- 253

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-----VIHGSFGYVIA 351
               E + + +  I       +     ++ + +    K  + +P      +     Y ++
Sbjct: 254 ----EIKNEDIKIIFKDVIYDDTDSISNIPEELKKKLK--EISPDKNIIFVKTDDAYYLS 307

Query: 352 HVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
               I+       +++VK +I ++++       VKE Y+++ +    G  +  + ++   
Sbjct: 308 RF--IRAVKEPLPYEKVKDEIYSKLKEDYEKRAVKELYEKISKESDKG--IQSLMKKYDG 363

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
               +             E          L   + K     ++  + L DG  +  +I +
Sbjct: 364 KLEKIK-----------DETVRDLIVRYGLTPEYMKLFIKDREGIIPLKDG-ILVYKIDK 411

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
             P  D +  E+   V+   K  K    V    ++L  + 
Sbjct: 412 VTPPTDEESGELKKLVEPLLKNEKYNTLVQMYIDKLRKDA 451



 Score = 38.8 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 46/153 (30%), Gaps = 11/153 (7%)

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
               E+V  ++    K       V     ++  E  K     + + K     L       
Sbjct: 316 PLPYEKVKDEIYSKLKEDYEKRAVKELYEKISKESDKG---IQSLMKKYDGKLEKIKDET 372

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS--- 592
             D   ++       ++F    +     P+++G   +V+K+        +E  +      
Sbjct: 373 VRDLIVRYGLTPEYMKLFI--KDREGIIPLKDG--ILVYKIDKVTPPTDEESGELKKLVE 428

Query: 593 -YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
             L       L+   I  L+    +  ++ + +
Sbjct: 429 PLLKNEKYNTLVQMYIDKLRKDAEIIRNERIFR 461


>gi|116748015|ref|YP_844702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697079|gb|ABK16267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 353

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 121/354 (34%), Gaps = 76/354 (21%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V    +  + + +  K+         G     + A+   + KK+LD LV    L Q 
Sbjct: 61  VAVVNGTVITRAEYESETKR-FERQMAMSGQA--PDGAQVAEMKKKVLDGLVGREVLKQQ 117

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSR 161
              +G++ D   V  EIA          +F + D F   L    + E+     +T+ L  
Sbjct: 118 AAKLGVKVDPAEVDKEIATLKQ------RFPNEDEFKKALKNLNLTEESLKAQFTQDLGI 171

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
             ++                                    V +    +     ++++   
Sbjct: 172 RKMID---------------------------------EQVASKITITPEETKKFYDGNP 198

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           + ++ PE  R S++L  V  K    +                                ++
Sbjct: 199 ELFKTPEMVRASHVLIKVDPKAGDAD----------------------------KAKAKE 230

Query: 282 EADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
               A + ++ G+ F ++A+E      +     L  F +  +       + F+L K G  
Sbjct: 231 RITAAQKKVQAGEDFAKVAKEVSECPSAAKGGDLDFFQRGQMVGP-FEQAAFAL-KVGSV 288

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + ++   FGY +  V++ K +  + + E+K  IA  ++  + ++++ +  + L+
Sbjct: 289 SDIVETQFGYHVIKVTDKKEAGVMKYDEIKDRIAQHLKQDRVNQQLAKYIEELK 342



 Score = 44.2 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 8/153 (5%)

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ---LVLEYSKEGKNFRDIGKNLGASLL 529
           P   +  E V           K  +   +KA +      +  + G++F  + K +     
Sbjct: 198 PELFKTPEMVRASHVLIKVDPKAGDADKAKAKERITAAQKKVQAGEDFAKVAKEVSECPS 257

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
                +    +            F+  V  V    +E    Y V KVT+ K   V + D+
Sbjct: 258 AAKGGDLDFFQRGQMVGPFEQAAFALKVGSVSDI-VETQFGYHVIKVTDKKEAGVMKYDE 316

Query: 590 FISYLTQMMNKDLLDS----VIAYLKSQYSVTV 618
               + Q + +D ++      I  LK+Q  + +
Sbjct: 317 IKDRIAQHLKQDRVNQQLAKYIEELKAQAKIEI 349



 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 43/130 (33%), Gaps = 9/130 (6%)

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
             K KE     ++ +  G    ++++       + P     G     +    +   EQ  
Sbjct: 225 KAKAKERITAAQKKVQAGEDFAKVAKEVS----ECPSAAKGGDLDFFQRGQMVGPFEQAA 280

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
           F +      +     +      Y  +++ +   A   K +E+   + +  K  +  ++++
Sbjct: 281 FAL-----KVGSVSDIVETQFGYHVIKVTDKKEAGVMKYDEIKDRIAQHLKQDRVNQQLA 335

Query: 501 SKANQLVLEY 510
               +L  + 
Sbjct: 336 KYIEELKAQA 345


>gi|323701603|ref|ZP_08113275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533376|gb|EGB23243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 341

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/373 (16%), Positives = 121/373 (32%), Gaps = 71/373 (19%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLV 94
            + +  V +V  +++  +         +    Q+ G  + S+  + +   L+K +LD+L+
Sbjct: 24  SNNADVVATVNGKEITRAELDKQVNMTVEQYKQQ-GIDLTSKENKDMKAQLEKSVLDDLI 82

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
           +   L Q  E   L      V   I           K   + F   LA   + E++  + 
Sbjct: 83  TKTLLMQEAERQKLTPSKEEVDKSIKDIKA---TFGK--EEDFKKALAEVKMTEQDVRED 137

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
            T  L+   +V      ++                                  P+ A + 
Sbjct: 138 ITFRLTYQKLVDKVTADVKA---------------------------------PTEAEIA 164

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           +++ ++KD +  PE   + +ILF    K        +    +  K      +        
Sbjct: 165 KYYNEHKDQFGTPERLEVKHILFAFDGKVPNAPKRTEAEALQAAKLALAEIT-------- 216

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIF 330
                           +KG+ F  +A E+   L     G            D +   +  
Sbjct: 217 ----------------QKGRDFAAVAREKSDDLGTRENGGSYTVDKGAGTTDPAFEKAAA 260

Query: 331 SLAKKGDFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           +L K G+ T   +  ++GY +  +  I+P+   S  EVK  IA Q+       K  +   
Sbjct: 261 AL-KPGEITKQPVKSAYGYHLIKLEKIEPATQKSLAEVKDQIAAQLESEAKQAKFSQFVD 319

Query: 390 RLEEFLALGTSMD 402
            L++   +   + 
Sbjct: 320 ELKKKAEIDNRLA 332


>gi|258513569|ref|YP_003189791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777274|gb|ACV61168.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 327

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 121/375 (32%), Gaps = 78/375 (20%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLVSG 96
            ++ V +V  +++                 ++ G  +  + A+ +   +   +LD ++S 
Sbjct: 21  NTNVVATVNGEEITQQQLDKRVSIVKDYYEKQYGQKIEGQDAQKLIDNMKPGLLDEMISD 80

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHY 155
               Q    +G +    ++  +I       G   +F + + F + LA++ + EK+     
Sbjct: 81  TLKRQEARKVGKDMTDQQIQEKID------GVKKQFPNEEAFKNFLAQQDLTEKD----M 130

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             ML+  DVV                                    +  +  P+   + +
Sbjct: 131 AYMLNLQDVV------------------------------------LKDVKAPTEEEVQE 154

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++++ K+ ++  E   + +IL      +                            V+  
Sbjct: 155 YYDQNKEQFKTAEQYEVRHILISTDPDDAG-------------------------NVKHT 189

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSL 332
               +K A +    +K GK F  LA E+ + L     G   +F K          +  +L
Sbjct: 190 EAEAEKLAVQVLADIKNGKDFAALAREKSEDLGSKDNGGLYTFKKGDTV-PEFEKAALAL 248

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                    +   FGY I  +  + P+   SF EVK  I  Q+       K     + L+
Sbjct: 249 KPGEYTREPVKTQFGYHIIKLEKLIPARDQSFAEVKDGIKQQLDQEAKKNKFNAYLEDLK 308

Query: 393 EFLALGTSMDEISRR 407
           +   +   + E    
Sbjct: 309 KKAKITNKLAETGDN 323



 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 4/130 (3%)

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
            VK  E  + K    VL   K GK+F  + +     L + +       +      +    
Sbjct: 185 NVKHTEAEAEKLAVQVLADIKNGKDFAALAREKSEDLGSKDNGGLYTFKKGDTVPEFEKA 244

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVI 607
             +         P++    Y + K+            + KD     L Q   K+  ++ +
Sbjct: 245 ALALKPGEYTREPVKTQFGYHIIKLEKLIPARDQSFAEVKDGIKQQLDQEAKKNKFNAYL 304

Query: 608 AYLKSQYSVT 617
             LK +  +T
Sbjct: 305 EDLKKKAKIT 314


>gi|255038469|ref|YP_003089090.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
           fermentans DSM 18053]
 gi|254951225|gb|ACT95925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
           fermentans DSM 18053]
          Length = 705

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/716 (11%), Positives = 198/716 (27%), Gaps = 121/716 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSD------ALFSVSGSSTVVSVGRQKVPFSS 55
           +  IR+ S      + + V+ +  +++ +        +L   + +  V  +  +++    
Sbjct: 4   INKIREKSG-----VAVTVIAISLILFMVGGDLLGPNSLLGGNDNQIVGEIAGKEINIKD 58

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F +           + G  +N     S  L  +  +  V      +  + +GLE     +
Sbjct: 59  FQSRVDGFRQNYEAQSGRSLNEGELAS--LRDQAWNQFVVDIAYKKQYDKLGLEVTDEEL 116

Query: 116 WGEIARS-------PLFHGKD-NKFSHDVFVSRLAR-------EGINEKEYIDHYTKMLS 160
           +  +  +         F      +F  +  V+ L         +  + + +     +  +
Sbjct: 117 YDMVQGNHISPSILQAFSDPTTGRFDKNAVVNYLKNLKTLPLEQQKSWENFEKSLREERT 176

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN---------------------- 198
           R     M            ++         ++ Y+ +                       
Sbjct: 177 RAKYENMLRLSTYTPKAQAEKEYVAQNTKANLRYLYVPYFSVVDTTIKVTDAQLEEYLSA 236

Query: 199 ------------NRHVPAIADPSNAVLTQWFEKYKD------------NYRA-----PEY 229
                         +V     P+       + + K+             + A     P  
Sbjct: 237 HKKEYKGTDTRSIEYVTFPVQPAKDDSAALYNEIKELARGLATAQSDSAFAAMNTDIPTP 296

Query: 230 KRISYILFDVHEKEKKIEI---------SNDELQAEYEKNKEKYFSPEIRTVEQLVF--- 277
              SY       KE                      Y+    +  S        ++    
Sbjct: 297 INQSYATMSDQLKEAVKTFVPGGVYGPYREGNTYYIYKYGGTRSDSVSSAKASHILIRAE 356

Query: 278 --------PNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSL 325
                     + +A+     +K G  F  LA     + G +     LG F          
Sbjct: 357 NQSDSAKTAARVKAEGILAQIKAGANFEALAATSSADPGSAQRGGDLGYFQNNGAMVKPF 416

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            +++FS +  G    ++   FG+ I  V+  K +       + K IA         ++  
Sbjct: 417 EEAVFSASAPGLIPRLVESQFGFHIIKVTAPKSNTLYRIATIGKTIAP---SQATRDEAY 473

Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
                    +      +E  ++ K     L L +          + AI    +++   F 
Sbjct: 474 RRADEFANTVKSREQFEEAVKKNKA----LVLANANRIPESATNINAIQNAREIVRWAFK 529

Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
           +D   S    V   +  Y+   +     A+D K+++   ++    +          KA Q
Sbjct: 530 EDTKPSTVSPVFETEEQYVVAVLTGKSDAKDVKVDDFRDELTTKVRNQI-------KAEQ 582

Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQ----INRMDNENKFFGYDGISQVFSGPVEMVK 561
           +  +      +  DI K  GA  L  +     +      +  F    + + F        
Sbjct: 583 ISAKLKGATGSLEDIAKKYGAGALVESASDISLATGFLTSAGFDPIALGKAFGLKAGQKS 642

Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                    +++  V  +    + +  ++ + +TQ +   +   V   ++    + 
Sbjct: 643 GVFTGENGVFIMELVNKTDAPKIADFTQYKTQVTQSLESRMSYLVNEAIRENAKIE 698


>gi|15606037|ref|NP_213414.1| hypothetical protein aq_592 [Aquifex aeolicus VF5]
 gi|2983223|gb|AAC06821.1| hypothetical protein aq_592 [Aquifex aeolicus VF5]
          Length = 437

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 156/443 (35%), Gaps = 73/443 (16%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW--GLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
           M  +I+K  R  +A I + +  + FL W   +SD    ++G+  V +VG + +       
Sbjct: 1   MFGLIQKHKR--IAVIIVTLASLSFLFWMFSVSDVKQMLTGNPCVATVGDECITLRE--- 55

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            ++ EL   S  +      + A      +  L++L++   L    +++G       V   
Sbjct: 56  -YRFELLKYSNFLQDERTEKLA-----RRVALNSLITKEVLYLKAKELGWYVSDEEVVEV 109

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I     F  +  KFS + +   L R G+   EY +   K L    V+     G+      
Sbjct: 110 IKNDENFK-EKGKFSVEKYRETLNRFGLTPAEYEEIVRKSLMAQRVLNFLREGVYVLPDE 168

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPS----------------------------- 209
           LD  KRFY         ++    V    +PS                             
Sbjct: 169 LDIQKRFYSLRVEGKLYLIKPSDVKVDYEPSEEEIKEYYEKNKEKFKEEEKEVVYVWSLK 228

Query: 210 -NAVLTQWFEKYKD--------NY--RAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
               + +++E  K          +    P   + +    +   + K + +  +     Y+
Sbjct: 229 DKEKVKEYYENLKKGSIPSGYTEFNENLPPKVKEAVKELNQENRIKVVRVGENYYLLYYK 288

Query: 259 KNKEKYFSP----EIRTVEQLVFPNQKE-----ADEAFQSLKKGKKFIQLAEEQGKSLSD 309
             +   + P    +    ++LV   Q+E     A E F++LK+GK+       +  + S 
Sbjct: 289 GKENAGYKPLEEVKEEIKKELVAKKQREKLKEFAQEVFKNLKEGKE----VGVKPLAFSS 344

Query: 310 ISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
            SL    +  + +   L + +F   K            GY I  V N K       ++VK
Sbjct: 345 ASLEEIQRILMVEQKDLLNLVFGKEK---VYGPYPSLAGYGILVVKNRKFEELKP-EQVK 400

Query: 369 KDIANQMRITKASEKVKEDYKRL 391
            +I  +++  K ++      ++L
Sbjct: 401 -EIERELKDNKFNDLAGLFVEKL 422



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
           A  + LEEV  ++KK+    K  E++   A + V +  KEGK      K L  S  +  +
Sbjct: 293 AGYKPLEEVKEEIKKELVAKKQREKLKEFAQE-VFKNLKEGK--EVGVKPLAFSSASLEE 349

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
           I R+    +    D ++ VF G  ++   +P   G   +V K    +    ++  +    
Sbjct: 350 IQRILMVEQ---KDLLNLVF-GKEKVYGPYPSLAGYGILVVKNRKFEELKPEQVKEIERE 405

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           L      DL    +  L  +Y V V++ L 
Sbjct: 406 LKDNKFNDLAGLFVEKLIKEYGVKVNEQLA 435


>gi|304405097|ref|ZP_07386757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345976|gb|EFM11810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
          Length = 365

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/411 (13%), Positives = 133/411 (32%), Gaps = 102/411 (24%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
            WV    L+V+ +       + +         V SV    +      ++           
Sbjct: 40  GWVVSAALLVILILVA----TLSYAGDDKGENVASVNGVAITEKQLYDA----------- 84

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
           +  +    +     + +  LD+L++   ++Q ++  GL      +  E+           
Sbjct: 85  LLLIKGGGQNGQQKMSEVTLDDLINVELMNQELQKQGLVVAEADIDKEL---DALKKAYG 141

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
               +     LA+ G+   +      K      ++                         
Sbjct: 142 -LDDEKLKQTLAQSGMTVADLRPDLEKQAKLRKLLS------------------------ 176

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
                        + A  ++  +  ++++ K+++  PE  R                   
Sbjct: 177 -------------SKATVTDKDIQDYYDQNKESFSTPEQVR------------------- 204

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-- 308
                                   ++   ++EAD   + LK G  F  +A+E+       
Sbjct: 205 ---------------------ASHILVKTKEEADAILKQLKDGADFATIAKEKSLDTGTK 243

Query: 309 --DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
                L  F K  + D +   + F L K G+ +  +  ++G+ I  V++ K + + +F+E
Sbjct: 244 DAGGDLNYFGKGQM-DPAFEKAAFEL-KVGETSQPVQSAYGFHIIKVTDHKQAASPTFEE 301

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
            K+DI N + ++K +E  +   + L+    +  S+ +  ++E   + + P 
Sbjct: 302 KKEDIKNILMMSKINELAQPFIEELKSKAKIENSLVKEDKQEGAAATEEPA 352



 Score = 37.3 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 51/173 (29%), Gaps = 14/173 (8%)

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
            Q+R +    K KE+   + + L  G     I++     S+D    D  G      +   
Sbjct: 201 EQVRASHILVKTKEEADAILKQLKDGADFATIAKE---KSLDTGTKDAGGDLNYFGKGQM 257

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
            P  E+  F +            V    G +  +++ +   A     EE   D+K     
Sbjct: 258 DPAFEKAAFEL----KVGETSQPVQSAYG-FHIIKVTDHKQAASPTFEEKKEDIKNILMM 312

Query: 493 VKTAEEVSSKANQLVLE------YSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            K  E       +L  +        KE K          A+     +     N
Sbjct: 313 SKINELAQPFIEELKSKAKIENSLVKEDKQEGAAATEEPAASTPKEEATTTTN 365


>gi|329923149|ref|ZP_08278648.1| putative foldase protein PrsA [Paenibacillus sp. HGF5]
 gi|328941591|gb|EGG37877.1| putative foldase protein PrsA [Paenibacillus sp. HGF5]
          Length = 398

 Score =  143 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 53/406 (13%), Positives = 129/406 (31%), Gaps = 126/406 (31%)

Query: 7   KASRTWV-------AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
             S+ W+       A + +V++  PF            SG+  +  V    +   +    
Sbjct: 81  NGSKGWMIASLVLAAALIVVLIVPPFA---------KGSGNEAIAKVNDVNITKDNLY-- 129

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
                             +   SVG  K+ L+++++   + Q +++  +      V  E+
Sbjct: 130 ------------------DELVSVG-GKQTLNSMITEELIQQELKNKSITVTDADVNKEV 170

Query: 120 ARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
                       F S + F   L + G+      +     +    ++             
Sbjct: 171 DALKA------SFPSEEQFNMALQQNGMTLDNLKEQTKTQVELKKLM------------- 211

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                                         +   + + +++ K+++  PE  R       
Sbjct: 212 ------------------------ADKIKVTGEEVKEVYDQNKESFATPEQVR------- 240

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                                               ++   ++EA+   + LK+G  F  
Sbjct: 241 ---------------------------------ASHILVETKEEAEAIVKQLKEGADFAT 267

Query: 299 LAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +A+E+ +     +   L  F +  + D +  ++ F L KK + +  +  SFGY I  V++
Sbjct: 268 IAKEKNQDATKDTGGDLNFFGRGEM-DPAFEEAAFKL-KKDEISEPVKSSFGYHIIKVTD 325

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
            K +   + ++ K++I +Q+   K   +     + L++   +  ++
Sbjct: 326 RKEATNPTLEDKKEEIRSQLENQKVYAESTAYIQELKDKATITNTL 371



 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 96/298 (32%), Gaps = 32/298 (10%)

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-----KKDIANQMRITKASEK 383
             +L       P   GS    IA V+++  +    + E+     K+ + + +      ++
Sbjct: 94  AAALIVVLIVPPFAKGSGNEAIAKVNDVNITKDNLYDELVSVGGKQTLNSMITEELIQQE 153

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +K     + +         ++++    +    P  +     ++   +     KEQ   +V
Sbjct: 154 LKNKSITVTDA--------DVNKEVDALKASFPSEEQFNMALQQNGMTLDNLKEQTKTQV 205

Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
             K   L  D      +      ++KE               V+     V+T EE     
Sbjct: 206 ELK--KLMADKIKVTGE------EVKEVYDQNKESFAT-PEQVRASHILVETKEEA---- 252

Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
            + +++  KEG +F  I K            +                 F    + +   
Sbjct: 253 -EAIVKQLKEGADFATIAKEKNQDATKDTGGDLNFFGRGEMDPAFEEAAFKLKKDEI-SE 310

Query: 564 PIENGLSYVVFKVTN----SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           P+++   Y + KVT+    +      +K++  S L          + I  LK + ++T
Sbjct: 311 PVKSSFGYHIIKVTDRKEATNPTLEDKKEEIRSQLENQKVYAESTAYIQELKDKATIT 368


>gi|188996999|ref|YP_001931250.1| hypothetical protein SYO3AOP1_1079 [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932066|gb|ACD66696.1| hypothetical protein SYO3AOP1_1079 [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 460

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/496 (12%), Positives = 175/496 (35%), Gaps = 66/496 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFIN 58
           M + I   S++    I L +    F+   +   +        + V  V  +++PF  F  
Sbjct: 1   MFDKI---SQSKWKNIVLFITVFAFVATSIVAIIVYKLSGEINGVAEVNGKEIPFYEFNY 57

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           +++     +  +    ++    +   + K+++++L+    L Q  E  G+ A   +V  E
Sbjct: 58  AYEMTARNMQMQ---NLDISNLKD-QIKKEVVNDLIEKELLYQEAEKEGITATSEQVKNE 113

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I +   F   + KF    ++  +   G+    + +   K LS  ++  + +  +  S+  
Sbjct: 114 ILKISAFQ-VNGKFDKQTYLQIINSFGLTPDAFENILRKELSVNNLKTILLSTIYVSDEE 172

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           ++   +      S +  ++         + +  ++ +++E++K +Y A   K I+    D
Sbjct: 173 IETFTKKQLTRVSGEATIIKPN----TPEITEEMIKKFYEEHKKDYLAQTGKNITVYKID 228

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           + +                                      Q+ A + F   K G   +Q
Sbjct: 229 IQKLGDD--------------------------------KAQQLAKQLFTQAKSGN--LQ 254

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
               + + + +  + S  +       + + + SL K    +        Y I+  +  + 
Sbjct: 255 SVPAEVEKVFEGDVFSNQEIQNLPKEIQEDVNSLNKDKKVS-FTKTQNEYYISVFNG-ES 312

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             ++ +++VK +I  ++    + + +++  K         T + ++ ++ K     +   
Sbjct: 313 LKSIPYEQVKNEIKQKLERELSQKALQDMQKT--------TDITQLLKQNKTEKQTI--- 361

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
                +   + V     K + L ++   +  + +       +   +  ++ E       +
Sbjct: 362 ---SDNTIQELVVKFGIKREDLNKL--ANLKVGEISKPISTENGILIFKLTEIKEPDKSQ 416

Query: 479 LEEVLTDVKKDWKTVK 494
           ++E    +    K+ K
Sbjct: 417 VDETKRTILPFIKSQK 432


>gi|220932946|ref|YP_002509854.1| peptidil-prolyl cis-trans isomerase [Halothermothrix orenii H 168]
 gi|219994256|gb|ACL70859.1| peptidil-prolyl cis-trans isomerase [Halothermothrix orenii H 168]
          Length = 332

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/391 (15%), Positives = 123/391 (31%), Gaps = 84/391 (21%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ--KIGF 73
           +FL +  V  + + +          +    V  +++  S     + +   +I Q  +   
Sbjct: 7   VFLFLALVLVISFSVLAEDKVEKTDNIAAVVDGKEITISEVD-EYARTRDVIMQLYQANG 65

Query: 74  VVNSERARSV-------GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
                   +           K  LD L++   L +  ++ G+      +           
Sbjct: 66  EFTQLILSTEAGNELINEYRKLKLDELITRELLIKEAKNQGINVSKEEM----------- 114

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
              +K  ++       +  INE++      + L++  +              LDQ K  +
Sbjct: 115 ---DKIFNEQIEMVKQKNNINEEQ----LLQALNQQGIES------------LDQYKNLF 155

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
           FE  + D +++N                                          +  + +
Sbjct: 156 FEQ-NGDLLLINK--------------------------------------LREKVMEDV 176

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG-- 304
            +    ++  Y+ NKE +          ++   +KEA E    L+ G  F ++A+E    
Sbjct: 177 SVEESAVREYYDNNKENFKHGTQIKARHILVETEKEAREILNELENGADFGEMAKEYSTG 236

Query: 305 -KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
             S +   LG F K  +      ++ F+L K G  +  +   +GY I  V +        
Sbjct: 237 PSSKNGGDLGYFGKGRMV-PEFEEAAFAL-KVGQISDPVKTQYGYHIIKVEDKVEEGITP 294

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           F EVK  I N +   K         K L + 
Sbjct: 295 FDEVKDKIKNNLLQQKQQTAWNNFLKELRDK 325


>gi|225848384|ref|YP_002728547.1| hypothetical protein SULAZ_0557 [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644127|gb|ACN99177.1| hypothetical protein SULAZ_0557 [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 456

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/439 (15%), Positives = 157/439 (35%), Gaps = 76/439 (17%)

Query: 18  LVVLFVPFLIWG---LSDALFSVSGSST-VVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           +V+    F       ++  ++ +SG       V  +++P   F  +++     +  +   
Sbjct: 13  IVLYITAFAFVATSIVAVIIYKLSGEIYGAAEVNGREIPMYEFNYTYEMIGRNLQNQ--- 69

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            ++    +   + K+ ++ L+    L Q  E  G+ A   +V  E+   P F   + KF 
Sbjct: 70  DIDITPFKK-EIAKQAIETLIENELLYQEAEKEGIVATKEQVKEELLNIPAFQ-VNGKFD 127

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            + ++  +   G+  + +     K ++  ++  + +  +  S+  ++   +      S +
Sbjct: 128 KNTYIQIINSLGLTPEGFESILQKQITVNNLRSILLSTLYVSDEEVETFTKKQLTRISGE 187

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK----------- 242
             ++  +        ++ ++  ++EK+K +Y   E K++     D+++            
Sbjct: 188 VTLIKPKE----PTITDQMIKDYYEKHKSDYTVKEGKKVEIYKIDINKLGQEKAEIIAKD 243

Query: 243 ----EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG--- 293
                K   I+N   E++  ++    +   PE   V Q V    K+   +F     G   
Sbjct: 244 LFTKAKTGNITNIPQEVEKIFDGEVYEDKKPE--NVPQDVLSLSKDKKVSFSKTNDGYYI 301

Query: 294 ----------KKFIQLAEEQGKSLSD-------------------ISLGSFSKEYIPDVS 324
                     K F ++  E  + L                     +S     K  I D++
Sbjct: 302 GIYKGDVSQSKPFEEIKTEITEKLKRQEYQKVVDQLHKTTDITALLSNNPVEKNQISDMT 361

Query: 325 LAD-------SIFSLA-----KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           + +          SL+     K G+ +  I+   G +I  +S +        +E+KK I 
Sbjct: 362 IQEFVVKYGVKADSLSSITRLKVGETSKPINTEEGVLIFKLSQLTEPDKDKMEEMKKTIV 421

Query: 373 NQMRITKASEKVKEDYKRL 391
             ++  K ++  K     L
Sbjct: 422 PMIKAQKFNDIYKMYVDNL 440


>gi|167629347|ref|YP_001679846.1| ppic-type ppiase domain protein, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592087|gb|ABZ83835.1| ppic-type ppiase domain protein, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 338

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 111/360 (30%), Gaps = 87/360 (24%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
            SG + V SV  + +  S       +    +S+  G   +S+      L+++ L++++  
Sbjct: 24  SSGGNVVASVNGETISRSDLDKRINRYKEELSRSGGA--DSKEL-MANLERQELEHMIDE 80

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               Q  +   +E   G+V  E+A+           S   F   L R  + E E      
Sbjct: 81  MLFTQEAKKRNIEVSDGQVAAELAKEKQ-QFP----SDAEFQEALKRYRLTEDELSGIIR 135

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L    +                                            S+A + ++
Sbjct: 136 TRLIFNGLYDAVTS----------------------------------DIQISDADVEKY 161

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +    D ++     + S                                         ++
Sbjct: 162 YRDNPDKFKQNRQVKAS----------------------------------------HIL 181

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSL 332
              ++EA      L++G  F QLA ++        +   LG F  E +     +D+ FS+
Sbjct: 182 LKTEEEAKAIIAELERGADFAQLAVQKSTDSTAAQNKGDLGYFQAEDMVK-EFSDAAFSM 240

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            K       +  +FGY +  V +IK +    F EVK  I   +   +  E+ +  +  ++
Sbjct: 241 KKGETSRTPVKSNFGYHVIRVEDIKEARQQRFDEVKDQIRVDLGADRKQERFESWFADVK 300



 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 82/254 (32%), Gaps = 24/254 (9%)

Query: 268 EIRTVEQLVFP--NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
           E + +E ++      +EA +    +  G+   +LA+E+ +  SD       K Y      
Sbjct: 70  ERQELEHMIDEMLFTQEAKKRNIEVSDGQVAAELAKEKQQFPSDAEFQEALKRY------ 123

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN---QMRITKASE 382
                    + + + +I     +   +   +     +S  +V+K   +   + +  +  +
Sbjct: 124 ------RLTEDELSGIIRTRLIFNGLY-DAVTSDIQISDADVEKYYRDNPDKFKQNRQVK 176

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
                 K  EE  A+   ++  +   ++          A          A    ++    
Sbjct: 177 ASHILLKTEEEAKAIIAELERGADFAQLAVQKSTDSTAAQNKGDLGYFQAEDMVKEFSDA 236

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE---- 498
            F      +    V   +  Y  +++++   AR ++ +EV   ++ D    +  E     
Sbjct: 237 AFSMKKGETSRTPVK-SNFGYHVIRVEDIKEARQQRFDEVKDQIRVDLGADRKQERFESW 295

Query: 499 -VSSKANQLVLEYS 511
               KA   +    
Sbjct: 296 FADVKAQAKIERKL 309


>gi|251794480|ref|YP_003009211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
 gi|247542106|gb|ACS99124.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
          Length = 392

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/401 (14%), Positives = 121/401 (30%), Gaps = 113/401 (28%)

Query: 6   RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
           R   + W+A   ++ + +  ++          +G   V +V   K+              
Sbjct: 70  RSGGKAWIAVSAILAIVLIIVLI----KPPFGAGDKAVATVNGAKITKDKL-------YD 118

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
            + ++ G              K  LDN+++   +DQ   D  +      V  EI      
Sbjct: 119 SLVEQGG--------------KSTLDNMITTELIDQAAADAKVTVTEADVDKEIEN---L 161

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
                      F   LA+ G+      +     +    ++                    
Sbjct: 162 KKSFGSEDE--FNQTLAQYGMTVDSLREDAEVQVKIRKILEP------------------ 201

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
                                  ++  +  +++  K +   PE                 
Sbjct: 202 -------------------QVKVTDDDIKAYYDANKASMSTPEQI--------------- 227

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
                                        ++   ++EA++  + LK G  F  LA+E+  
Sbjct: 228 -------------------------RASHILVATKEEAEDILKQLKAGADFATLAKEKST 262

Query: 306 SLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     L  F K  + + +  D+ F+L KKG+ + V+  S+GY I   ++ K + T
Sbjct: 263 DTGTKDNGGDLNFFGKGSM-EPAFEDAAFAL-KKGELSGVVQTSYGYHIIKKTDEKAAVT 320

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            + +E K+DI  Q+   K SE        L+    +  ++D
Sbjct: 321 PTLEEKKEDIKYQLVTQKVSELSSTWMADLKAKAKITNTLD 361


>gi|237756262|ref|ZP_04584821.1| hypothetical protein SULYE_0873 [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691581|gb|EEP60630.1| hypothetical protein SULYE_0873 [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 460

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/459 (15%), Positives = 159/459 (34%), Gaps = 77/459 (16%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFIN 58
           M + I   S++    I L +    F+   +   +        + V  V  +++PF  F  
Sbjct: 1   MFDKI---SQSKWKNIVLFITVFAFVATSIVAIIVYKLSGEINGVAEVNGKEIPFYEFNY 57

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           +++     +  +    ++    +   + K+++++L+    L Q  E  G+ A   +V  E
Sbjct: 58  AYEMTARNMQMQ---NLDISNLKD-QIKKEVVNDLIEKELLYQEAEKEGITATSEQVKNE 113

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I +   F   + KF   +++  +   G+    + +   K LS  ++  + +  +  S+  
Sbjct: 114 ILKISAFQ-VNGKFDKQIYLQIINSFGLTPDAFENILKKELSVNNLKTILLSTIYVSDEE 172

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           ++   +      S +  V+         + +  ++ +++E++K +Y A   K I+    D
Sbjct: 173 IETFTKKQLTRVSGEATVIKPN----TPEITEEMIKKFYEEHKKDYSAQTGKNITVYKID 228

Query: 239 VHEKEKKIE-------------------------------ISNDELQAE----------Y 257
           + +    I                                 SN E+Q             
Sbjct: 229 IQKLGDDIAQQLAKQLFTQAKSGNLQSVPAEVEKVFEGDVFSNQEIQNLPKEVQEDANSL 288

Query: 258 EKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLK------------KGKKFI 297
            K+K+  F+         +F        P ++  +E  Q L+            K     
Sbjct: 289 NKDKKVSFTKAQNEYYISLFNGESLKSIPYEQVKNEIKQKLERELSQKALQDMQKTTDIT 348

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHGSFGYVIAHVSN 355
           QL ++       IS  +  +  +      + +  LA  K G+ +  I    G +I  ++ 
Sbjct: 349 QLLKQNKTEKQTISDNTIQELVVKFGIKREDLNKLANLKVGEISKPISTENGILIFKLTE 408

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           IK        E KK I   ++  K ++  +     L + 
Sbjct: 409 IKEPDKSQVDETKKTILPFIKSQKFNDVYQMYVDSLRKK 447



 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 58/154 (37%), Gaps = 17/154 (11%)

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSS-KANQLVLEYSKEGKN-FRDIGKNLGASLLTTNQIN 535
             E+V  ++K+  +   + + +   +    + +  K+ K   + I  N    L+    I 
Sbjct: 317 PYEQVKNEIKQKLERELSQKALQDMQKTTDITQLLKQNKTEKQTISDNTIQELVVKFGIK 376

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFI 591
           R D          ++++ +  V  +   PI      ++FK+T  K     +    K   +
Sbjct: 377 RED----------LNKLANLKVGEI-SKPISTENGILIFKLTEIKEPDKSQVDETKKTIL 425

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            ++      D+    +  L+ +  + ++  +++ 
Sbjct: 426 PFIKSQKFNDVYQMYVDSLRKKAKIKINKRVLEN 459


>gi|300857299|ref|YP_003782283.1| foldase protein [Clostridium ljungdahlii DSM 13528]
 gi|300437414|gb|ADK17181.1| foldase protein precursor [Clostridium ljungdahlii DSM 13528]
          Length = 341

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/394 (14%), Positives = 122/394 (30%), Gaps = 79/394 (20%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK--QEL 64
           K  +  VA  F+ V         + +       +STV +V  +K+            Q L
Sbjct: 2   KNIKRLVAAAFITVFAFSTAGCNMIEKTPEAIANSTVATVNGEKITRGDLDKDPNTIQLL 61

Query: 65  GMISQKIGFVVNSERARSVGLD---KKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-A 120
               Q+ G         +  +    ++ILDN+++   ++Q  +++ L  D  ++  ++  
Sbjct: 62  SQAKQQYGSDYAKNDEATSAIKTQKEQILDNMITTKVIEQKAKELKLLPDESKLKSDMDK 121

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           +      ++ K     F + L  +G  E+ +   +   L    +       +  S     
Sbjct: 122 KIDDIKKQNFKGDTSQFDAALKAQGFTEESFKTMFLAQLKTQAIETNISNYLAKS----- 176

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                                       ++  +  ++   KD Y                
Sbjct: 177 -------------------------VKVTDKQIKDYYNANKDKYT--------------- 196

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                                     P+   +  ++   + EA +    L KG+ F ++A
Sbjct: 197 ------------------------EQPDKMHLAHILVKTKDEAQKVKARLDKGEDFAKVA 232

Query: 301 EEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +E  +  +       LG  +       +   +     K+G  +  +  SFGY I      
Sbjct: 233 KEVSQDTATKDKGGDLGFVNYNDSGYDAQFMAGAKALKEGAISDPVQSSFGYHIIKCIKK 292

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +      F +VK DI  Q+   + S+ V +  + 
Sbjct: 293 QEYPVKDFNKVKDDIKKQLESDQKSKLVSQKVQE 326


>gi|148262224|ref|YP_001228930.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
 gi|146395724|gb|ABQ24357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
          Length = 310

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 5/167 (2%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            KR+    F   + E++ +IS+ ELQ  Y KNK+K+ + E      ++   + EA E  +
Sbjct: 112 KKRVVVEAFLKKKVEEEAKISDTELQDFYNKNKDKFKTGEQVKASHILVKTEPEAQEILK 171

Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            LK G  F +LA++     +      LG F K  +       ++F L K+G  + V+   
Sbjct: 172 QLKAGGNFDELAKKHSIDAAAAKGGDLGWFGKGAML-PDFEKAVFGL-KEGAISGVVKTK 229

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           FGY I  ++  +P+    F EVK  +   +   K  E  K+  + L+
Sbjct: 230 FGYHIIKLTGKRPAGIRPFDEVKDQLKAAILPEKQQEVFKKLKEDLK 276



 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 13/136 (9%)

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLVDFAGKDVKGKEV 430
            Q++ +    K + + + + + L  G + DE++++      +     + + GK       
Sbjct: 151 EQVKASHILVKTEPEAQEILKQLKAGGNFDELAKKHSIDAAAAKGGDLGWFGKG------ 204

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
           A +P  E+ +F +            V      Y  +++    PA  R  +EV   +K   
Sbjct: 205 AMLPDFEKAVFGL-----KEGAISGVVKTKFGYHIIKLTGKRPAGIRPFDEVKDQLKAAI 259

Query: 491 KTVKTAEEVSSKANQL 506
              K  E        L
Sbjct: 260 LPEKQQEVFKKLKEDL 275



 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 10/151 (6%)

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
             VK     VKT  E        +L+  K G NF ++ K            +        
Sbjct: 151 EQVKASHILVKTEPEAQE-----ILKQLKAGGNFDELAKKHSIDAAAAKGGDLGWFGKGA 205

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE-KDKFISYLTQMMN 599
              D    VF      +    ++    Y + K+T  +     P  E KD+  + +     
Sbjct: 206 MLPDFEKAVFGLKEGAI-SGVVKTKFGYHIIKLTGKRPAGIRPFDEVKDQLKAAILPEKQ 264

Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           +++   +   LK    +T+ +++++    G+
Sbjct: 265 QEVFKKLKEDLKKSAKLTIKEDVLKTLDGGK 295


>gi|119356179|ref|YP_910823.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353528|gb|ABL64399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 700

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 94/691 (13%), Positives = 206/691 (29%), Gaps = 125/691 (18%)

Query: 28  WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI-GFVVNSERARSVGLD 86
           WG++ + FS         V  + +  + +   + +  G   +   G  +       +   
Sbjct: 30  WGMNFSGFSGKKRDIAGKVNGKDISAAQYEEVYNEISGNFRRTNPGAEITP--VTELEFR 87

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP-------LFHGKDNKFSHDVFVS 139
           ++  + +V    L++     G+      V   +            F              
Sbjct: 88  QQAWNIVVDQTLLEEQFAKFGITVQDQEVVESLDSPEPPMIIRQNFSDSTGSIDRKK--- 144

Query: 140 RLAREGINEK------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD------------- 180
            L     + K      +      + L    ++      +R +   LD             
Sbjct: 145 -LDVARRDPKNKDLWLQLEKMVQRELKVNKLIRALQPMVRVTGRELDDIVRRNFGRFSAS 203

Query: 181 --------------------QAKRFYFEN---------RSVDYIVLNNRHVPAIADPSNA 211
                               + +++Y E+         RS DY+          +    +
Sbjct: 204 FVPVPLSFAGTDTSFPVKEDEIQKYYNEHKELLKQLPSRSADYVFFPLTPSSKDSSSVRS 263

Query: 212 VLTQWFEK-----YKDNYR-----APEYKRISYILFDVHEKEKKIEISNDELQA------ 255
            L     +        +Y       P    + Y   +       I  S   L+A      
Sbjct: 264 ELESLRSEFSAAVNDTDYVKVQSDRPNGVNVLYNRANFSLPAGSIVFSPANLKAGAIVGP 323

Query: 256 -----EYE--KNKEKYFSPEIRTVEQLVFP----NQKEADEAFQS-------LKKGKKFI 297
                EY   K KE   +  I     ++      N++E ++  +        L+ G  F 
Sbjct: 324 VADRGEYRLLKIKEVRTAQPIARASHILLRFNPGNKEEVEKVRERMVMIFKNLQAGVPFE 383

Query: 298 QLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA    E+ G ++    LG F++E +     + ++FS    G     +   FG  I  V
Sbjct: 384 TLAGKYSEDPGSAVQGGDLGWFTRESML-PEFSAAVFS-GTPGAVVKPVQTKFGLHIIKV 441

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           +    +  ++ + V+    +   +  A         + ++       +++ +  EK+V  
Sbjct: 442 TGFDQTAVIASEIVRTIRPSTETVDSARRLAMAFQMQAKDK-----GLEKSASTEKLV-- 494

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
               V   G   K   +A I + +++    F  +        V   +  +  +++     
Sbjct: 495 ----VGKTGDFGKHTLIADIGFSDKI--TAFAFNGKEGALSDVIETEKGFYVMKLTGVND 548

Query: 474 ARDRKLE-EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL-GASLLTT 531
              R+L+ ++   +  +   +K    +  K   L L   + G     I     G  ++T 
Sbjct: 549 TGYRRLDADLKKRITAELVRLKKEPVLEKK---LSLNAKQSGATLDKIAAAYPGTVVVTA 605

Query: 532 NQINRMDNENKFFGYD-GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQE 586
           + I  +D     +G+D  + +  S   E     P++    Y +  ++   +         
Sbjct: 606 DDIRWVDGFIPGYGFDQPLVEAMSAMTEGKLSGPVKTNDGYAIVLLSKKNMPAERDVEAA 665

Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           K  F   + Q     L     A +K    + 
Sbjct: 666 KTAFTPKIIQDKLNRLFTEYFATIKKNAVIE 696


>gi|118581987|ref|YP_903237.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
 gi|118504697|gb|ABL01180.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
          Length = 300

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 5/167 (2%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            KR+    F   + E   +IS+ +L+  Y++N +K+ + E      ++   +KEA E   
Sbjct: 109 KKRLIVEAFLKKKVETDAQISDADLKKFYDQNIDKFKAGEQIRASHILVKTEKEAKEILA 168

Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            LK G  F +LA +      S     LG F K  +   +   +  +L K+G  + V+   
Sbjct: 169 QLKGGAAFEELARKHSVDSSSAKGGDLGWFGKGAMV-PAFERAALAL-KEGQVSDVVKSD 226

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           FG+ I  ++  +P+ T  F EVK  I   +  +K  E  ++    L+
Sbjct: 227 FGFHIIKLTGKRPAGTRPFDEVKDQIKAALMPSKQQEIFQKIKDELK 273



 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 13/136 (9%)

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI--VSIDLPLVDFAGKDVKGKEV 430
            Q+R +    K +++ K +   L  G + +E++R+  +   S     + + GK       
Sbjct: 148 EQIRASHILVKTEKEAKEILAQLKGGAAFEELARKHSVDSSSAKGGDLGWFGKG------ 201

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
           A +P  E+    +        +   V   D  +  +++    PA  R  +EV   +K   
Sbjct: 202 AMVPAFERAALAL-----KEGQVSDVVKSDFGFHIIKLTGKRPAGTRPFDEVKDQIKAAL 256

Query: 491 KTVKTAEEVSSKANQL 506
              K  E      ++L
Sbjct: 257 MPSKQQEIFQKIKDEL 272



 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 47/145 (32%), Gaps = 10/145 (6%)

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
             ++     VKT +E        +L   K G  F ++ +       +    +        
Sbjct: 148 EQIRASHILVKTEKEAKE-----ILAQLKGGAAFEELARKHSVDSSSAKGGDLGWFGKGA 202

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE-KDKFISYLTQMMN 599
                     +     V    +++   + + K+T  +     P  E KD+  + L     
Sbjct: 203 MVPAFERAALALKEGQV-SDVVKSDFGFHIIKLTGKRPAGTRPFDEVKDQIKAALMPSKQ 261

Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +++   +   LK    +TV ++ + 
Sbjct: 262 QEIFQKIKDELKKSAKITVKEDALN 286


>gi|153952806|ref|YP_001393571.1| peptidylprolyl isomerase [Clostridium kluyveri DSM 555]
 gi|219853471|ref|YP_002470593.1| hypothetical protein CKR_0128 [Clostridium kluyveri NBRC 12016]
 gi|189037913|sp|A5N4J2|PRSA_CLOK5 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|254783411|sp|B9DY54|PRSA_CLOK1 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|146345687|gb|EDK32223.1| PrsA [Clostridium kluyveri DSM 555]
 gi|219567195|dbj|BAH05179.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 341

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/392 (13%), Positives = 118/392 (30%), Gaps = 83/392 (21%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVS----GSSTVVSVGRQKVPFSSFINSWK--QELGM 66
           + ++ +  L   F+       +   +      STV  V  +K+  S         Q +  
Sbjct: 4   IGRLAVTALIAVFIFSVTGCNMIEKTPEAIAKSTVAEVNGEKITRSDLDKDPNTIQLITQ 63

Query: 67  ISQKIGFVVNSERARSVGLD---KKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-ARS 122
           + Q+ G            +    ++ILD+L++   + Q  +++ L  D  ++  ++  + 
Sbjct: 64  VKQQYGENYKENEDAVNTIKTQKEQILDDLITNKVVAQKAKELKLLPDETKLKSDMETQI 123

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
                ++     + F + L  +G  E+ +   +   L     +      +          
Sbjct: 124 AQLKKQNFNDDAEQFNTALKAQGFTEESFKAMFLSQLRTQQTLEKVTESIS--------- 174

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
                                     ++  +  ++   K  Y                  
Sbjct: 175 ---------------------KNIKITDKEIEDYYNTNKSKYT----------------- 196

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
                                   P    +  ++   + EA +  + L  G+ F ++A+E
Sbjct: 197 ----------------------EQPNKMHLAHILVKTEDEAKKVKKRLDDGEDFAKVAKE 234

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIF---SLA-KKGDFTPVIHGSFGYVIAHVSNIKP 358
             +  +    G        D S  D+ F   +LA K+G  +  +  SFGY I      + 
Sbjct: 235 VSQDTASKDNGGDLGTVNYDNSGYDADFMAGALALKEGAISAPVKSSFGYHIIKCIKKEE 294

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
               +   VK  I  Q+   K +  V +  + 
Sbjct: 295 YPVKALSAVKDQIKTQLESDKKNSLVSQKIQE 326


>gi|254495144|ref|ZP_05108068.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
 gi|85819494|gb|EAQ40651.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
          Length = 695

 Score =  140 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 96/722 (13%), Positives = 215/722 (29%), Gaps = 133/722 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           L  IR+  R+    I + +    F++        F+ S  + V  V  + +    F    
Sbjct: 4   LSKIRE--RSMFLIIIIGLALFAFVLDPSTLGDFFNSSKVNEVGEVDGEAISRQEFA--- 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE-- 118
             EL    Q+ G   +  +A      K + DN+V        + + G+      VW E  
Sbjct: 59  -NELESYKQQTGGRASEMQAA-----KTVWDNIVRKKIYKNQLNEAGITIGEADVWNEVV 112

Query: 119 ----IARSPLFHGKDNKFSHDVFVSRLAREGINEKE-------YIDHYTKMLSRTDVVGM 167
               +  +P +  +   F  + F   LA    N ++       Y++             +
Sbjct: 113 NAPFVQNNPQYQNEVGLFDENKFKQFLADTKENNEQLWAQWSSYMNQVRDNAETNTFNNL 172

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRA 226
              G+  S    +          +  ++ +    +   +     + +  + + +KD ++ 
Sbjct: 173 VTAGLGASLKEGEMQYLIDNTKLNGQFVYVPYTSIADSLVKLKKSEVEAYIQSHKDQFQV 232

Query: 227 PEYKRISY--------------ILFDVHEKEKKIEISNDEL------------------- 253
              + ISY              I+ DV   ++  + +++++                   
Sbjct: 233 EASRDISYVKFDIVATPEDEQAIMLDVAGLKEDFKTTDNDVLFLSENDSDTGLNTGYVFK 292

Query: 254 --------QAEYEKNKEKYFSP-------------------EIRTVEQLVFP-------- 278
                      +  N+     P                   +      ++ P        
Sbjct: 293 SNVNAIIADDLFAANEGDIVGPYKDLNAIKLSKITEVTQLPDSVKASHILIPFVGAQRVA 352

Query: 279 -----NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSL 325
                 ++EA +   SL     ++  KF  LA+E     +    G     Y  +    + 
Sbjct: 353 ADVTRTEEEAKQLADSLLAVVKRRKSKFADLAKEFSSDQASAVKGGEYDWYNYNRMTPAF 412

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKDIANQMRITKASEKV 384
            D  F   KKGD   V+   FG+ +  + + K     +      KDI   +   +    V
Sbjct: 413 RDFTFE-GKKGDM-DVVKTPFGFHVIKIDDQKNKQKVIKMATFSKDI---VPSEETENAV 467

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
               +     ++   +  + ++      ++       G  V  + V  I  + Q++   F
Sbjct: 468 FRQAEEFALAVSKENNFFDAAKE-----LNYKPKPAVGLKVLDESVPGIGNQRQIVSWAF 522

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
             +  ++      L     +   +          + +  + V+      K A  ++ K N
Sbjct: 523 NNETDVNAFKRFDLEGSHVVAF-VTGIEEEGLMSVNKATSKVRPILMNEKKAALIAEKFN 581

Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKC 562
                    G +  +I K    SL T + I          G +   +  +++  +  +  
Sbjct: 582 ---------GSDLPEIAKANNTSLRTASNITLKSPTLSGVGVEPKIVGAMYNAEIGKLYN 632

Query: 563 FPIENGLSYVVFKVT-NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
             +E       FK+T   +   +   D     + +   +         +K    V  +  
Sbjct: 633 -KVEGNRGVFAFKLTSKEEPTALPNYDANRKRIAEARKRQTFKMY-EAIKKASDVEDNRA 690

Query: 622 LI 623
            +
Sbjct: 691 FM 692


>gi|225850985|ref|YP_002731219.1| ppic-type ppiase domain protein [Persephonella marina EX-H1]
 gi|225646600|gb|ACO04786.1| ppic-type ppiase domain protein [Persephonella marina EX-H1]
          Length = 325

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 61/387 (15%), Positives = 129/387 (33%), Gaps = 80/387 (20%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           V    L ++   +   G    +   + +  V  VG  ++         K  L M      
Sbjct: 4   VIIFLLGLITSVYAYEGFGWNIDPSTKNKVVAKVGDVEITEMEVQRMMKILLPM--NFYH 61

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR-SPLFHGKDNK 131
             +  E+ +   + +K + NL+    L    +  GL+     +   + +    +      
Sbjct: 62  RNITEEKLKE--IREKAIQNLIYRELLYYEAKKKGLKVTEKEINNLMDQLIKQYK----- 114

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
            S +     L + G+  + +     K L    ++  +                       
Sbjct: 115 -SKENLEKLLKQTGLTIEGFKKELEKRLLVDKLIKKY----------------------- 150

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
                       AI   ++  L +++EK KD ++ P   ++ YI         K++ S+ 
Sbjct: 151 ------------AIVSLTDKDLKEYYEKNKDKFKEPASVKVRYIYI-------KVDPSD- 190

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--- 308
                          P+ R         +++A +A++ +K+GK F  +A      LS   
Sbjct: 191 ---------------PKGRE------KAREKAKKAYKEIKEGKDFGDVAYRYSDDLSRIK 229

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
              +G   K   P   + + I+ L   G  + +I    G  I  + + +P   V ++E+K
Sbjct: 230 GGDIGYVHKGRFPKQ-IEEEIYKL-DVGQVSKIIETDTGLHIVKIEDKRPPRLVPYEEIK 287

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFL 395
             +  ++       K  E  K  ++ L
Sbjct: 288 DKLKKELTEVMQERKFNELIKDAKKNL 314



 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
           K  E+   KA +   +  KEGK+F D+       L      +        F      +++
Sbjct: 192 KGREKAREKAKK-AYKEIKEGKDFGDVAYRYSDDLSRIKGGDIGYVHKGRFPKQIEEEIY 250

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE-KDKFISYLTQMMNKDLLDSVIAY 609
              V  V    IE      + K+ + +     P +E KDK    LT++M +   + +I  
Sbjct: 251 KLDVGQVSKI-IETDTGLHIVKIEDKRPPRLVPYEEIKDKLKKELTEVMQERKFNELIKD 309

Query: 610 LKSQYSVTVHDN 621
            K    V ++++
Sbjct: 310 AKKNLKVEIYED 321



 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 86/270 (31%), Gaps = 57/270 (21%)

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
            YE  K+     E   +  L+       D+  +  K  +   +L ++ G ++        
Sbjct: 87  YYEAKKKGLKVTEK-EINNLM-------DQLIKQYKSKENLEKLLKQTGLTIEGFKK-EL 137

Query: 316 SKEYIPDVSLAD-SIFSLA----------KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            K  + D  +   +I SL            K  F         Y+   V    P      
Sbjct: 138 EKRLLVDKLIKKYAIVSLTDKDLKEYYEKNKDKFKEPASVKVRYIYIKVDPSDPKG---- 193

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLVDFAG 422
                         KA EK K+ YK ++E    G    +++ R    +  I    + +  
Sbjct: 194 ------------REKAREKAKKAYKEIKE----GKDFGDVAYRYSDDLSRIKGGDIGYVH 237

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
           K    K++    YK  +            +   +   D     V+I++  P R    EE+
Sbjct: 238 KGRFPKQIEEEIYKLDV-----------GQVSKIIETDTGLHIVKIEDKRPPRLVPYEEI 286

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
              +KK+   V        K N+L+ +  K
Sbjct: 287 KDKLKKELTEVMQER----KFNELIKDAKK 312


>gi|331268339|ref|YP_004394831.1| parvulin-like peptidyl-prolyl isomerase [Clostridium botulinum
           BKT015925]
 gi|329124889|gb|AEB74834.1| parvulin-like peptidyl-prolyl isomerase [Clostridium botulinum
           BKT015925]
          Length = 348

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 58/407 (14%), Positives = 120/407 (29%), Gaps = 84/407 (20%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW- 60
           ++ IRK     VA   L V  +  +   + +        + V  VG +K+      + + 
Sbjct: 1   MKNIRK----LVATAVLCVFTMSAVGCSMIEKTPEAIKKTVVAKVGDKKITKGELDSHFG 56

Query: 61  -KQELGMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVW 116
            K+ L    Q+ G            + +    +   + S   L Q  E + L  +   + 
Sbjct: 57  VKRYLDQFKQQYGENFEQNPQVKEQVKQIKIAVAKQIASQEALKQEAEKLKLVPNDQELK 116

Query: 117 GEI-ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
            E+  +   F  + N        S L   G+ + ++       +    +           
Sbjct: 117 KEMDKKIQEFKKEQNIKDDKGLDSALKMSGLQKSDFEKLIKDNIIIEKLQN--------- 167

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----RAPEYKR 231
                                     +       +  + +++   KD Y    + P    
Sbjct: 168 -------------------------ELTKNIKVDDKEIEKYYNTNKDKYPKDPKNPTKIH 202

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +++I+      E                                    + E     + L 
Sbjct: 203 VAHIILQAKTPEDDA-------------------------------KAKDEIKSIKEELN 231

Query: 292 KGKKFIQLAEEQGKSLS---DISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           KG  F  LA++  +  S      LGS        D    ++  +L K G  +  +   FG
Sbjct: 232 KGGDFAVLAKKYSQDGSKDKGGDLGSVPTVNSGFDQDFMNAALTL-KDGQISDPVKTQFG 290

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           Y I  +   + +   +  EVK  +   +   K +E +K  +K +++ 
Sbjct: 291 YHIIKMIKREEAPCKTLAEVKNQVKEDILQNKKNEVIKNKFKEIQDK 337


>gi|304439703|ref|ZP_07399603.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371809|gb|EFM25415.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 261

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 8/170 (4%)

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
           +  E    SY L    +  + +EI++++L+  Y+ +K+ + +        ++  ++  A 
Sbjct: 84  KTKETLLKSYAL---GKLLETVEITDEDLKNYYDNHKDNFKNNASVEASHILVEDESVAK 140

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           E  + L  G  F +LA+E     S     +LG F+K  +      D+ F++   G+ +  
Sbjct: 141 EIKEKLNNGADFKELAKEYSNCPSKENGGNLGVFTKGQMVK-EFEDAAFNMG-VGEISDP 198

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +   FGY I  V+N       +F+E K DI   +R  K  +  K   +RL
Sbjct: 199 VKTQFGYHIIKVTNKNDESVRTFEEAKPDIERLVRREKEKDLYKHTVERL 248


>gi|302389639|ref|YP_003825460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermosediminibacter
           oceani DSM 16646]
 gi|302200267|gb|ADL07837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermosediminibacter
           oceani DSM 16646]
          Length = 297

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/406 (13%), Positives = 119/406 (29%), Gaps = 121/406 (29%)

Query: 4   IIRKASRT--WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
            IR+ + T   +A   L ++                S    V  V  +++      +   
Sbjct: 6   KIRRKTVTYLIIATAILALIAGC----------SPGSSKEVVARVNGEEISKDELYDVM- 54

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                                  + K+ LD LVS   +D   +   +      +  E+ +
Sbjct: 55  --------------------VKLVGKEALDYLVSQKIIDLEAKKQNINVSEEDIQRELEK 94

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
              ++G +     + F   L   G + +EY       +    ++                
Sbjct: 95  VYEYYGGE-----EAFTQNLQMSGYSLEEYKKDLAMDIKIKKLLEP-------------- 135

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                                      +   +  +FE+ KDN+   +             
Sbjct: 136 -----------------------KISITEEEIKSYFEENKDNFAREKQV----------- 161

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
                                            ++  N+++A+E    LK G+ F +LA+
Sbjct: 162 -----------------------------RARHILVENEEKANEVIAKLKSGEDFAELAK 192

Query: 302 EQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +     +       LG F +  +      ++ FSL K G+ +  +   +GY I  V  IK
Sbjct: 193 QYSTDTATKEKGGDLGFFGRGDMVK-EFEEAAFSL-KVGEISSPVKTQYGYHIIKVEEIK 250

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
            +   +++E K  I + +   K  ++     + L +   +   + +
Sbjct: 251 EAQEANYEESKDKIKDILLNQKVQQEYSTWMQELYQQYEVENLLAD 296


>gi|298504157|gb|ADI82880.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type
           [Geobacter sulfurreducens KN400]
          Length = 313

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 9/176 (5%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            KR+    +   + E+++++S++EL+  Y++NK+K+ S        ++  ++K A E  +
Sbjct: 112 KKRVVVEAYLKKKVEEQVQVSDEELKKFYDQNKDKFKSGAQIKASHILVRDEKLAQEIVK 171

Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            LK G  F +LA++      +     LG FSK  +         F L K+G+ + ++   
Sbjct: 172 ELKGGANFEELAKKHSIDSAAAKGGDLGWFSKGNMV-PEFEKVAFGL-KEGETSGIVRTQ 229

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           FGY I  V+  +P+   +F+EVK  I   +   K  E      ++L+E +  G ++
Sbjct: 230 FGYHIIKVTGKRPAGERTFEEVKDQIKAAVLPGKQQEVF----QKLKEDIKKGATI 281



 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 17/156 (10%)

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
            Q++ +    + ++  + + + L  G + +E++++  I S      D  G   KG  V  
Sbjct: 151 AQIKASHILVRDEKLAQEIVKELKGGANFEELAKKHSIDSAAAKGGDL-GWFSKGNMV-- 207

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
            P  E++ F +        +   +      Y  +++    PA +R  EEV   +K     
Sbjct: 208 -PEFEKVAFGL-----KEGETSGIVRTQFGYHIIKVTGKRPAGERTFEEVKDQIKAAVLP 261

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNF---RDIGKNLG 525
            K  E         + E  K+G       D+ K LG
Sbjct: 262 GKQQEVFQK-----LKEDIKKGATISIKEDVLKGLG 292


>gi|39995127|ref|NP_951078.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39981889|gb|AAR33351.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
          Length = 313

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 9/176 (5%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            KR+    +   + E+++++S++EL+  Y++NK+K+ S        ++  ++K A E  +
Sbjct: 112 KKRVVVEAYLKKKVEEQVQVSDEELKKFYDQNKDKFKSGAQIKASHILVRDEKLAQEIVK 171

Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            LK G  F +LA++      +     LG FSK  +         F L K+G+ + ++   
Sbjct: 172 ELKGGANFEELAKKHSIDSAAAKGGDLGWFSKGNMV-PEFEKVAFGL-KEGETSGIVRTQ 229

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           FGY I  V+  +P+   +F+EVK  I   +   K  E      ++L+E +  G ++
Sbjct: 230 FGYHIIKVTGKRPAGERTFEEVKDQIKAAVLPGKQQEVF----QKLKEDIKKGATI 281



 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 17/156 (10%)

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
            Q++ +    + ++  + + + L  G + +E++++  I S      D  G   KG  V  
Sbjct: 151 AQIKASHILVRDEKLAQEIVKELKGGANFEELAKKHSIDSAAAKGGDL-GWFSKGNMV-- 207

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
            P  E++ F +        +   +      Y  +++    PA +R  EEV   +K     
Sbjct: 208 -PEFEKVAFGL-----KEGETSGIVRTQFGYHIIKVTGKRPAGERTFEEVKDQIKAAVLP 261

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNF---RDIGKNLG 525
            K  E         + E  K+G       D+ K LG
Sbjct: 262 GKQQEVFQK-----LKEDIKKGATISIKEDVLKGLG 292


>gi|218781644|ref|YP_002432962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763028|gb|ACL05494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 358

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 142/408 (34%), Gaps = 73/408 (17%)

Query: 19  VVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            ++    L W +  A  + +G+       V  V    +  +    +  Q  GM++   G 
Sbjct: 8   ALVIAMLLAWVIPGAALAEAGADDGSEKVVAVVNGASITQAELDQALMQ--GMLNATKGM 65

Query: 74  VVNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
            ++ E+A+        ++LD L+    L Q IE   + A  G +   ++           
Sbjct: 66  QLSPEQAQRFKSQYSGRVLDKLIMDELLSQEIEKRKITAAPGEMAKALSEQLELQ----- 120

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
                    L   G  +KEY +   K  ++      F+ G+       + A  +  E   
Sbjct: 121 ---------LMASGRTKKEYEESDLK--AKGQTWDQFIAGIAARP---EVAHMYLLEK-- 164

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKEKKIEISN 250
                +     P     ++A + ++++   +  +  PE  R S+ILF   + +       
Sbjct: 165 -----MAKTIAPEKVKVTDAEIRKFYDDNLESRFTKPEEVRASHILFGTKDAK------- 212

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLS- 308
                          + E +         +K+A E     KK G  F  LA E     S 
Sbjct: 213 ---------------TAEEKEA------IKKQAQEVLLKAKKPGADFAALAREYSSCPSK 251

Query: 309 --DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
                L  F+KE +     + + FS+ + G+ + ++   FGY I  V++  P+    F+ 
Sbjct: 252 EKGGDLNFFTKERMV-PEFSKAAFSM-EVGEISNLVETQFGYHIIKVTDKTPAEVRPFES 309

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFL---ALGTSMDEISRREKIV 411
               I   +   +  +++      L+E       G   D ++  +K  
Sbjct: 310 AALAIRKGLETQRVQQELMTLANGLKEKATITYPGVLPDSVAGEQKAT 357


>gi|304406731|ref|ZP_07388386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344264|gb|EFM10103.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
          Length = 362

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 13/241 (5%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP------SNAVLT 214
           R    G+  GG   + L          +      IV+++  + A          S   L 
Sbjct: 113 RQLYEGLLGGGRGKTQLDNLIDTELVKQEADKKGIVVSDADIAAELAVMVRRIGSEEALN 172

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           +  ++ +       Y  +   +      + +I I++ E++  Y +N E    PE      
Sbjct: 173 EALKQNQLT-VEDLYPDLIQQVRLRKLLQSRIHITDQEVRDYYTENLEYITQPEQVRASH 231

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIF 330
           ++   + EAD   + L  G  F  +A+++            LG F +  + D S  D+ F
Sbjct: 232 ILVETKAEADIIVKELNNGGDFATIAKQKSLDTGSKNAGGDLGYFERG-VMDQSFEDAAF 290

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           SL K G+ +  +   FGY I  V++ K + T +F+E K  I   +   K  E      + 
Sbjct: 291 SL-KVGEISKPVKSEFGYHIILVTDHKAAVTPTFEEEKATIREMLTTEKIYELAATFIEG 349

Query: 391 L 391
           L
Sbjct: 350 L 350



 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 14/150 (9%)

Query: 481 EVLTDVKKDWKTVKTAEEVSS-------KAN-QLVLEYSKEGKNFRDIGKNLGASLLTTN 532
           EV     ++ + +   E+V +       KA   ++++    G +F  I K       + N
Sbjct: 209 EVRDYYTENLEYITQPEQVRASHILVETKAEADIIVKELNNGGDFATIAKQKSLDTGSKN 268

Query: 533 QINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEK 587
               +   E            FS  V  +   P+++   Y +  VT+          +EK
Sbjct: 269 AGGDLGYFERGVMDQSFEDAAFSLKVGEI-SKPVKSEFGYHIILVTDHKAAVTPTFEEEK 327

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                 LT     +L  + I  L++Q  + 
Sbjct: 328 ATIREMLTTEKIYELAATFIEGLRAQAKIE 357


>gi|297521372|ref|ZP_06939758.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           OP50]
          Length = 160

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 65/161 (40%), Gaps = 2/161 (1%)

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
            +   L + G+   +Y       L+   ++    G         D+      + R V   
Sbjct: 2   RYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRVVREA 61

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
            ++   + A    +   +  ++E+ K+N+  PE  R+SYI  D      +  +S+ ++Q+
Sbjct: 62  TIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATM--QQPVSDADIQS 119

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
            Y+++++++  P+      +    + EA      L KG  F
Sbjct: 120 YYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDF 160


>gi|297622266|ref|YP_003703700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera
           radiovictrix DSM 17093]
 gi|297163446|gb|ADI13157.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera
           radiovictrix DSM 17093]
          Length = 398

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 110/356 (30%), Gaps = 87/356 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGAT 98
            + V+ +G ++V    F   +   L  ++ + G  ++       G L    L+   +   
Sbjct: 64  DAVVLELGGERVSAGDFEGRFNIALRNLAAQQGIPLDPVTLAQFGTLKPAFLEQFATERA 123

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L Q  E  GL      V  E+ ++    G++       + + LA+ G    E      ++
Sbjct: 124 LLQEAEARGLAPADEAVEAELEQARAAAGEN-------YEALLAQGGF---EDEAALREL 173

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +  +  +   V                                + A  +  +  ++ ++E
Sbjct: 174 IYESLALQGLV------------------------------DALEAEVEVGDEAVSAYYE 203

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             +  +   E                                              ++  
Sbjct: 204 ANQAQFERSEEV----------------------------------------CARHILVE 223

Query: 279 NQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           ++  A+     L+ G+ F +LA     + G +     LG   +         ++ F+  +
Sbjct: 224 DEATAEALLTRLEAGEDFGELARDNSTDPGSAPEGGDLGCLPRGVTV-PEFEEAAFA-TE 281

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            G+ T  +   FGY +  V    P+ T   +EV+  I  Q+R    +E++    + 
Sbjct: 282 VGETTGPVRSDFGYHLIRVYERNPAETAPLEEVRSQIEGQLRNEGLNERIASLVEA 337



 Score = 47.3 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 79/252 (31%), Gaps = 28/252 (11%)

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQK-EADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
           A  E+   +    +      L   ++  EA+        G+ +  L   QG    + +L 
Sbjct: 113 AFLEQFATERALLQEAEARGLAPADEAVEAELEQARAAAGENYEALLA-QGGFEDEAALR 171

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
               E +    L D++ +  + GD               VS    +    F+  ++  A 
Sbjct: 172 ELIYESLALQGLVDALEAEVEVGD-------------EAVSAYYEANQAQFERSEEVCAR 218

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
            + +       +   + L   L  G    E++R         P     G   +G  V   
Sbjct: 219 HILVED-----EATAEALLTRLEAGEDFGELARDNSTDPGSAPEGGDLGCLPRGVTV--- 270

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
           P  E+  F     +            D  Y  +++ E  PA    LEEV + ++   +  
Sbjct: 271 PEFEEAAFATEVGETTGPVRS-----DFGYHLIRVYERNPAETAPLEEVRSQIEGQLRNE 325

Query: 494 KTAEEVSSKANQ 505
              E ++S    
Sbjct: 326 GLNERIASLVEA 337


>gi|150014979|ref|YP_001307233.1| peptidylprolyl isomerase [Clostridium beijerinckii NCIMB 8052]
 gi|149901444|gb|ABR32277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 362

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 60/396 (15%), Positives = 127/396 (32%), Gaps = 79/396 (19%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           K  + +VA + +V + V  +   + +        + + +VG +K+         ++    
Sbjct: 20  KKLKKFVAALAMVTIAVSAMGCKMIEKTPEAIQKTVLATVGNEKITKGDLDKEMEKYTAQ 79

Query: 67  ISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHG----RVWGEI 119
           + Q+ G    S       L +   + LD+LV+   + Q   ++ L+        +V  +I
Sbjct: 80  LKQQYGDNYESNAQVKDQLQQAKKQELDSLVTQKVVLQKATELNLKPSDDDINKQVDDQI 139

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
           A+    + ++ +F      S L + G+ E +  D     +    V               
Sbjct: 140 AQIKSQYSEEGQF-----ESVLEQNGLTEDQLKDVVKNNVIMQAVQQ------------- 181

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD-NYRAPEYKRISYILFD 238
                                 +    + ++  +  ++ + KD  Y        S+IL  
Sbjct: 182 ---------------------DIVKDIEVTDDDVQTYYNENKDSKYTQGAGANASHILIA 220

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
               +  I+                               +  +A++    L  G  F +
Sbjct: 221 EKASDGSIDYD----------------------------ASLTKANDIKAKLDSGADFAK 252

Query: 299 LAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+E            SLG  +      V+     F   K+G+ +  +   FGY I   +
Sbjct: 253 LAKENSTDSGTKDNGGSLGFVAYNSTQLVAEFMDGFKNLKEGEISAPVKSQFGYHIIKAT 312

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            +K S    F++VK  I + +   K  + +      
Sbjct: 313 GLKDSQVTPFEQVKDQIKSSLLQQKQQDALSSKITE 348



 Score = 37.3 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 6/139 (4%)

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
           +   KAS+   +    L +   +   +D  +   K+          +G    G  +  + 
Sbjct: 218 LIAEKASDGSIDYDASLTKANDIKAKLDSGADFAKLAK---ENSTDSGTKDNGGSLGFVA 274

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDG---SYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
           Y    L   F       K+  ++ P      Y  ++      ++    E+V   +K    
Sbjct: 275 YNSTQLVAEFMDGFKNLKEGEISAPVKSQFGYHIIKATGLKDSQVTPFEQVKDQIKSSLL 334

Query: 492 TVKTAEEVSSKANQLVLEY 510
             K  + +SSK  +   + 
Sbjct: 335 QQKQQDALSSKITEWKTDL 353


>gi|39997524|ref|NP_953475.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39984415|gb|AAR35802.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
          Length = 351

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 127/359 (35%), Gaps = 77/359 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           ++ VV V    +  +    + K  +     ++   V  + A+   +++  +  L++   L
Sbjct: 59  AAVVVKVNGVAITRAEVDRAKKVLMS--QNRMTQPVTPDIAQK--VEEAAVSQLIAKELL 114

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKM 158
            Q      ++    ++   +++S        +F S + ++  L    + EK+      + 
Sbjct: 115 YQAGRKQEIKDLDKQIQERVSQSKA------RFPSQEEYLKTLKSMDMTEKDVETFARED 168

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L   +++                                  + V A    S+    +++ 
Sbjct: 169 LVINNLIE---------------------------------KDVVAKTTVSDEEAKKFYN 195

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
              D ++  E  + S+IL  V       +                               
Sbjct: 196 DNIDKFKRDETVKASHILIKVEPNASADD----------------------------KKK 227

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            +++A+   + +K G  F ++A+++     +     LG F K  +       + F++ K 
Sbjct: 228 AKEKAEAILKQVKGGADFAEVAKKESGCPSAPQGGDLGFFGKGQMV-PPFEKAAFAM-KP 285

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           G+ + V+   FGY I  +++ +P+ TV F+E K  I   ++  K  E + E  + L++ 
Sbjct: 286 GEVSDVVETQFGYHIIKLTDKRPAETVKFEETKDRIVQFLKQQKVQEGINEYVENLKKA 344



 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 5/116 (4%)

Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
           +L+  K G +F ++ K            +                 F+     V    +E
Sbjct: 235 ILKQVKGGADFAEVAKKESGCPSAPQGGDLGFFGKGQMVPPFEKAAFAMKPGEV-SDVVE 293

Query: 567 NGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
               Y + K+T+ +        + KD+ + +L Q   ++ ++  +  LK    + +
Sbjct: 294 TQFGYHIIKLTDKRPAETVKFEETKDRIVQFLKQQKVQEGINEYVENLKKAAKIEM 349


>gi|330889993|gb|EGH22654.1| periplasmic folding chaperone [Pseudomonas syringae pv. mori str.
           301020]
          Length = 208

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 69/209 (33%), Gaps = 5/209 (2%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ IR  S+ W+AK  + ++       G+     + S       V  + +  +    + 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                     ++Q++G   +        L +     L+    L Q   D         + 
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESAPKGLIDRKLLLQGATDAKFSFSDAALD 120

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
            ++ ++P F   D KFS D F   + + G +  ++     + +    V     G    ++
Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
             +D   R   + R    + L        
Sbjct: 180 AQVDAFARLEKQTRDFASLTLPADTTAGK 208


>gi|78224731|ref|YP_386478.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
 gi|78195986|gb|ABB33753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
          Length = 323

 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 5/167 (2%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            KR+    F   + E++ ++S++E++  YE+NK+K+ +        ++  ++ EA +  +
Sbjct: 120 KKRVVVEAFLKKKVEEQAKVSDEEMKKFYEENKDKFKTGPQVHASHILMKSEDEAQKVLK 179

Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            LK+G  F +LA++      +     LG FSK  +        +F L K+G+ + ++   
Sbjct: 180 ELKEGGNFEELAKKHSIDSAAAKGGDLGWFSKGSMV-PEFEKVVFGL-KEGETSGIVKTK 237

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           FGY I  ++  +P+   +F EVK+ +   +  +K  E  ++    ++
Sbjct: 238 FGYHIIKLTGKRPAGIRTFDEVKEQLRAAILPSKQQEVFQKLKDDIK 284



 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 59/160 (36%), Gaps = 11/160 (6%)

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
           K +++ +++ + L  G + +E++++  I S      D  G   KG  V   P  E+++F 
Sbjct: 169 KSEDEAQKVLKELKEGGNFEELAKKHSIDSAAAKGGDL-GWFSKGSMV---PEFEKVVFG 224

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
           +        +   +      Y  +++    PA  R  +EV   ++      K  E     
Sbjct: 225 L-----KEGETSGIVKTKFGYHIIKLTGKRPAGIRTFDEVKEQLRAAILPSKQQEVFQKL 279

Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
            + +  +   +     D+ K +G +          ++   
Sbjct: 280 KDDI--KKGAKVTIKEDVLKGIGGAAAEKPAPAGPESTPA 317


>gi|298506467|gb|ADI85190.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           sulfurreducens KN400]
          Length = 351

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 127/359 (35%), Gaps = 77/359 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           ++ VV V    +  +    + K  +     ++   +  + A+   +++  +  L++   L
Sbjct: 59  AAVVVKVNGVAITRAEVDRAKKVLMS--QNRMTQPMTPDIAQK--VEEAAVSQLIAKELL 114

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKM 158
            Q      ++    +V   +++S        +F S + ++  L    + EK+      + 
Sbjct: 115 YQAGRKQEIKDLDKQVQERVSQSKA------RFPSQEEYLKTLKSMDMTEKDVETFARED 168

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L   +++                                  + V A    S+    +++ 
Sbjct: 169 LVINNLIE---------------------------------KEVVAKTTVSDEDAKKFYN 195

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
              D ++  E  + S+IL  V       +                               
Sbjct: 196 DNIDKFKRDETVKASHILIKVEPNASADD----------------------------KKK 227

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            +++A+   + +K G  F ++A+++     +     LG F K  +       + F++ K 
Sbjct: 228 AKEKAEAILKQVKGGADFAEVAKKESGCPSAPQGGDLGFFGKGQMV-PPFEKAAFAM-KP 285

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           G+ + V+   FGY I  +++ +P+ TV F+E K  I   ++  K  E + E  + L++ 
Sbjct: 286 GEVSDVVETQFGYHIIKLTDKRPAETVKFEETKDRIVQFLKQQKVQEGINEYVENLKKA 344



 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 5/116 (4%)

Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
           +L+  K G +F ++ K            +                 F+     V    +E
Sbjct: 235 ILKQVKGGADFAEVAKKESGCPSAPQGGDLGFFGKGQMVPPFEKAAFAMKPGEV-SDVVE 293

Query: 567 NGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
               Y + K+T+ +        + KD+ + +L Q   ++ ++  +  LK    + +
Sbjct: 294 TQFGYHIIKLTDKRPAETVKFEETKDRIVQFLKQQKVQEGINEYVENLKKAAKIEM 349


>gi|222056790|ref|YP_002539152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
 gi|221566079|gb|ACM22051.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
          Length = 308

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 9/202 (4%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           RI    F   + E++ +I + ELQ  Y KNKEK+ + E      ++   + EA E  + L
Sbjct: 112 RIIVEAFLKKKVEEQAKIGDAELQDFYNKNKEKFRTGEQVRASHILVKTEPEAQEILKQL 171

Query: 291 KKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           K G  F +LA++Q    +      LG F K  +      +++F L K+G  + ++   +G
Sbjct: 172 KAGGNFEELAKKQSIDAAAAKGGDLGWFGKGSML-PEFENAVFGL-KEGATSGIVQTKYG 229

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y I  ++  +P+      EVK+ I   +   K  E      K+L+E L  G  +      
Sbjct: 230 YHIIKLTGKRPAGVRPLDEVKEQIKAAILPEKQQEVF----KKLKEDLKKGAKVTVKEDA 285

Query: 408 EKIVSIDLPLVDFAGKDVKGKE 429
            K +  + P      +     +
Sbjct: 286 LKTLDGEKPADKSNAQPPAPDK 307



 Score = 44.6 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 11/152 (7%)

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
             V+     VKT  E        +L+  K G NF ++ K            +        
Sbjct: 149 EQVRASHILVKTEPEAQE-----ILKQLKAGGNFEELAKKQSIDAAAAKGGDLGWFGKGS 203

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE-KDKFISYLTQMMN 599
              +  + VF           ++    Y + K+T  +     P+ E K++  + +     
Sbjct: 204 MLPEFENAVFGLKEGATSGI-VQTKYGYHIIKLTGKRPAGVRPLDEVKEQIKAAILPEKQ 262

Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
           +++   +   LK    VTV ++ + + LDGEK
Sbjct: 263 QEVFKKLKEDLKKGAKVTVKEDAL-KTLDGEK 293



 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 13/136 (9%)

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLVDFAGKDVKGKEV 430
            Q+R +    K + + + + + L  G + +E+++++     +     + + GK       
Sbjct: 149 EQVRASHILVKTEPEAQEILKQLKAGGNFEELAKKQSIDAAAAKGGDLGWFGKGS----- 203

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                  +    VFG  +  +    +      Y  +++    PA  R L+EV   +K   
Sbjct: 204 ----MLPEFENAVFGLKEGATSG--IVQTKYGYHIIKLTGKRPAGVRPLDEVKEQIKAAI 257

Query: 491 KTVKTAEEVSSKANQL 506
              K  E        L
Sbjct: 258 LPEKQQEVFKKLKEDL 273


>gi|322417708|ref|YP_004196931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320124095|gb|ADW11655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 308

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 5/159 (3%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            KR+    F   + E    +S+ ELQ  Y KNK+K+ S        ++  ++ EA E  +
Sbjct: 110 KKRVIVEAFLKKKIEDSGVVSDAELQDYYNKNKDKFKSDAQIRASHILVKSEAEAQEIQK 169

Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            LK G  F +LA++    G +     LG FSK  +         F L K+G+ + ++   
Sbjct: 170 QLKAGASFEELAKKHSMDGAAQKGGDLGWFSKGSMI-PEFESVAFGL-KEGETSGIVKTQ 227

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
           FGY I   +  +P+   SF+EVK  I   +  TK  E  
Sbjct: 228 FGYHIIKQTGKRPAGVRSFEEVKDQIKAALLPTKQQETF 266



 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 13/127 (10%)

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR--EKIVSIDLPLVDFAGKDVKGKEV 430
            Q+R +    K + + + +++ L  G S +E++++      +     + +  K       
Sbjct: 149 AQIRASHILVKSEAEAQEIQKQLKAGASFEELAKKHSMDGAAQKGGDLGWFSKG------ 202

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
           + IP  E + F +        +   +      Y  ++     PA  R  EEV   +K   
Sbjct: 203 SMIPEFESVAFGL-----KEGETSGIVKTQFGYHIIKQTGKRPAGVRSFEEVKDQIKAAL 257

Query: 491 KTVKTAE 497
              K  E
Sbjct: 258 LPTKQQE 264


>gi|307265095|ref|ZP_07546655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919893|gb|EFN50107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 301

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 110/385 (28%), Gaps = 113/385 (29%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +  + F ++ +   +   +    V +V  + +  + +  ++ Q    I     +  +   
Sbjct: 5   IALLLFFVFIVFLTVSCSTKKDVVATVNGENITNAEYKKAFDQVKAQIESSPQYTKDIWD 64

Query: 80  ARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
               G      + + +LD+L++   L Q      +      +  E  +    +    K  
Sbjct: 65  QDYQGKKFLDVVKENVLDSLIAQKLLVQEALKNNITVTDKEIADEYQKEKEVNKDITKED 124

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
              +                     L    +   +   ++                    
Sbjct: 125 VKNY---------------------LLINKLFDEYTKDVKV------------------- 144

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
                          +   L +++E  K+ +                             
Sbjct: 145 ---------------TEEELKKYYEDNKEQF----------------------------- 160

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----D 309
                         E+     ++  ++K A++ +  L KG+ F  LA+E     +     
Sbjct: 161 --------------EVVKASHILVADEKTAEDIYNRLMKGEDFATLAKEYSIDTATKDQG 206

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG F    +        +FSL KKG+ +  +   +GY I     I       F EVK 
Sbjct: 207 GDLGEFPHGVMV-SEFDQVVFSL-KKGEISKPVKTDYGYHIIKSEGIT---IKPFDEVKD 261

Query: 370 DIANQMRITKASEKVKEDYKRLEEF 394
            I   +   K ++ +KE Y  LE+ 
Sbjct: 262 AIEGYLLDDKKNQVIKEKYDALEKA 286


>gi|313676103|ref|YP_004054099.1| ppic-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
           DSM 4126]
 gi|312942801|gb|ADR21991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
           DSM 4126]
          Length = 703

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/620 (12%), Positives = 203/620 (32%), Gaps = 70/620 (11%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIW---GLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
              +R    + +    + +  + FL+    G    L     S+ V  +  + +    +  
Sbjct: 4   FNTLRVKMGSVLI-ALIGLSILAFLLTDLLGPDSMLLGGGRSNDVGEIAGKTINLPEYQR 62

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
             ++         G   + +   S  + ++  D L+      +  +++GLE  +  +   
Sbjct: 63  KVEEFRNNFRAGNGRAPSDQEMNS--IRQQAWDFLIIEKAFQEQYDELGLEVTNEELVDM 120

Query: 119 IARSPL-------FHGKD-NKFSHDVFVSRLAREGINEK-------EYIDHYTKMLSRTD 163
           +    +       F   +  +F+ +  V+ +                +        +R  
Sbjct: 121 VQGDNISPIVKRNFTNPETGEFNKEQVVNMIRNIAQAPAEQQAQWYSFESSLVPARARAK 180

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN-RHVPAIADPSNAVLTQWFEKYKD 222
              +  G    +    ++A +   EN  V+Y+ +     V ++  P+++ L  ++ ++KD
Sbjct: 181 YDELLGGSTYITKAEAERAYKKETENAEVEYLYVPFYSVVDSLVTPTDSELKSYYNEHKD 240

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
            Y+    + ISYI  ++    +   +  +E++                            
Sbjct: 241 QYKTDASRTISYISIELLPSGEDSTMMREEIEEL-------------------------- 274

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
               FQ +     F +L  ++  S     +    K    + ++        K+GD     
Sbjct: 275 -KTEFQKVDDDSAFARLNSDRSNSYRTYPIAQLPKILASNTNI-------IKEGDVLGPF 326

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
                YV+   S I      S +     I  +    +A  + +++ + + +    G    
Sbjct: 327 IDEGAYVLYKASKIFEDTVSSVKASHILIEAEDDSDEADAQARKEAREVLQKAQSGQDFA 386

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
           E+++               G   +G+ V      ++    VF K      +  +    G 
Sbjct: 387 ELAKDFSD-GPSATRGGDLGWFREGQMV------DEFNEAVFAKSGTGVINEVIKTQYG- 438

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
           Y  +++ E   A+  ++  +  D+     T  T + +  KA+ L    +K    F    +
Sbjct: 439 YHIIKVTEEKTAKTYEIATIHRDIIP---TETTRDRLYRKAD-LFAASNKNYAEFTAAAE 494

Query: 523 NLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
               S+ ++ +++         G   + +   F+   E       E    +VV  +T+  
Sbjct: 495 ENNYSVRSSGKMSPNQRSIGTLGSAREIVRWAFTDASEGKVSDVFETNTHFVVAVLTSET 554

Query: 581 VGPVQEKDKFISYLTQMMNK 600
                +  +  + +++ + +
Sbjct: 555 EKGTSDFKEVKALVSRAVKE 574



 Score = 56.9 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 90/242 (37%), Gaps = 36/242 (14%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-------KKGKKFIQ 298
           I+++ ++    Y          EI T+ + + P +   D  ++         K   +F  
Sbjct: 442 IKVTEEKTAKTY----------EIATIHRDIIPTETTRDRLYRKADLFAASNKNYAEFTA 491

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADS------IFSLAKKGDFTPVIHGSFGYVIAH 352
            AEE   S+     G  S       +L  +       F+ A +G  + V   +  +V+A 
Sbjct: 492 AAEENNYSVRSS--GKMSPNQRSIGTLGSAREIVRWAFTDASEGKVSDVFETNTHFVVAV 549

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           +++     T  F+EVK  ++  ++  +  E +KE    L        +++E++       
Sbjct: 550 LTSETEKGTSDFKEVKALVSRAVKEKQKGEIIKEKLSGL------SGTLNEMASAYGA-- 601

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
            D  +      ++    +  +    +++  +FG +  L+        +   + V++    
Sbjct: 602 -DANVYTSNDVNISSNSLPNVGQAPKVIGTIFGME--LNTQSQPLEANNGIVIVKVLNRT 658

Query: 473 PA 474
           PA
Sbjct: 659 PA 660


>gi|254479750|ref|ZP_05093031.1| PPIC-type PPIASE domain protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214034310|gb|EEB75103.1| PPIC-type PPIASE domain protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 271

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 106/355 (29%), Gaps = 113/355 (31%)

Query: 47  GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG------LDKKILDNLVSGATLD 100
             +K+  + +   ++Q    I     +  +       G      + + +LD+LV+   L 
Sbjct: 2   NGEKITNAEYQQIFEQVKEQIESAPTYTKDIWNQDYQGKKFLDFVKENVLDSLVAQKLLV 61

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q  +   +      V  E  +   F+ K  K                     +   + L 
Sbjct: 62  QEAKKKNITVTDKEVEEEYNKEKQFNSKVTK---------------------EQIREYLL 100

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
              ++                                           ++  L ++++++
Sbjct: 101 IDKLL----------------------------------AEYTKDVKVTDEELKKYYDEH 126

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           K+++                                           E+     ++  ++
Sbjct: 127 KESF-------------------------------------------EVMRARHILVADE 143

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           K A++ +Q L KG+ F  LA+E         +   LG F    +      ++ FSL K G
Sbjct: 144 KTAEDIYQRLMKGEDFAALAKEYSIDTATKDNGGDLGEFPHGVMV-PEFEEAAFSL-KLG 201

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +  +   +GY I     I       F EVK  I + +   K ++ +KE Y  L
Sbjct: 202 EISKPVKTQYGYHIIKSEGIT---VKPFDEVKGTIESYLLNDKKNKVIKEKYDEL 253


>gi|108803753|ref|YP_643690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764996|gb|ABG03878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 354

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/371 (15%), Positives = 121/371 (32%), Gaps = 92/371 (24%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG-FVVNSERARSVGLDKKILDNLVSG 96
           SG+  V      +V         +++L ++ ++ G   +  +  +      +I+  LV+ 
Sbjct: 47  SGAQKVAVFEGGEVTQGQ----VQEQLDLLGRQSGLGEITPDSPQYQSAIAQIMPQLVTQ 102

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSP-------LFHGKDNKFSHDVFVSRLAREGINEK 149
                +  + G+      V  EI R            G+D     + F   L + GI E 
Sbjct: 103 EIAQAYAREHGITVTEREVEREIGRIKDQLVRQARAQGQDIG-REEAFRRALEQAGITEA 161

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
           +  +   + L    V     G                                   A P+
Sbjct: 162 QLREQIREQLPVQKVQERVAG----------------------------------DARPT 187

Query: 210 NAVLTQWFEKYKD-NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
              +  ++E+ ++  +  P  + + +ILF+  +                           
Sbjct: 188 EEEVRDYYEENREAQFTTPAQRCVRHILFNPDQ--------------------------- 220

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVS 324
                      ++ A+E  + L++G  F +LA E  +          LG   +      +
Sbjct: 221 -----------RERAEEVKRRLEEGADFAELAREYSQDPGSREKGGDLGCIGRGETV-PN 268

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             ++ F  A++G+    +   FGY +  V +++   T    EV+  I  Q+  T  +EK 
Sbjct: 269 FEEAAFG-AEEGEVVGPVKTQFGYHVIKVYDVRRESTEPLSEVEDRIREQLAATAQAEKF 327

Query: 385 KEDYKRLEEFL 395
           +   +R EE  
Sbjct: 328 QRWVERQEELR 338


>gi|118443543|ref|YP_877117.1| peptidylprolyl isomerase [Clostridium novyi NT]
 gi|118133999|gb|ABK61043.1| parvulin-like peptidyl-prolyl isomerase [Clostridium novyi NT]
          Length = 348

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/408 (13%), Positives = 130/408 (31%), Gaps = 88/408 (21%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++ IRK     VA + + V  +  +   + +        + V  VG +K+      +++ 
Sbjct: 1   MKNIRK----LVATVAVCVFSMSAVGCSMIEKTPEAINKTVVAKVGDKKITKGELDSNF- 55

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKI-------LDNLVSGATLDQFIEDIGLEADHGR 114
             +    ++       + A +  + +++       +  + +   L Q  E +GL      
Sbjct: 56  -AVKRYEEQFKAQYGDKYAENPQVKEQLKQVKVATVQQMAAQEALKQEAEKLGLVPKEAE 114

Query: 115 VWGEI-ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
           +  E   +      + N  S++ F   L   G  ++ +       +    +         
Sbjct: 115 LKKETDKKIQEMKKEQNIKSNEEFEKMLKASGFTKEGFESLVRDNIILEKLQN------- 167

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----RAPEY 229
                                       +          + +++E +KD Y    + P  
Sbjct: 168 ---------------------------ELTKNVKVDEKEMQKYYETHKDKYPKDVKNPTK 200

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
             +++I+     +E                                +   + E     + 
Sbjct: 201 VHLAHIILQPKSQED-------------------------------LAKCESEIKSIKEE 229

Query: 290 LKKGKKFIQLAEEQGKSLS---DISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           L KG +F  LA++  +  S      LG+    +   D    ++   L K G  +  +   
Sbjct: 230 LNKGAEFSVLAKKYSQDGSKEKGGDLGTVPTVDSGFDEQFMEAALPL-KDGQISEPVKTQ 288

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           FGY I  +   +     +F EVK +I   +   K  + +K+ +K++++
Sbjct: 289 FGYHIIKMIKKEVKPCKTFAEVKNEINKFLLEEKKGKIIKDKFKQIQD 336


>gi|295132519|ref|YP_003583195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zunongwangia
           profunda SM-A87]
 gi|294980534|gb|ADF50999.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase
           [Zunongwangia profunda SM-A87]
          Length = 702

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 80/649 (12%), Positives = 214/649 (32%), Gaps = 77/649 (11%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L  IR+  R+    + + +    F++  +  +       +++ +V  +++    F     
Sbjct: 4   LNKIRQ--RSVFLILIIALALFSFVLADVIRSGGFSGKDNSIATVNGEEISREEFA---- 57

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
           +++    Q +   +++ +A       ++ D  ++   +++ +E +G+ A+  +V   +  
Sbjct: 58  RQVEAYQQNMRGNISTTQAV-----NRVWDQELNQIIVEEQVEKLGIRAEQAQVRQMMRA 112

Query: 121 ---RSPLFHGKDNKFSHDVFVSRLAREGINEKE-------YIDHYTKMLSRTDVVGMFVG 170
              ++P F  +   F  +     +A       +       Y +   +  ++     M   
Sbjct: 113 QMSQNPQFTNEAGMFDENRVKEYVASLKQTSPQMYQQWLSYEEGLAESAAQNIYANMIRT 172

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEY 229
           G+  +     QA +       + Y+ +    +P    + S + + ++ + +K  +     
Sbjct: 173 GVGATLTEGKQAYQLQNNTMDLRYVQIPFSSIPDDEVEVSKSEIKEYVDNHKAKFETEAA 232

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           + I Y++F+     +  E S + L A  E   E              + +  + ++    
Sbjct: 233 RNIQYVIFNEEPSVEDKEESKNSLSALLEDRVE--------------YNSVSKTNDTIAG 278

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
                   +           ++     K  +P    AD +F+L +KG+       +  + 
Sbjct: 279 FNTTSDDQEFVNSNSDLQQPVTFKF--KNQLPK-EFADDLFNL-EKGEVYGPYEENGYWK 334

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQ---MRITKASE---KVKEDYKRLEEFLALGTSMDE 403
           ++ +   K        E+   I      +    A     + +   K+L + LA       
Sbjct: 335 LSKLVETK--------EIPDSIKASHILLGFQGAQAGGTRTESAAKQLADSLAGVIK--- 383

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
            + + K+ ++     +F+      +    + Y    +      D  L+ +        + 
Sbjct: 384 -ADKSKMAAL---ATEFSDDPSAAQNSGDLGYFRPGMMVPTFDDFVLNNNEGTVGVVETD 439

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK-NFRDIGK 522
               +       DR+    +  V ++    +     +   N++       G+ +F +  K
Sbjct: 440 FGYHVIYIEEQTDREKAVKIATVAREIDATEGTR--NKLFNEVTKFEIAAGEGDFTEEAK 497

Query: 523 NLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
                + T   +  +D      G     +   F    ++      E    Y+V ++T  K
Sbjct: 498 AADYRIRTVRDVKALDENIPGVGQQRRVVQWAFEDDAKVGDVKRFETPTGYIVAQITAKK 557

Query: 581 ----VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
               + P     + I  LT+    +++   I+        TV      +
Sbjct: 558 NKGLMSPEDASAEVIPILTKQKKAEIIKEKIS------GTTVDQVAENQ 600



 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 94/267 (35%), Gaps = 37/267 (13%)

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-----LKKGK-KFIQLAEEQG----- 304
             E+  ++  + +I TV + +   +   ++ F       +  G+  F + A+        
Sbjct: 446 YIEEQTDREKAVKIATVAREIDATEGTRNKLFNEVTKFEIAAGEGDFTEEAKAADYRIRT 505

Query: 305 ----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
               K+L +   G   +  +   +  D      K GD         GY++A ++  K   
Sbjct: 506 VRDVKALDENIPGVGQQRRVVQWAFEDDA----KVGDVKR-FETPTGYIVAQITAKKNKG 560

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
            +S ++   ++   +   K +E +KE           GT++D+++  +  +      V+ 
Sbjct: 561 LMSPEDASAEVIPILTKQKKAEIIKEKI--------SGTTVDQVAENQNKIVQTANAVNL 612

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD---R 477
           +        +A    + +++  V+           +    G Y+   + +S        +
Sbjct: 613 SS-----PTLAGAGSEPEVVGAVYAL-GVGETSKPIVGDKGVYVVELVSKSEAPELDSYK 666

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKAN 504
              +  T  ++     +  E + +KA 
Sbjct: 667 PFAQQETSSRRQMANSRAFEALKAKAE 693



 Score = 44.6 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 10/140 (7%)

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP--- 321
            SPE  + E +    +++  E  +    G    Q+AE Q K +   +  + S   +    
Sbjct: 562 MSPEDASAEVIPILTKQKKAEIIKEKISGTTVDQVAENQNKIVQTANAVNLSSPTLAGAG 621

Query: 322 -DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT----VSFQEVKKDIANQMR 376
            +  +  ++++L   G+ +  I G  G  +  + +   +        F + +     QM 
Sbjct: 622 SEPEVVGAVYALG-VGETSKPIVGDKGVYVVELVSKSEAPELDSYKPFAQQETSSRRQMA 680

Query: 377 ITKASEKVKEDYKRLEEFLA 396
            ++A E +K   + +E+  A
Sbjct: 681 NSRAFEALKAKAE-IEDKRA 699


>gi|297374635|emb|CBL42922.1| PpiC-type peptidyl-prolyl cistrans isomerase [Candidatus
           Magnetobacterium bavaricum]
          Length = 323

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 106/256 (41%), Gaps = 26/256 (10%)

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           L +E I  ++  +   K+     +  MF G         D  KR   E +  + + L  +
Sbjct: 39  LGQETITSEQLQEELAKLPPN--IKAMFTGK--------DGLKRLVDEVKKREVLYLEAK 88

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
            V    DP        F K    ++      +   L   + + K + ++ +E +  Y++N
Sbjct: 89  KVGLDKDPE-------FTKKITEFK---KINLINTLIQKNVQAKNVTVTPEEAKKYYDEN 138

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFS 316
           ++++  PE      ++   ++EA + +  LKKG  F   A+    +   +     L  FS
Sbjct: 139 QKEFVMPEQVRAVHILVKTEQEAKDLYDKLKKGGDFAATAKSVSMDTATAEKGGDLDFFS 198

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           +  + + S  +++F L KKG+ +  +  SFGY I  V + K + T  F+ VK  I   + 
Sbjct: 199 RGQM-EPSFDEAVFKL-KKGELSTPVKTSFGYHIIKVVDNKEAKTTDFESVKPMIIQYLT 256

Query: 377 ITKASEKVKEDYKRLE 392
             K  +     Y  +E
Sbjct: 257 GEKQKKTFDTYYSSVE 272


>gi|194333180|ref|YP_002015040.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Prosthecochloris
           aestuarii DSM 271]
 gi|194310998|gb|ACF45393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Prosthecochloris
           aestuarii DSM 271]
          Length = 694

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 84/710 (11%), Positives = 212/710 (29%), Gaps = 115/710 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +  +R  +   +  +    L +    WG++ + F+  G      V    V + ++   + 
Sbjct: 1   MTKLRDKTHIVLYTLLAAFLALIVFEWGMNSSGFTGGG-VLAGKVNGTPVEYRNYEQVYD 59

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
             +    +       S+      L ++  + LV    L+  ++   +      V   +  
Sbjct: 60  SLVDNFRRTSPQEEISDEIER-ELRQRAWNLLVDQILLEDALQSFSIHVADAEVLAAVES 118

Query: 122 S-------PLFHGKD-NKFSHDVFVSRLAREGINEK------EYIDHYTKMLSRTDVVGM 167
                     F   +  +   D F        ++        +  +   + L    +  +
Sbjct: 119 DSPPMIIRQNFINPETGEIDRDRFEQ----ARMDPANSDIWLQIEEIIRRELMVQKLQRV 174

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA--DPSNAVLTQWFEKYKDNYR 225
               ++ ++  LD      F + S  ++ L        +    S+  L +++E  ++ +R
Sbjct: 175 LATTVKVTSEELDALYDRQFASYSATFLTLPFSAAGPDSLFAVSDKELNEYYESNRELFR 234

Query: 226 APEYKRISYILFDV--------------HEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
               + + Y+ F                     +   S+D+  +      ++  +   R 
Sbjct: 235 QEPTRSLDYVSFPALPTGRDSVAVRMELEGLAAEFAASDDD-SSFVSLQSDRGDTFNKRY 293

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLA----------EEQGKS-----LSDISLGSFS 316
                 P    A     SL  G     +A           + G        S I LG  +
Sbjct: 294 TRADFSPAAAAAVFDSASLSDGALIGPVADRNVYRLLKIRKSGTDGAVVRASHILLGFPA 353

Query: 317 KEYIPDVSLADSIFSL---AKKGDF-------------TPVIHGSFGYVIAHVSNIKPSF 360
            +        +   S+    K G               +    G  G+        K + 
Sbjct: 354 GDAAARNDAEERAASIMNELKNGKSFDLLAREFSDDPGSAPHGGDLGWF------AKGAM 407

Query: 361 TVSFQEVK---------KDIANQ-----MRITKASEKVKEDYKRLEEFLALGTSMDEI-- 404
              F++             +A Q     +++T    +  +  + +        +++ +  
Sbjct: 408 VPDFEKAAFGAAPGRVVGPVATQFGLHIIKVTGRDNRFIDCSEVVRSIRPSSNTLESVRR 467

Query: 405 -SRREKIVSIDLPL----------VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
            +   +I ++D             V   G   K   +  I +  Q+    F  D      
Sbjct: 468 TAAEFQIEAVDKGFQKALGASGLKVSSTGPFTKNGMIPGIGFNNQITRFAF--DASKGDV 525

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEE-VLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
             V   D  ++ +Q+ E   +  R L+E V   + +  +  K    + +    L    + 
Sbjct: 526 SDVVATDDGFVVLQVTERNDSGYRSLDETVRDQITRLLRDRKKGVALDAM---LSAGLAS 582

Query: 513 EGKNFRDIGKNL-GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571
             +N   + ++L G+ L+  + I R            + +  SG        P+E     
Sbjct: 583 SKQNLEALSRSLAGSKLVKASDIRRNAESAYD---PFLLEALSGMKPSSVSLPVETRSGR 639

Query: 572 VVFKVTN----SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +  + +      + P + + +    + +   + +++     L+ + ++ 
Sbjct: 640 ALIALESKSYPDGMDPDEARRRLRPLVERAKTEQVIEDYFNALRREATIE 689


>gi|326390841|ref|ZP_08212393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993100|gb|EGD51540.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 301

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/385 (12%), Positives = 111/385 (28%), Gaps = 113/385 (29%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +  + F ++ +   +   +    V +V  + +  + +  ++ Q    I     +  +   
Sbjct: 5   IALLLFFVFIVFLTVSCSTKKDVVATVNGENITNAEYKKAFDQVKAQIESSPQYTKDIWD 64

Query: 80  ARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
               G      + + +LD+L++   L Q      +      +  E  +    +    K  
Sbjct: 65  QDYQGKKFLDVVKENVLDSLIAQKLLVQEALKNNITVTDKEIADEYQKEKEVNKDITKED 124

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
              +                     L    +   +   ++                    
Sbjct: 125 VKNY---------------------LLINKLFDEYTKDVKV------------------- 144

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
                          +   L +++E  K+ +                             
Sbjct: 145 ---------------TEEELKKYYEDNKEQF----------------------------- 160

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----D 309
                         E+     ++  ++K A++ +  L KG+ F  LA+E     +     
Sbjct: 161 --------------EVVKASHILVADEKTAEDIYNRLMKGEDFATLAKEYSIDTATKDQG 206

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG F    +        +FSL KKG+ +  +   +GY I     +       F EVK 
Sbjct: 207 GDLGEFPHGVMV-SEFDQVVFSL-KKGEISKPVKTDYGYHIIKSEGV---AIKPFNEVKD 261

Query: 370 DIANQMRITKASEKVKEDYKRLEEF 394
            I + +   K ++ +KE Y  LE+ 
Sbjct: 262 AIESYLLNDKKNQVIKEKYDALEKA 286


>gi|253701697|ref|YP_003022886.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
 gi|251776547|gb|ACT19128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
          Length = 341

 Score =  133 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 120/357 (33%), Gaps = 78/357 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  +++  +    S K    +++ + G  +     +   L+K+ LD LV    +
Sbjct: 51  GEVVARVNGKEIHRNELERSKKI---LMAGQPG--IPPYLLKE--LEKQALDQLVGAELM 103

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q    +GL+         +A + L   K       V+   LA  G+ E+   ++  + L
Sbjct: 104 YQAG--LGLQIKD---LDRMADAKLVQIKSGFKDQQVYEKELANIGMTEQMLREYSRRDL 158

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
              ++V                                    + A    ++  + +++  
Sbjct: 159 VIANLVNT---------------------------------KLAADLQVTDLEIEKFYAD 185

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
             + +   E  R S+IL                          K  + E +         
Sbjct: 186 NPERFEQKEQVRASHILIGCD---------------------SKGTAEEKKKAR------ 218

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             +A+   + +K+G  F +LA E      + +   LG F +  +      ++ F+L K G
Sbjct: 219 -DKAERLLKEVKEGADFAKLARENSTCPSATNGGDLGYFPRGKMV-PPFEEAAFAL-KSG 275

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           + + V+   FG+ +   ++   +  VS    ++ I   ++  K  E V     R ++
Sbjct: 276 EVSDVVETGFGFHLVKQTDRIKAEKVSLATAREKIVAYLKSQKTGEVVASFIGRAKQ 332



 Score = 44.2 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 90/261 (34%), Gaps = 20/261 (7%)

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           +  ++      + V      L     LG  + ++ R      + +    F  + V  KE+
Sbjct: 85  LLKELEKQALDQLVGA---ELMYQAGLGLQIKDLDRMADAKLVQIKS-GFKDQQVYEKEL 140

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALP-DGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
           A I   EQ+L     +D  ++      L  D     ++I++       + E+    V+  
Sbjct: 141 ANIGMTEQMLREYSRRDLVIANLVNTKLAADLQVTDLEIEKFYADNPERFEQ-KEQVRAS 199

Query: 490 WK--------TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
                     T +  ++   KA +L+ E  KEG +F  + +        TN  +      
Sbjct: 200 HILIGCDSKGTAEEKKKARDKAERLLKE-VKEGADFAKLARENSTCPSATNGGDLGYFPR 258

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISYLTQM 597
                      F+     V    +E G  + + K T+     KV     ++K ++YL   
Sbjct: 259 GKMVPPFEEAAFALKSGEV-SDVVETGFGFHLVKQTDRIKAEKVSLATAREKIVAYLKSQ 317

Query: 598 MNKDLLDSVIAYLKSQYSVTV 618
              +++ S I   K    + +
Sbjct: 318 KTGEVVASFIGRAKQDAKIEL 338


>gi|187777480|ref|ZP_02993953.1| hypothetical protein CLOSPO_01048 [Clostridium sporogenes ATCC
           15579]
 gi|187774408|gb|EDU38210.1| hypothetical protein CLOSPO_01048 [Clostridium sporogenes ATCC
           15579]
          Length = 348

 Score =  133 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/396 (12%), Positives = 122/396 (30%), Gaps = 88/396 (22%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN--SWKQEL 64
           K ++  ++ + L +  + F    + +        ST+  V  +K+           KQ +
Sbjct: 14  KNAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLEENPRLKQVV 73

Query: 65  GMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
             +  + G            L ++   ILD L++   L Q  +++ +      +  E+  
Sbjct: 74  NQMKMQYGEEFEKSEQGKEVLKEQKSQILDELITEKVLLQKGKELKVIPKDEELNKEV-- 131

Query: 122 SPLFHGKDNKFSHD--VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
              F+     +++D   F   L   G  ++   ++    +    V+              
Sbjct: 132 DKKFNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKSQIIIEKVIN------------- 178

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                                         +    +++ + +  +               
Sbjct: 179 ---------------------EATKDVKVEDKDAKKYYNENQSMFT-------------- 203

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            EK   + +S                         ++   + EA +  + L   + F ++
Sbjct: 204 -EKPNTMNVS------------------------HILVKTEDEAKKVKKRLDSKEDFAKV 238

Query: 300 AEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           A+E  +       G         +   D +   +  +L K+G  +  +H  FGY I  ++
Sbjct: 239 AKEVSQDPGSKDKGGLLGDINYNDANFDPTFMKAAIAL-KQGAVSNAVHTQFGYHIIKIN 297

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           + K      +  VK+DI  ++++ K  E   +  + 
Sbjct: 298 SKKEYPVKKYDAVKEDIKKELKMEKQKEAYTKKIEE 333


>gi|289579378|ref|YP_003478005.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           italicus Ab9]
 gi|289529091|gb|ADD03443.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           italicus Ab9]
          Length = 301

 Score =  133 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 108/266 (40%), Gaps = 18/266 (6%)

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS---VDYI 195
           + +  E I   EY   + ++ ++ +    +   +   +    +      EN     +   
Sbjct: 29  ATVNGENITNAEYRKAFDQVKAQIESSPQYTKDIWNQDYEGKKFLDVVKENVLDSLIAQK 88

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKD---NYRAPEYKRISYILFDVHEKEKKIEISNDE 252
           +L    +      ++  + + +++ K+   +    E K    I     E  K ++++ +E
Sbjct: 89  LLLQEALKNNVTVTDKEIEEEYQREKEFNKDITKEEVKNYLLINKLFEEYTKDVKVTEEE 148

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---- 308
           L+  YE NK+++   E      ++  ++K A + +  L KG+ F  LA+E     +    
Sbjct: 149 LKKYYEDNKDRF---ETVKASHILVSDEKIAQDIYNRLMKGEDFSTLAKEYSIDTATKDQ 205

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
              LG F++  +         FSL KKG+ +  +   +GY I        +   SF EVK
Sbjct: 206 GGDLGEFARGVMV-PEFEQVAFSL-KKGEISKPVKTDYGYHIIKSEG---ATLKSFDEVK 260

Query: 369 KDIANQMRITKASEKVKEDYKRLEEF 394
            DI   +   K ++ + E Y  LE+ 
Sbjct: 261 GDIEAYLLNDKKNQVITEKYDALEKA 286


>gi|147676453|ref|YP_001210668.1| parvulin-like peptidyl-prolyl isomerase [Pelotomaculum
           thermopropionicum SI]
 gi|146272550|dbj|BAF58299.1| parvulin-like peptidyl-prolyl isomerase [Pelotomaculum
           thermopropionicum SI]
          Length = 324

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 65/395 (16%), Positives = 146/395 (36%), Gaps = 89/395 (22%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           + K++R ++A    +V+            + S   S  V +V  +K+         ++  
Sbjct: 1   MGKSTRQFIAAAVFLVIVA----------VLSGCSSRAVATVNGEKITAGELSQRLEEIK 50

Query: 65  GMISQKIGFVVNSERARSVG--LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
             + ++ GF  + ++ ++    L ++ L+ +++   + Q  + +G      +V   I   
Sbjct: 51  SNLEKQ-GFDFSGDKGKAFMESLRQETLEQMINTRLMLQEAKKLG-PLTPEQVQEIIKPL 108

Query: 123 PLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
                   +F S + +   LA+  ++E+E            ++     G + P       
Sbjct: 109 KE------QFSSAEEYQDFLAQIKMSEEEAAYIL-------NLQEQVTGDVAP------- 148

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                                     P+ A + ++++++ + +  PE  ++ +ILF V  
Sbjct: 149 --------------------------PAEADIKKYYDEHLEEFSRPEQLQVRHILFFVDG 182

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
            +K   +                        +      ++ A+EA   LK GK F +LA 
Sbjct: 183 GDKGYPV------------------------QHTDAEAREMAEEAIAQLKAGKDFAELAR 218

Query: 302 EQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           E+ +      D  L +FS++       AD+ ++L         +   +GY I  +    P
Sbjct: 219 EKSEDSGTRADGGLYTFSRDEAVK-EFADAAYALKVGEYTADPVKTEYGYHIIKLEKKIP 277

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           +    F+EV++DIA  +      EK  E  ++ ++
Sbjct: 278 ARQDPFEEVRQDIAGLLLEQARQEKFGEFMQQAKD 312


>gi|189423768|ref|YP_001950945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
 gi|189420027|gb|ACD94425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
          Length = 305

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 5/167 (2%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            KRI    +   + E + +IS+DEL+  YE+N +K+ + E      ++  +++EA    +
Sbjct: 110 KKRIIVDTYLKKKVEAESKISDDELKKFYEQNLDKFKAGEQIRASHILVKSEQEAQSILE 169

Query: 289 SLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            LKKG  F +LA+ +           LG F K  +   +   + F L K+G  + ++   
Sbjct: 170 QLKKGANFEELAKTKSADSSAAKGGDLGWFGKGNMV-PAFEKAAFGL-KEGQLSGIVKSD 227

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           FGY I  ++  + + T    EVK+ I   +   K  +   +  + L+
Sbjct: 228 FGYHIIKLTGKRAAGTRPLDEVKEQIKGAIMPQKQQQVFMKLKEDLK 274



 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 27/176 (15%)

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKE---------DYKRLEEFLALGTSMDEI 404
             ++    +S  E+KK     +   KA E+++          + + + E L  G + +E+
Sbjct: 121 KKVEAESKISDDELKKFYEQNLDKFKAGEQIRASHILVKSEQEAQSILEQLKKGANFEEL 180

Query: 405 SR--REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
           ++       +     + + GK                    FG  +       +   D  
Sbjct: 181 AKTKSADSSAAKGGDLGWFGKGN---------MVPAFEKAAFGLKEGQLSG--IVKSDFG 229

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
           Y  +++     A  R L+EV   +K      K  +        L     K+G    
Sbjct: 230 YHIIKLTGKRAAGTRPLDEVKEQIKGAIMPQKQQQVFMKLKEDL-----KKGAKIE 280



 Score = 38.4 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 9/75 (12%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
            +  + +V   K+    F    K     I            A +    K+++D LV    
Sbjct: 36  DAKVIATVNGAKITSEDFDREVKALPEYIRAM---------ADTPQGKKEMIDTLVMREL 86

Query: 99  LDQFIEDIGLEADHG 113
           + Q     G++    
Sbjct: 87  ILQQAAKDGVDKGKE 101


>gi|306820765|ref|ZP_07454390.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551155|gb|EFM39121.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 245

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 101/260 (38%), Gaps = 27/260 (10%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
           ++ +    I EK+  D+  K + +  +          S    ++ + +  +      ++ 
Sbjct: 6   LATIGDMNITEKDL-DYMKKNMDKRVL----------SQFSGERGEYYLLQELINQKLM- 53

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                      +N      FE  KDN+ +     I  +L         + +S++E++  +
Sbjct: 54  -AIDAKTSDLLNNDEFKFEFESMKDNFIS--QYVIKTVL-------DSVTVSDEEVREFF 103

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGS 314
           E NK  +   E  +   ++  +  +A+  ++ ++ G+ F  LA+E      S +   LG 
Sbjct: 104 ETNKNAFGESETVSASHILVGDLSKAESLYEKIQNGEDFATLAKENSTCPSSANGGDLGY 163

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
           F +  +      D  FSL + G  +  +   FGY +  +++ K     SF+++K ++   
Sbjct: 164 FGRGQMVK-EFEDMAFSL-EVGAVSKPVKTQFGYHLILLNDKKADKPKSFEDIKDELRES 221

Query: 375 MRITKASEKVKEDYKRLEEF 394
           +   K  E        L E 
Sbjct: 222 LFAKKQQEAYVAKINSLREK 241


>gi|189425796|ref|YP_001952973.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
 gi|189422055|gb|ACD96453.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
          Length = 335

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 123/358 (34%), Gaps = 78/358 (21%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
             V  V    +P +    +          K          +   + + +L+ ++ G  + 
Sbjct: 44  DPVARVNGVAIPAADLQKALN-----AFSKSPSAAQVPPGKEKEVQQFLLNQMLGGELMY 98

Query: 101 QFIEDIGLEADHGRVWGEIARSPL-FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           Q  +   ++    ++   + +    F        +D ++  L  +G++EK+  +   + +
Sbjct: 99  QVAKATPVKDLDKKIDDAVTKLKARFKT------NDEYLQGLKEQGLSEKDLRELIRRNV 152

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
              + +                                    +      ++A + ++++K
Sbjct: 153 IIENHIEQV---------------------------------IVPKQVVTDAEMKEFYDK 179

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
             + +  PE  R S+IL  +  K    +                                
Sbjct: 180 NPETFTQPEQVRASHILITLDAKATDAD----------------------------KKKA 211

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +++ ++  + +K G  F +LA+E     S      LG F K  +      ++ F++ K G
Sbjct: 212 KEKIEDLLKQVKAGADFAKLAQENSGCPSSKQGGDLGYFGKGQMVKP-FEETAFAM-KPG 269

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           D + V+   FGY I  ++  K +  V+F EVK  IA+ ++  K +E +    +  ++ 
Sbjct: 270 DVSGVVETQFGYHIIKLTEKKAAAKVAFDEVKAKIADSLKRKKVTEAINATLEDAKKK 327


>gi|253698852|ref|YP_003020041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
 gi|251773702|gb|ACT16283.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
          Length = 336

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 5/167 (2%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            KR+    +   + E+   IS+ +++A YEKNKEK+ S        ++  ++ EA +   
Sbjct: 128 KKRVIVEAYLKKKVEESANISDADMKAFYEKNKEKFQSGAQVRASHILVKSEAEAKDVQN 187

Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            LK G  F +LA++    G +     LG FSK  +         F L K+G+ + ++   
Sbjct: 188 QLKSGASFEELAKKHSIDGAAQKGGDLGWFSKGSMI-PDFEKVAFGL-KEGETSGIVKTQ 245

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           FGY I   +  +P+   SF++VK  I   M   +  E  K     L+
Sbjct: 246 FGYHIIKKTGDRPAGARSFEDVKDQIKAAMVPERQQETFKNLKDELK 292



 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
            Q+R +    K + + K ++  L  G S +E++++  I           G      + + 
Sbjct: 167 AQVRASHILVKSEAEAKDVQNQLKSGASFEELAKKHSIDG----AAQKGGDLGWFSKGSM 222

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
           IP  E++ F +        +   +      Y  ++     PA  R  E+V   +K     
Sbjct: 223 IPDFEKVAFGL-----KEGETSGIVKTQFGYHIIKKTGDRPAGARSFEDVKDQIKAAMVP 277

Query: 493 VKTAEEVSSKANQL 506
            +  E   +  ++L
Sbjct: 278 ERQQETFKNLKDEL 291


>gi|145220375|ref|YP_001131084.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206539|gb|ABP37582.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 704

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 97/720 (13%), Positives = 211/720 (29%), Gaps = 127/720 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLI-----WGLSDALFSVSGSSTVV--SVGRQKVPFS 54
           +  +R  +      I L +L   FL      WG+  A F   G       SV    + +S
Sbjct: 4   MSNLRDKTH-----IILYILLASFLGLIVFEWGMDFAGFGGRGGRGQNAGSVNGVSISYS 58

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +   ++Q      +       S     + + ++  + +V    L+Q  +  G+    G 
Sbjct: 59  QYDQFYRQFSENYRRSNPGADMSPEIE-LRIQEQAWNTVVDQMLLEQQFQKFGITVQDGE 117

Query: 115 VWGEIARSPLFHGKDN--------KFSHDVFVSRLAREGINEK--EYIDHYTKM------ 158
           +   I R                 +       +       +E   +  +   +       
Sbjct: 118 ILAAINRPDPPQVIAGNFTDPATAQIDRQKLDAARRDPQNSEMWVQVEEIIRRELKIDKL 177

Query: 159 -----------------LSRTDVVGMFVGGMRPSNLLL----------DQAKRFYFENRS 191
                            L R     M    +                 D+ KR+Y E+R 
Sbjct: 178 IRALRTMEHVTDLELETLVRQQYTRMAASFIPVPFSFAGDDSKYPVKEDEIKRYYGEHRE 237

Query: 192 V---------DYIVLNNRHVPAIADPSNAV---LTQWFEK--YKDNYRAPEYKRISYILF 237
           +         DY+          +  +      +   F       ++   +  R S I  
Sbjct: 238 LFAEAPSRSSDYVFFPLTPSAQDSLAAQQEFASIRAGFATTRNDTDFVRMQSDRSSSINE 297

Query: 238 DVHEKEKKIEISNDELQA-----------------EYEKNKEKYFSPEIR---TVEQLVF 277
            +        ++   L                    Y   K K  +   +       ++ 
Sbjct: 298 TLDR-SDFSPVAGAALFGSSSLRAGSIIGPIADSGTYRLLKIKSVTTARKPVARASHILI 356

Query: 278 -----------PNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPD 322
                        +  +D   + LK G  F +LA     + G +     LG F  + +  
Sbjct: 357 RFNPNSRADIQKGRALSDMILRELKAGGNFAELARRYSADPGSAARGGDLGWFRSDRMV- 415

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
              AD++F+ +K G     +   FG  I  V+            V  +I   +R +  + 
Sbjct: 416 PEFADAVFA-SKPGAIVGPVQTQFGLHIIKVAGFDRKAV-----VASEIVRTIRPSSETA 469

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
           +       + +  A    MDE +  +K+       ++  G+  +   +AAI Y +++   
Sbjct: 470 EGIRRRAMVFQMDAKEKGMDESASADKL------PLETTGQFGRHMPIAAIGYNDKIDDF 523

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKTAEEVSS 501
            F   +    D  +  P G Y+ +++     +  RKL +++   +  +    K  E + +
Sbjct: 524 AFRSSEGDLSD-VIETPKGFYV-MRLTGKNDSGYRKLDDDLKAGITTEIIKEKKGEFIKN 581

Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
           +   L                +      +  + +             +  +   P+  + 
Sbjct: 582 RLASLAASPGATLAAIAAADSSFSMFSASDIRWSDGFIPGYGVDRPLVEAMAGMPLARL- 640

Query: 562 CFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             P++    Y V +V++  +        EK      +  +  + L  +  + L+ Q  + 
Sbjct: 641 SEPVQIQSGYAVCEVSSRALPEGLDIKTEKAGIAPQVLGLKQEQLFSAYFSALRKQAKIE 700


>gi|189345807|ref|YP_001942336.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium limicola
           DSM 245]
 gi|189339954|gb|ACD89357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium limicola
           DSM 245]
          Length = 701

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 86/691 (12%), Positives = 207/691 (29%), Gaps = 124/691 (17%)

Query: 28  WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
           WG++ + FS    S    V  ++VP++ +   +K+      +      +      +GL +
Sbjct: 30  WGMNFSGFSGKKGSAAGKVNGKEVPYARYEEIYKEFSENFRRSNPGA-DMSPETELGLQE 88

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS-------PLFHGK-DNKFSHDVFVS 139
           +  + LV    L++  E  G+      +   +            F              +
Sbjct: 89  QAWNVLVDQTLLEEQFEKYGISVQDSEIVASLDGDNPPMVIRQNFVDPATGTIDRASLDA 148

Query: 140 R---LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF--------- 187
               L  + +   +  D   + L  + ++      +  S+  LD   +  +         
Sbjct: 149 ARRDLKNKDM-WLQIEDIVRRELKVSKLIRALQTMVHVSDRELDAVVKREYTRFSASFIS 207

Query: 188 ---------------------------------ENRSVDYIVLNNRHVPAIADPSNAVLT 214
                                             +R  DY+          +      L 
Sbjct: 208 VPLGFAGPDSKFPVKADEIQKYYDSHKELLKQPASRKADYVFFPLVPSAKDSSVVRTELE 267

Query: 215 QWFEK-----YKDNYR-----APEYKRISYILFDVHEKEKKIEISNDELQ---------- 254
               +        +Y       P    + Y   D       +  ++   +          
Sbjct: 268 ALRTEFGTTKNDSDYVKVQSDRPSGVNVQYSRADFSPAAGAVVFNSANAKPGSIIGPVAD 327

Query: 255 -AEYE--KNKEKYFSPEIRTVEQLVF-----------PNQKEADEAFQSLKKGKKFIQLA 300
              Y   K  +      +     ++              ++   E ++ L+ G+ F  LA
Sbjct: 328 NGYYRLLKVSKVVTGEPVARASHILLQFNPASREDVAKVRERMVEIYRKLQSGESFEALA 387

Query: 301 EEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           ++     G ++    +G F ++ +     A+++FS ++ G  T  +   FG  I  V+  
Sbjct: 388 KQYSQDSGSAVKGGDIGWFGRKSVV-PEFAEAVFS-SRPGALTRPVQTKFGLHIIKVTG- 444

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR---EKIVSI 413
                  F +      N +  ++    ++   + +E    L T+    ++    +K    
Sbjct: 445 -------FDQ------NNLVCSEVVRLIRPSTETVESARRLATAFQMQAKDQGFDKSAIS 491

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
           +   V   G+  K   +AA+ + +++    F   +       +    G Y+ +++     
Sbjct: 492 EKLPVAKTGEFGKHTPIAAVGFNDKINAFAFKAAEG-DLSEVIETEKGFYV-MRLTGKND 549

Query: 474 ARDRKL-EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK-NLGASLLTT 531
              R L +++   +  +    K    +  +   L     K G     I   N   S++  
Sbjct: 550 TGYRLLDDDLKKRITAELVREKKEAALEKQLASLSA---KPGATLETIAAGNKAFSIVKA 606

Query: 532 NQINRMDNENKFFGYD-GISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQE 586
           + I   D     +G D  + +  SG    +   P++    Y + ++        V   + 
Sbjct: 607 DDIRWTDGYIPGYGIDRPLVEAISGMKSGLLSRPVKTTGGYALVRLDKRVLAGGVDMKEA 666

Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           K   +  L +   +       A ++   ++ 
Sbjct: 667 KAGILPNLLRAKQEQFFAEYFASVRKSAAIE 697


>gi|325281113|ref|YP_004253655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter
           splanchnicus DSM 20712]
 gi|324312922|gb|ADY33475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter
           splanchnicus DSM 20712]
          Length = 708

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 98/698 (14%), Positives = 234/698 (33%), Gaps = 118/698 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG-----SSTVVSVGRQKVPFSSF 56
           L+ IR      +  I + +  + F+   + DAL S S       + +  +  + V    F
Sbjct: 4   LQTIRNR-GGLLVSIVIGLALIAFI---VGDALNSGSRIFNSQRNQIGEIAGEGVSIIDF 59

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            N   +   MI         +E  +++ L +     ++    + +  ++IG++     ++
Sbjct: 60  QNRVSKNEEMIKAMNNVSSLNEEQQTM-LRENTWQQMIMEQLMQREYDEIGIDVSGDELY 118

Query: 117 GEIARS-------PLFHGKD-NKFSHDVFVSRLAR-----EGINEKEYIDHYTKMLS--- 160
             +           LF   +  +  +      + +       I +K Y  +  K +S   
Sbjct: 119 DALLGENMSPALRQLFTNPNTGEIDYAGARDYVKKVISAPNNIPQKAYWLNMEKEVSDSR 178

Query: 161 -RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFE 218
                  +    +  ++    +A     +   + YIV N   +     + SN  + +++ 
Sbjct: 179 KMAKYNAIVAKALYITDAQAQEAAANSADKADISYIVKNYSTIEDSTINVSNGEIKEYYN 238

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISN---DELQAEYEK---------------- 259
           K++ ++  PE ++I Y+ FD+    +    +    ++L  E+E+                
Sbjct: 239 KHQKSFEQPESRKIVYVNFDIEPSGEDFSETEGAVNDLVKEFEESADPLEFVNLSSDKKA 298

Query: 260 NKEKYFSPEI--RTVEQLVFPNQKE----------------------------------- 282
           ++  +   EI   ++ Q +F N+K                                    
Sbjct: 299 DRNYFKQDEIANDSMAQFLFNNEKAVFGPYLENNAYKISRVASVKMLPDSVRARHILIAP 358

Query: 283 -----------ADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLAD 327
                      AD     L+KG  F +LA+    +Q  +++   LG F+   +     +D
Sbjct: 359 QNQDYAQAKNIADSLAGLLRKGADFEELAKTNSVDQNSAVNGGDLGWFTSRTMVQP-FSD 417

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           S F   K      V+   +G  +  V+++ KP   +    V+K+++   + T       +
Sbjct: 418 SAFFAKKND--IKVVLTQYGAHVLQVTDMAKPVKKIQIATVEKEVSPSAKTT------NQ 469

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSID--LPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
            Y     F    +++D  +++ +   +   +  +    K + G E A    ++  +    
Sbjct: 470 IYNDARTFAIEVSNLDNFNKKVEESGLTKRIATIGKNDKTIAGMESAREMIRQAYMAEEV 529

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
            +    +   T+      +    + E        L +V  ++K+     K A+ +  +  
Sbjct: 530 DEVLKTNDGSTIFENGNKFTIAVLTEIDEEGIAPLNKVAGNIKRILIQKKKADLLKKE-- 587

Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG-ISQVFSGPVEMVKCF 563
             +       ++   I +  G  +   N+I+    +    G +  +    S   +     
Sbjct: 588 --LASAKSGSESLLSIARKAGLEVKEANEISFNSFQIPGAGIEPKVIAASSITEQGKISE 645

Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601
           PI       +  V N      +     ++   Q + + 
Sbjct: 646 PIAGNQGVYLILVNNRTT--EEVTPDMVAQGKQALQQS 681


>gi|322652566|gb|EFY48920.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
          Length = 141

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61  KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             E   + Q++G     + +       L +++L+ L+  A LDQ+  ++ L     +V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSR 140
            I  +P F   D KF ++ + + 
Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAI 141


>gi|197116615|ref|YP_002137042.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type
           [Geobacter bemidjiensis Bem]
 gi|197085975|gb|ACH37246.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type
           [Geobacter bemidjiensis Bem]
          Length = 324

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 5/167 (2%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            KR+    F   + E+   IS+ +++A YEKNKEK+ S        ++  ++ EA +   
Sbjct: 109 KKRVIVEAFLKKKVEESGNISDADMKAFYEKNKEKFQSGAQIRASHILVKSEAEAKDIQN 168

Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            LKKG  F +LA++    G +     LG FSK  +         F L K+G+ + ++   
Sbjct: 169 QLKKGASFEELAKKHSIDGAAQKGGDLGWFSKGSMI-PDFEKVAFGL-KEGETSGIVKTQ 226

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           FGY I   +  +P+   SF++VK  I   M   +  E  K+    L+
Sbjct: 227 FGYHIIKKTGDRPAGARSFEDVKDQIKAAMVPERQQETFKKLKDELK 273



 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
            Q+R +    K + + K ++  L  G S +E++++  I           G      + + 
Sbjct: 148 AQIRASHILVKSEAEAKDIQNQLKKGASFEELAKKHSIDG----AAQKGGDLGWFSKGSM 203

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
           IP  E++ F +        +   +      Y  ++     PA  R  E+V   +K     
Sbjct: 204 IPDFEKVAFGL-----KEGETSGIVKTQFGYHIIKKTGDRPAGARSFEDVKDQIKAAMVP 258

Query: 493 VKTAEEVSSKANQL 506
            +  E      ++L
Sbjct: 259 ERQQETFKKLKDEL 272


>gi|297564584|ref|YP_003683556.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
           DSM 9946]
 gi|296849033|gb|ADH62048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
           DSM 9946]
          Length = 632

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 107/662 (16%), Positives = 208/662 (31%), Gaps = 147/662 (22%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
            ++A  FLV   + F + G  +   + S   TV+ V  + V         + EL  I  +
Sbjct: 14  GFLALAFLVGATILFALQGGGNLSGNRSQGPTVMWVNGRPVS--------ELELARIQSR 65

Query: 71  IGFVVNSER-ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
              + ++ +      LD   L+ ++    + Q      +    G V   +        + 
Sbjct: 66  DPLLSSNPQGLMKPLLDTFFLEQVILTKAVQQDSSR--IRVSGGEVRKALDD---LKQRA 120

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
              + + +   L + G  + +  D     L     V                        
Sbjct: 121 GATTKEQYDQLLNQIGYTDSQLRDELRDSLKVQKRV------------------------ 156

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
                       +   A P+   +  +F+  K NY+  +  +                  
Sbjct: 157 ----------EEIQKKATPTPEEVKFYFDLNKANYKTEDRVK------------------ 188

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
                                   Q+V  ++K AD+ +  LK G  F++LA++  K  +D
Sbjct: 189 ----------------------ARQIVVDDKKLADDLYAQLKAGADFVELAKKNSKVAAD 226

Query: 310 --ISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
              +LG+ + +  P           +AD++F L K+G  T  I     Y I  V   KP 
Sbjct: 227 QGGALGAETGKSEPGFVTRVIFPSEVADAVFKL-KQGGLTAPIASGGRYYIVKVEEFKPG 285

Query: 360 FTVSFQEVKKDIANQMRITKASEKVK----EDYKRLEEFLALGTSMD---EISRREKIVS 412
              +F+EVK  +A  ++  K  + ++    E  K+ +   A  T+      +  +     
Sbjct: 286 GDPNFEEVKDRVAEDVKKIKGDQALEAYLLELRKKTQVRFAENTTYKYENPVVAKVGESE 345

Query: 413 IDLPLVDFAGKDVKGKE---------VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
           I LP +       +            +A   +  Q L ++  ++  +S+   +  P    
Sbjct: 346 IKLPELTQLVFTNQQIPQLIQQGLGDLAVQFFMPQALEQLITREILVSEAKKINQPFVGA 405

Query: 464 MWVQIKESIPARDRKL----EEVLT-----------DVKKDWKTVKTAEEVSSKANQLVL 508
                +E      + +    EEV                 + K +   +E  +KA     
Sbjct: 406 RDQIAREVQAYHTKDITVTDEEVRKYYAENPASFTIPASAEVKGISFKKEDEAKAKAFRE 465

Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-------SGPVEMVK 561
              K GK   D+ K  G ++    ++N                VF        GP+  V 
Sbjct: 466 AALKGGK-LEDLAKANGGTVTDYGKVN-----PGTLPPVANRLVFLTKGNFPKGPLGEVS 519

Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAYLKSQYSVT 617
                +  SY V  V N     ++  ++      + +          + +A L+ Q  V 
Sbjct: 520 EVVKLDDGSYQVLIVNNRVAEKLKPFEEVADQAREQVLAQKRSKAAQAWVAELRKQTKVE 579

Query: 618 VH 619
            +
Sbjct: 580 NN 581



 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 81/205 (39%), Gaps = 16/205 (7%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKKFIQLAE 301
           K I ++++E++  Y +N   +  P    V+ + F   ++ +A    ++  KG K   LA+
Sbjct: 419 KDITVTDEEVRKYYAENPASFTIPASAEVKGISFKKEDEAKAKAFREAALKGGKLEDLAK 478

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK-------GDFTPVIHGSFG-YVIAHV 353
             G +++D   G  +   +P   +A+ +  L K        G+ + V+    G Y +  V
Sbjct: 479 ANGGTVTD--YGKVNPGTLP--PVANRLVFLTKGNFPKGPLGEVSEVVKLDDGSYQVLIV 534

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           +N        F+EV      Q+   K S+  +     L +   +  +++++    +I   
Sbjct: 535 NNRVAEKLKPFEEVADQAREQVLAQKRSKAAQAWVAELRKQTKVENNLNKV--LAEITPK 592

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQ 438
           +           +     + P  + 
Sbjct: 593 ETKPASSNPGSGQQTPAQSSPQNKA 617


>gi|194337592|ref|YP_002019386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310069|gb|ACF44769.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 705

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 93/715 (13%), Positives = 198/715 (27%), Gaps = 126/715 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +  +R  +   +  +    L +    WG+     S +  +    V  + +P+S +   +K
Sbjct: 4   MSSLRDKTHIILYTLLAAFLALIVFEWGMDFTGNSGTKQNQAGEVNGKVIPYSQYEEIYK 63

Query: 62  QELGMISQKI-GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                  +   G  V  E    +   ++  + +V    LDQ ++  G+      V   + 
Sbjct: 64  AVTENFRRSNPGAEVMPE--NELEFQEQAWNTVVEQTLLDQQLKKFGITVQDQEVVDALG 121

Query: 121 RS--------PLFHGK-DNKFSHDVFVSRLAREGINEK--EYIDHYTKMLSRTDVVGMFV 169
            +          F              S        E   +      + L    ++    
Sbjct: 122 SATNPPQVIRQNFTNPATGAVDRAKLESIRRDPRNKELWLQIEKIVRRELEVNKLLRALQ 181

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--PSNAV-----------LTQW 216
             +  ++  LD      +   S  +I          ++                  L Q+
Sbjct: 182 TFVHVTDRELDDIVNRQYSLFSASFIPFPLSFAGPDSNFPVKEEEIKKYYDEHKELLKQF 241

Query: 217 FEKYKDNYR----------------------------------------APEYKRISYIL 236
           +   K ++                                          P      Y  
Sbjct: 242 Y-SRKADFVFFPLIPSSKDSLAVRTELETIRAEFSASVNDSDYVKVQSDRPAGINKVYSR 300

Query: 237 FDVHEKEKKI--------------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
            D       +               I++       +  +    +P +     ++      
Sbjct: 301 ADFSPAAGDVFFNSPNFKPGTIVGPIADRGEYRLIKIRQISASAPLVARASHILLHFNPA 360

Query: 283 ADE-----------AFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLAD 327
           + E            F+ L+ G  F  LA++        L+   +G FSKE +     A 
Sbjct: 361 SREDVARVSQLSALIFKQLQAGTPFDALAKKYSADPVSALNGGDIGWFSKERMV-PQFAA 419

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           ++F  A+ G     +   FG  I  V+         F       +  +R  + S +  + 
Sbjct: 420 AVFG-ARPGSVIGPVQTQFGLHIIKVTG--------FDTQAALCSEIVRNIRPSTETVDS 470

Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
            +RL     +  +     +      +    +   G   K   +  I Y+E +    F   
Sbjct: 471 GRRLATAFQINATEKGFDKSAASAKL---PIGKTGDFNKHMPIPQIGYREAVTTFAFKAK 527

Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLE-EVLTDVKKDWKTVKTAEEVSSKANQL 506
           +    D  +    G Y+ +++        R L+ E+   +  +    K    +  K   +
Sbjct: 528 EGDLSD-VLETEKGFYV-MRLTGKNDTGYRLLDKELKARITAELVRKKKEALLEKKLAAM 585

Query: 507 VLEYSKEGKNFRDIGKN-LGASLLTTNQINRMDNENKFFGYD-----GISQVFSGPVEMV 560
                  G     I  +  G  ++  + I   +     +G D     G+S +   P ++ 
Sbjct: 586 AA---VPGVTLEKIAASHAGVKVVVADSIRWSNGAIPGYGVDRSLVEGMSAL--VPGKLS 640

Query: 561 KCFPIENGLSYVVFKVTNSKVGPV--QEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
                 +G + V+        G     EK      L +   + L    IA L+ +
Sbjct: 641 APLKTSDGAALVLLSSKTVPAGLNRKAEKSAIAPQLLRAKQEQLFAEYIASLRKK 695


>gi|256751661|ref|ZP_05492536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749470|gb|EEU62499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 301

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 15/210 (7%)

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD---VHEKEKKIEI 248
           +   +L    +      ++  +   ++K K+  +    + +   L       E  K +++
Sbjct: 85  IAEKLLVQEALKNNITVTDKEIEDEYQKQKEVSKDITKEDVKNYLLINKLFDEYTKDVKV 144

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           + +EL+  YE NKE++   E      ++  ++K A++ +  L KG+ F  LA+E     +
Sbjct: 145 TEEELKKYYEDNKEQF---ETVKASHILVVDEKTAEDIYNRLMKGEDFATLAKEYSVDTA 201

Query: 309 ----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F    +        +FSL KKG+ +  +   +GY I     +       F
Sbjct: 202 TKDQGGDLGEFPHGVMV-PEFDQVVFSL-KKGEISKPVKTDYGYHIIKSDGVI---IKPF 256

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            EVK  I + +   K ++ + E Y  LE+ 
Sbjct: 257 DEVKDTIESYLLDDKKNQVIIEKYDALEKA 286



 Score = 37.7 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 93/289 (32%), Gaps = 37/289 (12%)

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           DV        I+N E +  +++ K +  S    T             + +    +GKKF+
Sbjct: 26  DVVAVVNGENITNAEYKKVFDQVKAQIESSPQYT------------KDIWDEDYQGKKFL 73

Query: 298 QLAEEQGKSLSDISLGSFSKE-----YIPDVSLADSIFSLAKKGDFTP--VIHGSFGYVI 350
            + +E              +       + D  + D      K+ + +          Y++
Sbjct: 74  DVVKENVLDSLIAEKLLVQEALKNNITVTDKEIEDEY---QKQKEVSKDITKEDVKNYLL 130

Query: 351 AH--VSNIKPSFTVSFQEVK---KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
            +           V+ +E+K   +D   Q    KAS  +  D K  E+        ++ +
Sbjct: 131 INKLFDEYTKDVKVTEEELKKYYEDNKEQFETVKASHILVVDEKTAEDIYNRLMKGEDFA 190

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
              K  S+D    D  G   +      +P  +Q++F +        +       D  Y  
Sbjct: 191 TLAKEYSVDTATKDQGGDLGEFPHGVMVPEFDQVVFSL-----KKGEISKPVKTDYGYHI 245

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK--ANQLVLEYSK 512
           ++    I    +  +EV   ++      K  + +  K  A +   +  K
Sbjct: 246 IKSDGVI---IKPFDEVKDTIESYLLDDKKNQVIIEKYDALEKAAKIQK 291


>gi|297545519|ref|YP_003677821.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296843294|gb|ADH61810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 301

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 15/210 (7%)

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE---KKIEI 248
           +   +L    +      S+  + + +++ K+  +    + +   L      E   K ++I
Sbjct: 85  IAQKLLLQEALKNNITVSDKEIEEEYQREKEFNKDITKEDVKNYLLINKLFEEYTKDVKI 144

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           + +EL+  YE NK+++   E      ++  ++K A + +  L KG+ F  LA+E     +
Sbjct: 145 TEEELKKYYEDNKDQF---ETVKASHILVSDEKIAQDIYNRLMKGEDFATLAKEYSIDTA 201

Query: 309 ----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F++  +         FSL KKG  +  +   +GY I        +   SF
Sbjct: 202 TKDQGGDLGEFARGVMV-PEFEQVAFSL-KKGQISKPVKTDYGYHIIKSEG---ATLKSF 256

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            EVK DI   +   K ++ + E Y  LE+ 
Sbjct: 257 DEVKGDIEAYLLNDKKNQVITEKYDALEKA 286


>gi|171914553|ref|ZP_02930023.1| hypothetical protein VspiD_25280 [Verrucomicrobium spinosum DSM
           4136]
          Length = 518

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 125/349 (35%), Gaps = 35/349 (10%)

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS---HDVFVSRLAREGINEKEYIDH 154
            L + +E  G++A +        + P+F  KD  F     + F + +   G+ + +  D 
Sbjct: 109 VLREELEKNGVQATNEEAREAFRKLPIFQNKDGNFDGNVAEQFQNNIGALGLRDTDVFDV 168

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
               +    +  +  G    +N +  Q     F+      I          A P++  + 
Sbjct: 169 LRDWIGFKRLHEIVAGNAVLNNNVSKQLYASTFQTVKAASIPFITDDFKKDAKPTDEEIA 228

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           +++E+ K+ ++    + +SY+LF   + EK       + + E+      +          
Sbjct: 229 KYYEEKKEAFKTAPKRAVSYVLFAKPDVEKLNAEDTVKARNEFAARVNDFGV-------- 280

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331
                         ++  G K   +A+     L    L +          +  L   IF 
Sbjct: 281 -------------AAIAPGAKLEDVAKTAKVELKTEPLFTMEAPPEALKEEPGLVSEIFR 327

Query: 332 L-AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV----KE 386
           +  +    +  + G+ GY    V+  +        EVK+ +A Q+   KA E +     E
Sbjct: 328 IDPQNRPVSDPVEGAKGYYFFSVTQEEEPKQQELAEVKEKVAEQLTSQKAQELMTKAASE 387

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG---KDVKGKEVAA 432
             K+LEE +  G + DE ++   +    LP    +        G+E+AA
Sbjct: 388 ARKKLEESIKGGKTFDEAAKEANLTPQQLPEFSPSNPLMDRTNGREIAA 436



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 88/259 (33%), Gaps = 16/259 (6%)

Query: 367 VKKDIANQMRIT--KASEKVKEDYKRLE-EFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
            K D+         KA  +            +A G  ++++++  K+     PL      
Sbjct: 252 AKPDVEKLNAEDTVKARNEFAARVNDFGVAAIAPGAKLEDVAKTAKVELKTEPLFTMEA- 310

Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
                   A+  +  L+  +F  D               Y +  + +    + ++L EV 
Sbjct: 311 -----PPEALKEEPGLVSEIFRIDPQNRPVSDPVEGAKGYYFFSVTQEEEPKQQELAEVK 365

Query: 484 TDVKKDWKTVKTAE---EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
             V +   + K  E   + +S+A + + E  K GK F +  K    +     + +  +  
Sbjct: 366 EKVAEQLTSQKAQELMTKAASEARKKLEESIKGGKTFDEAAKEANLTPQQLPEFSPSNPL 425

Query: 541 -NKFFGYDGISQVFSGPVEM-VKCFPIENGL--SYVVFKVTNSKVGPVQEKDKFISYLTQ 596
            ++  G +  ++  + P     K  P ENG+   YV+ K    +      K      L  
Sbjct: 426 MDRTNGREIAAETRTTPAGHFTKPLPTENGVLLVYVISKELRKRDDGASTKANIEKSLDG 485

Query: 597 MMNKDLLDSVIAYLKSQYS 615
           MM  D+  +     + +  
Sbjct: 486 MMQGDIFRAWFQRRRDEGK 504


>gi|224024283|ref|ZP_03642649.1| hypothetical protein BACCOPRO_01006 [Bacteroides coprophilus DSM
           18228]
 gi|224017505|gb|EEF75517.1| hypothetical protein BACCOPRO_01006 [Bacteroides coprophilus DSM
           18228]
          Length = 711

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 97/722 (13%), Positives = 213/722 (29%), Gaps = 129/722 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F+       L    G   V  V  + +    +     
Sbjct: 4   LQTIR--SKGPLLVIVIGLALFAFIAGDAWKILQPHQGKQDVGEVNGETLSAQDYQKMVD 61

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
            EL  + +    + +    +   +  ++  + V+   +    E +GL      +   I  
Sbjct: 62  -ELSEVIKLTNGLNSLNEDQLSNVKDQVWQSYVNNKLIAAEAEKLGLTVTDAELQAIIDQ 120

Query: 120 ------ARSPLFHGKDNKFSHDVFVSRL-----AREGINEKEYIDHY------------- 155
                  ++P  + +   F  D+    L             +Y+++Y             
Sbjct: 121 GTHPMLMQTPFRNPQTGAFDKDMLKKFLVDYANLNNSQMPAQYVEYYQTLGNFWKFIEKS 180

Query: 156 -TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVL 213
             +         + +  +  + +  + A +   E   +    +    +       S+  +
Sbjct: 181 LRQSTLAEKYQNLIMRSLISNPVAAEDAFKGRTEQSDMLLAAVPYSSIADSTVQVSDDEI 240

Query: 214 TQWFEKYKDNYRA-PEYKRISYILF-----DVHEKEKKIEISN----------------- 250
            + ++  K+ ++   E + I YI       D   +    E+++                 
Sbjct: 241 RKLYDTRKEQFKQLAETRNIRYIDVRVVPSDADRQAVLKEVTDYSNQLVNTSDDFATFVR 300

Query: 251 -------------------DELQA-------------EYEKNKEKY---------FSPEI 269
                               ++ A              Y +  + Y          +P+ 
Sbjct: 301 STGSVVNYADVPVNKTVLPQDVTARLDSVAINEVYGPYYNQADDSYNAFKIIAKTTAPDS 360

Query: 270 RTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIP 321
               Q+          +  AD  F +LK G  F +LA++ G++   + IS  S+    + 
Sbjct: 361 IQFRQIQVYANTEDATKTLADSIFTALKGGADFAELAQKYGQTGEANWISAASWEGAEL- 419

Query: 322 DVSLADSIFSLAKKGDFTPVIHG----SFG--YVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           D   A  I +L      +  ++     + G   VI  V N K         V      ++
Sbjct: 420 DAENAKYINAL-----ISQPVNELASLNLGQATVILQVMNKKAMKDKYKVAV-----VKL 469

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
            +  + E   + Y +  +F+A  T+++++ +  +     L        D     V  +  
Sbjct: 470 PVEFSKETYNDAYNKFSQFVAQNTTLEDLKKNAEESGYTLIPRTDFSSDEHY--VGGVHS 527

Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
             + L  VF               +   M V +++  P   R +  V   ++ + +  K 
Sbjct: 528 TREALKWVFAAKVGEVSPLYECGDNDHLMVVSVEKINPKGYRDINSVADMLRAEIRRDKK 587

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
           AE++ ++ N        +G            +      I          G      V   
Sbjct: 588 AEKIMAQMNGFNSLDQVKGMTDAVSDSVKHVTFSAPAYIAVTRASEPVIG-----AVAEK 642

Query: 556 PVEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
                   PI+      + +V    K           S LT M  +      I  L+++ 
Sbjct: 643 TAAGKLSAPIKGNAGVYMIQVYNKDKSAEEFNAKTEESNLTNMAAR-YASQCIYDLRTKA 701

Query: 615 SV 616
            V
Sbjct: 702 EV 703


>gi|301061946|ref|ZP_07202675.1| SurA N-terminal domain protein [delta proteobacterium NaphS2]
 gi|300443963|gb|EFK07999.1| SurA N-terminal domain protein [delta proteobacterium NaphS2]
          Length = 316

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 115/356 (32%), Gaps = 76/356 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S  V  V    +  ++   +         Q+ G  ++ E+     L K+ LD L+    L
Sbjct: 19  SEKVAVVNGDVITRANLDRAMDFAKRQSMQQ-GKPLDEEQL--AALKKETLDKLIGIELL 75

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKM 158
            Q  +  G + D  +V         F     +F + +     +    + E          
Sbjct: 76  YQASKKAGNKVDEKQV------DEKFAQFKKRFPNEEALQKTMEEWHVTE----ADMKAE 125

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L +  V   FV                              ++           +  +++
Sbjct: 126 LKKGMVTEAFV-----------------------------MKNFVDKTTIPEEEVKAYYD 156

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            +   ++ PE  + S+IL  V     + E +                             
Sbjct: 157 SHPQFFKQPEQVKASHILIKVKPDATEAEKAEAM-------------------------- 190

Query: 279 NQKEADEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
             K+ ++A   L +G+ F ++A+   E   +     LG F +  +      D  FSL + 
Sbjct: 191 --KKIEKAQDKLLEGEDFAEVAKTTSEGPSASKGGDLGYFGRGQMVKP-FEDVAFSL-EP 246

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G  + V+   FGY +  V + KP  T+  + VK  I   ++  +  +++K+    L
Sbjct: 247 GKVSDVVKTQFGYHLIKVVDKKPETTIPLETVKPRIEQFLKQQEVQKEIKKYIDNL 302



 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 102/344 (29%), Gaps = 68/344 (19%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
             V G   +   LD+A  F           L+   + A+   +   L             
Sbjct: 23  AVVNGDVITRANLDRAMDFAKRQSMQQGKPLDEEQLAALKKETLDKL------------- 69

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE--IRTVEQLVFPNQKEAD 284
                I   L     K+   ++   ++  ++ + K+++ + E   +T+E+       EAD
Sbjct: 70  -----IGIELLYQASKKAGNKVDEKQVDEKFAQFKKRFPNEEALQKTMEEWHVT---EAD 121

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
                LKKG        +              K  IP+  +    +  +    F      
Sbjct: 122 -MKAELKKGMVTEAFVMKN----------FVDKTTIPEEEV--KAYYDSHPQFFKQPEQV 168

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
              +++  V               +      +I KA +K+ E           G    E+
Sbjct: 169 KASHILIKV--------KPDATEAEKAEAMKKIEKAQDKLLE-----------GEDFAEV 209

Query: 405 SR--REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
           ++   E   +     + + G+    K    + +  +             K   V      
Sbjct: 210 AKTTSEGPSASKGGDLGYFGRGQMVKPFEDVAFSLE-----------PGKVSDVVKTQFG 258

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
           Y  +++ +  P     LE V   +++  K  +  +E+    + L
Sbjct: 259 YHLIKVVDKKPETTIPLETVKPRIEQFLKQQEVQKEIKKYIDNL 302



 Score = 38.0 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 18/156 (11%)

Query: 472 IPARDRK---LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK--NLGA 526
            P + +    L +V  D  +  K     +    KA   +LE    G++F ++ K  + G 
Sbjct: 164 QPEQVKASHILIKVKPDATEAEKAEAMKK--IEKAQDKLLE----GEDFAEVAKTTSEGP 217

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV----G 582
           S      +           ++ +   FS     V    ++    Y + KV + K      
Sbjct: 218 SASKGGDLGYFGRGQMVKPFEDV--AFSLEPGKV-SDVVKTQFGYHLIKVVDKKPETTIP 274

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
               K +   +L Q   +  +   I  L+    V +
Sbjct: 275 LETVKPRIEQFLKQQEVQKEIKKYIDNLRKGAKVEI 310


>gi|332798476|ref|YP_004459975.1| Foldase protein prsA [Tepidanaerobacter sp. Re1]
 gi|332696211|gb|AEE90668.1| Foldase protein prsA [Tepidanaerobacter sp. Re1]
          Length = 300

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 84/215 (39%), Gaps = 22/215 (10%)

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE----------------YKRISYILFDV 239
           ++           S   + +  +K  + Y   E                 + I   L   
Sbjct: 77  IVELEAKKQNITVSEEDVQKEVDKLAEQYGGEEALTQFLEMYGYSLDEIKENIKMNLNVK 136

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
              E  I+I   E+++ +++NK  + +PE      ++   +++A E  Q L+ G+ F +L
Sbjct: 137 KLLEPTIKIEESEIKSYFDENKASFDTPEQVKASHILVDTEEKAKEVKQKLQDGEDFAEL 196

Query: 300 AEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A+      S       LG FSK  +      ++ FSL K G+ +  +   FGY I  V +
Sbjct: 197 AKTYSTDTSNNQQGGELGYFSKGQMT-PEFEEAAFSL-KAGEISDPVKTEFGYHIIKVED 254

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            K +   +++E K ++ N +   K S       + 
Sbjct: 255 KKEAKEATYEESKDEVKNILLEEKLSTAFSTWIQE 289


>gi|150006852|ref|YP_001301595.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides distasonis
           ATCC 8503]
 gi|255016117|ref|ZP_05288243.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_7]
 gi|256842537|ref|ZP_05548039.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides sp. D13]
 gi|262384400|ref|ZP_06077535.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_33B]
 gi|298377277|ref|ZP_06987230.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_19]
 gi|301308674|ref|ZP_07214626.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 20_3]
 gi|149935276|gb|ABR41973.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides distasonis
           ATCC 8503]
 gi|256735893|gb|EEU49225.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides sp. D13]
 gi|262294103|gb|EEY82036.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_33B]
 gi|298265691|gb|EFI07351.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_19]
 gi|300833198|gb|EFK63816.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 20_3]
          Length = 711

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 97/707 (13%), Positives = 220/707 (31%), Gaps = 126/707 (17%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
              +   FL    S + +       +  +  + V    +     +   M   + G     
Sbjct: 23  FAFIIGDFL---NSGSTYFRQSQERIAEIDGEVVKIQDYQGRVDEMAEMYKMQSGSASLP 79

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE---------IARSPLFHGK 128
           E      + + + D +V    LD+    +G+      ++           I +  +F   
Sbjct: 80  EE-YMTQIRQSVFDAMVQEVVLDEATAKLGMGVSPEELFDMVQGENISPLIQQMQMFTNP 138

Query: 129 -DNKFSHDVFVSRLAR---------------EGINEKEY----IDHYTKMLSRTDVVGMF 168
               F     ++ L +               + I  K +      +  +         + 
Sbjct: 139 QTGAFDKAALLNFLKQIDSDNIASYPADQQAQLIQAKNFWLFWEKNIKRQRLEQKYTTLL 198

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAP 227
              +  ++L   +A     EN  + Y + +   +P    + S + + + + + K+ Y+  
Sbjct: 199 SKAISANSLDAKEAYNDNAENSDIIYAMQSYATIPDSTIEVSKSEIEKLYNQRKELYKQK 258

Query: 228 EY-------KRISYILFDVHEKEKKIEISNDELQA------------------------- 255
           E          I     D  + + +IE   +EL                           
Sbjct: 259 ESKVIKYIAVDIRPSKEDYDKAQAEIESLKEELATSERVADVVNENSEVPYVDAFFTEKA 318

Query: 256 --------------------EYEKNKEKYF-------SPEIRTVEQLVFPNQKEA----- 283
                                +E +K + F       +P+   V  ++   + EA     
Sbjct: 319 LDPEMKQFATTSEVGAVYGPVFENDKYRMFKLVDKTVAPDSVKVSHIMLAGKSEAETTAL 378

Query: 284 -DEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYI---PDVSLADSIFSLAKKG 336
            D    +LK G  F +LA++        +   LG F++       +     ++FS     
Sbjct: 379 ADSLMGALKGGANFAELAKKYSADQAAENGGELGWFTEVTALRGVNDDFKKAVFSTPLNE 438

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN-QMRITKASEKVKEDYKRLEEFL 395
               V+   +G  +  V+    +        K  IA+  M ++ +S+     Y  L +F+
Sbjct: 439 V--AVVKSLYGTHLVKVTEKTGNVE------KYKIADIDMTVSPSSKTYSNIYNELNQFV 490

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           +   SM ++    K    +L  +  A      + + +I     ++   F ++D  S    
Sbjct: 491 SKNNSMAKLEENAKEAGYNL--ISGATVTTDDQLLGSIKNSRPVIRWAF-QNDKGSISEI 547

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
               D  ++   ++ SI    R ++ V   ++ +    K  +++   A +L  +      
Sbjct: 548 FECSD-KFVVAAVEGSISEGYRPVDMVAPALRAELAAQKKGDKI---AQELAAKNL---T 600

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVF 574
           +     + +G+S+ +   +N         G    ++ + S         P++      VF
Sbjct: 601 SVEAYAETMGSSVDSVKFVNFGTRRIAGIGIEPNLNAMVSMAQVDQVSAPVKGNNGVYVF 660

Query: 575 KV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           KV   +K G    + + I  L       +    I  + +   V  + 
Sbjct: 661 KVYARNKDGKEFNEAEEIRALDASNAYRVGFQAIQSMVNNAKVEDNR 707


>gi|167036601|ref|YP_001664179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039253|ref|YP_001662238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X514]
 gi|300913893|ref|ZP_07131210.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X561]
 gi|307725422|ref|YP_003905173.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X513]
 gi|320115028|ref|YP_004185187.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166853493|gb|ABY91902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X514]
 gi|166855435|gb|ABY93843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300890578|gb|EFK85723.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X561]
 gi|307582483|gb|ADN55882.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X513]
 gi|319928119|gb|ADV78804.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 301

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 88/210 (41%), Gaps = 15/210 (7%)

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD---VHEKEKKIEI 248
           +   +L    +      ++  +   ++K K+  +    + +   L       E  K +++
Sbjct: 85  IAEKLLVQEALKNNITVTDKEIEDEYQKQKEVNKDITKEDVKNYLLINKLFDEYTKDVKV 144

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           + +EL+  YE N+E++   E      ++  ++K A++ +  L KG+ F  LA+E     +
Sbjct: 145 TEEELKKYYEDNEEQF---ETVKASHILVVDEKTAEDIYNRLMKGEDFATLAKEYSVDTA 201

Query: 309 ----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F    +        +FSL KKG+ +  +   +GY I     +       F
Sbjct: 202 TKDQGGDLGEFPHGVMV-PEFDQVVFSL-KKGEISKPVKTDYGYHIIKSDGVI---IKPF 256

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            EVK  I + +   K ++ + E Y  LE+ 
Sbjct: 257 DEVKDTIESYLLDDKKNQVIIEKYDALEKA 286


>gi|309388299|gb|ADO76179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halanaerobium
           praevalens DSM 2228]
          Length = 343

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 132/397 (33%), Gaps = 83/397 (20%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFIN-----SWKQEL 64
            +  I +++L VP     + +   +V+ +       V  +++            +   ++
Sbjct: 9   VITGIIMLILAVPAAAQDIQEVNETVTEADQEIAAYVNSEEISMQELEQFAGVRNILMQI 68

Query: 65  GMISQKIGFVVNSERARSV---GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
              +Q+ G V+    A         K  L+ L++   + Q  +   L+     +      
Sbjct: 69  LQTNQEFGSVMLQTEAGQQVVDEFQKLKLEQLITNKLMVQEAKSRKLKVSDEEMNKI--- 125

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
                     F   +    L ++              LS   +          S     +
Sbjct: 126 ----------FDQQI--QALKQQN------------QLSEEQLEAAIQKQGFESMKEYKE 161

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                                             +FE   + +   + +          E
Sbjct: 162 L---------------------------------FFENNMNGFLINKLR---------EE 179

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
              K+++S +E++  Y+ NK+++ S   + V  ++F +Q +A++    +K G  F ++A+
Sbjct: 180 VVNKVKVSEEEVKDYYQNNKKQFESEAEKKVSHILFDDQAKAEKVLAEIKAGADFAEMAK 239

Query: 302 EQG---KSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +      +    +LG  S      D +  D+   L         +   FG+ +  V++ +
Sbjct: 240 KHSTGPTADKGGNLGYVSANERGLDQTFRDAAMKLEVGEITNEPVKTQFGFHLIKVTDYR 299

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            +    F+EVK  I + ++  K S+  ++  + L E 
Sbjct: 300 EAGVRDFEEVKAQIESNLKNKKKSQAFQDFVENLREK 336


>gi|312142429|ref|YP_003993875.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halanaerobium sp.
           'sapolanicus']
 gi|311903080|gb|ADQ13521.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halanaerobium sp.
           'sapolanicus']
          Length = 340

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/400 (13%), Positives = 135/400 (33%), Gaps = 87/400 (21%)

Query: 12  WVAKIFLVVLFVPFLIWGLS------DALFSVSGSSTVVSVGRQKVPFSSFI-----NSW 60
              K   V+  + FL++ +S      +   S+  +     V  +++           N  
Sbjct: 2   IFIKKVFVLTAIIFLVFSMSAMAQNIENTMSLDQTGPAAVVNGEEISRQELEGFAALNEI 61

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKI---LDNLVSGATLDQFIEDIGLEADHGRVWG 117
             ++   +Q+ G V+    +    +++ +   LD L+S   + Q  ++ GLE     +  
Sbjct: 62  LMDILQSNQEFGTVLLQTESGQELIEEFMRYKLDQLISTKLMVQEAKNRGLEVSDQEI-- 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
                                                         ++   + G++  N 
Sbjct: 120 --------------------------------------------NQIIDQQIAGIKQQNN 135

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L DQ      +      +              +   +   E   D +   + +       
Sbjct: 136 LNDQQLEMALQQEGFASL--------------DEYKSLLIESNMDRFFIEKLRT------ 175

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
              +  ++I IS+ E++  Y +N+ ++  P    +  ++F    +A+E    ++ G  F 
Sbjct: 176 ---DITEEITISDAEVEEFYNENQAQFAIPAEYRISHILFNEADKAEEVLTQIESGADFA 232

Query: 298 QLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHV 353
           ++A+E      + +   LG  + +     ++  +     + G  +   +   FG+ I  +
Sbjct: 233 EMAKEHSIGPTAENGGDLGFIAADDRGIDAVFLNAAKELEVGQVSESPVETQFGFHIIKI 292

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           ++ +   +  F E+K ++  +M   +A++   E    L E
Sbjct: 293 TDYRDGSSREFAEIKDELKEEMLSQRANQLWNEFIIGLRE 332



 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKN--LGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
           + KA + VL   + G +F ++ K   +G +      +  +  +++      ++      V
Sbjct: 215 ADKAEE-VLTQIESGADFAEMAKEHSIGPTAENGGDLGFIAADDRGIDAVFLNAAKELEV 273

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQ 613
             V   P+E    + + K+T+ + G  +E    KD+    +       L +  I  L+  
Sbjct: 274 GQVSESPVETQFGFHIIKITDYRDGSSREFAEIKDELKEEMLSQRANQLWNEFIIGLRED 333

Query: 614 YSVTVH 619
             +T++
Sbjct: 334 AEITIN 339


>gi|298207424|ref|YP_003715603.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Croceibacter
           atlanticus HTCC2559]
 gi|83850060|gb|EAP87928.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Croceibacter
           atlanticus HTCC2559]
          Length = 700

 Score =  130 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 90/571 (15%), Positives = 192/571 (33%), Gaps = 59/571 (10%)

Query: 24  PFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
            F++  +  +    S  G +TV +VG + +  + F      ++ + S+++G   ++ +A 
Sbjct: 24  SFVLADVIRNGGFSSSKGENTVATVGGENIDRTEFAK----QVDLYSKQLGPNASTMQAV 79

Query: 82  SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG----EIARSPLFHGKDNKFSHDVF 137
                 ++ D  V    L Q  E +G+E    ++      ++  +P F  ++  FS    
Sbjct: 80  -----NRVYDAKVREVVLAQQFEKLGIEVSPEQLKATMALQLEGNPTFSDENGTFSEQKL 134

Query: 138 VSRLAREGINEKE-------YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
              LA    +  +       Y D        T    M   G+  + L   QA        
Sbjct: 135 QEYLANIKASSPQAYEQWKNYEDQVALAAKETQYFNMIKAGVGATLLEGKQAYLLENNTV 194

Query: 191 SVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
            V+Y+ +    V  + A  S   +  + + + D Y     + + Y+LF+    +  +E  
Sbjct: 195 DVEYVKIPWTAVDESEAQVSKDEIKAYIKAHPDKYTVEAGRDLQYVLFEEKASDADVEDM 254

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
             E+ A                    +  N+ E+ +    LK  K              D
Sbjct: 255 KAEVAA--------------------MAENRVESGDTLLGLKNSKNLETFVNANSDVRYD 294

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
            +     K+ +P    AD +F+L  KG+            ++ + + K          K 
Sbjct: 295 GNYKF--KKNLPK-DFADELFNL-NKGEVYGPYRDGNTLKLSRLEDTKSMP----DSAKA 346

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
              + +      +   +  +  EE   L  S+  + RR++    D     ++   V G +
Sbjct: 347 --RHILISYTGLQTATDVERTEEEAKQLADSLASVLRRDRNKFTDF-ATTYSADKVSGAK 403

Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
              + +           D     +        S     I +     D++    L  + ++
Sbjct: 404 GGDLGFFTPGRMVPVFNDYVFQNNEGDLGVVKSQFGFHIIDIQEQTDKEKAVKLATIVRE 463

Query: 490 WKT-VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG--Y 546
            +   KT  ++ ++  +  +  SK   +F ++ K+   +      +  +D      G   
Sbjct: 464 IEASEKTTNDLFAETTKFEIAASKG--DFAELAKSSDLTARPVKGVKALDENIPGVGRQR 521

Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
             +S  F+    +      +    YVV +VT
Sbjct: 522 SIVSWAFNEETNVGDVKRFDVPQGYVVVQVT 552



 Score = 37.7 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 11/129 (8%)

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIFS 331
           +  N K+A+     + KG    ++A+ QG  +   +  +     +     +  +  + FS
Sbjct: 572 IIKNNKKAEILKSRI-KGNTLAEIAQNQGVQIQTSNALNLKSPTLTGAGNEPEVVGAAFS 630

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFT----VSFQEVKKDIANQMRITKASEKVKED 387
           L K+G  +  + G  G  +  V     +       +F   + +       TKA   +KE 
Sbjct: 631 L-KEGATSAPLQGKNGVYVVKVVKRNEATPLDNYKAFSFQESNKRTSGVNTKAYNALKE- 688

Query: 388 YKRLEEFLA 396
              +E+  +
Sbjct: 689 ATEIEDNRS 697


>gi|187736088|ref|YP_001878200.1| hypothetical protein Amuc_1599 [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426140|gb|ACD05419.1| hypothetical protein Amuc_1599 [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 591

 Score =  130 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/531 (12%), Positives = 160/531 (30%), Gaps = 71/531 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML+ +RK +   +A + LV + + F+   +S    +     T VSV  +      + N  
Sbjct: 1   MLDYLRKHTIVIMAAMALVFVGLMFVGGDVSGGSLTGMFKQTFVSVDGKSYGEKDYNNMG 60

Query: 61  KQELG---MISQKIGFVVNSERARSVGLDKK--ILDN-------LVSGATLDQFIEDIGL 108
           +  L          G ++    +    L +   +L         L     + +    +GL
Sbjct: 61  RTGLSVAFSFPSTFGPLLQDNFSSEENLRELCHLLKTNNPNAAFLAYRGIIRREAGRLGL 120

Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG-----INEKEYIDHYTKMLSRTD 163
                 +   I   P F      F    + + ++  G     + E+         +S   
Sbjct: 121 TPSTAEIDDAICNIPEFQDDKGVFDPQKYDNFISMRGNMGKKLQEELLRGLMEDTISLER 180

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +  +  GG+       +       +  +++   L         DP    +  +++K+K+N
Sbjct: 181 IKDVLAGGISVEPGFAEAVAESNSQQITINTAFLEKSAFRPKTDPGEEEIKTFWDKHKEN 240

Query: 224 YRAPEYKRISYILFDV---HEKEKKIEISNDELQAEY---EKNKEKYFSPEIRTVEQLVF 277
           Y+  E +  +   F      +  K  +ISN  ++          E   +   R ++Q + 
Sbjct: 241 YKNEEARFFTVYTFIPAGDAQAPKPGDISNATMETMNLVENDIWEPLNATNGRNMDQAIS 300

Query: 278 PN----------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL-- 325
                       +K++  A       ++  Q   +        +L   +       +L  
Sbjct: 301 EALAKTPGVCKMEKKSYTAVTRKNAPQEINQAINQSASDGRSANLLDVAFSLAGAPALNA 360

Query: 326 -ADSIF---SLAKKG--DFTPVIHGSFG-YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
            AD+     + AK G    + +     G  V+  +  I P   + ++  +      +  +
Sbjct: 361 DADAKAIEEARAKTGAEQISTMQVLENGQVVLIRLEGITPVKALPYETARNSARADLLES 420

Query: 379 KASEKVKEDYKRLEEFLALGTS----------------------------MDEISRREKI 410
              E + +    L   L    +                            +  ++ +   
Sbjct: 421 MTVESMNKAATELNTELQKAENPVEQFNAIAGKTGAKTASYGPFVNPNVLLSSVNLQNAK 480

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
              +L  +     + +      +P  E++       + P      +   DG
Sbjct: 481 TQEELQSLLERAMNSRLAPPKELPAPEEVFQAASVIN-PGQMAQPINTGDG 530


>gi|295111179|emb|CBL27929.1| Parvulin-like peptidyl-prolyl isomerase [Synergistetes bacterium
           SGP1]
          Length = 303

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 75/172 (43%), Gaps = 8/172 (4%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-EADEAF- 287
           +  S     +    K ++ + +E Q  Y+++K+++  PE      ++  +    AD    
Sbjct: 110 RTQSLAQRAMRNAVKDVKATEEEAQKFYDEHKDQFTQPERIHARHILISDDATSADTIAR 169

Query: 288 --QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
               LK G  F + A++      +     LG F+KE +     +D+ F+L + GD +  +
Sbjct: 170 VQADLKAGASFDEEAKKLSLCPSAPQGGDLGEFTKEQMV-PEFSDAAFALKEPGDVSEPV 228

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
              FG+ I  +    P+  + F +VK  I   +   +  E++K   + L++ 
Sbjct: 229 KSPFGWHIIRLEGRTPAQLIPFDDVKDQILQDLTGQQQQERIKAKVEELKKA 280



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 14/160 (8%)

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK------RLEEFLALGTSMDEISR 406
           V   +      + E K       RI      + +D        R++  L  G S DE ++
Sbjct: 126 VKATEEEAQKFYDEHKDQFTQPERIHARHILISDDATSADTIARVQADLKAGASFDEEAK 185

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
           +  +     P     G   +  +   +P         F   +P      V  P G +  +
Sbjct: 186 KLSLC----PSAPQGGDLGEFTKEQMVPEFSD---AAFALKEPGDVSEPVKSPFG-WHII 237

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
           +++   PA+    ++V   + +D    +  E + +K  +L
Sbjct: 238 RLEGRTPAQLIPFDDVKDQILQDLTGQQQQERIKAKVEEL 277


>gi|282882421|ref|ZP_06291048.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B]
 gi|281297741|gb|EFA90210.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B]
          Length = 249

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 69/161 (42%), Gaps = 5/161 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
           + + +    IE++  E++  Y  +KE +   +      ++  + K+A+E +  +K G  F
Sbjct: 84  YTLGKLLSNIEVTEKEIEDFYNNHKEHFTKDQTVRASHILVDDLKKAEEIYNRIKDGADF 143

Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            + A+      S      LG FSK  +      D+ F++ + G+ +  +   FGY I  +
Sbjct: 144 SKEAKNNSTCPSKENGGDLGIFSKGQMVK-EFEDACFNM-EVGEVSKPVKTQFGYHIIKL 201

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
                +  ++ +E +  I   +R  K  E  K+    L E 
Sbjct: 202 VEKNKAQEMTLEESRDHIIEDIRRQKEQEIYKDKISSLREK 242


>gi|313888943|ref|ZP_07822603.1| putative peptidylprolyl isomerase PrsA1 [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845116|gb|EFR32517.1| putative peptidylprolyl isomerase PrsA1 [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 249

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 8/173 (4%)

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
           +  E    +Y L    +     E+ +++++  YE+NK+ +   E      ++   + +A 
Sbjct: 75  KTKESMLKTYAL---GKLLATAEVKDEDIKKFYEENKDAFKQGESADASHILVEEEDKAR 131

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           E ++ +K G  F +LA+E     S     +LG+F+K  +      D++F   + G  T  
Sbjct: 132 EIYEKIKNGGDFEELAKEYSTCPSKEKGGNLGTFTKGQMVK-EFEDAVFE-NEVGTITEP 189

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +   FGY I  ++    +  +SF EVK  I  Q+R  K  E   +    L++ 
Sbjct: 190 VKTQFGYHIIKINQKNDARELSFDEVKDRIVEQVRRQKEQEIYNKKITELKDK 242



 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 12/158 (7%)

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKV---KEDYKRLEEFLALGTSMDEISRREKIV 411
            +K      F E  KD   Q     AS  +   ++  + + E +  G   +E+++     
Sbjct: 94  EVKDEDIKKFYEENKDAFKQGESADASHILVEEEDKAREIYEKIKNGGDFEELAKEYSTC 153

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
                  +  G   KG+ V               +++  +    V    G Y  ++I + 
Sbjct: 154 PSKEKGGNL-GTFTKGQMVKEFED-------AVFENEVGTITEPVKTQFG-YHIIKINQK 204

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
             AR+   +EV   + +  +  K  E  + K  +L  +
Sbjct: 205 NDARELSFDEVKDRIVEQVRRQKEQEIYNKKITELKDK 242


>gi|300813778|ref|ZP_07094088.1| peptidylprolyl isomerase PrsA3 family protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|300512121|gb|EFK39311.1| peptidylprolyl isomerase PrsA3 family protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 249

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 5/161 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
           + + +    IE++  E++  Y  +KE +   +      ++  + K+A+E +  +K G  F
Sbjct: 84  YTLGKLLSNIEVTEKEIEDFYNNHKEHFTKDQTVRASHILVDDLKKAEEIYNRIKDGADF 143

Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            + A+      S      LG FS+  +      D+ F++ + G+ +  +   FGY I  +
Sbjct: 144 SKEAKNNSTCPSKENGGDLGIFSRGQMVK-EFEDACFNM-EVGEVSKPVKTQFGYHIIKL 201

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
                +  ++ +E +  I   +R  K  E  K+    L E 
Sbjct: 202 VEKNKAQEMTLEESRDHIIEDIRRQKEQEIYKDKISSLREK 242


>gi|126701124|ref|YP_001090021.1| putative foldase lipoprotein [Clostridium difficile 630]
 gi|254977125|ref|ZP_05273597.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile QCD-66c26]
 gi|255094454|ref|ZP_05323932.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile CIP 107932]
 gi|255102710|ref|ZP_05331687.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile QCD-63q42]
 gi|255308531|ref|ZP_05352702.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile ATCC 43255]
 gi|255316205|ref|ZP_05357788.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile QCD-76w55]
 gi|255518867|ref|ZP_05386543.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile QCD-97b34]
 gi|255652046|ref|ZP_05398948.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile QCD-37x79]
 gi|306521784|ref|ZP_07408131.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile QCD-32g58]
 gi|115252561|emb|CAJ70404.1| Peptidylprolyl isomerase PrsA-like [Clostridium difficile]
          Length = 331

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/388 (16%), Positives = 134/388 (34%), Gaps = 81/388 (20%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           V  + + ++ V      +S    S S   TV +V   K+    F  +       + Q  G
Sbjct: 4   VITLVIAMILV------VSVTACSSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYG 57

Query: 73  FVVNSERARSV-----GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
             +  +               ILD L++   +    +   L      V            
Sbjct: 58  KDIWDKEVEKGVKYKDKFKDLILDQLITTEVIYSQAKKDNLLPKKEDVEK---SFKELKD 114

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
              K   + +  +L + GI+++   D   K L+  +                        
Sbjct: 115 AMGK--DEKYKEQLKKLGIDDEFLRDQQEKDLAMQNYQS--------------------- 151

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
                        +       S+  + ++++ +KD ++  E +    +L  V +  K + 
Sbjct: 152 -------------NFAKKTKISDEEMKKYYDTHKDEFKKDEVEASHILLKTVDDNNKPLS 198

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
                                           +K+A+EA + +K G+ F ++A++  +  
Sbjct: 199 DKEKA-------------------------EAKKKAEEALKEVKSGEDFAKVAKKYSQDT 233

Query: 308 S---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           S      LG FS+  +      D+ FS+ KKG+ + ++   +GY I  V++     T SF
Sbjct: 234 SASDGGKLGFFSRGQMV-AEFEDAAFSM-KKGEVSDLVETQYGYHIIKVTDRINEQT-SF 290

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLE 392
           ++ K+ I +Q+   K  E++++  K  +
Sbjct: 291 EDAKETIKDQLLKNKYQEQIEKLTKEAK 318


>gi|228472535|ref|ZP_04057295.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228275948|gb|EEK14704.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 707

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 103/653 (15%), Positives = 222/653 (33%), Gaps = 88/653 (13%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           LE IRK  RT    + + +    F+I G+     +      + SV    + +  F    +
Sbjct: 4   LEKIRK--RTVFLILVIGLALFAFVISGIFS-RNTTPDQLVIGSVNGDDISYREFSTQVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
                +   IG            +   +    V G  +DQ  E +G+     +++  I  
Sbjct: 61  NTTRNMGGSIGQGY---------IVNALWQQAVQGKIIDQQFEKLGISVGKEQIFAMIKR 111

Query: 120 ----ARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKM------LSRTDVVGMF 168
               A+ P F  +  +FS   F   +A+   +N  +Y     +         R   + + 
Sbjct: 112 VPQYAQDPQFQDEKGQFSIAKFAQVIAQIKKVNPAQYQQWQAEEKSYVDAAKRELYLSLI 171

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAP 227
             G+  +    + A     +  + +Y+ L    +P      S+A +  + + +K  +   
Sbjct: 172 RAGLGVTLKDGEDAYHRQADKVTFNYVTLPYTSIPDSEVKVSDAEIDAYVKAHKKQFEQK 231

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E + I ++       E  I+     LQA                  ++V+ +Q++A++  
Sbjct: 232 EMRNIQFVWVTETASEADIKQVEQSLQALN--------------APRVVYNSQRQANDTL 277

Query: 288 QSLKKGKKFIQLAEE-------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                   F  LA +       +   +   SL   SK+ +P    A+++++L   GD   
Sbjct: 278 ------PGFGALAAKDVPQFVNENSDVPFDSL-YVSKDRLP-ADHAEALYNLP-VGDLYG 328

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK-RLEEFLALGT 399
               +  Y    + + KP+  +    +       +   +   + KE+ K + E+ LA   
Sbjct: 329 PYKEANTYRYTRMLSKKPNAQMRASHILIAYKGSLPGNETITRSKEEAKAKAEDILAKVK 388

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           + ++ +    + S D       G          +P     +F     D  L + +     
Sbjct: 389 AGEDYAALAMVNSDDSSNAPNGGDLDFFSPGMMVPTFNDYVFHGKVGDIGLVETN----- 443

Query: 460 DGSYMWVQIKESIPARDRKLEEVL-TDVKKDWKTVKTAE-EVSSKANQLVLEYSKEGKNF 517
                   I +    R    E V    + ++ +  K  + E+ +K      +  +  K+F
Sbjct: 444 ----FGFHIIKITDQR----EGVQLATIVRNIEPSKATQNEIYTKLTAFNEQALQHPKDF 495

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
             +    G ++L  N ++ M  +    G     +   F+   ++      +    Y++ +
Sbjct: 496 ASLAAKAGYNVLPANNLDAMAEDIPGLGNNRALVRWAFADDTKVGDIHREDVKDGYIIAQ 555

Query: 576 VTN-------------SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
           +T                V P+  K+K    L++ +    L+  +A    Q  
Sbjct: 556 LTKKISEGVASASDARPIVAPILIKEKKAKQLSEKLKGSTLEQ-VAQASGQAG 607


>gi|322420756|ref|YP_004199979.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320127143|gb|ADW14703.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 323

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 115/360 (31%), Gaps = 77/360 (21%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
               + VV V    +       + K  L     K+   +  E+ +        L+ L S 
Sbjct: 27  GQTGAPVVKVNGSVITKPELDRAVKALLA--QNKVTQALPPEQMKKAA--DSALEQLTSA 82

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHY 155
             L Q  + + ++    +V  +      +      F + + +   L   G+ E E  +  
Sbjct: 83  ELLYQEGKKLEIKDLEQQVEQK------YQKNRTSFPTKEEYEKALKATGMTEAEVREMM 136

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            K +   + V                                  +   + A  S+A   +
Sbjct: 137 RKEIVVNNFVD---------------------------------KQFSSKATCSDAEARK 163

Query: 216 WFEKYKDN-YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           +++  K   +   E  R  +IL  V +K                        PE +    
Sbjct: 164 FYDDNKAKLFEKGERLRARHILVSVDQK----------------------GGPEEKK--- 198

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFS 331
                +++A+   + ++KG+ F  +A+ +    S      LG F K  +       + F+
Sbjct: 199 ---KAREKAEALLKRVQKGEDFAAVAKVESTCPSRANGGELGVFGKGQMT-PPFEKAAFA 254

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           L  KG+ + V+   FGY I  +          F++VK  IA  ++  +  + V      L
Sbjct: 255 LKGKGELSKVVETEFGYHIIKLEERIAPSNDRFEDVKFQIAQYLKKEQTRKAVAAFLAEL 314



 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
           +  ++   KA  L L+  ++G++F  + K         N                    F
Sbjct: 195 EEKKKAREKAEAL-LKRVQKGEDFAAVAKVESTCPSRANGGELGVFGKGQMTPPFEKAAF 253

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAY 609
           +   +      +E    Y + K+           +     + Q + K+     + + +A 
Sbjct: 254 ALKGKGELSKVVETEFGYHIIKLEERIAPSNDRFEDVKFQIAQYLKKEQTRKAVAAFLAE 313

Query: 610 LKSQYSVT 617
           L+ +  + 
Sbjct: 314 LRHKAKIE 321


>gi|15896462|ref|NP_349811.1| peptidylprolyl isomerase [Clostridium acetobutylicum ATCC 824]
 gi|15026287|gb|AAK81151.1|AE007817_5 Parvulin-like peptidyl-prolyl isomerase, PRSA B.subtilis ortholog
           [Clostridium acetobutylicum ATCC 824]
          Length = 353

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/391 (13%), Positives = 108/391 (27%), Gaps = 89/391 (22%)

Query: 15  KIFLVVLFVPFLIWGLSDALFS----VSGSSTVVSV-GRQKVPFSSFINSWKQELGMISQ 69
           +I   +L   F    +  ++         S  V ++ G Q +         K  +  +  
Sbjct: 26  QIATALLVGMFTFSAVGCSMVEKRPEAINSKVVATIYGNQTITRGEIDKLAKGTVEQLKS 85

Query: 70  KIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS-PLF 125
           + G            L K+   IL +L+      +  +D  +      +   +      +
Sbjct: 86  QYGDSYEKNEEAVAALKKQKEQILTSLIDQKIFLKKAKDQKITLTKDEIKTNVDDVYAQY 145

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
             +    S   F S+L++ G    E+ D          ++   V                
Sbjct: 146 QQEFKTESE--FKSQLSQYGYTVAEFKDQLKNRAISNKLIQQVV---------------- 187

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
                                  S+    ++++ +K++Y                     
Sbjct: 188 ------------------KDVKVSDDEAKKYYDSHKNSYT-------------------- 209

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
                               SP    +  ++   +KEA      + KG+ F  +A++   
Sbjct: 210 -------------------QSPNTVHLAHILVKTEKEAKAVKARIDKGEDFATVAKQVST 250

Query: 306 SLS---DISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
             S      LG   + +   D +   +   L      +  +H  FG+ +           
Sbjct: 251 DGSKEKGGDLGDIQENDSNYDKTFMAAALKL-NDNQVSAPVHTQFGWHVIKCIKKTEYPV 309

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             F  VK DI   +  TK     ++  K+ E
Sbjct: 310 KDFNSVKDDIKQTVLSTKQKSVYQKTLKKWE 340


>gi|302871263|ref|YP_003839899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574122|gb|ADL41913.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 335

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/390 (14%), Positives = 123/390 (31%), Gaps = 84/390 (21%)

Query: 6   RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
           R     +     ++++    +I    + +  V  +  V  V  +K+    F  +++ ++ 
Sbjct: 4   RTKIAIFFITAIVLLII---VIAVTPEMVKYVDENRAVAIVNGEKITKKEFAINYRSQIN 60

Query: 66  M--ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
              + +        ++     + + +LD L+      Q      +            +  
Sbjct: 61  YYGLDKAFLSQKVGDKTYEQQIKENVLDGLIVRQIELQQARKRNITLTSTEKKAIDQQIE 120

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
               K +  S   F   L   G  E EY D       ++ +V                  
Sbjct: 121 --QYKSDSQSGAEFKQYLQTIGATENEYKDQV----IKSQIVSKLY-------------- 160

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
                             V      S+A +  ++  +K ++          +        
Sbjct: 161 ----------------DEVTKSQKASDAEIESYYNSHKSDF----------VEVKASHIL 194

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
            K+  S +E                           +++A+E  Q +K G+ F +LA++ 
Sbjct: 195 FKVNDSKEE------------------------AAKKRKAEEVLQMIKSGQSFEKLAQKY 230

Query: 304 GKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            +          LG F K  +      D+ FSL   G+ + V+  S+G+ I  V++ K  
Sbjct: 231 SEDETTKQKSGDLGYFRKGQMVK-EFEDAAFSL-NIGEISSVVKTSYGFHIIKVTDRK-- 286

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYK 389
             +S  EVK +I + +   K  E  +   +
Sbjct: 287 -QLSLNEVKDEIKSTIESQKKDEYYQSLVE 315


>gi|255657457|ref|ZP_05402866.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile QCD-23m63]
 gi|296449052|ref|ZP_06890842.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
 gi|296262145|gb|EFH08950.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
          Length = 331

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/388 (16%), Positives = 134/388 (34%), Gaps = 81/388 (20%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           V  + + ++ V      +S    + S   TV +V   K+    F  +       + Q  G
Sbjct: 4   VITLVIAMILV------VSVTACNSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYG 57

Query: 73  FVVNSERARSV-----GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
             +  +               ILD L++   +    +   L      V            
Sbjct: 58  KDIWDKEVEKGVKYKDKFKDLILDQLITTEVIYSQAKKDNLLPKKEDVEK---SFKELKD 114

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
              K   + +  +L + GI+++   D   K L+  +                        
Sbjct: 115 AMGK--DEKYKEQLKKLGIDDEFLRDQQEKDLAMQNYQS--------------------- 151

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
                        +       S+  + ++++ +KD ++  E +    +L  V +  K + 
Sbjct: 152 -------------NFTKKTKISDEEMKKYYDTHKDEFKKDEVEASHILLKTVDDNNKPLS 198

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
                                           +K+A+EA + +K G+ F ++A++  +  
Sbjct: 199 AKEKA-------------------------EAKKKAEEALKEVKSGEDFAKVAKKYSQDA 233

Query: 308 S---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           S      LG FS+  +      D+ FS+ KKG+ + ++   +GY I  V++     T SF
Sbjct: 234 SASDGGKLGFFSRGQMV-AEFEDAAFSM-KKGEVSDLVETQYGYHIIKVTDRINEQT-SF 290

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLE 392
           ++ K+ I +Q+   K  E++++  K  +
Sbjct: 291 EDAKETIKDQLLKNKYQEQIEKLTKEAK 318


>gi|89892936|ref|YP_516423.1| hypothetical protein DSY0190 [Desulfitobacterium hafniense Y51]
 gi|219666202|ref|YP_002456637.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfitobacterium
           hafniense DCB-2]
 gi|89332384|dbj|BAE81979.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536462|gb|ACL18201.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfitobacterium
           hafniense DCB-2]
          Length = 315

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/386 (12%), Positives = 104/386 (26%), Gaps = 97/386 (25%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K  +  L +   + G S    S  G      V  + +    F              +G  
Sbjct: 6   KGIIAALVLTLALTGCS----SAGGDQWAAKVNGETITEQDFAARVSNVQKAYE-GMGMD 60

Query: 75  VNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            ++++ +     +  ++L+ +++   + Q  + + L+ +   +  +        G     
Sbjct: 61  FSTDQGKEALNQVKSQVLEAMIASRLVIQEAQRLKLDVNDPSILEQEKNIIQMVG----- 115

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
               +   L ++ + E E  +++                                     
Sbjct: 116 DESQYQEWLKQQAMTEDEVKNYFAL----------------------------------- 140

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                 +  +      +      +FE  ++ Y                            
Sbjct: 141 ------SAEITKDVTVTPEQEKTFFENNQELY---------------------------- 166

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS- 311
                          E      ++   + EA      L  G  F +LA+E+       S 
Sbjct: 167 -----------GGKGEEVQARHILVETEDEAKAIIAQLDGGADFSELAKEKSTDTGSQSS 215

Query: 312 ---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
              LGSF K  +      ++ F+          +   FGY I  V + K +    ++ VK
Sbjct: 216 GGYLGSFGKGKMV-PEFEEAAFAQEVGTYTKTPVKSEFGYHIILVEDHKAATKADYEAVK 274

Query: 369 KDIANQMRITKASEKVKEDYKRLEEF 394
             +A        ++K    +  L E 
Sbjct: 275 SQVAEDALADAKAQKFGGYFDELREK 300


>gi|78222035|ref|YP_383782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
 gi|78193290|gb|ABB31057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
          Length = 339

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 123/361 (34%), Gaps = 76/361 (21%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
           S ++ V  V    +  +    + K  L   +Q     +N E ++   +++  L+ L++  
Sbjct: 43  SATTAVARVNGVDITRAELERAKKIILSR-NQMASAAMNDEMSKK--VEEAALNQLIAKE 99

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPL-FHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
            L Q  +   ++    ++  ++A     F  + +      +   L    + EKE      
Sbjct: 100 LLFQAGKKQEIKDLDKKIQEKVAEHKARFKSQAD------YEKALKEMDMTEKEVETFTR 153

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
           + +   +++                                    + A    ++    ++
Sbjct: 154 EDMVIGNLIET---------------------------------KIVANTKITDDEAKKF 180

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +   KD +R  E  R S+IL    +K    E                             
Sbjct: 181 YNDNKDKFRREEAVRASHILVSADQKASPEE----------------------------K 212

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLA 333
              +++A+   + LK G  F +LA+++     S     LG F K  +       + F+L 
Sbjct: 213 KKAKEKAEALLKQLKGGADFAELAKKESSCPSSAQGGDLGFFGKGQMV-PEFEKTAFNL- 270

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           K G+ + V+   FGY I  ++  K + TV F+E K+ I   +   K    + E    L +
Sbjct: 271 KPGEVSDVVETQFGYHIIKLAEKKDAETVPFEEAKERIVQFLTQQKVQAGIGEYVDELRK 330

Query: 394 F 394
            
Sbjct: 331 K 331


>gi|222056791|ref|YP_002539153.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
 gi|221566080|gb|ACM22052.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
          Length = 320

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 116/361 (32%), Gaps = 75/361 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           ++    V    +         ++E   I +++     +E      L K  LD L+    +
Sbjct: 26  TAVAAIVNDDVITTLE----VQKETDQIIKEMEKKGPAETPDKAALRKIALDRLIDKKLV 81

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +Q I+++ ++     +   I        K N  + +  V+ LA +G++ ++Y     + L
Sbjct: 82  EQKIKELDIKVPEEELRQSIEDV----KKQNNLTQEALVAALAGQGLSFEQYKTQLREQL 137

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  ++                                    V +        + +++E 
Sbjct: 138 ERLRLMSQ---------------------------------EVRSKIQVGEREIREYYEA 164

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
             + Y   E+ R  +I F V +   + E                                
Sbjct: 165 NHNRYGEEEFFRARHIFFKVGKDAPESEA----------------------------AKV 196

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKK 335
              A +  Q  + GK F +LA +             LG+F K  +      ++  S  K 
Sbjct: 197 MTTATQVLQEARSGKDFAELARQFSDDPAAKKDGGDLGTFKKGDMIGEI--EAAVSGMKP 254

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G+ +  +  + G+ I  +          F+EVK +I + +   K+ E+  +    L +  
Sbjct: 255 GEVSDPVKTAAGFHIIKLEERSKGKPRPFEEVKAEIEDLLYKKKSEERFNQWVNDLRKGA 314

Query: 396 A 396
           A
Sbjct: 315 A 315


>gi|326334983|ref|ZP_08201183.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692788|gb|EGD34727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 707

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 86/738 (11%), Positives = 211/738 (28%), Gaps = 153/738 (20%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           LE IRK  RT    + + +    F+I G+            +  V   K+ +  F +  +
Sbjct: 4   LEKIRK--RTVFLILVIGLALFAFVISGIFS-RTKTPDQLVIGEVNGDKISYLEFSSQVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
             L  +   IG            +   +    +    LDQ  E +G+     ++   I  
Sbjct: 61  NTLRNMGGSIGQAY---------VVNALWQQTIQSKILDQQFEKLGISVGKDQILSIISK 111

Query: 120 ----ARSPLF-------------------------------HGKDNKFS---HDVFVSRL 141
               A++P F                                 + + F     ++++S +
Sbjct: 112 VPQYAQNPQFLDDKGVFSPAKFGQVIAQIKQSNPTVYKQWQQEEKSYFDTAKREIYLSLI 171

Query: 142 AR-EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD----------QAKRFYFEN- 189
               G+  K+  D Y +   +  +  + +      +  +           +A +  ++  
Sbjct: 172 RAGLGVTLKDGEDAYHQENDKVTIKYVTLPYSSIPDEQIKISDNEIQDYVKAHKKQYQQK 231

Query: 190 --RSVDYIVLNNRHVPAIADPSNAVLTQW------FEKYKDN------Y-RAPEYKRISY 234
             R++ +++ +    P         L         +            + + P      +
Sbjct: 232 DMRNLQFVLASEVASPEDKKAIEQDLKALNNPRILYNNQTQKSDTLPGFSQVPLKDIAEF 291

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----------------------IRT 271
           +  +       + +S D+L   +          E                          
Sbjct: 292 VNENSDTPFDSLYVSKDKLPVNFADTLYNLSIGELYGPYQDGNAYKYTRMLSKIPNGEVR 351

Query: 272 VEQLVFP-----------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
              ++                    + +A+     +K G  +  LA+      S      
Sbjct: 352 ASHILIAYQGSLPGNDAITRTKEEAKAKAEGILAQIKAGGDYTALAQANSDDASNAQNGG 411

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            L  FS+  +      D +F  AK GD   ++  +FG+ I  +++++    +        
Sbjct: 412 DLDFFSRGMMVQP-FNDYVFH-AKVGDI-GLVETNFGFHIIKITDLREGVKL------AT 462

Query: 371 IANQMRITKA-SEKVKEDYKRLE-EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
           I   +  + A  + V       + + +        ++++         ++     +   +
Sbjct: 463 ITRNIEPSAATRDAVYTKITEFDAQAIKNPKEFAALAQKAG-----YDVLPANNLEALAE 517

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
           ++  +     L+   F KD  +       + DG Y+  Q+ + I A      E    V  
Sbjct: 518 DIPGLGDNRPLVKWAFEKDTKVGDVRRFDIKDG-YIVAQLTKKIEAGLASPSEARAQVAP 576

Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS--LLTTNQINRMDNENKFFGY 546
                K A+++  K          +G +   + +  G +  +     ++  +      G 
Sbjct: 577 ILIKEKKAKQLIEKM---------KGSSLEQVAQAAGEANNIQQAEGVSIKNPILPGQGA 627

Query: 547 DG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD 604
           +G         P   V    + +   YV+  +       +     ++  L          
Sbjct: 628 EGSVAGAALVLPPNKVSKPIVGDNGVYVIQVIQKDVAPALPNYSSYMGILRNQKLNRASQ 687

Query: 605 SVIAYLKSQYSVTVHDNL 622
            + + L+    +     +
Sbjct: 688 DLFSALEQTAEIKDDRAM 705


>gi|332882479|ref|ZP_08450097.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679539|gb|EGJ52518.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 705

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 93/597 (15%), Positives = 215/597 (36%), Gaps = 62/597 (10%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           LE IR  S+T      + +    F+I   +    FS    + + +V  + VP  +F    
Sbjct: 4   LEKIR--SKTVFLIAIIGLALFAFIISDFIGKGRFSNHQPTEIGTVNGEDVPIDAFRLQV 61

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +     + Q  G   + E A+       + +  V    L+Q IE +GL  +  ++   +A
Sbjct: 62  EN---AVHQANGQASSIEAAKY------VWEQNVQQILLNQQIEKLGLSVEKDQIISILA 112

Query: 121 RSPLFHGKD-----NKFSHDV---FVSRLAREGINEKEY------IDHYTKMLSRTDVVG 166
           ++PL            F       +++ L       + Y       D   +   +     
Sbjct: 113 KTPLAQNPQFVNEYGVFDPSKFTAYLNTLKSNN--PQAYAQWKMQEDAIIEGAKQQMYFS 170

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYR 225
           +   G+  +N   + A     +   + Y+ L    +     + S++ +  + +K++  ++
Sbjct: 171 LIRAGLGVTNAEAEIAYHQEKDMADISYVALQYSSIDDKNINVSDSEIKDYIKKHEKQFK 230

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
              Y+ I YI+ +        +   + +         K   PE      +VF NQ  A++
Sbjct: 231 QEAYRNIQYIVVNEKPSAADTQAEKEAI--------NKLLQPE------IVFNNQTHAND 276

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
                 + K   +  +    +  D     F  +     + AD++F+L   G         
Sbjct: 277 TIAGFAQTKNVKEFVDRHSDTPYDT---LFVSKEDLRSAYADTLFALP-VGKVFGPYEED 332

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
               ++ +    P+  V        I    + ++A+       K   +  A     +  +
Sbjct: 333 GNLKLSRMIAKDPNGAVK----ASHILIAYKGSQAATPNTTRTKEEAKAKAESLLAEAKA 388

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP--DGSY 463
                 ++     D  G + +G ++    +K   + + F +    +   T+ +   D  Y
Sbjct: 389 AGADFAALASENSDEPGANYRGGDLGF--FKRGAMVKPFEQFVFANPVGTIGIVETDFGY 446

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
             V++ +      + L  +   V+    +  T  E+ SK +   ++ S+  K+F +I K+
Sbjct: 447 HVVKVTD-KAPTVQ-LATITRKVEP---SEATLNELFSKVSNFEMKASQNPKDFSNIAKS 501

Query: 524 LGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
              ++L  + +++ D++    G     +  +F+   ++       NG +Y+V ++  
Sbjct: 502 SDLTVLRADNLHKNDDQIIGLGANRQIVQWLFNKETKVGDLKKFTNGGNYIVAQLVK 558


>gi|260685020|ref|YP_003216305.1| putative foldase lipoprotein [Clostridium difficile CD196]
 gi|260688678|ref|YP_003219812.1| putative foldase lipoprotein [Clostridium difficile R20291]
 gi|260211183|emb|CBA66654.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile CD196]
 gi|260214695|emb|CBE07344.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile R20291]
          Length = 321

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 126/365 (34%), Gaps = 75/365 (20%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV-----GLDKKIL 90
           S S   TV +V   K+    F  +       + Q  G  +  +               IL
Sbjct: 11  SSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYGKDIWDKEVEKGVKYKDKFKDLIL 70

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
           D L++   +    +   L      V               K   + +  +L + GI+++ 
Sbjct: 71  DQLITTEVIYSQAKKDNLLPKKEDVEK---SFKELKDAMGK--DEKYKEQLKKLGIDDEF 125

Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
             D   K L+  +                                     +       S+
Sbjct: 126 LRDQQEKDLAMQNYQS----------------------------------NFAKKTKISD 151

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
             + ++++ +KD ++  E +    +L  V +  K +                        
Sbjct: 152 EEMKKYYDTHKDEFKKDEVEASHILLKTVDDNNKPLSDKEKA------------------ 193

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
                    +K+A+EA + +K G+ F ++A++  +  S      LG FS+  +      D
Sbjct: 194 -------EAKKKAEEALKEVKSGEDFAKVAKKYSQDTSASDGGKLGFFSRGQMV-AEFED 245

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           + FS+ KKG+ + ++   +GY I  V++     T SF++ K+ I +Q+   K  E++++ 
Sbjct: 246 AAFSM-KKGEVSDLVETQYGYHIIKVTDRINEQT-SFEDAKETIKDQLLKNKYQEQIEKL 303

Query: 388 YKRLE 392
            K  +
Sbjct: 304 TKEAK 308


>gi|108760198|ref|YP_628739.1| putative foldase protein PrsA [Myxococcus xanthus DK 1622]
 gi|108464078|gb|ABF89263.1| putative foldase protein PrsA [Myxococcus xanthus DK 1622]
          Length = 349

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/369 (15%), Positives = 103/369 (27%), Gaps = 92/369 (24%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
            V SV  + +  + F     +EL      +  V            + +LD  +    L Q
Sbjct: 55  VVASVNGEVLSRADFEQELWRELA-----LTDVSQRTLEDVEPFKRALLDTYIHRMLLLQ 109

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
                 +      V   + R          +    F   LA+  ++  E        L+ 
Sbjct: 110 EARKHNVTVTPEEVDRGVLRL------SGDYPAGNFNEVLAQGQLSMAELRSREASRLTI 163

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
             +                                    HV +    +   L  W+  ++
Sbjct: 164 EKLF---------------------------------ASHVYSRVAVTEEELRAWYGAHE 190

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
            ++  PE                                             Q+V     
Sbjct: 191 KDFHEPEQV----------------------------------------HAAQIVVKGLD 210

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           EA      LK GKKF  LA     S        LG F +  +P  +  + +F L   G  
Sbjct: 211 EARRLQTQLKSGKKFADLARRYSLSADAKVGGDLGFFPRGQMP-PAFDEVVFKLG-VGQV 268

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK---ASEKVKEDYKRLEEFL 395
           + V+   +G+ +  V   KP+    F EV+  +  ++   K   A E  +++ ++  +  
Sbjct: 269 SDVVSTEYGFHLFRVLERKPARKREFVEVRSLVEGKLLEQKRSQAQETFEQELRQKAQVQ 328

Query: 396 ALGTSMDEI 404
               ++  I
Sbjct: 329 VNEATLQAI 337



 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
           ++ +RL+  L  G    +++RR  + + D  +    G   +G+     P  ++++F++  
Sbjct: 210 DEARRLQTQLKSGKKFADLARRYSLSA-DAKVGGDLGFFPRGQ---MPPAFDEVVFKL-- 263

Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
               + +   V   +  +   ++ E  PAR R+  EV + V+      K ++   +   +
Sbjct: 264 ---GVGQVSDVVSTEYGFHLFRVLERKPARKREFVEVRSLVEGKLLEQKRSQAQETFEQE 320

Query: 506 LVLEYS 511
           L  +  
Sbjct: 321 LRQKAQ 326



 Score = 38.4 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 6/145 (4%)

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
           +     +   +   +A +L  +  K GK F D+ +    S       +            
Sbjct: 197 EQVHAAQIVVKGLDEARRLQTQL-KSGKKFADLARRYSLSADAKVGGDLGFFPRGQMPPA 255

Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLL 603
               VF   V  V    +     + +F+V   K    +E    +      L +       
Sbjct: 256 FDEVVFKLGVGQV-SDVVSTEYGFHLFRVLERKPARKREFVEVRSLVEGKLLEQKRSQAQ 314

Query: 604 DSVIAYLKSQYSVTVHDNLIQRYLD 628
           ++    L+ +  V V++  +Q    
Sbjct: 315 ETFEQELRQKAQVQVNEATLQAIRG 339


>gi|154491017|ref|ZP_02030958.1| hypothetical protein PARMER_00934 [Parabacteroides merdae ATCC
           43184]
 gi|154088765|gb|EDN87809.1| hypothetical protein PARMER_00934 [Parabacteroides merdae ATCC
           43184]
          Length = 712

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 87/706 (12%), Positives = 211/706 (29%), Gaps = 123/706 (17%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
              +   FL    S + +      TV  V  + +    F +   +   M   + G     
Sbjct: 23  FAFIIGDFL---NSGSTYFRQSQETVAEVDGEVIKIQEFQDRVDEMTEMYKMQTGSTSLP 79

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE---------IARSPLFHGK 128
           E      + + + D +V    L++   ++G+      ++           I +  +F   
Sbjct: 80  EE-YQTQIRQSVFDGMVQDIVLNEATSELGMGVGPEELFDMVQGENISPMIQQMQMFVNP 138

Query: 129 -DNKFSHDVFVSRL---------------AREGINEKEY----IDHYTKMLSRTDVVGMF 168
               F     ++ L                 + +  +++      +  +         + 
Sbjct: 139 QTGAFDKTALLNFLKTIDDDNIANYPADQQAQLLQGRQFWMFWEKNIKRQRLEQKYTTLL 198

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAP 227
              +  + L    A      +  + Y + +   +P      S + + + + + K+ ++  
Sbjct: 199 SKAVSANKLDAKDAFDGSAVSSDIVYAMQSYASIPDSTIQVSKSDIEKLYNQRKELFKQK 258

Query: 228 ------------------------EYKRISYILFDVHEKEKKIEIS-------------- 249
                                   E + +   L    +    +  +              
Sbjct: 259 EGKVIKYIAVDIRPSKEDYDKASAEIESLKSELATSEKVADLVTENSEIPYMDAFFTENA 318

Query: 250 -NDELQAE-------------YEKNKEKYF-------SPEIRTVEQLVFPN-------QK 281
            + E++               +E +K + F       +P+   V  ++  N       + 
Sbjct: 319 LDPEMKQFVKTANVGDVYGPVFENDKYRLFKLVDKTVAPDSVKVSHIMLANTGDEAAIKA 378

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYI---PDVSLADSIFSLAKK 335
           +AD     LKKG  F+ LA+E     +      LG F++       +     ++FS    
Sbjct: 379 KADSLLNVLKKGGDFVALAKEYSADQAAEKGGELGWFTEATALRGVNDDFKKAVFS-TPV 437

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
            D++ ++   +G  I  V++   +      +V       M ++ +++     Y  L +F+
Sbjct: 438 NDYS-IVKSLYGTHIIKVTDKTTNVDK--YKVAD---IDMTVSPSTKTYGNIYNELNQFI 491

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           +   ++D++    K    +L  +         + + +I     ++   F  +        
Sbjct: 492 SKNQNIDKLDDAAKEAGYNL--LSNVTVTANDQLLGSIKNSRPVIRWAFQNN--KGDISE 547

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           +   D  ++   I+ ++P   R LE V   +K +    K  E++   A  L  +      
Sbjct: 548 IFECDDKFVIAAIQGTLPEGYRSLESVTPMLKSELIAQKKGEKI---AQDLSAKNLSSVD 604

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
            +     +   S+   +   R            ++ + S   +     P+       VFK
Sbjct: 605 AYAQAMNSSADSVKFVSFATR--RIAGIGVEPKLNAMVSLAQKDQLSAPVVGNNGVYVFK 662

Query: 576 VTNSKVGPVQEKDKF-ISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           V           +   I  L            I  L ++  V  + 
Sbjct: 663 VYEQNKDAKNYDEAAEIKALDASNAYRFGFQAIQSLVNKADVEDNR 708


>gi|302343059|ref|YP_003807588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
           baarsii DSM 2075]
 gi|301639672|gb|ADK84994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
           baarsii DSM 2075]
          Length = 317

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/389 (14%), Positives = 123/389 (31%), Gaps = 94/389 (24%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           +R   R + A   L+++     +    D       ++ V +V  +K+    F        
Sbjct: 1   MRMNVRPFFALACLLLVSTAAALLVACD---RSGSTAWVAAVDDEKISLHQFNQK----- 52

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
              +  +G   +++   + GL K +LD ++    + +    +G+E     +  E  R   
Sbjct: 53  ---AAFMGLGADAKSLDA-GLRKAVLDEMIQRLVILRQAAKLGVELSDQELDSEEERI-- 106

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
                +      F   +   G++ +++ D   + L     + +                 
Sbjct: 107 ----HHGMDAAAFREGMLARGMDYQDWRDELARDLLVRKTIDLV---------------- 146

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
                            +        + +  +++++KD +  PE                
Sbjct: 147 -----------------LTPRISVDQSEIVAYYDEHKDQFSRPEQI-------------- 175

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
                                         LV P++K ADE    + +G+  +  A+E G
Sbjct: 176 --------------------------LALHLVLPDKKMADELVARMDRGQDMLAAAKEMG 209

Query: 305 KSL-SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            +L SD       + ++P   L  ++F+ A+ G      H  +GY +  V   +P+  + 
Sbjct: 210 VALGSDGRPDWLGRGHMPG-KLEKAVFA-ARPGRPAGPFHSDYGYHVVWVIEKRPAMVLP 267

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
             E    I + +   K         + L+
Sbjct: 268 LAEAAGRIQDALAKEKKDALTVGWLEELK 296


>gi|85858737|ref|YP_460939.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB]
 gi|85721828|gb|ABC76771.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB]
          Length = 322

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 108/354 (30%), Gaps = 70/354 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +       +++     I          +          +L+ ++    +
Sbjct: 27  DRIVAFVNDEIITLHELNTAFEPYRKKIDDSYKG--TDKDRIMSETRLTLLNRMIDNLLI 84

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +Q  +   +      V   I  +        K + D F   LAREG N ++Y       +
Sbjct: 85  EQEAKKSAIAVSDEEVMASIRDN----LARRKTTMDAFQQSLAREGTNFEDYKKEMRDSM 140

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            RT ++                        R V           +    ++  + +++  
Sbjct: 141 VRTRLL-----------------------RREVR----------SKVTVNDEEIGEYYRL 167

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +++ Y   +  ++ +IL                                    E      
Sbjct: 168 HREEYEGKDAVKLKHILLLFPGNMD----------------------------ENAKAKL 199

Query: 280 QKEADEAFQSLKKGKKFIQLAE--EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           Q +A E  + L+ G+ F  LA    QG + SD     F ++      +  + FSL +   
Sbjct: 200 QADAMEILKRLRMGESFDSLAARFSQGPAASDGGNVGFVEKGAMLPEVEKAAFSLDRD-K 258

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            + +I    G+ I  V + +       +EV+ +I +++   K  +K       L
Sbjct: 259 ISDLIESPVGFHIIKVIDRRGPGLKPIEEVRAEIKSRLEDGKIEKKFDSWISEL 312


>gi|223939789|ref|ZP_03631660.1| hypothetical protein Cflav_PD1192 [bacterium Ellin514]
 gi|223891565|gb|EEF58055.1| hypothetical protein Cflav_PD1192 [bacterium Ellin514]
          Length = 561

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 73/524 (13%), Positives = 172/524 (32%), Gaps = 62/524 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS---GSSTVVSVGRQKVPFSSFI 57
           M   IR+  + W+  +   +  + F+I+G +++         SS   ++  + +    FI
Sbjct: 1   MFGTIRRH-QAWLWIVIAALTIISFVIFGPTNSRIGSGLLGNSSQFGTINGKPITQEQFI 59

Query: 58  NSWKQ-ELGMISQKIGFVVNSERARSVGL--DKKILDNLVSGATLDQFIEDIGLEADHGR 114
           N+ ++ +LG       +  +   A  +G   D++    L     +    E+ G+      
Sbjct: 60  NASREVQLGYFISNGRWPSSDPNASRMGYNEDRQTYQRL----FVIAKQEEFGIHPSSQA 115

Query: 115 VWGEIARSPLFHGKDNKFSHDVF-VSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGM 172
           V               K S D F    L     +  ++       L    ++    + G 
Sbjct: 116 VAEMAREM------LGKISLDQFIDQGLKPNNFDANDFQRFLQHELGIQQLLSVAGLSGK 169

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             +            +  S   +  +  +  A      A + +++ ++  +Y  PE  ++
Sbjct: 170 LVTPQEAKDLYIKEHQEISALLVNFSLSNYVAGVTVKPADVQEFYNRHASSYTLPERVQV 229

Query: 233 SYILFDVHEKEKKIEIS----NDELQAEYEKN----KEKYFSPEIRTVEQL--------V 276
           +Y+ F++     + +      + ++++ Y++       +  +PE    +          +
Sbjct: 230 NYVEFNLSNYLSQAQSRMTNIDQDVESVYKQYGTNAYREAKTPEEAKSKIKEEMIRETAL 289

Query: 277 FPNQKEADEAFQSL-----KKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++ A    + L     K    F  LA+ +G  +S     S G   +      S   +
Sbjct: 290 MDARRAAGAFAEELDKLPQKNAAAFADLAKAKGLKVSVTAPFSRGEGPQGMDVPESFTQN 349

Query: 329 IFSLAKK----GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
            F L ++    G        ++   +       PS    F+ +++ ++N  R  +A  + 
Sbjct: 350 AFGLTEQEPFAGPIVAPHSAAY---VIAFKQRFPSEVPPFKSIEEKVSNDYRYYQAFLQA 406

Query: 385 KE-----DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           +          +   LA   S   I+   K+  I LP    + + +   E+         
Sbjct: 407 QASGLAFATNTVPNGLAQNKSFSAIAAEAKVKPIHLPPFSLSTRSL-PSELEEKGIDFTT 465

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
           L +V            +    G Y+          +   L++  
Sbjct: 466 LKKVAFSTPVGKVSQFIPSHQGGYVVYV------EKSLPLDQSR 503


>gi|296879875|ref|ZP_06903848.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
 gi|296429164|gb|EFH15038.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
          Length = 321

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 126/365 (34%), Gaps = 75/365 (20%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV-----GLDKKIL 90
           + S   TV +V   K+    F  +       + Q  G  +  +               IL
Sbjct: 11  NSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYGKDIWDKEVEKGVKYKDKFKDLIL 70

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
           D L++   +    +   L      V               K   + +  +L + GI+++ 
Sbjct: 71  DQLITTEVIYSQAKKDNLLPKKEDVEK---SFKELKDAMGK--DEKYKEQLKKLGIDDEF 125

Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
             D   K L+  +                                     +       S+
Sbjct: 126 LRDQQEKDLAMQNYQS----------------------------------NFTKKTKISD 151

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
             + ++++ +KD ++  E +    +L  V +  K +                        
Sbjct: 152 EEMKKYYDTHKDEFKKDEVEASHILLKTVDDNNKPLSAKEKA------------------ 193

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
                    +K+A+EA + +K G+ F ++A++  +  S      LG FS+  +      D
Sbjct: 194 -------EAKKKAEEALKEVKSGEDFAKVAKKYSQDASASDGGKLGFFSRGQMV-AEFED 245

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           + FS+ KKG+ + ++   +GY I  V++     T SF++ K+ I +Q+   K  E++++ 
Sbjct: 246 AAFSM-KKGEVSDLVETQYGYHIIKVTDRINEQT-SFEDAKETIKDQLLKNKYQEQIEKL 303

Query: 388 YKRLE 392
            K  +
Sbjct: 304 TKEAK 308


>gi|322418543|ref|YP_004197766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320124930|gb|ADW12490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 335

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 117/351 (33%), Gaps = 76/351 (21%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V    +  +    + +  L          +  +  +     +  LD L     L Q    
Sbjct: 49  VNGVAITRAEIERATRVLLSQSGA--PQQLPPDAMQKAS--QAALDQLTMAELLYQEAAK 104

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
           I ++    +V  +IA S   +      + D F   L   G+   E   +  K +      
Sbjct: 105 IEIKDLDQQVEKKIAESKALYP-----NPDAFEEALKGSGLTVAEMTRNARKSIMIN--- 156

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN-Y 224
                                             +   +  + ++A   +++++ ++  +
Sbjct: 157 ------------------------------TFIEKRFASKVEVTDAEAQKFYQENQEKYF 186

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             PE  R S+IL         +++ +               + E +         +++A+
Sbjct: 187 TRPENARASHIL---------VKVDDK-------------LTAEQKQ------QAKEKAE 218

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
              + +K G+ F  +A+ +    S      LG+F +  +       ++F++ K G+ + V
Sbjct: 219 ALLKRVKGGEDFAAVAKTESGCPSATVGGDLGTFGRGQMV-PPFEKAVFAM-KPGEISSV 276

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +   FG+ I  +     +  VS++E K  I   ++  +  ++V      L+
Sbjct: 277 VESQFGFHIIKLVEKHEAGKVSYEEAKTKIFEYLKAERVRKEVTSFVDELK 327


>gi|118579840|ref|YP_901090.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
 gi|118502550|gb|ABK99032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
          Length = 352

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 119/355 (33%), Gaps = 76/355 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + V         K    +++ +    + SE  +    DK  L+ L S   L
Sbjct: 60  KDVVARVNGKPVYARELERVKK---ALLAGRPNQQIPSEHQKEF--DKMALNQLTSAELL 114

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E +  +    +V  +++      GK    + + F   +A  G+NE +  ++  +  
Sbjct: 115 YQAGEKLDTKDIDKQVEAKMS-----QGKARFATTEEFQKAIAGLGMNESDLREYTRRDA 169

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                                    F  +               +    S+    +++++
Sbjct: 170 V---------------------IANFVQQT------------FASKVTVSDEESRKFYDE 196

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            +D ++  E  R S+IL  V  K                        PEIR         
Sbjct: 197 NQDKFKQSESVRASHILIGVDPKAD----------------------PEIRK------KA 228

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +++A++  + L  G  F  LA E      S     LG F +  +       + FSL K+G
Sbjct: 229 REKAEKLRKELAGGADFATLARENSTCPSSQQGGDLGFFPRGQMV-PPFEQAAFSL-KQG 286

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + + V+   FGY I      K + TVS+ + K  I + ++  K +  +       
Sbjct: 287 EVSDVVETQFGYHIIKQMGHKNAETVSYADAKARIVDYLKNQKVNSAITAYLDDA 341


>gi|325105922|ref|YP_004275576.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans
           DSM 12145]
 gi|324974770|gb|ADY53754.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans
           DSM 12145]
          Length = 699

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 88/684 (12%), Positives = 200/684 (29%), Gaps = 122/684 (17%)

Query: 31  SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
           S + F    +S +  V  +K+ +  F     Q       ++G  +N++      + +   
Sbjct: 34  SGSGFIADANSKIGEVDGEKISYQDFNTRVDQNSQQFRAQMG-NLNAQM--QSYIVENTW 90

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSP------LFHGKD-NKFSHDVFVSRLAR 143
           + + S   L++  E +GL      ++  +  +P      +F   +   F+    +S    
Sbjct: 91  NQMTSSIILEKQTEKLGLTVGTAELFDLMFDNPSPQMQQIFADPNTGAFNRANAISSRKS 150

Query: 144 EGINEK--------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ-------------- 181
                            D+     S    + +   G+  ++L                  
Sbjct: 151 ADTEPSGQLKAQWVSLEDNILHERSNQKYLALVRNGVYANSLDAKDDYTNKNKLVNFDYL 210

Query: 182 ----------------------------AKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
                                         +   E R+ +Y+V +       +       
Sbjct: 211 VLDLASIKDADVKLTDADYKEYYEKNKYRFKNQTETRTFEYVVFDASP----SKQDTLEA 266

Query: 214 TQWFEKYKDNYRAPE----YKRISYILFDVHEKEKKIEISNDELQAEYEKNK-------- 261
               +K  + +R  +    Y  I+    +    +KK  +        +  +K        
Sbjct: 267 KAKIDKIAEGFRTTDNDSLYVAINADTKEPIAYQKKGTLEPALDSVMFNASKGYVYGPYI 326

Query: 262 -----------EKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKKGKKFIQLAE 301
                      +   SP+      ++            + +AD     ++KG  F +LA+
Sbjct: 327 ADGAYKVAKLVDSRISPDSVKARHILLNPATEGGMDKAKSKADSIKNLIQKGASFAELAK 386

Query: 302 EQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI--HGSFGYVIAHVSN- 355
           E G      S   LG+F++  +      D++F     G    V      FG  +  +   
Sbjct: 387 EFGTDGSKDSGGDLGTFARGSMV-PKFEDAVF----NGPVGQVFTLETQFGVHVIEIQKQ 441

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I  S  V    V K IA   +  +A+    +  +     +      +E ++++ IV +  
Sbjct: 442 IGSSKVVKVAVVDKQIAPSSQTEQAA---YQKAQAFIAAVKDQKQFEENAQKQGIVKLVA 498

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
             V           +  +     ++   +  D     +    +     + V +    P  
Sbjct: 499 DDV-----TPLQGGLPGLDDARSIVRWAYQADKGDISNEIFTVGSKYVVAV-LTNVKPEG 552

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
              LE+V   ++     +     +  KA++ +        N   + + LG +  +   I 
Sbjct: 553 TLPLEQVKKQIEPSVMHLVKGRMLKEKADKALS----GASNLAQVAQKLGVTTSSVENIV 608

Query: 536 RMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
             +     +  +   +  +F      +    + +   YV    +  +        K    
Sbjct: 609 FANPIIPGYSQENIVVGSIFGSQPNKLSKAIVGDRGVYVYTVKSFIEPAAFTNAAKSKES 668

Query: 594 LTQMMNKDLLDSVIAYLKSQYSVT 617
           L Q M+     +V   LK    + 
Sbjct: 669 LVQTMSSQADGAVFQVLKENAKIK 692


>gi|322417707|ref|YP_004196930.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320124094|gb|ADW11654.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 319

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 62/392 (15%), Positives = 125/392 (31%), Gaps = 84/392 (21%)

Query: 9   SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
           ++  +A   L +L V            +   S     V  + +  +     +      + 
Sbjct: 2   AKIIMACTLLALLAVT------PTFAHAKPISGIAAIVNDEVITSTDVDREY-----ALM 50

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
           QK    + +     +GL    L+ LV    ++Q I ++ ++     V   I        K
Sbjct: 51  QKEAEKLPASE--KMGLKSAALNRLVDKKLVEQKIRELDIKVSDEDVRLAIEDV----KK 104

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
            N  + +     LA +G+   +Y     + L R  ++                       
Sbjct: 105 QNNLTQEALEQALATQGLTFAQYQVQLKEQLERMRLMSQ--------------------- 143

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
                        V +        + +++E ++ +Y   E     +I F V  K    + 
Sbjct: 144 ------------EVRSKIQVGEREMREYYESHRADYGGSETFHARHIFFKVDPKASAEDA 191

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           +  E                            K A E     + G+ F +LA++  +  S
Sbjct: 192 AKAE----------------------------KLAGEVLAKARAGEDFAELAKKYSQDPS 223

Query: 309 ----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG+F +  +    + D++ ++ K GD + ++    G  I  +         SF
Sbjct: 224 AAKDGGDLGTFKRSDML-PEIGDTVAAM-KPGDVSSIVSSPAGLHIIKLEQKSQEKGRSF 281

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           +EVK  I  Q+   K+ E+  +  K L    +
Sbjct: 282 EEVKDSIEEQLYKKKSDERFNQWVKELRNAAS 313


>gi|205375588|ref|ZP_03228375.1| protein secretion (post-translocation chaperonin) [Bacillus
           coahuilensis m4-4]
          Length = 301

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 6/166 (3%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            I+  ++     E +IE++++E+Q  ++ NK  +   E      ++  +++ A+E  Q L
Sbjct: 113 DITLFIYSNKLMEDRIEVTDEEIQEYFDANKASFDQQEQVKASHILVEDEETANEVKQKL 172

Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            +G  F +LA E     S       LG F K  +      ++ F  A+ G  T  +   F
Sbjct: 173 DEGGDFAELAAEYSTDTSNASQGGDLGFFGKGQMV-PEFEEAAFG-AEVGSITGPVQTDF 230

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY I  V   + +   + ++VK+++   ++  K  ++     + L+
Sbjct: 231 GYHIIKVEEKQEAKEATLEDVKEEVRETIKQQKQQQEYPVWIEELK 276



 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 8/148 (5%)

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
             V++ +        +   D   Q++ +    + +E    +++ L  G    E++     
Sbjct: 128 IEVTDEEIQEYFDANKASFDQQEQVKASHILVEDEETANEVKQKLDEGGDFAELAAEYST 187

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
            + +       G   KG+ V   P  E+  F                  D  Y  ++++E
Sbjct: 188 DTSNASQGGDLGFFGKGQMV---PEFEEAAFGAEVGSITGPVQT-----DFGYHIIKVEE 239

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEE 498
              A++  LE+V  +V++  K  K  +E
Sbjct: 240 KQEAKEATLEDVKEEVRETIKQQKQQQE 267


>gi|168187039|ref|ZP_02621674.1| foldase protein PrsA [Clostridium botulinum C str. Eklund]
 gi|169295091|gb|EDS77224.1| foldase protein PrsA [Clostridium botulinum C str. Eklund]
          Length = 348

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 57/406 (14%), Positives = 122/406 (30%), Gaps = 84/406 (20%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW- 60
           ++ IRK     VA + + V  V  +   + +        + V  VG +K+      +++ 
Sbjct: 1   MKNIRK----LVAAVAMCVFSVSAVGCSMIEKTPEAINKTVVAKVGDKKITKGELDSNFG 56

Query: 61  -KQELGMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVW 116
            K+       + G            L +    ++  + +   L Q  E + L      + 
Sbjct: 57  VKRYAEQFKAQYGDNYAENPQVKEQLKQVKLAVVQQMAAQEALKQEAEKLKLVPKEDELK 116

Query: 117 GEI-ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
            E   +      + N  +   F   +   G  ++ + +     +    +           
Sbjct: 117 KEADKKIQEIKKEQNIKTDQDFDKMVKASGFTKEGFENLVKDNVILEKLQN--------- 167

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----RAPEYKR 231
                                     +          + +++E +KD Y    + P    
Sbjct: 168 -------------------------ELTKNVKVDEKEMQKYYETHKDKYPKDPKNPTKVH 202

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +++I+     +E   ++                               + E     + L 
Sbjct: 203 LAHIILQPKSQEDVSKV-------------------------------ESEIKSIKEELN 231

Query: 292 KGKKFIQLAEEQGKSLS---DISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           KG  F  LA++  +  S      LG+        D    DS   L K G  +  +   FG
Sbjct: 232 KGADFSILAKKYSQDGSKDKGGDLGTVPVVNSGFDEQFMDSALPL-KDGQISDPVKTQFG 290

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           Y I  +         +F EVK +I   +   K  + +K  +K++++
Sbjct: 291 YHIIKMIKKDVKPCKTFAEVKNEINKFLLQDKKDKAIKNKFKQIQD 336


>gi|148264947|ref|YP_001231653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
 gi|146398447|gb|ABQ27080.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
          Length = 341

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 121/357 (33%), Gaps = 77/357 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +  V  V    +       + K  +     ++   +  E  +    ++  LD L+S   L
Sbjct: 50  TDPVAKVNDTIITRLDLDRAVKVLVS--QNRLPQPLPPESLKQA--EEAALDQLISAELL 105

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKM 158
            Q  +   +     +V  +++++        KF S D F   L    + EK+  +   K 
Sbjct: 106 YQAGQKTEIRDLEKQVEEKVSQNKA------KFPSADEFEKALKSVEMTEKDLKEFTRKD 159

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +  ++ +                                  +++      + A   ++++
Sbjct: 160 VVISNFIE---------------------------------KNIAEKTKVTEADAKKFYD 186

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
              D ++     + S+IL  V       E                               
Sbjct: 187 DNPDKFKQEPSVKASHILCGVEASATAEE----------------------------KKK 218

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
            +++A+   + +K G+ F  LA+ +    S      LG FSK  +       + F+L K 
Sbjct: 219 AKEKAEALLKKIKAGEDFATLAKSESTCPSSKQGGDLGFFSKGQMV-APFEKAAFAL-KP 276

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           G+ + V+   FGY I  ++  K   T+ F EVK+ I N ++  K  + + E    L+
Sbjct: 277 GEVSDVVETQFGYHIIKLTEKKEGGTIKFDEVKEKIENYLKNLKIQKAIGECLVELK 333


>gi|182420001|ref|ZP_02951235.1| foldase protein PrsA [Clostridium butyricum 5521]
 gi|237669545|ref|ZP_04529525.1| prsA family protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376038|gb|EDT73625.1| foldase protein PrsA [Clostridium butyricum 5521]
 gi|237654989|gb|EEP52549.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 343

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 101/358 (28%), Gaps = 70/358 (19%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLD 100
            +VG +K+  +      K  +  + Q+ G    +       L +   + L+ +V+   + 
Sbjct: 39  ATVGDEKITKADMDEEMKATIDQLKQQYGDDYANNEKIKDQLKQMKVQYLNAMVNEKLML 98

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           +  E +G+      +     +      K            L   G  E  Y D+  K   
Sbjct: 99  KNAESVGVTPTDDELNEYADKQIE-QLKQAYPDDAQLQQVLEANGFTEDSYKDYAKKQYK 157

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
              V                                       A  + ++     ++++ 
Sbjct: 158 LQKVQEAIT----------------------------------ADVEVTDDDAKAYYDEN 183

Query: 221 KD-NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           KD  Y        ++IL      +  I+                               +
Sbjct: 184 KDSQYTVGAGANAAHILIAEKGSDGNIDFD----------------------------AS 215

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             +A+E    L  G  F QLA E G          LG  +           + F    +G
Sbjct: 216 LAKANEVKAKLDAGADFAQLASEYGTDGTKDKGGDLGFVAYNQANYDQDFLAGFKQLSEG 275

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
             +  I   FGY I   + IK      F +VK+ I +Q+   + S+   +     ++ 
Sbjct: 276 QISDPIKSQFGYHIIKATGIKDEVVTPFDDVKEQIKSQLLQQQQSKAFNDKISEWKDA 333


>gi|21673044|ref|NP_661109.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium tepidum
           TLS]
 gi|21646111|gb|AAM71451.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium tepidum
           TLS]
          Length = 700

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 84/640 (13%), Positives = 183/640 (28%), Gaps = 81/640 (12%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVPFSSFINSW 60
           +  +R  +   +    LV  F+  +++         +  + V   V  + +  + +   +
Sbjct: 4   MSKLRDKTH--IVLFVLVAAFLALIVFEWGMNFTGPTRKAGVAGKVNGESISMNEYEALY 61

Query: 61  KQELGMISQKI-GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
              +    Q   G  + S         ++  + +V    L Q ++  G+      V   +
Sbjct: 62  NNIVAGFRQSNPGVEITSGL--DAKFREQAWNYVVDQTLLAQLLKKYGITVTDQEVLDAV 119

Query: 120 ---ARSPL-----FHGK-DNKFSHDVFVSRLAREGINEKEY----IDHYTKMLSRTDVVG 166
                 P      F      K    +     AR     K++     +   + L    +V 
Sbjct: 120 NNPVNPPAIIRQNFTDPRTGKIDRQLLEQ--ARSDPKAKDFWLNAQEAIKRELMVNKLVM 177

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--PSNAVLTQWFEKYKDNY 224
                +  ++  L +  +  F   +  +I     +  A  +    +  +  W++ +K+ +
Sbjct: 178 TLRTMVFVTDPELTEVVQRQFTTFAGSFIPFPYSYAGAETNFPVKDDEIKAWYDSHKEQF 237

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
           R    +   ++ F +                                  Q     +KE D
Sbjct: 238 REEPVRSAEFVFFPLTP------------------------------SRQDSLQVKKEID 267

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK--KGDFTPVI 342
                    K   +  + Q    +  ++     ++ P  +   ++FS  K   G     I
Sbjct: 268 GLIPQFAAAKSDSEFVKIQSDLPNSANVTLSRADFSP--AAGQALFSSPKLVPGQIVGPI 325

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
                Y +  + ++     V+       I         + +     K++ E L  G S  
Sbjct: 326 ADEGYYRLLKIKSVTTGEPVA-SASHILIRLNPADKAEAARAMGLLKKISEELKGGASFA 384

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
            ++ +            F G   K + V       Q    VF       K   +  P  +
Sbjct: 385 SLAAKYSEDPGSARNGGFVGWFTKDRMV------PQFAQAVFA-----GKPGQIVGPVQT 433

Query: 463 YMWVQIKESI--PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
              + I +      R     EV   +K    + +T+E +  +A   + E   +G  F   
Sbjct: 434 QFGLHIIKIEGFDNRRIVCSEVARQIKA---STQTSETIKRQAQAFLTEAKSKG--FEAA 488

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV---- 576
            K     +  T    R          + I+       +      ++    +VV K+    
Sbjct: 489 AKAQRLEVGKTGDFTRQSLLAVPGMGEAITGFAFKAKDSDISDVLDAEKGFVVAKLLTQN 548

Query: 577 -TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
            T       Q K+   + L +      L S +  L     
Sbjct: 549 DTGYHQLDAQLKEMIKTELVREKQGAALKSKLVALSKSSG 588


>gi|210623289|ref|ZP_03293706.1| hypothetical protein CLOHIR_01656 [Clostridium hiranonis DSM 13275]
 gi|210153690|gb|EEA84696.1| hypothetical protein CLOHIR_01656 [Clostridium hiranonis DSM 13275]
          Length = 333

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 123/364 (33%), Gaps = 79/364 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL------DKKILDNL 93
           + TV  V   K+    +    K     +   IG     +     G+       + +LD +
Sbjct: 22  NETVADVNGTKITLGQYEFMLKMNKDSVESNIGGADKWDEKDQTGVSYKDKYKRLVLDQM 81

Query: 94  VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
           ++   L Q  E  GL+     +                                   Y D
Sbjct: 82  INTELLAQNAEKEGLKPTDKEIQ--------------------------------ASYND 109

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAK-RFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             T + S  ++ G           L +QAK     +         +          ++A 
Sbjct: 110 LKTYVNSDENLKGAAEELGINDEFLKEQAKISLLIQK--------SQEKFYKEEKVTDAE 161

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
           + ++++++ D Y+  E +    ++    ++ K +  ++                      
Sbjct: 162 MKKYYDEHIDEYKKDEVEASHILIKTTDDQNKPLPEAD---------------------- 199

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADS 328
                  + +A +  + +K G  F +LA+    + G + +  +LG+F K  +      D+
Sbjct: 200 ---QKKAKAKAKKVLKEVKAGGDFAELAKKYSQDPGSAANGGALGAFGKGMMV-QEFEDA 255

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
            F + + G+ + ++   FGY I  V++     T SF+E K  I  ++   K  EK+    
Sbjct: 256 AFGM-EPGEVSDLVKTDFGYHIIKVTDRIK-ETTSFEEAKAGIKEEILKNKYGEKIAALQ 313

Query: 389 KRLE 392
           K+ +
Sbjct: 314 KKAK 317


>gi|307721593|ref|YP_003892733.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979686|gb|ADN09721.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 276

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 12/190 (6%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++YK  Y+  E +    +   V +K+    I+ISN EL+  Y KNKE++   E      +
Sbjct: 86  KEYKSEYKKLEQRMKKELAIQVWQKKLLDSIKISNKELKDYYNKNKEEFNEKESVHARHI 145

Query: 276 VFPNQKEADEAFQSLKK------GKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLA 326
           +   + EA +    LK        +KFI+LA+++    S      LG FSK  +   +  
Sbjct: 146 LVKAEDEAKKIIAQLKSLSGEKLKEKFIELAKKESTGPSGPKGGDLGYFSKGQMV-PAFN 204

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           D +FS+ K       +   FGY + +V + KPS T SF EVK  I  ++++ K    +K+
Sbjct: 205 DKVFSMKKGEVTLKPVKTQFGYHVIYVEDKKPSMTRSFDEVKAFIEQRLKMEKFKAVMKK 264

Query: 387 DYKRLEEFLA 396
               L++  A
Sbjct: 265 KMDALQKKAA 274



 Score = 37.3 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 6/144 (4%)

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
           K+ +  +  + KA ++ K+   +L+     G  + E            P     G     
Sbjct: 137 KESVHARHILVKAEDEAKKIIAQLKSL--SGEKLKEKFIELAKKESTGPSGPKGGDLGYF 194

Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
            +   +P     +F +   +  L    T       Y  + +++  P+  R  +EV   ++
Sbjct: 195 SKGQMVPAFNDKVFSMKKGEVTLKPVKTQF----GYHVIYVEDKKPSMTRSFDEVKAFIE 250

Query: 488 KDWKTVKTAEEVSSKANQLVLEYS 511
           +  K  K    +  K + L  + +
Sbjct: 251 QRLKMEKFKAVMKKKMDALQKKAA 274


>gi|310825131|ref|YP_003957489.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
 gi|309398203|gb|ADO75662.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
          Length = 330

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 99/360 (27%), Gaps = 89/360 (24%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
             ++ V  V  + +  + F     +EL       G     E        + +LD L+   
Sbjct: 30  PDANVVAMVNGEVLGRAEFEQELWRELSSAE---GPERTPEEVEPF--KRALLDTLIKRM 84

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
            L Q  +   L      V   + R          +  + F   LA+  ++  E       
Sbjct: 85  LLLQQAKQYNLTVTPDEVDRRMLRL------SGDYPAENFSEVLAQGQMSLAELRAREAN 138

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            L    +                                    HV A    +   L   +
Sbjct: 139 RLIIEKLF---------------------------------TNHVYARVAVTEEELRAAY 165

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
             ++  ++ PE                                             QLV 
Sbjct: 166 TAHEAEFQEPEQV----------------------------------------HAAQLVV 185

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAK 334
               EA      LK GKKF  LA     S        LG F +  +P     + +F+L +
Sbjct: 186 KGLDEARRVQAQLKAGKKFADLARRYSLSADAKVGGDLGFFPRGQMP-PVFDEVVFNL-R 243

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G  + V+   +GY +  V   KP+    F EV+  +  +    K  E  +   K L + 
Sbjct: 244 PGQVSDVVSTEYGYHLFRVLEFKPARKRDFVEVRAKVEAREVKRKQEEAHEAFEKALLDK 303



 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 10/169 (5%)

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
            +  Y    V+  +     +  E +     Q+   +   K  ++ +R++  L  G    +
Sbjct: 147 TNHVYARVAVTEEELRAAYTAHEAEFQEPEQVHAAQLVVKGLDEARRVQAQLKAGKKFAD 206

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
           ++RR  + + D  +    G   +G+     P  ++++F +        +   V   +  Y
Sbjct: 207 LARRYSLSA-DAKVGGDLGFFPRGQ---MPPVFDEVVFNL-----RPGQVSDVVSTEYGY 257

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
              ++ E  PAR R   EV   V+      K  EE      + +L+ +K
Sbjct: 258 HLFRVLEFKPARKRDFVEVRAKVEAREVKRK-QEEAHEAFEKALLDKAK 305


>gi|253698853|ref|YP_003020042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
 gi|251773703|gb|ACT16284.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
          Length = 317

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 107/361 (29%), Gaps = 78/361 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S     V  + +        +        Q          +   GL    L+ LV    +
Sbjct: 27  SGIAAIVNDEIITTLELDKEY-------LQIQKEADKVPASDKSGLRGAALNRLVERKLI 79

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +Q I ++ +      V   I        K N  + +     LA +G+   +Y     + L
Sbjct: 80  EQKIRELNINVSDEEVRLAIEDV----KKQNNLTQENLEQALATQGMTFAQYRIQLKEQL 135

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  ++                                    V +        + ++++ 
Sbjct: 136 ERLRLMSQ---------------------------------EVRSKVQVGEREMREYYQA 162

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
               Y   E     +I F V +K    E+S  E +                         
Sbjct: 163 NIAAYGGSEVFSARHIFFKVDKKGGAGELSKAEAR------------------------- 197

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKK 335
              A+E     + G+ F  LA++             LG+F K  +    + D++ ++ + 
Sbjct: 198 ---ANEVLAKARAGEDFAALAKQYSDDPAAAKDGGDLGTFKKADML-PEIGDTVAAM-QP 252

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G+ + V+    G  I  +   K      F+EVK  I + +   K+ E+  +  K L    
Sbjct: 253 GEVSSVVRSPSGLHIIKLEGKKQDAGRPFEEVKDSIEDTLYKKKSDERFAQWVKELRASA 312

Query: 396 A 396
           A
Sbjct: 313 A 313


>gi|46397002|sp|Q97E99|PRSA_CLOAB RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|325510620|gb|ADZ22256.1| peptidylprolyl isomerase [Clostridium acetobutylicum EA 2018]
          Length = 333

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/395 (12%), Positives = 110/395 (27%), Gaps = 85/395 (21%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-GRQKVPFSSFINSWKQELG 65
           K+++     + + +     +   + +       S  V ++ G Q +         K  + 
Sbjct: 2   KSAKQIATALLVGMFTFSAVGCSMVEKRPEAINSKVVATIYGNQTITRGEIDKLAKGTVE 61

Query: 66  MISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
            +  + G            L K+   IL +L+      +  +D  +      +   +   
Sbjct: 62  QLKSQYGDSYEKNEEAVAALKKQKEQILTSLIDQKIFLKKAKDQKITLTKDEIKTNVDDV 121

Query: 123 -PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
              +  +    S   F S+L++ G    E+ D          ++   V            
Sbjct: 122 YAQYQQEFKTESE--FKSQLSQYGYTVAEFKDQLKNRAISNKLIQQVV------------ 167

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                                      S+    ++++ +K++Y                 
Sbjct: 168 ----------------------KDVKVSDDEAKKYYDSHKNSYT---------------- 189

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
                                   SP    +  ++   +KEA      + KG+ F  +A+
Sbjct: 190 -----------------------QSPNTVHLAHILVKTEKEAKAVKARIDKGEDFATVAK 226

Query: 302 EQGKSLS---DISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +     S      LG   + +   D +   +   L      +  +H  FG+ +       
Sbjct: 227 QVSTDGSKEKGGDLGDIQENDSNYDKTFMAAALKL-NDNQVSAPVHTQFGWHVIKCIKKT 285

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                 F  VK DI   +  TK     ++  K+ E
Sbjct: 286 EYPVKDFNSVKDDIKQTVLSTKQKSVYQKTLKKWE 320


>gi|148381478|ref|YP_001256019.1| foldase protein PrsA [Clostridium botulinum A str. ATCC 3502]
 gi|153933333|ref|YP_001385853.1| peptidylprolyl isomerase [Clostridium botulinum A str. ATCC 19397]
 gi|153935960|ref|YP_001389260.1| peptidylprolyl isomerase [Clostridium botulinum A str. Hall]
 gi|226712001|sp|A7FPK5|PRSA_CLOB1 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|226712002|sp|A5I7R3|PRSA_CLOBH RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|148290962|emb|CAL85098.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           A str. ATCC 3502]
 gi|152929377|gb|ABS34877.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           A str. ATCC 19397]
 gi|152931874|gb|ABS37373.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           A str. Hall]
          Length = 336

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/395 (14%), Positives = 121/395 (30%), Gaps = 86/395 (21%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQEL 64
           K+++  ++ + L +  + F    + +        ST+  V  +K+       S   +Q L
Sbjct: 2   KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQVL 61

Query: 65  GMISQKIGFVVN-SERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
             I  + G     SE+ +       K+IL+NL++   L Q  +++ +      +  E  +
Sbjct: 62  SQIKTQYGEEFEKSEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEADK 121

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
                          F   L   G  ++   ++    +    V+                
Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLRDQIVIEKVIN--------------- 166

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA-PEYKRISYILFDVH 240
                               V       +    +++ + +  +   P    +S+IL    
Sbjct: 167 -------------------EVTKDVKVEDKDAQKYYNENQSMFTEKPNTMNVSHIL---- 203

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                                                  + EA +  + L   + F ++A
Sbjct: 204 ------------------------------------VKTEDEAKKVKKRLDAKEDFAKVA 227

Query: 301 EEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +E  +       G         +   D +   +  +L K+G  +  +H  +GY I  V++
Sbjct: 228 KEVSQDPGSKDKGGLLGDISYSDSNYDPTFMKAAIAL-KEGTISNPVHTQWGYHIIKVNS 286

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            K      F  VK+DI  Q++  K  E   +  + 
Sbjct: 287 KKEYPVKKFDSVKEDIKKQLKQEKQQEAYTKKIEE 321


>gi|188590380|ref|YP_001919599.1| peptidylprolyl isomerase [Clostridium botulinum E3 str. Alaska E43]
 gi|188500661|gb|ACD53797.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 343

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/406 (12%), Positives = 126/406 (31%), Gaps = 100/406 (24%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
              +  VA + +  L    +   + +       ++ + +VG++K+         K     
Sbjct: 2   NKIKKIVASVVVATLAFSIVGCKMIEKTPEAIKNTVLATVGKEKITQGDLDRDLKSITES 61

Query: 67  ISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
           + QK G    S       L +   + L+ +V+   +     ++ L      +  ++  + 
Sbjct: 62  LKQKYGENYESNADIKDQLKELKTQYLNAIVNEKVILAKSAELNLRPSDEELNKDVDEAV 121

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
            ++    +   + + + L + G  E E+ ++                             
Sbjct: 122 SYYKTAYQT-EEQYNTFLEQNGFTEDEFKEYQKNQ----------------------AIV 158

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
           R+ ++             +    + ++  + +++++ KD                     
Sbjct: 159 RYVYQ------------DMVKDVEVNDEDIQKYYDENKD--------------------- 185

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
                              ++ +P     ++ +    ++A+E    L  G  F ++A+E+
Sbjct: 186 ------------------TQFSTPGEIDFDKSL----QQANEIKSQLDGGADFAEVAKEK 223

Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-- 357
            +         SLG         V      F   K+G+ +  I   FGY I  V+ +K  
Sbjct: 224 SQDPGTKGNGGSLGFIEYSSTKYVKEFMDGFKDLKEGEISQPIKSQFGYHIIKVTGVKDD 283

Query: 358 -------------PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
                               ++VK+DI  Q+   K S+   E  + 
Sbjct: 284 GADVAHILVADKGEGTVTPLEDVKEDIRGQLLQKKQSDVFNEKIEE 329


>gi|187932868|ref|YP_001884407.1| peptidylprolyl isomerase [Clostridium botulinum B str. Eklund 17B]
 gi|187721021|gb|ACD22242.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           B str. Eklund 17B]
          Length = 343

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/406 (13%), Positives = 126/406 (31%), Gaps = 100/406 (24%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
              +  VA + +  L    +   + +       ++ + +VG++K+         K     
Sbjct: 2   NKIKKIVASVVVATLAFSIVGCKMIEKTPESIKNTVLATVGKEKITQGDLDRDLKSITES 61

Query: 67  ISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
           + QK G    S       L +   + L+ +V+   +     ++ L      +  E+  + 
Sbjct: 62  LKQKYGENYESNADIKDQLKELKTQYLNAIVNEKVILAKSTELNLRPSDEELNKEVDEAV 121

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
            ++    +   + + + L + G  E E+ ++                             
Sbjct: 122 NYYKTAYQT-EEQYNAFLEQNGFTEDEFKEYQKNQAV----------------------- 157

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
                   V Y+    + +    + ++  + +++++ K+                     
Sbjct: 158 --------VRYVY---QDMVKDVEVNDDDIQKYYDENKE--------------------- 185

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
                              ++ +P     ++ +    ++A+E    L  G  F ++A+E+
Sbjct: 186 ------------------TQFSTPGEIDFDKSL----QQANEIKSQLDGGADFSEVAKEK 223

Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-- 357
            +         SLG         V      F   K+G+ +  I   FGY I  V+ +K  
Sbjct: 224 SQDPGTKDNGGSLGFIEYSSTKYVKEFMDGFKDLKEGEISQPIKSQFGYHIIKVTGVKDD 283

Query: 358 -------------PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
                               ++VK+DI  Q+   K S+   E  + 
Sbjct: 284 GAEVAHILVADKGEGTVTPLEDVKEDIRGQLLQKKQSDVFNEKIEE 329


>gi|197116616|ref|YP_002137043.1| PpiC-type peptidylprolyl cis-trans isomerase [Geobacter
           bemidjiensis Bem]
 gi|197085976|gb|ACH37247.1| peptidylprolyl cis-trans isomerase, PpiC-type, SurA family
           [Geobacter bemidjiensis Bem]
          Length = 317

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 106/356 (29%), Gaps = 78/356 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S     V  + +        + Q      +  G           GL    L+ LV    +
Sbjct: 27  SGIAAIVNDEIITTQELDKEYLQIQKDADKVPGS-------DKSGLRGAALNRLVERKLI 79

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +Q I ++ +      V   I        K N  + +     L  +G+   +Y     + +
Sbjct: 80  EQKIRELNINVSDEEVRLAIEDV----KKQNNLTQENLEQALVTQGLTLAQYRTQLKEQM 135

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  ++                                    V +        + ++++ 
Sbjct: 136 ERLRLMSQ---------------------------------EVRSKVQVGEREMREYYQA 162

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
               Y   E     +I F V +K    E+S  E +                         
Sbjct: 163 NIAAYGGSEVYSARHIFFKVDKKGGAGELSKAETR------------------------- 197

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKK 335
              A+E     + G+ F  LA++             LG+F K  +    + D++ ++ K 
Sbjct: 198 ---ANEVLAKARAGEDFAALAKKYSDDPAAAKDGGDLGTFKKADML-PEIGDTVSAM-KP 252

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G+ + ++    G  I  +   K      F++VK  I + +   K+ E+  +  K L
Sbjct: 253 GEVSSIVRSPAGLHIIKLEGKKQDAGRPFEQVKDSIEDTLYKKKSDERFAQWVKEL 308


>gi|294498814|ref|YP_003562514.1| foldase protein PrsA [Bacillus megaterium QM B1551]
 gi|294348751|gb|ADE69080.1| foldase protein PrsA [Bacillus megaterium QM B1551]
          Length = 291

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 87/232 (37%), Gaps = 22/232 (9%)

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----------------RAPEYKRISYI 235
           ++  V++          ++  +    E  K  Y                 +   K +   
Sbjct: 62  IEQKVISKEAAKQNIKVTDKEINAELENLKSQYGGEDALNQALASSGVKLSELKKDLKTN 121

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           +      E  I I + E+++ + +NK+   +        ++  ++K A E    L KG+ 
Sbjct: 122 IEAKKMVESTINIKDSEMKSYFNQNKDSLATEAQVKASHILVADEKTAKEVKAKLDKGED 181

Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F +LA+E         +   LG F K  + + + A+  FS+ K  + +  +   +GY I 
Sbjct: 182 FAKLAKEYSTDTASKSNGGDLGYFKKGDMVE-AFANKAFSM-KVNEVSDPVKTEYGYHII 239

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
            V+  K +   +++  K  I   +   K   +     ++L++   +   +D 
Sbjct: 240 KVTGKKEAQKATYENSKAKIKQTLLDQKYQTEYPTWLQKLKKKYDITNKLDS 291


>gi|222056577|ref|YP_002538939.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
 gi|221565866|gb|ACM21838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
          Length = 340

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 137/367 (37%), Gaps = 77/367 (20%)

Query: 30  LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
           + + +  VS S  V  +    +       + K  +     ++   +  E+ +    ++  
Sbjct: 39  VKETVKKVSPSDPVAKINGTIITRKELDRAVKVLVA--QNRLPQALPPEQQKQA--EEAA 94

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINE 148
           LD L+S   + Q  +   ++    ++  +IA +        KF + + F   L    ++E
Sbjct: 95  LDQLISAELMYQAGQKTEIKDIDKQIEEKIALNRA------KFPNPEEFDKALKSVEMSE 148

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
           K+  +   K +  T  +                                  +++ +  + 
Sbjct: 149 KDLKEFTRKDIVITAFIE---------------------------------KNIISNINV 175

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           + A   ++++   + ++  E  R S+IL  V  K               E++K+K     
Sbjct: 176 AEADAKKFYDDNTEKFKQDESIRASHILIGVDAKAG-------------EEDKKK----- 217

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
                      +++A+   + +K G+ F  LA+ +    S      LG+F K  +     
Sbjct: 218 ----------AREKAEGILKKIKAGEDFATLAKAESTCPSSKQGGDLGTFPKGQMV-APF 266

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            ++ F+L K G+ + V+   FGY I  ++  K +  V F EVK  I + ++  K  + V 
Sbjct: 267 ENAAFAL-KPGEVSDVVETQFGYHIIKLAEKKEAGMVKFDEVKTKIVDYLKSQKIQKGVG 325

Query: 386 EDYKRLE 392
           +  + L+
Sbjct: 326 DYLEELK 332


>gi|212640109|ref|YP_002316629.1| Parvulin-like peptidyl-prolyl isomerase (molecular chaperone)
           [Anoxybacillus flavithermus WK1]
 gi|212561589|gb|ACJ34644.1| Parvulin-like peptidyl-prolyl isomerase (molecular chaperone)
           [Anoxybacillus flavithermus WK1]
          Length = 288

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 83/207 (40%), Gaps = 27/207 (13%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEIS 249
           +      ++  L +  E  K+ Y                   +   L       + I+++
Sbjct: 72  LSKKFKVTDEELNKEIENLKEMYGIQYDLAVQQNGEEAIRDMVKLDLLRQKAAMEDIKVT 131

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS- 308
           ++EL+  Y + K K           ++  ++K A +    L+KG+ F +LA+E  K    
Sbjct: 132 DEELKKYYNEYKPK------VKASHILVDDEKTAKDIKAKLEKGEDFAKLAKEYSKDTGS 185

Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 LG F    + +     + ++L   G+ +  +   FGY I  V++ +     SF 
Sbjct: 186 AQNGGDLGWFGPGKMVE-EFEKAAYAL-NVGEISDPVKTQFGYHIIKVTDKE--KKKSFD 241

Query: 366 EVKKDIANQMRITKA-SEKVKEDYKRL 391
           E+K++I  +++ +K  + KV+     L
Sbjct: 242 EMKEEIEFEVKKSKLDTSKVQSKLDEL 268


>gi|295704136|ref|YP_003597211.1| foldase protein PrsA [Bacillus megaterium DSM 319]
 gi|294801795|gb|ADF38861.1| foldase protein PrsA [Bacillus megaterium DSM 319]
          Length = 291

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 88/232 (37%), Gaps = 22/232 (9%)

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----------------RAPEYKRISYI 235
           ++  V++          ++  +    E  K  Y                 +   K +   
Sbjct: 62  IEQKVISKEAAKQNIKVTDKEINAELENLKSQYGGEDALNQALASSGVKLSELKKDLKTN 121

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           +      E  I I + E+++ +++NK+   +        ++  ++K A E    L KG+ 
Sbjct: 122 IEAKKMVESTINIKDSEMKSYFDQNKDSLATEAQVKASHILVADEKTAKEVKAKLDKGED 181

Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F +LA+E         +   LG F K  + + + A+  FS+ K  + +  +   +GY I 
Sbjct: 182 FAKLAKEYSTDTASKSNGGDLGYFKKGDMVE-AFANQAFSM-KVNEVSDPVKTEYGYHII 239

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
            V+  K +   +++  K  I   +   K   +     ++L++   +   +D 
Sbjct: 240 KVTGKKEAQKATYENSKAKIKQTLLDQKYQTEYPTWLQKLKKKYDITNKLDS 291


>gi|189423767|ref|YP_001950944.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
 gi|189420026|gb|ACD94424.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
          Length = 355

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 112/356 (31%), Gaps = 74/356 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +     V    + F   +    Q +   +QK G V ++ R     L   +LD L+     
Sbjct: 55  NGVAAIVNDDIITFREVLRE-SQAVIQDAQKKGLVDDTAR---HNLRVMVLDRLIEKLLT 110

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +Q I+++G++     +   I        ++N  +     + L  +G    +Y     + L
Sbjct: 111 EQKIKELGIKIGDDEIRQAIDDV---KRQNNNMTQSQLEAALKSQGYTFAQYEVQLREQL 167

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  +V M                                  V +    S     ++++ 
Sbjct: 168 ERLRLVSM---------------------------------EVRSKIYVSEKEAEEYYQS 194

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +  +Y   E  + S+I   V EK    +I                               
Sbjct: 195 HLSSYAEEETFKASHIFIKVDEKAPADQIQQAM--------------------------- 227

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKK 335
             +A +     ++GK F QLA E            SLG+F +  +    L  +I  L K 
Sbjct: 228 -NKALKVLFEARQGKDFAQLAREYSDDAAAKKDGGSLGTFKRGEML-ADLEKAILPL-KP 284

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G+   ++    G  I  +          F+ VK DI++ +   K   +     K L
Sbjct: 285 GEVGELVSTPSGLHIVKLDERSSGKVKPFETVKADISDLLYRQKQDSRFTSWMKEL 340


>gi|86143854|ref|ZP_01062222.1| peptidyl-prolyl cis-trans isomerase [Leeuwenhoekiella blandensis
           MED217]
 gi|85829561|gb|EAQ48024.1| peptidyl-prolyl cis-trans isomerase [Leeuwenhoekiella blandensis
           MED217]
          Length = 707

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 102/729 (13%), Positives = 205/729 (28%), Gaps = 145/729 (19%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           L  IR+  R+      + +    F++  +  +    +      + SV    +    F   
Sbjct: 4   LNKIRQ--RSVFLIAIIALALFAFVLADVFKNGGFSTEKSQRVLGSVNDTDIEQQEFAQL 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV---- 115
             Q+        G  + + +A +   ++++     S   LD+  E++G+  +  R+    
Sbjct: 62  VDQQTARY----GNNITNTQAVNAAWEQEV-----SRIILDEQYEELGISIEQDRINDLL 112

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE-------YIDHYTKMLSRTDVVGMF 168
              +   P F  ++  FS       +A       +       Y     K   R     + 
Sbjct: 113 KEALQTDPNFQNENGVFSEQKLKEYIATLKSTNPQMYQQWVAYEQQLAKNEQRQIYFSLI 172

Query: 169 VGGMRPS--------------------------------NLLLDQAKRFYFEN------- 189
             G+  S                                ++  ++   +  E+       
Sbjct: 173 KAGLNTSFKEGQMAFEMENNLRDLEYVQVPYTSIPDEEVSVSKEEITAYIKEHSNEFQTE 232

Query: 190 --RSVDYIVLNNRHVPAIADPSNAVLTQWFEK---------------------YKDNY-- 224
             R++ Y+  N        +     LTQ  EK                       +++  
Sbjct: 233 AARNIRYVKFNEDPTLKDEEAVKESLTQLLEKRVEYTAATKTNDTVAGLATTTNPEDFVN 292

Query: 225 -RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY-----------FSPEIRTV 272
             + E    +Y+  +        E+   +  A Y   K+               P+    
Sbjct: 293 EYSDERYTDAYLFKNELPSAAADELWALDEGAVYGPYKDGETFKISKVVAVTQIPDSVQS 352

Query: 273 EQLVFP------------NQKEADEAFQSLK-----KGKKFIQLAEEQGKSLS---DISL 312
             ++               + EA     SL         K   LA E     S      L
Sbjct: 353 SHILLTYQGLANAGAQTRTKAEAKALADSLAGVIKAAPSKLADLAPEFSADGSKEKGGDL 412

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF-TVSFQEVKKDI 371
           G  +K         D IF   K GD   V+   FGY +  +++ K     +    V K +
Sbjct: 413 GYATKGRFVKP-FNDFIFD-GKTGDV-GVVESRFGYHVIRITDQKNVQRAIKLATVTKAV 469

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
                    +    E  K            D+I++        +  ++   + + G+   
Sbjct: 470 EPS--QETINNVFNETTKFQMAVTEDKNGFDDIAKEGGYNVRPVNNINALDETLPGQG-- 525

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
               + +++   F  ++  + D      +G Y+ VQ+ +         +E    V    +
Sbjct: 526 ---SQREIIRWAF-DEERKTGDVERFNVEGGYLVVQVTKKTEKGLLPADEASPRVTPVLR 581

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--I 549
             K AE++              G +   I      ++ T+  +N  +      G +   +
Sbjct: 582 NQKKAEQIKKNI---------SGSDLSAIASANNTTVQTSPGVNLKNPTLAGSGTEPKVV 632

Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKFISYLTQMMNKDLLDSVIA 608
            + F      V   PIE      V KVT       +     F           +   +I 
Sbjct: 633 GKAFGLEEGEV-SEPIEGNRGVYVVKVTKITPARELDNYASFAVQKQNADRATVNMRIIQ 691

Query: 609 YLKSQYSVT 617
            LK    + 
Sbjct: 692 ALKDAAEIE 700



 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 11/130 (8%)

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIFS 331
           V  NQK+A++  +++  G     +A     ++      +     +     +  +    F 
Sbjct: 579 VLRNQKKAEQIKKNI-SGSDLSAIASANNTTVQTSPGVNLKNPTLAGSGTEPKVVGKAFG 637

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFT----VSFQEVKKDIANQMRITKASEKVKED 387
           L ++G+ +  I G+ G  +  V+ I P+       SF  V+K  A++  +     +  +D
Sbjct: 638 L-EEGEVSEPIEGNRGVYVVKVTKITPARELDNYASFA-VQKQNADRATVNMRIIQALKD 695

Query: 388 YKRLEEFLAL 397
              +E+  + 
Sbjct: 696 AAEIEDRRSN 705


>gi|251778310|ref|ZP_04821230.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082625|gb|EES48515.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 343

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/406 (12%), Positives = 125/406 (30%), Gaps = 100/406 (24%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
              +  VA + +  L    +   + +       ++ + +VG++K+         K     
Sbjct: 2   NKIKKIVASVVVATLAFSIVGCKMIEKTPEAIKNTVLATVGKEKITQGDLDRDLKSITES 61

Query: 67  ISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
           + QK G    S       L +   + L+ +V+   +     ++ L      +  ++  + 
Sbjct: 62  LKQKYGENYESNADIKDQLKELKTQYLNAIVNEKVILAKSAELNLRPSDEELNKDVDEAV 121

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
            ++    +   + + + L + G  E E+ ++                             
Sbjct: 122 SYYKTAYQT-EEQYNTFLEQNGFTEDEFKEYQKNQ----------------------AIV 158

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
           R+ ++             +    + ++  + +++++ KD                     
Sbjct: 159 RYVYQ------------DMVKDVEVNDEDIQKYYDENKD--------------------- 185

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
                              ++ +P     ++ +    ++A+E    L  G  F ++A+E+
Sbjct: 186 ------------------TQFSTPGEIDFDKSL----QQANEIKSQLDGGADFAEVAKEK 223

Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-- 357
            +         SLG         V      F   K+G+ +  I   FGY I  V+ +K  
Sbjct: 224 SQDPGTKGNGGSLGFIEYSSTKYVKEFMDGFKDLKEGEISQPIKSQFGYHIIKVTGVKDE 283

Query: 358 -------------PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
                               ++VK+DI  Q+   K S+      + 
Sbjct: 284 GADVAHILVADKGEGTVTPLEDVKEDIRGQLLQKKQSDVFNGKIEE 329


>gi|330721963|gb|EGG99901.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC2047]
          Length = 154

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 65/153 (42%), Gaps = 1/153 (0%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++ I+  S+  +AKI + ++ + F ++G+   + +  GSS    V   ++     + +  
Sbjct: 3   IQSIKDNSQGMIAKIIVGLIVLTFALFGVDAIVGNSGGSSKAAVVNGDEISEFELLRAAD 62

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                + Q++G   + +      +  + L+ L+    L Q  ++  +   +GRV   I +
Sbjct: 63  FFKRRMLQEMGANADPDLIDDQLVRARALEELIQRQLLLQAADEQAIFVANGRVDQAILQ 122

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
           +  F   +  F  +++   L    +   +Y  H
Sbjct: 123 NESFQ-TNGVFDRNIYEYTLRNLQMTPVDYKAH 154


>gi|114778682|ref|ZP_01453494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551044|gb|EAU53606.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mariprofundus
           ferrooxydans PV-1]
          Length = 570

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 54/402 (13%), Positives = 121/402 (30%), Gaps = 67/402 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S    V  + +  S      +  L  + Q  G         +  L+++ LD L+     
Sbjct: 23  DSIAAVVNNEAITCSQVDQDAQIMLTQLHQS-GSTFIPA---ASELNQRSLDGLIVKTLQ 78

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q    + L+     +   I          N  + D   + + ++G++  EY  +  + +
Sbjct: 79  KQEARKLELKVSDEELDDAIKNVAA----SNNLTPDQLKAAVEQQGMHYDEYRSNLREQI 134

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFE----NRSVD----YIVLNNRHVPAIADPSN 210
            +  +V       ++ S   + +  R Y E     R V     ++ L +   P     + 
Sbjct: 135 LKNKLVNVAVRSKIQVSEEAVQEYYRKYLEHPKPRREVKLAQLFLSLPSEPTPEQLAVTR 194

Query: 211 AVLT----------------QWFEKYKDN--------YRA--PEYKRISYILFDVHEKEK 244
             +                   + +  D         +       +  S +   V +   
Sbjct: 195 QKIRNIHQQLLAGKDFAQMVAIYSESPDRQQQGVMGWFMQGGVAQRFASALEMPVGQISD 254

Query: 245 KIEISN-----DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL--------- 290
            I   +       L   ++  +    S +      ++      AD A ++          
Sbjct: 255 PIRSPSGFHILKVLAERWKDPQNTGVSYDEVHARHILLKVPSYADAATKAKIRQRAEAIS 314

Query: 291 -----KKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
                    +F   A+E  +  S      LG F K  +   +   + F++ K G+ +  +
Sbjct: 315 HDLQGASDAQFAVRAKEDSQGPSAERGGDLGWFKKGAMV-PAFEKAAFAM-KPGETSGPV 372

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
              FG+ I  +   +     S Q  +  I   +   +  E++
Sbjct: 373 ESPFGFHIIRIVARRHIDPNSLQAHRDQIQQILTNVETQEQL 414


>gi|168183618|ref|ZP_02618282.1| foldase protein PrsA [Clostridium botulinum Bf]
 gi|237796999|ref|YP_002864551.1| peptidylprolyl isomerase [Clostridium botulinum Ba4 str. 657]
 gi|259534738|sp|C3KW94|PRSA_CLOB6 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|182673144|gb|EDT85105.1| foldase protein PrsA [Clostridium botulinum Bf]
 gi|229260856|gb|ACQ51889.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           Ba4 str. 657]
          Length = 336

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 49/394 (12%), Positives = 117/394 (29%), Gaps = 84/394 (21%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN--SWKQEL 64
           K+++  ++ + L +  + F    + +        ST+  V  +K+          +KQ +
Sbjct: 2   KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDENPRFKQVV 61

Query: 65  GMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
             +  + G            + ++   ILD L++   L Q  +++ +      +  E  +
Sbjct: 62  SQMKMQYGEEFEKSEQGKEVIKEQKSQILDELITEKILLQKGKELKVIPKDEELNKEADK 121

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
                          F   L   G  ++   ++    +    V+                
Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVIN--------------- 166

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                                       +    +++ + +  +                E
Sbjct: 167 -------------------EATKDVKVEDKDAQKYYNENQSMFT---------------E 192

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
           K   + +S                         ++   + EA +  + L   + F ++A+
Sbjct: 193 KPNTMNVS------------------------HILVKTEDEAKKVKKRLDAKEDFAKVAK 228

Query: 302 EQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           E  +       G         +   D +   +  +L K+G  +  +H  FGY I  +++ 
Sbjct: 229 EVSQDTGSKDKGGLLGDINYNDANFDPTFMKAAMAL-KEGAISNPVHTQFGYHIIKINSK 287

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           K      F  VK+DI  Q++  K  E   +  + 
Sbjct: 288 KEYPVKKFDAVKEDIKKQLKQEKQQEAYTKKIEE 321


>gi|206900652|ref|YP_002251221.1| foldase protein PrsA [Dictyoglomus thermophilum H-6-12]
 gi|206739755|gb|ACI18813.1| foldase protein PrsA [Dictyoglomus thermophilum H-6-12]
          Length = 355

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/391 (10%), Positives = 114/391 (29%), Gaps = 91/391 (23%)

Query: 9   SRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
            +  + KI  +V    F++ G     ++    +  V+ +    V    + +         
Sbjct: 2   KKHSIFKILFIVFVAIFILGGAFVALVYHQMKNYPVLKINGMPVSRQEYKDRLNFIKTQY 61

Query: 68  SQKIGFVVNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS-PL 124
           S   G    + + + +   + ++ + ++     +    +  G+      V   +      
Sbjct: 62  SIMFGVDFTTTQGQKMLSQVKEETIKDIARWKIVQAETKKRGISVSEKEVETRLKEIEKE 121

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F           F   L++ G +   + +   K L    ++                   
Sbjct: 122 FPSVL------QFEITLSQYGYDRNTFKEELRKNLLMRKLM------------------- 156

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
                            +      +   + +++ +    +  P+  ++            
Sbjct: 157 ---------------DEIGKDEKVTEDEIKKYYNENIKLFEHPKEYKVYS---------- 191

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303
                                         +   ++K+A E +  L   K  F   A++ 
Sbjct: 192 ------------------------------IFIKDEKKAKEVYNELLSNKITFTDAAKKY 221

Query: 304 GKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            +      S   LG  ++  +P+  +    F+L      +  I    GY I  V+ IK +
Sbjct: 222 SEDTTTKDSGGDLGFITQGTLPE-EVEKVTFTLPLN-QISKPIKTDEGYYITKVTEIKEA 279

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +T  + + K +I +++   K S+   +  + 
Sbjct: 280 YTTPYFQAKAEIEDKLLYDKRSKVFNKWLEE 310


>gi|148262225|ref|YP_001228931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
 gi|146395725|gb|ABQ24358.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
          Length = 345

 Score =  123 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 56/390 (14%), Positives = 126/390 (32%), Gaps = 80/390 (20%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
           +   K  +++      +   ++ +  +        V    +          ++  +I ++
Sbjct: 27  STFVKTIVIIAIALLPLTARAELVSGI-----AAIVNDDIITTYEVD----RDAALIGKE 77

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
           +     +E A    L K  L  L+    ++Q I+++ +      V   I        K N
Sbjct: 78  MEKRAPAEAADKAALRKTALSRLIDKKLIEQKIKELDIRVPEEEVRQSIEDV----KKQN 133

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
           K + +  V+ LA +G++  +Y     + L R  ++                         
Sbjct: 134 KLTQEALVAALAAQGLSFDQYKAQLKEQLERLRLMSQ----------------------- 170

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
                      V A        + ++++  +  Y   E+ R   I F + +K  + EI+ 
Sbjct: 171 ----------EVRAKIQVGEREMREYYDANRAKYGEEEFTRARQIYFKIDKKAAESEITR 220

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--- 307
                                           A    Q  K GK F +LA++        
Sbjct: 221 ----------------------------VTAAAANVLQEAKSGKDFAELAKKYSDDPAAA 252

Query: 308 -SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
                LG+F +  +    +  ++ ++ K G+ + ++    G  I  +          F+E
Sbjct: 253 KDGGELGTFKRGDMI-PEIERALDTM-KPGEISDLVRTPAGIHIIKLEERTKGKAKPFEE 310

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           VK +I + +   K+ ++  +    L +  A
Sbjct: 311 VKAEIEDFLYKKKSEDRFNQWVNDLRKGAA 340


>gi|294054630|ref|YP_003548288.1| hypothetical protein Caka_1097 [Coraliomargarita akajimensis DSM
           45221]
 gi|293613963|gb|ADE54118.1| conserved hypothetical protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 553

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 81/578 (14%), Positives = 160/578 (27%), Gaps = 85/578 (14%)

Query: 1   MLEIIRKA---SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           M+  I+        W+    LV++ V F+   + +     +  ST           +   
Sbjct: 1   MISWIQHHLIRHGRWIFITLLVIIVVAFVFT-IGNTPGCTTNRSTY---------QAQNF 50

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGL----DKKILDNLVSGATLDQFIEDIGL-EADH 112
             +        Q +G  VN     + G     D++    L     +      +G+     
Sbjct: 51  FGYDLNSPRDRQILGQKVNLSSIINTGRPIVSDQQYQVQLPQRIAMLFLAGQLGIPTPTQ 110

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             +   I   P+F G D +FS D F +       N +     +  +L     +      +
Sbjct: 111 EELSEYIQTKPIFFGPDGQFSRDTFTNVTDNLESNPEFPRGLFVTVLEEDYRIDQVRAVV 170

Query: 173 RPSNLLLDQAKRFYFENRSVDY----IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
                +L    R   +     Y      L          P+ A L  ++E  K +Y  P 
Sbjct: 171 SGPGFVLPAEARVQTQRNQTSYKLSTASLAYSTFSPELAPAEADLKAYYETNKQSYEIPV 230

Query: 229 YKRISYILFDVHEKEKKI-EISNDELQAEYEKNKEKYFSPEIRTVEQL------------ 275
             +  Y+LF               EL+  +  N+ ++ S       Q             
Sbjct: 231 RVKSEYVLFKSEAYLDSSKTYDESELRDHFIANRARFVSEYEAKQPQAEPAAEGEAAPEK 290

Query: 276 -----------------VFPNQKEADEAFQSLK----------KGKKFIQLAEEQGKSLS 308
                            +    K A+ A Q+              + F  L  E   SL 
Sbjct: 291 AAVTYENVKDAVAQDYALVQAAKTANNAAQAFALTLYNDFIEQDSEAFKALLAEYKVSLQ 350

Query: 309 DISLGSFSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
            +   + +     ++        FSL     +T     + GY +   +   P+    F+ 
Sbjct: 351 AVEPFTQADTAQRNLPAEMLTEAFSLPSNRYYTSAYPTADGYAVLFRTGTIPAEIPPFEV 410

Query: 367 VKKDIANQMRITKASEKVKE----DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
           V  ++    +  +  +   +        L+  L+ G S  E +    +        +F  
Sbjct: 411 VAAEVTTAYKADEKRKLFNDNGLRLKDELDTQLSAGKSFKEAAEGLGLQVQSFDRFEFTE 470

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
                   A        L +    +            D        ++ +P       E+
Sbjct: 471 --------APAELNRSALDQAQNLEAGAVSSMISTQDDLGLFVFVEEKIVP-------EI 515

Query: 483 LTDVKKDWKTVKTAEEVSS--KANQLVLEYSKEGKNFR 518
             + +   +  +   ++S    A  L  E   +G    
Sbjct: 516 TDENEDFAQAEQWLSQLSQYISATALSSELMSQGTEVE 553



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 5/137 (3%)

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY-----SKEGKNFRDIGKNLGASLLTTN 532
             E V   V +D+  V+ A+  ++ A    L        ++ + F+ +      SL    
Sbjct: 294 TYENVKDAVAQDYALVQAAKTANNAAQAFALTLYNDFIEQDSEAFKALLAEYKVSLQAVE 353

Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
              + D   +    + +++ FS P              Y V   T +    +   +   +
Sbjct: 354 PFTQADTAQRNLPAEMLTEAFSLPSNRYYTSAYPTADGYAVLFRTGTIPAEIPPFEVVAA 413

Query: 593 YLTQMMNKDLLDSVIAY 609
            +T     D    +   
Sbjct: 414 EVTTAYKADEKRKLFND 430


>gi|198275842|ref|ZP_03208373.1| hypothetical protein BACPLE_02017 [Bacteroides plebeius DSM 17135]
 gi|198271471|gb|EDY95741.1| hypothetical protein BACPLE_02017 [Bacteroides plebeius DSM 17135]
          Length = 712

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 94/720 (13%), Positives = 224/720 (31%), Gaps = 124/720 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F+       L    G   V  V  + +    +     
Sbjct: 4   LQKIR--SKGPLLVIVIGLALFAFIAGDAWKVLQPHQGKQDVGEVNGEVLSAQDYQKMVD 61

Query: 62  QELGMISQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI- 119
           +   +I    G   +  ++     +  ++  + V+   + +  E +GL+     +   I 
Sbjct: 62  ELSEVIKLTNGLNSLTEDQLN--NVKDQVWQSYVNNKLIAEQAEKLGLKVTDAEIQSIID 119

Query: 120 -------ARSPLFHGKDNKFSHDVFVSRL---AREGIN--EKEYIDHYTKM--------- 158
                   ++P  + +   F  D+    L   A    +    +Y+++Y KM         
Sbjct: 120 QGTHPLLMQTPFRNPQTGMFDKDMLKKFLVDYANLNASQMPAQYVEYYQKMGAFWQFVEK 179

Query: 159 -LSRTDV----VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAV 212
            L+++ +      +    +  + +  + A     E   +    +    +  +    S++ 
Sbjct: 180 TLAQSTLAEKYQNLVAKSLISNPVAAEDAFNSRTEQSDLLLAGVPYSSINDSTIQVSDSE 239

Query: 213 LTQWFEKYKDNYRA-PEYKRISYILF-----DVHEKEKKIEISN---------------- 250
           +   + + K+ ++   E + I YI       D   K  + E++                 
Sbjct: 240 IKDRYNEKKEQFKQLVETRDIRYIDVKVVPSDADRKAVEKEVTEYSNQLASTTADFGTFV 299

Query: 251 --------------------DELQA-------------EYEKNKEKY---------FSPE 268
                                ++ +              Y +  + +          SP+
Sbjct: 300 RSTGSSVNYSDVPVSKSVFPADVASRLDSTNVNEVYGPYYNQTDDSFNAFKLLAKVSSPD 359

Query: 269 IRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYI 320
                Q+          +  AD  + +LK G  F  +A+  G++   + ++  S+    +
Sbjct: 360 SIQFRQIQVYADTEEKTKTLADSIYNALKGGADFAAVAKIYGQTGEATWVNAQSWEGSEL 419

Query: 321 PDVSLADSIFSLAKK--GDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRI 377
            D   +  I +L  +   +   +  G    +I  V N K   T      VK+++      
Sbjct: 420 -DADNSKFINTLLNQPVNELANLNMGQAN-LILQVMNKKSMQTKYKVAVVKREV------ 471

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
             + E     Y +  +F+A  T++D + +  +     L  +           V  +    
Sbjct: 472 EFSKETYNAAYNKFSQFVAQNTTIDSMVKNAEESGYTL--MPRTDLSSAEHYVGGVRSTR 529

Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
           + L  +F               +   M V + +   A  R +  V   ++ + +  K AE
Sbjct: 530 EALKWIFAAKPGEVSPLYECGENDHLMVVALDKIHEAGYRDINSVAEMLRAEIRRDKKAE 589

Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
           ++  +  +       +G            +      I+   +     G      V +   
Sbjct: 590 KIMEEMKKYNSIAQVKGMKDAVSDSVKHVTFSAPAYISVTRSSEPVIG-----AVAAKTA 644

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
                 PI+      + +V   + G  + +  +  + LT M  +   + +I  L  +  V
Sbjct: 645 ANKVSAPIKGNGGVYMIQVYAKEKGSEKFDAKQEEATLTNMAVRIAGNQLINDLYQKAKV 704


>gi|114566203|ref|YP_753357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337138|gb|ABI67986.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 324

 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 55/367 (14%), Positives = 102/367 (27%), Gaps = 90/367 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG---------LDKKIL 90
           S ++  V  + +    +  + +        +     + ++A S G         L  +  
Sbjct: 27  SPSIAEVNSEIITQEQYDKACQNLKQAYEVQNPAQ-SGDKADSSGKIDSEMEKRLQDQAF 85

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
           D+LV  A L Q  E  G++     +   I     F         D +   L    +NEKE
Sbjct: 86  DSLVMQALLRQDAEKRGIKIKEKEIDVAIDS---FKANLAAEGKDAYQKFLQENNLNEKE 142

Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
             +     L    +       +                                      
Sbjct: 143 LREEARMQLLVNQLQKKINASI----------------------------------TIEE 168

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
             L Q++++   +++                                             
Sbjct: 169 EELQQYYQENIASFQ----------------------------------------EAAGM 188

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
            +  ++    KEA E    L++G  F QLA+E     S      LG  ++         +
Sbjct: 189 QISHILVATDKEARELLTQLQQGADFAQLAQEHSSCASKAQGGYLGVVNENSNYVPEFKN 248

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           +   L         +   FGY I     ++P+ T SF EVK  I  Q+   K +    + 
Sbjct: 249 AALQLKAGEITQEPVKSDFGYHIIKAGQLQPTTTKSFDEVKNQIRMQLEKEKENTLFSQY 308

Query: 388 YKRLEEF 394
            + L + 
Sbjct: 309 MEDLRQQ 315


>gi|326792525|ref|YP_004310346.1| copper amine oxidase-like domain-containing protein [Clostridium
           lentocellum DSM 5427]
 gi|326543289|gb|ADZ85148.1| copper amine oxidase-like domain-containing protein [Clostridium
           lentocellum DSM 5427]
          Length = 444

 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 102/269 (37%), Gaps = 31/269 (11%)

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPA----I 205
                  L    ++  +      S    ++AK++  + +   VDYI+ N   +       
Sbjct: 160 AKEILTQLDYEMMMLQYQYQYDDSFFETEEAKQYMEQRKGELVDYIIKNKVALIKGRELK 219

Query: 206 ADPSNAVLTQWFEKYKDNYRAP---EYKRISYILFD----------------VHEKEKKI 246
            +P+   +   F K K++Y      E   ++  L                       K I
Sbjct: 220 LEPTVTEVNNEFNKTKEDYETAAEFEKALVNSGLTTEGYKTQIKDSLTISNVAKYISKNI 279

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            +++ E++A YE N   Y  P    +  ++   ++EA        KG  F +LA++ G  
Sbjct: 280 PVTDAEIKAYYESNSGNYTMPPGAEMAHILVATEEEAKAIKAEYDKGTSFAELAKKYGTD 339

Query: 307 L---SDISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI-KPSFT 361
               +   LG  +      D    D   +L ++G  +  +   FG+ +  V N+ K ++ 
Sbjct: 340 GTKDTGGELGYIAYDSSYYDQDFLDGAKTL-EEGQVSNPVKTQFGWHLIKVLNVHKEAYK 398

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390
           V  +E+K+D+ N +   KA+E +      
Sbjct: 399 VLLEEIKEDLKNIIISEKATEFIYSQLDE 427


>gi|28209982|ref|NP_780926.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium tetani
           E88]
 gi|28202417|gb|AAO34863.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium tetani
           E88]
          Length = 246

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 91/239 (38%), Gaps = 11/239 (4%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-- 224
               G + ++  L+     +   R   +     R        S  ++  + +  K +   
Sbjct: 6   AVFNGRKITDGDLNNTIAQFPAERQQFFKTEEGRKNLLNEIISFELIHDYAKDNKFDLDD 65

Query: 225 ----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
               +    K+ + I + + +   + EI  ++++  Y  NK  +   E  + + ++   +
Sbjct: 66  LYLEKIEAIKKETLIQWTISKVLSEAEIKEEDIKEFYNNNKNMFIEEERVSTKHILVETK 125

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           +EA+     +K G  F + A+E     S      LG+F +  +      ++ F + K+G 
Sbjct: 126 EEAENIVDEIKNGLSFEEAAKEYSNCPSKGAGGDLGTFGRGRMVK-EFEEAAFEM-KEGT 183

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
            +  +   FGY I  +       T  + EVK  I  Q+   K  +  K+  + L+   +
Sbjct: 184 ISNPVKTQFGYHIIKLEKKYAKGTKEYNEVKDLIKKQLHQEKERDLYKKFTEDLKNKYS 242


>gi|77917707|ref|YP_355522.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus
           DSM 2380]
 gi|77543790|gb|ABA87352.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus
           DSM 2380]
          Length = 316

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 123/354 (34%), Gaps = 73/354 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S     V +  +  +       + L   +Q+ G        +   L  K+LD L+    L
Sbjct: 24  SRIAAIVNQDIITTAQLDREIDKMLSAEAQETGIT----PVQREELRHKMLDKLIEDTLL 79

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +Q IE +GL      V   I          N  + +     L  +GIN  +Y +   + L
Sbjct: 80  NQRIEKLGLHVSDEAVEQAINDVQA----QNNITREQLKQALVAQGINFDDYRERLRQQL 135

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
               ++G                                 R + +  + +N  +  ++  
Sbjct: 136 LNFQLIG---------------------------------REIQSKVEVTNTEMRDYYRS 162

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           + D+YR   Y R+S I F +       +I+    +A                        
Sbjct: 163 HLDDYRNDPYLRLSRITFRLPPGNTPADIAAMRAKA------------------------ 198

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
                +A Q L++GK F+++  +   +  +    +G  ++  + + S   +I  L+  G 
Sbjct: 199 ----ADALQQLRRGKDFLEVLMQNAATSGVDGGDMGKITEGSLSE-SFNRAISGLS-VGQ 252

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            + +I    G+ +  +    P  T +F+ VK+ I+ ++   K +  + E  + L
Sbjct: 253 VSEIIETPEGFHLLRLDERNPGDTQTFETVKEQISRKLMEDKRAAALTEWTENL 306


>gi|313888122|ref|ZP_07821796.1| putative foldase protein PrsA [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845812|gb|EFR33199.1| putative foldase protein PrsA [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 362

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/394 (16%), Positives = 128/394 (32%), Gaps = 97/394 (24%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV-- 75
              + V   + G S    S +       VG  ++P + F  S+   +  ++   G  V  
Sbjct: 6   FGKIAVTIALAG-SLVACSGANKDAAAKVGGVEIPMADFYKSYAARVNQLTSMYGEDVLK 64

Query: 76  ---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
              + +++    L ++ + +L +   L Q  E   +      V  ++        +    
Sbjct: 65  NKEDGKKSTDELLREQAITDLTTTEALKQDAEKSKITVSDEEVNKKLDEIKA---QLGG- 120

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
             + F   L   G+  KEY+    + +    +VG +                        
Sbjct: 121 -EEAFNKFLKENGL-PKEYVA---ENMKNQMLVGKYT----------------------- 152

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                  +      +P+   + + +E  KD+Y                            
Sbjct: 153 -------QEKLKELEPTEEEVKKQYEDNKDSYY--------------------------- 178

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---- 308
                                 ++  + KEA+   + + KG+ F +LA+E  K       
Sbjct: 179 ----------------KAKASHILVDDLKEANVLRKKILKGEDFAKLAKENSKDTGSAQN 222

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
             SLG F+   + + +    I  + K GD +  I   FGY I  + + KP   + F  VK
Sbjct: 223 GGSLGEFTSGQMVE-AFDKEIAKM-KVGDISEPITTQFGYHIIKLEDKKP---LEFDAVK 277

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
             I  Q++  K  E + +  K  +  + + TS +
Sbjct: 278 DQIKAQLQQEKFKEYIDKVKKDAKIKIYVNTSKE 311



 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 83/250 (33%), Gaps = 30/250 (12%)

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL--LFRVFGKDD 448
           L+       S DE+ R + I  +          +     V+     ++L  +    G ++
Sbjct: 63  LKNKEDGKKSTDELLREQAITDLTTTEALKQDAEKSKITVSDEEVNKKLDEIKAQLGGEE 122

Query: 449 PLSKDHTVALPDGSYMW------VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
             +K          Y+       + + +    + ++LE    +VKK ++  K +    +K
Sbjct: 123 AFNKFLKENGLPKEYVAENMKNQMLVGKYTQEKLKELEPTEEEVKKQYEDNKDS-YYKAK 181

Query: 503 ANQLVLEYSKE----------GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
           A+ ++++  KE          G++F  + K       +             F    + + 
Sbjct: 182 ASHILVDDLKEANVLRKKILKGEDFAKLAKENSKDTGSAQ----NGGSLGEFTSGQMVEA 237

Query: 553 FSGPVEMVKCF----PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
           F   +  +K      PI     Y + K+ + K     E D     +   + ++     I 
Sbjct: 238 FDKEIAKMKVGDISEPITTQFGYHIIKLEDKKPL---EFDAVKDQIKAQLQQEKFKEYID 294

Query: 609 YLKSQYSVTV 618
            +K    + +
Sbjct: 295 KVKKDAKIKI 304


>gi|170756164|ref|YP_001783178.1| peptidylprolyl isomerase [Clostridium botulinum B1 str. Okra]
 gi|226712003|sp|B1IGZ5|PRSA_CLOBK RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|169121376|gb|ACA45212.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           B1 str. Okra]
          Length = 336

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/395 (14%), Positives = 120/395 (30%), Gaps = 86/395 (21%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQEL 64
           K+++  ++ + L +  + F    + +        ST+  V  +K+       S   +Q L
Sbjct: 2   KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQVL 61

Query: 65  GMISQKIGFVVN-SERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
             I  + G     SE+ +       K+IL+NL++   L Q  +++ +      +  E  +
Sbjct: 62  SQIKTQYGEEFEKSEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEADK 121

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
                          F   L   G  ++   ++    +    V+                
Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVIN--------------- 166

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA-PEYKRISYILFDVH 240
                               V       +    +++ + +  +   P    +S+IL    
Sbjct: 167 -------------------EVTKDVKVEDKDAQKYYNENQSMFTEKPNTMNVSHIL---- 203

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                                                  + EA +  + L   + F ++A
Sbjct: 204 ------------------------------------VKTEDEAKKVKKRLDAKEDFAKVA 227

Query: 301 EEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +E  +       G         +   D +   +  +L K G  +  +H  FGY I  +++
Sbjct: 228 KEVSQDTGSKDKGGLLGDISYSDSNFDPTFMKAAIAL-KSGAISNPVHTQFGYHIIKINS 286

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            K      F  VK+DI  Q++  K  E   +  + 
Sbjct: 287 KKEYPVKKFDSVKEDIKKQLKQEKQQEAYTKKIEE 321


>gi|134297991|ref|YP_001111487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
           reducens MI-1]
 gi|134050691|gb|ABO48662.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
           reducens MI-1]
          Length = 344

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 126/364 (34%), Gaps = 73/364 (20%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLV 94
            + ++ V +V  + +          Q +    Q+ GF + ++  +++   L++ ILD+++
Sbjct: 25  NNKANVVATVNGKDITRQQLDKQTNQMVERYKQQ-GFDLTTKENKAMKEQLEQSILDDMI 83

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
           +   L Q  E   L      +   +A       K    + + +   L    + E E  + 
Sbjct: 84  TKELLLQEAEKQKLIPAKEAIDKNMAEI-----KKGFPNEEEYKKALEESKVTEAELREQ 138

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
                                  +LD++ R  +E  + D           +  P++  +T
Sbjct: 139 L----------------------ILDESSRKLYEKVTAD-----------VKKPTDEEIT 165

Query: 215 QWFEKYKDN--YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
           +++ + K       PE   + ++LF ++  +  +                       R  
Sbjct: 166 KFYNENKGREPIGTPERLEVKHMLFAINSDQPGVP---------------------KRGE 204

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADS 328
           ++ +   +    E  Q   KG+ F  +A E+   L     G            D +   +
Sbjct: 205 KEALEAAKLALAEVTQ---KGRDFGVVAREKSDDLGTRENGGSYTIDRGANTTDPAFEKA 261

Query: 329 IFSLAKKGDFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
             +L K G+ T   +  ++G+ I  +  + P+ T +  EVK  IA Q+       K  + 
Sbjct: 262 AENL-KPGEITKEPVKSAYGFHIIKLEKVTPASTKALTEVKDSIAAQLEGEAKQAKFTQF 320

Query: 388 YKRL 391
              L
Sbjct: 321 IDNL 324


>gi|304315716|ref|YP_003850861.1| PpiC-type peptidyl-prolyl cis-trans isomerase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777218|gb|ADL67777.1| PpiC-type peptidyl-prolyl cis-trans isomerase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 323

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 85/201 (42%), Gaps = 15/201 (7%)

Query: 201 HVPAIADPSNAVLTQWFEKYK--DNYRAPEYKRISYILFDV-HEKEKKIEISNDELQAEY 257
                   ++  +T  +   K  ++    E  + + ++  +     K +++++ E +  Y
Sbjct: 117 AEKEKFTATDKEITDEYNAEKATNSKVTKEMAKDNVLINKLVDSWTKNVKVTDSEAEKYY 176

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLG 313
             NK ++   E+     ++  ++K A+E +  L+KG  F +LA++     S       LG
Sbjct: 177 NDNKSQF---EVVKASHILVSDEKTANEIYDKLQKGANFAELAKQYSIDTSTKDNGGELG 233

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
            F++  +      ++ F+L K G+ +  +   +GY I          T SF +VK  I +
Sbjct: 234 EFTRGTMV-TEFENAAFAL-KPGEISKPVKTQYGYHIIKSEGKT---TKSFNDVKSSIIS 288

Query: 374 QMRITKASEKVKEDYKRLEEF 394
            +  TK      +  + L++ 
Sbjct: 289 YLENTKKQNIFNQKSEALKKA 309


>gi|91200985|emb|CAJ74042.1| hypothetical protein kuste3282 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 582

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/520 (12%), Positives = 154/520 (29%), Gaps = 100/520 (19%)

Query: 9   SRTWVAK---IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
           S +W+ K   I  +++     +WG+S +   +     +  V  +K+    F         
Sbjct: 3   STSWLQKNKKIVYIIMIFAVSVWGISFSAMELIPKKPIAKVLGRKITQDEFTE------- 55

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
                    +  +R       + I+  +     + +    +GL      V   + R   F
Sbjct: 56  -------MAIRWQRLFFPQTQESIIPIVWKQFLMVEKANQMGLMITSPEVEDGLRRI-AF 107

Query: 126 H--GKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
              G+  +      +  L     +   +      + L    +  +     + ++  L   
Sbjct: 108 QVFGQTPELEKRRLMQFLCNTFKLTPDQIQRTIREALLVEKLESLLRSSTKVTSEELWYR 167

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAPEYKRI 232
                E   +  + L           +   L  ++ KYK+           Y  PE  +I
Sbjct: 168 FSLENEQVKLKIMALKASDFADTVQVNEEELIAFYNKYKNKEYDAHSGTPGYMLPEMVKI 227

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
             ++    + +  ++++ ++++  YE NKE  +                           
Sbjct: 228 ECLIAKFDDMQALVDVTKEDIKKYYEDNKETQYK-------------------------- 261

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                ++  E+                +P+           K+ D + V           
Sbjct: 262 -IDPAEITTEESS--------------VPEDKTETMSEGDTKEKDLSHVYK--------- 297

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
                     S+  VK +I   +    A EK  E   +++E +      ++      +  
Sbjct: 298 ----------SYDAVKDEIRKILAGQMAREKASEVIHKVDEEIYATIDKEDRPNFSDLAV 347

Query: 413 I-DLPLVDFAGKDVKGKEVAA------IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
              L     AGK+ K + +A        P  +++    F ++        +   +G ++ 
Sbjct: 348 KYKLTRTIPAGKESKREFLAESDLWEIFPGSDKISKVAFDREK-FEPSMPLEFVEG-FVI 405

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
            Q+ +         EE+   V +D    K  ++    A +
Sbjct: 406 FQVIDKKYPAPAPFEEIKNKVLRDITIEKGLQKSIEIAEK 445


>gi|120437303|ref|YP_862989.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase [Gramella
           forsetii KT0803]
 gi|117579453|emb|CAL67922.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase [Gramella
           forsetii KT0803]
          Length = 706

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 85/596 (14%), Positives = 209/596 (35%), Gaps = 59/596 (9%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           L  IR+  R+    I + +    F++  +  +  + S S  +T+ +V   ++    F   
Sbjct: 4   LNKIRQ--RSVFLIIIIALALFSFVLADVIRNGGMASQSSQNTIATVNGNEIGREEFA-- 59

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
             +E+    + +G  +++ +A       +I +  +    L++ +E +G+ A   +V   +
Sbjct: 60  --REVEAFERNMGNNMSTTQAV-----NRIWEQKLRQVILEEEVEKLGIRAGEAQVTQLV 112

Query: 120 ----ARSPLFHGKDNKFSHDVFVSRLAREGINE-------KEYIDHYTKMLSRTDVVGMF 168
               A +P F  +   F  +     +A             +++  +  +         M 
Sbjct: 113 RTQMANNPNFTNEAGMFDENRLREYVANLKETSPQAYEQWQQFTSNLAETAKMNSYYNMV 172

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAP 227
             G+  + +  +QA R   +N ++ ++ +    VP    + + + +  + + +   +   
Sbjct: 173 GAGVGATLIEGEQAYRLQNDNINMKFVQVPYSSVPDSEVEVTKSDIKSYLDNHSSRFETE 232

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
             + + Y++F+          + + L +   +  E              +     A++  
Sbjct: 233 ASRSLQYVIFEESASGDDKTEAKETLNSLRNQRVE--------------YNAAVGANDTL 278

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
                   +          L   +   F  ++  +   A++IFSL  +G+       +  
Sbjct: 279 AGFDNTDDYATFV-GNNSDLPFENRFKFRNDFSGNN--AEAIFSL-NEGETYGPYEENGY 334

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           + ++ V   K         VK   ++ +   + S+      +  EE   L  S+  + + 
Sbjct: 335 WKLSKVIQTKNIP----DSVKA--SHILVTYQGSQLGAGVSRSKEEAQVLADSIAGVVKG 388

Query: 408 EKIVSIDLP---LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           +     +L      D + K+  G     +P      F  +  D+       V  P G ++
Sbjct: 389 DNAKFAELASEFSADGSNKEQGGDLGYFVPGTMIPAFDNYVFDNSTGDVGVVETPLGYHV 448

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
                ++  AR  K+  +  +++    + KT   + ++  +   E S    +F DI K  
Sbjct: 449 ISIDDQTEAARAVKVATIAKEIQA---SEKTMNNLFNEVTKF--EISASEGDFGDIAKQG 503

Query: 525 GASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
              + T   +  ++      G     I   F    ++      E    YVV ++T+
Sbjct: 504 NYEVRTVKDVKALEENIPGAGAQRRVIQWAFEDEAKVGDVRRFETNNGYVVAQLTS 559



 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 86/226 (38%), Gaps = 31/226 (13%)

Query: 291 KKGKKFIQLAEEQG---------KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
                F  +A++           K+L +   G+ ++  +   +  D      K GD    
Sbjct: 491 ASEGDFGDIAKQGNYEVRTVKDVKALEENIPGAGAQRRVIQWAFEDEA----KVGDVRR- 545

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
              + GYV+A +++ +    +S +E   ++   +R  K ++ +K+  K        G+S+
Sbjct: 546 FETNNGYVVAQLTSKRDKGLMSVEEASGEVTPILRKEKKAKLIKDRLK--------GSSL 597

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
            EI+  + +   +   V+ +        +A    + +++  VF  + P      +A   G
Sbjct: 598 QEIANNQGVSVQNADAVNLSS-----PTLAGAGEEPEVVGAVFSLE-PGKVSSPIAGEKG 651

Query: 462 SYMWVQIKESIPARD---RKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
            Y+   + +         +   +  +  ++   T++  + +  KA 
Sbjct: 652 VYVAELVSKFEAPTMDSYKGFAQQESAARRAQATMRIFDALKKKAE 697


>gi|115375725|ref|ZP_01462979.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stigmatella
           aurantiaca DW4/3-1]
 gi|310825132|ref|YP_003957490.1| peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1]
 gi|115367288|gb|EAU66269.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stigmatella
           aurantiaca DW4/3-1]
 gi|309398204|gb|ADO75663.1| Peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1]
          Length = 322

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 115/359 (32%), Gaps = 72/359 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS-VGLDKKILDNLVSGAT 98
                 V R  +  S        EL  ++   G      RA     + K+ LD L++   
Sbjct: 25  DRVAAVVNRDIITLSEVNQRAAPELSRLA---GEKDPRRRADGRAQILKQSLDVLIAEKL 81

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           ++  I ++G+      V   +A       ++   + + F   L REG   K Y +  +K 
Sbjct: 82  IEAEIRELGMTVSPSEVDEAMADV---RKQNGVETPEQFEQLLQREGYTLKSYREFLSKQ 138

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           ++R  ++ M VG                                      S   L   + 
Sbjct: 139 IARGRLMQMKVG---------------------------------PKVKVSEEDLKAAYA 165

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           +Y             +IL  V  K  + ++          + K +  + E R        
Sbjct: 166 QYAKLEGGEAEVHARHILVSVDPKATQEQVDAA-------QKKAQAIAEEARR------- 211

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
                         G  F  LA  +     +     LG F +  +   +   + F+L K+
Sbjct: 212 -------------PGMDFASLARARSEGPSAEDGGDLGFFRRGVMV-PAFEKTAFAL-KE 256

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           G+ +  I  +FG+ +  V   +      F++++  +  Q+R  K  + + +  + L + 
Sbjct: 257 GEVSEPIRTNFGWHVLKVEERRAVGVAPFEDLRAKLEQQLRQDKTEKYIDQYVQELRQK 315


>gi|310658175|ref|YP_003935896.1| ppic-type peptidyl-prolyl cis-trans isomerase [Clostridium
           sticklandii DSM 519]
 gi|308824953|emb|CBH20991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           sticklandii]
          Length = 249

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 16/227 (7%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
           +     +N   +Q K+   +   V+  +     + +  + ++A     FEK K+N+    
Sbjct: 28  LNPQIAANFQGEQGKQALLQEL-VNQKLFYLEALESSIE-NDAKFQSEFEKLKENFVTQ- 84

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
                   + +      + ++++EL+A Y +NKE + SP+      ++  +   A+E   
Sbjct: 85  --------YSIQNLINSVSVTHEELEAYYNENKEGFISPQKVQASHILVSDVSLAEEVKG 136

Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            L +G+ F  LA+E     S      LG F +  +      ++ F +A  G+ +  +   
Sbjct: 137 KLAQGESFEALAKEYSSCPSKERGGDLGMFGEGQMV-PEFEEAAFKMA-VGEISEPVETQ 194

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           FG+ I  V++ + S  +SF+EV+ ++   M   K     +     L+
Sbjct: 195 FGFHIIKVTDKQESGLLSFEEVRSNLLRNMMAEKQGAIYQNHIADLK 241


>gi|168181007|ref|ZP_02615671.1| foldase protein PrsA [Clostridium botulinum NCTC 2916]
 gi|226950994|ref|YP_002806085.1| peptidylprolyl isomerase [Clostridium botulinum A2 str. Kyoto]
 gi|254783410|sp|C1FNE4|PRSA_CLOBJ RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|182668154|gb|EDT80133.1| foldase protein PrsA [Clostridium botulinum NCTC 2916]
 gi|226843437|gb|ACO86103.1| prsA family protein [Clostridium botulinum A2 str. Kyoto]
          Length = 336

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/395 (13%), Positives = 120/395 (30%), Gaps = 86/395 (21%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQEL 64
           K+++  ++ + L +  + F    + +        ST+  V  +K+       S   +Q L
Sbjct: 2   KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQVL 61

Query: 65  GMISQKIGFVVN-SERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
             I  + G     +E+ +       K+IL+NL++   L Q  +++ +      +  E  +
Sbjct: 62  SQIKTQYGEEFEKTEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEADK 121

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
                          F   L   G  ++   ++    +    V+                
Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVIN--------------- 166

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA-PEYKRISYILFDVH 240
                               V       +    +++ + +  +   P    +S+IL    
Sbjct: 167 -------------------EVTKDVKVEDKDAQKYYNENQSMFTEKPNTMNVSHIL---- 203

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                                                  + EA +  + L   + F ++A
Sbjct: 204 ------------------------------------VKTEDEAKKVKKRLDAKEDFAKVA 227

Query: 301 EEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +E  +       G         +   D +   +  +L K G  +  +H  FGY I  +++
Sbjct: 228 KEVSQDTGSKDKGGLLGDISYSDSNFDPTFMKAAIAL-KSGAISNPVHTQFGYHIIKINS 286

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            K      F  VK+DI  Q++  K  E   +  + 
Sbjct: 287 KKEYPVKKFDSVKEDIKKQLKQEKQQEAYTKKIEE 321


>gi|116626458|ref|YP_828614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116229620|gb|ABJ88329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 418

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 113/355 (31%), Gaps = 71/355 (20%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
              V    +         +QE+   +++ G      +         +L   +    L Q 
Sbjct: 30  AAKVNGDIITRGELEKK-RQEIEAEAKRQGLTGARLQDAVKEAHADVLSKEIDTLLLVQK 88

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA-REGINEKEYIDHYTKMLSR 161
            +D+ +      V   +A       +      D F   +  + G+  +++       +  
Sbjct: 89  GKDLNISV-DADVTRRLAEI---QVQQKISDPDKFQQFIREQTGMTFEDFKQQMKNEMLT 144

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
             V+G                                   V        A L ++++++K
Sbjct: 145 QRVIGQ---------------------------------EVMRNITVPEAELQKYYDEHK 171

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
             +   E                +I IS +              SPE       V   +K
Sbjct: 172 SEFMRKE----------AQVFLSQIVISTE------------GKSPEQ------VAAAEK 203

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY---IPDVSLADSIFSLAKKGDF 338
           +A +      KG+KF  LA +    +     G +       + D ++ + +F  AKKG  
Sbjct: 204 KAKDLVARANKGEKFSDLARDNSDDVETAKNGGYVGSMPKGMMDKAIEEIVFK-AKKGFV 262

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           +     + G+VI  V +   +   SF EVK ++ +++   KA+ KV+    +L E
Sbjct: 263 SDPFKRAQGFVILKVEDRFEAGQASFDEVKNELQDRLTQPKANAKVRTYLTQLRE 317



 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 5/138 (3%)

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
           K+ +       KA  LV   +K G+ F D+ ++    + T      + +  K      I 
Sbjct: 193 KSPEQVAAAEKKAKDLVARANK-GEKFSDLARDNSDDVETAKNGGYVGSMPKGMMDKAIE 251

Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISYLTQMMNKDLLDSV 606
           ++     +     P +    +V+ KV +     +    + K++    LTQ      + + 
Sbjct: 252 EIVFKAKKGFVSDPFKRAQGFVILKVEDRFEAGQASFDEVKNELQDRLTQPKANAKVRTY 311

Query: 607 IAYLKSQYSVTVHDNLIQ 624
           +  L+    + + D  + 
Sbjct: 312 LTQLREDAFLEIKDGYVD 329


>gi|305666291|ref|YP_003862578.1| peptidylprolyl cis-trans isomerase [Maribacter sp. HTCC2170]
 gi|88708283|gb|EAR00520.1| peptidylprolyl cis-trans isomerase [Maribacter sp. HTCC2170]
          Length = 706

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 87/600 (14%), Positives = 197/600 (32%), Gaps = 65/600 (10%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           LE IRK  RT V  + + +    F+I G+  ++        S+V  +   ++    F   
Sbjct: 4   LENIRK--RTTVLILIIGMALFAFVISGVFTNNDFGGGKIGSSVAEINGNEISIDDFKRK 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +                  A ++ +  ++ D  V  + L Q  ED+G++ +  ++   I
Sbjct: 62  VETASNRFG---------PAASTMQVVNQVWDQEVRNSILSQQFEDLGIDIERDQIMNFI 112

Query: 120 ARS------PLFHGKDNKFSHDVFVSRLAREGI-NEKEY------IDHYTKMLSRTDVVG 166
                    P F  ++  F  + F + +A   + +  +Y           +   +     
Sbjct: 113 KNMPSYSQSPQFQDENGIFDENKFRNFIADLKVNSPSQYNLWLQDEQSIIQNAKQQAYFN 172

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYR 225
           +   G+  +    +   +   +   + Y+ +    VP    + + + +  +   +K++++
Sbjct: 173 LVKAGVGATLKEGELDYKLANDKVDIKYVRIPYISVPDSTLNITKSEIQSYINSHKEDFK 232

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
             E + I Y+ F+     +      DE     E   E     +        F    +  +
Sbjct: 233 QEEARDIQYVYFEEKASAEDENAVKDETIKLLEDTVEYREQTDKMD-TITGFRTTSDIAD 291

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH-G 344
                K   KF  + + + + LS +               AD++ +L K G+       G
Sbjct: 292 FLDR-KSDIKFDTIYKAK-RDLSTV--------------FADTLVTL-KMGETYGPYRDG 334

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            F      VS +    T    +    +       +A   V    +  EE          +
Sbjct: 335 DF----FKVSKMVNKKTNGSAKASHILIKWKGAERAEATVTRSKEEAEEMAKGI-----L 385

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD-HTVALPDG-- 461
           +  +K  ++ + L     +         + Y ++        D   +    T+ L +   
Sbjct: 386 AETKKKDAVFVELARDNSEGPSAPNGGDLGYFQEGRMVAEFNDFVFNNKVGTIDLVETAL 445

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
            Y  V+I +        + ++ T  ++   +  T   + + A +  +E     K F D+ 
Sbjct: 446 GYHIVKIDDKED-----IYQIATLAREIEPSENTINTLFTNATKFEMESISGEKAFTDLA 500

Query: 522 KNLGASLLTTNQINRMDN--ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
           K     +   N+I  MD          + +   F G  ++           Y + ++T +
Sbjct: 501 KESEYVVRPVNKIKAMDENLPGLTTQRNIVQWAFKGDTKVGDIKRFNLNNGYAIVQMTAA 560



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 130/363 (35%), Gaps = 36/363 (9%)

Query: 271 TVEQLVFPNQKEADEAFQSL-----KKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPD 322
             E  V  +++EA+E  + +     KK   F++LA +      + +   LG F +  +  
Sbjct: 365 RAEATVTRSKEEAEEMAKGILAETKKKDAVFVELARDNSEGPSAPNGGDLGYFQEGRMV- 423

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
               D +F+  K G    ++  + GY I  + + +  + +    + ++I           
Sbjct: 424 AEFNDFVFN-NKVGTI-DLVETALGYHIVKIDDKEDIYQI--ATLAREIEP---SENTIN 476

Query: 383 KVKEDYKRLE-EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
            +  +  + E E ++   +  ++++  + V   +  +         + +  +  +  ++ 
Sbjct: 477 TLFTNATKFEMESISGEKAFTDLAKESEYVVRPVNKIK-----AMDENLPGLTTQRNIVQ 531

Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
             F  D  +       L +G Y  VQ+  +     + +E+  T V    +  +       
Sbjct: 532 WAFKGDTKVGDIKRFNLNNG-YAIVQMTAAYQEGLKTVEDASTTVLPILRKER------- 583

Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEM 559
           KA +L+   + +GK+  DI K+   S+   + +          G +   +   F+  V  
Sbjct: 584 KAAELIA--ANKGKSIEDIAKDNSVSVSNASALTVKAPTVPGAGREPAVVGTAFAMNVND 641

Query: 560 VKCFPIENGLSYVVFKVTNSKVGP-VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                IE      +  VT  +  P +     F + L       +  +V   LK    +  
Sbjct: 642 TSEL-IEGESGVFMISVTKKEEAPKLDNYSTFANTLKTSNAARVNTAVYNALKEASEIED 700

Query: 619 HDN 621
           +  
Sbjct: 701 NRA 703


>gi|153941271|ref|YP_001392892.1| peptidylprolyl isomerase [Clostridium botulinum F str. Langeland]
 gi|189037912|sp|A7GJD2|PRSA_CLOBL RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|152937167|gb|ABS42665.1| foldase protein PrsA [Clostridium botulinum F str. Langeland]
 gi|295320869|gb|ADG01247.1| foldase protein PrsA [Clostridium botulinum F str. 230613]
          Length = 336

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/395 (13%), Positives = 121/395 (30%), Gaps = 86/395 (21%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQEL 64
           K+++  ++ + L +  + F    + +        ST+  V  +K+       S   +Q L
Sbjct: 2   KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPNMQQVL 61

Query: 65  GMISQKIGFVVN-SERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
             I  + G     +E+ +       K+IL+NL++   L Q  +++ +      +  E  +
Sbjct: 62  SQIKTQYGEEFEKTEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEADK 121

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
                          F   L   G  ++   ++    +    V+                
Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVIN--------------- 166

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA-PEYKRISYILFDVH 240
                               V       +    +++ + +  +   P    +S+IL    
Sbjct: 167 -------------------EVTKDVKVEDKDAQKYYNENQSMFTEKPNTMNVSHIL---- 203

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                                                  + EA +  + L   + F ++A
Sbjct: 204 ------------------------------------VKTEDEAKKVKKRLDAKEDFAKVA 227

Query: 301 EEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +E  +       G         +   D +   +  +L K G+ +  +H  +GY I  +++
Sbjct: 228 KEVSQDTGSKEKGGLLGDISYSDSNYDPTFMKAAIAL-KSGEISNPVHTQWGYHIIKINS 286

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            K      F  VK+DI  Q++  K  E   +  + 
Sbjct: 287 KKEYPVKKFDSVKEDIKKQLKQEKQQEAYTKKIEE 321


>gi|85859367|ref|YP_461569.1| peptidylprolyl isomerase [Syntrophus aciditrophicus SB]
 gi|85722458|gb|ABC77401.1| peptidylprolyl isomerase [Syntrophus aciditrophicus SB]
          Length = 364

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 118/361 (32%), Gaps = 74/361 (20%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
                V+ V   K+          ++L  I +++      +      + K+++D+ V   
Sbjct: 66  GPGDPVIEVDGVKMTKGQLDTEVNRKLESIRKRVPAEKLPQ--VKTNIQKRLIDDFVVKT 123

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
            L+  +  + + A    V   + +       +         + L +  +  ++  +    
Sbjct: 124 LLNNEVNRLKITATEQEVNEAVEKLKSSLPANVSL-----ENLLKKNQMTREKMREEIRL 178

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            +    ++                                       +  P+   +T ++
Sbjct: 179 GIQINKLM---------------------------------VSRTKNLPKPTEKEITSFY 205

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +K +D ++ PE   + +IL      +                             E+++ 
Sbjct: 206 KKNQDRFKLPEAVHVRHILIARAPDDG----------------------------EKVIA 237

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAK 334
             + +A+   + +  G  F +LA+      S      LG  S+  +      D+IFSL K
Sbjct: 238 EKKAKAEGLRKKILAGADFAELAKSNSDCPSKSAGGDLGIVSRGQMVKP-FEDAIFSL-K 295

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-VKKDIANQMRITKASEKVKEDYKRLEE 393
           K    PV+   +G+ +  V +++   TV+  E  K  I++ +   K  E  ++    L+E
Sbjct: 296 KNQIGPVVQTEYGFHVVQVLDVRQPKTVALDERTKGMISSFLLQQKQQEAFRKMVASLKE 355

Query: 394 F 394
            
Sbjct: 356 K 356


>gi|153854234|ref|ZP_01995542.1| hypothetical protein DORLON_01534 [Dorea longicatena DSM 13814]
 gi|149753283|gb|EDM63214.1| hypothetical protein DORLON_01534 [Dorea longicatena DSM 13814]
          Length = 245

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 6/169 (3%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           ++       + +    + +++DE++  YE NK KY        + ++  N+++  E   +
Sbjct: 76  RKDILAQMAMRKLFATVNVTDDEIKEYYEANKSKYSKGASVHAKHILVDNEEKCTELLNA 135

Query: 290 LKKGKK-FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           +  G+K F  +A+E     S      LG F +  +      D+ F+ A+ G     +   
Sbjct: 136 ITSGEKVFEDVAKESSTCPSGANGGDLGEFGRGQMVK-EFEDAAFA-AEVGHVVGPVKTQ 193

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           FGY +  V + K +   S +EVK  I  ++   K  E  +     L++ 
Sbjct: 194 FGYHLIKVEDKKEAGESSLEEVKDQIRAELSQKKQEEAYRAKVDELKKK 242



 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 5/160 (3%)

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           +    N+       + E  K   ++     A   + ++ ++  E L   TS +++     
Sbjct: 88  LFATVNVTDDEIKEYYEANKSKYSKGASVHAKHILVDNEEKCTELLNAITSGEKVFEDVA 147

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
             S   P     G   +      +   E   F                     Y  ++++
Sbjct: 148 KESSTCPSGANGGDLGEFGRGQMVKEFEDAAFAAEVGHVVGPVKTQF-----GYHLIKVE 202

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
           +   A +  LEEV   ++ +    K  E   +K ++L  +
Sbjct: 203 DKKEAGESSLEEVKDQIRAELSQKKQEEAYRAKVDELKKK 242


>gi|288959403|ref|YP_003449744.1| parvulin-like peptidyl-prolyl isomerase [Azospirillum sp. B510]
 gi|288911711|dbj|BAI73200.1| parvulin-like peptidyl-prolyl isomerase [Azospirillum sp. B510]
          Length = 374

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 75/177 (42%), Gaps = 10/177 (5%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           KD  +  E + +         K +   ++ + LQ  Y+   ++  + E      ++   +
Sbjct: 171 KDEIKRAEERGVQRAFIQKEIKAR---VTPEALQKAYQDYLKENPAQEEVKAAHILVEKE 227

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +EA      LKKG  F +LA+E+ K          LG F+K+ + +   A++ FS+ K G
Sbjct: 228 EEAKAIIAQLKKGGDFAKLAKEKSKDAAAAAQGGDLGYFTKDAMVEP-FANAAFSM-KPG 285

Query: 337 DFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + +   +   FGY I  V + +     +  EVK  +   +     +  V+E   + +
Sbjct: 286 EVSKEPVKTQFGYHIIKVEDRRTQPQPTLDEVKPQLEQTLSKDIVTALVEELRGKAK 342



 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 2/133 (1%)

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN-ENKFF 544
            +++ K      E   +A  ++ +  K G +F  + K          Q   +        
Sbjct: 213 AQEEVKAAHILVEKEEEAKAIIAQLKKGG-DFAKLAKEKSKDAAAAAQGGDLGYFTKDAM 271

Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD 604
                +  FS     V   P++    Y + KV + +  P    D+    L Q ++KD++ 
Sbjct: 272 VEPFANAAFSMKPGEVSKEPVKTQFGYHIIKVEDRRTQPQPTLDEVKPQLEQTLSKDIVT 331

Query: 605 SVIAYLKSQYSVT 617
           +++  L+ +  V 
Sbjct: 332 ALVEELRGKAKVE 344


>gi|217967894|ref|YP_002353400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336993|gb|ACK42786.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dictyoglomus
           turgidum DSM 6724]
          Length = 355

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/400 (10%), Positives = 114/400 (28%), Gaps = 94/400 (23%)

Query: 9   SRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
            +  + KI  +V    F++ G     ++    +  V+ +    V    + +         
Sbjct: 2   KKHSIFKILFIVFVAIFILGGAFVALVYHQMKNYPVLKINGMPVSRQEYKDRLNFMKTQY 61

Query: 68  SQKIGFVVNSERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS-PL 124
           S        +   +     +  + + +L     +    +  G+      V   +      
Sbjct: 62  SIMFNVDFTTTEGQKLLPKVKDETIKDLARWKIVQTEAKKRGISISEKEVDTRLKEIEKE 121

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
           F           F   LA+ G +   + +   K L    ++                   
Sbjct: 122 FPSVL------QFEMTLAQYGYDRNTFKEELRKNLLMRKLI------------------- 156

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
                            +      +   + +++ +    +  P+  ++            
Sbjct: 157 ---------------DEIGKDEKVTEDEIKKYYNENIKLFEHPKEYKVYS---------- 191

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303
                                         ++  ++K A E +  L   K  F   A++ 
Sbjct: 192 ------------------------------ILIKDEKRAKEVYNELTSNKITFTDAAKKY 221

Query: 304 GKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            +          LG  ++  +P+  +    F+L      +  I  + GY I  V+ +K +
Sbjct: 222 SEDTTTKDKGGELGFITQGTLPE-EVEKITFTLPLN-QISKPIKTNEGYYITKVTEVKEA 279

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
           +T  + + K +I +++   K ++   +    LE+ ++   
Sbjct: 280 YTTPYFQAKAEIEDKLLYDKRAKVFNKW---LEDQVSKAK 316


>gi|256819263|ref|YP_003140542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea DSM 7271]
 gi|256580846|gb|ACU91981.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea DSM 7271]
          Length = 705

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 96/605 (15%), Positives = 206/605 (34%), Gaps = 78/605 (12%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           LE IR  S+T      + +    F+I   +    FS    + + SV  + VP  +F    
Sbjct: 4   LEKIR--SKTVFLIAIIGLALFAFIISDFIGKGRFSNHNPNEIGSVNGEDVPIDAFRQQV 61

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +       Q  G V + E A+       + +  V    L+Q IE +GL  +  ++   +A
Sbjct: 62  EN---ATRQANGQVSSIEAAKY------VWEQNVQQILLNQQIEKLGLSVEKDQILAILA 112

Query: 121 -----RSPLFHGKDNKFSHDVFVSRLARE-GINEKEY------IDHYTKMLSRTDVVGMF 168
                ++P F  +   F  + F + LA     N + Y       D   +   +     + 
Sbjct: 113 KTPLAQNPQFVNEYGVFDANKFTNYLATLKNTNPQAYAQWKMQEDAIIEDAKQRMYFSLI 172

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAP 227
             G+  +N   +       +   + Y+ L    +     + +++ +  + +K++  ++  
Sbjct: 173 RAGLGVTNTEAEMEYHQEKDLADISYVALQYSSIDDKSVNVTDSEIQDYIKKHEKQFKQE 232

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
            Y+ I YI+      +  IE   + L         K   PE+    +    N+ +    F
Sbjct: 233 AYRNIQYIVVSEKPSQTDIETEKESL--------LKLLQPEVVFNSK---TNKNDTIAGF 281

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
              K  K F+    +     + ++  +         S AD++F+L   G           
Sbjct: 282 AKTKNIKDFVDRHSDVPYDSTFVNKDNLR------SSYADTLFNLP-VGKVFGPYEEDGS 334

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE---------KVKEDYKRLEEFLALG 398
             ++ +   +P   V        I      ++A+             +  + L +  A G
Sbjct: 335 LKLSRMIAKQPGGAVK----ASHILIAYTGSQAATPNTTRTKEEAKAKAEELLAQAKAAG 390

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
               +++R        +      G   KG  V  +          F  ++ +     V  
Sbjct: 391 ADFAQLARENSEEPGAVYSAGDLGFFSKGAMVKPLEE--------FAFNNAVGTIGIVET 442

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK---TVKTAEEVSSKANQLVLEYSKEGK 515
             G +  V++ +          E +       K   +  T   + SK     ++ ++  K
Sbjct: 443 AFG-FHVVKVTDK--------AEAVNIATISRKVDPSEATINSLFSKVTNFEMKAAQNPK 493

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVV 573
            F +I K    S+L  + +++ D++    G     +  +F    ++       +G +Y+V
Sbjct: 494 EFANIAKKSELSVLRADNLHKNDDQIIGLGSNRSIVQWLFQKDTKIGDIKKFTSGGNYIV 553

Query: 574 FKVTN 578
            ++  
Sbjct: 554 AQLVK 558



 Score = 80.8 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 119/344 (34%), Gaps = 34/344 (9%)

Query: 288 QSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           Q+   G  F QLA E  +      S   LG FSK  +    L +  F+    G    ++ 
Sbjct: 385 QAKAAGADFAQLARENSEEPGAVYSAGDLGFFSKGAMVKP-LEEFAFN-NAVGTI-GIVE 441

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-EKVKEDYKRLEEFLA-LGTSM 401
            +FG+ +  V++   +  +        I+ ++  ++A+   +       E   A      
Sbjct: 442 TAFGFHVVKVTDKAEAVNI------ATISRKVDPSEATINSLFSKVTNFEMKAAQNPKEF 495

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
             I+++ ++  +    +          ++  +     ++  +F KD  +  D       G
Sbjct: 496 ANIAKKSELSVLRADNLHK-----NDDQIIGLGSNRSIVQWLFQKDTKIG-DIKKFTSGG 549

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
           +Y+  Q+ +        +++    VK      K A  +  KA         +G +   I 
Sbjct: 550 NYIVAQLVKQGEEGISSVQDAAPMVKPILIREKKAAILKEKA---------KGNSLEAIA 600

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
                 + +   +   +      G +   +   F      +   PI+   +  V ++T++
Sbjct: 601 SANKTEVKSAANLIMKNPTIIGEGREPKVVGAAFGLKQGQL-SKPIDGENAVYVIQLTSA 659

Query: 580 KVGPV-QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
            V P       +   + ++        ++  L+S  ++  + +L
Sbjct: 660 TVAPALDNYKTYAETVEKLRTDRAAQGILKSLESTATIKENLSL 703



 Score = 38.4 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 42/122 (34%), Gaps = 11/122 (9%)

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIF 330
           ++   +K A    +   KG     +A      +   +        I     +  +  + F
Sbjct: 577 ILIREKKAA--ILKEKAKGNSLEAIASANKTEVKSAANLIMKNPTIIGEGREPKVVGAAF 634

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--KDIANQMRITKASEKVKEDY 388
            L K+G  +  I G     +  +++   +   +    K   +   ++R  +A++ + +  
Sbjct: 635 GL-KQGQLSKPIDGENAVYVIQLTS--ATVAPALDNYKTYAETVEKLRTDRAAQGILKSL 691

Query: 389 KR 390
           + 
Sbjct: 692 ES 693


>gi|261418900|ref|YP_003252582.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           Y412MC61]
 gi|297531148|ref|YP_003672423.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           C56-T3]
 gi|319765717|ref|YP_004131218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           Y412MC52]
 gi|261375357|gb|ACX78100.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           Y412MC61]
 gi|297254400|gb|ADI27846.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           C56-T3]
 gi|317110583|gb|ADU93075.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           Y412MC52]
          Length = 281

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 80/200 (40%), Gaps = 26/200 (13%)

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP---------EYK---RISYILFDVHEKE 243
           +++ + +      ++  + +  E+ K+ Y            E      +   L       
Sbjct: 56  LIDEKVLSKKYKVTDEEIDREIERIKEAYGTQYDLAVQQNGEKVIREMVKLDLLRTKAAV 115

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           + I+++  EL+  Y+  K K           ++  ++K A E    L KG+ F +LA+E 
Sbjct: 116 EDIKVTEKELKEYYDNYKPKI------RASHILVKDEKTAKEVKAKLDKGEDFAKLAKEY 169

Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            +          LG F    +      ++ + L K G+ +  +   +GY I  V++ +  
Sbjct: 170 SQDPGSASNGGDLGWFGPGKMVK-EFEEAAYKL-KVGEVSDPVKTDYGYHIIKVTDKE-- 225

Query: 360 FTVSFQEVKKDIANQMRITK 379
              SF E+K +IA +++  K
Sbjct: 226 KKKSFNEMKDEIAFEVKRNK 245


>gi|325846640|ref|ZP_08169555.1| putative peptidylprolyl isomerase PrsA3 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481398|gb|EGC84439.1| putative peptidylprolyl isomerase PrsA3 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 248

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           +H   K I++S+DEL+  Y+ NKE    P+      ++  ++ EA++  + +K G +F +
Sbjct: 86  MHLLFKDIKVSDDELKEYYDNNKEVIKQPKTYKASHILVDSEDEANKILEEIKAGLEFEK 145

Query: 299 LAEEQGKS--LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            A++           LG F +  +      +++  L  +G+ +  +   FGY I  + + 
Sbjct: 146 AADKYSTDKASKGGDLGEFPQGAMVK-EFEEALDKL-NEGEISKPVKSQFGYHIIKLDHT 203

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
             +    F E+K  I + + + K  EK  E   +++E +
Sbjct: 204 HDAHLPEFDEIKDRIHDTLLMIKRQEKYLEKTNKIKEKV 242


>gi|170760531|ref|YP_001788878.1| peptidylprolyl isomerase [Clostridium botulinum A3 str. Loch Maree]
 gi|226712004|sp|B1KTE0|PRSA_CLOBM RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|169407520|gb|ACA55931.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 335

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/395 (13%), Positives = 119/395 (30%), Gaps = 84/395 (21%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN--SWKQ 62
           +R A +  ++ + L V  + F    + +        ST+  V  +K+          +KQ
Sbjct: 1   MRSAKK-LLSVLCLGVFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDENPRFKQ 59

Query: 63  ELGMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +  +  + G            + ++   ILD L++   L Q  +++ +      +  E 
Sbjct: 60  VVSQMKMQYGEEFEKSEQGKEVIKEQKSQILDELITEKVLLQKGKELKVIPKDEELNKEA 119

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            +               F   L   G  ++   ++    +    V+     G        
Sbjct: 120 DKKVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVINEATKG-------- 171

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                                         +    +++ + +  +               
Sbjct: 172 --------------------------VKVEDKDAQKYYNENQSMFT-------------- 191

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            EK   + +S                         ++   + EA +  + L   + F ++
Sbjct: 192 -EKPNTMNVS------------------------HILVKTEDEAKKVKKRLDAKEDFAKV 226

Query: 300 AEEQGKSLSDISLGSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A+E  +  S    G        +   D +   +  +L K+G  +  +H  FGY I  +++
Sbjct: 227 AKEVSQDGSKDKGGLLGDISYSDSNLDPTFLKAAIAL-KEGAISNPVHTQFGYHIIKINS 285

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            K      F  VK+DI  Q++  K  E   +  + 
Sbjct: 286 KKEYPVKKFDAVKEDIKKQLKQEKQQEAYTKKIEE 320


>gi|308275078|emb|CBX31677.1| hypothetical protein N47_E51890 [uncultured Desulfobacterium sp.]
          Length = 316

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 58/372 (15%), Positives = 120/372 (32%), Gaps = 77/372 (20%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
              V    V         ++ + +    +G+      ++   + K +L++L+    L Q 
Sbjct: 17  AAVVNGMPVYREELD---EEIIKIQKAILGYGKPLTVSKVKSVQKDVLESLIRQEILYQE 73

Query: 103 IEDIGLEADHGRVWGEIAR-SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
               G++ D   +  EI      F  + +      + + L R  I+ +       K    
Sbjct: 74  SLKSGIKPDEKSIDKEIKTLIGQFKSETD------YKNALNRRNISPEMLRSRLLKNNVL 127

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
              +G                                          S+  + ++++   
Sbjct: 128 QQYIGRL----------------------------------AEKTSVSDNDIIEYYQGRI 153

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           + ++ P   R+S+I      K                         E R  EQ++     
Sbjct: 154 ELFKQPLQVRVSHIFIRTDPKWD-----------------APRKQEERRKAEQIL----- 191

Query: 282 EADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
                 + +K+GK F  +A E            LG      + D  L D++F L K G+ 
Sbjct: 192 ------KDIKQGKDFAVIAGEHSDGPTKTKGGDLGYIKMGQL-DNKLEDAVFKL-KTGEL 243

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
           + ++    G+ I   ++ KP   +S+++VK+ I   +   KA  +  +   +L E   + 
Sbjct: 244 SNIVETDNGFHIFKATDKKPETVLSYEDVKEKIRQFLHEEKAKREADQQAGKLREKATVE 303

Query: 399 TSMDEISRREKI 410
             ++E     KI
Sbjct: 304 ILLNEEGSLAKI 315



 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 21/60 (35%)

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
             +   D  +   +  +  P      E+V   +++     K   E   +A +L  + + E
Sbjct: 244 SNIVETDNGFHIFKATDKKPETVLSYEDVKEKIRQFLHEEKAKREADQQAGKLREKATVE 303


>gi|257066459|ref|YP_003152715.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus
           prevotii DSM 20548]
 gi|256798339|gb|ACV28994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus
           prevotii DSM 20548]
          Length = 359

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 65/442 (14%), Positives = 138/442 (31%), Gaps = 125/442 (28%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSS--------------------TVVSVGRQKVPFS 54
           KI  V+L    L  G +    +  G++                    TV  V  +K+   
Sbjct: 4   KIIPVMLMASLLFAGCNQNKDAGEGANNKTEQTEEVKDKKTEKLDDKTVAIVDGEKISKD 63

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
                +K EL   +  +        A    L   I+  +V    +   I+   ++ D   
Sbjct: 64  D----YKDELSFYASML--------ASQQQLKNSIVTMMVQDKLIANDIKKNDIKIDDKE 111

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V   + +         +   + F   L    ++  ++ +   K L               
Sbjct: 112 VDDALMQ--SVQNFGGQ---EQFDKTLDDYNMSLDKFKETLKKDLM-------------- 152

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
                      Y ++R             +  + +   + ++FE  KD +          
Sbjct: 153 -----------YKKHRE---------WFDSNNEVTEDEIKKYFEDNKDEFV--------- 183

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
                                                   ++  +++ A E  + +  G+
Sbjct: 184 ----------------------------------KVDASHILVQDEETAKEVKEKIDNGE 209

Query: 295 KFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            F +LAEE         +  ++G+FSK  +      D+ FS+ K+G+ +  +   FGY I
Sbjct: 210 DFAKLAEEYSTDTASAKNGGAVGAFSKGQMVK-EFEDAAFSM-KEGEVSDPVKSQFGYHI 267

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
             V+ I      SF++ K++I  +++  K ++ +K+ +      +    S  + S   K 
Sbjct: 268 IKVNKITD----SFEDSKEEITKKIKDQKYADYIKKLHDDAN-VVTENASEKDASDDVKG 322

Query: 411 VSIDLPLVDFAGKDVKGKEVAA 432
              ++          K ++V  
Sbjct: 323 SETEVKTEKEEDTTDKEEKVED 344


>gi|322419887|ref|YP_004199110.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320126274|gb|ADW13834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 446

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 125/355 (35%), Gaps = 78/355 (21%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V+ V    +   +   + K  L     ++   ++ E  +        LD L S   L Q 
Sbjct: 157 VLRVNGSVITKQALDRAVKVMLA--QNQVKEPLSPEAQKEAEAAA--LDQLTSAELLYQE 212

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKMLSR 161
              + +     ++  ++A++        KF  D  F+  L    +  ++  D   + L  
Sbjct: 213 ASKLDMPELDKQIEEKVAQNRA------KFKTDAEFIEALKSIDMTMQDMQDFTRRDLMI 266

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
              +                                      A A  ++A   +++E+  
Sbjct: 267 NHFIEQ---------------------------------KFIAKAVITDAEAKKFYEENL 293

Query: 222 DN-YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           D  ++ PE  R S+IL    EK                       +PE R         +
Sbjct: 294 DRYFKKPESVRASHILVGSDEKA----------------------TPEERK------KAK 325

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           ++A+   + +K G+ F  +A+ +    S      LG+F +  +   +   + F+L K+G+
Sbjct: 326 EKAEALLKRVKAGEDFAAIAKAESSCPSASQGGDLGTFGRGQMV-PAFEKAAFAL-KQGE 383

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            + V+   FGY I  V+  + +    F+  K  IA+ ++  K  +++     +L+
Sbjct: 384 TSGVVESEFGYHIIKVTEKQEAGAEKFENAKDKIADFLKKQKVQKELISYIDQLK 438



 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 6/130 (4%)

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
           +  ++   KA  L L+  K G++F  I K   +    +   +                 F
Sbjct: 319 EERKKAKEKAEAL-LKRVKAGEDFAAIAKAESSCPSASQGGDLGTFGRGQMVPAFEKAAF 377

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFISYLTQMMNKDLLDSVIAY 609
           +          +E+   Y + KVT  +    +     KDK   +L +   +  L S I  
Sbjct: 378 ALKQGET-SGVVESEFGYHIIKVTEKQEAGAEKFENAKDKIADFLKKQKVQKELISYIDQ 436

Query: 610 LKSQYSVTVH 619
           LK    +  +
Sbjct: 437 LKKSAKIEKN 446


>gi|218289330|ref|ZP_03493564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240436|gb|EED07617.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 314

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/371 (12%), Positives = 109/371 (29%), Gaps = 111/371 (29%)

Query: 19  VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
             L V  + +G      +  G S V  VGR  +                    G      
Sbjct: 16  GALVVGGVWFG---TYAAHGGGSVVAMVGRTPITRQELAQ-------QSEAYAGSA---- 61

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
                     +L+ L++ A ++Q      + A    +  ++    +   ++   S     
Sbjct: 62  ----------MLEELIANALIEQAAAKQHITATDAEINQQLTAIEM---QNGITSDVQLN 108

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
           S LA+  + + +++D     +  + +                                  
Sbjct: 109 SLLAQNHMTKAQFLDQIRDNILASKLAEA------------------------------- 137

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
                     ++  +  ++++    +  PE ++I+                         
Sbjct: 138 ------QVHVTDKQIESYYKQNASMFTVPETRKIAV------------------------ 167

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGS 314
                           +    + +A++A   ++ G  F  +A+      +       LG+
Sbjct: 168 ----------------IEVKTKADAEKALAEIQSGTPFASVAKSVSIDAATRSEGGLLGT 211

Query: 315 FSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           FS++ +   D ++A + F+L + G  +  +    GY I     I P        V+ +I 
Sbjct: 212 FSEDELKAGDPAIASTAFAL-QAGAVSQPVKVQGGYEIVQCQAITPQHVQPLSAVRSEII 270

Query: 373 NQMRITKASEK 383
             ++   A+ +
Sbjct: 271 QDIKQQNAASE 281



 Score = 37.7 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 38/124 (30%), Gaps = 7/124 (5%)

Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
             E+ LA   S    +   K VSID       G      E         +    F     
Sbjct: 175 DAEKALAEIQSGTPFASVAKSVSIDAATRSEGGLLGTFSEDELKAGDPAIASTAFALQAG 234

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
                      G Y  VQ +   P   + L  V +++ +D K    A E      +LV +
Sbjct: 235 AVSQPVKV--QGGYEIVQCQAITPQHVQPLSAVRSEIIQDIKQQNAASE-----TKLVAQ 287

Query: 510 YSKE 513
            +K 
Sbjct: 288 LAKS 291


>gi|91203827|emb|CAJ71480.1| similar to peptidyl-prolyl cis-trans isomerase (survival protein
           SurA precursor) [Candidatus Kuenenia stuttgartiensis]
          Length = 333

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 121/360 (33%), Gaps = 83/360 (23%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
                 V ++  + +  +            + ++    +  +R  S  ++K+I+D LV+ 
Sbjct: 49  GDSKKVVATINGESITKAEVE--------RVLERFKNQLPPDRIAS--VEKQIIDGLVAQ 98

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               QFI+   +      +  E+                                 D   
Sbjct: 99  KLFLQFIKKNKIAIGDDALKTEL---------------------------------DKVR 125

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
           + +     +   + G     +L           R +  I L+     A    S+A +  +
Sbjct: 126 EDIK----LNPGLQGKSLEEVLESHGSNIEDLKRDI-TISLSLEKYFAD-TVSDAKVKDY 179

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           FEK +  Y   E  + S+IL D    + + +                            +
Sbjct: 180 FEKNRQIYDGTE-VQASHILVDTRNLQGEED----------------------------L 210

Query: 277 FPNQKEADEAFQSLKKG-KKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSL 332
              +++ ++    + +G K F +LAEE      S     LG F ++       A++ F+L
Sbjct: 211 AKAKQKIEKVKAEIAEGKKDFAKLAEEYSDCPSSKKGGDLGYFVRKGQMVEPFAEAAFAL 270

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            K G+ + V+   FGY I  V++IK    + F E+K +I   +    A   +    ++ +
Sbjct: 271 -KVGEVSDVVTTQFGYHIIKVTDIKKGGEIDFNELKPEIKLDILKQNADSLLDRLKQQAK 329



 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 95/282 (33%), Gaps = 17/282 (6%)

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            V       +++  EV + +  + +     +++    K++ + L       +  ++ KI 
Sbjct: 53  KVVATINGESITKAEV-ERVLERFKNQLPPDRIASVEKQIIDGLVAQKLFLQFIKKNKIA 111

Query: 412 SID---LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW--- 465
             D      +D   +D+K          E++L       + L +D T++L    Y     
Sbjct: 112 IGDDALKTELDKVREDIKLNPGLQGKSLEEVLESHGSNIEDLKRDITISLSLEKYFADTV 171

Query: 466 --VQIKESIPARDRKLE--EVLTDVK----KDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
              ++K+      +  +  EV         ++ +  +   +   K  ++  E ++  K+F
Sbjct: 172 SDAKVKDYFEKNRQIYDGTEVQASHILVDTRNLQGEEDLAKAKQKIEKVKAEIAEGKKDF 231

Query: 518 RDIGKNL-GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
             + +                               F+  V  V    +     Y + KV
Sbjct: 232 AKLAEEYSDCPSSKKGGDLGYFVRKGQMVEPFAEAAFALKVGEV-SDVVTTQFGYHIIKV 290

Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           T+ K G   + ++    +   + K   DS++  LK Q  + +
Sbjct: 291 TDIKKGGEIDFNELKPEIKLDILKQNADSLLDRLKQQAKIEI 332


>gi|222528654|ref|YP_002572536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455501|gb|ACM59763.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 335

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 61/388 (15%), Positives = 127/388 (32%), Gaps = 82/388 (21%)

Query: 9   SRTWVAKIFLVVLFVPFLIWGL-SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
            RT +    +  + +  ++ G+  + +  V  +  V  V  +K+    F  +++ ++   
Sbjct: 3   KRTKIVLFSIAAVVLLIILIGVTPEIVKYVDENRAVAIVNGEKITKKEFAINYRSQINYY 62

Query: 68  --SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
              +        ++     + + +LD L+      Q      +            +    
Sbjct: 63  GIDKTFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQARKRNITLTSAEKKAIDQQIE-- 120

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
             K +  S   F   L   G  E EY D               +     S L        
Sbjct: 121 QYKSDSQSGAEFRQYLQTIGATENEYKD-------------QVIKSKIVSKLY------- 160

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
                           +      ++A +  ++  +K ++      + S+ILF V++    
Sbjct: 161 --------------DEITKNQKATDAEVENYYSSHKSDFVE---VKASHILFKVND---- 199

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
                                       +     +K+A+E  Q +K G+ F +LA++  +
Sbjct: 200 ---------------------------SKEEAAKKKKAEEILQMIKDGQNFEKLAQKYSE 232

Query: 306 S----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     LG F K  +      D+ FSL   G+ + ++  S+GY I  V++ K    
Sbjct: 233 DENTKQKGGDLGYFRKGQMVK-EFEDAAFSL-NIGEISNIVKTSYGYHIIKVTDKK---Q 287

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYK 389
           +S  EVK +I + +   K  E  +   +
Sbjct: 288 LSLNEVKDEIKSTIESQKKDEYYQSLLE 315


>gi|110639640|ref|YP_679850.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282321|gb|ABG60507.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 697

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 121/351 (34%), Gaps = 33/351 (9%)

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYI 320
           + + E    E+     +K+A +    ++ G  F ++A + G      +   LG F K  +
Sbjct: 346 FRTNETDPAEKK-AEAKKQAQQILAEIQNGASFEKMAAQYGGDGTAANGGDLGWFGKGQM 404

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 ++IF  +K G    ++   FGY I  V   K         V           K 
Sbjct: 405 VKP-FENAIFGASKPGLLPNIVETQFGYHIIRVDVAKTGRKFLIASV----------QKN 453

Query: 381 SEKVKEDYKRL-EEFLALGTSMDEIS---RREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
            E        +     A   S+ +        K  +  +   + A  D   K + +I   
Sbjct: 454 VEAFDNTVDSIYRNADAFAASVKDTGTFRTEIKKYTAGVAKYEQANVDGAAKGITSINEA 513

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
            +++  ++  D  ++   +V   +   + V +          +E+V   +K         
Sbjct: 514 REIVKWLYSDDRSVNDVSSVFTVENKNVVVLLTRIREKGTASVEDVKDQIKPRVIIE--- 570

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ----INRMDNENKFFGYDGISQV 552
               +KA  +  +   EG +F    K  G   +T       ++     N  +  + +  +
Sbjct: 571 ----AKAKLIKEKLKVEGNDFAAAAKAYGKDAVTGTASDISLSSGMITNVGYEPEAVGAL 626

Query: 553 FSGPVE-MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
           F    E   + F  ENG   +V K  N  V  V + ++F++ L Q  N  L
Sbjct: 627 FGLAKEKKTEAFTGENG--VLVLKNKNITVSEVADYNQFVTQLQQQRNNRL 675



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/488 (11%), Positives = 137/488 (28%), Gaps = 74/488 (15%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
              I + S   V  I   +L         S   F  S ++ V  +    +    F    +
Sbjct: 4   FNKINQRSGLVVGTIVAGLLLFLLGDAFTSKNSFFSSFNNKVGEIDGSNITVEEF----Q 59

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +E+       G         +  +D      LV         E  G+E   G     +  
Sbjct: 60  KEITKAEALYGGN-----GNNANMDDLAWTQLVFERVNKVVYEKAGIEISEGEKVDLLEG 114

Query: 120 --ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT-----------KMLSRTDVVG 166
                 +     +      F+  L  + I  +E                     R+    
Sbjct: 115 EHMSDVVKQQFGSAEQLKQFLKYLDSDQIQSEEERASIKGRWRALKEYVYNERMRSKYET 174

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYR 225
           +       +     +      +    +Y+ +    +       ++A+L  + + +K+ + 
Sbjct: 175 IIKKSEYVTKAEAKRYYHALNDKAEAEYVYVPYFSINDTTITVTDAMLEDYLKAHKNEFE 234

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
               + I + +F+         + +  ++ +  + K+++          +   +   AD 
Sbjct: 235 VEAGRSIEFAVFNNV----PTGVDSSYVKKDLAELKDEFVLA-KNDSAFIRSNSDAPADP 289

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           ++  L +                               +LA  + SL +           
Sbjct: 290 SYVQLNQ----------------------------LPPALAARVNSL-QIDSVYGPFSYG 320

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK--VKEDYKRLEEFLALGTSMDE 403
            GY +  +  I+    V   +    +        A +K   K+  +++   +  G S ++
Sbjct: 321 TGYSLTKILKIESDTNV-MAKASHILFRTNETDPAEKKAEAKKQAQQILAEIQNGASFEK 379

Query: 404 ISRREK--IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
           ++ +      + +   + + GK    K              +FG   P    + V    G
Sbjct: 380 MAAQYGGDGTAANGGDLGWFGKGQMVKPFE---------NAIFGASKPGLLPNIVETQFG 430

Query: 462 SYMWVQIK 469
            Y  +++ 
Sbjct: 431 -YHIIRVD 437


>gi|291279541|ref|YP_003496376.1| hypothetical protein DEFDS_1151 [Deferribacter desulfuricans SSM1]
 gi|290754243|dbj|BAI80620.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 314

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 110/389 (28%), Gaps = 94/389 (24%)

Query: 9   SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
            R+ +    L +  V F            +       V  + +    + +     +  + 
Sbjct: 2   KRSIILGFLLAIFIVSFAF----------AEEKVAAKVNGKAI----YESEVNTVIAELL 47

Query: 69  QKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
            K G   +S    +  L    KKIL+ L+    L Q  +    +     V  ++      
Sbjct: 48  LKNGIAPSSVDFNNPQLVEIKKKILEQLIDREVLAQHSKTFTYKGIENDVNKKLDELKS- 106

Query: 126 HGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
                 F  D  +   L +  + E E  +   K +     +                   
Sbjct: 107 -----GFKTDKEYKDALQKNNLTETELKEKIKKNILVKKQL------------------- 142

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
                              +    S      ++ K KD +   +   + +I+    +K  
Sbjct: 143 ---------------DSYKSKITVSEQEKKDFYNKNKDKFVIKDSVHVKHIVLLTGDKR- 186

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
               S++E +                             D+ +  LKKG  F  LA++  
Sbjct: 187 ----SDEEAKKLI--------------------------DKIYSELKKGVNFEDLAKKYS 216

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG  ++  +         F   + G  +      FGY I  V + K    
Sbjct: 217 EDGSAKMGGDLGYITRGKVV-PEFEKVAFE-TEVGKISKPFKSQFGYHILKVVDKKKGKK 274

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +S+ EVK  I   +   K    +K + + 
Sbjct: 275 LSYDEVKDQITKILSDQKLETMIKSNIEN 303


>gi|219856704|ref|YP_002473826.1| hypothetical protein CKR_3361 [Clostridium kluyveri NBRC 12016]
 gi|219570428|dbj|BAH08412.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 258

 Score =  120 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 5/160 (3%)

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
            + +  + I++++ E++  Y  NK  Y  PE  T   ++  + ++A +    +KKG  F 
Sbjct: 95  TISKIMENIKVTDKEVEDYYTNNKSMYKKPENITARHILVDSFEKAAQISNEIKKGLSFE 154

Query: 298 QLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
             A++     S     +LG+F++  +       + F L + G  +  +   FGY +  V 
Sbjct: 155 DAAKKYSSCPSKAQGGNLGNFTRGQMV-PEFETAAFQL-EIGILSKPVKTQFGYHLIKVE 212

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
             +      F +VK  I N +   K + +  +    L++ 
Sbjct: 213 KKEKDSIKGFDKVKNAIKNGLLQEKRTLEYSKCINNLKDK 252


>gi|212696153|ref|ZP_03304281.1| hypothetical protein ANHYDRO_00689 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676782|gb|EEB36389.1| hypothetical protein ANHYDRO_00689 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 345

 Score =  120 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 112/357 (31%), Gaps = 104/357 (29%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  VG +K+   S    +K E+   S  +        A    L   I+  L+    +
Sbjct: 48  KDAVAVVGGEKISKES----YKDEMSFYSAML--------ASQQQLKPSIVQMLIQDKLI 95

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
              ++   ++ D   +  +  +         +   + F   L    ++  ++ +   K  
Sbjct: 96  ADDMKKNDVKVDDKELNDKFLQ--YIQQFGGQ---EKFDKMLEDYNMSSDKFKETIKKD- 149

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                                   + Y ++R                  S+  + +++++
Sbjct: 150 ------------------------QIYQKHRE---------WFEKKNPVSDKDIKKYYDE 176

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +KD                                                    ++  +
Sbjct: 177 HKDTLS-------------------------------------------QVKASHILVED 193

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKK 335
           +  A E  + L  G+ F +LA+E  K          LG F+K+ +     AD  F++ KK
Sbjct: 194 ENTAKEVKKKLDDGEDFAKLAKEYSKDTANSAKGGDLGYFTKDKMVK-EFADKAFAM-KK 251

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           G+ +  +  S+GY I  V + K +       +K++I+  +   K ++ + + + +  
Sbjct: 252 GEISDPVKTSYGYHIIKVEDKKDNP----DALKEEISKALNDKKYADYLTDLFNKAN 304


>gi|193213470|ref|YP_001999423.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum
           NCIB 8327]
 gi|193086947|gb|ACF12223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum
           NCIB 8327]
          Length = 701

 Score =  120 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 88/651 (13%), Positives = 197/651 (30%), Gaps = 102/651 (15%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLI-----WGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           +  +R  +      I L +L   F+      WG++      S    V +V  + +P + +
Sbjct: 4   MGKLRDKTH-----IVLFILVAAFVGLIVFEWGMNFTGPKQSRGGDVGAVNGEPIPAAEY 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
              +        Q+   V  + R  + GL ++  + +V    ++Q ++   ++     V 
Sbjct: 59  EQLYNMVSTSFRQRNPGVEVTSRIDA-GLREQAWNMVVDQTLINQLLKKYAVQVSDQEVL 117

Query: 117 GEIARS--------PLFHGK-DNKFSHDVFVSRLAREGINEKEY----IDHYTKMLSRTD 163
             +             F      +   ++     AR+    KE+     +   + L    
Sbjct: 118 EAVNSEVNPPGIIRQNFTDPKTGQIDRELLEK--ARQDPQAKEFWLKAQEMVRRELMINK 175

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++         ++  + +  +         Y   +   +P                    
Sbjct: 176 LLMDLKSMAIVTDPEVTELVQ-------RQYTTFSGSFIP-------------------- 208

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----- 278
                        +D         + ++E+ A YE +K ++     R+ E + FP     
Sbjct: 209 -----------FPYDFAGPASNFPVKDEEITAWYEAHKGQFQQEPTRSAEFVFFPLTPSA 257

Query: 279 -----NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
                 +KE D             +  + Q      +++     ++  +      IF   
Sbjct: 258 QDSLRAKKEIDGLVSEFASAPDEAEFVKIQSDIPDAVNVTRTRADFSLEG--GKKIFDSP 315

Query: 334 K--KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-EKVKEDYKR 390
           K   G     +     Y +  + ++  S           +       KAS E  +   ++
Sbjct: 316 KLAPGQIVGPVADQGYYRLLKIKSV--STGEPMASASHILIRVNPADKASVESGQALARK 373

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
           + + L  G S  +++ +      +     F G   K + V       +    VF      
Sbjct: 374 ILDELKNGASFAQLAAKYSQDPGNAQRGGFLGWFTKERMV------PEFTQAVFSGKPGQ 427

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK-TVKTAEEVSSKANQLVLE 509
                  L       ++I      +      V ++V +  K +  T+E +  KA  +V  
Sbjct: 428 VVGPV--LTRFGLHIIKIDGFDNRQI-----VCSEVVRQLKPSSLTSESIKRKA--MVFR 478

Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
              E K F +  K     ++ T    R    +K    + ++       +      I+N  
Sbjct: 479 DDAESKGFAETAKLQKLDVVQTGDFTRQTLVSKLGMDEDVASFAFSSKDGAISQVIKNDN 538

Query: 570 SYVVFKV-----TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
            +VV K+     T  ++   + K+   + L +      L + +A L     
Sbjct: 539 GFVVMKLLTKNDTGYRLLDDELKEMIKAELVREKQGTALKAKLAELSKSSG 589



 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 122/371 (32%), Gaps = 40/371 (10%)

Query: 272 VEQLVF-----------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFS 316
              ++              Q  A +    LK G  F QLA +  +   +      LG F+
Sbjct: 349 ASHILIRVNPADKASVESGQALARKILDELKNGASFAQLAAKYSQDPGNAQRGGFLGWFT 408

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           KE +       ++FS  K G     +   FG  I  +             V  ++  Q++
Sbjct: 409 KERMV-PEFTQAVFS-GKPGQVVGPVLTRFGLHIIKIDGFDNRQI-----VCSEVVRQLK 461

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
            +  + +  +    +    A      E ++ +K+       V   G   +   V+ +   
Sbjct: 462 PSSLTSESIKRKAMVFRDDAESKGFAETAKLQKL------DVVQTGDFTRQTLVSKLGMD 515

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKT 495
           E +    F   D       V   D  ++ +++        R L +E+   +K +    K 
Sbjct: 516 EDVASFAFSSKD--GAISQVIKNDNGFVVMKLLTKNDTGYRLLDDELKEMIKAELVREKQ 573

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIG-KNLGASLLTTNQIN-RMDNENKFFGYDGISQVF 553
              + +K  +L       G +   I   N G   +T+  I+ R  N + +     + +  
Sbjct: 574 GTALKAKLAELSKS---SGGSLDAIVQSNPGLRKITSGIISWRDGNIDGYGSDRRLVEAM 630

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQMMNKDLLDSVIAY 609
           +G        P++    + + K+   ++        EK + +  L ++  + L +     
Sbjct: 631 AGMELNKLSAPVQTSNGFALVKLDGRQLPYGLDLEVEKKRILPQLMKIKQEQLFNEYFEA 690

Query: 610 LKSQYSVTVHD 620
            +    +  + 
Sbjct: 691 ARRTAKIEDNR 701


>gi|239826178|ref|YP_002948802.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           WCH70]
 gi|259534743|sp|C5D6L9|PRSA_GEOSW RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|239806471|gb|ACS23536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           WCH70]
          Length = 276

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 85/218 (38%), Gaps = 35/218 (16%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAP---------EYK---RISYILFDVHEKEKKIEIS 249
           +      ++  + +  E  K+ Y            E      +   L       + I+++
Sbjct: 62  LSKKYKVTDKEIDKEIENLKEMYGTQYDLVVQQNGEKAIRDMVKLDLLRQKAAMEDIKVT 121

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGK 305
           + EL+  Y+  K K           ++  ++K A+E    L KG+ F +LA+    + G 
Sbjct: 122 DKELKDYYKNYKPKI------RASHILVKDEKTAEEIKTKLDKGEDFAKLAKQYSQDPGS 175

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           + +   LG F    +      D+ + L K G  +  +   +GY I  V++ +      F 
Sbjct: 176 APNGGDLGWFGPGKMVK-EFEDAAYKL-KVGQVSDPVKTDYGYHIIKVTDKEEK--KPFN 231

Query: 366 EVKKDIANQMR---------ITKASEKVKEDYKRLEEF 394
           E+K++I  +++          +K  + +K+    +E+ 
Sbjct: 232 EMKEEIEFEVKQSKLDPAKVQSKVEKLIKDAKVEIEDK 269


>gi|91200802|emb|CAJ73856.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 424

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 118/356 (33%), Gaps = 82/356 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +  + SV  +K+            L    +++             L+K+I + LV+ A L
Sbjct: 142 NKIIASVNEEKILRKDLDK----ILDRFRKQVP------PGAIPSLEKQITEQLVTQAIL 191

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            QF+ + GL+     V  EI +      K+           L  +G N    ID  +  +
Sbjct: 192 RQFVREKGLDVADDVVNNEINKMRENIAKNPAAEGKTLEQFLEIQGSN----IDELSTAI 247

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             +  +  +V                                     +  +  L  +F K
Sbjct: 248 RMSAALDAYVTN-----------------------------------NVDDKTLENYFIK 272

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
             + +   E    S+IL      +++ ++                               
Sbjct: 273 NINEFTGEE-VTASHILIGTKGMKEQEDLD----------------------------KA 303

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           + + +   + L  G  F +LA++  +     +   LGSF +  +   + A++ FS  + G
Sbjct: 304 RAKIESIKKELDNGANFAELAKKYSECPTGKTGGELGSFPRHGVMVETFANAAFS-TEVG 362

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             +  +   FGY + +V+N  P+  VSF  VK  +  ++   +  + + +     +
Sbjct: 363 KVSEPVKTEFGYHLIYVTNHAPAKDVSFDAVKDTVREKLVAIEMGDLINDLRDNAQ 418



 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 76/271 (28%), Gaps = 28/271 (10%)

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV-KEDYKRLEEFLALGTSM---DEISRREKIVSI 413
           P    S +   K I  Q+       +  +E    + + +         + I++       
Sbjct: 171 PGAIPSLE---KQITEQLVTQAILRQFVREKGLDVADDVVNNEINKMRENIAKNPAAEGK 227

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
            L        +++G  +  +     +           +      L +  Y    I E   
Sbjct: 228 TLEQF----LEIQGSNIDEL--STAIRMSAALDAYVTNNVDDKTLEN--YFIKNINEFTG 279

Query: 474 ARDRKLEEVLTD----VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA-SL 528
                 EEV         K  K  +  ++  +K   +  E    G NF ++ K       
Sbjct: 280 ------EEVTASHILIGTKGMKEQEDLDKARAKIESIKKELDN-GANFAELAKKYSECPT 332

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
             T         +        +  FS  V  V   P++    Y +  VTN         D
Sbjct: 333 GKTGGELGSFPRHGVMVETFANAAFSTEVGKV-SEPVKTEFGYHLIYVTNHAPAKDVSFD 391

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
                + + +    +  +I  L+    V ++
Sbjct: 392 AVKDTVREKLVAIEMGDLINDLRDNAQVEIN 422


>gi|330752745|emb|CBL88208.1| peptidyl-prolyl cis-trans isomerase [uncultured Leeuwenhoekiella
           sp.]
          Length = 706

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 91/631 (14%), Positives = 207/631 (32%), Gaps = 76/631 (12%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           L  IR+  R+      + +    F++  +  +    +      + SV  + +    F   
Sbjct: 4   LNKIRQ--RSVFLIAIIALALFAFVLADVLKNGGFSTEKSQRILGSVNDEDIEQQEFAGL 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV---- 115
              +        G  + + +A +   ++++         LD+  +D+G+  +  R+    
Sbjct: 62  VDSQTARY----GAGITTTQAVNAAWEQEV-----RRILLDEQYDDLGITVEQDRINDLL 112

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK-------EYIDHYTKMLSRTDVVGMF 168
              +   P F   D  FS       +A              +Y         +     + 
Sbjct: 113 KEALQNDPNFQN-DGVFSEQKLREYVATLKSTNPTMYAQWVDYEKQLANNEQQQIYFSLV 171

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAP 227
             G+  S      A       R ++Y+ +    +       S   ++ + EK+K ++++ 
Sbjct: 172 KAGLNTSFKEGQMAYELENNLRDLEYVQIPYASISDDKVSVSKEDISNYIEKHKADFKSE 231

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
             + + Y++F         +     + +   K  E              +    + ++  
Sbjct: 232 ASRNLRYVMFSESASATDEDALKGSVASLLNKRVE--------------YTAATKTNDTV 277

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             L       +   E    +         K  +P V++ADS+F L  +G        +  
Sbjct: 278 SGLAATTNPEEFVNEYS-DIRFAD-SYLFKNELP-VAVADSLFGL-NEGAIFGPYKDNGY 333

Query: 348 YVIAHVSNIKPSFTVSFQEVKKD--------IANQMRITKASEKVKEDYKRLEEFLALGT 399
           Y I+ V  +          VK          +AN    T++  + K+    L   +    
Sbjct: 334 YKISKVIGVSQIP----DSVKASHILLTYEGLANAASQTRSKTEAKKLADSLASVIKGSA 389

Query: 400 S-MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
           S + E++ +           D  G   KG+ V   P+ + +     G+   +   +    
Sbjct: 390 SKLAELAPQFSADGSKEKGGDL-GYATKGRYVK--PFNDFIFNGSTGEVGVVESQY---- 442

Query: 459 PDGSYMWVQIKESI-PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
               Y  ++I +     R  KL  V  +++    + +T  EV +   +  +  S++  +F
Sbjct: 443 ---GYHVIRIDDQKNKQRAIKLATVAKEIEP---SQETINEVFNATTKFQMAVSEDKNSF 496

Query: 518 RDIGKNLGASLLTTNQINRMDN--ENKFFGYDGISQVFS--GPVEMVKCFPIENGLSYV- 572
             + K+   ++   N I  +D     +    + I   F+       V+ F ++ G   V 
Sbjct: 497 EKVAKSENYTVRPVNSIKALDETLPGQGSQREIIRWAFNEDTKTGDVQRFNVDGGYLVVQ 556

Query: 573 VFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603
           +   T   + PV +    ++ + +   K  L
Sbjct: 557 LTSKTEKGLMPVDQASPRVTPIIRNEKKAEL 587



 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 82/232 (35%), Gaps = 29/232 (12%)

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------GKKFIQLAEEQGKSLS 308
            +  K K  + ++ TV + + P+Q+  +E F +  K           F ++A+ +  ++ 
Sbjct: 449 IDDQKNKQRAIKLATVAKEIEPSQETINEVFNATTKFQMAVSEDKNSFEKVAKSENYTVR 508

Query: 309 DIS----LGSFSKEYIPDVSLADSIFS-LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            ++    L            +    F+   K GD     +   GY++  +++      + 
Sbjct: 509 PVNSIKALDETLPGQGSQREIIRWAFNEDTKTGDVQR-FNVDGGYLVVQLTSKTEKGLMP 567

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
             +    +   +R  K +E +K+           G  ++ I+    +           G 
Sbjct: 568 VDQASPRVTPIIRNEKKAELIKKQI--------SGKDLNAIASANNVSVQT-----ANGV 614

Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
           ++K   +A    + +++   FG D     +      D     V++    PAR
Sbjct: 615 NLKNPTLAGAGTEPKVMGVAFGLDKGAVSNPI--AGDKGVYVVKVTNVTPAR 664


>gi|299144111|ref|ZP_07037191.1| PPIC-type PPIASE domain protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518596|gb|EFI42335.1| PPIC-type PPIASE domain protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 253

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 70/157 (44%), Gaps = 5/157 (3%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +  + +  S  E++  Y  N E Y  P       ++  ++ +A+E +  +  G+ F +LA
Sbjct: 87  KLLENVSPSEKEIEEFYNANAEHYDVPNSVDASHILVEDENKANELYNKILAGENFEELA 146

Query: 301 EEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +         +  +LG F    +      + +FS+ K+G+ +  +  +FG+ I  ++ I 
Sbjct: 147 KNNSMCPSKNNGGNLGVFHSGQMV-REFDEKVFSM-KEGEISEPVKTNFGFHIIKLNKII 204

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           PS   +  EV+ D+  +++  K  +      + L + 
Sbjct: 205 PSKKHTLSEVRDDVIKEVKRYKEQKIYMNKIRELSQK 241


>gi|42523892|ref|NP_969272.1| hypothetical protein Bd2456 [Bdellovibrio bacteriovorus HD100]
 gi|39576099|emb|CAE80265.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
          Length = 345

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 85/223 (38%), Gaps = 7/223 (3%)

Query: 1   MLEIIRK--ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
           M + +++   +++  A +    + + F+ +G+   + +  GS  V  V    +  + F  
Sbjct: 5   MADKMKRGINAKSVTAMVIFGAIIMVFVFFGMPGQMGAGVGS--VARVNNTLISLADFQQ 62

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
              +         G  ++    R + L ++ L+NLV    + Q  +  G+ A    V   
Sbjct: 63  EENRIQQYYQNLFGNQMDFGSQRQL-LRQQALENLVRMELVSQAAQKSGILATDAEVRDF 121

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I +   F  ++  F  D ++  + +       + D   K +S      +F    +P+ + 
Sbjct: 122 IVKDIPFFQQNGMFQKDFYMRYIEQTRTTPANFEDKVRKDISNVRTRALFELATQPTAVE 181

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPA--IADPSNAVLTQWFEK 219
           L + +       +V ++ +++         + ++A +    E 
Sbjct: 182 LKKIQDLRAAKINVLFVKIDSEAATKALTKEKADAAIKALDEA 224


>gi|325846702|ref|ZP_08169617.1| putative peptidylprolyl isomerase PrsA1 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481460|gb|EGC84501.1| putative peptidylprolyl isomerase PrsA1 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 345

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 112/357 (31%), Gaps = 104/357 (29%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  VG +K+   S    +K E+   S  +        A    L   I+  L+    +
Sbjct: 48  KDAVAVVGGEKISKES----YKDEMSFYSAML--------ASQQQLKPSIVQMLIQDKLI 95

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
              ++   ++ D   +  +  +         +   + F   L    ++  ++ +   K  
Sbjct: 96  ADDMKKNDVKVDDKELNDKFLQ--YIQQFGGQ---EKFDKMLEDYNMSSDKFKETIKKD- 149

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                                   + Y ++R                  S+  + +++++
Sbjct: 150 ------------------------QIYQKHRE---------WFEKKNPVSDKDIKKYYDE 176

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +KD                                                    ++  +
Sbjct: 177 HKDTL-------------------------------------------AQVKASHILVED 193

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKK 335
           +  A E  + L  G+ F +LA+E  K          LG F+K+ +     AD  F++ KK
Sbjct: 194 ENTAKEVKKKLDDGEDFAKLAKEYSKDTANSAKGGDLGYFTKDKMVK-EFADKAFAM-KK 251

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           G+ +  +  S+GY I  V + K +       +K++I+  +   K ++ + + + +  
Sbjct: 252 GEISDPVKTSYGYHIIKVEDKKDNP----DALKEEISKALNDKKYADYLTDLFNKAN 304


>gi|315224705|ref|ZP_07866528.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea F0287]
 gi|314945333|gb|EFS97359.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea F0287]
          Length = 705

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 94/605 (15%), Positives = 204/605 (33%), Gaps = 78/605 (12%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           LE IR  S+T      + +    F+I   +    FS    + + SV  ++VP  +F    
Sbjct: 4   LEKIR--SKTVFLIAIIGLALFAFIISDFIGKGRFSNHTPNEIGSVNGEEVPIDAFRQQV 61

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +       Q  G V + E A+       + +  V    L+Q IE +GL  +  ++   +A
Sbjct: 62  EN---ATRQANGQVSSIEAAKY------VWEQNVQQILLNQQIEKLGLSVEKDQILAILA 112

Query: 121 RSPLFHGKD-----NKFSHDVFVSRLARE-GINEKEY------IDHYTKMLSRTDVVGMF 168
           ++PL            F  + F + LA     N + Y       +   +   +     + 
Sbjct: 113 KTPLAQNPQFVNEYGVFDANKFTNYLATLKNTNPQAYAQWKMQEEAIIEDAKQRMYFSLI 172

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAP 227
             G+  +N   +       +   + Y+ L    +       +++ +  + +K++  ++  
Sbjct: 173 RAGLGVTNTEAEMEYHQEKDLADISYVALQYSSIDDKSVKVTDSEIQDYIKKHEKQFKQE 232

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
            Y+ I YI+      +  IE   + L         K   PE+    +    N+ +    F
Sbjct: 233 AYRNIQYIVVSEKPSQTDIETEKESL--------LKLLQPEVVFNSK---TNKNDTIAGF 281

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
              K  K F+    +     + ++  +         S AD++F+L   G           
Sbjct: 282 AKTKNIKDFVDRHSDVPYDSTFVNKDNLR------SSYADTLFNLP-VGKVFGPYQEDGS 334

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE---------KVKEDYKRLEEFLALG 398
             ++ +   +P   V        I      ++A+             +  + L +    G
Sbjct: 335 LKLSRMIAKQPGGAVK----ASHILIAYAGSQAATPNTTRTKEEAKAKAEELLAQAKVAG 390

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
               +++R        +      G   KG  V          F  F  ++ +     V  
Sbjct: 391 ADFAQLARENSEEPGAVYSAGDLGFFSKGAMVKP--------FEEFAFNNAVGTIGLVET 442

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK---TVKTAEEVSSKANQLVLEYSKEGK 515
            D  +  V++ +          E +       K   +  T   + SK     ++ ++  K
Sbjct: 443 -DFGFHVVKVTDK--------AEAVNIATISRKVDPSEATINSLFSKVTNFEMKAAQNPK 493

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVV 573
            F ++ K    S+L  + +++ D++    G     +  +F    ++       +G +Y+V
Sbjct: 494 EFANVAKKSELSVLRADNLHKNDDQIIGLGSNRSIVQWLFQKDTKIGDIKKFTSGGNYIV 553

Query: 574 FKVTN 578
            ++  
Sbjct: 554 AQLVK 558



 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 115/341 (33%), Gaps = 34/341 (9%)

Query: 288 QSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           Q+   G  F QLA E  +      S   LG FSK  +      +  F+    G    ++ 
Sbjct: 385 QAKVAGADFAQLARENSEEPGAVYSAGDLGFFSKGAMVKP-FEEFAFN-NAVGTI-GLVE 441

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-EKVKEDYKRLEEFLA-LGTSM 401
             FG+ +  V++   +  +        I+ ++  ++A+   +       E   A      
Sbjct: 442 TDFGFHVVKVTDKAEAVNI------ATISRKVDPSEATINSLFSKVTNFEMKAAQNPKEF 495

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
             ++++ ++  +    +          ++  +     ++  +F KD  +  D       G
Sbjct: 496 ANVAKKSELSVLRADNLHK-----NDDQIIGLGSNRSIVQWLFQKDTKIG-DIKKFTSGG 549

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
           +Y+  Q+ +        +++    VK      K A  +  KA         +G +   I 
Sbjct: 550 NYIVAQLVKQGEEGISSVQDAAPMVKPILIREKKAVILKEKA---------KGNSLEAIA 600

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
                 + +   +   +      G +   +   F      +   PI+   +  V ++T++
Sbjct: 601 SANKTEVKSAANLIMKNPTIIGEGREPKVVGAAFGLKQGQL-SKPIDGENAVYVIQLTSA 659

Query: 580 KVGPV-QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
            V P       +   + ++        ++  L+S  ++  +
Sbjct: 660 TVAPALDNYKTYAETVEKLRTDRAAQGILKSLESTATIKEN 700


>gi|319957104|ref|YP_004168367.1| ppic-type peptidyl-prolyl cis-trans isomerase [Nitratifractor
           salsuginis DSM 16511]
 gi|319419508|gb|ADV46618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitratifractor
           salsuginis DSM 16511]
          Length = 287

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 102/235 (43%), Gaps = 18/235 (7%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD-------PSNAVLTQWFEK 219
             V G + +   ++   R    N+ + Y +L+ +    + D        + A      EK
Sbjct: 26  AVVNGHKITKAEVNTFLRQSMPNQPITYDMLDPKTKKKVLDGLIETEILAEAAQKAGVEK 85

Query: 220 YKD-NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             +        K+   I     ++ KKI +S  E +  Y+K+++K+  P       ++  
Sbjct: 86  NPEFQQMLDMAKKKLMINAWAKDEFKKIIVSESEAKEFYQKHQDKFTRPAQVHARHILVK 145

Query: 279 NQKEADEAFQSLK--KGKK----FIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSI 329
           ++K+A E    LK  KG+     FI+LA+++           LG F K+ +  +  + + 
Sbjct: 146 SEKKAQEIIDQLKGLKGEALQKRFIELAKKESTGPTGPKGGDLGYFGKDQMV-LPFSKAA 204

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
           F+L K    T  +   FG+ + +V + KP+ T+ F  VK  +   ++  + +EK+
Sbjct: 205 FALNKGEITTKPVKTQFGWHVIYVEDKKPAQTIPFDAVKDRVIAALKQQRFAEKM 259



 Score = 38.8 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 13/155 (8%)

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLVDFAGKDVKGKEVAA 432
           ++  K ++++ +  K L+   AL     E++++E           + + GKD        
Sbjct: 144 VKSEKKAQEIIDQLKGLKGE-ALQKRFIELAKKESTGPTGPKGGDLGYFGKDQ-----MV 197

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
           +P+        F  +        V    G ++   +++  PA+    + V   V    K 
Sbjct: 198 LPFS----KAAFALNKGEITTKPVKTQFGWHVIY-VEDKKPAQTIPFDAVKDRVIAALKQ 252

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
            + AE++  +   L  + S   +      +   + 
Sbjct: 253 QRFAEKMKKETELLKKKASITIEGAEKAAEETPSK 287


>gi|254520524|ref|ZP_05132580.1| peptidylprolyl isomerase [Clostridium sp. 7_2_43FAA]
 gi|226914273|gb|EEH99474.1| peptidylprolyl isomerase [Clostridium sp. 7_2_43FAA]
          Length = 325

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 51/388 (13%), Positives = 110/388 (28%), Gaps = 90/388 (23%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVS----GSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
           + KI        F    +   +   +     ++ +  VG  K+            L    
Sbjct: 4   IKKIIAAGALSIFAFSAVGCEMIQKTPEAIKNTVLAKVGDVKITKGEVDEIADPYLQQYG 63

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR-SPLFHG 127
                  N    +   L  + ++ LV    + +  E++G+      V  E+ +       
Sbjct: 64  SDYDTNPNMAE-QVKALRTQAINLLVEEKMMLKKAEELGVTPTKEEVDSEVQKYIESLKE 122

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
                  + F + L + G+   EY    T+ +                            
Sbjct: 123 SYGG--DEQFNAALEQAGMTLDEYTTKLTESMKNKLATEKVT------------------ 162

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
                         +    + ++  +  ++E+ KD++                       
Sbjct: 163 ------------EDLFKDVNITDEDIKAYYEENKDSF----------------------- 187

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
                                    E +V  ++ +A E  + +  G+ F  +A+E  +  
Sbjct: 188 --------------------GEANAEHIVVSDEAKAKEIRERIINGEDFATVAKESSEEP 227

Query: 308 ----SDISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
               S  +LG         D      + +L K+G+ +  +   FGY I   + +K     
Sbjct: 228 AAAESGGNLGVIKFNTTEYDQDFVAGLKAL-KEGEISEPVKSQFGYHIIRATKVKQG--- 283

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390
           +F EVK  I   +   K +E      ++
Sbjct: 284 TFDEVKDSIKTTLENQKKNEIYSSSIEQ 311


>gi|302036376|ref|YP_003796698.1| putative peptidyl-prolyl cis-trans isomerase D (fragment)
           [Candidatus Nitrospira defluvii]
 gi|300604440|emb|CBK40772.1| putative Peptidyl-prolyl cis-trans isomerase D (fragment)
           [Candidatus Nitrospira defluvii]
          Length = 232

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 69/189 (36%), Gaps = 9/189 (4%)

Query: 1   MLEIIRKASRT--WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
           M++++R+A+    W  K  + +L + F+I  +    F  S  + V SVG Q VP   +  
Sbjct: 1   MIKLLREAAHDYPWFLKSIMGLLALAFVIT-MGWWGFGQSSGNVVASVGDQVVPLDEYRR 59

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           +++        K          +   L + +L+ L+         +++GL      +   
Sbjct: 60  AYENTYRFYKDK-----GQNDIKDEFLKQFVLEQLIDNRMWLHVAKEMGLTVSDEDLRKA 114

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I +   F  K+  F  D +   L+   +    +     K +       + +  +  +   
Sbjct: 115 IMQRTEFQ-KNGSFDPDAYKRLLSANRLTPASFEAMEAKDILTNKARLVIMDAVALTPAE 173

Query: 179 LDQAKRFYF 187
             +A+    
Sbjct: 174 YTEAQTLAA 182


>gi|322807863|emb|CBZ05438.1| foldase protein PrsA precursor [Clostridium botulinum H04402 065]
          Length = 336

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/395 (13%), Positives = 121/395 (30%), Gaps = 86/395 (21%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQEL 64
           K+++  ++ + L +  + F    + +        ST+  V  +K+       S   +Q L
Sbjct: 2   KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQVL 61

Query: 65  GMISQKIGFVVN-SERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
             I  + G     SE+ +       K++L+NL++   L Q  +++ +      +  E  +
Sbjct: 62  SQIKTQYGEEFEKSEQGKEVIKEQKKQVLENLITEKVLLQKGKELKVIPKDEELNKEADK 121

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
                          F   L   G  ++   ++    +    V+                
Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVIN--------------- 166

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA-PEYKRISYILFDVH 240
                               V       +    +++ + +  +   P    +S+IL    
Sbjct: 167 -------------------EVTKDVKVEDKDAQKYYNENQSMFTEKPNTMNVSHIL---- 203

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                                                  + EA +  + L   + F ++A
Sbjct: 204 ------------------------------------VKTEDEAKKVKKRLDAKEDFAKVA 227

Query: 301 EEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +E  +       G         +   D +   +  +L K+G  +  +H  +GY I  V++
Sbjct: 228 KEVSQDPGSKDKGGLLGDINYNDANFDPTFMKAAIAL-KEGTISNSVHTQWGYHIIKVNS 286

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            K      F  VK+DI  Q++  K  E   +  + 
Sbjct: 287 KKEYPVKKFDSVKEDIKKQLKQEKQQEAYTKKIEE 321


>gi|78222152|ref|YP_383899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
 gi|78193407|gb|ABB31174.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
          Length = 330

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 100/345 (28%), Gaps = 82/345 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMIS---QKIGFVVNSERARSVGLDKKILDNLVSG 96
              V  V    +    + N+ +  L  ++   +  GF  +  +       KK L +L+  
Sbjct: 36  GKVVARVNGVPI----YENALQSHLAALANKGRASGFARDPAKMNDYQ-KKKALYSLIDA 90

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHY 155
             L Q      +     +V   +           KF   + F+  L   G     ++   
Sbjct: 91  ELLRQASNQQQVTDLDAKVSKRL------QEVKGKFPDEEAFLKNLQARGKTLDIFVAEL 144

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
                                               + Y               +  + +
Sbjct: 145 RD---------------------------------GIRYDEYLTSKKVIGVPVPDEEIQK 171

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++     ++  PE  ++ +IL +      +                              
Sbjct: 172 FYRDNPTSFSVPEQIKVRHILIEPDGSTAEA----------------------------- 202

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSL 332
           V   +K+A E    + + K F  +A+E      + S   LG  S+  +P        FSL
Sbjct: 203 VAKAEKKAGEIRNRVVRDKDFAAVAKEVSACSTASSGGDLGYVSRGTMP-AEFDKVAFSL 261

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
            K  + +  +   FG+ I  V + KP     + EV++ I+  ++ 
Sbjct: 262 -KLNEVSEPVRTKFGFHIMEVLDKKPVTVRPYSEVREFISRYLQR 305


>gi|256545093|ref|ZP_05472459.1| PPIC-type PPIASE domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399134|gb|EEU12745.1| PPIC-type PPIASE domain protein [Anaerococcus vaginalis ATCC 51170]
          Length = 248

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 4/152 (2%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           +H+  + IE+S++E++  Y+ NKE    P+      ++  +++ A      +  G  F  
Sbjct: 86  MHKLFESIEVSDEEIKNYYDNNKEVVKKPKSYRASHILVDDEESAKNILNEINDGLSFED 145

Query: 299 LAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            A +  K        LG F K  +      +++  L + G+ +  +   FGY I  + + 
Sbjct: 146 AANKYSKDNGSKNGDLGEFPKGTMVK-EFEEALDKLGE-GEISKPVKTQFGYHIIKLDHT 203

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
              +   F E+K  I + + + K  EK  E  
Sbjct: 204 HDEYLPEFDEIKDRIHDTLLMIKRQEKYLEKT 235


>gi|218960354|ref|YP_001740129.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor
           [Candidatus Cloacamonas acidaminovorans]
 gi|167729011|emb|CAO79922.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor
           [Candidatus Cloacamonas acidaminovorans]
          Length = 418

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/474 (14%), Positives = 149/474 (31%), Gaps = 93/474 (19%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  VG   +  S       Q      Q +G              + +LD +++   + Q 
Sbjct: 26  VAKVGTDIILLSDLQKEMVQM-----QSVG------LLEEDTDPRDVLDEMINQKLIIQK 74

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSR 161
            +D+ +  +   +   +           ++ S   F + L +  + E + +  Y  +L+ 
Sbjct: 75  AKDLNITVNDEEIK--VMAENYLKKVKAQYPSSSAFAADLKKSKLTESDLLQLYRDILTE 132

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
             +    +                              + +      + A +  ++   K
Sbjct: 133 QALSDQIL-----------------------------KKEIINKVSVTEAEVINFYNATK 163

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           D+                      ++  + +L   + + K    S E +  E        
Sbjct: 164 DSL--------------------AVKPVSWDLGIIFREIKPNQKSKEAKLAEI------- 196

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
              E    LK G+ F  LA  +    S      LG F +  +      D+ F+L + G+ 
Sbjct: 197 --KEIQTRLKNGEDFATLASTESDCPSKEVGGDLGFFKRGQMVKP-FEDAAFAL-QLGEI 252

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY--KRLEEFLA 396
           + ++   +GY I  +   +        E++     +     A + ++E    + +    A
Sbjct: 253 SDIVESEYGYHIIRLEEKRG------NEIRARHILKALTPTAEDSLRERQLMEEIRNRYA 306

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
            G S   ++R   +           G+  +        +  Q+L    G+  P+ ++  +
Sbjct: 307 KGESFASLAREYSMDQESREDGGSLGEFTERD--LPSLFATQILQTPVGEMTPVLENQGM 364

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
                 Y++ ++KE  P R  K EEV    ++     K  +  ++    L  E 
Sbjct: 365 L-----YIFCRLKEY-PPRIYKYEEVKDQAREMVLKRKQIDAFNAWIENLRREA 412



 Score = 37.3 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 85/256 (33%), Gaps = 25/256 (9%)

Query: 371 IANQMR-ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
           I  +++   K+ E    + K ++  L  G     ++  E        +    G   +G+ 
Sbjct: 178 IFREIKPNQKSKEAKLAEIKEIQTRLKNGEDFATLASTESDCPSK-EVGGDLGFFKRGQM 236

Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK---LEEVLTDV 486
           V      E   F +      L +   +   +  Y  ++++E      R    L+ +    
Sbjct: 237 VKP---FEDAAFAL-----QLGEISDIVESEYGYHIIRLEEKRGNEIRARHILKALTPTA 288

Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN-QINRMDNENKFFG 545
           +   +  +  EE+ ++          +G++F  + +       +     +  +   +   
Sbjct: 289 EDSLRERQLMEEIRNR--------YAKGESFASLAREYSMDQESREDGGSLGEFTERDLP 340

Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV---GPVQEKDKFISYLTQMMNKDL 602
               +Q+   PV  +       G+ Y+  ++           + KD+    + +    D 
Sbjct: 341 SLFATQILQTPVGEMTPVLENQGMLYIFCRLKEYPPRIYKYEEVKDQAREMVLKRKQIDA 400

Query: 603 LDSVIAYLKSQYSVTV 618
            ++ I  L+ +  V +
Sbjct: 401 FNAWIENLRREAYVQI 416


>gi|312128222|ref|YP_003993096.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778241|gb|ADQ07727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 335

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/385 (15%), Positives = 126/385 (32%), Gaps = 86/385 (22%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM--IS 68
           +  A + L++L          + +  V  +  V  V  +K+    F  +++ ++    + 
Sbjct: 11  SIAAVVLLIILIAV-----TPEIVRYVDENRAVAIVNGEKITKKEFAINYRSQINYYGLD 65

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
           +        ++     + + +L+ L+      Q      +            +      K
Sbjct: 66  KAFLSQKVGDKTYEQQIKENVLNGLIIRQIELQQARKRNITLTAAEKKAIDQQIQ--QYK 123

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
            +  S   F   L   G  E EY D       ++ +V                       
Sbjct: 124 SDSQSGAEFKQYLQTIGATENEYKDQV----IKSQIVSKLY------------------- 160

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
                        V      ++A +  ++  +K ++      + S+ILF V++       
Sbjct: 161 -----------DEVTKNQKATDAEIESYYNSHKSDFVE---VKASHILFKVND------- 199

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-- 306
                                    +     +K+A+E  Q +K G+ F +LA++  +   
Sbjct: 200 ------------------------SKEEATKKKKAEEILQMIKDGQNFEKLAQKYSEDET 235

Query: 307 --LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F K  +      D+ FSL   G+ + ++  S+G+ I  V++ K    +S 
Sbjct: 236 TKQKGGDLGYFRKGQMVK-EFEDAAFSL-NIGEISSIVKTSYGFHIIKVTDRK---QLSL 290

Query: 365 QEVKKDIANQMRITKASEKVKEDYK 389
            EVK +I + +   K  E  +   +
Sbjct: 291 NEVKDEIKSTIESQKKDEYYQSLLE 315


>gi|258510728|ref|YP_003184162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477454|gb|ACV57773.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 314

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/399 (11%), Positives = 110/399 (27%), Gaps = 113/399 (28%)

Query: 19  VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
             L V  + +G      +  G S V  VG+  +                    G      
Sbjct: 16  GALVVGGVWFG---TYAAHGGGSVVAMVGKTPITRQELAQ-------QSEAYAGSA---- 61

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
                     +L+ L++ A ++Q      + A +  +  ++    +   ++   S     
Sbjct: 62  ----------MLEELIANALIEQAAAKQHVTATNAEINQQLTAIEM---QNGITSDAQLN 108

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
           S LA+  + + ++++     +  + +                                  
Sbjct: 109 SLLAQNHMTKAQFLNQIRDNILASKLAEA------------------------------- 137

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
                     ++  +  ++++    +  PE ++I                          
Sbjct: 138 ------QVHVTDKQIASYYKQNASMFTVPETRKI-------------------------- 165

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
                           +    + +A++A   ++ G  F  +A+      +  S G     
Sbjct: 166 --------------AIIAVKTKADAEKALTEIQSGTPFASVAKSVSIDAATRSKGGLLGT 211

Query: 319 Y------IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           +        D ++A + F+L K G  +  +    GY I     I P        V+  I 
Sbjct: 212 FSLDELKAGDPAIASTAFAL-KAGAVSDPVKVQGGYDIVQCQAITPQHVEPLSAVRSQII 270

Query: 373 NQMRITKASE--KVKEDYKRLEEFLALGTSMDEISRREK 409
             ++   A    K+     +  +   L  S + +    K
Sbjct: 271 QAIKQQNAESETKLVAQLAKSADIRILDPSYEAVLTAIK 309


>gi|56419191|ref|YP_146509.1| post-translocation molecular chaperone [Geobacillus kaustophilus
           HTA426]
 gi|81675918|sp|Q5L289|PRSA_GEOKA RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|56379033|dbj|BAD74941.1| post-translocation molecular chaperone [Geobacillus kaustophilus
           HTA426]
          Length = 281

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 80/200 (40%), Gaps = 26/200 (13%)

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP---------EYK---RISYILFDVHEKE 243
           +++ + +      ++  + +  E+ K+ Y            E      +   L       
Sbjct: 56  LIDEKVLSKKYKVTDEEIDREIERIKEAYGTQYDLAVQQNGEKVIREMVKLDLLRTKAAV 115

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           + I+++  EL+  Y+  K K           ++  ++K A E    L KG+ F +LA+E 
Sbjct: 116 EDIKVTEKELKEYYDNYKPKI------RASHILVKDEKTAKEVKAKLDKGEDFSKLAKEY 169

Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            +          LG F    +      ++ + L K G+ +  +   +GY I  V++ +  
Sbjct: 170 SQDPGSASNGGDLGWFGPGKMVK-EFEEAAYKL-KVGEVSDPVKTDYGYHIIKVTDKE-- 225

Query: 360 FTVSFQEVKKDIANQMRITK 379
              SF E+K +IA +++  K
Sbjct: 226 KKKSFNEMKDEIAFEVKRNK 245


>gi|227485003|ref|ZP_03915319.1| possible peptidylprolyl isomerase PrsA [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237000|gb|EEI87015.1| possible peptidylprolyl isomerase PrsA [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 343

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 19/258 (7%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
           SR ++    V  M    L+ D  K    E  ++ V+   LN+       +  + +L   +
Sbjct: 73  SRQNLKNSIVQMMVQDKLIADDMKANKIEISDKEVNDAFLNSVKQFGGQEQFDKMLDD-Y 131

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
               + ++    K + Y        EK+  ++ +E++  YE NK+K+     R    ++ 
Sbjct: 132 NMDVEKFKETVKKDLMYKKHREW-FEKEHPVTEEEIKQYYEDNKDKFA---KRDASHILV 187

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLA 333
            ++K A E    L KG  F  LA+E  K      +   LG+FS+  +      D+ FSL 
Sbjct: 188 ADEKTAKEVKDKLDKGADFAALAKEYSKDTANAANGGELGTFSRGQMVK-EFEDAAFSL- 245

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           K+G+ +  +   FGY I  V+ I      S ++ K+ I   +   K S+ +KE  K+   
Sbjct: 246 KEGEISGPVKTQFGYHIIKVNKI----ADSIEDNKEAITKALNDKKYSDYIKELNKKAN- 300

Query: 394 FLALGTSMDEISRREKIV 411
            +    ++ E    EK  
Sbjct: 301 -VVTEATIAEKKEAEKAT 317


>gi|18311465|ref|NP_563399.1| peptidylprolyl isomerase [Clostridium perfringens str. 13]
 gi|46396974|sp|Q8XHK0|PRSA_CLOPE RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|18146149|dbj|BAB82189.1| probable protein export protein [Clostridium perfringens str. 13]
          Length = 342

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 118/393 (30%), Gaps = 87/393 (22%)

Query: 9   SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
            +  VA   + VL    +   + +   +    +TV +V  +K+      +  K     + 
Sbjct: 4   VKKIVASALVGVLMFSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFAQMK 63

Query: 69  QKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
            + G     +   +  +    + ++  LV+   L    + +G++     +  ++     F
Sbjct: 64  SQYGDKYMDDPQVAQQILQQRQSVVQGLVTDKVLGIEADKLGIKPSEEEIKKKV--DEQF 121

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
                    D F   L  EG  E  + D     +    V    +                
Sbjct: 122 ENIKKGM-GDNFDKALEAEGYTEDTFKDVIKNQVINQAVQDYII---------------- 164

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
                                  ++    +++++ K  + A +   ++            
Sbjct: 165 ------------------KDVKVTDEDAQKYYDENKQQFVAKDSGVLT------------ 194

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLA---- 300
                                      + L+F N++EA +A+  ++ GK  F  L     
Sbjct: 195 ---------------------------KHLLFENEEEAQKAYDEIQSGKTTFNDLFTKYQ 227

Query: 301 --EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI-K 357
             + + K     +LG    E    V          K+G+ +  I   FGY I       +
Sbjct: 228 NNKSENKKPIAENLGVVPAENSGLVQEFVDGLKPLKEGEISKPIKTQFGYHIIQAGATYE 287

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
               + F EVK  I   ++  K SEK K D  +
Sbjct: 288 KGAQLPFDEVKSQIIQILKQQKDSEKFKADMDQ 320


>gi|77917708|ref|YP_355523.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus
           DSM 2380]
 gi|77543791|gb|ABA87353.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus
           DSM 2380]
          Length = 307

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 104/270 (38%), Gaps = 34/270 (12%)

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
           +++   + ++L R  V+                 +R Y   R +D+ +L           
Sbjct: 42  EQFQHDFAQILPRDRVL---------PKDEEQALRRSYLAQR-IDHELLLAEATRRKLSV 91

Query: 209 SNAVLTQWFEKYKDNY-------------------RAPEYKRISYILFDVHEKEKKIEIS 249
           + A L Q    + D Y                   +    +++            K++I+
Sbjct: 92  TPAELQQAIASHLDRYPSGDFERMLADQGLAVEDWQRLLQEQLLVEKVLALMVRDKVDIA 151

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS- 308
           ++E+ A +  +++ +  PE     Q+  P++ +  +A + L++G  F ++A     S   
Sbjct: 152 DEEINAYFAAHRQSFARPEQVKARQITVPDEAQGRQALEMLRQGTPFAEVARRCSISPDA 211

Query: 309 --DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
                +G+F++  +P+ +   ++F L   G  + +    +GY I  V    P+       
Sbjct: 212 DQGGDMGTFARGEMPE-AFDKAVFGLP-AGRISDLTESDYGYHIFLVEQHLPARPPDLDT 269

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           V+ +I  Q+R  +  +  ++  + L +  A
Sbjct: 270 VRGEIVAQLRKQQEEQLYQDWLQSLRQEAA 299



 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
           +  E L  GT   E++RR  I   D       G   +G+   A          VFG    
Sbjct: 187 QALEMLRQGTPFAEVARRCSISP-DADQGGDMGTFARGEMPEAFD------KAVFGLPAG 239

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
              D T +  D  Y    +++ +PAR   L+ V  ++    +  +  +        L  E
Sbjct: 240 RISDLTES--DYGYHIFLVEQHLPARPPDLDTVRGEIVAQLRKQQEEQLYQDWLQSLRQE 297

Query: 510 YS 511
            +
Sbjct: 298 AA 299



 Score = 37.3 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 38/121 (31%), Gaps = 5/121 (4%)

Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
            LE  ++G  F ++ +    S       +                VF  P   +      
Sbjct: 188 ALEMLRQGTPFAEVARRCSISPDADQGGDMGTFARGEMPEAFDKAVFGLPAGRISDLTES 247

Query: 567 NGLSYVVFKVTNSKVGPVQEKD----KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
           +   Y +F V         + D    + ++ L +   + L    +  L+ + ++ +   L
Sbjct: 248 D-YGYHIFLVEQHLPARPPDLDTVRGEIVAQLRKQQEEQLYQDWLQSLRQEAAIEIDWTL 306

Query: 623 I 623
           +
Sbjct: 307 M 307


>gi|319653565|ref|ZP_08007664.1| hypothetical protein HMPREF1013_04281 [Bacillus sp. 2_A_57_CT2]
 gi|317394764|gb|EFV75503.1| hypothetical protein HMPREF1013_04281 [Bacillus sp. 2_A_57_CT2]
          Length = 292

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/380 (11%), Positives = 112/380 (29%), Gaps = 109/380 (28%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K+   +L     I   +   F++       +V  +++               +  + G  
Sbjct: 5   KVIYWILGSVVTIGAAAAIFFTIKEDDAAATVNGEEISRDEL-------HERLVAQYG-- 55

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
                       +++LD+L++   +DQ  +   ++     +  E     ++         
Sbjct: 56  ------------QELLDSLITEKVIDQEAKKENVKVTQEEIDEE---KAVYAESYGGED- 99

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
                 L   G++  ++ +     L+   ++                             
Sbjct: 100 -ALKQTLESSGLSMADFEEDIESYLATKKLLEP--------------------------- 131

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
                       + S   +  +F++ K+++   E    S                     
Sbjct: 132 ----------RIEISEEAMKTYFDENKESFAQEEQVSAS--------------------- 160

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
                               ++  +++ A E    L  G  F +LA E     S      
Sbjct: 161 -------------------HILVEDEETAKEVIGKLNDGGDFAKLAAEYSTDESNKDAGG 201

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F K  + +    +  FSL + G  +  +   +GY +  V+  + +   ++++VK++
Sbjct: 202 DLGFFGKGDMVE-EFEEVAFSL-EPGKISDPVKTEYGYHVIKVAEKQEAKEAAYEDVKEE 259

Query: 371 IANQMRITKASEKVKEDYKR 390
           + N +  T+   +     + 
Sbjct: 260 VKNTLFETEMQTEYTAWLEE 279


>gi|302325773|gb|ADL24974.1| PPIC-type PPIASE domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 671

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 86/664 (12%), Positives = 199/664 (29%), Gaps = 61/664 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  I + ++ WV  IF   + +  L     D +     S  +  V   K+ ++ F +  
Sbjct: 29  MLTWINEKAK-WVIVIFAAGIAIGLLAM---DRVPDQGRSYPIGIVNDTKISYTDFDSRV 84

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           K  +   +Q     ++ E+     L  ++  + V  A   +  E   L A    +  E  
Sbjct: 85  KMIVQ--NQYQNQHLDDEQ--YSQLRAQVFSSFVRQALFAEQYEKAELSASVAELKNE-- 138

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F    +       V          ++       ++ R+      +           
Sbjct: 139 ----FKRNSDAV-RARLVQEAQARLYAIQQQATSQEDLIQRSQAYLASLPKFLTDTTFNK 193

Query: 181 QAKRFYFEN-RSVDY-IVLNNRHVPAIADPSNAVLTQWFEK--YKDNYRAP---EYKRIS 233
                + E   +  +  +L+              L        +  +  A    E +   
Sbjct: 194 ADYDAWIETPAAYRWSAMLSLEDEMKNNSIPARQLQTLVGASVHPTSLEAKWSVERRMTD 253

Query: 234 YILF-----DVHEKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEA--DE 285
           Y L                + +  +   +  + + +F   +    + +  P +  A  D 
Sbjct: 254 YELQVAVAPSSAFVVDSNSVDSVMVAGYFNAHIDSFFVQKDAAQFQYVSIPVEATAGDDA 313

Query: 286 AFQSLK-----------KGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-----VSLADSI 329
           + +                  F  +A    +       G    E             ++ 
Sbjct: 314 SIREYAMTLYYQLTDSSSTTTFEDMARVSSEDPGSAEKGGILSEDFVGRGSYVKPFEEAA 373

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           F+L   G  +  +   FGY I        +     ++VK  + + +    AS    +  +
Sbjct: 374 FALDS-GKISEPVRSQFGYHIIKSYGNVKNAKGEVEKVK--VGHILLTVTASSNTIDSLE 430

Query: 390 R-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
           + L        +  ++    +   +++   ++  +D     + A  Y + L    +  ++
Sbjct: 431 KILTNIKKDVDAGSDLLTEAQARGLEVKTSEWVSRDGN---IGAFGYLKGLASFAWPNEN 487

Query: 449 PLSKDHTVA--LPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
              ++  ++  L +  ++ + +   S  A +R L     D+K+     K  +   +  + 
Sbjct: 488 LPKEESEISGVLRNNKWVVIAKKIGSFTAGERSLPLYYNDIKETLLKQKAGKAAEAYLSS 547

Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
           +  +  KE        K     L T N           +G   I++V           P+
Sbjct: 548 VAAQ-VKEWNPADTAAKIEKVELETKNASVDGFVPGFGYGNAQIARVVGKAKAGEWTAPV 606

Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK----DLLDSVIAYLKSQYSVTVHDN 621
                 V+ KV + K   V+E ++ I        +       +  +  L++   V  + +
Sbjct: 607 VAENGAVMVKVVSKKTPKVEEVEEAIKQDVDNSYRFGVMTAFNDYVTSLEASTPVKSNLD 666

Query: 622 LIQR 625
           L  R
Sbjct: 667 LFYR 670


>gi|225874673|ref|YP_002756132.1| peptidylprolyl cis-trans isomerase SurA, putative [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793602|gb|ACO33692.1| peptidylprolyl cis-trans isomerase SurA, putative [Acidobacterium
           capsulatum ATCC 51196]
          Length = 588

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 114/361 (31%), Gaps = 81/361 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK---ILDNLVSG 96
              V  V  Q +  S +  +         Q +      +      LD++   +L NL+  
Sbjct: 62  EQIVARVDDQVIDTSDYERA--------EQDLKQQAQQQNMSQAELDREKKDLLRNLIDQ 113

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             L    + +G+  +       + R      +++  S       +  +G++ +++     
Sbjct: 114 QLLLAKGKQLGITGED----QLVERLDAIRKQNHLDSMTALQQAVESQGLSWQDFKQQIR 169

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             +    V+                                    V      S   + ++
Sbjct: 170 NNIITQTVIRQ---------------------------------KVAPTIRISPDEIQKY 196

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           ++++K  +  PE  R+S IL      +   +++                           
Sbjct: 197 YDQHKKEFDRPEEVRLSEILIPTPNPDDAAQVAEA------------------------- 231

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLA 333
              +K+AD     LK G  F +LA+       +     LG F K  +    L ++ F L 
Sbjct: 232 ---KKKADGIEAQLKAGGDFAKLAKSDSTGPTAPQGGDLGDFQKGQLA-PELENATFPL- 286

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           KKG FT  I    G++I  V++ + +      +V+  I N +   K    ++    +L  
Sbjct: 287 KKGQFTEPIQTKQGWIILEVTHHQDAGLAPMNQVETQIENAVGYNKMQPALRAYLTKLRN 346

Query: 394 F 394
            
Sbjct: 347 E 347


>gi|138894238|ref|YP_001124691.1| protein export protein prsA [Geobacillus thermodenitrificans
           NG80-2]
 gi|196251144|ref|ZP_03149822.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           G11MC16]
 gi|226712005|sp|A4IKU2|PRSA_GEOTN RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|134265751|gb|ABO65946.1| Protein export protein prsA [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209342|gb|EDY04123.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           G11MC16]
          Length = 278

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 82/200 (41%), Gaps = 26/200 (13%)

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP---------EYK---RISYILFDVHEKE 243
           +++ + +      ++  + +  E+ K+ Y            E      I   L       
Sbjct: 56  LIDEKVLSKKYKVTDEEIDREIERIKEAYGTQYDLAVQQNGEKVIREMIKLDLLRAKAAI 115

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           + I++++ EL+  Y+  K K           ++  ++K A E    L KG+ F +LA+E 
Sbjct: 116 EDIKVTDKELKEYYDNYKPK------VRASHILVEDEKTAKEVKAKLDKGEDFAKLAKEY 169

Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            +          LG F    +      ++ + L K G+ +  I   +GY I  V++ +  
Sbjct: 170 SQDPGSASNGGDLGWFGAGKMVK-EFEEAAYKL-KVGEVSDPIKTDYGYHIIKVTDKE-- 225

Query: 360 FTVSFQEVKKDIANQMRITK 379
              +F ++K++I  +++ +K
Sbjct: 226 KKKTFDKMKEEITFEVKRSK 245


>gi|331270660|ref|YP_004397152.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum
           BKT015925]
 gi|329127210|gb|AEB77155.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum
           BKT015925]
          Length = 247

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 74/165 (44%), Gaps = 5/165 (3%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           +     V++   ++++++ E++  Y  NK+ +   E  + + ++  N++ A+E  + +K 
Sbjct: 79  ALTQMSVNKVLSEVQVTDKEVEDYYTANKKNFVVGETVSAKHILVDNEELANEVAEKIKN 138

Query: 293 GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           G  F + A+E     S     +LG F K  +      ++ F+L + G  +  +   FGY 
Sbjct: 139 GMSFDEAAKEYSTCPSKAQGGNLGKFGKGQMV-PEFEEAAFNL-EIGKLSEPVKTQFGYH 196

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +  V +   +   SF EVK  I   +   + + K     + L+  
Sbjct: 197 LIEVEDKNKATEKSFDEVKDMIKANLIQQRQTAKYTTFVEELKNK 241



 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 87/262 (33%), Gaps = 38/262 (14%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           EI+  +++   ++       P+ R      F  ++   +  + L   + F    +E    
Sbjct: 13  EITEKDIEVAIKRF------PQERQA---YFAGEQGKKQLLEQLIAFELFHAYGKENEFD 63

Query: 307 LSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                    ++E+I  + +   D++  ++     + V           V +   +   +F
Sbjct: 64  K--------TQEFIDGIEIMKKDALTQMSVNKVLSEVQVTDK-----EVEDYYTANKKNF 110

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
                 +   +         +E    + E +  G S DE ++         P     G  
Sbjct: 111 V-----VGETVSAKHILVDNEELANEVAEKIKNGMSFDEAAKEYS----TCPSKAQGGNL 161

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
            K  +   +P  E+  F +    +       V    G Y  +++++   A ++  +EV  
Sbjct: 162 GKFGKGQMVPEFEEAAFNL----EIGKLSEPVKTQFG-YHLIEVEDKNKATEKSFDEVKD 216

Query: 485 DVKKDWKTVKTAEEVSSKANQL 506
            +K +    +   + ++   +L
Sbjct: 217 MIKANLIQQRQTAKYTTFVEEL 238


>gi|212696251|ref|ZP_03304379.1| hypothetical protein ANHYDRO_00787 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676880|gb|EEB36487.1| hypothetical protein ANHYDRO_00787 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 248

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           +H   K I++S+DEL+  Y+ NKE    P+      ++  ++ EA++  + +K G +F +
Sbjct: 86  MHLLFKDIKVSDDELKEYYDNNKEVIKQPKTYKASHILVDSEDEANKILEEIKAGLEFEK 145

Query: 299 LAEEQGKS--LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            A++           LG F +  +      +++  L + G+ +  +   FGY I  + + 
Sbjct: 146 AADKYSTDKASKGGDLGEFPQGAMVK-EFEEALDKLDE-GEISNPVKSQFGYHIIKLDHT 203

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
             +    F E+K  I + + + K  EK  E   +++E +
Sbjct: 204 HNAHLPEFNEIKDRIHDTLLMIKRQEKYLEKTNKIKEKV 242


>gi|260682966|ref|YP_003214251.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196]
 gi|260686564|ref|YP_003217697.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291]
 gi|296451354|ref|ZP_06893092.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
 gi|296880296|ref|ZP_06904261.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
 gi|260209129|emb|CBA62320.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196]
 gi|260212580|emb|CBE03572.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291]
 gi|296259770|gb|EFH06627.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
 gi|296428739|gb|EFH14621.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
          Length = 261

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
           F +++    + ++ DE    +E NK  +  PE  T + ++  + ++A E    +K  +  
Sbjct: 93  FAINKVLSSVNVTEDEKVKFFEANKSSFSKPESATAKHILVDSDEKAKEILAQIKSEEIS 152

Query: 296 FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F   A +     S      LG+F +  +      +++FS+AK G+ +  +   FGY I  
Sbjct: 153 FEDAALKHSSCPSKDMGGDLGTFGRGQMV-PEFEEAVFSMAK-GEVSEPVKTQFGYHIIK 210

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
           + +++ S   +F EVK ++   +   K +E        L      
Sbjct: 211 LEDLQESTESTFDEVKAEVEKSLLYQKQNEVYGNKINALNAKYGN 255


>gi|218961252|ref|YP_001741027.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729909|emb|CAO80821.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
          Length = 565

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 83/619 (13%), Positives = 197/619 (31%), Gaps = 79/619 (12%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           I + +L + FL+        + + SS   SV   ++    F NS++    +   + G   
Sbjct: 8   IVITLLGLFFLV------SCATNSSSVAGSVNGTEISLEDFFNSYRGHYAIFGYQTGRTP 61

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE--------IARSPLFHG 127
             E      L  +   ++     L  + +   + A    V           I +SP F  
Sbjct: 62  TKEEKEK--LHNETWRDITKAIILQDYYKKYNISASVAEVLDTLSNSIPEHIIKSPRFQ- 118

Query: 128 KDNKFSHDVFVSRLAREGIN--EKEYID----HYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
            + KF   +++  L    +    +        +   ++    +  + +     S+ +  Q
Sbjct: 119 VNGKFDKKLYLQSL----MTDQPENLAALRKHYQENVIPILKLQKVLIEEEMLSSKIRKQ 174

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
            ++    N  ++  +     +      S+A ++ W++   + +R  ++ R+ Y    V  
Sbjct: 175 VEQIIASNADLELYIFAPSQLE--ISLSDAEISAWYQTNLEQFRLWQFYRLGYCSIPV-- 230

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
                E+S+        KN  ++   E+     +         +   +L+          
Sbjct: 231 IPDSTELSDA-------KNTAEFIRNELVRGIDI--------KDIIANLEN--------- 266

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
            +   +S I  G    E +P   + +++  L + G  +  +    G+++     I+ + T
Sbjct: 267 -KNSLVSFIDNGYQKTEELPW-EIQNALLGL-ENGLCSEPLPYEKGWIMYQ--KIQSTKT 321

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
           ++       I  Q     AS    E   +    LAL   + + +    I     P     
Sbjct: 322 LTLYN---TIFVQALPKTASLLAPETQAQQIMKLALNIGLQQAADEFGISYTLTPA---- 374

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
                   V A   K +L+  +   +     +   +    +++  ++ E        LEE
Sbjct: 375 -MSPDSLIVPANDIKGKLMKYLEIANSGDIIEPLYSAELSAWLIFEVVEKQSKEYLPLEE 433

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
           V   + +     +  ++      + ++  +                     Q+       
Sbjct: 434 VKPQIVQILSKERRKDQNKQIVERWLINQN----------IPANYQWEKLEQVTIDSLWQ 483

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMNK 600
                    Q     +E      I  G   +V KVT  +    +   ++  +  TQ + +
Sbjct: 484 GKPLTTIYYQAVKAYLEKANPPQITEGEVIIVPKVTAFRPQKTKISPERIKTIYTQNLPE 543

Query: 601 DLLDSVIAYLKSQYSVTVH 619
           D  +S +     +  V ++
Sbjct: 544 DWFNSWMEEQVKKAKVVIN 562


>gi|325479565|gb|EGC82661.1| putative peptidylprolyl isomerase PrsA2 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 354

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/396 (14%), Positives = 128/396 (32%), Gaps = 106/396 (26%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
              TV  V  +K+        +K EL   +  +        A    L   I+  +V    
Sbjct: 48  DDKTVAIVDGEKISKDD----YKSELSFYASML--------ASQQQLKNSIVTMMVQDKL 95

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           +   I+   ++ D   V   + +         +   + F   L    +   ++ +   K 
Sbjct: 96  IANDIKKNDIKVDDKEVEDALMQ--SVQNFGGQ---ENFDKTLDDYNMELDKFKETLKKD 150

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L                          Y ++R                  ++  + ++FE
Sbjct: 151 LM-------------------------YKKHRE---------WFDENNKVTDDEIKKYFE 176

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             KD +                                                  ++  
Sbjct: 177 DNKDEF-------------------------------------------AKVDASHILVE 193

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAK 334
           +++ A++    L  G+ F  LA+E  K      +  +LG+F+K  +      D+ FS+ K
Sbjct: 194 DEQTANDIKARLDNGEDFASLAKEYSKDTASAQNGGALGAFAKGQMVK-EFEDAAFSM-K 251

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +G+ +  +   FGY I  V++IK     SF++ K++I  +++  K ++ +K+ ++  E  
Sbjct: 252 EGEISAPVKSQFGYHIIKVNSIKD----SFEDSKEEITKKIKDQKYADYIKKLHE--ESN 305

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           +    + DE +  +   S      +    +   ++ 
Sbjct: 306 VVTDQTTDEATDEDNKESETEIKTEDNKAESNDQDA 341


>gi|153956391|ref|YP_001397156.1| foldase-related protein [Clostridium kluyveri DSM 555]
 gi|146349249|gb|EDK35785.1| Foldase-related protein [Clostridium kluyveri DSM 555]
          Length = 247

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 5/160 (3%)

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
            + +  + I++++ E++  Y  NK  Y  PE  T   ++  + ++A +    +KKG  F 
Sbjct: 84  TISKIMENIKVTDKEVEDYYTNNKSMYKKPENITARHILVDSFEKAAQISNEIKKGLSFE 143

Query: 298 QLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
             A++     S     +LG+F++  +       + F L + G  +  +   FGY +  V 
Sbjct: 144 DAAKKYSSCPSKAQGGNLGNFTRGQMV-PEFETAAFQL-EIGILSKPVKTQFGYHLIKVE 201

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
             +      F +VK  I N +   K + +  +    L++ 
Sbjct: 202 KKEKDSIKGFDKVKNAIKNGLLQEKRTLEYSKCINNLKDK 241


>gi|187933209|ref|YP_001887564.1| foldase protein PrsA [Clostridium botulinum B str. Eklund 17B]
 gi|187721362|gb|ACD22583.1| foldase protein PrsA [Clostridium botulinum B str. Eklund 17B]
          Length = 247

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 71/165 (43%), Gaps = 5/165 (3%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           +     +++    + +++++++  Y+ N   + +P   + + ++   ++EA    + +  
Sbjct: 79  ALTQLAINKVLADVTVTDEDVKKYYDDNSSMFINPPTVSAKHILVKTEEEATSIKEEIAN 138

Query: 293 GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           G  F + A++     S     SLG+F K  +         F  ++ G  +  +   FGY 
Sbjct: 139 GLAFEEAAKKYSTCPSKEQGGSLGNFGKGSMV-PEFEKVAFE-SEVGKVSEPVKTQFGYH 196

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +  V +   S TV F +VK  +  Q+   +   K  E  K+L + 
Sbjct: 197 LILVEDKTESTTVPFDQVKDAVLKQLINERQQNKYLEMIKQLSDK 241



 Score = 38.0 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 9/124 (7%)

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
           K +E+   ++E +A G + +E +++        P  +  G      + + +P  E++ F 
Sbjct: 124 KTEEEATSIKEEIANGLAFEEAAKKYS----TCPSKEQGGSLGNFGKGSMVPEFEKVAF- 178

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
              + +       V    G Y  + +++   +     ++V   V K     +   +    
Sbjct: 179 ---ESEVGKVSEPVKTQFG-YHLILVEDKTESTTVPFDQVKDAVLKQLINERQQNKYLEM 234

Query: 503 ANQL 506
             QL
Sbjct: 235 IKQL 238


>gi|158319280|ref|YP_001511787.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           oremlandii OhILAs]
 gi|158139479|gb|ABW17791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           oremlandii OhILAs]
          Length = 249

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 65/157 (41%), Gaps = 5/157 (3%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           +H   K   +S +++   Y ++ + +  PE      ++  ++++A+E  + + +G  F +
Sbjct: 86  MHNVLKNATVSEEDMLNYYNEHTDSFKEPESMQASHILVESEEKANEVLKEINEGLSFEE 145

Query: 299 LAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
            A++     S      LG F++  +      ++ F + + G  +  +   FGY I    N
Sbjct: 146 AAKKHSTCPSNAQGGDLGHFTRGRMV-PEFENAAFDM-EVGAVSAPVKTQFGYHIIKAVN 203

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                   F EVK  +  Q+ + K  E        L+
Sbjct: 204 KVEESVKPFAEVKMQLNQQLSMMKQQELYLNKVDELK 240



 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
           E   KAN+ VL+   EG +F +  K            +           +  +  F   V
Sbjct: 125 ESEEKANE-VLKEINEGLSFEEAAKKHSTCPSNAQGGDLGHFTRGRMVPEFENAAFDMEV 183

Query: 558 EMVKCFPIENGLSY----VVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
             V   P++    Y     V KV  S     + K +    L+ M  ++L  + +  LK +
Sbjct: 184 GAV-SAPVKTQFGYHIIKAVNKVEESVKPFAEVKMQLNQQLSMMKQQELYLNKVDELKKE 242

Query: 614 YSVTVHD 620
           Y V +++
Sbjct: 243 YEVQINE 249



 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           +  +  + +VG +++    F       LG ++ +     NSE  +     K+++  LV+ 
Sbjct: 1   MDNNKVLATVGGREITQQDFDL----LLGSLNPQQAMQFNSEAGK-----KQLVQELVNQ 51

Query: 97  ATLDQFIEDIGLEADHGRVWGE 118
                     GL+ D   +   
Sbjct: 52  ELFLLEALKNGLDKDEVFIQEA 73


>gi|92113046|ref|YP_572974.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
           salexigens DSM 3043]
 gi|122070642|sp|Q1QZ33|SURA_CHRSD RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|91796136|gb|ABE58275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
           salexigens DSM 3043]
          Length = 435

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/415 (12%), Positives = 128/415 (30%), Gaps = 63/415 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V +  +  S   +   Q    ++ +     N        L +++LD ++     
Sbjct: 30  DRIVAVVNKDAIMQSRLEDRVTQVRRQMASR-----NVPAPNEADLRRQVLDRMILEQIQ 84

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E   L  D  ++   +        +DN  S D F   L  +G++     +   + +
Sbjct: 85  LQMAERANLSIDDTQLNATVRGI----AEDNGMSMDEFADALEEDGMSLASMREQVRREM 140

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDY------IVLNNRHVPAIADPSNAV 212
               V        +  ++  +++      E     Y      + +     P   + + A 
Sbjct: 141 LLRQVQQSQVASRVNVTDREVERYLDQQGETADTAYHLAHILVSVPESPTPEQVEQAQAK 200

Query: 213 LTQWFEK--YKDNYRAPEYKR-------------------ISYILFDVHEKEKKIEISND 251
           +   + +     N+                          +  +  DV       E+S  
Sbjct: 201 VRDLYRQLQNGANFAQLATAESDGQQALSGGDLGWRRGDQLPSLFADVVPTLSNGEVSEP 260

Query: 252 ----------ELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKK 292
                     +L     +  E+        V  ++            +  A +  Q +  
Sbjct: 261 IRSPSGFHLVKLIDTRGQQGEQKRVVTENRVRHILIGTNPNRNDQQAEALARDIRQRIAN 320

Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G+ F  LA+E     G +L    LG      +   +  D++ +L   G+ +  +   FGY
Sbjct: 321 GESFAALAQEYSDDDGSALDGGELGWTRPGQMV-PAFEDAVKAL-DVGELSQPVRSRFGY 378

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
            +  + + +    V+    ++ I   +   K S++++   + +     +   +++
Sbjct: 379 HVIELEDRR-RQDVTRDAQREQIRQTLFQRKVSDEMEAWTQEIRSGAYIDNRLED 432


>gi|224369907|ref|YP_002604071.1| PpiD2 [Desulfobacterium autotrophicum HRM2]
 gi|223692624|gb|ACN15907.1| PpiD2 [Desulfobacterium autotrophicum HRM2]
          Length = 314

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/383 (13%), Positives = 116/383 (30%), Gaps = 83/383 (21%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           KI   +    F ++ L   +++      V  V    +  +    + +  +  I    G+ 
Sbjct: 5   KINFGLAIGVFTLFTLCGNVYAEIVDRIVAIVNEDIITLTELNTALRPYIDKI-DSAGYT 63

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
            + +      L   +L  +V     DQ ++   +      +   I R           + 
Sbjct: 64  GDKKEKILFKLRTDMLSRMVDRKLTDQEVKKFNITVTDKEIDAAIERLKQAQL----MTQ 119

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           +   + L ++G+   +Y +     + R  ++                             
Sbjct: 120 EDLETALEKDGMTFADYREKMRLEIMRPKLIN---------------------------- 151

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
                  V +    ++  +  ++ +++  Y      R+                      
Sbjct: 152 -----YSVKSKVIVTDKDIAAYYAEHQAEYAGVRKFRL---------------------- 184

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DIS 311
                               ++  ++  A+  +  L+ G+ F  LA E  K+ +     +
Sbjct: 185 ------------------SNILVSDESTAETVWNRLETGEDFKALAGELSKAPNAAEGGA 226

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           LGSF+ + + D           + G +T VI    G+ I  +  I  S   +  EVK +I
Sbjct: 227 LGSFALDTLSDQL--KVAIGKLEPGQYTNVIPTDQGFQIFFLDEIVESKGNALDEVKDEI 284

Query: 372 ANQMRITKASEKVKEDYKRLEEF 394
             ++  +   +K     + L E 
Sbjct: 285 QKKLYDSIVEKKFNSWLESLREK 307


>gi|312876097|ref|ZP_07736085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797083|gb|EFR13424.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 335

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/385 (15%), Positives = 125/385 (32%), Gaps = 86/385 (22%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM--IS 68
           +  A + L++L          + +  V  +  V  V  +K+    F  ++K ++    + 
Sbjct: 11  SIAAVVLLIILIAV-----TPEIVRYVDENRAVAIVNGEKITKKEFAINYKSQINYYGLD 65

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
           +        ++     + + +LD L+      Q      +            +      K
Sbjct: 66  KAFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQARKRNITLSSAEKKAIDQQIE--QYK 123

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
            +  S   F   L   G  E EY D       ++ +V                       
Sbjct: 124 SDSQSGTEFKQYLQTIGATENEYKDQV----IKSQIVSKLY------------------- 160

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
                        V      S+A +  ++  +K ++      + S+ILF V++       
Sbjct: 161 -----------DEVTKNQKASDAEIESYYNSHKSDFVE---VKASHILFKVND------- 199

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-- 306
                                    +     +K+A+E  Q +K G+ F +LA++  +   
Sbjct: 200 ------------------------SKEEAAKKKKAEEILQMIKDGQNFEKLAQKYSEDET 235

Query: 307 --LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F K  +      D+ FSL   G+ + ++  S+G+ I  V++ K    +  
Sbjct: 236 TKQKGGDLGYFRKGQMVK-EFEDAAFSL-NIGEISSIVKTSYGFHIIKVTDRK---QLLL 290

Query: 365 QEVKKDIANQMRITKASEKVKEDYK 389
            +VK +I + +   K  E  +   +
Sbjct: 291 SDVKDEIKSTIESQKKDEYYQSLLE 315


>gi|312623037|ref|YP_004024650.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203504|gb|ADQ46831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 335

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/385 (15%), Positives = 127/385 (32%), Gaps = 86/385 (22%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM--IS 68
           +  A + L++L          + +  V  +  V  V  +K+    F  +++ ++    + 
Sbjct: 11  SIAAVVLLIILIAV-----TPEIVKYVDENRAVAIVNGEKITKKEFAINYRSQINYYGLD 65

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
           +        ++     + + +LD L+      Q  +   +            +      K
Sbjct: 66  KTFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQAKRKNIALTSAEKKAIDQQIE--QYK 123

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
            +  S   F   L   G  E EY D       ++ +V                       
Sbjct: 124 SDSQSGAEFKQYLQTIGATENEYKDQV----IKSQIVSKLY------------------- 160

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
                        +      ++A +  ++  +K ++      + S+ILF V++       
Sbjct: 161 -----------DEITKNQKATDAEIENYYSSHKSDFVE---VKASHILFKVND------- 199

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-- 306
                                    +     +K+A+E  Q +K G+ F +LA++  +   
Sbjct: 200 ------------------------SKEEATKKKKAEEVLQMIKDGQNFEKLAQKYSEDET 235

Query: 307 --LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F K  +      D+ FSL   G+ + ++  S+GY I  V++ K    +S 
Sbjct: 236 TKQKGGDLGYFRKGQMVK-EFEDAAFSL-NIGEISNIVKTSYGYHIIKVTDKK---QLSL 290

Query: 365 QEVKKDIANQMRITKASEKVKEDYK 389
            EVK +I + +   K  E  +   +
Sbjct: 291 NEVKDEIKSTIESQKKDEYYQSLLE 315


>gi|149924976|ref|ZP_01913302.1| peptidylprolyl cis-trans isomerase [Plesiocystis pacifica SIR-1]
 gi|149814159|gb|EDM73776.1| peptidylprolyl cis-trans isomerase [Plesiocystis pacifica SIR-1]
          Length = 630

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 152/441 (34%), Gaps = 65/441 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           M    R      V  + L VL + F + +GL     SV  S     V  Q V    F  +
Sbjct: 1   MFGSERGKGGDIVVWLILGVLALAFGLTFGLPSDQLSVGESGY-ARVFGQNVTKEDF--A 57

Query: 60  WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           ++Q      + +G V      E+ R+ G+ +++L+ +V    L    E++GL     R  
Sbjct: 58  YQQ------RALGTVFPLPEGEQGRTFGVREEVLEAIVERLVLASTGEELGL-MTETRDA 110

Query: 117 GEIARSPLFHGKD----------NKFSHDVFVS-RLAREGI---NEKEYIDHYTKMLSRT 162
            E+ R   +   D           KF ++ F +  L   G    +E  Y++   + L   
Sbjct: 111 EEMTRDGFYIILDLDRGFPWAGEAKFDYEWFKNDFLR--GYLVVSEPRYLEIQRQELLAR 168

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
               +    +      +           S+ Y+         + DP+ A +  W  ++ D
Sbjct: 169 QTRDLIAASVVVPEAEVWAEFEKRNNQLSLRYVRFPPNDYAELVDPTAAEVDGWMMEHPD 228

Query: 223 NYRAP-EYKRISYILFDVHEKEKKIEISN---------DELQAEYEKNKEKYFSPEIRTV 272
                 E +   ++        + IE++          +E+QA +E N     +      
Sbjct: 229 ELTEMYEREAARFLKLPAEVDLRIIEVAKPMQPPADAGEEVQAMWEANVAAAKAKAELAR 288

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS-------FSKEYIPDVSL 325
            ++V                G++F  +A E  +++    +G               D ++
Sbjct: 289 TRIV--------------DNGERFSTVARELSEAIDTARIGGRYGWTQVTDTGSGLDRAV 334

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKV 384
             +  +L + G  + VI G     +  V+  +        + K+++A   +R  +  E  
Sbjct: 335 DKAAQAL-EDGQVSEVIEGESALFVVMVAGHREGDVPE-DQAKRELAEDAVRSARGRELA 392

Query: 385 KEDYKR-LEEFLALGTSMDEI 404
           K+     L      G  +D++
Sbjct: 393 KQAADEALLALREGGKDLDDL 413



 Score = 37.7 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/127 (9%), Positives = 38/127 (29%), Gaps = 6/127 (4%)

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           +  G     ++R          +    G        + +        +     +      
Sbjct: 292 VDNGERFSTVARELSEAIDTARIGGRYGWTQVTDTGSGLDRAVDKAAQAL---EDGQVSE 348

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD-WKTVKTAEEVSSKANQLVLEYSKE 513
            +   + +   V +       D   ++   ++ +D  ++ +  E     A++ +L   + 
Sbjct: 349 VIE-GESALFVVMVAGHR-EGDVPEDQAKRELAEDAVRSARGRELAKQAADEALLALREG 406

Query: 514 GKNFRDI 520
           GK+  D+
Sbjct: 407 GKDLDDL 413


>gi|126698956|ref|YP_001087853.1| putative peptidyl-prolyl isomerase [Clostridium difficile 630]
 gi|254974902|ref|ZP_05271374.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-66c26]
 gi|255092291|ref|ZP_05321769.1| putative peptidyl-prolyl isomerase [Clostridium difficile CIP
           107932]
 gi|255100375|ref|ZP_05329352.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-63q42]
 gi|255306317|ref|ZP_05350488.1| putative peptidyl-prolyl isomerase [Clostridium difficile ATCC
           43255]
 gi|255314029|ref|ZP_05355612.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-76w55]
 gi|255516709|ref|ZP_05384385.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-97b34]
 gi|255649808|ref|ZP_05396710.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-37x79]
 gi|255655366|ref|ZP_05400775.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-23m63]
 gi|306519909|ref|ZP_07406256.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-32g58]
 gi|115250393|emb|CAJ68215.1| putative peptidyl-prolyl isomerase [Clostridium difficile]
          Length = 251

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
           F +++    + ++ DE    +E NK  +  PE  T + ++  + ++A E    +K  +  
Sbjct: 83  FAINKVLSSVNVTEDEKVKFFEANKSSFSKPESATAKHILVDSDEKAKEILAQIKSEEIS 142

Query: 296 FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F   A +     S      LG+F +  +      +++FS+AK G+ +  +   FGY I  
Sbjct: 143 FEDAALKHSSCPSKDMGGDLGTFGRGQMV-PEFEEAVFSMAK-GEVSEPVKTQFGYHIIK 200

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
           + +++ S   +F EVK ++   +   K +E        L      
Sbjct: 201 LEDLQESTESTFDEVKAEVEKSLLYQKQNEVYGNKINALNAKYGN 245


>gi|312134560|ref|YP_004001898.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           owensensis OL]
 gi|311774611|gb|ADQ04098.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           owensensis OL]
          Length = 335

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 83/378 (21%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM--ISQKIGFVV 75
           +V+L +   +    + +  +  +  V  V  +K+    F  ++K ++    + +      
Sbjct: 15  IVLLIIVIAVT--PEIVKYMDENRAVAIVNGEKITKKEFAINYKSQINYYGLDKAFLSQK 72

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
             ++     + + ILD+L+      Q      +            +      K +  S  
Sbjct: 73  VGDKTYEQQIKEDILDSLILRQIELQQARKRNITLTSAEKKAIDQQIE--QYKSDSQSGA 130

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
            F   L   G  E ++ D       ++ ++                              
Sbjct: 131 EFKQYLQTIGATENDFKDQV----IKSQIISKLY-------------------------- 160

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
                 V      S+A +  ++  +K ++      + S+ILF V++              
Sbjct: 161 ----DEVTKSQKASDAEIESYYNSHKSDFVE---VKASHILFKVND-------------- 199

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDIS 311
                             +     +K+A+E  Q +K G+ F +LA++  +          
Sbjct: 200 -----------------SKEETAKKKKAEEVLQMIKSGQSFEKLAQKYSEDETTKQKGGD 242

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           LG F K  +      D+ FSL   G+ + V+  S+G+ I  V++ K    +S  +VK +I
Sbjct: 243 LGYFRKGQMVK-EFEDAAFSL-NIGEVSNVVKTSYGFHIIKVADKK---QLSLNDVKDEI 297

Query: 372 ANQMRITKASEKVKEDYK 389
            + +   K  E  K   +
Sbjct: 298 KSTVESQKKDEYYKSLIE 315


>gi|39997172|ref|NP_953123.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39984062|gb|AAR35450.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
 gi|298506185|gb|ADI84908.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           sulfurreducens KN400]
          Length = 321

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 97/287 (33%), Gaps = 33/287 (11%)

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
           +F  + + F        L+R     ++  D   K + R ++  +    +           
Sbjct: 44  IFRDELDHFV----EFALSRRRGAGRKVTDEQKKRVERQELDKLIAMELLAQAGEKLNPA 99

Query: 184 RFYFENRSVDYIV-LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
               + ++    +  +     ++  PS   L                + +    +     
Sbjct: 100 DLSKKIQARREAIGSSVSRGGSVVAPSEDRLND-----------TARRDVLVDAYLASRG 148

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSL 290
              I++   +L+A YEKNK  +  PE   V  ++   +KEA            +     +
Sbjct: 149 IDAIKVPETDLRAYYEKNKSGFKKPETIAVRHILVKVEKEASPETQAEARKKIEGIRDRI 208

Query: 291 KKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             G  F  LA E      +     LG   + ++P        FSL K G+ + ++    G
Sbjct: 209 GAGADFAVLASESSDCASAAKGGDLGEIQRGFMP-REFDQVAFSL-KPGETSGIVKTHHG 266

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           + I  V    P    +F+E++  I   +      +KV+E  + L+  
Sbjct: 267 FHIIRVMERHPETVRTFEEMRDFIEQYLAKDYQRKKVEEIVEELKRA 313


>gi|313206481|ref|YP_004045658.1| ppic-type peptidyl-prolyl cis-trans isomerase [Riemerella
           anatipestifer DSM 15868]
 gi|312445797|gb|ADQ82152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Riemerella
           anatipestifer DSM 15868]
 gi|315023578|gb|EFT36582.1| Peptidyl-prolyl cis-trans isomerase [Riemerella anatipestifer
           RA-YM]
 gi|325336073|gb|ADZ12347.1| Peptidyl-prolyl cis-trans isomerase, PpiC-type [Riemerella
           anatipestifer RA-GD]
          Length = 708

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 104/719 (14%), Positives = 205/719 (28%), Gaps = 130/719 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L  IRK  R W+   F+ +  + FL+   S         + +  V  +++    +     
Sbjct: 4   LGEIRK--RPWILIGFIAIALLAFLVNPDSLDKVFGKDPNILGKVNGEEITRDEYNEQLM 61

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                   + G  +       VGL+++    LV    + Q  E +GLE      W ++  
Sbjct: 62  LMRNQAESQ-GQPL-------VGLEEQAWQTLVQSKLIKQQFEKMGLELTEDFFWNQLQY 113

Query: 122 SPLFHGKDNKFSHD-VFV--------SRLAREGINEKEY------IDHYTKMLSRTDVVG 166
            P+F      F     F           L   G   +EY             +    +  
Sbjct: 114 DPMFSQNPQNFDAKGNFKLTEIKKEIEGLRESG-RVQEYNQWLNIRKTIEYRMMARQLFA 172

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIV------------------------------ 196
               G+       +   +   +   +D++                               
Sbjct: 173 NVTNGITVGKKEAELIMKNRDQVADIDFVKIDYNTFAQKNPVKVTSEDLANFIKKHPVAF 232

Query: 197 ------------LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
                          +        +   L + +    +N+       + ++  +     K
Sbjct: 233 KAEASRNLGVVLFPAKPSAIDDSLTLKELRKLYNGEGENFLNSPSDSM-FVEINSEAPVK 291

Query: 245 KIEISNDELQAE----------------YEKNKEKYFSP-----EIRTVEQLVFP----- 278
              +S  E+  E                Y+   + Y +      E    + ++       
Sbjct: 292 YGFVSEQEVPQEAQAFVKTATVGQVYGPYKSGGKYYVTKLAGKSEATLPKHILIAFAGTD 351

Query: 279 ----------NQKEADEAFQSLK--------KGKKFIQLAEEQGKSLSDISLGSF-SKEY 319
                      ++EA +   S+         K  +F+  + ++G +     L      + 
Sbjct: 352 VAKQDPSIKRTKEEAKKLADSIATQVKADPAKFTQFVSFSADKGSAQQGGMLQWVLPGKS 411

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
                 AD + S   KG    V+   FGY +    N  P        + KDI       +
Sbjct: 412 GFVKPFADWVES-NPKGAV-GVVETQFGYHVMVNENKMP--VYKIANLAKDIRA---SKE 464

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
              KV        + +  G S +E +   K  +         G+     +       E++
Sbjct: 465 TQNKVYAQANTFIQQI-QGKSFNEFANLAKKSNYQFANPKMVGRFQGQIQGLGTDKDEEI 523

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           L   F KD      +     +G Y+   +     A     E V   ++   K    A+++
Sbjct: 524 LAWAFNKDTDKGDTNIFTTSNGDYVVAYLNGKQEAGLADPESVREQIEPIVKNQLLAKKI 583

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS-QVFSGPVE 558
             K N      + +  +  +I K  GA +  + QIN +           ++   F     
Sbjct: 584 IEKLN------ASKSLSLDEIAKQFGA-VKESGQINMLTPSLGMAMEPKVAGAAFGVAPN 636

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            V      N   YVV K   S+     +  +F+  L Q   +    S++  L+    + 
Sbjct: 637 KVSKPIEGNTGVYVVVKKKVSENKQPGDAKQFVQMLEQQNAQMFTQSLLKSLQDNADIK 695


>gi|262199092|ref|YP_003270301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
           DSM 14365]
 gi|262082439|gb|ACY18408.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
           DSM 14365]
          Length = 650

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 61/404 (15%), Positives = 131/404 (32%), Gaps = 48/404 (11%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALF---SVSGSSTVVSVGRQKVPFSSF 56
           MLE +R+ SR+++  I   ++   F+  +G    +    +   +   ++V  ++V   + 
Sbjct: 1   MLEQLRQNSRSFLIWILFGIIIAAFVFTFGTQSDVSFSCTGPSADYAMTVDDEEVGIPAL 60

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                         IG    S+  R+    +  LD L+    L Q   + G    +    
Sbjct: 61  RYGLNT--------IGRSGQSKAQRA----QFALDGLLKREILAQASAEAGFHVSNEMAQ 108

Query: 117 GEIAR-------SP----LFHGKDNKFSHDVFVSRLAREGINE-KEYIDHYTKMLSRTDV 164
             I          P      +     F  +   + +   G++   ++I+   + L   ++
Sbjct: 109 IAIREGDIYVLTMPVDGKSLYFDSGYFDDERLKAWVNGMGLSSLGQFIEEQQRELEAQNM 168

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
           + +       +         +     ++  +             + A   ++ +  +   
Sbjct: 169 LELIRSAAVSTPEEARARFIYENTKATLAVVQFRPGDYIRKIVLTPADTQKYLDDNRAE- 227

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--- 281
                      L+    KE +I       Q  + + K     P     E      +    
Sbjct: 228 -VQAKYDADAALYKGRGKEVQIR------QIFFARQKPAVLRPGQEASEPAAGEEEDPAL 280

Query: 282 -EADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKE--YIPDVSLADSIFSLAK 334
             A +A   +  G  F  +A E  +          LG  S+E   +    LAD I  L  
Sbjct: 281 VAARQARVRIVGGADFAAVASELSEDERTKAKGGYLGWRSQENPGLGARELADGIKELG- 339

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
            G+ + VI    G+ +  +  ++    +SF +V  ++A QM + 
Sbjct: 340 AGEVSEVISVPRGFYVFKIEGVREG-DLSFDQVALELAEQMAVE 382


>gi|149181601|ref|ZP_01860095.1| post-translocation molecular chaperone [Bacillus sp. SG-1]
 gi|148850715|gb|EDL64871.1| post-translocation molecular chaperone [Bacillus sp. SG-1]
          Length = 313

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 23/227 (10%)

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE--------- 228
           L+DQ      +    D I +           ++  + +   K  ++Y   E         
Sbjct: 73  LVDQYGEAALDTLIADKI-VELESDEQKIKVTDGEIEEELHKLHESYGDEEAFNQALTSS 131

Query: 229 -------YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
                     I   L      + ++ I++D++Q  +E NK+ +   E      ++  N++
Sbjct: 132 GTSLQSVKDNIHSYLLTKKLLQDRVSITDDQVQEYFETNKDSFAQQEQVEASHILVENEE 191

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
            A E  + L  G+ F QLAEE         S   LG F+K  +      +  FS+ +  +
Sbjct: 192 TAKEVKEMLDNGEDFAQLAEEYSVDTSNAGSGGELGYFAKGEMV-AEFEEKAFSM-EIEE 249

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
            +  I   FG+ I  V++ K +     ++ K++I   +       + 
Sbjct: 250 ISNPIETEFGFHIIKVTDKKEAEEAVLEDHKEEIQEILYEQALQTEY 296


>gi|253681183|ref|ZP_04861984.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum D str.
           1873]
 gi|253562619|gb|EES92067.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum D str.
           1873]
          Length = 246

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 74/165 (44%), Gaps = 5/165 (3%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           +     V++   ++++++ E++  Y  NK+ +   E  + + ++  N++ A++  + +K 
Sbjct: 79  ALTQMSVNKVLSEVKVTDKEVEDYYTANKKNFVVGETVSAKHILVDNEELANKIAEKIKD 138

Query: 293 GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           G  F + A+E     S     +LG F +  +      ++ F+L + G  +  +   FGY 
Sbjct: 139 GMSFDEAAKEYSTCPSKAQGGNLGRFGRGQMV-PEFEEAAFNL-EIGKLSEPVKTQFGYH 196

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +  V +   +   SF EVK  I   +   + + K     + L+  
Sbjct: 197 LIEVEDKNEATEKSFNEVKDMIKANLIQQRQTAKYTTFVEELKNK 241



 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 85/260 (32%), Gaps = 34/260 (13%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           EI+  +++   ++       P+ R      F  ++   +    L   + F    +E    
Sbjct: 13  EITERDIEVAIKRF------PQERQA---YFAGEQGRKQLLDQLVAFELFYAYGKENELD 63

Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
            +   +         ++   D++  ++     + V           V +   +   +F  
Sbjct: 64  KTQEFIDGI------EIMKKDALTQMSVNKVLSEVKVTDK-----EVEDYYTANKKNFV- 111

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
               +   +         +E   ++ E +  G S DE ++            +  G+  +
Sbjct: 112 ----VGETVSAKHILVDNEELANKIAEKIKDGMSFDEAAKEYSTCPSKAQGGNL-GRFGR 166

Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
           G+ V   P  E+  F +    +       V    G Y  +++++   A ++   EV   +
Sbjct: 167 GQMV---PEFEEAAFNL----EIGKLSEPVKTQFG-YHLIEVEDKNEATEKSFNEVKDMI 218

Query: 487 KKDWKTVKTAEEVSSKANQL 506
           K +    +   + ++   +L
Sbjct: 219 KANLIQQRQTAKYTTFVEEL 238


>gi|313672612|ref|YP_004050723.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939368|gb|ADR18560.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 313

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 14/163 (8%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEA----DEAFQSL 290
           +   K I+I+  E +  YEKNK+ +  PE+     ++       N K+A    D  ++ L
Sbjct: 140 NSIAKDIKITEQEKKDFYEKNKDIFKDPEMVKASHILIKVDDKQNDKDAKSKIDSIYKEL 199

Query: 291 KKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           K GK F +LA++    G + +   LG F +  +      +  FS    G F+      +G
Sbjct: 200 KSGKSFEELAKKYSQDGSAANGGDLGFFPRGAMVK-EFENVAFS-TPAGKFSEPFKTQYG 257

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           Y I  V+  +P+ T +++EV   I  ++R+ K    + +  + 
Sbjct: 258 YHIVKVTEKRPAKTYTYEEVSNHIEGKLRMDKLKGILDKKVEE 300



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 49/160 (30%), Gaps = 5/160 (3%)

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           IA    I       F E  KDI     + KAS  + +   +  +  A    +D I +  K
Sbjct: 142 IAKDIKITEQEKKDFYEKNKDIFKDPEMVKASHILIKVDDKQNDKDAKSK-IDSIYKELK 200

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL----FRVFGKDDPLSKDHTVALPDGSYMW 465
                  L     +D        + +  +      F       P  K          Y  
Sbjct: 201 SGKSFEELAKKYSQDGSAANGGDLGFFPRGAMVKEFENVAFSTPAGKFSEPFKTQYGYHI 260

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
           V++ E  PA+    EEV   ++   +  K    +  K  +
Sbjct: 261 VKVTEKRPAKTYTYEEVSNHIEGKLRMDKLKGILDKKVEE 300


>gi|78224732|ref|YP_386479.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
 gi|78195987|gb|ABB33754.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
          Length = 333

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 109/363 (30%), Gaps = 78/363 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +  +  V  + +   +        L    ++              LD+  L+ L+    +
Sbjct: 26  NRILAVVNDEIITSYAVEKEKATILKEAERQQPPPPPESLV---HLDETALNRLIDKKLV 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +Q + ++ ++     V   I        + NK S +  VS LA +G++  +Y     + L
Sbjct: 83  EQKVRELDIKVSEEEVRQAIEDV----KRQNKLSQESLVSALANQGLSFDQYKVQIREQL 138

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  +V                                    V +        + +++E 
Sbjct: 139 ERLRLVSQ---------------------------------EVRSKIQVGEREMREYYEA 165

Query: 220 YKDNYRAPEYKRIS--YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
               +   E  R    Y   D      +++                              
Sbjct: 166 NPGRFGGEENFRARNIYFKLDEKMPADQVK------------------------------ 195

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLA 333
                A       + GK F +LA +     +       LG+F K  I      +S+  + 
Sbjct: 196 KIMTTALTVLHEARDGKDFAELARQHSDDPAAKNTGGDLGTFRKGDIL-PEFEESLIKM- 253

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           K G+ + +I+ S G  I  +          F++VK ++ + +   K+ E+  +    L +
Sbjct: 254 KPGEVSDLIYVSGGLHIVKLEARFAGTPKPFEQVKAEVEDILYRKKSEERFNQWVADLRK 313

Query: 394 FLA 396
             A
Sbjct: 314 GAA 316


>gi|284040856|ref|YP_003390786.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
 gi|283820149|gb|ADB41987.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
          Length = 706

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 77/718 (10%), Positives = 185/718 (25%), Gaps = 124/718 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV------SGSSTVVSVGRQKVPFSS 55
           +  IR+ S      + + ++ V  +++ +   L              V  +  Q + +  
Sbjct: 4   INKIRERSG-----LAVGIIAVSLILFIVGGDLLGGRSLLFGGNQQEVGEIAGQSIDYQE 58

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
           F     +      Q+ G     +      + ++  + L+      +  + +GL+     +
Sbjct: 59  FNAKVDELRAQFEQQSGRAPVDQDLVQ--IREQAWNQLLFEIAYQKEFDKLGLQVTSEEL 116

Query: 116 WGEIARS-------PLFHGK-DNKFSHDVFVSRL-------AREGINEKEYIDHYTKMLS 160
              +  +         F       F     +S L       A++      +  +      
Sbjct: 117 VDMVQGNNISPAVRQAFTNPQTGVFDKSSIISYLKGLKNLPAQQQAAWAGFEKNLASDRL 176

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN---------------------- 198
           R    G+    +  +     +  +      +V ++ +                       
Sbjct: 177 REKYEGLMRLSVFATTAEAQKEYQAQNSKANVKFLFVPYYTINDTTVKVTDSQLEDYLSK 236

Query: 199 ------------NRHVPAIADPSNAVLTQWFEK------------YKDNY---------- 224
                        ++V     PS    +  + +                +          
Sbjct: 237 HKDEYPGSDSRSIQYVTFSVAPSKEDSSALYTQIKSLARGLGAATNDSTFAQQNSDVRVP 296

Query: 225 ------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                   PE  R +   F                   Y+    K  +        ++  
Sbjct: 297 LYLTAGEMPEQLRAAIPTFAPGGIYGPFR--EGNTYFIYKYGGTKRDTNFTARASHILIQ 354

Query: 279 NQKEADEA-----------FQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
            +  AD A            + ++ G  F  LA+      S      LG F         
Sbjct: 355 TKGLADSAKADARRRAEGILKQIQGGASFEALAQTNSDDGSRSVGGDLGYFKNNGQMVKP 414

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEK 383
              ++F     G    ++   FGY I +V+  K +       + K I  +Q    +A  K
Sbjct: 415 FETAVFGATSAGLIPRLVETEFGYHIINVTQPKTNVLYRIAAIGKAITPSQTTRDEALRK 474

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
             +    +         + E        +  +P        + G EV       Q++   
Sbjct: 475 ADQFASDVHTKEEFDAKVKEDKSLVVATADRIPEGANQINALTGSEV------RQIVRWA 528

Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
           F     ++           Y+   +          + +   ++    +          K 
Sbjct: 529 FNDKTDINTVSEPFEVGDQYVIAVLTNKTSKDKVSINDFRNELTAKVRNEL-------KG 581

Query: 504 NQLVLEYSKEGKNFRDIGKNLGAS--LLTTNQINRMDNENKFFGYDGIS--QVFSGPVEM 559
            Q++ +          I +  GA   + T   +N      +  G D ++  + F      
Sbjct: 582 EQIISKLGNASGTLESISQKYGAGALVETVEDVNLATGFLRSAGVDPVALGKAFGLKPGK 641

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                   G   ++  V+ +    + +   + + + Q   + +   +   +K    V 
Sbjct: 642 RTKPFAGEGGVLIMEAVSLTPAPAIADYALYKTQIQQNNTQRVGFYINEAIKDAAKVE 699


>gi|258543673|ref|YP_003189106.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634751|dbj|BAI00727.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256637807|dbj|BAI03776.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256640861|dbj|BAI06823.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643916|dbj|BAI09871.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646971|dbj|BAI12919.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650024|dbj|BAI15965.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653014|dbj|BAI18948.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656068|dbj|BAI21995.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 352

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 65/157 (41%), Gaps = 6/157 (3%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQG 304
           ++D ++  Y++N     + +      ++   + EA++  + LK G  F +LA     ++G
Sbjct: 181 TDDAIKQYYDQNYAGKPAEKEVHARHILVKTEAEANDVIKKLKAGADFGKLAAHVSTDKG 240

Query: 305 KSL-SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            +  +   LG F K  +   + +D+ F++ K    +  +   +GY +  V + +     +
Sbjct: 241 SAQQNGGDLGWFKKTDMI-PAFSDAAFAMKKGEISSTPVKSQYGYHVIQVLDTRTDPVPT 299

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
              V+  I   +      E V +   +++       +
Sbjct: 300 LDAVRDKIRQALIQKYVREAVDKATNQVKIVRFDPNT 336


>gi|92116105|ref|YP_575834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           hamburgensis X14]
 gi|91798999|gb|ABE61374.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           hamburgensis X14]
          Length = 308

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 71/176 (40%), Gaps = 10/176 (5%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  I+++ ++  Y    ++  S E      ++ P ++EA +    LKKG  F +LA+++ 
Sbjct: 127 KAAITDEAMKTVYADASKQITSEEEVHARHILVPTEEEAKKVEDELKKGADFAELAKKES 186

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           K         LG F+KE +     +   F+L + G  +  +   FG+ I  V   +    
Sbjct: 187 KDPGASDGGDLGFFTKEQMV-PEFSKVAFAL-EPGKISDPVKTQFGWHIIKVEEKRARKA 244

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
            +F +VK  I   +     ++ V +  +  +        +D+ +   K        
Sbjct: 245 PAFDQVKPQIEQFVTRKAQADYVAKLRETAKIER-----LDKPAEPAKAGGDKTGP 295



 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 91/264 (34%), Gaps = 15/264 (5%)

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVS--IDLPLVDFAGKDV 425
            D+   +     SE  + D    EE L  G   MD  +++E ++S  ID+ ++  A +D 
Sbjct: 38  DDLNPVLAKVNGSEIRQSDVNVAEEELGPGLAQMDPAAKQENVLSFLIDMKIIAKAAEDK 97

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
           K +       +          D  L+ +   A+ D     ++   +  ++    EE   +
Sbjct: 98  KIENSEDFKKRLAFARDRLLMDKLLASEGKAAITDE---AMKTVYADASKQITSEE---E 151

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
           V      V T EE        V +  K+G +F ++ K        ++  +      +   
Sbjct: 152 VHARHILVPTEEEAKK-----VEDELKKGADFAELAKKESKDPGASDGGDLGFFTKEQMV 206

Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605
            +     F+     +   P++    + + KV   +       D+    + Q + +     
Sbjct: 207 PEFSKVAFALEPGKI-SDPVKTQFGWHIIKVEEKRARKAPAFDQVKPQIEQFVTRKAQAD 265

Query: 606 VIAYLKSQYSVTVHDNLIQRYLDG 629
            +A L+    +   D   +    G
Sbjct: 266 YVAKLRETAKIERLDKPAEPAKAG 289



 Score = 38.0 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 52/149 (34%), Gaps = 9/149 (6%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           +E+ K++E+ L  G    E++++E       P     G      +   +P   ++ F + 
Sbjct: 162 EEEAKKVEDELKKGADFAELAKKES----KDPGASDGGDLGFFTKEQMVPEFSKVAFAL- 216

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
              +P      V    G +  ++++E    +    ++V   +++       A+ V+    
Sbjct: 217 ---EPGKISDPVKTQFG-WHIIKVEEKRARKAPAFDQVKPQIEQFVTRKAQADYVAKLRE 272

Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
              +E   +       G +        N 
Sbjct: 273 TAKIERLDKPAEPAKAGGDKTGPAKPANG 301


>gi|323706239|ref|ZP_08117806.1| PpiC-type peptidyl-prolyl cis-trans isomerase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534403|gb|EGB24187.1| PpiC-type peptidyl-prolyl cis-trans isomerase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 301

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 12/155 (7%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           K +++++ E    Y  NK ++   E+     ++  ++K A+E +  L KG  F  LA++ 
Sbjct: 141 KNVKVTDSEALKYYNDNKSQF---EVVKASHILVSDEKTANEIYDKLMKGANFADLAKQY 197

Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
               S       LG F++  +      D+ F+L K G+ +  +   +GY I      +  
Sbjct: 198 SIDTSTKDNGGELGEFTRGTMVK-EFEDAAFAL-KPGEISKPVKTQYGYHIIK---SEAK 252

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +T SF E K  I + +   K  +   +  + L++ 
Sbjct: 253 YTKSFDEAKSSIISYLENNKKQDIFNQKSEALKKA 287


>gi|282882218|ref|ZP_06290857.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B]
 gi|281297983|gb|EFA90440.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B]
          Length = 375

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 100/244 (40%), Gaps = 31/244 (12%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           + G      + S L +DQ  +        +  ++            ++ + +  ++YK  
Sbjct: 65  LEGPIDPTGKQSKLTVDQYLKDITIKDLTETEIIKQDAAANNIKVEDSEIQKILDQYKAQ 124

Query: 224 YRAPEYKRISYILFDV-------------------HEKEKKIEISNDELQAEYEKNKEKY 264
               E  +       +                    EK K I++++D+++  Y+++K+ +
Sbjct: 125 LGGDEQFKAYLDSLGIPLDYLKEVLKNQTLVGKYTQEKNKNIKVTDDDVKKYYDEHKDDF 184

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320
           F         ++  + K+A+E  + + KG KF ++A+++ K          LG F+   +
Sbjct: 185 FKA---KASHILVDDLKKANEIKKEIDKGAKFEEMAKKESKDTGSATNGGDLGEFTNGQM 241

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
              S  D+I  + +KG+ +  I   FG+ I  +   KP    +F EVK +I +++   K 
Sbjct: 242 V-QSFNDAIKKM-EKGEISDPIKSDFGFHIIKLKERKP---RTFDEVKDEIKSKLTQEKY 296

Query: 381 SEKV 384
            + +
Sbjct: 297 EKAI 300


>gi|258593862|emb|CBE70203.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 337

 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 79/201 (39%), Gaps = 5/201 (2%)

Query: 2   LEIIRKASRTWVAK---IFLVVLFVPFLIWGLSDALFSVSG-SSTVVSVGRQKVPFSSFI 57
           L+ IR  ++        +    +   FL+WG      +  G  + + +V  +++P++ + 
Sbjct: 6   LKRIRGYTKALSVTLWLVIFAFIGTTFLVWGFRSTSGTGGGVVNPIGAVEGEQIPYAEYQ 65

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            +++++     +K+G   + +    + L  ++++ L+    L      +GL      +  
Sbjct: 66  QAYQRQYQQYQEKLGDKFDEKILEQLNLKGQVVEGLIGRHLLLHEANRLGLVISPDELVA 125

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           EI   P F      F  D ++  L    +  + + +   + L    V     GG+     
Sbjct: 126 EITAIPAFSDATG-FKRDKYLRTLQSARLTPERFEESLREDLLLRKVEEWVKGGVHLIPD 184

Query: 178 LLDQAKRFYFENRSVDYIVLN 198
              +A RF   +   +Y++ +
Sbjct: 185 ETWEAFRFNRASVKAEYVMFS 205



 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 88/244 (36%), Gaps = 12/244 (4%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            K+L + ++ G  V G+   +LLL +A R      S D +V     +PA +D +     +
Sbjct: 85  EKILEQLNLKGQVVEGLIGRHLLLHEANRLGLVI-SPDELVAEITAIPAFSDATGFKRDK 143

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKK-----IEISNDELQAEYEKNKEKYFSPEIR 270
           +    +     PE    S     +  K ++     + +  DE    +  N+      E  
Sbjct: 144 YLRTLQSARLTPERFEESLREDLLLRKVEEWVKGGVHLIPDETWEAFRFNRAS-VKAEYV 202

Query: 271 TVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLAD 327
               L    Q+ A +    L K  K + ++    G         S+ +   +IPD     
Sbjct: 203 MFSDL--KTQQAAVQNVAGLAKSNKPWEEIVRASGLKPVTSDFFSWDRSLPHIPDQERFK 260

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
               + ++G  +P+I G     +  V + K      F+  K   +  +   K  +   + 
Sbjct: 261 EAALVMERGAVSPIIQGEKASYLLRVIDRKDPDAAEFEREKAQFSRGLLQRKREQVFADW 320

Query: 388 YKRL 391
            +++
Sbjct: 321 IRQV 324


>gi|227499517|ref|ZP_03929624.1| possible peptidylprolyl isomerase PrsA [Anaerococcus tetradius ATCC
           35098]
 gi|227218396|gb|EEI83647.1| possible peptidylprolyl isomerase PrsA [Anaerococcus tetradius ATCC
           35098]
          Length = 360

 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 109/251 (43%), Gaps = 19/251 (7%)

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR--FYFENRSVDYIVLNNRHVPA 204
           +E  +        S+  +    V  M    L+ +  K+     +++ VD  ++ +     
Sbjct: 64  SEMSFYASMLA--SQQQLKNSIVTMMVQDKLIANDIKKNNIKIDDKDVDNALMQSVQNFG 121

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
             +  +  L   +      ++    K + Y        ++  ++S+DE++  +E+NK+++
Sbjct: 122 GQEQFDKTLDD-YNMDIKKFKETLKKDLMYKKHREW-FDENNKVSDDEIKKYFEENKDQF 179

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYI 320
                     ++  +++ A E    L  G+ F +LA+E  K      +   LGSF K  +
Sbjct: 180 T---KVDASHILVDDEETAKEIKAKLDNGEDFAKLAKEYSKDTASAKNGGELGSFGKGQM 236

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 ++ FS+ K+G+ +  +   FGY I  +++I      S+++ K++I  +++  K 
Sbjct: 237 VK-EFEEAAFSM-KEGEISNPVKSQFGYHIIKINSISD----SYEKSKEEITKKIKDKKY 290

Query: 381 SEKVKEDYKRL 391
           ++ +K+ +   
Sbjct: 291 ADYIKKLHDEA 301


>gi|91218479|ref|ZP_01255419.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Psychroflexus
           torquis ATCC 700755]
 gi|91183360|gb|EAS69763.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Psychroflexus
           torquis ATCC 700755]
          Length = 704

 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 83/686 (12%), Positives = 194/686 (28%), Gaps = 149/686 (21%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           L  IR+  RT    + + +    F++  L  +    S   +S+V  +G +++    F   
Sbjct: 4   LSKIRE--RTVFLIVIIALALFAFVLTDLFKNGGFSSDKATSSVGVIGDEEIGREEFAAE 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV---- 115
            +  +     ++  +  + +A    L +           L Q  E +GLE    ++    
Sbjct: 62  VENIVQQSQGRVSTLQAANQAWENNLRR---------TLLKQEFESLGLEVGADQITDAM 112

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE-------YIDHYTKMLSRTDVVGMF 168
             ++   P F      F        +A   I   +       +               M 
Sbjct: 113 SQQLVGDPRFSNDAGFFDEAKLKQFIAELKITSPQQYQQWVNFEQSMEVNAKSQLYFNMV 172

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDY----------IVLNNRHVPAIADPSNAVLTQ--- 215
             G++ + L   Q      +N + ++          + +    +    +       Q   
Sbjct: 173 KAGVQTTLLEGKQIYHQENDNLTFEFVKVPFDKGEEVEVTKSDIQNYINVHKERFQQDAK 232

Query: 216 ------WFEKYKDN------------YRAPEYKRISYILFDVHEKEKKIE---------- 247
                 +FE+                    E    S  L + +  +   E          
Sbjct: 233 RNLEYVYFEETPSEEDNSFVLDEVTKLTTDEKVEQSEGLSNFNTTDNVQEFIAVHSETPY 292

Query: 248 -----------------ISNDELQA----EYEKNKEKYFSPEIR-------TVEQLVFP- 278
                            I   ++       YE    K      R           ++   
Sbjct: 293 NDNYTFEYNMKGEFALAILELDVNDVYGPYYENESYKISKLVERTQKADSVKTSHILVTY 352

Query: 279 -----------NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLG----SFSKE 318
                       ++EA     SL     +   KF +LA E          G      +  
Sbjct: 353 NGSRVDASVTRTKEEAKVLADSLTDVVRRNSDKFAELAGEFSSDRQSAENGGQLNWITYG 412

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
            +      D +F  AK      ++   FG+ + ++ +            +  + + +++ 
Sbjct: 413 ALV-PEFNDYVFDEAKVN-SYGLVETDFGFHVIYLED------------RTSLKDALKVA 458

Query: 379 KASEKVKEDYKRLEEFLALGTSMDEIS------RREKIVSIDLPLVDFAGKDVKGKEVAA 432
             +++V+   K L E     +  +  +      +      + +  V+  G +   + +  
Sbjct: 459 TVTKRVEPSEKTLNELYRSSSKFELSAKDNDFRKEADSTGLTVKPVN--GINKLDESIPG 516

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
           +  +  ++   F  +       +     G Y+  ++ +      +  EE    V    + 
Sbjct: 517 VGRQRSIVKWAFEGETKTGDIKSFDTGSG-YIVARVTKISKKGLQSTEEASAIVTPILRK 575

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN--ENKFFGYDGIS 550
            K AE++ S+          EG++   +    G +    + +N  +            + 
Sbjct: 576 QKQAEQIKSQI---------EGQDLNAVASLFGVNKQKASSVNISNPFIPGGGTEPKIVG 626

Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKV 576
             F+  V  +   P++      V K+
Sbjct: 627 AAFAMSVNDI-SKPLQGKTGVYVIKL 651



 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 75/234 (32%), Gaps = 25/234 (10%)

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV----SLADSIF-SLAKKGDFTPVIHGS 345
            K   F + A+  G ++  ++  +   E IP V    S+    F    K GD      GS
Sbjct: 485 AKDNDFRKEADSTGLTVKPVNGINKLDESIPGVGRQRSIVKWAFEGETKTGDIKSFDTGS 544

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
            GY++A V+ I      S +E    +   +R  K +E++K   +        G  ++ ++
Sbjct: 545 -GYIVARVTKISKKGLQSTEEASAIVTPILRKQKQAEQIKSQIE--------GQDLNAVA 595

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
               +       V+ +   + G               V     PL               
Sbjct: 596 SLFGVNKQKASSVNISNPFIPGGGTEPKIVGAAFAMSVNDISKPLQGKT-------GVYV 648

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
           +++ E   A+               +T K    + +     ++E  K  K   D
Sbjct: 649 IKLLEKNGAQALP----SYRAVAKEETEKRTRSLLNPRTSPIIEALKNSKEIED 698


>gi|90020386|ref|YP_526213.1| L-ribulokinase [Saccharophagus degradans 2-40]
 gi|121956457|sp|Q21MS8|SURA_SACD2 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|89949986|gb|ABD80001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus
           degradans 2-40]
          Length = 430

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/407 (12%), Positives = 124/407 (30%), Gaps = 62/407 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +  +   +  +      SQ  G  +         L+K+I+D L+S    
Sbjct: 31  DRVVAVVDNRAITQTELDSRVQDVQVR-SQAAGMRLPEADI----LNKQIIDQLISETLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            +  +  G++     V   I        ++ + +   FV +LA EG++  E+     + L
Sbjct: 86  LEMADRYGVQVSDQEVNASIGNI----IQNAQMTEQQFVQQLASEGVSINEFRASIRRQL 141

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD--------YIVLNNRHVPAIADPSN 210
           +   +    V   +R S   +D   +       V          + L +         + 
Sbjct: 142 TMRSITEGLVSRRIRISEQEVDNFLKSADAQFWVSPDYHLGHILVALPSSPSSEAIVEAE 201

Query: 211 AVLTQWFEKYKD--NY----------------------RAPEYKRISYILFDVHEKEKKI 246
                 +EK K   N+                      ++ E   +   L          
Sbjct: 202 EKANALYEKLKAGANFAEVAIAESNGPSALQGGDLGWRKSAELPTLFAELLPSLNNGDVT 261

Query: 247 EISNDE----LQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLKKG 293
           + +  +    +   YE    +           ++            + +  +  Q +  G
Sbjct: 262 KPTRSQAGFHIIKLYESRGGQKQIVNQTRARHILVKTSEILNDAKAEAKLKDIRQQILDG 321

Query: 294 KKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
             F +LA+   + +    S   LG  +       +   ++ +  K+G+ +      FG+ 
Sbjct: 322 ADFAELAKTHSEDIGSRMSGGDLGWATPGTFV-PAFEKTM-AETKEGEISQPFKSRFGWH 379

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           I  V   +       + +++   N +   +  ++ +   + L +   
Sbjct: 380 IMKVEERREEDMTQ-EALRQKARNMIMSRRFEDETQIWLQELRDEAF 425



 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 75/205 (36%), Gaps = 26/205 (12%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278
           + +RA   ++++          ++I IS  E+    +    +++      +  ++     
Sbjct: 131 NEFRASIRRQLTMRSITEGLVSRRIRISEQEVDNFLKSADAQFWVSPDYHLGHILVALPS 190

Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLA 326
                     +++A+  ++ LK G  F ++A  +     +L    LG      +P    A
Sbjct: 191 SPSSEAIVEAEEKANALYEKLKAGANFAEVAIAESNGPSALQGGDLGWRKSAELP-TLFA 249

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRITKAS 381
           + + SL   GD T       G+ I  +   +        + +        +  +   KA 
Sbjct: 250 ELLPSL-NNGDVTKPTRSQAGFHIIKLYESRGGQKQIVNQTRARHILVKTSEILNDAKAE 308

Query: 382 EKVKEDYKRLEEFLALGTSMDEISR 406
            K+K+  +++ +    G    E+++
Sbjct: 309 AKLKDIRQQILD----GADFAELAK 329


>gi|15893571|ref|NP_346920.1| peptidil-prolyl cis-trans isomerase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023118|gb|AAK78260.1|AE007541_5 Peptidil-prolyl cis-trans isomerase [Clostridium acetobutylicum
           ATCC 824]
 gi|325507691|gb|ADZ19327.1| Peptidil-prolyl cis-trans isomerase [Clostridium acetobutylicum EA
           2018]
          Length = 247

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 71/168 (42%), Gaps = 5/168 (2%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           ++       + +    I +++ E++  YE NKE +  PE    + ++   +++A +  + 
Sbjct: 76  RKQILTHASLDKIFSDIVVADSEVEKYYEANKEMFKDPEKVAAKHILVQTEEDALKIREE 135

Query: 290 LKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           +K+GK F + A E     S      LG+F++  +      ++ FS  + G+    +   F
Sbjct: 136 IKEGKTFEEAAAEYSSCPSKERGGDLGAFTRGQMV-PEFEEAAFS-QEIGEVGAPVKTQF 193

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           GY +  V          F  VK  I N++   + S K      +L+  
Sbjct: 194 GYHLIKVEGKIEPAQRDFPSVKDAIKNRLLQERQSMKYSWYIDQLKNK 241



 Score = 38.0 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 12/140 (8%)

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
             V      V+T E+        + E  KEGK F +      +        +        
Sbjct: 114 EKVAAKHILVQTEEDALK-----IREEIKEGKTFEEAAAEYSSCPSKERGGDLGAFTRGQ 168

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFISYLTQMM 598
              +     FS  +  V   P++    Y + KV   K+ P Q      KD   + L Q  
Sbjct: 169 MVPEFEEAAFSQEIGEVG-APVKTQFGYHLIKV-EGKIEPAQRDFPSVKDAIKNRLLQER 226

Query: 599 NKDLLDSVIAYLKSQYSVTV 618
                   I  LK++Y V +
Sbjct: 227 QSMKYSWYIDQLKNKYKVEI 246


>gi|148264649|ref|YP_001231355.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
 gi|146398149|gb|ABQ26782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
          Length = 326

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 114/355 (32%), Gaps = 79/355 (22%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V    +         ++     S ++    +    +   + ++ LDNL+    + Q  
Sbjct: 37  AVVNGAPISREECNGELERLKRSRSVRL---FSPALLKE--IQQEALDNLIRRELIYQES 91

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKMLSRT 162
              G+      V  E+AR         +F++++ F S L+   ++E    +         
Sbjct: 92  RKGGIGVAATAVDEELARLK------TRFANEMEFSSALSSLHVSEASLRNIV------- 138

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
                                      R +      +R     +  ++     ++  + D
Sbjct: 139 --------------------------ERGIAVRTYIDRQFAGQSTVTDEEKKGYYRSHPD 172

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
            ++ P   RIS+IL        K                                  +K+
Sbjct: 173 TFKRPLQVRISHILVRTGGMTGKAR-----------------------------AEAEKK 203

Query: 283 ADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
            +   + + KG+ F  LA      G       LG F +  +  V + D++  L K G+ +
Sbjct: 204 IEGIREKVGKGESFDALARAYSECGSKEQGGDLGFFRRGEMARV-VEDAVMDL-KVGETS 261

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            ++   FG  +  +++ KP   ++++  +  I+  ++  KA EK       L + 
Sbjct: 262 GIVEDRFGLHLIRLTDRKPEQVIAYEAAEGKISEYLKQEKAMEKANRYAGDLRKK 316


>gi|255534296|ref|YP_003094667.1| Peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae bacterium
           3519-10]
 gi|255340492|gb|ACU06605.1| Peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae bacterium
           3519-10]
          Length = 716

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 81/730 (11%), Positives = 194/730 (26%), Gaps = 144/730 (19%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L  IR   R W+    + V  + F++   S      +       V  +++    + +   
Sbjct: 4   LGQIRN--RPWLLMGIIAVAMLAFVVNPDSLEQLFGAKPGVYGKVNGEEITKEEYDDQL- 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                    +      +   + GLD++    +V    + Q  + +GL       W ++  
Sbjct: 61  -------FMLQQQAQQQGQPATGLDEQAWQMMVQSKLIKQQFDKMGLTLTEDMFWNQLQF 113

Query: 122 SPLFHGKDNKFSH----------------------DVFVSRLAREGINEKEYIDHYTKML 159
            P+F      F                        +++ + L                 +
Sbjct: 114 DPMFAQNQENFDAKGNFKGQEIKKQIAELQTSGNVEMYNNWLRTRR--------TIEYRM 165

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFE------------------------------- 188
               V      G+  S    ++  +   +                               
Sbjct: 166 MARQVFANVSTGITASKKEAEEMMKQRDQVANIDFVKIDYNSYAQKNPVKVTTQDLADYI 225

Query: 189 -----------NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY------KDNYRA----- 226
                      +R++  +       P     + A + + F +       K+N++      
Sbjct: 226 KKHPILFKRDASRNIGLVYFPAAASPQDEAVTQAEINKLFAQGTEMSGGKENFQNTTNDS 285

Query: 227 ------------PEYKRISYILFDVHEKEKKIEISND----ELQAEYEKNKEKYFSP-EI 269
                       P+Y     +   + +K     +       + Q  Y  +K     P + 
Sbjct: 286 MFVSLNSDLPFNPQYFSAEQLPVSIKDKVAAASVGTTFGPYKEQNFYVVSKLLDKKPSDS 345

Query: 270 RTVEQLVFP------------NQKEADEAFQSL--------KKGKKFIQLAEEQGKSLSD 309
                ++              +++EA +   S+        +K  +F++ + + G +   
Sbjct: 346 TLSRHILVSYKGNQAGGNETRSKEEAKKLADSIGAVLKSAPQKFTEFLKYSADPGSAGQG 405

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGD-FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
            S+G  +        +   +  LA  G   T V+   +GY I ++ + K        +V 
Sbjct: 406 GSVGWTTPAT---PFVPQYLSFLANNGKGATGVVETDYGYHIINIEDKKTGAMT--YKVA 460

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
             +       K   +V     R  + +  G S ++ S   K  +         G+     
Sbjct: 461 NLVKTIKASDKTENEVYTKATRFIQQV-QGKSFNDFSNLAKKGNYQFFNPKEIGRFSGQL 519

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVAL-PDGSYMWVQIKESIPARDRKLEEVLTDVK 487
                   + ++   F K           +   G  +   +     A     E V   ++
Sbjct: 520 PGLGTDKDQDIIAWAFHKKRSKGDTEIFTVDGTGDRIVAYVNGIQDAGTADPEAVRDQIE 579

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
              K    A+ +  K N           +   I K  G++ ++                 
Sbjct: 580 PIIKNKILAKRIVEKINTTKA------SSLDQIAKAFGSTKMSGQVNMLSPQVAGAMEPK 633

Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
                F      +          YV+ K + +      +  +    +    ++    +++
Sbjct: 634 VAGAAFGVAKGKLSMPVEGMTGVYVLVKNSETINKQPGDIKQVTQAIAGQNSQQFGQALL 693

Query: 608 AYLKSQYSVT 617
             L+    + 
Sbjct: 694 KSLQDNADIE 703


>gi|78189176|ref|YP_379514.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium
           chlorochromatii CaD3]
 gi|78171375|gb|ABB28471.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium
           chlorochromatii CaD3]
          Length = 697

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 78/651 (11%), Positives = 196/651 (30%), Gaps = 86/651 (13%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLI-----WGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
           L  +R  +      I L VL   FL      WG+          +    V    + +  +
Sbjct: 4   LSSLRNKTH-----IILYVLLASFLALIVFEWGMESNFIKPQ--NVAGKVNGASISYQEY 56

Query: 57  INSWKQELGMISQKIGFV-VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            N++K     + +    + +  E      L ++  ++LV    L++     G+      V
Sbjct: 57  DNAYKALSENVRRANPELELTPEM--EHELQERAWNSLVDQRLLEEQFRKFGITVQDREV 114

Query: 116 WGEIARSPL--------FHGK-DNKFSHDVFVSRLA--REGINEKEYIDHYTKMLSRTDV 164
                 SP         F      K       S            +   +    L    +
Sbjct: 115 LEA-MNSPQPPMVIRQYFTDPATGKVDRQKLESARRDPANRDMWLQLEKYVRMELQENKL 173

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA--DPSNAVLTQWFEKYKD 222
           +  F    R ++  +           +  +I L             ++  + ++++++K+
Sbjct: 174 LRAFQTFERVTDREISDMINRKVSLFTASFIPLPLSAAGDDKRFPITDDDIKKYYDEHKE 233

Query: 223 NYRAPE-YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
            +R  +  +++  + F +    K       EL                            
Sbjct: 234 QFRQEKPSRKVETVFFPLVPSAKDSAAVRQEL---------------------------- 265

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK--KGDFT 339
             +       K +  +   + Q    +  ++     ++ P     ++IF+ +    G   
Sbjct: 266 --EALRADFSKSQNDVDFVKVQSDRSNSANVVLTRADFSPLA--GNAIFNTSSLAAGSLI 321

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
                +  + +  V  ++P+     +     +          EKV++   ++ + L  G 
Sbjct: 322 GPFADNGEFRLLKVVRVQPAVQPIARASHILLRFNPANKAEIEKVQQLTMQIGQQLQAGV 381

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
             + ++++              G     + V       +    VF       +   +  P
Sbjct: 382 PFETLAKQYSADPGSAENGGDLGWFSPDRMV------PEFSKAVFNS-----RPGAIIGP 430

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWK-TVKTAEEVSSKANQLVLEYSKEGKNFR 518
             +   V I +      R L  V ++V +  + + ++ E    +A    ++  ++G  F 
Sbjct: 431 IQTQFGVHIIKVTGFDQRAL--VASEVVRTIRSSSESMESQRRRAMAFQVDAKEKG--FA 486

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSYVVFKVT 577
                 G  +  +N+  R          D ++   FS     +    IE+   + V ++T
Sbjct: 487 KSAATAGVKVEESNEFTRRMAIRPLGYNDKVATFAFSAKEGDI-SDVIESKKGFYVARLT 545

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ--YSVTVHDNLIQRY 626
                    +        ++  + L++   A L+ +   +  V +  +++ 
Sbjct: 546 AKH--DEGYRSLDKDAKERIKQELLVEKKGAALQQKLTAAAKVPNATLEQI 594


>gi|166030348|ref|ZP_02233177.1| hypothetical protein DORFOR_00009 [Dorea formicigenerans ATCC
           27755]
 gi|166029868|gb|EDR48625.1| hypothetical protein DORFOR_00009 [Dorea formicigenerans ATCC
           27755]
          Length = 260

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 75/169 (44%), Gaps = 6/169 (3%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           ++       + +    ++++++E++  YE NK ++        + ++  ++++ ++  +S
Sbjct: 90  RKDILARLAMKQLFDSVKVTDEEVKDYYEANKSQFKKGATVHAKHILTDSEEKCNQILES 149

Query: 290 LKKGKK-FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           +  G+K F   A+E     S      LG F K  +      D+ F+ A+ G     +   
Sbjct: 150 IVSGEKVFEDAAKEFSTCPSGQRGGDLGEFGKGQMVK-EFEDAAFA-AEIGHVVGPVKTQ 207

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           FGY +  V   K +   SF EVK+ I +Q++  K  +   +    L E 
Sbjct: 208 FGYHLIKVEEKKDAAESSFDEVKEQIKSQLKQQKQGDAYSKKVAELTEK 256



 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 47/159 (29%), Gaps = 5/159 (3%)

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
            +       + E  K    +     A   + +  ++  + L    S +++          
Sbjct: 107 KVTDEEVKDYYEANKSQFKKGATVHAKHILTDSEEKCNQILESIVSGEKVFEDAAKEFST 166

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
            P     G   +  +   +   E   F                     Y  ++++E   A
Sbjct: 167 CPSGQRGGDLGEFGKGQMVKEFEDAAFAAEIGHVVGPVKTQF-----GYHLIKVEEKKDA 221

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
            +   +EV   +K   K  K  +  S K  +L  +Y ++
Sbjct: 222 AESSFDEVKEQIKSQLKQQKQGDAYSKKVAELTEKYKEK 260


>gi|332703852|ref|ZP_08423940.1| SurA domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332554001|gb|EGJ51045.1| SurA domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 334

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 111/356 (31%), Gaps = 83/356 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL-DKKILDNLVSGAT 98
              V  V  Q +            L  +S   G  +N++  + + +  KK+LD LV    
Sbjct: 50  DRIVAVVNGQVITSYDLDRELAPYLMQLS---GRKLNAQDEQQLTVVRKKLLDRLVDDIL 106

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L    + + LE +   V   I +   F   ++    D+    L RE +  +EY  +  + 
Sbjct: 107 LLMEAKRLNLEVNDTEVENHIRQ---FRQSNSMTEEDLGRQ-LQRENMTREEYKRNIRES 162

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           + R  V+                                    V      ++  + ++++
Sbjct: 163 MLRHRVLSFM---------------------------------VRRKVLVTDEEILRYYD 189

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           ++K +Y   +   +  IL   +                                      
Sbjct: 190 EHKSDYTQAKEVELGLILLPPN-------------------------------------- 211

Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKG 336
             +++D   Q L K +  F + A +  K     S GS  +    +++       +    G
Sbjct: 212 --EDSDGLVQRLGKAEISFEEAARKYSKGPGAQSGGSIGRLKWSELASQWREALAQIHPG 269

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + +          I  +  I P    S  EV+++I  ++   K + +  E  + L+
Sbjct: 270 EISEPFSIDGNKAILKLKAIIPGKERSLDEVREEIRQKLYDPKYAVQYAEYMQDLK 325


>gi|319408175|emb|CBI81828.1| peptidyl-prolyl cis-trans isomerase [Bartonella schoenbuchensis R1]
          Length = 316

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 83/216 (38%), Gaps = 12/216 (5%)

Query: 182 AKRFYFENRSVDYIV--LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
             R   E R +  +   L+ +     A       T+ ++K      A     +   L+  
Sbjct: 76  LARLSDEQRRITVLKAYLDMQAFAKAAIEKGIDKTEVYDKR----MAIMRDNVLQQLYFK 131

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                KI+  + +LQA Y+K        +      ++   ++ A+   + LKKG+ F ++
Sbjct: 132 QMVVDKIQ--DADLQALYDKEVAALPKEDEVKARHILVKTKEAAEAIIKRLKKGESFEEI 189

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++     S      LG FS   +      D+ FSL         +   FG+ I  V + 
Sbjct: 190 AKKDSTDGSASVGGDLGYFSYGQMVKP-FEDAAFSLKVGEYTKKPVESPFGWHIIKVEDR 248

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +P    +F +VK+ +  Q+   +    + +   +++
Sbjct: 249 RPKQPPAFDDVKEVLRTQIMKDRYHALIIDLRNKVD 284



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 2/162 (1%)

Query: 468 IKESIPARDRKL--EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           + +   A  + L  +EV    K+D    +     + +A + +++  K+G++F +I K   
Sbjct: 135 VDKIQDADLQALYDKEVAALPKEDEVKARHILVKTKEAAEAIIKRLKKGESFEEIAKKDS 194

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
                +   +                 FS  V      P+E+   + + KV + +     
Sbjct: 195 TDGSASVGGDLGYFSYGQMVKPFEDAAFSLKVGEYTKKPVESPFGWHIIKVEDRRPKQPP 254

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
             D     L   + KD   ++I  L+++  V   D+ I + +
Sbjct: 255 AFDDVKEVLRTQIMKDRYHALIIDLRNKVDVKYPDSHIAKLM 296


>gi|253700324|ref|YP_003021513.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
 gi|251775174|gb|ACT17755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
          Length = 355

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 105/283 (37%), Gaps = 45/283 (15%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I + +       ML++  +             L  QA+    E  +   ++        I
Sbjct: 72  ITQLDVERAVKVMLAQNKIDQPL------PPELQKQAESAALEQLTAAELLYQEASKSKI 125

Query: 206 ADPSNAVLTQWFEKYKDNYRAPE--------------------YKRISYILFDVHEKEKK 245
            D  + ++ Q   + +  ++                        K I    +     + K
Sbjct: 126 PDL-DKMIEQKVSQNRQKFKTEAELVEALSALEMTLPDLEEFTRKEIVLSTYIAEHFQTK 184

Query: 246 IEISNDELQAEYEKNKEKYFS-PEIRTVEQLVF------------PNQKEADEAFQSLKK 292
             +S++E++  Y+ N   YF  PE      ++               +++A+   + L+ 
Sbjct: 185 ASVSDEEVKKFYDDNLNTYFKKPESVKASHILVGTDEKATPEDRKKAKEKAEALLKRLQA 244

Query: 293 GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           G++F  LA+++     +    +LG F +E +      ++ F L K G+ + V+   FGY 
Sbjct: 245 GEEFAALAKDESTCPSATQGGNLGEFGREEMV-PQFEEAAFKL-KPGEMSGVVETKFGYH 302

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           I  V+  + +     + VK+ I   ++  KA +++     +L+
Sbjct: 303 IIKVTGKQEAAAEKLESVKETIVEFLKKQKAQQELSSFIDKLK 345



 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
           +  ++   KA  L L+  + G+ F  + K+       T   N  +   +          F
Sbjct: 226 EDRKKAKEKAEAL-LKRLQAGEEFAALAKDESTCPSATQGGNLGEFGREEMVPQFEEAAF 284

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAY 609
                 +    +E    Y + KVT  +    ++    K+  + +L +   +  L S I  
Sbjct: 285 KLKPGEM-SGVVETKFGYHIIKVTGKQEAAAEKLESVKETIVEFLKKQKAQQELSSFIDK 343

Query: 610 LKSQYSVT 617
           LK +  + 
Sbjct: 344 LKKEAKIE 351


>gi|218777935|ref|YP_002429253.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759319|gb|ACL01785.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 334

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 110/292 (37%), Gaps = 43/292 (14%)

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L   G++  ++  +  ++L++  +   F  G       +   ++   E+ ++  +++  
Sbjct: 38  VLRVNGMDFHKWEMNLAEILTQDHM---FREGAFFRPSEIPAFRQAMMES-TIWAMLIYQ 93

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPE----------------YKRISYILFDVHEKE 243
               A      A + ++   ++  + + E                 +     +      +
Sbjct: 94  EARAAGEKADPAKVDEFIWSFQKRFPSLEAYEKGLEALHVTSEQFRRIAERYVMTQDYLD 153

Query: 244 KKIE----ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAF 287
           +K +    +S  E +  Y+ ++E ++  E+     ++   ++E            A    
Sbjct: 154 RKFDPLSKVSEAEAREYYDGHRENFYQEEMVRASHILVEFKEEDGDRADEKALITAKRIV 213

Query: 288 QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPV 341
           + LKKG+ F   A E     S      LG   K  +P      L + +F + + G+ +  
Sbjct: 214 RKLKKGENFAAAAREYSDCESKKRGGDLGYIQKGDLPKAQLKPLEEVVFGM-EVGEISEP 272

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           +   FGY I +V + KP   + F E+K  +  +M   + +  + +   +L+E
Sbjct: 273 VESVFGYHILYVEDKKPRTLLGFDEIKDKLIAKMTEDRKAAMILDHGTKLKE 324


>gi|261417144|ref|YP_003250827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373600|gb|ACX76345.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 643

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 86/664 (12%), Positives = 199/664 (29%), Gaps = 61/664 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  I + ++ WV  IF   + +  L     D +     S  +  V   K+ ++ F +  
Sbjct: 1   MLTWINEKAK-WVIVIFAAGIAIGLLAM---DRVPDQGRSYPIGIVNDTKISYTDFDSRV 56

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           K  +   +Q     ++ E+     L  ++  + V  A   +  E   L A    +  E  
Sbjct: 57  KMIVQ--NQYQNQHLDDEQ--YSQLRAQVFSSFVRQALFAEQYEKAELSASVAELKNE-- 110

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
               F    +       V          ++       ++ R+      +           
Sbjct: 111 ----FKRNSDAV-RARLVQEAQARLYAIQQQATSQEDLIQRSQAYLASLPKFLTDTTFNK 165

Query: 181 QAKRFYFEN-RSVDY-IVLNNRHVPAIADPSNAVLTQWFEK--YKDNYRAP---EYKRIS 233
                + E   +  +  +L+              L        +  +  A    E +   
Sbjct: 166 ADYDAWIETPAAYRWSAMLSLEDEMKNNSIPARQLQTLVGASVHPTSLEAKWSVERRMTD 225

Query: 234 YILF-----DVHEKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEA--DE 285
           Y L                + +  +   +  + + +F   +    + +  P +  A  D 
Sbjct: 226 YELQVAVAPSSAFVVDSNSVDSVMVAGYFNAHIDSFFVQKDAAQFQYVSIPVEATAGDDA 285

Query: 286 AFQSLK-----------KGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-----VSLADSI 329
           + +                  F  +A    +       G    E             ++ 
Sbjct: 286 SIREYAMTLYYQLTDSSSTTTFEDMARVSSEDPGSAEKGGILSEDFVGRGSYVKPFEEAA 345

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           F+L   G  +  +   FGY I        +     ++VK  + + +    AS    +  +
Sbjct: 346 FAL-DSGKISEPVRSQFGYHIIKSYGNVKNAKGEVEKVK--VGHILLTVTASSNTIDSLE 402

Query: 390 R-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
           + L        +  ++    +   +++   ++  +D     + A  Y + L    +  ++
Sbjct: 403 KILTNIKKDVDAGSDLLTEAQARGLEVKTSEWVSRDGN---IGAFGYLKGLASFAWPNEN 459

Query: 449 PLSKDHTVA--LPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
              ++  ++  L +  ++ + +   S  A +R L     D+K+     K  +   +  + 
Sbjct: 460 LPKEESEISGVLRNNKWVVIAKKIGSFTAGERSLPLYYNDIKETLLKQKAGKAAEAYLSS 519

Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
           +  +  KE        K     L T N           +G   I++V           P+
Sbjct: 520 VAAQ-VKEWNPADTAAKIEKVELETKNASVDGFVPGFGYGNAQIARVVGKAKAGEWTAPV 578

Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK----DLLDSVIAYLKSQYSVTVHDN 621
                 V+ KV + K   V+E ++ I        +       +  +  L++   V  + +
Sbjct: 579 VAENGAVMVKVVSKKTPKVEEVEEAIKQDVDNSYRFGVMTAFNDYVTSLEASTPVKSNLD 638

Query: 622 LIQR 625
           L  R
Sbjct: 639 LFYR 642


>gi|303238145|ref|ZP_07324681.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
 gi|302594191|gb|EFL63903.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
          Length = 249

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 75/179 (41%), Gaps = 6/179 (3%)

Query: 219 KYKDNYRAP-EYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           + +  Y    E  +++++  + + +  K + I+  E +  Y +NK  +  PE      ++
Sbjct: 63  ENETEYLEEIERIKVNFLKQYALSKFLKSVTINEVEAKKFYNENKGLFNEPESVKASHIL 122

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLA 333
             ++  A++    + +GKKF   A+E        +   LG FSK  +       + F+L 
Sbjct: 123 VQDEATANKILSEIDEGKKFEDAAKEYSTCPSKANGGDLGFFSKGQMV-PEFETAAFALD 181

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           K       +   FG+ I  ++  + +  ++F E +  +  ++   K   +  +    L+
Sbjct: 182 KGEITKTPVKTQFGFHIIKLTGKRDAMELTFSEAEDKVKAELMAKKQQAEYYKKVDELK 240


>gi|154175136|ref|YP_001408066.1| trimethylamine-n-oxide reductase 1 [Campylobacter curvus 525.92]
 gi|112802868|gb|EAU00212.1| trimethylamiNe-n-oxide reductase 1 (tmaoreductase 1)
           (trimethylamine oxidase 1) [Campylobacter curvus 525.92]
          Length = 272

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 100/238 (42%), Gaps = 23/238 (9%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++   + G   S L  ++ KR   +  +   ++ + +      DP      ++ +  +  
Sbjct: 39  LLAAAMPGFDASKLQPNEKKRIIDDLINRKLLLKDAKASGIEKDP------EYIKAVQA- 91

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
             A E   +   +    +    I+ S+DEL+  Y KNK+    P       ++  ++K A
Sbjct: 92  --AQEGIAVELYM---RKIFDGIKTSDDELRNFYNKNKDSLNQPAQARASHILVEDEKTA 146

Query: 284 DEAFQSLKK------GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
           +     LK        KKF +LA+    ++G +     LG F +  +     AD++FS++
Sbjct: 147 NAIIAQLKNLKGDALAKKFAELAQADSIDKGSAAHGGELGWFGQSQMVKP-FADAVFSMS 205

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           K    T  +   FGY I    + KP+  VSF++ K  I   +++ K    +++    L
Sbjct: 206 KGSVSTKPVKSQFGYHIILKEDSKPAGVVSFEQAKPQIEQAVKMEKFQNTIRQKGDAL 263



 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 4/164 (2%)

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           I            +F    KD  NQ    +AS  + ED K     +A   ++   +  +K
Sbjct: 105 IFDGIKTSDDELRNFYNKNKDSLNQPAQARASHILVEDEKTANAIIAQLKNLKGDALAKK 164

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKE---QLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
              +        G    G E+      +        VF           V    G ++ +
Sbjct: 165 FAELAQADSIDKGSAAHGGELGWFGQSQMVKPFADAVFSMSKGSVSTKPVKSQFGYHIIL 224

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
           + ++S PA     E+    +++  K  K    +  K + L  + 
Sbjct: 225 K-EDSKPAGVVSFEQAKPQIEQAVKMEKFQNTIRQKGDALRAKA 267


>gi|118445143|ref|YP_879240.1| peptidil-prolyl cis-trans isomerase [Clostridium novyi NT]
 gi|118135599|gb|ABK62643.1| peptidil-prolyl cis-trans isomerase [Clostridium novyi NT]
          Length = 247

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 70/165 (42%), Gaps = 5/165 (3%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           +     V++   ++E+++ E++  Y  NK  +   E+ + + ++   ++ A E  + +K 
Sbjct: 79  ALTQLSVNKVLSQVELTDKEVEDYYNANKSNFVVGEMISAKHILVDTEELAKEVAEEIKN 138

Query: 293 GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           G  F   A +     S     +LG F K  +      ++ F+L + G  +  +   FGY 
Sbjct: 139 GMTFGDAATKYSTCPSKAQGGNLGKFGKGQMV-PEFEEAAFNL-EIGKVSEPVKTQFGYH 196

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +  V   + +   SF EVK  I   +   +   K     + L++ 
Sbjct: 197 LIQVEEKQEATEKSFDEVKDLIRTNLLQERQKVKYATTVEELKKK 241


>gi|209883242|ref|YP_002287099.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
           carboxidovorans OM5]
 gi|209871438|gb|ACI91234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
           carboxidovorans OM5]
          Length = 301

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 67/155 (43%), Gaps = 5/155 (3%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           + E K  ++++ L+  YE+  ++    +      ++   + EA      LKKG  F +LA
Sbjct: 123 DNEGKAALTDEALKKVYEEASKQISGEQEVHARHILVETEDEAKAIVAELKKGADFAELA 182

Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +++ K         LG F+K+ +     + + F+L + G  +  +   FG+ I  V + +
Sbjct: 183 KKKSKDPGASDGGDLGYFTKDQMV-PEFSTAAFAL-ETGKISDPVKSQFGWHIIKVEDKR 240

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                 F++VK  +   +     ++ V +     +
Sbjct: 241 ARKAPPFEQVKPQLEAFVIRKAQADYVAKLRSEAK 275



 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 51/143 (35%), Gaps = 4/143 (2%)

Query: 477 RKLEEVLTDV--KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           +  EE    +  +++        E   +A  +V E  K+G +F ++ K        ++  
Sbjct: 137 KVYEEASKQISGEQEVHARHILVETEDEAKAIVAEL-KKGADFAELAKKKSKDPGASDGG 195

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
           +           +  +  F+     +   P+++   + + KV + +       ++    L
Sbjct: 196 DLGYFTKDQMVPEFSTAAFALETGKI-SDPVKSQFGWHIIKVEDKRARKAPPFEQVKPQL 254

Query: 595 TQMMNKDLLDSVIAYLKSQYSVT 617
              + +      +A L+S+  V 
Sbjct: 255 EAFVIRKAQADYVAKLRSEAKVE 277


>gi|332883586|gb|EGK03867.1| hypothetical protein HMPREF9456_01408 [Dysgonomonas mossii DSM
           22836]
          Length = 708

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 102/724 (14%), Positives = 216/724 (29%), Gaps = 128/724 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S   +  I L +L   F++     + F         +V  + V    + +   
Sbjct: 4   LQKIRSKSSLLIGVIALGLLA--FVLPWSEISSFINKSKDKAFTVDGEVVTTRQYQDRIA 61

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
           Q      + +    + +   ++ + + +   +V    LD+    +GL      +   +  
Sbjct: 62  QW-EHFQKIMSGQNSLDENATLQIREMVYQQMVKEIILDKQAAQLGLNVTKEELNDMVTG 120

Query: 121 --------RSPLFHGK-DNKFSHDVFVSRLA-----REGINEKE------------YIDH 154
                   + P F      +F        +         + E +            +I +
Sbjct: 121 PNVAPILHQIPFFVNPQTGQFERAALNQFIQTISQDDTNLPENQRAEIQARREIWTFIQN 180

Query: 155 YTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA---IADPSN 210
             K     +     V G + P++     A        S+ Y+V     +       + ++
Sbjct: 181 MMKYQRLEEKYSAIVAGIVIPTDTEAKSAFDDSKTQASISYVVQKYASIADSLVAKEVTD 240

Query: 211 AVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE----------------L 253
             +   +++ K+N++   E ++ISY + DV   ++       E                L
Sbjct: 241 KDIKALYDQRKNNFKLESELRKISYFVKDVVPSDEDYAAVEKEINAIHDKFVATDNPGLL 300

Query: 254 QAEYEKNK------------------------EKYFSPEIRTVEQLVFP----------- 278
             EY  N+                         +   PE      +++            
Sbjct: 301 VNEYSNNQYVDAFISVNTLPADMKEFAQAATIGQVNGPERNEQSYIMYKLVDRTSAADSV 360

Query: 279 -----------NQKEA----DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
                      +Q  A    D     +K GK F  LA E     +  ++G  ++  +   
Sbjct: 361 KLQMIPLPQGLDQATATHISDSLLNVIKGGKDFSALANELMPGSNGGNIGWATEMALAGA 420

Query: 324 --SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ--MRITK 379
              L    F  AK GD   V   +    I  V +           VK  +     +   K
Sbjct: 421 GGDLIKKCFGAAK-GDVFNVSI-NGQTQIVRVEDKTNPVAK----VKIALIQMPVIVSDK 474

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
               V      L +F+A   ++            ++  +  A        +  +    Q+
Sbjct: 475 TQNSVD---NELNQFVAENGNVQNFDNAALTKGYNI--ISNAVVSPSDMLLGQVAGSRQV 529

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           +   F  +   S      L +   + V   E        + EV   +K +    K     
Sbjct: 530 ISWAFN-NKVGSVKKFDNLTNKRIIAVVKNEIS-GDYMPVSEVSAMLKAELINDK----- 582

Query: 500 SSKANQLVLEY-SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
             KA +++ +  +K   +     + +   + T N +    N     GY+ +  V++   +
Sbjct: 583 --KAEKIIADLKAKNLTSLDGYAQAIAGRVDTVNFVTFQTNNISGVGYEPLLNVYAKHGQ 640

Query: 559 MVK-CFPIENGLSYVVFKVT-NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           + K   P +      V  VT  ++     +  +    + Q     L+   +  LK + +V
Sbjct: 641 VNKLEAPKKGKSGVYVIDVTSKTENAATFDPAQSKQMIRQSNMYQLMSQAMLVLKEKMNV 700

Query: 617 TVHD 620
             + 
Sbjct: 701 KDNR 704


>gi|152990310|ref|YP_001356032.1| peptidyl-prolyl cis-trans isomerase [Nitratiruptor sp. SB155-2]
 gi|151422171|dbj|BAF69675.1| peptidyl-prolyl cis-trans isomerase [Nitratiruptor sp. SB155-2]
          Length = 272

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 10/163 (6%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------ 292
           + +K   I++++ E +A Y+KN +K+  PE+     ++  ++KEA +    LKK      
Sbjct: 102 MKKKYDSIKVTDKEAKAFYQKNIDKFKRPELVHARHILVKSEKEAQDIINELKKTPKNQL 161

Query: 293 GKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
            +KFI+LA+ +    S      LG F K  +     +D+ FSL      T  +   FGY 
Sbjct: 162 KQKFIELAKTKSVGPSGKRGGDLGFFKKGQMVKP-FSDAAFSLKPGTFTTKPVQTQFGYH 220

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           I +V   KP+ T+ F ++K  I  Q+++ K  E V+++ ++L+
Sbjct: 221 IIYVEEKKPAGTIPFDQIKDRIKAQLKMKKFQEIVQKEAEKLK 263



 Score = 38.4 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
             F           V    G ++   ++E  PA     +++   +K   K  K  E V  
Sbjct: 199 AAFSLKPGTFTTKPVQTQFGYHIIY-VEEKKPAGTIPFDQIKDRIKAQLKMKKFQEIVQK 257

Query: 502 KANQL 506
           +A +L
Sbjct: 258 EAEKL 262


>gi|227484925|ref|ZP_03915241.1| possible peptidylprolyl isomerase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227237080|gb|EEI87095.1| possible peptidylprolyl isomerase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 248

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 5/156 (3%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           +H+  + +  ++D+L+  YE NKE     +  T   ++  +  +A++ ++ +K G  F +
Sbjct: 85  MHKIFEAVNPTDDDLKKYYEDNKELISPNKTYTASHILVDDIDKANKIYEEIKLGLDFKE 144

Query: 299 LAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
            A++  K  S     SLG+F K  +      D + SL + G+ +  +   FGY I  + +
Sbjct: 145 AAKKYSKDPSAASGGSLGTFPKGVMVK-EFQDGLDSL-EIGEISKPVKSQFGYHIIKLED 202

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           I+     +F EVK+ +     + K  EK  E  K +
Sbjct: 203 IQNEEPKAFDEVKEQVYQTYLMVKRQEKYLEKLKEI 238


>gi|311744939|ref|ZP_07718724.1| putative peptidyl-prolyl cis-trans isomerase [Algoriphagus sp. PR1]
 gi|126577446|gb|EAZ81666.1| putative peptidyl-prolyl cis-trans isomerase [Algoriphagus sp. PR1]
          Length = 702

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/374 (14%), Positives = 123/374 (32%), Gaps = 36/374 (9%)

Query: 262 EKYFSPEIRTVEQLVFPNQ-----------KEADEAFQSLKKGKKFIQLAEEQGKS---L 307
           ++Y          ++F  +            +A+E    LK G  F   A + G+     
Sbjct: 340 DQYEGAARMRASHILFSTEGMDDAAKANVRAQAEEVLADLKGGGNFALAASQYGQDGTSQ 399

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           +   LG F K    +   A+++F+   +G    ++   +G+ I  V+ +  +       +
Sbjct: 400 NGGDLGYFKKADFVEP-FAEAVFAAKSEGLINNLVETEYGFHIVEVTGMPLTTYTKLAVL 458

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
           ++++   +       +                   E +  +    ++   V+   +++  
Sbjct: 459 EREL---VASDATRNEAFRMADSFAASSGNRNEFKENASTDGYRVLEASNVNATARNINN 515

Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
            + A      Q++   F +           L D +Y+   +       D +L +V T V+
Sbjct: 516 IQNA-----RQVIRWAFTEASEDEVSPVFEL-DNNYIVASLISKKEEGDVELADVRTQVE 569

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL-GASLLTTNQINRMDN--ENKFF 544
              +  K A         ++ E  K      ++      ASL TT  +    +      F
Sbjct: 570 TQVRNEKKA--------AMIAEQLKGKATLEEMQSVYPDASLNTTPDLKLSASVIPGVGF 621

Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLL 603
               I  +F          PI   +  +V K+ + +  G + +   F   LTQ   +   
Sbjct: 622 APRAIGAIFGLQNSGDLTAPIREDVGVIVGKLNSKNPAGEIGDYTAFQRQLTQGAAQRST 681

Query: 604 DSVIAYLKSQYSVT 617
             ++  L+    V 
Sbjct: 682 YQIMMALQELVGVK 695



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 72/225 (32%), Gaps = 18/225 (8%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
            S  + V  +G +++ +  +    ++      Q+ G            + ++    ++  
Sbjct: 40  NSNQNIVGEIGGEEISYEEYSAKVEEFKMSFQQRTGR--TPSEPEMFSVREQAWQAMIVE 97

Query: 97  ATLDQFIEDIGLEADHGRVWGEIA--------RSPLFHGKDNKFSHDV---FVSRLAREG 145
               +  E +GLE     +   +         R  L + +  +F       F+  L    
Sbjct: 98  NVFQEEYEKLGLEISDAELVDMVQGKNIVAEIRQQLINPQTGQFDKTQLVSFLQSLETAD 157

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN----RSVDYIVLNNRH 201
             ++ +     +M + + +   +   +  S        +F +E       V ++ +    
Sbjct: 158 PTQQAFWAQQEQMFAESRLRIKYDNMLATSEYTTTDEAKFEYEAANTVADVSHLFVPYYV 217

Query: 202 VPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
           +     + S + +  +  ++K  +       I Y+ F +    + 
Sbjct: 218 IADSAVEVSESEMKSYLSEHKSKFETGSSANIEYVSFSIQPSSQD 262


>gi|320354702|ref|YP_004196041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123204|gb|ADW18750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus
           propionicus DSM 2032]
          Length = 327

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/395 (12%), Positives = 124/395 (31%), Gaps = 82/395 (20%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
             ++I   ++ +  +   +S A  +     +V  V    +  S      +     ++++ 
Sbjct: 1   MASRILFFLVSICLVF--VSAASNANVVDRSVAIVNNDTITLSEVNELGRSFFKKVTEET 58

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
                 E  +       ++D L+    L Q  + +G++     V   + R       +NK
Sbjct: 59  PADRLPEALQQA--RNTVIDKLIDKKLLVQEAKKLGIQVSDQEVDNALQRV----LANNK 112

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
            + + F   L   G+ EK+Y +     +  + ++                          
Sbjct: 113 ATMEQFHKELLAMGMTEKQYKEELRDQILSSKLIN------------------------- 147

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP----EYKRISYILFDVHEKEKKIE 247
                     V          + ++++     Y       E                 + 
Sbjct: 148 --------HEVRTKVVIPEEKILEYYQSN---YTRQVGGGELHLQQIGCTWGEPLANGVV 196

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG--- 304
            S D+                           +++  +A++  K G  F +LA++     
Sbjct: 197 PSQDD--------------------------AKEKIRKAYEKAKDGDDFNELAKKYSDLP 230

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS- 363
            +     LG+F    +   ++  ++  L K G+ +PV+    GY    + + +   TVS 
Sbjct: 231 SAEDGGDLGTFQLHELA-PAMQQAVAQL-KSGEISPVVQIDNGYHFFKLVSSQGGATVSK 288

Query: 364 --FQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
             ++ VK++I  ++       + K+  K + +   
Sbjct: 289 ADYEAVKEEIRERLYKQAMEARFKDWVKSIRDKAY 323


>gi|317050625|ref|YP_004111741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum
           indicum S5]
 gi|316945709|gb|ADU65185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum
           indicum S5]
          Length = 280

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 94/263 (35%), Gaps = 26/263 (9%)

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
               L+    +G   G    S+ +L   ++     + ++  + +          SN    
Sbjct: 6   LRLCLAAGLTLGTLAGVALASDTVLATVEKRQITQQDLNRAIQSLPDELRAQVRSNPEFK 65

Query: 215 Q------------WFEKYKDNYRAPE---------YKRISYILFDVHEKEKKIEISNDEL 253
                        + E  + N++  E          + +    F      + + +S  +L
Sbjct: 66  AQLLDELVRQEMVYHEAQRQNFQENEVVRNRLKLLERELMINAFLEEYLSRNVSVSEQDL 125

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS-- 311
           +  YE+NK ++ +        ++  ++++A E  +  + G+ F QLA E           
Sbjct: 126 KEFYERNKARFVTQATVAASHILLEDEQKAREVLRRARAGENFGQLAREHSLDPGSARQE 185

Query: 312 --LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             +G F +         D+ F+ A+ G    ++   FGY I  V    PS TVS  E + 
Sbjct: 186 GFIGEFYRGQGLVKEFEDAAFA-AEVGVHPELVRTEFGYHIIKVHEKNPSRTVSLDEARD 244

Query: 370 DIANQMRITKASEKVKEDYKRLE 392
            +   +   K ++ +    + LE
Sbjct: 245 RVTEIIAEEKQNQALMRLIQELE 267


>gi|295401098|ref|ZP_06811072.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112126|ref|YP_003990442.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           Y4.1MC1]
 gi|294976891|gb|EFG52495.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217227|gb|ADP75831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           Y4.1MC1]
          Length = 278

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 78/194 (40%), Gaps = 26/194 (13%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY---------RAPEYK---RISYILFDVHEKEKKIEIS 249
           +      ++  + +  E  KD Y         +  E      +   L       + I+++
Sbjct: 62  LSKKYKVTDKEIDKEIENLKDMYGVQYDLVVQQNGEKAIRDMVKLDLLRQKAAMEDIKVT 121

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS- 308
           + EL+  YE  K K           ++  ++K A E    L KG+ F +LA++  +    
Sbjct: 122 DKELKDYYENYKPKI------RASHILVKDEKTAKEIKAKLDKGEDFAKLAKQYSQDPGS 175

Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 LG F +  +      D+ + L K G+ +  +   +GY I  V++ +      F 
Sbjct: 176 ASNGGDLGWFGQGKMVK-EFEDAAYKL-KVGEISDPVKTEYGYHIIKVTDKEEK--KPFN 231

Query: 366 EVKKDIANQMRITK 379
           E+K++I  +++ +K
Sbjct: 232 EMKEEIEFEVKRSK 245


>gi|225181417|ref|ZP_03734860.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167815|gb|EEG76623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 319

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 119/369 (32%), Gaps = 92/369 (24%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
              S ++TV +V  +++  +    ++   L +   ++  ++ SE  R + ++ +IL  +V
Sbjct: 27  GGNSAANTVANVNGEEITRAELD-AYMNVLALFMPELQQMLESEELRGM-IEGEILSVMV 84

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
               ++Q  +D+GL      +  E      F       S + F   L    INE++    
Sbjct: 85  QNVVVEQAAKDLGLSVSDEELQAE---YEEFRAMMGGMSDEDFQEVLKEYDINEEDLKQS 141

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
               +    +   F                                      D ++  + 
Sbjct: 142 LRADVYVDKLEQHFAS------------------------------------DITDEDIQ 165

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
            + ++     R P    +                                          
Sbjct: 166 AFIDENPSFGRQPATLEL----------------------------------------SH 185

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADS----- 328
           ++F  ++EA EA + +  G+ F  LA E  +  +  + G    + Y+ D    D+     
Sbjct: 186 ILFDEEEEALEARERILAGEDFGDLAVELSQDPTAQNEGHPGYRGYLGDNIAEDTQDFWS 245

Query: 329 -----IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
                  ++++ G+ +P +    G+ +  +    P   +SF+E ++D    + +   ++ 
Sbjct: 246 DFMEGANNISEDGEVSPPVETQGGWHLIKLHARTPEVELSFEEAREDAFVALSVDLMNQH 305

Query: 384 VKEDYKRLE 392
           +   +   E
Sbjct: 306 LDGVFAAAE 314


>gi|188580734|ref|YP_001924179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           populi BJ001]
 gi|179344232|gb|ACB79644.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           populi BJ001]
          Length = 300

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 79/185 (42%), Gaps = 12/185 (6%)

Query: 226 APE-YKRISYI-----LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +PE  ++++Y      L D  E+E K  ++ +  +A YE+  +     E      ++  +
Sbjct: 108 SPEFKRKLAYFRDKLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVHARHILVES 167

Query: 280 QKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
           + EA +    +K G+ F ++A    ++ G       LG F++E +     AD+ F +   
Sbjct: 168 EDEAKKIAARIKGGEDFAKIAAEVSKDPGSKTEGGDLGWFTQERMVKP-FADAAFKMT-P 225

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G  +  +   FG+ +  V   +     +F E+K+ I   +      + + +  +  +   
Sbjct: 226 GQVSDPVKTQFGWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVER 285

Query: 396 ALGTS 400
           +  ++
Sbjct: 286 SGSST 290



 Score = 40.7 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 16/158 (10%)

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA--------NQLVLEYSKEGKNFRDI 520
           K   P   + L E      +  K++K  EEV ++          + +    K G++F  I
Sbjct: 134 KAVTPEAAKALYE------QTVKSMKPEEEVHARHILVESEDEAKKIAARIKGGEDFAKI 187

Query: 521 GKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
              +     +  +   +     +          F      V   P++    + V +V   
Sbjct: 188 AAEVSKDPGSKTEGGDLGWFTQERMVKPFADAAFKMTPGQV-SDPVKTQFGWHVLRVEEK 246

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +  PV   D+    + Q + +      I  L+    V 
Sbjct: 247 RTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284


>gi|251778113|ref|ZP_04821033.1| foldase protein PrsA [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082428|gb|EES48318.1| foldase protein PrsA [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 247

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 73/165 (44%), Gaps = 5/165 (3%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           +     +++    + +++++++  Y+ N   + +P   + + ++   ++EA    + ++ 
Sbjct: 79  ALTQLAINKVLADVTVTDEDVKKYYDDNASMFVNPPTVSAKHILVKTEEEATSIKEEIEN 138

Query: 293 GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           G  F + A++     S     SLG+F K  +         F  ++ G  +  +   FGY 
Sbjct: 139 GLAFEEAAKKYSTCPSKEQGGSLGNFGKGAMV-PEFEKVAFE-SEVGIVSEPVKTQFGYH 196

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +  V +   S TV F++VK  +  Q+   +   K  E  K+L + 
Sbjct: 197 LILVEDKAESTTVPFEQVKDAVLRQLINERQQNKYLEMIKQLSDK 241


>gi|225012326|ref|ZP_03702762.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium MS024-2A]
 gi|225003303|gb|EEG41277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium MS024-2A]
          Length = 704

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 97/737 (13%), Positives = 220/737 (29%), Gaps = 154/737 (20%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL-SDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           L  IR+  R+    + + +    F+I G+      S   +  V  +   +V    F    
Sbjct: 4   LGKIRQ--RSIFLILVIGMALFAFVISGVFGSNSASTGPTDPVAVINDDEVDIDFFRQ-- 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                 + ++     N    +SV L   + +  +     DQ  E++G++A   ++   I+
Sbjct: 60  ------MVEQTERTYNYSTLQSVNL---VWNQALRNTIFDQQFEELGIDAGKDQLEQIIS 110

Query: 121 RS------PLFHGKDNKFSHDVFVSRL--------------------------------- 141
                   P F  +   F   VF   +                                 
Sbjct: 111 SDESVISNPSFQNEAGFFDFGVFTDFIAQMKVENPVSYENWKIQEQSIIGVAKQRIYLDL 170

Query: 142 --AREGINEKEYIDHYT---KMLSRTDVVGMF---------VGGMRPSNLLLDQAKRFYF 187
             +  GI E E    Y      ++   V   F         V      N + +    F  
Sbjct: 171 IKSSSGITEAEAKADYHSKNDNINIQYVQIPFDVISDSLVNVSDAEVKNYIKEHEADFKR 230

Query: 188 EN-RSVDYIVLNNR---------------------HVPAIADPSN--------AVLTQWF 217
           E+ R++ Y++ +                           ++  ++          +  + 
Sbjct: 231 ESSRNIQYVLFDEAPTEDDLSSIRLRLDALKEERVAYNDVSKLTDTLEGFRSTKNIADFI 290

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE-------KYFSPEIR 270
           ++Y +      Y+       +  +   K+  S  E+   Y    +               
Sbjct: 291 DEYSEESFDSVYRARGEFNNEYADILFKL--SKGEVFGPYRDRGDFKISRLIDRKVNASL 348

Query: 271 TVEQLVFP-------------NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLS---D 309
               ++                + EA      +     +    F  L  E     +    
Sbjct: 349 RASHILIAFNGATRAPSEVSRTKAEAKSEANRVYKMARRASSDFEALVREYSDGPTKTRG 408

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
             LG F +  +     A  +F+   K       ++   FG+ I  V++           +
Sbjct: 409 GDLGFFREGDM-----AQELFNFTNKNKVGNIGLVETEFGFHIVKVTDKD-----DLALI 458

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
              +A  +   K + +V  +  + E         + I+ + K V   +  +    +++ G
Sbjct: 459 ADVVAAAVPSDKTANEVFRNATQFEMDSNEDGDFNAIAEKSKYVVRPVKQITSLEENLPG 518

Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
                +  +  ++   F +D  +      ++  G Y  VQ+   +      ++EV T V+
Sbjct: 519 -----LFQQRNIVRWTFEEDTKVGDIKRFSIASGGYAVVQLTAKVKEGLADIDEVGTQVR 573

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
           K     K AE        L+ +  K+      + +N    + T + IN+ +      G +
Sbjct: 574 KILTNKKKAE--------LIKKQFKDKTTLDALAENEEFEIETASAINQRNPSIVGAGNE 625

Query: 548 G--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605
              +   F+     +          Y V  +  +    +++   +   +   ++  + ++
Sbjct: 626 PYIVGVAFAMEEGTLSNLITGEYGVYKVLLMKKNTAEELEDYTAYTEQMMTELSARITEN 685

Query: 606 VIAYLKSQYSVTVHDNL 622
           V   L+S  S+  +  L
Sbjct: 686 VFKALESVASIDDNRAL 702


>gi|182419506|ref|ZP_02950757.1| foldase protein PrsA [Clostridium butyricum 5521]
 gi|237666290|ref|ZP_04526277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376636|gb|EDT74209.1| foldase protein PrsA [Clostridium butyricum 5521]
 gi|237658380|gb|EEP55933.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 247

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 71/161 (44%), Gaps = 5/161 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
             +++    + +++++ +  Y++NK+ +  P   +   ++   ++EA++  + +  G  F
Sbjct: 83  MAMNKALADVTVTDEDAKKYYDENKDAFSVPPTVSARHILVKTEEEANKVKEEINGGLSF 142

Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
              A +     S     +LG FSK  +       + F  A+ G  T  +   FGY +  V
Sbjct: 143 ADAAMKYSSCPSKEQGGNLGEFSKGMMV-PEFEKASFE-AEIGVLTEPVKTQFGYHLIIV 200

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            +       SF+EVK  + N++      +K  +   +L+E 
Sbjct: 201 DSKNEGAVKSFEEVKDSVVNELLKRNQHKKYDDLMNQLQEK 241


>gi|188589997|ref|YP_001922502.1| foldase protein PrsA [Clostridium botulinum E3 str. Alaska E43]
 gi|188500278|gb|ACD53414.1| foldase protein PrsA [Clostridium botulinum E3 str. Alaska E43]
          Length = 247

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 72/165 (43%), Gaps = 5/165 (3%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           +     +++    + +++++++  Y+ N   + +P   + + ++   ++EA    + +  
Sbjct: 79  ALTQLAINKVLADVTVTDEDVKKYYDDNANMFINPPTVSAKHILVKTEEEATSIKEEIAN 138

Query: 293 GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           G  F + A++     S     SLG+F K  +         F  ++ G  +  +   FGY 
Sbjct: 139 GLAFEEAAKKYSTCPSKEQGGSLGNFGKGAMV-PEFEKVAFE-SEVGIVSEPVKTQFGYH 196

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +  V +   S TV F++VK  +  Q+   +   K  E  K+L + 
Sbjct: 197 LILVEDKAESTTVPFEQVKDAVLRQLINERQQNKYLEMIKQLSDK 241


>gi|291166314|gb|EFE28360.1| peptidylprolyl isomerase Pr [Filifactor alocis ATCC 35896]
          Length = 365

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/375 (16%), Positives = 126/375 (33%), Gaps = 82/375 (21%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K+   V+    L  G S       G   V SV  QK+    +  +          + G  
Sbjct: 6   KVIASVVSATLLFAGCS------IGGDAVASVNGQKIGKDVYEKTLGLYSPSYEMQFGPD 59

Query: 75  VNSERARS-----VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
           + +    S         ++IL+ +++   + Q      L      +  +          D
Sbjct: 60  IWNTEIESGVTFSQKFQEEILEKMINDEIILQDAAKKELTVSVEEINTQFDELK--KSID 117

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
              S + F S L   GI+++   +   K ++        +                    
Sbjct: 118 ---SQEQFKSILESNGIDDEFLKEQVKKDMTVKKYYDTLMQ------------------- 155

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
                            +     + ++++++ D + +    + S+ILF   + +K  E+S
Sbjct: 156 ---------------ENEVKEDEVRKYYDEHIDEFTSS-QVKASHILFAKKDFDKNEELS 199

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS- 308
            +E+                          ++ A++     K G+ F  LA +       
Sbjct: 200 KEEV-----------------------AKKKELAEKVLGMAKNGQNFADLAMKYSDDTGS 236

Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSF 364
                 LG F K  +     +D+ FS+ K+GD +  ++   FG+ I  + + K +    F
Sbjct: 237 AKNGGDLGYFDKNTMVK-EFSDAAFSM-KQGDISDSIVETEFGFHIIKLFDKKENVEK-F 293

Query: 365 QEVKKDIANQMRITK 379
           ++VK+ IA+ ++  K
Sbjct: 294 EDVKQSIASNLQYQK 308



 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 99/266 (37%), Gaps = 21/266 (7%)

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA-------GKDVKGKEVAAI 433
           S+K +E+   LE+ +     + + +++E  VS++     F         ++     + + 
Sbjct: 72  SQKFQEEI--LEKMINDEIILQDAAKKELTVSVEEINTQFDELKKSIDSQEQFKSILESN 129

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL--EEVLTD----VK 487
              ++ L     KD  + K +   + +      ++++       +    +V        K
Sbjct: 130 GIDDEFLKEQVKKDMTVKKYYDTLMQENEVKEDEVRKYYDEHIDEFTSSQVKASHILFAK 189

Query: 488 KDW-KTVKTAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRMDN-ENK 542
           KD+ K  + ++E  +K  +L  +     K G+NF D+         +      +   +  
Sbjct: 190 KDFDKNEELSKEEVAKKKELAEKVLGMAKNGQNFADLAMKYSDDTGSAKNGGDLGYFDKN 249

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
               +     FS     +    +E    + + K+ + K   V++ +     +   +    
Sbjct: 250 TMVKEFSDAAFSMKQGDISDSIVETEFGFHIIKLFDKK-ENVEKFEDVKQSIASNLQYQK 308

Query: 603 LDSVIAYLKSQYSVTVHDNLIQRYLD 628
            +SVI  LK    V  ++++I++  +
Sbjct: 309 YESVIDGLKKAAKVKKNEDVIKKVRE 334


>gi|28209963|ref|NP_780907.1| peptidylprolyl isomerase [Clostridium tetani E88]
 gi|46396876|sp|Q899I2|PRSA_CLOTE RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|28202398|gb|AAO34844.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium tetani
           E88]
          Length = 339

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/399 (12%), Positives = 127/399 (31%), Gaps = 87/399 (21%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN--S 59
           ++ ++  ++ + A +F ++  +      + +        S V  VG++ +          
Sbjct: 1   MKHLKNNTKKFTALLFALLFSMSIAGCNMIEKTPEAIEKSPVAKVGKKTITRGELDTYPI 60

Query: 60  WKQELGMISQKIGFVV--NSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             ++L  + ++ G  +  N+E    +     ++L+ ++    + +  E++    D+ +V 
Sbjct: 61  LAEQLTKLKEQFGGDLSKNAEIKDQLIQFKSQVLEQMIQEEIVFEKSEELK--VDNAKVE 118

Query: 117 GEI-ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
            E+      F  +  + + D +   L + G  E+     +   +   +V    V      
Sbjct: 119 KEVEKNLKNFMDQGFQGNKDKYKEDLKKMGTTEESIKRFFKAQVITEEVSKQVV------ 172

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
                                             +    + +E+ K  +           
Sbjct: 173 ----------------------------KDVKVDDNTAKKHYEESKYTFTV--------- 195

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                                   NK  + +      + ++   ++EA +    L KG+ 
Sbjct: 196 ------------------------NKPTFHA------QHVLVKTEEEAKKVKARLDKGED 225

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
             ++A+E     S       LG      +     AD+I  L  KG+ +  +   FGY + 
Sbjct: 226 IKKIAKELSIDPSAKENSGDLGKAPYSSMVKP-FADAIVKL-NKGEISQPVKSQFGYHVI 283

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            + +        F  VK+ I   +  T+  +   E  ++
Sbjct: 284 KLIDKDEVTFKDFNSVKEQIKKDLLETEKRKVFNEKIEQ 322


>gi|163867494|ref|YP_001608693.1| peptidyl-prolyl cis-trans isomerase [Bartonella tribocorum CIP
           105476]
 gi|161017140|emb|CAK00698.1| peptidyl-prolyl cis-trans isomerase [Bartonella tribocorum CIP
           105476]
          Length = 317

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 83/216 (38%), Gaps = 12/216 (5%)

Query: 182 AKRFYFENRSVDYIV--LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
             RF  E R +  +   L+ + +   A   +   T+ + K      A     +   L+  
Sbjct: 76  LARFPDEQRRIMVLKAYLDMQALAKAARSKDLDKTEAYNKR----MAVMRDNVLQQLYFK 131

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                K  IS+ +L+  Y++        +      ++   +KEA+   + L KG+ F ++
Sbjct: 132 QAIVDK--ISDTDLEDLYKQEIAALPKEDEVKARHILVKTRKEAEAIIKHLNKGENFEEI 189

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++     S      LG FS   +      D+ F L         +   FG+ I  + + 
Sbjct: 190 AKKSSTDGSAAVGGDLGYFSHGQMVKP-FEDAAFGLKVGEYTKQPVESPFGWHIIKLEDR 248

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +     +F EVK+ +  Q+   +  E + +   +++
Sbjct: 249 RVKQPPTFDEVKEMLRTQLIKKRYQELIVDLRSKID 284



 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 6/140 (4%)

Query: 483 LTDVKKDWKTVKTAEE-----VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             ++    K  +            +A  ++   +K G+NF +I K            +  
Sbjct: 148 KQEIAALPKEDEVKARHILVKTRKEAEAIIKHLNK-GENFEEIAKKSSTDGSAAVGGDLG 206

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
              +           F   V      P+E+   + + K+ + +V      D+    L   
Sbjct: 207 YFSHGQMVKPFEDAAFGLKVGEYTKQPVESPFGWHIIKLEDRRVKQPPTFDEVKEMLRTQ 266

Query: 598 MNKDLLDSVIAYLKSQYSVT 617
           + K     +I  L+S+  V 
Sbjct: 267 LIKKRYQELIVDLRSKIDVK 286


>gi|332981378|ref|YP_004462819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mahella
           australiensis 50-1 BON]
 gi|332699056|gb|AEE95997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mahella
           australiensis 50-1 BON]
          Length = 350

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/406 (13%), Positives = 128/406 (31%), Gaps = 97/406 (23%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS--TVVSVGRQKVPFSSFINSWKQELGMI 67
           + +V    L ++ + F+  G S             V  V   K+  + ++  +   +  +
Sbjct: 2   KRFVRMTALAMVAI-FIFAGCSLVTVDPEKEKQLPVAEVNGDKILKADYVKQYDAYINAV 60

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
            Q+ G                     +   TL+   +                       
Sbjct: 61  EQQYG---------------------IDKKTLETSTD----------------------- 76

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
                    +   LA+         D    ++++  V                +  +   
Sbjct: 77  ---------YADTLAQMR------EDIVEGLITQKLVDQQAKKNNIALTDDDKKQVKDQL 121

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
           +     Y       +      + A L Q  +      +               +    I 
Sbjct: 122 QQLKDAYGEEAFADMLKQQQMTEAELEQLLQGDAVQQKL------------FDQLTAGIT 169

Query: 248 ISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQK-------------------EADEAF 287
           ++++E++  Y++NK+ ++  PE+  V  ++    +                   EA++  
Sbjct: 170 VTDEEVKKYYDENKDTEFTDPEMVKVSHILISIPEDKYSADETTKKTEYDKIKPEAEQVL 229

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
              K G  F +L ++          G   +FS+E   + +  ++ F+L  KGD + ++  
Sbjct: 230 AKAKAGDDFAELVKQYSDDAGTKDQGGTLTFSREDQIEPAFIEASFALKNKGDISGLVQT 289

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           S+GY I  +    PS   +F+E K++I + +   K ++K+    + 
Sbjct: 290 SYGYHIIRLEEKIPSKVHTFEEKKQEIHDTLLQQKKNDKITALIEE 335


>gi|303241900|ref|ZP_07328394.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
 gi|302590574|gb|EFL60328.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
          Length = 495

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 69/181 (38%), Gaps = 21/181 (11%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK----------------EAD 284
           +    +  S + ++  YE NK  Y  PE    + ++F  ++                +A+
Sbjct: 317 DLVTNVNASEETIKKYYEDNKSMYIQPEQVRAKHILFSTKEITGEDYDAQKKAEIKKKAE 376

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           E    +K G  F +L  +  +     +     +FSK  +      +  FS+ K G+ + +
Sbjct: 377 EVLAQIKAGADFDELMNKYTEDPGTANYPNGYTFSKGEMV-QEFEEKSFSM-KVGEISDL 434

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +   FGY I  +    P   +   +VK  I  ++   +      +   + +   A+  ++
Sbjct: 435 VETQFGYHIIKLEEKIPETQLKLDDVKDSIKAELDPQEKQNYFDKLLVQFKAESAIVNTL 494

Query: 402 D 402
           +
Sbjct: 495 E 495


>gi|154502709|ref|ZP_02039769.1| hypothetical protein RUMGNA_00522 [Ruminococcus gnavus ATCC 29149]
 gi|153796592|gb|EDN79012.1| hypothetical protein RUMGNA_00522 [Ruminococcus gnavus ATCC 29149]
          Length = 246

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 6/162 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
             + E  K   ++ ++++  YE++K+++   E    + ++  ++++ D    +++ G+  
Sbjct: 83  MTMREVMKDAVVTEEDVKNYYEEHKQQFTKGETVRAKHILTDSKEKCDAILAAIQSGETS 142

Query: 296 FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F   A+E+    S      LG F K  +      D+ F+ A+ G     +   FGY +  
Sbjct: 143 FEDAAKEKSTCPSGAKGGDLGEFGKGQMVK-EFEDAAFT-AEIGAIVGPVQTQFGYHLIK 200

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           V   K +    F+EVK  I NQ+   + ++   +  K L E 
Sbjct: 201 VEEKKDAAVADFEEVKNSIRNQLLQQRQNKVYSDKVKELREK 242


>gi|300024688|ref|YP_003757299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526509|gb|ADJ24978.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 311

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 6/145 (4%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            +S+ + +  Y+   +     E  +   ++   +++A E    L KG  F QLA+E  K 
Sbjct: 117 SVSDADARKIYDDQVKLLKPEEEVSARHILVETEEQAKELKAKLDKGADFAQLAKENSKD 176

Query: 307 LS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                   +LG F    +      + +F L KKG+ +  +   FG+ +  + + +     
Sbjct: 177 PGSKDDGGNLGYFGHGQMV-PQFEEVVFKL-KKGEVSAPVKTQFGWHLVKLEDSRTKQPP 234

Query: 363 SFQEVKKDIANQMRITKASEKVKED 387
           +F+ VK  IA  + + KA +   E 
Sbjct: 235 AFEIVKDRIAQSLLLQKAQKTATEL 259


>gi|260061697|ref|YP_003194777.1| peptidylprolyl cis-trans isomerase [Robiginitalea biformata
           HTCC2501]
 gi|88785829|gb|EAR16998.1| peptidylprolyl cis-trans isomerase [Robiginitalea biformata
           HTCC2501]
          Length = 706

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 95/632 (15%), Positives = 205/632 (32%), Gaps = 68/632 (10%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           LE IRK  RT V  + + +    F++  +       S    S V  V  + +    F   
Sbjct: 4   LENIRK--RTTVLILIIGMALFAFVVSDVLTRGGFGSDKIGSAVGEVNGEPISIDDF--- 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
                  +    G      +A S  +   I D  V  A L Q  E +G++    ++   I
Sbjct: 59  ----RARMEAAEGSF--GPQATSTQIVNSIWDQTVRTAILGQEFEKLGIDIQQDQIMDLI 112

Query: 120 A------RSPLFHGKDNKFSHDVFVSRLAREGIN-EKEY------IDHYTKMLSRTDVVG 166
                  ++P F   +  F  D F + +    +N  ++Y       D   +         
Sbjct: 113 RNNPNFTQNPQFQDANGNFDEDAFRNFITELRVNQPQQYQMWLQTEDALIQAAKEQTYFD 172

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYR 225
           +   G+  +    +   R   +   + Y+ +    +P      S   +  + ++    ++
Sbjct: 173 LIRAGVGATLKEGELDYRLANDKVDIRYVRVPYTSIPDSTISVSKEEIAAYIKENPSEFK 232

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
               + + Y+ F+            + L+A  E  +E+Y      TV    F N  +   
Sbjct: 233 QEAARDLRYVYFEEKASAADETAIEESLRALLED-EEEYREDLDSTVVNPGFLNTDDMLA 291

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
                    K+  +                +K  +P    AD++ +L + G+        
Sbjct: 292 FLDR-NSDTKYDTI--------------YRAKSELP-TQWADTLMAL-ETGETFGPYRDG 334

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
             + ++ + + K +       VK   ++ +     +E+      R +E            
Sbjct: 335 NAFKVSRMMDRKENG-----SVKA--SHILISYAGAERANPSVTRTQEEARERAEELLAE 387

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHTVALPDG--S 462
            R         L               + Y ++ ++   F      +   TV L +    
Sbjct: 388 ARRSGAQF-AQLARDNSDGPSAPNGGDLGYFQEGVMTDAFNDFAFGNAVGTVGLVETEFG 446

Query: 463 YMWVQIKESIPARDRKLEEVL-TDVKKDWK-TVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
           Y  V++ +         + V    + +  + + +T   + ++A  L +  S   + FR I
Sbjct: 447 YHVVKVDDKR-------DVVRLATLTRAIEPSEETINSLFTEATSLEMAVSDSPETFRSI 499

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
            +  G  +   N++  MD      G     +   F+   E+      +    Y + ++T 
Sbjct: 500 AEEKGYQVRPVNKVRTMDENLPGLGAQRRIVQWAFNSDTEIGDIRRFDVAGGYAIVQLTG 559

Query: 579 S-KVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
           + K G +  +D  +  L ++  K     ++A 
Sbjct: 560 TYKEGTMSVEDASVQVLPKLRKKAKAQQILAA 591



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 113/337 (33%), Gaps = 29/337 (8%)

Query: 292 KGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            G +F QLA +      + +   LG F +  + D +  D  F     G    ++   FGY
Sbjct: 391 SGAQFAQLARDNSDGPSAPNGGDLGYFQEGVMTD-AFNDFAFG-NAVGTV-GLVETEFGY 447

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRR 407
            +  V + +    V    + + I       +    +  +   LE  ++    +   I+  
Sbjct: 448 HVVKVDDKRD--VVRLATLTRAIEP---SEETINSLFTEATSLEMAVSDSPETFRSIAEE 502

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
           +      +  V         + +  +  + +++   F  D  +       +  G Y  VQ
Sbjct: 503 KGYQVRPVNKVR-----TMDENLPGLGAQRRIVQWAFNSDTEIGDIRRFDVA-GGYAIVQ 556

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
           +  +       +E+    V    +         +KA Q++   + +GK+  +I  +   +
Sbjct: 557 LTGTYKEGTMSVEDASVQVLPKLRK-------KAKAQQILA--ANQGKSIEEIASSNAVA 607

Query: 528 LLTTNQINRMDNENKFFGYDG-ISQVFSGPVEMVKCFPIENGLSYVVFKVT-NSKVGPVQ 585
           + T   +N         G +  +  + +   +      IE        +VT  ++   + 
Sbjct: 608 ISTATALNVKSPTIPGAGREPLVVGIATVMDQGATSDLIEGETGVFKLEVTGKTEAPELD 667

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
               + + L   +   +   V   L+ +  +  + ++
Sbjct: 668 NYAPYANTLRSSLGPRVAAEVYQALRDKAEIEDNRSI 704


>gi|218661050|ref|ZP_03516980.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli IE4771]
          Length = 293

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 85/226 (37%), Gaps = 17/226 (7%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            + ++++             L D  K+    + ++D  +L    +    D ++       
Sbjct: 36  EIHQSELDLAVANLDPQLAQLPDDQKKVAALSAAIDVKLLAADAITEKLDQTDE------ 89

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
                 ++          L + + K+  ++ +S DE++A Y+K        E      ++
Sbjct: 90  ------FKKRMQYLSDRELHNAYFKKHVVDTVSPDEIKARYDKEVAALPKQEEVHARHIL 143

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333
              + EA E  + L  GK F +LA+E+    +      LG FS+  +      D+ F+L 
Sbjct: 144 VKTEDEAKEIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVK-EFEDAAFALE 202

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           K       +   FGY +  V + + +    F +V+  +   +   K
Sbjct: 203 KGTYSKTPVKTDFGYHVIKVEDKRDAPPPPFDQVQDQVRQLVMRDK 248


>gi|310828352|ref|YP_003960709.1| foldase protein PrsA [Eubacterium limosum KIST612]
 gi|308740086|gb|ADO37746.1| foldase protein PrsA [Eubacterium limosum KIST612]
          Length = 253

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 76/158 (48%), Gaps = 7/158 (4%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQ 298
            +  K +E+S++E++  Y++N +++ +P+      ++ P++++A +  + +K  GK F +
Sbjct: 86  AKFMKNVEVSDEEVKKFYDENPKQFIAPDSIRASHILLPSEQQAIDIIKEIKDGGKTFEE 145

Query: 299 LAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVS 354
            A+      S      L  FSK  +      ++ F++ K G+ +   +   FG+ I  V+
Sbjct: 146 AAKAYSVCPSREQGGDLSYFSKGKMV-PQFENAAFAM-KVGEMSDEPVKTDFGWHIIKVT 203

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + K S T+ +  VK+     +   K +    +    L+
Sbjct: 204 DSKTSETIPYDVVKESARQYLLEQKQNRAFLDRVDELK 241



 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 4/123 (3%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
             +A  ++ E    GK F +  K            +              +  F+  V  
Sbjct: 126 EQQAIDIIKEIKDGGKTFEEAAKAYSVCPSREQGGDLSYFSKGKMVPQFENAAFAMKVGE 185

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
           +   P++    + + KVT+SK          K+    YL +          +  LK +Y 
Sbjct: 186 MSDEPVKTDFGWHIIKVTDSKTSETIPYDVVKESARQYLLEQKQNRAFLDRVDELKKEYD 245

Query: 616 VTV 618
           V V
Sbjct: 246 VDV 248


>gi|209551115|ref|YP_002283032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209536871|gb|ACI56806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 293

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 17/234 (7%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            + ++++             L D  K+    + ++D  +L         D ++       
Sbjct: 36  EIHQSELDLAVANLDPQLAQLPDDQKKVAALSAAIDVKLLAADAAAEKLDQTDE------ 89

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
                 ++          L + + K+  ++ ++ +E++A Y+K        E      ++
Sbjct: 90  ------FKKRMQYLTDRELHNAYFKKHVVDIVTPEEVKARYDKEVAALPKQEEVHARHIL 143

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333
              + EA +  + L  GK F +LA+E+    +      LG FS+  +      D+ F+L 
Sbjct: 144 VKTEDEAKDIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVK-EFEDAAFALE 202

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           K       +   FGY +  V + + +    F++V+  +   +   K  E + + 
Sbjct: 203 KGTYSKTPVKTDFGYHVIKVEDKRDAPPPPFEQVQDQVRQLVMRDKYLELLNKA 256



 Score = 37.7 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 65/182 (35%), Gaps = 21/182 (11%)

Query: 365 QEVKKDIANQMRITKASEKV---------KEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           +EVK     ++      E+V         +++ K + + L  G    E+++  K    + 
Sbjct: 118 EEVKARYDKEVAALPKQEEVHARHILVKTEDEAKDIIKQLDAGKDFAELAKE-KSTDPNK 176

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
                 G   +G+ V      ++     F  +        V   D  Y  +++++   A 
Sbjct: 177 SEGGDLGYFSRGRMV------KEFEDAAFALEKGTYSKTPVKT-DFGYHVIKVEDKRDAP 229

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEV-SSKAN---QLVLEYSKEGKNFRDIGKNLGASLLTT 531
               E+V   V++     K  E +  +KA+   ++  E  ++G +  +     G+  +  
Sbjct: 230 PPPFEQVQDQVRQLVMRDKYLELLNKAKASAKIEISDETLRKGYDQANKQPEPGSEPVAP 289

Query: 532 NQ 533
             
Sbjct: 290 AP 291


>gi|110801593|ref|YP_697584.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Clostridium perfringens SM101]
 gi|110682094|gb|ABG85464.1| PPIC-type PPIASE domain protein [Clostridium perfringens SM101]
          Length = 248

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 76/162 (46%), Gaps = 6/162 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
             + +    + +++DE +  YE++KE +   E  T + ++  ++++A +  + +  G   
Sbjct: 83  MVMKKTLSSVTVTDDEAKDFYEEHKENFVELETVTAKHILVASEEDAKKVEEEIASGSIT 142

Query: 296 FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F   A +     S     +LGSFSK  +      ++ F+L + G  +  +   FGY +  
Sbjct: 143 FEDAANKYSSCPSKEQGGNLGSFSKGMMV-PEFEEAAFNL-ELGVVSAPVKTQFGYHLIK 200

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           V +   + T +F++VK+ + N +   +  +K  E  K L E 
Sbjct: 201 VEDKTEAKTKAFEDVKEQVVNMLIQERQQKKYLELIKELREK 242



 Score = 37.7 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 56/158 (35%), Gaps = 13/158 (8%)

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKV---KEDYKRLEEFLALGT-SMDEISRREKIV 411
           +       F E  K+   ++    A   +   +ED K++EE +A G+ + ++ + +    
Sbjct: 94  VTDDEAKDFYEEHKENFVELETVTAKHILVASEEDAKKVEEEIASGSITFEDAANKYS-- 151

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
               P  +  G      +   +P  E+  F +      L            Y  +++++ 
Sbjct: 152 --SCPSKEQGGNLGSFSKGMMVPEFEEAAFNL-----ELGVVSAPVKTQFGYHLIKVEDK 204

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
             A+ +  E+V   V       +  ++      +L  +
Sbjct: 205 TEAKTKAFEDVKEQVVNMLIQERQQKKYLELIKELREK 242


>gi|49475012|ref|YP_033053.1| peptidyl-prolyl cis-trans isomerase [Bartonella henselae str.
           Houston-1]
 gi|49237817|emb|CAF27012.1| Peptidyl-prolyl cis-trans isomerase [Bartonella henselae str.
           Houston-1]
          Length = 317

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 90/237 (37%), Gaps = 16/237 (6%)

Query: 167 MFVGGMRPSNLLLDQAK--------RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
             + G   +   LD+          RF  E R +  +    +    +   + A + +  +
Sbjct: 53  AVIDGKEVTAGQLDELALEINPGLARFSDEQRRITVL----KAYLDMLALAKAAIKEGID 108

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           K +   +     R + +     ++    +IS+ +L+  Y+K        +      ++  
Sbjct: 109 KSETYNKRMAVMRDNVLQQLYFKQTVVDQISDADLETLYKKEVAALPKEDEVKARHILVK 168

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
            +KEA+   + L KG+ F ++A++     S      LG FS   +      D+ F L   
Sbjct: 169 TKKEAEAIIKRLNKGESFEEIAKKNSTDGSAAVGGDLGYFSHGQMVKP-FEDAAFGLKVG 227

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                 +   FG+ I  + + +      F +VK+ +  Q+   +  + + +  K+++
Sbjct: 228 EYTKKPVESPFGWHIIKIEDRRVKQPPVFDDVKEMLRTQLIKERYQKLIADLRKKID 284



 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 49/154 (31%), Gaps = 6/154 (3%)

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEE----VSSKANQLVLEYSKEGKNFRDIGKN 523
           + +   A    L     +V    K  +         + K  + +++   +G++F +I K 
Sbjct: 135 VDQISDADLETL--YKKEVAALPKEDEVKARHILVKTKKEAEAIIKRLNKGESFEEIAKK 192

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
                      +     +           F   V      P+E+   + + K+ + +V  
Sbjct: 193 NSTDGSAAVGGDLGYFSHGQMVKPFEDAAFGLKVGEYTKKPVESPFGWHIIKIEDRRVKQ 252

Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               D     L   + K+    +IA L+ +  V 
Sbjct: 253 PPVFDDVKEMLRTQLIKERYQKLIADLRKKIDVK 286


>gi|307718834|ref|YP_003874366.1| hypothetical protein STHERM_c11500 [Spirochaeta thermophila DSM
           6192]
 gi|306532559|gb|ADN02093.1| hypothetical protein STHERM_c11500 [Spirochaeta thermophila DSM
           6192]
          Length = 501

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 81/493 (16%), Positives = 152/493 (30%), Gaps = 86/493 (17%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPF------SSFINSWKQELG 65
           W + I   ++ V F+  G+  A                 V        + F    ++   
Sbjct: 21  WGSIIVFAIIVVSFIFVGVPSAGVGSQTKIVYGKYAGMPVEQLPQMPYTYFQREIERLSD 80

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
            I Q+        +  +  + +   +N V      +  +D GL      +   + R    
Sbjct: 81  QIRQQ-NVTAEQSQFLTYQILRTAFNNTVFHLAALKLAQDAGLHVSSKALDRAVMRE--- 136

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
           + +D +FS D +++    E    +++   Y + +    VV   V G   S          
Sbjct: 137 YTEDGEFSEDRYLATPPAERYQIRKF---YRETILSQQVVNDLVFGSVVSEAERSFIAGM 193

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
            +  R + Y+V +    P            + E + D +R  E  RI+            
Sbjct: 194 NYPQRKIRYLVYDFDEYP------ETEAKAYGEAHPDLFRTMELSRIT------------ 235

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-LKKGKKFIQLAEEQG 304
                                         +  +Q EA++ +Q+ LK+ ++F +LA    
Sbjct: 236 ------------------------------ITSSQIEAEKLYQTLLKEPERFEELARASS 265

Query: 305 KSLS---DISLGSFSKEYIPDVSLAD---SIFSLAKKGDFTPVIHGSFG-YVIAHVSNIK 357
           +  +      +G      + D+   D   +IFS+ KKGD   V     G +VI       
Sbjct: 266 RDPNASQGGKMGVVRYADLKDLLSEDDLATIFSM-KKGDILGVFTTLSGAWVIVRCDKEA 324

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
            +  ++ ++    I N +   +    V+E +      L +  S+DE     +        
Sbjct: 325 EAPDLTRKDTLDYIKNYLLSYE-RNIVEEYFSTKASALRVAQSLDEFEAMARDQGKTPGS 383

Query: 418 VDFAGKDV--------------KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
             +   +                G  + A  Y E    RVF        D  V L  G  
Sbjct: 384 TGYFAINYGNLEMFPSPVANTDDGNILQAAAYSETFFERVFSTPVGGVTD-PVNLQGGLL 442

Query: 464 MWVQIKESIPARD 476
           +     E     D
Sbjct: 443 VAFIEAEKTEPED 455


>gi|85713800|ref|ZP_01044790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp.
           Nb-311A]
 gi|85699704|gb|EAQ37571.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp.
           Nb-311A]
          Length = 305

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 5/151 (3%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  I++D ++  Y    ++  S +      ++ P + EA +    LKKG  F +LA+++ 
Sbjct: 127 KAAITDDAMKTVYADASKQITSEQEVHARHILVPTEDEAKKIEGELKKGADFAELAKKES 186

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           K         LG F+KE +     +   F+L + G  +  +   FG+ I  V   +    
Sbjct: 187 KDPGASDGGDLGFFTKEQMV-PEFSKVAFAL-EPGKISDPVKTQFGWHIIKVEEKRARKA 244

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             F +VK  I   +     +E V +  +  +
Sbjct: 245 PDFDQVKPQIEQFVTRKAQAEYVAKLRETAK 275


>gi|254560598|ref|YP_003067693.1| cell-binding factor 2 [Methylobacterium extorquens DM4]
 gi|254267876|emb|CAX23742.1| putative cell-binding factor 2 precursor (Major antigen peb4A),
           cbf2 [Methylobacterium extorquens DM4]
          Length = 300

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 6/176 (3%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           Y R   +L D  E+E K  ++ +  +A YE+  +     E      ++  ++ EA +   
Sbjct: 117 YFRDKLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVESEDEAKKIAA 176

Query: 289 SLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            +K G+ F ++A    ++ G       LG FS+E +     AD+ F +A  G  +  +  
Sbjct: 177 RVKGGEDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVKP-FADAAFKMA-PGQVSDPVKT 234

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
            FG+ +  V   +     +F E+K+ I   +      + + +  +  +   A  T+
Sbjct: 235 QFGWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVERAGSTA 290



 Score = 40.7 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 6/153 (3%)

Query: 469 KESIPARDRKLEE--VLT-DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           K   P   + L E  V +   +++ +      E   +A ++     K G++F  I   + 
Sbjct: 134 KAVTPEAAKALYEQTVKSMKPEEEVRARHILVESEDEAKKIAAR-VKGGEDFAKIAGEVS 192

Query: 526 ASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
               +  +   +     +          F      V   P++    + V +V   +  PV
Sbjct: 193 KDPGSKTEGGDLGWFSQERMVKPFADAAFKMAPGQV-SDPVKTQFGWHVLRVEEKRTKPV 251

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
              D+    + Q + +      I  L+    V 
Sbjct: 252 PTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284


>gi|168188090|ref|ZP_02622725.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum C str.
           Eklund]
 gi|169294073|gb|EDS76206.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum C str.
           Eklund]
          Length = 247

 Score =  113 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 72/165 (43%), Gaps = 5/165 (3%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           +     V++   ++E+++ E++  Y  NK+ +   E+ + + ++   ++ A E  + +K 
Sbjct: 79  ALTQLSVNKVISQVELTDKEVEDYYNANKDNFVVGEMISAKHILVDTEELAKEVTEEIKN 138

Query: 293 GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           G  F   A +     S     +LG F K  +      ++ F+L + G  +  +   FGY 
Sbjct: 139 GMTFSDAATKYSTCPSKAQGGNLGKFGKGQMV-PEFEEAAFNL-EIGKISEPVKTQFGYH 196

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +  V + + +   SF EV+  I   +   +   K     + L++ 
Sbjct: 197 LIEVEDKQEATKKSFDEVRDLIRTNLLQERQKVKYATTVEELKKK 241


>gi|157362935|ref|YP_001469702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga lettingae
           TMO]
 gi|157313539|gb|ABV32638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga lettingae
           TMO]
          Length = 343

 Score =  113 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/389 (13%), Positives = 127/389 (32%), Gaps = 85/389 (21%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQELGMISQKIG 72
           K+F+  L +   +  +     +   ++ V  V    +            + L  I     
Sbjct: 3   KVFMFGLILILSLVAIGQE--TQPATAVVAEVNGVAITMEELNREANVDRLLSQIQSVDA 60

Query: 73  FVVNSERARSVGL------DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
              +     S G+       +++L+NL+    + Q  E +G+      +   ++      
Sbjct: 61  TFYDVLVNTSEGVNLLLRYKREVLNNLIDQVLIKQIGEKMGVTVSKDNIENMVSTE---- 116

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
                         L + G+ E +   +  +             G+   N   D+ +  +
Sbjct: 117 ----------LNKTLTQYGMTESDLDWYLKQ------------AGLGDINSFKDRLRWIF 154

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
              ++V  I    + V + A  +     Q++E+ ++ +   E  ++              
Sbjct: 155 TVQQTVSLI---QQQVTSSATVTEEEARQFYEQNREYFAVEEAAKLL------------- 198

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
                                      ++   ++++AD+A + ++ G++F Q+A +    
Sbjct: 199 ---------------------------RITVDSKEKADKALERIRAGEEFSQVASDVSTD 231

Query: 307 L----SDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                    LG   +   +    + + IF ++ KG     +  S G+ I  + + +P   
Sbjct: 232 PLSKGKAGDLGWVERGSGLISEEIEEKIF-VSPKGAILGPLQTSVGWEIYRIIDKRPKGY 290

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390
            +F++V  DI   +   KA +  +     
Sbjct: 291 ENFEDVVNDIYQHLIQQKAQQLWQTWINE 319


>gi|162451238|ref|YP_001613605.1| foldase protein prsA precursor [Sorangium cellulosum 'So ce 56']
 gi|161161820|emb|CAN93125.1| Foldase protein prsA precursor (EC 5.2.1.8) [Sorangium cellulosum
           'So ce 56']
          Length = 605

 Score =  113 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 61/400 (15%), Positives = 131/400 (32%), Gaps = 58/400 (14%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           G++  V V    +    F N+ K  L M         +  R R++G  +   + L     
Sbjct: 35  GNTCAVEVRGSCISSIDF-NASKNLLAM------RSPDENRLRAMGYRRLTAEGLYERWL 87

Query: 99  LDQFIEDIGLEADHGRVWGEI------ARSPLFH----------------------GKDN 130
           L++  + +G+      +  E+         P                          +  
Sbjct: 88  LNEDAKRLGITVSDDELTSELVAGRVHVSLPADKIRQVGYALSLREDLIRYLDVRNRQTK 147

Query: 131 KFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           KF +  +  ++     ++  ++ ++  K L    +  +    +R       +        
Sbjct: 148 KFDNKQYEKQIRNITKMSPTDFREYQRKELIAARMRELIRARVRVGENEAFEQFSREKST 207

Query: 190 RSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNY-RAPEYKRISYILFDVHEKEKKIE 247
           R++ Y+  + R     I D S   +  W +  K+   +A E ++  Y       +   +E
Sbjct: 208 RTLAYVRFDRRFYSDLIVDTSEKAIQAWADNNKEELDKAWEGRKAQYQPECRVARVLAVE 267

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           +  +E +   E  K                  +   + A Q LKKG+ F  +A       
Sbjct: 268 VRPEEAEQGPEAGKA---------------AAKARIEGAVQRLKKGESFADVARSASDDP 312

Query: 308 S---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           S      LG  +K  +    + D +F + K GD + +I    G+ +  +  I        
Sbjct: 313 SAARGGELGCVAKGRLSKP-VEDKLFEM-KAGDVSDLIETEDGFHVIKLEQIAKDAEAEK 370

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
              ++   +     ++     E  K++    A G S+++ 
Sbjct: 371 IGRQETARDLYIAHESERLAAEAAKQVLAAAAGGKSLEDA 410


>gi|326790776|ref|YP_004308597.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
 gi|326541540|gb|ADZ83399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
          Length = 330

 Score =  113 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 61/392 (15%), Positives = 116/392 (29%), Gaps = 96/392 (24%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSST--------VVSVGRQKVPFSSFINSWKQELGMISQ 69
           +V+L V  L +G+         S T        + +VG  KV   +          ++  
Sbjct: 8   IVLLMVGLLGFGVVGCSKVADNSQTNNKTEDVVIATVGDGKVTKKALDQQLVYLDSLMQW 67

Query: 70  KIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           + G    S        +++   ++D LV    +    ++  +      V  E+      +
Sbjct: 68  QYGEDYESNEEAMNYYNEQKRLMVDYLVEIQLIISKAQEYDVNVTADDVDEELELLKSDY 127

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
             +       F   L   G++ +E      + L    VV                     
Sbjct: 128 DTE-----AAFEEALTTSGMSLEELKQMLKEDLIVNQVVTAST----------------- 165

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
                                 S+  +  +++   D+++      +S+IL          
Sbjct: 166 -----------------KDITVSDEEIKTYYDGNIDSFKTEAGATMSHIL---------- 198

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
                                            ++EA E      KG  F  LAEE G  
Sbjct: 199 ------------------------------VATEEEAKEIKAKYDKGTSFEDLAEEYGTD 228

Query: 307 LSDISLGSFS----KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI-KPSFT 361
            +    G            D     S   L + G+ +  +    G+ +  V+++ K    
Sbjct: 229 ATKSQGGLLEYIPYNSTKYDADFLASAKQLDE-GEVSEPVKTQNGWHLIKVTDVNKEERI 287

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            S+ EVK +I  Q+ I K +E V++  K  +E
Sbjct: 288 KSYDEVKDEIKEQLLIQKQNEVVEKKVKEWKE 319



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 90/265 (33%), Gaps = 31/265 (11%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-----EADEAFQSLK--KGKKFIQLAE 301
           SN+E    Y + K +     +  ++ ++   Q+      AD+  + L+  K     + A 
Sbjct: 75  SNEEAMNYYNEQK-RLMVDYLVEIQLIISKAQEYDVNVTADDVDEELELLKSDYDTEAAF 133

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           E+  + S +SL    +    D+ +   + +  K    +                IK  + 
Sbjct: 134 EEALTTSGMSLEELKQMLKEDLIVNQVVTASTKDITVSD-------------EEIKTYYD 180

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
            +    K +    M     + +  E+ K ++     GTS ++++                
Sbjct: 181 GNIDSFKTEAGATMSHILVATE--EEAKEIKAKYDKGTSFEDLAEEYG-----TDATKSQ 233

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES-IPARDRKLE 480
           G  ++     +  Y    L      D+       V   +G +  +++ +     R +  +
Sbjct: 234 GGLLEYIPYNSTKYDADFLASAKQLDEG-EVSEPVKTQNG-WHLIKVTDVNKEERIKSYD 291

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQ 505
           EV  ++K+     K  E V  K  +
Sbjct: 292 EVKDEIKEQLLIQKQNEVVEKKVKE 316


>gi|329113840|ref|ZP_08242611.1| Cell-binding factor 2 [Acetobacter pomorum DM001]
 gi|326696850|gb|EGE48520.1| Cell-binding factor 2 [Acetobacter pomorum DM001]
          Length = 260

 Score =  113 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 61/156 (39%), Gaps = 6/156 (3%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--- 306
           +D ++  Y++N     + +      ++   + EA++  + LK G  F +LA E       
Sbjct: 90  DDAIKQYYDQNYAGKPAEKEVHARHILVKTEAEANDVIKKLKAGADFGKLAAEVSTDKGS 149

Query: 307 --LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              +   LG F K  +   + +D+ F++ K    +  +   +GY +  V + +     + 
Sbjct: 150 AQQNGGDLGWFKKTDMI-PAFSDAAFAMKKGEISSTPVKSQYGYHVIQVLDTRTDPVPTL 208

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
             V+  I   +      E V +   +++       +
Sbjct: 209 DSVRDKIRQALIQKYVREAVDKATNQVKIVRFDPNT 244


>gi|282877139|ref|ZP_06285980.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
 gi|281300737|gb|EFA93065.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
          Length = 713

 Score =  113 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 91/725 (12%), Positives = 203/725 (28%), Gaps = 133/725 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56
           L  IRK        I + ++ +    +   +   S   S       +  V  +KV    F
Sbjct: 4   LGKIRKR-----GLILISIIGLGLFAFIAEEGFRSCEASRNDRRQQIGEVLGEKVSVQDF 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                +   +I  + G   N    +   +   +    +    ++     +GL      + 
Sbjct: 59  QKLIDEYSEVIKMQQGVN-NLNEMQLNQVKDMVWQTYIQTKVVENEANKLGLTVTDAELQ 117

Query: 117 G--------EIARSPLFHGKDNKFSHDVFVSRLA----REGINEKEYIDH---------- 154
                     + ++P  + +  +F  +     LA    ++  N +    +          
Sbjct: 118 NILNEGTNPMLMQTPFVNQQTGRFDANSLKKFLADYKTQQTANPQLAEQYQALYKYWTFI 177

Query: 155 ---YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY------------IVLNN 199
                + L       +    +  + +    A +   E   ++             + +++
Sbjct: 178 EKTLRQQLLAQKYQSLLASCILSNPVEAKMAYKEANEESQIELATFPYSSIEDSKVKISD 237

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPE------------------------------- 228
             + A  +       Q+ E     Y   +                               
Sbjct: 238 ADLKAKYEEVKGRFKQYVESRDIKYVTVQVAPSANDRAALQKSFTKYTADLAAAADPANA 297

Query: 229 ----YKRISYILFDVHEKEKKIEISND-------ELQAEYEKNKE----------KYFSP 267
                  ++Y+   V +     +I++        +    +E   +          K   P
Sbjct: 298 VRKSTSLVNYLGLPVAKTAYAADIADRLDSMAVGQTFGPFESQMDNTLNVIKLVSKQLLP 357

Query: 268 EIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEY 319
           +     Q+          QK AD  + +L  G  F  LA++ G++   + ++   + +  
Sbjct: 358 DSVQYRQIQVMGATADEAQKRADSIYTALNGGADFELLAKKYGQTGEKTWLTTAQYQQAP 417

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             D      I +L   G  +   +   G   VI  V + +         V   I   +  
Sbjct: 418 SMDADTKTYINTLNNLG-VSETRNMKLGQGNVIIQVVDRRAMINKYTAAV---IKKTIDF 473

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
           +K  E     Y +   F++   + D+I++  K     +              +  I    
Sbjct: 474 SK--ETYSTAYNKFSSFVSANQTPDKIAKNAKGCGYTVQEAKDITTST--HTLVGINDTR 529

Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKT 495
             L  +F   +           +   + V + +  P   R  +  +V   +K +    K 
Sbjct: 530 DALKWLFEAKEGEISPMYECGNNDQLLLVVLDKIHPKGYRAYDDPQVKEMLKAEVMRDKK 589

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN----ENKFFGYDGISQ 551
           AE++ +KA  +               K  GA++   NQ+                     
Sbjct: 590 AEQLMAKAKDVKS---------VSAAKAKGATVAPVNQVTFSAPVFVMSTGASEPALSGA 640

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
           V +         P++      VF+VTN    P + + K      +        + +  L 
Sbjct: 641 VAATAKGQFSAKPVKGNAGVYVFQVTNRTTRPGKFEAKAEEDKARQKALQFAGNFMNELV 700

Query: 612 SQYSV 616
            +  V
Sbjct: 701 IKAGV 705


>gi|253701712|ref|YP_003022901.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
 gi|251776562|gb|ACT19143.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
          Length = 323

 Score =  113 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 113/357 (31%), Gaps = 76/357 (21%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                  V    +       + K  L     ++   +  E  +     +  LD L+S   
Sbjct: 30  SQDVPALVNGAPITRGEVDRAVKALLS--QNRMAQPIAPEVMKKAT--EAALDQLISAEV 85

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L Q   ++G+     +V   +A       +    + D +   L    ++EKE      K 
Sbjct: 86  LYQAASEMGVADLDRQVRDRVA-----QSRSRYRTGDEYEKALDSVEMSEKEVELAVRKD 140

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +   +++                                        A  S A + +++ 
Sbjct: 141 IVINNLIRT---------------------------------QFLPKATVSEAEIEEFYR 167

Query: 219 KYKDN-YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           + ++  +R  E  R+S IL  V                       +  +P  R       
Sbjct: 168 ENREKSFRLGERVRVSQILVPV----------------------PEQATPAARK------ 199

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAK 334
             +++A    Q ++KG+ F  +A  +       +   +G  ++      S   + F L K
Sbjct: 200 QAREKALALLQRVRKGEDFAAVASLESAPPTNKNGGDMGGLNRGEAV-PSFEKAAFGL-K 257

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            G+ + V+    G+ I  +S   P  T +  E +  I   ++ +K  + V E   +L
Sbjct: 258 VGEVSEVVETPVGFHIVKLSQKLPPATATLDEARGQIVRYLQQSKVRKSVAEYAAQL 314



 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 11/136 (8%)

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG-KEVAA 432
           +     A ++ +E    L + +  G     ++  E       P  +  G D+ G     A
Sbjct: 191 EQATPAARKQAREKALALLQRVRKGEDFAAVASLESA-----PPTNKNGGDMGGLNRGEA 245

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
           +P  E+  F +            V  P G +  V++ + +P     L+E    + +  + 
Sbjct: 246 VPSFEKAAFGL----KVGEVSEVVETPVG-FHIVKLSQKLPPATATLDEARGQIVRYLQQ 300

Query: 493 VKTAEEVSSKANQLVL 508
            K  + V+  A QL  
Sbjct: 301 SKVRKSVAEYAAQLRA 316


>gi|326791007|ref|YP_004308828.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
 gi|326541771|gb|ADZ83630.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
          Length = 246

 Score =  113 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +  + +  S++E++  YE ++ ++ S E      ++    +EA++  + +K G  F + A
Sbjct: 86  KLLESVTASDEEVKEYYETHQGQFKSDEAAKANHILVATLEEAEKVAEEIKAGLSFAEAA 145

Query: 301 EEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++      +    +LG F++  +       + F+++  G+ +  +   FGY I  +  + 
Sbjct: 146 KKYSTCPSASQGGALGEFTRGRMV-PEFETAAFAMS-PGEISAPVQTQFGYHIIELEALT 203

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           P+     + VK+ +  Q  + K         + LE  
Sbjct: 204 PAGLSPLEAVKEQVKEQCLLAKRQALYLAKRQELESL 240


>gi|313679732|ref|YP_004057471.1| ppic-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
           profundus DSM 14977]
 gi|313152447|gb|ADR36298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
           profundus DSM 14977]
          Length = 308

 Score =  113 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 93/265 (35%), Gaps = 28/265 (10%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            L     +    GG   S+    Q      +   R V   V+          P  A + +
Sbjct: 41  DLQFDLFLRQSTGGAALSDEARAQLAPLKKQYLQRMVQDAVVVQAAERLGLAPDEATIDR 100

Query: 216 WFEKYKD-------------NYRAPE---YKRISYILFDVHEKEKKIE----ISNDELQA 255
             E+ K               Y  P+   Y+R++Y           I     IS    + 
Sbjct: 101 RVEQAKQRLSGEAAFLAALKQYGIPDVATYRRMTYDAMAYKAMIGWIRQRLRISEAATRM 160

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDIS 311
            Y  ++E Y  PE      ++ P+++EA++    LK G  F +LA    ++ G +     
Sbjct: 161 LYLLDREAYAEPEQICTAHILVPSREEAEDVIARLKGGADFAELAREVSQDPGSAPRGGD 220

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           LG  +           +  +L + G  +  +   FG+ +  +++ +P+  + ++EV+  I
Sbjct: 221 LGCVALGRFV-PEFERAALAL-QPGQVSEPVQTQFGWHVIRMNDRRPARVLPYEEVRGQI 278

Query: 372 ANQMRITKASEKVKEDYKRLEEFLA 396
             ++        VK      +  + 
Sbjct: 279 RAKIEGLAIERFVKNLVAHADAEVY 303


>gi|23009953|ref|ZP_00050812.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 218

 Score =  113 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 68/173 (39%), Gaps = 6/173 (3%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           E K  ++ +  +A Y++  +     E      ++  ++ EA +    +K G+ F ++A E
Sbjct: 42  EAKKAVTPEAAKALYDQTVKSMKPEEEVHARHILVESEDEAKKIAARIKGGEDFAKVAAE 101

Query: 303 QGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
             K          LG F++E +     AD+ F LA  G  +  +   FG+ +  V   + 
Sbjct: 102 LSKDPGSKTEGGDLGWFTQERMVKP-FADAAFKLA-PGQVSDPVKTQFGWHVLRVEEKRT 159

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
               +F E+K+ I   +      + + +  +  +     G++       +   
Sbjct: 160 KPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVERVGGSATPAAGEAKGET 212



 Score = 39.2 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 16/158 (10%)

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA--------NQLVLEYSKEGKNFRDI 520
           K   P   + L +      +  K++K  EEV ++          + +    K G++F  +
Sbjct: 45  KAVTPEAAKALYD------QTVKSMKPEEEVHARHILVESEDEAKKIAARIKGGEDFAKV 98

Query: 521 GKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
              L     +  +   +     +          F      V   P++    + V +V   
Sbjct: 99  AAELSKDPGSKTEGGDLGWFTQERMVKPFADAAFKLAPGQV-SDPVKTQFGWHVLRVEEK 157

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +  PV   D+    + Q + +      I  L+    V 
Sbjct: 158 RTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 195


>gi|86359353|ref|YP_471245.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CFN 42]
 gi|86283455|gb|ABC92518.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CFN 42]
          Length = 293

 Score =  113 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 77/203 (37%), Gaps = 10/203 (4%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  +   + + V  +          A  +   L Q      D ++          L + +
Sbjct: 52  QLAQLPDDQKKVAALSAAIDVKLLAAGATTEKLEQ-----TDEFKKRMQYLTDRELHNAY 106

Query: 241 EKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            K+  ++ ++ DE++A Y+K        E      ++   + EA +  + L  GK F +L
Sbjct: 107 FKKHVVDTVTPDEIKARYDKEVAALPKQEEVHARHILVKTEDEAKDIIKQLDAGKDFAEL 166

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A+E+    +      LG FS+  +      D+ F+L K       +   FGY +  V + 
Sbjct: 167 AKEKSTDPNKSEGGDLGYFSRGRMVK-EFEDAAFALEKGAYSKTPVKTDFGYHVIKVEDK 225

Query: 357 KPSFTVSFQEVKKDIANQMRITK 379
           + +    F +V+  +   +   K
Sbjct: 226 RDAPPPPFDQVQDQVRQLVMRDK 248


>gi|158321661|ref|YP_001514168.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           oremlandii OhILAs]
 gi|158141860|gb|ABW20172.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           oremlandii OhILAs]
          Length = 317

 Score =  113 bits (283), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 77/194 (39%), Gaps = 10/194 (5%)

Query: 205 IADPSNAVLTQWFEKYK--DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
               S+    +  E+ K  D +   + ++            +K EI+    +  YE+N E
Sbjct: 121 KVMESDENYKKLIEENKLDDAFIKEQIRKDLIAYKYNQFYLEKTEINEAAAKTFYEENPE 180

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKE 318
            +   E  + + ++   ++ A E    L+ G  F +LA+E            +LG F K 
Sbjct: 181 GFH-NEQVSAKHILVETEETAKEVIGKLEAGADFAELAKEYSTEPGAEQTGGNLGYFKKG 239

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
            +       + F+L + G  +  +   FGY +  V +       SF++ K DI + ++  
Sbjct: 240 RMV-PEFEKAAFAL-EVGKISEPVKTDFGYHVIVVEDKVDESI-SFEDAKADIVDYLKRL 296

Query: 379 KASEKVKEDYKRLE 392
              + ++E  K+  
Sbjct: 297 DYQKHLEEALKKAN 310


>gi|190893605|ref|YP_001980147.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CIAT 652]
 gi|190698884|gb|ACE92969.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CIAT 652]
 gi|327193395|gb|EGE60295.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CNPAF512]
          Length = 293

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 85/226 (37%), Gaps = 17/226 (7%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            + ++++             L D  K+    + ++D  +L    +    D ++       
Sbjct: 36  EIHQSELDLAVANLDPQLAQLPDDQKKVAALSAAIDVKLLAADAIAEKLDQTDE------ 89

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
                 ++          L + + K+  ++ ++ DE++A Y+K        E      ++
Sbjct: 90  ------FKKRMQYLSDRELHNAYFKKHVVDTVTPDEVKARYDKEVAALPKQEEVHARHIL 143

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333
              + EA E  + L  GK F +LA+E+    +      LG FS+  +      D+ F+L 
Sbjct: 144 VKTEDEAKEIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVK-EFEDAAFALE 202

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           K       +   FGY +  V + + +    F +V+  +   +   K
Sbjct: 203 KGAYSKTPVKTDFGYHVIKVEDKRDAPPPPFDQVQDQVRQLVMRDK 248


>gi|108758581|ref|YP_628738.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622]
 gi|108462461|gb|ABF87646.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622]
          Length = 325

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 104/359 (28%), Gaps = 73/359 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V R  +  S        E+  ++         +R     L K  LD L+    +
Sbjct: 29  DKVAAVVNRDIIALSEVQQRAAPEMARVNDPDPRKRGEQRL---QLMKTALDTLIGEKLM 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +  I  +G+ A    V   +A       ++N      F   L  EG+    Y D   K +
Sbjct: 86  ESEIAQLGITASEAEVDELVADV---RQQNNITDPAQFEQLLLGEGLTMATYRDMMRKRI 142

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  ++ M VG                                      +   L   + +
Sbjct: 143 LRDRLLRMKVG---------------------------------PQVKITEEDLKAAYTQ 169

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           Y             +IL  V  K    ++                               
Sbjct: 170 YTRMESGDSEVHARHILVQVDAKATAEQVE----------------------------AA 201

Query: 280 QKEADEAFQSLKK-GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
           +K A+      ++ G  F  LA  +     +     LG F +  +   +   + F L + 
Sbjct: 202 KKRAEAIATEARRPGMDFASLARARSEGPSAADGGDLGWFKRGVMV-PAFEKAAFGLPEG 260

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           G  +  +  +FG+ +  V   +     S++E++  +  ++   K  + + +  + L + 
Sbjct: 261 G-VSEPVRTNFGWHVLKVEERRTVAAASYEEMRPKLEGKLLQEKTEKFLDQYVQELRQK 318



 Score = 47.3 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 5/131 (3%)

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
           T +  E    +A  +  E  + G +F  + +         +  +    +           
Sbjct: 194 TAEQVEAAKKRAEAIATEARRPGMDFASLARARSEGPSAADGGDLGWFKRGVMVPAFEKA 253

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKV----TNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
            F  P   V   P+     + V KV    T +     + + K    L Q   +  LD  +
Sbjct: 254 AFGLPEGGV-SEPVRTNFGWHVLKVEERRTVAAASYEEMRPKLEGKLLQEKTEKFLDQYV 312

Query: 608 AYLKSQYSVTV 618
             L+ + +V V
Sbjct: 313 QELRQKANVDV 323


>gi|229541454|ref|ZP_04430514.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus coagulans
           36D1]
 gi|229325874|gb|EEN91549.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus coagulans
           36D1]
          Length = 290

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 83/222 (37%), Gaps = 26/222 (11%)

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVL--------TQWFEKYKDNYRAPEYKRIS 233
            ++   E        +    +    + +   L         Q+    + ++R      + 
Sbjct: 54  LQQLTIEKVLSKKYTVKKSEIDKQVNDTKKQLGSSFNTALQQYGYANEKDFRN----SVK 109

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
             L +    E  I  +  +L+  Y  + +            ++  ++ +A++  + L KG
Sbjct: 110 VGLLEQKAAEATIHPTEKQLKNYYNNDIKP-----KIKARHILVSSKSKAEDIKKQLDKG 164

Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
             F  LA++     +       LG F    + D    ++ + L K  + +  +  S+GY 
Sbjct: 165 ADFATLAKKYSTDTATASKGGDLGWFGAGEM-DSDFENAAYKL-KVNEISGPVKTSYGYH 222

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYKR 390
           I  ++  K      + E+KKD+  Q + +K  +EK++   K+
Sbjct: 223 IIQLTGEK--QKKPYSEMKKDVVKQYKESKVTTEKIQSVLKK 262


>gi|255528699|ref|ZP_05395439.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           carboxidivorans P7]
 gi|296188773|ref|ZP_06857156.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Clostridium
           carboxidivorans P7]
 gi|255507609|gb|EET84109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           carboxidivorans P7]
 gi|296046636|gb|EFG86087.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Clostridium
           carboxidivorans P7]
          Length = 248

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 79/181 (43%), Gaps = 7/181 (3%)

Query: 219 KYKDNYRAP-EYKRISYILFDV-HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +   +Y A  E  +   +      +  +++ + + E++  Y  NKE +  PE  + + ++
Sbjct: 63  ENDSDYIAQLEMAKKEILTQTAIAKVMQQVSVEDKEVEDYYNANKENFKEPETVSAKHIL 122

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333
             ++++A E  + +  G  F   A++     S     +LG F +  +      ++ F+L 
Sbjct: 123 VESEEKAKEVAEEINAGTTFEDAAKKYSSCPSKEQGGNLGKFGRGQMV-PEFEEAAFAL- 180

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           + G  +  +   FGY +  V +       SF+EVK  I N++   + S K  +  K L +
Sbjct: 181 EIGTLSAPVKTQFGYHLIKVEDKSKGAVKSFEEVKNSIKNKLLQERQSFKYTQLNKELRQ 240

Query: 394 F 394
            
Sbjct: 241 K 241


>gi|170747170|ref|YP_001753430.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653692|gb|ACB22747.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 311

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 78/194 (40%), Gaps = 12/194 (6%)

Query: 226 APE-YKRISYI-----LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            PE  ++++Y      L D  E+E K  ++ +   A Y++  +     E      ++  N
Sbjct: 119 TPEFKRKLAYFRDKLLLDDYLEQEAKRAVTPEAEHAIYDQTVKLMKPEEEVHARHILVDN 178

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKK 335
           + EA +    +K G+ F ++A E  K          LG F+KE +     A++ F++ K 
Sbjct: 179 EAEAKKIAARIKGGEDFAKVAAEASKDPGSKAEGGDLGWFTKERMV-PDFANAAFAM-KA 236

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G  +  I   FG+ +  V   +     +F E+K+ I   +      + + +     +   
Sbjct: 237 GQVSDPIKTQFGWHVIKVEEKRTKPQPTFDELKEQIDQHLIRKAQQDMILKLRSEAKIER 296

Query: 396 ALGTSMDEISRREK 409
           A      + +   K
Sbjct: 297 ADAPPAAQTAPEPK 310



 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 2/115 (1%)

Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKC 562
            + +    K G++F  +         +  +   +     +    D  +  F+     V  
Sbjct: 182 AKKIAARIKGGEDFAKVAAEASKDPGSKAEGGDLGWFTKERMVPDFANAAFAMKAGQV-S 240

Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            PI+    + V KV   +  P    D+    + Q + +     +I  L+S+  + 
Sbjct: 241 DPIKTQFGWHVIKVEEKRTKPQPTFDELKEQIDQHLIRKAQQDMILKLRSEAKIE 295


>gi|158521718|ref|YP_001529588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus
           oleovorans Hxd3]
 gi|158510544|gb|ABW67511.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus
           oleovorans Hxd3]
          Length = 316

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 121/359 (33%), Gaps = 73/359 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGAT 98
              V  V ++ +  S    +       I  +++      E        ++++D+L+    
Sbjct: 20  DRIVAFVNQEIILLSELEKAMALYETAIRERQLPADTEKEMLYRA--RQEMIDHLIDRRL 77

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  +++G+  D   V   + R      +   F+ +     LA +G   + Y +   + 
Sbjct: 78  IQQRADELGVTVDDREVDDAMERM----KRSMLFTDEDLRQSLAEKGYTLEGYRNELREQ 133

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           + R  V+ +                                  V +    +   +  ++E
Sbjct: 134 ILRQRVLTL---------------------------------EVKSKVVVTPVDIQAYYE 160

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            + + Y A     +  I+  V +                            +T+ +++  
Sbjct: 161 THPEEYSAGRQYHLRNIIMRVDKDMPDES---------------------KKTISEMM-- 197

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKK 335
                 +    L+ G+ F  LA +  +S        LG F+ E +    L ++I  L + 
Sbjct: 198 -----QKIHDRLQAGESFETLASQYSQSSFAEKGGDLGFFALEDLA-PQLREAIEEL-QA 250

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           G+FTPV+    GY I ++  I+    VS ++   +I  ++      E+ ++    L E 
Sbjct: 251 GEFTPVLDTPLGYQILYLEEIQEKPAVSLEKATDEIREKLYEDLLEERFEKWVTELREK 309


>gi|299132839|ref|ZP_07026034.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
 gi|298592976|gb|EFI53176.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
          Length = 298

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 67/155 (43%), Gaps = 5/155 (3%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           ++E K  +++  L+  Y+   ++    +      ++   + EA E    LKKG  F +LA
Sbjct: 120 DQEGKAAVTDAALKKVYDDAAKQISGEQEVHARHILVGTEAEAKEIIAELKKGADFAELA 179

Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +++ K         LG F+K+ +     + + F+L + G  +  +   FG+ +  V + +
Sbjct: 180 KKKSKDPGASDGGDLGYFTKDQMV-PEFSAAAFAL-EPGKISEPVKSQFGWHVIKVEDKR 237

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                 F++VK  +   +     +E V +     +
Sbjct: 238 ARKAPPFEQVKPQLEAFVIRKAQAEYVAKLRSDAK 272



 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 52/149 (34%), Gaps = 8/149 (5%)

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEE------VSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
            D  L++V  D  K     +            ++A +++ E  K+G +F ++ K      
Sbjct: 128 TDAALKKVYDDAAKQISGEQEVHARHILVGTEAEAKEIIAEL-KKGADFAELAKKKSKDP 186

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
             ++  +           +  +  F+     +   P+++   + V KV + +       +
Sbjct: 187 GASDGGDLGYFTKDQMVPEFSAAAFALEPGKI-SEPVKSQFGWHVIKVEDKRARKAPPFE 245

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +    L   + +      +A L+S   + 
Sbjct: 246 QVKPQLEAFVIRKAQAEYVAKLRSDAKIE 274


>gi|192288942|ref|YP_001989547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris TIE-1]
 gi|192282691|gb|ACE99071.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris TIE-1]
          Length = 316

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 82/214 (38%), Gaps = 9/214 (4%)

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
             +    +R  + +              +  +        D  +  ++ R   ++ DV  
Sbjct: 68  LAQLDPASRKENVLAFLIDMKIVAKAAEDKKIQD----NADFKKRLDFARNRLLMDDVLA 123

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
            E K   +++ ++  Y++  ++    +      ++   + EA    + LKKG  F +LA+
Sbjct: 124 AEGKAATTDEAMKKVYDEAAKQISGEQEVHARHILVETEDEAKAVAEELKKGADFAELAK 183

Query: 302 EQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           ++ K         LG F+K+ +     + + F+L + G  +  I   FG+ I  V   + 
Sbjct: 184 KKSKDPGASDGGDLGFFTKDQMV-PEFSAAAFAL-EPGKISDPIKTQFGWHIIKVEEKRN 241

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               SF +VK  I   +     S+ V +  +  +
Sbjct: 242 RKPPSFDQVKAQIEQYVTRKAQSDYVSKLRQAAK 275



 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 83/221 (37%), Gaps = 14/221 (6%)

Query: 399 TSMDEISRREKIVS--IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
             +D  SR+E +++  ID+ +V  A +D K ++ A    +          DD L+ +   
Sbjct: 69  AQLDPASRKENVLAFLIDMKIVAKAAEDKKIQDNADFKKRLDFARNRLLMDDVLAAEGKA 128

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
           A  D +     +K+      +++     +V      V+T +E  + A +L     K+G +
Sbjct: 129 ATTDEA-----MKKVYDEAAKQIS-GEQEVHARHILVETEDEAKAVAEEL-----KKGAD 177

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
           F ++ K        ++  +           +  +  F+     +   PI+    + + KV
Sbjct: 178 FAELAKKKSKDPGASDGGDLGFFTKDQMVPEFSAAAFALEPGKI-SDPIKTQFGWHIIKV 236

Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
              +       D+  + + Q + +      ++ L+    + 
Sbjct: 237 EEKRNRKPPSFDQVKAQIEQYVTRKAQSDYVSKLRQAAKIE 277


>gi|218529730|ref|YP_002420546.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           chloromethanicum CM4]
 gi|240138037|ref|YP_002962509.1| putative cell-binding factor 2 precursor (Major antigen peb4A),
           cbf2 [Methylobacterium extorquens AM1]
 gi|218522033|gb|ACK82618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           chloromethanicum CM4]
 gi|240008006|gb|ACS39232.1| putative cell-binding factor 2 precursor (Major antigen peb4A),
           cbf2 [Methylobacterium extorquens AM1]
          Length = 300

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 76/185 (41%), Gaps = 6/185 (3%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           Y R   +L D  E+E K  ++ +  +A YE+  +     E      ++  ++ EA +   
Sbjct: 117 YFRDKLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVESEDEAKKIAA 176

Query: 289 SLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            +K G+ F ++A    ++ G       LG FS+E +     AD+ F +   G  +  +  
Sbjct: 177 RVKGGEDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVKP-FADAAFKMT-PGQVSDPVKT 234

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  V   +     +F E+K+ I   +      + + +  +  +   A  T+    
Sbjct: 235 QFGWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVERAGSTATPAA 294

Query: 405 SRREK 409
              +K
Sbjct: 295 GETKK 299



 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 16/158 (10%)

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA--------NQLVLEYSKEGKNFRDI 520
           K   P   + L E      +  K++K  EEV ++          + +    K G++F  I
Sbjct: 134 KAVTPEAAKALYE------QTVKSMKPEEEVRARHILVESEDEAKKIAARVKGGEDFAKI 187

Query: 521 GKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
              +     +  +   +     +          F      V   P++    + V +V   
Sbjct: 188 AGEVSKDPGSKTEGGDLGWFSQERMVKPFADAAFKMTPGQV-SDPVKTQFGWHVLRVEEK 246

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +  PV   D+    + Q + +      I  L+    V 
Sbjct: 247 RTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284


>gi|167765104|ref|ZP_02437217.1| hypothetical protein BACSTE_03490 [Bacteroides stercoris ATCC
           43183]
 gi|167696732|gb|EDS13311.1| hypothetical protein BACSTE_03490 [Bacteroides stercoris ATCC
           43183]
          Length = 712

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 95/727 (13%), Positives = 208/727 (28%), Gaps = 136/727 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     S  V  V  + +    F    +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETISAQDFQALVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   ++    G    S+  ++  +  ++    V+   ++   E +GL      +   I  
Sbjct: 61  EYTEVVKFSSGLNALSDE-QTNQIKDEVWRAYVNNKLIENEAEKLGLTVSKAELQAIIDA 119

Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHY----------TK 157
                 +   F       F  D+    L       +  +   +Y ++Y           K
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQM-PAQYAEYYNSMYNFWSFVEK 178

Query: 158 MLSRTDVVG-------------------MFVGGMRPSNLLL------------------- 179
            L +  +                      F   +  S+LLL                   
Sbjct: 179 SLIQARLQEKYQALITKSLFSNPVEAEDAFNARVDQSDLLLAAVPYSSIVDSTIVIKESE 238

Query: 180 --------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW---FEKYKDNYR--- 225
                    +  R Y E R++ YI +     P         + ++     +   +Y    
Sbjct: 239 LKDAYNKKKEQFRQYVETRNIKYIDVQVTASPEDKADIQKEVEEYTVQLAENPSDYSNFI 298

Query: 226 -----APEYKRISYI----LFDVHEKEKKIEI----------SNDELQAEYEKNKEKYFS 266
                  +Y  + Y       DV  +   +++          S++ + +   K       
Sbjct: 299 RSTGSTQQYVDLFYTDKALPADVVARLDSVKVGGVYGPYYNASDNTINSF--KKLASAAM 356

Query: 267 PEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318
           P+     Q+    +  A      D  + ++K G  F ++A++ G++   + IS  ++   
Sbjct: 357 PDSIQYRQIQVVAEDAAKTKTLADSIYTAIKGGADFAEIAKKYGQTGEATWISSANYEGA 416

Query: 319 YIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
            +   +L   +  +   + +   +  G    VI  V N K         VK      +  
Sbjct: 417 QVDGDNLKYIAAITTLGQNELANLALGQAN-VILQVMNKKA--------VKDKYKVAVIK 467

Query: 378 ---TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
                + E   + Y    +F+A   ++D++    +     L  +D          +  + 
Sbjct: 468 RPVEFSKETYSKAYNDFSQFIAANNTLDKLVANAEDAGYRL--LDRTDLYSSEHAIGGVK 525

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
             ++ L   F                   M V +   IP   R L  V   ++ +    K
Sbjct: 526 GTKEALRWAFAAKAGEVSGLYECGESDHMMVVAVTNIIPEGYRPLSMVQEQLRSEILRDK 585

Query: 495 TAEEVSSKANQLVLEYSKEGKNFRD----IGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
                  KA +++ +    G    D    +   +  S+                    + 
Sbjct: 586 -------KAEKIMADMKAAGATTFDQYKNMANAVSDSVKHVTFAAPAYVPALRSSEPLVG 638

Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
              S         PI+      V +    +        +      + M+  + +  +  L
Sbjct: 639 AYASIAELNKLSAPIKGNGGVFVLQPYAKEKLNETYNQETEEATLEGMHARIANQFMNDL 698

Query: 611 KSQYSVT 617
               +V 
Sbjct: 699 YLNANVK 705


>gi|301059212|ref|ZP_07200150.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
 gi|300446702|gb|EFK10529.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
          Length = 343

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/391 (15%), Positives = 122/391 (31%), Gaps = 92/391 (23%)

Query: 4   IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
            I K        +FL+V     L +              V+ VG Q++            
Sbjct: 23  FIFKRKSNIFYTLFLLVTAFGGLFFVEGCDRIGKDPGPVVLVVGDQQLTADVLKQ----- 77

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
             ++       + ++   +  +   +LDN++    + ++ +  G+          +    
Sbjct: 78  -NLLLASEDLPIPAKE--TENIKTALLDNIIDRYLILEYAKQHGIVVSEKEFQARLIDIK 134

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
                   +S  +F   L R+  +   ++  + + +    V+      M P +       
Sbjct: 135 ------KGYSESLFEEMLLRKWGDPDVWMKRFKEQIVIEKVINAVTVHMEPPDY------ 182

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
                                        +   FE   ++Y+APE               
Sbjct: 183 ---------------------------KEMKARFESNPNHYKAPE--------------- 200

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
                                         Q+    +K+A+E +  ++ G+    LA + 
Sbjct: 201 -------------------------EIRFRQIFCRTKKKANELYGKIRSGESLASLARKY 235

Query: 304 G---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
               +++    +G  +K  I D SL   +F +A  GD +PV  G+ GY I  V + +P  
Sbjct: 236 SEGPEAVDGGEVGWVAKG-ILDESLDKMLFQMA-PGDISPVTKGASGYHIFEVMDRRPGG 293

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +F E+   I   +  T+    +KE  + L
Sbjct: 294 FRAFSEIIDGIEEDLCQTRRMSFIKEWLQSL 324



 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 6/141 (4%)

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
           ++ +  +       KAN+L  +  + G++   + +         +               
Sbjct: 200 EEIRFRQIFCRTKKKANELYGKI-RSGESLASLARKYSEGPEAVDGGEVGWVAKGILDES 258

Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT----QMMNKDLL 603
               +F      +     +    Y +F+V + + G  +   + I  +     Q      +
Sbjct: 259 LDKMLFQMAPGDISPVT-KGASGYHIFEVMDRRPGGFRAFSEIIDGIEEDLCQTRRMSFI 317

Query: 604 DSVIAYLKSQYSVTVHDNLIQ 624
              +  L+S   V ++   I 
Sbjct: 318 KEWLQSLRSDIRVKINQKAID 338


>gi|258593267|emb|CBE69606.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [NC10
           bacterium 'Dutch sediment']
          Length = 351

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/376 (16%), Positives = 121/376 (32%), Gaps = 73/376 (19%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           +++L   F   G    +        V  V    +  +       Q +  I ++       
Sbjct: 37  VILLLSVFAASGADAVIL----DRIVAVVNDDVITLTDVQEEGIQAIRRIVRETLGAERE 92

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
              RS   +++ILD L+      Q      +E     +   I        ++   S +  
Sbjct: 93  RLLRST--ERQILDELILRRLQLQEATKEKIETAPAEIQSAIEE---LKKRNGLASDEEL 147

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
            + L+RE ++E+++       +  T +V                        R V     
Sbjct: 148 RAALSREQLSEEQFRKGIADQVMLTKLVA-----------------------RRVR---- 180

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                 A     +  + Q++E+ +D +R     +I ++L     +    E+S        
Sbjct: 181 ------AKVVVLDEEVQQYYEQRQDQFREIPQFKIRHLLVATPPQATPGELSRA------ 228

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG--SF 315
                                 +K  +EA   LKKG +F  +A++  +     S G    
Sbjct: 229 ----------------------KKRIEEAQTLLKKGTQFATVAKQYAEGPLASSSGEVWT 266

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            K       L  +  +L   G  + +I    G+ +  V    P  T+SF +VK+ +   +
Sbjct: 267 MKHGELAPELEQAALALP-IGQPSGIITTPAGFHLIVVEERVPGQTLSFDQVKERLRALL 325

Query: 376 RITKASEKVKEDYKRL 391
              K   K KE  + L
Sbjct: 326 FEQKTETKFKEWIESL 341


>gi|308172978|ref|YP_003919683.1| molecular chaperone lipoprotein [Bacillus amyloliquefaciens DSM 7]
 gi|307605842|emb|CBI42213.1| molecular chaperone lipoprotein [Bacillus amyloliquefaciens DSM 7]
          Length = 285

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 82/205 (40%), Gaps = 16/205 (7%)

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVH 240
             +   E        ++++ +          L   +   K  Y       ++ Y L    
Sbjct: 54  LTQLVQEKVLAKKYKVSDKEIDNKLKEYKTQLGDQYSALKQQYGEDYLKDQVKYELLAQK 113

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
             +  I++++ + +  Y+  K K           ++  ++K ADE  + LKKG+KF  LA
Sbjct: 114 AAKDNIKVTDSDTKEYYDGLKGKI------RASHILVADKKTADEVEKKLKKGEKFETLA 167

Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +E     S      LG F K+ + D + + + F L K G  +  +   FGY I   +  +
Sbjct: 168 KEYSTDSSKDNGGDLGWFDKKSM-DETFSKAAFGL-KVGQVSDPVKTKFGYHIIKKTEER 225

Query: 358 PSFTVSFQEVKKDIANQMRITKASE 382
                 + ++KK++  ++   K ++
Sbjct: 226 GK----YDDMKKELKEEVLKQKLND 246


>gi|255321569|ref|ZP_05362727.1| trimethylamiNe-N-oxide reductase 1 [Campylobacter showae RM3277]
 gi|255301425|gb|EET80684.1| trimethylamiNe-N-oxide reductase 1 [Campylobacter showae RM3277]
          Length = 270

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 11/163 (6%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG--- 293
           +      I++S  E+   Y KNK ++  P     + ++   +K+A++   +LK  KG   
Sbjct: 100 MKRIFDNIKVSEGEISDFYNKNKAEFAVPAQVRAKHILVATEKDANDIIAALKGLKGDEL 159

Query: 294 -KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            KKF +LA+    +QG + +   LG F +  +     AD+ F+L K       +  +FGY
Sbjct: 160 VKKFEELAKSKSTDQGSAANGGELGWFGQSQMVKP-FADAAFALKKGEVTQKPVKSNFGY 218

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            +    + K + TV   EVK  I   +++ K    +++    L
Sbjct: 219 HVILKEDSKAAGTVGLNEVKPQIEGNIKMEKFRNDIRKRGDEL 261


>gi|241206516|ref|YP_002977612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860406|gb|ACS58073.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 293

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 17/234 (7%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            + ++++             L D  K+    + ++D  +L         D ++       
Sbjct: 36  EIHQSELDLAVANLDPQLAQLPDDQKKVAALSAAIDVKLLAADAAAEKLDQTDE------ 89

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
                 ++          L + + K+  ++ ++ DE++A Y+K        E      ++
Sbjct: 90  ------FKKRMQYLTDRELHNAYFKKHVVDIVTPDEVKARYDKEVAALPKQEEVHARHIL 143

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333
              + EA +  + L  GK F +LA+E+    +      LG FS+  +      D+ F+L 
Sbjct: 144 VKTEDEAKDIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVK-EFEDAAFALE 202

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           K       +   FG+ +  V + + +    F++V+  +   +   K  E + + 
Sbjct: 203 KGTYSKTPVKTDFGFHVIKVEDKRDAPPPPFEQVQDQVRQLVMRDKYLELLNKA 256


>gi|189501506|ref|YP_001957223.1| hypothetical protein Aasi_0039 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189496947|gb|ACE05494.1| hypothetical protein Aasi_0039 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 597

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 81/608 (13%), Positives = 197/608 (32%), Gaps = 78/608 (12%)

Query: 4   IIRKASRTWVAKIFLVVLFVPFL---IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
            IR+ +R  +  + + +LF  F+   ++GL+    + + S  +  V  ++V    F +  
Sbjct: 6   KIRERTRLLIVVVSIGLLF--FIARELFGLN--PLTSNNSPIIGKVAGKEVTLREFQDRL 61

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                      G   + +   +  L K+    L +    D+  +D+G+      +   + 
Sbjct: 62  DDLQHNFLMHYGQ--SPDEEENTTLRKQAWRQLTNEIIYDKVCKDLGITVGSDELVDMVQ 119

Query: 121 RS-------PLFHGKDNKFSHDV----FVSRLAREGINEKEYIDHYTKMLS----RTDVV 165
            +         F  ++ K  +      ++  LA+   N + +     ++L+    +    
Sbjct: 120 GTHIHPDLKAAFTNRETKEFNKKDLLAYLQSLAQVPANNQRHWHTLERILAASRCQDKFN 179

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNY 224
            +    +  ++L              + Y+ +  + +   +   ++A+L ++  K+  +Y
Sbjct: 180 QLMDQSVFVNSLEAQHQFNINNTTLDIQYLYVPYKSIKKESTSITDAMLKEYLAKHTADY 239

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
           +  E K I Y+ F +   +        ELQ                              
Sbjct: 240 QVEESKHIRYVTFPIVASKNDKLAFQKELQKL---------------------------K 272

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           E F + ++   F  +  +   +L  +     +++ +P   +     +  KKG     +  
Sbjct: 273 EDFANTQEASAFASIHTDTDPTLVYLQ---CTEKDLPAPLVEHK--NTLKKGMVVGPLAI 327

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR-ITKASEKVKEDYKRLEEFLALGTSMDE 403
              Y    V N+  +    ++ V   I  ++    +  EK+          +      + 
Sbjct: 328 GKDYKFYKVVNLVDATPKKYELV--VIEKRLAPSDETKEKIFRKADDFASQVTNKAQFET 385

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
              +  +   +  +           ++  +    +L+  ++             L +  Y
Sbjct: 386 QVAKYSLQVQEAKV------GKDDTDINKLTNARELVRWLYNSAKVGQVSSIFELTNN-Y 438

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           +   +     A    L+EV  DVK+     +  + ++ K   +            ++ K 
Sbjct: 439 VIAMVASHTHAGTASLDEVKKDVKQKAINEQRVKIITEKLQPIAN------LPLEELAKQ 492

Query: 524 LG--ASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
            G  A + T  Q+    N  +  G     ISQ FS      +   I +    VV  V   
Sbjct: 493 YGGEAKIFTVPQVKFSANTLQGIGSAPKTISQAFSLQPGQ-RSKIIADLSGIVVLDVIQH 551

Query: 580 KVGPVQEK 587
           +   + + 
Sbjct: 552 QTSKLPDS 559


>gi|256545179|ref|ZP_05472545.1| foldase protein PrsA 1 [Anaerococcus vaginalis ATCC 51170]
 gi|256399220|gb|EEU12831.1| foldase protein PrsA 1 [Anaerococcus vaginalis ATCC 51170]
          Length = 339

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 106/260 (40%), Gaps = 27/260 (10%)

Query: 146 INEKEYIDHY----TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
           I +  Y D        + SR  +    V  +    L+ D  K+    N  VD   L+++ 
Sbjct: 59  ITKDSYKDEMSFYSAMLASRQQLKPSIVQMLVQDKLIADDMKKN---NVKVDDKALDDKF 115

Query: 202 VPAIADPS-----NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
           +  +         + +L   +    D ++    K   Y        E+K  +   +++  
Sbjct: 116 LQYVQQFGGQEKFDKMLED-YNMSSDKFKETIKKDEIYQKHRAW-FEEKNPVDEKQIKKY 173

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISL 312
           YE+NK+            ++  ++  A +  + L  G+ F +LA+E  K  +       L
Sbjct: 174 YEENKDTLS---QVKASHILVADEATAKQVKEKLDNGEDFAKLAKEYSKDTANAEKGGDL 230

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           G F+K+ +     AD  FS+ KK + +  +  S+GY I  V++ K S     + +K +I+
Sbjct: 231 GYFTKDKMVK-EFADKAFSM-KKDEVSDPVKTSYGYHIIKVTDKKDSP----EALKDEIS 284

Query: 373 NQMRITKASEKVKEDYKRLE 392
             +   K S+ + + + + +
Sbjct: 285 KTLNDKKYSDYLTDLFNKAK 304


>gi|39933588|ref|NP_945864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris CGA009]
 gi|39647434|emb|CAE25955.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris CGA009]
          Length = 311

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 82/214 (38%), Gaps = 9/214 (4%)

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
             +    +R  + +              +  +        D  +  ++ R   ++ DV  
Sbjct: 68  LAQLDPASRKENVLAFLIDMKIVAKAAEDKKIQD----NADFKKRLDFARNRLLMDDVLA 123

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
            E K   +++ ++  Y++  ++    +      ++   + EA    + LKKG  F +LA+
Sbjct: 124 AEGKAATTDEAMKKVYDEAAKQISGEQEVHARHILVETEDEAKAVAEELKKGADFAELAK 183

Query: 302 EQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           ++ K         LG F+K+ +     + + F+L + G  +  I   FG+ I  V   + 
Sbjct: 184 KKSKDPGASDGGDLGFFTKDQMV-PEFSAAAFAL-EPGKISDPIKTQFGWHIIKVEEKRN 241

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               SF +VK  I   +     S+ V +  +  +
Sbjct: 242 RKPPSFDQVKAQIEQYVTRKAQSDYVSKLRQAAK 275



 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 83/221 (37%), Gaps = 14/221 (6%)

Query: 399 TSMDEISRREKIVS--IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
             +D  SR+E +++  ID+ +V  A +D K ++ A    +          DD L+ +   
Sbjct: 69  AQLDPASRKENVLAFLIDMKIVAKAAEDKKIQDNADFKKRLDFARNRLLMDDVLAAEGKA 128

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
           A  D +     +K+      +++     +V      V+T +E  + A +L     K+G +
Sbjct: 129 ATTDEA-----MKKVYDEAAKQIS-GEQEVHARHILVETEDEAKAVAEEL-----KKGAD 177

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
           F ++ K        ++  +           +  +  F+     +   PI+    + + KV
Sbjct: 178 FAELAKKKSKDPGASDGGDLGFFTKDQMVPEFSAAAFALEPGKI-SDPIKTQFGWHIIKV 236

Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
              +       D+  + + Q + +      ++ L+    + 
Sbjct: 237 EEKRNRKPPSFDQVKAQIEQYVTRKAQSDYVSKLRQAAKIE 277


>gi|206890921|ref|YP_002247897.1| hypothetical protein THEYE_A0043 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742859|gb|ACI21916.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 196

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 75/203 (36%), Gaps = 9/203 (4%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +RK ++ +       ++ + F+ WG+            V  V  QK+    F  ++
Sbjct: 1   MIKTLRKNAKYF--YFLFFLVIITFVFWGVG--TVDKPKVEYVADVDGQKISAERFWRNY 56

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++      +      +       GL +K+L++L++   L    +   +EA    V   I 
Sbjct: 57  EEIRRFYREVFK---DKAAEMEQGLKEKVLEDLINEEILLWLAKKYEIEATDKEVQDAIV 113

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
             P F  ++  F  D++   L    +N  +Y     + ++    + +       S +   
Sbjct: 114 NDPRF-MRNGIFQRDIYFQILKLNRLNPAQYEASLKREITIGKTIQVIAFSKGASEISDS 172

Query: 181 -QAKRFYFENRSVDYIVLNNRHV 202
              K F    RS   I +N   +
Sbjct: 173 VYIKAFLNSIRSQIKIKINKEAL 195


>gi|163850906|ref|YP_001638949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           extorquens PA1]
 gi|163662511|gb|ABY29878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           extorquens PA1]
          Length = 300

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 76/185 (41%), Gaps = 6/185 (3%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           Y R   +L D  E+E K  ++ +  +A YE+  +     E      ++  ++ EA +   
Sbjct: 117 YFRDKLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVESEDEAKKIAA 176

Query: 289 SLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            +K G+ F ++A    ++ G       LG FS+E +     AD+ F +   G  +  +  
Sbjct: 177 RVKGGEDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVKP-FADAAFKMT-PGQVSDPVKT 234

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  V   +     +F E+K+ I   +      + + +  +  +   A  T+    
Sbjct: 235 QFGWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVERAGSTATPAA 294

Query: 405 SRREK 409
              +K
Sbjct: 295 GETKK 299



 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 12/228 (5%)

Query: 400 SMDEISRREKIVSIDLPLVDFAGK-DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
           +  +++   +  ++ LP VD   K ++    +  +    Q        D P  K      
Sbjct: 59  TAADLAIAAEDPALSLPGVDEGAKQNLLVDYMVDLKVGAQAAESAEVGDAPEFKRKLAYF 118

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA--------NQLVLEY 510
            D   +     E    +    E      ++  K++K  EEV ++          + +   
Sbjct: 119 RD-KLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVESEDEAKKIAAR 177

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
            K G++F  I   +     +  +   +     +          F      V   P++   
Sbjct: 178 VKGGEDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVKPFADAAFKMTPGQV-SDPVKTQF 236

Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            + V +V   +  PV   D+    + Q + +      I  L+    V 
Sbjct: 237 GWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284


>gi|222087317|ref|YP_002545854.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Agrobacterium radiobacter K84]
 gi|221724765|gb|ACM27921.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Agrobacterium radiobacter K84]
          Length = 300

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 15/245 (6%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            + ++++             L D  K+    + S+D  +L         D +       F
Sbjct: 39  EIHQSELDLAIANLDPQLGQLPDDQKKVAALSASIDVKLLAKDAAAEKLDQTPD-----F 93

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           + +    R  E     +             I++DE++A Y+K        E      ++ 
Sbjct: 94  QSHMAYLRDRELHNAYFKAHVADG------ITDDEVKARYDKEVAALPKQEEVHARHILV 147

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAK 334
             + EA    + L  GK F  LA+E+           LG F+   +      D+ F+L  
Sbjct: 148 KTEDEAKAIIKELDAGKDFATLAKEKSTDPNKADGGDLGYFAHGRMVK-EFEDAAFALPV 206

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
                  +   FG+ +  V + + +    F +VK  +   +   K  E + +  +  +  
Sbjct: 207 GTYTKTPVKSDFGWHVIKVEDKRVAPPPPFDQVKDQVRQLVMRDKYLELLNKAKQNTKVA 266

Query: 395 LALGT 399
           ++   
Sbjct: 267 ISDPA 271



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 8/155 (5%)

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKA--------NQLVLEYSKEGKNFRDIGKNLGASLLTT 531
           +EV     K+   +   EEV ++          + +++    GK+F  + K         
Sbjct: 121 DEVKARYDKEVAALPKQEEVHARHILVKTEDEAKAIIKELDAGKDFATLAKEKSTDPNKA 180

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
           +  +     +     +     F+ PV      P+++   + V KV + +V P    D+  
Sbjct: 181 DGGDLGYFAHGRMVKEFEDAAFALPVGTYTKTPVKSDFGWHVIKVEDKRVAPPPPFDQVK 240

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
             + Q++ +D    ++   K    V + D  + + 
Sbjct: 241 DQVRQLVMRDKYLELLNKAKQNTKVAISDPALSKA 275


>gi|218673531|ref|ZP_03523200.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli GR56]
          Length = 293

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 84/226 (37%), Gaps = 17/226 (7%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            + ++++             L D  K+    + ++D  +L    +    D +        
Sbjct: 36  EIHQSELDLAVANLDPQLAQLPDDQKKVAALSAAIDVKLLAADAITEKLDQTEE------ 89

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
                 ++          L + + K+  ++ ++ +E++A Y+K        E      ++
Sbjct: 90  ------FKKRMQYLSDRELHNAYFKKHVVDTVTPEEIKARYDKEVAALPKQEEVHARHIL 143

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333
              + EA E  + L  GK F +LA+E+    +      LG FS+  +      D+ F+L 
Sbjct: 144 VKTEDEAKEIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVK-EFEDAAFALE 202

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           K       +   FGY +  V + + +    F +V+  +   +   K
Sbjct: 203 KGTYSKTPVKTDFGYHVIKVEDKRDAPPPPFDQVQDQVRQLVMRDK 248


>gi|289423524|ref|ZP_06425325.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
 gi|289156026|gb|EFD04690.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
          Length = 252

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 6/158 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQ 298
           ++    +E+S++E    YE+NK ++ SPE+ + + ++   + +A E    + KK   F  
Sbjct: 87  NKIIASVEVSDEEKLNYYEENKAQFVSPEMVSAKHILVDEEDQAKEIKTKIDKKEMSFED 146

Query: 299 LAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
            A E  K  S      LG F K  +      ++ F+L + G  +  +   FGY I  V +
Sbjct: 147 AAVEYSKCPSNMKGGDLGEFGKGQMV-PEFEEAAFAL-EVGKVSEPVKSQFGYHIIKVES 204

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            K    + F++VK ++AN +   K +E        L +
Sbjct: 205 HKEEGQLEFEDVKDEVANAVAYKKQNEAFVGKLTELTD 242


>gi|322421262|ref|YP_004200485.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320127649|gb|ADW15209.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 342

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 119/361 (32%), Gaps = 75/361 (20%)

Query: 34  LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93
           L   S +  V  V  + +  +    + K  L    +++   V  E  R+  + K+ ++ L
Sbjct: 39  LREGSPTDPVQKVNGKVITRAEVDRAVKALLD--QKQLRQPVALEELRA--VKKEAMEQL 94

Query: 94  VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
           VS   L Q  +   +     +V   IAR           S + F   +   G+       
Sbjct: 95  VSSELLYQAAQKTDIGDVEQKVAQVIARDRA-RYP----SDEAFARSVKEAGLTLPMLQQ 149

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
              K ++ +D +    G                                 A  +      
Sbjct: 150 LIRKEMAVSDFIETMFG---------------------------------ARINVGEDEA 176

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
             ++E  +D ++     R S IL  V    +  +      +AE                 
Sbjct: 177 RSFYEANRDRFKTGSSVRASQILVMVPGPSQDRDRERARERAEI---------------- 220

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
                           +K+G+ F  LA+      S      LG F+K  + D  L  ++F
Sbjct: 221 ------------LLHRVKEGENFGILAQSHSDCPSKARGGDLGFFNKGKL-DPGLEQAVF 267

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +L K G+ + ++  SFG+ I  ++  +     +++E + +I + ++  K    V E   +
Sbjct: 268 AL-KPGEISDIVQTSFGFHILKLTEKRGPRLETYEEARPEIYSYLKREKMLRLVAEYVAK 326

Query: 391 L 391
           L
Sbjct: 327 L 327


>gi|290770008|gb|ADD61774.1| putative protein [uncultured organism]
          Length = 712

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 95/727 (13%), Positives = 208/727 (28%), Gaps = 136/727 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     S  V  V  + +    F    +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETISAQDFQALVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   ++    G    S+  ++  +  ++    V+   ++   E +GL      +   I  
Sbjct: 61  EYTEVVKFSSGLNALSDE-QTNQIKDEVWRAYVNNKLIENEAEKLGLTVSKAELQAIIDA 119

Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHY----------TK 157
                 +   F       F  D+    L       +  +   +Y ++Y           K
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQM-PAQYAEYYNSMYNFWSFVEK 178

Query: 158 MLSRTDVVG-------------------MFVGGMRPSNLLL------------------- 179
            L +  +                      F   +  S+LLL                   
Sbjct: 179 SLIQARLQEKYQALITKSLFSNPVEAEDAFNARVDQSDLLLAAVPYSSIVDSTIVIKESE 238

Query: 180 --------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW---FEKYKDNYR--- 225
                    +  R Y E R++ YI +     P         + ++     +   +Y    
Sbjct: 239 LKDAYNKKKEQFRQYVETRNIKYIDVQVTASPEDKADIQKEVEEYTAQLAENPSDYSNFI 298

Query: 226 -----APEYKRISYI----LFDVHEKEKKIEI----------SNDELQAEYEKNKEKYFS 266
                  +Y  + Y       DV  +   +++          S++ + +   K       
Sbjct: 299 RSTGSTQQYVDLFYTDKALPADVVARLDSVKVGGVYGPYYNASDNTINSF--KKLASAAM 356

Query: 267 PEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318
           P+     Q+    +  A      D  + ++K G  F ++A++ G++   + IS  ++   
Sbjct: 357 PDSIQYRQIQVVAEDAAKTKTLADSIYTAIKGGADFAEIAKKYGQTGEATWISSANYEGA 416

Query: 319 YIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
            +   +L   +  +   + +   +  G    VI  V N K         VK      +  
Sbjct: 417 QVDGDNLKYIAAITTLGQNELANLALGQAN-VILQVMNKKA--------VKDKYKVAVIK 467

Query: 378 ---TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
                + E   + Y    +F+A   ++D++    +     L  +D          +  + 
Sbjct: 468 RPVEFSKETYSKAYNDFSQFIAANNTLDKLVANAEDAGYRL--LDRTDLYSSEHAIGGVK 525

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
             ++ L   F                   M V +   IP   R L  V   ++ +    K
Sbjct: 526 GTKEALRWAFAAKAGEVSGLYECGESDHMMVVAVTNIIPEGYRPLSMVQEQLRSEILRDK 585

Query: 495 TAEEVSSKANQLVLEYSKEGKNFRD----IGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
                  KA +++ +    G    D    +   +  S+                    + 
Sbjct: 586 -------KAEKIMADMKAAGATTFDQYKNMANAVSDSVKHVTFAAPAYVPALRSSEPLVG 638

Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
              S         PI+      V +    +        +      + M+  + +  +  L
Sbjct: 639 AYASIAELNKLSAPIKGNGGVFVLQPYAKEKLNETYNQETEEATLEGMHARIANQFMNDL 698

Query: 611 KSQYSVT 617
               +V 
Sbjct: 699 YLNANVK 705


>gi|16078059|ref|NP_388876.1| molecular chaperone lipoprotein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221308834|ref|ZP_03590681.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313157|ref|ZP_03594962.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221318081|ref|ZP_03599375.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322356|ref|ZP_03603650.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. SMY]
 gi|131027|sp|P24327|PRSA_BACSU RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|39782|emb|CAA40543.1| 33kDa lipoprotein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2226124|emb|CAA74418.1| 33kDa lipoprotein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633331|emb|CAB12835.1| molecular chaperone lipoprotein [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 292

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 89/205 (43%), Gaps = 26/205 (12%)

Query: 196 VLNNRHVPAIADPSNAV----LTQWFEKYKDNYRAPEY--------KRISYILFDVHEKE 243
           ++  + +      S+      L ++  +  D Y A E         +++ Y L      +
Sbjct: 57  LVQEKVLDKKYKVSDKEIDNKLKEYKTQLGDQYTALEKQYGKDYLKEQVKYELLTQKAAK 116

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
             I++++ +++  +E  K K           ++  ++K A+E  + LKKG+KF  LA+E 
Sbjct: 117 DNIKVTDADIKEYWEGLKGKI------RASHILVADKKTAEEVEKKLKKGEKFEDLAKEY 170

Query: 304 GKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
               S      LG F+KE   D + + + F L K G+ +  +   +GY I   +  +   
Sbjct: 171 STDSSASKGGDLGWFAKEGQMDETFSKAAFKL-KTGEVSDPVKTQYGYHIIKKTEERGK- 228

Query: 361 TVSFQEVKKDIANQMRITKASEKVK 385
              + ++KK++ +++   K ++   
Sbjct: 229 ---YDDMKKELKSEVLEQKLNDNAA 250


>gi|222053408|ref|YP_002535770.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
 gi|221562697|gb|ACM18669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
          Length = 296

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 17/164 (10%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSLK 291
             +E+ + EL+  Y+++++ +  PE   V  + F   K+A            ++  + LK
Sbjct: 114 ANVEVPDAELKKYYQEHEKDFVVPERVKVRHIYFAAAKDATAEVKAQARAKAEKIAEQLK 173

Query: 292 KGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           KG  F +LA E  +      +   LG  +           + FSL K G+ +PV+   FG
Sbjct: 174 KGGDFAKLAGENSEDTESAANGGDLGYLTPGKTNSEEFEKAAFSL-KAGEVSPVVETPFG 232

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           Y I  V   +   T +F+E K  I++ ++     +K +E    +
Sbjct: 233 YHIIKVDERQEKRTATFEETKDYISSTLKAQLEEKKAREFLDAV 276



 Score = 36.9 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 11/143 (7%)

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
           A +    +   + +   +++ E L  G    +++      +         G    GK   
Sbjct: 149 AAKDATAEVKAQARAKAEKIAEQLKKGGDFAKLAGENSEDTESAANGGDLGYLTPGKT-- 206

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
                E+     F           V  P G Y  +++ E    R    EE    +    K
Sbjct: 207 ---NSEEFEKAAFSL-KAGEVSPVVETPFG-YHIIKVDERQEKRTATFEETKDYISSTLK 261

Query: 492 TVKTAEEVSSKANQLVLEYSKEG 514
               A+    KA + +   +KEG
Sbjct: 262 ----AQLEEKKAREFLDAVAKEG 280


>gi|154685453|ref|YP_001420614.1| hypothetical protein RBAM_010190 [Bacillus amyloliquefaciens FZB42]
 gi|154351304|gb|ABS73383.1| PrsA [Bacillus amyloliquefaciens FZB42]
          Length = 283

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 81/205 (39%), Gaps = 16/205 (7%)

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVH 240
             +   E        + ++ +          L   +   K  Y       ++ Y L    
Sbjct: 54  LTQLVQEKVLAKKYKVTDKEIDTKLKEYKTQLGDQYSSLKQQYGEDYLKDQVKYELLAQK 113

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
             +  I++++ + +  Y+  K K           ++  ++K ADE  + LKKG+KF  LA
Sbjct: 114 AAKDNIKVTDSDTKEYYDGLKGKI------RASHILVADKKTADEVEKKLKKGEKFETLA 167

Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +E     S      LG F K+ + D + + + F L K G  +  +   FGY I   +  +
Sbjct: 168 KEYSTDSSKDNGGDLGWFDKKSM-DETFSKAAFGL-KVGQVSDPVKTKFGYHIIKKTEER 225

Query: 358 PSFTVSFQEVKKDIANQMRITKASE 382
                 + ++KK++  ++   K ++
Sbjct: 226 GK----YDDMKKELKEEVLKQKLND 246


>gi|296445011|ref|ZP_06886972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
 gi|296257432|gb|EFH04498.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
          Length = 294

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 64/148 (43%), Gaps = 4/148 (2%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
            K  ++ D ++  Y++  +            ++ P + EA  A + +K G+ F ++A+E 
Sbjct: 119 AKDAVTEDAIKKTYDEAAKNQKPETEVHAHHILVPTEDEAKAALKRVKGGEDFGKVADEV 178

Query: 304 GKSLS--DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
            K        LG F+K+ +     A++ + L + G  +  +   FG+ +  +   +P   
Sbjct: 179 SKDPGARGGDLGWFTKDRMV-PEFAEAAYKL-EPGQISDPVKTQFGWHVIKLDEKRPKVF 236

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYK 389
               +V++ ++  +     S+ + +  +
Sbjct: 237 PPLDQVREQVSRYVAQKAQSDLIVQLRE 264


>gi|189218309|ref|YP_001938951.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum
           infernorum V4]
 gi|189185167|gb|ACD82352.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum
           infernorum V4]
          Length = 332

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 99/343 (28%), Gaps = 67/343 (19%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
                   V  + + FS      +    ++ +         R +   L    L  L+   
Sbjct: 27  GSDGIAAIVNDKVITFSQVRKQVEPNEAVLRETYQGSELVNRIKEARL--SALRALIDRE 84

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV--FVSRLAREGINEKEYIDHY 155
            + Q  +          +   +           +F  D   F+  L   GI+E++Y    
Sbjct: 85  LIIQDFKSKKYAIPDSFIESRVRDI-----IRTQFDGDRIAFIRTLQASGISEEQY---- 135

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            + L    +V                                  ++V      S   + +
Sbjct: 136 KQQLLEQIIVQAMR-----------------------------MKNVSEPVIISPYQIEK 166

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +++ +   +  P   ++  I       + K    N +L+                     
Sbjct: 167 YYQDHIAQFFEPPQVKLRIIFLQKTSFKDKRATVNGQLEEY------------------- 207

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSL 332
             P ++ A E    L+ G  F +LA    +         LG  +K+ +    +A++ FS+
Sbjct: 208 -DPARETATELLSKLQLGADFAELARSYSEGPKRMDGGDLGWVTKDSL-RPEIAEAAFSM 265

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              G  + VI    GY I  + + +        EV+  I   +
Sbjct: 266 Y-PGQTSGVIETLDGYYIIRLEDKRKGKLKPISEVRTQIEGLL 307


>gi|312112916|ref|YP_004010512.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218045|gb|ADP69413.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 283

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 82/212 (38%), Gaps = 5/212 (2%)

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
                  +  KD      Y ++  +    +EK+ +  I++ + +A Y++   K       
Sbjct: 73  EAAKDKLDAAKDFEERAAYYKLRALRDTFYEKKVRDAITDAQAKAAYDEQIAKLKPEPEV 132

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++   ++EA +  + LK G  F +LA++     S      LG FSK  +  V   D
Sbjct: 133 RARHILVKTKEEAADLVKQLKGGADFNELAKKSADGPSANTGGDLGYFSKGQMVKV-FED 191

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           + F+L + G  +  +   FG+ +  V + +     SF EVK  I   +   +  E V++ 
Sbjct: 192 TAFAL-QPGQISDPVQSEFGWHVIKVEDKRNRPVPSFDEVKDQIVASLVQNQLRETVQKL 250

Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
               +  +        I    K  +I+     
Sbjct: 251 RSSAKVEIVDPELKKAIEEDAKAAAIETTTQQ 282



 Score = 36.9 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 6/145 (4%)

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
            +V+     VKT EE +    QL     K G +F ++ K            +        
Sbjct: 130 PEVRARHILVKTKEEAADLVKQL-----KGGADFNELAKKSADGPSANTGGDLGYFSKGQ 184

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603
                    F+     +   P+++   + V KV + +  PV   D+    +   + ++ L
Sbjct: 185 MVKVFEDTAFALQPGQI-SDPVQSEFGWHVIKVEDKRNRPVPSFDEVKDQIVASLVQNQL 243

Query: 604 DSVIAYLKSQYSVTVHDNLIQRYLD 628
              +  L+S   V + D  +++ ++
Sbjct: 244 RETVQKLRSSAKVEIVDPELKKAIE 268


>gi|328552623|gb|AEB23115.1| molecular chaperone lipoprotein [Bacillus amyloliquefaciens TA208]
 gi|328911027|gb|AEB62623.1| molecular chaperone lipoprotein [Bacillus amyloliquefaciens LL3]
          Length = 285

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 82/205 (40%), Gaps = 16/205 (7%)

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVH 240
             +   E        ++++ +          L   +   K  Y       ++ Y L    
Sbjct: 54  LTQLVQEKVLAKKYKVSDKEIDNKLKEYKTQLGDQYSALKQQYGEDYLKDQVKYELLAQK 113

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
             +  I++++ + +  Y+  K K           ++  ++K ADE  + LKKG+KF  LA
Sbjct: 114 AAKDNIKVTDSDTKEYYDGLKGKI------RASHILVADKKTADEVEKKLKKGEKFETLA 167

Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +E     S      LG F K+ + D + + + F L K G  +  +   FGY I   +  +
Sbjct: 168 KEYSTDSSKDNGGDLGWFDKKSM-DETFSKAAFGL-KVGQVSDPVKTKFGYHIIKKTEER 225

Query: 358 PSFTVSFQEVKKDIANQMRITKASE 382
                 + ++KK++  ++   K ++
Sbjct: 226 GK----YDDMKKELKEEVLKQKLND 246


>gi|193214213|ref|YP_001995412.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087690|gb|ACF12965.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 699

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 93/628 (14%), Positives = 203/628 (32%), Gaps = 64/628 (10%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           +  +R  S   V    +    +  +  WG+ D        +    V  + +  + +  ++
Sbjct: 1   MNKMRD-SMHIVLYALVGAFVLLIVFEWGM-DFTGLNRRKTDAGVVNGKPISLTEYDATY 58

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           ++ L    Q+   V  SE+  +  +  +  D LVS   LD   E++GL      +  E+ 
Sbjct: 59  RRYLDGFRQRSNNVEISEQMDAR-MRDQAWDFLVSQILLDDKYEELGLFVTDEEIVSEVM 117

Query: 121 RS-------PLFHGK-DNKFSHDVFVSRLAREGINEK--EYIDHYTKMLSRTDVVGMFVG 170
                      F      K + +   + +A     E   +  D   + L    +  + + 
Sbjct: 118 SDDPPAIIAQQFRDPKTGKINTEALQAAIASPENKEAWIQVEDIIRQELLFKKLQNLVMS 177

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA--DPSNAVLTQWFEKYKDNYRAPE 228
           G+  ++    +         S  YI+    H  A +  + + A +  +F ++K++Y+   
Sbjct: 178 GVFVTDDEARRLFDEQNTKVSGRYILFELAHAKADSLYEITEADIRNYFNEHKEDYKQDP 237

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            +  ++++F      +       E+  + E  K K+ +               + D  F 
Sbjct: 238 VREANFVMFSTAATTEDT----LEIIHDLEALKPKFQT--------------AKNDTEFV 279

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            L+   +F    +       D      S+ +  + SL        K GD          Y
Sbjct: 280 ELQS-DRFADFVKTYRPGKLDAK---ISRLFFDNPSL--------KVGDVVGPFQEFSEY 327

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I  +  I              +  +      +  V  + K+L   L       E++R +
Sbjct: 328 KIVKILAIDSDEDRQAHASHILLKPEGARRADTLAVMAEAKQLMRELTSDEKFAEVAREK 387

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
                        G   KG+ V    +++ +     G+     +             +++
Sbjct: 388 SDDPGSAQKGGDLGWFGKGRMVKE--FEDAVFHAKPGQIVGPIQSQF------GIHIIKV 439

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
                   R  E V   +K       T E V+ +A++     ++EG  F    K     +
Sbjct: 440 HGFEDRAIRGAELVR-KIKAG---PATLERVNRQADEFQYFATEEG--FEKTAKQDSVEI 493

Query: 529 LTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
             T +  +     +  F     +  F   V  V    I    ++V+ ++T       ++ 
Sbjct: 494 QKTGEFTKNGFIPSIGFNRSVSNFAFHEEVGAV-SPVISTQDAFVIMQLTGKNDDGYRKL 552

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYS 615
           D+ +     +  K L +  +A L+ +  
Sbjct: 553 DEDLK--NTIREKVLREKKMADLREKAK 578



 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%)

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           +  S   +G  +  I    G  IA ++     F   F+  K  + +Q+   K  E +   
Sbjct: 624 AALSALDEGKVSNPIETKRGVAIAELTKKIKGFDSDFEVRKNALKDQILQEKKKEVMNNW 683

Query: 388 YKRLEE 393
            K L+E
Sbjct: 684 LKDLKE 689


>gi|52079482|ref|YP_078273.1| molecular chaperone PrsA [Bacillus licheniformis ATCC 14580]
 gi|52784844|ref|YP_090673.1| hypothetical protein BLi01072 [Bacillus licheniformis ATCC 14580]
 gi|319646731|ref|ZP_08000960.1| PrsA protein [Bacillus sp. BT1B_CT2]
 gi|52002693|gb|AAU22635.1| molecular chaperone PrsA [Bacillus licheniformis ATCC 14580]
 gi|52347346|gb|AAU39980.1| PrsA [Bacillus licheniformis ATCC 14580]
 gi|317391319|gb|EFV72117.1| PrsA protein [Bacillus sp. BT1B_CT2]
          Length = 286

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 105/254 (41%), Gaps = 20/254 (7%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +++ D+            L +   ++   +   V    ++ +         +  L Q  +
Sbjct: 36  ITKEDLYQTLKDNAGADALNMLVQQKVLDDKYDVSDKEIDKKLNEYKKSMGD-QLNQLID 94

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           +  +++     ++I Y L      +  I++++D+++  Y+  K K        +  ++  
Sbjct: 95  QKGEDFV---KEQIKYELLMQKAAKDNIKVTDDDVKEYYDGLKGKI------HLSHILVK 145

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            +K A+E  + LKKG+KF  LA+E    G +     LG   K+   D     + F+L K 
Sbjct: 146 EKKTAEEVEKKLKKGEKFEDLAKEYSTDGTAEKGGDLGWVGKDDNMDKDFVKAAFAL-KT 204

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G+ +  +   FGY I      +      ++++KK++  +++  K +++   + + + + L
Sbjct: 205 GEISGPVKSQFGYHIIKKDEERGK----YEDMKKELKKEVQEQKQNDQ--TELQSVIDKL 258

Query: 396 ALGTSMDEISRREK 409
                +    +  K
Sbjct: 259 VKDADLKVKDKELK 272



 Score = 40.7 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 4/135 (2%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGAS-LLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
             K  + V +  K+G+ F D+ K                  ++     D +   F+    
Sbjct: 146 EKKTAEEVEKKLKKGEKFEDLAKEYSTDGTAEKGGDLGWVGKDDNMDKDFVKAAFALKTG 205

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSV 616
            +   P+++   Y + K    +      K +    + +    D   L SVI  L     +
Sbjct: 206 EI-SGPVKSQFGYHIIKKDEERGKYEDMKKELKKEVQEQKQNDQTELQSVIDKLVKDADL 264

Query: 617 TVHDNLIQRYLDGEK 631
            V D  +++ +D  +
Sbjct: 265 KVKDKELKKQVDQRQ 279


>gi|257459731|ref|ZP_05624840.1| foldase protein PrsA 2 [Campylobacter gracilis RM3268]
 gi|257443156|gb|EEV18290.1| foldase protein PrsA 2 [Campylobacter gracilis RM3268]
          Length = 274

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 13/162 (8%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------GK 294
           E+ K + +S++E +  Y++NK+ +  P+  T   ++  ++K A  A   L K       +
Sbjct: 105 EQAKDVSVSDEEAKKIYDENKQNFMQPDSVTASHILVADEKAAKNAIAKLSKVKKENLKE 164

Query: 295 KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYV 349
           +F +LA+E     S       LGSF K  +       + F+L K G+ +   +   FGY 
Sbjct: 165 EFNKLAKEISIDPSAKENGGDLGSFGKGMMV-PEFEKAAFAL-KDGEMSKTPVKTQFGYH 222

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +  + K + T+ F++VK  I NQ+  +K ++K+ +    L
Sbjct: 223 VIYKESSKKAETMPFEKVKDLIKNQLLPSKVNKKIDDKANEL 264



 Score = 37.7 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 88/282 (31%), Gaps = 47/282 (16%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
              K+  I I+++++     +  +               P   E  +    L K K  I 
Sbjct: 24  ATAKDANITITDEDVAPFLAQGMQHGGQE----------PTADEKKKLIDDLIKYKLLIA 73

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
            A++ G   SD        ++  +++     F+L ++     V              I  
Sbjct: 74  EAKKSGIENSD------EYKHQLELAKDGIAFNLWQREQAKDVSVSDE-----EAKKIYD 122

Query: 359 SFTVSFQE----------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
               +F +          V  + A +  I K S+  KE+ K     LA   S+D  ++  
Sbjct: 123 ENKQNFMQPDSVTASHILVADEKAAKNAIAKLSKVKKENLKEEFNKLAKEISIDPSAKEN 182

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
                    +   GK +            +     F   D       V    G ++  + 
Sbjct: 183 G------GDLGSFGKGM---------MVPEFEKAAFALKDGEMSKTPVKTQFGYHVIYK- 226

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
           + S  A     E+V   +K      K  +++  KAN+L  + 
Sbjct: 227 ESSKKAETMPFEKVKDLIKNQLLPSKVNKKIDDKANELFGKL 268


>gi|332826777|gb|EGJ99594.1| hypothetical protein HMPREF9455_04090 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 702

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 88/717 (12%), Positives = 221/717 (30%), Gaps = 120/717 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S   V  I + +L   F    ++  +  +   + V  V  + +    + +   
Sbjct: 4   LQKIRSKSGLLVGIIAVGLLAFVFPWGEVTTFVNKMRDKAFV--VDGKVITTKEYSDKIA 61

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
           Q      + +    + +   +  + +     +V    LD+    +GL      +   +  
Sbjct: 62  QW-ENFQKIMSNQSSLDEFTNSQIREMAYQQMVKEIMLDEEAGRLGLAVTPEELNDMVYG 120

Query: 121 --------RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYID-HYTKMLSRTDV------ 164
                   + P F      +F     +  L+    +     + H +++++R ++      
Sbjct: 121 PVVAPILYQIPFFANPQTGQFDKAYLMQFLSDINQDPTTMQEPHRSEIMARREIWAFIQN 180

Query: 165 -----------VGMFVGGMRPSNLLLDQAK------------------------------ 183
                        +  G +  S+     A                               
Sbjct: 181 MMKYQRLEEKYASLVAGSVLVSDTEAKAAYGDSKNVADIAYVVQRYSTLADSAVQVSDKE 240

Query: 184 ------------RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK---------D 222
                       +   E R + Y + +              +   +EK K          
Sbjct: 241 IKALYDLRKNNYKLDTELRKISYFIKDVVPSDEDYAAIEQEMNAAYEKLKMTDNPAIVLS 300

Query: 223 NYRAPEY---KRISYILFDVHEKEKKIEISN------DELQAEYEKNKEKYFSPEIRTVE 273
            Y +        ++ +  D     +   + +      ++      K  ++  + +   ++
Sbjct: 301 EYSSTYQDIFMAVTSLPADAKTFVESASVGDIFGPVREDQTYLMYKLIDRTNAADSIKLQ 360

Query: 274 QLVFP---NQKEA----DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
            +  P   ++K +    D     LK GK F  +A+E   + +   LG  ++  +    +A
Sbjct: 361 IIPLPQGLDEKTSAHIVDSIQSVLKGGKDFGAVADELFPNSNGGDLGWTNEAMLASAGIA 420

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
              F+ AK G+   +  G    +I       P   V    ++  +    +   A +    
Sbjct: 421 KECFAAAK-GEVLKLKVGGQDQLIRIADKTNPVPKVKLAVIQLPVIISDKTQNAID---- 475

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
               L +F++   +++   +  +     L  +  +        +       Q++   F  
Sbjct: 476 --NELNQFVSENGNLENFDKAAQAKGYSL--IQNSIISPSEIALGQATGTRQVIHWAF-- 529

Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
           ++ +       + D   + +   E        + EV T +K +    K       KA ++
Sbjct: 530 NEKVGSVKKFDMSDKRVVAIVKNEIT-GDYMPVSEVATALKTELINDK-------KAEKI 581

Query: 507 VLEY-SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK-CFP 564
           + +  +K   +     + +   + T N +    N     GY+ +  V+S   ++ K   P
Sbjct: 582 IADLKAKNLTSLDAYAQAVSGKVDTVNFVTFQTNNLSGIGYEPLMNVYSKLGQVNKLEAP 641

Query: 565 IENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           ++      V  VTN      +   ++    L Q     ++   ++ L+++ +V  + 
Sbjct: 642 MKGKSGVYVLNVTNKTEDTKEFNAEQTKQSLKQANYYQMMSQAVSILRNKMNVEDNR 698


>gi|229110311|ref|ZP_04239883.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15]
 gi|228673051|gb|EEL28323.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15]
          Length = 303

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 101/272 (37%), Gaps = 31/272 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217
           S  ++V    G +  S+      + +  +N S  V   VLN+++     + +   + +  
Sbjct: 47  SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQIKELK 105

Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +K  DN+         +     +    L    EK  K  ++  +++  Y+          
Sbjct: 106 DKMGDNFNTYMESNGVKNEAQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 156

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVS 324
              V  ++  ++K A E  + L  G+ F  LA++  +       G     F    +    
Sbjct: 157 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK-E 215

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             D+ + L + G  +  +  SFGY I  +++ K      ++E K +I  ++   +  +  
Sbjct: 216 FEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKDNIRKELEQQRIQD-- 270

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
            + ++++   L     +    +  K    +L 
Sbjct: 271 PQFHQQVTRELLKNADIKVSDKDLKDTFKELE 302


>gi|116254033|ref|YP_769871.1| foldase/peptidyl-prolyl cis-trans isomerase [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258681|emb|CAK09785.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 293

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 17/234 (7%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            + ++++             L D  K+    + ++D  +L         D ++       
Sbjct: 36  EIHQSELDLAVANLDPQLAQLPDDQKKVAALSAAIDVKLLAADAAAEKLDQTDE------ 89

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
                 ++          L + + K+  ++ ++ DE++A Y+K        E      ++
Sbjct: 90  ------FKKRMQYLSDRELHNAYFKKHVVDIVTPDEVKARYDKEVAALPKQEEVHARHIL 143

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333
              + EA +  + L  GK F +LA+E+    +      LG FS+  +      D+ F+L 
Sbjct: 144 VKTEDEAKDIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVK-EFEDAAFALE 202

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           K       +   FG+ +  V + + +    F++V+  +   +   K  E + + 
Sbjct: 203 KGTYSKTPVKTDFGFHVIKVEDKRDAPPPPFEQVQDQVRQLVMRDKYLELLNKA 256


>gi|163743876|ref|ZP_02151247.1| PPIC-type PPIASE domain protein [Phaeobacter gallaeciensis 2.10]
 gi|161382817|gb|EDQ07215.1| PPIC-type PPIASE domain protein [Phaeobacter gallaeciensis 2.10]
          Length = 172

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 65/159 (40%), Gaps = 5/159 (3%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           S+++L+  Y++        +      ++   +++A +    L  G  F  LA E+    S
Sbjct: 6   SDEDLRTAYDEKYTDGTGGDEFNASHILVETEEDAADIRAELDAGADFATLARERSTGPS 65

Query: 309 D---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 LG FSK  +      +++  +   GD +  +   FG+ +  +++ + S   +F 
Sbjct: 66  GPNGGELGWFSKGRMV-PEFEEAVLVMG-AGDVSDPVQTQFGWHVIKLNDRRTSAAPTFD 123

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
           EV++++A QMR     ++V                +D  
Sbjct: 124 EVREELATQMRQEAVEDRVLSLTTAATIERPEIEDLDPA 162


>gi|34557645|ref|NP_907460.1| cell binding factor 2 precursor major antigen PEB4A [Wolinella
           succinogenes DSM 1740]
 gi|34483362|emb|CAE10360.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Wolinella
           succinogenes]
          Length = 271

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-----KKG 293
           + ++    ++S  +++  Y++NKEK+  PE+   + ++  N+KEA E    +     K  
Sbjct: 103 MRQQMNNAKVSEGDMRKFYDENKEKFVQPELVKAKHILVQNEKEAKEVIAEIGKAGAKAS 162

Query: 294 KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           +KF +LA+ +    +      LG FSK+ +     A++ F+L K       +   FGY +
Sbjct: 163 EKFSELAKSKSIDPAGQNGGELGWFSKDQMV-PEFANAAFALQKGSYSKTPVKTQFGYHV 221

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            +  + K    + +++VK  I   ++I K  + V    K+L E 
Sbjct: 222 IYAEDKKAQAVLPYEDVKPQIEQNLKIQKFRDSVSSTAKKLREK 265


>gi|71083623|ref|YP_266342.1| SurA-like protein [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062736|gb|AAZ21739.1| hypothetical SurA-like protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 473

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 162/478 (33%), Gaps = 68/478 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+   +  S+  +  + L+ + +    +G     FS    + +  +    +    F++ +
Sbjct: 1   MINPFKNFSKKKIGGLLLIFVIIVAFGFGGFGGGFSTGNQNNIAKINNTNISTQDFMD-Y 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E G+  Q I   ++        + +++L  LVS   LD  IE++ L      +  +I 
Sbjct: 60  LNESGLSQQVIKENID------KNIIEELLSTLVSTTLLDLEIEELNLSITEDVLIRKIK 113

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +  FH ++  F   ++   L     +   +         +  +     GG +    L++
Sbjct: 114 NNKNFHDENGLFQRTLYEKFLLTNNSSAAMFEIRLKNNELQKQLFTYISGGTKSPEFLIN 173

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  +   +   ++YI L+          ++  +  + E+        E  +  YI F   
Sbjct: 174 KFYKENNKKLDIEYIDLST-FYKKKEMFTDNDIKFFVEENA------EKLKQDYIDFSF- 225

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                +EIS   L    + N+  +                 + D+    + K   F  + 
Sbjct: 226 -----VEISPKNLLGIDDFNQAFF----------------DKIDDIENQISKNIDFKTIV 264

Query: 301 EEQGKSLSDIS--LGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +    S ++++  +   +K+ I ++      D I  L   G +           I +  N
Sbjct: 265 KNLDISPTEVNSYINLDNKKIIENMIYNSREDKIEILENNGAY-----------IFYNIN 313

Query: 356 IKPSFTVSFQE--VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
              S     +   +K+ I N +   +  E  K   +++ +      S DE  +   I  I
Sbjct: 314 NSISKLPDLENPIIKEQITNLLFQKEKLEFNKNILEKINKKTFNQVSFDEFGKN-NIKEI 372

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
            L  ++   K              Q+L+ +     P++    +A  +      +  + 
Sbjct: 373 KLDSINDTKKFETN--------SIQILYSL-----PINSFTLIANNENDVFIAKTIKY 417


>gi|299143243|ref|ZP_07036323.1| foldase protein PrsA [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517728|gb|EFI41467.1| foldase protein PrsA [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 331

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 114/359 (31%), Gaps = 95/359 (26%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIG--------FVVNSERARSVGLDKKILDNLVS 95
            +V    +    ++  +  +        G           N ++     + +  L N++ 
Sbjct: 2   ATVNGTDLTEKDYVMQYAAQRNQYVLTAGSEDVLSQPSADNPKKTVDQAIKENTLKNMIQ 61

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              + Q      +  D  +V  EI        +      +++  +L   G   + Y  + 
Sbjct: 62  MELVKQDAAKSNIAVDQSKVDEEIKAII---TQMGG--EEIYKQKLEALGSTPEFYKSYL 116

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
           T++                      Q  + Y+E +  ++            +P++  + +
Sbjct: 117 TEL----------------------QLMKSYYETKIKEF------------EPTDEEIQK 142

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +++K KDN+                                                  +
Sbjct: 143 YYDKNKDNFF-------------------------------------------KAKASHI 159

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLA 333
           +    +EA++  + L KG  F ++A+E  K     + G    E+     +A+   +  + 
Sbjct: 160 LVETVEEANKLKKELNKGADFAEMAKENSKDPGSAANGGSLGEFKNGDMVAEFNDVVKIL 219

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           K G+ +  +   FGY I  V         +  EVK+++  Q+   K ++ +++  K  +
Sbjct: 220 KVGEISDPVKSKFGYHIVKVDEK---SARTLDEVKEELKQQLTQAKFTDYIEKMQKDAK 275


>gi|260432023|ref|ZP_05785994.1| ppic-type ppiase domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415851|gb|EEX09110.1| ppic-type ppiase domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 282

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
             ++++D +QA Y+    ++   +      ++   ++EA E    L  G  F +LA+E+ 
Sbjct: 112 DAQVTDDAIQAAYDAQFAEFQGEDEFNASHILVATEEEAKEIKAQLDDGADFAELAKEKS 171

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
              S     +LG F K  +       ++  L +KG  +  +   FG+ +  +++ + S  
Sbjct: 172 TGPSGPNGGALGWFGKGQMV-PEFEQAVIGL-EKGQVSDPVQTQFGWHVVILNDKRKSEA 229

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390
               EV+ ++A  +R      K+ E  + 
Sbjct: 230 PELAEVRDELAQSVRQEAIQAKIDELTQA 258


>gi|229070337|ref|ZP_04203584.1| Foldase protein prsA 1 [Bacillus cereus F65185]
 gi|229080050|ref|ZP_04212578.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2]
 gi|228703174|gb|EEL55632.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2]
 gi|228712775|gb|EEL64703.1| Foldase protein prsA 1 [Bacillus cereus F65185]
          Length = 303

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 103/272 (37%), Gaps = 31/272 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217
           S  ++V    G +  S+      + +  +N S  V   VLN+++     + +   L +  
Sbjct: 47  SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 105

Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +K  DN+         +  +  +    L    EK  K  ++  +++  Y+          
Sbjct: 106 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 156

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVS 324
              V  ++  ++K A E  + L  G+ F  LA++  +       G     F    +    
Sbjct: 157 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK-E 215

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             D+ + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +  
Sbjct: 216 FEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD-- 270

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
            + ++++   L     +    +  K    +L 
Sbjct: 271 PQFHQQVTRELLKNADIKVSDKDLKDTFKELE 302


>gi|39995126|ref|NP_951077.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39981888|gb|AAR33350.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
 gi|298504156|gb|ADI82879.1| peptidylprolyl cis-trans isomerase, PpiC-type, SurA family
           [Geobacter sulfurreducens KN400]
          Length = 321

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 112/363 (30%), Gaps = 78/363 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S  +  V  + V   +     +  L    ++         A    LD+  L+ L+    +
Sbjct: 26  SRILAVVNDEIVTSYAVDKEKRALLKEAERQQPPPDPKSLA---NLDEVALNRLIDKKLV 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +Q I ++ +      V   I        + NK S +  V+ LA +G++  +Y     + L
Sbjct: 83  EQKIRELDIRVGEEEVRQAIEDV----KRQNKLSQEALVAALANQGLSFDQYKAQIKEQL 138

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  +V                                    V +        + +++E 
Sbjct: 139 ERLRLVSQ---------------------------------EVRSKIQVGEREMREYYEA 165

Query: 220 YKDNYRAPEYKRIS--YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
            K  + A +  R    Y   D     ++++                              
Sbjct: 166 NKAKFGAEDIFRARNIYFKLDDKMSAEQVK------------------------------ 195

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLA 333
                A       + GK F +LA +         +   LG+F K  I      + +  + 
Sbjct: 196 KVMTTAMTVLHEAQSGKDFAELARQYSDDPAAKGNGGDLGTFRKGDIL-PEFEEQLTRM- 253

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           + G+ + +I+ + G  I  +          F++VK ++ + +   K+ ++  +    L +
Sbjct: 254 QPGEVSDLIYTATGLHIVKLEERSLGTPKPFEQVKAEVEDLVYRKKSEDRFNQWVADLRK 313

Query: 394 FLA 396
             A
Sbjct: 314 GAA 316


>gi|15643674|ref|NP_228720.1| basic membrane protein, putative [Thermotoga maritima MSB8]
 gi|4981448|gb|AAD35993.1|AE001755_16 basic membrane protein, putative [Thermotoga maritima MSB8]
          Length = 329

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/395 (12%), Positives = 119/395 (30%), Gaps = 86/395 (21%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS--SFINSWKQELGMISQKIGF 73
           IF+++  +   ++G      + + S+ V  V  + +              L  I+Q    
Sbjct: 5   IFVILAVLGISLFG----QATTTSSTVVAIVNGEPITSDLLELEADIDGILRSIAQIDMR 60

Query: 74  VVNSERARSVGLD------KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
             N       GL       +++L++L+    + Q  E  G+      V  E+        
Sbjct: 61  FFNVLTGTEEGLKLLLKYKQEVLNSLIDDLLIQQLAEKEGVGVSDEEVKKEV-------- 112

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
                        +   GI  ++                    G         +      
Sbjct: 113 ------EARLKETVESMGITLEDLDKFLQ------------SAGYGDLETFKKRLHWHVK 154

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
              S+  +      +   A  +      ++ + K+ YR P    +               
Sbjct: 155 TQLSLQRL---QEKITQNATVTLEEAQNYYNQNKETYRIPAAVHLY-------------- 197

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
                                     ++   ++ + DE    ++KG+ F+++A +     
Sbjct: 198 --------------------------RITTEDKSKMDEVLSKIRKGEDFLEVATQV---A 228

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           +   LG   +  + +  +   IF   + G           +V+  V   + S    F+EV
Sbjct: 229 TGGDLGWIEEGKL-EKDIESVIFDAPE-GAILGPFESEGKFVLYKVVEKRSSSYKKFEEV 286

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
           K++I +++   K ++   + + ++ E     + ++
Sbjct: 287 KQEIMDKLLADKRNQLWNDWFNKVFEEFKKNSHIE 321


>gi|325297347|ref|YP_004257264.1| peptidyl-prolyl cis-trans isomerase [Bacteroides salanitronis DSM
           18170]
 gi|324316900|gb|ADY34791.1| peptidyl-prolyl cis-trans isomerase [Bacteroides salanitronis DSM
           18170]
          Length = 711

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 85/717 (11%), Positives = 208/717 (29%), Gaps = 117/717 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F+       L    G   V  V  +K+    +     
Sbjct: 4   LQSIR--SKGPLLVIVIGLALFAFIAGDAWKVLQPHQGRQDVGEVNGEKLSAQEYQQLVD 61

Query: 62  QELGMISQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI- 119
           +   +I    G   +  ++     +  ++ +  V+   +    E +GL+     +   I 
Sbjct: 62  EFSEVIKLTNGLNSLTEDQL--TNVKDQVWNTYVTNQLIASEAEKLGLKVTDKELQAIID 119

Query: 120 -------ARSPLFHGKDNKFSHDVFVSRL---AREGIN--EKEYIDHYTKM--------- 158
                   ++P  + +   F  D+    L   A  G +    +Y+++Y  M         
Sbjct: 120 EGTNPLLMQTPFRNPQTGAFDKDMLKKFLVEYANLGSSQMPAQYVEYYQTMGNFWKFVEK 179

Query: 159 -----LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAV 212
                   +    +    +  + +  + A +       +    +    +  +    S++ 
Sbjct: 180 TLKASTLASKYQNLIAKSLISNPVAAEDAFKSRTAQSDILLAGVPYASISDSTITVSDSE 239

Query: 213 LTQWFEKYKDNYRAP-EYKRISYI-LFDVHEKEKKIEISNDELQA--------------- 255
           +   + + K+ Y+ P E + I +I +  +     +  +  +  +                
Sbjct: 240 IKDLYNERKEAYKQPVETRDIQFIDVHVLPSDADRAAVLKEATEYSNQLDKTTGDYAAFI 299

Query: 256 --------------------------------------EYEKNKEKYFS---------PE 268
                                                  Y  + + Y +         P+
Sbjct: 300 RSTGSAVNYADFAINKTALPQDVVARLDSTSLNEVYGPYYNSSDDSYNAFKILAKTTAPD 359

Query: 269 IRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
                Q+      E      AD  F ++K G  F ++A+  G++     + + S E    
Sbjct: 360 SIQFRQIQVVADTEAKRTALADSIFDAIKGGADFAEIAKAYGQTGESTWVNAMSWESAAL 419

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
            +   +            + +   G   +I  V+  K        +V      ++ +  +
Sbjct: 420 DADNTTYIKTLINQPVNELKNLQLGQVNLIIQVTGKKA--MKPKYQVA---VIKLPVEFS 474

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
            E   + Y +  +F+A  T+++++ +  +     +        D     V  +   ++ L
Sbjct: 475 KETYSDAYNKFSQFVAQNTTVEDMKKNAEEAGYTVIPRSDFRSDEHY--VGGVRSTQEAL 532

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
             +F   +           +   M V ++         + +V   +K +    K A ++ 
Sbjct: 533 RWIFDAKEGEVSPLYECGENDHMMVVGLERVNKKGYVNINKVANTLKAEIIRDKKAAQLM 592

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           S+          +G +          +      I+             IS   S      
Sbjct: 593 SQMQGFNSLDQVKGMSNAVSDSVKHVTFSAPAYISVTHA-----SEPAISAYASKAETGK 647

Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
              PI+      + +      G  +   K        M  +  +  I  L+ +  VT
Sbjct: 648 VSAPIKGNAGVYMIQAYAKDNGTEEFDAKKEEASLSSMAPNYANQCIYELREKAKVT 704


>gi|110799431|ref|YP_697171.1| peptidylprolyl isomerase [Clostridium perfringens ATCC 13124]
 gi|123049564|sp|Q0TMG9|PRSA_CLOP1 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|110674078|gb|ABG83065.1| putative foldase protein PrsA [Clostridium perfringens ATCC 13124]
          Length = 342

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/386 (13%), Positives = 114/386 (29%), Gaps = 73/386 (18%)

Query: 9   SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
            +  VA   + VL    +   + +   +    +TV +V  +K+      +  K     + 
Sbjct: 4   VKKIVASALVGVLMFSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFAQMK 63

Query: 69  QKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
            + G     +   +  +    + ++  LV+   L    + +G++     +  ++     F
Sbjct: 64  SQYGDKYMDDPQVAQQILQQRQSVVQGLVTDKVLGIEADKLGIKPSEEEIKKKV--DEQF 121

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
                    D F   L  EG  E  + D     +    V    +                
Sbjct: 122 ENIKKGM-GDNFDKALEAEGYTEDTFKDVIKNQVINQAVQDYII---------------- 164

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
                                  ++    +++++ K  + A +   ++  L   +     
Sbjct: 165 ------------------KDVKVTDEDAQKYYDENKQQFVAKDSGVLTKHLLFEN----- 201

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
                +E Q  Y++ +    +                 ++ F   +  K        + K
Sbjct: 202 ----EEEAQKAYDEIQSGKTTF----------------NDLFTKYENNKS-------ENK 234

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI-KPSFTVSF 364
                +LG    E    V          K+G+ +  I   FGY I       +    + F
Sbjct: 235 KPIAENLGVVPAENSGLVQEFVDGLKPLKEGEISKPIKTQFGYHIIQAGATYEKGAQLPF 294

Query: 365 QEVKKDIANQMRITKASEKVKEDYKR 390
            +VK  I   ++  K SEK K D  +
Sbjct: 295 DDVKSQIIQILKQQKDSEKFKADMDQ 320


>gi|310829352|ref|YP_003961709.1| hypothetical protein ELI_3795 [Eubacterium limosum KIST612]
 gi|308741086|gb|ADO38746.1| hypothetical protein ELI_3795 [Eubacterium limosum KIST612]
          Length = 497

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 99/239 (41%), Gaps = 17/239 (7%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY---- 220
                +  +  L+   + +  E     +D  +   + +  +   ++  L Q+ E Y    
Sbjct: 226 SIFNSIAQNKALIKYCEEYNIEIKQEEIDNALQTKQSIQKMMFQTDDELNQYLENYFLTK 285

Query: 221 --KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
              D Y+  + + I+       +  + +++S+ +L+  Y+ +K+ Y      + E ++  
Sbjct: 286 EKYDEYQKEDARGIAAGQAIQAKVTEDVKVSDTDLRKYYKDHKDSY-DESTVSAEHILTE 344

Query: 279 NQKEADEAFQSLKK---GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSL 332
           ++  A+E +   K     + F ++  E   +        LG+F+KE +     +D+ F +
Sbjct: 345 DEALANEIYDKAKDVKTKEDFEKIMNEYKSNEKVKEATDLGAFNKEKMV-SEFSDAAFGM 403

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            K    +  +   +GY I +V +   +   SF++ K +I   ++  K +E   +  + L
Sbjct: 404 EKNS-VSKPVKTEYGYHIIYVYDKNDAGEASFEDKKDEITKAVKEEKGTEDYNKLKEDL 461


>gi|228939979|ref|ZP_04102553.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972874|ref|ZP_04133469.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979455|ref|ZP_04139787.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407]
 gi|228780273|gb|EEM28508.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407]
 gi|228786747|gb|EEM34731.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819591|gb|EEM65642.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 303

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 92/238 (38%), Gaps = 29/238 (12%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217
           S  ++V    G +  S+      + +  +N S  V   VLN+++     + +   L +  
Sbjct: 47  SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 105

Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +K  DN+         +  +  +    L    EK  K  ++  +++  Y+          
Sbjct: 106 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 156

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVS 324
              V  ++  ++K A E  + L  G+ F  LA++  +       G     F    +    
Sbjct: 157 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK-E 215

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             D+ + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +
Sbjct: 216 FEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 270


>gi|229151073|ref|ZP_04279281.1| Foldase protein prsA 1 [Bacillus cereus m1550]
 gi|228632384|gb|EEK89005.1| Foldase protein prsA 1 [Bacillus cereus m1550]
          Length = 303

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 92/238 (38%), Gaps = 29/238 (12%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217
           S  ++V    G +  S+      + +  +N S  V   VLN+++     + +   L +  
Sbjct: 47  SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 105

Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +K  DN+         +  +  +    L    EK  K  ++  +++  Y+          
Sbjct: 106 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 156

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVS 324
              V  ++  ++K A E  + L  G+ F  LA++  +       G     F    +    
Sbjct: 157 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK-E 215

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             D+ + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +
Sbjct: 216 FEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 270


>gi|229190961|ref|ZP_04317951.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876]
 gi|228592359|gb|EEK50188.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876]
          Length = 303

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 103/272 (37%), Gaps = 31/272 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217
           S  ++V    G +  S+      + +  +N S  V   VLN+++     + +   L +  
Sbjct: 47  SSDNIVTTKSGSISESDFNKKFKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 105

Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +K  DN+         +  +  +    L    EK  K  ++  +++  Y+          
Sbjct: 106 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 156

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVS 324
              V  ++  ++K A E  + L  G+ F  LA++  +       G     F    +    
Sbjct: 157 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK-E 215

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             D+ + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +  
Sbjct: 216 FEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD-- 270

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
            + ++++   L     +    +  K    +L 
Sbjct: 271 PQFHQQVTRELLKNADIKVSDKDLKDTFKELE 302


>gi|110803835|ref|YP_699739.1| peptidylprolyl isomerase [Clostridium perfringens SM101]
 gi|123047143|sp|Q0SQ68|PRSA_CLOPS RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|110684336|gb|ABG87706.1| putative foldase protein PrsA [Clostridium perfringens SM101]
          Length = 342

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/393 (13%), Positives = 122/393 (31%), Gaps = 87/393 (22%)

Query: 9   SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
            +  VA   + VL    +   + +   +    +TV +V  +K+      +  K     + 
Sbjct: 4   VKKIVASALVGVLMFSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFTQMK 63

Query: 69  QKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
            + G     +   +  +    + IL++LV    L        +      +  +I +    
Sbjct: 64  SQYGDKYMDDPQVAQQILQQRQGILNSLVEEKILVVEANKENIVPSEEELNKKIEQQIKL 123

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
           + +  ++  + +   +   G NE  + ++                       + D A   
Sbjct: 124 YKE--QYGEEGYKKAVESMGYNEDTFKEYLKNQ------------------FIADAAA-- 161

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
                          +       ++    +++++ K  +                     
Sbjct: 162 --------------SNASKDIKVTDEEAQKYYDENKKQFE-------------------- 187

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-----FIQLA 300
                                 +      L+F N++EA +A+  ++ GK      F +  
Sbjct: 188 -------------------VQAKGVLARHLLFENEEEAQKAYDEIQSGKTTFNDLFTKYE 228

Query: 301 EEQGKSLSDISLGSFSKEYIPDVS--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI-K 357
             + +  + I+      +    V+    + + SL K+G+ +  I   FGY I       +
Sbjct: 229 NNKLEKKTPIAESFVVPDENAQVAKEFVEGLKSL-KEGEISKPIKTQFGYHIIQAGATYE 287

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
               + F EVK  I   ++  K S+K+K D  +
Sbjct: 288 KGAQLPFNEVKSQIIQILKQQKDSQKLKSDMDQ 320


>gi|291482444|dbj|BAI83519.1| hypothetical protein BSNT_00126 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 297

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/381 (15%), Positives = 116/381 (30%), Gaps = 119/381 (31%)

Query: 13  VAKIFLVVLFVPFLIWGLS---DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           +  I L  L V  +    +       + S   ++ ++G + V    ++   + + G    
Sbjct: 6   IWTIILGALLVCCIAVAYTLTKSQTGASSSGESIATIGGKSVTREEWLKEMEDQYG---- 61

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
                            K  L+++++   ++Q  +   L+     V  E          +
Sbjct: 62  -----------------KSTLEDMINVRVVEQLAKKNNLKISKSEVDREFLLIKA---VN 101

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           N F  D        E   EKE+ D     +   +++                        
Sbjct: 102 NSFYED--------EHTTEKEWKDQIRYNILLEELL-----------------------T 130

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           R +D               SN  L  ++ K K+ Y+  +  RI                 
Sbjct: 131 RDIDI--------------SNKELESFYNKNKELYQFDDSYRI----------------- 159

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--- 306
                                    +V  +++EA E  + LK G  F  +A E+      
Sbjct: 160 -----------------------RHIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYT 196

Query: 307 -LSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                 LG  ++  + IP   + ++  +L +       I  + GY I  +     + T S
Sbjct: 197 SPYGGDLGFVTEASDNIPSAYIEEAK-TLKEDEWSQEPIKVNNGYAIIQLKEKLKARTFS 255

Query: 364 FQEVKKDIANQMRITKASEKV 384
           F EVK  I  Q+ + +  +K 
Sbjct: 256 FDEVKDQIRRQIAMDQLGDKA 276



 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 9/120 (7%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL--LFR 442
           +E+ + + + L  G+S + ++          P     G   +  +     Y E+   L  
Sbjct: 167 EEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKE 226

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                +P+         +  Y  +Q+KE + AR    +EV   +++     +  ++ + K
Sbjct: 227 DEWSQEPIK-------VNNGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLGDKATVK 279


>gi|269925897|ref|YP_003322520.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789557|gb|ACZ41698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 398

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 126/387 (32%), Gaps = 87/387 (22%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL----- 64
           R  ++ + + +L V  +I       +    S T+  VG +++  + +    K ++     
Sbjct: 32  RLIISVVAIALLIVVLIIAVPLIKQYLWEPSRTLAVVGNERIRKADYDQYVKMQVLGITD 91

Query: 65  ----------------GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
                               Q++   +NS    +  +D   LD +++   L+Q    +G+
Sbjct: 92  APESLASLYQVYKTDPESFPQRVKDAINSSMFSTSDVDAYTLDQMINNLVLNQTASKLGI 151

Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
                                                   +E      +++S   VVG  
Sbjct: 152 NISD------------------------------------QEVQAKIREIMS---VVGAS 172

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
                        A        +                P+ A L   ++    N+ +  
Sbjct: 173 ATPTSLPTTTTPSATSTPQAKSTPR------------ITPTAATLPSDYQ----NFVSSL 216

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            K     +           +    ++  Y + K    S E   V  ++   +++A+E  +
Sbjct: 217 QKSAGISMDMYASML----VRPALIRQRYLETKVP-KSAEQVHVRHILVSTKQQAEEVIK 271

Query: 289 SLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            L++GKKF  +A+E+       L    LG   +  I + S  D+ F+L K G  +P +  
Sbjct: 272 ELRQGKKFEVIAKEKSIDDQTKLKGGDLGWAPRG-IYEKSFEDAAFALTKVGQISPPVQT 330

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           S+G+ +  +   +    ++ +  ++ +
Sbjct: 331 SYGWHVIQLLGREKDRPLT-ETQRQQL 356


>gi|167753138|ref|ZP_02425265.1| hypothetical protein ALIPUT_01409 [Alistipes putredinis DSM 17216]
 gi|167659452|gb|EDS03582.1| hypothetical protein ALIPUT_01409 [Alistipes putredinis DSM 17216]
          Length = 678

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 94/703 (13%), Positives = 218/703 (31%), Gaps = 119/703 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L  +R      V  I +    + F++  L   +        V  +   K+ +S +I  + 
Sbjct: 4   LNTLRTRF-GVVLSIIIAFALLAFILS-LKTDMGLSGNDPKVGVIDGSKIRYSEYIEVYN 61

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                       +  S   +   L +     L++        E +G+        G I+ 
Sbjct: 62  NLKDQ-----SNISESNEEQMDQLAEMAWQTLIANHVYLPGFEKMGISVTDAEREGLISG 116

Query: 122 S-------PLFHGK-DNKFSHDVFVSRLAREGINEK-EYI--DHYTKMLSRTDVV---GM 167
                     F      ++S +     +A+   N + +Y+      + +   ++    G+
Sbjct: 117 EYYSGTMAAAFTDPRTGQYSVEGVSDFIAQATGNPQMQYMWGALVGQAMREREINKYNGL 176

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRA 226
             GG+  + L  ++      +  S  ++      +P      S++ +  ++  +K  Y  
Sbjct: 177 VKGGVYVNRLEAEEGVDAQNKTFSGSWVGKRYHDMPDSLFSVSDSEIKAYYNSHKARYEQ 236

Query: 227 PEYKRISYILFDVHEKEKKIEISN-------------DELQAEYEKNKEKYFSPEIRTVE 273
              + +SY++F+V    + +                 D+ +A  + N+    +   R+V 
Sbjct: 237 KPSRTLSYVVFEVAPSAEDMATLEKTVREVGDEFAASDDPKAFAKNNRFGKITDNYRSVA 296

Query: 274 QLV---------------------------------------------FPNQKEADEAFQ 288
           QL+                                             +  +  AD    
Sbjct: 297 QLLDDEAEALANGKQYGPVLKNDTWTMTRVVETLNAPDSVGVRHIVLTYDQRDLADSLMT 356

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL---AKKGDFTPVIHGS 345
           +L++G  F Q A      + D   G  +   +P  +  D +  L   AK+GD   V  G 
Sbjct: 357 ALRQGADFAQAARTHSLYMQDAGNGGDA-GVMPFSAFPDELSGLLSTAKQGDILRVEVGD 415

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG--TSMDE 403
               +  +  +      S       I   +  + A+ +       L      G   + +E
Sbjct: 416 ----VIQILQVYRLDKPSKHMRLATITYPVEASSATRRNVHSQASLFSVEGKGSVDAFNE 471

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
            + +  +   +  L          + +  +    +L+   +  D  +     +      Y
Sbjct: 472 AANKGNLTPREAKLTQ------GDRLLQGLADSRELVRWAY--DAKVGAISEIFPVGDDY 523

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
           +   + E        +E+V  ++++   T K       K  ++V E   +G    ++ +N
Sbjct: 524 VVAVVTEIDNEDYTPIEKVANNIRQTLITDK-------KFEKIVSEM--KGSTIEEVAQN 574

Query: 524 LGASLLTTNQIN--RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
           LG  ++    +        N       I  + +         P++  +   VF VT+ + 
Sbjct: 575 LGTEVVPFEDVRYGSFFIRNMGVEPRVIGAITATEQTNTLSEPVKGNVGAYVFVVTDIQE 634

Query: 582 GPVQE--------KDKFISYLTQMMNKDLLDSV--IAYLKSQY 614
               +         +     + Q    D L+ +  +  L+ +Y
Sbjct: 635 AETPQSIEAEKVRAEASSQGMIQRRLFDFLEQMSNVEDLRGKY 677


>gi|163737941|ref|ZP_02145357.1| preprotein translocase ATPase subunit [Phaeobacter gallaeciensis
           BS107]
 gi|161388557|gb|EDQ12910.1| preprotein translocase ATPase subunit [Phaeobacter gallaeciensis
           BS107]
          Length = 283

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 65/159 (40%), Gaps = 5/159 (3%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           S+++L+  Y++        +      ++   +++A +    L  G  F  LA E+    S
Sbjct: 117 SDEDLRTAYDEKYTDGTGGDEFNASHILVETEEDAADIRAELDAGADFATLARERSTGPS 176

Query: 309 D---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 LG FSK  +      +++  +   GD +  +   FG+ +  +++ + S   +F 
Sbjct: 177 GPNGGELGWFSKGRMV-PQFEEAVLVMG-AGDVSDPVQTQFGWHVIKLNDRRTSAAPTFD 234

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
           EV++++A QMR     ++V                +D  
Sbjct: 235 EVREELATQMRQEAVEDRVLSLTTAATIERPEIEDLDPA 273


>gi|218129785|ref|ZP_03458589.1| hypothetical protein BACEGG_01364 [Bacteroides eggerthii DSM 20697]
 gi|317475868|ref|ZP_07935125.1| peptidyl-prolyl cis-trans isomerase [Bacteroides eggerthii
           1_2_48FAA]
 gi|217987895|gb|EEC54220.1| hypothetical protein BACEGG_01364 [Bacteroides eggerthii DSM 20697]
 gi|316908028|gb|EFV29725.1| peptidyl-prolyl cis-trans isomerase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 712

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 89/733 (12%), Positives = 201/733 (27%), Gaps = 138/733 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     S  V  V  + +    F    +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETISAQDFQALVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   ++    G    S+  ++  +  ++    V+   ++   E +GL      +   I  
Sbjct: 61  EYTEVVKFSSGMNALSDE-QTNQIKDEVWRAYVNNKLIENEAEKLGLTVSKAELQAIIDA 119

Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHYTKML-------- 159
                 +   F       F  D+    L       +  +   +Y ++Y  M         
Sbjct: 120 GAHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQM-PAQYAEYYESMYNFWAFVEK 178

Query: 160 ------SRTDVVGMFVGGMRPSNLLLD--------------------------------- 180
                  +     +    +  + +  +                                 
Sbjct: 179 SLIQARLQEKYQALITKSLFSNPVEAEDAFNARVDQSDLLLAAVPYSSIVDSTIVIKESD 238

Query: 181 ---------QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK------YKDNYR 225
                    +  R Y E R++ YI +     P         + ++  +         N+ 
Sbjct: 239 LKEAYDKKKEQFRQYVETRNIKYIDVQVTASPEDKADIQKEVEEYTAQLGETSSDYANFI 298

Query: 226 APEYKRISYILFDVHEKEKKIEI-------------------SNDELQAEYEKNKEKYFS 266
                   Y      +K    ++                   S++ + +   K       
Sbjct: 299 RSTGSTQQYTDLYYTDKALPADVVARLDSVKVGEVYGPYYNASDNTINSF--KKLATAAM 356

Query: 267 PEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318
            +     Q+      +A      D  + ++K G  F ++A++ G++   + IS  ++   
Sbjct: 357 ADSIQFRQIQITAGDDAKTKTLADSVYNAIKGGADFAEIAKKYGQTGEPTWISSANYEGA 416

Query: 319 YIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
            I   +L    ++ SL +  +   +  G    VI  V + K         VK      + 
Sbjct: 417 QIDGDNLKYIAAVTSLGQN-ELANLALGQAN-VILQVMSKKA--------VKDKYKVAVI 466

Query: 377 I---TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
                 + E   + Y    +F+A   ++++++   +     L  +D          +  +
Sbjct: 467 KRPVEFSKETYSKAYNDFSQFIAANNTLEKLAANAEDAGYRL--LDRTDLYSSEHAIGGV 524

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
              ++ L   F                   M V +    P   R L  V   ++ +    
Sbjct: 525 KGTKEALRWAFTAKAGEVSGLYECGESDHMMVVAVTGIAPEGYRPLSMVKEQLRSEILRD 584

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRD----IGKNLGASLLTTNQINRMDNENKFFGYDGI 549
           K       KA +++ +    G    D    +   +  S+                    +
Sbjct: 585 K-------KAEKIMADMKAAGATSFDQYKNMANAVSDSVKHVTFAAPAYVPVLRSSEPLV 637

Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
               S         PI+      V +    +        K      + M+  +    I  
Sbjct: 638 GAYASTAELNKLSAPIKGNGGVFVLQPYAKEKLSETYDQKTEETTLENMHARMAGQFIND 697

Query: 610 LKSQYSVTVHDNL 622
           L  +  V  +  L
Sbjct: 698 LYLKAEVKDNRYL 710


>gi|229046560|ref|ZP_04192211.1| Foldase protein prsA 1 [Bacillus cereus AH676]
 gi|228724735|gb|EEL76041.1| Foldase protein prsA 1 [Bacillus cereus AH676]
          Length = 303

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 100/274 (36%), Gaps = 35/274 (12%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV----LTQ 215
           S  ++V    G +  S+      + +  +N S    ++  + +      ++      L +
Sbjct: 47  SSDNIVTTKSGSISESDFNKKLKENYGKQNLS---EMVVEKVLHDKYKVTDEEVTKQLKE 103

Query: 216 WFEKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
             +K  DN+         +  +  +    L    EK  K  ++  +++  Y+        
Sbjct: 104 LKDKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK-------- 155

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPD 322
                V  ++  ++K A E  + L  G+ F  LA++  +       G     F    +  
Sbjct: 156 -PKLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK 214

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
               D+ + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +
Sbjct: 215 -EFEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 270

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
              + ++++   L     +    +  K    +L 
Sbjct: 271 --PQFHQQVTRELLKNADIKVSDKDLKDTFKELE 302


>gi|154148381|ref|YP_001406634.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
 gi|153804390|gb|ABS51397.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
          Length = 275

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 11/162 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293
             + KK+ +S+DE +  YE+N   +  PE  +   ++   +KEA      L K       
Sbjct: 100 DNEFKKVNVSDDEAKKFYEENNASFVIPEQISASHILVKEEKEAKNIISKLSKLKGEKLS 159

Query: 294 KKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           K+F ++A E+    G   +  +LG F K  + +     ++F L K       +   FGY 
Sbjct: 160 KEFAKIASEKSIDNGTKQNGGALGFFQKGQMVEP-FEKAVFGLKKGELTKQPVKTQFGYH 218

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           I   ++ K + T+ F+ VK  I N ++  K  +++ E  + L
Sbjct: 219 IILKTDEKKASTLPFESVKNAIINNIKGQKFQKQIDEKAEAL 260



 Score = 38.4 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 88/271 (32%), Gaps = 32/271 (11%)

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           DV      I+I+++++    E+N           +  +   ++++       +K    + 
Sbjct: 20  DVLATAGDIKITDEDITPFLEQN----------HMNGIDINDEQKKALLENLIK----YK 65

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            L +E   S  +  L    +    D++     F L +  +F  V          +     
Sbjct: 66  LLVKEAKNSGVENELEYKKR---LDIAADGIAFGLWQDNEFKKVNVSDDEAKKFY-EENN 121

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL--GTSMDEISRREKIVSIDL 415
            SF +      + I+    + K  ++ K    +L +           +I+  + I +   
Sbjct: 122 ASFVIP-----EQISASHILVKEEKEAKNIISKLSKLKGEKLSKEFAKIASEKSIDNGTK 176

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
                 G   KG+ V      E     VFG          V    G ++ ++  E   A 
Sbjct: 177 QNGGALGFFQKGQMV------EPFEKAVFGLKKGELTKQPVKTQFGYHIILKTDE-KKAS 229

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
               E V   +  + K  K  +++  KA  L
Sbjct: 230 TLPFESVKNAIINNIKGQKFQKQIDEKAEAL 260


>gi|86747655|ref|YP_484151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris HaA2]
 gi|86570683|gb|ABD05240.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris HaA2]
          Length = 306

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 71/168 (42%), Gaps = 5/168 (2%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E+ R   ++ D+   E K   +++ ++  YE   ++    +      ++   + EA    
Sbjct: 110 EFARNRLLMDDLLGVEGKAATTDEAMKKVYEDAAKQISGEQEVHARHILVETEDEAKAIA 169

Query: 288 QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           + LKKG  F +LA+++ K         LG F+K+ +     +   F+L + G  +  +  
Sbjct: 170 EELKKGADFAELAKKKSKDPGASDGGDLGFFTKDQMV-PEFSAVAFAL-EPGKISDPVKS 227

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            FG+ I  V   +     +F +VK  I   +     S+ V +  +  +
Sbjct: 228 QFGWHIIKVEEKRNRKPPTFDQVKPQIEQYVTRKAQSDYVTQLRQAAK 275



 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 46/134 (34%), Gaps = 6/134 (4%)

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
            +V      V+T +E  + A +L     K+G +F ++ K        ++  +        
Sbjct: 150 QEVHARHILVETEDEAKAIAEEL-----KKGADFAELAKKKSKDPGASDGGDLGFFTKDQ 204

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603
              +  +  F+     +   P+++   + + KV   +       D+    + Q + +   
Sbjct: 205 MVPEFSAVAFALEPGKI-SDPVKSQFGWHIIKVEEKRNRKPPTFDQVKPQIEQYVTRKAQ 263

Query: 604 DSVIAYLKSQYSVT 617
              +  L+    V 
Sbjct: 264 SDYVTQLRQAAKVE 277


>gi|228959094|ref|ZP_04120794.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229145438|ref|ZP_04273824.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24]
 gi|228638014|gb|EEK94458.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24]
 gi|228800603|gb|EEM47520.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 303

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 89/240 (37%), Gaps = 33/240 (13%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV----LTQ 215
           S  ++V    G +  S+      + +  +N S    ++  + +      ++      L +
Sbjct: 47  SSDNIVTTKSGSISESDFNKKLKENYGKQNLS---EMVVEKVLHDKYKVTDEEVTKQLKE 103

Query: 216 WFEKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
             +K  DN+         +  +  +    L    EK  K  ++  +++  Y+        
Sbjct: 104 LKDKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK-------- 155

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPD 322
                V  ++  ++K A E  + L  G+ F  LA++  +       G     F    +  
Sbjct: 156 -PKLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK 214

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
               D+ + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +
Sbjct: 215 -EFEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 270


>gi|121602142|ref|YP_988681.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Bartonella bacilliformis KC583]
 gi|120614319|gb|ABM44920.1| PPIC-type PPIASE domain protein [Bartonella bacilliformis KC583]
          Length = 315

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 67/150 (44%), Gaps = 6/150 (4%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           +I++ +L+  Y+K        +      ++   +KEA    + LKKG+ F ++A++    
Sbjct: 137 KITDGDLKILYDKEVAALPKEDEVKARHILVKTKKEAQAIIKRLKKGENFEEIAKKDSTD 196

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTV 362
            S      LG FS   +      D+ FSL K G++T   +   FG+ I  V + +     
Sbjct: 197 GSAAVGGDLGYFSYGQMVKP-FEDAAFSL-KVGEYTKNPVESPFGWHIIKVEDRRLKQPP 254

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            F + K+ +  Q+   +  + + +   +++
Sbjct: 255 EFDDAKEVLRAQIIKDRYQQLIADLRSKID 284



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 5/134 (3%)

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
            +VK     VKT +E  +     +++  K+G+NF +I K            +        
Sbjct: 158 DEVKARHILVKTKKEAQA-----IIKRLKKGENFEEIAKKDSTDGSAAVGGDLGYFSYGQ 212

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603
                    FS  V      P+E+   + + KV + ++    E D     L   + KD  
Sbjct: 213 MVKPFEDAAFSLKVGEYTKNPVESPFGWHIIKVEDRRLKQPPEFDDAKEVLRAQIIKDRY 272

Query: 604 DSVIAYLKSQYSVT 617
             +IA L+S+  V 
Sbjct: 273 QQLIADLRSKIDVK 286


>gi|27904901|ref|NP_778027.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46396883|sp|Q89A98|PPID_BUCBP RecName: Full=Putative peptidyl-prolyl cis-trans isomerase D;
           Short=PPIase D; AltName: Full=Rotamase D
 gi|27904299|gb|AAO27132.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 511

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 100/254 (39%), Gaps = 13/254 (5%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV--NSERARSV-GLDKKILDNLVSG 96
           S   + +   ++    FI  +  E     +     +  N +  + +  +    L N++  
Sbjct: 38  SEYEIKINNTEISREEFIQRYNLECFYNDKNFKNDIITNPKNPKYISEIYNITLSNIIYE 97

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
           + L Q++  +    D+  V   I +  +F  ++ KF+ + +   L +  I+  EYI    
Sbjct: 98  SLLQQYVHQLHFNIDYSHVKNYIYKQTIFR-QNQKFNKEKYYEYLKKLQISSNEYIKKVM 156

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L   + +          N   +   + + + R V+   +N  ++  I   SN  L ++
Sbjct: 157 TYLEIKEFIKTLTNTDFILNNEKNNILKLFEQGRIVNKSYVNLNNLKLIEHISNKELKRY 216

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +  +K  + +P+  +ISY L + +            ++  Y KNK+  F  E+    +  
Sbjct: 217 YINHKHQFLSPKKFKISYFLINKNNVFVPC------IKKFYFKNKDNTFQHELFLQHK-- 268

Query: 277 FPNQKEADEAFQSL 290
             ++K+ D   + L
Sbjct: 269 -KSKKQNDNIIKKL 281


>gi|149912930|ref|ZP_01901464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           AzwK-3b]
 gi|149813336|gb|EDM73162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           AzwK-3b]
          Length = 285

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 7/161 (4%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           ++ ++QA YE+               ++   ++ A +    L+ G  F  LA E     S
Sbjct: 119 TDADIQAAYEERYASAGQETEYKAAHILVETEETARDLIAQLEGGADFATLARENSTGPS 178

Query: 309 D---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 LG F    + + S  +++ SL + G  +  +   FG+ +  ++  + + T   +
Sbjct: 179 GPNGGDLGWFGPGVMVE-SFFNAVASL-EPGQVSEPVQTQFGWHVIKLNETRLTETPPLE 236

Query: 366 EVKKDIANQMRITKASEKVKEDYKR--LEEFLALGTSMDEI 404
           EV+ +I   ++  K    V     +  +E   A G + + I
Sbjct: 237 EVRAEIEETLQQEKFDAHVDTLTDQATIERSDASGIAPETI 277



 Score = 37.3 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 52/159 (32%), Gaps = 11/159 (6%)

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           +I+ ++   +    ++   + +      + +E  + L   L  G     ++R        
Sbjct: 122 DIQAAYEERYASAGQE--TEYKAAHILVETEETARDLIAQLEGGADFATLAREN------ 173

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
                 +G +             +  F      +P      V    G +  +++ E+   
Sbjct: 174 --STGPSGPNGGDLGWFGPGVMVESFFNAVASLEPGQVSEPVQTQFG-WHVIKLNETRLT 230

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
               LEEV  ++++  +  K    V +  +Q  +E S  
Sbjct: 231 ETPPLEEVRAEIEETLQQEKFDAHVDTLTDQATIERSDA 269


>gi|229030040|ref|ZP_04186105.1| Foldase protein prsA 1 [Bacillus cereus AH1271]
 gi|228731301|gb|EEL82218.1| Foldase protein prsA 1 [Bacillus cereus AH1271]
          Length = 288

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 86/224 (38%), Gaps = 12/224 (5%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYK----DNYR-APEYKRISYILFDVHEKEKKIEI 248
           Y ++ ++ +      S+    +  E+ K    DN++   E   +        + + +I  
Sbjct: 60  YQMVLSKALLDKYKVSDEEAKKQVEEAKEKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 119

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
                +   EK+ ++ + PE++ V  ++  ++K A E  + +  G+ F  LA++  +   
Sbjct: 120 EKAIKETVTEKDVKENYKPEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTG 178

Query: 309 DISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
               G     + P        ++ F L   G  +  +  ++GY I  V++ K      F 
Sbjct: 179 SKEQGGEITGFAPGQTVKEFEEAAFKL-DAGQVSEPVKTTYGYHIIKVTDKKE--LKPFD 235

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 236 EVKDQIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEFK 279



 Score = 43.8 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 54/148 (36%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK++   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 131 DVKENYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 190

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V      ++     F  D     +         Y  +++ +      +  +EV   
Sbjct: 191 PGQTV------KEFEEAAFKLDAGQVSEPVKTTY--GYHIIKVTDKKE--LKPFDEVKDQ 240

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V +  K+
Sbjct: 241 IRKDLEQQRLQDTTGKWKQQVVNDLLKD 268



 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPV 557
            K  + V E    G++F  + K       +  Q   I           ++     F    
Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFE--EAAFKLDA 207

Query: 558 EMVKCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLK 611
             V   P++    Y + KVT+ K + P  E KD+    L Q   +D        V+  L 
Sbjct: 208 GQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDQIRKDLEQQRLQDTTGKWKQQVVNDLL 266

Query: 612 SQYSVTVHDN 621
               + V+D 
Sbjct: 267 KDADIKVNDK 276


>gi|329956951|ref|ZP_08297519.1| hypothetical protein HMPREF9445_02394 [Bacteroides clarus YIT
           12056]
 gi|328523708|gb|EGF50800.1| hypothetical protein HMPREF9445_02394 [Bacteroides clarus YIT
           12056]
          Length = 712

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 97/732 (13%), Positives = 209/732 (28%), Gaps = 136/732 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     S  V  V  + +    F    +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETISAQDFQALVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   ++    G    S+  ++  +  ++    V+   ++   E +GL      +   I  
Sbjct: 61  EYTEVVKFSSGLNALSDE-QTNQIKDEVWRAYVNNKLIENEAEKLGLTVSKAELQAIIDA 119

Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHY----------TK 157
                 +   F       F  D+    L       +  +   +Y ++Y           K
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQM-PAQYAEYYNSMYNFWAFVEK 178

Query: 158 MLSRTDVVG-------------------MFVGGMRPSNLLL------------------- 179
            L +  +                      F   +  S+LLL                   
Sbjct: 179 SLVQARLQEKYQALITKSLFSNPVEAEDAFNARVDQSDLLLAAVPYSSIVDSTIVIKESD 238

Query: 180 --------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW---FEKYKDNYR--- 225
                    +  R Y E R++ YI +     P         + ++     +   +Y    
Sbjct: 239 LKDAYDKKKEQFRQYVETRNIKYIDVQVTASPEDKADIQKEVEEYTAQLAENPSDYANFV 298

Query: 226 -----APEYKRISYI----LFDVHEKEKKIEI----------SNDELQAEYEKNKEKYFS 266
                  +Y  + Y       DV  +   +++          S++ + +   K       
Sbjct: 299 RSTGSTQQYVDLFYTDKALPADVVARLDSVKVGGVYGPYYNASDNTINSF--KKLATAAM 356

Query: 267 PEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318
            +     Q+    +  A      D  + ++K G  F ++A++ G++   + IS  ++   
Sbjct: 357 ADSIQYRQIQVVAEDAAKTKTLADSIYTAIKGGADFAEIAKKYGQTGEATWISSANYEGA 416

Query: 319 YIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
            +   +L   +  +   + + T +  G    VI  V N K         VK      +  
Sbjct: 417 QVDGDNLKYIAAITTLGQNELTNLALGQAN-VILQVMNKKA--------VKDKYKVAVIK 467

Query: 378 ---TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
                + E   + Y    +F+A   ++D+++   +     L  +D A        +  + 
Sbjct: 468 RPVEFSKETYSKAYNDFSQFIATNNTLDKLTANAEDAGYRL--LDRADLYSSEHNIGGVK 525

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
             ++ L   F                   M V +   +P   R L  V   ++ +    K
Sbjct: 526 GTKEALKWAFAAKAGEVSGLYECGESDHMMVVAVTRIVPEGYRPLSMVQDQLRSEILRDK 585

Query: 495 TAEEVSSKANQLVLEYSKEGKNFRD----IGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
                  KA +++ +    G    D    +   +  S+                    + 
Sbjct: 586 -------KAEKIMADMKAAGATSFDQYKNMANAVSDSVKHVTFAAPAYVPALRSSEPLVG 638

Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
              S         PI+      V +             +      + M+  +    I  L
Sbjct: 639 AYASIAELNKLSTPIKGNGGVFVLQPYAKDKLNETYNQETEEATLENMHARMASQFINDL 698

Query: 611 KSQYSVTVHDNL 622
                V  +  L
Sbjct: 699 YLNADVKDNRYL 710


>gi|171060558|ref|YP_001792907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
 gi|170778003|gb|ACB36142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
          Length = 336

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 127/379 (33%), Gaps = 77/379 (20%)

Query: 22  FVPFLIWGLSDALFSVSGSSTV--VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
            +  L+ G++      + + +V    V    +P       ++  L    ++I        
Sbjct: 20  LLTALVMGVASLSSGPALAQSVFAARVNGVGIPAQRLERQFEALLR--ERQIHIARLQNP 77

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS-PLFHGKDNKFSHDVFV 138
           AR+  L ++ LD L+    L Q    +GLEAD   V   I  +   F         +VF 
Sbjct: 78  ARARELRREALDRLIGIELLGQQARALGLEADDAAVERAITEARSRFRSA------EVFA 131

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
            R+A EG +E  + +H  K+LS   +                         R VD     
Sbjct: 132 QRIAIEGHDEASHREHTRKLLSGERLA-----------------------QRIVDR---- 164

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
                     + A +  + E     +R PE  R+  +L  +    +              
Sbjct: 165 ------EVHITEADIAAFHEANPALFRRPEQVRVRQLLVALPADAEPA------------ 206

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSF 315
                           L    +   +      + G+ F  LA     + +     +L  F
Sbjct: 207 ----------------LKAQARSRIEALLVRARAGESFEALARTHSDAPTRQWGGALDPF 250

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            +   P  ++ D+ F+LA  G  + VI  S G+ I  +     + +V   EV++ I   +
Sbjct: 251 GRGSQP-RAIEDAAFALA-PGALSEVIETSAGWQILQLDERIAAVSVPLDEVRERIRRHL 308

Query: 376 RITKASEKVKEDYKRLEEF 394
              +  + V+ +  RL E 
Sbjct: 309 HDGRGQQAVEREIARLREQ 327


>gi|163792785|ref|ZP_02186762.1| hypothetical protein BAL199_18098 [alpha proteobacterium BAL199]
 gi|159182490|gb|EDP66999.1| hypothetical protein BAL199_18098 [alpha proteobacterium BAL199]
          Length = 329

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 58/142 (40%), Gaps = 4/142 (2%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
            +++ D L+  Y+    +    E      ++   + +A      L KG  F  LA+E+  
Sbjct: 166 AQVTEDALRERYKTFAAEQSGREEAHASHILLDTEDQAKAVIADLDKGGDFAALAKERST 225

Query: 306 SLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
             +      LG FS E +     + + F+L         +   FG+ +  +   + +   
Sbjct: 226 DPAGAEGGDLGWFSAEQMV-PEFSQAAFALTPGTYSKEPVKSQFGWHVIKLVEKRTTEAP 284

Query: 363 SFQEVKKDIANQMRITKASEKV 384
           +F++V+  +A+++     + K+
Sbjct: 285 AFEQVRDQLASELSRELITAKL 306


>gi|228953196|ref|ZP_04115250.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228806423|gb|EEM52988.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 303

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 103/272 (37%), Gaps = 31/272 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217
           S  ++V    G +  S+      + +  +N S  V   VLN+++     + +   L +  
Sbjct: 47  SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 105

Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +K  DN+         +  +  +    L    EK  K  ++  +++  Y+          
Sbjct: 106 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 156

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVS 324
              V  ++  ++K A E  + L  G+ F  +A++  +       G     F    +    
Sbjct: 157 KLQVSHILVKDEKTAKEIKEKLNSGEDFAAVAKQYSEDPGSKEKGGELSEFGPGMMVK-E 215

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             D+ + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +  
Sbjct: 216 FEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD-- 270

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
            + ++++   L     +    +  K    +L 
Sbjct: 271 PQFHQQVTRELLKNADIKVSDKDLKDTFKELE 302


>gi|229128201|ref|ZP_04257182.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4]
 gi|228655060|gb|EEL10917.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4]
          Length = 303

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 91/240 (37%), Gaps = 33/240 (13%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           S  ++V    G +  S+      + +  +N S    ++  + +      ++  +T+  E+
Sbjct: 47  SSDNIVTTKSGSISESDFNKKLKENYGKQNLS---EMVVEKVLHDKYKVTDEEVTKQLEE 103

Query: 220 YKD----NY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
            KD    N+         +  +  +    L    EK  K  ++  +++  Y+        
Sbjct: 104 LKDKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK-------- 155

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPD 322
                V  ++  ++K A E  + L  G+ F  LA++  +       G     F    +  
Sbjct: 156 -PKLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK 214

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
               D+ + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +
Sbjct: 215 -EFEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 270


>gi|288573832|ref|ZP_06392189.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569573|gb|EFC91130.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 297

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 84/206 (40%), Gaps = 20/206 (9%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           EKYK+     E + ++ +     +     ++S++E++  Y+ +K  +  PE      ++ 
Sbjct: 91  EKYKETMAELEKRVLAGMAM--EKVLSGAKVSDEEVKKFYDDHKAAFEVPESVKASHILI 148

Query: 278 ------------PNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIP 321
                         +KEA +  + +  GK  F   A+      S      LG F++  + 
Sbjct: 149 QVSKDAGNDLWKKAKKEATKIRKDILAGKVSFEDAAKRDSDCPSKSRGGDLGFFTEGQMV 208

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                 + F+  K GD +  +   FGY I  V++ K +    F EVK  I  Q+   K  
Sbjct: 209 -PEFEKAAFA-TKIGDISDPVKTQFGYHIIKVTDHKDASEQPFDEVKDGIRQQLLQQKQR 266

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRR 407
           + + E   +L++   +   + E+ + 
Sbjct: 267 DTLSEYVDKLKKTYKVEILLPELKKA 292



 Score = 40.4 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 65/195 (33%), Gaps = 16/195 (8%)

Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
           K V A    E++L      D+ + K +     D      ++ ES+ A    ++       
Sbjct: 102 KRVLAGMAMEKVLSGAKVSDEEVKKFY-----DDHKAAFEVPESVKASHILIQVSKDAGN 156

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
             WK      +   +A ++  +      +F D  K        +   +           +
Sbjct: 157 DLWK------KAKKEATKIRKDILAGKVSFEDAAKRDSDCPSKSRGGDLGFFTEGQMVPE 210

Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK----DLL 603
                F+  +  +   P++    Y + KVT+ K    Q  D+    + Q + +    D L
Sbjct: 211 FEKAAFATKIGDI-SDPVKTQFGYHIIKVTDHKDASEQPFDEVKDGIRQQLLQQKQRDTL 269

Query: 604 DSVIAYLKSQYSVTV 618
              +  LK  Y V +
Sbjct: 270 SEYVDKLKKTYKVEI 284


>gi|182414379|ref|YP_001819445.1| hypothetical protein Oter_2563 [Opitutus terrae PB90-1]
 gi|177841593|gb|ACB75845.1| hypothetical protein Oter_2563 [Opitutus terrae PB90-1]
          Length = 553

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 66/493 (13%), Positives = 145/493 (29%), Gaps = 62/493 (12%)

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE-ADHGRVWGEIARSPLFHGK 128
           ++G+ V+    +               A   Q  E + L  A    +   I    +F G 
Sbjct: 74  QMGYPVDGAELQDYAF---------QRAASLQLAEQLHLPPATQQEITDAIKSLRIFAGA 124

Query: 129 DNKFSHDVF---VSRLARE--GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
           D +F    +      L     G NE       +  +    V  +  G        +    
Sbjct: 125 DGQFDAQRYATFRDSLKSNRAGFNEASVTRVLSDDVRINKVQRLIAGPGYVLPAEVRMQL 184

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
                + ++    ++          ++ +LT+++E+    Y  P    + Y  F +    
Sbjct: 185 EQADASWTLGVATIDYAGFNPTIPATDELLTKFYEENAFRYEIPPRVVVDYAEFSLQAIL 244

Query: 244 KKIEISNDELQAEYEKNKEKYFSP--------------EIRTVEQLVFPNQKEADEAFQS 289
             I+++  E++A Y+ N  ++  P              +   V   V    K+      +
Sbjct: 245 PTIQVTEAEVRAFYDANPARFPKPAADAKAPAKTDPAVDYAAVRPQVEAALKQERARRIA 304

Query: 290 LKKGKKFIQLAEEQGKSLSD--------------ISLGSFSKEYIPD-----VSLADSIF 330
            K    F     E+                     SL  F++E  P        +A   F
Sbjct: 305 AKNASDFAYSLFEKKLKPGIPEFTSYLAAQGITLKSLAPFTREAGPAEFGGSQEIAGEAF 364

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED--- 387
            L      +  +    G V+    +++PS   +F EV++ +    R ++  ++  E    
Sbjct: 365 KLGPNHRISDALTAPTGSVVLFWQDLQPSRKPAFVEVREQVLADYRESEKRKRFVELGRT 424

Query: 388 -YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
               +E  +  G +  +        +             + +    + Y    ++    +
Sbjct: 425 IRSAIESRVKAGANFTDAVAAAASANTVKIEAKMLAPFTRRQPPQDLDYT---VYGALER 481

Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE---EVSSKA 503
            D       +   +   +     + +P       E           +  A      S+  
Sbjct: 482 LDKGQVLDMMIAREHGLIVYAADKKVPEA----SEANPQFAAARTQLAMATGRVGASAYL 537

Query: 504 NQLVLEYSKEGKN 516
           N++V E  K+ + 
Sbjct: 538 NEVVTEELKKSEP 550


>gi|16077140|ref|NP_387953.1| protein secretion PrsA [Bacillus subtilis subsp. subtilis str. 168]
 gi|221307882|ref|ZP_03589729.1| hypothetical protein Bsubs1_00365 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312204|ref|ZP_03594009.1| hypothetical protein BsubsN3_00365 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317137|ref|ZP_03598431.1| hypothetical protein BsubsJ_00365 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321400|ref|ZP_03602694.1| hypothetical protein BsubsS_00365 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|586895|sp|P37566|YACD_BACSU RecName: Full=Uncharacterized protein yacD
 gi|467461|dbj|BAA05307.1| unknown [Bacillus subtilis]
 gi|2632339|emb|CAB11848.1| putative protein secretion PrsA homolog [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 297

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 62/381 (16%), Positives = 116/381 (30%), Gaps = 119/381 (31%)

Query: 13  VAKIFLVVLFVPFLIWGLS---DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           +  I L  L V  +    +       + S   ++ ++G + V    ++   + + G    
Sbjct: 6   IWTIILGALLVCCIAVAYTLTKSQAGASSSGESIATIGGKSVTREEWLKEMEDQYG---- 61

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
                            K  L+++++   ++Q  +   L+     V  E          +
Sbjct: 62  -----------------KSTLEDMINVRVVEQLAKKNKLKISKSEVDREFLLIKA---VN 101

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           N F  D        E   EKE+ D     +   D++                        
Sbjct: 102 NSFYED--------EHTTEKEWKDQIRYNILLEDLL-----------------------T 130

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           R +D               SN  L  ++ K K+ Y+  +  RI                 
Sbjct: 131 RDIDI--------------SNKELESFYNKNKELYQFDDSYRI----------------- 159

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--- 306
                                    +V  +++EA E  + LK G  F  +A E+      
Sbjct: 160 -----------------------RHIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYT 196

Query: 307 -LSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                 LG  ++  + IP   + ++  +L +       I  S GY I  +     + T S
Sbjct: 197 SPYGGDLGFVTEASDNIPSAYIEEAK-TLKEDEWSQEPIKVSNGYAIIQLKEKLKARTFS 255

Query: 364 FQEVKKDIANQMRITKASEKV 384
           F EVK  I  Q+ + +  +K 
Sbjct: 256 FDEVKDQIRRQIAMDQLGDKA 276



 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 9/120 (7%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL--LFR 442
           +E+ + + + L  G+S + ++          P     G   +  +     Y E+   L  
Sbjct: 167 EEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKE 226

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                +P+            Y  +Q+KE + AR    +EV   +++     +  ++ + K
Sbjct: 227 DEWSQEPIKVS-------NGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLGDKATVK 279


>gi|228908608|ref|ZP_04072446.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200]
 gi|228851024|gb|EEM95840.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200]
          Length = 303

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 92/238 (38%), Gaps = 29/238 (12%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217
           S  ++V    G +  S+      + +  +N S  V   VLN+++     + +   L +  
Sbjct: 47  SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEIT-KQLKELK 105

Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +K  DN+         +  +  +    L    EK  K  ++  +++  Y+          
Sbjct: 106 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKNHYK---------P 156

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVS 324
              V  ++  ++K A E  + L  G+ F  LA++  +       G     F    +    
Sbjct: 157 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK-E 215

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             D+ + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +
Sbjct: 216 FEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 270


>gi|115375700|ref|ZP_01462954.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
 gi|115367263|gb|EAU66244.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
          Length = 204

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 5/176 (2%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
              RA E  R+       +    ++ ++ +EL+A Y  ++ ++  PE     QLV     
Sbjct: 4   AELRAREANRLIIEKLFTNHVYARVAVTEEELRAAYTAHEAEFQEPEQVHAAQLVVKGLD 63

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           EA      LK GKKF  LA     S        LG F +  +P     + +F+L + G  
Sbjct: 64  EARRVQAQLKAGKKFADLARRYSLSADAKVGGDLGFFPRGQMP-PVFDEVVFNL-RPGQV 121

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           + V+   +GY +  V   KP+    F EV+  +  +    K  E  +   K L + 
Sbjct: 122 SDVVSTEYGYHLFRVLEFKPARKRDFVEVRAKVEAREVKRKQEEAHEAFEKALLDK 177



 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 10/169 (5%)

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
            +  Y    V+  +     +  E +     Q+   +   K  ++ +R++  L  G    +
Sbjct: 21  TNHVYARVAVTEEELRAAYTAHEAEFQEPEQVHAAQLVVKGLDEARRVQAQLKAGKKFAD 80

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
           ++RR  + + D  +    G   +G+     P  ++++F +        +   V   +  Y
Sbjct: 81  LARRYSLSA-DAKVGGDLGFFPRGQ---MPPVFDEVVFNL-----RPGQVSDVVSTEYGY 131

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
              ++ E  PAR R   EV   V+      K  EE      + +L+ +K
Sbjct: 132 HLFRVLEFKPARKRDFVEVRAKVEAREVKRK-QEEAHEAFEKALLDKAK 179


>gi|160892220|ref|ZP_02073223.1| hypothetical protein BACUNI_04684 [Bacteroides uniformis ATCC 8492]
 gi|270296161|ref|ZP_06202361.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480738|ref|ZP_07939824.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_1_36]
 gi|156858698|gb|EDO52129.1| hypothetical protein BACUNI_04684 [Bacteroides uniformis ATCC 8492]
 gi|270273565|gb|EFA19427.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903079|gb|EFV24947.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_1_36]
          Length = 712

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 94/725 (12%), Positives = 206/725 (28%), Gaps = 132/725 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     S  V  V  + +    F    +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGESISAQDFQALVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   +I    G    S+  ++  +  ++    V+   +++  + +GL      +   I  
Sbjct: 61  EYTEVIKFSSGNSALSDE-QTNQIKDEVWRTYVNNKLIEKEAKKLGLVVSKAEIQAIINA 119

Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHYTKML-------- 159
                 +   F       F  D+    L       +  +   +Y ++Y  M         
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQM-PSQYAEYYESMYKFWSFLEK 178

Query: 160 ------SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV------------DYIVLNNRH 201
                  +     +    +  + +    A     E   +              IV+ +  
Sbjct: 179 SLIQARLQEKYQALITKSLFSNPVEAQDAFDARVEQSDLLLAAVPYSSIVDSTIVIKDSD 238

Query: 202 VPAIADPSNAVLTQWFE---------------------------------KYKDNYRA-- 226
           + A  D       Q+ E                                     +Y    
Sbjct: 239 LKAAYDKKKEQFKQYVETRNIKFIDVQVTASAEDRAALQKEMEEYTEQLTANPSDYTTFI 298

Query: 227 -------PEYKRISYILFDVHEKEKKIE-------------ISNDELQAEYEKNKEKYFS 266
                  P             +   +++             +S++ L +   K       
Sbjct: 299 RSTGSEAPYTDLFYTTKSLPADVTARLDSVAVGGVFGPYYNVSDNTLNSF--KKLATAAM 356

Query: 267 PEIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318
           P+     Q+    +        AD  + ++K G  F ++A++ G++   + IS  ++   
Sbjct: 357 PDSIEFRQIQVVAEDAEKTKTLADSIYNAIKGGASFAEVAKKYGQTGEPTWISSANYEGA 416

Query: 319 YIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
            I   +L    ++ +L +  + T +  G    VI  V+N K         VK      + 
Sbjct: 417 QIDGDNLKYITAVTTLGQN-ELTNLALGQAN-VILQVTNKKA--------VKDKYKVAVI 466

Query: 377 I---TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
                 + E   + Y    +F+A   +++++    +     L  +D A        +  I
Sbjct: 467 KRPVEFSKETYSKAYNEFSQFIAANNTLEKMIANAEDAGYKL--LDRADLYSSEHGIGGI 524

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
              +  L   F                   + V +   +P   R L  V   ++ +    
Sbjct: 525 RGTKDALKWAFEAKAGEVSGLYECGESDRMLVVGVASIVPEGYRPLALVKDQLRAEILRD 584

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
           K AE++ +          ++ KN       +  S+                    +    
Sbjct: 585 KKAEKIMADMKAANATSFEQYKNM---ANAVSDSVKHVTFSAPAYIPALRSSEPLVGAYA 641

Query: 554 SGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
           S         PI+      V +     K+     K+   + L  M  + +    I+ L  
Sbjct: 642 SIAEVNKLSAPIKGNGGVFVLQPYAKEKLNETFNKETEEANLANMHAR-MASQFISDLYM 700

Query: 613 QYSVT 617
           + +V 
Sbjct: 701 KANVK 705


>gi|298372736|ref|ZP_06982726.1| peptidyl-prolyl cis-trans isomerase [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275640|gb|EFI17191.1| peptidyl-prolyl cis-trans isomerase [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 702

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 97/719 (13%), Positives = 221/719 (30%), Gaps = 130/719 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           L  IR      +  I + V  + F++     + + F     + V S+   KV ++ F+ S
Sbjct: 4   LGRIRNH--GVLLLIVIGVALLIFIVTDFVNNGSTFFREQKANVGSIDGDKVKYNDFLAS 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
             Q       + G  ++ +   S  + +++ + +V    +++   +IG+      +   I
Sbjct: 62  LNQMQDFYKVERGQNIDDQM--SEQIRQEVWNQIVMRQVVEKDARNIGMGVSKQELSDLI 119

Query: 120 ARS---------PLFHGKD-NKFSHDVFVSRLA-------REGINEKE--YIDHYTKMLS 160
                       P+F   +   F  ++  + +         +  N ++   + +Y K + 
Sbjct: 120 MSKNPSPLIMMRPVFQNPETGMFDPNIVANFIKELESADGNKNANPEQVVLMKNYWKFIE 179

Query: 161 RTDVVGMFV---GGMRPSNLLL---DQAKRFYFENRSVDYIVLNNRHVP---AIADPSNA 211
                G        +   +L+    +    +     SVD +     +     +    +++
Sbjct: 180 TNVKFGSLFEKYNTLLTKSLVTNTKEAQFAYNNSKYSVDVLYAMKPYFTIADSTVKVADS 239

Query: 212 VLTQWFEKYKDNYRAP--------------------------EYKRISYILFDVHEKEKK 245
            +   ++K K+ ++                            E  ++ +   +       
Sbjct: 240 EVEALYKKKKEQFKQDPYVDIDFVVFPIKPSKEDIDAVRKQIETAKVGFAAVNDSLLTDT 299

Query: 246 IEISND---------------ELQAE--------------------YEKNKEKYFSPEIR 270
           +  ++D               +L+                        K  +    P+  
Sbjct: 300 VNFNSDVPYRDVFLAQGDIPSDLRDFAFSADRGVVFGPVFVDNTFKIAKVVDTKQMPDSV 359

Query: 271 TVEQLVFPNQKEADEAFQS------LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
            +  +    +  A+           L K   F  LA++        S G     ++  V+
Sbjct: 360 KLSFIAIQ-EATAEATKAKVDSVLGLAKQTPFATLAQQYSADKQSGSRGG-DIGWVRQVT 417

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYV--IAHVSNI-KPSFTVSFQEVKKDIANQMRITKAS 381
           L+  +               S G    I  V+   KP   V    ++    N        
Sbjct: 418 LSPELLRKVSAAAINEPFVMSQGSAASIFVVTERTKPVKMVKLAVIE---RNVATSNGTQ 474

Query: 382 EKVKEDYKRLEEFLAL-GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
            K+ ++ K+    L   G+  D+ ++ +        ++     D     +  IP   Q++
Sbjct: 475 AKIFQEAKQFAGLLGGNGSDFDKKAKEKN-----YQVIPANTIDRNFPRLLNIPETRQVI 529

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
              F  D  +     V     + +   +K       + L+EV   +  + +  K  + + 
Sbjct: 530 RWAF--DSKVGATSDVFECGDNLVVATVKRMNKEGYKTLDEVKPQLLSELRKDKKFDMMK 587

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
                        GK    + ++ G S+ T   +    N     G+D  + + + P   V
Sbjct: 588 G---------LFAGKTIDRL-RDEGLSVDTVKGLTFASNSAGSLGFDA-AMIANAPFAEV 636

Query: 561 K--CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                P++  +   VF+V +    P     K + Y+    N  L   V+  LK  Y V 
Sbjct: 637 NKLSAPMKGNIGAFVFQVLSKTENPEPFDLKQMKYVIGQQNSGLFYYVLEALKKAYKVK 695


>gi|91761956|ref|ZP_01263921.1| hypothetical SurA-like protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717758|gb|EAS84408.1| hypothetical SurA-like protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 473

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 161/478 (33%), Gaps = 68/478 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+   +  S+  +  + L+ + +    +G     FS    + +  +    +    F++ +
Sbjct: 1   MINPFKNFSKKKIGGLLLIFVIIVAFGFGGFGGGFSTGNQNNIAKINNTNISTQDFMD-Y 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E G+  Q I   ++        + +++L  LVS   LD  IE++ L      +  +I 
Sbjct: 60  LNESGLSQQVIKENID------KNIIEELLSTLVSTTLLDLEIEELNLSITEDVLIRKIK 113

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +  FH ++  F   ++   L     +   +         +  +     GG +    L++
Sbjct: 114 NNKNFHDENGLFQRTLYEKFLLTNNSSAAMFEIRLKNNELQKQLFTYISGGTKSPEFLIN 173

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +  +   +   ++YI L+          ++  +  + E+        E  +  YI F   
Sbjct: 174 KFYKENNKKLDIEYIDLST-FYKKKEMFTDNDIKFFVEENA------EKLKQDYIDFSF- 225

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                +EIS   L    + N+  +                 + D+    + K   F  + 
Sbjct: 226 -----VEISPKNLLGIDDFNQAFF----------------DKIDDIENQISKNIDFKTIV 264

Query: 301 EEQGKSLSDIS--LGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +    S ++++  +   +K+ I ++      D I  L   G +           I +  N
Sbjct: 265 KNLDISPTEVNSYINLDNKKIIENMIYNSREDKIEILENNGAY-----------IFYNIN 313

Query: 356 IKPSFTVSFQE--VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
              S     +    K+ I N +   +  E  K   +++ +      S DE  +   I  I
Sbjct: 314 NSISKLPDLENPIFKEQITNLLFQKEKFEFNKNILEKINKKTFNQVSFDEFGKN-NIKEI 372

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
            L  ++   K              Q+L+ +     P++    +A  +      +  + 
Sbjct: 373 KLDSINDTKKFETN--------SIQILYSL-----PINSFTLIANNENDVFIAKTIKY 417


>gi|254476741|ref|ZP_05090127.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. R11]
 gi|214030984|gb|EEB71819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. R11]
          Length = 283

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 80/205 (39%), Gaps = 12/205 (5%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI-------EISNDELQAEYEKNKE 262
           + ++ Q   K + N   P+Y  +S            +         + +E++A YE+   
Sbjct: 71  DQLIQQTALKQQLNGEVPKYVELSLENESRSLLAADVIEKVMENAATEEEVRAAYEEQYS 130

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEY 319
                +      ++  ++++A+E    L++G  F   A E+    S      LG F+K  
Sbjct: 131 DGNGGDEFNASHILVESEEDAEEIRAELEEGADFATTARERSTGPSGPNGGELGWFTKGR 190

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           +      +++ +L+  G+ +  +   FG+ +  ++  + S    F E++  +A Q+R   
Sbjct: 191 MV-PEFEEAVIALS-AGEISAPVQTQFGWHVIKLNERRKSAAPEFAEIRDQLAAQIREEA 248

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEI 404
             E V+      E        +D  
Sbjct: 249 VEESVRTLTTEAEIERPEIEDLDPA 273


>gi|220924508|ref|YP_002499810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           nodulans ORS 2060]
 gi|219949115|gb|ACL59507.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           nodulans ORS 2060]
          Length = 285

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 66/154 (42%), Gaps = 6/154 (3%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA-- 300
           E K  ++ +  ++ Y++  +     E      ++  ++ EA +    +K G+ F ++A  
Sbjct: 118 EAKKAVTPEAARSLYDETVKTLKPEEEVHARHILVESEAEAKKIAGRIKGGEDFAKVAAE 177

Query: 301 --EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
             ++ G       LG F+KE +   + A++ F L   G  +  +   FG+ +  V   + 
Sbjct: 178 TSKDPGSKAEGGDLGWFTKERMV-PAFAEAAFKL-DAGKVSDPVKTQFGWHVIKVEEKRT 235

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               SF E+K+ I   +      + + +  ++ +
Sbjct: 236 KPVPSFDEMKEQIDTYLTRKTQQDIITKLREQAK 269



 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 6/158 (3%)

Query: 469 KESIPARDRKL--EEVLT-DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           K   P   R L  E V T   +++        E  ++A ++     K G++F  +     
Sbjct: 121 KAVTPEAARSLYDETVKTLKPEEEVHARHILVESEAEAKKIAGRI-KGGEDFAKVAAETS 179

Query: 526 ASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
               +  +   +     +          F      V   P++    + V KV   +  PV
Sbjct: 180 KDPGSKAEGGDLGWFTKERMVPAFAEAAFKLDAGKV-SDPVKTQFGWHVIKVEEKRTKPV 238

Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
              D+    +   + +     +I  L+ Q  +   D  
Sbjct: 239 PSFDEMKEQIDTYLTRKTQQDIITKLREQAKIEKTDAA 276


>gi|312796410|ref|YP_004029332.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI
           454]
 gi|312168185|emb|CBW75188.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia
           rhizoxinica HKI 454]
          Length = 260

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 3/156 (1%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K  + S+DE++A YE+  ++        +  ++ P++++A E    +K G  F  L
Sbjct: 103 DDFLKNNKPSDDEIKARYEQLIKQAGGGNELHLHHILVPDEQQAKELIAKIKAGASFEDL 162

Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G       P       AD+   L K    +  +H  FG+ I  + + 
Sbjct: 163 AKQHSKDPGSAKNGGDLDWANPQSYVPEFADAAGKLKKGEVTSTPVHTQFGWHIIRLDDS 222

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +        +VK  +A Q+   K  +   E +K  +
Sbjct: 223 RAIQPPPLDQVKAQVAQQLTQEKLQQFNAELHKNAK 258



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 58/173 (33%), Gaps = 12/173 (6%)

Query: 456 VALPDGSYMW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV---------SSKANQ 505
           +AL D S +    I + +       +E+    ++  K      E+           +A +
Sbjct: 89  IALADQSVVIRALIDDFLKNNKPSDDEIKARYEQLIKQAGGGNELHLHHILVPDEQQAKE 148

Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFP 564
           L+ +  K G +F D+ K       +      +D    + +  +            V   P
Sbjct: 149 LIAKI-KAGASFEDLAKQHSKDPGSAKNGGDLDWANPQSYVPEFADAAGKLKKGEVTSTP 207

Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +     + + ++ +S+       D+  + + Q + ++ L    A L     + 
Sbjct: 208 VHTQFGWHIIRLDDSRAIQPPPLDQVKAQVAQQLTQEKLQQFNAELHKNAKIQ 260



 Score = 40.7 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 51/154 (33%), Gaps = 16/154 (10%)

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKV---------KEDYKRLEEFLALGTSMDE 403
           + +   +   S  E+K      ++      ++         ++  K L   +  G S ++
Sbjct: 102 IDDFLKNNKPSDDEIKARYEQLIKQAGGGNELHLHHILVPDEQQAKELIAKIKAGASFED 161

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
           ++++    S D       G        + +P       ++   +   +  HT       +
Sbjct: 162 LAKQH---SKDPGSAKNGGDLDWANPQSYVPEFADAAGKLKKGEVTSTPVHTQF----GW 214

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
             +++ +S   +   L++V   V +     K  +
Sbjct: 215 HIIRLDDSRAIQPPPLDQVKAQVAQQLTQEKLQQ 248


>gi|228901403|ref|ZP_04065591.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222]
 gi|228858227|gb|EEN02699.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222]
          Length = 303

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 89/234 (38%), Gaps = 29/234 (12%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           +V    G +  S+      + +  +N S  V   VL++++     + +   L +  +K  
Sbjct: 51  IVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLDDKYKVTDEEVT-KQLKELKDKMG 109

Query: 222 DNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
           DN+         +  +  +    L    EK  K  ++  + +  Y+             V
Sbjct: 110 DNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDFKDHYK---------PKLQV 160

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADS 328
             ++  ++K A E  + L  G+ F  LA++  +       G     F    +      D+
Sbjct: 161 SHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK-EFEDA 219

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +
Sbjct: 220 AYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 270


>gi|163759891|ref|ZP_02166975.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Hoeflea
           phototrophica DFL-43]
 gi|162282849|gb|EDQ33136.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Hoeflea
           phototrophica DFL-43]
          Length = 283

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 86/217 (39%), Gaps = 12/217 (5%)

Query: 181 QAKRFYFENRSVDY--IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           Q +R   E R V     V++ + +   A+      T+ F+       A +  R  + +  
Sbjct: 55  QFERLPAEQRRVAALAAVIDIKALARKAEAEELDQTEEFK----RLMAFQRDRALHNVLF 110

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                +   IS+ +++A Y++      + E  +   ++   + EA      L  GK F +
Sbjct: 111 RSGVVE--SISDADVKARYDQEVAATQAEEEISARHILVETEDEAKALITELDAGKDFAE 168

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           LA+E+     + +   LG F+K  +       + F+L K       +   FG+ +  V +
Sbjct: 169 LAKEKSTGPSAGNGGDLGYFTKGRMV-PEFEAAAFALEKGQYGKEPVKTQFGWHVIKVED 227

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            + +    F++V   I   +   +  E ++E    ++
Sbjct: 228 RRDAAPPPFEQVADQIRQVLLRERYGELIREARDNVD 264



 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 17/159 (10%)

Query: 365 QEVKKDIANQMRITKASEKV---------KEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
            +VK     ++  T+A E++         +++ K L   L  G    E+++  K      
Sbjct: 121 ADVKARYDQEVAATQAEEEISARHILVETEDEAKALITELDAGKDFAELAKE-KSTGPSA 179

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
                 G   KG+ V       +     F  +        V    G +  +++++   A 
Sbjct: 180 GNGGDLGYFTKGRMV------PEFEAAAFALEKGQYGKEPVKTQFG-WHVIKVEDRRDAA 232

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
               E+V   +++     +  E +    + + +E   EG
Sbjct: 233 PPPFEQVADQIRQVLLRERYGELIREARDNVDIEVLDEG 271


>gi|228921530|ref|ZP_04084852.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838149|gb|EEM83468.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 293

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 104/271 (38%), Gaps = 29/271 (10%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217
           S  ++V    G +  S+      + +  +N S  V   VLN+++     + +   L +  
Sbjct: 37  SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 95

Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +K  DN+         +  +  +    L    EK  K  ++  +++  Y+          
Sbjct: 96  DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 146

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSL 325
              V  ++  ++K A E  + L  G+ F  LA++  +       G    E+ P       
Sbjct: 147 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEF 206

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            D+ + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +   
Sbjct: 207 EDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD--P 261

Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           + ++++   L     +    +  K    +L 
Sbjct: 262 QFHQQVTRELLKNADIKVSDKDLKDTFKELE 292


>gi|229179148|ref|ZP_04306503.1| Foldase protein prsA 1 [Bacillus cereus 172560W]
 gi|228604303|gb|EEK61769.1| Foldase protein prsA 1 [Bacillus cereus 172560W]
          Length = 285

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 104/271 (38%), Gaps = 29/271 (10%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217
           S  ++V    G +  S+      + +  +N S  V   VLN+++     + +   L +  
Sbjct: 29  SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 87

Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +K  DN+         +  +  +    L    EK  K  ++  +++  Y+          
Sbjct: 88  DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 138

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSL 325
              V  ++  ++K A E  + L  G+ F  LA++  +       G    E+ P       
Sbjct: 139 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEF 198

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            D+ + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +   
Sbjct: 199 EDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD--P 253

Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
           + ++++   L     +    +  K    +L 
Sbjct: 254 QFHQQVTRELLKNADIKVSDKDLKDTFKELE 284


>gi|325954706|ref|YP_004238366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Weeksella virosa DSM
           16922]
 gi|323437324|gb|ADX67788.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Weeksella virosa DSM
           16922]
          Length = 720

 Score =  110 bits (274), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 97/612 (15%), Positives = 200/612 (32%), Gaps = 85/612 (13%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFL---IWGLSDALF--SVSGSSTVVSVGRQKVPFSSF 56
           L  IR+  R WV  I + V  V F+   ++  + A+        S V +V  +K+    +
Sbjct: 4   LGEIRR--RPWVIMIVIGVALVAFITGDLFSENSAIRKVFAGDPSVVGTVNGEKIGIGEY 61

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            N+      M+  + G  V   +A      ++   +LVS   + Q  ++IGL+      W
Sbjct: 62  QNAINLTTNMLQAQ-GQNVTPNQAA-----QQTWASLVSSKIVQQIADNIGLKVSDEEFW 115

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH---------YTKMLSRTDVVGM 167
             +A++  F       + +           N +    +             L        
Sbjct: 116 DFVAQN--FGMGSGDEAKNNIAQLEQAASANPEMMQQYQGWLSTANAIRSQLMLQKYSSY 173

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI--ADPSNAVLTQWFEKYKDNYR 225
                  ++   D  + +  E  ++DY  ++   +        S+  +  + +K+   + 
Sbjct: 174 VKATTLVTSKEADIQQTYNAEMATIDYAKVDYGTLEKKLNVKVSDEDIKAYVKKHPKQFE 233

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
                +++Y  F         +    E+   Y++++ K+      T   + F  Q   D 
Sbjct: 234 VQPMVKLAYTFFPAKATAADEQAVLTEI-NRYKQSQIKHDKENNITDTIVSFA-QANNDS 291

Query: 286 AFQSLKKGKKFI------------QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
            + S      F+            QL E+    ++  ++G     +    S    +F L+
Sbjct: 292 IYVSQNSDDPFMSNYFTKQQLASFQLPEDAQSFINSATIGQVGGPFRIGNSYQ--LFKLS 349

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFT---VSFQEVKKDIANQMRITKAS-EKVKEDYK 389
           K  +    +  S    I    +  P+      S +E KK     +   KA+  +     +
Sbjct: 350 KTKEIKDSVKSS---HILVAFDGSPAAQGVKRSKEEAKKLAETYLAEAKANPSQFGALAE 406

Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
           +  +              +K  +     + + G+      V          +R F    P
Sbjct: 407 KYSD--------------DKGSATQKGSIGWVGQQNALTPV----------YRSFIFSKP 442

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
           +     V    G Y  +++ E   A+++   +    VKK   + +T+++  + A   V  
Sbjct: 443 VGTIDLVESEFG-YHIIRVDE---AKNKTGYQFAHLVKKIEPSKETSDKAFNDARVYVQS 498

Query: 510 Y-SKEGKNFRDIGKNLGASLLTTNQINRMDN-ENKFFGYDGISQVFS------GPVEMVK 561
             +K  K+F  + KN G     T  + R      +    D    + +             
Sbjct: 499 VENKSVKDFTTLAKNKGYDTKETEGLERFATMIGENLPNDQDDAILAWAFGKKTDKGATN 558

Query: 562 CFPIENGLSYVV 573
            F   NG   VV
Sbjct: 559 LFTTANGDYIVV 570



 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 115/366 (31%), Gaps = 27/366 (7%)

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAE----EQGKSLSDISLGSFSKEY 319
            SP  + V++     +K A+      K     F  LAE    ++G +    S+G   ++ 
Sbjct: 369 GSPAAQGVKRSKEEAKKLAETYLAEAKANPSQFGALAEKYSDDKGSATQKGSIGWVGQQN 428

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRIT 378
                    IFS    G    ++   FGY I  V   K      F  + K I  ++    
Sbjct: 429 ALTPVYRSFIFS-KPVGTI-DLVESEFGYHIIRVDEAKNKTGYQFAHLVKKIEPSKETSD 486

Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
           KA    +   + +E           +++ +   + +   ++     +   E       + 
Sbjct: 487 KAFNDARVYVQSVENK--SVKDFTTLAKNKGYDTKETEGLERFATMI--GENLPNDQDDA 542

Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
           +L   FGK       +     +G Y+ V + +               V+   K     + 
Sbjct: 543 ILAWAFGKKTDKGATNLFTTANGDYIVVHLIDKFDKGLAPASIARPLVEPILKKQLITKA 602

Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGP 556
           V+ K                   K+ GA + TT  +N  +      G +   +   F   
Sbjct: 603 VNEKIGN---------GGINAFMKSFGA-VKTTTNVNFGNGVIADVGIEPRVVGAAFGIK 652

Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-DKFISYLTQMMNKDLLDSVIAYLKSQYS 615
                      G   V + +T SK  P  +K D  +  + + +   +  ++I  L     
Sbjct: 653 ENT--SSKAIQGNEGVYYIITKSKTLPKGQKGDSLLENMNRSLKNKVEQTLIQSLIEAAD 710

Query: 616 VTVHDN 621
           +  +  
Sbjct: 711 IVDNRA 716


>gi|51894079|ref|YP_076770.1| putative post-translocation molecular chaperone [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857768|dbj|BAD41926.1| putative post-translocation molecular chaperone [Symbiobacterium
           thermophilum IAM 14863]
          Length = 297

 Score =  110 bits (274), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/401 (14%), Positives = 120/401 (29%), Gaps = 125/401 (31%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFS--------VSGSSTVVSVGRQKVPFSSFINSWKQELG 65
           A I L V     ++ GL               +  + V +V  +++             G
Sbjct: 9   ATIALAV-VATLVVAGLGGYFVGSSLQRPGTGNDPAVVATVNGEQITRDEVHQKLMTYYG 67

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
                                  ++D+++    +DQ     G+      V  E+  +   
Sbjct: 68  A---------------------AVVDDMILTRLVDQEAARAGVTVTDAEVEEEVEATKAA 106

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
           +G D  FS       L++ G++E ++ D   + +  T V+                    
Sbjct: 107 YGGDLYFSWA-----LSQYGLSEAQFRDMLRRDMVATAVLRQ------------------ 143

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
                                 P +A L  +F++ +    A + ++I             
Sbjct: 144 -------------------QLQPDDATLKAYFDEMQS---AEQTRKI------------- 168

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
                                     V  ++   +++A+E    L  G  F QLA+ + K
Sbjct: 169 -------------------------KVRHILVDTEEKANEIKARLDAGADFAQLAQAESK 203

Query: 306 S----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     LG   K          + F+L   G+ +  +  ++G+ I        ++ 
Sbjct: 204 DTASAAKGGDLGLIGKGDTV-SEFEAAAFAL-NDGEISAPVQSTYGWHIIQ------AYQ 255

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
           + F++ K+ I  Q    K S ++   Y  L E   +  ++ 
Sbjct: 256 LHFEQEKQTILEQYLNEKVSARLGTWYSELRENAQITNTLA 296


>gi|240849866|ref|YP_002971254.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
 gi|240266989|gb|ACS50577.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
          Length = 317

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 64/149 (42%), Gaps = 4/149 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           +IS+ +L+A Y++        +      ++   +KEA+   + L KG+ F ++A++    
Sbjct: 137 KISDTDLEALYKEEVAALPKEDEVKARHILVKTRKEAEAIIKHLNKGENFEEIAKKSSTD 196

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG FS   +      D+ F L         +   FG+ I  + + +     +
Sbjct: 197 GSAAVGGDLGYFSHGQMVKP-FEDAAFGLKIGEYTKQPVESPFGWHIIKLEDRRLKQPPA 255

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
           F +VK+ +  Q+   +  E + +   +++
Sbjct: 256 FDDVKEMLRTQLIKKRYQELIVDLRSKMD 284



 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 43/140 (30%), Gaps = 6/140 (4%)

Query: 483 LTDVKKDWKTVKTAEE-----VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             +V    K  +            +A  ++   +K G+NF +I K            +  
Sbjct: 148 KEEVAALPKEDEVKARHILVKTRKEAEAIIKHLNK-GENFEEIAKKSSTDGSAAVGGDLG 206

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
              +           F   +      P+E+   + + K+ + ++      D     L   
Sbjct: 207 YFSHGQMVKPFEDAAFGLKIGEYTKQPVESPFGWHIIKLEDRRLKQPPAFDDVKEMLRTQ 266

Query: 598 MNKDLLDSVIAYLKSQYSVT 617
           + K     +I  L+S+  V 
Sbjct: 267 LIKKRYQELIVDLRSKMDVK 286


>gi|321313742|ref|YP_004206029.1| hypothetical protein BSn5_11930 [Bacillus subtilis BSn5]
 gi|320020016|gb|ADV95002.1| hypothetical protein BSn5_11930 [Bacillus subtilis BSn5]
          Length = 297

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/381 (16%), Positives = 116/381 (30%), Gaps = 119/381 (31%)

Query: 13  VAKIFLVVLFVPFLIWGLS---DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           +  I L  L V  +    +       + S   ++ ++G + V    ++   + + G    
Sbjct: 6   IWTIILGALLVCCIAVAYTLTKSQAGASSSGESIATIGGKSVTREEWLKEMEDQYG---- 61

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
                            K  L+++++   ++Q  +   L+     V  E          +
Sbjct: 62  -----------------KSTLEDMINVRVVEQLAKKNNLKISKSEVDREFLLIKA---VN 101

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           N F  D        E   EKE+ D     +   +++                        
Sbjct: 102 NSFYED--------EHTTEKEWKDQIRYNILLEELL-----------------------T 130

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           R +D               SN  L  ++ K K+ Y+  +  RI                 
Sbjct: 131 RDIDI--------------SNKELESFYHKNKELYQFDDSYRI----------------- 159

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--- 306
                                    +V  +++EA E  + LK G  F  +A E+      
Sbjct: 160 -----------------------RHIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYT 196

Query: 307 -LSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                 LG  ++  + IP   + ++  +L +       I  S GY I  +     + T S
Sbjct: 197 SPYGGDLGFVTEASDNIPSAYIEEAK-TLKEDEWSQEPIKVSNGYAIIQLKEKLKARTFS 255

Query: 364 FQEVKKDIANQMRITKASEKV 384
           F EVK  I  Q+ + +  +K 
Sbjct: 256 FDEVKDQIRRQIAMDQLGDKA 276



 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 9/120 (7%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL--LFR 442
           +E+ + + + L  G+S + ++          P     G   +  +     Y E+   L  
Sbjct: 167 EEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKE 226

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                +P+            Y  +Q+KE + AR    +EV   +++     +  ++ + K
Sbjct: 227 DEWSQEPIKVS-------NGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLGDKATVK 279


>gi|148261232|ref|YP_001235359.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
           JF-5]
 gi|146402913|gb|ABQ31440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
           JF-5]
          Length = 311

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 4/156 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++++  ++A Y+ +  K   PE     Q++   Q+EA++    L KG KF  LA++    
Sbjct: 142 KLTDAAVKAYYDAHYVKAKQPEEVKARQILVKTQQEAEKIIAQLGKGAKFSALAKKYSID 201

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                   LG F+K+ +     AD+ F+L         +H  FG+ +      +      
Sbjct: 202 PGAKNGGELGWFTKDEMVKP-FADAAFALKPGTYTKTPVHSQFGWHVIESQGKREKPVPP 260

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
             +VK  I  Q+     +  +++  K L+  L    
Sbjct: 261 LADVKDQIRQQITNKAVTAALEDARKGLDIKLFNPD 296



 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 38/137 (27%), Gaps = 1/137 (0%)

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
           V     ++ K  +   +   +A +++ +  K G  F  + K         N         
Sbjct: 157 VKAKQPEEVKARQILVKTQQEAEKIIAQLGK-GAKFSALAKKYSIDPGAKNGGELGWFTK 215

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601
                      F+         P+ +   + V +    +  PV         + Q +   
Sbjct: 216 DEMVKPFADAAFALKPGTYTKTPVHSQFGWHVIESQGKREKPVPPLADVKDQIRQQITNK 275

Query: 602 LLDSVIAYLKSQYSVTV 618
            + + +   +    + +
Sbjct: 276 AVTAALEDARKGLDIKL 292


>gi|328950420|ref|YP_004367755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450744|gb|AEB11645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus
           hydrothermalis DSM 14884]
          Length = 308

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/380 (14%), Positives = 116/380 (30%), Gaps = 97/380 (25%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE- 78
           ++ +PF          +      V  V  + +  S     ++  L  +  + G  +  E 
Sbjct: 10  LILLPFA---------AAQQDVVVAEVDGEPILLSELDLQFELFLRGVFGQQGVPITDEL 60

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVF 137
           RAR   L  +IL+ LV    + Q     GL A    V   +           +F     F
Sbjct: 61  RARFAPLKAQILERLVRDRVVLQAARKAGLAASEEAVRERLMGIKE------QFPDSAAF 114

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
            S L   GI      D   +++        ++  +RP             + R       
Sbjct: 115 ESALEASGIPS---EDVLLQLMREAQTYNNYLDWLRP-------------QLR------- 151

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                      S   +  ++   + ++  PE   +S+                       
Sbjct: 152 ----------ISEPAMRLYYYLDRASFAEPEELCVSH----------------------- 178

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLG 313
                            ++   ++EA+   + L  G+ F  LA     + G + +  +LG
Sbjct: 179 -----------------ILVRTREEAEAVLERLNAGEAFEDLANQLSIDPGSNTTGGALG 221

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                   +     +   L + G+ T   +   FG+ +  +   +P+    F+ V+ +I 
Sbjct: 222 CHPAGTFIEP-FERAARRL-EVGELTRTPVESEFGFHVIRLDGFRPARVPPFEAVRGEIE 279

Query: 373 NQMRITKASEKVKEDYKRLE 392
            +       + +   ++R E
Sbjct: 280 ARFLDRAVRQHLDYLFERAE 299



 Score = 38.0 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           +E+ + + E L  G + ++++ +    SID       G          I   E+   R+ 
Sbjct: 184 REEAEAVLERLNAGEAFEDLANQL---SIDPGSNTTGGALGCHPAGTFIEPFERAARRLE 240

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
             +   +   +       +  +++    PAR    E V  +++  +      + +
Sbjct: 241 VGELTRTPVESEF----GFHVIRLDGFRPARVPPFEAVRGEIEARFLDRAVRQHL 291


>gi|49473855|ref|YP_031897.1| peptidyl-prolyl cis-trans isomerase [Bartonella quintana str.
           Toulouse]
 gi|49239358|emb|CAF25691.1| Peptidyl-prolyl cis-trans isomerase [Bartonella quintana str.
           Toulouse]
          Length = 317

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 78/221 (35%), Gaps = 22/221 (9%)

Query: 182 AKRFYFENRSV-------DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
             RF  E R +       D  VL    +    D + A     ++K      A     +  
Sbjct: 76  LVRFPDEQRRITVLKAYLDMQVLAKAAISKGIDKTEA-----YDKR----MAVMRDNVLQ 126

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
            L+       +  IS+ +L+  Y K        +      ++   +KEA+   + L KG+
Sbjct: 127 QLYFKQMIVDQ--ISDTDLETLYNKEVAALPKEDEVKARHILVKTKKEAEAIIKRLSKGE 184

Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F  +A++     S      LG FS   +      D+ F L         +   FG+ + 
Sbjct: 185 SFEAVAKKNSTDGSAAVGGDLGYFSHGQMVKP-FEDAAFGLKVGEYTKKPVESPFGWHVI 243

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            V + +      F +VK+ +  Q+   +  + + +    ++
Sbjct: 244 KVEDRRLKQPPIFDDVKEMLRTQLIKERYQKLIVDLRNTID 284



 Score = 42.3 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 1/131 (0%)

Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
           + + K      +   +A  ++   SK G++F  + K            +     +     
Sbjct: 157 EDEVKARHILVKTKKEAEAIIKRLSK-GESFEAVAKKNSTDGSAAVGGDLGYFSHGQMVK 215

Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
                 F   V      P+E+   + V KV + ++      D     L   + K+    +
Sbjct: 216 PFEDAAFGLKVGEYTKKPVESPFGWHVIKVEDRRLKQPPIFDDVKEMLRTQLIKERYQKL 275

Query: 607 IAYLKSQYSVT 617
           I  L++   V 
Sbjct: 276 IVDLRNTIDVK 286


>gi|91776233|ref|YP_545989.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
           flagellatus KT]
 gi|91710220|gb|ABE50148.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
           flagellatus KT]
          Length = 272

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 79/188 (42%), Gaps = 8/188 (4%)

Query: 219 KYKDNYRAPEYKRISYILFD--VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
             + +Y A E      +L +  + +  KK  +S  +++  YEK K++    E  +   ++
Sbjct: 84  DKQPDYLAKEELTRRELLVNTFLQDYIKKNPVSEADIKLAYEKYKQELGDKEY-SARHIL 142

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSL 332
              + EA +    L KG  F +LA+E+ K          LG FS   +     +D++  L
Sbjct: 143 VSTEAEAKDIIAQLGKGGDFAKLAKEKSKDPGSQEKGGDLGWFSAAGMVKP-FSDAVVKL 201

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            K    T  +   FG+ +  + + + +   S+ +VK  +  Q++     + + +   + +
Sbjct: 202 QKGKYTTTPVQTQFGWHVIKLEDTRATQPPSYDDVKDGLQKQLQQRNLEKLLTDLRSKAK 261

Query: 393 EFLALGTS 400
                G +
Sbjct: 262 IEAPAGAT 269



 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV-- 557
            ++A  ++ +  K G +F  + K                 +  +F   G+ + FS  V  
Sbjct: 146 EAEAKDIIAQLGKGG-DFAKLAK----EKSKDPGSQEKGGDLGWFSAAGMVKPFSDAVVK 200

Query: 558 ---EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
                    P++    + V K+ +++       D     L + + +  L+ ++  L+S+ 
Sbjct: 201 LQKGKYTTTPVQTQFGWHVIKLEDTRATQPPSYDDVKDGLQKQLQQRNLEKLLTDLRSKA 260

Query: 615 SVT 617
            + 
Sbjct: 261 KIE 263



 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 96/276 (34%), Gaps = 43/276 (15%)

Query: 26  LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
           + +G+    F+   + +V +V  + +  S +    K+         G  V+        +
Sbjct: 12  VAFGMLQPAFAAGTNGSVATVNGKPIKQSLYDYIAKEASSR-----GQTVDD------NV 60

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGE----------------IARSPLFHGKD 129
              I++ L+    + Q  +  GL+     +  E                I ++P+    D
Sbjct: 61  KNVIINKLIGSELIYQEAQRTGLDKQPDYLAKEELTRRELLVNTFLQDYIKKNPV-SEAD 119

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
            K +++ +   L  +  + +  +   +      D++     G   + L  +++K    + 
Sbjct: 120 IKLAYEKYKQELGDKEYSARHIL--VSTEAEAKDIIAQLGKGGDFAKLAKEKSKDPGSQE 177

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-RAPEYKRISYILFDVHEKEKKIEI 248
           +  D    +   +      S+AV+       K  Y   P   +  + +  + +       
Sbjct: 178 KGGDLGWFSAAGMVKPF--SDAVVK----LQKGKYTTTPVQTQFGWHVIKLEDTRATQPP 231

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
           S D+++   +K        + R +E+L+   + +A 
Sbjct: 232 SYDDVKDGLQKQL------QQRNLEKLLTDLRSKAK 261


>gi|294101095|ref|YP_003552953.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminobacterium
           colombiense DSM 12261]
 gi|293616075|gb|ADE56229.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminobacterium
           colombiense DSM 12261]
          Length = 282

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 6/157 (3%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFI 297
           + +    + +S  E +  Y  +   +  P       ++  N++EA    + +K  K  F 
Sbjct: 116 LEKMFGNVSVSEKEARDYYTAHVTDFMIPSQIRASHILVENEEEAKRIREEIKTEKITFE 175

Query: 298 QLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
             A++     S      LG F  + +     + +  +L KKG+ +  +   +G+ I  + 
Sbjct: 176 DAAQKYSSCPSKAQKGDLGYFQSDQVV-PEFSQAAGAL-KKGEISAPVKSQYGWHIIRLE 233

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + KP     F+EVK  I   +   K ++   ++ +RL
Sbjct: 234 DKKPGSLQPFEEVKGQIETNLLREKRAQIYTDETERL 270


>gi|95930211|ref|ZP_01312949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133674|gb|EAT15335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 292

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 121/359 (33%), Gaps = 86/359 (23%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
           ++V    +    F+N+ +     + +K    ++ E      +    ++ +++   + Q  
Sbjct: 6   ITVNGTPISQFDFVNAMQSYSMELYRKTADQLSEEEIEQ--VQGLAVEQIIARELIFQTA 63

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
              G  A   ++  E+ +        N  S + F + L + GI++  Y     + LS   
Sbjct: 64  LAQGAIATDEQIKAEMDKVMA-----NFPSEEEFFATLEKAGIDQDSYYRMLRQDLSVKM 118

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +                                   + +     P+   +  ++++  D 
Sbjct: 119 MTE---------------------------------KKLADAPSPAAEEVKAFYDENPDK 145

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
            + P   R S+IL         I+++ D                           N++EA
Sbjct: 146 MKKPGQVRASHIL---------IKVTED---------------------------NREEA 169

Query: 284 DEAFQSLKK-----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
            +  + LK        +F  LA +     S      LG F    +       + FSL + 
Sbjct: 170 QKKIEELKNEVTGDAAQFGDLARQHSACPSKDKGGDLGFFGPGSMVK-EFDQAAFSL-EP 227

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           G  + ++   FGY +  V+  K   +++ +EV   I + ++  K +  ++   + ++E 
Sbjct: 228 GQISDIVETQFGYHLILVTERKDPESLTLEEVAPQIESFIKDQKGAILLQAWVEEMKEK 286


>gi|326790698|ref|YP_004308519.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
 gi|326541462|gb|ADZ83321.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
          Length = 352

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/364 (10%), Positives = 101/364 (27%), Gaps = 80/364 (21%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF---VVNSERARSVGLDKKILDN 92
           S +  + + +V   ++        +   +       G    ++   + +  GL    L  
Sbjct: 45  SEAAKTVLATVNGVEILQGDLDKVYNSMVAEYQSYYGESEEMLTFLKQQKPGL----LTG 100

Query: 93  LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
           L++   L Q  +++ +      V        ++    + +  +     +   G   + Y 
Sbjct: 101 LINRELLKQKAKELNITCTDEEVEK------IYSDLVSTYGEEQVQEVIKANGFTTETYK 154

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
               +  + + V      G                                     ++  
Sbjct: 155 AQIKEDEALSKVQEKMQEG---------------------------------EIKVTDED 181

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
           + +++++  D++       + +IL         +++++ +     +K             
Sbjct: 182 VKKYYDENIDSFTTGAGANMEHIL---------VKVADTDTDDYKKK------------- 219

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI------SLGSFSKEYIPDVSLA 326
                   +      + +  G  F +L  +      D        LG    E     +  
Sbjct: 220 ------CDEAVKTIEKEITDGTTFDELKTKYTADGIDTNMYVVEDLGFVQYEQPNYDTAF 273

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            +     K+G+ +  +  SFGY    V  IK       ++VK  I   +   + +     
Sbjct: 274 LAGAKEVKEGEISKAVKSSFGYHFIKVEGIKDKEVKPLEDVKAQITTTLENEQKNAYYNA 333

Query: 387 DYKR 390
             + 
Sbjct: 334 KLEE 337



 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 4/125 (3%)

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
            +K  E  K +E+ +  GT+ DE+  +     ID  +           E           
Sbjct: 217 KKKCDEAVKTIEKEITDGTTFDELKTKYTADGIDTNMYVVEDLGFVQYEQPNY----DTA 272

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
           F    K+    +          Y +++++       + LE+V   +    +  +     +
Sbjct: 273 FLAGAKEVKEGEISKAVKSSFGYHFIKVEGIKDKEVKPLEDVKAQITTTLENEQKNAYYN 332

Query: 501 SKANQ 505
           +K  +
Sbjct: 333 AKLEE 337


>gi|206971880|ref|ZP_03232829.1| foldase protein PrsA [Bacillus cereus AH1134]
 gi|206733265|gb|EDZ50438.1| foldase protein PrsA [Bacillus cereus AH1134]
 gi|326940633|gb|AEA16529.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 280

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 93/237 (39%), Gaps = 27/237 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217
           S  ++V    G +  S+      + +  +N S  V   VLN+++     + +   L +  
Sbjct: 24  SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 82

Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +K  DN+         +  +  +    L    EK  K  ++  +++  Y+          
Sbjct: 83  DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 133

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSL 325
              V  ++  ++K A E  + L  G+ F  LA++  +       G    E+ P       
Sbjct: 134 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEF 193

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            D+ + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +
Sbjct: 194 EDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 247


>gi|223039645|ref|ZP_03609931.1| foldase protein PrsA [Campylobacter rectus RM3267]
 gi|222879028|gb|EEF14123.1| foldase protein PrsA [Campylobacter rectus RM3267]
          Length = 270

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 19/246 (7%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN------AVLTQWF 217
           +       +  S++              V    L       + D +           +  
Sbjct: 17  LNAAVHATVNGSDITDKDIAFTLAAMPGVTLEQLPKDTQKKVIDETISRKLLLDEAKKSG 76

Query: 218 EKYKDNYRA--PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
            +  D Y+A   E K    +   +      +++S +E+   Y KNK ++  P     + +
Sbjct: 77  LEKTDEYKAALEEVKDNIALDLWMKRIFDNVKVSENEISDFYNKNKAEFAVPAQVKAKHI 136

Query: 276 VFPNQKEADEAFQSLK--KG----KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSL 325
           +   +K+A++   +LK  KG    KKF +LA+    +QG + +   LG F +  +     
Sbjct: 137 LVAAEKDANDVIAALKGLKGDALVKKFEELAKAKSTDQGSAENGGELGWFGQSQMVKP-F 195

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
           AD+ F+L K       +  +FGY +    + K + TV   EVK  I   +++ K    ++
Sbjct: 196 ADAAFALKKGEITAKPVKSNFGYHVILKEDSKAAGTVGLNEVKPQIEGNLKMEKFRNDIR 255

Query: 386 EDYKRL 391
           +    L
Sbjct: 256 KRGDEL 261


>gi|316931933|ref|YP_004106915.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris DX-1]
 gi|315599647|gb|ADU42182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris DX-1]
          Length = 305

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 69/161 (42%), Gaps = 5/161 (3%)

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           ++ DV   E K   +++ ++  YE+  ++    +      ++   + EA    + LKKG 
Sbjct: 117 LMDDVLAAEGKAATTDEAMKKVYEEAAKQISGEQEVHARHILVETEDEAKAVAEELKKGA 176

Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F +LA+++ K         LG F+K+ +     +   F+L + G  +  +   FG+ I 
Sbjct: 177 DFAELAKKKSKDPGASDGGDLGFFTKDQMV-PEFSAVAFAL-EPGKISDPVKSQFGWHII 234

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            V   +     SF +VK  I   +     S+ V +  +  +
Sbjct: 235 KVEEKRNRKPPSFDQVKAQIEQYVARKAQSDYVSKLRQAAK 275



 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 84/221 (38%), Gaps = 14/221 (6%)

Query: 399 TSMDEISRREKIVS--IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
             MD  S++E +++  ID+ +V  A +D K ++ A    +          DD L+ +   
Sbjct: 69  AQMDPASKKENVLAFLIDMKIVAKAAEDKKIQDSADFKKRLDFARNRLLMDDVLAAEGKA 128

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
           A  D +     +K+      +++     +V      V+T +E  + A +L     K+G +
Sbjct: 129 ATTDEA-----MKKVYEEAAKQIS-GEQEVHARHILVETEDEAKAVAEEL-----KKGAD 177

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
           F ++ K        ++  +           +  +  F+     +   P+++   + + KV
Sbjct: 178 FAELAKKKSKDPGASDGGDLGFFTKDQMVPEFSAVAFALEPGKI-SDPVKSQFGWHIIKV 236

Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
              +       D+  + + Q + +      ++ L+    V 
Sbjct: 237 EEKRNRKPPSFDQVKAQIEQYVARKAQSDYVSKLRQAAKVE 277


>gi|326404647|ref|YP_004284729.1| peptidyl-prolyl cis-trans isomerase [Acidiphilium multivorum
           AIU301]
 gi|325051509|dbj|BAJ81847.1| peptidyl-prolyl cis-trans isomerase [Acidiphilium multivorum
           AIU301]
          Length = 311

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 4/156 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++++  ++A Y+ +  K   PE     Q++   Q+EA++    L KG KF  LA++    
Sbjct: 142 KLTDAAVKAYYDSHYVKAKQPEEVKARQILVKTQQEAEKIIAQLGKGAKFSALAKKYSID 201

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                   LG F+K+ +     AD+ F+L         +H  FG+ +      +      
Sbjct: 202 PGAKNGGELGWFTKDEMVKP-FADAAFALKPGTYTKTPVHSQFGWHVIESQGKREKPVPP 260

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
             +VK  I  Q+     +  +++  K L+  L    
Sbjct: 261 LADVKDQIRQQITNKAVTAALEDARKGLDIKLFNPD 296



 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 38/137 (27%), Gaps = 1/137 (0%)

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
           V     ++ K  +   +   +A +++ +  K G  F  + K         N         
Sbjct: 157 VKAKQPEEVKARQILVKTQQEAEKIIAQLGK-GAKFSALAKKYSIDPGAKNGGELGWFTK 215

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601
                      F+         P+ +   + V +    +  PV         + Q +   
Sbjct: 216 DEMVKPFADAAFALKPGTYTKTPVHSQFGWHVIESQGKREKPVPPLADVKDQIRQQITNK 275

Query: 602 LLDSVIAYLKSQYSVTV 618
            + + +   +    + +
Sbjct: 276 AVTAALEDARKGLDIKL 292


>gi|229102919|ref|ZP_04233612.1| Foldase protein prsA 1 [Bacillus cereus Rock3-28]
 gi|228680505|gb|EEL34689.1| Foldase protein prsA 1 [Bacillus cereus Rock3-28]
          Length = 293

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 86/234 (36%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+  +T+  ++ KD               +  +  +         
Sbjct: 65  YQMVLSKALLDKYKVSDEEVTKQVKEAKDKMGDNFKETLEKIGLKNEDELKEKMKPEIAF 124

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 125 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 175

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  S+GY I  V++ K
Sbjct: 176 KQYSEDTGSKEQGGEIAGFGPGQTVKEFEEAAYKL-NAGQVSEPVKTSYGYHIIKVTDKK 234

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F+EVK  I   +   +  +   +  +++   L     +    +  K  
Sbjct: 235 E--LKPFEEVKDKIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEFKET 286



 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 136 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFG 195

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  EEV   
Sbjct: 196 PGQTVKEFEEAAYKLNAGQVSEPVKTSY--------GYHIIKVTDKKE--LKPFEEVKDK 245

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V +  K+
Sbjct: 246 IRKDLEQQRLQDTTGKWKQQVVNDLLKD 273



 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 155 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFGPGQTVKEFEEAAYKLNAGQ 214

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P +E KDK    L Q   +D        V+  L    
Sbjct: 215 VSEPVKTSYGYHIIKVTDKKELKPFEEVKDKIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 274

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 275 DIKVNDK 281


>gi|94967188|ref|YP_589236.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549238|gb|ABF39162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 317

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 113/365 (30%), Gaps = 81/365 (22%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V   K+        +K ++    Q+          ++  L   IL  L++   L Q  
Sbjct: 2   ARVNGHKITRPEVEKYYKNQIAGSPQQ------PSDEQADNLRLNILRELINNEILMQRA 55

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
           E +GL A    V  ++  +         +S + F +RL   GI   ++     + ++   
Sbjct: 56  EKLGLLATDEEVDSKVNAAKA------PYSQEQFDARLKERGITMDDFRRDLRRSITIDK 109

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           V+                                  + + +  + S+  ++ ++  +K  
Sbjct: 110 VIN---------------------------------KEITSKINVSDGDISSYYNAHKAE 136

Query: 224 YRAPE-YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
           +   E    ++ IL               +++   + N +                 +K+
Sbjct: 137 FNLIEPQYHMAQILVTPQPNP--------QVKNLQKANND--------------AEAKKK 174

Query: 283 ADEAFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
             +    L  G+ F  +A    +    S +   LG   +  +    LA    +  K G +
Sbjct: 175 IQQLVNRLDSGEDFASVAMNYSEQPEISPNGGDLGFIPESSLKGDKLAFDAVARLKPGQY 234

Query: 339 TPVI-------HGSFGYVIAHVSNIKPSFTVSFQE--VKKDIANQMRITKASEKVKEDYK 389
           T V+           GY I  +   + S      +  V++ I  Q+R  +        Y+
Sbjct: 235 TGVLPIVDPSNKQVLGYRILKLIAKESSGQRELNDPRVQQAIREQLRDGREQLLKAAYYE 294

Query: 390 RLEEF 394
            + + 
Sbjct: 295 SVRDK 299


>gi|90567994|dbj|BAE92208.1| peptidyl-prolyl cis-trans isomerase C [Flavobacterium
           psychrophilum]
          Length = 701

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 91/621 (14%), Positives = 194/621 (31%), Gaps = 58/621 (9%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L  IR+  ++++    + +    F+I  L +       +    ++    + F  F     
Sbjct: 4   LSKIRQ--KSFLVIAVVGIALFAFIIGALIENGGFGKTARNAGTINGVDISFEEFREKVD 61

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                   + G  +   +A +      + D  V    L++  E +GL     ++   I  
Sbjct: 62  M---AQKSQPGQNMTIMQATN-----GVWDQEVRRVLLEKQCEKLGLRIGDDQLINIIKE 113

Query: 122 SPLFH------GKDNKFSHDVF-VSRLAREGINEKEY------IDHYTKMLSRTDVVGMF 168
            P F           KF    F  + L+ +  + +++           +         M 
Sbjct: 114 DPQFAQTPQFLNAAGKFDKAKFNEALLSLKKGSPEQWGKWLEDEKRIMQSTKEQMYSTMI 173

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAP 227
             G   +               + D + +    +     +P++A L  + +K +  Y+A 
Sbjct: 174 QSGFYTTQAEAKFNYELENNKVTFDVVSVPYSTIEDKKVEPTDAELIAFMKKDEKKYKAD 233

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E + + Y+  +     +  +I  D++        +               P     +EA 
Sbjct: 234 ESRELEYVFVEDKASAEDKKIIEDKVNGLLNPVADN--------------PVTTTVNEAR 279

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
              K     ++          D +    SK+ +P V  A+++F+LA  G F         
Sbjct: 280 VGFKNASNLVEFVNANSDIKYDST--YVSKKDLP-VEHAEALFNLA-PGQFYGPYMFGDY 335

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y I      K +           I      T+   K ++  K   +  A+      ++  
Sbjct: 336 YGITKNLGRKVNANAK----ASHILISYEGTQVPNKKEKRTKEQAKAKAVSLLAQVLANP 391

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
                +     D +     G        +    F  F   +P+ K   V    G ++   
Sbjct: 392 SAFQMLAYTNSDDSSSQQGGDLGYFSQGQMVKPFNNFVFSNPVGKIGLVETDFGFHIINV 451

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
             +    R   L +      K   +  T+++V + A +   E +   K F    K +   
Sbjct: 452 TDKQDAVRLATLAQ------KISPSEVTSDKVFTTATKF--EMAANEKAFDVAAKEMKLI 503

Query: 528 LLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYV-VFKVTNSKVGPV 584
           +    ++  +D   +  G   + +  VF      +K F I  G     + KV  + + P+
Sbjct: 504 VAPAAKLLALDENVQGIGNQREIVRWVFGAKEGEIKRFNIPTGHVIARLKKVNEAGLLPI 563

Query: 585 QEKD-KFISYLTQMMNKDLLD 604
           +E      + L      +L+ 
Sbjct: 564 EEAKMAIGTKLRNEKKAELIK 584


>gi|149194292|ref|ZP_01871389.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Caminibacter
           mediatlanticus TB-2]
 gi|149135467|gb|EDM23946.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Caminibacter
           mediatlanticus TB-2]
          Length = 292

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 104/236 (44%), Gaps = 16/236 (6%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
           V G + +   ++   +    ++ +    L  +HV  +       LT + +K K     P+
Sbjct: 49  VNGKKITVAEINAYLQGITGDKRIKLQDLPAQHVKKLVKDYADTLTVYEKKAKSIENTPQ 108

Query: 229 YKRISYIL---FDVHEKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEAD 284
           +K     L     + ++   I+IS+ E +A YEKNK+ +F S        ++  ++K A 
Sbjct: 109 FKAAKMKLAVDMWLKKEFDNIKISDKEAKAFYEKNKDVFFKSTPQIKARHILVKDEKLAK 168

Query: 285 EAFQSLK--KG----KKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
           +    LK  KG    +KF +LA++       +    LG FS + +     A +  SL K 
Sbjct: 169 KLINELKGLKGKALEEKFAELAKKYSIGPSKVQGGELGWFSPKQMV-PEFAKAAESL-KP 226

Query: 336 GDFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+ T   +   FGY I  V   K +  + +++VK  I   ++  K  ++++   K+
Sbjct: 227 GEITLKPVKTRFGYHIILVEGKKSNTYIPYEKVKDQIIGYLKNQKLKKELETLKKQ 282


>gi|268679964|ref|YP_003304395.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617995|gb|ACZ12360.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 270

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 92/247 (37%), Gaps = 18/247 (7%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD-------PSNAVLTQW 216
           +       +   ++            +   +  L       I +        +   +   
Sbjct: 18  LNAAVYATVNGEDVTDQDIAVLMRAMQGAKFESLPADAKQKIVEQAVERKLLTKEAVKSG 77

Query: 217 FEKYKDNYRAPEYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
            EK K+   A +  +    L   + +    +++   E++  Y+KN +K+  P       +
Sbjct: 78  VEKEKEYTDALKRIKEDLSLELWMKKIYNNVKVDAKEVKDYYDKNADKFMQPATVKARHI 137

Query: 276 VFPNQKEADEAFQSL------KKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLA 326
           +  +++EA  A + L      K   KF++LA  +    S      LG F+   +     A
Sbjct: 138 LVKSEEEAKAAIKELSGLSGQKLNDKFVELATTKSTGPSGQGGGDLGWFAANQMVKP-FA 196

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           D+ F+L K       +   FG+ +  V + K +   SF+ VK  I N +++ K   +V  
Sbjct: 197 DAAFALKKGEYTKSPVQTQFGFHVILVEDTKAAEKASFEMVKPQIENGLKMEKFRVEVAN 256

Query: 387 DYKRLEE 393
             ++L +
Sbjct: 257 KAQKLRQ 263


>gi|210620911|ref|ZP_03292328.1| hypothetical protein CLOHIR_00271 [Clostridium hiranonis DSM 13275]
 gi|210155123|gb|EEA86129.1| hypothetical protein CLOHIR_00271 [Clostridium hiranonis DSM 13275]
          Length = 260

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 82/190 (43%), Gaps = 16/190 (8%)

Query: 228 EYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---- 282
           E   I+ +    +++       + +E +A Y+++++++   E+     ++   + E    
Sbjct: 73  EQVTINMLKQHALNQLFMAAMPTEEEAKAYYDEHQDEFKVDEMAKARHILIKAENEDEFA 132

Query: 283 -----ADEAFQSLKKGKK-FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333
                A E  + +K G+K F Q A +     S      LG F K  +      +++FS+ 
Sbjct: 133 AAEARAKEIAEEIKAGEKTFEQAAIDYSDCPSNMQGGDLGLFGKGQMV-PEFEEAVFSM- 190

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            +G+ +  +  SFGY +  V     +    F+EVK +I  ++   K  +  ++    L E
Sbjct: 191 NEGELSEPVKTSFGYHLIKVEERHKAGVSKFEEVKDEILGKLAQLKQLKAYEDKVAELRE 250

Query: 394 FLALGTSMDE 403
             A   ++++
Sbjct: 251 KYASAYTLND 260


>gi|27375316|ref|NP_766845.1| hypothetical protein blr0205 [Bradyrhizobium japonicum USDA 110]
 gi|27348452|dbj|BAC45470.1| blr0205 [Bradyrhizobium japonicum USDA 110]
          Length = 323

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 5/155 (3%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
             E K   + D ++  YE+  ++    +      ++   + EA      L KG  F +LA
Sbjct: 136 ANEGKAATTPDAMKKVYEEASKQITGEQEVRARHILVETEDEAKAVKAELDKGADFAELA 195

Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +++ K         LG F+KE +     +   F+L + G  +  +   FG+ I  V   +
Sbjct: 196 KKKSKDPGSADGGDLGFFTKEQMV-PEFSAVAFAL-EPGKISDPVKSQFGWHIIKVEEKR 253

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                 F++VK  I   +     ++ V +     +
Sbjct: 254 NRKAPDFEQVKAQIEQYVTRKAQADYVAKLRTEAK 288



 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 53/143 (37%), Gaps = 4/143 (2%)

Query: 477 RKLEEVLTDV--KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
           +  EE    +  +++ +      E   +A  +  E  K G +F ++ K       + +  
Sbjct: 150 KVYEEASKQITGEQEVRARHILVETEDEAKAVKAELDK-GADFAELAKKKSKDPGSADGG 208

Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
           +      +    +  +  F+     +   P+++   + + KV   +     + ++  + +
Sbjct: 209 DLGFFTKEQMVPEFSAVAFALEPGKI-SDPVKSQFGWHIIKVEEKRNRKAPDFEQVKAQI 267

Query: 595 TQMMNKDLLDSVIAYLKSQYSVT 617
            Q + +      +A L+++  V 
Sbjct: 268 EQYVTRKAQADYVAKLRTEAKVE 290


>gi|328465802|gb|EGF36990.1| protein export protein [Listeria monocytogenes 1816]
          Length = 266

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 83/207 (40%), Gaps = 26/207 (12%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247
           +      S+  + + F +YK  Y                    ++ Y L      E   +
Sbjct: 62  LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 121

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  YE      + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     
Sbjct: 122 TSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175

Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G     + P   D +   + ++L  KGD +  +   +GY I  +   KP+   +F
Sbjct: 176 ATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233

Query: 365 QEVKKDIANQ-MRITKASEKVKEDYKR 390
           ++ KK +    +     +E +++  K+
Sbjct: 234 EKDKKAVKASYLESQLTTENMQKTLKK 260


>gi|239832961|ref|ZP_04681290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
           intermedium LMG 3301]
 gi|239825228|gb|EEQ96796.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
           intermedium LMG 3301]
          Length = 456

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 90/244 (36%), Gaps = 12/244 (4%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R   E R +  +      +   A    A   +  ++ K+     E+ R   +  +  
Sbjct: 212 QFSRLPAEQRRLAAL---AALIDIKAMAGEAEKEKL-DQSKEFKDRMEFLRERALHNEYF 267

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +     +IS+D+++A Y+K               ++   ++EA+   + L  G KF  LA
Sbjct: 268 KDAVVDKISDDDVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLAGGAKFEDLA 327

Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +E    G + +   LG F++  +       + F+L         +   FG+ +  + + +
Sbjct: 328 KESSTDGTASNGGDLGYFTEGQMV-PEFEKAAFALKPGEYTKEPVQSQFGFHVIQLEDRR 386

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK----RLEEFLALGTSMDEISRREKIVSI 413
                +F +VK  I + +   +  E VK+         ++        D  + +E     
Sbjct: 387 TKQPPAFDQVKDQIRSIIMRERYVETVKKLRDGMKIDYKDPAVEKAMKDAAAAQEGADKD 446

Query: 414 DLPL 417
           D P 
Sbjct: 447 DAPE 450



 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/159 (8%), Positives = 54/159 (33%), Gaps = 3/159 (1%)

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
            +     D+++  +   V+   + +    +  ++A   +++    G  F D+ K      
Sbjct: 278 DDVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLAGGAKFEDLAKESSTDG 334

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
             +N  +           +     F+         P+++   + V ++ + +       D
Sbjct: 335 TASNGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPVQSQFGFHVIQLEDRRTKQPPAFD 394

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           +    +  ++ ++     +  L+    +   D  +++ +
Sbjct: 395 QVKDQIRSIIMRERYVETVKKLRDGMKIDYKDPAVEKAM 433



 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 70/225 (31%), Gaps = 25/225 (11%)

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
            P ++    A  +L   K     AE++    S         E++ + +L +  F  A   
Sbjct: 216 LPAEQRRLAALAALIDIKAMAGEAEKEKLDQSKEFKDRM--EFLRERALHNEYFKDAVVD 273

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
             +               +++  +      +   +  ++R      K KE+ + + + LA
Sbjct: 274 KISD-------------DDVRARYDKEIAAMPPQV--EVRARHILVKTKEEAEAIIKKLA 318

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
            G   +++++               G      E   +P  E+  F +     P       
Sbjct: 319 GGAKFEDLAKESS----TDGTASNGGDLGYFTEGQMVPEFEKAAFAL----KPGEYTKEP 370

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
                 +  +Q+++    +    ++V   ++      +  E V  
Sbjct: 371 VQSQFGFHVIQLEDRRTKQPPAFDQVKDQIRSIIMRERYVETVKK 415


>gi|164688476|ref|ZP_02212504.1| hypothetical protein CLOBAR_02121 [Clostridium bartlettii DSM
           16795]
 gi|164602889|gb|EDQ96354.1| hypothetical protein CLOBAR_02121 [Clostridium bartlettii DSM
           16795]
          Length = 250

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 67/162 (41%), Gaps = 6/162 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298
           ++    ++++++E QA YE NK  + +PE    + ++  ++++A+E    +K G   F  
Sbjct: 86  NQILTSVKLTDEEKQAFYEANKTNFSNPETANAKHILVDSEEKANEILAQIKAGDVTFED 145

Query: 299 LAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
            A       S      LG+F +  +      ++ F++   GD +  +   FGY +  +  
Sbjct: 146 AARANSTCPSKDQGGDLGTFGRGQMV-PEFEEATFAM-NVGDVSEPVKTQFGYHLIKLEA 203

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
                  +++E+   +   +   K  E  K     ++     
Sbjct: 204 KNEPSIPAYEEIADKVEKTLMFQKQGEVYKNKLDEVKAKFGD 245


>gi|91776502|ref|YP_546258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
           flagellatus KT]
 gi|122070650|sp|Q1GZC0|SURA_METFK RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|91710489|gb|ABE50417.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
           flagellatus KT]
          Length = 437

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/434 (11%), Positives = 131/434 (30%), Gaps = 63/434 (14%)

Query: 21  LFVPFLIWGLSDALFSVSG-SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           L   F  + +S     V+     V  V +  +      +  +  +  + ++ G  +    
Sbjct: 14  LIALFFFFSISAMAAEVAKMDRIVAIVDQGVITEKELEDRIQTVIAQLEKQ-GTQLPPRD 72

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                L K+IL+ L++     Q+    GL  D  ++   I R      + NK S   F  
Sbjct: 73  V----LQKQILERLINDRLQLQYAAQTGLRVDDAQLDKTIERI----AEQNKLSTGEFRK 124

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSV-DYIVL 197
            L  EGI  +++ +     +    +        +  +   +D           + D   +
Sbjct: 125 ALEAEGIPYRKFREDIRNEIILARLREREVDNRVNVTESEIDNFLTTQSSRNDIQDEFEV 184

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPE------YKRISYILFD-----------VH 240
            +  + A  + +   L +   K +   +  +           Y                 
Sbjct: 185 AHILIRAPEESTPEELQKLKAKAEAALKELQSGADFAQVSAGYSDAPNALEGGILGWKAS 244

Query: 241 EKEKKIEISNDE-------------------LQAEYEKNKEKYFSPEIRTVEQLVFP--- 278
            +   + +   +                   L+    +        +   V  ++     
Sbjct: 245 SQLPSLFVDALQALQPGQLSPVLRSPNGYHILKLLNRRGGSSPLVVDQTHVRHILIKLSE 304

Query: 279 ------NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSI 329
                  +++ +   + L  G  F +LA +  +  S      LG  +       +   ++
Sbjct: 305 VVSELEAEQKINSIKERLDHGADFAELARQYSEDASANNGGDLGWTNAGDTV-PAFEKAM 363

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
            +L    + +  +   FG+ I  V   +    ++ +  +     ++R  KA +  ++   
Sbjct: 364 NALDIN-EISAPVRTPFGWHIIQVLERRK-QDMTQESARLKARQEIRARKADDAFQDWLS 421

Query: 390 RLEEFLALGTSMDE 403
            L +   +   +++
Sbjct: 422 ELRDRAYVEYRLED 435



 Score = 74.6 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/382 (14%), Positives = 112/382 (29%), Gaps = 62/382 (16%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
           R  +      G+R  +  LD+      E   +                            
Sbjct: 86  RLQLQYAAQTGLRVDDAQLDKTIERIAEQNKLSTGEFRKALEAEGIP------------- 132

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN- 279
              +R      I        E + ++ ++  E+         +    +   V  ++    
Sbjct: 133 YRKFREDIRNEIILARLREREVDNRVNVTESEIDNFLTTQSSRNDIQDEFEVAHILIRAP 192

Query: 280 -----------QKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSL 325
                      + +A+ A + L+ G  F Q++     +   L    LG  +   +P +  
Sbjct: 193 EESTPEELQKLKAKAEAALKELQSGADFAQVSAGYSDAPNALEGGILGWKASSQLPSL-F 251

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---VKKDIANQMRITKASE 382
            D++ +L + G  +PV+    GY I  + N +   +    +   V+  I  ++    +  
Sbjct: 252 VDALQAL-QPGQLSPVLRSPNGYHILKLLNRRGGSSPLVVDQTHVR-HILIKLSEVVSEL 309

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
           + ++    ++E L  G    E++R+                           Y E     
Sbjct: 310 EAEQKINSIKERLDHGADFAELARQ---------------------------YSEDASAN 342

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
             G     +   TV   + +   + I E            +  V +  K   T E    K
Sbjct: 343 NGGDLGWTNAGDTVPAFEKAMNALDINEISAPVRTPFGWHIIQVLERRKQDMTQESARLK 402

Query: 503 ANQLVLEYSKEGKNFRDIGKNL 524
           A Q +    K    F+D    L
Sbjct: 403 ARQEI-RARKADDAFQDWLSEL 423


>gi|182420516|ref|ZP_02643225.2| foldase protein PrsA [Clostridium perfringens NCTC 8239]
 gi|182624265|ref|ZP_02952050.1| foldase protein PrsA [Clostridium perfringens D str. JGS1721]
 gi|177910483|gb|EDT72856.1| foldase protein PrsA [Clostridium perfringens D str. JGS1721]
 gi|182380295|gb|EDT77774.1| foldase protein PrsA [Clostridium perfringens NCTC 8239]
          Length = 325

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 120/358 (33%), Gaps = 78/358 (21%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL---DKKILDNLVS 95
             +TV +V  +K+      +  K     +  + G     +   +  +    + ++ +LV+
Sbjct: 18  DKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVAQQILQQRQSVVQSLVT 77

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L    + +G++     +  ++     F         D F   L  EG  E  +    
Sbjct: 78  DKVLVAEADKLGIKPSEEDIKKKV--DEQFENIKKGM-GDNFDKALEAEGYTEDTF---- 130

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            K   +  V+                         +V+Y              S+  + +
Sbjct: 131 -KEFLKNQVIA----------------------EATVEYAT-------KDVKVSDEDIKK 160

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++++ K  +       + ++LF           + +E Q  Y++ +    +         
Sbjct: 161 YYDENKQQFVVKAGADVKHLLFP----------TEEEAQKAYDEIQSGKTTF-------- 202

Query: 276 VFPNQKEADEAFQSLKKGKKF--IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
                   D+ F   +K K      +AE  G+   D +  +F K+++             
Sbjct: 203 --------DDLFNKYEKNKDPKKEPIAENLGR--VDYNNSNFDKDFMEG-------LKGL 245

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKR 390
           K G+ +  +  SFGY I   +NI    T  + ++ K+ I + +   K  E  ++D ++
Sbjct: 246 KDGEISKPVKSSFGYHIIKATNITDKETQLTEEQAKEQIISILENQKKKEAYQKDLEQ 303


>gi|146296230|ref|YP_001180001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409806|gb|ABP66810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 335

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 114/359 (31%), Gaps = 81/359 (22%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGM--ISQKIGFVVNSERARSVGLDKKILDNLV 94
           +  +  V  V  +K+    F  ++K ++    + +         +     + + +LD L+
Sbjct: 32  IDENRAVAIVNGEKITKKEFSINYKSQIDYYGLDKAFLAQKVGSKTYEEQIKENVLDGLI 91

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
                 Q  +   +               +   K++  +   F   L   G  E EY D 
Sbjct: 92  VRQIELQQAKKRNIILTAQEKKA--IEDQINQYKNDPQNGLQFKQYLQTIGATEDEYKDQ 149

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
             K    + +          S                                     + 
Sbjct: 150 IIKSQIVSKLFNELTKNQTASMF----------------------------------EIE 175

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
            ++  +K +Y      + S+ILF         ++S+                       +
Sbjct: 176 SYYNSHKTDYI---KVKASHILF---------KVSD----------------------SK 201

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIF 330
                +K+A+E  Q +K G+ F +LA++  +          LG F K  +      D  F
Sbjct: 202 EETTKKKKAEEVLQMIKNGQNFEKLAKKYSEDENTKQKGGDLGYFRKGEMVK-EFEDVAF 260

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           SL   G+ + ++  S+G+ I  V++ K    ++  +VK +I + +   K  +  +   +
Sbjct: 261 SLG-IGEISGIVKTSYGFHIIKVTDRK---QLALNDVKDEIKSTIETQKKQQYFQSLIE 315


>gi|300853330|ref|YP_003778314.1| putative foldase-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300433445|gb|ADK13212.1| putative foldase related protein [Clostridium ljungdahlii DSM
           13528]
          Length = 247

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 5/155 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +   K+ +++ E Q  YE NK+ Y  PE    + ++  + ++A +  + + +G  F + 
Sbjct: 86  SKVMNKVNVTDKESQDYYEANKDMYKKPERLKAKHILVDSIEKAKKISKEISEGMPFEEA 145

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++     S     SLG F++  +      ++ FSL      +  +   FGY +  V   
Sbjct: 146 AQKYSTCPSKAQGGSLGEFARGQMV-PEFENAAFSL-DIDVVSEPVKTQFGYHLIKVEEK 203

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                 S+ EVK  I N +   +   +  +  K L
Sbjct: 204 IEPSIASYDEVKNAIKNGLLQERQKYEYSKFNKEL 238


>gi|148269160|ref|YP_001243620.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
           petrophila RKU-1]
 gi|170287822|ref|YP_001738060.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga sp. RQ2]
 gi|281411458|ref|YP_003345537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
           naphthophila RKU-10]
 gi|147734704|gb|ABQ46044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
           petrophila RKU-1]
 gi|170175325|gb|ACB08377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga sp. RQ2]
 gi|281372561|gb|ADA66123.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
           naphthophila RKU-10]
          Length = 329

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/395 (12%), Positives = 122/395 (30%), Gaps = 86/395 (21%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS--SFINSWKQELGMISQKIGF 73
           IF++++ +   ++G +    + + S+ V  V    +              L  I+Q    
Sbjct: 5   IFVILVVLGISLFGQA----TTTSSTVVAIVNGNPITSDLLELEADIDGILRSIAQIDLR 60

Query: 74  VVNSERARSVGLD------KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
             N       GL       +++L++L+    + Q  E  G+      V  E+        
Sbjct: 61  FFNVLTGTEEGLKLLLKYKQEVLNSLIDDLLVQQLAEKEGVGVSDEEVKKEV-------- 112

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
                        +   GI  ++      +             G         +      
Sbjct: 113 ------EARLKETVETMGITLEDLDKFLQR------------AGYGDLESFKKRLHWHMK 154

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
              S+  +      +   A  +      ++ + K+ YR P    +               
Sbjct: 155 TQLSLQRL---QEKITQNATVTLEEAQNYYNQNKETYRIPAAVHLY-------------- 197

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
                                     ++   ++ + DEA   ++KG+ F+++A +     
Sbjct: 198 --------------------------RITTEDKSKMDEALSKIRKGEDFLEVATQV---A 228

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           +   LG   +  + +  +   IF   + G           +V+  V   + S    F+EV
Sbjct: 229 TGGDLGWIEEGKL-EKDIESVIFDAPE-GAILGPFESEGKFVLYKVVEKRSSSYKKFEEV 286

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
           K++I +++   K ++   + + ++ E     + ++
Sbjct: 287 KQEIMDKLLADKKNQLWNDWFNKVFEEFKKNSQIE 321


>gi|319899225|ref|YP_004159318.1| peptidyl-prolyl cis-trans isomerase [Bartonella clarridgeiae 73]
 gi|319403189|emb|CBI76748.1| peptidyl-prolyl cis-trans isomerase [Bartonella clarridgeiae 73]
          Length = 317

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 61/149 (40%), Gaps = 4/149 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           +I++ +++A Y+K        +      ++   ++EA+   + L KG+ F ++A++    
Sbjct: 137 KIADADVKALYDKEIAALPKEDEIKARHILVKTKEEAEAVIKRLNKGENFEEVAKKDSTD 196

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG FS+  +      ++ F+L         +   FG+ +  V + +      
Sbjct: 197 GSSAVGGDLGYFSRGQMVKP-FEEAAFNLKVNEYTKKPVESPFGWHVIKVEDRRLKQPPV 255

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
           F +VK  +  Q+   +    + +    + 
Sbjct: 256 FDDVKDVLRTQLIRERYQTLIPDLRSEVN 284


>gi|170764243|ref|ZP_02639032.2| foldase protein PrsA [Clostridium perfringens CPE str. F4969]
 gi|170714999|gb|EDT27181.1| foldase protein PrsA [Clostridium perfringens CPE str. F4969]
          Length = 325

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 119/358 (33%), Gaps = 78/358 (21%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL---DKKILDNLVS 95
             +TV +V  +K+      +  K     +  + G     +   +  +    + ++  LV+
Sbjct: 18  DKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVAQQILQQRQSVVQGLVT 77

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L    + +G++     +  ++     F         D F   L  EG  E  +    
Sbjct: 78  DKVLGIEADKLGIKPSEEEIKKKV--DEQFENIKKGM-GDNFDKALEAEGYTEDTF---- 130

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            K   +  V+                         +V+Y              S+  + +
Sbjct: 131 -KEFLKNQVIA----------------------EATVEYAT-------KDVKVSDEDIKK 160

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++++ K  +       + ++LF           + +E Q  Y++ +    +         
Sbjct: 161 YYDENKQQFVVKAGADVKHLLFP----------TEEEAQKAYDEIQSGKTTF-------- 202

Query: 276 VFPNQKEADEAFQSLKKGKKF--IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
                   D+ F   +K K      +AE  G+   D +  +F K+++             
Sbjct: 203 --------DDLFNKYEKNKDPKKEPIAENLGR--VDYNNSNFDKDFMEG-------LKGL 245

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKR 390
           K G+ +  +  SFGY I   +NI    T  + ++ K+ I + +   K  E  ++D ++
Sbjct: 246 KDGEISKPVKSSFGYHIIKATNITDKETQLTEEQAKEQIISILENQKKKEAYQKDLEQ 303


>gi|241763440|ref|ZP_04761494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
 gi|241367382|gb|EER61703.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
          Length = 247

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 81/183 (44%), Gaps = 11/183 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGK 294
            +      ++  + +  Y+   +++ +PE   V  ++        + +A++  + LK G 
Sbjct: 66  KDSAPSDAVAEGQARNIYKAKPDRFQAPEQVQVRHILIAGTDGGARAQAEKVLEELKAGA 125

Query: 295 KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            F QLA+E+            LG F++  +      ++ F+L + GD + ++   FG+ I
Sbjct: 126 DFAQLAKERSADTGSGAKGGDLGLFARGRMV-PEFDEAAFALKQPGDLSGIVETKFGFHI 184

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRREK 409
             +   +P+    ++EV++++  ++R     +    + +++++ L     +++  +   K
Sbjct: 185 LKLDARRPAGLRPYEEVREELIKEVRGKLQQDARVAEAEKVQQGLTINNEAIEAFAATHK 244

Query: 410 IVS 412
              
Sbjct: 245 AAP 247



 Score = 39.2 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 7/144 (4%)

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
            +   +++ E L  G    ++++     +         G   +G+ V             
Sbjct: 110 ARAQAEKVLEELKAGADFAQLAKERSADTGSGAKGGDLGLFARGRMVPEFDE------AA 163

Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
           F    P      V    G +  +++    PA  R  EEV  ++ K+ +     +   ++A
Sbjct: 164 FALKQPGDLSGIVETKFG-FHILKLDARRPAGLRPYEEVREELIKEVRGKLQQDARVAEA 222

Query: 504 NQLVLEYSKEGKNFRDIGKNLGAS 527
            ++    +   +          A+
Sbjct: 223 EKVQQGLTINNEAIEAFAATHKAA 246


>gi|150026459|ref|YP_001297285.1| hypothetical protein FP2430 [Flavobacterium psychrophilum JIP02/86]
 gi|149773000|emb|CAL44484.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 701

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 91/621 (14%), Positives = 193/621 (31%), Gaps = 58/621 (9%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L  IR+  ++++    + +    F+I  L +       +    ++    + F  F     
Sbjct: 4   LSKIRQ--KSFLVIAVVGIALFAFIIGALIENGGFGKTARNAGTINGVDISFEEFREKVD 61

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                   + G  +   +A +      + D  V    L++  E +GL     ++   I  
Sbjct: 62  M---AQKSQPGQNMTIMQATN-----GVWDQEVRRVLLEKQCEKLGLRIGDDQLINIIKE 113

Query: 122 SPLFH------GKDNKFSHDVF-VSRLAREGINEKEY------IDHYTKMLSRTDVVGMF 168
            P F           KF    F  + L+ +  + +++           +         M 
Sbjct: 114 DPQFAQTPQFLNAAGKFDKAKFNEALLSLKKGSPEQWGKWLEDEKRIMQSTKEQMYSTMI 173

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAP 227
             G   +               + D + +    +     +P++A L  + +K +  Y+A 
Sbjct: 174 QSGFYTTQAEAKFNYELENNKVTFDVVSVPYSTIEDKKVEPTDAELIAFMKKDEKKYKAD 233

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E + + Y+  +        +I  D++        +               P     +EA 
Sbjct: 234 ESRELEYVFVEDKASAVDKKIIEDKVNGLLNPVADN--------------PVTTTVNEAR 279

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
              K     ++          D +    SK+ +P V  A+++F+LA  G F         
Sbjct: 280 VGFKNASSLVEFVNANSDIKYDST--YVSKKDLP-VEHAEALFNLA-PGQFYGPYMFGDY 335

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           Y I      K +           I      T+   K ++  K   +  A+      ++  
Sbjct: 336 YGITKNLGRKVNANAK----ASHILISYEGTQVPNKKEKRTKEQAKAKAVSLLAQVLANP 391

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
                +     D +     G        +    F  F   +P+ K   V    G ++   
Sbjct: 392 SAFQMLAYTNSDDSSSQQGGDLGYFSQGQMVKPFNNFVFSNPVGKIGLVETDFGFHIINV 451

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
             +    R   L +      K   +  T+++V + A +   E +   K F    K +   
Sbjct: 452 TDKQDAVRLATLAQ------KISPSEVTSDKVFTTATKF--EMAANEKAFDVAAKEMKLI 503

Query: 528 LLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYV-VFKVTNSKVGPV 584
           +    ++  +D   +  G   + +  VF      +K F I  G     + KV  + + P+
Sbjct: 504 VAPAAKLLALDENVQGIGNQREIVRWVFGAKEGEIKRFNIPTGHVIARLKKVNEAGLLPI 563

Query: 585 QEKD-KFISYLTQMMNKDLLD 604
           +E      + L      +L+ 
Sbjct: 564 EEAKMAIGTKLRNEKKAELIK 584


>gi|228915458|ref|ZP_04079047.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228844105|gb|EEM89165.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 280

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 84/237 (35%), Gaps = 27/237 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNA--VLTQ 215
           S  ++V    G +  S+      + +  +N S  V   VLN+++     + +     L  
Sbjct: 24  SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKATDEEVTKQIKELKT 83

Query: 216 WFEKYKDNYR------APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
                 + Y         +  +    L    EK  K  ++  E++  Y+           
Sbjct: 84  KMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKEIKDHYK---------PK 134

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSL 325
                ++  ++K A E  + L  G+ F  LA++  +          L  F    +     
Sbjct: 135 LQASHILVKDEKTAKEIKEKLNNGEDFAALAKQYSEDPGSKEKGGDLSEFGPGMMVK-EF 193

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            D+ + L + G  +  I  SFGY I  ++  K      ++E K +I  ++   +  +
Sbjct: 194 EDAAYKL-EVGQVSEPIKSSFGYHIIKLTGKKE--LKPYEEEKVNIRKELEQQRIQD 247


>gi|222100637|ref|YP_002535205.1| Basic membrane protein [Thermotoga neapolitana DSM 4359]
 gi|221573027|gb|ACM23839.1| Basic membrane protein [Thermotoga neapolitana DSM 4359]
          Length = 329

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/396 (14%), Positives = 120/396 (30%), Gaps = 85/396 (21%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS--SFINSWKQELGMISQKIG 72
           K+FLV+L V    +    +  + + S+ V  V  Q +              L  I+Q   
Sbjct: 3   KVFLVILLVTTATF---FSQATTTSSTVVAIVNGQPITSDLLELEADINGILKSIAQIDM 59

Query: 73  FVVNSERARSVGLD------KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
              N       GL        ++L++L+    + Q  E  G+      V  E+       
Sbjct: 60  RFFNVLTGTEEGLRLLLKYKMEVLNSLIDDLLIQQLAEKEGVGVTDEEVNAEV------- 112

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
                         +   GI  ++                    G         + K   
Sbjct: 113 -------EKRLKETVESMGITLEDLDKFLQ------------SAGYGDLETFKKRLKWHL 153

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
               S+  +      +   A  +      ++ + K+ YR P    +              
Sbjct: 154 KTQLSLQRL---QEKITQDATVTVEEAQNYYNQNKEAYRVPAAVHLY------------- 197

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
                                      ++    + + DEA   ++KG+ F+++A +    
Sbjct: 198 ---------------------------RISAEEKGKIDEALSRIRKGEDFLEVATKV--- 227

Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
            +   LG   +  + +  L   IF   + G          G+++  V   + S    F+E
Sbjct: 228 ATGGDLGWIEEGEL-EKDLESVIFEAPE-GAILGPFESKGGFMLYKVVEKRASSYKKFEE 285

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
           VK++I N++   K ++   + + +  E     + ++
Sbjct: 286 VKEEIINKLLSEKKAQIWNDWFNKTFEEFKKNSHIE 321


>gi|284046681|ref|YP_003397021.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei
           DSM 14684]
 gi|283950902|gb|ADB53646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei
           DSM 14684]
          Length = 390

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/399 (13%), Positives = 130/399 (32%), Gaps = 54/399 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  + K  R  +A     VL       G  D   +   S+ V SV    +  + +    
Sbjct: 1   MLSSVTKTLRIVLALCAFFVLSFTVAACGGDDESGNDVPSNAVASVDGTPITKADYERWA 60

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE--ADHGRVWGE 118
                    +   V+  +       ++ I       A L++   D          ++  +
Sbjct: 61  LINAKSPGAQGSPVIIPDP---PNYERCI-------AALERQSRDARARTTPSDSQLRAQ 110

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
             +                          E + +     +L + D +      +  S   
Sbjct: 111 CRQV-------------------------ETQIMQQSMALLIQADWIEKEADELGVSVSD 145

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            D  +      R       +       +  +   +          +R     +       
Sbjct: 146 ADVQRTLEETKRQSFPRRGDYESFLRRSGMTERDI---------LFRL--RIQDLSTRIT 194

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
              + +  ++++ ++ A Y +N++++  PE R +E ++   + +A+EA ++++ G  +  
Sbjct: 195 EKIQREAGDVTSAQITAYYNRNRDQFAVPERRDLEIILTRTEAQANEAKRAIESGTSWAA 254

Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            A           +   L   ++    D +L  + F+ A+       + G FG+ I  V+
Sbjct: 255 AARRYSTDALSKGNGGRLLGVARGQQ-DRALDTAAFN-ARTDVIVGPVRGQFGWYIVRVT 312

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            + P+   S  E ++ I   +R   +S K+ +  +  +E
Sbjct: 313 RVTPAKQNSLAESREQIRELLRQQGSSRKLNDFAREFQE 351



 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 18/147 (12%)

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
           ++D+   +  T+A           +  +  GTS    +RR    ++            +G
Sbjct: 225 RRDLEIILTRTEAQ------ANEAKRAIESGTSWAAAARRYSTDALSKGNGGRLLGVARG 278

Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW--VQIKESIPARDRKLEEVLTD 485
           ++         L    F        D  V    G + W  V++    PA+   L E    
Sbjct: 279 QQ------DRALDTAAFNA----RTDVIVGPVRGQFGWYIVRVTRVTPAKQNSLAESREQ 328

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSK 512
           +++  +   ++ +++  A +    ++K
Sbjct: 329 IRELLRQQGSSRKLNDFAREFQERWTK 355


>gi|157164251|ref|YP_001467105.1| holo-[acyl-carrier-protein] synthase [Campylobacter concisus 13826]
 gi|112801387|gb|EAT98731.1| foldase protein PrsA [Campylobacter concisus 13826]
          Length = 272

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 98/241 (40%), Gaps = 23/241 (9%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++   + G   S L  ++ KR   +  +   ++ + +      D        + +  K  
Sbjct: 39  LLSAAMPGFDASKLQPNEKKRIIDDLINRKLLLKDAKASGIEKDVD------YIKAVKA- 91

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
             A E   +   +    +    I++S+ +L+  Y KNK     P       ++  ++K A
Sbjct: 92  --AQEGIAVELYM---RKLFDGIKVSDSDLRDFYNKNKASMNQPAQARARHILVEDEKTA 146

Query: 284 DEAFQSLKK------GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
           ++    LK        KKF +LA     ++G +     LG F +  +     AD+ FS+A
Sbjct: 147 NDIIAQLKNLKGEVLTKKFAELASQKSIDKGSAAHGGELGWFGQSQMVKP-FADAAFSMA 205

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                T  +   FGY +    + K + TVSF++ K +I   +++ K    V++  + L +
Sbjct: 206 NGTVSTKPVKTQFGYHVILKEDGKAAGTVSFEQAKPEIEQAVKMEKFQAAVRQKSEALRQ 265

Query: 394 F 394
            
Sbjct: 266 K 266


>gi|297588598|ref|ZP_06947241.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516]
 gi|297573971|gb|EFH92692.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516]
          Length = 250

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 67/159 (42%), Gaps = 5/159 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
           F +      + +S+++L+  YE +K+ +      T   ++  ++  A+E  + +     F
Sbjct: 85  FAMANIINSVRVSDEDLKEYYENHKDNFKVQPTFTASHILVESEDLANEIKEKIDNDGDF 144

Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            +LA+E     S      LG+F +  +      +++    + GD    +   FGY I ++
Sbjct: 145 AELAKEYSTCPSKEQGGDLGTFQQGQMVK-EFENALIE-NEIGDIVGPVKTQFGYHIINI 202

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +       SF+E K ++   +   K  +   +   +L+
Sbjct: 203 KDKTEGKVKSFEEAKNEVKQTLLQLKQQQAYIDATDKLQ 241


>gi|254457621|ref|ZP_05071049.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Campylobacterales
           bacterium GD 1]
 gi|207086413|gb|EDZ63697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Campylobacterales
           bacterium GD 1]
          Length = 275

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 106/248 (42%), Gaps = 17/248 (6%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            +++ DV    +   +     +   K+  F  + ++ ++                   + 
Sbjct: 30  QITQQDVDTALMNATQGRFNQVPAEKQAEFRKQVLEQLIAKELVFGDAQKTGVLNSKDF- 88

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
              KD +   + +    +   V +K+   K+E+S+ EL+  Y+KNK+++   E      +
Sbjct: 89  ---KDEFVQVQERVKKELAIQVWQKQQLDKVEVSDKELKNYYDKNKDEFNEKETVHARHI 145

Query: 276 VFPNQKEADEAFQSLK--KGK----KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLA 326
           +   ++EA    +SLK  KG+    KFI+ A+ +    S      LG F++  +      
Sbjct: 146 LVKTEEEAKNIVKSLKSLKGEALKAKFIEEAKAKSTGPSGPKGGDLGYFAQGQMV-PEFN 204

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           D +F + K G  +  +   FGY + ++ + K   T++F EVK  I  ++++ K    +++
Sbjct: 205 DKVFGM-KVGTVSEPVKTQFGYHVIYLEDKKAKKTLAFTEVKSFIEQRLKMEKFKVVMQD 263

Query: 387 DYKRLEEF 394
               L+  
Sbjct: 264 KMLELKNK 271


>gi|254446719|ref|ZP_05060194.1| hypothetical protein VDG1235_67 [Verrucomicrobiae bacterium DG1235]
 gi|198256144|gb|EDY80453.1| hypothetical protein VDG1235_67 [Verrucomicrobiae bacterium DG1235]
          Length = 546

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/556 (11%), Positives = 161/556 (28%), Gaps = 63/556 (11%)

Query: 1   MLEIIRKASRT--WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
           M+  I+   +    +  I   VL V F++   +          T             F  
Sbjct: 1   MISWIQNKLQKHLLLVIIIFGVLIVAFVMQIGNMGPLGGGRERTA--------DLKFFDT 52

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNL-VSGATLDQFIEDIGL-EADHGRVW 116
               E      +    +++   R+     +   +L    AT+        + E     + 
Sbjct: 53  PLNTEAARARFQTDAQLSASLNRN----NRASGSLHFERATVLHIANQHSIPEPTKDELR 108

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGI----NEKEYIDHYTKMLSRTDVVGMFVGGM 172
             I   P F  +  +F    +   L    +     E +             V  +  G  
Sbjct: 109 QYIETLPAFQNQLGQFDAQAYNMALDSLRLGGGVTESDLHRVLVDDYRIAKVYSVLRGAG 168

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             +   + ++        S+    ++        + +  +L + +E +   Y+ PE + +
Sbjct: 169 FVNESEILESLGQRLATWSILLAEVDLGAYAPEIEITEEMLQKHYEDFSFTYQTPERRVV 228

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYF--------SPEIRTVEQLVFPNQKEAD 284
            YI  +  +  ++++ + D+L   +E N ++Y           E    E + F   + A 
Sbjct: 229 DYIEINASDFIEQVKPTEDQLITYFESNLDRYQPEPAEPAEGEEAEPEEPITFEEARLAV 288

Query: 285 EAFQSLKKGKKFIQ-------------------------LAEEQGKSLSDISLGSFSKEY 319
                +   ++                            LAE + K+ S  +        
Sbjct: 289 RNDYRITAAREIASERAHDLVVSIIENDFQHDSEGLATILAELELKTSSPFAANQTPIGT 348

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           +    + +  F L+ +  ++  +      ++   +N+      SF  ++  I + +R  +
Sbjct: 349 VWGRDVVEQAFELSTERFYSEPLQVENRSIVLFYNNVIAPIVPSFDTLRDKIISDVRAEE 408

Query: 380 ASEKVKEDYKRLEEFLALGTSMD-EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
             +   E    L+  L      +       +   + +   +        + +       +
Sbjct: 409 YRKVRAEYAVELKAKLEANADSEISFGAAAEEAGLSVTPFNEFTLVEPAEGL-----DRR 463

Query: 439 LLFRVFGKDDPLSKDHT-VALPDGSYMWVQIKESIPA---RDRKLEEVLTDVKKDWKTVK 494
            L  +   D     D   +   +       + + +P     D +  +V   +K  +    
Sbjct: 464 ALSSMLELDSKEVSDFIRLNGENQGAYLYVVSKDVPEVSKDDPQYAQVEQSLKSLYGQFS 523

Query: 495 TAEEVSSKANQLVLEY 510
             + + +   +     
Sbjct: 524 AEQYIKTLMLEEQARL 539



 Score = 57.7 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 80/257 (31%), Gaps = 14/257 (5%)

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL-VDFA 421
           +F+E +  + N  RIT A E   E      + +      D     E + +I   L +  +
Sbjct: 280 TFEEARLAVRNDYRITAAREIASERAH---DLVVSIIENDFQHDSEGLATILAELELKTS 336

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
                 +      +   ++ + F           + + + S +       I       + 
Sbjct: 337 SPFAANQTPIGTVWGRDVVEQAFELSTERFYSEPLQVENRSIVLF-YNNVIAPIVPSFDT 395

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN---FRDIGKNLGASLLTTNQINRMD 538
           +   +  D +  +  +  +  A +L  +      +   F    +  G S+   N+   + 
Sbjct: 396 LRDKIISDVRAEEYRKVRAEYAVELKAKLEANADSEISFGAAAEEAGLSVTPFNEFT-LV 454

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSY-VVFKVTNSKVGPVQEKDKFISYLTQM 597
              +      +S +     + V  F   NG +      V +  V  V + D   + + Q 
Sbjct: 455 EPAEGLDRRALSSMLELDSKEVSDFIRLNGENQGAYLYVVSKDVPEVSKDDPQYAQVEQS 514

Query: 598 M----NKDLLDSVIAYL 610
           +     +   +  I  L
Sbjct: 515 LKSLYGQFSAEQYIKTL 531



 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 12/155 (7%)

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK-----EGKNFRDIGKNLGASLLTTN 532
             EE    V+ D++     E  S +A+ LV+   +     + +    I   L   L T++
Sbjct: 280 TFEEARLAVRNDYRITAAREIASERAHDLVVSIIENDFQHDSEGLATILAEL--ELKTSS 337

Query: 533 QINRMDNE-NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
                       +G D + Q F    E     P++     +V    N     V   D   
Sbjct: 338 PFAANQTPIGTVWGRDVVEQAFELSTERFYSEPLQVENRSIVLFYNNVIAPIVPSFDTLR 397

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
             +   +  +        ++++Y+V +   L    
Sbjct: 398 DKIISDVRAEEYR----KVRAEYAVELKAKLEANA 428


>gi|319952479|ref|YP_004163746.1| ppic-type peptidyl-prolyl cis-trans isomerase [Cellulophaga
           algicola DSM 14237]
 gi|319421139|gb|ADV48248.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga
           algicola DSM 14237]
          Length = 706

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/577 (14%), Positives = 202/577 (35%), Gaps = 63/577 (10%)

Query: 24  PFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
            F++ G+  ++A       S+V  V  ++V    F    ++++ + S+  G       A 
Sbjct: 24  AFVVSGIFSTNAFSGAKVGSSVADVNGEEVSIDGF----REQVEVASKSYGAS-----AS 74

Query: 82  SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA------RSPLFHGKDNKFSHD 135
           S+ +   + +  V  A LDQ  E +G+  +  ++   +       + P F  ++  F   
Sbjct: 75  SMQIVNNVYEQNVRNAVLDQQFEKLGIVVEQDQIVNFLRTNPTYSQLPQFLNENGVFDES 134

Query: 136 VFVSRLAR------EGINE-KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
            F++ +A        G  +  +   +  +         +   G+  +    +   +   +
Sbjct: 135 KFINFIADLKKNNPAGYQQWLQEEKNIIRAAKEQIYFNLIRAGVGTTLKEGELDYKLAND 194

Query: 189 NRSVDYIVLN-NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
              + Y+ +     + +    S + +  + + +K++++    + I ++ F+     K   
Sbjct: 195 KLDISYVRVPYTSILDSTVAVSKSEIEAYVKAHKEDFKQDNSRDIQFVYFEEKVSLKDEN 254

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
              +++ A    N+              VF  +K+  E  +  +     I   +    + 
Sbjct: 255 EVKEKINALLNDNQ--------------VFSKEKDTTETVRGFRNTTDNIAFLDINSDTK 300

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
            D       K  +P  ++AD++  L+  G           + ++ ++  +         V
Sbjct: 301 FDTI--YKPKSSLP-ANVADTLVKLS-IGTIYGPYRDGNTFKVSKLTGKRAGG-----NV 351

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
           K      +  + AS   +E  +  EE  A   + + ++  +K  ++   L         G
Sbjct: 352 KAS-HILIAFSGASNAGEEVTRTKEE--AESKAKEVLAEAKKSGAVFADLAKENSDGPSG 408

Query: 428 KEVAAIPYKEQLL----FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
                + + ++      F  F  ++       V   D  +  V+++E        L +V 
Sbjct: 409 PRGGDLGFFQKGAMVKPFNDFVFNNGAGSIGLVET-DFGFHIVKVEEKQD-----LYQVA 462

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
             V++   + +T + +   A +  +   +    F +I K     +   N++N MD     
Sbjct: 463 NLVREIEPSEETIDLLFQDATKFEMSTVENKSKFEEIAKKDNYVVRPVNKLNPMDENLPG 522

Query: 544 FG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
            G     +   F+   E+      +    Y V ++T 
Sbjct: 523 LGAQRPIVQWAFNADSEIGDVKRFDLNDGYAVVRLTA 559


>gi|30262343|ref|NP_844720.1| peptidylprolyl isomerase [Bacillus anthracis str. Ames]
 gi|47778036|ref|YP_018981.2| peptidylprolyl isomerase [Bacillus anthracis str. 'Ames Ancestor']
 gi|30256974|gb|AAP26206.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. Ames]
 gi|47551741|gb|AAT31456.2| peptidylprolyl isomerase PrsA [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 298

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246
           Y ++ ++ +      S+    +  E+ KD    N++   E   +        + + +I  
Sbjct: 70  YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 129

Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 130 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 180

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 181 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 239

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 240 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 289



 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 141 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 200

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 201 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 250

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V E  K+
Sbjct: 251 IRKDIEQQRLQDTTGKWKQQVVNELLKD 278



 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 160 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 219

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 220 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 279

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 280 DIKVNDK 286


>gi|197118895|ref|YP_002139322.1| PpiC-type peptidylprolyl cis-trans isomerase [Geobacter
           bemidjiensis Bem]
 gi|197088255|gb|ACH39526.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           bemidjiensis Bem]
          Length = 351

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 103/294 (35%), Gaps = 47/294 (15%)

Query: 139 SRLAREG--INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           + +   G  I + +       ML++  V             L  QA+    E  +   ++
Sbjct: 59  AVVRVNGTPITKLDVERAVKVMLAQNKVDQPI------PPELQKQAESAALEQLTSAELL 112

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE--------------------YKRISYIL 236
                   I D  + ++ Q   + +  ++                        K I    
Sbjct: 113 YQEASKSKIPDL-DKMIEQKVSQNRQKFKTEAELVEALSALEMTLPDLEEFTRKEIVLST 171

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKE------------A 283
           +     + K  +S++E++  Y+ N  +YF  PE      ++    ++            A
Sbjct: 172 YIAEHFQNKASVSDEEVKKFYDDNLNQYFKKPESVKASHILVGTDEKSTPEDKKKAKEKA 231

Query: 284 DEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           +   + L+ G+ F  +A+ +     +     LG F +  +      ++ F L K G+ + 
Sbjct: 232 EALLKRLQAGEDFAAVAKGESTCPSASEGGDLGEFGRGQMV-PEFEEAAFKL-KPGEMSG 289

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           V+   FGY I  V+  + +     + VK+ I   ++  K  +++      L++ 
Sbjct: 290 VVETKFGYHIIKVTGKQEAAAEKLENVKETIVEFLKKQKEQQELSNFIDELKKK 343


>gi|253998626|ref|YP_003050689.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           SIP3-4]
 gi|313200700|ref|YP_004039358.1| ppic-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           MP688]
 gi|253985305|gb|ACT50162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           SIP3-4]
 gi|312440016|gb|ADQ84122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           MP688]
          Length = 267

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           + +  KK  +S+  ++AEYEK K++    E      ++   + EA +    L KG  F +
Sbjct: 104 LEDYLKKNPVSDAAVKAEYEKYKQEVGDKEY-NARHILVATEAEAKDIIAQLGKGADFAK 162

Query: 299 LAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+E+ K          LG F+   +     ++++  + K       +   FG+ +  + 
Sbjct: 163 LAKEKSKDPGGKENGGDLGWFAPGSMVKP-FSEAVTKMKKGSYTADPVQTQFGWHVIKLE 221

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +++ +  + F++V+  +  Q++  +  + + +   + +
Sbjct: 222 DVRDAQPMPFEKVQDALKKQLQQRQLEKLLSDLRSKAK 259



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 41/125 (32%), Gaps = 2/125 (1%)

Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGA-SLLTTNQINRMDNENKFFGYDGISQVFSGP 556
              ++A  ++ +  K G +F  + K          N  +                V    
Sbjct: 142 ATEAEAKDIIAQLGK-GADFAKLAKEKSKDPGGKENGGDLGWFAPGSMVKPFSEAVTKMK 200

Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
                  P++    + V K+ + +       +K    L + + +  L+ +++ L+S+  +
Sbjct: 201 KGSYTADPVQTQFGWHVIKLEDVRDAQPMPFEKVQDALKKQLQQRQLEKLLSDLRSKAKI 260

Query: 617 TVHDN 621
             +  
Sbjct: 261 VENPA 265


>gi|226324373|ref|ZP_03799891.1| hypothetical protein COPCOM_02154 [Coprococcus comes ATCC 27758]
 gi|225206821|gb|EEG89175.1| hypothetical protein COPCOM_02154 [Coprococcus comes ATCC 27758]
          Length = 245

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 83/193 (43%), Gaps = 12/193 (6%)

Query: 212 VLTQWFEKYK----DNYRA--PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
            L ++ E+ K    + ++A     ++       + +  + I IS++E++  +E NK ++ 
Sbjct: 52  ALAKYGEEEKLDETEKFKAILENARKDILAQMAIGKIFEGIIISDEEIREYFEANKARFA 111

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIP 321
                  + ++  ++ + ++  +S+   GK F  +A+E     S      LG F K  + 
Sbjct: 112 KGASVHAKHILVDSEDKCNKLLESIVSGGKAFEDVAKESSTCPSGANGGDLGEFGKGQMV 171

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                D+ F+ A+ G     +   FGY +  V + K +      +VK+ I +++   K  
Sbjct: 172 K-EFEDAAFA-AEIGHVVGPVKTQFGYHLIKVEDKKEAEDAKLDDVKEQIKSEIMQKKQQ 229

Query: 382 EKVKEDYKRLEEF 394
           E      + L++ 
Sbjct: 230 EAYTAKVEALKKK 242



 Score = 37.3 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 9/119 (7%)

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
           LE  ++ G + +++++         P     G   +  +   +   E   F         
Sbjct: 133 LESIVSGGKAFEDVAKESS----TCPSGANGGDLGEFGKGQMVKEFEDAAFAAEIGHVVG 188

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
                       Y  +++++   A D KL++V   +K +    K  E  ++K   L  +
Sbjct: 189 PVKTQF-----GYHLIKVEDKKEAEDAKLDDVKEQIKSEIMQKKQQEAYTAKVEALKKK 242


>gi|150389495|ref|YP_001319544.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949357|gb|ABR47885.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           metalliredigens QYMF]
          Length = 249

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 68/156 (43%), Gaps = 5/156 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
           ++  + I I++ E+   Y +NK ++  P       ++  ++++A      LK+G  F + 
Sbjct: 87  NKLLRDITITDSEITNYYTENKAQFEQPAQVQASHILVDSEEKAQGVLAELKEGLSFEEA 146

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A +     S      LG F++  +      ++ F++ +    +  +   FGY I  V + 
Sbjct: 147 ATKHSSCPSNAKGGDLGLFAQGQMV-PEFEEAAFNM-EVDTVSEPVKTQFGYHIIKVVDQ 204

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           KP+   S  EVK  +  Q+   K  +   +  + L+
Sbjct: 205 KPAQEKSLAEVKDQLNQQLLSQKQQKAYFDKIEALK 240


>gi|282880786|ref|ZP_06289482.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305320|gb|EFA97384.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
          Length = 713

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 101/734 (13%), Positives = 215/734 (29%), Gaps = 139/734 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56
           L  IRK        I + ++ +    +   +   S   S       V  V  +KV    F
Sbjct: 4   LGKIRKR-----GMILISIIGLGLFAFIAEEGFRSCEASRNDQRQQVGKVLGEKVNVQDF 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                +   +I  + G V N    +   +   +    +    ++   + IGL      + 
Sbjct: 59  QKLMDEYTEVIKMQQG-VDNLNEMQMNQVKDMVWQTYIQTKVVEDEAKKIGLTVTDAELQ 117

Query: 117 G--------EIARSPLFHGKDNKFSHDVFVSRLA----REGINEKEYIDH---------- 154
                     + ++P  + +  +F  +     +A    ++  N +    +          
Sbjct: 118 NILAEGTNPMLMQTPFVNRQTGRFDVNSLKKFIADYKTQQTANPQMAAQYQTLYKYWTFI 177

Query: 155 ---YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL-------------- 197
                + +       +  G +  + +    + +   E  S+                   
Sbjct: 178 ERTLRQQILAQKYQSLLAGCILSNPVEAKLSYKEENEESSIQLATFAYSTIDDSKIKVQD 237

Query: 198 ---------------------NNRHVPAIADPSNA---VLTQWFEKYKDNYRA---PEYK 230
                                + ++V    +PS A    L Q F+KY  +  A   P   
Sbjct: 238 ADLKAKYDELKERFKQNVESRDIKYVTVRVEPSPADRAELQQTFKKYTTDLAAASEPANV 297

Query: 231 R------ISYILFDVHEKEKKIEISND-------------ELQAEYEKN----KEKYFSP 267
                  ++Y+   V +     +I++              E + +   N      K   P
Sbjct: 298 VRKSTSLVNYLGIPVAKTAYPNDIADKLDSMAVGQTYGPFETKMDNSMNVVKLISKQLLP 357

Query: 268 EIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
           +     Q+          QK AD  + +L  G  F  +A++ G+S         +     
Sbjct: 358 DSVQYRQIQVMGKTPAEAQKRADSIYTALNAGAAFETIAKKYGQS---GEKVWMTTAQYQ 414

Query: 322 DVSLADS-----IFSLAKKG--DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
           +    D+     I +L   G  +   +  G  G +I  V + +         V   I   
Sbjct: 415 NAPSLDADTKTYIGTLNNSGVNELKNIKLGQ-GNLIVQVVDRRAMINKYTAAV---IKKS 470

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
           +  +K  +   + Y +   F++   + + I +  K     +   D          +  I 
Sbjct: 471 IDFSK--DTYSKAYNKFSSFVSANQTPESIQKNAKSSGYTVQ--DAKDITTSTHTLVGIN 526

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKT 492
              + +  +F   +           +   + V + +  P   R  +  +V   +K +   
Sbjct: 527 ATREAMKWLFDAKEGEISPMYECGNNDQLLLVVLDKIHPKGYRSYDDPQVKEFLKAEVLR 586

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN----ENKFFGYDG 548
            K AE++ +KA  +        KN     +  GA +   NQI                  
Sbjct: 587 DKKAEQLMAKAKDV--------KNIAA-AQAKGAKVDAVNQITFAAPVFVMSVGASEPAL 637

Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
              V +         P++      VF+VT   + P +   K     T+        + + 
Sbjct: 638 SGAVAATAKGKFSSRPVKGNAGVYVFEVTGRTMRPGKFDAKTEEQKTRQKALQYAGNFMN 697

Query: 609 YLKSQYSVTVHDNL 622
            L  + ++  +  L
Sbjct: 698 ELILKANIEDNRYL 711


>gi|225621111|ref|YP_002722369.1| hypothetical protein BHWA1_02207 [Brachyspira hyodysenteriae WA1]
 gi|225215931|gb|ACN84665.1| hypothetical protein BHWA1_02207 [Brachyspira hyodysenteriae WA1]
          Length = 491

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/514 (14%), Positives = 171/514 (33%), Gaps = 79/514 (15%)

Query: 8   ASRTWVAKIF--LV------VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV---PFSSF 56
             ++ V K    L       +L + FL+            + T+ SV  + +     S +
Sbjct: 10  KKKSPVIKTLQWLGVSAVSILLIIYFLVV----DTRGSQKTPTIGSVNGKPIYYTSTSPY 65

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ ++    Q++G  +N+E      ++       VS   L+       +      V 
Sbjct: 66  GRAFR-QIEGYYQQLGIQINNEM--YTYIEDLAFRRAVSTMLLNDVARK-NINVSDNFVV 121

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             +     F   +  ++   + S +     +EK       K L    +       +  S 
Sbjct: 122 EAMKS--QFIDTNGVYNQMAYESFIKNSSQSEKV---KIEKDLKEDILSQTVSAELFTS- 175

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
                                           ++  + + ++K          + I  + 
Sbjct: 176 -----------------------------VKLNDLEMQREYKKNLT------KRDIEMVY 200

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295
            +  E  +  ++++ +L+  +  NK  +   +   +  ++  +   AD  ++SLK     
Sbjct: 201 INASEIVQSNQVADADLEKYFTDNKTNFAQAD---ISWIITQSGGVADNLYKSLKADISL 257

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS---LAKKGDFTPVIHGSFGYVIAH 352
           F + A E+    ++  LG  ++  +P+   A+ IF+     K  +    I+ +  Y I  
Sbjct: 258 FEKTAMEKSFDTNNYKLGYLTRMQMPNEDFANKIFANNNNTKGSNLLQPIYANGYYYIVL 317

Query: 353 VSNIKPSFTVSFQEV-KKDIANQMRITKASEKVK-EDYKRLEEFLALGTSMDEISRREKI 410
           V++I+      + +V K+ +  +      +  ++ E  K+ E   A   +++ ++R    
Sbjct: 318 VNDIRIPE--KYTDVNKEVLRREYLNANMNTLLEAEKTKQAEVLKAAVANVNNLARLNGN 375

Query: 411 VSID----LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
             I          +    +   E A IP      F +       ++   V   D     +
Sbjct: 376 GLIKYYKPAQPFSYNQGRLNTAEGAIIPDSTTESFYMHVFSMQTNQVSDVIKLDNGVAVI 435

Query: 467 Q-IKESIP--ARDRKLEEV-LTDVKKDWKTVKTA 496
           + + E  P  A    L+      VK++    +  
Sbjct: 436 RLVSEEKPNMATLTTLDAATKNAVKRELSMQRMN 469


>gi|254975855|ref|ZP_05272327.1| putative protein export chaperone [Clostridium difficile QCD-66c26]
 gi|255093242|ref|ZP_05322720.1| putative protein export chaperone [Clostridium difficile CIP
           107932]
 gi|255307280|ref|ZP_05351451.1| putative protein export chaperone [Clostridium difficile ATCC
           43255]
 gi|255314984|ref|ZP_05356567.1| putative protein export chaperone [Clostridium difficile QCD-76w55]
 gi|255517659|ref|ZP_05385335.1| putative protein export chaperone [Clostridium difficile QCD-97b34]
 gi|255650769|ref|ZP_05397671.1| putative protein export chaperone [Clostridium difficile QCD-37x79]
 gi|260683854|ref|YP_003215139.1| putative protein export chaperone [Clostridium difficile CD196]
 gi|260687514|ref|YP_003218648.1| putative protein export chaperone [Clostridium difficile R20291]
 gi|306520675|ref|ZP_07407022.1| putative protein export chaperone [Clostridium difficile QCD-32g58]
 gi|260210017|emb|CBA64063.1| putative protein export chaperone [Clostridium difficile CD196]
 gi|260213531|emb|CBE05267.1| putative protein export chaperone [Clostridium difficile R20291]
          Length = 380

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 87/235 (37%), Gaps = 46/235 (19%)

Query: 196 VLNNRHVPAIADPSNAVLTQWF---------------EKYKDNYRAPEYK---RISYILF 237
           +L++         +N  L   +               E++   +   E      +   L 
Sbjct: 141 ILSSEAAKEKISITNDQLDAQYNNLMSSIESAMGMTKEEFLKQFDLTEKYIKDDMKKELV 200

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------------QK 281
                 +K ++++ E +  Y KNK  Y          ++                   +K
Sbjct: 201 ASKYLNEKSKVTDKEAENYYNKNKSNYL---QVRASHILIKTVDDKGKQVSSSKKAELKK 257

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           EA+E  +  + G+ F  LA++  +  S      LG F K  + + S   + F+L KKG+ 
Sbjct: 258 EAEEILKKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVE-SFEKAAFAL-KKGEV 315

Query: 339 T-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +  ++   +GY I   ++ K      F+EVK D+ + +   K +  ++   ++  
Sbjct: 316 SNKLVESDYGYHIIKKTDEK---YQPFEEVKSDLVSSLTSEKQNLLIQNLKEKYN 367


>gi|150019698|ref|YP_001311952.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906163|gb|ABR36996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 248

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
                +++    + I+++E++  YE NKE +  P   +   ++   ++EA++A + +  G
Sbjct: 80  ITSMAINKVLSDVTITDEEVKKYYEDNKEAFGQPATVSARHILVETEEEANKAREEILSG 139

Query: 294 K-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           K  F   A +     S     +LG FSK  +      ++ F+ ++ G  T  +   FGY 
Sbjct: 140 KISFGDAAMKYSTCPSNQQGGNLGEFSKGMMV-PEFEEAAFT-SEIGKVTEPVKTQFGYH 197

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +  V     +   SF+EVK  + + +      +K  +  K LE  
Sbjct: 198 LVLVDAKNEASIKSFEEVKDSVLDNLIKENQHKKYDQILKELEAK 242


>gi|49477885|ref|YP_036943.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49329441|gb|AAT60087.1| peptidylprolyl isomerase (protein export protein prsA) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 280

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 84/237 (35%), Gaps = 27/237 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNA--VLTQ 215
           S  ++V    G +  S+      + +  +N S  V   VLN+++     + +     L  
Sbjct: 24  SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKATDEEVTKQIKELKT 83

Query: 216 WFEKYKDNYR------APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
                 + Y         +  +    L    EK  K  ++  E++  Y+           
Sbjct: 84  KMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKEIKDHYK---------PK 134

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSL 325
                ++  ++K A E  + L  G+ F  LA+    + G       L  F    +     
Sbjct: 135 LQASHILVKDEKTAKEIKEKLNNGEDFAALAKRYSEDPGSKEKGGDLSEFGPGMMVK-EF 193

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            D+ + L + G  +  I  SFGY I  ++  K      ++E K +I  ++   +  +
Sbjct: 194 EDAAYKL-EVGQVSEPIKSSFGYHIIKLTGKKE--LKPYEEEKVNIRKELEQQRIQD 247


>gi|229115799|ref|ZP_04245201.1| Foldase protein prsA 1 [Bacillus cereus Rock1-3]
 gi|228667682|gb|EEL23122.1| Foldase protein prsA 1 [Bacillus cereus Rock1-3]
          Length = 293

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+   T+  ++ KD               +  +  +         
Sbjct: 65  YQMVLSKALLDKYKVSDEEATKQVKEAKDKMGDNFKETLEKLGLKNEDELKEKMKPEIAF 124

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 125 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFATLA 175

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  S+GY I  V++ K
Sbjct: 176 KQYSEDTGSKEQGGEIAGFGPGQTVKEFEEAAYKL-NAGQVSEPVKTSYGYHIIKVTDKK 234

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F+EVK  I   +   +  +   +  +++   L     +    +  K  
Sbjct: 235 E--LKPFEEVKDKIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEYKET 286



 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 136 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFATLAKQYSEDTGSKEQGGEIAGFG 195

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  EEV   
Sbjct: 196 PGQTVKEFEEAAYKLNAGQVSEPVKTSY--------GYHIIKVTDKKE--LKPFEEVKDK 245

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V +  K+
Sbjct: 246 IRKDLEQQRLQDTTGKWKQQVVNDLLKD 273



 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 155 EKTAKEVKEKVNNGEDFATLAKQYSEDTGSKEQGGEIAGFGPGQTVKEFEEAAYKLNAGQ 214

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P +E KDK    L Q   +D        V+  L    
Sbjct: 215 VSEPVKTSYGYHIIKVTDKKELKPFEEVKDKIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 274

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 275 DIKVNDK 281


>gi|118477742|ref|YP_894893.1| peptidylprolyl isomerase [Bacillus thuringiensis str. Al Hakam]
 gi|118416967|gb|ABK85386.1| protein export protein [Bacillus thuringiensis str. Al Hakam]
          Length = 298

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 84/224 (37%), Gaps = 12/224 (5%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKIEI 248
           Y ++ ++ +      S+    +  E+ KD    N++   E   +        + + +I  
Sbjct: 70  YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 129

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
                    EK+ +  + PE++ V  ++  ++K A E  + +  G+ F  LA++  +   
Sbjct: 130 EKAITATVTEKDVKDNYKPEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTG 188

Query: 309 DISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
               G     + P        ++ + L   G  +  +  ++GY I  V+N K      F 
Sbjct: 189 SKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTNKKE--LKPFD 245

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 246 EVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 289



 Score = 40.4 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 50/148 (33%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 141 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 200

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++        +  +EV   
Sbjct: 201 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTNKKE--LKPFDEVKDS 250

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V E  K+
Sbjct: 251 IRKDIEQQRLQDTTGKWKQQVVNELLKD 278



 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 160 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 219

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVTN K + P  E KD     + Q   +D        V+  L    
Sbjct: 220 VSEPVKTTYGYHIIKVTNKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 279

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 280 DIKVNDK 286


>gi|315187212|gb|EFU20969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           thermophila DSM 6578]
          Length = 501

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 80/493 (16%), Positives = 152/493 (30%), Gaps = 86/493 (17%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPF------SSFINSWKQELG 65
           W + I   ++ V F+  G+  A                 V        + F    ++   
Sbjct: 21  WGSIIVFAIIVVSFIFVGVPSAGVGSQTKIVYGKYAGMPVEQLPQMPYTYFQREIERLSD 80

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
            I Q+        +  +  + +   +N V      +  +D GL      +   + R    
Sbjct: 81  QIRQQ-NVTAEQSQFLTYQILRTAFNNTVFHLAALKLAQDAGLHVSSKALDRAVMRE--- 136

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
           + +D +FS D +++    E    +++   Y + +    VV   V G   S          
Sbjct: 137 YTEDGEFSEDRYLATPPAERHQIRKF---YRETILSQQVVNDLVFGNVVSEAERSFIAEM 193

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
            +  R + Y+V +    P            + E + D ++  E  RI+            
Sbjct: 194 NYPQRKIRYLVYDFDEYP------ETEAKAYGEAHPDLFKTMELSRIT------------ 235

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-LKKGKKFIQLAEEQG 304
                                         V  +Q EA++ +Q+ LK+ ++F +LA    
Sbjct: 236 ------------------------------VTSSQIEAEKLYQTLLKEPERFEELARASS 265

Query: 305 KSLS---DISLGSFSKEYIPDVSLAD---SIFSLAKKGDFTPVIHGSFG-YVIAHVSNIK 357
           +  +      +G      + D+   D   +IFS+ KKGD   V     G +VI       
Sbjct: 266 RDPNASQGGKMGVVRYADLKDLLSEDDLVTIFSM-KKGDILGVFTTLSGAWVIVRCDREA 324

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
            +  ++ ++    I N +   +    V+E +      L    S++E     +        
Sbjct: 325 EAPDLTRKDTLDYIKNYLLSYE-RNIVEEYFSTKASALRAAQSLEEFEAMARDQGKTPGS 383

Query: 418 VDFAGKDV--------------KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
             +   +                G  + A  Y E    RVF        D  V L  G  
Sbjct: 384 TGYFAINYGNLEIFPSPVANTDDGNILQAAVYSESFFERVFSTPVGGVTD-PVNLQGGLL 442

Query: 464 MWVQIKESIPARD 476
           +     E   + D
Sbjct: 443 VAFIEAEKTESED 455


>gi|126699880|ref|YP_001088777.1| putative protein export chaperone [Clostridium difficile 630]
 gi|255101406|ref|ZP_05330383.1| putative protein export chaperone [Clostridium difficile QCD-63q42]
 gi|115251317|emb|CAJ69148.1| Peptidyl-prolyl cis-trans isomerase, PpiC-type [Clostridium
           difficile]
          Length = 380

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 87/235 (37%), Gaps = 46/235 (19%)

Query: 196 VLNNRHVPAIADPSNAVLTQWF---------------EKYKDNYRAPEYK---RISYILF 237
           +L++         +N  L   +               E++   +   E      +   L 
Sbjct: 141 ILSSEAAKEKISITNDQLDAQYNNLMSSIESAMGMTKEEFLKQFDLTEKYIKDDMKKELV 200

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------------QK 281
                 +K ++++ E +  Y KNK  Y          ++                   +K
Sbjct: 201 ASKYLNEKSKVTDKEAENYYNKNKSNYL---QVRASHILIKTVDDKGKQVSSSKKAELKK 257

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           EA+E  +  + G+ F  LA++  +  S      LG F K  + + S   + F+L KKG+ 
Sbjct: 258 EAEEILKKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVE-SFEKAAFAL-KKGEV 315

Query: 339 T-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +  ++   +GY I   ++ K      F+EVK D+ + +   K +  ++   ++  
Sbjct: 316 SNKLVESDYGYHIIKKTDEK---YQPFEEVKSDLVSSLTSEKQNLLIQNLKEKYN 367


>gi|83309610|ref|YP_419874.1| parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
 gi|82944451|dbj|BAE49315.1| Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
          Length = 320

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 76/186 (40%), Gaps = 11/186 (5%)

Query: 230 KRISYILFDVHEKEKKI--EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           KR+   L      +KK+   ++++ ++  Y++  + +   E      ++   ++ A    
Sbjct: 137 KRVEIQLMAQALMQKKVRGAVTDEAVKVRYDQAVKNFQPQEEVHARHILAETEEGARSII 196

Query: 288 QSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VI 342
             L +G  F +LA+ + K          LG F +  +     A + F++ + G+ +   +
Sbjct: 197 ADLNRGMDFAELAKTRSKDTGSGAMGGDLGYFVQGAMV-PEFAAAAFAM-RPGELSKTPV 254

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA--LGTS 400
              FGY +  V + + +    + + K  IA Q+      + V E  ++ +       GT 
Sbjct: 255 KTQFGYHVIKVEDKRMASIPPYDQAKPVIARQIAEELQEKMVVELREKAKIKRFKPDGTP 314

Query: 401 MDEISR 406
           ++   +
Sbjct: 315 LEAAKK 320



 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 55/148 (37%), Gaps = 11/148 (7%)

Query: 480 EEVLTDVKKDWKTVKTAEEVSSK---------ANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           E V     +  K  +  EEV ++         A  ++ + ++ G +F ++ K       +
Sbjct: 160 EAVKVRYDQAVKNFQPQEEVHARHILAETEEGARSIIADLNR-GMDFAELAKTRSKDTGS 218

Query: 531 TNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
                 +          +  +  F+     +   P++    Y V KV + ++  +   D+
Sbjct: 219 GAMGGDLGYFVQGAMVPEFAAAAFAMRPGELSKTPVKTQFGYHVIKVEDKRMASIPPYDQ 278

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               + + + ++L + ++  L+ +  + 
Sbjct: 279 AKPVIARQIAEELQEKMVVELREKAKIK 306


>gi|213963094|ref|ZP_03391352.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           sputigena Capno]
 gi|213954178|gb|EEB65502.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           sputigena Capno]
          Length = 705

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 97/602 (16%), Positives = 205/602 (34%), Gaps = 72/602 (11%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           LE IR  S+T      + +    F+I   +    FS    + + +V  + V   +F    
Sbjct: 4   LEKIR--SKTVFLIAIIGLALFAFIISDFIGKGRFSNHMPNEIGTVNGEDVSIDAFRAQV 61

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +       Q  G V + E A+       + +  V    L+Q IE +GL  +  ++   +A
Sbjct: 62  EN---ATRQANGQVSSIEAAKY------VWEQKVQEILLNQQIEKLGLSVEKDQILAILA 112

Query: 121 -----RSPLFHGKDNKFSHDVFVSRLAREGIN-EKEY------IDHYTKMLSRTDVVGMF 168
                ++P F  +   F    F S LA       + Y       D   +   +     + 
Sbjct: 113 KTPLAQNPQFVNELGVFDPHKFTSYLATLKSTNPEAYAQWKIQEDAIVEGAKQQMYFSLI 172

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAP 227
             G+  +N   +       +   ++Y+ L    +       ++  +  + +K++  ++  
Sbjct: 173 RAGLGVTNAEAEMEYHQEKDLADINYVALQYSSIDDKNITVTDGEIQDYIKKHEKQFKQE 232

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
            Y+ I YI+       K +E     L         K   PE      +V+ ++  +++  
Sbjct: 233 AYRNIQYIVAAEKPSAKDMEAEKQSL--------LKLLQPE------VVYNSKTNSNDTL 278

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
               K K   +  +       D    +F  +     + AD++++L   G           
Sbjct: 279 PGFAKTKNIKEFVDRNSNVPYD---STFVNKDNIRSAYADTLYALP-VGKVFGPYEEDGN 334

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE---------KVKEDYKRLEEFLALG 398
             ++ +   +P+  V        I    + ++A+             +  + L +    G
Sbjct: 335 IKLSRMVAKEPAGAVK----ASHILIAYQGSQAATPNTTRTKEEAKAKAEELLAKAKTAG 390

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
           T   E++R               G   KG  V          F  F   +P+     V  
Sbjct: 391 TDFAELARENSEEPGAAYSGGDLGFFGKGAMVKP--------FEEFAFANPVGNIGLVET 442

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
            D  +  V++     A    +  +   V+    +  T  E+ SK +   ++ S+  K F 
Sbjct: 443 -DFGFHVVKVTG--KAEAVNIATISRAVEP---SEATVSEIFSKVSNFEMKASQNPKEFA 496

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
            I K  G S+L  + +++ D++    G     +  +F+   ++        G + +V ++
Sbjct: 497 SIAKKFGLSVLRADNLHKNDDQIIGLGSNRAIVQWLFNKDTKVGDIKRFNAGSNNIVAQL 556

Query: 577 TN 578
             
Sbjct: 557 VK 558



 Score = 77.3 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 106/336 (31%), Gaps = 32/336 (9%)

Query: 292 KGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G  F +LA    EE G + S   LG F K  +      +  F+    G+   ++   FG
Sbjct: 389 AGTDFAELARENSEEPGAAYSGGDLGFFGKGAMVKP-FEEFAFA-NPVGNI-GLVETDFG 445

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA--SEKVKEDYKRLEEFLALGTSMDEIS 405
           + +  V+    +  +        I+  +  ++A  SE   +      +          I+
Sbjct: 446 FHVVKVTGKAEAVNI------ATISRAVEPSEATVSEIFSKVSNFEMKASQNPKEFASIA 499

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
           ++  +  +    +          ++  +     ++  +F KD  +           + + 
Sbjct: 500 KKFGLSVLRADNLHK-----NDDQIIGLGSNRAIVQWLFNKDTKVGDIKRFNAGSNNIVA 554

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
            Q+ +        +++    VK      K A  +  KA         +G + + I     
Sbjct: 555 -QLVKQGEEGLSSVQDAAPIVKPILIREKKAAILKEKA---------KGNSLQAIASANK 604

Query: 526 ASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
             + +   +   +      G +   +   F      +          YV+  ++ +    
Sbjct: 605 TEVKSATGLVMKNPTIIGEGREPKVVGAAFGLKQGQISKPIDGENAVYVIQLISETIAPA 664

Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
           + +       +  +  +    +++  L++  ++  +
Sbjct: 665 ITDYRTQAETVENLRTERAAQNILKSLENSATIKEN 700



 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 41/120 (34%), Gaps = 7/120 (5%)

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIF 330
           ++   +K A    +   KG     +A      +   +        I     +  +  + F
Sbjct: 577 ILIREKKAA--ILKEKAKGNSLQAIASANKTEVKSATGLVMKNPTIIGEGREPKVVGAAF 634

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            L K+G  +  I G     +  + +   +  ++    + +    +R  +A++ + +  + 
Sbjct: 635 GL-KQGQISKPIDGENAVYVIQLISETIAPAITDYRTQAETVENLRTERAAQNILKSLEN 693


>gi|302873039|ref|YP_003841672.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
 gi|307688832|ref|ZP_07631278.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
 gi|302575896|gb|ADL49908.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
          Length = 247

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 5/163 (3%)

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
                 E  K +EI++ ++   Y+ N+E +  PE+ T   ++  ++++A E    ++ G 
Sbjct: 81  FPIAADEVTKDVEIADQDVADFYKNNRELFKKPELATASHILVDSEEKAQEIKAEIEAGL 140

Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F   A +     S      LG F K  +      +  F+L      +  +   FGY + 
Sbjct: 141 SFADAAAKYSTCPSNQRGGDLGQFQKGQMV-PEFEEVAFTLPIN-KLSDPVKTQFGYHLI 198

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            V++ +P     F EV+  I  +M   +   K  E    L++ 
Sbjct: 199 KVTDFQPEMIQDFDEVQVAIKEKMLQDRRQYKFLEKVDELKKL 241



 Score = 38.0 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           +E  + ++  +  G S  + + +        P     G   + ++   +P  E++ F + 
Sbjct: 126 EEKAQEIKAEIEAGLSFADAAAKYS----TCPSNQRGGDLGQFQKGQMVPEFEEVAFTL- 180

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
               P++K          Y  +++ +  P   +  +EV   +K+     +   +   K +
Sbjct: 181 ----PINKLSDPVKTQFGYHLIKVTDFQPEMIQDFDEVQVAIKEKMLQDRRQYKFLEKVD 236

Query: 505 QL 506
           +L
Sbjct: 237 EL 238


>gi|30020980|ref|NP_832611.1| peptidylprolyl isomerase [Bacillus cereus ATCC 14579]
 gi|46396822|sp|Q81CB1|PRSA4_BACCR RecName: Full=Foldase protein prsA 4; Flags: Precursor
 gi|29896533|gb|AAP09812.1| Protein export protein prsA precursor [Bacillus cereus ATCC 14579]
          Length = 280

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 92/239 (38%), Gaps = 31/239 (12%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           S  ++V    G +  S+      + +  +N S    ++  + +      ++  +T+  E+
Sbjct: 24  SSDNIVTTKSGSISESDFNKKLKENYGKQNLS---EMVVEKVLHDKYKVTDEEVTKQLEE 80

Query: 220 YKD----NY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
            KD    N+         +  +  +    L    EK  K  ++  +++  Y+        
Sbjct: 81  LKDKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK-------- 132

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---V 323
                V  ++  ++K A E  + L  G+ F  LA++  +       G    E+ P     
Sbjct: 133 -PKLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK 191

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
              D+ + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +
Sbjct: 192 EFEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 247


>gi|16804258|ref|NP_465743.1| hypothetical protein lmo2219 [Listeria monocytogenes EGD-e]
 gi|224500981|ref|ZP_03669288.1| hypothetical protein LmonFR_00430 [Listeria monocytogenes FSL
           R2-561]
 gi|46396978|sp|Q8Y557|PRSA2_LISMO RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|16411689|emb|CAD00297.1| lmo2219 [Listeria monocytogenes EGD-e]
          Length = 293

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 30/213 (14%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247
           +      S+  + + F +YK  Y                    ++ Y L      E   +
Sbjct: 62  LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLTQSGLTEKSFKSQLKYNLLVQKATEANTD 121

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  YE      + P+I TV  ++  ++ +A E  Q LK G+KF  LA+E     
Sbjct: 122 TSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGEKFADLAKEYSTDT 175

Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G     + P   D +   + ++L  KGD +  +   +GY I  +   KP+   +F
Sbjct: 176 ATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233

Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLE 392
           ++ KK +       Q+      + +K++YK   
Sbjct: 234 EKDKKAVKASYLESQLTTENMQKTLKKEYKDAN 266


>gi|169824601|ref|YP_001692212.1| peptidil-prolyl cis-trans isomerase [Finegoldia magna ATCC 29328]
 gi|167831406|dbj|BAG08322.1| peptidil-prolyl cis-trans isomerase [Finegoldia magna ATCC 29328]
          Length = 250

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 5/159 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
           F +      + +S+DEL+  YE +K+ +      T   ++  ++  A E  + +     F
Sbjct: 85  FAMANIINSVRVSDDELKEYYENHKDNFKVQPTFTASHILVESEDLAKEIKEKIDNDGDF 144

Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            QLA+E     S      LG+F +  +      +++    + GD    +   FGY I ++
Sbjct: 145 AQLAKEYSTCPSKEQGGDLGTFQQGQMVK-EFENALIE-NEIGDIVGPVKTQFGYHIINI 202

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +       SF+E K ++   +   K  +   +   RL+
Sbjct: 203 KDKTEGKVKSFEEAKNEVKQTLLQLKQQQAYIDATDRLQ 241


>gi|307942651|ref|ZP_07657999.1| cell-binding factor 2 [Roseibium sp. TrichSKD4]
 gi|307774290|gb|EFO33503.1| cell-binding factor 2 [Roseibium sp. TrichSKD4]
          Length = 286

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 65/156 (41%), Gaps = 6/156 (3%)

Query: 237 FDVHEKEKKIE--ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
                  +KIE  +S++++QA Y+K    +   E      ++   + EAD     L+ G 
Sbjct: 109 LRNAYIAQKIEGGVSDEDVQAAYDKQFADFEGDEEINARHILVKEKAEADAIVAELQGGA 168

Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F++LA+E+    S      LG F +  +      ++ F+L         +   FG+ + 
Sbjct: 169 DFVELAKEKSTGPSGPNGGDLGFFVRGQMVGP-FEEAAFALEPGAFTIEPVQTQFGWHVI 227

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
            +   +     + ++V   +  Q+   + ++ +++ 
Sbjct: 228 KLEEKRKKPKPTLEDVSAGLRQQLTRERYTKVMEDL 263


>gi|170740805|ref|YP_001769460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
           4-46]
 gi|168195079|gb|ACA17026.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
           4-46]
          Length = 295

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 64/154 (41%), Gaps = 6/154 (3%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA-- 300
           E K  ++ +  +  Y+   +     E      ++  N+ +A +    +K G+ F ++A  
Sbjct: 118 EAKKAVTPEAARKLYDDTVKTLKPEEEVHARHILVDNEADAKKIAARIKGGEDFSKVAAE 177

Query: 301 --EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
             ++ G       LG F+KE +   + A++ F L + G  +  +   FG+ +  V   + 
Sbjct: 178 TSKDPGSKAEGGDLGWFTKERMV-PAFAEAAFKLDQ-GKVSDPVRTQFGWHVIKVEEKRT 235

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                F E+K+ I   +      + + +  ++ +
Sbjct: 236 KPVPGFDEMKEQIDTYLTRKTQQDIITKLREQAK 269



 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 4/152 (2%)

Query: 469 KESIPARDRKL--EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           K   P   RKL  + V T   ++    +     +    + +    K G++F  +      
Sbjct: 121 KAVTPEAARKLYDDTVKTLKPEEEVHARHILVDNEADAKKIAARIKGGEDFSKVAAETSK 180

Query: 527 SLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
              +  +   +     +          F      V   P+     + V KV   +  PV 
Sbjct: 181 DPGSKAEGGDLGWFTKERMVPAFAEAAFKLDQGKV-SDPVRTQFGWHVIKVEEKRTKPVP 239

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             D+    +   + +     +I  L+ Q  + 
Sbjct: 240 GFDEMKEQIDTYLTRKTQQDIITKLREQAKIE 271


>gi|126724635|ref|ZP_01740478.1| PPIC-type PPIASE domain protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126705799|gb|EBA04889.1| PPIC-type PPIASE domain protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 341

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 62/165 (37%), Gaps = 8/165 (4%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E + +   L           ++ + +   Y++               ++   + EA    
Sbjct: 156 EVRALKAGLLLDQISAD--AVTEEAVTKIYDERFAGQTGGVEWNASHILVDTEDEAKALI 213

Query: 288 QSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            +L +G  F +LA+E+    S      LG F    +       +   + + GD +  +  
Sbjct: 214 VTLAEGADFAELAKEKSTGPSGPRGGQLGWFGPGQMV-PEFEGAAAEM-ETGDVSAPVQT 271

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
            FG+ +  +++I+ +   + +EV+ +I  ++    A +   E  +
Sbjct: 272 QFGWHVLKMNDIRETPAPTLEEVRAEIVAEI-QGLAVDSAIEAAE 315


>gi|325285709|ref|YP_004261499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga lytica
           DSM 7489]
 gi|324321163|gb|ADY28628.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga lytica
           DSM 7489]
          Length = 700

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 92/600 (15%), Positives = 200/600 (33%), Gaps = 75/600 (12%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           LE IRK  RT V  + + +    F+I G+  +D +  V   +TV  +  + +    F   
Sbjct: 4   LENIRK--RTTVLILIIGLALFAFVISGIFSADGMSGVKTGTTVAEINGKDISIDKF--- 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            ++E+   S + G    S     + +   + D  V  A L    +D+G+  +  ++   I
Sbjct: 59  -RREVEAASNRFGAGATS-----MQVVNSVWDQEVKNAILSDEFDDLGISIEQDQIINFI 112

Query: 120 ARSPLF------HGKDNKFSHDVFVSRLAREGI-NEKEY------IDHYTKMLSRTDVVG 166
           A +P F        ++  F   +F   ++     N  +Y           +         
Sbjct: 113 ASNPGFSQNPQYQNENGVFDEYIFKEFISTLKTENPAQYALWLQQEQAIMQAAKEQTYFN 172

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYR 225
           +   G+  +    +   +   +   + Y+ +    +       S   +  + + ++++++
Sbjct: 173 LVKAGLGATLKEGELDYKLANDKIDIKYVRVPYTSIADSSVAVSKDEIAAYIKDHEEDFK 232

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
             + +   ++ F+     +  +    ++ +      E   +        L F N K  +E
Sbjct: 233 QEKARDFQFVYFEEKPSLEDEKAVEAKVVSLLNDKVEYNDT-------ILGFRNTKNIEE 285

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
                           ++   L   ++  +  + +     AD++ +L   GD        
Sbjct: 286 FL--------------DRNSDLKYDTI--YKTKNVLSPKFADTLMAL-NIGDIYGPYRDG 328

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK----EDYKRLEEFLALGTSM 401
             + +  + + K    V   +    +       +A+ +VK    E  KR EE L      
Sbjct: 329 NYFKVTKMMDKKKDGNV---KASHILVAWEGAERANPEVKRTKEEAKKRAEELLKDAKKG 385

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
           D         + D P     G     ++    P  ++ +F        + +         
Sbjct: 386 DVEFSVLARDNSDGPSASRGGDLGYSQQGRMTPKFDEFMFSNNVGTIGMVETEF------ 439

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
            +  V+I +        L  V T  +    +  T   + ++A Q   +     K F ++ 
Sbjct: 440 GFHIVKIDDKQD-----LVRVATLARAIEASEATINSLFTEATQFESDAKDSDKTFLELS 494

Query: 522 KNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGP--VEMVKCFPIENGLSYVVFKVT 577
           K         N+I  MD            +   F+    V  +K FP+ NG  Y V ++T
Sbjct: 495 KEKKYVARPVNKIKAMDENLPGLAAQRAIVQWAFNDDSEVGDIKRFPVNNG--YAVVQLT 552


>gi|313632264|gb|EFR99323.1| foldase protein PrsA [Listeria seeligeri FSL N1-067]
          Length = 295

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 31/242 (12%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY------------RAPEYKR--ISYILFDVHEKEKKIE 247
           +      ++  +   F+KYK  Y               E  +  + Y +      E   +
Sbjct: 62  LGDKYKVTDEQVDSEFKKYKSQYGDQFDAVLAQSGLTEETFKSQLKYNMLVQKATEANTD 121

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  Y+      + P+I TV  ++  ++ +A E  Q LK G+KF  LA+E     
Sbjct: 122 TSDKALKEYYKT-----WQPDI-TVSHILVADEAKAKEVEQKLKDGEKFADLAKEYSTDT 175

Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G     + P   D +   + ++L  KGD +  +   +GY I  +    P+   +F
Sbjct: 176 ATKDNGGKLAPFGPGKMDPAFEKAAYALKNKGDISDPVKTQYGYHIIQMDE--PATKTTF 233

Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            + KK +       Q+      + +K++YK     +     + +  +     +      D
Sbjct: 234 DKDKKAVKESYLQSQLTTENMQKTLKKEYKDANVKVED-KDLKDAFKDYDGSAKTEESTD 292

Query: 420 FA 421
             
Sbjct: 293 ST 294


>gi|229096816|ref|ZP_04227786.1| Foldase protein prsA 1 [Bacillus cereus Rock3-29]
 gi|228686658|gb|EEL40566.1| Foldase protein prsA 1 [Bacillus cereus Rock3-29]
          Length = 293

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+   T+  ++ KD               +  +  +         
Sbjct: 65  YQMVLSKALLDKYKVSDEEATKQVKEAKDKMGDNFKETLEKLGLKNEDELKEKMKPEIAF 124

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 125 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 175

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  S+GY I  V++ K
Sbjct: 176 KQYSEDTGSKEQGGEIAGFGPGQTVKEFEEAAYKL-NAGQVSEPVKTSYGYHIIKVTDKK 234

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F+EVK  I   +   +  +   +  +++   L     +    +  K  
Sbjct: 235 E--LKPFEEVKDKIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEYKET 286



 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 136 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFG 195

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  EEV   
Sbjct: 196 PGQTVKEFEEAAYKLNAGQVSEPVKTSY--------GYHIIKVTDKKE--LKPFEEVKDK 245

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V +  K+
Sbjct: 246 IRKDLEQQRLQDTTGKWKQQVVNDLLKD 273



 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 155 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFGPGQTVKEFEEAAYKLNAGQ 214

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P +E KDK    L Q   +D        V+  L    
Sbjct: 215 VSEPVKTSYGYHIIKVTDKKELKPFEEVKDKIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 274

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 275 DIKVNDK 281


>gi|254520547|ref|ZP_05132603.1| ppic-type ppiase domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226914296|gb|EEH99497.1| ppic-type ppiase domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 248

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 75/181 (41%), Gaps = 8/181 (4%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E+YK+N R  E   ++     +++   ++ +++++    Y  NK ++      + + ++ 
Sbjct: 66  EEYKENVRQAENDILT--QLTLNKLLLEVTVTDEDALNYYNNNKGEFTQQPTVSAKHILV 123

Query: 278 PNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333
            +++  D+    +   +  F + A +     S     +LG+F +  +      D  F L 
Sbjct: 124 DSKELCDKIKSEIDSKELTFEEAAMKYSTCPSKEEGGNLGAFGRGMMV-PEFEDEAFKLD 182

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                +  +   FGY +  V +      + F+E+K  I N++       K  +  K LE+
Sbjct: 183 IN-VVSEPVKTQFGYHLIKVEDKNEGREMPFEEIKAQIVNKLLQEMQQRKYLDVVKELEK 241

Query: 394 F 394
            
Sbjct: 242 K 242


>gi|94971251|ref|YP_593299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94553301|gb|ABF43225.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 369

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/386 (15%), Positives = 130/386 (33%), Gaps = 82/386 (21%)

Query: 20  VLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
           +L   FL+  L+  +F+   +     +  V  Q +  +      +Q L  + Q+     +
Sbjct: 14  ILVSSFLVAALAVPMFAGDDTVVEEIIARVNNQIITRADLRRESEQVLDQLKQQDAATAD 73

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG--EIARSPLFHGKDNKFSH 134
            +  +     K +L +L+    L     D+G+ AD   +    E+ +       D+  + 
Sbjct: 74  QKFVQRQ---KDVLRDLIDQQLLVDKGADLGISADAELIKRLDEMRKQMNLASMDDLENE 130

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
                   ++G++ +++  +    +    V+                             
Sbjct: 131 AK------KQGVSFEDFKQNMKNQIITQRVISQ--------------------------- 157

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
                  V +    +     ++++ +K     PE  R+S IL  V  ++           
Sbjct: 158 ------EVGSHIQITKDEEQKFYDAHKSEMERPEQVRLSEILVPVDAEKDPNA------- 204

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDI 310
                                    Q++A+     LK GKKF  +A+ +           
Sbjct: 205 ----------------------TAAQQKAEGIIAELKAGKKFDDVAKAESAGPTAKEQGG 242

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F +  +    L D++F L K+G++T  I    G+VI  V+  + S     Q+++  
Sbjct: 243 DLGYFKRGVLAKQ-LEDTVFPL-KEGEYTEPIRTKQGFVIIKVTEHQQSGVPPLQQIEPK 300

Query: 371 IANQMRITKASEKVKEDYKRLEEFLA 396
           +   + + K    ++    +L E   
Sbjct: 301 LQEAVYMEKLEPTLRTYLTKLREEAY 326



 Score = 37.3 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 89/264 (33%), Gaps = 12/264 (4%)

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
           K  + + +      +K  +     +  L     +DE+ ++  + S+D    +   + V  
Sbjct: 81  KDVLRDLIDQQLLVDKGADLGISADAELI--KRLDEMRKQMNLASMDDLENEAKKQGVSF 138

Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
           ++       + +  RV  ++       T       Y   + +   P + R L E+L  V 
Sbjct: 139 EDFKQNMKNQIITQRVISQEVGSHIQITKDEEQKFYDAHKSEMERPEQVR-LSEILVPVD 197

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN-ENKFFGY 546
            +      A     KA  ++ E  K GK F D+ K   A      Q   +   +      
Sbjct: 198 AE--KDPNATAAQQKAEGIIAEL-KAGKKFDDVAKAESAGPTAKEQGGDLGYFKRGVLAK 254

Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQE-KDKFISYLTQMMNKDL 602
                VF          PI     +V+ KVT    S V P+Q+ + K    +     +  
Sbjct: 255 QLEDTVFPLKEGEY-TEPIRTKQGFVIIKVTEHQQSGVPPLQQIEPKLQEAVYMEKLEPT 313

Query: 603 LDSVIAYLKSQYSVTVHDNLIQRY 626
           L + +  L+ +  + V    I   
Sbjct: 314 LRTYLTKLREEAYIDVKPGYIDTA 337


>gi|302380403|ref|ZP_07268872.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|303235180|ref|ZP_07321799.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4]
 gi|302311807|gb|EFK93819.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|302493667|gb|EFL53454.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4]
          Length = 250

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 5/159 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
           F +      + +S+DEL+  YE +K+ +      T   ++  ++  A E  + +     F
Sbjct: 85  FAMANIINSVRVSDDELKEYYESHKDNFKVQPTFTASHILVESEDLAKEIKEKIDNDGDF 144

Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            QLA+E     S      LG+F +  +      +++    + GD    +   FGY I ++
Sbjct: 145 AQLAKEYSTCPSKEQGGDLGTFQQGQMVK-EFENALIE-NEIGDIVGPVKTQFGYHIINI 202

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +       SF+E K ++   +   K  +   +   RL+
Sbjct: 203 KDKTEGKVKSFEEAKNEVKQTLLQLKQQQAYIDATDRLQ 241


>gi|255524040|ref|ZP_05391002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           carboxidivorans P7]
 gi|296186897|ref|ZP_06855298.1| PPIC-type PPIASE domain protein [Clostridium carboxidivorans P7]
 gi|255512327|gb|EET88605.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           carboxidivorans P7]
 gi|296048611|gb|EFG88044.1| PPIC-type PPIASE domain protein [Clostridium carboxidivorans P7]
          Length = 341

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/391 (13%), Positives = 110/391 (28%), Gaps = 81/391 (20%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVS----GSSTVVSVGRQKVPFSSFINSWKQE--LGM 66
           V K+   VL   F    +   + + +     +S V +V  +K+      ++      +  
Sbjct: 4   VKKLVSAVLISAFAFSTVGCNMIAKTPEAIKNSVVATVNGEKITRGELDSNPNLMGVVAQ 63

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           I Q+ G            L ++                         +V           
Sbjct: 64  IKQQYGEDYEKNDDAKSILKEQ-----------------------KAQVLDT-------- 92

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
                              + E + I+   K L       +     +    +  Q     
Sbjct: 93  -------------------MIEAKVIEQKAKELK------VLPDDAKLKAEVDKQISNIK 127

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQ-WFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
            +    D             + +   L   ++ + K+            +    +   K 
Sbjct: 128 QQQFGNDATKFQAA--LKQQNLTEETLKNMYYTQMKNQ---------ETVTNVTNNVGKD 176

Query: 246 IEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           +++ +  +Q  Y+ N  K+   P+      ++   + EA +    L KG+ F ++A+E  
Sbjct: 177 VKVDDKSIQDYYKNNPYKFTEKPDRIHTAHILVKTEDEAKKVKARLDKGEDFAKVAKEVS 236

Query: 305 KSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
              +    G         +   D +      +L KKG  +  +   FGY I      +  
Sbjct: 237 TDTATKDKGGDLGFVNYVDSGFDAAFMAGAIAL-KKGAVSAPVKSQFGYHIIKCIEKEEY 295

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
                  VK  I  Q+   +  +K ++    
Sbjct: 296 PVKKIDAVKAQIKTQLETEQKQKKYQDKVAE 326


>gi|291165957|gb|EFE28004.1| PPIC-type PPIASE domain protein [Filifactor alocis ATCC 35896]
          Length = 247

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 5/160 (3%)

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           I F V++  +   I+++E +A YE++K  +          ++  N+  A E +  + KG 
Sbjct: 80  IQFGVNKIVEVEPITDEEKRAFYEEHKNVFVQSGEVEASHILVDNEALAREIYIKIDKGI 139

Query: 295 KFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F +LAE+        S  SLG F +  +         F+L +  + +  +   FGY + 
Sbjct: 140 PFEELAEKHSSCPSKSSGGSLGKFGRGQMV-PEFESVAFALEEN-EVSVPVKTQFGYHVI 197

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            V    P   ++F  ++ +I   +   K  E+  +  + L
Sbjct: 198 RVDKKYPQQQIAFDLIEPEIEATLLEKKQHEQYVKTIEEL 237


>gi|86130561|ref|ZP_01049161.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
 gi|85819236|gb|EAQ40395.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
          Length = 643

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 99/679 (14%), Positives = 196/679 (28%), Gaps = 115/679 (16%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +  V F +        S+     ++ V   +V  + F+  +++ L +I+           
Sbjct: 4   LFIVCFFM-----PFVSLGQQEVLLKVNNDEVTTADFVRVYEKNLALIND---------- 48

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                  ++ LD  +      Q     GL  +      EIA    +  +  K        
Sbjct: 49  -TEENSPEQYLDLFIDYKLKVQEAYRKGLH-NKASYKKEIAS---YRTQLGK-------D 96

Query: 140 RLAREGINEKEYIDHY---TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
            L    + +K   + Y      L    ++        P + L    K      R V    
Sbjct: 97  YLNDVQVTDKLVEEAYNRTKNELRARHILVRVRPDALPKDTLAAFNKLLEARKRIVAGED 156

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN---DEL 253
                     DPS             +    +  ++ Y   +     K  E+S       
Sbjct: 157 FAFIASKYSEDPSAKQ-------NGGDLGWFKAFKMVYPFENAAYTTKVNEVSQPFRTSF 209

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKKFIQLAEEQG 304
                +      +     V  ++            +++  E    L KG  F  LA    
Sbjct: 210 GYHIVQPTASRIAQGSVQVAHIMIALKQKDSSIIAEEKIKEVRALLAKGAAFETLALNYS 269

Query: 305 KSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
              +    G     F K  +      ++ F L K GD +      FG+ I  +    P  
Sbjct: 270 DDKNSAKKGGVLSAFEKGQLSSSKFENTAFDLKKVGDISEPFKTKFGWHILKLIKKNP-- 327

Query: 361 TVSFQEVKKDIANQMRIT-KASEKVKEDYKRLEEFL---------ALGTSMDEISRREKI 410
            +SF+++K  +  ++    +A    +E   RL E           +  TS+      EK+
Sbjct: 328 VLSFEKMKPSLTKRVTKDSRARVLSQELNTRLREQYKITQEPEITSYFTSVLPEVYEEKL 387

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR-----VFGKDDPLSKDHTVALPDGSYMW 465
                           G +V       Q+L +      +   D   K       + + + 
Sbjct: 388 NVFTDDSALSKEAFKVGDQVITYKDIAQVLEKKYRKVPYVSRDYFVKREVENFVNNALIT 447

Query: 466 VQ--------------IKESIPARDRKLEEVLTDV------------------KKDWKTV 493
                           I E         + + T++                   + +K +
Sbjct: 448 YHKSHLEEQDSDFGLLINEYK-EGLLLFDLLKTEIWDKAQKDSVGLNTFYVNNIERYKAL 506

Query: 494 KT-----AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548
           +T           K     L+ + +G+N   +   L     +   I   D   +     G
Sbjct: 507 QTFTTRVFTTSQKKIASTYLKRNTQGENSNSVLSVLKKKHDSPIIITLKDFVKEDLPMSG 566

Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
           I ++  G  E++K      G +YVV++V +               +     K L D  + 
Sbjct: 567 IVKI--GDKELLK-----EGGNYVVYEVVSINEAMTNTLQNVRGQVMSDYQKFLEDIFVN 619

Query: 609 YLKSQYSVTVHDNLIQRYL 627
            L+   ++TV+  ++ + +
Sbjct: 620 RLREDSNITVNKTVLNKLI 638


>gi|114331215|ref|YP_747437.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
 gi|114308229|gb|ABI59472.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
          Length = 424

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/416 (13%), Positives = 136/416 (32%), Gaps = 63/416 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +         +  +  + ++     N +      L+K++L+ L+     
Sbjct: 21  DRIVAVVNEEVITQQETNELLQNTIQQLQKQ-----NIQLPSMEVLEKQLLERLIIKRIQ 75

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +++GL      +   + R      +DN  + D F   L +EG N   + D     +
Sbjct: 76  LQRAKEVGLSVSDNDLDQTLRRI----VQDNHLTMDEFRQVLLQEGTNLSLFRDEIRDEI 131

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKR-----------------FYFENRSVDYIVLNNRH 201
             + +    +   +  +   +D                         +  +D   +N RH
Sbjct: 132 LMSRLKEQEINSRVNVTESEIDNFLENQANSPAANEEYRIAHILVQTSEQMDEAQINTRH 191

Query: 202 VPAIADPSN-------AVLTQWFEKYKDNYRAPE-------YKRISYILFDVHEKEKKIE 247
             A A   +       A ++  +    D  +  E            +    +  +  +I 
Sbjct: 192 KRAEAAYEDLRQGISFAQVSAEYSDATDAMQGGELGWRPLGQIGSPFAELLLQMQPGEIT 251

Query: 248 -ISNDELQAEYEKNKEKYFSP------EIRTVEQLVFP-----NQKEA----DEAFQSLK 291
            +    +     K  E+          E    + ++       ++++A    D+  + + 
Sbjct: 252 PVVRSPIGFHILKLLERRQQEKSVTIIEQTHAQHILIKVSEIISEEDAHQLIDQIMERIH 311

Query: 292 KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            G  F+++A+   +  S      LG  S           ++ +L   G  +  +  SFG+
Sbjct: 312 NGADFMEMAKAHSEDASASAGGDLGWVSPGDTV-PEFEQAMNALL-PGQISQPVRTSFGW 369

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            +  V   + S  VS Q+ ++     +   KA    +E  ++L +   +   ++ I
Sbjct: 370 HLIKVIERR-SQDVSEQKQRETARKTIHARKADAVTQEWLQQLRDQAYVEYKVEGI 424



 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 86/270 (31%), Gaps = 33/270 (12%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             ++ R  +      G+  S+  LDQ  R     R V    L       +       L +
Sbjct: 68  RLIIKRIQLQRAKEVGLSVSDNDLDQTLR-----RIVQDNHLTMDEFRQVL------LQE 116

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
                   +R      I        E   ++ ++  E+    E       + E   +  +
Sbjct: 117 --GTNLSLFRDEIRDEILMSRLKEQEINSRVNVTESEIDNFLENQANSPAANEEYRIAHI 174

Query: 276 VFPNQ------------KEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYI 320
           +                K A+ A++ L++G  F Q++ E   +        LG      I
Sbjct: 175 LVQTSEQMDEAQINTRHKRAEAAYEDLRQGISFAQVSAEYSDATDAMQGGELGWRPLGQI 234

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI--KPSFTVSFQEVKKD-IANQMRI 377
                A+ +  + + G+ TPV+    G+ I  +     +       ++     I  ++  
Sbjct: 235 GSP-FAELLLQM-QPGEITPVVRSPIGFHILKLLERRQQEKSVTIIEQTHAQHILIKVSE 292

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRR 407
             + E   +   ++ E +  G    E+++ 
Sbjct: 293 IISEEDAHQLIDQIMERIHNGADFMEMAKA 322


>gi|312792832|ref|YP_004025755.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179972|gb|ADQ40142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 339

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/388 (14%), Positives = 124/388 (31%), Gaps = 88/388 (22%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM--IS 68
           +  A + L++L          + +  V  +  V  V  +K+    F  +++ ++    + 
Sbjct: 11  SIAAVVLLIILIAV-----TPEIVRYVDENRAVAIVNGEKITKKEFAINYRSQINYYGLD 65

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
           +        ++     + + +LD L+      Q      +            +      K
Sbjct: 66  KAFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQARKRNITLSSAEKKAIDQQIE--QYK 123

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
            +  S   F   L   G  E EY D       ++ +V                       
Sbjct: 124 SDSQSGAEFKQYLQTIGATENEYKDQV----IKSQIVSKLY------------------- 160

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
                        V      S+A +  ++  +K ++      + S+ILF V++       
Sbjct: 161 -----------DEVTKNQKASDAEIESYYNSHKSDFVE---VKASHILFKVND------- 199

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-- 306
                                    +     +K+A+E  Q +K G+ F +LA++  +   
Sbjct: 200 ------------------------SKEEAAKKKKAEEILQMIKVGQNFEKLAQKYSEDET 235

Query: 307 --LSDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                  +G   K  I         +++FSL   G+ + ++  + G+ I  V++ K    
Sbjct: 236 TKQKGGDMGYLRKNIIIQYYGNEFGNAVFSLG-IGEISNIVQTNDGFHIIKVTDRK---Q 291

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYK 389
           +   +VK +I + +   K  E  +   +
Sbjct: 292 LLLSDVKDEIKSTIESQKKDEYYQSLLE 319


>gi|293375521|ref|ZP_06621798.1| peptidylprolyl isomerase PrsA1 family protein [Turicibacter
           sanguinis PC909]
 gi|325840213|ref|ZP_08166980.1| peptidylprolyl isomerase PrsA1 family protein [Turicibacter sp.
           HGF1]
 gi|292645861|gb|EFF63894.1| peptidylprolyl isomerase PrsA1 family protein [Turicibacter
           sanguinis PC909]
 gi|325490361|gb|EGC92686.1| peptidylprolyl isomerase PrsA1 family protein [Turicibacter sp.
           HGF1]
          Length = 239

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 8/162 (4%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
                + +  K I +++ E +A Y +N++++   E      ++   + +A++    + +G
Sbjct: 75  IFQHSIGQMFKTINVTDAECEAYYNENQDQF-KEETVRAAHILVDEEAKAEDLLNQINEG 133

Query: 294 KKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F QLA E     S      LG F +  +       + F+L   G+ + V+   FGY +
Sbjct: 134 ADFHQLASEHSSCPSGARGGDLGDFGRGQMV-PEFEQAAFAL-NIGEISGVVKSQFGYHL 191

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             + + K   TV F +V   I   +   K +E      + L+
Sbjct: 192 IKLLDKKE--TVPFTDVLPQIKQYLVTKKQNEMYSAFTQGLK 231


>gi|301054383|ref|YP_003792594.1| peptidylprolyl isomerase [Bacillus anthracis CI]
 gi|300376552|gb|ADK05456.1| peptidylprolyl isomerase [Bacillus cereus biovar anthracis str. CI]
          Length = 280

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 84/237 (35%), Gaps = 27/237 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNA--VLTQ 215
           S  ++V    G +  S+      + +  +N S  V   VLN+++     + +     L  
Sbjct: 24  SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKATDEEVTKQIKELKT 83

Query: 216 WFEKYKDNYR------APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
                 + Y         +  +    L    EK  K  ++  E++  Y+           
Sbjct: 84  KMGNNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKEIKDHYK---------PK 134

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSL 325
                ++  ++K A E  + L  G+ F  LA++  +          L  F    +     
Sbjct: 135 LQASHILVKDEKTAKEIKEKLNNGEDFAALAKQYSEDPGSKEKGGDLSEFGPGMMVK-EF 193

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            D+ + L + G  +  I  SFGY I  ++  K      ++E K +I  ++   +  +
Sbjct: 194 EDAAYKL-EVGQVSEPIQSSFGYHIIKLTGKKE--LKPYEEEKVNIRKELEQQRIQD 247


>gi|242309441|ref|ZP_04808596.1| cell-binding factor 2 [Helicobacter pullorum MIT 98-5489]
 gi|239524012|gb|EEQ63878.1| cell-binding factor 2 [Helicobacter pullorum MIT 98-5489]
          Length = 272

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG----- 293
           + ++ +K+ +S+ E++  Y  NK K+  PE+  V  ++  ++ EA      +K+      
Sbjct: 102 MRQEMEKVRVSDSEIEKFYNDNKTKFVQPEVAKVRHILVNSETEAKNIISDVKRAGKNSL 161

Query: 294 KKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            KF +LA+ + K     +   +G  ++  +     AD+ F L K       +   FGY +
Sbjct: 162 AKFEELAKSKSKDGSAQNGGDVGWIARGQVV-PEFADAAFKLNKGQYTQTPVKTQFGYHV 220

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            +V + KP+ T++ ++VK  I   +R+ K  E VK++ + L + 
Sbjct: 221 IYVEDKKPTTTLALKDVKGQIEQNLRLMKFQENVKKEGQELRKK 264


>gi|319404585|emb|CBI78191.1| peptidyl-prolyl cis-trans isomerase [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 308

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 62/149 (41%), Gaps = 4/149 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           +I++ +++A Y+K        +      ++   ++EA++  + L KG+ F ++A++    
Sbjct: 128 KIADADVKALYDKEIAALPKEDEIKARHILVKTKEEAEKVIKRLNKGESFEEIAKKDSTD 187

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG FS+  +      ++ F+L         +   FG+ +  + + +      
Sbjct: 188 GSSAVGGDLGYFSRGQMVKP-FEEAAFNLKVGEYTKKPVESPFGWHVIKIEDRRLKQPPV 246

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
           F +VK  +  Q+        + +   ++ 
Sbjct: 247 FDDVKDVLRTQLIREHYQTLITDLRGKIN 275


>gi|91974780|ref|YP_567439.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB5]
 gi|91681236|gb|ABE37538.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB5]
          Length = 305

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 72/168 (42%), Gaps = 5/168 (2%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E+ R   ++ D+   E K   +ND ++  YE   ++    +      ++  ++ +A    
Sbjct: 110 EFARNRLLMDDLLAVEGKNATTNDAMKKVYEDAAKQISGEQEVHARHILVESEDDAKAVA 169

Query: 288 QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           + LKKG  F +LA+++ K         LG F+KE +     +   F++ + G  +  +  
Sbjct: 170 EELKKGADFAELAKKKSKDPGASDGGDLGFFTKEQMV-PEFSAVAFAM-EPGKISDPVKS 227

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            FG+ I  V   +     +F +VK  I   +     ++ V +  +  +
Sbjct: 228 QFGWHIIKVEEKRSRKPPTFDQVKPQIEQYVTRKAQADYVAQLRQAAK 275



 Score = 40.4 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 41/118 (34%), Gaps = 1/118 (0%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
           S    + V E  K+G +F ++ K        ++  +      +    +  +  F+     
Sbjct: 161 SEDDAKAVAEELKKGADFAELAKKKSKDPGASDGGDLGFFTKEQMVPEFSAVAFAMEPGK 220

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +   P+++   + + KV   +       D+    + Q + +      +A L+    V 
Sbjct: 221 I-SDPVKSQFGWHIIKVEEKRSRKPPTFDQVKPQIEQYVTRKAQADYVAQLRQAAKVE 277


>gi|326318802|ref|YP_004236474.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375638|gb|ADX47907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 299

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 10/171 (5%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAF 287
           +Y+     +      ++    +  Y+   E++  PE   V  ++       ++ + ++  
Sbjct: 106 AYLAKVDKDNMPSDAVAEGLARNIYKAKPERFKVPEQVQVRHILIAGTGADSRAQIEKIE 165

Query: 288 QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           Q LK G  F QLA+E    +G +     LG F    +       + F+L K G  + ++ 
Sbjct: 166 QELKGGADFAQLAKERSADKGSAAKGGDLGFFEAGKMV-PEFDKAAFALTKPGQLSGIVE 224

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
             FGY I  +     + T SF EV+ ++  ++R     E    D + L++ 
Sbjct: 225 SKFGYHILQLEGRHAARTRSFDEVRSELMQEVRANVQQEARVADAQALQQE 275



 Score = 45.8 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 7/149 (4%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           +   +++E+ L  G    ++++               G    GK V       +     F
Sbjct: 158 RAQIEKIEQELKGGADFAQLAKERSADKGSAAKGGDLGFFEAGKMV------PEFDKAAF 211

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
               P      V    G Y  +Q++    AR R  +EV +++ ++ +     E   + A 
Sbjct: 212 ALTKPGQLSGIVESKFG-YHILQLEGRHAARTRSFDEVRSELMQEVRANVQQEARVADAQ 270

Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
            L  E     +             + T  
Sbjct: 271 ALQQEAKINKEAIEAFAAGYNPQPVKTAP 299


>gi|222823915|ref|YP_002575489.1| major antigenic peptide PEB-cell binding factor [Campylobacter lari
           RM2100]
 gi|222539137|gb|ACM64238.1| major antigenic peptide PEB-cell binding factor [Campylobacter lari
           RM2100]
          Length = 271

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 27/245 (11%)

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS-NAVLTQWFEKY 220
            +     + G + ++L  +Q K    +      ++ + +      DPS    L       
Sbjct: 36  NEFFAPMLRGAKITDLPAEQKKAIIDQYIVQQLVLKDAKAQKIENDPSYKEELE------ 89

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
               RA E   ++       +    I+  + + +  YE NK+K+  P     + ++  ++
Sbjct: 90  ----RAKEAILVNIYQ---KKIFDSIKNDDAKAKKFYEANKDKFTKPAQVKAKHILVTSE 142

Query: 281 KEADEAFQSLKK------GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIF 330
           KEA +    L K        KF QLA+E+    G S     LG F++  +     AD+ F
Sbjct: 143 KEAKDIIAELSKLSGKALNDKFAQLAKEKSIDKGSSAQGGDLGWFAESTMVKP-FADAAF 201

Query: 331 SLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           S+ KKG  +   +   FGY I    + +   T+S+ EVK  I + +++ +  E + +  +
Sbjct: 202 SM-KKGTISKTPVKSDFGYHIILKEDARAKSTMSYNEVKAGIESNIKMEEFKELMNKKAQ 260

Query: 390 RLEEF 394
            L + 
Sbjct: 261 ELLQK 265



 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 4/167 (2%)

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           I        +    F E  KD   +    KA   +    K  ++ +A  + +   +  +K
Sbjct: 104 IFDSIKNDDAKAKKFYEANKDKFTKPAQVKAKHILVTSEKEAKDIIAELSKLSGKALNDK 163

Query: 410 IVSIDLPLVDFAGKDVKGKEV---AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
              +        G   +G ++   A     +      F           V    G ++ +
Sbjct: 164 FAQLAKEKSIDKGSSAQGGDLGWFAESTMVKPFADAAFSMKKGTISKTPVKSDFGYHIIL 223

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           + +++         EV   ++ + K  +  E ++ KA +L+ +   E
Sbjct: 224 K-EDARAKSTMSYNEVKAGIESNIKMEEFKELMNKKAQELLQKAKVE 269


>gi|47097568|ref|ZP_00235100.1| protein export protein [Listeria monocytogenes str. 1/2a F6854]
 gi|224498964|ref|ZP_03667313.1| hypothetical protein LmonF1_04383 [Listeria monocytogenes Finland
           1988]
 gi|254826892|ref|ZP_05231579.1| export protein [Listeria monocytogenes FSL N3-165]
 gi|254831344|ref|ZP_05235999.1| hypothetical protein Lmon1_08297 [Listeria monocytogenes 10403S]
 gi|254899079|ref|ZP_05259003.1| hypothetical protein LmonJ_04684 [Listeria monocytogenes J0161]
 gi|254912780|ref|ZP_05262792.1| protein export protein [Listeria monocytogenes J2818]
 gi|254937107|ref|ZP_05268804.1| export protein [Listeria monocytogenes F6900]
 gi|255025820|ref|ZP_05297806.1| hypothetical protein LmonocytFSL_04835 [Listeria monocytogenes FSL
           J2-003]
 gi|284802666|ref|YP_003414531.1| hypothetical protein LM5578_2422 [Listeria monocytogenes 08-5578]
 gi|284995808|ref|YP_003417576.1| hypothetical protein LM5923_2373 [Listeria monocytogenes 08-5923]
 gi|47014054|gb|EAL05055.1| protein export protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258599272|gb|EEW12597.1| export protein [Listeria monocytogenes FSL N3-165]
 gi|258609709|gb|EEW22317.1| export protein [Listeria monocytogenes F6900]
 gi|284058228|gb|ADB69169.1| hypothetical protein LM5578_2422 [Listeria monocytogenes 08-5578]
 gi|284061275|gb|ADB72214.1| hypothetical protein LM5923_2373 [Listeria monocytogenes 08-5923]
 gi|293590774|gb|EFF99108.1| protein export protein [Listeria monocytogenes J2818]
          Length = 293

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 30/213 (14%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247
           +      S+  + + F +YK  Y                    ++ Y L      E   +
Sbjct: 62  LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 121

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  YE      + P+I TV  ++  ++ +A E  Q LK G+KF  LA+E     
Sbjct: 122 TSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGEKFADLAKEYSTDT 175

Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G     + P   D +   + ++L  KGD +  +   +GY I  +   KP+   +F
Sbjct: 176 ATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233

Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLE 392
           ++ KK +       Q+      + +K++YK   
Sbjct: 234 EKDKKAVKASYLESQLTTENMQKTLKKEYKDAN 266


>gi|118581988|ref|YP_903238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
 gi|118504698|gb|ABL01181.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
          Length = 321

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 72/191 (37%), Gaps = 18/191 (9%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           D Y++   +++  +     E   +I++   E++A Y +N   Y   E      + F   +
Sbjct: 123 DQYKSQLREQLERLRLVSMEVRSRIQVGESEVRAYYNENLATYSEDETFRARHIFFKTNE 182

Query: 282 EADE------------AFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSL 325
           +A                   K GK F +LA    +          LGSF K  +    L
Sbjct: 183 KAPAEEIKRTMNTALMVLAEAKSGKDFAELARTYSEDPAAKKDGGDLGSFKKGDM-QPEL 241

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
             +I  + K+G+ + +++   G+ +  +    P      + VK +I   +   K+ E+ K
Sbjct: 242 EQAILGM-KQGEVSELVYTPLGFHLIKLEARTPGTPKPLESVKSEIEETIYRKKSEERFK 300

Query: 386 EDYKRLEEFLA 396
           +    +    +
Sbjct: 301 KWATEMRAKAS 311


>gi|296503398|ref|YP_003665098.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
 gi|296324450|gb|ADH07378.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
          Length = 268

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 90/239 (37%), Gaps = 31/239 (12%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV----LTQ 215
           S  ++V    G +  S+      + +  +N S    ++  + +      ++      L +
Sbjct: 12  SSDNIVTTKSGSISESDFNKKLKENYGKQNLS---EMVVEKVLHDKYKVTDEEVTKQLKE 68

Query: 216 WFEKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
             +K  DN+         +  +  +    L    EK  K  ++  +++  Y+        
Sbjct: 69  LKDKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK-------- 120

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---V 323
                V  ++  ++K A E  + L  G+ F  LA++  +       G    E+ P     
Sbjct: 121 -PKLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK 179

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
              D+ + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +
Sbjct: 180 EFEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 235


>gi|218234193|ref|YP_002367583.1| peptidylprolyl isomerase [Bacillus cereus B4264]
 gi|218162150|gb|ACK62142.1| foldase protein PrsA [Bacillus cereus B4264]
          Length = 280

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 100/273 (36%), Gaps = 33/273 (12%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV----LTQ 215
           S  ++V    G +  S+      + +  +N S    ++  + +      ++      L +
Sbjct: 24  SSDNIVTTKSGSISESDFNKKLKENYGKQNLS---EMVVEKVLHDKYKVTDEEVTKQLKE 80

Query: 216 WFEKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
             +K  DN+         +  +  +    L    EK  K  ++  +++  Y+        
Sbjct: 81  LKDKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK-------- 132

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---V 323
                V  ++  ++K A E  + L  G+ F  LA++  +       G    E+ P     
Sbjct: 133 -PKLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK 191

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D+ + L + G  +  +  SFGY I  + + K      ++E K++I  ++   +  + 
Sbjct: 192 EFEDAAYKL-EVGQLSEPVKSSFGYHIIKLMDKKE--LKPYEEEKENIRKELEQQRIQD- 247

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
             + ++++   L     +    +  K    +L 
Sbjct: 248 -PQFHQQVTRELLKNADIKVSDKDLKDTFKELE 279


>gi|269792688|ref|YP_003317592.1| hypothetical protein Taci_1078 [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100323|gb|ACZ19310.1| hypothetical protein Taci_1078 [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 340

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/395 (14%), Positives = 126/395 (31%), Gaps = 89/395 (22%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59
           M++ +R   +  +  + +V +   F  +G+       SG    V  +  +K+  S     
Sbjct: 2   MMQYLRNNVKGIMIGVVVVFIVSCFAGYGMYVRGRGSSGGDYPVAKLDGKKIMRSQVEMR 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            ++    ++++ G  V S       + + ILD++V G  L +  +  G++     V   +
Sbjct: 62  LRE----VAEQFGDRVTS--GDVPMIRRMILDDIVVGMELTKAAKAEGIKVAKEEVDQYL 115

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
           A              + +   L R G+ E+E      + ++   ++              
Sbjct: 116 ASMQA-QFPT----KEAYDEYLKRSGMTERELRRKVEENIAVGKLMEKVTAS-------- 162

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                                     A      + ++++  KD +               
Sbjct: 163 --------------------------ASVDAGEVRKFYDATKDAF--------------- 181

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                                   +  PE  TV  + F  ++ A      L KG+ +  +
Sbjct: 182 ------------------------FKRPEGYTVNVVAFRGKEAAQRGRTRLLKGEAWDSV 217

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL--AKKGDFTPVIH-GSFGYVIAHVSNI 356
                  L + +       ++    LAD + S+   K G ++ ++  GS  Y++    + 
Sbjct: 218 MGAMSGDLGNFTP-YDKPIFVSKKDLADDLKSVISLKVGSYSNLVKVGSDDYLMVLKRSN 276

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +    ++F EVK+ I   +   K  +  +     L
Sbjct: 277 EKERVMAFDEVKEQIEGVLLDQKRGQMQRAYVADL 311


>gi|153007318|ref|YP_001381643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030891|gb|ABS28659.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 323

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/370 (14%), Positives = 115/370 (31%), Gaps = 72/370 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V  + V  S         L    Q +      E A++  L +   D++V+   L
Sbjct: 23  DRVAALVNGEVVTLSELAERAGPALLKAEQ-LPAGAERESAQTAALKR-AFDDVVAERLL 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
                ++ LEA   +V   +        + N F        L  +GI+   +  +     
Sbjct: 81  QSKAAELQLEATEAQVDEAVEDI----KRRNGFDDAALERALKEQGIDRATFRANV---- 132

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                                         R  D  ++    V +    S+  L  +++ 
Sbjct: 133 -----------------------------KREYDAFLVLQYQVRSKVKVSDDDLRNYYQS 163

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +   +   +  ++ +I   + E   K +                                
Sbjct: 164 HPQEFGGEDEVKVRHIFLPMPEGATKAQ----------------------------QAKV 195

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           + + +   Q LK G+ F  +A E  K   +     LG   +  I D +L D+ F+L + G
Sbjct: 196 EDQMNRVLQRLKTGEDFAAVAREVSKGPSAAEGGDLGWLRRGTI-DKALEDTAFAL-QAG 253

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
             +  +    G  +  V   + +   SF++ K++I   +   +A    ++    L     
Sbjct: 254 QLSQPVRAGPGLHLFKVEERRVAGEKSFEDAKEEIRAHLVDQQAGTYRQQLIAELRRDAL 313

Query: 397 LGTSMDEISR 406
           +   + E+++
Sbjct: 314 IEAKLPELAQ 323


>gi|164688004|ref|ZP_02212032.1| hypothetical protein CLOBAR_01649 [Clostridium bartlettii DSM
           16795]
 gi|164602417|gb|EDQ95882.1| hypothetical protein CLOBAR_01649 [Clostridium bartlettii DSM
           16795]
          Length = 302

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/358 (11%), Positives = 109/358 (30%), Gaps = 72/358 (20%)

Query: 39  GSSTVVSVGRQKVPFSSFINS---WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
            +S    VG  +                               +     + ++++  ++ 
Sbjct: 5   SNSNAFKVGETEFSNEEVDKVKSILTATQSYTDADYLAQFKESKDNDDKIKQEVISYMID 64

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              + Q  +   ++     V  + ++       +       +   L   G++E    +  
Sbjct: 65  NEVVYQQAQKEKIKVTDDEVNQKYSQIEKMLDTN-----QEYKKLLDDAGVDEDYLKETI 119

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            K L+                                        +       ++  + +
Sbjct: 120 KKDLAVQKYR----------------------------------ENYEQDLKVTDKEVEK 145

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +++++KD+++    +    ++  + +  K ++ S  E                       
Sbjct: 146 YYKEHKDDFKEESVEAYHILVSTLDDNNKPVDDSKKE----------------------- 182

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSL 332
               + +A+   + +K G  F ++A+E     S    G +   +  D          F L
Sbjct: 183 --ELKSKAESLLKEIKNGGDFEKIAKENSDDKSSGKKGGYLGYFTKDSKNAQFTKEAFKL 240

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            +KG  + V    FGY I  V+N K +   S ++ +++I N++   K  ++V    ++
Sbjct: 241 -EKGQVSNVFETPFGYEIVKVTN-KKTEQKSLEDSREEIVNRILADKYLDQVNSLREK 296


>gi|296332416|ref|ZP_06874877.1| molecular chaperone lipoprotein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673697|ref|YP_003865369.1| molecular chaperone lipoprotein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150334|gb|EFG91222.1| molecular chaperone lipoprotein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411941|gb|ADM37060.1| molecular chaperone lipoprotein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 284

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 88/202 (43%), Gaps = 27/202 (13%)

Query: 196 VLNNRHVPAIADPSNAV----LTQWFEKYKDNYRAPE--------YKRISYILFDVHEKE 243
           ++  + +      ++      L ++  +  D Y A E         +++ Y L      +
Sbjct: 57  LVQEKVLDKKYKVTDKEIDNKLKEYKTQLGDQYTALEEQYGKDYLKEQVKYELLTQKAAK 116

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
             I++++ + +  +E  K+K           ++  ++K A+E  + LKKG+KF  LA+E 
Sbjct: 117 DNIKVTDADTKEYWEGLKDKI------RASHILVADKKTAEEVEKKLKKGEKFEDLAKEY 170

Query: 304 GKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
               S      LG F+K+ +     + + F L K G+ +  +   +GY I   +  +   
Sbjct: 171 STDNSASQGGDLGWFAKDGMV-AEFSKAAFKL-KTGEVSDPVKTQYGYHIIKKTEERGK- 227

Query: 361 TVSFQEVKKDIANQMRITKASE 382
              + ++KK++ +++   K ++
Sbjct: 228 ---YDDMKKELKSEVLEQKLND 246



 Score = 37.3 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 3/125 (2%)

Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
              K  + V +  K+G+ F D+ K        +   +           +     F     
Sbjct: 145 ADKKTAEEVEKKLKKGEKFEDLAKEYSTDNSASQGGDLGWFAKDGMVAEFSKAAFKLKTG 204

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSV 616
            V   P++    Y + K T  +      K +  S + +    D   +   +  +  +  V
Sbjct: 205 EV-SDPVKTQYGYHIIKKTEERGKYDDMKKELKSEVLEQKLNDTTAVQEAVQKVMKKADV 263

Query: 617 TVHDN 621
            V D 
Sbjct: 264 EVKDK 268


>gi|289435560|ref|YP_003465432.1| prsA protein, protein export protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171804|emb|CBH28350.1| prsA protein, protein export protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 295

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 31/242 (12%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY------------RAPEYKR--ISYILFDVHEKEKKIE 247
           +      ++  +   F+KYK  Y               E  +  + Y +      E   +
Sbjct: 62  LGDKYKVTDEQVDSEFKKYKSQYGDQFDAVLAQSGLTEETFKSQLKYNMLVQKATEANTD 121

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  Y+      + P+I TV  ++  ++ +A E  Q LK G+KF  LA+E     
Sbjct: 122 TSDKALKEYYKT-----WQPDI-TVSHILVADEAKAKEVEQKLKDGEKFADLAKEYSTDT 175

Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G     + P   D +   + ++L  KGD +  +   +GY I  +    P+   +F
Sbjct: 176 ATKDNGGKLAPFGPGKMDPAFEKAAYALKNKGDISDPVKTQYGYHIIQMDE--PATKTTF 233

Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            + KK +       Q+      + +K++YK     +     + +  +     +      D
Sbjct: 234 DKDKKAVKESYLQSQLTTENMQKTLKKEYKDANVKVED-KDLKDAFKDYDGSAKTEESTD 292

Query: 420 FA 421
            A
Sbjct: 293 SA 294


>gi|229496996|ref|ZP_04390701.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316098|gb|EEN82026.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 714

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 116/725 (16%), Positives = 232/725 (32%), Gaps = 140/725 (19%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS-----GSSTVVSVGRQKVPFSSF 56
           L+ IR  +      + ++V+ V  L + + D L S        ++  + +  +K+    +
Sbjct: 4   LQKIRNRAG-----LLIIVIGVALLAFIVGDGLRSGGTLFQMSNNYALKIDGEKIKAEDY 58

Query: 57  INSWKQELGMISQ-----------KIGFVVNSERARSVGLDKKIL--------DNLVSGA 97
               +Q                  ++   +  E  +S+ L+K+          + L++  
Sbjct: 59  HQRLQQLQEAAEANGNHLTDEQRMQLNNQLAEEYIQSIALEKEADALGLKVTPEELIALV 118

Query: 98  TLD---------QFIEDIGLEADH--------GRVWG-EIARSPLFHGKDNKFSHDVFVS 139
             D         QFI  +G+             ++   +IA+ P       +   + + +
Sbjct: 119 LGDGVSPAYQAQQFISQLGINPSDRNAVQTFLEQISDNQIAQLPAEQQGQMRMIKNSWDA 178

Query: 140 RLAREGINEK---EYIDHYTKMLSRTDVVGMFVGGM---------RPSNLLLDQAKRFYF 187
            L     NE+   ++    T+  +   V   F+  +          PS +L D   R   
Sbjct: 179 LLRSVR-NERLGSKFNAIMTRSYAINKVDAQFLSDVPSRDVAVVRTPSTILADTTVRATD 237

Query: 188 -ENRSV---------------DYIVLNNRHVPAIADPSNA---------------VLTQW 216
            E R                     +N    P+  D S+A                 +  
Sbjct: 238 DEVREYYNKRPRMFIQKYPFTRVEYINVAIRPSAKDYSDALALMNKTRTSLLGASDASTI 297

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYE-----------KNKEKY 264
              + + + APEY      L D+      +E I + E+ A              K   K 
Sbjct: 298 TRNHSEAF-APEYYMSGQELRDIQLPSSLVEFIESSEVGAVNTPSIENDSYSLVKVMAKK 356

Query: 265 FSPEIRTVEQLVFP--NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF----SKE 318
            +P       +V    N  +AD    ++  G  F  +A          + G +     + 
Sbjct: 357 SAPSGVQARIIVLDSLNATKADSIVGAINGGAAFADMAMRYSADPQTKAQGGYIIFQDRM 416

Query: 319 YIPDVSLADSIFSLAKKGDFTPV-----IHGSFGY--VIAHVSNIKPSFTVSFQEVKKDI 371
            +PD +L +++ ++ K      V        + G   VI  V+   P  T      K  I
Sbjct: 417 GMPDTTLTEAMATMQKLDTLYKVPVGRAFTSTLGATKVIMQVAKAMPEAT------KYKI 470

Query: 372 AN-QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           A   + +T +     E Y  +   LA G S DE+++  +   +++  V  A  +     +
Sbjct: 471 AYINLPVTFSEGTFSEKYSTINNILASGKSFDEMAKEAEAKGLEV--VRDARVEPTSINL 528

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
           A IP   + +  +         +      D + +   +KE +PA  +  E+V  D++   
Sbjct: 529 ANIPSSREAVSWLLKAKPGEVNEKVFRCGDANLVVATVKEQVPAGTQPFEDVKEDIRDYL 588

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
              K       + ++L  +   EGK F D+     A   + + I  +    +      +S
Sbjct: 589 TMEK-------RGDKLATDL--EGKKFADLDGYAVAMQASVDTIPSVSLVARGSVTPMLS 639

Query: 551 QVFSGPVEMVKCFPIENGLSYVVFK-----VTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605
                        P  +G   +V K      T        +  +    L Q +       
Sbjct: 640 AHAMTTAINTISKPFRSGTEVMVVKPLREIKTPVGQSQEAQLRQQRRALGQGLGYRAFQQ 699

Query: 606 VIAYL 610
           ++  +
Sbjct: 700 LMRDM 704


>gi|125973074|ref|YP_001036984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum ATCC 27405]
 gi|256004577|ref|ZP_05429555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 2360]
 gi|281417269|ref|ZP_06248289.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|125713299|gb|ABN51791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum ATCC 27405]
 gi|255991449|gb|EEU01553.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 2360]
 gi|281408671|gb|EFB38929.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|316940705|gb|ADU74739.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 1313]
          Length = 413

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/370 (13%), Positives = 126/370 (34%), Gaps = 35/370 (9%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMI---SQKIGFVVNSERARSVGLDKKILDNLVSG 96
           S  +  V  +++ +  F   + Q+       ++    + +  +     + K++L  L+  
Sbjct: 54  SKVIAEVNGEQILYKDFYFIYSQQAAYYGLTTEDEDSLSDDTKEILNTIKKELLTQLIQQ 113

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               Q  ++ G E    R+                   +     +    + E+  +   +
Sbjct: 114 KLAKQKAKEAGYEVTKERLDEA---------------SEAIEEMIRN--MAEQMKLSSPS 156

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN--RHVPAIADPSNAVLT 214
           +  SR  +          S L   +     +   + +Y+++ +    +      ++  + 
Sbjct: 157 EAESRDFLKEA--RDFINSELKAMRITMDEYIRDTAEYMIVTDFMEDLTKDIVVTDEEIK 214

Query: 215 QWFEKY-KDNYRAPEYKRISYILFDVHEKEKK----IEISNDELQAEYEKNKEKYFSPEI 269
           +++++  K     PE    + +        +     I +  +E Q       E       
Sbjct: 215 KYYDEQLKIQQENPEEAAYAEVQLIQPASSRVKHILIALPEEEQQEYQNLKSEGKDEEAE 274

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-----DISLGSFSKEYIPDVS 324
             +++ +   + +A+E     K G+ F  L +E G+             + +K      S
Sbjct: 275 AYLKEKLEAIKPKAEEVLNKAKNGEDFEALIKEYGEDPGMESEQYKDGYTVTKNSGFIKS 334

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             D+  +L   G+ + ++ G +GY I  V     +   + +E K +I + ++  K +  +
Sbjct: 335 FEDASLALG-VGEISDLVEGPYGYHIIKVYEKTEAKPYTQEEKKSEIESLLKSQKKTNFM 393

Query: 385 KEDYKRLEEF 394
            E  K  E  
Sbjct: 394 NEKMKEWESA 403


>gi|114327287|ref|YP_744444.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315461|gb|ABI61521.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 346

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 60/145 (41%), Gaps = 6/145 (4%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           +++ L+ +++K        E      ++ P + EA      LK G  F ++A+E+ K   
Sbjct: 176 TDEALRKKFDKELAGKPGEEEVHARHILVPTEDEAKRIIAELKAGGDFAKIAKERSKDPG 235

Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSF 364
                 LG F +  +     + + F+L K  + +P  +H  FG+ +      + +   +F
Sbjct: 236 AANGGDLGFFKQADMV-PEFSKAAFAL-KNNEVSPTPVHTQFGWHVIQTLEHRRAPAQTF 293

Query: 365 QEVKKDIANQMRITKASEKVKEDYK 389
           ++ +  +  Q+      + V    K
Sbjct: 294 EQARDQLRQQVIQDGVKDLVTNAMK 318



 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 1/118 (0%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
             +A +++ E  K G +F  I K         N  +    +      +     F+     
Sbjct: 207 EDEAKRIIAEL-KAGGDFAKIAKERSKDPGAANGGDLGFFKQADMVPEFSKAAFALKNNE 265

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           V   P+     + V +    +  P Q  ++    L Q + +D +  ++        V 
Sbjct: 266 VSPTPVHTQFGWHVIQTLEHRRAPAQTFEQARDQLRQQVIQDGVKDLVTNAMKGAKVE 323



 Score = 38.0 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 10/70 (14%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V  V    +      ++ +     + Q    V+             +L+ ++    L
Sbjct: 86  STVVGRVNGADIHLGDLEDAARNLPEQMRQAPPQVIYP----------ILLNQMLQREAL 135

Query: 100 DQFIEDIGLE 109
            Q     GL+
Sbjct: 136 VQAARKEGLD 145


>gi|319406090|emb|CBI79720.1| peptidyl-prolyl cis-trans isomerase [Bartonella sp. AR 15-3]
          Length = 317

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 65/149 (43%), Gaps = 4/149 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           +I++ +++A Y K        +      ++   ++EA++  + L KG+KF ++A++    
Sbjct: 137 KIADADVKALYNKEIAALPKEDEIKARHILVKTKEEAEKIIKRLNKGEKFEEIAKKDSTD 196

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG FS+  +   S  ++ F+L         I   FG+ +  + + +      
Sbjct: 197 GSSAVGGDLGYFSRGQMVK-SFEEAAFNLKVGEYTKKPIESPFGWHVIKIEDRRLKQPPV 255

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
           F +VK+ +  Q+   +    + +   ++ 
Sbjct: 256 FDDVKEVLRTQLIRERYQTLITDLRSKVN 284


>gi|301059205|ref|ZP_07200143.1| SurA N-terminal domain protein [delta proteobacterium NaphS2]
 gi|300446695|gb|EFK10522.1| SurA N-terminal domain protein [delta proteobacterium NaphS2]
          Length = 324

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/384 (14%), Positives = 117/384 (30%), Gaps = 81/384 (21%)

Query: 20  VLFVPFLIWGLSDALFSVSG----SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +  + FL  G +  L   +     +  V  V    V               ++Q  G   
Sbjct: 6   IFVLMFLFVGANAFLQGKANGEIYNRVVAIVNADVVTLYELNT-------RLTQMTGMAP 58

Query: 76  NS----ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           ++      ++ + + +K+L+ L+      + I+++ +      V   I        +++ 
Sbjct: 59  DALKRKSESQYLEMRRKVLEMLIEEKIAIEKIKEMKINVPQSEVDAAIET---LKRENDM 115

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
              D+ V+ L  +G++  EY       L R  ++                          
Sbjct: 116 TQEDL-VAGLKAQGLSLDEYRKRLKTELERRRLIN------------------------- 149

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
                     V +    ++  +  +++ +KDNY       ++ I                
Sbjct: 150 --------YEVRSKIIITDEEVQAYYDTHKDNYSTKGKVHLAMIFL-------------- 187

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
                  K ++     E R + +       +AD+    +K G+ F  LA +         
Sbjct: 188 -------KQEDPGNREEARALRR-------KADQIIGKIKAGENFGTLAAQFSNGPGAKD 233

Query: 312 LGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            G      I +++   +        G+    I    G  I  V         SF++VK  
Sbjct: 234 GGDLGVFNISELNSEMAASIKDLSSGEIGTPIVRPNGIQIIKVVEKDEGGEKSFEKVKNA 293

Query: 371 IANQMRITKASEKVKEDYKRLEEF 394
           I + +   K ++      K L E 
Sbjct: 294 IRSTLYREKMNQAYDAWIKDLREK 317


>gi|226224827|ref|YP_002758934.1| post-translocation molecular chaperone [Listeria monocytogenes
           Clip81459]
 gi|254825217|ref|ZP_05230218.1| rotamase [Listeria monocytogenes FSL J1-194]
 gi|254853343|ref|ZP_05242691.1| export protein [Listeria monocytogenes FSL R2-503]
 gi|254992110|ref|ZP_05274300.1| post-translocation molecular chaperone [Listeria monocytogenes FSL
           J2-064]
 gi|255520683|ref|ZP_05387920.1| post-translocation molecular chaperone [Listeria monocytogenes FSL
           J1-175]
 gi|300763971|ref|ZP_07073967.1| protein export protein [Listeria monocytogenes FSL N1-017]
 gi|225877289|emb|CAS06003.1| Putative post-translocation molecular chaperone [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606707|gb|EEW19315.1| export protein [Listeria monocytogenes FSL R2-503]
 gi|293594463|gb|EFG02224.1| rotamase [Listeria monocytogenes FSL J1-194]
 gi|300515312|gb|EFK42363.1| protein export protein [Listeria monocytogenes FSL N1-017]
          Length = 293

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 30/213 (14%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247
           +      S+  + + F +YK  Y                    ++ Y L      E   +
Sbjct: 62  LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 121

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  YE      + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     
Sbjct: 122 TSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175

Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G     + P   D +   + ++L  KGD +  +   +GY I  +   KP+   +F
Sbjct: 176 ATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233

Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLE 392
           ++ KK +       Q+      + +K++YK   
Sbjct: 234 EKDKKAVKASYLESQLTTENMQKTLKKEYKDAN 266


>gi|46908453|ref|YP_014842.1| protein export protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47094429|ref|ZP_00232114.1| protein export protein [Listeria monocytogenes str. 4b H7858]
 gi|254931668|ref|ZP_05265027.1| rotamase [Listeria monocytogenes HPB2262]
 gi|67461025|sp|Q71XE6|PRSA2_LISMF RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|46881724|gb|AAT05019.1| protein export protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47017195|gb|EAL08043.1| protein export protein [Listeria monocytogenes str. 4b H7858]
 gi|293583223|gb|EFF95255.1| rotamase [Listeria monocytogenes HPB2262]
 gi|328472118|gb|EGF42993.1| post-translocation molecular chaperone [Listeria monocytogenes 220]
 gi|332312671|gb|EGJ25766.1| Foldase protein prsA 1 [Listeria monocytogenes str. Scott A]
          Length = 293

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 30/213 (14%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247
           +      S+  + + F +YK  Y                    ++ Y L      E   +
Sbjct: 62  LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 121

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  YE      + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     
Sbjct: 122 TSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175

Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G     + P   D +   + ++L  KGD +  +   +GY I  +   KP+   +F
Sbjct: 176 ATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233

Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLE 392
           ++ KK +       Q+      + +K++YK   
Sbjct: 234 EKDKKAVKASYLESQLTTENMQKTLKKEYKDAN 266


>gi|229173017|ref|ZP_04300568.1| Foldase protein prsA 1 [Bacillus cereus MM3]
 gi|228610350|gb|EEK67621.1| Foldase protein prsA 1 [Bacillus cereus MM3]
          Length = 288

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246
           Y ++ ++ +      S+    +  E+ KD    N++   E   +        + + +I  
Sbjct: 60  YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 119

Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 230 E--LKPFDEVKDQIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEFK 279



 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 131 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 190

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 191 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDQ 240

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V +  K+
Sbjct: 241 IRKDLEQQRLQDTTGKWKQQVVNDLLKD 268



 Score = 40.4 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD+    L Q   +D        V+  L    
Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDQIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 269

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 270 DIKVNDK 276


>gi|77458207|ref|YP_347712.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens Pf0-1]
 gi|77382210|gb|ABA73723.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens Pf0-1]
          Length = 317

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 115/362 (31%), Gaps = 74/362 (20%)

Query: 33  ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92
           ++   +       V  + +        + + L    + +  + N +  +   L +  LD 
Sbjct: 15  SVGMANNEPVAARVNGEAISEFRLERFFAEYLEDQGRAVASIRNPKAYKQ--LRQAALDT 72

Query: 93  LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
           L+    L Q     G++ D   V  ++ R+              F+ RL   G +E  + 
Sbjct: 73  LIDKELLWQESRKRGVKIDEQTVREQVERT---RTAIGGTD--KFLQRLQDAGFDEASFT 127

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
           ++  + L+   +                                     +  +  P    
Sbjct: 128 EYTHRELAAQRMF----------------------------------AELTQVQAPDEQT 153

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
           +  +F +++    APE  +  +IL  V        +    L+                  
Sbjct: 154 VRAFFAEHRAEMAAPEQVQARHILIKVAGDADAATVEAARLRL----------------- 196

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSI 329
                      +E   ++  G+ F  +A+   + +       LG F++  +   +   + 
Sbjct: 197 -----------EELRAAIAGGQTFASVAQSGSEDVTASQGGDLGYFARGQMV-PAFETAA 244

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           F+L K G+ +  +   FG+ +  V N K +  V  ++  + +   +   + ++  ++   
Sbjct: 245 FAL-KPGEVSEAVRTPFGWHLIFVENHKEAADVPEEQGLETVRAYLARQQQTQARRQVLA 303

Query: 390 RL 391
           +L
Sbjct: 304 QL 305


>gi|323137132|ref|ZP_08072211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp.
           ATCC 49242]
 gi|322397490|gb|EFY00013.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp.
           ATCC 49242]
          Length = 297

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 68/176 (38%), Gaps = 10/176 (5%)

Query: 225 RAPEYKRISYILFDVHEKE------KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             PE+ +    L D    E       K   +   ++  Y++  +            ++  
Sbjct: 94  ETPEFAKKLAYLRDKALMETLLGNVAKQAATEAAIKQTYDEAAKNQKPETEYHAHHILVG 153

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           ++++A +A   +K G+ F ++  E  K     +  LG F+K+ +     AD+   L + G
Sbjct: 154 SEEDAKKALARVKGGEDFAKVVAEVSKDSGPKNGDLGWFTKDRMV-PEFADAAAKL-EPG 211

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             +  +   FG+ I  +   +P       +VK  +A  +     S+ V +  +  +
Sbjct: 212 QISDPVKTQFGWHIIKLDEKRPKAFPPLDQVKDQVARYVVQKAQSDLVVKLREAAK 267


>gi|189467728|ref|ZP_03016513.1| hypothetical protein BACINT_04120 [Bacteroides intestinalis DSM
           17393]
 gi|189435992|gb|EDV04977.1| hypothetical protein BACINT_04120 [Bacteroides intestinalis DSM
           17393]
          Length = 712

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 88/728 (12%), Positives = 204/728 (28%), Gaps = 138/728 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     S  V  V  + +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGEALSAQDYQNLVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   ++    G    ++   +  +  ++  N V+   ++   + +G+      +   I  
Sbjct: 61  EYTEVVKFSRGTSALTDE-ENNQIKDEVWRNYVNNKLIENEAKKLGISVSKAEIQAIIDA 119

Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHY----------TK 157
                 +   F       F  D+    L          +   +Y ++Y           K
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNTAQM-PAQYAEYYQSMYKFWSFLEK 178

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD----------------YIVLNNRH 201
            L +  +   +   +  S        +  F+ R                    I + +  
Sbjct: 179 QLIQNRLAEKYQALVSKSLFSNPVEAQVAFDARVDQSDLLLAAIPYSSIEDSTITITDAD 238

Query: 202 VPAIADPSNAVLTQWFEKYKDNYR------APEYK------------------------- 230
           + A  D       Q+ E     +       +PE +                         
Sbjct: 239 LKAAYDKKKEQFRQYVETRNIKFIDVQVTASPEDRNAIQEEVVEYTEQLAGTPGDYSTLV 298

Query: 231 -----RISYILFDVHEKEKKIEI-------------------SNDELQAEYEKNKEKYFS 266
                 + YI      K    ++                   +++ + +   K       
Sbjct: 299 RAAGSEVPYIDLYYTSKALPTDVVARLDSVSVGGVYGPYYNATDNTINSF--KKLATASM 356

Query: 267 PEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318
           P+     Q+          +  AD  + ++K G  F ++A++ G++   + IS  ++   
Sbjct: 357 PDSIQYRQIQVVAEDATKTKALADSIYTAIKGGADFAEIAKKYGQTGESTWISSANYEGA 416

Query: 319 YIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
            +   +L   ++I +L K  +   +       +I  V + K         VK      + 
Sbjct: 417 QLDGDNLKYVNTITTLGKN-EMANLSLAQAN-IILQVMDKKA--------VKDKYKVAVI 466

Query: 377 I---TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
                 + E   + Y    +F+A   +++++    +     L  +D          + +I
Sbjct: 467 KRPVEFSKETYSKAYNDFSQFIAANPTLEKMVANAEDAGYKL--LDRNDLYSSEHGIGSI 524

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
              ++ L   F                   + V +   IP   R L  V   ++ +    
Sbjct: 525 RGTKEALRWAFSAKPGEVSGLYECGESDRMLVVGVSAIIPEGYRPLALVKDQLRLELIRD 584

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRD----IGKNLGASLLTTNQINRMDNENKFFGYDGI 549
           K       KA +++ +    G    D    + + +  S+                    +
Sbjct: 585 K-------KAEKIMADMKAAGATSFDQYKSMAEAVSDSVKHVTFAAPAYVPALRASEPLV 637

Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
               S         PI+      V +    +        +      Q M+  +    +  
Sbjct: 638 GAYASIAELNKLSAPIKGNGGVFVLQPYAKEKLNETFNQETEEATLQNMHARMASQFLND 697

Query: 610 LKSQYSVT 617
           L  +  V 
Sbjct: 698 LYLKADVK 705


>gi|42781422|ref|NP_978669.1| peptidylprolyl isomerase [Bacillus cereus ATCC 10987]
 gi|42737344|gb|AAS41277.1| protein export protein prsA [Bacillus cereus ATCC 10987]
          Length = 283

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 87/234 (37%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246
           Y ++ ++ +      S+    +  E+ KD    N++   E   +        + + +I  
Sbjct: 55  YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 114

Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 115 EKAIKATVTEKDVKDNYK--------PELK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 166 KQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 224

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F EVK DI   +   +  +   +  +++   L     +    +  K  
Sbjct: 225 E--LKPFDEVKDDIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEFKKT 276



 Score = 44.2 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 52/148 (35%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +++++    K ++  K ++E +  G     ++++    +             
Sbjct: 126 DVKDNYKPELKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFA 185

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      D   +           Y  +++ +      +  +EV  D
Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDD 235

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V +  K+
Sbjct: 236 IRKDLEQQRLQDTTGKWKQQVVNDLLKD 263



 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKLDAGQ 204

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     L Q   +D        V+  L    
Sbjct: 205 VSDPVKTTYGYHIIKVTDKKELKPFDEVKDDIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 264

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 265 DIKVNDK 271


>gi|218897938|ref|YP_002446349.1| foldase protein PrsA [Bacillus cereus G9842]
 gi|218541254|gb|ACK93648.1| foldase protein PrsA [Bacillus cereus G9842]
          Length = 280

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 93/237 (39%), Gaps = 27/237 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217
           S  ++V    G +  S+      + +  +N S  V   VL++++     + +   L +  
Sbjct: 24  SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLDDKYKVTDEEVT-KQLKELK 82

Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +K  DN+         +  +  +    L    EK  K  ++  + +  Y+          
Sbjct: 83  DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDFKDHYK---------P 133

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSL 325
              V  ++  ++K A E  + L  G+ F  LA++  +       G    E+ P       
Sbjct: 134 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEF 193

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            D+ + L + G  +  +  SFGY I  +++ K     S++E K++I  ++   +  +
Sbjct: 194 EDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKSYEEEKENIRKELEQQRIQD 247


>gi|116620640|ref|YP_822796.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223802|gb|ABJ82511.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 342

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 127/375 (33%), Gaps = 86/375 (22%)

Query: 21  LFVPFLIWGLSDALF----SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
           +FV F   G++            ++    V    +  S    +++ +    S+      +
Sbjct: 4   IFVVFA-AGVAALTLASCKHSPPANVAAEVDNHAITNSDLEKTYQSQYAQQSE----GAS 58

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
            ++  +  LD  +L ++++   + +  E +GL A    V  EI++          ++ + 
Sbjct: 59  EDQILTQKLD--LLSSMITQEIMLRKAEKLGLAAVDADVDAEISKMRA------PYTKEE 110

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           F  +L+ + +   +        L+   +V                               
Sbjct: 111 FEKQLSAQHMTLDDLKLKVRSKLTVDKLVN------------------------------ 140

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
              + + +    ++A +  ++   K  +  PE                +I ++       
Sbjct: 141 ---KEITSKITITDADVKNFYNNNKAAFNLPE----------PAIHMAQILVTP------ 181

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEA----DEAFQSLKKGKKFIQLAEEQGKS----LS 308
                  +  P +R ++     N KEA    ++    LK+G  F  LA+   +      +
Sbjct: 182 -------FPDPNVRNLKNSKAQNDKEARAKIEDILGRLKRGDDFGMLAQNYSEDANSAPN 234

Query: 309 DISLGSFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
              +G   +  +   +  L   + SL   G  +P+I    GY I  V + +P+      +
Sbjct: 235 GGDMGFVRQSDLEKVNPELRKMVISLPPNG-VSPIIPTPEGYRILKVISKEPAGQRELND 293

Query: 367 --VKKDIANQMRITK 379
             V+++I + +  +K
Sbjct: 294 PRVQQNIRDTLLNSK 308


>gi|146337720|ref|YP_001202768.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
 gi|146190526|emb|CAL74525.1| putative Peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
          Length = 274

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 5/151 (3%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K   + D ++  YE+  ++    +      ++   + EA      L KG  F +LA+++ 
Sbjct: 101 KAATTPDAMKKVYEEASKQIGGEQEVHARHILVETEDEAKAVKAELAKGADFAELAKKKS 160

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           K         LG F+KE +     A+  FS+ + G  +  +   FG+ I  V   +    
Sbjct: 161 KDPGASDGGDLGFFTKEQMV-PEFANVAFSM-EPGKISDPVKTQFGWHIIKVEEKRNRKP 218

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             F++VK  I   +     ++ V +  +  +
Sbjct: 219 PEFEQVKSQIETYVTRKAQADYVGKLREAAK 249


>gi|77464749|ref|YP_354253.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides 2.4.1]
 gi|77389167|gb|ABA80352.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 286

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 5/149 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++++ LQA Y+                ++  ++ EA +  + +  G  F  LA+E    
Sbjct: 120 AVTDEALQAAYDARFADAAPQTEYNASHILVSSEDEAKKLKEEIDGGADFATLAKEHSSD 179

Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               +  SLG F    +      D++  + K G+    I   FG+ +  ++  + +   S
Sbjct: 180 GAAANGGSLGWFGLGMMVKP-FEDAVVKM-KPGEVVGPIQTQFGWHLVKLNETRIAEKPS 237

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
             +++ ++A Q+     +  + E   + E
Sbjct: 238 LDDMRDELAGQIEQEAVARHIDEVTAKAE 266


>gi|75764532|ref|ZP_00744003.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74487981|gb|EAO51726.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 268

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 90/233 (38%), Gaps = 27/233 (11%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           +V    G +  S+      + +  +N S  V   VL++++     + +   L +  +K  
Sbjct: 16  IVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLDDKYKVTDEEVT-KQLKELKDKMG 74

Query: 222 DNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
           DN+         +  +  +    L    EK  K  ++  + +  Y+             V
Sbjct: 75  DNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDFKDHYK---------PKLQV 125

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSI 329
             ++  ++K A E  + L  G+ F  LA++  +       G    E+ P        D+ 
Sbjct: 126 SHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAA 185

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           + L + G  +  +  SFGY I  +++ K      ++E K++I  ++   +  +
Sbjct: 186 YKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 235


>gi|83953128|ref|ZP_00961850.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. NAS-14.1]
 gi|83842096|gb|EAP81264.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. NAS-14.1]
          Length = 280

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 74/165 (44%), Gaps = 5/165 (3%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK    +++ +ELQA Y++        E  +   ++   ++EA    + L +G  F +LA
Sbjct: 107 EKAMAQDVTEEELQAAYDEAYADAEPTEEFSASHILVETEEEAQAVKKELDEGADFAELA 166

Query: 301 EEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +E+    S     +LG F    +   +   ++ +L + G  +  +   FG+ +  + + +
Sbjct: 167 KEKSTGPSGPAGGTLGWFGPGMMV-PAFETAVAAL-EVGAVSEPVETQFGWHVIKLDDKR 224

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
                  ++VK ++  Q+R  KA   +++  +  +   +   S+D
Sbjct: 225 QKEAPKLEDVKDELETQVRQVKAQTLIEKTTEAADVDRSAADSID 269


>gi|110635342|ref|YP_675550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium sp.
           BNC1]
 gi|110286326|gb|ABG64385.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chelativorans sp.
           BNC1]
          Length = 351

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 63/149 (42%), Gaps = 4/149 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            I+++EL A YE+   K    E      ++  +++EA      L +G  F ++A+E+ K 
Sbjct: 161 PITDEELNARYEEEVAKIPQQEEVHARHILVDSEEEAKNIITQLDEGGDFAEIAKEKSKD 220

Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               +   LG F++  +     + + F++         +   FG+ +  V + +     +
Sbjct: 221 GAAANGGDLGYFTEGAMV-PEFSKAAFAMEPGAHSEEPVKTQFGWHVIKVEDKRMQPPPA 279

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
            ++VK  I + +   K  E +    +  E
Sbjct: 280 LEQVKDQIRSMVIRDKYMETLVSLRENAE 308


>gi|296329574|ref|ZP_06872060.1| hypothetical protein BSU6633_00635 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672771|ref|YP_003864442.1| putative secretion protein [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296153317|gb|EFG94180.1| hypothetical protein BSU6633_00635 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411014|gb|ADM36132.1| putative secretion protein [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 297

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 7/160 (4%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           +I Y +       + I+ISN EL++ Y KNKE Y   +   +  +V  +++EA E  + L
Sbjct: 118 QIRYNILLEELLTRDIDISNKELKSFYNKNKELYQFDDSYRIRHIVVKDEEEAREVLKEL 177

Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG 344
           K G  F  +A E+            LG  ++  + IP   + ++  +L +       I  
Sbjct: 178 KGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEEAQ-TLKEDEWSDEPIKV 236

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
           S GY +  +     + T S+ EVK  I  Q+ + +  +K 
Sbjct: 237 SNGYAVIQLKEKLKARTFSYDEVKDQIRRQIAMDQLGDKA 276



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 9/120 (7%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL--LFR 442
           +E+ + + + L  G+S + ++          P     G   +  +     Y E+   L  
Sbjct: 167 EEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEEAQTLKE 226

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
               D+P+            Y  +Q+KE + AR    +EV   +++     +  ++ + K
Sbjct: 227 DEWSDEPIKVS-------NGYAVIQLKEKLKARTFSYDEVKDQIRRQIAMDQLGDKATVK 279


>gi|222149929|ref|YP_002550886.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4]
 gi|221736911|gb|ACM37874.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4]
          Length = 291

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 4/134 (2%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           +++E++A YEK        +      ++   + EA +  + L  GK F +LA+E+    S
Sbjct: 116 TDEEVKARYEKEIAALPKEQEIHARHILVKTEDEAKDVIKQLDAGKDFAELAKEKSTDSS 175

Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 LG FSK  +      ++ F+L         +   FG+ +  V  I+ +    F+
Sbjct: 176 GSDGGDLGFFSKGRMV-PEFEEAAFALKPGTYTKTPVKSQFGFHVIKVEEIRDAAPPKFE 234

Query: 366 EVKKDIANQMRITK 379
           +V++ +   +   K
Sbjct: 235 DVQQQVRQLVMRDK 248


>gi|258405810|ref|YP_003198552.1| SurA domain-containing protein [Desulfohalobium retbaense DSM 5692]
 gi|257798037|gb|ACV68974.1| SurA domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 311

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 42/357 (11%), Positives = 98/357 (27%), Gaps = 81/357 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +            +     +    +  +R     + K++L  +V    L
Sbjct: 27  DRIVAVVNGEIITLFELNQKADPVVERFRSQQPGSLTEDRIEE--IKKRVLQTMVDNMLL 84

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E + +E +   V   I            +  +     LA EG++   +  +  + L
Sbjct: 85  RQEAERLEMEIEDAEVQDRIEEM----KTQRGWDDERLDQMLANEGLDRSSFEKNIREDL 140

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  +VG                                   V      +N  +  +++ 
Sbjct: 141 MRRRLVGAM---------------------------------VRRKVVVTNEEIQTFYKD 167

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            ++ +   +   +                                          L  P+
Sbjct: 168 NQEQFAQEKKVDLRL----------------------------------------LAVPS 187

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGD 337
             +A +  Q +  G   F Q A++  +  +    G        D++     +      G 
Sbjct: 188 VDKAKQLRQRITDGDLDFAQAAKQFSQGPAAGQGGDLGWVKWADLAPQWKEVLRSTSPGS 247

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            T          I ++ +++         V+  IA+ +R  K  ++++   +RL + 
Sbjct: 248 MTEPFSLQGQTAILYLEDMQKGQVQPLSAVRDRIADTLRGPKFEKQLETYLQRLRDK 304


>gi|224418500|ref|ZP_03656506.1| cell binding factor 2 precursor major antigen PEB4A [Helicobacter
           canadensis MIT 98-5491]
 gi|253827813|ref|ZP_04870698.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142030|ref|ZP_07804223.1| cell binding factor [Helicobacter canadensis MIT 98-5491]
 gi|253511219|gb|EES89878.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131061|gb|EFR48678.1| cell binding factor [Helicobacter canadensis MIT 98-5491]
          Length = 271

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 77/155 (49%), Gaps = 9/155 (5%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG--------KKF 296
           K+++S+ E++  Y +NK K+  PE   V+ ++  ++ +A      LKK         ++F
Sbjct: 108 KVKVSSSEIEKFYNQNKTKFVQPETAKVKHILVSSEADAKNIIADLKKAGKNVASKFEEF 167

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +   + G + +   LG  +K  +     AD+ F L K       +   FGY + +V + 
Sbjct: 168 AKAKSKDGSAQNGGELGWIAKGQVV-PEFADAAFKLNKGQYTQTPVKTQFGYHVIYVDDK 226

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +P+ T++ ++V   I   +++TK  E V+++ + L
Sbjct: 227 RPTTTLALKDVSGQIEQNLKLTKFQENVRKEGQDL 261


>gi|18309250|ref|NP_561184.1| hypothetical protein CPE0268 [Clostridium perfringens str. 13]
 gi|110800910|ref|YP_694723.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens ATCC 13124]
 gi|168207845|ref|ZP_02633850.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|168211827|ref|ZP_02637452.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|168215167|ref|ZP_02640792.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens CPE str. F4969]
 gi|168218257|ref|ZP_02643882.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens NCTC 8239]
 gi|169344703|ref|ZP_02865666.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|18143926|dbj|BAB79974.1| hypothetical protein [Clostridium perfringens str. 13]
 gi|110675557|gb|ABG84544.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens ATCC 13124]
 gi|169297170|gb|EDS79284.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|170660843|gb|EDT13526.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170710226|gb|EDT22408.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713436|gb|EDT25618.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens CPE str. F4969]
 gi|182379724|gb|EDT77203.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens NCTC 8239]
          Length = 248

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 99/249 (39%), Gaps = 21/249 (8%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFEN----------RSVDYIVLNNRHVPAIADPS 209
               V+         S+ + +   R+  +           R V    +    +   A  +
Sbjct: 1   MEKKVLATVGNTEITSDYIDEIIARYPAQQQAMLASDEGKRQVLEQAIAFELMSEFAKET 60

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
               T+ F+   + +      +       + +    + +++DE +A YE++KE +   E 
Sbjct: 61  GLDKTEEFKDQLNKF-----AKELLAQMVMKKTLSSVTVTDDEAKAFYEEHKENFVELET 115

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
            T + ++  +++EA +  + +  G   F   A +     S     +LGSFSK  +     
Sbjct: 116 VTAKHILVASEEEAKKVEEEIASGSITFEDAANKYSSCPSKEQGGNLGSFSKGMMV-PEF 174

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            ++ F+L + G  +  +   FGY +  V +   + T +F++VK+ + N +   +  +K  
Sbjct: 175 EEAAFNL-ELGVVSAPVKTQFGYHLIKVEDKTEAKTKAFEDVKEQVVNMLIQERQQKKYL 233

Query: 386 EDYKRLEEF 394
           E  K L E 
Sbjct: 234 ELIKELREK 242


>gi|297566395|ref|YP_003685367.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
           DSM 9946]
 gi|296850844|gb|ADH63859.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
           DSM 9946]
          Length = 322

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 107/358 (29%), Gaps = 87/358 (24%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGA 97
               V  VG Q +  S F   W   +    Q+ G     E          + L  L    
Sbjct: 29  DDPVVAEVGGQALKKSYFDFEWSFFVKTSLQRQGMPATPESEAQFERFKPQFLGRLAKDY 88

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
            + +  E  GL A    V  ++A       + +  S + F   L++ GI     ID Y  
Sbjct: 89  AVIKASERAGLAASKEAVENQVAE-----ARKDFESDEAFNQALSQVGIAS---IDDYR- 139

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
                    M V      N  L+Q +                        PS + L   +
Sbjct: 140 ---------MLVYEALTYNAYLEQLQE--------------------QVKPSESALRLIY 170

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
              +  +  PE                                              ++ 
Sbjct: 171 GLSQAEFTTPETY----------------------------------------CASHILV 190

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLA 333
            +  EA    + L +G  F  LA++  +          LG   +         +++  L 
Sbjct: 191 VSGDEAISLIRQLGQGADFATLAKQYSQDPGSKDNGGDLGCEPRGTYV-APFENAMIRL- 248

Query: 334 KKGDFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           K G  +   +   FG+ I  ++ I+PS    F EVK  IA ++ + +A EK+ +   +
Sbjct: 249 KAGQTSREPVRTEFGFHIIRLNKIEPSTVRPFDEVKSSIAERV-VQRALEKLLDRIAQ 305



 Score = 40.4 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/125 (11%), Positives = 40/125 (32%), Gaps = 7/125 (5%)

Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
           ++   L   L  G     ++++              G + +G  VA        L     
Sbjct: 194 DEAISLIRQLGQGADFATLAKQYSQDPGSKDNGGDLGCEPRGTYVAPFENAMIRLKAGQT 253

Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
             +P+  +         +  +++ +  P+  R  +EV + + +        + +   A +
Sbjct: 254 SREPVRTEF-------GFHIIRLNKIEPSTVRPFDEVKSSIAERVVQRALEKLLDRIAQR 306

Query: 506 LVLEY 510
           + +  
Sbjct: 307 VGITL 311


>gi|237752063|ref|ZP_04582543.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376630|gb|EEO26721.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 271

 Score =  106 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 9/164 (5%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK--- 295
           + ++  K+++ + E+   Y +NK K+  PE      ++  ++ EA      LKK  K   
Sbjct: 102 MRKQMDKVKVLDSEITKFYNENKSKFVQPETIKASHILVTSESEAKAIIAELKKAGKNVA 161

Query: 296 --FIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F  LA E+ K     +   LG  +K  +     A++ F L K    T  +   FGY +
Sbjct: 162 GKFDSLAREKSKDGSAQNGGELGYIAKNQVV-PEFANAAFKLQKGAYTTTPVKSQFGYHV 220

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
             V + KP+ T++ +++K  I   +++ K  E++K++ + L + 
Sbjct: 221 ILVEDKKPAGTIALKDIKGQIEQNLKLKKFQEEIKKEGEELRKK 264


>gi|221640663|ref|YP_002526925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides KD131]
 gi|332559643|ref|ZP_08413965.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides WS8N]
 gi|221161444|gb|ACM02424.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides KD131]
 gi|332277355|gb|EGJ22670.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides WS8N]
          Length = 284

 Score =  106 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 5/149 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++++ LQA Y+                ++  ++ EA +  + +  G  F  LA+E    
Sbjct: 118 AVTDEALQAAYDARFADAAPQTEYNASHILVSSEDEAKKLKEEIDGGADFATLAKEHSSD 177

Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               +  SLG F    +      D++  + K G+    I   FG+ +  ++  + +   S
Sbjct: 178 GAAANGGSLGWFGLGMMVKP-FEDAVVKM-KPGEVVGPIQTQFGWHLVKLNETRIAEKPS 235

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
             +++ ++A Q+     +  + E   + E
Sbjct: 236 LDDMRDELAGQIEQEAVARHIDEVTAKAE 264


>gi|148258757|ref|YP_001243342.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1]
 gi|146410930|gb|ABQ39436.1| putative Peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1]
          Length = 274

 Score =  106 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 5/151 (3%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K   + D ++  YE+  ++    +      ++   + EA      L KG  F +LA+++ 
Sbjct: 101 KAATTPDAMKKVYEEASKQIGGEQEVHARHILVETEDEAKAVKAELAKGGDFAELAKKKS 160

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           K         LG F+KE +     A+  F+L + G  +  +   FG+ I  V   +    
Sbjct: 161 KDPGASDGGDLGFFTKEQMV-PEFANVAFAL-EPGKISDPVKTQFGWHIIKVEEKRNRKP 218

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             F +VK  I   +     ++ V +  +  +
Sbjct: 219 PEFDQVKSQIETYVTRKAQADYVSKLREAAK 249


>gi|237816303|ref|ZP_04595296.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus str. 2308 A]
 gi|237788370|gb|EEP62585.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus str. 2308 A]
          Length = 381

 Score =  106 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R   E R +  +      +  I   +        ++ K+     E+ R   +  +  
Sbjct: 137 QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 192

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +     +IS+ +++A Y+K               ++   ++EA+   + L+ G KF  LA
Sbjct: 193 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 252

Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +     G + S   LG FS+  +       + F+L         +   FGY +  + + +
Sbjct: 253 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 311

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408
                ++ +VK  I + +   +  E VK+             +E+ +    +  E S ++
Sbjct: 312 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 371

Query: 409 KIVSIDLPL 417
                D P 
Sbjct: 372 DASEDDAPQ 380



 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +     D+++  +   V+   + +    +  ++A   +++  + G  F D+ K       
Sbjct: 204 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 260

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
            ++  +           +     F+         P++    Y V ++ + +       D+
Sbjct: 261 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 320

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               +  ++ ++     +  L+    +   D  I++ +
Sbjct: 321 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 358


>gi|331092188|ref|ZP_08341018.1| hypothetical protein HMPREF9477_01661 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401960|gb|EGG81534.1| hypothetical protein HMPREF9477_01661 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 246

 Score =  106 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 6/162 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295
             + E  K +E+S++E++A Y+ N +++      + + ++  ++++     +S+  G+K 
Sbjct: 83  LAMRETMKGVEVSDEEVKAYYDANSQQFKKGATVSAKHILTDSEEKCQTILESILNGEKT 142

Query: 296 FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F   A+E     S      LG F +  +      D  F  A+ G+    +   FGY +  
Sbjct: 143 FEDSAKEFSTCPSGTRGGDLGQFGRGQMVK-EFEDVAFE-AEIGEVKGPVKTQFGYHLIK 200

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           V N       +F EVK+ I   +   K + K  E    L+E 
Sbjct: 201 VENRTEESVAAFDEVKETIRRSLVQQKQNAKYMEQVNVLKEK 242


>gi|229109756|ref|ZP_04239342.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15]
 gi|229144911|ref|ZP_04273308.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24]
 gi|229150538|ref|ZP_04278754.1| Foldase protein prsA 1 [Bacillus cereus m1550]
 gi|228633031|gb|EEK89644.1| Foldase protein prsA 1 [Bacillus cereus m1550]
 gi|228638633|gb|EEK95066.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24]
 gi|228673797|gb|EEL29055.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15]
          Length = 293

 Score =  106 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 65  YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  +++ +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 125 EKAIKATVTDKDVKNNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 176 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 234

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F EVK  I   +   +  +   +  +++   L     +   ++  K  
Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286



 Score = 43.1 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 54  ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKNN 140

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 200

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      D   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 201 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V +  K+
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273



 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + + E    G++F  + K       +  Q   +             +         
Sbjct: 155 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KDK    + Q   +D        V+  L    
Sbjct: 215 VSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274

Query: 615 SVTVHDN 621
            + V++ 
Sbjct: 275 DIKVNNK 281


>gi|212702600|ref|ZP_03310728.1| hypothetical protein DESPIG_00626 [Desulfovibrio piger ATCC 29098]
 gi|212674041|gb|EEB34524.1| hypothetical protein DESPIG_00626 [Desulfovibrio piger ATCC 29098]
          Length = 320

 Score =  106 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 110/361 (30%), Gaps = 86/361 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD-KKILDNLVSGAT 98
           +     V  Q +       +   ELG          + ++A  V +  +K+LD+++    
Sbjct: 33  NKIAAVVNGQVITMFDLQKAALPELGRAR---LNPNDPKQADKVNVVFRKVLDSMIMDIL 89

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L+Q  + + + A    +  E+ +      K  + +   F + L ++G++  E        
Sbjct: 90  LEQEAKRLSITASDSEIDQELTKMM----KMRRMNRAQFEAELKKQGMSVDELRKTMKTN 145

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           + R  V+G  VG                   R V                ++  +  ++E
Sbjct: 146 MLRQRVMGAEVG------------------RRVV---------------VTDDEIRAYYE 172

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           K+KD                                  Y++N              +V+ 
Sbjct: 173 KHKD--------------------------------TMYDRNGLHMGL--------IVYN 192

Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKG 336
               A      +  G   F + A +   + +    G     E+       +S     K G
Sbjct: 193 PNVNARSIAAQIASGSLSFEEAARKYSIAPNREKGGDMGPVEWGRLNPEWESRLEKMKPG 252

Query: 337 DFTPVIHGSFG---YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           D T +           +       P   ++F+E +  I N +R  KA E+  E  ++L  
Sbjct: 253 DVTDIFTVQGHKAQVHLFRPGQSGPGRPMTFEEARPVIDNILRQPKAMERFDEYSQQLRN 312

Query: 394 F 394
            
Sbjct: 313 K 313


>gi|306820710|ref|ZP_07454338.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551320|gb|EFM39283.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 382

 Score =  106 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 104/266 (39%), Gaps = 35/266 (13%)

Query: 195 IVLNNRHVPAIAD------PSNAVLTQWFEKYK--DNYRAPEYKRISYILFDVHEKEKKI 246
           + +++  V A          S   + ++F   K   N+      +         +   K 
Sbjct: 108 LTVDDSSVDANVKQYTQILESAPDIKKYFADNKLDTNFIKAMSTKDLVKAALEKDFTDKN 167

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------------QKEADEAFQSL 290
           +++  E+ A YEKNK ++ S E      ++                   +K+ DE ++  
Sbjct: 168 QVTQAEIDAYYEKNKAEF-SNEQIRASHILIKTVNYDLSDMPKDKVEAAKKQIDEIYEKA 226

Query: 291 KKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             G+ F +LA++ G+     +   LG F+++ +     +D+ F+L   G+ +  +   +G
Sbjct: 227 IAGEDFAELAKQYGQDGTKDTGGDLGYFTRDRMVK-EFSDAAFAL-NIGEISKPVKTQWG 284

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL----EEFLALGTSMDE 403
           Y I  + + K S  V   + K+ + + ++  K ++ +KE  ++     +E L  G   D 
Sbjct: 285 YHIIKLVD-KKSENVDVAQAKEYVKSLLQKNKFNDYIKELKEKAKITKDEELLKGAEKDI 343

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKE 429
           +    K    +    +   K     +
Sbjct: 344 VPHDTKAKEQNKKPENATDKTTNDGD 369



 Score = 38.0 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 2/126 (1%)

Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
           E + K    + E +  G++F ++ K  G         +           +     F+  +
Sbjct: 213 EAAKKQIDEIYEKAIAGEDFAELAKQYGQDGTKDTGGDLGYFTRDRMVKEFSDAAFALNI 272

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
             +   P++    Y + K+ + K   V    +   Y+  ++ K+  +  I  LK +  +T
Sbjct: 273 GEI-SKPVKTQWGYHIIKLVDKKSENVD-VAQAKEYVKSLLQKNKFNDYIKELKEKAKIT 330

Query: 618 VHDNLI 623
             + L+
Sbjct: 331 KDEELL 336


>gi|218897287|ref|YP_002445698.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus G9842]
 gi|228900906|ref|ZP_04065121.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222]
 gi|218542209|gb|ACK94603.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus G9842]
 gi|228858832|gb|EEN03277.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222]
          Length = 293

 Score =  106 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 65  YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 125 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 176 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 234

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F EVK  I   +   +  +   +  +++   L    ++   ++  K  
Sbjct: 235 E--LKPFDEVKDKIRKDLEQQRLEDTTGKWKQQVVNDLLKDANIKVNNKEFKDT 286



 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 54  ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 140

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 200

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      D   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 201 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDL 250

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V +  K+
Sbjct: 251 EQQRLEDTTGKWKQQVVNDLLKD 273


>gi|291614457|ref|YP_003524614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans
           lithotrophicus ES-1]
 gi|291584569|gb|ADE12227.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans
           lithotrophicus ES-1]
          Length = 261

 Score =  106 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 99/232 (42%), Gaps = 9/232 (3%)

Query: 168 FVGGMRPSNLLLD---QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
            V G+      +D   +      +  S ++  +    +  +   S A +    +K  D  
Sbjct: 30  IVNGVSIPQARVDIRIKVAAQQGQPDSPEFRKVIRDDLINLEVISQAAVKNGLDKQPDVA 89

Query: 225 RAPEYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           +  E  R S +    V +  K   I +D LQ EYE  K +  + E + +  ++   + EA
Sbjct: 90  QQLELARQSVLAGAFVQDYAKSHPIGDDVLQKEYEALKARVGNKEYK-LSHILVGTEDEA 148

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTP 340
            +    LKKG KF ++A+ Q K     + G      +P       A+++  L KKG+ + 
Sbjct: 149 KKIAGQLKKGAKFAKIAKAQSKDPGSKNNGGDLGWAVPSNFVQPFAEAVAKL-KKGEVSA 207

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +   +G+ I  + + +     +F+E+K ++  +++     +++++   + +
Sbjct: 208 PVQTQYGWHIIKLEDTRELKVPTFEEMKPNLEKRLQQQAIQKEIEDMRSKAK 259


>gi|332291258|ref|YP_004429867.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332169344|gb|AEE18599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 713

 Score =  106 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 90/603 (14%), Positives = 205/603 (33%), Gaps = 77/603 (12%)

Query: 30  LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
           L    F+    + V S+    +   +F +  +++       +G   ++ RA +      +
Sbjct: 31  LDSGGFNADKQNRVASINGVNIDREAFASKVEEQTRR----LGANASTTRAVN-----TV 81

Query: 90  LDNLVSGATLDQFIEDIGLEADHGR----VWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
            +  ++   L++  E++G+E    R    +   +     F   D  FS       +A   
Sbjct: 82  WEQEINRVVLEEQYEELGIEVGRDRTQELLKQALQNDTRFQDGDGFFSEGKMQEFIATLK 141

Query: 146 INEK--------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
            ++          + ++      ++    +   G+  +    + A R    N  + ++ +
Sbjct: 142 ESQNPNDYQNWLNFEENLRNQEKQSIYYNLIKAGVGSTLKDGEIAYRLDNNNVDIQFVQV 201

Query: 198 NNRHVPAIADP-SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
               VP    P S   + ++  ++K+ Y+  E + I ++ F      +       EL   
Sbjct: 202 PYTSVPDEEAPVSKEEIQKYVNEHKEEYKTDETRSIRFVKFSEEASLEDENALKAELSKL 261

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG--S 314
             +   +                   A    ++L  G       E+     SDI      
Sbjct: 262 RNEYTSRNG-----------------ATGVTETLA-GFDKTDRVEDFLLDNSDIPYVNRW 303

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK--PSFTVS---FQEVKK 369
           F K+ +P  + AD++F+L K G        +    ++ V +++  P    S     + K 
Sbjct: 304 FFKKNLP-ATNADTLFALGKGG-VYGPYKDNNYMNLSRVMDVRKMPDSVKSRHILIDFKG 361

Query: 370 DIANQMR------ITKASEKVKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAG 422
            + N  R       T+  E+ K     L   +       +E+++             F+ 
Sbjct: 362 AVTNTQRGPVPSSATRTKEEAKNLADSLLSVIKRNSGKFEELAKE------------FSS 409

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR-DRKLEE 481
                +    + Y+   LF    +D  +           +     + E    +  + + +
Sbjct: 410 DKSNSENGGDLDYQNPNLFAEGYRDFIVDNKTGSVGIAETNFGYHVIEITDQKNLQDVIK 469

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN-- 539
           V T VK+   + KT   + +   +   E + +  +F+++    G ++    +I  MD   
Sbjct: 470 VATVVKEIVPSDKTISSIYNTTQKF--ELAAQDGDFQEVATENGYTVRPVQRIRAMDENL 527

Query: 540 ENKFFGYDGISQVF--SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
             +      +   F     V  +K FP+ NG  Y+V +VT       +  +   + +T +
Sbjct: 528 PGEGAQRSIVQWAFEEEVSVGDIKRFPVNNG--YIVAQVTRRTPKGTERVEDVSTQVTPI 585

Query: 598 MNK 600
           +  
Sbjct: 586 LRN 588



 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 11/129 (8%)

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIFS 331
           +  N K+A      L  G    ++A+ Q +++   S  S +   I     +  +  + F 
Sbjct: 585 ILRNMKKAAIIKDKL-SGATLAEMAQSQSQTVKTASAISMNAPTIAGAGNEPKVVGAAFG 643

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFT----VSFQEVKKDIANQMRITKASEKVKED 387
           L K+G+ +  I GS G  +  V+ I  +       SF   +   A     +K    +KE 
Sbjct: 644 L-KEGEISDPIEGSRGVYVVQVTKITEAPALENYASFATQEAQKARVAVSSKVLNALKEA 702

Query: 388 YKRLEEFLA 396
            + +E+  A
Sbjct: 703 AE-IEDNRA 710


>gi|253575648|ref|ZP_04852984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844986|gb|EES72998.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 398

 Score =  106 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 104/266 (39%), Gaps = 23/266 (8%)

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVLTQWFEKYK 221
           V    G     + L ++      E    + I   ++N          ++A +    E YK
Sbjct: 134 VATVNGVEITKDRLYEELAANGGEQALTNLINQELVNQEAAKNNITITDADVDAEIETYK 193

Query: 222 DNYRAPEY----------------KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
             + + E                 K++   L      E +I +++++++  +E  K+ + 
Sbjct: 194 TQFGSEEALNQALEQYGMTMDDLLKQVEMELKLTKLLEPQINVTDEQVKETFETYKDSFN 253

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPD 322
           +PE      ++   ++EA +  + LK+G  F +LA+ +    +    G    F      +
Sbjct: 254 TPEQVRTSVILVATEEEAKDIVKQLKEGADFAELAKSKSLDTATKDQGGDTDFFARGEME 313

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            ++ ++ F LAK G+ +  +  S GY +  V++ K + T + +E K +I   +   + S 
Sbjct: 314 EAVEEAAFKLAK-GEISEPVKTSEGYQVIKVTDKKEAHTATLEEKKDEIRKSLISQQVSS 372

Query: 383 KVKEDYKRLEEFLALGTSMDEISRRE 408
                 + +     +  +  + +  E
Sbjct: 373 MSGAWLEDVRSKAKITNTFTDAAAAE 398


>gi|225628141|ref|ZP_03786176.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti str. Cudo]
 gi|225616966|gb|EEH14013.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti str. Cudo]
          Length = 381

 Score =  106 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R   E R +  +      +  I   +        ++ K+     E+ R   +  +  
Sbjct: 137 QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 192

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +     +IS+ +++A Y+K               ++   ++EA+   + L+ G KF  LA
Sbjct: 193 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 252

Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +     G + S   LG FS+  +       + F+L         +   FGY +  + + +
Sbjct: 253 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 311

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408
                ++ +VK  I + +   +  E VK+             +E+ +    +  E S ++
Sbjct: 312 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 371

Query: 409 KIVSIDLPL 417
                D P 
Sbjct: 372 DASEDDAPQ 380



 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +     D+++  +   V+   + +    +  ++A   +++  + G  F D+ K       
Sbjct: 204 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 260

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
            ++  +           +     F+         P++    Y V ++ + +       D+
Sbjct: 261 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 320

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               +  ++ ++     +  L+    +   D  I++ +
Sbjct: 321 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 358


>gi|39995469|ref|NP_951420.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39982232|gb|AAR33693.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
 gi|307634691|gb|ADI83192.2| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           sulfurreducens KN400]
          Length = 297

 Score =  106 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 79/183 (43%), Gaps = 21/183 (11%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQSLKKG 293
           +++S+ EL+A Y+++ + +  PE   V  +                + + +   + LKKG
Sbjct: 117 VKVSDAELRAYYQEHAKDFVMPEQAIVRHIFIGFTDAADSQAKAAAKTKTEGVLERLKKG 176

Query: 294 KKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F  +A E  + +        LG+ +           ++F+L K G+ + ++   FGY 
Sbjct: 177 EDFAAVAAEASEDIESAKEGGLLGAITPGQTNSEEFEKAVFAL-KAGEMSGLVESPFGYH 235

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           I  V   K    + F EVK  + ++++     +K++E      + +A  T ++  +  EK
Sbjct: 236 IVKVDERKEKRALPFDEVKDALRSKLQGEAEQKKLREFV----DEVAKQTGLELPASEEK 291

Query: 410 IVS 412
              
Sbjct: 292 PSG 294



 Score = 37.7 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 34/123 (27%), Gaps = 7/123 (5%)

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
             + + E L  G     ++                G    G+        E+    VF  
Sbjct: 165 KTEGVLERLKKGEDFAAVAAEASEDIESAKEGGLLGAITPGQT-----NSEEFEKAVFAL 219

Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                     +     Y  V++ E    R    +EV   ++   +     +++    +++
Sbjct: 220 KAGEMSGLVES--PFGYHIVKVDERKEKRALPFDEVKDALRSKLQGEAEQKKLREFVDEV 277

Query: 507 VLE 509
             +
Sbjct: 278 AKQ 280


>gi|83942078|ref|ZP_00954540.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. EE-36]
 gi|83847898|gb|EAP85773.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. EE-36]
          Length = 292

 Score =  106 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 73/165 (44%), Gaps = 5/165 (3%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK    +++ +ELQA Y++        E  +   ++   ++EA    + L +G  F +LA
Sbjct: 119 EKAMAQDVTEEELQAAYDEAYADAEPTEEFSASHILVETEEEAQAVKKELDEGADFAELA 178

Query: 301 EEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +E+    S     +LG F    +   +   ++  L + G  +  +   FG+ +  + + +
Sbjct: 179 KEKSTGPSGPAGGTLGWFGPGMMV-PAFETAVAEL-EVGAVSEPVETQFGWHVIKLDDKR 236

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
                  ++VK ++  Q+R  KA   +++  +  +   +   ++D
Sbjct: 237 QKEAPKLEDVKDELETQVRQVKAQTLIEKTTEAADVDRSAADTID 281


>gi|259417083|ref|ZP_05741002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Silicibacter sp.
           TrichCH4B]
 gi|259345989|gb|EEW57803.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Silicibacter sp.
           TrichCH4B]
          Length = 283

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 65/176 (36%), Gaps = 12/176 (6%)

Query: 226 APEYKRISYILFDVHEKEKKIEIS-------NDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            PEY R+S    +       +  S        D ++  Y+         +      ++  
Sbjct: 87  TPEYVRLSVEHEERSLLASDVIESVMEDAQTEDAIRDAYDARYSSDDGGDEFNASHILLE 146

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKK 335
           ++++A    + L  G  F  LA+E     S      LG F    +       ++  + + 
Sbjct: 147 SEEDAVSIKEQLDAGADFAALAKESSTGPSGPNGGELGWFENGRMV-PEFEAAVAEM-RP 204

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G+ +  +   FG+ I  +++ +      +++V+++I  ++      +++ +     
Sbjct: 205 GEVSEPVQTQFGWHIIKLNDRRKLEAPDYEDVREEIGLELAQQAVEDRINQLTASA 260


>gi|88801328|ref|ZP_01116856.1| peptidylprolyl cis-trans isomerase [Polaribacter irgensii 23-P]
 gi|88781986|gb|EAR13163.1| peptidylprolyl cis-trans isomerase [Polaribacter irgensii 23-P]
          Length = 707

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 101/630 (16%), Positives = 207/630 (32%), Gaps = 66/630 (10%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           L  IR+  R+    I + +    F++        FS S  + V  V  + +    F  + 
Sbjct: 4   LSKIRE--RSMFLIIIIGLALFAFVLDPSTLGDFFSSSKVNEVGQVNGEAISRQEFAEAV 61

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI- 119
            Q             +      +     + DN++        +ED G+      VW EI 
Sbjct: 62  DQYKQN---------SRSEVSEMQAANAVWDNILRKKIYKNQLEDAGISVGEQDVWSEIL 112

Query: 120 -----ARSPLFHGKDNKFSHDVFVSRLAREGINEKE-------YIDHYTKMLSRTDVVGM 167
                  +P F  +   F    F   LA    N +        Y+    +         +
Sbjct: 113 KVPSVQDNPQFQNEAGLFDELKFKQFLADTKENNQSLWSAWSNYMGQIKENTETNTYNSL 172

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRA 226
              G+  S    +          S D++ ++   +   +     + +  + +  ++ ++A
Sbjct: 173 VTAGLGASLKEGEMEYVIENTKLSGDFVYVSYASIADSLVSIKRSEVAAYIKANENEFKA 232

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
              + ISY+ FD+    +      + ++                 V  L+       +E 
Sbjct: 233 VSTRDISYVKFDIKATAE----DEEAIKQ---------------KVGSLIGDASDRNNEV 273

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
               K          + G  L+      +        ++A+ IFS   +GD         
Sbjct: 274 IVGFKNATDDKVFLVDNGSDLNLDE--DYKFNASISQAVANDIFS-GNEGDVFGPYKDQ- 329

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKD--IANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
           GY    +S I+    +    V+    +   +   + + +V     + EE      S+  +
Sbjct: 330 GY--FKISKIRAVTKMP-DSVRASHILIPFLGSQRGTAEVSRTKAQAEEL---ADSILRV 383

Query: 405 SRR--EKIVSIDLPLVDFAGKDVKGKEVAAIPYKE-QLLFRVFGKDDPLSKDHTVALPDG 461
            +R   K  S+   L    G   KG ++    Y      FR +   +       V  P G
Sbjct: 384 VKRSDSKFASLAKSLSSDTGSAAKGGDLDWFNYARMTPAFRDYAFTNSKGAVGVVETPFG 443

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
            Y  ++I ++     +K+ ++ T   K   +  T  +   KA Q  L  SK   ++  + 
Sbjct: 444 -YHVIRIDDTK--NTQKVLKLSTYASKIIPSEATENDFFQKAEQFALAVSKT-TDYTALA 499

Query: 522 KNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
           K    +L     +  +D      G +   +S  F G  ++      +   SYVV  VT+ 
Sbjct: 500 KENNYNLRAAVGLEVLDENVPGLGNERQIVSWAFKGDSKIGSFNRFDLTGSYVVAVVTSK 559

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
               +   +K ++ +  ++  +   ++I+ 
Sbjct: 560 TEKGLMSVEKALNTVRPILLNEKKAALISA 589


>gi|228952655|ref|ZP_04114731.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229079483|ref|ZP_04212023.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2]
 gi|229178680|ref|ZP_04306044.1| Foldase protein prsA 1 [Bacillus cereus 172560W]
 gi|228604838|gb|EEK62295.1| Foldase protein prsA 1 [Bacillus cereus 172560W]
 gi|228703853|gb|EEL56299.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2]
 gi|228807121|gb|EEM53664.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 293

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 65  YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  +++ +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 125 EKAIKATVTDKDVKDNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 176 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 234

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F EVK  I   +   +  +   +  +++   L     +   ++  K  
Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286



 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 88/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 54  ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKDN 140

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 200

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      +   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 201 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V +  K+
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273



 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + + E    G++F  + K       +  Q   +             +         
Sbjct: 155 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KDK    + Q   +D        V+  L    
Sbjct: 215 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274

Query: 615 SVTVHDN 621
            + V++ 
Sbjct: 275 DIKVNNK 281


>gi|254485739|ref|ZP_05098944.1| ppic-type ppiase domain protein [Roseobacter sp. GAI101]
 gi|214042608|gb|EEB83246.1| ppic-type ppiase domain protein [Roseobacter sp. GAI101]
          Length = 282

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 71/178 (39%), Gaps = 7/178 (3%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E +++              +IS ++L A YE+        E      ++   +++A    
Sbjct: 98  ERRQLIAGEVIEKAMA--ADISAEDLAAAYEEEYGSAEPTEEFNASHILVETEEDALAVK 155

Query: 288 QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             +  G  F + A+E+       S  SLG F    +   +   ++  L + G  +  +  
Sbjct: 156 AEIDGGADFAETAKEKSTGPSGPSGGSLGWFGPGMMV-PAFETAVQDL-EVGAVSMPVET 213

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            FG+ I  + + +     + + VK+++  Q+R  KA EK+ E     +   +   ++D
Sbjct: 214 QFGWHIIKLEDKRLKDAPALESVKEELELQLRQVKAQEKITEMTDAADVDRSAADAID 271


>gi|160947418|ref|ZP_02094585.1| hypothetical protein PEPMIC_01352 [Parvimonas micra ATCC 33270]
 gi|158446552|gb|EDP23547.1| hypothetical protein PEPMIC_01352 [Parvimonas micra ATCC 33270]
          Length = 247

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 74/167 (44%), Gaps = 5/167 (2%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R       ++E    I++S++E++  YE+NK  + S      + ++  ++++ADE  
Sbjct: 73  EITRSILAKHFLNELFGDIKVSDEEIKKYYEENKNLFKSRYTFKAKHILVESEEKADELK 132

Query: 288 QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           +  + G++F +LA++     S      LG FS+  +  +   ++    A+ G+ T  +  
Sbjct: 133 KLCENGEEFEELAKKYSMCPSKEVGGDLGEFSQGQMV-LEFENACID-ARVGEITKPVKT 190

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            FGY +  + +      +  + VK +I   +   K      +    L
Sbjct: 191 QFGYHLIMLESKTEPEQLDLETVKDEIRKNIVKAKEQIAYVKKMDAL 237


>gi|253996058|ref|YP_003048122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera
           mobilis JLW8]
 gi|253982737|gb|ACT47595.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera
           mobilis JLW8]
          Length = 262

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 68/160 (42%), Gaps = 6/160 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
             + +  KK  +S+ + +A YEK K  Y   E  +   ++   + EA +    L KG  F
Sbjct: 100 MFLQDYVKKHPVSDADTKAAYEKYKTAYGDKEY-SARHILVKTEAEAKDIIAQLGKGGDF 158

Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            ++A+E+            LG FS   +     +D + +L K       +   FG+ +  
Sbjct: 159 AKIAKEKSLDPGSKEKGGDLGWFSPATMVKP-FSDVVANLQKGATSASPVQTQFGWHVIK 217

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + + +P+  + ++++K  I   ++     + + +   + +
Sbjct: 218 LVDTRPAQPLPYEKLKDGIQKNLQQHNLEKLMSDLRAKAK 257



 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 47/124 (37%), Gaps = 10/124 (8%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS----- 554
            ++A  ++ +  K G +F  I K       +         +  +F    + + FS     
Sbjct: 142 EAEAKDIIAQLGKGG-DFAKIAKEKSLDPGSKE----KGGDLGWFSPATMVKPFSDVVAN 196

Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
                    P++    + V K+ +++       +K    + + + +  L+ +++ L+++ 
Sbjct: 197 LQKGATSASPVQTQFGWHVIKLVDTRPAQPLPYEKLKDGIQKNLQQHNLEKLMSDLRAKA 256

Query: 615 SVTV 618
            + +
Sbjct: 257 KIDI 260


>gi|228958588|ref|ZP_04120307.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228801099|gb|EEM47997.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 293

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 65  YQMMLSKTLLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  +++ +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 125 EKAIKATVTDKDVKNNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 176 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 234

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F EVK  I   +   +  +   +  +++   L     +   ++  K  
Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286



 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 54  ELRQQYGESTLYQMMLSKTLLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKNN 140

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 200

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      D   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 201 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V +  K+
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273



 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + + E    G++F  + K       +  Q   +             +         
Sbjct: 155 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KDK    + Q   +D        V+  L    
Sbjct: 215 VSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274

Query: 615 SVTVHDN 621
            + V++ 
Sbjct: 275 DIKVNNK 281


>gi|218233359|ref|YP_002367018.1| peptidylprolyl isomerase [Bacillus cereus B4264]
 gi|296502878|ref|YP_003664578.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
 gi|218161316|gb|ACK61308.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus B4264]
 gi|296323930|gb|ADH06858.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
          Length = 283

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 55  YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 114

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  +++ +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 115 EKAIKATVTDKDVKNNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 165

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 166 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 224

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F EVK  I   +   +  +   +  +++   L     +   ++  K  
Sbjct: 225 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 276



 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 44  ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 102

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 103 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKNN 130

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 131 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 190

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      D   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 191 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 240

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V +  K+
Sbjct: 241 EQQRLQDTTGKWKQQVVNDLLKD 263



 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + + E    G++F  + K       +  Q   +             +         
Sbjct: 145 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 204

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KDK    + Q   +D        V+  L    
Sbjct: 205 VSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 264

Query: 615 SVTVHDN 621
            + V++ 
Sbjct: 265 DIKVNNK 271


>gi|90422049|ref|YP_530419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
 gi|90104063|gb|ABD86100.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
          Length = 310

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 5/155 (3%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
             E K   ++  ++  Y+   ++           ++   + EA      LKKG  F +LA
Sbjct: 120 AVEGKAATTDAAMKKVYDDAAKQITGETEVRARHILVETEDEAKAIEDELKKGADFAELA 179

Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +++ K         LG F+K+ +     +   F+L + G  +  +   FG+ I  V   +
Sbjct: 180 KKKSKDPGASDGGDLGFFTKDQMV-PEFSSVAFAL-EPGKISDPVKSQFGWHIIKVEEKR 237

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                 F +VK  I   +     ++ V +  +  +
Sbjct: 238 NRKAPDFAQVKAQIETYVTRKAQADYVTKLRETAK 272


>gi|229121887|ref|ZP_04251106.1| Foldase protein prsA 1 [Bacillus cereus 95/8201]
 gi|228661536|gb|EEL17157.1| Foldase protein prsA 1 [Bacillus cereus 95/8201]
          Length = 288

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYK----DNYR-APEYKRISYILFDVHEKEKKI-- 246
           Y ++ ++ +      S+    +  E+ K    DN++   E   +        + + +I  
Sbjct: 60  YQMVLSKALLDKYKVSDEEAKKQVEEAKVKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 119

Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 279



 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 131 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 190

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 191 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 240

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V E  K+
Sbjct: 241 IRKDIEQQRLQDTTGKWKQQVVNELLKD 268



 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 269

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 270 DIKVNDK 276


>gi|281357340|ref|ZP_06243829.1| hypothetical protein Vvad_PD2435 [Victivallis vadensis ATCC
           BAA-548]
 gi|281316371|gb|EFB00396.1| hypothetical protein Vvad_PD2435 [Victivallis vadensis ATCC
           BAA-548]
          Length = 540

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 87/536 (16%), Positives = 179/536 (33%), Gaps = 57/536 (10%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIW---GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
             K SR W+   F +V+ V FL +   G     FS   S        + V +        
Sbjct: 10  FHKHSR-WLFGGFTIVIIVSFLGFLTPGQFGCDFSDPESHEFGVAFGKPVTYRDL----- 63

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           +E+G   Q I  V++    R + +      NL     L Q  E +G+ A    V   + +
Sbjct: 64  REMGRNVQIINHVMSGVSNREIDV-----QNLFGPYCLLQAAERMGIVASDKEVAEMLRQ 118

Query: 122 SPLFHGKDNKFSHDVFVSRLA---REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
            P    KD KFS +++   LA   + GI+ +E+ +    M+    +      G+  +   
Sbjct: 119 MPTLQ-KDGKFSMELYNEMLAGYQKAGISAEEFNNAIRMMVMLNKLDREIAAGVVVTPGE 177

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           ++   R  +    +   + N              + ++FEK +  Y          + F 
Sbjct: 178 VESFYRRLYGKYRIKGALFNADTFKDKVPRDARKMQEFFEKNRSEYVIQAKLSALVVAFP 237

Query: 239 VHEK--EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-------------- 282
                 E     +  EL+  Y+ N   +   + +T E      + +              
Sbjct: 238 YAGFKAEAAKAATAAELEKFYKANTALFDDKDGKTQEYAKVAGEVKKKFIEARSRDLATR 297

Query: 283 -----ADEAFQSLKKGKK----FIQLAEEQGKSLSDISLGSFSKEYIPDVS----LADSI 329
                A  A++++ + +     F +LA +    + +          +  ++    +    
Sbjct: 298 RAYDFASAAYEAVGEAENKVEVFRELARKGKLDIIETGRFDIDATVVGKINSPVLIRQLG 357

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
            +L      T  + G     +        +      EV K + +     ++ +  +E  K
Sbjct: 358 AALNAGNPVTNAVPGDDAAYVGFTLEQIAARPAMLNEVAKQLNDDYVAAESLKLAREAAK 417

Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
              + +    ++    R +   ++    V+     V     A   Y  Q   R+     P
Sbjct: 418 AELDRI---KALKPAERAKAFAALKNCKVEEFEASVSQMPPAGFEYAMQAAVRL----HP 470

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
                 V  P+G+ +  ++ E IPA  ++ E         ++  K  E+++  A +
Sbjct: 471 GELTPVVDTPNGAAIA-ELLERIPADMKEFEAKKALYTGIFRQRK--EQMARLAFE 523


>gi|218297017|ref|ZP_03497694.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermus aquaticus
           Y51MC23]
 gi|218242572|gb|EED09109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermus aquaticus
           Y51MC23]
          Length = 603

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 86/656 (13%), Positives = 190/656 (28%), Gaps = 144/656 (21%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG- 72
             I    L + F+   +   L     +        + V + +    ++ +L  +      
Sbjct: 9   VTILFGFLALAFV---VGAILLFTPQAGQEAK--GKPVLWVNGKAVYELDLLRLQGNDPL 63

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
           +  N +    V +D   L+ ++    L Q      +      V  E+ R      +    
Sbjct: 64  YAANPQGLLKVLVDTHFLEQVILTEALKQDAAR--IRVGSAEVRKEVDRI---REQYGLR 118

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
               +   L + G  + +        L     +                           
Sbjct: 119 DKKAYEQFLNQIGYTDAQLRAEIKAQLQIQKRLEQVRSS--------------------- 157

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                        A P+   +  +FE ++++Y+                           
Sbjct: 158 -------------AKPTPEEVRFYFEVHQEDYKTEPRV---------------------- 182

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK--SLSDI 310
                                Q+V  ++K A+E     K G+ F  LA++  K  +    
Sbjct: 183 ------------------QARQIVVDDKKVAEEVLAKAKAGEDFTALAKKYSKVGAEQGG 224

Query: 311 SLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +LG+   E  P           +A+++F+L   G     I     Y I  V    P    
Sbjct: 225 ALGAAPGESAPKPVTKVVFPEKVAEAVFALKGPG-LVGPIEAGGRYYIVKVEAYLPPKVP 283

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEF-----------LALGTSMDEISRREKIV 411
           +F+EVK  +       KA+  ++   + L +            +    ++  ++ RE ++
Sbjct: 284 TFEEVKDQVEKDAGDAKANGALEAYLEDLRKKAQVRFAEGVGYVYKNPAVATVNEREILL 343

Query: 412 SIDLPLVDFAGKDVK-----GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP------- 459
           S  L  V    +          E+A   +  Q L R+  ++  +        P       
Sbjct: 344 SQVLQPVFSNQQTAALIQQGLGELAVQFFLPQTLERLVDQEILVGAAKKSGKPFIGSKDE 403

Query: 460 -DGSYMWVQIKESIPARDRKLEEVLT-----------DVKKDWKTVKTAEEVSSKANQLV 507
              +Y+  + ++          E                  +   V   EE  +KA +  
Sbjct: 404 VAQAYLLYETRDVTA----TEAEARRFYAENPAFFTIPASAEVVGVVFQEEAKAKAFR-- 457

Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG-ISQVF-SGPVEMVKCFPI 565
            E + +  + + + K  G ++     +N              + + F  G +  V     
Sbjct: 458 -EAALKASDLQALAKAHGGTVTEYGAVNPGQLPAVLDRLVFKVKEAFPKGSLGEVSEVVK 516

Query: 566 ENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               ++ V  + N K   ++     K++ +  +     ++   ++I  L+ +  V 
Sbjct: 517 LEDGTFTVLLIKNRKPEELKPFEAVKEEALEGVINRKRQEKAQALIQKLRQEAKVE 572



 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           + +  +  E +  Y +N   +  P    V  +VF  + +A    ++  K      LA+  
Sbjct: 414 RDVTATEAEARRFYAENPAFFTIPASAEVVGVVFQEEAKAKAFREAALKASDLQALAKAH 473

Query: 304 GKSLSDISLGSFSKEYIPDV-----SLADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIK 357
           G +++    G+ +   +P V           F     G+ + V+    G + +  + N K
Sbjct: 474 GGTVT--EYGAVNPGQLPAVLDRLVFKVKEAFPKGSLGEVSEVVKLEDGTFTVLLIKNRK 531

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           P     F+ VK++    +   K  EK +   ++L +   +   + ++       + + P 
Sbjct: 532 PEELKPFEAVKEEALEGVINRKRQEKAQALIQKLRQEAKVENRLAQVLAELTPKTEEKPK 591

Query: 418 VDFAGKDVKGKE 429
            +   ++   K 
Sbjct: 592 EEAPKEEAPAKP 603



 Score = 45.8 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 6/138 (4%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           +   K   E     + +  +++       +   V+       G+  A +      +   F
Sbjct: 450 EAKAKAFREAALKASDLQALAKAHGGTVTEYGAVN------PGQLPAVLDRLVFKVKEAF 503

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
            K         V L DG++  + IK   P   +  E V  +  +     K  E+  +   
Sbjct: 504 PKGSLGEVSEVVKLEDGTFTVLLIKNRKPEELKPFEAVKEEALEGVINRKRQEKAQALIQ 563

Query: 505 QLVLEYSKEGKNFRDIGK 522
           +L  E   E +  + + +
Sbjct: 564 KLRQEAKVENRLAQVLAE 581


>gi|170763930|ref|ZP_02635346.2| putative foldase protein PrsA [Clostridium perfringens B str. ATCC
           3626]
 gi|170764086|ref|ZP_02631748.2| putative foldase protein PrsA [Clostridium perfringens E str.
           JGS1987]
 gi|170662690|gb|EDT15373.1| putative foldase protein PrsA [Clostridium perfringens E str.
           JGS1987]
 gi|170712067|gb|EDT24249.1| putative foldase protein PrsA [Clostridium perfringens B str. ATCC
           3626]
          Length = 326

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 104/356 (29%), Gaps = 73/356 (20%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL---DKKILDNLVS 95
             +TV +V  +K+      +  K     +  + G     +   +  +    + ++  LV+
Sbjct: 18  DKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVAQQILQQRQSVVQGLVT 77

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L    + +G++     +  ++     F         D F   L  EG  E  + D  
Sbjct: 78  DKVLGIEADKLGIKPSEEEIKKKV--DEQFENIKKGM-GDNFDKALEAEGYTEDTFKDVI 134

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
              +    V    +                                       ++    +
Sbjct: 135 KNQVINQAVQDYII----------------------------------KDVKVTDEDAQK 160

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++++ K  + A +   ++  L   +          +E Q  Y++ +    +         
Sbjct: 161 YYDENKQQFVAKDSGVLTKHLLFEN---------EEEAQKAYDEIQSGKTTF-------- 203

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
                   ++ F   +  K        + K     +LG    E    V          K+
Sbjct: 204 --------NDLFTKYENNKS-------ENKKPIAENLGVVPAENSGLVQEFVDGLKPLKE 248

Query: 336 GDFTPVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+ +  I   FGY I       +    + F EVK  I   ++  K SEK K D  +
Sbjct: 249 GEISKPIKTQFGYHIIQAGATYEKGAQLPFDEVKSQIIQILKQQKDSEKFKADMDQ 304


>gi|124516598|gb|EAY58106.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum
           rubarum]
          Length = 324

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 88/214 (41%), Gaps = 16/214 (7%)

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY------KRISYILFDVHEK 242
             +V    L               +  + + +   +  PE       ++  ++       
Sbjct: 90  RETVQDFFLEEEGKKRGIKIRPNEIKDYLKNH---FPQPEKSLEPFARKALFLQKTEEAL 146

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
               +IS    ++ Y+ ++  +       V+ +V   Q+EA+    +L KG  F +LA+ 
Sbjct: 147 APFPDISISTERSFYKNHQNLFRISRQAIVDHIVVAKQEEAESIRDALIKGSSFARLAKL 206

Query: 303 QG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           +    ++ S   +  + +  +P     D++F++ K G+ TPV+   +GY +  +    P 
Sbjct: 207 ESLGMEASSGGRMKPYPRGTMPPP--FDTVFTM-KPGEITPVLSSPYGYHLFRLEKFIPE 263

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKE-DYKRLE 392
            T+SF  VK  I  ++   K  + ++E   ++L+
Sbjct: 264 HTLSFSMVKNWIKKKLTRVKRQKVLQEWLAQKLQ 297



 Score = 41.5 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 24/198 (12%)

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK---DI 371
           F +        A     L K  +                 +I  S   SF +  +    I
Sbjct: 122 FPQPEKSLEPFARKALFLQKTEEALAPFP-----------DISISTERSFYKNHQNLFRI 170

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
           + Q  +       +E+ + + + L  G+S   ++   K+ S+ +            +   
Sbjct: 171 SRQAIVDHIVVAKQEEAESIRDALIKGSSFARLA---KLESLGMEASSGGRMKPYPRGTM 227

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
             P+      +       LS  +        Y   ++++ IP        V   +KK   
Sbjct: 228 PPPFDTVFTMKPGEITPVLSSPY-------GYHLFRLEKFIPEHTLSFSMVKNWIKKKLT 280

Query: 492 TVKTAEEVSSKANQLVLE 509
            VK  + +     Q + +
Sbjct: 281 RVKRQKVLQEWLAQKLQK 298


>gi|319407575|emb|CBI81225.1| peptidyl-prolyl cis-trans isomerase [Bartonella sp. 1-1C]
          Length = 308

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 62/149 (41%), Gaps = 4/149 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           +I++ +++A Y+K        +      ++   ++EA++  + L KG+ F ++A++    
Sbjct: 128 KIADADVKALYDKEIAALPKEDEIKARHILVKTKEEAEKVIKRLHKGENFEEIAKKDSTD 187

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG FS+  +      ++ F+L         +   FG+ +  + + +      
Sbjct: 188 GSSAVGGDLGYFSRGQMVKP-FEEAAFNLKVGEYTKKPVESPFGWHVIKIEDRRLKQPPV 246

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
           F +VK  +  Q+        + +   ++ 
Sbjct: 247 FDDVKDVLRTQLIREHYQTLITDLRGKIN 275


>gi|228945944|ref|ZP_04108286.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228813692|gb|EEM59971.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 288

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246
           Y ++ ++ +      S+    +  E+ KD    N++   E   +        + + +I  
Sbjct: 60  YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 119

Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 120 EKAIKATVTEKDIKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 279



 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           ++K +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 131 DIKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 190

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 191 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 240

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V E  K+
Sbjct: 241 IRKDIEQQRLQDTTGKWKQQVVNELLKD 268



 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 269

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 270 DIKVNDK 276


>gi|217963619|ref|YP_002349297.1| foldase protein PrsA [Listeria monocytogenes HCC23]
 gi|217332889|gb|ACK38683.1| foldase protein PrsA [Listeria monocytogenes HCC23]
          Length = 293

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 30/213 (14%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247
           +      S+  + + F +YK  Y                    ++ Y L      E   +
Sbjct: 62  LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 121

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  YE      + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     
Sbjct: 122 TSDKVLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175

Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G     + P   D +   + ++L  KGD +  +   +GY I  +   KP+   +F
Sbjct: 176 ATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233

Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLE 392
           ++ KK +       Q+      + +K++YK   
Sbjct: 234 EKDKKAVKASYLESQLTTENMQKTLKKEYKDAN 266


>gi|290893167|ref|ZP_06556155.1| rotamase [Listeria monocytogenes FSL J2-071]
 gi|290557329|gb|EFD90855.1| rotamase [Listeria monocytogenes FSL J2-071]
          Length = 293

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 30/213 (14%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247
           +      S+  + + F +YK  Y                    ++ Y L      E   +
Sbjct: 62  LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 121

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  YE      + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     
Sbjct: 122 TSDKVLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175

Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G     + P   D +   + ++L  KGD +  +   +GY I  +   KP+   +F
Sbjct: 176 ATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233

Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLE 392
           ++ KK +       Q+      + +K++YK   
Sbjct: 234 EKDKKAVKASYLESQLTTENMQKTLKKEYKDAN 266


>gi|257066380|ref|YP_003152636.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus
           prevotii DSM 20548]
 gi|256798260|gb|ACV28915.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus
           prevotii DSM 20548]
          Length = 249

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 77/162 (47%), Gaps = 9/162 (5%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           +H+  +++ I++DE++  YE+NKE    P +     ++  + + A++    ++KG  F  
Sbjct: 86  MHKIFEEVNINDDEIKKYYEENKETINPPILYEASHILVKDLETAEKVRGEIEKGLSFED 145

Query: 299 LAEEQGKSLS---DISLGSFSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            A++     S     SLG F K  +        D+I    + G+ +  +   FGY +  +
Sbjct: 146 AAKKYSIDPSKENGGSLGKFPKGVMVKEFQEGLDAI----EVGEISAPVKSQFGYHLIKL 201

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           +N +   T  F+E+K  +  ++ + K  E   E   ++++ +
Sbjct: 202 TNKENVETPKFEEIKSQVGQRLIMAKRQEAYLEKLGKIKKDV 243


>gi|229160113|ref|ZP_04288114.1| Foldase protein prsA 1 [Bacillus cereus R309803]
 gi|228623324|gb|EEK80149.1| Foldase protein prsA 1 [Bacillus cereus R309803]
          Length = 287

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 28/192 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + +++ K  Y               E  +         EK  +  I++ EL+
Sbjct: 67  KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA++  +         
Sbjct: 127 ENYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +      D+ + L KK + +  +   FGY I  V++IK     SF + K +
Sbjct: 178 DLGFFGPGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFDQSKDE 234

Query: 371 IANQMRITKASE 382
           I  ++   KA +
Sbjct: 235 IKKEIVQKKAQD 246



 Score = 37.3 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             T++ +E+K++   +++ +    K +   K+++E L  G S +E++++    +      
Sbjct: 117 EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G    GK V         L +    +   S+          Y  +++ +     ++ 
Sbjct: 177 GDLGFFGPGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EKS 227

Query: 479 LEEVLTDVKKDWKTVKTAE 497
            ++   ++KK+    K  +
Sbjct: 228 FDQSKDEIKKEIVQKKAQD 246


>gi|228914927|ref|ZP_04078532.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228927396|ref|ZP_04090453.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933628|ref|ZP_04096478.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826088|gb|EEM71871.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832292|gb|EEM77872.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228844723|gb|EEM89769.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 288

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246
           Y ++ ++ +      S+    +  E+ KD    N++   E   +        + + +I  
Sbjct: 60  YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 119

Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 279



 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 131 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 190

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 191 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 240

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V E  K+
Sbjct: 241 IRKDIEQQRLQDTTGKWKQQVVNELLKD 268



 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 269

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 270 DIKVNDK 276


>gi|261856056|ref|YP_003263339.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
           neapolitanus c2]
 gi|261836525|gb|ACX96292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
           neapolitanus c2]
          Length = 325

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 74/184 (40%), Gaps = 6/184 (3%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           + +   K+++++ ELQ EY +  + Y          ++   ++EAD   + L  G  F Q
Sbjct: 139 LSDYLSKMKVTDAELQPEYNQFVKGYPKTTQYKAAHILVKTKEEADAIIKQLDSGTPFDQ 198

Query: 299 LAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+E+ +          LG F  + +     + ++  L K       +   FG+ +  + 
Sbjct: 199 LAKEKSQDPGSAKQGGELGWFDADQMV-PEFSAAVEKLKKGEITQQPVKSQFGWHVIKLE 257

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRREKIVSI 413
           + + +   +F E+K  +  Q R     + +K+   + +   +A+  ++          S 
Sbjct: 258 DTRLAQPPTFAELKPQLETQYRRAAIEDLIKKLRTKAKINIMAVPATLQTAPAEASKPSE 317

Query: 414 DLPL 417
           +   
Sbjct: 318 EAAP 321



 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/133 (9%), Positives = 46/133 (34%), Gaps = 2/133 (1%)

Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFG 545
              +K      +   +A+ ++ +    G  F  + K       +  Q   +   +     
Sbjct: 167 TTQYKAAHILVKTKEEADAIIKQLD-SGTPFDQLAKEKSQDPGSAKQGGELGWFDADQMV 225

Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605
            +  + V       +   P+++   + V K+ ++++       +    L     +  ++ 
Sbjct: 226 PEFSAAVEKLKKGEITQQPVKSQFGWHVIKLEDTRLAQPPTFAELKPQLETQYRRAAIED 285

Query: 606 VIAYLKSQYSVTV 618
           +I  L+++  + +
Sbjct: 286 LIKKLRTKAKINI 298


>gi|330991867|ref|ZP_08315816.1| Cell-binding factor 2 [Gluconacetobacter sp. SXCC-1]
 gi|329760888|gb|EGG77383.1| Cell-binding factor 2 [Gluconacetobacter sp. SXCC-1]
          Length = 305

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 59/158 (37%), Gaps = 6/158 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++++ ++  Y++N       E      ++  ++ EA++  + LK G  F QLA +    
Sbjct: 136 TLTDEAVKTYYDQNYANKPGAEEVHARHILVKSEAEANDIIKQLKAGADFGQLATKLSTD 195

Query: 307 LS-----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     LG F K  +   +  D+  ++         +H  +G+ +  V   + + T
Sbjct: 196 PGSAKQNGGDLGWFKKGDML-PTFWDAASAMQPNSFSQTPVHTQYGWHVIQVLGKRTAPT 254

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
            +   ++  I  ++      + V     +++       
Sbjct: 255 PTLDAMRDQIRQKLIQEGVQKAVSNALSQVKVVRFGPD 292


>gi|229184548|ref|ZP_04311751.1| Foldase protein prsA 1 [Bacillus cereus BGSC 6E1]
 gi|228598959|gb|EEK56576.1| Foldase protein prsA 1 [Bacillus cereus BGSC 6E1]
          Length = 288

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246
           Y ++ ++ +      S+    +  E+ KD    N++   E   +        + + +I  
Sbjct: 60  YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 119

Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 279



 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 131 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 190

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 191 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 240

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V E  K+
Sbjct: 241 IRKDIEQQRLQDTTGKWKQQVVNELLKD 268



 Score = 38.4 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 269

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 270 DIKVNDK 276


>gi|315924379|ref|ZP_07920601.1| peptidyl-prolyl cis-trans isomerase [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622258|gb|EFV02217.1| peptidyl-prolyl cis-trans isomerase [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 266

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 76/181 (41%), Gaps = 10/181 (5%)

Query: 218 EKYKDNY-RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           E+Y+  +    E    SY++         +++  DEL+  Y +N++K+ +P+      ++
Sbjct: 79  EEYQKEFAEMTEKFLKSYMI---SHFMSSVKVEEDELRQYYNENQDKFIAPDSVRCSHIL 135

Query: 277 FPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFS 331
            P +++A +  + +   GK F Q A+      S       LG F K  +       + FS
Sbjct: 136 VPAKQQAIDIIEEIDTGGKTFEQAAKAYSADASNKDRGGDLGYFHKGQMV-AEFEMAAFS 194

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           L      +  +   FG+ I   ++ K +  V ++  +  +   +   K + +   + + L
Sbjct: 195 LNPGEMTSAPVQTQFGWHIIQCTDHKTNEIVPYEAARDSLHRFLLGQKQNRRYVAEAEDL 254

Query: 392 E 392
           +
Sbjct: 255 K 255


>gi|296117344|ref|ZP_06835934.1| peptidylprolyl isomerase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976110|gb|EFG82898.1| peptidylprolyl isomerase [Gluconacetobacter hansenii ATCC 23769]
          Length = 308

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 60/156 (38%), Gaps = 6/156 (3%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           ++D ++A Y+KN       E      ++ P +++A++  + LK G  F  LA +  K   
Sbjct: 137 TDDAVKAYYDKNYANKPGAEEIHARHILVPTEEQANDIIKQLKGGANFADLATKLSKDPG 196

Query: 309 -----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                   LG F K  +   +  D+  +L         +H  +G+ +  V   + + T +
Sbjct: 197 SAKQNGGDLGWFKKGDML-PAFWDAASTLQPNSFSQTPVHTQYGWHVIQVLGKRTAATPT 255

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
              ++  I  ++      + V     +++       
Sbjct: 256 LDSMRDQIRQKLIQEGVQKAVSSAVGQVKIVRYGPD 291


>gi|206971674|ref|ZP_03232624.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH1134]
 gi|206733659|gb|EDZ50831.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH1134]
          Length = 283

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 55  YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 114

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  +++ +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 115 EKAIKATVTDKDVKDNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 165

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 166 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F EVK  I   +   +  +   +  +++   L     +   ++  K  
Sbjct: 225 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 276



 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 88/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 44  ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 102

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 103 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKDN 130

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 131 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 190

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      +   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 191 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 240

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V +  K+
Sbjct: 241 EQQRLQDTTGKWKQQVVNDLLKD 263



 Score = 38.8 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + + E    G++F  + K       +  Q   +             +         
Sbjct: 145 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 204

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KDK    + Q   +D        V+  L    
Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 264

Query: 615 SVTVHDN 621
            + V++ 
Sbjct: 265 DIKVNNK 271


>gi|229028826|ref|ZP_04184927.1| Foldase protein prsA 1 [Bacillus cereus AH1271]
 gi|228732397|gb|EEL83278.1| Foldase protein prsA 1 [Bacillus cereus AH1271]
          Length = 288

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 78/192 (40%), Gaps = 28/192 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + +++ K  Y               E  +         EK  +  I++ EL+
Sbjct: 68  KVDDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 127

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA++  +         
Sbjct: 128 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 178

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG FS   +      D+ + L KK + +  +   FGY I  V++IK     SF++ K D
Sbjct: 179 DLGFFSSGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKDD 235

Query: 371 IANQMRITKASE 382
           I  ++   KA +
Sbjct: 236 IKKEIVQKKAQD 247



 Score = 37.7 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             T++ +E+K +   +++ +    K +   K+++E L  G S +E++++    +      
Sbjct: 118 EKTITDKELKDNYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 177

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G    GK V         L +    +   S+          Y  +++ +     ++ 
Sbjct: 178 GDLGFFSSGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EKS 228

Query: 479 LEEVLTDVKKDWKTVKTAE 497
            E+   D+KK+    K  +
Sbjct: 229 FEQSKDDIKKEIVQKKAQD 247


>gi|118588533|ref|ZP_01545942.1| hypothetical protein SIAM614_24667 [Stappia aggregata IAM 12614]
 gi|118439239|gb|EAV45871.1| hypothetical protein SIAM614_24667 [Stappia aggregata IAM 12614]
          Length = 296

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           E++++E+QA Y+K    +   E      ++  ++ EA+     L  G  F +LA E+   
Sbjct: 116 EVTDEEVQAAYDKEFADFEGAEEINARHILVKDKAEAEAIIAELDGGADFAELAREKSTG 175

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S     SLG F+K  +       + F+L         +   FG+ +  + + +     +
Sbjct: 176 PSGPNGGSLGYFAKGQMV-PPFEAAAFALEPGTYTKEPVETQFGWHVIKLEDKRRQEKPA 234

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391
           F+EV   +  Q+   +   ++ E   ++
Sbjct: 235 FEEVANGLRQQLMRERYDARMAELKDQV 262



 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 7/159 (4%)

Query: 469 KESIPARDRKLE--EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           +E   A D++    E   ++      VK      ++A  ++ E    G +F ++ +    
Sbjct: 120 EEVQAAYDKEFADFEGAEEINARHILVKD----KAEAEAIIAELD-GGADFAELAREKST 174

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
                N  +              +  F+         P+E    + V K+ + +      
Sbjct: 175 GPSGPNGGSLGYFAKGQMVPPFEAAAFALEPGTYTKEPVETQFGWHVIKLEDKRRQEKPA 234

Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
            ++  + L Q + ++  D+ +A LK Q +V + D  + +
Sbjct: 235 FEEVANGLRQQLMRERYDARMAELKDQVAVEIVDESLAK 273


>gi|315283321|ref|ZP_07871537.1| foldase protein PrsA [Listeria marthii FSL S4-120]
 gi|313613042|gb|EFR86968.1| foldase protein PrsA [Listeria marthii FSL S4-120]
          Length = 292

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 84/208 (40%), Gaps = 26/208 (12%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247
           +      S+  + + F +YK  Y                    ++ Y +      E   +
Sbjct: 62  LSDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNMLVQKATEANTD 121

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  Y+      + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     
Sbjct: 122 TSDKALKEYYKT-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175

Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G   + + P   D +   + ++L  KGD +  +   +GY I  +    P+   +F
Sbjct: 176 ATKENGGKLEPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMDE--PATKTTF 233

Query: 365 QEVKKDIANQ-MRITKASEKVKEDYKRL 391
            + KK +    ++    +E +++  K++
Sbjct: 234 DKDKKAVKESYLQSQLTTENMQKTLKKV 261


>gi|291515888|emb|CBK65098.1| PPIC-type PPIASE domain [Alistipes shahii WAL 8301]
          Length = 676

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 85/695 (12%), Positives = 209/695 (30%), Gaps = 108/695 (15%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L  +R      V  I + +  + F++  L   +        V  +  +K+ +S + + ++
Sbjct: 4   LNTLRTKF-GIVLSIIIALALLAFILS-LKTEMGFSGNDPRVGVIDGEKINYSEYYDQYE 61

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH-GRVWGEIA 120
                 + +      S+  +S  L       L++   L    + +GL      R+     
Sbjct: 62  TIKSQNNMQ-----ESDEQQSAMLANAAWQALIAKHVLTPGFDRMGLRVTEPERLAMVSG 116

Query: 121 RSP------LFHGK-DNKFSHDVFVSRLAREGINEK------EYIDHYTKMLSRTDVVGM 167
           + P       F      ++S       LA+   N +      +  +            G+
Sbjct: 117 QHPSQAFYNAFADPRTGEYSVAAISQFLAQAETNPEAANAWAQLNEQARLEREVQKYFGL 176

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRA 226
             GG+  ++L + +      ++ S  +       VP  +   S+  +  ++  +K+ ++ 
Sbjct: 177 VKGGVYVNSLEVARGVEAANKSFSGKWAGKKFSAVPDSLVKVSSGDVKAYYNSHKNQFKQ 236

Query: 227 PEYKRISYILFDVHEKEKKI-----EISN--------DELQAEYEKNK------------ 261
              + ISY++F+V   +  +      ++         +E++     N+            
Sbjct: 237 TPSRTISYVVFEVSPTDDDLLALEKSVTEVGREFAAAEEVKTFVRANRNGKIADSYVSAA 296

Query: 262 -------------------------------EKYFSPEIRTVEQLVFP--NQKEADEAFQ 288
                                          +    P+   V  +V P   +  AD    
Sbjct: 297 QLSDEEAKALMAGEMYGPVLKNNEWTMSRALDSKMVPDSVGVRHIVLPYAQEALADSLLT 356

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA---DSIFSLAKKGDFTPVIHGS 345
            LKKG  F Q A       +  + G      +P  +      +  + A++GD   +  G 
Sbjct: 357 VLKKGGDFAQTAARYSVYDATAANGGEV-GVLPFSAFTGEFAAALANARQGDIVKIASGD 415

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
                  +  +  +   S       I   +  + A+ +  + + +   F+          
Sbjct: 416 A----IQLMQVYRADKPSKHVQVATITYPVEASAATRR--DVHNQAGSFMVNAKGSAAAF 469

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
                 +   P V    +    + +  +    ++    +G  +       +      Y+ 
Sbjct: 470 ADAASTAAVTPRVAAIAQG--DRTIRGLEDSREVARWAYGAKE--GDLSAIFNVGKDYVI 525

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
             + E        L +V   ++      K       K + +V      G    +   +LG
Sbjct: 526 ATLTEIDDNEYAPLNKVSAQIRSQLLRDK-------KYDYIVKSL--SGSTLAEQAASLG 576

Query: 526 ASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
           + +   + +          G +   +  + S     +   P++      VF+V + K   
Sbjct: 577 SEVEDFSDVTFGSFYVNGVGMEPRLVGAIASAEKGAL-SAPVKGLSGVYVFEVGDVKTDD 635

Query: 584 VQEKDKFISYLTQMMNKDLLDSV-IAYLKSQYSVT 617
            ++  +      Q M + +     I  ++    + 
Sbjct: 636 -KQTAEGEKVRAQAMAEGMAQQFAIPAIQQMAKIQ 669


>gi|182626803|ref|ZP_02954541.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens D str. JGS1721]
 gi|177907849|gb|EDT70447.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 248

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 99/249 (39%), Gaps = 21/249 (8%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFEN----------RSVDYIVLNNRHVPAIADPS 209
               V+         S+ + +   R+  +           R V    +    +   A  +
Sbjct: 1   MEKKVLATVGNTEITSDYIDEIIARYPAQQQAMLASDEGKRQVLEQAIAFELMSEFAKET 60

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
               T+ F+   + +      +       + +    + +++DE +A Y+++KE +   E 
Sbjct: 61  GLDKTEEFKDQLNKF-----AKELLAQMVMKKTLSSVTVTDDEAKAFYQEHKENFVELET 115

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
            T + ++  +++EA +  + +  G   F   A +     S     +LGSFSK  +     
Sbjct: 116 VTAKHILVASEEEAKKVEEEIASGSITFEDAANKYSSCPSKEQGGNLGSFSKGMMV-PEF 174

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            ++ F+L + G  +  +   FGY +  V +   + T +F++VK+ + N +   +  +K  
Sbjct: 175 EEAAFNL-ELGVVSAPVKTQFGYHLIKVEDKTEAKTKAFEDVKEQVVNMLIQERQQKKYL 233

Query: 386 EDYKRLEEF 394
           E  K L E 
Sbjct: 234 ELIKELREK 242


>gi|229190397|ref|ZP_04317398.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876]
 gi|228593181|gb|EEK50999.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876]
          Length = 293

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 65  YQMMLSKALLDKYKVSDEEAKKKVEEAKDKRGENFKSTLEQLGLKNEDELKEKMKPEIAF 124

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           E+  K  +++ +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 125 EEAIKATVTDKDVKDNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 176 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 234

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F EVK  I   +   +  +   +  +++   L     +   ++  K  
Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286



 Score = 43.8 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 89/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 54  ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKRGENFKSTLEQLGLKNED- 112

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++  ++I +                             TV+ ++VK +
Sbjct: 113 ---ELKEKMKPEIAFEEAIKA-----------------------------TVTDKDVKDN 140

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 200

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      +   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 201 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V +  K+
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273



 Score = 38.8 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + + E    G++F  + K       +  Q   +             +         
Sbjct: 155 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KDK    + Q   +D        V+  L    
Sbjct: 215 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274

Query: 615 SVTVHDN 621
            + V++ 
Sbjct: 275 DIKVNNK 281


>gi|303256912|ref|ZP_07342926.1| probable parvulin-type peptidyl-prolyl cis-trans isomerase
           [Burkholderiales bacterium 1_1_47]
 gi|302860403|gb|EFL83480.1| probable parvulin-type peptidyl-prolyl cis-trans isomerase
           [Burkholderiales bacterium 1_1_47]
          Length = 261

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 8/154 (5%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           ++  K  +S  E++A YE+ K    + E   V  ++  +QK A+   + L  G  F  LA
Sbjct: 103 DEMAKHPVSEKEIKARYEEEKAALGNKEY-EVSHILVKDQKTAENIEKKLAAGGNFAALA 161

Query: 301 EEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355
           +E             LG  ++  +     AD++ ++ KKG+ +   +   FG+ I  V++
Sbjct: 162 KEFSVDTGAKENGGDLGW-NRPAVFVKPFADAVKNM-KKGEISKAPVKTEFGWHIIKVND 219

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           +K     ++  VK  I   + + K    + E  K
Sbjct: 220 VKEVPFPTYDSVKDQIREGLELKKQQNFLNELMK 253


>gi|228921035|ref|ZP_04084370.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838581|gb|EEM83887.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 293

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 65  YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  +++ +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 125 EKAIKATVTDKDVKDNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 176 KQYSEDTGSKEQGGEISSFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 234

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F EVK  I   +   +  +   +  +++   L     +   ++  K  
Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286



 Score = 43.8 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 88/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 54  ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKDN 140

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISSFAPGQTV 200

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      +   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 201 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V +  K+
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273



 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + + E    G++F  + K       +  Q   + +           +         
Sbjct: 155 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISSFAPGQTVKEFEEAAYKLDAGQ 214

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KDK    + Q   +D        V+  L    
Sbjct: 215 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274

Query: 615 SVTVHDN 621
            + V++ 
Sbjct: 275 DIKVNNK 281


>gi|330998838|ref|ZP_08322565.1| putative peptidylprolyl isomerase PrsA1 [Parasutterella
           excrementihominis YIT 11859]
 gi|329576052|gb|EGG57571.1| putative peptidylprolyl isomerase PrsA1 [Parasutterella
           excrementihominis YIT 11859]
          Length = 261

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 8/154 (5%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           ++  K  +S  E++A YE+ K    + E   V  ++  +QK A+   + L  G  F  LA
Sbjct: 103 DEMAKHPVSEKEIKARYEEEKAALGNKEY-EVSHILVKDQKTAENIEKKLAAGGNFAALA 161

Query: 301 EEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355
           +E             LG  ++  +     AD++ ++ KKG+ +   +   FG+ I  V++
Sbjct: 162 KEFSVDTGAKENGGDLGW-NRPAVFVKPFADAVKNM-KKGEISKAPVKTEFGWHIIKVND 219

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           +K     ++  VK  I   + + K    + E  K
Sbjct: 220 VKEVPFPTYDSVKDQIREGLELKKQQNFLNELMK 253


>gi|220919569|ref|YP_002494873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219957423|gb|ACL67807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 338

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 99/346 (28%), Gaps = 71/346 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V                +  +      ++AR+  L +   D +VS    
Sbjct: 37  DRVAAIVNGDVVTLQELEQRAAALGLAAADALPAGPARDKARADALRR-AFDQVVSDKLF 95

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            +  +++ +E    +V   I        K N F+     S LA EG +  +Y        
Sbjct: 96  AEKAKELEIEVTEKQVDDAIEGV----KKQNGFTDAQLESALASEGYSMTDYRARIR--- 148

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                                         R +    L    V      S   L  +++ 
Sbjct: 149 ------------------------------RELQNFSLLQYKVAGKIKTSEEDLRNYYQS 178

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +   +   +  R+ +I     E                    E     E R V       
Sbjct: 179 HPQEFDGEDEVRVRHIFIPFAEGGG--------------AQAEAQARAEGRRV------- 217

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
                   Q LK G+ F  +A+       +     LG   +  I   +L D+ F+L K G
Sbjct: 218 -------LQRLKTGEDFGAVAKAVSRGPSAEEGGELGWLKRGTI-HRTLEDAAFAL-KTG 268

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           + + ++    G  I  V   +     SF++ + +I  ++   +A  
Sbjct: 269 EMSGLVEAGPGVHILKVEERRRGGGKSFEQARDEIRQRLGEEQAEN 314


>gi|163745064|ref|ZP_02152424.1| PPIC-type PPIASE domain protein [Oceanibulbus indolifex HEL-45]
 gi|161381882|gb|EDQ06291.1| PPIC-type PPIASE domain protein [Oceanibulbus indolifex HEL-45]
          Length = 282

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 70/159 (44%), Gaps = 5/159 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK- 305
           ++S++ELQA Y+   +     +      ++   ++EAD     L+ G  F ++A+E+   
Sbjct: 115 DVSDEELQAAYDAQYKDAEPEQEFNASHILVETKEEADAIKAELEGGADFAEVAKEKSTG 174

Query: 306 --SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                  SLG F    +      +++  + + G  +  +   FG+ +  ++  +     +
Sbjct: 175 PSGPGGGSLGWFGPGMMV-PEFEEAVAGM-EAGGVSEPVETQFGWHVIKLNETRTGEAPA 232

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            ++V++++  Q+R TK    ++   +  +   +    +D
Sbjct: 233 LEDVREELETQVRQTKVQTAIESLTEAAKVDRSAAEGID 271


>gi|30248886|ref|NP_840956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
 gi|81722212|sp|Q82W17|SURA_NITEU RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|30138503|emb|CAD84793.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
          Length = 448

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/418 (13%), Positives = 134/418 (32%), Gaps = 69/418 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +         +  +  + ++     N++  R   L+K++L+ L+     
Sbjct: 45  DRIVAVVNEEVITQQEINEVLQNTVQQLQRQ-----NTQLPRMEILEKQLLERLILKRIQ 99

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM- 158
            Q  ++IGL      +   + R      +DN  + D F   L +EG +   + +      
Sbjct: 100 LQRAKEIGLTVSDNDLDQTLRRI----IQDNHLTMDEFRQVLLQEGTDMNRFREEIRGEI 155

Query: 159 ----LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
               L   +V           +  L         N       +    V        A + 
Sbjct: 156 LMSRLKEQEVNSRVNVTENEIDNFLQNQANSPAGNEEYRIAHI---LVQISEQMDEAQIE 212

Query: 215 QWFEKYKDNYRAPEY----KRISYILFDVHEKEKK-------------------IEISND 251
              ++ +  Y +        R+S    D  +  +                    + +   
Sbjct: 213 ARHKRAETAYESLRQGADFVRVSAEFSDAPDAMQGGELGWRPLGQLGSPFTEMLVNMQPG 272

Query: 252 ELQ------------AEYEKNKEKYFSP--EIRTVEQLVFP-----NQKEA----DEAFQ 288
           E+                E+ +++      E    + ++       ++++A    ++  +
Sbjct: 273 EVTPVVRSPVGFHILKLLERRQQEQKVTIIEQTHAQHILIKVSELVSEEDAHQLINQLME 332

Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            +  G  F+ +A+   +  S      LG  S           ++ +L   G  +P +   
Sbjct: 333 RIHNGADFMDVAKAHSEDASASAGGDLGWVSPGDTV-PEFEQAMNALL-PGQVSPPVRTP 390

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
           FG+ +  V   + S  VS ++ ++   + +   KA   V+E  ++L +   +   +++
Sbjct: 391 FGWHLIKVIERR-SQDVSERQQREAARHTIHARKADAIVQEWLQQLRDQAYVEYKVED 447


>gi|196033913|ref|ZP_03101324.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus W]
 gi|195993593|gb|EDX57550.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus W]
          Length = 283

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246
           Y ++ ++ +      S+    +  E+ KD    N++   E   +        + + +I  
Sbjct: 55  YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 114

Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 115 EKAIKATVTEKDIKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 166 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 274



 Score = 38.8 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           ++K +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 126 DIKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 185

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 235

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V E  K+
Sbjct: 236 IRKDIEQQRLQDTTGKWKQQVVNELLKD 263



 Score = 38.4 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 204

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 264

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 265 DIKVNDK 271


>gi|126738446|ref|ZP_01754151.1| PPIC-type PPIASE domain protein [Roseobacter sp. SK209-2-6]
 gi|126720245|gb|EBA16951.1| PPIC-type PPIASE domain protein [Roseobacter sp. SK209-2-6]
          Length = 283

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 60/147 (40%), Gaps = 5/147 (3%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           +++ L+A YEK        +      ++  +++ A +  Q L  G  F  LA+E     S
Sbjct: 117 TDEALRAAYEKKYSSGDGGDEFHASHILVESEETALDIKQELDAGADFAVLAKEYSTGPS 176

Query: 309 D---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 LG F++  +      +++  + + G+ +  +   FG+ +  +   + +   SF+
Sbjct: 177 GPNGGDLGWFTQGRMV-PEFEEAVLEM-RSGEVSEPVQTQFGWHVIMLKERRKTAAPSFE 234

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLE 392
           E +  +  +++      ++       E
Sbjct: 235 EARGQLVQELQNEAIEARISALTSAAE 261


>gi|120612784|ref|YP_972462.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
 gi|120591248|gb|ABM34688.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
          Length = 299

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 11/175 (6%)

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGKKFIQLAEE----Q 303
            +  Y+   E++  PE   V  ++       ++ + ++  Q LK G  F QLA+E    +
Sbjct: 126 ARNIYKAKPERFKVPEQVQVRHILIAGKGADSRAQIEKIEQELKGGADFAQLAKERSADK 185

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           G +     LG F    +       + F+L K G+ + ++   FGY I  +       T S
Sbjct: 186 GSAAKGGDLGFFEAGKMV-PEFDKAAFALTKPGELSGIVESKFGYHILQLEGRHAPRTRS 244

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRREKIVSIDLPL 417
           F EV+ ++  ++R     E    D + ++ E      +++  +       +    
Sbjct: 245 FDEVRSELMQEVRANVQQEARVADAQAMQKEAKINKEAIEAFAAGYNPQPVKTAP 299



 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 10/181 (5%)

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           +   KP      ++V   + + +   K ++  +   +++E+ L  G    ++++      
Sbjct: 129 IYKAKPERFKVPEQV--QVRHILIAGKGADS-RAQIEKIEQELKGGADFAQLAKERSADK 185

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
                    G    GK V       +     F    P      V    G Y  +Q++   
Sbjct: 186 GSAAKGGDLGFFEAGKMV------PEFDKAAFALTKPGELSGIVESKFG-YHILQLEGRH 238

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
             R R  +EV +++ ++ +     E   + A  +  E     +             + T 
Sbjct: 239 APRTRSFDEVRSELMQEVRANVQQEARVADAQAMQKEAKINKEAIEAFAAGYNPQPVKTA 298

Query: 533 Q 533
            
Sbjct: 299 P 299


>gi|159046106|ref|YP_001534900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dinoroseobacter
           shibae DFL 12]
 gi|157913866|gb|ABV95299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dinoroseobacter
           shibae DFL 12]
          Length = 280

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 64/168 (38%), Gaps = 5/168 (2%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E +R + +   + +   +  ++ + +QA Y+         +      ++   ++EA    
Sbjct: 95  ESQRWALMANSIIDGAIEAAVTEESVQALYDAEFGNIEPEKEFNASHILVETEEEAQALV 154

Query: 288 QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             L+ G  F +LA  +       +   LG F    +       ++  + + G  +  +  
Sbjct: 155 TELEGGADFAELARARSVGPSGPNGGELGWFGPGMMV-APFEMAVIRM-EPGTVSEPVET 212

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            FG+ +  +++I+ S     +EV+  +  ++    A E V       E
Sbjct: 213 QFGWHVIRLNDIRDSAAQPLEEVRGRLEERLSEEAAQEVVDSLVAATE 260



 Score = 38.4 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 9/113 (7%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           +E+ + L   L  G    E++R   +        +       G  +   P++  ++    
Sbjct: 147 EEEAQALVTELEGGADFAELARARSVGPSGPNGGELGWF---GPGMMVAPFEMAVI---- 199

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
            + +P +    V    G +  +++ +   +  + LEEV   +++        E
Sbjct: 200 -RMEPGTVSEPVETQFG-WHVIRLNDIRDSAAQPLEEVRGRLEERLSEEAAQE 250


>gi|260576192|ref|ZP_05844185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sp. SW2]
 gi|259021672|gb|EEW24975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sp. SW2]
          Length = 285

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 60/148 (40%), Gaps = 5/148 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---EEQ 303
            ++++ LQA Y+                ++  ++++A      +  G  F +LA      
Sbjct: 118 AVTDESLQAAYDAKYAHAEPTTEYHAAHILVDSEEKAKALKTQIDGGADFAELAIANSSD 177

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           G + +   LG F    +      D++ +L K G+ +  I   FG+ +  ++  + +   +
Sbjct: 178 GSAANGGDLGWFGLGMMVKP-FEDAVVAL-KPGEVSAPIQTQFGWHLVKLTETRVANAPA 235

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391
             +V+ ++A ++     +  +++     
Sbjct: 236 LDDVRDELAGEIEQAALTAHIEKLTAAA 263


>gi|228939473|ref|ZP_04102061.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972327|ref|ZP_04132938.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978940|ref|ZP_04139306.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407]
 gi|228780814|gb|EEM29026.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407]
 gi|228787344|gb|EEM35312.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820173|gb|EEM66210.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 293

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 65  YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 125 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 175

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 176 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 234

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F EVK+ I   +   +  +   +  +++   L     +   ++  K  
Sbjct: 235 E--LKPFDEVKEKIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286



 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 54  ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 140

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 141 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 200

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      D   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 201 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKEKIRKDL 250

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V +  K+
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273



 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 155 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E K+K    L Q   +D        V+  L    
Sbjct: 215 VSDPVKTTYGYHIIKVTDKKELKPFDEVKEKIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 274

Query: 615 SVTVHDN 621
            + V++ 
Sbjct: 275 DIKVNNK 281


>gi|325265502|ref|ZP_08132223.1| PPIC-type PPIASE domain protein [Clostridium sp. D5]
 gi|324029250|gb|EGB90544.1| PPIC-type PPIASE domain protein [Clostridium sp. D5]
          Length = 246

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KK 295
             + E  K I +S+DE  A YE NK+++   E+ + + ++  ++++     +S+  G K 
Sbjct: 83  MAMEEIMKDITVSDDEASAYYEANKQQFSKGEMVSAKHILTDSEEKCSAVLESITNGDKS 142

Query: 296 FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F   A E      S +   LG F +  +      D+ F+ A+ G     +   FGY +  
Sbjct: 143 FEDAARESSMCPSSENGGDLGKFGRGQMVK-EFEDAAFA-AEPGHVVGPVQSQFGYHLIK 200

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           V   + + T    EV + I   M     S    E  K L++ 
Sbjct: 201 VEEKEEAATAPLNEVIESIKMNMLQQMQSSAYSEMIKELKDK 242


>gi|187917986|ref|YP_001883549.1| basic membrane protein [Borrelia hermsii DAH]
 gi|119860834|gb|AAX16629.1| basic membrane protein [Borrelia hermsii DAH]
          Length = 344

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/408 (13%), Positives = 131/408 (32%), Gaps = 79/408 (19%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70
            K+  +  F+ FL++ +         +  V+ +     + +  + F +     +  + + 
Sbjct: 4   IKVIFMGNFLCFLLFFIVGITSFAQNTPVVI-INLHSNEIITKTEFDSK----VNTLKKT 58

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
            G  +++         K++L  L++     Q     G++     V   I           
Sbjct: 59  QGRDLSNAE------RKQVLQILIADVLFGQEALKQGIKVGDEEVMQTIRA----QFGLA 108

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
             + +     +  +G N  E +    + LS   ++                         
Sbjct: 109 SLTDEQIRQMIESQGTNWNELLSSMKRSLSAQKLI------------------------- 143

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
               + +       I  PS   + +++E  K  +  P+  RIS++ F   +K++   ++ 
Sbjct: 144 ----LKMAQPKFSEIKTPSEKEVIEYYEANKTKFVNPDISRISHVFFSSKDKKRSEILTK 199

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
            +  A   K+K+  F   +R                           + ++ +   L  +
Sbjct: 200 AKDIANQIKSKKITFEEAVRKYSN----------------------DEGSKAKNGDLGFL 237

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366
           + G  + + +  +     +F +  KGD +  I    G+ I  V+ +     +  Q+    
Sbjct: 238 ARGDQNAQNVLGLDFIKEVF-MLNKGDISQPISSKEGFHIVKVTEMYSQRFLGLQDKISP 296

Query: 367 -----VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                VK  I N M      + V    + + + L    S+  +    K
Sbjct: 297 NVNMTVKDAIKNNMVNIHQQQIVARVQQEIYDKLNKSASIQILDSSLK 344


>gi|152993388|ref|YP_001359109.1| peptidyl-prolyl cis-trans isomerase [Sulfurovum sp. NBC37-1]
 gi|151425249|dbj|BAF72752.1| peptidyl-prolyl cis-trans isomerase [Sulfurovum sp. NBC37-1]
          Length = 282

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 22/241 (9%)

Query: 163 DVVGMFVGGMRPSN--LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
                FV    P+     LD A++     R ++ ++          + ++    +  EK 
Sbjct: 36  QDAEAFVSATAPNAHFSQLDPAQKNMITQRLIEKVLFMELAKKEGIE-NDPEFKKALEKI 94

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           KD            +   + ++   I IS+ E +  YEKNK+K+   E+     ++  ++
Sbjct: 95  KDELA---------VNLWMKKQLDSIVISDSEAKDFYEKNKDKFIQKEMVQARHILVKDE 145

Query: 281 KEADEAFQSLK--KGK----KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFS 331
           K A E  + LK  KG+    KFI+LA+ +     +     LG F+K  +     + +++ 
Sbjct: 146 KTAKEIIKELKPLKGEALKKKFIELAKSKSIGPSAPKGGELGKFAKGQMV-PEFSKAVWK 204

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           L K       +   FGY I  + +   + TV + +VK  I   ++  + ++KV    K L
Sbjct: 205 LEKDQITLEPVKTQFGYHIILLEDKIEAQTVPYDKVKDQIIASLKQQEFAKKVAAIAKEL 264

Query: 392 E 392
           +
Sbjct: 265 K 265


>gi|126463590|ref|YP_001044704.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126105254|gb|ABN77932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 284

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 5/149 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++++ LQA Y+                ++  ++ EA +  + +  G  F  LA+E    
Sbjct: 118 AVTDEALQAAYDARFADAAPQTEYNASHILVSSEDEAKKLKEEIDGGADFAVLAKEHSSD 177

Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               +  SLG F    +      D++  + K G+    I   FG+ +  ++  + +   S
Sbjct: 178 GAAANGGSLGWFGLGMMVKP-FEDAVVKM-KPGEVVGPIQTQFGWHLVKLNETRIAEKPS 235

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
             +++ ++A Q+     +  + E   + E
Sbjct: 236 LDDMRDELAGQIEQEAVARHIDEVTAKAE 264


>gi|228913728|ref|ZP_04077354.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228845920|gb|EEM90945.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 287

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 78/192 (40%), Gaps = 28/192 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + +++ K  Y               E  + S       EK  +  I++ EL+
Sbjct: 67  KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTSVRAQLAQEKAIEKTITDKELK 126

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA++  +         
Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +      D+ + L KK + +  +   FGY I  V++IK     SF++ K D
Sbjct: 178 DLGFFGAGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234

Query: 371 IANQMRITKASE 382
           I  ++   KA +
Sbjct: 235 IKKEIVQKKAQD 246


>gi|228908084|ref|ZP_04071932.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200]
 gi|228851502|gb|EEM96308.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200]
          Length = 293

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 65  YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  +++ +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 125 EKAIKATVTDKDVKDNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 176 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQLSEPVKTTYGYHIIKVTDKK 234

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F EVK  I   +   +  +   +  +++   L     +   ++  K  
Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286



 Score = 43.1 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 90/263 (34%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 54  ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKDN 140

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 200

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                 ++     +  D     +         Y  +++ +      +  +EV   ++KD 
Sbjct: 201 ------KEFEEAAYKLDAGQLSEPVKTTY--GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V +  K+
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273



 Score = 38.4 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + + E    G++F  + K       +  Q   +             +         
Sbjct: 155 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KDK    + Q   +D        V+  L    
Sbjct: 215 LSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274

Query: 615 SVTVHDN 621
            + V++ 
Sbjct: 275 DIKVNNK 281


>gi|49185187|ref|YP_028439.1| peptidylprolyl isomerase [Bacillus anthracis str. Sterne]
 gi|49479990|ref|YP_036442.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|165870489|ref|ZP_02215143.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0488]
 gi|167633046|ref|ZP_02391372.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0442]
 gi|167639670|ref|ZP_02397940.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0193]
 gi|170687085|ref|ZP_02878304.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0465]
 gi|170706725|ref|ZP_02897184.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0389]
 gi|177649682|ref|ZP_02932684.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0174]
 gi|190565511|ref|ZP_03018431.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis Tsiankovskii-I]
 gi|196040038|ref|ZP_03107341.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus NVH0597-99]
 gi|218903473|ref|YP_002451307.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH820]
 gi|227814851|ref|YP_002814860.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. CDC 684]
 gi|229604551|ref|YP_002866676.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0248]
 gi|254684916|ref|ZP_05148776.1| peptidylprolyl isomerase [Bacillus anthracis str. CNEVA-9066]
 gi|254722324|ref|ZP_05184112.1| peptidylprolyl isomerase [Bacillus anthracis str. A1055]
 gi|254737363|ref|ZP_05195067.1| peptidylprolyl isomerase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743452|ref|ZP_05201137.1| peptidylprolyl isomerase [Bacillus anthracis str. Kruger B]
 gi|254751679|ref|ZP_05203716.1| peptidylprolyl isomerase [Bacillus anthracis str. Vollum]
 gi|254760198|ref|ZP_05212222.1| peptidylprolyl isomerase [Bacillus anthracis str. Australia 94]
 gi|301053856|ref|YP_003792067.1| peptidylprolyl isomerase [Bacillus anthracis CI]
 gi|46396831|sp|Q81QT1|PRSA3_BACAN RecName: Full=Foldase protein prsA 3; Flags: Precursor
 gi|49179114|gb|AAT54490.1| protein export protein prsA [Bacillus anthracis str. Sterne]
 gi|49331546|gb|AAT62192.1| protein export protein prsA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|164713644|gb|EDR19167.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0488]
 gi|167512379|gb|EDR87755.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0193]
 gi|167531858|gb|EDR94523.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0442]
 gi|170128456|gb|EDS97324.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0389]
 gi|170669136|gb|EDT19880.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0465]
 gi|172084756|gb|EDT69814.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0174]
 gi|190563538|gb|EDV17503.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis Tsiankovskii-I]
 gi|196029297|gb|EDX67901.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus NVH0597-99]
 gi|218538215|gb|ACK90613.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH820]
 gi|227007172|gb|ACP16915.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. CDC 684]
 gi|229268959|gb|ACQ50596.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0248]
 gi|300376025|gb|ADK04929.1| peptidylprolyl isomerase [Bacillus cereus biovar anthracis str. CI]
          Length = 283

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246
           Y ++ ++ +      S+    +  E+ KD    N++   E   +        + + +I  
Sbjct: 55  YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 114

Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 166 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 274



 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 126 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 185

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 235

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V E  K+
Sbjct: 236 IRKDIEQQRLQDTTGKWKQQVVNELLKD 263



 Score = 38.4 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 204

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 264

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 265 DIKVNDK 271


>gi|330814031|ref|YP_004358270.1| hypothetical SurA-like protein [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487126|gb|AEA81531.1| hypothetical SurA-like protein [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 462

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/387 (17%), Positives = 146/387 (37%), Gaps = 51/387 (13%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
            +V++   F  WG+ D +FS   ++ V  V  + +    ++N  +  L   + +     N
Sbjct: 2   LIVIIIAVFASWGVGD-MFSAGKTNVVAEVSGKNIYSEDYVNELRNGLQTKNYQ-----N 55

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
              A    L  +IL+ LV+    + + E+  +  +   +   I   P F  K+ KFS   
Sbjct: 56  VSDAIKDNLHIQILNQLVAEKIFEIYAEEEKIIINDKTLSNFIKDIPEF-SKNEKFSRTE 114

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           +   L +  I+   +   + K L +  +V         ++    + K ++ +  S+ Y  
Sbjct: 115 YEKYLLKNQISSFSFETSFKKNLLKKLIVESQNLDSISTSYHTTRVKDYFEKKISISY-- 172

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
           +N   +    D +   +  + +K K +Y   E + I Y + + +++  +           
Sbjct: 173 INLEDLYEDVDITEKEILDYHKK-KPSYSN-ELRSIKYAVINQNKEANQSS-------DL 223

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
           + KN           +E +V  N+               F  +A +   ++    L  F+
Sbjct: 224 FFKNIS--------DIENMVLSNR--------------TFDDIATQFSLNIKKSDL--FN 259

Query: 317 KEYIPDVSLADSIFSLA--------KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF-QEV 367
           K+ +   SL  + F  +             + +I     + +  ++ I     +    EV
Sbjct: 260 KDGVIKNSLKATAFDRSIIQKSFYLNDQITSELIEVKGSFYLIGINEIVKKKPLILNDEV 319

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEF 394
           KK+I N+++ T  + K      +++E 
Sbjct: 320 KKNIINKIKKTNINSKANFLINKIKEQ 346



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 108/276 (39%), Gaps = 11/276 (3%)

Query: 355 NIKPSFTVSFQEVK-KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
             KPS++   + +K   I       ++S+   ++   +E  +    + D+I+ +  +   
Sbjct: 194 KKKPSYSNELRSIKYAVINQNKEANQSSDLFFKNISDIENMVLSNRTFDDIATQFSLNIK 253

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
              L +  G  V    + A  +   ++ + F  +D ++ +       GS+  + I E + 
Sbjct: 254 KSDLFNKDG--VIKNSLKATAFDRSIIQKSFYLNDQITSELIEV--KGSFYLIGINEIVK 309

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
            +   L     +VKK+         ++SKAN  ++   KE   F  +      ++   + 
Sbjct: 310 KKPLILN---DEVKKNIINKIKKTNINSKAN-FLINKIKEQNLFDQLISKKKKTVKQLDL 365

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF-IS 592
            NR++ +NK F  + I Q+F+     +                +  +     E DK    
Sbjct: 366 KNRLE-KNKTFSPNQIQQIFNLKKNELLVVKGPKNYLIKAIDTSYDRTKSNDEMDKLYER 424

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
            +    ++ ++ S   +L ++Y V ++  ++ R  +
Sbjct: 425 QVAMNFDEQIMQSFDKFLNNKYKVKINQKVLDRITN 460


>gi|228985422|ref|ZP_04145581.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228774375|gb|EEM22782.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 288

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 60  YQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNEDELKEKMKPEIAF 119

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  E   +  +++   L     +    +  K
Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQETTGKWKQQVVNELLKDADIKVNDKEFK 279



 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 49  ELRQKYGESTLYQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNED- 107

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 108 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 135

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 136 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTV 195

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      +   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 196 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDSIRKDI 245

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  E       Q+V E  K+
Sbjct: 246 EQQRLQETTGKWKQQVVNELLKD 268



 Score = 37.7 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   ++        V+  L    
Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQETTGKWKQQVVNELLKDA 269

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 270 DIKVNDK 276


>gi|304440474|ref|ZP_07400362.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371040|gb|EFM24658.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 370

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 123/360 (34%), Gaps = 85/360 (23%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
            +      +V    +P  +F   +  +   I    G     E    +G +   +D  +  
Sbjct: 24  GNKPGVAATVNGVDIPVETFNEEYAAQRNSIVLTSGEDYLKE---KLGKEDMTIDQGIRE 80

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             L+  ++ + L                    D K   +   + + + G +++++ +   
Sbjct: 81  FVLNNLVQ-MELVRQDAEKKDI--------KVDEKKVDEQINAIIEQSG-SKEKFEEQLK 130

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
           +                      D   +                            L + 
Sbjct: 131 EQ-------------GITEKFFRDYLAK--------------------------QELVKE 151

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           ++ +                      +++++IS ++ +A YEK+K+KYF  +    + ++
Sbjct: 152 YQDH---------------------LKEELKISEEDAKAIYEKDKDKYFVAD---ADHIL 187

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSL 332
              + EA    + +++GK F +LA+E+ K      +   LG FS   +      D++  +
Sbjct: 188 VETEDEAKSIKKEIEEGKDFNELAKEKSKDPTAKDNGGKLGEFSTGQMVK-EFEDAVVKM 246

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            K+G+ +  +   FGY +  +++++      F EVK  I       K +E + +  K  +
Sbjct: 247 -KEGEISDPVKTQFGYHLIKLNSLR---HKEFDEVKDQIIETGTSEKLTEYLNKLEKDAK 302


>gi|196043445|ref|ZP_03110683.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB108]
 gi|225864299|ref|YP_002749677.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB102]
 gi|196025754|gb|EDX64423.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB108]
 gi|225788486|gb|ACO28703.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB102]
          Length = 283

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246
           Y ++ ++ +      S+    +  E+ KD    N++   E   +        + + +I  
Sbjct: 55  YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 114

Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 166 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 274



 Score = 40.4 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 126 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 185

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 235

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V E  K+
Sbjct: 236 IRKDIEQQRLQDTTGKWKQQVVNELLKD 263



 Score = 38.4 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 204

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 264

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 265 DIKVNDK 271


>gi|229139028|ref|ZP_04267605.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST26]
 gi|228644383|gb|EEL00638.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST26]
          Length = 288

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 60  YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQLGLKNEDELKEKMKPEIAF 119

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 171 KQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 279



 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 131 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFA 190

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 191 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 240

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V E  K+
Sbjct: 241 IRKDIEQQRLQDTTGKWKQQVVNELLKD 268



 Score = 38.4 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKLDAGQ 209

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 269

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 270 DIKVNDK 276


>gi|332519007|ref|ZP_08395474.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044855|gb|EGI81048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
           5H-3-7-4]
          Length = 711

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 94/656 (14%), Positives = 204/656 (31%), Gaps = 92/656 (14%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLI---WGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
           L  IR+  +T V  + + +    F++   +   DALF+ S  + V ++  + +   +F+ 
Sbjct: 4   LNKIRQ--KTVVLILVIALALFAFILSSLFDNKDALFNKS-PNVVATINGKDISREAFMA 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
             + +            N+  A    +  ++ +  V  A +    + +GL     ++   
Sbjct: 61  RVEAQ------------NNPNATQTQIMNQVYNAEVREAVMQSQFDKLGLTVGREQMRDL 108

Query: 119 ----IARSPLFHGKDNKFSHDVFVSRLAREGINEK-------EYIDHYTKMLSRTDVVGM 167
               +A SP F   D  F  +V  + +A               Y +  +    + + + M
Sbjct: 109 LKTNLASSPQFFNADGIFDENVLNNYIANLKETSPVAYRQWINYENQVSSGALQQNYINM 168

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRA 226
                  +      + +   +   + Y+ +    +       S + +  + ++ K  Y  
Sbjct: 169 VKAATTATLAEGALSHKLEGDKVDIKYVYVPFTTIADSTVTVSKSEINAYIKENKTKYDV 228

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
              + + Y+ F+     +       EL     +N+E+Y              NQ  A  A
Sbjct: 229 EASRNLQYVKFEEVASVEDENAIQGELIKLI-QNREEYVDG----------KNQMVAGFA 277

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             +++  + ++    +      D       K  +P  +L DSI +L   G+         
Sbjct: 278 EMNVENAEAYVNANSDAEIKYQDK---FVYKSSLP-RALQDSISNL-NVGNVYGPYKDGQ 332

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDI-------------ANQMRITKASEKVKEDYKRLEE 393
            + I  +   +        ++   I             A     TK  E+ K     + +
Sbjct: 333 TFKITKLLEKR--------QLADSIQSSHILIPFVGSQAATAETTKTKEEAKATADSIFK 384

Query: 394 FLALGTS-MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
            +    +   E++                   +       + +       +F  D     
Sbjct: 385 LVKNNKTKYAEVANEINTDGSKGKDGSIGWTRL--TTYNPLGFDPDFANFLFFNDKG--- 439

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
              V L    Y  ++I +          +V T  +K   +VKT +++   A+   +    
Sbjct: 440 SIDVVLTKFGYHIIRIDDKK--NVDTAYKVATIERKIEPSVKTEDDIFRNASNFEVAL-- 495

Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLS 570
           +GK+F D+ K     +     +  +D      G     +   F    ++      E    
Sbjct: 496 DGKDFLDVAKENNLKVNPVTSVKELDENIPGVGAERPIVRWAFEEDTKVGNTKRFETKDG 555

Query: 571 YVVFKVTN-------------SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
           YV+ +VT                  P   K K    +   +N   L+   A    Q
Sbjct: 556 YVIVQVTAKNEAGLMNVEDASVTALPEIRKQKKAKMIKDRVNATTLEDFAAAENQQ 611



 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 76/214 (35%), Gaps = 25/214 (11%)

Query: 271 TVEQLVFPNQKEADEAFQSLKK------GKKFIQLAEEQGKSLSDI----SLGSFSKEYI 320
           T+E+ + P+ K  D+ F++         GK F+ +A+E    ++ +     L        
Sbjct: 469 TIERKIEPSVKTEDDIFRNASNFEVALDGKDFLDVAKENNLKVNPVTSVKELDENIPGVG 528

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
            +  +    F    K   T       GYVI  V+    +  ++ ++       ++R  K 
Sbjct: 529 AERPIVRWAFEEDTKVGNTKRFETKDGYVIVQVTAKNEAGLMNVEDASVTALPEIRKQKK 588

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
           ++ +K+            T++++ +  E         ++     V G  +  I     ++
Sbjct: 589 AKMIKDRVNA--------TTLEDFAAAENQQVRTALAINMKNPTVSGVGLEPI-----VV 635

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
              FG ++  +    +         VQ  +  PA
Sbjct: 636 GHAFGLNEGETSG--LIAGTKGVFMVQPTKKTPA 667


>gi|307571805|emb|CAR84984.1| protein export peptidyl-prolyl isomerase protein [Listeria
           monocytogenes L99]
          Length = 279

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 30/213 (14%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247
           +      S+  + + F +YK  Y                    ++ Y L      E   +
Sbjct: 48  LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 107

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  YE      + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     
Sbjct: 108 TSDKVLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 161

Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G     + P   D +   + ++L  KGD +  +   +GY I  +   KP+   +F
Sbjct: 162 ATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 219

Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLE 392
           ++ KK +       Q+      + +K++YK   
Sbjct: 220 EKDKKAVKASYLESQLTTENMQKTLKKEYKDAN 252


>gi|295702743|ref|YP_003595818.1| foldase protein PrsA [Bacillus megaterium DSM 319]
 gi|294800402|gb|ADF37468.1| foldase protein PrsA [Bacillus megaterium DSM 319]
          Length = 307

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 21/218 (9%)

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKY--------KDNYRAPEYKRISYILFDVHE 241
           RSV    + ++         +  L    E+Y        K          +   +     
Sbjct: 67  RSVTEEKVLSKKYKVTDKELDQQLNILREQYGDQVDSVIKQKGEKEVKDMLKVDILREKA 126

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
               I++S+ EL+  Y++ K             ++  ++K A+E    +KKG+ F  LA+
Sbjct: 127 ATAGIKVSDKELKKAYDEYKA---QKPQIRASHILVKDEKTANEVEAKIKKGEDFASLAK 183

Query: 302 EQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           E         +   LG F +  +      ++ + L KKG+ +  I   +GY I  + + K
Sbjct: 184 EYSTDQQSAANGGDLGYFGEGQMVK-EFEEAAYKL-KKGEVSKPIKTEYGYHIIKLVDKK 241

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
                SF++ K ++  Q++ +K  +   E  K++++ L
Sbjct: 242 --KVESFEKKKPELEQQIKRSKVDQ--AEANKKIQKEL 275


>gi|194014491|ref|ZP_03053108.1| foldase protein PrsA [Bacillus pumilus ATCC 7061]
 gi|194013517|gb|EDW23082.1| foldase protein PrsA [Bacillus pumilus ATCC 7061]
          Length = 294

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 18/229 (7%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            +++ ++            L L   ++   +   V    ++ +            L Q  
Sbjct: 35  DVTKEELYTTLKKQAGGDALNLLVQQKVLADKYKVSDKEIDKKMEEYKKTLGEDRLKQLQ 94

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +++  +Y      ++ Y L      +  I+I++ E++A Y+  K K           ++ 
Sbjct: 95  DEFGKDYI---KDQVKYELLTQKAAKANIKITDKEVKAYYDDLKGKI------RASHILV 145

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLA 333
            ++K ADE  + L KG+K+  +  E     +       +G F+KE   D + + + F L 
Sbjct: 146 ADKKTADEVEKKLDKGEKWDAVVSEYSTDTASAAQGGDVGWFAKEGQMDENFSKAAFKL- 204

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           K  + +  +   FGY I   +  +      + ++K D+  ++   K ++
Sbjct: 205 KVNEISKPVKSQFGYHIIKKTEERGK----YDDMKADLKKELLNQKQAD 249


>gi|260654336|ref|ZP_05859826.1| peptidyl-prolyl cis-trans isomerase family protein [Jonquetella
           anthropi E3_33 E1]
 gi|260630969|gb|EEX49163.1| peptidyl-prolyl cis-trans isomerase family protein [Jonquetella
           anthropi E3_33 E1]
          Length = 318

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 17/164 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---------DEAFQSLKKGKK-- 295
            IS+ E++  Y+ +++ +F PE      ++    K A         D+A   +KK K   
Sbjct: 121 NISDAEIKQYYDAHQDSFFVPESIRASHILISVPKGASDKEVAEAKDKAMDIIKKIKSGS 180

Query: 296 --FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F + A++     S      LG FSK  +   +   + F+L      +  +   FG+ I
Sbjct: 181 LEFSKAAQDMSSCPSKVQGGDLGFFSKGQMV-PAFEKAAFALKPGEMTSEPVRTDFGFHI 239

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
             V++  P+ T+   +VK  I + +         ++    L + 
Sbjct: 240 IKVTDAHPAKTMPLDDVKASIKSTLSSQAKLAAFQKAIAELRQK 283



 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 4/136 (2%)

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
           + K   E   KA  ++ +       F    +++ +        +                
Sbjct: 158 SDKEVAEAKDKAMDIIKKIKSGSLEFSKAAQDMSSCPSKVQGGDLGFFSKGQMVPAFEKA 217

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVI 607
            F+     +   P+     + + KVT++        D   + +   ++           I
Sbjct: 218 AFALKPGEMTSEPVRTDFGFHIIKVTDAHPAKTMPLDDVKASIKSTLSSQAKLAAFQKAI 277

Query: 608 AYLKSQYSVTVHDNLI 623
           A L+ +Y V + D  +
Sbjct: 278 AELRQKYPVEILDESL 293


>gi|182680158|ref|YP_001834304.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182636041|gb|ACB96815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 299

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 61/148 (41%), Gaps = 4/148 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++ + L+  Y++  +     +      ++     +A    + LK G+ F ++A+E  K 
Sbjct: 127 AVTEEALKTAYDEAAKAQKPEQEIHARHILVATDDDAKAVLKRLKAGEDFAKVAKEVSKD 186

Query: 307 LS--DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            S     LG F+K+ +     AD+ F L +    +  +   FG+ I  V   +      +
Sbjct: 187 PSADGGDLGWFTKDRMV-PEFADAAFKLDEN-QLSEPVKSQFGWHIIQVLGKRQKTFPPY 244

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLE 392
            +V++ +A  +      E V +  K  +
Sbjct: 245 DQVREQVARFVIQRAQGELVAQLRKAAK 272


>gi|65319635|ref|ZP_00392594.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Bacillus
           anthracis str. A2012]
          Length = 283

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246
           Y ++ ++ +      S+    +  E+ KD    N++   E   +        + + +I  
Sbjct: 55  YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 114

Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 166 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 274



 Score = 40.4 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 126 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 185

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 235

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V E  K+
Sbjct: 236 IRKDIEQQRLQDTTGKWKQQVVNELLKD 263



 Score = 38.4 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 204

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 264

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 265 DIKVNDK 271


>gi|312878320|ref|ZP_07738236.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311794903|gb|EFR11316.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 343

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/399 (15%), Positives = 131/399 (32%), Gaps = 101/399 (25%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
             V  I  +++ + F+           S   TV+ +  +K+    F+  +        + 
Sbjct: 17  GVVGFIVAILVAMFFVF---------SSSLQTVLEINNEKINKKEFLMRYNILKQNAIEM 67

Query: 71  IGFV--VNSE---RARSVGLDKKILDNLVSGATLDQFIEDIGLEAD---HGRVWGEIARS 122
                 ++ E         L  K+++ L++     Q  +  G++        V   I   
Sbjct: 68  SNRPDILDIEYSGMKYKDWLKNKVIELLITETLCLQEAKKRGMKLTFAEEQEVNNYINNI 127

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
                K++K++ ++F   L +   NE+ +     K L R  ++                 
Sbjct: 128 -----KNDKYAREMFYEYLKKIKSNEELF----KKQLLRERLIDKLY------------- 165

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
                            + +          + Q++E  K+ YR                 
Sbjct: 166 -----------------KEITKNVTLKEQEMKQYYENNKNEYRM---------------- 192

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
              +++ +  L+ E E+ K                  +K A++    +K G     LA++
Sbjct: 193 ---VKVVDIFLRVENEQQKA---------------EKEKLANQLMAKIKNGGSIFDLAQK 234

Query: 303 QGK-SLSDISLGSF------SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
             + +  +   G         KE        + +F+L KKG+ + +I    GY IA + +
Sbjct: 235 YSEITTKNGQKGVIDYFRKGEKESEFGSVFEEKVFNL-KKGEISEIIQTLNGYHIAQIID 293

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            K +    ++ VK +I   ++  K  +  +E    L + 
Sbjct: 294 EKFA---PYESVKGEIEQSLKKQKKDKVFQEYLNELRKK 329



 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN------RMDNENK 542
             +  +   E    ANQL+ +  K G +  D+ +     + T N         R   +  
Sbjct: 201 RVENEQQKAEKEKLANQLMAKI-KNGGSIFDLAQKYS-EITTKNGQKGVIDYFRKGEKES 258

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-KFISYLTQMMNKD 601
            FG     +VF+     +    I+    Y + ++ + K  P +    +    L +     
Sbjct: 259 EFGSVFEEKVFNLKKGEISEI-IQTLNGYHIAQIIDEKFAPYESVKGEIEQSLKKQKKDK 317

Query: 602 LLDSVIAYLKSQYSVT 617
           +    +  L+ +  + 
Sbjct: 318 VFQEYLNELRKKSVIK 333


>gi|58040109|ref|YP_192073.1| peptidyl-prolyl cis-trans isomerase precursor [Gluconobacter
           oxydans 621H]
 gi|58002523|gb|AAW61417.1| Peptidyl-prolyl cis-trans isomerase precursor [Gluconobacter
           oxydans 621H]
          Length = 308

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 60/150 (40%), Gaps = 6/150 (4%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS- 306
           +++  +   Y+ +       E      ++  ++ +A +    L KG  F +LA +  K  
Sbjct: 137 VTDSAMHDFYQSHYANKKPEEEIHARHILVDSEAQAKDIIAQLGKGADFGKLAAQLSKDK 196

Query: 307 ----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                +   LG F KE +   + + + F++         +H  +G+ +  V   + +   
Sbjct: 197 GSAGANGGDLGWFKKEDML-PAFSAAAFAMKPNTISQTPVHTQYGWHVIQVLATRTAPIP 255

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +F +V   +  ++   K  + V+    +++
Sbjct: 256 TFDQVHDQVRQELIRDKVRDIVQAAESQVK 285


>gi|197124851|ref|YP_002136802.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
 gi|196174700|gb|ACG75673.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
          Length = 336

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 97/346 (28%), Gaps = 71/346 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V                +  +      ++AR+  L +   D +VS    
Sbjct: 35  DRVAAIVNGDVVTLQELEQRAAALGLAAADALPAGPARDKARADALRR-AFDQVVSDKLF 93

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            +  +++ +E    +V   I        K N F+     S LA EG +  +Y        
Sbjct: 94  AEKAKELEIEVTEKQVDDAIEGV----KKQNGFTDAQLESALASEGYSMTDYRARIR--- 146

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                                         R +    L    V      S   L  +++ 
Sbjct: 147 ------------------------------RELQNFSLLQYKVAGKIKTSEEDLRNYYQS 176

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +   +   +  R+ +I     E                                      
Sbjct: 177 HPQEFDGEDEVRVRHIFIPFAEGGGAQA----------------------------EAQA 208

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           + E     Q LK G+ F  +A+       +     LG   +  I   +L D+ F+L K G
Sbjct: 209 RAEGQRVLQRLKTGEDFGAVAKAVSRGPSAEEGGELGWLKRGTI-HRTLEDAAFAL-KTG 266

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           + + ++    G  I  V   +     SF++ + +I  ++   +A  
Sbjct: 267 EMSGLVEAGPGVHILKVEERRRGGGKSFEQARDEIRQRLGEEQAEN 312


>gi|228919876|ref|ZP_04083232.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839777|gb|EEM85062.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 286

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 42/248 (16%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I ++E+ D       +  +  M +  +          K +  E++ VD            
Sbjct: 35  ITKEEFYDQMKTQAGKQVLNNMVMEKVL--------IKNYKVEDKDVDKKF--------- 77

Query: 206 ADPSNAVLTQWFEKY----KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
               + +  Q+ +++    K      E  +         EK  +  I++ EL+  Y+   
Sbjct: 78  ----DEMKKQYGDQFDTLLKQQGIKEETIKTGVRAQLAQEKAIEKTITDKELKENYK--- 130

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317
                PEI+    ++  ++  A +  + L +GK F +LA++  +          LG F+ 
Sbjct: 131 -----PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGYFTA 184

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             +      D+ + L KK + +  +   FGY I  V++IK      F EVK DI   +  
Sbjct: 185 GKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKE--QKPFDEVKGDIKKDLVQ 240

Query: 378 TKASEKVK 385
            KA +   
Sbjct: 241 KKAQDAAF 248



 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 10/141 (7%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             T++ +E+K++   +++ +    K +   K+++E L  G S +E++++    +      
Sbjct: 117 EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G    GK V         L +    +   S+          Y  +++ +      + 
Sbjct: 177 GDLGYFTAGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKE--QKP 226

Query: 479 LEEVLTDVKKDWKTVKTAEEV 499
            +EV  D+KKD    K  +  
Sbjct: 227 FDEVKGDIKKDLVQKKAQDAA 247


>gi|289208891|ref|YP_003460957.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           K90mix]
 gi|288944522|gb|ADC72221.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           K90mix]
          Length = 289

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 6/159 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
             +    +++EIS ++++AEYE+  E     E R    ++  ++  A E    L  G  F
Sbjct: 123 MLMERIAEELEISEEDVEAEYERQVEYLRGTEYR-ARHILVEDEDSARELLAQLDDGADF 181

Query: 297 IQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            +LAEE     G +     LG F+ + +     A +  +L         +   FG+ +  
Sbjct: 182 AELAEEHSIDPGSAARGGDLGWFTPDGMV-PEFAAATEALEPGETTDAPVQSQFGWHLIR 240

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + + +        EV+ +I   +      EK++      
Sbjct: 241 LDDTREVEVPPLDEVRAEIIEILESRAIQEKLEALRAEA 279



 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 15/166 (9%)

Query: 353 VSNIKPSFTVSFQEVKKDIANQM-----RITKASEKVKEDYKRLEEFLA---LGTSMDEI 404
           +  I     +S ++V+ +   Q+        +A   + ED     E LA    G    E+
Sbjct: 125 MERIAEELEISEEDVEAEYERQVEYLRGTEYRARHILVEDEDSARELLAQLDDGADFAEL 184

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           +    I           G       V       + L      D P+            + 
Sbjct: 185 AEEHSIDPGSAARGGDLGWFTPDGMVPEFAAATEALEPGETTDAPVQSQF-------GWH 237

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
            +++ ++       L+EV  ++ +  ++    E++ +   +  +E 
Sbjct: 238 LIRLDDTREVEVPPLDEVRAEIIEILESRAIQEKLEALRAEATIEI 283


>gi|30019198|ref|NP_830829.1| peptidylprolyl isomerase [Bacillus cereus ATCC 14579]
 gi|218233989|ref|YP_002365810.1| peptidylprolyl isomerase [Bacillus cereus B4264]
 gi|229042892|ref|ZP_04190626.1| Foldase protein prsA 1 [Bacillus cereus AH676]
 gi|229126454|ref|ZP_04255469.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4]
 gi|229143755|ref|ZP_04272176.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24]
 gi|229149355|ref|ZP_04277591.1| Foldase protein prsA 1 [Bacillus cereus m1550]
 gi|296501758|ref|YP_003663458.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
 gi|46396827|sp|Q81GY5|PRSA1_BACCR RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|29894741|gb|AAP08030.1| Protein export protein prsA precursor [Bacillus cereus ATCC 14579]
 gi|218161946|gb|ACK61938.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus B4264]
 gi|228633997|gb|EEK90590.1| Foldase protein prsA 1 [Bacillus cereus m1550]
 gi|228639708|gb|EEK96117.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24]
 gi|228657034|gb|EEL12857.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4]
 gi|228726439|gb|EEL77662.1| Foldase protein prsA 1 [Bacillus cereus AH676]
 gi|296322810|gb|ADH05738.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
          Length = 286

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 42/248 (16%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I ++E+ D       +  +  M +  +          K +  E++ VD            
Sbjct: 35  ITKEEFYDQMKTQAGKQVLNNMVMEKVL--------IKNYKVEDKDVDKKF--------- 77

Query: 206 ADPSNAVLTQWFEKY----KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
               + +  Q+ +++    K      E  +         EK  +  I++ EL+  Y+   
Sbjct: 78  ----DEMKKQYGDQFDTLLKQQGIKEETIKTGVRAQLAQEKAIEKTITDKELKENYK--- 130

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317
                PEI+    ++  ++  A +  + L +GK F +LA++  +          LG F+ 
Sbjct: 131 -----PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGYFTA 184

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             +      D+ + L KK + +  +   FGY I  V++IK      F EVK DI   +  
Sbjct: 185 GKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKE--QKPFDEVKGDIKKDLVQ 240

Query: 378 TKASEKVK 385
            KA +   
Sbjct: 241 KKAQDAAF 248



 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 10/141 (7%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             T++ +E+K++   +++ +    K +   K+++E L  G S +E++++    +      
Sbjct: 117 EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G    GK V         L +    +   S+          Y  +++ +      + 
Sbjct: 177 GDLGYFTAGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKE--QKP 226

Query: 479 LEEVLTDVKKDWKTVKTAEEV 499
            +EV  D+KKD    K  +  
Sbjct: 227 FDEVKGDIKKDLVQKKAQDAA 247


>gi|52783929|ref|YP_089758.1| YacD [Bacillus licheniformis ATCC 14580]
 gi|163119182|ref|YP_077358.2| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           licheniformis ATCC 14580]
 gi|319648596|ref|ZP_08002810.1| YacD protein [Bacillus sp. BT1B_CT2]
 gi|52346431|gb|AAU39065.1| YacD [Bacillus licheniformis ATCC 14580]
 gi|145902685|gb|AAU21720.2| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           licheniformis ATCC 14580]
 gi|317389363|gb|EFV70176.1| YacD protein [Bacillus sp. BT1B_CT2]
          Length = 296

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 78/206 (37%), Gaps = 17/206 (8%)

Query: 196 VLNNRHVPAIADPSNAVL-------TQWFEKYKDNYRAPEYK---RISYILFDVHEKEKK 245
           V+           S+  +          +  + ++    E +   +I + +       K 
Sbjct: 74  VVTQMAEKNKIKVSDDDIEREFLLIKAVYNSFYEDENTTEKEWKEQIKHNILLEELLTKD 133

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           I IS+ EL++ Y KNK+ Y   +   ++ +V  ++ EA++  + LK+G  F   A E   
Sbjct: 134 IVISDSELKSFYNKNKDLYKFDDSYRLKHIVVKDKDEAEQVLKELKEGSSFEAAAAEHST 193

Query: 306 S----LSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
                     LG  +   E +P   L  +   L +       I  S GY I  +    P 
Sbjct: 194 DRYTAPYGGDLGFVNDQHENVPAEYLEKAE-QLKENQWVDEPIKTSQGYAIIQLKEKLPG 252

Query: 360 FTVSFQEVKKDIANQMRITKASEKVK 385
              ++ EVK  I  Q+ + +  +K  
Sbjct: 253 QAFTYSEVKNQIRRQIAMDQLGDKAS 278


>gi|322434749|ref|YP_004216961.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX9]
 gi|321162476|gb|ADW68181.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX9]
          Length = 672

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 112/352 (31%), Gaps = 79/352 (22%)

Query: 47  GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
             Q +  S    S +Q     +Q+     N   A      K +L +++    L    +++
Sbjct: 79  NDQIISRSDVDRSEEQLEQESAQQ-----NLSPADLASRQKDMLRDMIDQQLLLSKAKEL 133

Query: 107 GLEADHGRVWGE--IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
           GL AD   +     I +      K +            ++G++ +++       +    V
Sbjct: 134 GLNADAEVIRRLDDIRK----QNKLDSMDD--LEKAARQQGVSFEDFKAQIRNQILTQQV 187

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
           V                                    V      + A   +++E +K ++
Sbjct: 188 VR---------------------------------DEVGRRLQTTQAEQAKYYEAHKKDF 214

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             PE  R+S IL  + +     EI   E +                            A+
Sbjct: 215 EQPEQVRLSEILVPLPDTASPAEIEQAETK----------------------------AN 246

Query: 285 EAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
                L KG  F ++A++      +     LG F +  +  V + D  F+LA  G+ T  
Sbjct: 247 GLKSELMKGGDFAEVAKKNSGGPTAAQGGELGLFKRGALAKV-IEDQTFALA-PGESTQP 304

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           I    G+VI  V+  +       ++V+  I   + +      ++    +L E
Sbjct: 305 IRTRQGFVILKVNEHQEPGAAPMKDVEPQIQEALYMNAMQPALRAYLTKLRE 356



 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 84/270 (31%), Gaps = 26/270 (9%)

Query: 365 QEVKKDIANQMRITKASEKV----KEDYKRLEEFLALG--TSMDEISRREKIVSIDLPLV 418
             ++  I  Q+ ++KA E       E  +RL++        SMD++ +  +   +     
Sbjct: 115 DMLRDMIDQQLLLSKAKELGLNADAEVIRRLDDIRKQNKLDSMDDLEKAARQQGVSFEDF 174

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
               ++             Q+L +   +D+   +  T       Y     K+       +
Sbjct: 175 KAQIRN-------------QILTQQVVRDEVGRRLQTTQAEQAKYYEAHKKDFEQPEQVR 221

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
           L E+L  +       +  E+  +KAN L  E  K G +F ++ K                
Sbjct: 222 LSEILVPLPDTASPAEI-EQAETKANGLKSELMKGG-DFAEVAKKNSGGPTAAQGGELGL 279

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
            +          Q F+         PI     +V+ KV   +             + + +
Sbjct: 280 FKRGALAKVIEDQTFALAPGES-TQPIRTRQGFVILKVNEHQEPGAAPMKDVEPQIQEAL 338

Query: 599 ----NKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                +  L + +  L+    V +    I 
Sbjct: 339 YMNAMQPALRAYLTKLRENAYVDIQPGFID 368


>gi|119899176|ref|YP_934389.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72]
 gi|119671589|emb|CAL95502.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72]
          Length = 439

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/446 (13%), Positives = 132/446 (29%), Gaps = 76/446 (17%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +F+ ++    L   +  A+  V+    +  V  + +      +   Q    + ++ G  +
Sbjct: 11  LFVALVACSALALPVRAAVQPVAVDRIIAVVNNEVITAVQLRDRVDQTTRQLQRQ-GVQL 69

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
                    L++++L+ L+      Q   D  L  D   +   I R      ++NK +  
Sbjct: 70  PPADV----LERQLLERLIVERAQLQLARDSSLRVDDATLERAIGRI----AENNKMNTT 121

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVG------MFVGGMRPSNLLLDQAKRFYFEN 189
              + L R+G+    + +     +  + +        + V      N L      F  E 
Sbjct: 122 QLRAALERDGVAWDRFRNEIRTEILLSRLREREVDAKIVVTDAEVDNFLTSNPDAFSGEE 181

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
             V +I+L               L Q  +   +  R  E     +        +    IS
Sbjct: 182 FHVAHILLRAPEGATPEQI--DRLRQRADTVINRLRNGE----DFARVAADSSDAPDGIS 235

Query: 250 NDELQAEYEKNKEKYFSPEIR--------------------------------------- 270
             +L           +S  +R                                       
Sbjct: 236 GGDLGWRQRDRLPALYSDAVRDLRPGELSPLMRSAAGLHLVKLVDRRGGAAAGPQRLEQT 295

Query: 271 TVEQLVFPNQK---EADEAFQSL-------KKGKKFIQLAEEQGKSLS---DISLGSFSK 317
               ++        +A+   + L         G  F +LA+     LS      LG  + 
Sbjct: 296 RARHILIKTSAVLSDAEAEARLLGLRERVVAGGADFGELAKASSADLSAAKGGDLGWVNP 355

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
                     ++ ++ K G+ +P +   FG+ +  V   +       +  +    N +R 
Sbjct: 356 GDTV-PEFERAM-NVLKPGEVSPPVRSPFGWHLIQVLERRQQDVTD-ERKRMAARNILRE 412

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDE 403
            KA E  ++  ++L +   +   ++ 
Sbjct: 413 RKAEEAYEDWVRQLRDSTYVEYRLEN 438



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 104/298 (34%), Gaps = 47/298 (15%)

Query: 141 LAREG--INEKEYIDHY---TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
           L R+G  +   + ++       ++ R  +       +R  +  L++A     EN  ++  
Sbjct: 62  LQRQGVQLPPADVLERQLLERLIVERAQLQLARDSSLRVDDATLERAIGRIAENNKMNTT 121

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
            L                  W     D +R      I        E + KI +++ E+  
Sbjct: 122 QLRAALERDGV--------AW-----DRFRNEIRTEILLSRLREREVDAKIVVTDAEVDN 168

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAFQSLKKGKKFIQLAEEQ 303
               N + +   E   V  ++    +             AD     L+ G+ F ++A + 
Sbjct: 169 FLTSNPDAFSGEEF-HVAHILLRAPEGATPEQIDRLRQRADTVINRLRNGEDFARVAADS 227

Query: 304 GKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK--- 357
             +    S   LG   ++ +P +  +D++  L + G+ +P++  + G  +  + + +   
Sbjct: 228 SDAPDGISGGDLGWRQRDRLPAL-YSDAVRDL-RPGELSPLMRSAAGLHLVKLVDRRGGA 285

Query: 358 PSFTVSFQEVKK-----DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
            +     ++ +        +  +   +A  ++    +R+   +A G    E+++    
Sbjct: 286 AAGPQRLEQTRARHILIKTSAVLSDAEAEARLLGLRERV---VAGGADFGELAKASSA 340


>gi|157691720|ref|YP_001486182.1| peptidylprolyl isomerase PrsA [Bacillus pumilus SAFR-032]
 gi|157680478|gb|ABV61622.1| peptidylprolyl isomerase PrsA [Bacillus pumilus SAFR-032]
          Length = 292

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 18/229 (7%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            +++ ++            L L   ++   +   V    ++ +            L Q  
Sbjct: 35  DVTKEELYTTLKKQAGGDALNLLVQQKVLADKYKVSDKEIDKKMEEYKKTLGEDRLKQLQ 94

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +++  +Y      ++ Y L      +  I+I++ E++A Y+  K K           ++ 
Sbjct: 95  DEFGKDYI---KDQVKYELLTQKAAKANIKITDKEVKAYYDDLKGKI------RASHILV 145

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLA 333
            ++K ADE  + L KG+K+  +  E     +       +G F+KE   D + + + F L 
Sbjct: 146 ADKKTADEVEKKLDKGEKWDAVVSEYSTDTASAAQGGDVGWFAKEGQMDENFSKAAFKL- 204

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           K  + +  +   FGY I   +  +      + ++K D+  ++   K ++
Sbjct: 205 KVNEISKPVKSQFGYHIIKKTEERGK----YDDMKADLKKELLDQKQAD 249


>gi|321314718|ref|YP_004207005.1| molecular chaperone lipoprotein [Bacillus subtilis BSn5]
 gi|320020992|gb|ADV95978.1| molecular chaperone lipoprotein [Bacillus subtilis BSn5]
          Length = 294

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 89/204 (43%), Gaps = 28/204 (13%)

Query: 196 VLNNRHVPAIADPSNAV----LTQWFEKYKDNYRAPEY--------KRISYILFDVHEKE 243
           ++  + +      S+      L ++  +  D Y A E         +++ Y L      +
Sbjct: 57  LVQEKVLDKKYKVSDKEIDNKLKEYKTQLGDQYTALEKQYGKDYLKEQVKYELLTQKAAK 116

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
             I++++DE++  +E  K             ++  ++K A+E  + LKKG+KF  LA+E 
Sbjct: 117 DNIKVTDDEIKEYWEGLKG------QIRASHILVADKKTAEEIEKKLKKGEKFDALAKEY 170

Query: 304 ----GKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
               G + +   LG  SK+    D +   + F L K  + +  +   FGY I   +  + 
Sbjct: 171 STDTGSATNGGELGWISKDNEQLDATFRKAAFKL-KTNEVSDPVKTQFGYHIIKKTEERG 229

Query: 359 SFTVSFQEVKKDIANQMRITKASE 382
                ++++KK++ +++   K ++
Sbjct: 230 K----YEDMKKELKSEVLEQKLND 249


>gi|47567527|ref|ZP_00238238.1| rotamase family protein [Bacillus cereus G9241]
 gi|47555722|gb|EAL14062.1| rotamase family protein [Bacillus cereus G9241]
          Length = 288

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY-KDNYRA 226
           F   M+ S            E   +    ++++ V    D     L   F+   K     
Sbjct: 40  FYEQMKNSQTGKQTLNNMVMEKVLIKNYKVDDKEVDKKFDEMKKQLGDQFDTLLKQQGLK 99

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
            E  +         EK  +  I++ EL+  Y+        PEI+    ++  ++  A + 
Sbjct: 100 EETVKNGVRASLAQEKAIEKTITDKELKDYYK--------PEIK-ASHILVKDEATAKKV 150

Query: 287 FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            + L +GK F +LA++  +          LG F    +      D+ + L KK + +  +
Sbjct: 151 KEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVK-EFEDAAYKL-KKDEVSEPV 208

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
              FGY I  V++IK     SF++ K DI  ++   K  +
Sbjct: 209 KSQFGYHIIKVTDIKEPE-KSFEQSKADIKKEIVQKKMQD 247


>gi|229069842|ref|ZP_04203124.1| Foldase protein prsA 1 [Bacillus cereus F65185]
 gi|228713245|gb|EEL65138.1| Foldase protein prsA 1 [Bacillus cereus F65185]
          Length = 293

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 84/234 (35%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 65  YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  +++ +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 125 EKAIKATVTDKDVKDNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 176 RQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 234

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F EVK  I   +   +  +   +  +++   L     +   ++  K  
Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286



 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 54  ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKDN 140

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++R+    +              G+ V
Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALARQYSEDTGSKEQGGEISGFAPGQTV 200

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      +   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 201 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V +  K+
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273



 Score = 38.0 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + + E    G++F  + +       +  Q   +             +         
Sbjct: 155 EKTAKEIKEKVNNGEDFAALARQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KDK    + Q   +D        V+  L    
Sbjct: 215 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274

Query: 615 SVTVHDN 621
            + V++ 
Sbjct: 275 DIKVNNK 281


>gi|229196551|ref|ZP_04323295.1| Foldase protein prsA 1 [Bacillus cereus m1293]
 gi|228586907|gb|EEK44981.1| Foldase protein prsA 1 [Bacillus cereus m1293]
          Length = 288

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 60  YQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNEDELKEKMKPEIAF 119

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 279



 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 49  ELRQKYGESTLYQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNED- 107

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 108 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 135

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 136 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTV 195

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      +   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 196 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDSIRKDI 245

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V E  K+
Sbjct: 246 EQQRLQDTTGKWKQQVVNELLKD 268



 Score = 38.4 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 269

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 270 DIKVNDK 276


>gi|229127713|ref|ZP_04256702.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4]
 gi|228655790|gb|EEL11639.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4]
          Length = 293

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 84/234 (35%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 65  YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  +++ +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 125 EKAIKATVTDKDVKNNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 176 NQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 234

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F EVK  I   +   +  +   +  +++   L     +   ++  K  
Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286



 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 87/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 54  ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKNN 140

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++ +    +              G+ V
Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALANQYSEDTGSKEQGGEISGFAPGQTV 200

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      D   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 201 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V +  K+
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273



 Score = 38.4 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + + E    G++F  +         +  Q   +             +         
Sbjct: 155 EKTAKEIKEKVNNGEDFAALANQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KDK    + Q   +D        V+  L    
Sbjct: 215 VSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274

Query: 615 SVTVHDN 621
            + V++ 
Sbjct: 275 DIKVNNK 281


>gi|86160749|ref|YP_467534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85777260|gb|ABC84097.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 317

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/380 (13%), Positives = 109/380 (28%), Gaps = 96/380 (25%)

Query: 20  VLFVPFLIWGLSDALFSVSGSS----TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +L    L  G      + SG       V  V  + +P  +     +        +     
Sbjct: 8   ILIATALAAGCGRCGGARSGERPAPGAVAVVNGEPIPPDALARELRDAQAGAEGQAPAAG 67

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
           +        L +++LD+LV  A L Q      +     +V     R          F   
Sbjct: 68  DV-------LRRRVLDDLVDRALLLQQARARSIVVGQDQVERAFLRLRA-EYPGTHFDD- 118

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
                LA+E +++ E        L+   +                               
Sbjct: 119 ----LLAQERLSQAELKARLKDQLTVERLFEQ---------------------------- 146

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
                 V       +A + +++ ++   ++ PE                           
Sbjct: 147 -----EVFPQVQVVDAEVERYYAEHGAEFQEPERV------------------------- 176

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSL---SDIS 311
                           V Q+V  +++EA +  + L +  + F ++A     +        
Sbjct: 177 ---------------HVLQIVVASREEAAQVREKLRRNPQTFAEVARRSSIAPEGKGGGD 221

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           LG   +       + D+ F+L      + V    +G+ +  V   KP+   + ++ + +I
Sbjct: 222 LGFIGRGSGF-PEVFDTCFALP-VNVISDVTPSPYGFHLFKVVEKKPAQRRTLEQARAEI 279

Query: 372 ANQMRITKASEKVKEDYKRL 391
           A ++   K +    E  + L
Sbjct: 280 AEKLGREKRAGAQAEYLEAL 299


>gi|326940021|gb|AEA15917.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 283

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 55  YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 114

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 166 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 224

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F EVK+ I   +   +  +   +  +++   L     +   ++  K  
Sbjct: 225 E--LKPFDEVKEKIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 276



 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 44  ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 102

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 103 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 130

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 131 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 190

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      D   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 191 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKEKIRKDL 240

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V +  K+
Sbjct: 241 EQQRLQDTTGKWKQQVVNDLLKD 263



 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 204

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E K+K    L Q   +D        V+  L    
Sbjct: 205 VSDPVKTTYGYHIIKVTDKKELKPFDEVKEKIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 264

Query: 615 SVTVHDN 621
            + V++ 
Sbjct: 265 DIKVNNK 271


>gi|294497370|ref|YP_003561070.1| foldase protein PrsA [Bacillus megaterium QM B1551]
 gi|294347307|gb|ADE67636.1| foldase protein PrsA [Bacillus megaterium QM B1551]
          Length = 307

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 21/218 (9%)

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKY--------KDNYRAPEYKRISYILFDVHE 241
           RSV    + ++         +  L    E+Y        K          +   +     
Sbjct: 67  RSVTEEKVLSKKYKVTDKELDQQLNILREQYGDQVDSVIKQKGEKEVKDMLKVDILREKA 126

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
               I++S+ EL+  Y++ K             ++  ++K A+E    +KKG+ F  LA+
Sbjct: 127 ATAGIKVSDKELKKAYDEYKA---QKPQIRASHILVKDEKTANEVEAKIKKGEDFASLAK 183

Query: 302 EQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           E         +   LG F +  +      ++ + L KKG+ +  I   +GY I  + + K
Sbjct: 184 EYSTDQQSAANGGDLGYFGEGQMVK-EFEEAAYKL-KKGEVSKPIKTEYGYHIIKLVDKK 241

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
                SF++ K ++  Q++ +K  +   E  K++++ L
Sbjct: 242 --KVESFEKKKPELEQQIKRSKVDQ--AEANKKIQKEL 275


>gi|229108609|ref|ZP_04238221.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15]
 gi|228674864|gb|EEL30096.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15]
          Length = 286

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 29/195 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + F++ K  Y               E  +         EK  +  I++ EL+
Sbjct: 67  KVEDKDVDKKFDEMKKQYGDQFDTLLKQQGIKEETIKTGVRAQLAQEKAIEKTITDKELK 126

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA++  +         
Sbjct: 127 ENYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F+   +      D+ + L KK + +  +   FGY I  V++IK      F EVK D
Sbjct: 178 DLGYFTAGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKE--QKPFDEVKGD 233

Query: 371 IANQMRITKASEKVK 385
           I   +   KA +   
Sbjct: 234 IKKDLVQKKAQDAAF 248



 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 10/141 (7%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             T++ +E+K++   +++ +    K +   K+++E L  G S +E++++    +      
Sbjct: 117 EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G    GK V         L +    +   S+          Y  +++ +      + 
Sbjct: 177 GDLGYFTAGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKE--QKP 226

Query: 479 LEEVLTDVKKDWKTVKTAEEV 499
            +EV  D+KKD    K  +  
Sbjct: 227 FDEVKGDIKKDLVQKKAQDAA 247


>gi|254466473|ref|ZP_05079884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacterales
           bacterium Y4I]
 gi|206687381|gb|EDZ47863.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacterales
           bacterium Y4I]
          Length = 273

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 5/158 (3%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KS 306
            + L+A YE+        +      ++   ++EA +  + L  G  F  LA+E+      
Sbjct: 108 EEALRAAYEEKYSSGDGGDEFHAAHILVETEEEALDVIKELDDGADFATLAKERSTGPSG 167

Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
            S   LG F+   +      +++  L + G+ +  +   FG+ +  ++  + +    F E
Sbjct: 168 PSGGDLGWFTTGRMV-PEFEEAVIKL-RSGEVSGPVQTQFGWHVILLNERRKTEAPEFDE 225

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
           V+  +A++++      +V E     E        +D  
Sbjct: 226 VRAQLADELQQKAVEARVNELTAASEIERPEIEDLDPA 263


>gi|251772781|gb|EES53343.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum
           ferrodiazotrophum]
          Length = 382

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 112/355 (31%), Gaps = 71/355 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S +  V    +  S      K     I          +   S  L+  ++   ++    
Sbjct: 70  DSIMAVVNHHSITKSEVDRELKPTFEKIHATYQGPAYMQLVAS--LEYNVMMKKINERLE 127

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            +  + +GL      V   I        K+N        + LA +G+  ++Y     K L
Sbjct: 128 LEEADRLGLSVTDDEVDHAIDDIMQ---KNNIQERWQLKNALASQGLTFRQYRKKLKKQL 184

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +   +V                                    V +    S   +  +F K
Sbjct: 185 TVMKLVNQ---------------------------------EVRSTVVISPEEVRDYFLK 211

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           ++D YR P +  ++ I   + E     +I+                              
Sbjct: 212 HRDEYRLPAHVSLADIFLALPENPTPAQIAE----------------------------V 243

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +K+ +   + + +G  F  LA  + +   + S  +LG+ +K+ +    L    FS+   G
Sbjct: 244 RKKGEHVLRQIGRGDDFEMLAGSESQGPNAESGGALGNLTKDQLL-PELIGPAFSVP-VG 301

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             + +I    G+ I  V   +      F ++K+ I N +      ++++   ++L
Sbjct: 302 KTSGLIQTDRGFYIIKVLAREAQPYQKFDDIKQTILNTLTKKTTEKRLRLWLEKL 356


>gi|229101746|ref|ZP_04232463.1| Foldase protein prsA 1 [Bacillus cereus Rock3-28]
 gi|228681694|gb|EEL35854.1| Foldase protein prsA 1 [Bacillus cereus Rock3-28]
          Length = 287

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 35/242 (14%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I ++E+ +       +  +  M +                  E   +    + ++ V   
Sbjct: 35  ITKEEFYNQMKTQAGKQVLNNMVM------------------EKVLIKNYKVEDKDVDKR 76

Query: 206 ADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
            D +   +   F+   K      E  + +       EK  +  I++ EL+  Y+      
Sbjct: 77  FDETKKQVGDQFDTLLKQQGMKEETFKNTIRASLAQEKAIEKTITDKELKDNYK------ 130

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320
                     ++  ++  A +  + L +GK F +LA++  +          LG F    +
Sbjct: 131 ---PQIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFEHGKM 187

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 D+ + L KK + +  +   FGY I  V++IK     SF++ K DI  ++   K 
Sbjct: 188 VK-EFEDAAYKL-KKDEVSEPVKTQFGYHIIKVTDIKEPE-KSFEQSKADIKKELIAKKM 244

Query: 381 SE 382
            +
Sbjct: 245 QD 246



 Score = 36.9 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 54/141 (38%), Gaps = 9/141 (6%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             T++ +E+K +   Q++ +    K +   K+++E L  G S +E++++    +      
Sbjct: 117 EKTITDKELKDNYKPQIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G    GK V         L +    +   ++          Y  +++ +     ++ 
Sbjct: 177 GDLGFFEHGKMVKEFEDAAYKLKKDEVSEPVKTQF--------GYHIIKVTDIKEP-EKS 227

Query: 479 LEEVLTDVKKDWKTVKTAEEV 499
            E+   D+KK+    K  +  
Sbjct: 228 FEQSKADIKKELIAKKMQDGA 248


>gi|146296118|ref|YP_001179889.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409694|gb|ABP66698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 340

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/406 (15%), Positives = 123/406 (30%), Gaps = 95/406 (23%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           + + S   +  I  V + +  LI      +  +  +  V+ V   ++    +   +    
Sbjct: 1   MNRKSLIVITSIIFVSIILSLLIL-KDHIVKMIDDNKVVLEVNGDQITKREYKIRFNTLK 59

Query: 65  GMISQ------KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD---HGRV 115
               Q       +  V N +  R + L  ++   L+      Q      +         +
Sbjct: 60  ENAIQFSSRTDILDQVFNGKTYREL-LKDELFRILIEELLCLQEARRKNIYLTRQEEDEI 118

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              I        K +    + F   L + G +E  +     K                  
Sbjct: 119 RKYIEEL-----KRDMEMRNYFNQYLRKIGSDENHFYRDLQK------------------ 155

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
                         R ++ +    ++V      S++ + +++   K  +R  +   I   
Sbjct: 156 -------------TRIINKLY---KYVTERITLSDSEVIKYYNANKSQFRKIKVMDIFLR 199

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           + +  E  KK ++                                  A+E    LK+G+ 
Sbjct: 200 VENAEEDAKKRKV----------------------------------ANEIISELKRGED 225

Query: 296 FIQLAEEQGKSLS-DISLGSF------SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           F +L ++  +  S D   G         KE        + +F LA  G  + VI    GY
Sbjct: 226 FEKLVKKYSEVESLDGKKGIIDYFRKGEKEAQYGSVFEEEVFKLA-VGQISNVIKTVNGY 284

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            I  V + K    + F EVK +I  ++   K  E  K   + L++ 
Sbjct: 285 HIVKVIDEK---YMPFDEVKGEIQTKLIKQKKDEVFKSYIESLKKM 327



 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 12/138 (8%)

Query: 490 WKTVKTAEEVSSK--ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN------RMDNEN 541
            +     E+   +  AN+++ E  K G++F  + K     + + +         R   + 
Sbjct: 198 LRVENAEEDAKKRKVANEIISEL-KRGEDFEKLVKKYS-EVESLDGKKGIIDYFRKGEKE 255

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-KFISYLTQMMNK 600
             +G     +VF   V  +    I+    Y + KV + K  P  E   +  + L +    
Sbjct: 256 AQYGSVFEEEVFKLAVGQISNV-IKTVNGYHIVKVIDEKYMPFDEVKGEIQTKLIKQKKD 314

Query: 601 DLLDSVIAYLKSQYSVTV 618
           ++  S I  LK    +++
Sbjct: 315 EVFKSYIESLKKMSKISI 332


>gi|15613740|ref|NP_242043.1| protein secretion (post-translocation chaperonin) [Bacillus
           halodurans C-125]
 gi|46397037|sp|Q9KDN4|PRSA_BACHD RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|10173793|dbj|BAB04896.1| protein secretion (post-translocation chaperonin) [Bacillus
           halodurans C-125]
          Length = 333

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 106/289 (36%), Gaps = 32/289 (11%)

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
           + Y +   + L +  ++      +      +D+    +     V+        +      
Sbjct: 51  ERYGEAILQELVQRHLISQAADSVEIPQEEIDEELETFKSQIGVETDDEMLDALSNQFGI 110

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +     ++     + Y  P        L       + +EI+++E QA +++N++     E
Sbjct: 111 TVENKEEF----VNEYILPP-------LVLEKLAVEGVEITDEEKQAYFDENRDSLIEVE 159

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVS 324
                 ++  +++ A+E    L+ G  F +LA E     S    +  LG F K  +    
Sbjct: 160 ---ASHILVEDEETAEEVLDRLEAGDDFAELASEYSVDPSAEANNGDLGFFGKGDMV-PE 215

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK- 383
             ++ F++ +  + +  +  ++GY I  V++ K     S++E+++ I + +   ++  + 
Sbjct: 216 FEEAAFNM-EIDEVSEPVESTYGYHIILVTDRKD----SYEELEEKIHDTLMRERSRTQE 270

Query: 384 -------VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
                   + D   L++       + +    E    ID        +D 
Sbjct: 271 EVLRDLLAQADINVLDDQFEGLFDLPDAPPVEDTPEIDGEDASDEAEDQ 319


>gi|297538002|ref|YP_003673771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
           301]
 gi|297257349|gb|ADI29194.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
           301]
          Length = 262

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 73/188 (38%), Gaps = 8/188 (4%)

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDV--HEKEKKIEISNDELQAEYEKNKEKYFSPE 268
               +     + +Y A E      +L      +  KK  IS+ + +A YE+ K+ Y   E
Sbjct: 72  QEAQKLGLDKQADYVAREELSRRELLTSAYLQDFVKKNPISDADTKAAYEQYKKAYGDKE 131

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVS 324
             +   ++   + EA +    L KG  F +LA+E+            LG FS   +    
Sbjct: 132 Y-SARHILVKTEAEAKDIIAQLGKGADFAKLAKEKSMDPGSKEKGGDLGWFSPATMVKP- 189

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
            +D++  L K           FG+ +  + + + +  + + +VK  +   ++     + +
Sbjct: 190 FSDAVAGLQKGAVSATPAQTQFGWHVIKLVDTRSAQPLPYDKVKDGLQKNLQQRNLEKMM 249

Query: 385 KEDYKRLE 392
            +   + +
Sbjct: 250 SDLRTKAK 257



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV-- 557
            ++A  ++ +  K G +F  + K       +         +  +F    + + FS  V  
Sbjct: 142 EAEAKDIIAQLGK-GADFAKLAKEKSMDPGSKE----KGGDLGWFSPATMVKPFSDAVAG 196

Query: 558 ---EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
                V   P +    + V K+ +++       DK    L + + +  L+ +++ L+++ 
Sbjct: 197 LQKGAVSATPAQTQFGWHVIKLVDTRSAQPLPYDKVKDGLQKNLQQRNLEKMMSDLRTKA 256

Query: 615 SVTV 618
            + +
Sbjct: 257 KIDI 260


>gi|206973718|ref|ZP_03234636.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus H3081.97]
 gi|217959835|ref|YP_002338389.1| peptidylprolyl isomerase [Bacillus cereus AH187]
 gi|206747874|gb|EDZ59263.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus H3081.97]
 gi|217064695|gb|ACJ78945.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH187]
          Length = 283

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 55  YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQLGLKNEDELKEKMKPEIAF 114

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 166 KQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 274



 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 126 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFA 185

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 235

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V E  K+
Sbjct: 236 IRKDIEQQRLQDTTGKWKQQVVNELLKD 263



 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKLDAGQ 204

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 264

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 265 DIKVNDK 271


>gi|83749030|ref|ZP_00946037.1| Signal Peptide isomerase rotamase [Ralstonia solanacearum UW551]
 gi|83724293|gb|EAP71464.1| Signal Peptide isomerase rotamase [Ralstonia solanacearum UW551]
          Length = 299

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 5/160 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K    + DEL  +YEK K ++ + +      ++   + +A      LK G  F ++
Sbjct: 136 EDYVKNSPTTEDELHKQYEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEEI 195

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFT-PVIHGSFGYVIAHVSNI 356
           A+ Q K     + G       P   + +  +  +  KKG+ T   +   FG+ +  + + 
Sbjct: 196 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEITLTPVKTQFGWHVIRLDDT 255

Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394
           + +   +F++VK  +   M   +     K +   K L E 
Sbjct: 256 RDAKIPAFEDVKPQLLEMMMGDQNWQRAKFQAMLKDLREK 295


>gi|329962043|ref|ZP_08300054.1| hypothetical protein HMPREF9446_01629 [Bacteroides fluxus YIT
           12057]
 gi|328530691|gb|EGF57549.1| hypothetical protein HMPREF9446_01629 [Bacteroides fluxus YIT
           12057]
          Length = 712

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 97/722 (13%), Positives = 216/722 (29%), Gaps = 126/722 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     S  V  V  + V    +    +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETVSAQDYQAMVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   +I    G    S+  ++  +  ++    V    +++  + +GL      +   I  
Sbjct: 61  EYTEVIKFSSGMNALSDE-QTNQIKDEVWRRYVENKLVEKEAKKLGLTVSKAELQAIIDA 119

Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHYT----------K 157
                 +   F       F  D+    L       +  +   +Y ++Y           K
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQM-PSQYAEYYESMYKFWSFIEK 178

Query: 158 MLSRTDVVG-------------------MFVGGMRPSNLLL------------------- 179
            L +  +                      F G +  S+LLL                   
Sbjct: 179 SLVQARLQEKYQALITKSLFSNPVEAQDAFDGRVDQSDLLLAAIPYTSIVDSTITVTDSD 238

Query: 180 --------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK---YKDNYRA-- 226
                    +  R Y E R++ +I +     P         + ++  +      +Y    
Sbjct: 239 LKAAYDKKKEQFRQYVETRNIKFIDVQVTASPEDKAAIQKEMEEYTAQLAGTPADYTTFV 298

Query: 227 ----------PEYKRISYILFDVHEKEKKIEI----------SNDELQAEYEKNKEKYFS 266
                       Y     +  DV  +   + +          +++ + +   K       
Sbjct: 299 RSTGSTVPYVDLYYTAKSLPADVAARLDSVSVGGVYGPYYNVTDNTINSF--KKLASATL 356

Query: 267 PEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318
           P+     Q+    +  A      D  + ++K G  F ++A++ G++   + IS  ++   
Sbjct: 357 PDSIEFRQIQVVAEDAAKTKSLADSIYNAIKDGADFAEVAKKYGQTGEPTWISSANYEGA 416

Query: 319 YIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
            I   +L    +I +LA+  + T +  G    VI  V+  K +       V K       
Sbjct: 417 QIDGDNLKYITTITTLAQN-ELTNLALGQAN-VILQVTGKKATKDKYKVAVVKR-----P 469

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
           +  + E   + Y    +F+A   ++++++   +     L  +D          +  +   
Sbjct: 470 VEFSKETYSKAYNDFSQFIAANNTLEKMAANAEDAGYRL--LDKTDLYSSEHGIGGVRGT 527

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           +  L   F                   + V +   +P   R L  V   ++ +    K A
Sbjct: 528 KDALKWAFEAKAGEVSGLYECGESDRMLVVGVASIVPEGYRPLALVKDQLRFEILRDKKA 587

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
           E++ +          ++ KN       +  S+                    +S   S  
Sbjct: 588 EKIMADMKAANATSFEQYKNM---ANAVSDSVKHVTFAAPAYVPALRTSEPLVSAYASVA 644

Query: 557 VEMVKCFPIENGLSYVVFK-VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
                  PI+      V +     K+     ++   + L  M  + + +  ++ L  +  
Sbjct: 645 ELNKLSAPIKGNGGVFVLQPYAKEKLNETFNQETEETTLAAMHAR-MANQFMSDLYLKAD 703

Query: 616 VT 617
           V 
Sbjct: 704 VK 705


>gi|270157914|ref|ZP_06186571.1| chaperone SurA [Legionella longbeachae D-4968]
 gi|289163812|ref|YP_003453950.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella longbeachae
           NSW150]
 gi|269989939|gb|EEZ96193.1| chaperone SurA [Legionella longbeachae D-4968]
 gi|288856985|emb|CBJ10799.1| putative peptidyl-prolyl cis-trans isomerase SurA [Legionella
           longbeachae NSW150]
          Length = 431

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/433 (12%), Positives = 133/433 (30%), Gaps = 75/433 (17%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           KI L+ +F   ++ G++ A   +     V  V    +  S      +     I  +    
Sbjct: 4   KIALICIFFS-VVMGIAQAKQML--DKVVAVVNDGVITESELNKQVELSKKQILAQ---- 56

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
              +      L K++L +L+      Q  +  GL  D   +   I +        N  + 
Sbjct: 57  -KMQLPEESVLRKQVLQHLIDVDLQLQMAKKNGLTVDDTELNQAIEKIAS----ANHVTL 111

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVD 193
                 + R+G++  EY ++  K +  + +           ++  ++Q  +         
Sbjct: 112 TQLREEIVRQGMSWDEYRENIRKEMLLSHLQQKAVGRDAMVTSEQVEQYLKTEGGIVDRS 171

Query: 194 YIVLNNRH--VPAIADPSNAVLTQWFEKYKDNYRAPEYKRI-SYILFDVHEKEKKIEISN 250
            +    ++  +P   +P++  + +   K K      + K+   +    +     +  +  
Sbjct: 172 ALTYRIQNIVIPLGEEPTSEQVKK--AKNKAELLLSKIKKGDDFSRLAIENSSGEFALEG 229

Query: 251 DELQAEYEKNKEKYFSPEIR-------------------------------------TVE 273
            +L   +     + F+ E+                                       V 
Sbjct: 230 GDLGERHLAEIPELFAKEVVKMKVGQVAGPLRAGNGFQLIKLVSIGGENQHHIITKTHVR 289

Query: 274 QLVFP---------NQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYI 320
            ++            +K+    +Q +K GK F  +A++        +    LG  S   +
Sbjct: 290 HILLKPDPNMLPEDAKKQVRNIYQQIKAGKDFALMAKQYSLDSASAVKGGDLGWVSPGVL 349

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                  ++  LA   + +P +   FG+ +  V   K        + +     ++R    
Sbjct: 350 V-PEFEKAMDKLAIN-EISPPVKSQFGWHLIQVLGRKQE-----DDSEAFKVQKVRQFLQ 402

Query: 381 SEKVKEDYKRLEE 393
             K  E  +  ++
Sbjct: 403 QRKFAEAVQNWQQ 415


>gi|189499340|ref|YP_001958810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides BS1]
 gi|189494781|gb|ACE03329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides BS1]
          Length = 701

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 76/622 (12%), Positives = 187/622 (30%), Gaps = 102/622 (16%)

Query: 28  WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
           WG+  + FS  G +    V    V +  +   + + +     +      ++      L +
Sbjct: 30  WGMDFSGFSGGG-TLAGKVNGTPVEYRQYEQVYDRLVDDFRSRSPQAELTDGLER-ELRQ 87

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS-------PLFHGKD-NKFSHDVFVS 139
           +  D +V+   LD+  E   +      V   +            F   +      +    
Sbjct: 88  RAWDIVVNQIILDEQFEKYNIRVSDEEVLAAVESDNPPMVILQNFINPETGSIDREK--- 144

Query: 140 RLAREGINEK------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            L    ++ +         D   + L    + G     ++ S+  LD          S  
Sbjct: 145 -LDSSRMDPENRDVWLSIEDIIRRELMVNKLQGTLQAMVKVSDSELDALVERELGTFSAS 203

Query: 194 YIVLNNRHVPAIA--DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           + V     V   +    ++  + Q++E+ +D +R    + + Y++F              
Sbjct: 204 FAVFPYSAVGGDSLYSVADPEIKQYYEENRDLFRQEPTRSLEYVIFSA------------ 251

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
                                     P ++++      L    +   LA +    +S  S
Sbjct: 252 -------------------------IPTERDSLTIKTELASLAEDFTLAADDSAFVSLQS 286

Query: 312 LGSFSKEYIPDVS-----LADSIFSLA--KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
             + + + +   +       D +F+ +  K G     I     Y +  V  +    TV+ 
Sbjct: 287 DRADTYDKVYSRADFSVQAGDDLFADSGLKAGALIGPIVDRSSYRMIKVQEVMKGDTVAR 346

Query: 365 QE------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
                    K D++ +       ++ +   +++ + +  G    +++ +    S D    
Sbjct: 347 ASHILIPFSKGDVSGE-------KEARGLAEKIMQEIRSGKKFADLAMQY---SQDPGSA 396

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G        A +P   Q++FR          +    L       +++     +    
Sbjct: 397 ANGGDLGWFSRTAMVPEFAQVVFRAATGTLAGPVETQYGLH-----IIKVTGKDNSAI-- 449

Query: 479 LEEVLTDVKKDWK-TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
                +++ ++ + +  T E    KA +  +E  ++G  F    +    +  TT    + 
Sbjct: 450 ---ACSEIVRNIRPSGATLENARRKAAEFQIEAEEKG--FDRATEIFEKTKNTTGPFTKT 504

Query: 538 DN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS-----KVGPVQEKDKFI 591
               +  +    +   F+          ++    ++V +V        +      +D   
Sbjct: 505 GVIPDIGYNNSIVKFAFNASKGAFSDI-VQVDAGFLVLRVAEINDSGFRSLDEGLQDMIR 563

Query: 592 SYLTQMMNKDLLDSVIAYLKSQ 613
             L      + LD  ++ L  Q
Sbjct: 564 QELIVRKKGEALDGRLSLLLKQ 585


>gi|229155916|ref|ZP_04284017.1| Foldase protein prsA 1 [Bacillus cereus ATCC 4342]
 gi|228627523|gb|EEK84249.1| Foldase protein prsA 1 [Bacillus cereus ATCC 4342]
          Length = 288

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 60  YQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNEDELKEKMKPEIAF 119

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  E   +  +++   L     +    +  K
Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQETTGKWKQQVVNELLKDADIKVNDKEFK 279



 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 49  ELRQKYGESTLYQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNED- 107

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 108 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 135

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 136 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTV 195

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      +   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 196 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDSIRKDI 245

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  E       Q+V E  K+
Sbjct: 246 EQQRLQETTGKWKQQVVNELLKD 268



 Score = 38.4 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 6/134 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E     +        Q         V+  L    
Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQETTGKWKQQVVNELLKDA 269

Query: 615 SVTVHDNLIQRYLD 628
            + V+D   +   +
Sbjct: 270 DIKVNDKEFKNAFE 283


>gi|30020404|ref|NP_832035.1| peptidylprolyl isomerase [Bacillus cereus ATCC 14579]
 gi|46396824|sp|Q81DT1|PRSA3_BACCR RecName: Full=Foldase protein prsA 3; Flags: Precursor
 gi|29895955|gb|AAP09236.1| Protein export protein prsA precursor [Bacillus cereus ATCC 14579]
          Length = 283

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 84/234 (35%), Gaps = 28/234 (11%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 55  YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 114

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  +++ +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 115 EKAIKATVTDKDVKNNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 165

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 166 NQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 224

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                 F EVK  I   +   +  +   +  +++   L     +   ++  K  
Sbjct: 225 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 276



 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 87/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 44  ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 102

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 103 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKNN 130

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++ +    +              G+ V
Sbjct: 131 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALANQYSEDTGSKEQGGEISGFAPGQTV 190

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      D   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 191 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 240

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V +  K+
Sbjct: 241 EQQRLQDTTGKWKQQVVNDLLKD 263



 Score = 38.0 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + + E    G++F  +         +  Q   +             +         
Sbjct: 145 EKTAKEIKEKVNNGEDFAALANQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 204

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KDK    + Q   +D        V+  L    
Sbjct: 205 VSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 264

Query: 615 SVTVHDN 621
            + V++ 
Sbjct: 265 DIKVNNK 271


>gi|82701654|ref|YP_411220.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
 gi|122070651|sp|Q2YBP3|SURA_NITMU RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|82409719|gb|ABB73828.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
          Length = 440

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/412 (14%), Positives = 120/412 (29%), Gaps = 63/412 (15%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V    +            L  + ++ G            L+K++L+ ++      Q 
Sbjct: 40  VAVVNENVITRHELDEMLGAMLKQLQKQ-GVQPPPPAV----LEKQLLERIILNRVQLQL 94

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
             + GL      +   + R      ++NK S   F   LA +G++  ++ D     +   
Sbjct: 95  ANETGLTVSDAELDQTLRRI----AQENKMSLQEFDRALAEDGVSFSKFRDEIRDEIILV 150

Query: 163 DVVGM-FVGGMRPSNLLLDQAKRFYFE------------------------NRSVDYIVL 197
            +        +  +   +D       +                         R       
Sbjct: 151 RLKEREVSNRVSVTEGEVDHFLETQEDSPSQSDEYRIAHILIQVSEGADPLKRDAARQRA 210

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKD-------NYRAPEYKRISYILFDVHEKEKKIE--- 247
            +      A    A +   F    D       N+R        +       K  +I    
Sbjct: 211 ESALAKLKAGTEFAQVAAEFSDAPDAMEGGLLNWRPAAQLTKKFAEILTPMKPGEITGII 270

Query: 248 -------ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD------EAFQSLKKGK 294
                  I     +   +           R +   +     EAD      E  + L  G 
Sbjct: 271 PSPNGFHILKLVERRNQDTVTTMIDQTHARHILIKISELTSEADAHRRVTELKERLDNGS 330

Query: 295 KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           KF +LA+   E   + +   LG  S           ++ +L K G+ +  +   FG+ + 
Sbjct: 331 KFEELAKLHSEDASAPTGGDLGWISPGDTV-PEFEQAMSAL-KPGEISSPVQSPFGWHLI 388

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
            V   + +  VS +  ++     +R  KA    +E  +RL +   +   ++E
Sbjct: 389 QVIERR-TQDVSQERKRQSARQAIRARKAETAFQEWLQRLRDRAYVEYRLEE 439



 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 115/370 (31%), Gaps = 48/370 (12%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             +L+R  +      G+  S+  LDQ  R   +   +     +          S      
Sbjct: 84  RIILNRVQLQLANETGLTVSDAELDQTLRRIAQENKMSLQEFDRALAEDGVSFS------ 137

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
                   +R      I  +     E   ++ ++  E+    E  ++     +   +  +
Sbjct: 138 -------KFRDEIRDEIILVRLKEREVSNRVSVTEGEVDHFLETQEDSPSQSDEYRIAHI 190

Query: 276 VFPN------------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPD 322
           +               ++ A+ A   LK G +F Q+A E   +   +  G  + +     
Sbjct: 191 LIQVSEGADPLKRDAARQRAESALAKLKAGTEFAQVAAEFSDAPDAMEGGLLNWRPAAQL 250

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS--FQEVKKD-IANQMRITK 379
                 I +  K G+ T +I    G+ I  +   +   TV+    +     I  ++    
Sbjct: 251 TKKFAEILTPMKPGEITGIIPSPNGFHILKLVERRNQDTVTTMIDQTHARHILIKISELT 310

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           +          L+E L  G+  +E+++         P     G    G  V   P  EQ 
Sbjct: 311 SEADAHRRVTELKERLDNGSKFEELAK-LHSEDASAPTGGDLGWISPGDTV---PEFEQA 366

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           +  +     P      V  P G +  +Q+ E              DV ++ K     + +
Sbjct: 367 MSAL----KPGEISSPVQSPFG-WHLIQVIERR----------TQDVSQERKRQSARQAI 411

Query: 500 SSKANQLVLE 509
            ++  +   +
Sbjct: 412 RARKAETAFQ 421


>gi|78776717|ref|YP_393032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497257|gb|ABB43797.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 277

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 106/268 (39%), Gaps = 16/268 (5%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
           ++ L+   ++ +  +      +++ DV    +   +     +   K+  F  + ++ +V 
Sbjct: 11  LALLSAISLSAQTLVSVNGTEITQQDVDKELMAATQGRFNQVPAEKQAEFRKQVLEQLVA 70

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE--KKIEISNDELQA 255
                            ++    K+ Y     +    I   V +K    KI ISNDEL+ 
Sbjct: 71  KELVYDDAKKTGVLTSPEY----KEKYEEVTQRIQKEIAIQVWQKREIDKIAISNDELKK 126

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQLAEEQG---KS 306
            Y+ NKE++   E      ++   + +A      LK  KG     KF++LA+ +     +
Sbjct: 127 YYDANKEEFVENESVNARHILVEKESDAKNIIAELKPLKGDALKNKFMELAKSKSTCASA 186

Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
                LG F+   +      D  FS+  K      +   FGY + ++ + K   T +F E
Sbjct: 187 AEGGDLGYFTAGQMV-PEFNDKAFSMKAKEMTLEPVKTQFGYHVIYIEDKKAKATKNFTE 245

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEF 394
           VK  I  ++++ KA   +    K LE+ 
Sbjct: 246 VKSFIEQRLKMEKAKTVMLAKMKELEKK 273


>gi|222095920|ref|YP_002529977.1| peptidylprolyl isomerase [Bacillus cereus Q1]
 gi|221239978|gb|ACM12688.1| protein export protein prsa [Bacillus cereus Q1]
          Length = 283

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 55  YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQLGLKNEDELKEKMKPEIAF 114

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 166 KQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNGLLKDADIKVNDKEFK 274



 Score = 38.4 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKLDAGQ 204

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNGLLKDA 264

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 265 DIKVNDK 271



 Score = 38.4 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 50/148 (33%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 126 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFA 185

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 235

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V    K+
Sbjct: 236 IRKDIEQQRLQDTTGKWKQQVVNGLLKD 263


>gi|117925616|ref|YP_866233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp.
           MC-1]
 gi|117609372|gb|ABK44827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp.
           MC-1]
          Length = 442

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 74/501 (14%), Positives = 152/501 (30%), Gaps = 92/501 (18%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           + WV  + +V + +   +         V        V  + +  S   +  + ++   S+
Sbjct: 5   KRWVRWVIMVSMILLSTLT--KPVEAGVPLDGIAAVVEGEIILESEIADQLRAQVMKFSR 62

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
                   E+     L +++LD  V      Q  + +G+      V G + R      + 
Sbjct: 63  ------AGEQVDVALLRRRVLDGAVMRVLRAQKAKQLGINLKDADVDGAVQRM----AQH 112

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           N  S + F   LAREG+    Y+      L    ++                        
Sbjct: 113 NNVSVEQFKMMLAREGVGFDSYLSSIRDQLYVQQIIRQV--------------------- 151

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
                       +      S+  +   ++  + +   PE             + K+I +S
Sbjct: 152 ------------ILPSVRVSDEEVQDLYKATRQD---PEKIGGE-----PELRIKQILLS 191

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS- 308
                            PE   +   V     +A      L+ G  F +LA E     S 
Sbjct: 192 ----------------VPENALI-HRVREISDKAKSLVSQLRGGASFARLASEHSDDPSG 234

Query: 309 --DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF---TVS 363
                +G F +  +    + D +F L + G  +  +  + G+ I  V+  +         
Sbjct: 235 LNGGDMGWFKRGEL-QAQIEDLVFKL-EDGAISEPVRTTQGFHIFMVAERRVQQHFGQSE 292

Query: 364 FQEVKKDIANQMRI------TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
              VK    + +         + S +V+   ++L   +  G S  E+++R    S D   
Sbjct: 293 GDHVKVYARHILLKVAPNSDAQTSAQVRNQLEKLRREIEAGASFAEVAKRY---SQDDGS 349

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
               G          +P  E + F +     P      V  P G +  +++ +    +  
Sbjct: 350 AQKGGDLGGFGRGVMVPSFEDVAFFL----KPGVVSEPVRSPFG-WHLIEVTKREEQKAD 404

Query: 478 KLEEVLTDVKKDWKTVKTAEE 498
            ++E   ++    +  K    
Sbjct: 405 TMDEAKKELTVRLREAKIKAR 425


>gi|229095647|ref|ZP_04226628.1| Foldase protein prsA 1 [Bacillus cereus Rock3-29]
 gi|229114599|ref|ZP_04244013.1| Foldase protein prsA 1 [Bacillus cereus Rock1-3]
 gi|228668664|gb|EEL24092.1| Foldase protein prsA 1 [Bacillus cereus Rock1-3]
 gi|228687779|gb|EEL41676.1| Foldase protein prsA 1 [Bacillus cereus Rock3-29]
          Length = 287

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 35/242 (14%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I ++++ +   +      + GM +                  E   +    ++++ V   
Sbjct: 35  ITKEDFYNEMKQKAGSQVLQGMVM------------------EKVLIKNYKVDDKEVDKK 76

Query: 206 ADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
            D +   +   F+   K      E  +         EK  +  I++ EL+  Y+      
Sbjct: 77  LDETKKQVGDQFDTLLKQQGMKEETFKNMLRAQLAQEKAIEKTITDKELKENYK------ 130

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320
             PEI+    ++  ++  A +  + L +GK F +LA++  +          LG F    +
Sbjct: 131 --PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFEHGKM 187

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 D+ + L KK + +  +   FGY I  V++IK     SF++ K DI  ++   K 
Sbjct: 188 VK-EFEDAAYKL-KKDEVSEPVKTQFGYHIIKVTDIKEPE-KSFEQSKADIKKELIAKKM 244

Query: 381 SE 382
            +
Sbjct: 245 QD 246


>gi|225862989|ref|YP_002748367.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus 03BB102]
 gi|225790183|gb|ACO30400.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus 03BB102]
          Length = 287

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + +++ K  Y               E  +         EK  +  I++ EL+
Sbjct: 67  KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA++  +         
Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +      D+ + L KK + +  +   FGY I  V++IK     SF++ K D
Sbjct: 178 DLGFFGAGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234

Query: 371 IANQMRITKASE 382
           I  ++   KA +
Sbjct: 235 IKKEIVQKKAQD 246


>gi|118476653|ref|YP_893804.1| peptidylprolyl isomerase [Bacillus thuringiensis str. Al Hakam]
 gi|196044235|ref|ZP_03111471.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus 03BB108]
 gi|229090092|ref|ZP_04221342.1| Foldase protein prsA 1 [Bacillus cereus Rock3-42]
 gi|229183351|ref|ZP_04310579.1| Foldase protein prsA 1 [Bacillus cereus BGSC 6E1]
 gi|301052687|ref|YP_003790898.1| peptidylprolyl isomerase [Bacillus anthracis CI]
 gi|118415878|gb|ABK84297.1| protein export protein [Bacillus thuringiensis str. Al Hakam]
 gi|196024874|gb|EDX63545.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus 03BB108]
 gi|228600135|gb|EEK57727.1| Foldase protein prsA 1 [Bacillus cereus BGSC 6E1]
 gi|228693169|gb|EEL46880.1| Foldase protein prsA 1 [Bacillus cereus Rock3-42]
 gi|300374856|gb|ADK03760.1| peptidylprolyl isomerase [Bacillus cereus biovar anthracis str. CI]
          Length = 287

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + +++ K  Y               E  +         EK  +  I++ EL+
Sbjct: 67  KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA++  +         
Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +      D+ + L KK + +  +   FGY I  V++IK     SF++ K D
Sbjct: 178 DLGFFGAGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234

Query: 371 IANQMRITKASE 382
           I  ++   KA +
Sbjct: 235 IKKEIVQKKAQD 246


>gi|291483469|dbj|BAI84544.1| molecular chaperone [Bacillus subtilis subsp. natto BEST195]
          Length = 294

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 88/204 (43%), Gaps = 28/204 (13%)

Query: 196 VLNNRHVPAIADPSNAV----LTQWFEKYKDNYRAPEY--------KRISYILFDVHEKE 243
           ++  + +      S+      L ++  +  D Y A E         +++ Y L      +
Sbjct: 57  LVQEKVLDKKYKVSDKEIDNKLKEYKTQLGDQYTALEKQYGKDYLKEQVKYELLTQKAAK 116

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
             I++++DE++  +E  K             ++  ++K A+E  + LKKG+KF  LA+E 
Sbjct: 117 DNIKVTDDEIKEYWEGLKG------QIRASHILVADKKTAEEIEKKLKKGEKFDALAKEY 170

Query: 304 ----GKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
               G + +   LG  SK+    D +   + F L K  + +  +   FGY I   +  + 
Sbjct: 171 STDTGSATNGGELGWISKDNEQLDSTFRKAAFKL-KTNEVSDPVKTQFGYHIIKKTEERG 229

Query: 359 SFTVSFQEVKKDIANQMRITKASE 382
                + ++KK++ +++   K ++
Sbjct: 230 K----YDDMKKELKSEVLEQKLND 249


>gi|77165200|ref|YP_343725.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|254434050|ref|ZP_05047558.1| SurA N-terminal domain family [Nitrosococcus oceani AFC27]
 gi|122070652|sp|Q3JAF1|SURA_NITOC RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|76883514|gb|ABA58195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|207090383|gb|EDZ67654.1| SurA N-terminal domain family [Nitrosococcus oceani AFC27]
          Length = 426

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 59/435 (13%), Positives = 142/435 (32%), Gaps = 63/435 (14%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           VL   F+++    +  +++    V  V    V  S      +     ++ + G  +    
Sbjct: 4   VLVTIFVLFWPIGSFAAINLDRIVAVVNEDIVLESELEQMVRTVQDQLAAQ-GTSLPPGY 62

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                L++++L+ LV      Q     G++     +   + R      +DN  +   F +
Sbjct: 63  V----LERQVLERLVMEQLQLQLAARTGIQVGDETLNEALGRI----AQDNGLTLSQFRN 114

Query: 140 RLAREGINEKEYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFEN--RSVDY-- 194
            L ++G +   + ++  K L  + +        +  S   +D       +   +   Y  
Sbjct: 115 VLEQDGYDFPAFRENIRKELIISQLHKREVNDRVSVSKAEIDNFLTNQKKRGNQDAQYHL 174

Query: 195 ----IVLNNRHVPAIADPS----NAVLTQW-----FEKYKDNYRAPEYK----------- 230
               I +     P     +      VL Q      F+K    Y   +             
Sbjct: 175 AHILITVPEAASPEQVQAAKAKAEQVLQQLREGADFQKVAVTYSDGQQALEGGDLGWRKM 234

Query: 231 -RISYILFDVHEKEKKIEISNDE--------LQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
            ++  +  DV  + +  +IS           ++    + + +           ++    +
Sbjct: 235 GQLPTLFVDVVPQLQAGDISKLIRSPSGFHIVKLLDYRGEGQQQLVTQTQARHILLRADE 294

Query: 282 EADE---------AFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADS 328
            A E           Q +  G  F +LA+    ++  +L    LG  S   +      ++
Sbjct: 295 LASEREVQLRLSQLRQRILSGDDFSELAQAHSDDKASALKGGDLGWVSPGQMI-PRFEEA 353

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           + SL + G+ +      FG+ +  V + +       +  +     ++R  K  E+++   
Sbjct: 354 MRSL-EPGEISEPFKTQFGWHVVQVLDRRQENMTE-EFNRNRAKMEIRQRKVEEELENWL 411

Query: 389 KRLEEFLALGTSMDE 403
           ++L +   +   +D 
Sbjct: 412 RQLRDEAYVEYRLDN 426



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/394 (13%), Positives = 123/394 (31%), Gaps = 45/394 (11%)

Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ--AKRFYFENRSVDYIVLN---------N 199
                 +M+          G   P   +L++   +R   E   +               N
Sbjct: 36  LESELEQMVRTVQDQLAAQGTSLPPGYVLERQVLERLVMEQLQLQLAARTGIQVGDETLN 95

Query: 200 RHVPAIADPSNAVLTQWFEK-YKDNYRAPEYKR-----ISYILFDVHEKEKKIEISNDEL 253
             +  IA  +   L+Q+     +D Y  P ++      +        E   ++ +S  E+
Sbjct: 96  EALGRIAQDNGLTLSQFRNVLEQDGYDFPAFRENIRKELIISQLHKREVNDRVSVSKAEI 155

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQSLKKGKKFIQLA- 300
                  K++        +  ++               + +A++  Q L++G  F ++A 
Sbjct: 156 DNFLTNQKKRGNQDAQYHLAHILITVPEAASPEQVQAAKAKAEQVLQQLREGADFQKVAV 215

Query: 301 --EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              +  ++L    LG      +P     D +  L + GD + +I    G+ I  + + + 
Sbjct: 216 TYSDGQQALEGGDLGWRKMGQLP-TLFVDVVPQL-QAGDISKLIRSPSGFHIVKLLDYRG 273

Query: 359 SFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
                     +     +R  +  +  +V+    +L + +  G    E+++          
Sbjct: 274 EGQQQLVTQTQARHILLRADELASEREVQLRLSQLRQRILSGDDFSELAQAHSDDKASAL 333

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
                G    G+ +   P  E+ +  +    +P           G ++   +        
Sbjct: 334 KGGDLGWVSPGQMI---PRFEEAMRSL----EPGEISEPFKTQFGWHVVQVLDRRQENMT 386

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
            +        K + +  K  EE+ +   QL  E 
Sbjct: 387 EEFN--RNRAKMEIRQRKVEEELENWLRQLRDEA 418


>gi|89100557|ref|ZP_01173417.1| post-translocation molecular chaperone [Bacillus sp. NRRL B-14911]
 gi|89084744|gb|EAR63885.1| post-translocation molecular chaperone [Bacillus sp. NRRL B-14911]
          Length = 293

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 6/160 (3%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            I   L      E +I++  DE++A +E+NK+++   E      ++  ++  A E    L
Sbjct: 119 DIEKYLKTEKLLEPRIDLKEDEIKAYFEENKDQFAQQEQVKASHILVEDEATAKEVKSKL 178

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            KG++F  LA+E         S   LG F K  +       +     K  + +  +   +
Sbjct: 179 DKGEEFADLAKEYSTDASNAESGGELGYFGKGEMEAAFEEAA--FELKANEISGPVKTDY 236

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           GY I  V + K +    +++ K+     +   +   +   
Sbjct: 237 GYHIIKVEDKKEAKEAVYEDSKEAAKKALFDERMQTEYYN 276


>gi|99082756|ref|YP_614910.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040]
 gi|99039036|gb|ABF65648.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040]
          Length = 283

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 64/172 (37%), Gaps = 12/172 (6%)

Query: 227 PEYKRISYILFDVHEKEKKI-------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           PEY R+S            +         + D ++  Y+         +      ++  +
Sbjct: 88  PEYVRLSVEHEQRSLLASDVIEAVMEGAQTEDAIRDAYDARYSSDDGGDEFNASHILLES 147

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKG 336
           ++ A E    L +G  F  LA+E     S     +LG F    +       +  S  + G
Sbjct: 148 EEAALEIKSQLDEGADFAALAKESSTGPSGPNGGALGWFENGRMV-PEFE-AAISDMRSG 205

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           + +  +   FG+ I  +++ +      +++V+ +IA ++      +++ +  
Sbjct: 206 EVSGPVQTQFGWHIIKLNDRRKLEAPEYEDVRDEIAQELAQQAVEDRISQLT 257


>gi|300114054|ref|YP_003760629.1| peptidylprolyl isomerase [Nitrosococcus watsonii C-113]
 gi|299539991|gb|ADJ28308.1| Peptidylprolyl isomerase [Nitrosococcus watsonii C-113]
          Length = 426

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/443 (12%), Positives = 145/443 (32%), Gaps = 69/443 (15%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           + K+ + ++ +    W +     ++S    V  V    V  S      +     ++ + G
Sbjct: 1   MGKVLVAIVVL---FWTMGS-FATMSLDRIVAVVNEDIVLESELEQMVRTVQDQLAAQ-G 55

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
             +         L++++L+ LV      Q     G++     +   + R      ++N  
Sbjct: 56  TSLPPGYV----LERQVLERLVMEQLQLQLAARTGIQVGDETLNEALGRI----AQNNGL 107

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFE--N 189
           +   F + L ++G +   + ++  K L  + +        +  S   +D       +  N
Sbjct: 108 TLSQFRNVLEQDGYDFPNFRENIRKELIISQLHKREVNDRVSVSKAEIDNFLATQKKHGN 167

Query: 190 RSVDY------IVLNNRHVPAIAD----PSNAVLTQW-----FEKYKDNYRAPEY----- 229
           +   Y      I +     P         +  VL Q      F+K    Y   +      
Sbjct: 168 QDAQYHLAHILITVPEAASPEQVQGAKAKAEQVLQQLREGTDFQKVAVTYSDGQQALEGG 227

Query: 230 ----KRISYILFDVHEKEKKIEISN--DELQA----------EYEKNKEKYFSPEIRTVE 273
               +++  +     +   ++++      +++          EY     +    +     
Sbjct: 228 DLGWRKVGQLPTLFVDVVPQLQVGEISKLIRSPSGFHIVKLLEYRGEGGQQLVTQT-QAR 286

Query: 274 QLVFPNQKEADEAFQSLK---------KGKKFIQLAE----EQGKSLSDISLGSFSKEYI 320
            ++    + A E    L+          G  F +LA+    ++  +L    LG  S   +
Sbjct: 287 HILLRADELASEQEVQLRLSQLRQRILSGDDFSELAQAHSDDKASALKGGDLGWVSPGQM 346

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 +++ SL + G+ +      FG+ +  V + +       +  +     ++   K 
Sbjct: 347 I-PRFEEAMRSL-EPGEISEPFKTQFGWHVVQVLDRRQENVTE-EFNRNRAKTEIHQRKV 403

Query: 381 SEKVKEDYKRLEEFLALGTSMDE 403
            E+++   ++L +   +   +D 
Sbjct: 404 EEELENWLRQLRDEAYVEYRVDN 426



 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/395 (12%), Positives = 121/395 (30%), Gaps = 46/395 (11%)

Query: 138 VSRLAREGIN-EKEY--IDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSV 192
             +LA +G +    Y       + L    +        G++  +  L++A       R  
Sbjct: 48  QDQLAAQGTSLPPGYVLERQVLERLVMEQLQLQLAARTGIQVGDETLNEAL-----GRIA 102

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
               L       + +         ++    N+R    K +        E   ++ +S  E
Sbjct: 103 QNNGLTLSQFRNVLE------QDGYDF--PNFRENIRKELIISQLHKREVNDRVSVSKAE 154

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQSLKKGKKFIQLA 300
           +       K+         +  ++               + +A++  Q L++G  F ++A
Sbjct: 155 IDNFLATQKKHGNQDAQYHLAHILITVPEAASPEQVQGAKAKAEQVLQQLREGTDFQKVA 214

Query: 301 ---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +  ++L    LG      +P     D +  L + G+ + +I    G+ I  +   +
Sbjct: 215 VTYSDGQQALEGGDLGWRKVGQLP-TLFVDVVPQL-QVGEISKLIRSPSGFHIVKLLEYR 272

Query: 358 PSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
                      +     +R  +  + ++V+    +L + +  G    E+++         
Sbjct: 273 GEGGQQLVTQTQARHILLRADELASEQEVQLRLSQLRQRILSGDDFSELAQAHSDDKASA 332

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
                 G    G+ +   P  E+ +  +    +P           G ++   +       
Sbjct: 333 LKGGDLGWVSPGQMI---PRFEEAMRSL----EPGEISEPFKTQFGWHVVQVLDRRQENV 385

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
             +        K +    K  EE+ +   QL  E 
Sbjct: 386 TEEFN--RNRAKTEIHQRKVEEELENWLRQLRDEA 418


>gi|324326356|gb|ADY21616.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 283

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 55  YQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNEDELKEKMKPEIAF 114

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 166 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 274



 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 44  ELRQKYGESTLYQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNED- 102

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 103 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 130

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 131 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTV 190

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      +   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 191 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDSIRKDI 240

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V E  K+
Sbjct: 241 EQQRLQDTTGKWKQQVVNELLKD 263



 Score = 38.4 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 204

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 264

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 265 DIKVNDK 271


>gi|228957422|ref|ZP_04119177.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228802255|gb|EEM49117.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 287

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 35/242 (14%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I ++E+ +       +  +  M +                  E   +    ++++ V   
Sbjct: 35  ITKEEFYNQMKTQAGKQVLNNMVM------------------EKVLIKNYKVDDKEVDKK 76

Query: 206 ADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
            D +   +   F+   K      E  +         EK  +  I++ EL+  Y+      
Sbjct: 77  FDETKKQVGDQFDTLLKQQGLKEETFKNMLRAQLAQEKAIEKTITDKELKDNYK------ 130

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320
             PEI+    ++  ++  A +  + L +GK F +LA++  +          LG F    +
Sbjct: 131 --PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKM 187

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 D+ + L KK + +  +   FGY I  V++IK     SF++ K DI  ++   K 
Sbjct: 188 VK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKADIKKELVAKKV 244

Query: 381 SE 382
            +
Sbjct: 245 QD 246



 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 54/141 (38%), Gaps = 9/141 (6%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             T++ +E+K +   +++ +    K +   K+++E L  G S +E++++    +      
Sbjct: 117 EKTITDKELKDNYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G    GK V         L +    +   S+          Y  +++ +     ++ 
Sbjct: 177 GDLGFFGPGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EKS 227

Query: 479 LEEVLTDVKKDWKTVKTAEEV 499
            E+   D+KK+    K  +  
Sbjct: 228 FEQSKADIKKELVAKKVQDGA 248


>gi|332665327|ref|YP_004448115.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334141|gb|AEE51242.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 702

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 93/720 (12%), Positives = 208/720 (28%), Gaps = 132/720 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLI---WGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
           +  IRK S   V  I L +L   F+I    G   ++F  S   ++  +  QKV  + F  
Sbjct: 4   ISTIRKNSALIVVLIALGLL--GFIIQDMMGGQSSIFG-SIQPSIGKINGQKVDLNEFN- 59

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKIL-DNLVSGATLDQFIEDIGLEADHGRVWG 117
             + E  + +   G +            +  L D  V  A +DQ    +G+      +  
Sbjct: 60  --RTESILYAGSTGDIYA---------RRSALWDYFVEKALIDQEAAKLGIGVSKNELID 108

Query: 118 E--------IARSPLFHGKDNKFSHDVFVSRLAREGI-----NEKEY----IDHYTKMLS 160
                    I           + +     S   +          + Y         K   
Sbjct: 109 LQFGPEPSPIIMQRFMDQTTGQLNRQQLNSLKQQISTNTLPATARSYWAIQEQEIVKDRI 168

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEK 219
           +T +V M   G+   + + + +++       + +  +    V  A    S+     + ++
Sbjct: 169 QTKLVNMVSKGLYTPSWVAEMSQKESATMMDLLFTRIPFDAVDNAEVSVSDEDYANYLKE 228

Query: 220 YKDNYRAPE---------------------YKRISYILFDVHEKEKKIEISNDE----LQ 254
               ++  E                      +     L +   +     +  ++    + 
Sbjct: 229 NPGLFKYDEEARKIGLVTFEVKPTKADSLAQRNKIVGLINDWRQAPNDTVFVEQNLGTID 288

Query: 255 AEYEKNK---------------------------------EKYFSPEIRTVEQLVFPNQK 281
             Y K +                                 ++   P+      ++     
Sbjct: 289 GAYVKREGLLQFADSIFNLPIGGIFGPYVEGNAYRAVKLLDRKVIPDSVKSRHILIRPDA 348

Query: 282 ---------EADEAFQSLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADS 328
                      D     ++ GK  F  +A    + G S +   LG  +   +      D 
Sbjct: 349 VTPLAVIKTRLDSIKNVIETGKATFADMALRFGQDGTSTTGGDLGYTALGGMVKP-YNDL 407

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE--KVKE 386
           IF  A++G    V    FG  +  V+  K +   S   V   I   ++ +K +E  + +E
Sbjct: 408 IFFQAEQGKLYTV-ETQFGAHLVEVTGKKVTSNASGVRV-AYIGEVIKPSKETENRRFEE 465

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
             + L        ++   +++ K ++ +      A +   G  + +     +++   FG 
Sbjct: 466 AQRFLNANNKDVETLLAAAKKVKGLTQETSAAVNANEFFLGS-LGSGQQPREIIRWAFGA 524

Query: 447 DDPLSKDHTVALPD------GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
                        D        Y+   +K  +       ++V  D++           ++
Sbjct: 525 QKGQVAPDIYTFTDATEFYTNKYVLAGLKAVLGPGRATADQVKEDIETAV--------IN 576

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN--ENKFFGYDGISQ-VFSGPV 557
            K  +L+ E  K GK  +         + T   +    +   N       ++   F    
Sbjct: 577 RKKGELIAEKLK-GKQVQAAAAQYSVKVDTLRNVRFNQSFLPNNVGSEPRLNAYAFKLKQ 635

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                  I     YVV   + S      + ++  + L+      + +  +   +    ++
Sbjct: 636 GQTSQPIIGANGVYVVNAQSISTPNSATDLNQLKTTLSGNARAQVSNRFMPAFRKSAKIS 695


>gi|217978662|ref|YP_002362809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
           silvestris BL2]
 gi|217504038|gb|ACK51447.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
           silvestris BL2]
          Length = 322

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 67/173 (38%), Gaps = 4/173 (2%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           Y     ++  +  +  K  ++++ ++  Y+   +            ++     +A+   +
Sbjct: 125 YYHEKLLMETLLGQVAKAALTDEAIKKTYDDALKAQKPETEVHARHILVATDADAEAVLK 184

Query: 289 SLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            LK G++F ++A+E  K        LG F+K+ +     A++ F L + G  +  +   F
Sbjct: 185 RLKAGEEFAKVAKEVSKDTSADGGDLGWFTKDKMV-PEFAEAAFKL-EPGQLSAPVKSPF 242

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
           G+ I  V   +     +  EVK  ++  +      E V    K  +   A   
Sbjct: 243 GWHIILVEGKREKPFPALDEVKDQVSRYVVQKAQGELVAGLRKDAKIERAEPE 295



 Score = 38.8 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
            +    + VL+  K G+ F  + K +               ++K    +     F     
Sbjct: 174 ATDADAEAVLKRLKAGEEFAKVAKEVSKDTSADGGDLGWFTKDKMVP-EFAEAAFKLEPG 232

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P+++   + +  V   +  P    D+    +++ + +     ++A L+    + 
Sbjct: 233 QL-SAPVKSPFGWHIILVEGKREKPFPALDEVKDQVSRYVVQKAQGELVAGLRKDAKIE 290


>gi|217969876|ref|YP_002355110.1| SurA domain protein [Thauera sp. MZ1T]
 gi|217507203|gb|ACK54214.1| SurA domain protein [Thauera sp. MZ1T]
          Length = 438

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/431 (12%), Positives = 129/431 (29%), Gaps = 68/431 (15%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           I + +      +  +  A  +V     V  V  + +         +Q    ++++ G  +
Sbjct: 12  IAIGLAATTLALP-VHSAPRAVEVDRIVAVVNNEVITGLELRARIEQTRRQLARQ-GAQL 69

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
             E      L +++L+ L+      Q   +  L  D   +   I R       +NK S D
Sbjct: 70  PPEEV----LQRQLLERLIVERAQLQLARESSLRVDDVTLDRAIERIAS----NNKLSID 121

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVG------MFVGGMRPSNLLLDQAKRFYFEN 189
              + L ++G+    + D     +  T +        + V      N + +    F  + 
Sbjct: 122 QLRATLEKDGVTWSRFRDEIRSEILLTRLREREVDSRIVVTDAEIDNFIANNPDAFSGQE 181

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD----------- 238
            +V +I+L      +        + +  E+     R+ E                     
Sbjct: 182 FAVAHILLRTPEGASPQQV--EAVARRAEQVMARLRSGEDFARVAAEVSDAPDGLQGGSL 239

Query: 239 --------VHEKEKKIE-----ISNDELQAEYEKNKEKYFSP-----------EIRTVEQ 274
                          +       ++  L++    +  +               E      
Sbjct: 240 GWRPLDRLPALFADAVRRMRPGETSPVLRSAAGLHIVRLVDARGGGAAAVQKLEQTRARH 299

Query: 275 LVFPNQK---EADEAFQSLK------KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPD 322
           ++    +   +AD   + L        G  F +LA+     LS      LG  +      
Sbjct: 300 ILIKTSEVLSDADAEARLLAIRERVVNGADFAELAKASSADLSAARGGDLGWLNPGDTV- 358

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                ++ +L + G+ +  +   FG+ +  +   +       +  +      +R  KA +
Sbjct: 359 PEFERAMNAL-RPGEVSAPVRSPFGWHLIQLVERRMQDVTD-ERKRAAARQALRERKAEQ 416

Query: 383 KVKEDYKRLEE 393
             ++  ++L +
Sbjct: 417 AYEDWLRQLRD 427


>gi|224538711|ref|ZP_03679250.1| hypothetical protein BACCELL_03605 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519679|gb|EEF88784.1| hypothetical protein BACCELL_03605 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 712

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 87/733 (11%), Positives = 209/733 (28%), Gaps = 138/733 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     S  V  V  + +    + +  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGESLSAQDYQSLVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   ++    G    ++   +  +  ++  N V+   ++   + +GL      +   I  
Sbjct: 61  EYTEVVKFSRGTSALTDE-ENNQIKDEVWRNYVNNKLIENEAKKLGLSVSKAELQSIIDA 119

Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHY----------TK 157
                 +   F       F  D+    L          +   +Y ++Y           K
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNTAQM-PAQYAEYYQSMYKFWSFLEK 178

Query: 158 MLSRTDVVGMFVG----GMRPSNLLLDQAKRFYFENRSV------------DYIVLNNRH 201
            L +T +   +       +  + +    A     +   +              + + +  
Sbjct: 179 QLVQTRLAEKYQALVSKSLFSNPVEAQDAFNARADQSDMLLAAIPYSSIVDSTVTITDAD 238

Query: 202 VPAIADPSNAVLTQWFEKYKDNYR------APEYK------------------------- 230
           + A  D       Q+ E     +       +PE +                         
Sbjct: 239 LKAAYDKKKEQFKQYVETRNIKFIDVQVTASPEDRDAIQQEVMEYTEQLAGTPGDYSTLV 298

Query: 231 -----RISYILF---------DVHEKEKKIEI----------SNDELQAEYEKNKEKYFS 266
                 + YI           DV  +   + +          +++ + +   K       
Sbjct: 299 RAAGSEVPYIDLYYTSKALPTDVAARLDSVSVGGVYGPYYNATDNTINSF--KKLATASM 356

Query: 267 PEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318
            +     Q+    +  A      D  + ++K G  F ++A++ G++   + IS  ++   
Sbjct: 357 ADSIQYRQIQVVAEDAAKTKTLADSIYTAIKGGADFAEIAKKYGQTGEATWISSANYEGA 416

Query: 319 YIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
            +   +L   ++I +L K       ++ +   +I  V + K         VK      + 
Sbjct: 417 QLDGDNLKYVNTITTLGKNEMTN--LNLAQANIIVQVMDKKA--------VKDKYKVAVI 466

Query: 377 I---TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
                 + E   + Y    +F+A   +++++    +     L  +D          +  I
Sbjct: 467 KRPVEFSKETYSKAYNEFSQFIASNPTLEKMVANAEDAGYKL--LDRNDLYSSEHGIGGI 524

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
              ++ L   F                   + V +   +PA  R L  V   ++ +    
Sbjct: 525 RGTKEALRWAFSAKTGEVSGLYECGESDRMLVVGVSAIVPAGYRPLALVKDQLRLELLRD 584

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF----GYDGI 549
           K       KA +++ +    G    D  K +  ++  + +                   +
Sbjct: 585 K-------KAEKIMADMKAAGATSFDQFKAMPEAVSDSVKHVTFAAPAYVPVLRASEPLV 637

Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
               S         PI+      V +             +      Q M+  +    +  
Sbjct: 638 GAYASIAELNQLSAPIKGNGGVFVLQPYAKDKLNETFNQETEETTLQNMHARMASQFLND 697

Query: 610 LKSQYSVTVHDNL 622
           L  +  V  +  L
Sbjct: 698 LYLKADVKDNRYL 710


>gi|313679080|ref|YP_004056819.1| ppic-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
           profundus DSM 14977]
 gi|313151795|gb|ADR35646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
           profundus DSM 14977]
          Length = 621

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 84/662 (12%), Positives = 171/662 (25%), Gaps = 146/662 (22%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSFINSWKQELGMIS 68
             I   +L   F I  +   LF+  G+       ++ V  Q +     +   +       
Sbjct: 8   ITIIFGILAAAFAIGTI--FLFTPQGNPQQEGRPILYVNGQPINELELMRKAQTNPL--- 62

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
               F +N        +D   L+ +++   L Q      +      V  ++ +      +
Sbjct: 63  ----FTLNPTGVLRPLIDTYFLEQVITLEALRQDAAR--IRVSSSEVKQQVDQ---LRER 113

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
                 + +   L   G  + +  D     L     +                       
Sbjct: 114 LGVTDREGYDRFLQSIGYTDSQLRDEIRTQLRIQKRI----------------------- 150

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
                        +      ++     ++E +K  Y A +  +                 
Sbjct: 151 -----------DELRKKVKLTDEEARFYYELHKGEYAAEDRVKA---------------- 183

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK--S 306
                                    Q+V  +Q  AD+ ++ L  G  F +LA +  K  +
Sbjct: 184 ------------------------RQIVLDDQATADQVYKQLIGGADFAELARQYSKVGA 219

Query: 307 LSDISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
               ++G+      P           +AD++F L K G  T VI     Y I  V    P
Sbjct: 220 EQGGAVGAEPGSSEPGPVTRLVFPTPVADAVFQL-KSGGMTEVIETGGRYYIVKVEEFLP 278

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI----- 413
              V ++EV   + +     K +  V+   + + +   +  + ++I    K   +     
Sbjct: 279 GGDVPYEEVADRVKSDALSVKQNGAVENYIREVRDRAVVKFTEEQIPYEYKNPDVAKVGD 338

Query: 414 ----------------DLPLVDFAGKDVKGKEVAAIPYKEQ------LLFRVFGKDDPLS 451
                            +P +   G              +Q      LL +     +P  
Sbjct: 339 KTIKLADVIQVVFSDQQVPQLIQQGLGELAVSFFFPAATDQLITEELLLQQAEASGEPFI 398

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEE---VLTDVKKDWKTVKTAEEVSSKANQLVL 508
                   D      +     P   R   E       +         + +    A++   
Sbjct: 399 GTRAQKAQDVQLWKTKDVTVTPDEVRAYYEENPARFSIPASATVKTVSFKDKETADKFRE 458

Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ----VFSGPVEMVKCFP 564
           +    G    ++ K LG  +     +N              +       +G   + +   
Sbjct: 459 KLI-AGDPLEELAKGLGGQVSDLGTVNPGSGLPPVVEQLVFATDADYARAGDWGVSEVVE 517

Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFIS-------YLTQMMNKDLLDSVIAYLKSQYSVT 617
           +    +   + V   K    + K  F +                L    I  LK Q  V 
Sbjct: 518 LPGQDNQKTYMVVLVKDKKAEVKKPFEAVKAEAEQLALAAKRAKLAAEWIDQLKQQAGVE 577

Query: 618 VH 619
            +
Sbjct: 578 NN 579



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 83/206 (40%), Gaps = 14/206 (6%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           K + ++ DE++A YE+N  ++  P   TV+ + F +++ AD+  + L  G    +LA+  
Sbjct: 414 KDVTVTPDEVRAYYEENPARFSIPASATVKTVSFKDKETADKFREKLIAGDPLEELAKGL 473

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSL----AKKGD--FTPVIH-----GSFGYVIAH 352
           G  +SD  LG+ +        +   +F+     A+ GD   + V+          Y++  
Sbjct: 474 GGQVSD--LGTVNPGSGLPPVVEQLVFATDADYARAGDWGVSEVVELPGQDNQKTYMVVL 531

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V + K      F+ VK +        K ++   E   +L++   +  ++ ++        
Sbjct: 532 VKDKKAEVKKPFEAVKAEAEQLALAAKRAKLAAEWIDQLKQQAGVENNIVDVLGSL-APK 590

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQ 438
            + P    A      +  A    +  
Sbjct: 591 TEEPATQQAPDQGAPETPAPAEAQPA 616



 Score = 38.4 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 66/207 (31%), Gaps = 21/207 (10%)

Query: 356 IKPSFTVSFQE---VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           + P    ++ E    +  I     +   S K KE   +  E L  G  ++E+++      
Sbjct: 418 VTPDEVRAYYEENPARFSIPASATVKTVSFKDKETADKFREKLIAGDPLEELAKGLGGQV 477

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV---FGKDDPLSKDHTVALPDGS----YMW 465
            DL  V+              P  EQL+F     + +         V LP       YM 
Sbjct: 478 SDLGTVNPGSGLP--------PVVEQLVFATDADYARAGDWGVSEVVELPGQDNQKTYMV 529

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           V +K+      +  E V  + ++     K A+  +   +QL  +   E      +G    
Sbjct: 530 VLVKDKKAEVKKPFEAVKAEAEQLALAAKRAKLAAEWIDQLKQQAGVENNIVDVLGS--- 586

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQV 552
            +  T     +   +         ++ 
Sbjct: 587 LAPKTEEPATQQAPDQGAPETPAPAEA 613


>gi|52143135|ref|YP_083692.1| peptidylprolyl isomerase [Bacillus cereus E33L]
 gi|51976604|gb|AAU18154.1| protein export protein [Bacillus cereus E33L]
          Length = 283

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246
           Y ++ ++ +      S+    +  E+ KD    N++   E   +        + + +I  
Sbjct: 55  YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 114

Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILIKDEKTAKEVKEKVSNGEDFAALA 165

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 166 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 + EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 225 E--LKPYDEVKDQIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKDFK 274



 Score = 40.7 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 52/148 (35%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E ++ G     ++++    +             
Sbjct: 126 DVKDNYKPEMKVSHILIKDEKTAKEVKEKVSNGEDFAALAKQYSEDTGSKEQGGEITGFA 185

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPYDEVKDQ 235

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q+V +  K+
Sbjct: 236 IRKDLEQQRLQDTTGKWKQQVVNDLLKD 263



 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 145 EKTAKEVKEKVSNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 204

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD+    L Q   +D        V+  L    
Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPYDEVKDQIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 264

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 265 DIKVNDK 271


>gi|167766953|ref|ZP_02439006.1| hypothetical protein CLOSS21_01470 [Clostridium sp. SS2/1]
 gi|167710928|gb|EDS21507.1| hypothetical protein CLOSS21_01470 [Clostridium sp. SS2/1]
          Length = 247

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 68/162 (41%), Gaps = 6/162 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295
             + E  K I +S +E +  Y+ N+ ++ + E    + ++  ++ +  E  + +   +  
Sbjct: 84  MALGEAMKDITVSEEEAKEYYKANENQFMAGETVHAKHILVDDEDKCQEILEKIIGEETT 143

Query: 296 FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F   A+E     S      LG+F +  +      D+ F+ A+ G     +   FGY +  
Sbjct: 144 FEDAAKEFSTCPSKEKGGDLGAFGRGQMVK-EFEDAAFA-AEVGHVVGPVKTQFGYHLIK 201

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           V + K + T  +++V   I N +   K ++        L+E 
Sbjct: 202 VEDKKDAETSVYEDVADTIKNIILQQKRNDVYGNKIAELKEK 243


>gi|149175489|ref|ZP_01854110.1| hypothetical protein PM8797T_18534 [Planctomyces maris DSM 8797]
 gi|148845757|gb|EDL60099.1| hypothetical protein PM8797T_18534 [Planctomyces maris DSM 8797]
          Length = 856

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 87/675 (12%), Positives = 207/675 (30%), Gaps = 128/675 (18%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE------ 63
           R    +  +V + + F    +        G+ TVV+     +    +    +        
Sbjct: 94  RGKGTQFAVVGIIIGFF---VGYLYIPKVGAETVVTSTAGDIDMRQYQEMVQNRQIANQF 150

Query: 64  -----LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
                +  ++++        R    G  +++ D+++      +  E + L      V   
Sbjct: 151 IMRSYMASLTEEEQQRPQPPRGAMFGFGREMEDDIILEYLFRKEAEKMNLIVSDDAVSNY 210

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           I+        +NK S   F     + G  E +  D +   L       M    +  +   
Sbjct: 211 IS-----RYTNNKLSRKAFQETCQQLGKTEGQIYDIFRDQLQARLAFQMLRPEVSLTPDQ 265

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNY-----------RA 226
                + +     ++ + L  +        PS+A    +FE YK  +           R 
Sbjct: 266 YWNFYKKFNVREELELVALPVKDFEGEVPAPSDAEKKAFFETYKTVFPGEKGPGSPGLRQ 325

Query: 227 PEYKRISYILFDVHEKEKKI-EISNDELQAEYEKNKEKYFSPEIR----------TVEQL 275
           P+  ++ Y++ D  + EK++  I++ E+ A YE NKE+ +               T  +L
Sbjct: 326 PQKVQVEYLMADYVDTEKQVPPITDKEIAAFYEDNKERLYKNNPIPDLPAGSTVPTAPEL 385

Query: 276 VFPNQKEADEAFQSLK--KGKKFIQ-LAEEQGKSLSDISLGSFSKEYIPDVSLADS---- 328
             P+  + ++  ++ K   G+K  +  A++   + +     + +K   P    AD+    
Sbjct: 386 PAPSGPKTEKPTEAAKPGAGEKPAEKPAKKPAATPAKTE--TPAKPETPAKPKADTKPEP 443

Query: 329 ----IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT----------------------- 361
                    KK + + +   S  +    + + KP+ T                       
Sbjct: 444 ESKPEPKTEKKEESSALAAESITF--VSLLDEKPADTPVVAPKPGAETAGAKPEATTTAP 501

Query: 362 VSFQ-------EVKKDIANQMRITKASEKVKEDY-------KRLEEFL---ALGTSM--- 401
              +       ++K +I +Q+   +  + +K+           L + +     G ++   
Sbjct: 502 PPLEPYRPLNDDLKSEIRDQLLRERTLDLMKDKISEAVLFMNELSDKITNPEEGATVPTP 561

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVA-----AIPYKEQLLFRVFGKDDPLSKDHTV 456
           +E ++  K  +    L+      +  +E++      +   ++     F      + +   
Sbjct: 562 EEATKTLKEYAAKHQLIYNITPMMSAQEMSESEKYPLGTAKEPTINQFAAQPRTAIEQLF 621

Query: 457 ALPDG-SYMWVQIKE-------------SIPARDRKLE--EVLTDVKKDWKTVKTAEEVS 500
             P   +Y+  + ++              + A   + +  E+   + +  K  K      
Sbjct: 622 ETPVNLTYIPYEAEDSFSSGLLCYWKIKHVDATIPEFDDPEIDQQITEQLKLEKARPLAQ 681

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV-----FSG 555
            +  +L  +    G                           + F +   S       FS 
Sbjct: 682 KRGEEL--KKLISGDKEMAAAIEGQTITGKKEGTELSTTTTESFSWMRTSTANASNPFSM 739

Query: 556 PVEMVKCFPIENGLS 570
           P   +       G  
Sbjct: 740 PRPELSSISAVEGAG 754


>gi|317499572|ref|ZP_07957835.1| ppic-type ppiase domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|291559696|emb|CBL38496.1| Parvulin-like peptidyl-prolyl isomerase [butyrate-producing
           bacterium SSC/2]
 gi|316893121|gb|EFV15340.1| ppic-type ppiase domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 247

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 68/162 (41%), Gaps = 6/162 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295
             + E  K I +S DE +  Y+ N+ ++ + E    + ++  ++ +  E  + +   +  
Sbjct: 84  MALGEAMKDITVSEDEAKEYYKANENQFMAGETVHAKHILVDDEDKCQEILEKIIGEETT 143

Query: 296 FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F   A+E     S      LG+F +  +      D+ F+ A+ G     +   FGY +  
Sbjct: 144 FEDAAKEFSTCPSKEKGGDLGAFGRGQMVK-EFEDAAFA-AEVGHVVGPVKTQFGYHLIK 201

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           V + K + T  +++V   I N +   K ++        L+E 
Sbjct: 202 VEDKKDAETSVYEDVADTIKNIILQQKRNDVYGNKIAELKEK 243


>gi|115522177|ref|YP_779088.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
 gi|115516124|gb|ABJ04108.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
          Length = 309

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 9/177 (5%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K   + D ++  YE   ++           ++   + EA    + LKKG  F +LA+++ 
Sbjct: 124 KAAATGDAMKKVYEDAAKQIAGEPEVHARHILVETEDEAKAVVEELKKGADFAELAKKKS 183

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           K         LG F+K+ +     + + F+L + G  +  +   FG+ +  V   +    
Sbjct: 184 KDPGAADGGDLGFFTKDQMV-PEFSTAAFAL-EPGKVSEPVKSQFGWHVIKVEEKRNRKA 241

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLE----EFLALGTSMDEISRREKIVSID 414
             F +VK  I   +     ++ V +     +    +  A    +D+    +K     
Sbjct: 242 PDFDQVKGQIETYVARKAQADYVTKLRAEAKIERLDKPAEPAKVDDAKAGDKPADAK 298



 Score = 40.0 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 40/114 (35%), Gaps = 1/114 (0%)

Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
            + V+E  K+G +F ++ K         +  +           +  +  F+     V   
Sbjct: 162 AKAVVEELKKGADFAELAKKKSKDPGAADGGDLGFFTKDQMVPEFSTAAFALEPGKV-SE 220

Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           P+++   + V KV   +     + D+    +   + +      +  L+++  + 
Sbjct: 221 PVKSQFGWHVIKVEEKRNRKAPDFDQVKGQIETYVARKAQADYVTKLRAEAKIE 274


>gi|254491890|ref|ZP_05105069.1| SurA N-terminal domain family [Methylophaga thiooxidans DMS010]
 gi|224463368|gb|EEF79638.1| SurA N-terminal domain family [Methylophaga thiooxydans DMS010]
          Length = 421

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/403 (12%), Positives = 125/403 (31%), Gaps = 62/403 (15%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V  + +  S  +   +     + Q+   +  SE      L+K++L+ L+      Q  
Sbjct: 25  AVVNDEVILESELMEMQQTVRQQLRQRDAAIPPSEV-----LNKQVLERLIMQRLQLQRA 79

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
           E +G+      +   + +       +N  +   F   L  +G N   + +   + +  T 
Sbjct: 80  EQVGVRVGDDALNAALKQIAN----NNNMNLRQFRDVLEDDGYNFSNFRNTIREEMIITR 135

Query: 164 VV-GMFVGGMRPSNLLLDQA--KRFYFENRSVDY------IVLNNRHVPAIADPSNAVLT 214
           +        +  S   +D     +   E   V+Y      + +     P     +   L 
Sbjct: 136 LRKSQVEDRVVVSEREVDNFLTTQTIQEGGEVEYQLQHILVSMPEAASPEQVQEAEQQLQ 195

Query: 215 QW----------------FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY- 257
           +                 +   ++     E     +        E   ++   E+     
Sbjct: 196 KVQALLDEGGEFSEVAAGYSDGQNALEGGELGWRKHGELPSLFAEVVPDLEVGEVSQALR 255

Query: 258 -----------EKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKKGKKFI 297
                      +K  ++    +      ++            ++   +  Q + KG+ F 
Sbjct: 256 SGSGFHLVRVKDKKSQELHLVKQTLASHILIRANELTSAEQAEERLQQLRQRIAKGENFA 315

Query: 298 QLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +LA     + G ++   SLG  S   +      + + +LA  G+ + V    FG+ +  V
Sbjct: 316 ELARAHSDDTGSAIDGGSLGWTSPGVMV-PEFEEKMNALA-IGEMSDVFESRFGWHLIKV 373

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
            + +       +  +     Q+R  K  E+++   + + +   
Sbjct: 374 YDRREQNMAD-EFKRNKAREQIRQRKIDEELESWLRAMRDEAY 415



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 84/241 (34%), Gaps = 24/241 (9%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
              N+R    + +        + E ++ +S  E+         +        ++ ++   
Sbjct: 119 NFSNFRNTIREEMIITRLRKSQVEDRVVVSEREVDNFLTTQTIQEGGEVEYQLQHILVSM 178

Query: 280 QKEA-----DEAFQSLKK-------GKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVS 324
            + A      EA Q L+K       G +F ++A        +L    LG      +P  S
Sbjct: 179 PEAASPEQVQEAEQQLQKVQALLDEGGEFSEVAAGYSDGQNALEGGELGWRKHGELP--S 236

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK----A 380
           L   +    + G+ +  +    G+ +  V + K         VK+ +A+ + I      +
Sbjct: 237 LFAEVVPDLEVGEVSQALRSGSGFHLVRVKDKKSQE---LHLVKQTLASHILIRANELTS 293

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
           +E+ +E  ++L + +A G +  E++R     +         G    G  V     K   L
Sbjct: 294 AEQAEERLQQLRQRIAKGENFAELARAHSDDTGSAIDGGSLGWTSPGVMVPEFEEKMNAL 353

Query: 441 F 441
            
Sbjct: 354 A 354


>gi|323490390|ref|ZP_08095605.1| foldase protein PrsA [Planococcus donghaensis MPA1U2]
 gi|323396060|gb|EGA88891.1| foldase protein PrsA [Planococcus donghaensis MPA1U2]
          Length = 288

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 80/228 (35%), Gaps = 22/228 (9%)

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE----------------YKRISYILFDV 239
           V+N     A  + +   +      Y++ Y   E                 + +   L   
Sbjct: 63  VVNQEAEKAEVEVTQEEIDAEMAVYEEQYGGAEGLEQALASSGMSIADLEEEMKTYLKVE 122

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                 IEI+++++   +E+NKE +          ++   Q+EADE    L  G  F +L
Sbjct: 123 KIIGPDIEITDEQISTYFEENKETFAQASKVEANHILVETQEEADEVKAKLDDGDDFAEL 182

Query: 300 AEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A E     S      +LG F    +      ++ FSL K  + +  +   +G+ I  V+ 
Sbjct: 183 AAEYSVDTSNAEDGGALGEFGAGEMT-PEFEEAAFSL-KVDEISDPVETDYGFHIIQVTG 240

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
              +   + ++ K+ I   +     + +         E   +   + E
Sbjct: 241 KTEATEANLEDSKEQIKETLFDEALNTQYAAWLAEKTESYNIVNELAE 288


>gi|289434727|ref|YP_003464599.1| protein export protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170971|emb|CBH27513.1| protein export protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 293

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 90/232 (38%), Gaps = 27/232 (11%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--------------RA 226
           +A +  + N  V  +    + +      +   +   ++KY++ Y              + 
Sbjct: 42  EAMKTTYGNEVVQQLTFE-KILEDKYTVTEKEVNAEYKKYEEQYGDSFESTLASSNLTKT 100

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
              + I Y L      E  I++S+  L+  Y+      + P+I TV  ++  ++  A E 
Sbjct: 101 SFKENIKYNLLVQKATEANIDVSDSTLKKYYKT-----WQPDI-TVRHILVDDEATAKEV 154

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIH 343
              LK G+KF  LA+E     +  + G     +     D +   + ++L K  D + ++ 
Sbjct: 155 QTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGTGEMDEAFEKAAYALEKTDDVSGIVK 214

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQMRITKASEKVKEDYKRLE 392
            S+GY +  +       T S  + K     I +Q+     +  +K++ K   
Sbjct: 215 TSYGYHLIQLVKKTDKTTYSKDKAKVKEAYIQSQLTSENMTAALKKELKAAN 266


>gi|298206782|ref|YP_003714961.1| peptidyl-prolyl cis-trans isomerase [Croceibacter atlanticus
           HTCC2559]
 gi|83849414|gb|EAP87282.1| peptidyl-prolyl cis-trans isomerase [Croceibacter atlanticus
           HTCC2559]
          Length = 652

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 87/672 (12%), Positives = 220/672 (32%), Gaps = 101/672 (15%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +     LI G  + +        ++++  + V  S F+  +++ L ++  +    V+   
Sbjct: 7   LFVFCLLIAG--NTIAQELDKQIIMTLDGEPVYASDFVRVYQKNLDLVQDESQKDVD--- 61

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                   + L   +      +   + GL      +         F  +   + +    +
Sbjct: 62  --------EYLKLFIDYRLKLREAYEQGL---DTTLK--------FQREFKTYRNQFARN 102

Query: 140 RLAREGINEKEYIDHYTK---MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
            L    ++E    + Y +    ++ + ++        P + L     + Y + + +    
Sbjct: 103 FLTDNNVSEALVQEAYDRTVNEVNASHILIRVNQNATPEDTL-----KAYSKIKDIREKA 157

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN---DEL 253
           +N R    +A   +   +   +K           ++ Y   +        ++S       
Sbjct: 158 VNGRSFETLAKTYSEDPSA--KKNGGELGWFTALKMVYAFEEQAYTVPVGDVSEPFRTRF 215

Query: 254 QAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
                K  ++  S     V  +         VF  +   +E +  +K+G+ F  LA++  
Sbjct: 216 GYHILKVNDRRASAGEVEVAHIMVSPKPKDTVFNPKDRIEELYLKVKQGEDFGVLAKQFS 275

Query: 305 KSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
              +       L  F    +         FSL K G  T      +G+ I  + +  P  
Sbjct: 276 DDRNSARREGKLDRFGSGKLNSEVFEKKAFSLTKAGQVTEPFETQYGWHIIKLIDRFP-- 333

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVD 419
             SF E++ ++  ++     +  + +     L++  ++G   +  S     V+ D+   +
Sbjct: 334 IPSFNEMRGELEKKVTKDSRANLISDALVAGLKDHYSIGDFSEAKSFFSAYVTKDVKDGN 393

Query: 420 FAGKDV---------------KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           +A  D                K ++ A   Y +Q+   + G  +    +      DG  +
Sbjct: 394 WAISDNSTLDQPLFKLRDSVFKYRDFAKFIYNKQVNKGLSGDKNTAINNWLKEYVDGKVL 453

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE---VSSKANQLVLEY----------- 510
               ++ +   D++   ++++ +         E      +K + L L+            
Sbjct: 454 AYH-RDHLEQEDKEFSNIVSEYRDGLLLFDLMEMNIWNKAKKDTLGLKTYYETNKQNYLW 512

Query: 511 -SKEGKNFRDIGKNLGASLLT---TNQINRMDNENKFFGYDGISQVFSGPVEMV------ 560
             +       +     A  +       ++ +D +++    + ++ +FS     V      
Sbjct: 513 DKRVNVTMAKVNNKTDAKKVRNLMKKGVSEVDVKSQINSDESMTTLFSNGTFNVEDEVLP 572

Query: 561 KCFPIENGLS--------YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
           K   I+ G+S        Y V  + +      +   +    +       L  + IA L++
Sbjct: 573 KKLKIKQGISKVYEEDNYYTVVNIKDVLPAGPKTFKEAKGTIVSDYQDYLEKNWIAALRT 632

Query: 613 QYSVTVHDNLIQ 624
           +YSV ++D+ + 
Sbjct: 633 KYSVNINDDTVN 644


>gi|325479410|gb|EGC82506.1| putative peptidylprolyl isomerase PrsA1 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 248

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 78/160 (48%), Gaps = 5/160 (3%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           +H+  ++I++ + E++A YEKNKE    P +     ++  + +EA +  + +++G +F +
Sbjct: 85  MHKIFEEIKLDDSEIKAYYEKNKENLNPPLLYEASHILVKDLEEASKIKKEIEEGLEFSE 144

Query: 299 LAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
            A++     S     SLG F K  +      + + S+ + G  +  +   FGY +  + N
Sbjct: 145 AAKKYSIDPSKDNGGSLGKFPKGVMVK-EFQEGLDSI-EVGQISEPVKSQFGYHLIKLEN 202

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           I+   T S+ E+K  +  ++ + K  E        +++ +
Sbjct: 203 IENVETPSYDEIKDQVKQRVLMIKRQEAYLNKLDEIKKDI 242


>gi|229171802|ref|ZP_04299374.1| Foldase protein prsA 1 [Bacillus cereus MM3]
 gi|228611699|gb|EEK68949.1| Foldase protein prsA 1 [Bacillus cereus MM3]
          Length = 289

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 85/220 (38%), Gaps = 17/220 (7%)

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY-KDNYRA 226
           F   M+ S            E   +    ++++ V    D     +   F+   K     
Sbjct: 41  FYEQMKNSQTGKQTLNNMVMEKVLIKNYKVDDKEVDKKFDEMKKQVGDQFDTLLKQQGLK 100

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
            E  +         EK  +  I++ EL+  Y+        PEI+    ++  ++  A + 
Sbjct: 101 EETVKNGVRAQLAQEKAIEKTITDKELKDNYK--------PEIK-ASHILVKDEATAKKV 151

Query: 287 FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            + L +GK F +LA++  +          LG F    +      D+ + L KK + +  +
Sbjct: 152 KEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVK-EFEDAAYKL-KKDEVSEPV 209

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
              FGY I  V++IK     SF++ K DI  ++   KA +
Sbjct: 210 KSQFGYHIIKVTDIKEPE-KSFEQSKADIKKEIVQKKAQD 248



 Score = 37.7 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 94/260 (36%), Gaps = 55/260 (21%)

Query: 247 EISNDELQAEYEKNKEKYFSPEI---RTVEQLVFP----NQKEADEAFQSLKK--GKKFI 297
           +I+ +E    YE+ K      +      +E+++      + KE D+ F  +KK  G +F 
Sbjct: 35  DITKEE---FYEQMKNSQTGKQTLNNMVMEKVLIKNYKVDDKEVDKKFDEMKKQVGDQFD 91

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            L ++QG     +  G  ++     ++   +I                            
Sbjct: 92  TLLKQQGLKEETVKNGVRAQ-----LAQEKAI---------------------------- 118

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
              T++ +E+K +   +++ +    K +   K+++E L  G S +E++++    +     
Sbjct: 119 -EKTITDKELKDNYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEK 177

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
               G    GK V         L +    +   S+          Y  +++ +     ++
Sbjct: 178 GGDLGFFGAGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EK 228

Query: 478 KLEEVLTDVKKDWKTVKTAE 497
             E+   D+KK+    K  +
Sbjct: 229 SFEQSKADIKKEIVQKKAQD 248


>gi|27368132|gb|AAN87191.1| LipA [Bacillus cereus]
          Length = 248

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 77/206 (37%), Gaps = 28/206 (13%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 48  YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 107

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 108 EKAIKATVTEKDVKNNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 158

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 159 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 217

Query: 358 PSFTVSFQEVKKDIANQMRITKASEK 383
                 F EVK+ I   +   +  ++
Sbjct: 218 E--LKPFDEVKEKIRKDLEQQRLQDR 241



 Score = 38.8 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 82/248 (33%), Gaps = 44/248 (17%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 37  ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 95

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 96  ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKNN 123

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 124 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 183

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                    L      D   +           Y  +++ +      +  +EV   ++KD 
Sbjct: 184 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKEKIRKDL 233

Query: 491 KTVKTAEE 498
           +  +  + 
Sbjct: 234 EQQRLQDR 241


>gi|224825281|ref|ZP_03698386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
 gi|224602202|gb|EEG08380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
          Length = 258

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 77/178 (43%), Gaps = 12/178 (6%)

Query: 225 RAPEYK-------RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           ++PEY+        ++     + + ++   +S+ +L+AEY+K K ++   +      ++ 
Sbjct: 79  KSPEYRAELENMQTMALASRLIKDFQRSNPVSDAQLRAEYDKIKSQFPEKKSYHARHILV 138

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLA 333
           P + EA     +L+KGK F QLA+E+            LG            ++++  LA
Sbjct: 139 PTEAEAKAVIDALRKGKAFDQLAKEKSIDPGSKNNGGDLGWSEASNFV-APFSEAMTKLA 197

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           K    +  +   FG+ +  + +++       ++++  +  ++   +  + + +   + 
Sbjct: 198 KGQVTSEPVKTEFGWHVIKLDDVRTEAAPPVEQIRPQLEQRIMSGRIEKFISDLKAKA 255


>gi|120556415|ref|YP_960766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
 gi|120326264|gb|ABM20579.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
          Length = 447

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 52/426 (12%), Positives = 134/426 (31%), Gaps = 91/426 (21%)

Query: 19  VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
           ++L +  ++  ++           V  V  + +  S         +G +S + G  +   
Sbjct: 11  ILLTLAMVVLSVTAQAERKLLDRVVAIVDDEVILQSELDARINTIVGRLSAQ-GTGLPPR 69

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
                 L++++LD L+  +   Q  + +G+      +   +A                  
Sbjct: 70  EL----LEQRVLDQLIQESLQLQMADQMGMRISDNELNETLANIA--------------- 110

Query: 139 SRLAREGINEKEYIDHYTKM-LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
                 G+   E+     +  ++           M  S +          + R V     
Sbjct: 111 ---RSNGMTLAEFEGQLAEEGVTYQQAREQIRNEMLTSRV----------QQRRV----- 152

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                      ++  +  + +  + N       R++YI  +V +   +  +         
Sbjct: 153 -----GNRVRVTDREVENYLQAQQANGSTDAEYRLAYIFIEVDDPASEASVDEA------ 201

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGS 314
                                 ++ A    Q +  G+ F ++A    +   +L    +G 
Sbjct: 202 ----------------------RETAQALRQQIANGRDFREVAVAESDASNALEGGDMGW 239

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-------- 366
            S+  +P  SL   +    + G+ + V+  + G+ +  V + +      F +        
Sbjct: 240 RSESQLP--SLVAPVVPDLEVGEPSQVLENNSGFHLVMVMDKRGGEQQQFIQQHRVRHIL 297

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
           V+   +  +   +A ++++E Y++L++    G    +++R      +        G    
Sbjct: 298 VRP--SEAVTDVQAEQRIREIYQQLQD----GADFADLARERSDDPVSGSDGGNLGWVSP 351

Query: 427 GKEVAA 432
           G+ V A
Sbjct: 352 GQMVPA 357


>gi|169343240|ref|ZP_02864251.1| putative foldase protein PrsA [Clostridium perfringens C str.
           JGS1495]
 gi|169298538|gb|EDS80619.1| putative foldase protein PrsA [Clostridium perfringens C str.
           JGS1495]
          Length = 326

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 105/356 (29%), Gaps = 73/356 (20%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL---DKKILDNLVS 95
             +TV +V  +K+      +  K     +  + G     +   +  +    + ++  LV+
Sbjct: 18  DKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVAQQILQQRQSVVQGLVT 77

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L    + +G++     +  ++     F         D F   L  EG  E  + D  
Sbjct: 78  DKVLGIEADKLGIKPSEEEIKKKV--DEQFENIKKGM-GDNFDKALEAEGYTEDTFKDVI 134

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
              +    V    +                                       ++    +
Sbjct: 135 KNQVINQAVQDYII----------------------------------KDVKVTDEDAQK 160

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++++ K  + A +   ++  L   +          +E Q  Y++ +    +         
Sbjct: 161 YYDENKQQFVAKDSGVLTKHLLFEN---------EEEAQKAYDEIQSGKTTF-------- 203

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
                   ++ F   +  K        + K     +LG    E    V          K+
Sbjct: 204 --------NDLFTKYENNKS-------ENKKPIAENLGVVPAENSGLVQEFVDGLKPLKE 248

Query: 336 GDFTPVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+ + +I   FGY I       +    + F EVK  I   ++  K SEK K D  +
Sbjct: 249 GEISKLIKTQFGYHIIQAGATYEKGAQLPFDEVKSQIIQILKQQKDSEKFKADMDQ 304


>gi|150397715|ref|YP_001328182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           medicae WSM419]
 gi|150029230|gb|ABR61347.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           medicae WSM419]
          Length = 284

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 4/147 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++ +E++A Y+K        E      ++   + EA    + L  GK F +LA+ +   
Sbjct: 115 AVTPEEVKARYDKEIAAIPPQEEVKARHILVKTEDEAKAVIKELDAGKNFAELAKAKSTD 174

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            +      LG F+K  +       + F+L K       +   FG+ +  V + +P    +
Sbjct: 175 PNKDEGGDLGYFTKGRMV-PEFETAAFALEKGAYTKTPVKTQFGFHVILVEDKRPQAPPT 233

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
            ++V+  +   +   +  E +    + 
Sbjct: 234 LEQVEPQVRQLVMRDRYLELLNSAKES 260



 Score = 37.3 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 365 QEVKKDIANQMRITKASEKVK---------EDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           +EVK     ++      E+VK         ++ K + + L  G +  E+++  K    + 
Sbjct: 119 EEVKARYDKEIAAIPPQEEVKARHILVKTEDEAKAVIKELDAGKNFAELAKA-KSTDPNK 177

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
                 G   KG+ V       +     F  +        V    G ++ + +++  P  
Sbjct: 178 DEGGDLGYFTKGRMV------PEFETAAFALEKGAYTKTPVKTQFGFHVIL-VEDKRPQA 230

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
              LE+V   V++     +  E ++S      +E 
Sbjct: 231 PPTLEQVEPQVRQLVMRDRYLELLNSAKESTAVEI 265


>gi|289642554|ref|ZP_06474697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Frankia symbiont of
           Datisca glomerata]
 gi|289507642|gb|EFD28598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Frankia symbiont of
           Datisca glomerata]
          Length = 391

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 74/189 (39%), Gaps = 10/189 (5%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
             +++D+L + YE ++  +  P  R +  +V   ++EAD+  +  + G  F  LA E   
Sbjct: 172 ATVTDDQLPSYYESHRADFAVPAQRHLRNIVVATREEADQVVRRARDGADFAALAGETSL 231

Query: 306 S----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                 S   LG  +   + D   A + F++   G     +   +G+ +  V   +P+  
Sbjct: 232 DESTRSSQGDLGFVTASQL-DAEYAKAAFAVP-VGSVFGPVQTRYGWNVGQVLEDRPASQ 289

Query: 362 VSFQEVKKDIANQMRITKA----SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
            SF++VK  + + +R  +A       + +  +  +   A      +        S  LP 
Sbjct: 290 PSFEQVKDQVRDALRSERAVATWRTWLADRIRAADVEYADDYRPADPDAPPPDDSATLPQ 349

Query: 418 VDFAGKDVK 426
              +G    
Sbjct: 350 PGMSGSPAP 358


>gi|229160220|ref|ZP_04288219.1| Foldase protein prsA 2 [Bacillus cereus R309803]
 gi|228623181|gb|EEK80008.1| Foldase protein prsA 2 [Bacillus cereus R309803]
          Length = 285

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 90/228 (39%), Gaps = 17/228 (7%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           V       +  S+       R+    + + Y ++    +      S+  + +   K K+ 
Sbjct: 30  VATAIDSTITKSDFEKQLKDRYG---KDMLYEMMAQDVITKKYKVSDDDVDKELNKVKNQ 86

Query: 224 Y-----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           Y        E  R+       ++ + K+ ++    ++  EK+ + ++ P+I+    ++  
Sbjct: 87  YGDQFKTVLENNRLKDEADFKNQIKFKLAMNEAVKKSVTEKDVKDHYKPDIK-ASHILVS 145

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAK 334
           ++ EA E  + L  G  F +LA+++ + L        LG F+   +       + + L K
Sbjct: 146 DENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFASGTMT-PEFETAAYKL-K 203

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            G  +  +  S GY I  +++ K      + EVK  I   +   + ++
Sbjct: 204 VGQISNPVKSSNGYHIIKLTDKKD--LKPYNEVKDSIRKNLEEERIAD 249


>gi|311067484|ref|YP_003972407.1| molecular chaperone lipoprotein [Bacillus atrophaeus 1942]
 gi|310868001|gb|ADP31476.1| molecular chaperone lipoprotein [Bacillus atrophaeus 1942]
          Length = 284

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 86/218 (39%), Gaps = 17/218 (7%)

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVH 240
             +   E        + ++ +          L   +   K+ Y      +++ Y L    
Sbjct: 54  LTQLVQEKVLAKKYKVTDKEIDKKLKEYKTQLGDQYSALKEQYGEDYLKEQVKYELLTQK 113

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
             E  I++++D+++  +E  K K  +        ++  ++  A+E  + LKKG+KF  LA
Sbjct: 114 AAEDNIKVTDDDVKEYWEGLKGKIHT------SHILVADKDTAEEVEKKLKKGEKFEDLA 167

Query: 301 EEQGKSLS---DISLGSFSKEYI-PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +E     S      LG  SK+    D + + + F L KKG+ +  +   FGY I   +  
Sbjct: 168 KEYSTDSSANNGGDLGWISKDDTQLDATFSKAAFKL-KKGEVSDPVKTQFGYHIIKNTEE 226

Query: 357 KP-----SFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           +         +     ++ +++   +  A EKV +   
Sbjct: 227 RGKYDDMKKDLKKDVKEQKLSDTSAVQAAVEKVIKKAD 264


>gi|297181233|gb|ADI17427.1| parvulin-like peptidyl-prolyl isomerase [uncultured
           Rhodospirillales bacterium HF0070_31K06]
          Length = 293

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 70/173 (40%), Gaps = 8/173 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
              I++ +L+  YE+  +   S E      ++   ++EA E  + L  G+ F ++A+   
Sbjct: 121 SQSITDSKLKVRYEELVKNTPSHEEVRARHILVSTEQEAQEVLKLLAGGQPFEEVAKTHS 180

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSF 360
           K  +      LG F    +     + + F++ K G+ +   +   FG+ +  V + + S 
Sbjct: 181 KDPAASRGGDLGYFRSSDMVKP-FSAAAFAM-KPGETSASPVKTEFGWHVIKVEDRRQSS 238

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYK--RLEEFLALGTSMDEISRREKIV 411
              F  ++  IA  +    A E +        ++ F   G  +   S +++  
Sbjct: 239 VPPFDRLRPQIARDLGRRIAIEILNAARNGSEIQRFSLDGQPLPPPSAQQQPA 291



 Score = 38.4 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 41/121 (33%), Gaps = 17/121 (14%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
            V +V  +++     + +++       Q+    V  E           L+ L+    L  
Sbjct: 37  VVATVNGEQILSGHLLQAFQNLPRKHRQRGLRAVYGEL----------LEQLIENRLLTY 86

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
              +  L      V   +         +++    V+++RL  + I + +    Y +++  
Sbjct: 87  HGRENNLS-GDAEVKALVKE------AEDQIVARVYLNRLISQSITDSKLKVRYEELVKN 139

Query: 162 T 162
           T
Sbjct: 140 T 140


>gi|119385325|ref|YP_916381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
 gi|119375092|gb|ABL70685.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
          Length = 279

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 86/183 (46%), Gaps = 6/183 (3%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEA 286
           E ++ +Y+   V EK    E    EL+A Y++       P        ++   ++EA+  
Sbjct: 93  EIEKRAYLAGSVLEKIAAAEPDEAELKAAYDQAFGGQAEPAVEYNAAHILVKTREEAEAI 152

Query: 287 FQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + L +G  F  LAEE+    S      LG F  E + +   A+++ +L +KG  +  + 
Sbjct: 153 AKQLAEGADFGALAEEKSTDNSGPNKGDLGWFQPEQMVEP-FAEAVKAL-EKGQVSEPVE 210

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             FG+ +  +++ +     +F+E+K+ +A Q+R  K   ++++     +     G ++D 
Sbjct: 211 TQFGWHVIKLNDTREVTPPAFEEIKEQLAVQVRRDKVQAEIEKRVTEAKVEKTEGLAVDL 270

Query: 404 ISR 406
           +++
Sbjct: 271 LNK 273


>gi|126732888|ref|ZP_01748679.1| PPIC-type PPIASE domain protein [Sagittula stellata E-37]
 gi|126706664|gb|EBA05738.1| PPIC-type PPIASE domain protein [Sagittula stellata E-37]
          Length = 329

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++ DE+QA Y+++       +      ++   ++ A+E    +K G  F  +A E+   
Sbjct: 161 AVTEDEVQAVYQRDFVDVDQGKEYNASHILLETKEAAEEVLAEVKGGADFATVAREKSTG 220

Query: 307 LSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S     SLG F    + +     ++ SLA  GD T  +   FG+ +  ++  +      
Sbjct: 221 PSGPNGGSLGWFGAGMMVEP-FQVAVESLA-PGDVTGPVETQFGWHVIKLNETRTQEAPP 278

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
            + V+ +I  +++  K  E +    ++++
Sbjct: 279 LEAVRAEIVQKIQQDKVEEHIDSLMRQMD 307


>gi|288941065|ref|YP_003443305.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium
           vinosum DSM 180]
 gi|288896437|gb|ADC62273.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium
           vinosum DSM 180]
          Length = 282

 Score =  103 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 71/172 (41%), Gaps = 5/172 (2%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           +     +IE S  EL+  Y++ KE+    E +    ++  ++ EA +  + L KG KF +
Sbjct: 112 LSAMADEIEPSEKELKDAYDRIKEQATRTEYK-ARHILLKSEDEAKKLIKQLDKGAKFEE 170

Query: 299 LAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           LA++  +         LG F    +     A+++  L         +   FG+ I  +  
Sbjct: 171 LAKKHSEGPTGKDGGDLGWFDPAQMV-APFAEAVTKLEPGSYTKEPVQTQFGWHIIELQE 229

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
            + +   +F++ K  +   +R  K +E        L E +    +  E +++
Sbjct: 230 TRKAEPPAFEDAKPQLTALVRRQKLAEMRNNAMVELNEEVVRLKAEGEDAKK 281


>gi|159185780|ref|NP_357092.2| peptidyl-prolyl cis-trans isomerase [Agrobacterium tumefaciens str.
           C58]
 gi|159140914|gb|AAK89877.2| peptidyl-prolyl cis-trans isomerase [Agrobacterium tumefaciens str.
           C58]
          Length = 288

 Score =  103 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 4/144 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++NDE++A Y+K        E      ++  ++ EA +  + L  GK F  LA+E+   
Sbjct: 115 AVTNDEVKARYDKEVAALPQEEEIKAAHILVASEDEAKDIIKQLDSGKDFAALAKEKSTD 174

Query: 307 L---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                   LG F K  +      ++ F L K       +   FG+ +  + + + +   +
Sbjct: 175 SNKDDGGDLGWFGKGRMV-PEFEEAAFGLEKGAYTKTPVKTQFGFHVIKLEDKRIAPPPA 233

Query: 364 FQEVKKDIANQMRITKASEKVKED 387
           F++V+  +   +   K    +++ 
Sbjct: 234 FEQVEPQVRQLVMRDKYVALIEKA 257


>gi|303245475|ref|ZP_07331759.1| SurA domain protein [Desulfovibrio fructosovorans JJ]
 gi|302493324|gb|EFL53186.1| SurA domain protein [Desulfovibrio fructosovorans JJ]
          Length = 339

 Score =  103 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/366 (12%), Positives = 105/366 (28%), Gaps = 88/366 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +      +   + +       G        R+  L +++L+++++   +
Sbjct: 38  DRVVAVVNGKLITLFDLDSRVAELVQRTQ---GISFAPGDPRAEELRRQVLESMINDILI 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +Q    + +      +  +I        K N  +   F + LA+EG+  KE+     +  
Sbjct: 95  EQEAARLKINVSETELDSQIDEL----KKKNNLTQAQFQAELAKEGLTLKEFRKRMREDN 150

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            +  ++G                                   V      ++  +  ++EK
Sbjct: 151 MKKRLLGFM---------------------------------VHRKVLVTDDEIRDYYEK 177

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +K           +  +                                   +  ++ P 
Sbjct: 178 HKATLST------TKSILGPKVSGN---------------------------ISFIMVPT 204

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKG 336
           +K+A+E  Q +  G   F   A +          G      + D    L D++ ++   G
Sbjct: 205 KKQAEELRQKIGAGTITFADAARKFSIGPGRDQGGDLGDVQVKDLAPPLRDALTAVP-AG 263

Query: 337 DFTPVIHGSFGYVIAHVSNIK-----------PSFTVSFQEVKKDIANQMRITKASEKVK 385
             +  +      V+  +   K           PS   SF+ V+  I   +   K  +  +
Sbjct: 264 QVSQPVMLDGKAVLLKLRTGKNAAPAKTPQPAPSAGPSFESVRNQIQEMLYKQKFDKLFQ 323

Query: 386 EDYKRL 391
           +    L
Sbjct: 324 DYMDNL 329



 Score = 37.3 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 14/133 (10%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
             +A +L  +       F D  +            +  D + K         + + P   
Sbjct: 205 KKQAEELRQKIGAGTITFADAARKFSIGPGRDQGGDLGDVQVKDLAPPLRDALTAVPAGQ 264

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQE--------------KDKFISYLTQMMNKDLLDS 605
           V    + +G + ++   T     P +               +++    L +     L   
Sbjct: 265 VSQPVMLDGKAVLLKLRTGKNAAPAKTPQPAPSAGPSFESVRNQIQEMLYKQKFDKLFQD 324

Query: 606 VIAYLKSQYSVTV 618
            +  L+S+  + V
Sbjct: 325 YMDNLRSKAVIEV 337


>gi|297521498|ref|ZP_06939884.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           OP50]
          Length = 152

 Score =  103 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 9/156 (5%)

Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            KG  F  LA+E+   +    +   +G      IPD         L +KG  + VI  S 
Sbjct: 1   NKGGDFAALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSV 57

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G++I  + +I+P+   S  EV+ DIA +++  KA +      +++ +  A     + ++ 
Sbjct: 58  GFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAG 115

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
            E+   +      +  KD   +E+   P  + +   
Sbjct: 116 AEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNG 151



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 37/94 (39%)

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
            ++ V++ +  PA+ + L+EV  D+    K  K  +   +   ++    S + ++     
Sbjct: 58  GFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDTESLAGAE 117

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
           +  G     T   ++ +   +         +F+G
Sbjct: 118 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNG 151


>gi|228942849|ref|ZP_04105367.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228816835|gb|EEM62942.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 284

 Score =  103 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 73/214 (34%), Gaps = 22/214 (10%)

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAP------E 228
             L + A +   +   +D I+L+   V    A      L +        Y         E
Sbjct: 47  KKLKETAGKPVLQQVMLDKILLDKYKVTDDEAKKKVEELKKQMGDNFKAYLTQAGAKDEE 106

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
             +         EK  K  ++  E++  Y+                ++  ++K A E  +
Sbjct: 107 DLKTKIKTQIAFEKAVKASVTEKEMKDYYK---------PKLKASHILVKDEKTAKEIKE 157

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGS 345
            L  G+ F  LA++  +       G    E+ P   D    ++ + L + G  +  I  S
Sbjct: 158 KLNNGEDFAALAKQYSEDPGSKEKGGELPEFGPGEMDSKFEEAAYKL-EAGQVSDPIKSS 216

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
            GY I  ++  K      F + K +I  ++   +
Sbjct: 217 HGYHIIKLTEKKE--LKPFDQEKDNIRKELEQKR 248


>gi|295694759|ref|YP_003587997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus tusciae DSM
           2912]
 gi|295410361|gb|ADG04853.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus tusciae DSM
           2912]
          Length = 305

 Score =  103 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/366 (11%), Positives = 101/366 (27%), Gaps = 103/366 (28%)

Query: 33  ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92
           AL     S  V +    +V  +     +K +          ++  +   +     ++L  
Sbjct: 19  ALAGCGSSDVVATFDGGQVHRAELDKQFKLQR--------LLIAPQYPDTPQNRLEVLQQ 70

Query: 93  LVSGA-TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
            +     LDQ  +  G+      +   +A+                              
Sbjct: 71  YIVMHDILDQKAKQEGITVSDKELADTVAQ------------------------------ 100

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI----VLNNRHVPAIAD 207
                    R  ++    G     + L  +      ++  +  +    +L  ++      
Sbjct: 101 --------YRQQLIQYVYGNA---DALNKKMAELGLQDNDLQALARDDILAQKYFAKHLS 149

Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
            S+  +  +++ +  +Y                                           
Sbjct: 150 VSDEEIQAYYKDHPADYT------------------------------------------ 167

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSL 325
            I  V  ++   ++EA++    + KG+ F Q+A+E     S    G   +  +       
Sbjct: 168 -IAKVAHILVKTKQEAEQVEARILKGESFAQIAKEVSLDPSKDQGGELPEGPLSQWVGPF 226

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            D+   L   G  +  +   FG+ I  V + +        +VK  + N++   K  +   
Sbjct: 227 QDAAMKLP-IGQISDPVQTQFGWHILRVDSRR---VEPLSQVKDQVKNKVMQMKEQQWFN 282

Query: 386 EDYKRL 391
           +  +  
Sbjct: 283 QAKQDA 288


>gi|30261164|ref|NP_843541.1| peptidylprolyl isomerase [Bacillus anthracis str. Ames]
 gi|47526319|ref|YP_017668.1| peptidylprolyl isomerase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183995|ref|YP_027247.1| peptidylprolyl isomerase [Bacillus anthracis str. Sterne]
 gi|65318433|ref|ZP_00391392.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Bacillus
           anthracis str. A2012]
 gi|165871813|ref|ZP_02216456.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0488]
 gi|167635351|ref|ZP_02393665.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0442]
 gi|167640186|ref|ZP_02398452.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0193]
 gi|170688111|ref|ZP_02879323.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0465]
 gi|170707650|ref|ZP_02898102.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0389]
 gi|177654152|ref|ZP_02936125.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0174]
 gi|190566666|ref|ZP_03019583.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis Tsiankovskii-I]
 gi|196036478|ref|ZP_03103874.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus W]
 gi|196037489|ref|ZP_03104800.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus NVH0597-99]
 gi|218902237|ref|YP_002450071.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus AH820]
 gi|227816105|ref|YP_002816114.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. CDC 684]
 gi|228926187|ref|ZP_04089262.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932442|ref|ZP_04095323.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229120660|ref|ZP_04249903.1| Foldase protein prsA 1 [Bacillus cereus 95/8201]
 gi|229600239|ref|YP_002865593.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0248]
 gi|254682780|ref|ZP_05146641.1| peptidylprolyl isomerase [Bacillus anthracis str. CNEVA-9066]
 gi|254725568|ref|ZP_05187350.1| peptidylprolyl isomerase [Bacillus anthracis str. A1055]
 gi|254734195|ref|ZP_05191908.1| peptidylprolyl isomerase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740159|ref|ZP_05197851.1| peptidylprolyl isomerase [Bacillus anthracis str. Kruger B]
 gi|254753500|ref|ZP_05205536.1| peptidylprolyl isomerase [Bacillus anthracis str. Vollum]
 gi|254758597|ref|ZP_05210624.1| peptidylprolyl isomerase [Bacillus anthracis str. Australia 94]
 gi|46396834|sp|Q81U45|PRSA1_BACAN RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|30254778|gb|AAP25027.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. Ames]
 gi|47501467|gb|AAT30143.1| peptidylprolyl isomerase PrsA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177922|gb|AAT53298.1| protein export protein prsA [Bacillus anthracis str. Sterne]
 gi|164712390|gb|EDR17924.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0488]
 gi|167511787|gb|EDR87167.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0193]
 gi|167529179|gb|EDR91932.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0442]
 gi|170127425|gb|EDS96300.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0389]
 gi|170668006|gb|EDT18757.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0465]
 gi|172080859|gb|EDT65939.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0174]
 gi|190562218|gb|EDV16186.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis Tsiankovskii-I]
 gi|195990952|gb|EDX54924.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus W]
 gi|196031731|gb|EDX70327.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus NVH0597-99]
 gi|218537167|gb|ACK89565.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus AH820]
 gi|227006959|gb|ACP16702.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. CDC 684]
 gi|228662665|gb|EEL18262.1| Foldase protein prsA 1 [Bacillus cereus 95/8201]
 gi|228827132|gb|EEM72885.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833440|gb|EEM79002.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229264647|gb|ACQ46284.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0248]
          Length = 287

 Score =  103 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + +++ K  Y               E  +         EK  +  I++ EL+
Sbjct: 67  KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA++  +         
Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +      D+ + L KK + +  +   FGY I  V++IK     SF++ K D
Sbjct: 178 DLGFFGAGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234

Query: 371 IANQMRITKASE 382
           I  ++   K+ +
Sbjct: 235 IKKELVAKKSQD 246


>gi|171914423|ref|ZP_02929893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 299

 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 68/188 (36%), Gaps = 16/188 (8%)

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---NQKEAD---- 284
           +       +    + E    ++QA YE N + + S E   V  +       +  A+    
Sbjct: 110 VRMDKMLQNVYSPEPEPGEADIQAYYEANVKHFLSEEQIRVSHISLNLSGARSRAEVYQT 169

Query: 285 --EAFQSLKKGKKFIQLAEEQGKSLS-DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
             E  + +  G  F  LA E   +      LG F K    +       FS+ + G+ +PV
Sbjct: 170 MRELREQVLGGADFDALAAEHNSNKDMSPDLGWFKKGEFME-EFEAIAFSM-RDGEISPV 227

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
                G+ I  +++ K +      EV++ +  ++       K  E  + L+     G  +
Sbjct: 228 FTTQLGFHICRLTDRKAAVPKPLDEVREAVRARILEEYRDGKFNEFLETLK----GGAKI 283

Query: 402 DEISRREK 409
           ++    E 
Sbjct: 284 EDTEPEED 291



 Score = 45.0 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 16/149 (10%)

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           I+  +   ++  +V +  + L E +  G   D ++          P + +  K    +E 
Sbjct: 153 ISLNLSGARSRAEVYQTMRELREQVLGGADFDALAAEHNSNKDMSPDLGWFKKGEFMEEF 212

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
            AI +          +D  +S   T  L    +   ++ +   A  + L+EV   V+   
Sbjct: 213 EAIAFSM--------RDGEISPVFTTQL---GFHICRLTDRKAAVPKPLDEVREAVRA-- 259

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
              +  EE         LE  K G    D
Sbjct: 260 ---RILEEYRDGKFNEFLETLKGGAKIED 285


>gi|228984228|ref|ZP_04144410.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228775515|gb|EEM23899.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 287

 Score =  103 bits (257), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 35/242 (14%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I + E+ +       +  +  M +                  E   +    + ++ V   
Sbjct: 35  ITKDEFYEQMKTQAGKQVLNNMVM------------------EKVLIKNYKVEDKEVDKR 76

Query: 206 ADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
            D +   +   F+   K      E  +         EK  +  I++ EL+  Y+      
Sbjct: 77  FDETKKQVGDQFDTLLKQQGMKEETFKNMLRAQLAQEKAIEKTITDKELKDNYK------ 130

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320
             PEI+    ++  ++  A +  + L +GK F +LA++  +          LG F    +
Sbjct: 131 --PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKM 187

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 D+ + L KK + +  +   FGY I  V++IK     SF++ K DI  ++   KA
Sbjct: 188 VK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKADIKKEIVQKKA 244

Query: 381 SE 382
            +
Sbjct: 245 QD 246


>gi|124516597|gb|EAY58105.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum
           rubarum]
          Length = 340

 Score =  103 bits (257), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 118/358 (32%), Gaps = 71/358 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  V    +  S    S       + ++       E   S  L+ K+L   ++    
Sbjct: 35  DQVMAVVNHHMITKSELDRSLAPTFKKLHKRFRGKAYRELVAS--LEYKLLMKKINERLE 92

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            +  E  GL      +   I        K+N  S     + L+ +G++ + Y     K +
Sbjct: 93  LEEAERQGLTVTDDELDHAIESIMQ---KNNFTSKWQLKTALSEQGMSYRRYKQQLRKQM 149

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +   +V                                    V +    S   + Q++  
Sbjct: 150 TILKLVNQ---------------------------------EVRSTVVISPDEVRQYYLA 176

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           ++D YR P +  +  I   + E   + +I                     +  E +V   
Sbjct: 177 HRDKYRLPPHVTLRDIFLRIPEGATEAQI-----------------QEIRKHGEHIV--- 216

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
                   + LK+G  F+ LA  + +   + +  +LG  +K+ +    L    F++   G
Sbjct: 217 --------RQLKRGDDFVILAGSESEGPNAENGGALGDLTKDQLL-PELVQPAFTIP-PG 266

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
             + +I  S G+ I  V   + +   SF+E+K  I N +      ++++   ++L E 
Sbjct: 267 QTSGLIQTSNGFYIIKVIKREDNSFRSFKELKAQILNDLTKKTTDKRLRIWLEKLREK 324


>gi|150025240|ref|YP_001296066.1| peptidyl-prolyl cis-trans isomerase precursor [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771781|emb|CAL43255.1| Probable peptidyl-prolyl cis-trans isomerase precursor
           [Flavobacterium psychrophilum JIP02/86]
          Length = 658

 Score =  103 bits (257), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 61/407 (14%), Positives = 138/407 (33%), Gaps = 56/407 (13%)

Query: 273 EQLVFPNQKEA--DEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLA 326
            ++    + +A   + +  LK+G+ F  LA +  +  +    G     F+   +      
Sbjct: 247 SEITTTEKAKATIQDIYTKLKQGENFESLASQFSQDKNSAPKGGLLPRFASGQLSSEEFE 306

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV-- 384
           ++ F+L K  +++      FG+ I  +   +P       E++K++  ++R    S  +  
Sbjct: 307 NAAFALTKPNEYSAPFESQFGWHIVKLVEKQP--IKKLNEMEKELDEKIRKDDRSRLITN 364

Query: 385 ---------------KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
                          ++ Y +++  +     + +      +   D  L     K + G +
Sbjct: 365 SLTNKLRKKYTIVRNEKLYAQIKTLVTDKIYVSQWKLPANLKDYDSNLFKIENKSITGTQ 424

Query: 430 VAAIPYKEQ---LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
             +I   +Q   L  +  GK       + V      Y    +++  P     +EE    +
Sbjct: 425 FLSILEAQQKSDLKIKPVGKLVDFVYQNFVDAQMTDYYNDNLEKEFPDFANVIEEYRDGL 484

Query: 487 -------KKDWKTVKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
                  K+ W+  K       K   AN+L  ++    +         G +      +N+
Sbjct: 485 LLFDLMEKEIWEKAKQDTLALKKYYNANKLQYQWKNRAEVLVASSTKEGVAKEARKLLNK 544

Query: 537 MDNENKFFGYDGISQV----------------FSGPVEMVKCFPI--ENGLSYVVFKVTN 578
              ++         +V                F   VE         ++G  Y V KV+ 
Sbjct: 545 DQTDDFIKTTLNTKEVVNVMIKKENYEEGSENFPKKVEFKTGVSEIYKDGEFYFVNKVSK 604

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
                V+  D+    +     + L D+ ++ LK ++ V ++  + +R
Sbjct: 605 IIPASVKTFDEAHGRVVNDYQQYLEDNWVSNLKKEFKVNINQEVFER 651



 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 114/353 (32%), Gaps = 62/353 (17%)

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFE-----------KYKDNYRAPEYKR---ISYILFD 238
           ++  + N+++  + D S   L ++ E             K   +  E       SY    
Sbjct: 40  EFSRVYNKNIDLVKDESQKDLNKYMELFVGYKLKINKANKIGLQNNEKYINELKSYRTQL 99

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----------DEAFQ 288
                   +++   ++  Y ++ ++           ++    + A               
Sbjct: 100 SKNYTSDTKVTKALIEEGYNRSLKEI------RASHILITVDENAVPADTLKAYNQAIDI 153

Query: 289 SLKK--GKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             K   G+KF  LA    ++     +   LG FS  +          ++  KKG  +  +
Sbjct: 154 RKKALVGEKFEDLAVTFSQDPSSKENKGDLGYFS-AFRMIYPFETVAYN-TKKGQISMPV 211

Query: 343 HGSFGYVIAHVSN-------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
              FGY + ++++       I  +  +  +  K + +      KA   +++ Y +L++  
Sbjct: 212 RTKFGYHLIYITDSRENRGEITVAHIMILKSPKAE-SEITTTEKAKATIQDIYTKLKQ-- 268

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
             G + + ++ +        P      +   G+        E+     F    P      
Sbjct: 269 --GENFESLASQFSQDKNSAPKGGLLPRFASGQ-----LSSEEFENAAFALTKPNEYSAP 321

Query: 456 VALPDGSYMWVQIKESIP-----ARDRKLEE-VLTDVKKDWKTVKTAEEVSSK 502
                G +  V++ E  P       +++L+E +  D +    T     ++  K
Sbjct: 322 FESQFG-WHIVKLVEKQPIKKLNEMEKELDEKIRKDDRSRLITNSLTNKLRKK 373



 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 22/196 (11%)

Query: 210 NAVLTQWFEKYKD----NYRA--PEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
           +A +T ++    +    ++     EY+  +        E  +K +     L+  Y  NK 
Sbjct: 455 DAQMTDYYNDNLEKEFPDFANVIEEYRDGLLLFDLMEKEIWEKAKQDTLALKKYYNANKL 514

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS------FS 316
           +Y       V       +  A EA + L          ++Q       +L +        
Sbjct: 515 QYQWKNRAEVLVASSTKEGVAKEARKLLN---------KDQTDDFIKTTLNTKEVVNVMI 565

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           K+   +    +    +  K   + +      Y +  VS I P+   +F E    + N  +
Sbjct: 566 KKENYEEGSENFPKKVEFKTGVSEIYKDGEFYFVNKVSKIIPASVKTFDEAHGRVVNDYQ 625

Query: 377 ITKASEKVKEDYKRLE 392
                  V    K  +
Sbjct: 626 QYLEDNWVSNLKKEFK 641



 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 53/139 (38%), Gaps = 10/139 (7%)

Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN--QINRMDNENKFFGYDGISQV 552
           T E+  +    +  +  K+G+NF  +         +     +       +    +  +  
Sbjct: 251 TTEKAKATIQDIYTKL-KQGENFESLASQFSQDKNSAPKGGLLPRFASGQLSSEEFENAA 309

Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD-----LLDSVI 607
           F+         P E+   + + K+   +  P+++ ++    L + + KD     + +S+ 
Sbjct: 310 FALTKPNEYSAPFESQFGWHIVKLVEKQ--PIKKLNEMEKELDEKIRKDDRSRLITNSLT 367

Query: 608 AYLKSQYSVTVHDNLIQRY 626
             L+ +Y++  ++ L  + 
Sbjct: 368 NKLRKKYTIVRNEKLYAQI 386


>gi|206603474|gb|EDZ39954.1| Putative peptidyl-prolyl cis-trans isomerase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 324

 Score =  103 bits (257), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 78/183 (42%), Gaps = 15/183 (8%)

Query: 212 VLTQWFEKYKDNYRAPEY------KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
            +  +   +   +  P+       ++  ++           +IS    ++ Y+ ++  + 
Sbjct: 113 EIMDYLNNH---FLQPDKSLETFARKALFLQKTAKALAPLPDISVSTERSFYKNHQNLFR 169

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPD 322
                 V+ +V   Q+EA+    +L KG  F +LA+ +    ++ S   +  + +  +P 
Sbjct: 170 VSRQAIVDHIVVAKQEEAESIRDALLKGSSFGKLAKLESLGMEASSGGRMKPYPQGTMPP 229

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
               D++F++ K G+ +PV+  S+GY +  +    P  T+ F   K  I  ++   K  +
Sbjct: 230 P--FDTVFTM-KPGEISPVLSSSYGYHLFRLEKFIPKHTLPFSMEKNWIKKKLTREKRQK 286

Query: 383 KVK 385
            ++
Sbjct: 287 VLQ 289


>gi|54288331|gb|AAV31619.1| predicted parvulin-like peptidyl-prolyl isomerase [uncultured alpha
           proteobacterium EBAC2C11]
          Length = 289

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 61/149 (40%), Gaps = 4/149 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++++  ++  Y+       S E  T   ++   + EA +   SL  G  F +LA  +   
Sbjct: 121 DVTDAAIEKAYKTFVADTASREQVTAAHILVATEDEAKKIIASLAGGADFAELARSKSTG 180

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S     SLG F +  +   +  ++ F+L      T  +   FG+ +  V + + +   +
Sbjct: 181 PSGPNGGSLGKFGRGQMV-PAFENAAFALEDGKITTQPVQTQFGWHVIKVESKEIAPAPT 239

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +++++ +   +        ++E   + E
Sbjct: 240 IEDMREQLVQTLSTQALGRVLEELRAKQE 268



 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 46/132 (34%), Gaps = 1/132 (0%)

Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
           ++             +A +++   +  G +F ++ ++        N  +           
Sbjct: 141 REQVTAAHILVATEDEAKKIIASLA-GGADFAELARSKSTGPSGPNGGSLGKFGRGQMVP 199

Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
              +  F+     +   P++    + V KV + ++ P    +     L Q ++   L  V
Sbjct: 200 AFENAAFALEDGKITTQPVQTQFGWHVIKVESKEIAPAPTIEDMREQLVQTLSTQALGRV 259

Query: 607 IAYLKSQYSVTV 618
           +  L+++  + +
Sbjct: 260 LEELRAKQEIRL 271


>gi|315304396|ref|ZP_07874697.1| peptidylprolyl isomerase PrsA1 [Listeria ivanovii FSL F6-596]
 gi|313627234|gb|EFR96066.1| peptidylprolyl isomerase PrsA1 [Listeria ivanovii FSL F6-596]
          Length = 245

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 31/242 (12%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY------------RAPEYKR--ISYILFDVHEKEKKIE 247
           +      ++  +   F+KYK  Y               E  +  + Y L      E   +
Sbjct: 12  LGDKYKVTDEQVNSEFKKYKSQYGDQFDAVLAQSGLTEETFKSQLKYNLLVQKATEANTD 71

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  Y+      + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     
Sbjct: 72  TSDKALKEYYKT-----WQPDI-TVSHILVADEAKAKEVEQKLKDGAKFADLAKEYSTDT 125

Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G     + P   D +   + ++L  KGD +  +   +GY I  +   KP+   ++
Sbjct: 126 ATKDNGGELAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTY 183

Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            + KK +       Q+      + +K++YK     +     + +  +     +      D
Sbjct: 184 DKDKKAVKESYLQSQLTTENMQKTLKKEYKDANVKVED-KDLKDAFKDYDGSAKKEESTD 242

Query: 420 FA 421
            +
Sbjct: 243 SS 244


>gi|154684591|ref|YP_001419752.1| YacD [Bacillus amyloliquefaciens FZB42]
 gi|154350442|gb|ABS72521.1| YacD [Bacillus amyloliquefaciens FZB42]
          Length = 296

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 10/250 (4%)

Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
              G +E+       K ++R D +         S L      +   E    + + ++N  
Sbjct: 29  QAAGSSEESIATIGDKHITRQDWMKKMEDQYGKSTLEDMINAQVVEELAEKNKLTVSNSE 88

Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYK-RISYILFDVHEKEKKIEISNDELQAEYEKN 260
           +        AV   ++E    +    E++ +I Y +       K I+IS+ E+Q+ Y KN
Sbjct: 89  LDREFLLIKAVDNSFYED--SHITEKEWRDQIRYNILLEELLTKDIDISDKEMQSFYNKN 146

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFS 316
           KE Y   +   +  +V  N+ EAD     LK G  F  +A E+            LG  +
Sbjct: 147 KELYHFDDSYRIRHIVVKNKDEADRVLADLKGGSSFEAVAAERSTDRYTSQYGGDLGFVT 206

Query: 317 --KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
             +E IP   + ++   L +       I  S GY +  +     S T S+ EVK  I  Q
Sbjct: 207 ENQENIPQAYITEAK-KLKEDEWSVEPIKVSSGYAVIQLKEKLKSRTFSYNEVKSQIRRQ 265

Query: 375 MRITKASEKV 384
           + + +  +K 
Sbjct: 266 IAMEQLGDKA 275


>gi|254690082|ref|ZP_05153336.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           6 str. 870]
 gi|256258335|ref|ZP_05463871.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           9 str. C68]
 gi|260755622|ref|ZP_05867970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           6 str. 870]
 gi|260884648|ref|ZP_05896262.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           9 str. C68]
 gi|297247182|ref|ZP_06930900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           5 str. B3196]
 gi|260675730|gb|EEX62551.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           6 str. 870]
 gi|260874176|gb|EEX81245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           9 str. C68]
 gi|297174351|gb|EFH33698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           5 str. B3196]
          Length = 331

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R   E R +  +      +   A    A      ++ K+     E+ R   +  +  
Sbjct: 87  QFARLPVEQRRLAAL---AALIDIKAMVGEAE-KDKLDQTKEFKDRMEFLRERALHNEYF 142

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +     +IS+ +++A Y+K               ++   ++EA+   + L+ G KF  LA
Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202

Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +     G + S   LG FS+  +       + F+L         +   FGY +  + + +
Sbjct: 203 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408
                ++ +VK  I + +   +  E VK+             +E+ +    +  E S ++
Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321

Query: 409 KIVSIDLPL 417
                D P 
Sbjct: 322 DASEDDAPQ 330



 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +     D+++  +   V+   + +    +  ++A   +++  + G  F D+ K       
Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
            ++  +           +     F+         P++    Y V ++ + +       D+
Sbjct: 211 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               +  ++ ++     +  L+    +   D  I++ +
Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308


>gi|84500721|ref|ZP_00998970.1| PPIC-type PPIASE domain protein [Oceanicola batsensis HTCC2597]
 gi|84391674|gb|EAQ04006.1| PPIC-type PPIASE domain protein [Oceanicola batsensis HTCC2597]
          Length = 282

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 59/160 (36%), Gaps = 5/160 (3%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG--- 304
           ++++ +Q  Y+                ++   ++EA    + L  G  F +LA+E+    
Sbjct: 116 VTDEAIQQAYDDTYGNAEPETEYKAAHILVETEEEARAIVEELNGGGDFAELAQEKSTGP 175

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            + +   LG F K  +      +++  + + G  +  +   FG+ +  +   +     + 
Sbjct: 176 SAPNGGELGWFGKGMMV-APFEEAVVGM-EPGAVSEPVQTQFGWHVIQLQETRTKDAPAL 233

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
           ++V+ ++  Q+        +    +          ++D  
Sbjct: 234 EDVRDELRGQVEQQLVKAHIDALVENANVDTTGADAVDPA 273


>gi|228976219|ref|ZP_04136699.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783511|gb|EEM31610.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 279

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 73/214 (34%), Gaps = 22/214 (10%)

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAP------E 228
             L + A +   +   +D I+L+   V    A      L +        Y         E
Sbjct: 42  KKLKETAGKPVLQQVMLDKILLDKYKVTDDEAKKKVEELKKQMGDNFKAYLTQAGAKDEE 101

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
             +         EK  K  ++  E++  Y+                ++  ++K A E  +
Sbjct: 102 DLKTKIKTQIAFEKAVKASVTEKEMKDYYK---------PKLKASHILVKDEKTAKEIKE 152

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGS 345
            L  G+ F  LA++  +       G    E+ P   D    ++ + L + G  +  I  S
Sbjct: 153 KLNNGEDFAALAKQYSEDPGSKEKGGELPEFGPGEMDSKFEEAAYKL-EAGQVSDPIKSS 211

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
            GY I  ++  K      F + K +I  ++   +
Sbjct: 212 HGYHIIKLTEKKE--LKPFDQEKDNIRKELEQKR 243


>gi|49480150|ref|YP_035301.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49331706|gb|AAT62352.1| protein export protein prsA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 287

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + +++ K  Y               E  +         EK  +  I++ EL+
Sbjct: 67  KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA++  +         
Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +      D+ + L KK + +  +   FGY I  V++IK     SF++ K D
Sbjct: 178 DLGFFGAGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234

Query: 371 IANQMRITKASE 382
           I  ++   KA +
Sbjct: 235 IKKELVAKKAQD 246



 Score = 37.3 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             T++ +E+K +   +++ +    K +   K+++E L  G S +E++++    +      
Sbjct: 117 EKTITDKELKDNYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G    GK V         L +    +   S+          Y  +++ +     ++ 
Sbjct: 177 GDLGFFGAGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EKS 227

Query: 479 LEEVLTDVKKDWKTVKTAE 497
            E+   D+KK+    K  +
Sbjct: 228 FEQSKADIKKELVAKKAQD 246


>gi|114704310|ref|ZP_01437218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fulvimarina pelagi
           HTCC2506]
 gi|114539095|gb|EAU42215.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fulvimarina pelagi
           HTCC2506]
          Length = 295

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK- 305
            ++++EL+A YE+       P+      ++   + +A    + L+ G  F +LA E+   
Sbjct: 116 TVTDEELRARYEQEIAAMEPPQEVRARHILLETEDQARTVIEELQNGADFAELATEKSTG 175

Query: 306 --SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
             + +   LG F+   +     +++ F+L         +   FG+ +  V   + +   +
Sbjct: 176 PTAQNGGDLGFFADGQMV-PPFSEAAFALEPGAITEEPVQTQFGWHVIKVEEKRQAEPPA 234

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391
           +++V++ I   +   K    V E  + L
Sbjct: 235 YEQVQEQIRRAVLQEKYVGLVGEAREEL 262


>gi|332716317|ref|YP_004443783.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium sp. H13-3]
 gi|325063002|gb|ADY66692.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium sp. H13-3]
          Length = 287

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 60/144 (41%), Gaps = 4/144 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++N+E++A Y+K        E      ++  ++ EA +  + L  GK F  LA+E+   
Sbjct: 115 AVTNEEVKARYDKEVAALPKEEEIKAAHILVASEDEAKDVIKQLDAGKDFAALAKEKSTD 174

Query: 307 L---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                   LG F K  +      ++ F L K       +   FG+ +  + + + +   +
Sbjct: 175 SNKDDGGDLGWFGKGRMV-PEFEEAAFGLEKGAYTKTPVKTQFGFHVIKLEDKRIAPPPA 233

Query: 364 FQEVKKDIANQMRITKASEKVKED 387
           F++V+  +   +   K    +++ 
Sbjct: 234 FEQVEPQVRQLVMRDKYVALIEKA 257


>gi|306520092|ref|ZP_07406439.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-32g58]
          Length = 323

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/370 (13%), Positives = 119/370 (32%), Gaps = 78/370 (21%)

Query: 33  ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVG---LDK 87
           +L  V  + ++  V   ++    +  +        +   G  ++         G   L+ 
Sbjct: 19  SLMMVGCNKSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKGRNKLEN 78

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGI 146
            I+  +V    L Q  +D GL      V         +   ++K + +  +  ++ + G+
Sbjct: 79  VIISFMVDNELLYQEAKDKGLTPSKSEV------DSKYQELEDKMNLNTSYKEKMDKAGV 132

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
           +++      ++ L+                                     N +      
Sbjct: 133 DKEYLKQEISRDLAIDK----------------------------------NKKAFEDRI 158

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           + S+  +  ++  +K ++   E      ++  + + +K++     E   +   N      
Sbjct: 159 NISDNDMEAYYTSHKKDFNVEEVSASQILISTLDKNKKEVSKDKKEALKKKADN------ 212

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPD 322
                                  +K G+ F  LA++         +   LG F+K+   +
Sbjct: 213 -------------------ILTKIKNGESFESLAKKYSDDKATGKNGGQLGYFTKDD-KN 252

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +F L KK + + V   S+GY I  V++ +     SF E +  I   +   K  E
Sbjct: 253 AEFTKEVFKL-KKNEVSNVFETSYGYHIVKVTDKRE-RQKSFNECQSLIRESILNEKYIE 310

Query: 383 KVKEDYKRLE 392
            +K+  +  +
Sbjct: 311 HIKKLNEDAK 320


>gi|152974691|ref|YP_001374208.1| peptidylprolyl isomerase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152023443|gb|ABS21213.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus cytotoxicus
           NVH 391-98]
          Length = 285

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 30/222 (13%)

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI--- 246
           + V Y ++    +      SN  + + F+K K+ +       +        +  K     
Sbjct: 53  KDVLYEMMAQDIMTKKYKVSNEAVNKEFKKAKEQFGDQFKAVLESNRLKDEDDFKNQIRF 112

Query: 247 ----------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                      I+  +++A Y+        PEI+    ++  N+++A+E  + L +G  F
Sbjct: 113 KLAMEQAIKESITEKDIKANYK--------PEIK-ASHILVNNEEKANEIKKKLDEGASF 163

Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            +LA+++ +          LG F    +      ++ + L K G+ +  I  S+GY I  
Sbjct: 164 EELAKQESEDPGSKEKGGDLGYFGPGKMA-PEFEEAAYKL-KVGEISKPIKSSYGYHIIK 221

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +++ K      + EVK  I   +   + +++       L EF
Sbjct: 222 LTDKKE--LKPYNEVKDSIRKNLEKERIADQAIHQKILLNEF 261


>gi|313622749|gb|EFR93091.1| foldase protein PrsA [Listeria innocua FSL J1-023]
          Length = 291

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 26/207 (12%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247
           +      S+  + + F++YK  Y                    ++ Y L      E   +
Sbjct: 62  LGDKYKVSDEDVDKKFKEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANAD 121

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  Y+      + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     
Sbjct: 122 TSDKALKEYYKT-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175

Query: 308 SDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G     +     D +   + ++L  KGD +  +   +GY I  +   KP+   +F
Sbjct: 176 ATKENGGQLAPFGSGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233

Query: 365 QEVKKDIANQ-MRITKASEKVKEDYKR 390
            + KK +    +     +E +++  K+
Sbjct: 234 DKDKKAVKESYLASQLTTENMQKTLKK 260


>gi|312879532|ref|ZP_07739332.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminomonas
           paucivorans DSM 12260]
 gi|310782823|gb|EFQ23221.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminomonas
           paucivorans DSM 12260]
          Length = 297

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 65/145 (44%), Gaps = 6/145 (4%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS- 308
           +  L+  Y+ +++++   E   V  ++  ++  A +A  ++  G  F + A EQ +  + 
Sbjct: 135 DQTLKRYYDAHRDQFVQAEAVHVRHILTEDEASARKALLAVLGGADFAKTAAEQSRDKAT 194

Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 L    +   P  +  D +FSL K       +   FG+ +  V   + +  +SF+
Sbjct: 195 AERGGDLEWVERGQTPK-AFEDLVFSLRKD-AVGGPVKTDFGWHVVQVLEKRAARALSFE 252

Query: 366 EVKKDIANQMRITKASEKVKEDYKR 390
           E K ++A +++ +   E +K+   +
Sbjct: 253 EAKGEVAQRLQRSYLEETLKKLRGQ 277


>gi|118476746|ref|YP_893897.1| peptidylprolyl isomerase [Bacillus thuringiensis str. Al Hakam]
 gi|225863116|ref|YP_002748494.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB102]
 gi|229090207|ref|ZP_04221455.1| Foldase protein prsA 2 [Bacillus cereus Rock3-42]
 gi|229183467|ref|ZP_04310692.1| Foldase protein prsA 2 [Bacillus cereus BGSC 6E1]
 gi|118415971|gb|ABK84390.1| protein export protein [Bacillus thuringiensis str. Al Hakam]
 gi|225789473|gb|ACO29690.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB102]
 gi|228600051|gb|EEK57646.1| Foldase protein prsA 2 [Bacillus cereus BGSC 6E1]
 gi|228693143|gb|EEL46856.1| Foldase protein prsA 2 [Bacillus cereus Rock3-42]
          Length = 285

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 76/206 (36%), Gaps = 30/206 (14%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240
           Y ++    +      S+  + +  +K K+ Y             +     +         
Sbjct: 57  YEMIAQDVITKKYKVSDDDVEKEVQKVKNQYGDQFTAVLENNRLKDEADFKKQIKFKLAM 116

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
            +  K  ++  E++A Y+        PEI+    ++  ++ EA E  + L  G  F +LA
Sbjct: 117 NEAIKKSVTEKEVKAHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167

Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +++ + L        LG F+   +       + + L K G  +  +    GY I  +++ 
Sbjct: 168 KQESQDLLSKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVKSPNGYHIIKLTDK 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382
           K      + EVK  I   +   + ++
Sbjct: 226 KE--LKPYDEVKDSIRKNLEEERIAD 249



 Score = 38.0 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           EVK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 EVKAHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+     P  E   +++          + V  P+G Y  +++ +      +  +EV   
Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVKSPNG-YHIIKLTDKKE--LKPYDEVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  + A+
Sbjct: 238 IRKNLEEERIAD 249


>gi|206603473|gb|EDZ39953.1| Putative peptidyl-prolyl cis-trans isomerase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 340

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/383 (16%), Positives = 128/383 (33%), Gaps = 73/383 (19%)

Query: 16  IFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           IFL   L + FL  G +     +     +  V    +  S    S       + ++    
Sbjct: 11  IFLSATLLLSFLQAGTARGERVLV-DQVMAVVNHHMITKSELDRSLAPTFKKLHKRFRGK 69

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
              E   S  L+ K+L   ++     +  E  GL      +   I        K+N  S 
Sbjct: 70  AYRELVAS--LEYKLLMKKINERLELEEAERQGLTVTDDELDHAIESIMQ---KNNFTSK 124

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
               + L+ +G++ + Y     K ++   +V                             
Sbjct: 125 WQLKTALSEQGMSYRRYKQQLRKQMTILKLVNQ--------------------------- 157

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
                  V +    S   + Q++  ++D YR P +  +  I   + E   + +I      
Sbjct: 158 ------EVRSTVVISPDEVRQYYLAHRDKYRLPPHVTLRDIFLRIPEGATEAQI------ 205

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDIS 311
                          +  E ++           + LK+G  F+ LA  + +   + +  +
Sbjct: 206 -----------QEIRKHGEHIL-----------RQLKRGDDFVILAGSESEGPNAENGGA 243

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           LG  +K+ +    L    F++   G  + +I  S G+ I  +   + +   SF+E+K  I
Sbjct: 244 LGDLTKDQLL-PELVQPAFTIP-PGQTSGLIQTSNGFYIIKIIKREDNSFRSFKELKSQI 301

Query: 372 ANQMRITKASEKVKEDYKRLEEF 394
            N +      ++++   ++L E 
Sbjct: 302 LNDLTKKTTDKRLRIWLEKLREK 324


>gi|310657790|ref|YP_003935511.1| foldase lipoprotein [Clostridium sticklandii DSM 519]
 gi|308824568|emb|CBH20606.1| putative foldase lipoprotein (Late stage protein export
           lipoprotein) precursor [Clostridium sticklandii]
          Length = 354

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/424 (13%), Positives = 130/424 (30%), Gaps = 99/424 (23%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            K  L ++    +I+ L+    + S +     V   ++ +S +  +              
Sbjct: 1   MKKLLSLIMSSLMIFSLAACSNTASANEWAAKVNDVEISYSDYEKNL------------- 47

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                      + K+I                         V  +I       GK     
Sbjct: 48  ---------AIIKKQI----------------------EATVGADIWTQDSGQGK----- 71

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
              +   L           D   + L    ++         + +  D+ ++ + + +   
Sbjct: 72  --TYNEILK----------DQVLEKLIEDQLILAEAKKENIT-VDADEFEKEFTQFKEQV 118

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
             + +          ++  L +  E     +   E               +K   S ++L
Sbjct: 119 KSLPDYETFLKEEGITDEFLKKQLETDTIVFEYKEK------------FMEKNTPSEEDL 166

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPN----------------QKEADEAFQSLKKGKKFI 297
           +  Y+ N+E Y   E++    ++                   +KEA+     +  G+ F 
Sbjct: 167 KKYYDDNQENYNVNEVK-ASHILLKTVDENFVPLPEDKIAEIKKEAEAVLAKVNSGEDFA 225

Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E  +     ++   LG F+K  +      D  FSL +    + ++  ++GY I  V
Sbjct: 226 VLAKEYSQDEASAVNGGDLGFFAKGVMVK-EFEDVAFSL-EPNQVSDLVETTYGYHIIKV 283

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
              K +    F++VK++I N++   K+        K   +      ++ +     K  S 
Sbjct: 284 FE-KKNEVTPFEDVKENIKNELA-QKSYLDFVASLKESAKIEKNDAALKKADEESKSESQ 341

Query: 414 DLPL 417
           +   
Sbjct: 342 NEEQ 345


>gi|297622327|ref|YP_003703761.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera
           radiovictrix DSM 17093]
 gi|297163507|gb|ADI13218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera
           radiovictrix DSM 17093]
          Length = 641

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/401 (13%), Positives = 113/401 (28%), Gaps = 98/401 (24%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSV---SGSSTVVSVGRQKVPFSSFINSWKQE 63
           K + T +  +  + L V  +I      LF       +   + V  Q +            
Sbjct: 5   KQTNTVILWLIAIALLVSMVIAFTPGTLFGGAQPQQAEAALLVNGQPIRTVD-------- 56

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
           +        F    E   +  L++ +LD L+    L Q    +     +  V   +    
Sbjct: 57  VARFEATPPFNAVQEGPAAEDLEQVLLDELIDQELLRQAASRVN--VSNAEVRARVNAFR 114

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
              G     +   ++  +   G  ++ +     + L R   +    G +           
Sbjct: 115 EEQGVAGSANDRAYLDLIGSAGYTDESFRALMREQLQRERYLESVAGDL----------- 163

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
                                  + ++  +   FE  +D Y++                 
Sbjct: 164 -----------------------EVTDEEVRAHFEANRDVYQSEP--------------- 185

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
                                         QLV  ++  A++ +     G+ F  LA E 
Sbjct: 186 -------------------------RIVARQLVVTDEGLANDLYARALAGEDFAALAREH 220

Query: 304 GK--SLSDISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
               +    +LG+   E  P          ++AD+ F+L   G  T  I  +  + I  V
Sbjct: 221 STERAEQGGALGAAEGESDPRPVTRVALPTAVADAAFALQGTG-LTEPIEAAGAFYIVSV 279

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
              +P     F+EV++ +       K +   +   + L E 
Sbjct: 280 EAYEPPQPRPFEEVQEQVREDALAAKETGAQEAALRTLREE 320



 Score = 45.0 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 11/173 (6%)

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA---LGTSMDEISRREKIV 411
            +      +  E  +D+        A + V  D     +  A    G     ++R     
Sbjct: 164 EVTDEEVRAHFEANRDVYQSEPRIVARQLVVTDEGLANDLYARALAGEDFAALAREHSTE 223

Query: 412 SIDLP-LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             +    +  A  +   + V  +     +    F        +   A   G++  V ++ 
Sbjct: 224 RAEQGGALGAAEGESDPRPVTRVALPTAVADAAFALQGTGLTEPIEAA--GAFYIVSVEA 281

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
             P + R  EEV   V++D           + A +  L   +E         +
Sbjct: 282 YEPPQPRPFEEVQEQVRED-----ALAAKETGAQEAALRTLREEATIETPAGS 329


>gi|312797257|ref|YP_004030179.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI
           454]
 gi|312169032|emb|CBW76035.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia
           rhizoxinica HKI 454]
          Length = 512

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/422 (11%), Positives = 123/422 (29%), Gaps = 68/422 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   + + ++     L  ++L+ +V     
Sbjct: 103 DRIVAVVNNDVITRRELDLRMGLITRRLQQQGAPLPSPDQ-----LQLQVLNQMVLERIQ 157

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G+  D   +   +AR      + N  S D++ +RL  EG+    +       L
Sbjct: 158 LQRAKEDGIVVDDATLQHTLARL----AQANNMSLDMYRARLEAEGVPWSVFSADARNEL 213

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYF--ENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             + +    V   +  S+  +            R    +   +  + A  +     +   
Sbjct: 214 LLSKLREKEVDSRITVSDAEVANYIASQRGPMQRVQQDLRFEHILIKAALNAPQTEIEAA 273

Query: 217 FEKYKDNYRA----------------------------------PEYKRISYILFDVHEK 242
            +K  +  +                                   PE    +       + 
Sbjct: 274 RQKASELLKRALASENFARLAKDNSQAPDASKGGDLGFRSTSALPEAMTQAASQLRPGQV 333

Query: 243 EKKIEISND--ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286
             ++  + +  E+    ++        E           ++            +++  E 
Sbjct: 334 NPEVLRTPEGFEIVRLVDRRVSSGMGSEAPRLVQTHARHILIRIGEGQPEPAARQKLVEL 393

Query: 287 FQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F   A    + G +     LG  S           ++ +L K G+ +  I 
Sbjct: 394 REQIEAGGDFANFAHTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-KDGEISQPIR 451

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             +GY +  V   + +   S  + ++     +   KA +   +  ++L +   +   +D 
Sbjct: 452 TEYGYHLIQVMGRREAQG-SVAQQQEIARQAIGQRKAEQAYADWLRQLRDSAYVQYKLDG 510

Query: 404 IS 405
            +
Sbjct: 511 PA 512


>gi|47565690|ref|ZP_00236730.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241]
 gi|47557326|gb|EAL15654.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241]
          Length = 283

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240
           Y ++ ++ +      S+    +  E+ KD               +  +  +         
Sbjct: 55  YQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNEDELKEKMKPEIAF 114

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           EK  K  ++  +++  Y+        PE++ V  ++  ++K A E  + +  G+ F  LA
Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165

Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +       G     + P        ++ + L   G  +  +  ++GY I  V++ K
Sbjct: 166 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGKVSEPVKTTYGYHIIKVTDKK 224

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                 F EVK  I   +   +  +   +  +++   L     +    +  K
Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNGLLKDADIKVNDKEFK 274



 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGK 204

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNGLLKDA 264

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 265 DIKVNDK 271



 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 89/263 (33%), Gaps = 44/263 (16%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310
           EL+ +Y ++           +++    +++   +  ++  K G+ F    E+ G    D 
Sbjct: 44  ELRQKYGESTLYQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNED- 102

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                 ++  P+++   +I +                             TV+ ++VK +
Sbjct: 103 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 130

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              +M+++    K ++  K ++E +  G     ++++    +              G+ V
Sbjct: 131 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTV 190

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                 ++     +  D     +         Y  +++ +      +  +EV   ++KD 
Sbjct: 191 ------KEFEEAAYKLDAGKVSEPVKTTY--GYHIIKVTDKKE--LKPFDEVKDSIRKDI 240

Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513
           +  +  +       Q+V    K+
Sbjct: 241 EQQRLQDTTGKWKQQVVNGLLKD 263


>gi|16801386|ref|NP_471654.1| hypothetical protein lin2322 [Listeria innocua Clip11262]
 gi|46396988|sp|Q929F4|PRSA2_LISIN RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|16414834|emb|CAC97550.1| lin2322 [Listeria innocua Clip11262]
          Length = 291

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 26/207 (12%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247
           +      S+  + + F++YK  Y                    ++ Y L      E   +
Sbjct: 62  LGDKYKVSDEDVDKKFKEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANAD 121

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  Y+      + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     
Sbjct: 122 TSDKALKEYYKT-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175

Query: 308 SDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G     +     D +   + ++L  KGD +  +   +GY I  +   KP+   +F
Sbjct: 176 ATKENGGQLAPFGSGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233

Query: 365 QEVKKDIANQ-MRITKASEKVKEDYKR 390
            + KK +    +     +E +++  K+
Sbjct: 234 DKDKKAVKEAYLASQLTTENMQKTLKK 260


>gi|229189238|ref|ZP_04316262.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876]
 gi|228594282|gb|EEK52077.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876]
          Length = 288

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 85/220 (38%), Gaps = 17/220 (7%)

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY-KDNYRA 226
           F   M+ S            E   +    ++++ V    D     L   F+   K     
Sbjct: 40  FYEQMKNSQTGKQTLNNMVMEKVLIKNYKVDDKEVDKKYDEMKKQLGDQFDTLLKQQGLK 99

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
            E  +         EK  +  I++ EL+  Y+        PEI+    ++  ++  A + 
Sbjct: 100 EETVKNGVRASLAQEKAIEKTITDKELKENYK--------PEIK-ASHILVKDEATAKKV 150

Query: 287 FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            + L +GK F +LA++  +          LG F+   +      D+ + L KK + +  +
Sbjct: 151 KEELGQGKSFEELAKQYSEDTGSKEKGGDLGYFTAGKMVK-EFEDAAYKL-KKDEVSEPV 208

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
              FGY I  V++IK     SF++ K DI  ++   K  +
Sbjct: 209 KSQFGYHIIKVTDIKEPE-KSFEQSKADIKKEIVQKKMQD 247



 Score = 38.0 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 95/260 (36%), Gaps = 55/260 (21%)

Query: 247 EISNDELQAEYEKNKEKYFSPEI---RTVEQLVFP----NQKEADEAFQSLKK--GKKFI 297
           +I+ +E    YE+ K      +      +E+++      + KE D+ +  +KK  G +F 
Sbjct: 34  DITKEE---FYEQMKNSQTGKQTLNNMVMEKVLIKNYKVDDKEVDKKYDEMKKQLGDQFD 90

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            L ++QG     +  G  +              SLA++                      
Sbjct: 91  TLLKQQGLKEETVKNGVRA--------------SLAQEKAI------------------- 117

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
              T++ +E+K++   +++ +    K +   K+++E L  G S +E++++    +     
Sbjct: 118 -EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEK 176

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
               G    GK V         L +    +   S+          Y  +++ +     ++
Sbjct: 177 GGDLGYFTAGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EK 227

Query: 478 KLEEVLTDVKKDWKTVKTAE 497
             E+   D+KK+    K  +
Sbjct: 228 SFEQSKADIKKEIVQKKMQD 247


>gi|228944771|ref|ZP_04107134.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228814799|gb|EEM61057.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 287

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + +++ K  Y               E  +         EK  +  I++ EL+
Sbjct: 67  KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA++  +         
Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +      D+ + L KK + +  +   FGY I  V++IK     SF++ K D
Sbjct: 178 DLGFFGAGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234

Query: 371 IANQMRITKASE 382
           I  ++   K+ +
Sbjct: 235 IKKEVVAKKSQD 246


>gi|256059916|ref|ZP_05450102.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae
           5K33]
 gi|261323889|ref|ZP_05963086.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae
           5K33]
 gi|261299869|gb|EEY03366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae
           5K33]
          Length = 328

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 13/183 (7%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE---Q 303
           +IS+ +++A Y+K               ++   ++EA+   + L+ G KF  LA+     
Sbjct: 146 KISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLAKASSTD 205

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           G + S   LG FS+  +       + F+L         +   FGY +  + + +     +
Sbjct: 206 GTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPA 264

Query: 364 FQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRREKIVSID 414
           + +VK  I + +   +  E VK+             +E+ +    +  E S ++     D
Sbjct: 265 YDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKDDASEDD 324

Query: 415 LPL 417
            P 
Sbjct: 325 APQ 327



 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +     D+++  +   V+   + +    +  ++A   +++  + G  F D+ K       
Sbjct: 151 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 207

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
            ++  +           +     F+         P++    Y V ++ + +       D+
Sbjct: 208 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 267

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               +  ++ ++     +  L+    +   D  I++ +
Sbjct: 268 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 305


>gi|311233707|gb|ADP86561.1| SurA domain protein [Desulfovibrio vulgaris RCH1]
          Length = 369

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 112/354 (31%), Gaps = 81/354 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +     V  + + +  F    +    ++   +  V +++      + + +LD+++S   +
Sbjct: 85  NRIAAVVNGEMITY--FDVQAQAAPEILRAGLDPVRDADAEPVRRITRNVLDSMISDILI 142

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E + +      V  E  +      + ++ + + F  +LA++G++     +   + +
Sbjct: 143 SQEAERLKITVQDSEVDNEYRKI----VQRSQLAPEQFERQLAQQGLSADLMRERIRRGI 198

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  ++G+                                  +      +   + +++E 
Sbjct: 199 LRHRLLGLM---------------------------------IARKVVVTRDEIAKYYEA 225

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +K  + +    R+  +                                        +FP 
Sbjct: 226 HKGQFVSGRKVRLGLV----------------------------------------IFPP 245

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGD 337
           + +AD     +K G   F  LA       +  + G        D+S+      S  K GD
Sbjct: 246 RDDADALAAQVKSGAMTFADLAARHSIGPNPQNGGVIGDLLWSDLSMEWRDTLSELKPGD 305

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            + V        +  +         +  +V ++I N +R  K  E+++E   +L
Sbjct: 306 VSRVFLVEGRKAVLQLVASNEGKGQALDDVAEEIENILREPKMQERLQEYIGQL 359


>gi|229131944|ref|ZP_04260809.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST196]
 gi|228651535|gb|EEL07505.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST196]
          Length = 286

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 36/243 (14%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I ++E+ +       +  +  M +                  E   +    ++ + V   
Sbjct: 35  ITKEEFYNQMKTQAGKQVLNNMVM------------------EKVLIKNYKVDEKEVDKK 76

Query: 206 ADPSNAVLTQWFEK-YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
            D     +   F+   K      E  +         EK  +  I++ EL+  Y+      
Sbjct: 77  FDEMKKQVGDQFDTLMKQQGLKEETVKNGVRASLAQEKAIEKTITDKELKENYK------ 130

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320
             PEI+    ++  ++  A +  + L +GK F  LA++  +          LG F+   +
Sbjct: 131 --PEIK-ASHILVKDEATAKKVKEELGQGKSFEDLAKQYSEDTGSKEKGGDLGYFTAGKM 187

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 D+ + + KK + +  +   FGY I  V++IK      F EVK DI   +   K 
Sbjct: 188 VK-EFEDAAYKM-KKDEVSEPVKSQFGYHIIKVTDIKE--QKPFDEVKGDIKKDLVQKKT 243

Query: 381 SEK 383
            + 
Sbjct: 244 QDA 246



 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 46/222 (20%)

Query: 279 NQKEADEAFQSLKK--GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           ++KE D+ F  +KK  G +F  L ++QG     +  G  +              SLA++ 
Sbjct: 69  DEKEVDKKFDEMKKQVGDQFDTLMKQQGLKEETVKNGVRA--------------SLAQEK 114

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
                                   T++ +E+K++   +++ +    K +   K+++E L 
Sbjct: 115 AI--------------------EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELG 154

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
            G S ++++++    +         G    GK V         + +    +   S+    
Sbjct: 155 QGKSFEDLAKQYSEDTGSKEKGGDLGYFTAGKMVKEFEDAAYKMKKDEVSEPVKSQF--- 211

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
                 Y  +++ +      +  +EV  D+KKD    KT + 
Sbjct: 212 -----GYHIIKVTDIKE--QKPFDEVKGDIKKDLVQKKTQDA 246


>gi|229149467|ref|ZP_04277703.1| Foldase protein prsA 2 [Bacillus cereus m1550]
 gi|228634109|gb|EEK90702.1| Foldase protein prsA 2 [Bacillus cereus m1550]
          Length = 282

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249
           Y ++    +       +  + +  EK K  Y    +    +Y L D  + + +I+     
Sbjct: 57  YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116

Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           N+ ++    EK+ + ++ PEI+    ++  ++ EA E    L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDIKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L   G  +  +  S GY +  +++ K      +
Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKA--LKPY 231

Query: 365 QEVKKDIANQMRITKASEKVKED 387
            EVK  I   +   + ++ V   
Sbjct: 232 DEVKDSIRKNLEEERTADPVFSK 254



 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           ++K     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 128 DIKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKK--ALKPYDEVKDS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  +TA+ V SK  +L+ E  K+
Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263


>gi|34499685|ref|NP_903900.1| survival protein surA [Chromobacterium violaceum ATCC 12472]
 gi|81711632|sp|Q7NQB0|SURA_CHRVO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|34105536|gb|AAQ61890.1| survival protein surA precursor [Chromobacterium violaceum ATCC
           12472]
          Length = 429

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/412 (14%), Positives = 126/412 (30%), Gaps = 60/412 (14%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V +  + +        + +  +  +       E      L++++L+ +++    
Sbjct: 29  DRIVAVVNKNVITWQELQARVNEAIKQLEAQKVAPPPREV-----LERQVLEQMITEEVQ 83

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q+    GL  +   V   +A       K NK S     ++LA++GI          + L
Sbjct: 84  LQYAASGGLRIEDAAVDQAVANL----AKQNKLSEAGLKAQLAKDGITLDRLRADIRREL 139

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIV---LNNRHVPAIADPSNAVLTQ 215
           + + +        +  S+  +DQA +        +Y +   L      A A   + +  +
Sbjct: 140 TISRLRDSEVASRVNVSDSEVDQAMKSAQSANRTEYHLASILVAVPERADAKQIDQLSQK 199

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEK-------KIEISNDELQAEYEKNKEKYFSP- 267
             +   D      + ++S    D     K              E     E+ K    +  
Sbjct: 200 VHKAQADLAAGQPFAKVSAAYSDAPNALKGGDMGWRSATSLPQEFVQLLEQMKVGADTDV 259

Query: 268 ------------------------EIRTVEQLVF---------PNQKEADEAFQSLKKGK 294
                                   E      ++            +   D+    + +G 
Sbjct: 260 IRTQQGFFIFKLVDKRSGGAPMMVEQYHPRHILIRTNEAVSEADAKARIDQVRDRIMRGA 319

Query: 295 KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           KF  +A+   E G +     LG  +   +       ++ SL   G  +  +   FG+ + 
Sbjct: 320 KFADMAKLYSEDGSNAKGGDLGWVNMGDLV-PEFEKAMVSLP-IGQVSQPVRTPFGWHLI 377

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
            V   +     S    K  +  Q+R  K  +   +  ++L +   +   +DE
Sbjct: 378 LVEGKRNQDVSS-DHEKMAVKQQIRARKMEQAYTDWVRQLRDSAFVEEHLDE 428



 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 85/273 (31%), Gaps = 35/273 (12%)

Query: 152 IDHYTKMLSRT-DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
                +M++    +     GG+R  +  +DQA     +   +    L  +          
Sbjct: 71  RQVLEQMITEEVQLQYAASGGLRIEDAAVDQAVANLAKQNKLSEAGLKAQLAKDGITL-- 128

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
                      D  RA   + ++       E   ++ +S+ E+    +  +    +    
Sbjct: 129 -----------DRLRADIRRELTISRLRDSEVASRVNVSDSEVDQAMKSAQSANRT--EY 175

Query: 271 TVEQLVFPNQKEADE------------AFQSLKKGKKFIQLAEEQGKS---LSDISLGSF 315
            +  ++    + AD             A   L  G+ F +++     +   L    +G  
Sbjct: 176 HLASILVAVPERADAKQIDQLSQKVHKAQADLAAGQPFAKVSAAYSDAPNALKGGDMGWR 235

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           S   +P   +   +    K G  T VI    G+ I  + + +        E        +
Sbjct: 236 SATSLPQEFVQ--LLEQMKVGADTDVIRTQQGFFIFKLVDKRSGGAPMMVEQYHPRHILI 293

Query: 376 RITKASEK--VKEDYKRLEEFLALGTSMDEISR 406
           R  +A  +   K    ++ + +  G    ++++
Sbjct: 294 RTNEAVSEADAKARIDQVRDRIMRGAKFADMAK 326


>gi|308171963|ref|YP_003918668.1| protein secretion PrsA-like protein [Bacillus amyloliquefaciens DSM
           7]
 gi|307604827|emb|CBI41198.1| putative protein secretion PrsA homolog [Bacillus amyloliquefaciens
           DSM 7]
          Length = 296

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 89/245 (36%), Gaps = 33/245 (13%)

Query: 148 EKEYIDHYTKMLSRTDVVGMFV--GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           E EY     + +  T VV        +  SN  L+         R    I   N      
Sbjct: 56  EDEYGKSTLEDMINTQVVEKLAKKNKLTVSNSELE---------REFLLIKAVNNSFYED 106

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
           +  +                     +I Y +       K I+IS+ E+Q+ Y KNKE Y 
Sbjct: 107 SHITEKEWKD---------------QIRYNILLEELLTKDIDISDKEMQSFYNKNKELYQ 151

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFS--KEY 319
             +   +  +V  +++EAD     LK G  F  +A E+            LG  +  +E 
Sbjct: 152 FDDSYRIRHIVVKSKEEADRVLADLKGGSSFEAVAAERSTDRYTSQYGGDLGFVTENQEN 211

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           IP   + ++  +L +       I  S GY +  +     + T S+ EVK  I  Q+ + +
Sbjct: 212 IPPAYITEAK-NLKENEWSAEPIKVSSGYAVIQLKEKLKARTFSYNEVKSQIRRQIAMDQ 270

Query: 380 ASEKV 384
             +K 
Sbjct: 271 LGDKA 275


>gi|291286199|ref|YP_003503015.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883359|gb|ADD67059.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 318

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 125/387 (32%), Gaps = 100/387 (25%)

Query: 15  KIFLVVLFVPFLIW-------GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
           KI ++ + +   +        G  + L     ++T V++  +++    +           
Sbjct: 5   KILIITIVLCLSLVSCFPGKAGKKNGLTEEEIANTFVTINGERITKDEYE--------AF 56

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
                 V+++E   +  + + +  + +    L Q     G+  D G+    +     F  
Sbjct: 57  ISYSNSVMDTETRTNPAVVEALHKDFIEHRLLLQKAVAEGVVVDEGKFKDIVES---FQT 113

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
              +     F  +L           D   ++L +  ++G F+  +  S++          
Sbjct: 114 IKGQKMLSEFEKQLNMN-------FDSLKELLKQRIIIGKFLEKIADSDI---------- 156

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
                              D S   L  ++E+ K+                        +
Sbjct: 157 -------------------DISEEELKAFYEEKKNEL--------------------NAD 177

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           +S                      ++ +V   +K A  A   +K+G  F ++AE+   + 
Sbjct: 178 VSA--------------------HIQHIVTYEEKAAQNALGLIKQGIPFSEVAEKFSVAP 217

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              +   LG  +    PD  +     +L K G  + ++   +GY I  +  ++    +SF
Sbjct: 218 EKEAGGDLGFINVNEYPD--IFKEALAL-KTGQVSGIMKSDYGYHIFKLLEVQKKSGISF 274

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRL 391
             +KK +  ++   K   KV+E    L
Sbjct: 275 DTLKKKLYAELYGIKQENKVREYIDDL 301


>gi|206977675|ref|ZP_03238567.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus H3081.97]
 gi|206744103|gb|EDZ55518.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus H3081.97]
          Length = 285

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 83/198 (41%), Gaps = 14/198 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249
           Y ++    +      S+  + +  +K K+ Y    +    +  L D  + + +I+     
Sbjct: 57  YEMIAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLAM 116

Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           N+ ++    EK+ + ++ PEI+    ++  ++ EA E  + L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L K G  +  +    GY I  +++ K      +
Sbjct: 176 SKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVTSPNGYHIIKLTDKKE--LKPY 231

Query: 365 QEVKKDIANQMRITKASE 382
            EVK  I   +   + S+
Sbjct: 232 DEVKDSIRKNLEEERISD 249



 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+     P  E   +++      + +          Y  +++ +      +  +EV   
Sbjct: 188 SGR---MAPEFETAAYKL-----KVGQISNPVTSPNGYHIIKLTDKKE--LKPYDEVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  + ++
Sbjct: 238 IRKNLEEERISD 249


>gi|229108722|ref|ZP_04238332.1| Foldase protein prsA 2 [Bacillus cereus Rock1-15]
 gi|228674752|gb|EEL29986.1| Foldase protein prsA 2 [Bacillus cereus Rock1-15]
          Length = 285

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249
           Y ++    +       +  + +  EK K  Y    +    +Y L D  + + +I+     
Sbjct: 57  YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116

Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           N+ ++    EK+ + ++ PEI+    ++  ++ EA E    L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDIKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L   G  +  +  S GY +  +++ K      +
Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKA--LKPY 231

Query: 365 QEVKKDIANQMRITKASEKVKED 387
            EVK  I   +   + ++ V   
Sbjct: 232 DEVKDSIRKNLEEERTADPVFSK 254



 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           ++K     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 128 DIKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKK--ALKPYDEVKDS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  +TA+ V SK  +L+ E  K+
Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263


>gi|323489424|ref|ZP_08094653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planococcus
           donghaensis MPA1U2]
 gi|323396918|gb|EGA89735.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planococcus
           donghaensis MPA1U2]
          Length = 296

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 94/238 (39%), Gaps = 37/238 (15%)

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNY------------RAPEYKR--ISYILFDVH 240
           I+L  + +    + ++  +   ++  K+              +  E  +  I   L    
Sbjct: 57  ILLIEKVLADKYEVTDKEVDAEYDSNKEELGESFDEFLAQNNQTEESYKKVIRLNLLQEK 116

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
              + +E++++E+Q  Y++   +           ++  +++ A+   + L +G  F +LA
Sbjct: 117 ALTEGVEVTDEEIQDYYDRQGTELN------ARHILVADEETANSLKKQLDEGADFAKLA 170

Query: 301 EEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           EE         +  +L  F    +      ++ + L +  + +  +   +G+ I  V   
Sbjct: 171 EENSTDTGSGANGGNLDWFGPGAMV-PEFEEAAYGL-EVDEISEPVASEYGFHIIQVLEK 228

Query: 357 KPSFTVS-FQEVKKDIANQMRITKA---------SEKVKEDYKRLEEFLALGTSMDEI 404
           +        ++ K+++  ++ ++KA         +E +KE   ++++    G  +D+I
Sbjct: 229 RQIEDQPALEDQKEELRTELALSKADQTTLLPKVAELMKEANVKIKDEDLEGA-LDDI 285


>gi|46580310|ref|YP_011118.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46449727|gb|AAS96377.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 348

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 112/354 (31%), Gaps = 81/354 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +     V  + + +  F    +    ++   +  V +++      + + +LD+++S   +
Sbjct: 64  NRIAAVVNGEMITY--FDVQAQAAPEILRAGLDPVRDADAEPVRRITRNVLDSMISDILI 121

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E + +      V  E  +      + ++ + + F  +LA++G++     +   + +
Sbjct: 122 SQEAERLKITVQDSEVDNEYRKI----VQRSQLAPEQFERQLAQQGLSADLMRERIRRGI 177

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  ++G+                                  +      +   + +++E 
Sbjct: 178 LRHRLLGLM---------------------------------IARKVVVTRDEIAKYYEA 204

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +K  + +    R+  +                                        +FP 
Sbjct: 205 HKGQFVSGRKVRLGLV----------------------------------------IFPP 224

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGD 337
           + +AD     +K G   F  LA       +  + G        D+S+      S  K GD
Sbjct: 225 RDDADALAAQVKSGAMTFADLAARHSIGPNPQNGGVIGDLLWSDLSMEWRDTLSELKPGD 284

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            + V        +  +         +  +V ++I N +R  K  E+++E   +L
Sbjct: 285 VSRVFLVEGRKAVLQLVASNEGKGQALDDVAEEIENILREPKMQERLQEYIGQL 338


>gi|313617659|gb|EFR89948.1| foldase protein PrsA [Listeria innocua FSL S4-378]
          Length = 291

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 26/207 (12%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247
           +      S+  + + F++YK  Y                    ++ Y L      E   +
Sbjct: 62  LGDKYKVSDEDVDKKFKEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANAD 121

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  Y+      + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     
Sbjct: 122 TSDKALKEYYKT-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175

Query: 308 SDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G     +     D +   + ++L  KGD +  +   +GY I  +   KP+   +F
Sbjct: 176 ATKENGGQLAPFGSGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233

Query: 365 QEVKKDIANQ-MRITKASEKVKEDYKR 390
            + KK +    +     +E +++  K+
Sbjct: 234 DKDKKAVKESYLASQLTTENMQKTLKK 260


>gi|153007317|ref|YP_001381642.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030890|gb|ABS28658.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 317

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 105/363 (28%), Gaps = 94/363 (25%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
            S      V  V  + +         ++     ++  G  V         L +++LD LV
Sbjct: 29  GSPPAPPAVALVNGEPIGADVLARELREASAGDARGDGGDV---------LRRRLLDELV 79

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
               L Q      +     +V         F     ++    F   LA++ +++ +    
Sbjct: 80  DRTLLLQEARARSIVVGQDQVER------AFLRVRAEYPGTHFDDLLAQQRLSQADLKAR 133

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
               L+   +                                     V      S+A + 
Sbjct: 134 LADQLTVERLFE---------------------------------EQVYPQVQVSDAEIQ 160

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           ++F  +   +  PE                                           V Q
Sbjct: 161 RYFADHAAEFEEPEKV----------------------------------------HVLQ 180

Query: 275 LVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIF 330
           +V  +++EA    + L +  + F ++A +   +        LG   +       + D  F
Sbjct: 181 VVVASKEEALAVREKLRRNPQTFAEVARKSSIAPEGKGGGDLGYIGRGSGF-PEVFDVTF 239

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +L      + V    +G+ I  V + + +   + ++ + DIA ++   K ++  ++  K 
Sbjct: 240 TLPLN-RVSDVTPSPYGFHIFKVVDRRAAQRRTLEQARGDIAAKLAREKRAQVQQDYVKG 298

Query: 391 LEE 393
           L E
Sbjct: 299 LRE 301


>gi|317485407|ref|ZP_07944286.1| SurA domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316923366|gb|EFV44573.1| SurA domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 308

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/377 (12%), Positives = 117/377 (31%), Gaps = 86/377 (22%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           ++   FL++ L  +    + +     V  + +   +F    +     + + +     ++ 
Sbjct: 3   IVSTAFLLFFLITSPVRAAINGVAAVVNGEMIT--AFDLQAETAPEAMRRGLNPKDPNQA 60

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           A    L K  L+ +++   L Q  + + +      V  EI +        NK + + F  
Sbjct: 61  AAIEELTKATLERMINNIILTQEAQRLKISVGDSEVDNEIQQIMS----RNKMTPEEFQR 116

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
           +L  +   EK++ +     + R  ++   VG                             
Sbjct: 117 QLQIQRTTEKDFRERIRSSILRNRLLANMVG----------------------------- 147

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
                    +   +  ++ ++K  +                                   
Sbjct: 148 ----RKVIVTKEEIADYYNQHKQTFM---------------------------------- 169

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQG---KSLSDISLGSF 315
                 + +      +V+P  + A+     ++ GK  F Q A +     ++     +G  
Sbjct: 170 ------NNQKVRFAVIVYPPTENAEAQAARIRSGKLSFEQAARQVSVGPRAQEGGDVGVV 223

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI-AHVSNIKPSFTVSFQEVKKDIANQ 374
               + D +  D +  L K GD + +   + G      + +++     + +E    I   
Sbjct: 224 DWNSL-DPTWQDRLSQL-KPGDVSGLFEVNNGLKGQLKLLSMESGDGQTLEEATPQIERI 281

Query: 375 MRITKASEKVKEDYKRL 391
           +R  K  E+ +E  ++L
Sbjct: 282 LREPKLQERFREYSEQL 298


>gi|227823202|ref|YP_002827174.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           fredii NGR234]
 gi|227342203|gb|ACP26421.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           fredii NGR234]
          Length = 284

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 4/136 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++ +E++A Y+K      + E      ++   + EA    + L  GK F++LA+ +   
Sbjct: 115 AVTKEEVKARYDKEIAAIPAQEEVKARHILVKTEDEAKAIIKELDAGKSFVELAKAKSTD 174

Query: 307 L---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                   LG F+K  +       + F+L K       +   FG+ +  V + +P     
Sbjct: 175 PNKDDGGDLGYFTKGRMV-PEFETAAFALEKGTYTKTPVKSQFGFHVILVEDKRPQAPPP 233

Query: 364 FQEVKKDIANQMRITK 379
            ++V+  +   +   K
Sbjct: 234 LEQVEPQVRQLIMRDK 249



 Score = 38.4 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 17/139 (12%)

Query: 365 QEVKKDIANQMRITKASEKVK---------EDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           +EVK     ++    A E+VK         ++ K + + L  G S  E+++  K    + 
Sbjct: 119 EEVKARYDKEIAAIPAQEEVKARHILVKTEDEAKAIIKELDAGKSFVELAKA-KSTDPNK 177

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
                 G   KG+ V       +     F  +        V    G ++ + +++  P  
Sbjct: 178 DDGGDLGYFTKGRMV------PEFETAAFALEKGTYTKTPVKSQFGFHVIL-VEDKRPQA 230

Query: 476 DRKLEEVLTDVKKDWKTVK 494
              LE+V   V++     K
Sbjct: 231 PPPLEQVEPQVRQLIMRDK 249


>gi|89890152|ref|ZP_01201663.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Flavobacteria bacterium BBFL7]
 gi|89518425|gb|EAS21081.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Flavobacteria bacterium BBFL7]
          Length = 704

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 106/737 (14%), Positives = 226/737 (30%), Gaps = 156/737 (21%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L  IR  S+  +  + + +    F+I GL  +    + +S++ SVG  ++       ++ 
Sbjct: 4   LGKIR--SQGLILILVIALALFAFIIQGLLTS-NGAAKASSLGSVGSTEIDRE----AFG 56

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           + +    Q+ G   ++ +A +   D ++ D     A L+  I + G+E     V  ++  
Sbjct: 57  RRVEATMQQRGAGTSTVQAVNSVWDAEVRD-----AVLNMQINEAGIEVSDEAVKNQVKS 111

Query: 122 S----PLFHGKDNKFSH---DVFVSRLAREGINEKEY------IDHYTKMLSRTDVVGMF 168
                P+F  ++ +FS    + FV+ L       + Y      +++      +T    + 
Sbjct: 112 MYANAPIFLDENGQFSEIKMNTFVADLKNN--QPERYQLWLQDVENAADQSKQTQFFNLL 169

Query: 169 VGGMRP----------------------------------------SNLLLDQAKRFYF- 187
             G+                                          S+ +     +F   
Sbjct: 170 KSGIIGTQAAGEMEYRLANDNRSFTFVNIPYTSIADTEVEISKSEISSYIAKNESKFKSD 229

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAV----LTQWFEKYKDNYRAPEY-------------- 229
             R + Y+V  ++   A      A     L+ + E  ++  R   Y              
Sbjct: 230 AQRDIQYVVFEDKASEADKAKMKADMTKLLSSYEEFNENTNRTETYPGLDKVEDVETFVN 289

Query: 230 ------KRISYILFDVHEKEKKIEISNDELQAE--YEKN--------KEKYFSPEIRTVE 273
                    SY+L        K   + +E      YE          ++K    +    +
Sbjct: 290 SESDVPYDGSYLLTSKLPATAKAIAALEEGATYGPYEDAAYMKISRLEDKKTIMDSVQTK 349

Query: 274 QLVFP-----------NQKEADEAFQSL-----KKGKKF----------IQLAEEQGKSL 307
            ++             ++++A +   S+     +   KF           ++A+  G+ +
Sbjct: 350 HILVAYAGATRSASTRSKEDAKKVADSIFATIGQSNSKFNTKWDYFNENTEIAK--GEDI 407

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
             +     ++ + P  +     F          +   SFGY I H+ + K       + V
Sbjct: 408 GWVVYSGNARNFAPGFTK----FLFENDKGSVGISESSFGYHIIHIQDTKAPT----EAV 459

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
           K  IA   +   AS+   +      +    G +  + +   K  ++D+  V         
Sbjct: 460 K--IATIAKKVDASKATGKQLFTDAQKFQQGAADKDFTEVAKEFTLDVKPVKN--LKAMD 515

Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
           + +  +     ++   F +   +        P+G Y+ VQ+     A     EE    V 
Sbjct: 516 ENLPGLQRNRSIVQWAFKEGTDIGDTERFETPEG-YVIVQLTRKAEAGLMSAEEASATVT 574

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
              +  K A+ +  +                DI    G +      +NR        G +
Sbjct: 575 PILRNKKKAKMIMDQITA---------TEVNDIASAQGLNARAATAVNRKSPTIPGVGEE 625

Query: 548 G--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-VQEKDKFISYLTQMMNKDLLD 604
              +   F          PI       V KVT  +  P +       + +          
Sbjct: 626 PKVVGTAFGLAEGET-SKPIAGEKGVFVVKVTAIENAPDLGSYKADANEVASRTANQATS 684

Query: 605 SVIAYLKSQYSVTVHDN 621
            ++  LK    +T + +
Sbjct: 685 KLVEALKKSIEITDNRS 701


>gi|171910875|ref|ZP_02926345.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 344

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 115/358 (32%), Gaps = 71/358 (19%)

Query: 32  DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
            +  + S +   V V  + V  S    + + +   + +      N + AR   L +  L 
Sbjct: 20  SSAVAQSSNGIAVVVNGKVVTKSEVKEAVEAQ-EQLIRMTVRDPNEQTARLAQLREGALY 78

Query: 92  NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF--SHDVFVSRLAREGINEK 149
            L+    +    + +G       +  +I          + F  + + F+  LA+ G+  K
Sbjct: 79  ALIERQLVLSEFDKLGGSIKPQYIDDDINGI-----VRDNFEGNREKFLMELAKTGMTLK 133

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
           ++ +   KM+  +                                 VL  R    +A P+
Sbjct: 134 KFREQRQKMMVVS---------------------------------VLRARQTKDLAPPT 160

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
            A + +++ K  D +R  +Y + S I          +  S +                  
Sbjct: 161 PAQVEEFYRKNADKFRDKDYIKFSTITI-PKYPIGNVGASPE------------------ 201

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLAD 327
                     +K A+E    +  G  F  LA+   +     S G +   +       +A+
Sbjct: 202 --------SQKKLAEEIRGKVTNGSDFANLAKTYSQDSRAESGGDWGLQERATLSREIAE 253

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
             F+L K G  + V+     Y+I +    +P      ++V+  I   ++  +    V 
Sbjct: 254 VAFAL-KVGGVSRVVEIGGNYMIIYCEAKQPGNMEPLEKVRPQIEKFIQSEQGRNAVN 310


>gi|83591735|ref|YP_425487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83574649|gb|ABC21200.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 308

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 77/170 (45%), Gaps = 8/170 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
             ++++  ++A Y + K ++   +      ++   +  A +A + ++ G  F +LA E  
Sbjct: 119 DEDVTDAAVKARYNEMKAEFKPEKEVHARHILLETEDAAKDAIKKIEGGADFTKLASELS 178

Query: 305 ---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSF 360
               + +   LG F+K+ +     A++ F++ K G+ +       FG+ +  +  ++ + 
Sbjct: 179 TGPSAQTGGDLGFFTKDRMV-APFAEAAFAM-KVGEVSKAPTKTEFGWHVIKIEEVRDTT 236

Query: 361 TVSFQEVKKDIANQMRITKASEKVK--EDYKRLEEFLALGTSMDEISRRE 408
               +E++  I +++      + V   ++  +++ F A G +  E ++  
Sbjct: 237 FPPVEEMESHIRDELANAAVEKNVAGLKESAKVKLFAADGKTTLEEAKAA 286


>gi|253995959|ref|YP_003048023.1| SurA domain-containing protein [Methylotenera mobilis JLW8]
 gi|253982638|gb|ACT47496.1| SurA domain protein [Methylotenera mobilis JLW8]
          Length = 434

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/415 (14%), Positives = 140/415 (33%), Gaps = 64/415 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V +  +      +        + ++      +E   +  L K+IL+ L+S A  
Sbjct: 31  DRIVAIVDQSVITEQELESRIVSLSAQLKKQ-----GTELPEASILRKQILERLISDALQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q+    G++ D  ++   I R      + NK +   F   L ++GI+ +++       +
Sbjct: 86  LQYAAQTGIKVDDMQLDKTIERI----AEQNKMTVREFYDALNQDGISVRKFRSDIRNEI 141

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
           +   +        +  S   +D         N++ D   +++  +    D +   + +  
Sbjct: 142 TIARLREREVESRVNVSESEIDNYLTTQASTNQNQDEYEISHILIRVPEDAATEDVQKAK 201

Query: 218 EKYKDNYRA----------------------------PEYKRISYILFDVHEKEKKIEIS 249
            K  + + A                             +  ++  +  D  +  +K E+S
Sbjct: 202 TKVDEIFAALASGTSFAKVSASFSDAPNALEGGNIGWKQGAQMPALFLDALKAMQKGEVS 261

Query: 250 NDELQAEYEKNKEKYFSP---------EIRTVEQLVFP-----NQKEADE----AFQSLK 291
              L++    +  K             E      ++       ++K+A        + L 
Sbjct: 262 -AALRSPNGFHILKLTDKRGGSSPLIIEQTHARHILIKLSEVMSEKDAKTKMDGIKERLD 320

Query: 292 KGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            G+KF  LA    E G + +   LG  +           ++ SL +  + +  +   FG+
Sbjct: 321 NGEKFEVLARQFSEDGTASNGGDLGWVNPGDTV-PQFEKAMNSL-QPNEISAPVLSPFGW 378

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
            +  V   K    +S +  +     ++R  KA E  ++  + L +   +   +++
Sbjct: 379 HVIQVLERKK-QDMSKEAARLKARQEIRARKADEAYQDWIRELRDRAFVELRLED 432



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/404 (12%), Positives = 135/404 (33%), Gaps = 46/404 (11%)

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           D  V+ + +  I E+E       +     +          S L     +R   +   + Y
Sbjct: 31  DRIVAIVDQSVITEQELESRI--VSLSAQLKKQGTELPEASILRKQILERLISDALQLQY 88

Query: 195 IVLN---------NRHVPAIADPSNAVLTQWFEK-YKD-----NYRAPEYKRISYILFDV 239
                        ++ +  IA+ +   + ++++   +D      +R+     I+      
Sbjct: 89  AAQTGIKVDDMQLDKTIERIAEQNKMTVREFYDALNQDGISVRKFRSDIRNEITIARLRE 148

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAF 287
            E E ++ +S  E+            + +   +  ++    ++A            DE F
Sbjct: 149 REVESRVNVSESEIDNYLTTQASTNQNQDEYEISHILIRVPEDAATEDVQKAKTKVDEIF 208

Query: 288 QSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            +L  G  F +++        +L   ++G      +P +   D++ ++ +KG+ +  +  
Sbjct: 209 AALASGTSFAKVSASFSDAPNALEGGNIGWKQGAQMPAL-FLDALKAM-QKGEVSAALRS 266

Query: 345 SFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
             G+ I  +++ +   +    E    + I  ++    + +  K     ++E L  G   +
Sbjct: 267 PNGFHILKLTDKRGGSSPLIIEQTHARHILIKLSEVMSEKDAKTKMDGIKERLDNGEKFE 326

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
            ++R+      +       G          +P  E+ +  +       ++     L    
Sbjct: 327 VLARQFS----EDGTASNGGDLGWVNPGDTVPQFEKAMNSL-----QPNEISAPVLSPFG 377

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
           +  +Q+ E    +D   E      +++ +  K  E       +L
Sbjct: 378 WHVIQVLERK-KQDMSKEAARLKARQEIRARKADEAYQDWIREL 420


>gi|30019316|ref|NP_830947.1| peptidylprolyl isomerase [Bacillus cereus ATCC 14579]
 gi|229126572|ref|ZP_04255586.1| Foldase protein prsA 2 [Bacillus cereus BDRD-Cer4]
 gi|46396826|sp|Q81GN0|PRSA2_BACCR RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|29894859|gb|AAP08148.1| Peptidyl-prolyl cis-trans isomerase [Bacillus cereus ATCC 14579]
 gi|228656961|gb|EEL12785.1| Foldase protein prsA 2 [Bacillus cereus BDRD-Cer4]
          Length = 285

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249
           Y ++    +       +  + +  EK K  Y    +    +Y L D  + + +I+     
Sbjct: 57  YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116

Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           N+ ++    EK+ + ++ PEI+    ++  ++ EA E    L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L   G  +  +  S GY +  +++ K      +
Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKA--LKPY 231

Query: 365 QEVKKDIANQMRITKASEKVKED 387
            EVK  I   +   + ++ V   
Sbjct: 232 DEVKDSIRKNLEEERTADPVFSK 254



 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKK--ALKPYDEVKDS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  +TA+ V SK  +L+ E  K+
Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263


>gi|46201262|ref|ZP_00208032.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 273

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 74/185 (40%), Gaps = 11/185 (5%)

Query: 231 RISYILFDVHEKEKKI--EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           R+   L      +KK+   I+ + ++A Y++  + +   E      ++   ++ A     
Sbjct: 91  RVEIQLMAQALMQKKVRGAITEEAVKARYDQAVKNFQPQEEVHARHILVETEESARSIIA 150

Query: 289 SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIH 343
            L +G+ F +LA+ + K          LG F +  +     +   F++ + G+ +   + 
Sbjct: 151 DLNRGQDFGELAKSRSKDTGSGAMGGDLGYFVQGAMV-PEFSTVAFAM-RPGEVSKTPVK 208

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA--LGTSM 401
             FGY +  V + + +    + + K  IA Q+      + V +   + +       GT +
Sbjct: 209 TQFGYHVIKVEDKRMATIPPYDQAKPVIARQIADELQEKMVVDLRDKAKIKRFKPDGTPL 268

Query: 402 DEISR 406
           D   +
Sbjct: 269 DAAKK 273



 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 56/148 (37%), Gaps = 11/148 (7%)

Query: 480 EEVLTDVKKDWKTVKTAEEVSSK---------ANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           E V     +  K  +  EEV ++         A  ++ + ++ G++F ++ K+      +
Sbjct: 113 EAVKARYDQAVKNFQPQEEVHARHILVETEESARSIIADLNR-GQDFGELAKSRSKDTGS 171

Query: 531 TNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
                 +          +  +  F+     V   P++    Y V KV + ++  +   D+
Sbjct: 172 GAMGGDLGYFVQGAMVPEFSTVAFAMRPGEVSKTPVKTQFGYHVIKVEDKRMATIPPYDQ 231

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               + + +  +L + ++  L+ +  + 
Sbjct: 232 AKPVIARQIADELQEKMVVDLRDKAKIK 259


>gi|332521072|ref|ZP_08397530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
           5H-3-7-4]
 gi|332043165|gb|EGI79362.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
           5H-3-7-4]
          Length = 676

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 145/408 (35%), Gaps = 54/408 (13%)

Query: 15  KIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
           KI  ++    L   F ++  +  L +      + +V    V  S F+  + + L ++ ++
Sbjct: 31  KIVFLMNFKFLIKCFYLYFATTLLANAQQEEVIFTVEDTPVLASEFLRVYNKNLDLVKEE 90

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
               V+             L   +      Q  + + L+     +         F G   
Sbjct: 91  SQKDVD-----------GYLKLFIEYKLKLQEAKALNLDKKPSYIRE-------FQG--- 129

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTK---MLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
            + + +  + L    + +    + Y +    +  + ++        P + L    +    
Sbjct: 130 -YKNQLSKNYLNDSKVTDALVEEAYARLANEIKASHILVKIDQDASPKDTLAAYNEILKL 188

Query: 188 ENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
             R V   Y  +    V          L  +F             ++ Y   +     K 
Sbjct: 189 RERVVQEGYKKV-QSDVHNGKTIFAEDL-GYFSA----------FKMVYPFENAAYNTKV 236

Query: 246 IEIS-NDELQAEYEKNK--EKYFSPEIRTVEQLVFP-NQKEADEAFQSLKKGKKFIQLAE 301
            +IS   + +  Y   K  +K  S    TV  ++   ++++  E ++ L++G++F  LA+
Sbjct: 237 NDISMPFKTRFGYHVVKVFDKRKSQGEITVAHIMIENDEEKIKEIYKRLEQGEQFQALAK 296

Query: 302 EQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +  +  S  S G     FS   +         F++   GD++      FG+ I  + N K
Sbjct: 297 QFSEDKSSSSKGGELKPFSGGQLSSPEFEAVAFAIKNPGDYSKPFKTQFGWHIVKLINKK 356

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKE-DYKRLEEFLALGTSMDEI 404
           P     F+E+K ++ N++R    S+ + +   K L+E   +  + D +
Sbjct: 357 P--LPDFKEIKAELINKIRRDSRSKVINDSRVKALKEKYKITKNPDAL 402



 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 69/181 (38%), Gaps = 5/181 (2%)

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND--ELQAEYEKNKEKYFSPEIRT 271
                  KD  +  E  +   +LFD+ E E      ND   ++  Y K+K+ YF  +   
Sbjct: 481 QNLINDNKDYAQIVEEYKDGLLLFDLMETEIWNAAKNDTLAVKTFYSKHKQNYFYKKRIN 540

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
                   +++  +  + LK+ +    + +E   + ++I +   S E   +         
Sbjct: 541 AIVASSAKKEDIKKVAKLLKQNQPIEAIKKEVN-TNNEIKVSFTSGELNYNHQALPKALK 599

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             K    + +   +  YV+  + ++ P    +F+E K  + +  +  K +  +K    + 
Sbjct: 600 FKKG--VSKIYKHNQAYVVVLIKDLLPESQQTFEEAKGKVMSDYQEIKEANWLKVLASKY 657

Query: 392 E 392
           +
Sbjct: 658 K 658



 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 66/164 (40%), Gaps = 17/164 (10%)

Query: 364 FQEVKKDIANQMRIT-KASEKVKEDYKR-------LEEFLALGTSMDEISRREKIVSIDL 415
           F  ++ +I N  +    A +     +K+       +   +A     ++I +  K++  + 
Sbjct: 504 FDLMETEIWNAAKNDTLAVKTFYSKHKQNYFYKKRINAIVASSAKKEDIKKVAKLLKQNQ 563

Query: 416 PLVDFAGKDVKGKEVA------AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
           P+     +     E+        + Y  Q L +       +SK   +   + +Y+ V IK
Sbjct: 564 PIEAIKKEVNTNNEIKVSFTSGELNYNHQALPKALKFKKGVSK---IYKHNQAYVVVLIK 620

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           + +P   +  EE    V  D++ +K A  +   A++  +E +K+
Sbjct: 621 DLLPESQQTFEEAKGKVMSDYQEIKEANWLKVLASKYKVEINKD 664


>gi|17546463|ref|NP_519865.1| isomerase rotamase signal peptide protein [Ralstonia solanacearum
           GMI1000]
 gi|17428761|emb|CAD15446.1| putative isomerase rotamase signal peptide protein [Ralstonia
           solanacearum GMI1000]
          Length = 255

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 67/160 (41%), Gaps = 5/160 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K    ++D+L+ +YEK K ++ + +      ++   + +A      LK G  F ++
Sbjct: 92  EDYVKNSPTTDDDLRKQYEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEEI 151

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           A+ Q K     + G       P   + +  +  +  KKG+ T   +   FG+ +  + + 
Sbjct: 152 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEVTQTPVKTQFGWHVIRLDDT 211

Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394
           + +   +F++VK  +   M   +     K +   K L E 
Sbjct: 212 RDAKIPAFEDVKPQLLEMMMGDQNWQRAKFQAMLKDLREK 251


>gi|114331519|ref|YP_747741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
 gi|114308533|gb|ABI59776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
          Length = 264

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 93/231 (40%), Gaps = 8/231 (3%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR---HVPAIADPSNAVLTQWFEKYKDNYR 225
           V G+      LD   +        D   + N    ++      +   + +  ++  D   
Sbjct: 33  VNGIAIPQSRLDLVIKAATAQGQPDSAEMRNALRENLITEEVLTQEAIKKGLDRNPDVVT 92

Query: 226 APEYKRISYILFD-VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             +  R   ++     +  +   +S+DEL+ EYE  K +    E +    ++   ++EA 
Sbjct: 93  QIDLARQGILIRAYQADFMRNNPVSDDELRKEYESVKSQMGDKEYK-ARHILVETEQEAK 151

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPV 341
           +   SLKKG  F +LA E+       S G    +S   +     +D++  L K    +  
Sbjct: 152 DLVASLKKGGVFEKLAGERSIDTGSKSNGGELGWSSAAVYVKPFSDALTKLKKGETTSQP 211

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +   FG+ +  + +++ +   SF EVK+++  ++   K +  V+   K  +
Sbjct: 212 VQTPFGWHVIRLDDVRTAVPPSFDEVKQNMQQRVLQRKFAAVVESLRKNAK 262



 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 46/143 (32%), Gaps = 3/143 (2%)

Query: 477 RKLEEVLTDV-KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
           ++ E V + +  K++K      E   +A  LV    K G  F  +         + +   
Sbjct: 123 KEYESVKSQMGDKEYKARHILVETEQEAKDLVASLKKGG-VFEKLAGERSIDTGSKSNGG 181

Query: 536 RMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
            +  +    +       +           P++    + V ++ + +       D+    +
Sbjct: 182 ELGWSSAAVYVKPFSDALTKLKKGETTSQPVQTPFGWHVIRLDDVRTAVPPSFDEVKQNM 241

Query: 595 TQMMNKDLLDSVIAYLKSQYSVT 617
            Q + +    +V+  L+    V 
Sbjct: 242 QQRVLQRKFAAVVESLRKNAKVE 264



 Score = 38.4 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 12/98 (12%)

Query: 21  LFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           L VP  + G +     S  G  TV  V    +P S      K                 +
Sbjct: 7   LCVPLAVLGFVCTTPLSAQGGGTVAKVNGIAIPQSRLDLVIKAATAQ-----------GQ 55

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
             S  +   + +NL++   L Q     GL+ +   V  
Sbjct: 56  PDSAEMRNALRENLITEEVLTQEAIKKGLDRNPDVVTQ 93


>gi|226942107|ref|YP_002797181.1| SurA [Laribacter hongkongensis HLHK9]
 gi|226717034|gb|ACO76172.1| SurA [Laribacter hongkongensis HLHK9]
          Length = 434

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/416 (12%), Positives = 132/416 (31%), Gaps = 68/416 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V +Q +   +     ++    ++++           +  L +++L+ +++    
Sbjct: 34  DRIVAVVNKQAITQQALDTRVREAEAQLTRQ-----KVPLPPAGVLQQQMLERMINEEVQ 88

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q+  + G+  D   +   + R      + N+ + + F +RL  +GINE  +    ++ +
Sbjct: 89  LQYAGNNGIALDSAELDRIMDRL----AEQNRLTPEQFRARLKADGINEAAFRADLSRQV 144

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKR-FYFENRSVDYIVLNNRHVPAIADPSN------- 210
               +    V   +  S+  +D   R     NR+   +      +P  A P         
Sbjct: 145 ILDRLREREVDSKVNVSDSEVDAVLRSAVSANRTEFRLSHILITLPEQASPQEVAKRQQR 204

Query: 211 --------------AVLTQWFEKYKDNY-----------RAPEYKRISYILFDVHEK--- 242
                         A +   +   +D             R P     +       +    
Sbjct: 205 ASDAAAKLAAGAPFAQVAASYSDAQDALSGGDLGWRSATRLPPVFVAALEQLKPGQSTQV 264

Query: 243 ---EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-----FPNQKEAD----EAFQSL 290
                 + I   E +    +++      E R V  ++       + K+A     +    +
Sbjct: 265 LRSANGLHILKLEAR----RSRGDAQMVEQRQVRHILVRANEITSDKDAQTRILQIRDRI 320

Query: 291 KKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             G  F + A+   E G +     LG  +   +       +  +L   G  +  +   FG
Sbjct: 321 ANGMPFAEAAKLYSEDGSAPKGGDLGWVNPGDMV-PEFERAYLALP-VGQLSQPVRSPFG 378

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
           + +  V   +          + +I  ++R  K+ +   E  ++L     +   + +
Sbjct: 379 WHLILVDGTRQQDIGD-ARQRAEIRQELRARKSEQVYAEWLQQLRASAYVSERLQD 433


>gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isomerase [Herbaspirillum seropedicae
           SmR1]
 gi|300074343|gb|ADJ63742.1| peptidyl-prolyl cis-trans isomerase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 7/146 (4%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK  +S+ +++AEY+K K +    E      ++   +++A+     LK G KF  L
Sbjct: 103 ADYLKKNPVSDADIKAEYDKFKAQAGDKEY-HARHILVDKKEDAEAIIAKLKAGTKFEDL 161

Query: 300 AE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355
           A+   + G + +   L   +         +D++ +L KKG+ TP  +   FG+ +  + +
Sbjct: 162 AKQSKDTGSAANGGDLDWATPASFVKP-FSDAMVAL-KKGEVTPTPVQTQFGWHVIKLED 219

Query: 356 IKPSFTVSFQEVKKDIANQMRITKAS 381
           ++P+   +  EVK  IA  ++  K  
Sbjct: 220 VRPAKVPTLDEVKPQIAEALQQKKLQ 245



 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 40/118 (33%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
             +  + ++   K G  F D+ K    +    N  +        F       + +     
Sbjct: 141 KKEDAEAIIAKLKAGTKFEDLAKQSKDTGSAANGGDLDWATPASFVKPFSDAMVALKKGE 200

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           V   P++    + V K+ + +   V   D+    + + + +  L +    L+++  V 
Sbjct: 201 VTPTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEALQQKKLQAYQEQLRAKAKVQ 258



 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 11/123 (8%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           KED + +   L  GT  ++++++ K           A             + +     + 
Sbjct: 142 KEDAEAIIAKLKAGTKFEDLAKQSKDTG-------SAANGGDLDWATPASFVKPFSDAMV 194

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT---AEEVSS 501
                      V    G +  +++++  PA+   L+EV   + +  +  K     E++ +
Sbjct: 195 ALKKGEVTPTPVQTQFG-WHVIKLEDVRPAKVPTLDEVKPQIAEALQQKKLQAYQEQLRA 253

Query: 502 KAN 504
           KA 
Sbjct: 254 KAK 256


>gi|254718001|ref|ZP_05179812.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13]
 gi|265982948|ref|ZP_06095683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13]
 gi|306839780|ref|ZP_07472581.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. NF 2653]
 gi|264661540|gb|EEZ31801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13]
 gi|306405135|gb|EFM61413.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. NF 2653]
          Length = 331

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R   E R +  +      +  I   +        ++ K+     E+ R   +  +  
Sbjct: 87  QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +     +IS+ +++A Y+K               ++   ++EA+   + L+ G KF  LA
Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202

Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +     G + S   LG F++  +       + F+L         +   FGY +  + + +
Sbjct: 203 KASSTDGTASSGGDLGYFTEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408
                ++ +VK  I + +   +  E VK+             +E+ +    +  E S ++
Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321

Query: 409 KIVSIDLPL 417
                D P 
Sbjct: 322 DASEDDAPQ 330



 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +     D+++  +   V+   + +    +  ++A   +++  + G  F D+ K       
Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
            ++  +           +     F+         P++    Y V ++ + +       D+
Sbjct: 211 ASSGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               +  ++ ++     +  L+    +   D  I++ +
Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308


>gi|229084254|ref|ZP_04216537.1| Foldase protein prsA 2 [Bacillus cereus Rock3-44]
 gi|228699054|gb|EEL51756.1| Foldase protein prsA 2 [Bacillus cereus Rock3-44]
          Length = 283

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 89/234 (38%), Gaps = 32/234 (13%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-- 224
           V   + S +  D   +   E    D  Y ++    +      S+  + + F+K K+ +  
Sbjct: 30  VATSKVSTIKKDDFDKQLKERYGQDMLYEMMAQDIMTEKYKVSDDEVDKEFKKAKEQFGD 89

Query: 225 -----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
                      +  +  +         +K  K  ++  +++A Y+        PEI+   
Sbjct: 90  QFKTVLESNRLKDEDDFKDQIRFKLAMDKAIKQSVTEKDVKANYK--------PEIK-AS 140

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSI 329
            ++  ++K A++  + L +G  F +LA++  +          LG F    +      ++ 
Sbjct: 141 HILVNDEKTANDIKKQLDEGASFEELAKQHSQDPGSKEKGGDLGYFGPGKMA-SEFEEAA 199

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           + L   G+ +  I  S GY I  +++ K      + EVK  I   +   + +++
Sbjct: 200 YKL-NVGEISKPIKSSHGYHIIKLTDKKE--LKPYDEVKDSIRKDLEEKRLADQ 250


>gi|251772782|gb|EES53344.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum
           ferrodiazotrophum]
          Length = 307

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 6/151 (3%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
             +     EIS     AEY + K  Y +PE   V  +V  ++ E      +L  G  F  
Sbjct: 132 AEQVAPAPEISRKAALAEYNRRKGHYETPERALVRDIVVRSEDEGKAILTALAAGNSFSA 191

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA---KKGDFTPVIHGSFGYVIAHVSN 355
           LA  +  S      G      + ++    ++F+LA   K G+ +P++   +GY I  +  
Sbjct: 192 LARAKSLSPEGAKGGLLPPYALGEMP---ALFALAFSMKPGEVSPLLSSPYGYHILKLVK 248

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           I PS  + F++V+  I   +R     E + +
Sbjct: 249 ILPSADLPFRKVRDRIERHLREKAQREALAQ 279



 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 46/118 (38%), Gaps = 12/118 (10%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE-QLLFRV 443
           +++ K +   LA G S   ++R + +          + +  KG  +      E   LF +
Sbjct: 173 EDEGKAILTALAAGNSFSALARAKSL----------SPEGAKGGLLPPYALGEMPALFAL 222

Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
                P      ++ P G Y  +++ + +P+ D    +V   +++  +     E ++ 
Sbjct: 223 AFSMKPGEVSPLLSSPYG-YHILKLVKILPSADLPFRKVRDRIERHLREKAQREALAQ 279


>gi|83950728|ref|ZP_00959461.1| PPIC-type PPIASE domain protein [Roseovarius nubinhibens ISM]
 gi|83838627|gb|EAP77923.1| PPIC-type PPIASE domain protein [Roseovarius nubinhibens ISM]
          Length = 286

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 66/162 (40%), Gaps = 5/162 (3%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
             + ++++ LQ  YE       +        ++   ++EA    + L  G  F  LA+E+
Sbjct: 115 ANVALTDEALQKVYEDTYMTAEAQTEFNAAHILVETEEEAKALIEELNGGADFSALAKEK 174

Query: 304 GKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
               S      L  F+ + + +   A+++  + +KG  +  +   FG+ +  +++ +   
Sbjct: 175 STGPSGPNGGELDWFAGDMMVEP-FAEAVAKM-EKGAISEPVQTQFGWHVIKLNDTRTKE 232

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
               +EV+ ++   +R       + +  +  +     G ++D
Sbjct: 233 RPELEEVRAELEEVVRQQAIDAYMTDLSEGAKVDREAGDALD 274


>gi|306843392|ref|ZP_07475993.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO1]
 gi|306276083|gb|EFM57783.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO1]
          Length = 331

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R   E R +  +      +  I   +        ++ K+     E+ R   +  +  
Sbjct: 87  QFSRLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +     +IS+ +++A Y+K               ++   ++EA+   + L+ G KF  LA
Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202

Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +     G + S   LG F++  +       + F+L         +   FGY +  + + +
Sbjct: 203 KASSTDGTASSGGDLGYFTEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408
                ++ +VK  I + +   +  E VK+             +E+ +    +  E S ++
Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321

Query: 409 KIVSIDLPL 417
                D P 
Sbjct: 322 DASEDDAPQ 330



 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +     D+++  +   V+   + +    +  ++A   +++  + G  F D+ K       
Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
            ++  +           +     F+         P++    Y V ++ + +       D+
Sbjct: 211 ASSGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               +  ++ ++     +  L+    +   D  I++ +
Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308


>gi|126699161|ref|YP_001088058.1| putative peptidyl-prolyl isomerase [Clostridium difficile 630]
 gi|255306527|ref|ZP_05350698.1| putative peptidyl-prolyl isomerase [Clostridium difficile ATCC
           43255]
 gi|115250598|emb|CAJ68422.1| putative peptidylprolyl isomerase [Clostridium difficile]
          Length = 318

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/370 (13%), Positives = 118/370 (31%), Gaps = 78/370 (21%)

Query: 33  ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVG---LDK 87
           +L  V  + ++  V   ++    +  +        +   G  ++         G   L+ 
Sbjct: 14  SLMMVGCNKSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKGRNKLEN 73

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGI 146
            I+  +V    L Q  +D GL      V         +   ++K + +  +  ++ + G+
Sbjct: 74  VIISFMVDNELLYQEAKDKGLTPSKSEV------DSKYQELEDKMNLNTSYKEKMDKAGV 127

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
           ++       ++ L+                                     N +      
Sbjct: 128 DKDYLKQEISRDLAIDK----------------------------------NKKAFEDRI 153

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           + S+  +  ++  +K ++   E      ++  + + +K++     E   +   N      
Sbjct: 154 NISDNDMEAYYTSHKKDFNVEEVSASQILISTLDKNKKEVSKDKKEALKKKADN------ 207

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPD 322
                                  +K G+ F  LA++         +   LG F+K+   +
Sbjct: 208 -------------------ILTKIKNGESFESLAKKYSDDKATGKNGGQLGYFTKDD-KN 247

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +F L KK + + V   S+GY I  V++ +     SF E +  I   +   K  E
Sbjct: 248 AEFTKEVFKL-KKNEVSNVFETSYGYHIVKVTDKRE-RQKSFNECQSLIRESILNEKYIE 305

Query: 383 KVKEDYKRLE 392
            +K+  +  +
Sbjct: 306 HIKKLNEDAK 315


>gi|255100589|ref|ZP_05329566.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-63q42]
          Length = 318

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/370 (13%), Positives = 118/370 (31%), Gaps = 78/370 (21%)

Query: 33  ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVG---LDK 87
           +L  V  + ++  V   ++    +  +        +   G  ++         G   L+ 
Sbjct: 14  SLMMVGCNKSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKGRNKLEN 73

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGI 146
            I+  +V    L Q  +D GL      V         +   ++K + +  +  ++ + G+
Sbjct: 74  VIISFMVDNELLYQEAKDKGLTPSKSEV------DSKYQELEDKMNLNTSYKEKMDKAGV 127

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
           ++       ++ L+                                     N +      
Sbjct: 128 DKDYLKQEISRDLAIDK----------------------------------NKKAFEDRI 153

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           + S+  +  ++  +K ++   E      ++  + + +K++     E   +   N      
Sbjct: 154 NISDNDMEAYYTSHKKDFNVEEVSASQILISTLDKNKKEVSKDKKEALKKKADN------ 207

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPD 322
                                  +K G+ F  LA++         +   LG F+K+   +
Sbjct: 208 -------------------ILTKIKNGESFESLAKKYSDDKATGKNGGQLGYFTKDD-KN 247

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +F L KK + + V   S+GY I  V++ +     SF E +  I   +   K  E
Sbjct: 248 AEFTKEVFKL-KKNEVSNVFETSYGYHIVKVTDKRE-RQKSFNECQSLIRESILNEKYIE 305

Query: 383 KVKEDYKRLE 392
            +K+  +  +
Sbjct: 306 HIKKLNEDAK 315


>gi|149917238|ref|ZP_01905737.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Plesiocystis
           pacifica SIR-1]
 gi|149821845|gb|EDM81239.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Plesiocystis
           pacifica SIR-1]
          Length = 441

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 115/369 (31%), Gaps = 66/369 (17%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
             V  V    +    F + +  +L   + +   +  +   R     K I+D L+    L 
Sbjct: 44  DPVAKVNDVVITGELFHSIYDLKLQKYADRNRDIPKTADRRY---RKSIVDRLIYQEILR 100

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q  +   +  D   +            K      +     L R G +E+     Y   L 
Sbjct: 101 QEAKKRSIAYDKAELQQ--REDAQ---KRGIKDWEK---HLRRRGESEESLRQLYVAELL 152

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
              V+                                           ++  +   +EK 
Sbjct: 153 ERAVLEA-----------------------------------DGKLAVTDEEIAGEYEKV 177

Query: 221 KDNYRA-PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           K NY    E  R  +IL  V  ++K                 E    P     ++     
Sbjct: 178 KPNYTKDKERVRARHILIRVGPEQKPAP-------------GEPVPEPTEAQKKEWEEAA 224

Query: 280 QKEADEAFQSL-KKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            K+A+E +     +G  F QLA E      +     LG F+ + + +   +D+ F+L + 
Sbjct: 225 LKKAEEIYAKASAEGADFAQLAIELSEGPSARKGGDLGIFAADRMVE-EFSDAAFTL-EP 282

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G+ +  +   FG+ I  V        +  + ++  +  ++   K  +  ++  + L E  
Sbjct: 283 GEVSKPVKTKFGFHIIKVEGKYAPGELPIEALEDQLRERLSARKLHQGRRDLKESLLESY 342

Query: 396 ALGTSMDEI 404
           A+   M++ 
Sbjct: 343 AVENHMEKA 351


>gi|254708930|ref|ZP_05170741.1| parvulin-like PPIase precursor [Brucella pinnipedialis B2/94]
 gi|256030456|ref|ZP_05444070.1| parvulin-like PPIase precursor [Brucella pinnipedialis M292/94/1]
 gi|261316430|ref|ZP_05955627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis B2/94]
 gi|265987500|ref|ZP_06100057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M292/94/1]
 gi|261295653|gb|EEX99149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis B2/94]
 gi|264659697|gb|EEZ29958.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M292/94/1]
          Length = 328

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 94/249 (37%), Gaps = 20/249 (8%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R   E R +   +++ + +   A+      T+ F+         E+ R   +  +  
Sbjct: 87  QFARLPVEQRRLA-ALIDIKAMAGEAEKDKLDQTKEFKDRM------EFLRERALHNEYF 139

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +     +IS+ +++A Y+K               ++   ++EA+   + L+ G KF  LA
Sbjct: 140 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 199

Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +     G + S   LG FS+  +       + F+L         +   FGY +  + + +
Sbjct: 200 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 258

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408
                ++ +VK  I + +   +  E VK+             +E+ +    +  E S ++
Sbjct: 259 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 318

Query: 409 KIVSIDLPL 417
                D P 
Sbjct: 319 DASEDDAPQ 327



 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +     D+++  +   V+   + +    +  ++A   +++  + G  F D+ K       
Sbjct: 151 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 207

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
            ++  +           +     F+         P++    Y V ++ + +       D+
Sbjct: 208 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 267

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               +  ++ ++     +  L+    +   D  I++ +
Sbjct: 268 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 305


>gi|299066760|emb|CBJ37954.1| Putative Peptidylprolyl isomerase; exported protein [Ralstonia
           solanacearum CMR15]
          Length = 265

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 67/160 (41%), Gaps = 5/160 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K    ++D+L+ +YEK K ++ + +      ++   + +A      LK G  F ++
Sbjct: 102 EDYVKNSPTTDDDLRKQYEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEEI 161

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           A+ Q K     + G       P   + +  +  +  KKG+ T   +   FG+ +  + + 
Sbjct: 162 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEVTQTPVKTQFGWHVIRLDDT 221

Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394
           + +   +F++VK  +   M   +     K +   K L E 
Sbjct: 222 RDAKIPAFEDVKPQLLEMMMGDQNWQRAKFQTMLKDLREK 261


>gi|229165978|ref|ZP_04293743.1| Foldase protein prsA 1 [Bacillus cereus AH621]
 gi|228617531|gb|EEK74591.1| Foldase protein prsA 1 [Bacillus cereus AH621]
          Length = 286

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 34/242 (14%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I ++E+ +       +  +  M +             ++   +N  VD   ++ +     
Sbjct: 35  ITKEEFYNQMKTQAGKQVLNNMVM-------------EKVLIKNYKVDEKEVDKKFDEMK 81

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
               +     +    K      E  +         E+  +  I++ EL+  Y+       
Sbjct: 82  KQVGDQ----FDTLMKQQGLKEETVKNGVRASLAQEQAIEKTITDKELKENYK------- 130

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIP 321
            PEI+    ++  ++  A +  + L +GK F  LA++  +          LG F+   + 
Sbjct: 131 -PEIK-ASHILVKDEATAKKVKEELGQGKSFEDLAKQYSEDTGSKEKGGDLGYFTAGKMV 188

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                D+ + + KK + +  +   FGY I  V++IK      F EVK DI   +   K  
Sbjct: 189 K-EFEDAAYKM-KKDEVSEPVKSQFGYHIIKVTDIKE--QKPFDEVKGDIKKDLVQKKTQ 244

Query: 382 EK 383
           + 
Sbjct: 245 DA 246



 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 46/222 (20%)

Query: 279 NQKEADEAFQSLKK--GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           ++KE D+ F  +KK  G +F  L ++QG     +  G  +              SLA++ 
Sbjct: 69  DEKEVDKKFDEMKKQVGDQFDTLMKQQGLKEETVKNGVRA--------------SLAQEQ 114

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
                                   T++ +E+K++   +++ +    K +   K+++E L 
Sbjct: 115 AI--------------------EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELG 154

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
            G S ++++++    +         G    GK V         + +    +   S+    
Sbjct: 155 QGKSFEDLAKQYSEDTGSKEKGGDLGYFTAGKMVKEFEDAAYKMKKDEVSEPVKSQF--- 211

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
                 Y  +++ +      +  +EV  D+KKD    KT + 
Sbjct: 212 -----GYHIIKVTDIKE--QKPFDEVKGDIKKDLVQKKTQDA 246


>gi|220919568|ref|YP_002494872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219957422|gb|ACL67806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 317

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/380 (13%), Positives = 110/380 (28%), Gaps = 96/380 (25%)

Query: 20  VLFVPFLIWGLSDALFSVSGSS----TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +L    L  G      + SG       V  V  + +   +     +        +     
Sbjct: 8   ILIATALAAGCGRCGGARSGERPAPGAVAVVNGEPIAPDAVARELRDAQAGAEGQ----- 62

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
              +A    L +++LD+LV  A L Q      +     +V     R          F   
Sbjct: 63  --GQATGDVLRRRVLDDLVDRALLLQQARARSIVVGQDQVERAFLRLRA-EYPGTHFDD- 118

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
                LA+E +++ E        L+   +                               
Sbjct: 119 ----LLAQERLSQAELKARLKDQLTVERLFEQ---------------------------- 146

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
                 V       +A + +++ ++   ++ PE                           
Sbjct: 147 -----EVFPQVQVVDAEVERYYAEHGAEFQEPERV------------------------- 176

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSL---SDIS 311
                           V Q+V  +++EA +  + L +  + F ++A     +    S   
Sbjct: 177 ---------------HVLQIVVASREEAAQVREKLRRNPQTFAEVARRSSIAPEGKSGGD 221

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           LG   +       + D+ FSL      + V    +G+ +  V   KP+   + ++ + +I
Sbjct: 222 LGLIGRGAGF-PEVFDTCFSLP-VNVISDVTPSPYGFHLFKVVEKKPAQRRTLEQARAEI 279

Query: 372 ANQMRITKASEKVKEDYKRL 391
           A ++   K +    E  + L
Sbjct: 280 AEKLGREKRAGAQAEYLEAL 299


>gi|306842909|ref|ZP_07475545.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO2]
 gi|306286932|gb|EFM58452.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO2]
          Length = 331

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R   E R +  +      +  I   +        ++ K+     E+ R   +  +  
Sbjct: 87  QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +     +IS+ +++A Y+K               ++   ++EA+   + L+ G KF  LA
Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202

Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +     G + S   LG F++  +       + F+L         +   FGY +  + + +
Sbjct: 203 KASSTDGTASSGGDLGYFTEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408
                ++ +VK  I + +   +  E VK+             +E+ +    +  E S ++
Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321

Query: 409 KIVSIDLPL 417
                D P 
Sbjct: 322 DASEDDAPQ 330



 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +     D+++  +   V+   + +    +  ++A   +++  + G  F D+ K       
Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
            ++  +           +     F+         P++    Y V ++ + +       D+
Sbjct: 211 ASSGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               +  ++ ++     +  L+    +   D  I++ +
Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308


>gi|298528166|ref|ZP_07015570.1| SurA domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511818|gb|EFI35720.1| SurA domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 326

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/357 (11%), Positives = 112/357 (31%), Gaps = 83/357 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +  V  V  + +         +  LG+        +     +     + +L+ +++   +
Sbjct: 42  NRIVAHVNGESITLFDLEKRVEMFLGLFEDISLDELPP--VQQEETRRHVLEQMINDILM 99

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E   +E  +  +   I R       +N  + + F   L  +G++ ++Y D     +
Sbjct: 100 RQEAERYQIEVRNREIQEHIERVKQ----NNNMNQEEFEQHLRAQGLSLEDYKDQIRDSM 155

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  V+ + V                  + ++V                ++  + +++E 
Sbjct: 156 LRQRVMNIMV------------------QRKTV---------------VTSDRIKEYYED 182

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
              +++      +                                          LV P 
Sbjct: 183 NIQDFKKERKVHLKV----------------------------------------LVVPR 202

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGS--FSKEYIPDVSLADSIFSLAKKG 336
            +EA+     +K+G+ +F + AE   +       G     +         +++ ++ + G
Sbjct: 203 VEEAETLLDKIKEGEYQFAEAAENYSQGPGASEGGDIGMVRWDRMRPEWREALKNM-EAG 261

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           + +         V+  V  I     V  +EV+++I +++      ++  E  + L +
Sbjct: 262 EISEPFAMQGQGVLLRVEEIHDEGAVPLEEVEEEIRDELFDKMLEKRFDEYIQGLRD 318


>gi|193211689|ref|YP_001997642.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum
           NCIB 8327]
 gi|193085166|gb|ACF10442.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum
           NCIB 8327]
          Length = 439

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 81/514 (15%), Positives = 157/514 (30%), Gaps = 102/514 (19%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
              F  VL V   + GLSDA+ S +    V  VGR+ +  S                   
Sbjct: 5   VFAFFAVLIV--ALAGLSDAIASSAPDKIVAIVGREIILKSQINEQELMYHLQYR----- 57

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
               E     GL +KIL N++    L        +  +   +                  
Sbjct: 58  ----ESKNDPGLRQKILKNMIDQKILLTKARIDSISVNEQGIDEMA-------------- 99

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           +  + + L  +              L    +       +R +  ++D  +R +F + +V 
Sbjct: 100 NAKYNA-LRSQ--FPSVSAMEERFSLPVNRLKQDIRDDIR-NQQMVDALRRKHFHDVTVS 155

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-RAPEYKRISYILFDVHEKEKKIEISNDE 252
           Y                  +  ++ K ++N  + PE   +S ++          EI++ E
Sbjct: 156 Y----------------DEVMAFYGKERNNLPKVPEMVSVSQLIRYP-------EIADSE 192

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---- 308
                          + R + ++            Q L+ G  F  LA E          
Sbjct: 193 ---------------KQRAMSKI--------QAISQQLQNGADFATLARETSDDPGSREL 229

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT------V 362
              LG   K  +   S  ++ ++L K G  + V+   FGY +  + + +           
Sbjct: 230 GGDLGFVHKGELV-PSFEEAAYAL-KPGQISGVVESRFGYHLIQLIDKEDQSIHVRHILA 287

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
           +F   K D+   +R+ +A            + LA   S  E++ +               
Sbjct: 288 AFDRNKTDLPKTVRMLEAIRA---------DILAGKASFAEMAEKYSEDPASKGTGGQVI 338

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGK---DDPLSKDHTVALPDGSYM--WVQIKESIPARDR 477
               G+           L ++ G       +S+   +    G +     ++ E +PA   
Sbjct: 339 SSATGEPFLVFDSLRPDLQKIVGGLKHAGDISQPVKIEPERGPFFYALFRLDERLPAHQL 398

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
             E   T +++     K  E+  +   +L  E  
Sbjct: 399 SPERDFTRLEEMAANQKRQEQFEAWIEKLKKEVV 432



 Score = 37.3 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 82/276 (29%), Gaps = 27/276 (9%)

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
                   V + I          ++     + + + L  G     ++R          L 
Sbjct: 171 PKVPEMVSVSQLIRYPEIADSEKQRAMSKIQAISQQLQNGADFATLARETSDDPGSRELG 230

Query: 419 DFAGKDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKDHTVALPDGSYMWVQIKESI---- 472
              G   KG+ V +       L   ++ G  +     H + L D     + ++  +    
Sbjct: 231 GDLGFVHKGELVPSFEEAAYALKPGQISGVVESRFGYHLIQLIDKEDQSIHVRHILAAFD 290

Query: 473 ------PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
                 P   R LE +  D+             +  A +   + + +G   + I    G 
Sbjct: 291 RNKTDLPKTVRMLEAIRADILA------GKASFAEMAEKYSEDPASKGTGGQVISSATGE 344

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---- 582
             L  + + R D +    G      + S P   VK  P      Y +F++          
Sbjct: 345 PFLVFDSL-RPDLQKIVGGLKHAGDI-SQP---VKIEPERGPFFYALFRLDERLPAHQLS 399

Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           P ++  +          ++  ++ I  LK +  V V
Sbjct: 400 PERDFTRLEEMAANQKRQEQFEAWIEKLKKEVVVRV 435


>gi|228990245|ref|ZP_04150213.1| Foldase protein prsA 2 [Bacillus pseudomycoides DSM 12442]
 gi|228996340|ref|ZP_04155983.1| Foldase protein prsA 2 [Bacillus mycoides Rock3-17]
 gi|229004004|ref|ZP_04161808.1| Foldase protein prsA 2 [Bacillus mycoides Rock1-4]
 gi|228757218|gb|EEM06459.1| Foldase protein prsA 2 [Bacillus mycoides Rock1-4]
 gi|228763379|gb|EEM12283.1| Foldase protein prsA 2 [Bacillus mycoides Rock3-17]
 gi|228769484|gb|EEM18079.1| Foldase protein prsA 2 [Bacillus pseudomycoides DSM 12442]
          Length = 284

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 83/199 (41%), Gaps = 14/199 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248
           Y ++    +      S+  + + F+K KD +        E  R+       ++   K+ +
Sbjct: 57  YEMMAQDIMTKKYKVSDDEVDKEFKKAKDQFGDQFKTVLESNRLKDEDDFKNQIRFKLAM 116

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           +    ++  +K+ +  + PEI+    ++  ++K A++  + L +G  F +LA++Q +   
Sbjct: 117 NEAIKKSITDKDVKANYKPEIK-ASHILVNDEKTANDIKKQLDEGASFEELAKQQSQDPG 175

Query: 309 ----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F    +      ++ + L   G+ +  I  S GY I  +++ K      +
Sbjct: 176 SKENGGDLGYFGPGKMV-PEFEEAAYKL-NVGEISKPIKSSQGYHIIKLTDKKE--LKPY 231

Query: 365 QEVKKDIANQMRITKASEK 383
            EVK  I   +     +++
Sbjct: 232 DEVKDSIRKNLEEKLLADQ 250


>gi|116872876|ref|YP_849657.1| peptidyl-prolyl isomerase (post-translocation molecular chaperone)
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741754|emb|CAK20878.1| peptidyl-prolyl isomerase (post-translocation molecular chaperone)
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 294

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 90/240 (37%), Gaps = 27/240 (11%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224
                 +   L +A +  + N  V  +    + +      +   L   ++KY++ Y    
Sbjct: 30  TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKELNAEYKKYEEQYGDSF 88

Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                     +    + + Y L      E  +++S+ +L+  Y+  +          V  
Sbjct: 89  ESTLSSNNLTKTSFKENLEYNLLVQKATEANMKVSDSKLKTYYKTWEPDIT------VRH 142

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331
           ++  ++  A E    LK G+KF  LA+E     +  + G     + P   D +   + ++
Sbjct: 143 ILVDDEATAKEIQTKLKNGEKFSDLAKEYSTDTATKTNGGLLDPFGPGEMDETFEKAAYA 202

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKR 390
           L  K D + ++  ++GY +  +         S+++ K ++    ++    SE +    K+
Sbjct: 203 LENKDDISGIVKSTYGYHLIQLVKKTEKG--SYEKEKANVKKAYIKSQLTSENMTAALKK 260


>gi|328551773|gb|AEB22265.1| hypothetical protein BAMTA208_00365 [Bacillus amyloliquefaciens
           TA208]
 gi|328910033|gb|AEB61629.1| putative protein secretion PrsA [Bacillus amyloliquefaciens LL3]
          Length = 296

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 89/245 (36%), Gaps = 33/245 (13%)

Query: 148 EKEYIDHYTKMLSRTDVVGMFV--GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           E EY     + +  T VV        +  SN  L+         R    I   N      
Sbjct: 56  EDEYGKSTLEDMINTQVVEELAKKNKLTVSNSELE---------REFLLIKAVNNSFYED 106

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
           +  +                     +I Y +       K I+IS+ E+Q+ Y KNKE Y 
Sbjct: 107 SHITEKEWKD---------------QIRYNILLEELLTKDIDISDKEMQSFYNKNKELYQ 151

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFS--KEY 319
             +   +  +V  +++EAD     LK G  F  +A E+            LG  +  +E 
Sbjct: 152 FDDSYRIRHIVVKSKEEADRVLADLKGGSSFEAVAAERSTDRYTSQYGGDLGFVTENQEN 211

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           IP   + ++  +L +       I  S GY +  +     + T S+ EVK  I  Q+ + +
Sbjct: 212 IPPAYITEAK-NLKENEWSAEPIKVSSGYAVIQLKEKLKARTFSYNEVKSQIRRQIAMDQ 270

Query: 380 ASEKV 384
             +K 
Sbjct: 271 LGDKA 275


>gi|17986407|ref|NP_539041.1| peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str.
           16M]
 gi|62290796|ref|YP_222589.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 1 str.
           9-941]
 gi|82700707|ref|YP_415281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           biovar Abortus 2308]
 gi|189025011|ref|YP_001935779.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           S19]
 gi|254696195|ref|ZP_05158023.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           2 str. 86/8/59]
 gi|254731113|ref|ZP_05189691.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           4 str. 292]
 gi|260546060|ref|ZP_05821800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           NCTC 8038]
 gi|260758847|ref|ZP_05871195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           4 str. 292]
 gi|260760571|ref|ZP_05872914.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           2 str. 86/8/59]
 gi|17982000|gb|AAL51305.1| peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str.
           16M]
 gi|62196928|gb|AAX75228.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 1 str.
           9-941]
 gi|82616808|emb|CAJ11900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           biovar Abortus 2308]
 gi|189020583|gb|ACD73305.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           S19]
 gi|260096167|gb|EEW80043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           NCTC 8038]
 gi|260669165|gb|EEX56105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           4 str. 292]
 gi|260671003|gb|EEX57824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           2 str. 86/8/59]
          Length = 331

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R   E R +  +      +  I   +        ++ K+     E+ R   +  +  
Sbjct: 87  QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +     +IS+ +++A Y+K               ++   ++EA+   + L+ G KF  LA
Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202

Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +     G + S   LG FS+  +       + F+L         +   FGY +  + + +
Sbjct: 203 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408
                ++ +VK  I + +   +  E VK+             +E+ +    +  E S ++
Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321

Query: 409 KIVSIDLPL 417
                D P 
Sbjct: 322 DASEDDAPQ 330



 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +     D+++  +   V+   + +    +  ++A   +++  + G  F D+ K       
Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
            ++  +           +     F+         P++    Y V ++ + +       D+
Sbjct: 211 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               +  ++ ++     +  L+    +   D  I++ +
Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308


>gi|146278793|ref|YP_001168952.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557034|gb|ABP71647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 284

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 5/148 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++++ LQA Y+                ++   ++EA +    ++ G  F  +A E    
Sbjct: 118 AVTDEALQAAYDARFADAAEQTEYNASHILVETEEEATKLKAEIEGGADFADMAREHSSD 177

Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               +  SLG F    +      D++  + K G     I   FG+ +  ++  + +   +
Sbjct: 178 GAAANGGSLGWFGLGMMVKP-FEDAVVGM-KPGAVAGPIETQFGWHLVKLNETRIAEKPT 235

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391
             E++ ++A Q+     +  + E   + 
Sbjct: 236 LDEMRDELAGQIEQEAIARHIDEVTAKA 263


>gi|228957536|ref|ZP_04119288.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228802128|gb|EEM48993.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 285

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249
           Y ++    +       +  + +  EK K  Y    +    +Y L D  + + +I+     
Sbjct: 57  YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116

Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           N+ ++    EK+ + ++ PEI+    ++  ++ EA E    L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L   G  +  +  S GY +  +++ K      +
Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKA--LKPY 231

Query: 365 QEVKKDIANQMRITKASEKVKED 387
            EVK  I   +   + ++ V   
Sbjct: 232 DEVKDSIRKNLEEERTADPVFSK 254



 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKK--ALKPYDEVKDS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  +TA+ V SK  +L+ E  K+
Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263


>gi|148558977|ref|YP_001259765.1| peptidyl-prolyl cis-trans isomerase [Brucella ovis ATCC 25840]
 gi|148370234|gb|ABQ60213.1| peptidyl-prolyl cis-trans isomerase [Brucella ovis ATCC 25840]
          Length = 331

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R   E R +  +      +  I   +        ++ K+     E+ R   +  +  
Sbjct: 87  QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +     +IS+ +++A Y+K               ++   ++EA+   + L+ G KF  LA
Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202

Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +     G + S   LG FS+  +       + F+L         +   FGY +  + + +
Sbjct: 203 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408
                ++ +VK  I + +   +  E VK+             +E+ +    +  E S ++
Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321

Query: 409 KIVSIDLPL 417
                D P 
Sbjct: 322 DASEDDAPQ 330



 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +     D+++  +   V+   + +    +  ++A   +++  + G  F D+ K       
Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
            ++  +           +     F+         P++    Y V ++ + +       D+
Sbjct: 211 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               +  ++ ++     +  L+    +   D  I++ +
Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308


>gi|254975115|ref|ZP_05271587.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-66c26]
 gi|255092504|ref|ZP_05321982.1| putative peptidyl-prolyl isomerase [Clostridium difficile CIP
           107932]
 gi|255314242|ref|ZP_05355825.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-76w55]
 gi|255516921|ref|ZP_05384597.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-97b34]
 gi|255650024|ref|ZP_05396926.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-37x79]
          Length = 318

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/370 (13%), Positives = 119/370 (32%), Gaps = 78/370 (21%)

Query: 33  ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVG---LDK 87
           +L  V  + ++  V   ++    +  +        +   G  ++         G   L+ 
Sbjct: 14  SLMMVGCNKSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKGRNKLEN 73

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGI 146
            I+  +V    L Q  +D GL      V         +   ++K + +  +  ++ + G+
Sbjct: 74  VIISFMVDNELLYQEAKDKGLTPSKSEV------DSKYQELEDKMNLNTSYKEKMDKAGV 127

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
           +++      ++ L+                                     N +      
Sbjct: 128 DKEYLKQEISRDLAIDK----------------------------------NKKAFEDRI 153

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           + S+  +  ++  +K ++   E      ++  + + +K++     E   +   N      
Sbjct: 154 NISDNDMEAYYTSHKKDFNVEEVSASQILISTLDKNKKEVSKDKKEALKKKADN------ 207

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPD 322
                                  +K G+ F  LA++         +   LG F+K+   +
Sbjct: 208 -------------------ILTKIKNGESFESLAKKYSDDKATGKNGGQLGYFTKDD-KN 247

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +F L KK + + V   S+GY I  V++ +     SF E +  I   +   K  E
Sbjct: 248 AEFTKEVFKL-KKNEVSNVFETSYGYHIVKVTDKRE-RQKSFNECQSLIRESILNEKYIE 305

Query: 383 KVKEDYKRLE 392
            +K+  +  +
Sbjct: 306 HIKKLNEDAK 315


>gi|77164285|ref|YP_342810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|254434865|ref|ZP_05048373.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27]
 gi|76882599|gb|ABA57280.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|207091198|gb|EDZ68469.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27]
          Length = 304

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 14/155 (9%)

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK---------GKKFIQLAEEQ 303
            +  Y+ N EKY  PE   V  ++   ++ ++E  + L +          K F +LA E 
Sbjct: 131 ARERYQANPEKYQQPERVKVSHILIKTEERSEEEAKKLAEKVRQLALTEEKPFSELALEY 190

Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            +  S       LG   K         ++ F+L + G+ +PV+   FG+ I  +   +  
Sbjct: 191 SEDPSLEKNKGDLGFIVKGVTTKP-FEEAAFALEQPGEISPVVKSRFGFHIIRLEERQAP 249

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            T SF+EVK+ +  ++R T  ++ V+    ++   
Sbjct: 250 KTKSFEEVKERLVEKIRETHLNQVVQTHLNQIRNA 284


>gi|56476034|ref|YP_157623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
 gi|56312077|emb|CAI06722.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
          Length = 454

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 121/402 (30%), Gaps = 63/402 (15%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
              V  + +         +Q +  ++++ G            L++++L+ LV      Q 
Sbjct: 54  AAVVNNEVITARELRERVEQAIHQLNRQ-GTPQPPADV----LERQLLERLVLERAQLQL 108

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
             +  L+ D   +   IAR      + N+ +     + L ++G++   + D+    +  T
Sbjct: 109 ARETSLQVDEATLERAIARI----AESNRLTIAQLQAALEKDGVSWSRFRDNIRTEILLT 164

Query: 163 DVVG------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--------- 207
            +        + V      N L + A     E   + +I++                   
Sbjct: 165 RLREREVDNRIVVTDAEVDNFLANNADALSGEEFELAHILIRVPEAATQQQMAGLVARAE 224

Query: 208 ---------PSNAVLTQWFEKYKDNY-----------RAPEYKRISYILFDVHEKEKKIE 247
                       A +   +    D             R P     +            + 
Sbjct: 225 TAKQRLNSGDDFARVAASYSDAPDAMNGGALGWRSRDRLPPLFAEAVRELSPGSVSPVLR 284

Query: 248 ISN-DELQAEYEKNKEKYFSP---EIRTVEQLVFPN-----QKEADE----AFQSLKKGK 294
            S    +    ++       P   E      ++          EA+       + +  G 
Sbjct: 285 SSAGLHIVKLLDRRGGAAAGPQQLEQTRARHILIRTSEILNDSEAESRLLGLRERVVNGA 344

Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F +LA+     LS      LG  S           ++ +L K G+ +  +   FG+ + 
Sbjct: 345 SFAELAKAHSADLSSAKGGDLGWLSPGDTV-PEFERTMNAL-KPGEVSAPVRSPFGWHLI 402

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            V   +    VS +  +    N +R  KA E  ++  ++L +
Sbjct: 403 QVEARR-LQDVSDERKRNAARNALRERKADEAFEDWLRQLRD 443



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 93/292 (31%), Gaps = 42/292 (14%)

Query: 141 LAREGINEKEYIDHYTKMLS------RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           L R+G   +   D   + L       R  +       ++     L++A     E+  +  
Sbjct: 78  LNRQG-TPQPPADVLERQLLERLVLERAQLQLARETSLQVDEATLERAIARIAESNRLTI 136

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
             L           S              +R      I        E + +I +++ E+ 
Sbjct: 137 AQLQAALEKDGVSWS-------------RFRDNIRTEILLTRLREREVDNRIVVTDAEVD 183

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAEE 302
                N +     E   +  ++    + A            + A Q L  G  F ++A  
Sbjct: 184 NFLANNADALSGEEF-ELAHILIRVPEAATQQQMAGLVARAETAKQRLNSGDDFARVAAS 242

Query: 303 QGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-- 357
              +       +LG  S++ +P    A+++  L+  G  +PV+  S G  I  + + +  
Sbjct: 243 YSDAPDAMNGGALGWRSRDRLP-PLFAEAVRELS-PGSVSPVLRSSAGLHIVKLLDRRGG 300

Query: 358 -PSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
             +     ++ +   I  +        + +     L E +  G S  E+++ 
Sbjct: 301 AAAGPQQLEQTRARHILIRTSEILNDSEAESRLLGLRERVVNGASFAELAKA 352


>gi|23502793|ref|NP_698920.1| peptidyl-prolyl cis-trans isomerase [Brucella suis 1330]
 gi|163843966|ref|YP_001628370.1| parvulin-like PPIase precursor [Brucella suis ATCC 23445]
 gi|23348814|gb|AAN30835.1| peptidyl-prolyl cis-trans isomerase [Brucella suis 1330]
 gi|163674689|gb|ABY38800.1| Parvulin-like PPIase precursor [Brucella suis ATCC 23445]
          Length = 331

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R   E R +  +      +  I   +        ++ K+     E+ R   +  +  
Sbjct: 87  QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +     +IS+ +++A Y+K               ++   ++EA+   + L+ G KF  LA
Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202

Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +     G + S   LG FS+  +       + F+L         +   FGY +  + + +
Sbjct: 203 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408
                ++ +VK  I + +   +  E VK+             +E+ +    +  E S ++
Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321

Query: 409 KIVSIDLPL 417
                D P 
Sbjct: 322 DASEDDAPQ 330



 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +     D+++  +   V+   + +    +  ++A   +++  + G  F D+ K       
Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
            ++  +           +     F+         P++    Y V ++ + +       D+
Sbjct: 211 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               +  ++ ++     +  L+    +   D  I++ +
Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308


>gi|82703233|ref|YP_412799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
 gi|82411298|gb|ABB75407.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
          Length = 265

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 4/155 (2%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +  K   +S++EL  EYE  K +    E +    ++   ++EA +    LKKG KF +LA
Sbjct: 110 DYIKNHPVSDEELHKEYETVKTQMGDKEYK-AHHILVATEEEAKDIIAKLKKGAKFDKLA 168

Query: 301 EEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            E+       S G    +S         A+++  L K       +   FG+ +  + +++
Sbjct: 169 GEKSLDTGSKSKGGELDWSPAASYVQPFAEALTKLHKGQLTDQPVKTPFGWHVIRLDDVR 228

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           P     F+E+K+++A ++   + +  + +   + +
Sbjct: 229 PLKIPPFEEIKQNLAQRVLQRQFAASINDLRSKAK 263



 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 52/143 (36%), Gaps = 3/143 (2%)

Query: 477 RKLEEVLTDV-KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
           ++ E V T +  K++K          +A  ++ +  K+G  F  +         + ++  
Sbjct: 124 KEYETVKTQMGDKEYKAHHILVATEEEAKDIIAKL-KKGAKFDKLAGEKSLDTGSKSKGG 182

Query: 536 RMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
            +D +    +       +       +   P++    + V ++ + +   +   ++    L
Sbjct: 183 ELDWSPAASYVQPFAEALTKLHKGQLTDQPVKTPFGWHVIRLDDVRPLKIPPFEEIKQNL 242

Query: 595 TQMMNKDLLDSVIAYLKSQYSVT 617
            Q + +    + I  L+S+  V 
Sbjct: 243 AQRVLQRQFAASINDLRSKAKVE 265



 Score = 38.0 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 51/146 (34%), Gaps = 9/146 (6%)

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
             ++ VK  + +  +  KA   +    +  ++ +A    + + ++ +K+           
Sbjct: 124 KEYETVKTQMGD--KEYKAHHILVATEEEAKDIIAK---LKKGAKFDKLAGEKSLDTGSK 178

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
            K  +     A  Y +     +         D  V  P G +  +++ +  P +    EE
Sbjct: 179 SKGGELDWSPAASYVQPFAEALTKLHKGQLTDQPVKTPFG-WHVIRLDDVRPLKIPPFEE 237

Query: 482 VLTDVKKDWKTVKTAEE---VSSKAN 504
           +  ++ +     + A     + SKA 
Sbjct: 238 IKQNLAQRVLQRQFAASINDLRSKAK 263



 Score = 37.3 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 11/88 (12%)

Query: 30  LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
           ++         ST+  V    +P S            +   +    +  +  +    K +
Sbjct: 18  IAATTVQAQTGSTMAKVNGTPIPQS-----------RLEFIMKARASQGQPDTPEARKAL 66

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWG 117
            ++L++   + Q  +  GL+ D   +  
Sbjct: 67  REDLITEEVIAQEAKKKGLDRDPDFITQ 94


>gi|255655579|ref|ZP_05400988.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-23m63]
 gi|296451569|ref|ZP_06893304.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP08]
 gi|296878826|ref|ZP_06902826.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP07]
 gi|296259634|gb|EFH06494.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP08]
 gi|296430098|gb|EFH15945.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP07]
          Length = 318

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 119/370 (32%), Gaps = 78/370 (21%)

Query: 33  ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVG---LDK 87
           +L  V  + ++  V   ++    +  +        +   G  ++         G   L+ 
Sbjct: 14  SLMMVGCNKSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKGRNKLEN 73

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGI 146
            I+  +V    L Q  +D GL      V         +   ++K + +  +  ++ + G+
Sbjct: 74  VIISFMVDNELLYQEAKDKGLTPSKSEV------DSKYQELEDKMNLNTSYKEKMDKAGV 127

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
           +++      ++ L+                                     N +      
Sbjct: 128 DKEYLKQEISRDLAIDK----------------------------------NKKAFEDRI 153

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           + S+  +  ++  +K ++   E      ++  + + +K++     E   +   N      
Sbjct: 154 NISDNDMEAYYTSHKKDFNVEEISASQILISTLDKNKKEVSKDKKEALKKKADN------ 207

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPD 322
                                  +K G+ F  LA++         +   LG FSK+   +
Sbjct: 208 -------------------ILTKIKNGESFESLAKKYSDDKATGKNGGQLGYFSKDD-KN 247

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +F L KK + + V   S+GY I  V++ +     SF E +  I   +   K  E
Sbjct: 248 AEFTKEVFKL-KKNEVSKVFETSYGYHIVKVTDKRE-RQKSFNECQSLIRESILNEKYIE 305

Query: 383 KVKEDYKRLE 392
            +K+  +  +
Sbjct: 306 HIKKLNEDAK 315


>gi|162146617|ref|YP_001601076.1| peptidylprolyl isomerase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785192|emb|CAP54738.1| Peptidylprolyl isomerase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 308

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 56/147 (38%), Gaps = 6/147 (4%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            +++  +QA Y ++              ++   + EA +  + LK G  F  LA +    
Sbjct: 135 TLTDAAVQAYYTQHYANKKPEAEIHARHILVATEAEAKDVIKQLKAGADFGALATKLSTD 194

Query: 307 -----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                 +   LG F K  +   + +D+ F++         +H  +G+ +  V + + +  
Sbjct: 195 KASAKQNGGDLGWFKKGDML-PAFSDAAFAMKPHTFSQTPVHTQYGWHVIEVLDTRTADV 253

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDY 388
                V+ +I  ++      + V++  
Sbjct: 254 PKLDAVRDEIRQKLIQQGVRDAVEKAV 280



 Score = 37.7 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 11/87 (12%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V SV  + +  +    +       + Q    ++             +L+ L+    +   
Sbjct: 50  VASVNGEDIHLNDVRQAAANMPAQLRQLPPNMIFP----------MLLNQLIDQKAIQAA 99

Query: 103 IEDIGLE-ADHGRVWGEIARSPLFHGK 128
               GL+     +     A        
Sbjct: 100 ATHAGLDKQPDVQQQMHAAAMNALQNA 126


>gi|225853381|ref|YP_002733614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           ATCC 23457]
 gi|254694570|ref|ZP_05156398.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           3 str. Tulya]
 gi|254700583|ref|ZP_05162411.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5
           str. 513]
 gi|254707533|ref|ZP_05169361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M163/99/10]
 gi|254713643|ref|ZP_05175454.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M644/93/1]
 gi|254716003|ref|ZP_05177814.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M13/05/1]
 gi|256045546|ref|ZP_05448429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256112274|ref|ZP_05453195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 3 str. Ether]
 gi|256158440|ref|ZP_05456338.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M490/95/1]
 gi|256253860|ref|ZP_05459396.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94]
 gi|256263138|ref|ZP_05465670.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|256370345|ref|YP_003107856.1| peptidyl-prolyl cis-trans isomerase [Brucella microti CCM 4915]
 gi|260169365|ref|ZP_05756176.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99]
 gi|260562856|ref|ZP_05833342.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. 16M]
 gi|261214896|ref|ZP_05929177.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           3 str. Tulya]
 gi|261217772|ref|ZP_05932053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M13/05/1]
 gi|261220998|ref|ZP_05935279.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94]
 gi|261315013|ref|ZP_05954210.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M163/99/10]
 gi|261321380|ref|ZP_05960577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M644/93/1]
 gi|261751092|ref|ZP_05994801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5
           str. 513]
 gi|261758885|ref|ZP_06002594.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99]
 gi|265991973|ref|ZP_06104530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265993706|ref|ZP_06106263.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 3 str. Ether]
 gi|265996958|ref|ZP_06109515.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M490/95/1]
 gi|294851184|ref|ZP_06791857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. NVSL
           07-0026]
 gi|225641746|gb|ACO01660.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           ATCC 23457]
 gi|256000508|gb|ACU48907.1| peptidyl-prolyl cis-trans isomerase [Brucella microti CCM 4915]
 gi|260152872|gb|EEW87964.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. 16M]
 gi|260916503|gb|EEX83364.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           3 str. Tulya]
 gi|260919582|gb|EEX86235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94]
 gi|260922861|gb|EEX89429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M13/05/1]
 gi|261294070|gb|EEX97566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M644/93/1]
 gi|261304039|gb|EEY07536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M163/99/10]
 gi|261738869|gb|EEY26865.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99]
 gi|261740845|gb|EEY28771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5
           str. 513]
 gi|262551426|gb|EEZ07416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M490/95/1]
 gi|262764687|gb|EEZ10608.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 3 str. Ether]
 gi|263003039|gb|EEZ15332.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|263093040|gb|EEZ17190.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|294819773|gb|EFG36772.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. NVSL
           07-0026]
 gi|326409944|gb|ADZ67009.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           M28]
 gi|326539657|gb|ADZ87872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           M5-90]
          Length = 331

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R   E R +  +      +  I   +        ++ K+     E+ R   +  +  
Sbjct: 87  QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +     +IS+ +++A Y+K               ++   ++EA+   + L+ G KF  LA
Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202

Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +     G + S   LG FS+  +       + F+L         +   FGY +  + + +
Sbjct: 203 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408
                ++ +VK  I + +   +  E VK+             +E+ +    +  E S ++
Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321

Query: 409 KIVSIDLPL 417
                D P 
Sbjct: 322 DASEDDAPQ 330



 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +     D+++  +   V+   + +    +  ++A   +++  + G  F D+ K       
Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
            ++  +           +     F+         P++    Y V ++ + +       D+
Sbjct: 211 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               +  ++ ++     +  L+    +   D  I++ +
Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308


>gi|196037443|ref|ZP_03104754.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus NVH0597-99]
 gi|196031685|gb|EDX70281.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus NVH0597-99]
          Length = 285

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 81/198 (40%), Gaps = 14/198 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248
           Y ++    +      S+  + +  +K K+ Y        E  R+        + + K+ +
Sbjct: 57  YEMMAQDVITKKYKVSDDDVEKEVQKVKNQYGDQFTAVLENNRLKDEADFKKQIKFKLAM 116

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           +    ++  EK+ + ++ PEI+    ++  ++ EA E  + L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSVTEKDVKAHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L K G  +  +    GY I  +++ K      +
Sbjct: 176 SKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVKSPNGYHIIKLTDKKE--LKPY 231

Query: 365 QEVKKDIANQMRITKASE 382
            EVK  I   +   + ++
Sbjct: 232 DEVKDSIRKNLEEERIAD 249



 Score = 37.7 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKAHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+     P  E   +++          + V  P+G Y  +++ +      +  +EV   
Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVKSPNG-YHIIKLTDKKE--LKPYDEVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  + A+
Sbjct: 238 IRKNLEEERIAD 249


>gi|163940109|ref|YP_001644993.1| peptidylprolyl isomerase [Bacillus weihenstephanensis KBAB4]
 gi|229011588|ref|ZP_04168774.1| Foldase protein prsA 1 [Bacillus mycoides DSM 2048]
 gi|229059985|ref|ZP_04197359.1| Foldase protein prsA 1 [Bacillus cereus AH603]
 gi|229133173|ref|ZP_04262008.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST196]
 gi|163862306|gb|ABY43365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           weihenstephanensis KBAB4]
 gi|228650299|gb|EEL06299.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST196]
 gi|228719398|gb|EEL71002.1| Foldase protein prsA 1 [Bacillus cereus AH603]
 gi|228749743|gb|EEL99582.1| Foldase protein prsA 1 [Bacillus mycoides DSM 2048]
          Length = 283

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 199 NRHVPAIADPSNAVLTQWFEKYK----DNYR-APEYKRISYILFDVHEKEKKIEISNDEL 253
           N+ +      S+    +  E  K    D ++ A E   +          + +I +     
Sbjct: 60  NKALLDKYKVSDEEAKKQVEAAKEQMGDKFKVALEQVGLKNEDELKERMKPEIALEKAIR 119

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
               +K+ +    PE++ V  ++  ++K A E  + +  G+ F  LA++  +       G
Sbjct: 120 ATVTDKDVKDNHKPEMK-VSHILVKDEKTAKEVKEKINNGEDFTALAKQYSEDTGSKEQG 178

Query: 314 SFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                + P        ++ + L   G  +  I  S+GY I  V++ K      F EVK  
Sbjct: 179 GEIAGFAPGQTVKEFEEAAYKL-DAGQVSEPIKTSYGYHIIKVTDKKE--LKPFDEVKDT 235

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
           I   +   +  +   +  +++   L     +    +  K  
Sbjct: 236 IRKDLEQQRLQDATGKWKQQVINDLLKEADIKVTDKEFKDT 276



 Score = 40.4 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 126 DVKDNHKPEMKVSHILVKDEKTAKEVKEKINNGEDFTALAKQYSEDTGSKEQGGEIAGFA 185

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPIKTSY--------GYHIIKVTDKKE--LKPFDEVKDT 235

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q++ +  KE
Sbjct: 236 IRKDLEQQRLQDATGKWKQQVINDLLKE 263


>gi|49480029|ref|YP_035403.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49331585|gb|AAT62231.1| peptidyl-prolyl cis-trans isomerase (protein export protein)
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 285

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 76/206 (36%), Gaps = 30/206 (14%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240
           Y ++    +      S+  + +  +K K+ Y             +     +         
Sbjct: 57  YEMIAQDVITKKYKVSDDDVDKEVQKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLSM 116

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
            K  K  ++  +++  Y+        PEI+    ++  ++ EA E  + L+ G  F +LA
Sbjct: 117 NKAIKQSVTEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLEAGASFEELA 167

Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +++ + L        LG F+   +       + + L K G  +  +    GY I  +++ 
Sbjct: 168 KQESQDLLSKEKGGDLGYFNSGRMA-PEFETAAYKL-KIGQISNPVKSPNGYHIIKLTDK 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382
           K      + EVK  I   +   + ++
Sbjct: 226 KE--LKPYDEVKDSIRKNLEEERIAD 249



 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLEAGASFEELAKQESQDLLSKEKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+     P  E   +++      + +          Y  +++ +      +  +EV   
Sbjct: 188 SGR---MAPEFETAAYKL-----KIGQISNPVKSPNGYHIIKLTDKKE--LKPYDEVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  + A+
Sbjct: 238 IRKNLEEERIAD 249


>gi|154148224|ref|YP_001407264.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
 gi|153804233|gb|ABS51240.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
          Length = 271

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 11/163 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293
            ++   I++S+ E++  Y KNK+K+  P       ++   +  A +    L K       
Sbjct: 101 EKEFNNIKVSDKEIEDFYNKNKDKFIEPASIAASHILVEKEDNAKKIIADLSKLKGDALK 160

Query: 294 KKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           KKF ++A+E+    S       LG F KE +      ++   L K       +   FGY 
Sbjct: 161 KKFAEIAKEKSLDPSGKQNGGDLGYFVKEQMV-PEFGEAANKLKKGELTKTPVKTKFGYH 219

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           I   ++ K    +   EVK  I N ++  K     ++  K L+
Sbjct: 220 IILKNDAKDKKQLDLAEVKDHIKNIVKQEKFQADFEKKIKDLK 262


>gi|229195349|ref|ZP_04322120.1| Foldase protein prsA 1 [Bacillus cereus m1293]
 gi|228588123|gb|EEK46170.1| Foldase protein prsA 1 [Bacillus cereus m1293]
          Length = 287

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + F++ K  Y               E  +         EK  +  I++ EL+
Sbjct: 67  KVEDKEVDKKFDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA++  +         
Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +      ++ + L KK + +  +   FGY I  V++IK     SF++ K D
Sbjct: 178 DLGFFGPGKMVK-EFEEAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234

Query: 371 IANQMRITKASE 382
           I  ++   K+ +
Sbjct: 235 IKKEIVQKKSQD 246


>gi|149370006|ref|ZP_01889857.1| peptidyl-prolyl cis-trans isomerase [unidentified eubacterium
           SCB49]
 gi|149356497|gb|EDM45053.1| peptidyl-prolyl cis-trans isomerase [unidentified eubacterium
           SCB49]
          Length = 701

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 93/658 (14%), Positives = 203/658 (30%), Gaps = 87/658 (13%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56
           L  IR+ +      + +++    F    L+D L +  GSS      V ++   ++  + F
Sbjct: 4   LSKIRQKT----VFLIVIIAMALFAFV-LADVLKNGGGSSNKAQTRVATINDTELSQADF 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD----H 112
           +     ++    Q++G    +  A +V     + D  V    L +  E +G+  +     
Sbjct: 59  MA----QVQSTQQQMGPTATTASAVNV-----VWDREVKRVLLQEEFEKLGIRIEKDQLD 109

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK-------EYIDHYTKMLSRTDVV 165
             +   +A + LF  +   F  +     ++   +N          Y +   + +   + +
Sbjct: 110 AALAEGLAGNQLFTNELGLFDRNRMNEYISDMKLNNPAAYQQWLTYENGVIQSVLELNYM 169

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNY 224
            M  GG++ +    +Q  R+  +  +  Y+ +    +       S   +  +   +  ++
Sbjct: 170 NMIKGGLKSTLAEGEQQYRYDNDKINFQYVHVPYTSINDTEVAVSEDEIKSYVNDHAADF 229

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
                  I Y+ FD    ++ I      L+                          K+  
Sbjct: 230 EVEAQTDIEYVKFDEIASDEDIAAQEASLKEF--------------------LTAGKDNG 269

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
               + K  +       +     + +    FSK+    ++ AD   S  + G+       
Sbjct: 270 ADRVAFKDAENPEVYVNDYS-DFTYVDRWYFSKDIPAPLTAAD---SDLEVGEVVGPYKN 325

Query: 345 SFGYVIAHVSNIK---PSFTVSFQEVK--KDIANQMRITKASEKVKEDYKRLEEFLA-LG 398
              + +  V   +    S   S  +VK    +     I +  E+ K+    +   +    
Sbjct: 326 VTNFNLTRVLEKRQLADSVQTSHIQVKWAGTLGASSDIVRTKEEAKKRADSIFNVVKRSP 385

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV--FGKDDPLSKDHTV 456
           ++  E++             D       G E+  +    QL   +  F           V
Sbjct: 386 STFAEVASA---------TTDDVRNKANGGELGYLNPNVQLPETISEFVLQADKGDMKLV 436

Query: 457 ALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
               G ++     +K   PA   K   +   ++    + +T  EV S +++      K  
Sbjct: 437 ETEFGYHVLHVTDVKNIQPAY--KFAVISKKIEP---SDETINEVFSVSSKFEDAARKG- 490

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFF--GYDGISQVFSGPVEMVKCFPIENGLSYV 572
            +F  +      ++   N+I  +D            I+  F    E+           YV
Sbjct: 491 -DFTAVANESELTVRPVNKIGSLDANIPGLTNSRQIITWSFDEETEVGDVKRFNTPNGYV 549

Query: 573 VFKVTNSKVG----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
           V +VT               K    L       L+   +     Q   T ++  +Q  
Sbjct: 550 VVRVTRQSPKGVMSVADASAKVTPILRNKKKAALIKEKMNGADLQAIATANNVTVQTA 607



 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 75/215 (34%), Gaps = 25/215 (11%)

Query: 272 VEQLVFPNQKEADEAF------QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
           + + + P+ +  +E F      +   +   F  +A E   ++  ++        IP ++ 
Sbjct: 462 ISKKIEPSDETINEVFSVSSKFEDAARKGDFTAVANESELTVRPVNKIGSLDANIPGLTN 521

Query: 326 ADSIF--SLAKKGDFTPVIH--GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           +  I   S  ++ +   V       GYV+  V+   P   +S  +    +   +R  K +
Sbjct: 522 SRQIITWSFDEETEVGDVKRFNTPNGYVVVRVTRQSPKGVMSVADASAKVTPILRNKKKA 581

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
             +KE           G  +  I+    +       V      + G        + +++ 
Sbjct: 582 ALIKEKMN--------GADLQAIATANNVTVQTATAVSMGTPTIPGAG-----AEPKVVG 628

Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
             FGK+   ++   V   +     V++   +PA D
Sbjct: 629 AAFGKEA--NETTDVLAGNAGVFVVKVLAKVPATD 661


>gi|332525967|ref|ZP_08402108.1| putative exported isomerase [Rubrivivax benzoatilyticus JA2]
 gi|332109518|gb|EGJ10441.1| putative exported isomerase [Rubrivivax benzoatilyticus JA2]
          Length = 270

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 4/162 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               K   +++ + QAEY+K K      E R    ++   + EA +    +K G  F +L
Sbjct: 108 DSYRKTHPVTDADAQAEYDKFKAAASGTEYR-ARHILVETEDEAKKLIAQIKSGGSFEEL 166

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    F+K        + ++ +L K       +   FG+ I  + + 
Sbjct: 167 AKKHSKDPGSGENGGDLDFAKPDAYVPEFSQAMAALKKGEMTQTPVKSQFGWHIIRLDDT 226

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
           + +   +F +VK  I  ++   +  +  +E  K+       G
Sbjct: 227 REAQFPAFDDVKDQIKQRIEQARLQQYQEELRKKARTDYKFG 268



 Score = 37.7 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 46/130 (35%), Gaps = 2/130 (1%)

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGY 546
            +++      E   +A +L+ +  K G +F ++ K       +      +D  +   +  
Sbjct: 135 TEYRARHILVETEDEAKKLIAQI-KSGGSFEELAKKHSKDPGSGENGGDLDFAKPDAYVP 193

Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
           +    + +     +   P+++   + + ++ +++       D     + Q + +  L   
Sbjct: 194 EFSQAMAALKKGEMTQTPVKSQFGWHIIRLDDTREAQFPAFDDVKDQIKQRIEQARLQQY 253

Query: 607 IAYLKSQYSV 616
              L+ +   
Sbjct: 254 QEELRKKART 263


>gi|307243271|ref|ZP_07525442.1| PPIC-type PPIASE domain protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306493399|gb|EFM65381.1| PPIC-type PPIASE domain protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 255

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 6/155 (3%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEE 302
             +EI++DE  A YE++K+++   E  + + ++  N++ A E  + + K +  F   A E
Sbjct: 91  AAVEITDDEKLAYYEEHKDEFKEDESASAKHILVDNEELALEIEKKINKKEVSFEDAAVE 150

Query: 303 QGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
                S     SLG+F +  +      +++F+L   G  +  +   FGY +  V + K +
Sbjct: 151 YSSCPSKSNGGSLGTFGRGQMV-PEFEEAVFTLP-VGKVSSPVKTQFGYHLILVDDRKEA 208

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
             + +++ KKD+   +   K +E        L E 
Sbjct: 209 RQLEYEDCKKDVEQSLAFKKQNEAFLAKLTDLTEK 243


>gi|196044409|ref|ZP_03111645.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB108]
 gi|196025048|gb|EDX63719.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB108]
          Length = 285

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 76/206 (36%), Gaps = 30/206 (14%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240
           Y ++    +      S+  + +  +K ++ Y             +     +         
Sbjct: 57  YEMIAQDVITKKYKVSDDDVEKEVQKVRNQYGDQFTAVLENNRLKDEADFKKQIKFKLAM 116

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
            +  K  ++  E++A Y+        PEI+    ++  ++ EA E  + L  G  F +LA
Sbjct: 117 NEAIKKSVTEKEVKAHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167

Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +++ + L        LG F+   +       + + L K G  +  +    GY I  +++ 
Sbjct: 168 KQESQDLLSKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVKSPNGYHIIKLTDK 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382
           K      + EVK  I   +   + ++
Sbjct: 226 KE--LKPYDEVKDSIRKNLEEERIAD 249



 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           EVK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 EVKAHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+     P  E   +++          + V  P+G Y  +++ +      +  +EV   
Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVKSPNG-YHIIKLTDKKE--LKPYDEVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  + A+
Sbjct: 238 IRKNLEEERIAD 249


>gi|224372671|ref|YP_002607043.1| foldase protein PrsA [Nautilia profundicola AmH]
 gi|223588937|gb|ACM92673.1| foldase protein PrsA [Nautilia profundicola AmH]
          Length = 286

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 83/188 (44%), Gaps = 16/188 (8%)

Query: 217 FEKYKDNYRAPE-YKRISYILFDVHEKEK--KIEISNDELQAEYEKNKEKYF-SPEIRTV 272
           ++K K   + P+    +  +  D   K+K   ++IS+ E++  YE+NK+ YF +      
Sbjct: 93  YKKAKSVEKTPQFQALVKKMAVDYWLKQKLNNMKISDAEVKKFYEENKDIYFKTTPKVKA 152

Query: 273 EQLVFPNQKEADEAFQSLKK------GKKFIQLAEEQGK---SLSDISLGSFSKEYIPDV 323
             +V  ++K A++    LK        +KF +LA++       ++   LG F  + +   
Sbjct: 153 RHIVVKDEKTAEKLINELKGLHGKALEEKFAELAKKYSTGPTKVNGGELGWFDPKQMVQP 212

Query: 324 SLADSIFSLAKKGDFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             A+++  + K G+ T   +   FGY +  V        +   EVK  I   ++  K  +
Sbjct: 213 -FAEAVNKM-KPGELTLKPVKTRFGYHVILVEEKNEKNYMPLNEVKLQIIEYLKRAKLQK 270

Query: 383 KVKEDYKR 390
           ++++    
Sbjct: 271 EIQKLKDS 278


>gi|144900459|emb|CAM77323.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 273

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 62/153 (40%), Gaps = 7/153 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K EI+   ++A Y+         E      ++   + +A      LKKG  F + A+ + 
Sbjct: 109 KAEITPAAVKAAYDGYLASAKPEEEVRARHILTETEDQAKAVIAELKKGADFTETAKAKS 168

Query: 305 KSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPS 359
           K  S       LG F++  +     + + F++ K GD +   +   FG+ +  V + + +
Sbjct: 169 KDPSAKQNGGDLGYFAQGEMV-PQFSSAAFAM-KVGDLSEAPVQSQFGWHVIKVEDRRQA 226

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
              + ++    I  ++    A + V +   + +
Sbjct: 227 TPPTLEQATPAIREELAEKLAQKLVGDVRSKAK 259


>gi|16800550|ref|NP_470818.1| hypothetical protein lin1482 [Listeria innocua Clip11262]
 gi|46396989|sp|Q92BR2|PRSA1_LISIN RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|16413955|emb|CAC96713.1| lin1482 [Listeria innocua Clip11262]
          Length = 294

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 91/253 (35%), Gaps = 27/253 (10%)

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--------- 224
            +   L +A +  + N  V  +    + +      +   +   ++KY++ Y         
Sbjct: 35  VTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSFESTLS 93

Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                +    + + Y L      E  + +S  +L+  Y+  +          V  ++  +
Sbjct: 94  SNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPNIT------VRHILVDD 147

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKG 336
           +  A E    LK G+KF  LA+E     +  + G     + P   D +   + ++L  K 
Sbjct: 148 EATAKEIQTKLKNGEKFADLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALKNKD 207

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDYKRLEE 393
           D + ++  ++GY +  +       T + ++       I +Q+     +  +K++ K    
Sbjct: 208 DVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIKSQLTSENMTAALKKELKAANI 267

Query: 394 FLALGTSMDEISR 406
            +      D  + 
Sbjct: 268 DIKDSDLKDAFAD 280


>gi|319650163|ref|ZP_08004311.1| post-translocation molecular chaperone [Bacillus sp. 2_A_57_CT2]
 gi|317398145|gb|EFV78835.1| post-translocation molecular chaperone [Bacillus sp. 2_A_57_CT2]
          Length = 298

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 88/229 (38%), Gaps = 31/229 (13%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN------ 223
            G    + L +  K  Y E    + I    + +    + ++  L +  ++ K        
Sbjct: 36  SGNITKDELYEAMKEKYGEQALQELIY--EKVLSDKYEVTDEELNEKIDELKQQLGANFE 93

Query: 224 -------YRAPE--YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                  Y+  E   +     L       K IE +  E++  Y+  K +           
Sbjct: 94  MALMQYGYKDEEDLRETFKTGLLQEKAAIKDIEATEKEVKEYYDNYKPEI------KARH 147

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
           ++  ++K ADE  + L +G KF  LA    ++ G + +   LG F    +      ++ +
Sbjct: 148 ILVEDEKTADEVKKKLDEGGKFEDLATEYSKDPGSAANGGDLGWFGPGKMV-PEFEEAAY 206

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           +L    + +  +    G+ I  V+  K     SF E+KK++  Q++++K
Sbjct: 207 AL-DVNEISAPVKSEHGFHIIQVTEKKEK--KSFDEMKKEMEYQVKVSK 252


>gi|294340130|emb|CAZ88501.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas
           sp. 3As]
          Length = 262

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 77/157 (49%), Gaps = 6/157 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
           +   +K  I++ +++AEY+K  + + S E +  + ++ P++KEA +    LKKG KF +L
Sbjct: 105 NAYLQKHPITDAQIKAEYDKFVKSFGSTEYK-AQHILVPSEKEAQDIIAQLKKGAKFSEL 163

Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355
           A++  K     + G       P+      A ++ +L K G +T   +   FG+ +  +  
Sbjct: 164 AKKYSKDTGSAANGGDLGWSTPNNYVPPFAKALEAL-KPGQYTQTPVQSQFGWHVIKLDA 222

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +P+   +  ++K  I  +++  + ++   E   + +
Sbjct: 223 TRPAKAPTLDQLKPQIQAELQRQEVTKYQDELRAKAK 259



 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 16/116 (13%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +  + +V  + +P S   +        ++++ G  V         L + + + L+S   +
Sbjct: 23  AQNIATVNGKPIPQSLADSV----ANSMAKQQGQAVTP------QLKEMVKNELISREVM 72

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
            Q  + +GL+     V  EI        + N     +F + L +  I + +    Y
Sbjct: 73  VQEADKLGLDK-ETAVQDEIRI-----ARQNILIRALFNAYLQKHPITDAQIKAEY 122



 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/137 (9%), Positives = 45/137 (32%), Gaps = 2/137 (1%)

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NE 540
           V +    ++K          +A  ++ +  K+G  F ++ K       +      +  + 
Sbjct: 126 VKSFGSTEYKAQHILVPSEKEAQDIIAQL-KKGAKFSELAKKYSKDTGSAANGGDLGWST 184

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
              +       + +         P+++   + V K+  ++       D+    +   + +
Sbjct: 185 PNNYVPPFAKALEALKPGQYTQTPVQSQFGWHVIKLDATRPAKAPTLDQLKPQIQAELQR 244

Query: 601 DLLDSVIAYLKSQYSVT 617
             +      L+++  +T
Sbjct: 245 QEVTKYQDELRAKAKIT 261


>gi|291612516|ref|YP_003522673.1| SurA domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291582628|gb|ADE10286.1| SurA domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 433

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 61/433 (14%), Positives = 135/433 (31%), Gaps = 67/433 (15%)

Query: 15  KIFLVVLFVPFLIWG--LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           K    +  + F            + S     V V    +      N       M+ ++  
Sbjct: 4   KKIFALFLIVFATVASAAESQKQATSLDRIDVIVNDDVITHRELENRVASVTKMLQRQ-- 61

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
               +       L++++L+ +++   L Q+ ++ GL  D G++   I R      + NKF
Sbjct: 62  ---KTALPEKSILERQVLERMITEMLLAQYAKESGLRIDDGQLDKTILRI----AQQNKF 114

Query: 133 -SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPSNLLLDQAKRFYFEN 189
                F ++L R+G +  E+ +     +    +    V    +   N + +       + 
Sbjct: 115 PDVAAFRAKLTRDGTDYNEFREEIRNEIIAVRLREREVDSKLVISENDIDNYLNNQAHQE 174

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
              + + L++  V      +   +   +    +   A       +        + +  + 
Sbjct: 175 GKGEELQLSHILVVVPEQATADKIQS-YRDRAEQALAKLRAGAPFAQVAAGYSDAQDALK 233

Query: 250 NDEL------------QAEYEKNKEKYFSPEIR-------------------------TV 272
             EL                +K K    S  +R                           
Sbjct: 234 GGELGWRPADRLPPLFAEALQKMKPGDLSDVLRSPSGFHIIKLLDRRSNDAPVVITQTHA 293

Query: 273 EQLVFPN-----QKEA----DEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYI 320
             ++          EA     E  Q + KG  F + A    E G +     LG  S    
Sbjct: 294 RHILIKTSELVTDSEAKSRLQEIKQRIDKGASFAEQARLYSEDGSAPQGGDLGWLSPGET 353

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                  ++ +L K G  + ++   FG+ +  V   + +   S ++ ++   N +R  K+
Sbjct: 354 V-PEFESAMNAL-KVGQVSGLVQTGFGWHLIQVLERRNTDV-SVEQKRQRARNAIRTVKS 410

Query: 381 SEKVKEDYKRLEE 393
            E  ++  ++L +
Sbjct: 411 DEAFQDWLRQLRD 423



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 81/240 (33%), Gaps = 26/240 (10%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           + +R      I  +     E + K+ IS +++         +    E   +  ++    +
Sbjct: 132 NEFREEIRNEIIAVRLREREVDSKLVISENDIDNYLNNQAHQEGKGEELQLSHILVVVPE 191

Query: 282 EA------------DEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLA 326
           +A            ++A   L+ G  F Q+A     +   L    LG    + +P    A
Sbjct: 192 QATADKIQSYRDRAEQALAKLRAGAPFAQVAAGYSDAQDALKGGELGWRPADRLP-PLFA 250

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +++  + K GD + V+    G+ I  + + + +       V      +  + K SE V +
Sbjct: 251 EALQKM-KPGDLSDVLRSPSGFHIIKLLDRRSNDAPV---VITQTHARHILIKTSELVTD 306

Query: 387 -----DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
                  + +++ +  G S  E +R         P     G    G+ V         L 
Sbjct: 307 SEAKSRLQEIKQRIDKGASFAEQARLYSEDG-SAPQGGDLGWLSPGETVPEFESAMNALK 365


>gi|197124850|ref|YP_002136801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
 gi|196174699|gb|ACG75672.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
          Length = 317

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 103/354 (29%), Gaps = 92/354 (25%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
            V  V  + +   +     +        +        +A    L +++LD+LV  A L Q
Sbjct: 34  AVAVVNGEPIAPDAVARELRDAQAGAEGQ-------GQATGDVLRRRVLDDLVDRALLLQ 86

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
                 +     +V     R          F        LA+E +++ E        L+ 
Sbjct: 87  QARARSIVVGQDQVERAFLRLRA-EYPGTHFDD-----LLAQERLSQAELKARLKDQLTV 140

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
             +                                     V       +A + +++ ++ 
Sbjct: 141 ERLFEQ---------------------------------EVFPQVQVVDAEVERYYAEHG 167

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
             ++ PE                                           V Q+V  +++
Sbjct: 168 AEFQEPERV----------------------------------------HVLQIVVASRE 187

Query: 282 EADEAFQSL-KKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           EA +  + L +  + F ++A     +    S   LG   +       + D+ FSL     
Sbjct: 188 EATQVREKLRRNPQTFAEVARRSSIAPEGKSGGDLGLIGRGAGF-PEVFDTCFSLP-VNV 245

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            + V    +G+ +  V   KP+   + ++ + +IA ++   K +    E  + L
Sbjct: 246 ISDVTPSPYGFHLFKVVEKKPAQRRTLEQARAEIAEKLGREKRAGAQAEYLEAL 299


>gi|42780220|ref|NP_977467.1| peptidylprolyl isomerase [Bacillus cereus ATCC 10987]
 gi|42736139|gb|AAS40075.1| protein export protein prsA [Bacillus cereus ATCC 10987]
          Length = 287

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 80/208 (38%), Gaps = 17/208 (8%)

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFD 238
              +    E   +    ++ + V    D     +   F+   K      E  +       
Sbjct: 51  QVLQSMVMEKVLIKNYKVDEKEVDKKYDEMKKQVGDQFDTLLKQQGLKEETLKNGVRAEL 110

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
             +K  +  I++ EL+  Y+        PEI+    ++  ++  A +  + L +GK F +
Sbjct: 111 AQDKAIEKTITDKELKENYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEE 161

Query: 299 LAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA++  +          LG F    +      D+ + L KK + +  +   FGY I  V+
Sbjct: 162 LAKQYSEDTGSKEKGGDLGFFGPGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVT 219

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE 382
           +IK     SF++ K DI  ++   K  +
Sbjct: 220 DIKEPE-KSFEQSKADIKKELVAKKKQD 246



 Score = 38.0 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 96/259 (37%), Gaps = 54/259 (20%)

Query: 247 EISNDELQAEYEKNKEKYFSP--EIRTVEQLVFP----NQKEADEAFQSLKK--GKKFIQ 298
           +I+ +E    Y + K+K  S   +   +E+++      ++KE D+ +  +KK  G +F  
Sbjct: 34  DITKEE---FYNEMKQKGGSQVLQSMVMEKVLIKNYKVDEKEVDKKYDEMKKQVGDQFDT 90

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           L ++QG     +  G    E   D ++  +I                             
Sbjct: 91  LLKQQGLKEETLKNG-VRAELAQDKAIEKTI----------------------------- 120

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
               + +E+K++   +++ +    K +   K+++E L  G S +E++++    +      
Sbjct: 121 ----TDKELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G    GK V         L +    +   S+          Y  +++ +     ++ 
Sbjct: 177 GDLGFFGPGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EKS 227

Query: 479 LEEVLTDVKKDWKTVKTAE 497
            E+   D+KK+    K  +
Sbjct: 228 FEQSKADIKKELVAKKKQD 246


>gi|99034260|ref|ZP_01314318.1| hypothetical protein Wendoof_01000886 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 212

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 93/224 (41%), Gaps = 16/224 (7%)

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
           EI     +    +  VD +GKD  G  V        L+  +F ++    K +   + D +
Sbjct: 1   EILSEYNLPIQTIGPVDASGKDQSGNNVGD---SGDLISFIFSREKD-QKGYFKGVGD-A 55

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + V+I +  P + +  EE      + W++    E +     ++ ++  ++     D+ +
Sbjct: 56  VVSVKIVDIFPPKLQSFEEGKALAVELWRSEFIKERMFKFGQEVAVQLREK----TDLEE 111

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSK 580
             G  L+   Q++R   + + + +  + ++F+         PI+  N +   V K  +S 
Sbjct: 112 IQGVELVKGQQMHRNKVDQQNYPFSFVEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSS 171

Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
            G +   D     +       L + +I+YL+S+Y V V+  ++ 
Sbjct: 172 NGKLNTLDTGKRVMI-----SLKEQLISYLESKYKVEVNHAILD 210


>gi|288555301|ref|YP_003427236.1| post-translocation chaperonin [Bacillus pseudofirmus OF4]
 gi|288546461|gb|ADC50344.1| protein secretion (post-translocation chaperonin) [Bacillus
           pseudofirmus OF4]
          Length = 304

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 94/239 (39%), Gaps = 16/239 (6%)

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI-VLNNRHVPAI 205
            E E+ D   +   +  +  M    +               E    ++   LN      +
Sbjct: 41  TEAEFYDKMKERYGQATLEEMVQRVLIADAKDELGVTEEEIEEGIENFKGQLNVETDEEL 100

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
            +  +A     +E   D++   E   +  I+ D    + ++ ++ ++ QA YE+N+E Y 
Sbjct: 101 LEILDAQFNMTYES-MDDFV--EDMIVPPIVLD-KLAKSEVNVTEEDKQAYYEENEELY- 155

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPD 322
             E      ++  +++ A+E  + ++ G+ F +LA E    G +     LG F    +  
Sbjct: 156 -AEQVQASHILVEDEETANEVLEKIEAGEDFGELAAEYSMDGSATRGGDLGFFGTGEMV- 213

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
               ++ F L + G+ +  +   +GY I  V++ K      +++   DI   +   ++ 
Sbjct: 214 PEFEEAAFGL-EVGEVSDAVESQYGYHIIKVTDRKSG----YEDFADDIEQALIQEQSK 267


>gi|110597632|ref|ZP_01385917.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340752|gb|EAT59229.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 702

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 67/641 (10%), Positives = 200/641 (31%), Gaps = 76/641 (11%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +  +R  +   +  +    L +    WG+ +     + ++    +  + V  + +   +K
Sbjct: 4   MSNLRDKTHIILYTLMAAFLALIVFEWGM-NFTGFTTKANQAGKINGKTVSMAEYDEVYK 62

Query: 62  QELGMISQKI-GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                  +   G  +  E    + L ++  + +V    L+Q  E   +      V   + 
Sbjct: 63  NFTANYRRANPGAELTPEA--ELSLREQAWNTVVDQTLLEQQFEKFSISLQDQEVVEALE 120

Query: 121 RSPLFHGKDNKFSH----DVFVSRLAREGINEK------EYIDHYTKMLSRTDVVGMFVG 170
            S         FS      +   +L     + +      +      + L    ++     
Sbjct: 121 SSAPPQVIRQNFSDPATGALDRKKLDSARRDPRNKELWLQIEKIVRQELKVNKLIRALQT 180

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--PSNAVLTQWFEKYKDNYRAPE 228
               +   +D      F   S  +I +      A ++       + ++++ +K+ +R   
Sbjct: 181 LDHVTGREVDDIINRQFTRFSASFIPVPVSFAGADSNFPVKEEEIKKYYDDHKELFRQAP 240

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            ++  ++ F +    K     +  ++ E E  + ++ +P +                   
Sbjct: 241 SRKADFVFFPLTPSAK----DSLAVRTELESIRAEFSAPTVND----------------- 279

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHGSF 346
                       + Q    + I++     ++ P  +   ++F+ +  K G     +    
Sbjct: 280 --------SDYVKVQSDRPTGINVTYNRSDFSP--AAGATLFNPSNLKPGTIVGPLADRG 329

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
            Y +  +  +  S     +     +          +KV+E    + + L  G   + ++R
Sbjct: 330 EYRMIKIKQVTTSRQPVARASHILLRFNPASRAEVQKVRELSLLISQQLQAGVPFESLAR 389

Query: 407 REKI---VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
           +       +++   + +  ++             +    VF    P +    V    G +
Sbjct: 390 KYSADPGSALNGGDIGWFSRER---------MVPEFAAAVFNA-RPGAVIGPVQTQFGLH 439

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWK-TVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
           + +++     +       V +++ ++ + + ++ E V  +A  L  + S + K F     
Sbjct: 440 I-IKVTGFDQSAV-----VCSEIVRNIRPSTESVESVRRQA--LAFQASAKEKGFDQTAA 491

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
                +  T +  +     +    D ++       E      +E    + V ++T     
Sbjct: 492 AAKLRIDKTGEFGKHMAVAQIGYSDKVTAFAFKASEGDLSDLLETEKGFYVMRLTEKNDT 551

Query: 583 -----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                    K +  + L +      L+  ++ +     +++
Sbjct: 552 GYRLLDQDMKSRITAELVREKKGAALEKKLSAMAKGAGMSI 592


>gi|86160750|ref|YP_467535.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85777261|gb|ABC84098.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 338

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 97/346 (28%), Gaps = 71/346 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V            LG+ +                  ++  D +VS    
Sbjct: 37  DRVAAIVNGDVVTLQELEQR-AAALGLAAADALPAGPERDRARAEALRRAFDQVVSDKLF 95

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            +  +++ +E    +V   I        K N F+     S LA EG +  +Y     + L
Sbjct: 96  AEKAKELEIEVTEKQVDDAIEGV----KKQNGFTDAQLESALASEGYSMADYRTRIRREL 151

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                                                L    V      S   L  +++ 
Sbjct: 152 QN---------------------------------FSLLQYKVAGKIKTSEEDLRNYYQS 178

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +   +   +  R+ +I     E   K                            Q     
Sbjct: 179 HPQEFDGEDEVRVRHIFIPFPEGGGK----------------------------QAQAQA 210

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           + E     Q LK G+ F  +A+       +     LG   +  I   +L D+ F+L K G
Sbjct: 211 RAEGQRVLQRLKTGEDFGAVAKAVSRGPSAEEGGELGWLKRGTI-HRTLEDAAFAL-KTG 268

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           + + ++    G  I  V   +     SF++ +++I  ++   +A  
Sbjct: 269 EISGLVEAGPGVHILKVEERRRGGGKSFEQAREEIRQRLGEEQAEN 314



 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 5/129 (3%)

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
           K A+  +    Q VL+  K G++F  + K +               +            F
Sbjct: 204 KQAQAQARAEGQRVLQRLKTGEDFGAVAKAVSRGPSAEEGGELGWLKRGTIHRTLEDAAF 263

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAY 609
           +     +    +E G    + KV   + G      Q +++    L +   ++     +A 
Sbjct: 264 ALKTGEISGL-VEAGPGVHILKVEERRRGGGKSFEQAREEIRQRLGEEQAENYRQQYVAE 322

Query: 610 LKSQYSVTV 618
           L+    + V
Sbjct: 323 LRRDALIDV 331


>gi|313159819|gb|EFR59175.1| PPIC-type PPIASE domain protein [Alistipes sp. HGB5]
          Length = 677

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 85/696 (12%), Positives = 210/696 (30%), Gaps = 109/696 (15%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L  +R      V  I +    + F++  L   +        V  +  +K+ +S     + 
Sbjct: 4   LNTLRTKF-GIVLSIVIAGALLAFILS-LKTEMGFSGNDPRVGVIDGEKINYSE----YY 57

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            +   +  + G   ++E+ +S  L       L+    L    + +GL          ++ 
Sbjct: 58  NQYEQVKAQSGAQESNEQ-QSAMLANAAWQALIGKYVLTPGFDKMGLRVTEPERMSMVSG 116

Query: 122 S-------PLFHGK-DNKFSHDVFVSRLAREGINEKE------YIDHYTKMLSRTDVVGM 167
                     F      +++       L+    N +         +           +G+
Sbjct: 117 QHPSQAFYNAFADPRTGEYNVAAVHQFLSEAEANAQAQQAWAQLNEQARMEREVAKFLGL 176

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRA 226
             GG+  ++L +           +  +       VP  +    ++ +  ++  +K+ ++ 
Sbjct: 177 IKGGVYVNSLEVANGVNSANNTYAGKWAGKKYSAVPDSLIQLKSSDIKAYYNSHKNMFKQ 236

Query: 227 PEYKRISYILFDVHEKEKKI---------------------------------------- 246
              + +SY++F+V   +  +                                        
Sbjct: 237 TPSRALSYVVFEVSPTDDDMLALEKSVAEVGAQFAATEELKSFVRANRNGKIADNYVSAK 296

Query: 247 EISNDELQAEYE----------------KNKEKYFSPEIRTVEQLVFP--NQKEADEAFQ 288
           ++S +E +A  +                +  +    P+   +  +V P   +  AD    
Sbjct: 297 QLSEEEAKALLDGATYGPVLKNNEWTMARALDTKIVPDSMGIRHIVLPYTQEALADSLLT 356

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA---DSIFSLAKKGDFTPVIHGS 345
            LK G  F Q+A +     +  + G      +P  + +    +  + AK GD   +  G 
Sbjct: 357 VLKGGADFAQVAAQYSVYDATAANGGEV-GVMPFSAFSGEFAAALANAKTGDIVKIASGD 415

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
                  +  +  +   S       I   +  + A+ +  + + +   F        E  
Sbjct: 416 A----IQLMQVYRADKPSKHVQVASITYPVEASAATRR--DIHNQAGTFSVNAKGSVEAF 469

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-SYM 464
                 +   P +    +  +   +  +     +    +G +     D +   P G  Y+
Sbjct: 470 NDAASAAAVTPRIASLAQGER--TIRGLEDSRDVARWAYGAEVG---DVSEIFPVGKDYV 524

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
              + E        LE+V   ++      K       K + +V E    G    +  K+L
Sbjct: 525 IAMLTEIDDNEFAPLEKVSAQIRAQVLRDK-------KYDYIVKEL--SGSTLDEQAKSL 575

Query: 525 GASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
           G  +   + +          G++   I  + S   + V   P++      VF+V + +  
Sbjct: 576 GTEVADFDNVTFGAFYVNGPGFEPRLIGAISSTTEKGVLSAPVKGLSGVYVFEVDDIQTS 635

Query: 583 PVQEKDKFISYLTQMMNKDLLDSV-IAYLKSQYSVT 617
             ++  +      Q M + +     +  ++    + 
Sbjct: 636 D-KQTAEGEKVRAQAMAESMAQQFSVQAIQQMAKIQ 670


>gi|229132060|ref|ZP_04260923.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST196]
 gi|228651460|gb|EEL07432.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST196]
          Length = 285

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 82/198 (41%), Gaps = 14/198 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248
           Y ++    +      S+  + +  EK KD Y        E  R+       ++ + K+ +
Sbjct: 57  YEMVAQDVITKKYKVSDDAVDKEVEKAKDQYGEQFKATLENNRLKDEEDFKNQIKFKLAL 116

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           +    Q+  EK+ + ++ PEI+    ++  N+ EA E  + L  G  F +LA+++ + L 
Sbjct: 117 NEAIKQSVTEKDVKDHYKPEIK-ASHILVSNENEAKEIKKKLDTGTSFEELAKQESQDLA 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              +   LG F    +       + + L K G  +  +    GY I  +++ K      +
Sbjct: 176 SKDNGGDLGYFGAGKMT-PEFEKAAYKL-KPGQISNPVKSPNGYHIIKLTDKKD--LQPY 231

Query: 365 QEVKKDIANQMRITKASE 382
            +VK  I   +   + ++
Sbjct: 232 DKVKDSIRKDLEEERLAD 249



 Score = 38.4 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  GTS +E++++E   S DL   D  G   
Sbjct: 128 DVKDHYKPEIKASHILVSNENEAKEIKKKLDTGTSFEELAKQE---SQDLASKDNGGDLG 184

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
                   P  E+  +++     P    + V  P+G Y  +++ +      +  ++V   
Sbjct: 185 YFGAGKMTPEFEKAAYKL----KPGQISNPVKSPNG-YHIIKLTDKKD--LQPYDKVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++KD +  + A+
Sbjct: 238 IRKDLEEERLAD 249


>gi|218848095|ref|YP_002454772.1| foldase protein PrsA [Bacillus cereus G9842]
 gi|218546226|gb|ACK98619.1| foldase protein PrsA [Bacillus cereus G9842]
          Length = 299

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 94/245 (38%), Gaps = 32/245 (13%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----- 224
            G    + L ++      +    D I L    +      S+  +    ++ K  +     
Sbjct: 40  SGTISKDELYNRMVDKIGQRTLDDMITLTV--LQKKYKVSDGEIDDEIKRLKSEFGNSFN 97

Query: 225 --------RAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                      E  +  I           + ++I + +L+A YE+ K     PEIR V  
Sbjct: 98  DFLSQNGVNNEEQLKDVIKLDKLKQKLALEHLKIQDKDLKALYEQKK-----PEIR-VSH 151

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIF 330
           ++  ++  A +    +  G+ F  LA+E  + ++       +G F +  +   +  D+  
Sbjct: 152 ILVSDETLAKDIKSKIDSGEDFGSLAKEFSQDIATKEKGGDIGYFKEGDMV-QAFQDAAR 210

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYK 389
            L K G+ +  +   FGY +  + + K     SF+++K  + +++   K    K+  + +
Sbjct: 211 KL-KVGEVSQPVKTDFGYHVIKLLDEK--KLPSFEQMKPQLQSELISNKMDQAKINAEIQ 267

Query: 390 RLEEF 394
           +L + 
Sbjct: 268 KLLDK 272


>gi|15966379|ref|NP_386732.1| hypothetical protein SMc02451 [Sinorhizobium meliloti 1021]
 gi|307313034|ref|ZP_07592661.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           meliloti BL225C]
 gi|307321040|ref|ZP_07600446.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           meliloti AK83]
 gi|15075650|emb|CAC47205.1| Conserved hypothetical protein, contains a peptidyl-prolyl
           cis-trans isomerase signature [Sinorhizobium meliloti
           1021]
 gi|306893315|gb|EFN24095.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           meliloti AK83]
 gi|306899353|gb|EFN29987.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           meliloti BL225C]
          Length = 284

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 59/147 (40%), Gaps = 4/147 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++++E++A Y+K        E      ++   + EA +  + L  GK F  LA+ +   
Sbjct: 115 AVTSEEVKARYDKEVAAIPPQEEVKARHILVKTEDEAKDVIKELDAGKNFADLAKAKSTD 174

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            +      LG F+K  +       + F+L K       +   FG+ +  + + +P    +
Sbjct: 175 PNKEEGGDLGYFTKGRMV-PEFETAAFALEKGAYTKTPVKTQFGFHVILIEDKRPQAPPT 233

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
            ++V+  +   +   K  E +    + 
Sbjct: 234 LEQVEPQVRQLVMRDKYLELLNSAKES 260


>gi|313618921|gb|EFR90776.1| foldase protein PrsA [Listeria innocua FSL S4-378]
          Length = 294

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 91/253 (35%), Gaps = 27/253 (10%)

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--------- 224
            +   L +A +  + N  V  +    + +      +   +   ++KY++ Y         
Sbjct: 35  VTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSFESTLS 93

Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                +    + + Y L      E  + +S  +L+  Y+  +          V  ++  +
Sbjct: 94  SNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDIT------VRHILVDD 147

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKG 336
           +  A E    LK G+KF  LA+E     +  + G     + P   D +   + ++L  K 
Sbjct: 148 EATAKEIQTKLKNGEKFADLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALKNKD 207

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDYKRLEE 393
           D + ++  ++GY +  +       T + ++       I +Q+     +  +K++ K    
Sbjct: 208 DVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIKSQLTSENMTAALKKELKAANI 267

Query: 394 FLALGTSMDEISR 406
            +      D  + 
Sbjct: 268 DIKDSDLKDAFAD 280


>gi|114762082|ref|ZP_01441550.1| PPIC-type PPIASE domain protein [Pelagibaca bermudensis HTCC2601]
 gi|114545106|gb|EAU48109.1| PPIC-type PPIASE domain protein [Roseovarius sp. HTCC2601]
          Length = 286

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 60/152 (39%), Gaps = 5/152 (3%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
            +  +S++ +QA YE +     + +      ++   +++A    + L+ G  F +LA E+
Sbjct: 115 AETSVSDEAVQAAYEADYTDAETGKEFNASHILVETEEDAQALVEELEGGADFAELAREK 174

Query: 304 GKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
               S      LG F+   + +         + + G  +  +   FG+ +  ++  +   
Sbjct: 175 STGPSGPNGGELGWFAAGMMVEP--FQEAVEMLEVGAVSEPVQTQFGWHVIKLNETRAKE 232

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             +  EV+ +I   ++     + + E     E
Sbjct: 233 APALDEVRGEIEMSLQQQAVEKYIDETLASAE 264


>gi|311070719|ref|YP_003975642.1| hypothetical protein BATR1942_18970 [Bacillus atrophaeus 1942]
 gi|310871236|gb|ADP34711.1| hypothetical protein BATR1942_18970 [Bacillus atrophaeus 1942]
          Length = 306

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 17/209 (8%)

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWF---EKYKDNYRAPE-------YKRISYILFDVHE 241
           ++  V+           S++ + + F   +   +++   E         +I Y +     
Sbjct: 79  INVRVVEQLAKKNKLKVSDSDIEREFLLIKAVNNSFYEDEHTTEKEWKDQIRYNILLEEL 138

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
             K I+IS  E+++ Y KNKE Y   +   +  +V  +Q+EA+   + LK G  F  +A 
Sbjct: 139 LTKDIDISEKEMKSFYTKNKELYQFDDSYRIRHIVVKDQEEANRVLKDLKGGSSFEAVAA 198

Query: 302 EQGKS----LSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           E+            LG  +  ++ IP   + ++  +L +    T  I  S GY I  +  
Sbjct: 199 ERSTDRYTSPYGGDLGFVTEAQDSIPAAYITEAR-TLKENEWSTEPIKVSKGYAIIQLKE 257

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKV 384
              + T ++ EVK  I  Q+ + +  +K 
Sbjct: 258 KLNARTFTYDEVKDQIKRQIAMDQLGDKA 286


>gi|229043011|ref|ZP_04190742.1| Foldase protein prsA 2 [Bacillus cereus AH676]
 gi|228726351|gb|EEL77577.1| Foldase protein prsA 2 [Bacillus cereus AH676]
          Length = 285

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249
           Y ++    +       +  + +  EK K  Y    +    +Y L D  + + +I+     
Sbjct: 57  YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116

Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           N+ ++    EK+ + ++ PEI+    ++  ++ EA E    L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L   G  +  +  S GY +  +++ K      +
Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKA--LKPY 231

Query: 365 QEVKKDIANQMRITKASEKVKED 387
            EVK  I   +   + ++ V   
Sbjct: 232 DEVKDSIRKNLEEERTADPVFSK 254



 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKK--ALKPYDEVKDS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  +TA+ V SK  +L+ E  K+
Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263


>gi|170692424|ref|ZP_02883587.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           graminis C4D1M]
 gi|170142854|gb|EDT11019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           graminis C4D1M]
          Length = 259

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 6/146 (4%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK   S+ E+ A Y    +     E   +  ++  N+++A +    +K G  F  L
Sbjct: 103 EDFVKKNTPSDAEVTARYNALIKDAGGKEY-HLHHILVDNEQQAKDLIAKIKGGASFEDL 161

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355
           A++  K       G    +S         AD+   L +KG  +   +H  FG+ I  V +
Sbjct: 162 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHL-QKGQMSETPVHTQFGWHIIRVDD 220

Query: 356 IKPSFTVSFQEVKKDIANQMRITKAS 381
           ++       ++V+  I  Q++  K  
Sbjct: 221 VRSITPPPLEQVRPQIVQQIQQEKLQ 246



 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 41/119 (34%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G +F D+ K       +      +D ++ K +  +           
Sbjct: 142 EQQAKDLIAKI-KGGASFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P+     + + +V + +       ++    + Q + ++ L +    L+    + 
Sbjct: 201 QMSETPVHTQFGWHIIRVDDVRSITPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259



 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 49/152 (32%), Gaps = 15/152 (9%)

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASE-----KVKEDYKRLEEFLA---LGTSMDEI 404
           + +     T S  EV       ++     E      + ++ ++ ++ +A    G S +++
Sbjct: 102 IEDFVKKNTPSDAEVTARYNALIKDAGGKEYHLHHILVDNEQQAKDLIAKIKGGASFEDL 161

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           +++        P     G D+   +  A     +              +  V    G + 
Sbjct: 162 AKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFADAATHLQKGQMSETPVHTQFG-WH 214

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
            +++ +        LE+V   + +  +  K  
Sbjct: 215 IIRVDDVRSITPPPLEQVRPQIVQQIQQEKLQ 246


>gi|209543390|ref|YP_002275619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531067|gb|ACI51004.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 308

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 56/147 (38%), Gaps = 6/147 (4%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            +++  +QA Y ++              ++   + EA +  + LK G  F  LA +    
Sbjct: 135 TLTDAAVQAYYTQHYANKKPEAEIHARHILVATEAEAKDVIKQLKAGADFGALATKLSTD 194

Query: 307 -----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                 +   LG F K  +   + +D+ F++         +H  +G+ +  V + + +  
Sbjct: 195 KASAKQNGGDLGWFKKGDML-PAFSDAAFAMKPHTFSQTPVHTQYGWHVIEVLDTRTADV 253

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDY 388
                V+ +I  ++      + V++  
Sbjct: 254 PKLDAVRDEIRQKLIQQGVRDAVEKAV 280



 Score = 37.3 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 11/87 (12%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V SV  + +  +    +       + Q    ++             +L+ L+    +   
Sbjct: 50  VASVNGEDIHLADVRQAAANMPAQLRQLPPNMIFP----------MLLNQLIDQKAIQAA 99

Query: 103 IEDIGLE-ADHGRVWGEIARSPLFHGK 128
               GL+     +     A        
Sbjct: 100 ATHAGLDKQPDVQQQMHAAAMNALQNA 126


>gi|325288391|ref|YP_004264572.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963792|gb|ADY54571.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 311

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/362 (11%), Positives = 104/362 (28%), Gaps = 94/362 (25%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS--VGLDKKILDNLVS 95
           S    V  V  + +    F N        +  + G    +E  ++    +  ++L   + 
Sbjct: 25  SNVDYVAKVNDELIAKKDFDNKLNDIKTYVQSQ-GVDFTTEEGKAYLQNIQGQLLSMSIQ 83

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
            A + Q ++    + +  ++  ++ +               +   L ++G+ E++  + +
Sbjct: 84  DAIIRQEVKKNNWDTNIPQITEKVNQIS--QKNGG--DLATY---LKQQGLTEEDLKNTF 136

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
                                                 Y           A  S     Q
Sbjct: 137 A-----------------------------------FAYYT------GKDATVSEEETRQ 155

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +FE + D Y                                           E      +
Sbjct: 156 YFEDHFDQY---------------------------------------GGQMEQVKARHI 176

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSL 332
           +   + EA +  + ++ G  F  LA+E+    S      +  F++  + +     + F +
Sbjct: 177 LVGTEDEAKDIIRQIQAGADFAALAKEKSTDGSKDNGGEIDYFTRGKMVE-EFEKAAFDM 235

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                 T  +   +GY +  V + K +    +++VK+ +         ++K +  Y +L 
Sbjct: 236 KIGELTTTPVKTKYGYHVIQVLDHKQTVKPDYEKVKEKVQADALENAQNQKAESYYMKLA 295

Query: 393 EF 394
           + 
Sbjct: 296 QE 297


>gi|85705703|ref|ZP_01036800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp. 217]
 gi|85669693|gb|EAQ24557.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp. 217]
          Length = 304

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 70/181 (38%), Gaps = 6/181 (3%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E +R + +  DV E     +++ + LQA Y+                ++   ++EA +  
Sbjct: 117 ENERRAVLAADVAEGVVNADMTEERLQAAYDAQYAGQEDQTEYKAAHILVETEEEAQKLV 176

Query: 288 QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             L+ G  F  LA+E        S   LG F    +       +  +  + GD +  +  
Sbjct: 177 AELEGGANFAALAQEHSTGPSGPSGGDLGWFGDGVMVPEFF--AAVAALEVGDVSAPLQT 234

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            FG+ +  ++  +     +   V++D+AN +R   A      + +   E +   +S  + 
Sbjct: 235 QFGWHVIQLNETRVKERPTLDAVREDLANTLRRD-AFNAFMTEREAATEIVRSDSSAMDP 293

Query: 405 S 405
           +
Sbjct: 294 A 294


>gi|229195463|ref|ZP_04322231.1| Foldase protein prsA 2 [Bacillus cereus m1293]
 gi|228588003|gb|EEK46053.1| Foldase protein prsA 2 [Bacillus cereus m1293]
          Length = 285

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 30/206 (14%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240
           Y ++    +      S+  + +  +K K+ Y             +     +         
Sbjct: 57  YEMMAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLRNNGLKDEADFKNQIKFKLAM 116

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
            +  K  I+  +++  Y+        PEI+    ++  ++ EA E  + L  G  F +LA
Sbjct: 117 NEAIKKSITEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167

Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +++ + L        LG F+   +       + + L K G  +  +    GY I  +++ 
Sbjct: 168 KQESQDLLSKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVTSPNGYHIIKLTDK 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382
           K      + EVK  I   +   + S+
Sbjct: 226 KE--LKPYDEVKDSIRKNLEEERISD 249



 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+     P  E   +++      + +          Y  +++ +      +  +EV   
Sbjct: 188 SGR---MAPEFETAAYKL-----KVGQISNPVTSPNGYHIIKLTDKKE--LKPYDEVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  + ++
Sbjct: 238 IRKNLEEERISD 249


>gi|313623769|gb|EFR93906.1| foldase protein PrsA [Listeria innocua FSL J1-023]
          Length = 294

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 91/253 (35%), Gaps = 27/253 (10%)

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--------- 224
            +   L +A +  + N  V  +    + +      +   +   ++KY++ Y         
Sbjct: 35  VTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSFESTLS 93

Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                +    + + Y L      E  + +S  +L+  Y+  +          V  ++  +
Sbjct: 94  SNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDIT------VRHILVDD 147

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKG 336
           +  A E    LK G+KF  LA+E     +  + G     + P   D +   + ++L  K 
Sbjct: 148 EATAKEIQTKLKNGEKFADLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALKNKD 207

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDYKRLEE 393
           D + ++  ++GY +  +       T + ++       I +Q+     +  +K++ K    
Sbjct: 208 DISGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIKSQLTSENMTAALKKELKAANI 267

Query: 394 FLALGTSMDEISR 406
            +      D  + 
Sbjct: 268 DIKDSDLKDAFAD 280


>gi|163755251|ref|ZP_02162371.1| possible peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1]
 gi|161324671|gb|EDP96000.1| possible peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1]
          Length = 660

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 96/683 (14%), Positives = 209/683 (30%), Gaps = 121/683 (17%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
             ++L V F  +G             + ++  +    S F   +K+ L +I +K    + 
Sbjct: 7   LFLILLVSFTTFG------QSKKDKVLFTIEGEPTYVSEFSRVYKKNLDIIDEKDQKEI- 59

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
                     ++  D  V      +  +++ L+     V                     
Sbjct: 60  ----------EEYFDLFVEYKLKLKEAKNLKLDEKDSYVKEL----------------AG 93

Query: 137 FVSRLAREGIN--------EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
           +  +L+R  +          KE  D   K +  + ++        P + L    K     
Sbjct: 94  YRKQLSRNYMTDNNATEKLTKEAYDRLQKEVKASHILINVSLDAAPKDTLAAYNKIMDIR 153

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
              ++        V    DPS     +     K N       R+ Y         +K E+
Sbjct: 154 KSILEGADFGEMAVKHSDDPSAKGNQKV-AANKGNLGYFSAFRMVYPFESAAFNTQKGEV 212

Query: 249 S---NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD----------EAFQSLKKGKK 295
           S     +      K ++   +    TV  ++  ++KE +          + +  ++ G  
Sbjct: 213 SMPVRTQFGYHIVKVEDIRDNAGEITVAHILLLDKKEGENKEDPEQKIKDIYSQIQDGGD 272

Query: 296 FIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+   +  S       L  F +  +      D  FSL K  + +      FG+ I 
Sbjct: 273 FGALAKRFSEDRSSGVNKGILPKFGRGRLRSKIFEDVAFSLDKAKEISKPFKSEFGWHIV 332

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK-------EDYKRLEEFLALGTSMDEI 404
            + +  P    S++E K  +  +++  K +  +            ++EE         ++
Sbjct: 333 QLISKHP--MKSYEEEKPLLERKIKNDKRANVINTSILKKINQLYKIEEGKTARADFYKL 390

Query: 405 SR----------------------REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
           +                       +     +            + + +   P  +  + R
Sbjct: 391 ADASFFSKNWKKPTDKTFLDKTLFQINDTRVTYDEFATYLLKNRSRNMVKNPDAKGFINR 450

Query: 443 -----------VFGKDDPLSKDHTVALPDGSY----MWVQIKESI---PARDRK--LEEV 482
                       F + D  + +   A   G Y    +   + E+     A+     LE+ 
Sbjct: 451 NYKEFMDNKLLSFYESDLENVNEDFAAIYGEYRDGLLLFDLMENEIWNKAKTDTLGLEKF 510

Query: 483 LTDVKKDWKTVKTAEEV-----SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             D K+D+K  +  E V        + + V E  + GK+  +I K     +   +++N +
Sbjct: 511 FNDNKEDYKWKERVEAVIASCSKEASAKKVQELLEAGKSLDEIKKA----VNKDSKVNVI 566

Query: 538 DNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596
            +   F  G+  + + F     + K +  +    + + KV        ++  +    +  
Sbjct: 567 FSPGVFEKGHRNLPEDFKFTKGVSKIYN-DGKTDFTIVKVDKIIPESYKKLSEIKGKVIS 625

Query: 597 MMNKDLLDSVIAYLKSQYSVTVH 619
                L    +  LK  Y V ++
Sbjct: 626 DYQVYLEKEWVTSLKKNYEVKIN 648


>gi|217958629|ref|YP_002337177.1| peptidylprolyl isomerase [Bacillus cereus AH187]
 gi|229137839|ref|ZP_04266438.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST26]
 gi|217067290|gb|ACJ81540.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus AH187]
 gi|228645496|gb|EEL01729.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST26]
          Length = 287

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + F++ K  Y               E  +         EK  +  I++ EL+
Sbjct: 67  KVEDKEVDKKFDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA++  +         
Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +      ++ + L KK + +  +   FGY I  V++IK     SF++ K D
Sbjct: 178 DLGFFGPGKMVK-EFEEAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234

Query: 371 IANQMRITKASE 382
           I  ++   KA +
Sbjct: 235 IKKEIVQKKAQD 246


>gi|73541086|ref|YP_295606.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
 gi|72118499|gb|AAZ60762.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
          Length = 264

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 67/160 (41%), Gaps = 5/160 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K    S+DEL+ +Y+K K ++ + +   V  ++   + +A      +K G KF  +
Sbjct: 101 EDYVKTHGASDDELRKQYDKIKSQFGNGKEYHVRHILVEKEADAKAIIAKIKGGAKFEDM 160

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           A+   K     + G           + +  +  +  KKG  T   +   FG+ I  + + 
Sbjct: 161 AKASSKDPGSAANGGDLDWANSGSYVPEFSAAMTTLKKGQMTDTPVKTQFGWHIIELVDT 220

Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394
           + +   SF+EVK  +   M   +    E+ +   K L++ 
Sbjct: 221 RDAKIPSFEEVKPQLMQMMMGDQNWQREQFQAMMKSLKDK 260


>gi|257094858|ref|YP_003168499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047382|gb|ACV36570.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 269

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 5/166 (3%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           ++  YI   V +  KK  IS+++ +A YE+ K +  S E + V  ++   + +A     +
Sbjct: 104 RQAIYIRAFVQDYVKKNPISDEQAKAAYERMKSQMGSTEYK-VRHILVEKEDDAKTIIVN 162

Query: 290 LKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           LKKG KF +LA+   + G       LG  S          D++  LAK       +   F
Sbjct: 163 LKKGAKFDELAKQSKDPGSKEKGGDLGWSSTANYVKP-FGDAVAGLAKGKFTETPVKTDF 221

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY +  V + +P     F ++K  I  +++  +  + V E  K+ +
Sbjct: 222 GYHVILVEDSRPLTPPPFDQIKPQINQRLQQEQLQKYVAELQKKAK 267



 Score = 43.8 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 34/106 (32%)

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS 570
            K+G  F ++ K            +   +    +       V           P++    
Sbjct: 163 LKKGAKFDELAKQSKDPGSKEKGGDLGWSSTANYVKPFGDAVAGLAKGKFTETPVKTDFG 222

Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           Y V  V +S+       D+    + Q + ++ L   +A L+ +  +
Sbjct: 223 YHVILVEDSRPLTPPPFDQIKPQINQRLQQEQLQKYVAELQKKAKI 268



 Score = 40.4 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 11/123 (8%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           ++D K +   L  G   DE++++ K         D                   L    F
Sbjct: 153 EDDAKTIIVNLKKGAKFDELAKQSKDPGSKEKGGDLGWSSTANYVKPFGDAVAGLAKGKF 212

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE---EVSS 501
            +    +        D  Y  + +++S P      +++   + +  +  +  +   E+  
Sbjct: 213 TETPVKT--------DFGYHVILVEDSRPLTPPPFDQIKPQINQRLQQEQLQKYVAELQK 264

Query: 502 KAN 504
           KA 
Sbjct: 265 KAK 267


>gi|113867525|ref|YP_726014.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
 gi|113526301|emb|CAJ92646.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
          Length = 264

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 68/161 (42%), Gaps = 7/161 (4%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K    S+ EL+ +Y+K K ++ + +      ++   + +A      +K G KF  +
Sbjct: 101 EDYVKTHGASDAELRKQYDKIKSQFGNGKEYHARHILVEKEADAKAIIAKIKGGAKFEDM 160

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355
           A+   K     + G    ++         + ++  L KKG  T   +   FG+ I  + +
Sbjct: 161 AKASSKDPGSAANGGDLDWANSSSYVPEFSAAMTGL-KKGQLTDTPVKTQFGWHIIELVD 219

Query: 356 IKPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394
           ++ +   SF+EVK  +   +   +    E+ +   K L++ 
Sbjct: 220 VRDAKIPSFEEVKPQLTQMLMGDQNWQREQFQAMMKSLKDK 260



 Score = 38.0 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
           + +   +E  +KA   ++   K G  F D+ K       +      +D  N        S
Sbjct: 134 RHILVEKEADAKA---IIAKIKGGAKFEDMAKASSKDPGSAANGGDLDWANSSSYVPEFS 190

Query: 551 QVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM------NKDLL 603
              +G     +   P++    + + ++ + +   +   ++    LTQM+       ++  
Sbjct: 191 AAMTGLKKGQLTDTPVKTQFGWHIIELVDVRDAKIPSFEEVKPQLTQMLMGDQNWQREQF 250

Query: 604 DSVIAYLKSQYSVT 617
            +++  LK +  + 
Sbjct: 251 QAMMKSLKDKAKIQ 264


>gi|196048054|ref|ZP_03115232.1| foldase protein PrsA [Bacillus cereus 03BB108]
 gi|196021310|gb|EDX60039.1| foldase protein PrsA [Bacillus cereus 03BB108]
          Length = 299

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 90/226 (39%), Gaps = 31/226 (13%)

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKR--IS 233
            R++D + +  + +      SN  +    ++ K  +                E  R  I 
Sbjct: 58  ERTLDEL-ITLKVLEKKYKVSNGEIDDEIKRLKAEFGNTFTDFLAQNGVSNEEQLRDVIK 116

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
                       I++   +L+  Y++ K     PE+R V  ++  ++++A++    +  G
Sbjct: 117 LDKLKQKLALDHIKVKEKDLKDLYQQKK-----PELR-VSHILVADEQQANDIKGKIDAG 170

Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F  LA+E    ++       +G F    +      D+   L K G+ +  +H  FGY 
Sbjct: 171 EDFGSLAKEFSLDVATKEKGGDIGYFKDGDMLQP-FQDAARKL-KPGEVSQPVHTDFGYH 228

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYKRLEEF 394
           I  + + K     SF+++K  + +++   K    K+  + ++L + 
Sbjct: 229 IIKLIDEK--KLPSFEKMKPQLESELITKKIDQSKINAEIQKLLDK 272


>gi|53712369|ref|YP_098361.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
 gi|253563594|ref|ZP_04841051.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
 gi|52215234|dbj|BAD47827.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
 gi|251947370|gb|EES87652.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
 gi|301162075|emb|CBW21619.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 712

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 92/718 (12%), Positives = 209/718 (29%), Gaps = 118/718 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     S  V  V  + +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGETLSAQDYQNMVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   +I    G    ++  ++  +  ++  + V+   +++  + +G+      +   I  
Sbjct: 61  EYTEVIKFSSGMSSLNDE-QTNQVKDEVWRSYVNNKLIEKEAKKLGITVSKAEIQSIINE 119

Query: 120 -----ARSPLFHGK-DNKFSH---DVFVSRLAREGIN--EKEYIDHYT----------KM 158
                 +   F       F       F++  ++        +Y+++Y           K 
Sbjct: 120 GVNPLLQQTPFRNPQTGAFDKDMLKKFLADYSKMDKTKMPSQYVEYYEGMHKLWSFVEKT 179

Query: 159 LSRTDV-------------------VGMFVGGMRPSNLLL-------------------- 179
           L ++ +                      F   +  S++LL                    
Sbjct: 180 LIQSRLAEKYQALVTKALFSNPVEAQDAFDARVNQSDVLLAAVPYSSIVDSTITVKESEL 239

Query: 180 -------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK---DNYRAPEY 229
                   +  + Y E R++ YI +               +T +  +      +Y     
Sbjct: 240 KDLYNKKKEQFKQYVETRNIKYIDVQVTASAEDRAAIQQEVTDYTNQLATANGDYTTFIR 299

Query: 230 KRISYILFDVHEKEKKIEISNDELQA-----------EYE---------KNKEKYFSPEI 269
              S   +      KK   S+   +             Y          K   K  + + 
Sbjct: 300 STGSEYPYVDLYYTKKAFPSDVVARMDSASIGQVYGPYYNAGDNTINSFKVLSKVAAADS 359

Query: 270 RTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYI- 320
               Q+          +  AD  + ++K G  F  LA++ G++   + IS  ++    + 
Sbjct: 360 VQFRQIQVYTEDAAKTKALADSIYTAIKGGADFTALAKKYGQTGESNWISSANYENAQVD 419

Query: 321 -PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
             ++    +I +L    + + V  G  G +I  V++ K         V   I   +  +K
Sbjct: 420 GDNLKFISTINNLG-VNELSNVALGQ-GNIILQVTDKKAVKDKYKVAV---IKRAVEFSK 474

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
             E   + Y    +F+A   ++D+++   +     L   +       G  +  I   ++ 
Sbjct: 475 --ETYNKAYNEFSQFIAANPTVDKVAANAEESGYKLLERNDLYSSEHG--IGGIRGTKEA 530

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           L   F                   + V +   I    R L +V   ++ +    K AE++
Sbjct: 531 LKWAFAAKPGEVSGLYECGESDRMLVVGLVSVIEEGYRPLAQVQDQLRAEIIRDKKAEKI 590

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
            +           +   +  +   +  S+                    +    S     
Sbjct: 591 MADMKAANATTIAQ---YTSMANAVSDSVKHVTFAAPAYVAALRSSEPLVGAYASVSDIN 647

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               PI+      V +V            +      + M+  L    +  L  +  V 
Sbjct: 648 KLSAPIKGNGGVFVLQVYAKDKLNETFDAQSEEATLENMHARLASRFMNDLYLKGDVK 705


>gi|319654925|ref|ZP_08008999.1| hypothetical protein HMPREF1013_05621 [Bacillus sp. 2_A_57_CT2]
 gi|317393350|gb|EFV74114.1| hypothetical protein HMPREF1013_05621 [Bacillus sp. 2_A_57_CT2]
          Length = 288

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/372 (13%), Positives = 106/372 (28%), Gaps = 120/372 (32%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
               + L ++ + FL++              V  VG  K+    +++  + + G      
Sbjct: 10  IAGLVLLNLITLAFLLF------KGDGSGEAVAKVGGDKITRQEWMSEMETKYG------ 57

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
                          K  L  L+    +++  E  G++     V  E+      +G    
Sbjct: 58  ---------------KSTLSELIDQKVIEEAGEKYGVKVSEKAVDLELKMVKTMYG--GN 100

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F+ +          ++E ++       L   +++                          
Sbjct: 101 FTDE----------MSEDKWRRQIKNNLILEELL-------------------------- 124

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
                       A    S   +  ++E+    ++ P+                       
Sbjct: 125 -----------TADVSVSEEEMKSYYEQNSSQFQVPDTY--------------------- 152

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
                               + Q++   ++EA++  + L +G  F  LA E+       S
Sbjct: 153 -------------------HISQIIVKTKEEAEQTLKELDEGSSFSVLAMERSIDEFTAS 193

Query: 312 LGSFSKEYIPDVS-LADSIF---SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           LG  +     D   +   +F      K G +T  I    GY +  +         SF+EV
Sbjct: 194 LGGNAGYVSEDDEHIPAEVFEQVKTLKPGKWTKPIKTENGYAVVMLHEHLKGENYSFKEV 253

Query: 368 KKDIANQMRITK 379
           K  I  Q+ + +
Sbjct: 254 KSMIRRQIALEQ 265


>gi|254511296|ref|ZP_05123363.1| ppic-type ppiase domain protein [Rhodobacteraceae bacterium KLH11]
 gi|221535007|gb|EEE37995.1| ppic-type ppiase domain protein [Rhodobacteraceae bacterium KLH11]
          Length = 282

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 66/152 (43%), Gaps = 5/152 (3%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
               ++++ +QA Y+    ++   +      ++   +++A+     L +G  F +LA+E 
Sbjct: 111 AAAAVTDEAIQAAYDAQFAEFEGADEFNASHILVETEEDANALKTQLDEGADFAELAKEN 170

Query: 304 GKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
               S     +LG F    +      +++ SL +KG  +  +   FG+ +  +++ + + 
Sbjct: 171 STGPSGPNGGALGWFGTGQMV-PEFENAVLSL-EKGQVSDPVQTQFGWHLVTLNDKRKTQ 228

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                 V+ ++A  ++      ++ E  ++ +
Sbjct: 229 APELDAVRTELAQSIQQEAIQARIDELTQQAQ 260


>gi|228950070|ref|ZP_04112255.1| hypothetical protein bthur0007_61420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809597|gb|EEM56033.1| hypothetical protein bthur0007_61420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 299

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 95/245 (38%), Gaps = 32/245 (13%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----- 224
            G    + L ++      +    D I L    +      S+  +    ++ K  +     
Sbjct: 40  SGTISKDELYNRMVDKIGQRTLDDMITLTV--LQKKYKVSDGEIDDEIKRLKSEFGNSFN 97

Query: 225 --------RAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                      E  +  I           + ++I + +L+A YE+ K     PEIR V  
Sbjct: 98  DFLSQNGVNNEEQLKDVIKLDKLKQKLALEHLKIQDKDLKALYEQKK-----PEIR-VSH 151

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIF 330
           ++  ++  A +    +  G+ F  LA+E  + ++       +G F +  +   +  D+  
Sbjct: 152 ILVSDETLAKDIKSKIDSGEDFGSLAKEFSQDIATKEKGGDIGYFKEGDMV-QAFQDAAR 210

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYK 389
            L K G+ +  +   FGY +  + + K    +SF+++K  + +++   K    K+  + +
Sbjct: 211 KL-KVGEVSQPVKTDFGYHVIKLLDEK--KLLSFEQMKPQLESELISNKMDQNKINAEIQ 267

Query: 390 RLEEF 394
           +L + 
Sbjct: 268 KLLDK 272


>gi|229017643|ref|ZP_04174536.1| Foldase protein prsA 1 [Bacillus cereus AH1273]
 gi|229023860|ref|ZP_04180344.1| Foldase protein prsA 1 [Bacillus cereus AH1272]
 gi|228737447|gb|EEL87958.1| Foldase protein prsA 1 [Bacillus cereus AH1272]
 gi|228743649|gb|EEL93756.1| Foldase protein prsA 1 [Bacillus cereus AH1273]
          Length = 276

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 12/221 (5%)

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEISNDEL 253
           N+ +      S+    +  +  K+        A E   +        + + +I +     
Sbjct: 53  NKALLDKYKVSDEEAKKQVDAAKEQMGDKFEVALEQVGLKNEDELKEKMKPEIALEKAIK 112

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
               +K+ +    PE++ V  ++  ++K A E  + +  G+ F  LA++  +       G
Sbjct: 113 ATVTDKDVKDNHKPEMK-VSHILVKDEKTAKEVKEKINNGEDFTTLAKQYSEDTGSKEQG 171

Query: 314 SFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                + P        ++ + L   G  +  I  S+GY I  V++ K      F EVK  
Sbjct: 172 GEIAGFAPGQTVKEFEEAAYKL-DAGQVSEPIKTSYGYHIIKVTDKKE--LKPFDEVKDT 228

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
           I   +   +  +   +  +++   L     +    +  K  
Sbjct: 229 IRKDLEQQRLQDATGKWKQQVINDLLKEADIKVTDKEFKDT 269



 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    +             
Sbjct: 119 DVKDNHKPEMKVSHILVKDEKTAKEVKEKINNGEDFTTLAKQYSEDTGSKEQGGEIAGFA 178

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 179 PGQTVKEFEEAAYKLDAGQVSEPIKTSY--------GYHIIKVTDKKE--LKPFDEVKDT 228

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q++ +  KE
Sbjct: 229 IRKDLEQQRLQDATGKWKQQVINDLLKE 256


>gi|120602308|ref|YP_966708.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris DP4]
 gi|120562537|gb|ABM28281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris DP4]
          Length = 343

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 112/354 (31%), Gaps = 81/354 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +     V  + + +  F    +    ++   +  V +++      + + +LD+++S   +
Sbjct: 59  NRIAAVVNGEMITY--FDVQAQAAPEILRAGLDPVRDADAEPVRRITRNVLDSMISDILI 116

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E + +      V  E  +      + ++ + + F  +LA++G++     +   + +
Sbjct: 117 SQEAERLKITVQDSEVDNEYRKI----VQRSQLAPEQFERQLAQQGLSADLMRERIRRGI 172

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  ++G+                                  +      +   + +++E 
Sbjct: 173 LRHRLLGLM---------------------------------IARKVVVTRDEIAKYYEA 199

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +K  + +    R+  +                                        +FP 
Sbjct: 200 HKGQFVSGRKVRLGLV----------------------------------------IFPP 219

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGD 337
           + +AD     +K G   F  LA       +  + G        D+S+      S  K GD
Sbjct: 220 RDDADALAAQVKSGAMTFADLAARHSIGPNPQNGGVIGDLLWSDLSMEWRDTLSELKPGD 279

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            + V        +  +         +  +V ++I N +R  K  E+++E   +L
Sbjct: 280 VSRVFLVEGRKAVLQLVASNEGKGQALDDVAEEIENILREPKMQERLQEYIGQL 333


>gi|163939063|ref|YP_001643947.1| peptidylprolyl isomerase [Bacillus weihenstephanensis KBAB4]
 gi|229166104|ref|ZP_04293865.1| Foldase protein prsA 2 [Bacillus cereus AH621]
 gi|163861260|gb|ABY42319.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           weihenstephanensis KBAB4]
 gi|228617326|gb|EEK74390.1| Foldase protein prsA 2 [Bacillus cereus AH621]
          Length = 285

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 82/198 (41%), Gaps = 14/198 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248
           Y ++    +      S+  + +  EK KD Y        E  R+       ++ + K+ +
Sbjct: 57  YEMVAQDVITKKYKVSDDAVDKEVEKAKDQYGEQFKATLENNRLKDEEDFKNQIKFKLAL 116

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           +    Q+  EK+ + ++ PEI+    ++  N+ EA E  + L  G  F +LA+++ + L 
Sbjct: 117 NEAIKQSVTEKDVKDHYKPEIK-ASHILVSNENEAKEIKKKLDTGTSFEELAKQESQDLA 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              +   LG F    +       + + L K G  +  +    GY I  +++ K      +
Sbjct: 176 SKDNGGDLGYFGAGKMT-PEFEKAAYKL-KPGQISNPVKSPNGYHIIKLTDKKD--LQPY 231

Query: 365 QEVKKDIANQMRITKASE 382
            +VK  I   +   + ++
Sbjct: 232 DKVKDSIRKDLEEERLAD 249



 Score = 38.0 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  GTS +E++++E   S DL   D  G   
Sbjct: 128 DVKDHYKPEIKASHILVSNENEAKEIKKKLDTGTSFEELAKQE---SQDLASKDNGGDLG 184

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
                   P  E+  +++     P    + V  P+G Y  +++ +      +  ++V   
Sbjct: 185 YFGAGKMTPEFEKAAYKL----KPGQISNPVKSPNG-YHIIKLTDKKD--LQPYDKVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++KD +  + A+
Sbjct: 238 IRKDLEEERLAD 249


>gi|30249389|ref|NP_841459.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
 gi|30138752|emb|CAD85329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
          Length = 264

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  +   +S+ EL+ EYE  K +    E +    ++   ++EA +   +LKKG  F +L
Sbjct: 108 ADFMRNNPVSDSELRKEYESVKAQMGDKEYK-ARHILVETEQEAKDLVAALKKGSAFDKL 166

Query: 300 AEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A E+       S G    +S   +     AD++  L K    +  +   FG+ +  + ++
Sbjct: 167 AGERSIDTGSKSNGGELGWSSAAVYVKPFADALIRLKKGETTSQPVQSPFGWHVIRLDDV 226

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + +   SF+EVK+++  ++   K +  V+   K  +
Sbjct: 227 RTAVPPSFEEVKQNMQQRVLQRKFAAVVESLRKNAK 262



 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 47/143 (32%), Gaps = 3/143 (2%)

Query: 477 RKLEEVLTDV-KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
           ++ E V   +  K++K      E   +A  LV    K+G  F  +         + +   
Sbjct: 123 KEYESVKAQMGDKEYKARHILVETEQEAKDLVAAL-KKGSAFDKLAGERSIDTGSKSNGG 181

Query: 536 RMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
            +  +    +       +           P+++   + V ++ + +       ++    +
Sbjct: 182 ELGWSSAAVYVKPFADALIRLKKGETTSQPVQSPFGWHVIRLDDVRTAVPPSFEEVKQNM 241

Query: 595 TQMMNKDLLDSVIAYLKSQYSVT 617
            Q + +    +V+  L+    V 
Sbjct: 242 QQRVLQRKFAAVVESLRKNAKVE 264



 Score = 37.7 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 11/83 (13%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
            +     TV  V    +P S      K                 +  S  +   + +NL+
Sbjct: 22  LNAQSGGTVAKVNGVAIPQSRLDLVVKAATAQ-----------GQPDSAEVRNALRENLI 70

Query: 95  SGATLDQFIEDIGLEADHGRVWG 117
           +   L Q     GL+     V  
Sbjct: 71  TEEILAQEAIKKGLDRSPEVVTQ 93


>gi|324325280|gb|ADY20540.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 285

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 83/198 (41%), Gaps = 14/198 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249
           Y ++    +      S+  + +  +K K+ Y    +    +  L D  + + +I+     
Sbjct: 57  YEMMAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLAM 116

Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           N+ ++    EK+ + ++ PEI+    ++  ++ EA E  + L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L K G  +  +    GY I  +++ K      +
Sbjct: 176 SKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVTSPNGYHIIKLTDKKE--LKPY 231

Query: 365 QEVKKDIANQMRITKASE 382
            EVK  I   +   + S+
Sbjct: 232 DEVKDSIRKNLEEERISD 249



 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 59/148 (39%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+     P  E   +++      + +          Y  +++ +      +  +EV   
Sbjct: 188 SGR---MAPEFETAAYKL-----KVGQISNPVTSPNGYHIIKLTDKKE--LKPYDEVKDS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  + ++ +  K  +L+ +  K+
Sbjct: 238 IRKNLEEERISDPIFGK--KLLQDELKK 263


>gi|52144275|ref|YP_082553.1| peptidylprolyl isomerase [Bacillus cereus E33L]
 gi|51977744|gb|AAU19294.1| protein export protein [Bacillus cereus E33L]
          Length = 287

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 77/193 (39%), Gaps = 28/193 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFD-------VHEKEKKIEISNDELQ 254
              +  + + +++ K  Y        + + I               EK  +  I++ EL+
Sbjct: 67  KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEGTLKTGVRAQLAQEKAIEKTITDKELK 126

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA++  +         
Sbjct: 127 ENYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +      D+ + L KK + +  +   FGY I  V+ IK     SF++ K D
Sbjct: 178 DLGFFGPGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTEIKEPE-KSFEQSKVD 234

Query: 371 IANQMRITKASEK 383
           I  ++   KA + 
Sbjct: 235 IKKEIVQKKAQDA 247



 Score = 36.9 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 102/275 (37%), Gaps = 56/275 (20%)

Query: 247 EISNDELQAEYEKNKEKYFSP--EIRTVEQLVFPN----QKEADEAFQSLKK--GKKFIQ 298
           +I+ DE    YE+ K +          +E+++  N     KE D+ +  +KK  G +F  
Sbjct: 34  DITKDE---FYEQMKTQAGKQVLNNMVMEKVLIKNYKVEDKEVDKKYDEMKKQYGDQFDT 90

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           L ++QG     I  G+        ++   +I                             
Sbjct: 91  LLKQQG-----IKEGTLKTGVRAQLAQEKAI----------------------------- 116

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             T++ +E+K++   +++ +    K +   K+++E L  G S +E++++    +      
Sbjct: 117 EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G    GK V         L +    +   S+          Y  +++ E     ++ 
Sbjct: 177 GDLGFFGPGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTEIKEP-EKS 227

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
            E+   D+KK+    K  +      N+L+++  K+
Sbjct: 228 FEQSKVDIKKEIVQKKAQDA--EFMNELMMKEIKK 260


>gi|154247041|ref|YP_001417999.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter
           autotrophicus Py2]
 gi|154161126|gb|ABS68342.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter
           autotrophicus Py2]
          Length = 338

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 68/166 (40%), Gaps = 4/166 (2%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           Y R   ++  +  +E K  +S +     Y++  +   +        ++  ++ +A E  +
Sbjct: 146 YARTKALMETLMTQEAKKAVSEEAKHKTYDEFVKSAPAEAEVRARHILVDDEAKAKEIAK 205

Query: 289 SLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             K G+ F +LA++  K        LG F+K+ +     A++ F L K G  +  +   F
Sbjct: 206 KAKAGEDFAKLAKDYSKDSAEDGGDLGYFTKDQMV-PEFAEAAFKLDK-GQVSDPVKSQF 263

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           G+ +  V + +     ++ +V   +   +     ++ V +     +
Sbjct: 264 GWHVIKVEDKRQKPVPTYDQVSDQVEQYLVRKAQADLVTKLRTDAK 309


>gi|229154723|ref|ZP_04282838.1| Foldase protein prsA 1 [Bacillus cereus ATCC 4342]
 gi|228628671|gb|EEK85383.1| Foldase protein prsA 1 [Bacillus cereus ATCC 4342]
          Length = 287

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + F++ K  Y               E  +         EK  +  I++ EL+
Sbjct: 67  KVEDKDVDKKFDEMKKQYGDQFDTLLKQQGIKEETIKNGVRAQLAQEKAIEKTITDKELK 126

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA++  +         
Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +      ++ + L KK + +  +   FGY I  V++IK     SF++ K D
Sbjct: 178 DLGFFGPGKMVK-EFEEAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234

Query: 371 IANQMRITKASE 382
           I  ++   KA +
Sbjct: 235 IKKEIVQKKAQD 246


>gi|89052781|ref|YP_508232.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Jannaschia sp. CCS1]
 gi|88862330|gb|ABD53207.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Jannaschia sp. CCS1]
          Length = 301

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 63/150 (42%), Gaps = 5/150 (3%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG- 304
            E+  +ELQA Y++   +           ++   +++A     +L +G  F +LA E   
Sbjct: 133 AELGEEELQAAYDEAYGEVEPTVEYNAAHILVEGEEDAQNLLTALGEGADFAELAAENSI 192

Query: 305 --KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                +  +LG F++  +       ++  L + G+ +  +   FG+ +  ++  +     
Sbjct: 193 GPSGPNGGALGWFTEGMMV-PEFEAAVMEL-EPGEVSSPVQTQFGWHVVLLNETREQAAP 250

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +  +V+ ++   +R  +   +++E     E
Sbjct: 251 TLDDVRPELEETIRRGRVDARLEELMAEAE 280



 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 11/152 (7%)

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVK--EDYKRLEEFLALGTSMDEISRREKIVSID 414
           +     ++ E   ++   +    A   V+  ED + L   L  G    E++    I    
Sbjct: 137 EEELQAAYDEAYGEVEPTVEYNAAHILVEGEEDAQNLLTALGEGADFAELAAENSI-GPS 195

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
            P     G   +G  V   P  E  +  +    +P      V    G ++ + + E+   
Sbjct: 196 GPNGGALGWFTEGMMV---PEFEAAVMEL----EPGEVSSPVQTQFGWHVVL-LNETREQ 247

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
               L++V  ++++  +  +    +     + 
Sbjct: 248 AAPTLDDVRPELEETIRRGRVDARLEELMAEA 279


>gi|324325142|gb|ADY20402.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 288

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + F++ K  Y               E  +         EK  +  I++ EL+
Sbjct: 68  KVEDKDVDKKFDEMKKQYGDQFDTLLKQQGIKEETIKNGVRAQLAQEKAIEKTITDKELK 127

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA++  +         
Sbjct: 128 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 178

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +      ++ + L KK + +  +   FGY I  V++IK     SF++ K D
Sbjct: 179 DLGFFGPGKMVK-EFEEAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 235

Query: 371 IANQMRITKASE 382
           I  ++   KA +
Sbjct: 236 IKKEIVQKKAQD 247


>gi|213584574|ref|ZP_03366400.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 168

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 69/174 (39%), Gaps = 10/174 (5%)

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           + +       V++ E  P   + L EV   V    K  K  ++    A +L++E  K GK
Sbjct: 1   ITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGK 59

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVV 573
               + K  G S      ++R   +         +   S P +    + + N +  + V+
Sbjct: 60  GAEAM-KAAGLSFGEPKTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVL 114

Query: 574 FKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
                 K G  P  +K   +  +TQ   + + +++++ L+ +  + + D L Q+
Sbjct: 115 LAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 168



 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           +  VS  KP       EVK+ +   ++  KA ++ K D ++L   L  G    E  +   
Sbjct: 10  VVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVELKAGKG-AEAMKAAG 68

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAI 433
           +   +   +    +D   +   A+
Sbjct: 69  LSFGEPKTLSRTSQDPVSQAAFAL 92


>gi|53804280|ref|YP_114087.1| peptidyl-prolyl cis-trans isomerase family protein [Methylococcus
           capsulatus str. Bath]
 gi|53758041|gb|AAU92332.1| peptidyl-prolyl cis-trans isomerase family protein [Methylococcus
           capsulatus str. Bath]
          Length = 325

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 10/233 (4%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP--SNAVLTQWFEKYKDNY 224
             V G   +   +   K    + RS +             +    +AV  Q  +  +   
Sbjct: 47  AVVNGTAITKAEVGAIKSELAQRRSGEVSEEKIVDELVKRELLRQDAVAKQLTKNPEYQA 106

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
           R    +R+        +  K + IS++ELQ EY+         E R    ++   +  A 
Sbjct: 107 RIDNAERVILSQIAAEDFMKNLTISDEELQKEYDSRIGAMQRAEYR-ARHILVDKEDVAK 165

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           +    L KG KF  LA++  K          LG FS + +     ++++  L K G+ T 
Sbjct: 166 DIIAKLGKGAKFEDLAKKFSKDPGSNNEGGELGWFSPQQMVQP-FSEAVEKL-KNGEITQ 223

Query: 341 -VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             +   FG+ +      + S   +F  VK+ I + ++  K  + + +   + +
Sbjct: 224 VPVQTQFGWHVIQREESRESAPPAFDAVKEQIKSMLQTQKLHQYIDDLMAKAK 276



 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 10/136 (7%)

Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
           + +++      +    A  ++ +  K G  F D+ K            N    E  +F  
Sbjct: 148 RAEYRARHILVDKEDVAKDIIAKLGK-GAKFEDLAK----KFSKDPGSNNEGGELGWFSP 202

Query: 547 DGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601
             + Q FS  V       +   P++    + V +   S+       D     +  M+   
Sbjct: 203 QQMVQPFSEAVEKLKNGEITQVPVQTQFGWHVIQREESRESAPPAFDAVKEQIKSMLQTQ 262

Query: 602 LLDSVIAYLKSQYSVT 617
            L   I  L ++  V 
Sbjct: 263 KLHQYIDDLMAKAKVE 278


>gi|296135908|ref|YP_003643150.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
 gi|295796030|gb|ADG30820.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
          Length = 262

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
           +   +K  I+  +++AEY+K  + + S E +  + ++ P++KEA +    LKKG KF +L
Sbjct: 105 NAYLQKHPITEAQIKAEYDKFVKSFGSTEYK-AQHILVPSEKEAQDIIAQLKKGAKFSEL 163

Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355
           A++  K     + G       P+      A ++ +L K G +T   +   FG+ +  +  
Sbjct: 164 AKKYSKDTGSAANGGDLGWSTPNNYVPPFAKALEAL-KPGQYTQTPVQSQFGWHVIKLDA 222

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +P+   +  ++K  I  +++  + ++   E   + +
Sbjct: 223 TRPAKAPTLDQLKPQIQAELQRQEVTKYQDELRAKAK 259



 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 16/116 (13%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +  + +V  + +P S   +          Q          A +  L + + + L+S   +
Sbjct: 23  AQNIATVNGKPIPQSLADSVANSMAKQQGQ----------AVTPQLKEMVKNELISREVM 72

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
            Q  + +GL+     V  EI        + N     +F + L +  I E +    Y
Sbjct: 73  VQEADKLGLDK-ETAVQDEIRI-----ARQNILIRALFNAYLQKHPITEAQIKAEY 122



 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/137 (9%), Positives = 45/137 (32%), Gaps = 2/137 (1%)

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NE 540
           V +    ++K          +A  ++ +  K+G  F ++ K       +      +  + 
Sbjct: 126 VKSFGSTEYKAQHILVPSEKEAQDIIAQL-KKGAKFSELAKKYSKDTGSAANGGDLGWST 184

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
              +       + +         P+++   + V K+  ++       D+    +   + +
Sbjct: 185 PNNYVPPFAKALEALKPGQYTQTPVQSQFGWHVIKLDATRPAKAPTLDQLKPQIQAELQR 244

Query: 601 DLLDSVIAYLKSQYSVT 617
             +      L+++  +T
Sbjct: 245 QEVTKYQDELRAKAKIT 261


>gi|122070617|sp|Q5P7I9|SURA_AZOSE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 439

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 121/402 (30%), Gaps = 63/402 (15%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
              V  + +         +Q +  ++++ G            L++++L+ LV      Q 
Sbjct: 39  AAVVNNEVITARELRERVEQAIHQLNRQ-GTPQPPADV----LERQLLERLVLERAQLQL 93

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
             +  L+ D   +   IAR      + N+ +     + L ++G++   + D+    +  T
Sbjct: 94  ARETSLQVDEATLERAIARI----AESNRLTIAQLQAALEKDGVSWSRFRDNIRTEILLT 149

Query: 163 DVVG------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--------- 207
            +        + V      N L + A     E   + +I++                   
Sbjct: 150 RLREREVDNRIVVTDAEVDNFLANNADALSGEEFELAHILIRVPEAATQQQMAGLVARAE 209

Query: 208 ---------PSNAVLTQWFEKYKDNY-----------RAPEYKRISYILFDVHEKEKKIE 247
                       A +   +    D             R P     +            + 
Sbjct: 210 TAKQRLNSGDDFARVAASYSDAPDAMNGGALGWRSRDRLPPLFAEAVRELSPGSVSPVLR 269

Query: 248 ISN-DELQAEYEKNKEKYFSP---EIRTVEQLVFPN-----QKEADE----AFQSLKKGK 294
            S    +    ++       P   E      ++          EA+       + +  G 
Sbjct: 270 SSAGLHIVKLLDRRGGAAAGPQQLEQTRARHILIRTSEILNDSEAESRLLGLRERVVNGA 329

Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F +LA+     LS      LG  S           ++ +L K G+ +  +   FG+ + 
Sbjct: 330 SFAELAKAHSADLSSAKGGDLGWLSPGDTV-PEFERTMNAL-KPGEVSAPVRSPFGWHLI 387

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            V   +    VS +  +    N +R  KA E  ++  ++L +
Sbjct: 388 QVEARR-LQDVSDERKRNAARNALRERKADEAFEDWLRQLRD 428



 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 93/292 (31%), Gaps = 42/292 (14%)

Query: 141 LAREGINEKEYIDHYTKMLS------RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           L R+G   +   D   + L       R  +       ++     L++A     E+  +  
Sbjct: 63  LNRQG-TPQPPADVLERQLLERLVLERAQLQLARETSLQVDEATLERAIARIAESNRLTI 121

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
             L           S              +R      I        E + +I +++ E+ 
Sbjct: 122 AQLQAALEKDGVSWS-------------RFRDNIRTEILLTRLREREVDNRIVVTDAEVD 168

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAEE 302
                N +     E   +  ++    + A            + A Q L  G  F ++A  
Sbjct: 169 NFLANNADALSGEEF-ELAHILIRVPEAATQQQMAGLVARAETAKQRLNSGDDFARVAAS 227

Query: 303 QGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-- 357
              +       +LG  S++ +P    A+++  L+  G  +PV+  S G  I  + + +  
Sbjct: 228 YSDAPDAMNGGALGWRSRDRLP-PLFAEAVRELS-PGSVSPVLRSSAGLHIVKLLDRRGG 285

Query: 358 -PSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
             +     ++ +   I  +        + +     L E +  G S  E+++ 
Sbjct: 286 AAAGPQQLEQTRARHILIRTSEILNDSEAESRLLGLRERVVNGASFAELAKA 337


>gi|254504552|ref|ZP_05116703.1| PPIC-type PPIASE domain protein [Labrenzia alexandrii DFL-11]
 gi|222440623|gb|EEE47302.1| PPIC-type PPIASE domain protein [Labrenzia alexandrii DFL-11]
          Length = 282

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 76/197 (38%), Gaps = 9/197 (4%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           ++  D  +  E+  +  +      ++    I++ +++  Y+K   ++  PE      ++ 
Sbjct: 87  DQDPDFKKQLEFLELRALRNAYLGQKINASITDADVKTAYDKEFAEFEGPEEINARHILV 146

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAK 334
            ++  A+     L  G  F +LA+E+    S      LG F+K  +      ++ F+L  
Sbjct: 147 EDKAAAEALIAELDGGADFAELAKEKSTGPSGPNGGDLGYFAKGQMV-PPFEEAAFALEP 205

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR---- 390
                  +   FG+ I  V + +     +   V+ ++  Q+   +   ++ E        
Sbjct: 206 GSFTKEPVETQFGWHIIKVEDKRRQEKPALDTVEANLRQQLARERYEARMVELKDEYAVE 265

Query: 391 -LEEFLALGTSMDEISR 406
            L+E LA   +    + 
Sbjct: 266 ILDEQLANADAEKPAAE 282



 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 38/114 (33%)

Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572
            G +F ++ K         N  +                 F+         P+E    + 
Sbjct: 161 GGADFAELAKEKSTGPSGPNGGDLGYFAKGQMVPPFEEAAFALEPGSFTKEPVETQFGWH 220

Query: 573 VFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
           + KV + +       D   + L Q + ++  ++ +  LK +Y+V + D  +   
Sbjct: 221 IIKVEDKRRQEKPALDTVEANLRQQLARERYEARMVELKDEYAVEILDEQLANA 274


>gi|116873652|ref|YP_850433.1| prsA protein, export protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742530|emb|CAK21654.1| prsA protein, export protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 291

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 83/207 (40%), Gaps = 26/207 (12%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247
           +      S+  + + F++YK  Y                    ++ Y L      E   +
Sbjct: 62  LGDKYKVSDEDVDKKFKEYKAQYGDQFAAVLAQSGLTEKTFKSQLKYNLLVQKATEANTD 121

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  Y+      + P+I TV  ++  ++K+A E  Q LK G KF  LA+E     
Sbjct: 122 TSDKALKEYYKT-----WQPDI-TVSHILVADEKKAKEVEQKLKDGAKFSDLAKEYSTDT 175

Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +    G     + P   D +   + ++L  KGD +  +   +GY I  +    P+   +F
Sbjct: 176 ATKENGGQLAAFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMDE--PATKTTF 233

Query: 365 QEVKKDIANQ-MRITKASEKVKEDYKR 390
            + KK +    +     +E +++  K+
Sbjct: 234 DKDKKAVKASYLTSQLTNENMQKTLKK 260


>gi|229068819|ref|ZP_04202115.1| Foldase protein prsA 2 [Bacillus cereus F65185]
 gi|229078459|ref|ZP_04211020.1| Foldase protein prsA 2 [Bacillus cereus Rock4-2]
 gi|229189353|ref|ZP_04316373.1| Foldase protein prsA 2 [Bacillus cereus ATCC 10876]
 gi|228594147|gb|EEK51946.1| Foldase protein prsA 2 [Bacillus cereus ATCC 10876]
 gi|228704881|gb|EEL57306.1| Foldase protein prsA 2 [Bacillus cereus Rock4-2]
 gi|228714327|gb|EEL66206.1| Foldase protein prsA 2 [Bacillus cereus F65185]
          Length = 285

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 81/203 (39%), Gaps = 14/203 (6%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248
           Y ++    +      S+  + +  EK K  Y     +  E   +       ++ + K+ +
Sbjct: 57  YEMMAQDVITKKYKVSDEEVNKEVEKVKKQYGDQFKKVLENNGLKDEEDFKNQIKFKLAM 116

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           +    ++  EK+ + ++ PEI+    ++  ++ EA E    L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L   G  +  +  S GY +  +++ K      +
Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231

Query: 365 QEVKKDIANQMRITKASEKVKED 387
            EVK  I   +   + ++ V   
Sbjct: 232 DEVKNSIRKNLEEERTADPVFSK 254



 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  +TA+ V SK  +L+ E  K+
Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263


>gi|206976548|ref|ZP_03237454.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus H3081.97]
 gi|206745231|gb|EDZ56632.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus H3081.97]
          Length = 288

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + F++ K  Y               E  +         EK  +  I++ EL+
Sbjct: 68  KVEDKDVDKKFDEMKKQYGDQFDTLLKQQGIKEETIKNGVRAQLAQEKAIEKTITDKELK 127

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA++  +         
Sbjct: 128 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 178

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +      ++ + L KK + +  +   FGY I  V++IK     SF++ K D
Sbjct: 179 DLGFFGPGKMVK-EFEEAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 235

Query: 371 IANQMRITKASE 382
           I  ++   K+ +
Sbjct: 236 IKKEIVQKKSQD 247


>gi|260683172|ref|YP_003214457.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196]
 gi|260686770|ref|YP_003217903.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291]
 gi|260209335|emb|CBA62746.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196]
 gi|260212786|emb|CBE03939.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291]
          Length = 310

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/370 (13%), Positives = 119/370 (32%), Gaps = 78/370 (21%)

Query: 33  ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVG---LDK 87
           +L  V  + ++  V   ++    +  +        +   G  ++         G   L+ 
Sbjct: 6   SLMMVGCNKSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKGRNKLEN 65

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGI 146
            I+  +V    L Q  +D GL      V         +   ++K + +  +  ++ + G+
Sbjct: 66  VIISFMVDNELLYQEAKDKGLTPSKSEV------DSKYQELEDKMNLNTSYKEKMDKAGV 119

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
           +++      ++ L+                                     N +      
Sbjct: 120 DKEYLKQEISRDLAIDK----------------------------------NKKAFEDRI 145

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           + S+  +  ++  +K ++   E      ++  + + +K++     E   +   N      
Sbjct: 146 NISDNDMEAYYTSHKKDFNVEEVSASQILISTLDKNKKEVSKDKKEALKKKADN------ 199

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPD 322
                                  +K G+ F  LA++         +   LG F+K+   +
Sbjct: 200 -------------------ILTKIKNGESFESLAKKYSDDKATGKNGGQLGYFTKDD-KN 239

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +F L KK + + V   S+GY I  V++ +     SF E +  I   +   K  E
Sbjct: 240 AEFTKEVFKL-KKNEVSNVFETSYGYHIVKVTDKRE-RQKSFNECQSLIRESILNEKYIE 297

Query: 383 KVKEDYKRLE 392
            +K+  +  +
Sbjct: 298 HIKKLNEDAK 307


>gi|289627686|ref|ZP_06460640.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649005|ref|ZP_06480348.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868493|gb|EGH03202.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 440

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 31  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++  +  +   + +
Sbjct: 86  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141

Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V                 + L  DQ K    E   +  I++      +      A 
Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + + +  
Sbjct: 202 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVDDVT 261

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            ++ A++ +  ++
Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 321

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F +LA+    + G +L+   L       +        + +   +G+ +     ++G
Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 379

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + ++  A N +R  K  E+++   +++ +   +   +   ++
Sbjct: 380 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437

Query: 407 REK 409
             +
Sbjct: 438 AAQ 440


>gi|154252183|ref|YP_001413007.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156133|gb|ABS63350.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum
           lavamentivorans DS-1]
          Length = 287

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 73/164 (44%), Gaps = 5/164 (3%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           + +++++  +A YEKN     + +      ++  ++ +A E    ++ GK F + A+E  
Sbjct: 116 QDKVTDEAAKAYYEKNIAGAPAEQEAHARHILVQDKAKAAEIAAEIEGGKGFEEAAKEYS 175

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +         LG F ++ +      +++FS+ K G+ +  +   FG+ +  +  ++    
Sbjct: 176 QDPGSADGGDLGWFKRDEMV-PEFGEAVFSM-KPGEVSAPVQTQFGWHLIQLVELRDVPK 233

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
            +++E  ++I  Q+   +  + +++     +  +    S    S
Sbjct: 234 PTYEEAHEEIIRQLARQEGQKLMEKLRTDAKIEIIGAESAAAPS 277


>gi|56694986|ref|YP_165332.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Ruegeria pomeroyi DSS-3]
 gi|56676723|gb|AAV93389.1| PPIC-type PPIASE domain protein [Ruegeria pomeroyi DSS-3]
          Length = 276

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 61/150 (40%), Gaps = 5/150 (3%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           +  +   +QA Y+      F  E      ++ P++ EA    + L  G  F   A+E+  
Sbjct: 107 VATTETAIQAAYDAQYADGFGGEEYNASHILVPSEDEAKAVKELLDNGADFAATAKEKST 166

Query: 306 SLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
             S     +LG F    +       ++ +L   G  +  +   FG+ +  +++ + S   
Sbjct: 167 GPSGPNGGALGWFGAGAMV-PEFEQAVVAL-NAGQVSDPVQTQFGWHVIILNDKRKSEAP 224

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +  EV+ ++A +++      ++ E  K  E
Sbjct: 225 ALDEVRDELAGRIQQDAIEARLAELTKDSE 254


>gi|206889870|ref|YP_002249039.1| foldase protein PrsA 1, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741808|gb|ACI20865.1| foldase protein PrsA 1, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 292

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 225 RAPEYKRISYILFDVHEKEKK-IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           R  E+K+I+ I   + ++ K   +++  + +  YEKNK+ +  P    + Q+V  N+ EA
Sbjct: 91  RMEEFKKITLINMLLEQEIKTLQQVTEQDAKEYYEKNKDMFIKPVEVRLSQIVVKNEDEA 150

Query: 284 DEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
            + ++ + KG++F ++A+E  +      S   +G F K  + +  + +  FSL K G  +
Sbjct: 151 KKVYERIDKGEEFSKIAKELSRDEKTKASGGDIGFFKKGQL-NPQIENVAFSLRK-GQVS 208

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
             +       I  ++++K    + F+++K  +  Q++  K  +        L++ 
Sbjct: 209 MPLTFKGELYIFKITDVK-GNPIDFEQIKGQLIEQLKAKKQQDWFNTYIDDLKKK 262



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 504 NQLVLEYSKEGKNFRDIGKNLGA-SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
            + V E   +G+ F  I K L        +  +    +         +  FS     V  
Sbjct: 150 AKKVYERIDKGEEFSKIAKELSRDEKTKASGGDIGFFKKGQLNPQIENVAFSLRKGQV-S 208

Query: 563 FPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
            P+       +FK+T+ K  P    Q K + I  L     +D  ++ I  LK ++ V ++
Sbjct: 209 MPLTFKGELYIFKITDVKGNPIDFEQIKGQLIEQLKAKKQQDWFNTYIDDLKKKHKVEIN 268

Query: 620 DNLIQRYLDG 629
           +  +Q  L+ 
Sbjct: 269 EKALQEILNQ 278


>gi|229095750|ref|ZP_04226729.1| Foldase protein prsA 2 [Bacillus cereus Rock3-29]
 gi|229101848|ref|ZP_04232562.1| Foldase protein prsA 2 [Bacillus cereus Rock3-28]
 gi|229114700|ref|ZP_04244114.1| Foldase protein prsA 2 [Bacillus cereus Rock1-3]
 gi|228668765|gb|EEL24193.1| Foldase protein prsA 2 [Bacillus cereus Rock1-3]
 gi|228681431|gb|EEL35594.1| Foldase protein prsA 2 [Bacillus cereus Rock3-28]
 gi|228687583|gb|EEL41482.1| Foldase protein prsA 2 [Bacillus cereus Rock3-29]
          Length = 285

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 81/198 (40%), Gaps = 14/198 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-----EYKRISYILFDVHEKEKKIEI 248
           Y ++    +      S+  +    +K K+ +        E  R+       ++ + K+ +
Sbjct: 57  YEMMAYDVITKKYKVSDDDVDNEVQKVKNQFGDQFKGFLENNRLKDEADFKNQMKFKLAL 116

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
                ++  EK+ + ++ PEI+    ++  ++  A E  + L  G  F +LA+++ + L 
Sbjct: 117 HEAVKKSVTEKDVKDHYKPEIK-ASHILVSDENAAKEIKKKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L K G+ +  +  + GY I  +++ K      +
Sbjct: 176 SKEKGGDLGYFNSGTMA-PEFETAAYKL-KVGEISNPVKSTNGYHIIKLTDKKD--LKPY 231

Query: 365 QEVKKDIANQMRITKASE 382
            EVK  I   +   + ++
Sbjct: 232 DEVKDSIRKNLEEERIAD 249



 Score = 38.8 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 45/132 (34%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      +   K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENAAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G            L      +   S           Y  +++ +      +  +EV   
Sbjct: 188 SGTMAPEFETAAYKLKVGEISNPVKST--------NGYHIIKLTDKKD--LKPYDEVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  + A+
Sbjct: 238 IRKNLEEERIAD 249


>gi|315303180|ref|ZP_07873840.1| foldase protein PrsA [Listeria ivanovii FSL F6-596]
 gi|313628450|gb|EFR96923.1| foldase protein PrsA [Listeria ivanovii FSL F6-596]
          Length = 291

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 87/232 (37%), Gaps = 27/232 (11%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--------------RA 226
           +A +  + N  V  +      +      +   +   ++KY++ Y              + 
Sbjct: 42  EAMKTTYGNEVVQQLTFK-XXLEDKYTVTKKEVNAEYKKYEEQYGDSFESTLASSNLTKT 100

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
              + I Y L      E  +++S  +L+  Y+      + P+I TV  ++  ++  A E 
Sbjct: 101 SFKENIEYNLLVQKATEANMDVSESKLKKYYKT-----WQPDI-TVRHILVDDEDTAKEI 154

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIH 343
              LK G+KF  LA+E     +  + G     +     D +   + ++L    D + ++ 
Sbjct: 155 QTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGTGEMDEAFEKAAYALKNPDDISGIVK 214

Query: 344 GSFGYVIAHVSNIKPSFT--VSFQEVKKD-IANQMRITKASEKVKEDYKRLE 392
            S+GY +  +       T       VK   I +Q+     +  +K++ K   
Sbjct: 215 SSYGYHLIQLVKKTDKTTYAKDKAAVKASYIESQLTSENMTAALKKELKAAN 266


>gi|229056898|ref|ZP_04196294.1| Foldase protein prsA 2 [Bacillus cereus AH603]
 gi|228720426|gb|EEL71999.1| Foldase protein prsA 2 [Bacillus cereus AH603]
          Length = 285

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 82/198 (41%), Gaps = 14/198 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248
           Y ++    +      S+  + +  EK KD Y        E  R+       ++ + K+ +
Sbjct: 57  YEMVAQDVITKKYKVSDDAVDKEVEKAKDQYGEQFKATLENNRLKDEEDFKNQIKFKLAL 116

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           +    Q+  EK+ + ++ PEI+    ++  N+ EA E  + L  G  F +LA+++ + L 
Sbjct: 117 NEAIKQSVTEKDVKDHYKPEIK-ASHILVSNENEAKEIKKKLDTGTSFEELAKQESQDLA 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              +   LG F    +       + + L K G  +  +    GY I  +++ K      +
Sbjct: 176 SKDNGGDLGYFGAGKMT-PEFEKAAYKL-KPGQISNPVKSPNGYHIIKLTDKKD--LQPY 231

Query: 365 QEVKKDIANQMRITKASE 382
            +VK  I   +   + ++
Sbjct: 232 DKVKDSIRKDLEEERLAD 249



 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  GTS +E++++E   S DL   D  G   
Sbjct: 128 DVKDHYKPEIKASHILVSNENEAKEIKKKLDTGTSFEELAKQE---SQDLASKDNGGDLG 184

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
                   P  E+  +++     P    + V  P+G Y  +++ +      +  ++V   
Sbjct: 185 YFGAGKMTPEFEKAAYKL----KPGQISNPVKSPNG-YHIIKLTDKKD--LQPYDKVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++KD +  + A+
Sbjct: 238 IRKDLEEERLAD 249


>gi|315927333|gb|EFV06677.1| PPIC-type PPIASE domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 263

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293
            +    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK        
Sbjct: 94  EKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELD 153

Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
            KF +LA+E+            LG F +  +      D+ F+L      T  +  +FGY 
Sbjct: 154 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 212

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +    N +    + F EVK+ I N ++  +  + + +  + L
Sbjct: 213 VILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDL 254


>gi|229120788|ref|ZP_04250031.1| Foldase protein prsA 2 [Bacillus cereus 95/8201]
 gi|228662793|gb|EEL18390.1| Foldase protein prsA 2 [Bacillus cereus 95/8201]
          Length = 285

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 74/206 (35%), Gaps = 30/206 (14%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240
           Y ++    +      S+  + +  +K K  Y             +     +         
Sbjct: 57  YEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLKDEADFKNQIKFKLSM 116

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
            K  K  ++  +++  Y+        PEI+    ++  ++ EA E  + L  G  F +LA
Sbjct: 117 NKAIKQSVTEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167

Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +++ + L        LG F+   +       + + L K G  +  +    GY I  +++ 
Sbjct: 168 KQESQDLLSKEKGGDLGYFNSGRMA-PEFETAAYKL-KIGQISNPVKSPNGYHIIKLTDK 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382
           K      + EVK  I   +   + ++
Sbjct: 226 KE--LKPYDEVKDSIRKNLEEERITD 249



 Score = 37.3 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+     P  E   +++      + +          Y  +++ +      +  +EV   
Sbjct: 188 SGR---MAPEFETAAYKL-----KIGQISNPVKSPNGYHIIKLTDKKE--LKPYDEVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  +  +
Sbjct: 238 IRKNLEEERITD 249


>gi|187776514|ref|ZP_02992987.1| hypothetical protein CLOSPO_00005 [Clostridium sporogenes ATCC
           15579]
 gi|187775173|gb|EDU38975.1| hypothetical protein CLOSPO_00005 [Clostridium sporogenes ATCC
           15579]
          Length = 247

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 5/138 (3%)

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFS 316
           NKE++ + E+ T   ++  ++ EA+  +  +K G  F + AE+  K  S     SLG+F+
Sbjct: 106 NKEEFRTQELITARHILVDSEDEANSIYGKIKNGLDFSEAAEKYSKCPSKAQGGSLGTFT 165

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           K  +       ++F  A+    T  +   FGY +  V NI+ S    F EVK  I N++ 
Sbjct: 166 KGQMV-PEFEKAVFE-AEVDKVTEAVKTQFGYHLIIVDNIRESMIKPFDEVKAMINNKLL 223

Query: 377 ITKASEKVKEDYKRLEEF 394
             K +++  E  + L + 
Sbjct: 224 QEKQNQQYNEFTQNLRDK 241


>gi|91205713|ref|YP_538068.1| protein export protein prsA precursor [Rickettsia bellii RML369-C]
 gi|157826827|ref|YP_001495891.1| protein export protein prsA precursor [Rickettsia bellii OSU
           85-389]
 gi|122425481|sp|Q1RI35|PLP_RICBR RecName: Full=Parvulin-like PPIase; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase plp; AltName: Full=Rotamase plp;
           Flags: Precursor
 gi|91069257|gb|ABE04979.1| Protein export protein prsA precursor [Rickettsia bellii RML369-C]
 gi|157802131|gb|ABV78854.1| Protein export protein prsA precursor [Rickettsia bellii OSU
           85-389]
          Length = 284

 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 7/154 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  +++     EY K        E   V  ++  ++KEA++    L KG  F +LA E  
Sbjct: 117 KSNLTDKMFDDEYNKYVTSLKGKEQIKVAHILVKSEKEANDLKNKLNKGADFAKLAGESS 176

Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              +  + G      + +          +  F+L K  + +  +   +G+ I  V   KP
Sbjct: 177 LDKASATNGGVIGYILLNQPGQLVPEFENKAFAL-KVNEVSTPVKTDYGWHIIKVLEKKP 235

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               + +E K  I N +      + + +   + +
Sbjct: 236 VPIPTKEEAKMTIDNVLAAEILKKYISDLEAKAD 269


>gi|297520133|ref|ZP_06938519.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           OP50]
          Length = 189

 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 74/189 (39%), Gaps = 11/189 (5%)

Query: 442 RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            + G++     +  +   DG   +V +I E  P   + L +V   VK   +     ++  
Sbjct: 7   GLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNNAEQQAK 66

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
             A +L+++  K GK    + +  G        ++R   +         +     P +  
Sbjct: 67  VDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRSGRD----PISQAAFALPLPAKDK 120

Query: 561 KCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
             + +   +  + V+  +   K G  P  +K   +  +TQ   + + +++++ L+ +  +
Sbjct: 121 PSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKI 180

Query: 617 TVHDNLIQR 625
            + D L Q+
Sbjct: 181 KIGDALEQQ 189


>gi|153008357|ref|YP_001369572.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
           anthropi ATCC 49188]
 gi|151560245|gb|ABS13743.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
           anthropi ATCC 49188]
          Length = 326

 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 87/245 (35%), Gaps = 14/245 (5%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE-KYKDNYRAPEYKRISYILFDV 239
           Q  R   E R +  +           +     L Q  E K +  +         Y    V
Sbjct: 82  QFSRLPAEQRRLAALAALIDIKAMAGEAEKEKLDQSQEFKNRMEFLRERALHNEYFKDAV 141

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +     +IS+D+++A Y+K               ++   ++EA+   + L+ G KF  L
Sbjct: 142 VD-----KISDDDVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDL 196

Query: 300 AEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A+E    G + +   LG F++  +       + F+L         +   FG+ +  + + 
Sbjct: 197 AKESSTDGTAANGGDLGYFAEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGFHVIQLEDR 255

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYK----RLEEFLALGTSMDEISRREKIVS 412
           +     +F +VK  I + +   +  E VK+         ++        D  + +E    
Sbjct: 256 RTKQPPAFDQVKDQIRSIIMRERYVETVKKLRDGMKIDYKDPAVEKAMKDAAAAQEGADK 315

Query: 413 IDLPL 417
            D P 
Sbjct: 316 DDAPE 320



 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/159 (8%), Positives = 53/159 (33%), Gaps = 3/159 (1%)

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
            +     D+++  +   V+   + +    +  ++A   +++  + G  F D+ K      
Sbjct: 148 DDVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKESSTDG 204

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
              N  +           +     F+         P++    + V ++ + +       D
Sbjct: 205 TAANGGDLGYFAEGQMVPEFEKAAFALKPGEYTKEPVQTQFGFHVIQLEDRRTKQPPAFD 264

Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           +    +  ++ ++     +  L+    +   D  +++ +
Sbjct: 265 QVKDQIRSIIMRERYVETVKKLRDGMKIDYKDPAVEKAM 303


>gi|57238208|ref|YP_178711.1| major antigenic peptide PEB4 [Campylobacter jejuni RM1221]
 gi|86149798|ref|ZP_01068027.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86151529|ref|ZP_01069743.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|88596967|ref|ZP_01100203.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|205355446|ref|ZP_03222217.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|218562247|ref|YP_002344026.1| major antigenic peptide PEB-cell binding factor [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|315124114|ref|YP_004066118.1| peptidyl-prolyl cis-trans isomerase [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|123141587|sp|Q0PAS1|CBF2_CAMJE RecName: Full=Cell-binding factor 2; AltName: Full=Major antigen
           peb4A; Flags: Precursor
 gi|671840|emb|CAA59175.1| cell binding factor 2 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|57167012|gb|AAW35791.1| major antigenic peptide PEB4 [Campylobacter jejuni RM1221]
 gi|85839616|gb|EAQ56876.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85841158|gb|EAQ58406.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|88190656|gb|EAQ94629.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359953|emb|CAL34742.1| major antigenic peptide PEB-cell binding factor [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|205346680|gb|EDZ33312.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|284925857|gb|ADC28209.1| major antigenic peptide PEB-cell binding facto [Campylobacter
           jejuni subsp. jejuni IA3902]
 gi|315017836|gb|ADT65929.1| peptidyl-prolyl cis-trans isomerase [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315058010|gb|ADT72339.1| Cell binding factor 2 precursor [Campylobacter jejuni subsp. jejuni
           S3]
 gi|315928817|gb|EFV08084.1| PPIC-type PPIASE domain protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 273

 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293
            +    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK        
Sbjct: 104 EKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELD 163

Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
            KF +LA+E+            LG F +  +      D+ F+L      T  +  +FGY 
Sbjct: 164 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 222

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +    N +    + F EVK+ I N ++  +  + + +  + L
Sbjct: 223 VILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDL 264


>gi|332293063|ref|YP_004431672.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332171149|gb|AEE20404.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 647

 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 82/679 (12%), Positives = 197/679 (29%), Gaps = 107/679 (15%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +FL+++F+           F+ +    ++++  + +    F   +++   +I +      
Sbjct: 4   LFLLLIFLC-------GFSFAHAQKDILLTINNEVIDSEEFTRVYEKNSELIKE------ 50

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
                      +  L   +      Q    +GL                +  + + +   
Sbjct: 51  -----DESNAPEDYLKLFIDYKLKVQEAYRLGLN-----------NKKSYQDELSAYRAQ 94

Query: 136 VFVSRLAREGINEK---EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           +  + L    + E+   E  D     L+   ++        PS+ L+          R +
Sbjct: 95  LAKNYLNDVKVTEELVKEAYDRTVNELNARHILVRVSPDASPSDTLVAYRNITQARERII 154

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-- 250
           +             DPS        +K   N    +  ++ Y   +        E+S   
Sbjct: 155 NGENFEKVARAISEDPSA-------KKNGGNLGWFKAFKMVYPFENAAYNTAINEVSKPF 207

Query: 251 -DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKKFIQLA 300
                    +      S     V  ++            ++  +E  + L +G  F  +A
Sbjct: 208 RTSFGYHIVQPIAARKSKGKVQVAHIMVALNQNDSTIIPEERINEVSKLLSQGASFETVA 267

Query: 301 EEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
                  +    G     F +  +   +   + FSL   G  +      FG+ I  + + 
Sbjct: 268 LNYSDDRASYKKGGKLEEFEQGQLSSAAFEKTAFSLENIGAISQPFKTEFGWHIIKLLSK 327

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS----------- 405
            P    ++ + +  + N++     ++ +                 + +            
Sbjct: 328 TP--VPTYLDARVALTNKVTRDARAQVISNKLDSKLRNRYNVALNEGLQSYLESLFPEKY 385

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVA-AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
              KIV  + P +      +  K+           L   + ++   S+   V     S++
Sbjct: 386 SETKIVLNNEPALSNVAFTLGKKKATYTYKMVADYLLAKYPRNKFRSRSQFVEEGIQSFV 445

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKT-----VKTAEEVSSKANQLVLEYSK------- 512
            V +K        + ++   D+ K++K            +  KA Q  +   +       
Sbjct: 446 SVVLKNYHLEHLEEEDQDFADILKEYKEGLLLFDLLETNIWKKAQQDSIGLQEFFLRNKE 505

Query: 513 ---------------EGKNFRD-----IGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
                          + K+        I K L       +  ++ D            Q 
Sbjct: 506 DYRSVKTYEATVCTTKSKSLAKNYRKIISKGLSPDEAVLSLKSKSDTPVLLSNRVLTQQE 565

Query: 553 FSGPVEMVKCFP----IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
           F  P            IE+G +++V+ VT       Q        +     K+L +  + 
Sbjct: 566 F--PKGQYLSIGISDLIEDGDNFIVYDVTAITEARDQLLKDVRGVVISDYQKELENKFVK 623

Query: 609 YLKSQYSVTVHDNLIQRYL 627
            L+ + ++T++  ++ R +
Sbjct: 624 NLRDKSTITINKEILNRLI 642


>gi|172056725|ref|YP_001813185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium
           sibiricum 255-15]
 gi|259534741|sp|B1YK87|PRSA_EXIS2 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|171989246|gb|ACB60168.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium
           sibiricum 255-15]
          Length = 304

 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 80/234 (34%), Gaps = 28/234 (11%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
           GG      + D+A +      +    +            ++  +    +K KD +   E 
Sbjct: 32  GGEVNKADVQDEAYQKAGAQIAFQQTMNKLLEKEYGKKVTDKEVEAEVKKTKDQFPDKEQ 91

Query: 230 -----------------KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
                            K +   +     K  K ++++ E++  + + K           
Sbjct: 92  FNTTLQTAGIKNEKEFEKVLRTQMLLKEAKSAKSKVTDKEIEDRFNQEKV------EVKA 145

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADS 328
             ++   + EA    + L +G  F ++A+ +    G +     LG F+K  + +    + 
Sbjct: 146 SHILVEKESEAKAIKKQLDEGGDFAKIAKAKSTDTGSATKGGDLGYFTKGKMVE-EFENY 204

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            F    +G  +  I   FGY I  V++ K     + ++    I   +   K+++
Sbjct: 205 AFKDGVEGKISDPIKTQFGYHIIKVTDRKEKKDFTLEKESDRIKKALAEEKSAQ 258


>gi|47568364|ref|ZP_00239065.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241]
 gi|47554912|gb|EAL13262.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241]
          Length = 285

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 82/198 (41%), Gaps = 14/198 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248
           Y ++    +      S+A + +  +K K+ Y        E  R+       ++ + K+ +
Sbjct: 57  YEMMAQDVITKKYKVSDADVDKEVQKAKNQYGDQFTAVLENNRLKDEADFKNQIKFKLAM 116

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           +    ++  EK+ + ++ PEI+    ++  ++ EA E  + L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSVTEKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L K G  +  +    GY I  ++  K      F
Sbjct: 176 SKEKGGDLGYFNSGKMT-PEFETAAYKL-KVGQISDPVQSPNGYHIIKLTGKKD--LQPF 231

Query: 365 QEVKKDIANQMRITKASE 382
            EVK  I   +   + ++
Sbjct: 232 NEVKDSIRKNLEAERIAD 249



 Score = 37.7 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            GK     P  E   +++            V  P+G Y  +++        +   EV   
Sbjct: 188 SGK---MTPEFETAAYKL----KVGQISDPVQSPNG-YHIIKLTGKKD--LQPFNEVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  + A+
Sbjct: 238 IRKNLEAERIAD 249


>gi|294085490|ref|YP_003552250.1| PPIC-type PPIASE domain-containing protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665065|gb|ADE40166.1| PPIC-type PPIASE domain protein [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 278

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 57/144 (39%), Gaps = 4/144 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           +++++ LQ  Y+       S E  T   ++   + +A    +SL  G  F ++A+E+   
Sbjct: 113 KMTDEALQQAYDTFVADEASREQITASHILVAAEDDAVAIIKSLNDGADFAEIAKEKSTG 172

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG+F +  +   +   + F+L   G     +   FG+ +  VS        S
Sbjct: 173 PSGPNGGELGTFGRGQMV-PAFETAAFALPAGGFSAKPVQTQFGWHVIKVSEKAVKPAPS 231

Query: 364 FQEVKKDIANQMRITKASEKVKED 387
           F  ++  + N +        ++  
Sbjct: 232 FDAMRDQLVNSLSRQHLGRVIESL 255



 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 9/153 (5%)

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEE---------VSSKANQLVLEYSKEGKNFRDIGKNLG 525
           R++  +E L      +   + + E          +      +++   +G +F +I K   
Sbjct: 111 REKMTDEALQQAYDTFVADEASREQITASHILVAAEDDAVAIIKSLNDGADFAEIAKEKS 170

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
                 N                 +  F+ P       P++    + V KV+   V P  
Sbjct: 171 TGPSGPNGGELGTFGRGQMVPAFETAAFALPAGGFSAKPVQTQFGWHVIKVSEKAVKPAP 230

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
             D     L   +++  L  VI  L++  ++ +
Sbjct: 231 SFDAMRDQLVNSLSRQHLGRVIESLRADQTIEL 263


>gi|297537786|ref|YP_003673555.1| SurA domain-containing protein [Methylotenera sp. 301]
 gi|297257133|gb|ADI28978.1| SurA domain protein [Methylotenera sp. 301]
          Length = 448

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 64/458 (13%), Positives = 139/458 (30%), Gaps = 71/458 (15%)

Query: 5   IRKASRTWVAK------IFLVVLFVPFLIWGLSDALFSVSG---SSTVVSVGRQKVPFSS 55
           +R   +  V K          +L    L  G      +         V  V +  +    
Sbjct: 1   MRTLIKHIVIKHSAIKHAIQFILLASVLFIGNQFNAQAADIVKLDRIVAIVDQTVITEQE 60

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +          ++      +E      L K+IL+ L++     Q+   IGL+ D  ++
Sbjct: 61  LESRIATVTAQFKKQ-----GTELPEESVLRKQILERLITDTLQIQYAAQIGLKVDDNQL 115

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM-----LSRTDVVGMFVG 170
              + R        N  +   F   LA++GI+ +++            L   +V G    
Sbjct: 116 DKTVERI----ADQNNLTLTEFSEALAKDGISMRKFRADIRNEITVARLREREVDGRVNV 171

Query: 171 GMRPSNLLLDQAKRFYFENRSVDY-----------IVLNNRHVPAIAD---------PSN 210
                +  L             +               + +   A  D          S 
Sbjct: 172 SESEIDNYLTSQASLNENTDEFEISHILIRTPEEGATEDIQKAKAKVDEALSQLNSGVSF 231

Query: 211 AVLTQWFEKYKDNYRA-----PEYKRISYILFDVHEKEKKIEISN--------DELQAEY 257
           A ++  F    +          +  ++  +  D  +  +  E+S           L+   
Sbjct: 232 AKVSASFSDAPNALEGGSLGWKKGSQMPALFLDALKNMQAGEVSAPLRSPNGFHLLKLTN 291

Query: 258 EKNKEKYFSPEIRTVEQLVFP-----NQKEA----DEAFQSLKKGKKFIQLAEEQGKSL- 307
           ++        +      ++       + KEA    D   + L  G+KF  LA +  +   
Sbjct: 292 KRGGNSPLVIQQTHARHILIKITEVMSDKEAETKIDAIKERLDNGEKFEVLARQFSEDST 351

Query: 308 --SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
             +   L   +          +++ +L K G  +  +   FG+ I  V   + S  +S +
Sbjct: 352 ASNGGDLNWVNPGDTV-PPFENAMNAL-KDGQISAPVRSQFGWHIIQVMERR-SQDMSKE 408

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             +     ++R  KA E  ++  + L +   +   +++
Sbjct: 409 SARLKARQEIRARKADEAYQDWIRELRDRAYVELRLED 446



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 101/303 (33%), Gaps = 33/303 (10%)

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF----- 277
            +RA     I+       E + ++ +S  E+            + +   +  ++      
Sbjct: 146 KFRADIRNEITVARLREREVDGRVNVSESEIDNYLTSQASLNENTDEFEISHILIRTPEE 205

Query: 278 -------PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLAD 327
                    + + DEA   L  G  F +++        +L   SLG      +P +   D
Sbjct: 206 GATEDIQKAKAKVDEALSQLNSGVSFAKVSASFSDAPNALEGGSLGWKKGSQMPAL-FLD 264

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKVK 385
           ++ ++ + G+ +  +    G+ +  ++N +   +    +    + I  ++    + ++ +
Sbjct: 265 ALKNM-QAGEVSAPLRSPNGFHLLKLTNKRGGNSPLVIQQTHARHILIKITEVMSDKEAE 323

Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
                ++E L  G   + ++R+      +       G          +P  E  +  +  
Sbjct: 324 TKIDAIKERLDNGEKFEVLARQFS----EDSTASNGGDLNWVNPGDTVPPFENAMNAL-- 377

Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
                 KD  ++ P  S     I + +  R  D   E      +++ +  K  E      
Sbjct: 378 ------KDGQISAPVRSQFGWHIIQVMERRSQDMSKESARLKARQEIRARKADEAYQDWI 431

Query: 504 NQL 506
            +L
Sbjct: 432 REL 434


>gi|75674587|ref|YP_317008.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           winogradskyi Nb-255]
 gi|74419457|gb|ABA03656.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           winogradskyi Nb-255]
          Length = 301

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 71/176 (40%), Gaps = 6/176 (3%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  +++  ++  Y    ++  S +      ++ P ++EA +  + LKKG  F +LA+++ 
Sbjct: 127 KAALTDSAMKTVYTDASKQITSEQEVHARHILVPTEEEAKKVEEELKKGADFAELAKKES 186

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           K         LG F+KE +     +   F+L + G  +  +   FG+ I  V   +    
Sbjct: 187 KDPGASDGGDLGFFTKEQMV-PDFSKVAFAL-EPGKISDPVKTQFGWHIIKVEEKRARKA 244

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
             F +VK  I   +   KA  +     +   +   L    D+ ++  K      P 
Sbjct: 245 PDFDQVKPQIEQFVTR-KAQAEYVAKLRETAKIERLDKPADDKTKSAKPADDKTPA 299


>gi|229084142|ref|ZP_04216431.1| Foldase protein prsA 1 [Bacillus cereus Rock3-44]
 gi|228699178|gb|EEL51874.1| Foldase protein prsA 1 [Bacillus cereus Rock3-44]
          Length = 285

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 86/242 (35%), Gaps = 35/242 (14%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I + E+ +          + GM                    E   V+   ++++ V   
Sbjct: 33  ITKDEFYEKMKDRAGSQILRGMV------------------LEKVLVENHKVDDKEVDKK 74

Query: 206 ADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
            D     L   F+   K      +  + S        K  +  I+  EL+  Y+      
Sbjct: 75  FDEYKKQLGDQFDAALKQQGFTEKTFKESVRAELAMTKAIEGSITEKELKENYK------ 128

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320
             PEI+    ++  ++  A +  + L +GK F +LA++  +          LG F    +
Sbjct: 129 --PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGYFGPGKM 185

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 D+ + + KK + +  +   FGY I  V++IK     SF + K DI   +   K 
Sbjct: 186 VK-EFEDAAYKM-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFDDSKADIKKDLVAKKM 242

Query: 381 SE 382
            +
Sbjct: 243 QD 244



 Score = 37.7 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 98/259 (37%), Gaps = 54/259 (20%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIR--TVEQLVFP----NQKEADEAFQSLKK--GKKFIQ 298
           +I+ DE    YEK K++  S  +R   +E+++      + KE D+ F   KK  G +F  
Sbjct: 32  DITKDE---FYEKMKDRAGSQILRGMVLEKVLVENHKVDDKEVDKKFDEYKKQLGDQFDA 88

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
             ++QG          F+++   +   A+   + A +G  T                   
Sbjct: 89  ALKQQG----------FTEKTFKESVRAELAMTKAIEGSITE------------------ 120

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
                 +E+K++   +++ +    K +   K+++E L  G S +E++++    +      
Sbjct: 121 ------KELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 174

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G    GK V         + +    +   S+          Y  +++ +     ++ 
Sbjct: 175 GDLGYFGPGKMVKEFEDAAYKMKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EKS 225

Query: 479 LEEVLTDVKKDWKTVKTAE 497
            ++   D+KKD    K  +
Sbjct: 226 FDDSKADIKKDLVAKKMQD 244


>gi|255022705|ref|ZP_05294691.1| foldase protein PrsA [Listeria monocytogenes FSL J1-208]
          Length = 262

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 82/228 (35%), Gaps = 26/228 (11%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224
                 +   L +A +  + N  V  +    + +      +   +   ++KY++ Y    
Sbjct: 30  TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSF 88

Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                     +    + + Y L      E  + +S  +L+  Y+  +          V  
Sbjct: 89  ESTLSSNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDIT------VRH 142

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331
           ++  ++  A E    LK G+KF  LA+E     +  + G     + P   D +   + ++
Sbjct: 143 ILVDDEATAKEIQTKLKNGEKFADLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYA 202

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           L  K D + ++  ++GY +  +         ++ + K ++      ++
Sbjct: 203 LENKDDVSGIVKSTYGYHLIQLVKKTEKG--TYDKEKANVKAAYIESQ 248


>gi|218232569|ref|YP_002365948.1| peptidylprolyl isomerase [Bacillus cereus B4264]
 gi|218160526|gb|ACK60518.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus B4264]
          Length = 285

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249
           Y ++    +       +  + +  EK K  Y    +    +Y L D  + + +I+     
Sbjct: 57  YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116

Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           N+ ++    EK+ + ++ PEI+    ++  ++ EA E    L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDIKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L   G  +  +  S GY +  +++ K      +
Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231

Query: 365 QEVKKDIANQMRITKASEKVKED 387
            EVK  I   +   + ++ V   
Sbjct: 232 DEVKNSIRKNLEEERTADPVFSK 254



 Score = 38.4 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           ++K     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 128 DIKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  +TA+ V SK  +L+ E  K+
Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263


>gi|229167152|ref|ZP_04294895.1| Foldase protein prsA 1 [Bacillus cereus AH621]
 gi|228616386|gb|EEK73468.1| Foldase protein prsA 1 [Bacillus cereus AH621]
          Length = 283

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 199 NRHVPAIADPSNAVLTQWFEKYK----DNYR-APEYKRISYILFDVHEKEKKIEISNDEL 253
           N+ +      S+    +  E  K    D ++ A E   +          + +I +     
Sbjct: 60  NKALLDKYKVSDEEAKKQVEAAKEQMGDKFKVALEQVGLKNEDELKERMKPEIALEKAIR 119

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
               +K+ +    PE++ V  ++  ++K A E  + +  G+ F  LA++  +       G
Sbjct: 120 ATVTDKDVKDNHKPEMK-VSHILVKDEKTAKEVKEKINNGEDFTALAKQYSEDTVSKEQG 178

Query: 314 SFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                + P        ++ + L   G  +  I  S+GY I  V++ K      F EVK  
Sbjct: 179 GEIAGFAPGQTVKEFEEAAYKL-DAGQVSEPIKTSYGYHIIKVTDKKE--LKPFDEVKDT 235

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
           I   +   +  +   +  +++   L     +    +  K  
Sbjct: 236 IRKDLEQQRLQDATGKWKQQVINDLLKEADIKVTDKEFKDT 276



 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 52/148 (35%), Gaps = 10/148 (6%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK +   +M+++    K ++  K ++E +  G     ++++    ++            
Sbjct: 126 DVKDNHKPEMKVSHILVKDEKTAKEVKEKINNGEDFTALAKQYSEDTVSKEQGGEIAGFA 185

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V         L      +   +           Y  +++ +      +  +EV   
Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPIKTSY--------GYHIIKVTDKKE--LKPFDEVKDT 235

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++KD +  +  +       Q++ +  KE
Sbjct: 236 IRKDLEQQRLQDATGKWKQQVINDLLKE 263


>gi|239995521|ref|ZP_04716045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alteromonas
           macleodii ATCC 27126]
          Length = 101

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           MLE IR+ S+   A   + ++ + F+  G+   L S SG++ V +V  +++       ++
Sbjct: 1   MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYLTS-SGTTAVATVNGEEISAQELERAY 59

Query: 61  KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATL 99
           + +   +  + G  +    S         + +LD L++   +
Sbjct: 60  QNQRAQMESQYGESIAQLFSSEQYLADFRRNVLDRLIAEKLI 101


>gi|260428957|ref|ZP_05782934.1| ppic-type ppiase domain protein [Citreicella sp. SE45]
 gi|260419580|gb|EEX12833.1| ppic-type ppiase domain protein [Citreicella sp. SE45]
          Length = 282

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 5/159 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            +S++ +QA Y+         +      ++   ++EA    + L  G  F +LA+ +   
Sbjct: 114 AVSDEAVQAAYDAEYATAELGKEFNASHILVETEEEAQALIEELNGGADFAELAKTKSTG 173

Query: 307 LSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG F    + +     +       GD +  +   FG+ +  +++ +      
Sbjct: 174 PSGPNGGELGWFGPGMMVEP--FQAAVEQMSVGDISAPVQTQFGWHVIKLNDERNKEAPQ 231

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            +EV+ DI  +++       + E     E        +D
Sbjct: 232 LEEVRADIELKLQQEAVQNYIDEKLGAAEVTRTDKADID 270


>gi|228911670|ref|ZP_04075447.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 200]
 gi|228847994|gb|EEM92871.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 200]
          Length = 275

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 71/212 (33%), Gaps = 21/212 (9%)

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           +       E   ++   ++N       D     + + F+      R          +   
Sbjct: 40  EVLSSMMIEQLLLNKYKVSNDEAQKKVDEYKKQMGENFKSTLSQLRFQNEDEFKEKMIKP 99

Query: 240 H---EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
               EK  K  I+  EL+  Y+             V  ++  ++K+A E    L  G  F
Sbjct: 100 QIALEKAIKASITEKELKDYYK---------PTLKVSHILVKDEKKAQEIKDKLNNGGDF 150

Query: 297 IQLAEEQGKSLS----DISLGSFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             LA+E  +          LG      +   D    ++ + L + G  +  +  SFGY I
Sbjct: 151 ASLAKEHSEDPGSKEQGGDLGELDAVKMEPMDSKFKEATYKL-EVGQISEPVKSSFGYHI 209

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             V++ K      F + K +I  ++   +A  
Sbjct: 210 IKVTDKKE--LKPFDQEKDNIQKELETMRAKN 239


>gi|313607374|gb|EFR83765.1| foldase protein PrsA [Listeria monocytogenes FSL F2-208]
          Length = 257

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 86/214 (40%), Gaps = 32/214 (14%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247
           +      S+  + + F +YK  Y                    ++ Y L      E   +
Sbjct: 26  LSDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 85

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
            S+  L+  Y+      + P+I TV  ++  ++ +A E  Q LK G KF  LA+E     
Sbjct: 86  TSDKVLKDYYKT-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 139

Query: 308 S----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           +    D  L  F    + D +   + ++L  KGD +  +   +GY I  +   KP+   +
Sbjct: 140 ATKENDGQLAPFGPGKM-DPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTT 196

Query: 364 FQEVKKDIAN-----QMRITKASEKVKEDYKRLE 392
           F++ KK +       Q+      + +KE++K+  
Sbjct: 197 FEKDKKAVKASYLESQLTTENMQKTLKEEFKKAN 230


>gi|323526035|ref|YP_004228188.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
 gi|323383037|gb|ADX55128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
          Length = 259

 Score =  100 bits (248), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 6/146 (4%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK   ++ E+ A Y    +     E   +  ++  N+++A +    +K G  F +L
Sbjct: 103 EDFVKKNAPTDAEVTARYNALIKDAGGKEY-HLHHILVDNEQQAKDLIAKIKGGASFEEL 161

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355
           A++  K       G    +S         AD+   L +KG  +   +H  FG+ I  V +
Sbjct: 162 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHL-QKGQMSDTPVHTQFGWHIIRVDD 220

Query: 356 IKPSFTVSFQEVKKDIANQMRITKAS 381
           ++       ++V+  I  Q++  K  
Sbjct: 221 VRSITPPPLEQVRPQIVQQIQQEKLQ 246



 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           ++  K L   +  G S +E++++        P     G D+   +  A     +      
Sbjct: 142 EQQAKDLIAKIKGGASFEELAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFADAAT 195

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
                   D  V    G +  +++ +        LE+V   + +  +  K  
Sbjct: 196 HLQKGQMSDTPVHTQFG-WHIIRVDDVRSITPPPLEQVRPQIVQQIQQEKLQ 246



 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 41/119 (34%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G +F ++ K       +      +D ++ K +  +           
Sbjct: 142 EQQAKDLIAKI-KGGASFEELAKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P+     + + +V + +       ++    + Q + ++ L +    L+    + 
Sbjct: 201 QMSDTPVHTQFGWHIIRVDDVRSITPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259


>gi|229143873|ref|ZP_04272292.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST24]
 gi|228639634|gb|EEK96045.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST24]
          Length = 285

 Score =  100 bits (248), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249
           Y ++    +       +  + +  EK K  Y    +    +Y L D  + + +I+     
Sbjct: 57  YEMMAQDIITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116

Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           N+ ++    EK+ + ++ PEI+    ++  ++ EA E    L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L   G  +  +  S GY +  +++ K      +
Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NIGQISNPVKSSNGYHVIKLTDKKA--LKPY 231

Query: 365 QEVKKDIANQMRITKASEKVKED 387
            EVK  I   +   + ++ V   
Sbjct: 232 DEVKDSIRKNLEEERTADPVFSK 254



 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 188 SGT------MAPEFETAAYKLNIGQISNPVKS--SNGYHVIKLTDKK--ALKPYDEVKDS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  +TA+ V SK  +L+ E  K+
Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263


>gi|330689730|pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein
           Cj1289 Are Two Structurally-Related Sura-Like Chaperones
           In The Human Pathogen Campylobacter Jejuni
          Length = 252

 Score =  100 bits (248), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293
            +    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK        
Sbjct: 83  EKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELD 142

Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
            KF +LA+E+            LG F +  +      D+ F+L      T  +  +FGY 
Sbjct: 143 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 201

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +    N +    + F EVK+ I N ++  +  + + +  + L
Sbjct: 202 VILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDL 243


>gi|320332054|gb|EFW87990.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 440

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 31  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++  +  +   + +
Sbjct: 86  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141

Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V                 + L  DQ K    E   +  I++      +      A 
Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEKFHLANILIATPDSASSDAIQAAA 201

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + + +  
Sbjct: 202 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 261

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            ++ A++ +  ++
Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 321

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F +LA+    + G +L+   L       +        + +   +G+ +     ++G
Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 379

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + ++  A N +R  K  E+++   +++ +   +   +   ++
Sbjct: 380 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437

Query: 407 REK 409
             +
Sbjct: 438 AAQ 440


>gi|227499598|ref|ZP_03929705.1| possible peptidylprolyl isomerase [Anaerococcus tetradius ATCC
           35098]
 gi|227218357|gb|EEI83611.1| possible peptidylprolyl isomerase [Anaerococcus tetradius ATCC
           35098]
          Length = 249

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 78/177 (44%), Gaps = 6/177 (3%)

Query: 217 FEKYKDNYRAPEYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++K K+     E  + + +  + +H+  +++++   E++  YE NKE    P +     +
Sbjct: 63  YDKDKEFVDELELVKNNMLKNYAMHKIFEQVKLDEAEVKQYYEANKETLNPPVLYEASHI 122

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSL 332
           +  +  EA +  + + KG +F   A++     S     SLG F K  +      D + S+
Sbjct: 123 LVNDLAEAQKIKEEIDKGLEFAVAAKKYSIDPSKANGGSLGKFPKGVMVK-EFQDGLDSI 181

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
              G+ +  I   FGY +  + N +   T SF ++K  +  ++ + K  E   +   
Sbjct: 182 -NIGEVSKPIKSQFGYHLIKLENKENVDTPSFDKIKDQVYQRLLMVKRQEAYLDKLS 237


>gi|221215070|ref|ZP_03588037.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           multivorans CGD1]
 gi|221165006|gb|EED97485.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           multivorans CGD1]
          Length = 260

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 3/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               KK + ++ E++A Y++  +         +  ++  ++++A E    +K G KF  L
Sbjct: 103 ENFLKKNQPTDAEVKARYDELVKTAGGNREYHLHHILVDSEQQAKELIAKIKGGAKFEDL 162

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    +S         A +   L K       +   FG+ I  V +I
Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDEPVKTQFGWHIIRVDDI 222

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +      F +VK  IA Q+   K  
Sbjct: 223 RDVAPPPFAQVKAQIAQQLVQQKLQ 247



 Score = 40.4 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A +L+ +  K G  F D+ K       +      +D ++ K +  +  +        
Sbjct: 143 EQQAKELIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P++    + + +V + +        +  + + Q + +  L +    L+ Q  + 
Sbjct: 202 QMTDEPVKTQFGWHIIRVDDIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQQAKIQ 260



 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 36/123 (29%), Gaps = 10/123 (8%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           ++  K L   +  G   ++++++        P     G D+   +  A     +      
Sbjct: 143 EQQAKELIAKIKGGAKFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAQ 196

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSS 501
                   D  V    G +  +++ +          +V   + +     K     E +  
Sbjct: 197 KLQKGQMTDEPVKTQFG-WHIIRVDDIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQ 255

Query: 502 KAN 504
           +A 
Sbjct: 256 QAK 258


>gi|217958742|ref|YP_002337290.1| peptidylprolyl isomerase [Bacillus cereus AH187]
 gi|229137952|ref|ZP_04266551.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST26]
 gi|217064761|gb|ACJ79011.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH187]
 gi|228645609|gb|EEL01842.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST26]
          Length = 285

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 83/198 (41%), Gaps = 14/198 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249
           Y ++    +      S+  + +  +K K+ Y    +    +  L D  + + +I+     
Sbjct: 57  YEMMAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLAM 116

Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           N+ ++    EK+ + ++ PEI+    ++  ++ EA E  + L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L K G  +  +    GY I  +++ K      +
Sbjct: 176 SKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVASPNGYHIIKLTDKKA--LKPY 231

Query: 365 QEVKKDIANQMRITKASE 382
            EVK  I   +   + S+
Sbjct: 232 DEVKDSIRKNLEEERISD 249



 Score = 39.6 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+     P  E   +++          + VA P+G Y  +++ +      +  +EV   
Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVASPNG-YHIIKLTDKK--ALKPYDEVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  + ++
Sbjct: 238 IRKNLEEERISD 249


>gi|150388008|ref|YP_001318057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           metalliredigens QYMF]
 gi|149947870|gb|ABR46398.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           metalliredigens QYMF]
          Length = 319

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/364 (12%), Positives = 106/364 (29%), Gaps = 93/364 (25%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG------LDKKILDN 92
                  V    V    F  +          + G+  +  +    G      + + I++ 
Sbjct: 32  SQDAAAEVNGATVSMEEFDKTLALFKLSYEMQYGYNEDIFQQDIGGMTLLENIKEGIMEK 91

Query: 93  LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
           L+S   + +   + GL      +                  ++ +           +E  
Sbjct: 92  LISDVLIAEKAVESGLTVSEEEITEA---------------YEPYRVY--------EESD 128

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
           ++++  L   ++   F+      ++LL + + FY EN  +                +   
Sbjct: 129 ENFSAFLKENEIDETFIREQVKKDILLFKYRDFYNENLEM----------------TEEA 172

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
             ++F++  + +   E                                          + 
Sbjct: 173 ARKFFDENPEMFSTQEA-----------------------------------------SA 191

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADS 328
             ++  +   ADE    L+ G+ F  LA+E             LG F +  +      ++
Sbjct: 192 RHILVADLALADELVVRLESGEDFATLAQEYSTDPGSAVQGGDLGFFPRGVMV-PEFEEA 250

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
            F+    G+    +    GY I  V +   +    F E+K+ I   ++  +  + ++E  
Sbjct: 251 SFT-QPIGEVGAPVQTQHGYHIILVEDRVDNSY-DFDEMKESIMGYLKNLEFEKHLEELV 308

Query: 389 KRLE 392
              E
Sbjct: 309 GNAE 312


>gi|78066682|ref|YP_369451.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
 gi|77967427|gb|ABB08807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
          Length = 260

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 3/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               KK + ++ E++A Y+   +         +  ++  N+++A +    +K G KF  L
Sbjct: 103 ESFLKKNQPTDAEVKARYDDLVKGAGGNREYHLHHILVDNEQQAKDLIAKIKAGAKFEDL 162

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           A++  K       G       P   + +  +     +KG  T   +   FG+ I  V +I
Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRVDDI 222

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +      F +VK  IA Q+   K  
Sbjct: 223 RDIAPPPFDQVKAQIAQQLVQQKLQ 247



 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G  F D+ K       +      +D ++ K +  +  +        
Sbjct: 143 EQQAKDLIAKI-KAGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P++    + + +V + +       D+  + + Q + +  L +    L+ Q  + 
Sbjct: 202 QMTDTPVKTQFGWHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260



 Score = 38.0 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 7/112 (6%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           ++  K L   +  G   ++++++        P     G D+   +  A     +      
Sbjct: 143 EQQAKDLIAKIKAGAKFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAQ 196

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
                   D  V    G +  +++ +         ++V   + +     K  
Sbjct: 197 KLQKGQMTDTPVKTQFG-WHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQ 247


>gi|329901823|ref|ZP_08272915.1| Peptidyl-prolyl cis-trans isomerase domain protein
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549006|gb|EGF33618.1| Peptidyl-prolyl cis-trans isomerase domain protein
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 244

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +  KK  +S+ +++AEY+K K      E R    ++   + EA      LK G KF  LA
Sbjct: 90  DYVKKHPVSDADIKAEYDKFKATAGDKEYR-ARHILVEKEDEAKAIIVKLKAGAKFEDLA 148

Query: 301 E---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +   + G + +   L   S         +D++ +LAK       +   FG+ +  + + +
Sbjct: 149 KASKDPGSAANGGDLDWASPASFVKP-FSDAMVALAKGSYTEVPVKTQFGFHVIKLEDTR 207

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +   + +EVK  I+  ++  K  E  +E   + +
Sbjct: 208 AAKVPTLEEVKPQISESLQQKKLQEYQQELRAKAK 242



 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 46/130 (35%), Gaps = 1/130 (0%)

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
           K+++      E   +A  ++++  K G  F D+ K         N  +        F   
Sbjct: 116 KEYRARHILVEKEDEAKAIIVKL-KAGAKFEDLAKASKDPGSAANGGDLDWASPASFVKP 174

Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
               + +         P++    + V K+ +++   V   ++    +++ + +  L    
Sbjct: 175 FSDAMVALAKGSYTEVPVKTQFGFHVIKLEDTRAAKVPTLEEVKPQISESLQQKKLQEYQ 234

Query: 608 AYLKSQYSVT 617
             L+++  V 
Sbjct: 235 QELRAKAKVQ 244



 Score = 37.3 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 11/74 (14%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +  +  V  + +P S      KQ                +A +  L K + + L++   L
Sbjct: 8   AQNLAVVNGKSIPSSRADLMVKQ-----------AATQGQADTPELRKMVKEELINREVL 56

Query: 100 DQFIEDIGLEADHG 113
            Q  + +GL     
Sbjct: 57  VQEADKLGLGNSAD 70


>gi|300704055|ref|YP_003745657.1| peptidylprolyl isomerase; exported protein [Ralstonia solanacearum
           CFBP2957]
 gi|299071718|emb|CBJ43042.1| Putative Peptidylprolyl isomerase; exported protein [Ralstonia
           solanacearum CFBP2957]
          Length = 265

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 5/160 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K    + DEL  +YEK K ++ + +      ++   + +A      LK G  F ++
Sbjct: 102 EDYVKNSPTTEDELHKQYEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEEI 161

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFT-PVIHGSFGYVIAHVSNI 356
           A+ Q K     + G       P   + +  +  +  KKG+ T   +   FG+ +  + + 
Sbjct: 162 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEITLTPVKTQFGWHVIRLDDT 221

Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394
           + +   +F++VK  +   M   +     K +   K L E 
Sbjct: 222 RDAKIPAFEDVKPQLLEMMMGDQNWQRAKFQAMLKDLREK 261


>gi|289209139|ref|YP_003461205.1| peptidylprolyl isomerase [Thioalkalivibrio sp. K90mix]
 gi|288944770|gb|ADC72469.1| Peptidylprolyl isomerase [Thioalkalivibrio sp. K90mix]
          Length = 475

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/416 (11%), Positives = 127/416 (30%), Gaps = 68/416 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  VG   V     +         + ++     + +      L +++++ L+     
Sbjct: 71  DRILAVVGDDVVTQRELVERMNLVAQQMMERGTRPPDRD-----TLARQVMERLIVERVQ 125

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+  D   +   +        ++N+ +       L ++G++   + +     L
Sbjct: 126 LQEAQRVGINIDEMTLNRAMENI----ARENRMTLPQLRQALLQDGVDFNAFREQIRNEL 181

Query: 160 SRTDVVG-MFVGGMRPSNLLLD--------------------------------QAKRFY 186
           +   +        +R S+  +                                 Q     
Sbjct: 182 TVNQLQRRQVDNQIRVSDQEIADLIASESGAIDRGVRYRIAHIQVSLPRGADSGQIATAR 241

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            + R +   V       +    S +      E     +R      I  +        +  
Sbjct: 242 EKARELRQRVREGEDFAS-VAISESDAPDALEGGDLGWRT--AGEIPSVFAREAVLMRTG 298

Query: 247 EISND-------ELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSL 290
           EIS+         +    ++            V  ++            +++A+  +  +
Sbjct: 299 EISDVLRSPNGFHIMKLVDREGGDQTRVRQTQVRHILISPDQVRSDEEARRQAESLYNRI 358

Query: 291 KKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           ++G  F  LA     + G +     LG  S   +      +++ +L + G+ +  +   F
Sbjct: 359 REGSDFEALARANSDDPGSAAQGGQLGWISPGELV-PEFEEAMNAL-QPGEISEPVESQF 416

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
           G+ I  V + +     S ++++      ++  K  E+++   +RL +   +   +D
Sbjct: 417 GWHIIEVLDHRE-VDTSREQIRARAREILQNRKREEEIELWMRRLRDEAYVEYRVD 471



 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 106/308 (34%), Gaps = 33/308 (10%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278
           + +R      ++       + + +I +S+ E+                  +  +      
Sbjct: 171 NAFREQIRNELTVNQLQRRQVDNQIRVSDQEIADLIASESGAIDRGVRYRIAHIQVSLPR 230

Query: 279 ---------NQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLA 326
                     +++A E  Q +++G+ F  +A    +   +L    LG  +   IP V   
Sbjct: 231 GADSGQIATAREKARELRQRVREGEDFASVAISESDAPDALEGGDLGWRTAGEIPSVFAR 290

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-DIANQMR---ITKASE 382
           +++  L + G+ + V+    G+ I  + + +         V++  + + +      ++ E
Sbjct: 291 EAV--LMRTGEISDVLRSPNGFHIMKLVDREGGDQT---RVRQTQVRHILISPDQVRSDE 345

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
           + +   + L   +  G+  + ++R               G    G+ V   P  E+ +  
Sbjct: 346 EARRQAESLYNRIREGSDFEALARANSDDPGSAAQGGQLGWISPGELV---PEFEEAMNA 402

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
           +     P      V    G +  +++ +     D   E++    ++  +  K  EE+   
Sbjct: 403 L----QPGEISEPVESQFG-WHIIEVLDHR-EVDTSREQIRARAREILQNRKREEEIELW 456

Query: 503 ANQLVLEY 510
             +L  E 
Sbjct: 457 MRRLRDEA 464


>gi|161524535|ref|YP_001579547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans ATCC 17616]
 gi|189350709|ref|YP_001946337.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia multivorans
           ATCC 17616]
 gi|160341964|gb|ABX15050.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans ATCC 17616]
 gi|189334731|dbj|BAG43801.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia multivorans
           ATCC 17616]
          Length = 260

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 3/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               KK + ++ E++A Y+   +         +  ++  ++++A E    +K G KF  L
Sbjct: 103 ENFLKKNQPTDAEVKARYDDLVKTAGGNREYHLHHILVDSEQQAKELIAKIKGGAKFEDL 162

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    +S         A +   L K       +   FG+ I  V +I
Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDEPVKTQFGWHIIRVDDI 222

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +      F +VK  IA Q+   K  
Sbjct: 223 RDVAPPPFAQVKAQIAQQLVQQKLQ 247



 Score = 40.4 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A +L+ +  K G  F D+ K       +      +D ++ K +  +  +        
Sbjct: 143 EQQAKELIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P++    + + +V + +        +  + + Q + +  L +    L+ Q  + 
Sbjct: 202 QMTDEPVKTQFGWHIIRVDDIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQQAKIQ 260



 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/164 (10%), Positives = 47/164 (28%), Gaps = 19/164 (11%)

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKV---------KEDYKRLEEFLALGTSMDE 403
           + N       +  EVK    + ++    + +          ++  K L   +  G   ++
Sbjct: 102 IENFLKKNQPTDAEVKARYDDLVKTAGGNREYHLHHILVDSEQQAKELIAKIKGGAKFED 161

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
           ++++        P     G D+   +  A     +              D  V    G +
Sbjct: 162 LAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAQKLQKGQMTDEPVKTQFG-W 214

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSSKAN 504
             +++ +          +V   + +     K     E +  +A 
Sbjct: 215 HIIRVDDIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQQAK 258


>gi|228988998|ref|ZP_04149028.1| hypothetical protein bthur0001_56200 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228770720|gb|EEM19255.1| hypothetical protein bthur0001_56200 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 299

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 94/245 (38%), Gaps = 32/245 (13%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----- 224
            G    + L ++      +    D I L    +      S+  +    ++ K  +     
Sbjct: 40  SGTISKDELYNRMVDKIGQRTLDDLITLTV--LQKKYKVSDGEIDDEIKRLKSEFGNSFN 97

Query: 225 --------RAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                      E  +  I           + ++I + +L+A YE+ K     PEIR V  
Sbjct: 98  DFLSQNGVNNEEQLKDVIKLDKLKQKLALEHLKIQDKDLKALYEQKK-----PEIR-VSH 151

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIF 330
           ++  ++  A +    +  G+ F  LA+E  + ++       +G F +  +   +  D+  
Sbjct: 152 ILVSDETLAKDIKSKIDSGEDFGSLAKEFSQDIATKEKGGDIGYFKEGDMV-QAFQDAAR 210

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYK 389
            L K G+ +  +   FGY +  + + K     SF+++K  + +++   K    K+  + +
Sbjct: 211 KL-KVGEVSQPVKTEFGYHVIKLLDEK--KLPSFEQMKPQLQSELISNKMDQAKINAEIQ 267

Query: 390 RLEEF 394
           +L + 
Sbjct: 268 KLLDK 272


>gi|153951254|ref|YP_001398165.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938700|gb|ABS43441.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 273

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 21/243 (8%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVLTQWFEKY--K 221
             V G   S+  + +   F    R  D+  L +    A+       + +L    ++   K
Sbjct: 25  ATVNGKSISDTEVSEF--FASMLRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEK 82

Query: 222 DNYRAPEYKRISYILFD---VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           D     E  R    +       +    I+I   +++A Y++NK+KY  P     + ++  
Sbjct: 83  DPLYTKELDRAKDAILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVA 142

Query: 279 NQKEADEAFQSLKK------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADS 328
            +KEA +    LK         KF +LA+E+            LG F +  +      D+
Sbjct: 143 TEKEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDA 201

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
            F+L      T  +  +FGY +    N +    + F EVK+ I N ++  +  + + +  
Sbjct: 202 AFALKNGTITTTPVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKG 261

Query: 389 KRL 391
           + L
Sbjct: 262 QDL 264


>gi|229171909|ref|ZP_04299476.1| Foldase protein prsA 2 [Bacillus cereus MM3]
 gi|228611543|gb|EEK68798.1| Foldase protein prsA 2 [Bacillus cereus MM3]
          Length = 285

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 80/189 (42%), Gaps = 10/189 (5%)

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDELQAEY 257
            +      D  +  + +  ++Y D + A  E  R+       ++ + K+ ++    ++  
Sbjct: 66  TKKYKVSDDDVDKEVQKAKKQYGDQFTAVLENNRLKDEADFKNQIKFKLAMNEAIKKSVT 125

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLG 313
           EK+ + ++ PEI+    ++  ++ EA E  + L  G  F +LA+++ + L        LG
Sbjct: 126 EKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKDKGGDLG 184

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
            F+   +       + + L K G  +  +    GY I  +++ K      + EVK  I  
Sbjct: 185 YFNSGRMA-PEFETAAYKL-KVGQISNPVKSPNGYHIIKLTDKKD--LKPYDEVKDSIRK 240

Query: 374 QMRITKASE 382
            +   + ++
Sbjct: 241 NLEAERIAD 249



 Score = 38.4 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+     P  E   +++          + V  P+G Y  +++ +      +  +EV   
Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVKSPNG-YHIIKLTDKKD--LKPYDEVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  + A+
Sbjct: 238 IRKNLEAERIAD 249


>gi|217076606|ref|YP_002334322.1| basic membrane protein, putative [Thermosipho africanus TCF52B]
 gi|217036459|gb|ACJ74981.1| basic membrane protein, putative [Thermosipho africanus TCF52B]
          Length = 333

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 59/371 (15%), Positives = 113/371 (30%), Gaps = 80/371 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQE-----LGMISQKIGFVV-NSERARSVGLD--KKILD 91
           +STV  V  + +       +   +     +  + Q    V+ N+E    V L   + +LD
Sbjct: 24  TSTVAVVNGEAITLEQLNRAADVQKLMIGISQVDQTFFSVLSNTEEGVKVILRYKRVVLD 83

Query: 92  NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
           +LV+   + QF +  G       V   +                     L ++GI+EK +
Sbjct: 84  DLVNKLLIVQFAQKYGARLSEEEVRNVV--------------DKQISDYLDQQGIDEKTF 129

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
             +            M         +  +       E             V   A  S+ 
Sbjct: 130 DMYL-------QYANMGTLEDFKEKMYFETLVNLSLERL--------FNVVTKDATVSDE 174

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
            L  +++K+ D Y  P    +S                                      
Sbjct: 175 ELMDYYQKHIDEYSTPTQYTLSL------------------------------------- 197

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
              + F N+K A+     +  G+ F  +A E G  +S     + +++      L + I +
Sbjct: 198 ---IAFDNEKVANAVKTKIVSGETFDSIASEYG--ISQFKYENIAEDTTFPGKLWNYIKN 252

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             + G     I     Y I  V N+ P  +  F EV+++I+N +   K            
Sbjct: 253 APQ-GALLGPIDVDEKYYIFKVENVVPMQSKKFDEVREEISNMILSEKKKNMWANFIDSE 311

Query: 392 EEFLALGTSMD 402
                  ++++
Sbjct: 312 FSKFKNESTVE 322


>gi|148925955|ref|ZP_01809642.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|145844941|gb|EDK22045.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter
           jejuni subsp. jejuni CG8486]
          Length = 207

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293
            +    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK        
Sbjct: 38  EKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELD 97

Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
            KF +LA+E+            LG F +  +      D+ F+L      T  +  +FGY 
Sbjct: 98  AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 156

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +    N +    + F EVK+ I N ++  +  + + +  + L
Sbjct: 157 VILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDL 198


>gi|283956008|ref|ZP_06373497.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792484|gb|EFC31264.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 273

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293
            +    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK        
Sbjct: 104 DKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELD 163

Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
            KF +LA+E+            LG F +  +      D+ F+L      T  I  +FGY 
Sbjct: 164 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPIKTNFGYH 222

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +    N +    + F EVK+ I N ++  +  + + +  + L
Sbjct: 223 VILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDL 264


>gi|206560348|ref|YP_002231112.1| putative exported isomerase [Burkholderia cenocepacia J2315]
 gi|198036389|emb|CAR52285.1| putative exported isomerase [Burkholderia cenocepacia J2315]
          Length = 260

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 3/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               KK + ++ E++A Y++  +         +  ++  N+++A +    +K G KF  L
Sbjct: 103 EGFLKKNQPTDAEVKARYDELVKGVGGNREYHLHHILVDNEQQAKDLIAKIKGGAKFEDL 162

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           A++  K       G       P   + +  +     +KG  T   +   FG+ I  V +I
Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRVDDI 222

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +      F +VK  IA Q+   K  
Sbjct: 223 RDIAPPPFDQVKAQIAQQLVQQKLQ 247



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G  F D+ K       +      +D ++ K +  +  +        
Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P++    + + +V + +       D+  + + Q + +  L +    L+ Q  + 
Sbjct: 202 QMTDTPVKTQFGWHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260



 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 37/123 (30%), Gaps = 10/123 (8%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           ++  K L   +  G   ++++++        P     G D+   +  A     +      
Sbjct: 143 EQQAKDLIAKIKGGAKFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAQ 196

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSS 501
                   D  V    G +  +++ +         ++V   + +     K     E +  
Sbjct: 197 KLQKGQMTDTPVKTQFG-WHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQ 255

Query: 502 KAN 504
           +A 
Sbjct: 256 QAK 258


>gi|254247979|ref|ZP_04941300.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
 gi|124872755|gb|EAY64471.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
          Length = 260

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 3/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               KK + ++ E++  Y++  +         +  ++  N+++A +    +K G KF  L
Sbjct: 103 ESFLKKNQPTDAEVKTRYDELVKGVGGNREYHLHHILVDNEQQAKDLIAKIKGGAKFEDL 162

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    +S         A +   L K       +   FG+ I  V +I
Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDAPVKTQFGWHIIRVDDI 222

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +      F +VK  IA Q+   K  
Sbjct: 223 RDIAPPPFDQVKAQIAQQLVQQKLQ 247



 Score = 43.8 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G  F D+ K       +      +D ++ K +  +  +        
Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P++    + + +V + +       D+  + + Q + +  L +    L+ Q  + 
Sbjct: 202 QMTDAPVKTQFGWHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260



 Score = 38.8 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 37/123 (30%), Gaps = 10/123 (8%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           ++  K L   +  G   ++++++        P     G D+   +  A     +      
Sbjct: 143 EQQAKDLIAKIKGGAKFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAQ 196

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSS 501
                   D  V    G +  +++ +         ++V   + +     K     E +  
Sbjct: 197 KLQKGQMTDAPVKTQFG-WHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQ 255

Query: 502 KAN 504
           +A 
Sbjct: 256 QAK 258


>gi|257483108|ref|ZP_05637149.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 442

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 33  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 87

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++  +  +   + +
Sbjct: 88  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 143

Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V                 + L  DQ K    E   +  I++      +      A 
Sbjct: 144 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 203

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + + +  
Sbjct: 204 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 263

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            ++ A++ +  ++
Sbjct: 264 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 323

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F +LA+    + G +L+   L       +        + +   +G+ +     ++G
Sbjct: 324 NGEDFAELAKSFSEDPGSALNGGDLNWIDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 381

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + ++  A N +R  K  E+++   +++ +   +   +   ++
Sbjct: 382 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 439

Query: 407 REK 409
             +
Sbjct: 440 AAQ 442


>gi|107028909|ref|YP_626004.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116689933|ref|YP_835556.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
 gi|170733271|ref|YP_001765218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
 gi|105898073|gb|ABF81031.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116648022|gb|ABK08663.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
 gi|169816513|gb|ACA91096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
          Length = 260

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 3/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               KK + ++ E++A Y++  +         +  ++  N+++A +    +K G KF  L
Sbjct: 103 ESFLKKNQPTDAEVKARYDELVKGVGGNREYHLHHILVDNEQQAKDLIAKIKGGAKFEDL 162

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    +S         A +   L K       +   FG+ I  V +I
Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDAPVKTQFGWHIIRVDDI 222

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +      F +VK  IA Q+   K  
Sbjct: 223 RDIAPPPFDQVKAQIAQQLVQQKLQ 247



 Score = 43.8 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G  F D+ K       +      +D ++ K +  +  +        
Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P++    + + +V + +       D+  + + Q + +  L +    L+ Q  + 
Sbjct: 202 QMTDAPVKTQFGWHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260



 Score = 38.4 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 37/123 (30%), Gaps = 10/123 (8%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           ++  K L   +  G   ++++++        P     G D+   +  A     +      
Sbjct: 143 EQQAKDLIAKIKGGAKFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAQ 196

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSS 501
                   D  V    G +  +++ +         ++V   + +     K     E +  
Sbjct: 197 KLQKGQMTDAPVKTQFG-WHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQ 255

Query: 502 KAN 504
           +A 
Sbjct: 256 QAK 258


>gi|296127129|ref|YP_003634381.1| hypothetical protein Bmur_2107 [Brachyspira murdochii DSM 12563]
 gi|296018945|gb|ADG72182.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563]
          Length = 484

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 67/486 (13%), Positives = 156/486 (32%), Gaps = 75/486 (15%)

Query: 8   ASRTWVAKIF--LV------VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV---PFSSF 56
             ++ V K    L       +L V FL+            + T+ SV    +     S +
Sbjct: 10  KKKSPVVKTLQWLGVSAVSILLIVYFLVV----DTRGSQKTPTIGSVNGTPIYYTSTSPY 65

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             ++K ++    Q +G  +N+E  +   ++       VS   L+       +      + 
Sbjct: 66  GRAFK-QIEAYYQSLGIQINNEMYQY--IEDLAFRRAVSTILLNDVARK-NINVSDNFIV 121

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEK-EYIDHYTKMLSRTDVVGMFVGGMRPS 175
             +     F   +  ++   + S +      EK        + +    +       ++ +
Sbjct: 122 EAMKS--EFIDTNGVYNEMAYESFIKNSTQAEKLRIEKDLRESILSQTISSELFTSIKIN 179

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +L + +  +  F  R ++ + ++   +    + +   L ++F   K N+           
Sbjct: 180 SLDIQKEYKREFTKRDIEMVYIDAAAIVQSNEIAVNDLEKYFTDNKTNFV---------- 229

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                                               +  ++  +   AD  +++LK    
Sbjct: 230 ---------------------------------QADISWIMLESGGVADNLYKTLKDDIT 256

Query: 296 -FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            F + A E+G + ++  LG  +K  +P    A+ IFS  K       I+ +  Y I  V+
Sbjct: 257 LFEKSALEKGLNTNNYKLGYITKMQMPSDDFANKIFSDNKGQKLLEPIYANGYYYIVLVN 316

Query: 355 NIKPSFTVSFQEVKKD-IANQMRITKASEKVK-EDYKRLEEFLALGTSMDEISRREKIVS 412
           +I+      + +V ++ + N+      +  ++ E  K+ E   A   +++ + R      
Sbjct: 317 DIRIPE--KYTDVNQNVLKNEYLNANINTLLEAEKTKQAEVLKAAAANINNLQRLNGNGY 374

Query: 413 IDL-----PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
           I       P     G+              +  +         +    + L +G  +   
Sbjct: 375 IRYYRPSQPFSYNQGRLSTVDGTIIPDSSTEAFYNHVFSLQTNTVSDVIKLDNGVAVIKL 434

Query: 468 IKESIP 473
           I E  P
Sbjct: 435 ISEEKP 440


>gi|254459474|ref|ZP_05072890.1| ppic-type ppiase domain protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206676063|gb|EDZ40550.1| ppic-type ppiase domain protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 281

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 67/190 (35%), Gaps = 12/190 (6%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK-------IEISNDELQAEYEKNKE 262
           + V+ Q     +     P+  R++           +         ++ D + A YEK   
Sbjct: 69  DQVIQQTILAAQAGGDTPDRVRLALENERRALMAAEHMDVVLADAVTEDAVAAAYEKTYA 128

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEY 319
                       ++   + EA      L  G  F +LA+E+    S     +LG F    
Sbjct: 129 GAVPEREFDASHILVETEDEAKALVTDLDGGADFAELAKEKSTGPSGPRGGALGWFGTGQ 188

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           +      +++  + + G  +  I   FG+ +  +++ +        +V+ D+  Q+R+  
Sbjct: 189 MV-PEFENAVKDM-EVGAVSTPIKTQFGWHVIKLNDTRSEDAPKIDDVRADLEQQVRMET 246

Query: 380 ASEKVKEDYK 389
               + +  +
Sbjct: 247 VDAYIAKLTE 256


>gi|157414878|ref|YP_001482134.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385842|gb|ABV52157.1| cell binding factor2 (major antigen PEB4A) [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|307747515|gb|ADN90785.1| Cell-binding factor 2 [Campylobacter jejuni subsp. jejuni M1]
          Length = 273

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293
            +    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK        
Sbjct: 104 EKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGSKGKELD 163

Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
            KF +LA+E+            LG F +  +      D+ F+L      T  +  +FGY 
Sbjct: 164 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 222

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +    N +    + F EVK+ I N ++  +  + + +  + L
Sbjct: 223 VILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDL 264


>gi|149182999|ref|ZP_01861454.1| post-translocation molecular chaperone [Bacillus sp. SG-1]
 gi|148849283|gb|EDL63478.1| post-translocation molecular chaperone [Bacillus sp. SG-1]
          Length = 324

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 99/267 (37%), Gaps = 21/267 (7%)

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           +  +    +    +    D   +    V    + +   L   F+ +   Y   E     Y
Sbjct: 55  TPQMEQALQELVLKKVLGDKYEVTEEEVDEKLNEAKDQLGPQFDMFLSQYNLNEESFREY 114

Query: 235 I---LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +   L         IE+S DELQ  Y+  K +        V  ++  +++ A E  Q L 
Sbjct: 115 LELQLLQEKAATADIEVSEDELQEYYDNWKPEI------EVRHILVDDEETAKEVKQKLA 168

Query: 292 KGKKFIQLAEEQGKSLSDISLG------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            G KF  LA+E          G       +          ++++  L K G  +  +   
Sbjct: 169 DGAKFEDLAKEYSNDPGSAENGGSLGWVDYEGRQNFVPEFSEALEKL-KTGKVSEPVKTQ 227

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-EKVKEDYKRLEEFLALGTSMDEI 404
           +G+ I  V++ K     SF E+K ++   ++++K + EK+++  K + E   L    +++
Sbjct: 228 YGFHIIEVTDKKEKN--SFDEMKDELEKSLKLSKVTPEKIQQAMKEIVEDAGLEIKDEDL 285

Query: 405 SRREK--IVSIDLPLVDFAGKDVKGKE 429
               +  +   + P V   G+     E
Sbjct: 286 ENSFEQILNPPETPAVPEEGETPAPSE 312


>gi|331011659|gb|EGH91715.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 440

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 31  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++  +  +   + +
Sbjct: 86  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141

Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V                 + L  DQ K    E   +  I++      +      A 
Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + + +  
Sbjct: 202 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 261

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            ++ A++ +  ++
Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 321

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F +LA+    + G +L+   L       +        + +   +G+ +     ++G
Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWIDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 379

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + ++  A N +R  K  E+++   +++ +   +   +   ++
Sbjct: 380 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437

Query: 407 REK 409
             +
Sbjct: 438 AAQ 440


>gi|327438758|dbj|BAK15123.1| parvulin-like peptidyl-prolyl isomerase [Solibacillus silvestris
           StLB046]
          Length = 282

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 98/265 (36%), Gaps = 45/265 (16%)

Query: 146 INEKEYIDHYTK----MLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           I ++E+ +         L +  VV   +    + ++  +++  +   E     Y      
Sbjct: 35  ITQEEFYNSMKDIAGDQLLQQVVVEQILNDKYKVTDEEIEEELKGVKEQYGESY-----E 89

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
            V A ++ +   L                  I + L      +  +E++++E++  Y + 
Sbjct: 90  AVLAQSNLTEETLKT---------------NIRFTLLQEKALKD-VEVTDEEIEKYYNQA 133

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFS 316
            ++           ++  +++ A E    L  G+ F +LA+E             LG F+
Sbjct: 134 SQELN------ARHILVEDEETAKEIKAKLDAGEDFAKLAKEFSTDPGSGAQGGDLGWFT 187

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQM 375
              +      D+ ++L +  + +  +    G+ I  V+  +        ++ K++I   +
Sbjct: 188 VGTMV-PEFNDAAYAL-EIDEISEPVQSEHGFHIIQVTEKRDVKDYGKLEDKKEEIRESI 245

Query: 376 RITKA------SEKVKEDYKRLEEF 394
             TKA      +E +KE   ++++ 
Sbjct: 246 AATKADWNTKMAELIKEADVKVKDK 270


>gi|319901400|ref|YP_004161128.1| peptidyl-prolyl cis-trans isomerase [Bacteroides helcogenes P
           36-108]
 gi|319416431|gb|ADV43542.1| peptidyl-prolyl cis-trans isomerase [Bacteroides helcogenes P
           36-108]
          Length = 712

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 87/721 (12%), Positives = 210/721 (29%), Gaps = 124/721 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     S  V  V  + V    +    +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETVSAQDYQTMVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   ++    G    S+  ++  +  ++    V    +++  + +GL      +   I  
Sbjct: 61  EYTEVVKFSSGVSALSDE-QTNQIKDEVWRRYVENKLVEKEAKKLGLTVSKAELQAIIDA 119

Query: 120 -----ARSPLFHGK-DNKFS---------------------------------------- 133
                 +   F       F                                         
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQMPSQYAEYYDSMYKFWSFIEKS 179

Query: 134 ------HDVFVSRLAREGIN-EKEYIDHYTKMLSRTDVV-------GMFVGGMRPSNLLL 179
                  + + + + +   +   E  D +   ++++D++        +    +  +   L
Sbjct: 180 LVQARLQEKYQALITKSLFSNPVEAQDAFDARVNQSDLLLTAIPYSSIVDSTITVTEGEL 239

Query: 180 DQAKRFYFEN--RSVDYIVLNNRHVPAIADPSN-AVLTQWFEKY-------KDNYRA--- 226
             A     E   + V+   +    V   A P + A + +  E+Y         +Y     
Sbjct: 240 KAAYDKKKEQFRQYVEARNIKFIDVQVTASPEDKAAIQKEMEEYTTQLAGTPSDYTTFVR 299

Query: 227 -----PEYKRISYILFD-VHEKEKKIE-------------ISNDELQAEYEKNKEKYFSP 267
                  Y  + Y       +   +++             ++++ + +   K        
Sbjct: 300 STGSTVPYVDLYYTSKSLPADIAARLDSVSVGGVYGPYYNVTDNTINSF--KKLASVTMA 357

Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEY 319
           +     Q+    +        AD  + ++K G  F  +A++ G++   + IS  ++    
Sbjct: 358 DSIEFRQIQVTAEDAGKTKSLADSIYNAIKGGANFADVAKKYGQTGEPTWISSANYEGAQ 417

Query: 320 IPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
           I   +L    +I +L +       +  +   VI  V++ K +       V   I   +  
Sbjct: 418 IDGDNLKYITAITTLGQNELMNLPLGQAN--VILQVTDKKANKDKYKVAV---IKRPVEF 472

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
           +K  E   + Y    +F+A   +++++    +     L  +D          +  +   +
Sbjct: 473 SK--ETYSKAYNDFSQFIAANNTLEKMVANAEDAGYRL--LDKTDLYSSEHGIGGVKGTK 528

Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
             L   F                   + V +   +P   R L  V   +K +    K AE
Sbjct: 529 DALKWAFEAKAGEVSGLYECGESDRMLVVGVASIVPEGYRPLALVKDQLKFEIIRDKKAE 588

Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
           ++ +           + KN       +  S+                    +S   +   
Sbjct: 589 KIMADMKAANATSFDQYKNM---ANAVSDSVKHVTFAASAYVPALRTSEPLVSAYAAMAD 645

Query: 558 EMVKCFPIENGLSYVVFK-VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
                 PI+      V +     K+     ++   + L  M  + +    ++ L  +  V
Sbjct: 646 LNKLSAPIKGNGGVFVLQPYAKEKLNETFNRETEETTLANMHAR-MASQFMSDLYLKADV 704

Query: 617 T 617
            
Sbjct: 705 K 705


>gi|169824179|ref|YP_001691790.1| putative peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC
           29328]
 gi|302380852|ref|ZP_07269315.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|167830984|dbj|BAG07900.1| putative peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC
           29328]
 gi|302311347|gb|EFK93365.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3]
          Length = 321

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/380 (15%), Positives = 134/380 (35%), Gaps = 79/380 (20%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
            + + +  ++  ++      +G+  V  +G++ +         +       Q I F  N+
Sbjct: 4   FLAIVLAMMMVMVTACSNKPNGA--VAKIGKEYIYQKDVDKVMEDYKQYYGQDI-FNPNT 60

Query: 78  ERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
           E+ +     +  KI+D L++    ++ ++D  +E     V  E+ +      +      D
Sbjct: 61  EQGKEALKQIKPKIIDMLINEKIANKLMKDKKIEVSDKEVQAEVDK---LQKQLGG--AD 115

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
            F  +L +E + E+   +   K L    +   F                           
Sbjct: 116 KFKEQLKKENMTEQALKEQIEKQLKNKKLSQQF--------------------------- 148

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE-KKIEISNDELQ 254
                       PS+  +   F+K  D Y         +ILF   + + K ++ S  + +
Sbjct: 149 -------EKDFKPSDKEIKDEFDKNIDTYT---QYNADHILFSGKDAKGKNLDASKLKAK 198

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
           +                         + AD+ ++ +K GK F ++A+ + +  S      
Sbjct: 199 S-------------------------ELADKTYEEVKNGKNFNEVAKAKSEDPSAKQNSG 233

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +     +D++  + K G+ +  +   FGY I  +++            K++
Sbjct: 234 KLGDFLSSTMVK-EFSDALKKM-KPGEVSKPVKTEFGYHIIKLNSKVTELDKMTDANKQN 291

Query: 371 IANQMRITKASEKVKEDYKR 390
           I   +      EKV++++++
Sbjct: 292 IKTAISNKIIQEKVQKEFEK 311


>gi|56963292|ref|YP_175023.1| protein export protein PrsA [Bacillus clausii KSM-K16]
 gi|56909535|dbj|BAD64062.1| protein export protein PrsA [Bacillus clausii KSM-K16]
          Length = 345

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 105/269 (39%), Gaps = 34/269 (12%)

Query: 209 SNAVLTQWF----------EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
           S+  L  +F          ++ K+    PE       +       + ++ S++ LQ  +E
Sbjct: 94  SDEDLVNFFTNSGYPLDNIDQLKEELIVPE-------IAMKQLSAEGVDTSDETLQTYFE 146

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGS 314
           +N+E++   E  T   ++  +++ A+E    L  G+ F +LAEE         +   LG+
Sbjct: 147 ENQEQF---EQITARHILVEDEETANEVKDRLNDGEDFAELAEEYSTDTQSAANGGDLGT 203

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
           F +E +     ++  FSL    D +  +   FG+ I  V++       +F++ +  + +Q
Sbjct: 204 FDREQMV-PEFSEVAFSL-DVNDISDPVESQFGFHIIEVTDKLD----TFEDNRDFVYDQ 257

Query: 375 MRITKASE---KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
           +   +  +    + E   +    +      D I  +      +  + +       G+E A
Sbjct: 258 IISEQGKDFTTVLGELIDKYNVKIND-EEFDAIVTQYTTPIEEPAVEEEPADGENGEEPA 316

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
                E+       + D  +++++    +
Sbjct: 317 DEENTEEDESAEDTEADTSNENNSEDTEE 345


>gi|207723563|ref|YP_002253962.1| isomerase rotamase protein [Ralstonia solanacearum MolK2]
 gi|207743079|ref|YP_002259471.1| isomerase rotamase protein [Ralstonia solanacearum IPO1609]
 gi|206588764|emb|CAQ35727.1| isomerase rotamase protein [Ralstonia solanacearum MolK2]
 gi|206594476|emb|CAQ61403.1| isomerase rotamase protein [Ralstonia solanacearum IPO1609]
          Length = 243

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 5/160 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K    + DEL  +YEK K ++ + +      ++   + +A      LK G  F ++
Sbjct: 80  EDYVKNSPTTEDELHKQYEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEEI 139

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFT-PVIHGSFGYVIAHVSNI 356
           A+ Q K     + G       P   + +  +  +  KKG+ T   +   FG+ +  + + 
Sbjct: 140 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEITLTPVKTQFGWHVIRLDDT 199

Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394
           + +   +F++VK  +   M   +     K +   K L E 
Sbjct: 200 RDAKIPAFEDVKPQLLEMMMGDQNWQRAKFQAMLKDLREK 239


>gi|89094171|ref|ZP_01167114.1| peptidyl-prolyl cis-trans isomerase SurA [Oceanospirillum sp.
           MED92]
 gi|89081646|gb|EAR60875.1| peptidyl-prolyl cis-trans isomerase SurA [Oceanospirillum sp.
           MED92]
          Length = 430

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 114/402 (28%), Gaps = 62/402 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    +  S            +  +    +  E      L K++L+ L+  +  
Sbjct: 31  DRIAAVVNEGIILQSELEQRTSITREQLQSR-NTRIPPEHI----LRKQVLNRLIIESIQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+     ++ G IA         N  S D F   L  EG +  +  +     +
Sbjct: 86  KQMAEQNGVRVSDSQLNGAIANIAA----QNGLSIDQFREALIAEGRDYNQAREQIRNEM 141

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD--------YIVLNNRHVPAIADPSN 210
               V    V   +R S   L                       I   ++  P I   + 
Sbjct: 142 LINSVQQNLVNRRIRVSEQELSNFLNSEDGKSQASAEFLLGHILIATPSQASPEIIQQAE 201

Query: 211 AVLTQWFEK--YKDNY-------------------------RAPEYKRISYILFDVHEKE 243
           +   + F+K     ++                           PE    +       E  
Sbjct: 202 SKAKEIFDKLNNGADFAETAVEFSNAPNALKGGDLGWRKANELPEALSKAVRKLSPGEFS 261

Query: 244 KKI-EISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
           K +   S   +    +K        + R V  ++            +++  + +Q +  G
Sbjct: 262 KPVRSPSGFHILLAKDKRGGAVQLIDQRLVSHILLKPTEIRTNEQAKRQISQLYQRIASG 321

Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           + F  LA+E     +  S G    +++           + S A  G  +      FG+ I
Sbjct: 322 EDFAALAKEFSDDPASGSEGGSLGWTQNGQMVPEFEQVMNSTA-VGQVSEPFESRFGWHI 380

Query: 351 AHVSN-IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             V +        + QE +      +R  K +E++    + +
Sbjct: 381 LTVLDTRTEDMGETMQENRA--RATIRKRKFNEELSNWLREI 420


>gi|320326011|gb|EFW82069.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|330985794|gb|EGH83897.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 440

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 31  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++  +  +   + +
Sbjct: 86  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141

Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V                 + L  DQ K    E   +  I++      +      A 
Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + + +  
Sbjct: 202 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 261

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            ++ A++ +  ++
Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 321

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F +LA+    + G +L+   L       +        + +   +G+ +     ++G
Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 379

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + ++  A N +R  K  E+++   +++ +   +   +   ++
Sbjct: 380 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437

Query: 407 REK 409
             +
Sbjct: 438 AAQ 440


>gi|42780354|ref|NP_977601.1| peptidylprolyl isomerase [Bacillus cereus ATCC 10987]
 gi|42736273|gb|AAS40209.1| protein export protein prsA [Bacillus cereus ATCC 10987]
          Length = 285

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 83/198 (41%), Gaps = 14/198 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249
           Y ++    +      S+  + +  +K K+ Y    +    +  L D  + + +I+     
Sbjct: 57  YEMMAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLAM 116

Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           N+ ++    EK+ + ++ PEI+    ++  ++ EA E  + L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L K G  +  +    GY I  +++ K      +
Sbjct: 176 SKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVASPNGYHIIKLTDKKA--LKPY 231

Query: 365 QEVKKDIANQMRITKASE 382
            EVK  I   +   + S+
Sbjct: 232 DEVKDSIRKNLEEERISD 249



 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+     P  E   +++          + VA P+G Y  +++ +      +  +EV   
Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVASPNG-YHIIKLTDKK--ALKPYDEVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  + ++
Sbjct: 238 IRKNLEEERISD 249


>gi|90420209|ref|ZP_01228117.1| peptidyl-prolyl cis-trans isomerase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335543|gb|EAS49293.1| peptidyl-prolyl cis-trans isomerase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 320

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 173 RPSNLLLDQAKRFYFENRSVDY------IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
             +  + +Q  R   + R +        I +  R   A A   +  +       + ++  
Sbjct: 72  AAAAEVGEQFARLPADQRKLAVLSALIDIKVLARQAEAEALQDDPEVAA-----QIDFLR 126

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
                 +Y   +         I+ +EL+A +EK      + E      ++   ++EA+  
Sbjct: 127 ERTLHNAYFARNG-----VANITEEELKARFEKEVAAMPATEEVHARHILLKTKEEAEAV 181

Query: 287 FQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
              L  G  F++LA+E     S      LG FS   +         F++         + 
Sbjct: 182 IAKLDGGADFVELAKESSTGPSGPEGGDLGFFSAGQMV-PEFEKVAFTMEPGTYTKEPVQ 240

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             FG+ +  V   + +    F  VK  +   +   K    V++    L
Sbjct: 241 TQFGWHVIKVEEKREAPKPEFDAVKDQVRQVVLREKYMGLVQKARDDL 288


>gi|329769980|ref|ZP_08261377.1| hypothetical protein HMPREF0433_01141 [Gemella sanguinis M325]
 gi|328837540|gb|EGF87167.1| hypothetical protein HMPREF0433_01141 [Gemella sanguinis M325]
          Length = 311

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 98/325 (30%), Gaps = 87/325 (26%)

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
           E   +  L K     ++    LD++   I  +    ++            +      D F
Sbjct: 45  ESIGANQLSKAATSMMIQKVLLDKYKNKINEKVIDEQLNKA-------QEQYGG--KDKF 95

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
              L ++G    +Y D      ++T ++  + G                           
Sbjct: 96  EQILKQKGFTLDQYKDGLKVKAAQTIMINEYAG--------------------------- 128

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                      +   L + +EK K  Y       +++IL  V        +S++E     
Sbjct: 129 ----------ITEDKLKESYEKNKHQY------HLAHILISVKSSSNPNGLSDEE----- 167

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLG 313
                                 +K+A+E  + +K G  F  LA+E             LG
Sbjct: 168 ---------------------AKKKAEEVLKKIKDGGDFATLAKEYSNDTGNASNGGDLG 206

Query: 314 SFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
             SKE         ++ ++L K    + V+   FGY I  V + K S   S+ E+K  + 
Sbjct: 207 WSSKEDNSYVSEFNNAAYALNKD-QVSDVVKTPFGYHIIKVLDTKDS---SYDELKTSLE 262

Query: 373 NQMRITKASEKVKEDYKRLEEFLAL 397
            +              K L++    
Sbjct: 263 EKAAEQAVKNDSTIVSKALKKLFEE 287


>gi|299136387|ref|ZP_07029570.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX8]
 gi|298600902|gb|EFI57057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX8]
          Length = 635

 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 110/357 (30%), Gaps = 75/357 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  V  Q +  S ++ S          +     ++  A      + +L +++    L
Sbjct: 77  EDVIARVNDQIITRSEYLRS-----EQQLLQEAQQQSASPADFESRRRDLLRDMIDEQLL 131

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +++G+          I        +++  S +      +++G++ +++        
Sbjct: 132 LSKGKELGIT-GDAE---TIRELDEIRKRNHLDSMEALEKAASQQGVSFEDFKQGIRNNA 187

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  VV                                    V    + ++A    ++  
Sbjct: 188 IRQQVVQ---------------------------------EEVSRHLNMTHAQEDAYYAA 214

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +  ++  PE   +S IL    +     +++                              
Sbjct: 215 HGKDFEVPEQIHLSEILVTTPDNATDAQVA----------------------------AA 246

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           Q +AD+    LK G  F  LA+       + +   LG F +  + DV L ++ F L + G
Sbjct: 247 QAKADDLEAKLKAGTSFADLAKSSSGGPTAAAGGDLGDFKRGSLGDV-LENATFPLPEGG 305

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            FT  I    G+VI  V   + +      +++  +   + +      ++    +  +
Sbjct: 306 -FTAPIRTRQGFVILRVDKHQAAGIPPLADIEPQVQQAIYLDALQPALRAYLTKARQ 361



 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 5/117 (4%)

Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
           +    K G +F D+ K+           +  D +    G    +  F  P       PI 
Sbjct: 253 LEAKLKAGTSFADLAKSSSGGPTAAAGGDLGDFKRGSLGDVLENATFPLPEGGF-TAPIR 311

Query: 567 NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVH 619
               +V+ +V   +   +         + Q +  D L     + +   +    + + 
Sbjct: 312 TRQGFVILRVDKHQAAGIPPLADIEPQVQQAIYLDALQPALRAYLTKARQDAYMDID 368


>gi|290894110|ref|ZP_06557083.1| rotamase [Listeria monocytogenes FSL J2-071]
 gi|290556365|gb|EFD89906.1| rotamase [Listeria monocytogenes FSL J2-071]
          Length = 295

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 91/258 (35%), Gaps = 27/258 (10%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224
                 +   L +A +  + N  V  +    + +      +   +   ++KY++ Y    
Sbjct: 30  TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSF 88

Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                     +    + + Y L      E  + +S  +L+  Y+  +          V  
Sbjct: 89  ESTLSSNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDIT------VRH 142

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331
           ++  ++  A E    LK G+KF  LA+E     +  + G     + P   D +   + ++
Sbjct: 143 ILVDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYA 202

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDY 388
           L  K D + ++  ++GY +  +       T + ++       I +Q+     +  +K++ 
Sbjct: 203 LENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIESQLTTENMTAALKKEL 262

Query: 389 KRLEEFLALGTSMDEISR 406
           K     +      D  + 
Sbjct: 263 KAANIDIKDSDLKDAFAD 280


>gi|283954124|ref|ZP_06371649.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           414]
 gi|283794403|gb|EFC33147.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           414]
          Length = 273

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 21/243 (8%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVLTQWFEKY--K 221
             V G   S+  + +   F    R  D+  L +    A+       + +L    ++   K
Sbjct: 25  ATVNGKSISDAEVSEF--FASMLRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEK 82

Query: 222 DNYRAPEYKRISYILFD---VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           D     E  R    +       +    I+I   +++A Y++NK+KY  P     + ++  
Sbjct: 83  DPLYTKELDRAKDAILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVA 142

Query: 279 NQKEADEAFQSLKK------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADS 328
            +KEA +    LK         KF +LA+E+            LG F +  +      D+
Sbjct: 143 TEKEAKDIINELKGLKGKELDAKFSKLAKEKSIDPGSKNQGGELGWFDESTMVKP-FTDA 201

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
            F+L      T  +  +FGY +    N +    + F EVK+ I N ++  +  + + +  
Sbjct: 202 AFALKNGTITTTPVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKG 261

Query: 389 KRL 391
           + L
Sbjct: 262 QDL 264


>gi|225163766|ref|ZP_03726066.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
 gi|224801636|gb|EEG19932.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
          Length = 568

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 71/575 (12%), Positives = 162/575 (28%), Gaps = 80/575 (13%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+  I+   +     +FL +L V      +   +F    +S +V     KV    F    
Sbjct: 1   MISWIQNTFQKHFKWLFLTLLVVV-----IIGFVFVTGSTSNIVGGRGHKVARRDFFGIN 55

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE-------ADHG 113
                   +  G    S   R   +  +I +  +    L ++   I L            
Sbjct: 56  LNSKDGQERVFGDASLSVTLRYGYI--QISEEQLQPFALSRWAS-IHLADTIKLPAPTTD 112

Query: 114 RVWGEIARSPLFHGKDNKFSHDVF----VSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
            +   I    LF      F    +             +E +        +    V  +  
Sbjct: 113 EIIEHIRSLGLFRNAQGAFDPKRYSDFRDQLKTNPRTSEADVDRVIVDDIRVEKVQKLLA 172

Query: 170 G-GMRPSNLLLDQAKRFYFENR-SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
           G G      +++Q  +   E R ++D   ++              L ++FE     Y+ P
Sbjct: 173 GPGYTLPADVIEQLSQL--ETRWTLDVASVDYASFSPAVKVGEDTLKKYFEDNALRYQIP 230

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR----------------- 270
              +I YI F    +  +  +++DE +  Y  N  + F P  +                 
Sbjct: 231 AKVQIRYIDFPTSARLAETSVTDDEAREYYLANTHRSFKPADKTKTPDLLPKTTPATSAE 290

Query: 271 ---------TVEQLVFPNQKEADEAFQSLKKG------------KKFIQLAEEQGKSLSD 309
                      + +    +++A                      K      ++   +L D
Sbjct: 291 DKNADFDAVKTQVIQTLREQKAQRLTAKAAADISLALFNQKVALKDLPAFVKDNNLTLKD 350

Query: 310 ISLGSFSKEYIPD-----VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           ++   F  + +P       ++AD +  L     ++  I    G  I        +    +
Sbjct: 351 VA--PFPPQNVPGIFGASPTIADEVAKLTADLPYSDAITTPTGAAILVWEADIAARQPDY 408

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-------GTSMDEISRREKIVSIDLPL 417
            EV   +    +  +  +   E  + L   +         G +  +              
Sbjct: 409 TEVAPRVTADYQADQKRKLFAEAGRTLHAAIETALKQQKPGVTFADAVATAAKAQHLTAK 468

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA--- 474
           VD      +      IP     L  +         +  ++      +   +++ +P    
Sbjct: 469 VDTYKDFTRMSPPKDIPG--AALQPLNSLSKGQVGEMILSADQKGILVYVVEKKLPEVTS 526

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
            + +  E+  ++ +   +    E++ +     + +
Sbjct: 527 ANPRYAELTNEIAEFNASRSGGEQIQALMEAELAQ 561



 Score = 37.3 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 45/157 (28%), Gaps = 9/157 (5%)

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG---KNFRDIGKNLGASLLTTNQIN 535
            + V T V +  +  K     +  A  + L    +    K+     K+   +L       
Sbjct: 296 FDAVKTQVIQTLREQKAQRLTAKAAADISLALFNQKVALKDLPAFVKDNNLTLKDVAPFP 355

Query: 536 RMDNENKFFGYDGIS-QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
             +    F     I+ +V     ++     I       +          +  +    + +
Sbjct: 356 PQNVPGIFGASPTIADEVAKLTADLPYSDAITTPTGAAIL----VWEADIAARQPDYTEV 411

Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
              +  D        L ++   T+H   I+  L  +K
Sbjct: 412 APRVTADYQADQKRKLFAEAGRTLH-AAIETALKQQK 447


>gi|296501860|ref|YP_003663560.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
 gi|296322912|gb|ADH05840.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
          Length = 285

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249
           Y ++    +       +  + +  EK K  Y    +    +Y L D  + + +I+     
Sbjct: 57  YEMMAQDIITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116

Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           N+ ++    EK+ + ++ PEI+    ++  ++ EA E    L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L   G  +  +  S GY +  +++ K      +
Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231

Query: 365 QEVKKDIANQMRITKASEKVKED 387
            EVK  I   +   + ++ V   
Sbjct: 232 DEVKNSIRKNLEEERTADPVFSK 254



 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  +TA+ V SK  +L+ E  K+
Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263


>gi|229056773|ref|ZP_04196175.1| Foldase protein prsA 1 [Bacillus cereus AH603]
 gi|228720567|gb|EEL72131.1| Foldase protein prsA 1 [Bacillus cereus AH603]
          Length = 244

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 78/208 (37%), Gaps = 17/208 (8%)

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK-YKDNYRAPEYKRISYILFD 238
                   E   +    ++++ V    D     +   F+   K      E  +       
Sbjct: 8   QVLNNMVMEKVLIKNYKVDDKEVDKKFDEMKKQVGDQFDTLMKQQGLKEETVKNGVRASL 67

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
             E+  +  I++ EL+  Y+                ++  ++  A +  + L +GK F +
Sbjct: 68  AQEQAIEKTITDKELKDNYK---------PQVKASHILVKDEATAKKVKEELGQGKSFEE 118

Query: 299 LAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA++  +  +       LG F    +      D+ + L KK + +  +   FGY I  V+
Sbjct: 119 LAKQYSEDTASKEKGGDLGFFEHGKMVK-EFEDAAYKL-KKDEVSEPVKTQFGYHIIKVT 176

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE 382
           +IK     SF++ K D+  ++   KA +
Sbjct: 177 DIKEPE-KSFEQSKADLKKELVAKKAQD 203


>gi|225027756|ref|ZP_03716948.1| hypothetical protein EUBHAL_02015 [Eubacterium hallii DSM 3353]
 gi|224954902|gb|EEG36111.1| hypothetical protein EUBHAL_02015 [Eubacterium hallii DSM 3353]
          Length = 248

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 6/155 (3%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEE 302
           K I+ + +E +A Y ++K  +      T + ++   ++E+ +  + ++ G K F   A+E
Sbjct: 90  KDIQATQEECEAYYNEHKAMFVKEAKATAKHILTATEEESKKVLEEIESGVKTFEDAAKE 149

Query: 303 QGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
                S     SLG+F +  +      +++F+ A+ G     +   FGY +  V  +   
Sbjct: 150 YSTCPSKAQGGSLGTFGRGQMVK-EFDEAVFT-AEVGKVIGPVKTDFGYHLIRVDELTGG 207

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
               F EV   I  Q+   K ++K     + + E 
Sbjct: 208 EQSEFAEVYPQIMQQLTTEKQNKKYMAVRQEMIEK 242


>gi|196036230|ref|ZP_03103629.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus W]
 gi|218902361|ref|YP_002450195.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH820]
 gi|228926303|ref|ZP_04089377.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228944873|ref|ZP_04107236.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|195991205|gb|EDX55174.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus W]
 gi|218539904|gb|ACK92302.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH820]
 gi|228814901|gb|EEM61159.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228833400|gb|EEM78963.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 285

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 30/206 (14%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240
           Y ++    +      S+  + +  +K K  Y             +     +         
Sbjct: 57  YEMIAQDVITKKYKVSDDDVEKEVQKAKSQYGDQFKNVLKNNGLKDEADFKNQIKFKLSM 116

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
            K  K  ++  +++  Y+        PEI+    ++  ++ EA E  + L  G  F +LA
Sbjct: 117 NKAIKQSVTEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167

Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +++ + L        LG F    +       + + L K G  +  +    GY I  ++  
Sbjct: 168 KQESQDLLSKEKGGDLGYFHSGAMT-PEFETAAYKL-KIGQISDPVQSPNGYHIIKLTGK 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382
           K      + EVK  I   +   + ++
Sbjct: 226 KD--LKPYDEVKNSIRKNLEEERTAD 249


>gi|299136355|ref|ZP_07029539.1| SurA domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298602479|gb|EFI58633.1| SurA domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 350

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/380 (13%), Positives = 118/380 (31%), Gaps = 75/380 (19%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
                 V +V    +  +    ++  +L    Q+     ++++A S  L   IL  L+  
Sbjct: 25  GPQDGVVGTVNGHPILRTEVDKAYNAQLASNPQQ--TAPSADQADS--LRLNILHELIVE 80

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             ++Q      L A    V  ++A           ++ + F +RL    +   E      
Sbjct: 81  EIVEQRAAKQNLIATDSEVDAKLAEMKA------PYTEEQFQARLKTANLTLDELRRDIR 134

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
           + L++T +                                   + + +    ++  +  +
Sbjct: 135 RNLTQTKLFN---------------------------------KEIDSKITVTDGDVNNY 161

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           F  +KD++   E +              +I ++N   Q        K  + +        
Sbjct: 162 FNAHKDSFNLIENR----------YHLAQILVTNQPAQQSSNLQNSKATTDD-------- 203

Query: 277 FPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
              +K+       L  G  F  +A    E Q  + +   +G   +  +     A +    
Sbjct: 204 -EARKKIQALKNRLDTGDDFGTIASNFSENQDTAPNGGDVGFVPESQMKADPTAYAAIMK 262

Query: 333 AKKGDFTPVIHGSF-------GYVIAHVSNIKPSFTVSFQE--VKKDIANQMRITKASEK 383
            K G  T ++           GY I  + + +P+      +  V+++I  Q+  +++   
Sbjct: 263 LKAGQITDILPVLDGTTHKVAGYSIYKLISKEPAGQRDLNDPRVQQNIRQQLHESRSQLL 322

Query: 384 VKEDYKRLEEFLALGTSMDE 403
                + L +   +   + E
Sbjct: 323 KASYLEMLRDQAKVENYLAE 342


>gi|302338942|ref|YP_003804148.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301636127|gb|ADK81554.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 358

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/411 (14%), Positives = 133/411 (32%), Gaps = 93/411 (22%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQK---VPFSSFINSWKQELGMISQKIGF 73
            L V+ V F + G+   + +     TV +V   K   +           ++    +K G 
Sbjct: 12  LLGVVLVLFFLCGVVFPVSADLVGQTVATVTLTKTEGISSVQLDQRI-AQVAAARKKAGL 70

Query: 74  VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF--HGKDN 130
             +       G+D+ ++LD +++   + Q  E  G+     ++   +A+           
Sbjct: 71  SAD-------GVDRTEVLDAMIAEVLIKQAAERSGISIPQEQIQQVVAKQKASIEQQVGR 123

Query: 131 KFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
             +   +   +  + G + ++Y     + + +   +                      E 
Sbjct: 124 PLTDRQYQEVVRSQTGFSWEQYKGSIREQIMQQRYIA--------------------TEK 163

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           R +           AI  P+   +   ++ +  +   PEY R+             I ++
Sbjct: 164 RDM---------FEAIQPPTEKEIQDHYDAHATSITNPEYVRLK------QIFIPTISMN 208

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLS 308
           + E QA                        ++  + A+  L+ G  KF  L  +  +  S
Sbjct: 209 DQEKQA-----------------------ARERLESAWTKLRNGSAKFDDLVLQYSEDES 245

Query: 309 ----DISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
                  +G  ++     E          +FSL + GD++ VI  + G  I  V+  + +
Sbjct: 246 SKYRGGDVGYIARADQRVEKTYGADFFRKLFSL-QTGDYSGVIESNVGLHILKVTEHREA 304

Query: 360 FTVSFQE---------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
             +S  +         V++ I   +   K    +K+    + E L     +
Sbjct: 305 RILSLDDQIAPDNKMTVREYIRAGLFQEKQQAVLKKALDAVVEDLKAEAEI 355


>gi|222094890|ref|YP_002528950.1| peptidylprolyl isomerase [Bacillus cereus Q1]
 gi|221238948|gb|ACM11658.1| protein export protein prsA [Bacillus cereus Q1]
          Length = 285

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 83/198 (41%), Gaps = 14/198 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249
           Y ++    +      S+  + +  +K K+ Y    +    +  L D  + + +I+     
Sbjct: 57  YEMMAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLAM 116

Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           N+ ++    EK+ + ++ PEI+    ++  ++ EA E  + L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L K G  +  +    GY I  +++ K      +
Sbjct: 176 SKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVASPNGYHIIKLTDKKE--LKPY 231

Query: 365 QEVKKDIANQMRITKASE 382
            EVK  I   +   + S+
Sbjct: 232 DEVKDSIRKNLEEERISD 249



 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+     P  E   +++          + VA P+G Y  +++ +      +  +EV   
Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVASPNG-YHIIKLTDKKE--LKPYDEVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  + ++
Sbjct: 238 IRKNLEEERISD 249


>gi|241663100|ref|YP_002981460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12D]
 gi|240865127|gb|ACS62788.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12D]
          Length = 265

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 5/160 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K    + DEL  +Y+K K ++ + +      ++   + +A      LK G KF  +
Sbjct: 102 EDYVKNSPATEDELHKQYDKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGAKFEDI 161

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           A+ Q K     + G       P   + +  +  +  KKG  T   +   FG+ +  + + 
Sbjct: 162 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGQITQTPVKTQFGWHVIRLDDT 221

Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394
           + +   S+++VK  +   M   +     K +   K L E 
Sbjct: 222 RDAKIPSYEDVKPQLLEMMMGDQNWQRSKFQAMLKELREK 261


>gi|46907672|ref|YP_014061.1| protein export protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226224045|ref|YP_002758152.1| protein secretion PrsA (post-translocation molecular chaperone)
           [Listeria monocytogenes Clip81459]
 gi|254824497|ref|ZP_05229498.1| rotamase [Listeria monocytogenes FSL J1-194]
 gi|254852070|ref|ZP_05241418.1| rotamase [Listeria monocytogenes FSL R2-503]
 gi|254932629|ref|ZP_05265988.1| rotamase [Listeria monocytogenes HPB2262]
 gi|300765586|ref|ZP_07075565.1| protein export protein [Listeria monocytogenes FSL N1-017]
 gi|67461027|sp|Q71ZM6|PRSA1_LISMF RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|46880940|gb|AAT04238.1| protein export protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876507|emb|CAS05216.1| Putative protein secretion PrsA (post-translocation molecular
           chaperone) [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605367|gb|EEW17975.1| rotamase [Listeria monocytogenes FSL R2-503]
 gi|293584188|gb|EFF96220.1| rotamase [Listeria monocytogenes HPB2262]
 gi|293593735|gb|EFG01496.1| rotamase [Listeria monocytogenes FSL J1-194]
 gi|300513687|gb|EFK40755.1| protein export protein [Listeria monocytogenes FSL N1-017]
 gi|332311885|gb|EGJ24980.1| Foldase protein prsA 1 [Listeria monocytogenes str. Scott A]
          Length = 294

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 91/258 (35%), Gaps = 27/258 (10%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224
                 +   L +A +  + N  V  +    + +      +   +   ++KY++ Y    
Sbjct: 30  TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSF 88

Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                     +    + + Y L      E  + +S  +L+  Y+  +          V  
Sbjct: 89  ESTLSSNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDIT------VRH 142

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331
           ++  ++  A E    LK G+KF  LA+E     +  + G     + P   D +   + ++
Sbjct: 143 ILVDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYA 202

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDY 388
           L  K D + ++  ++GY +  +       T + ++       I +Q+     +  +K++ 
Sbjct: 203 LENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIESQLTTENMTAALKKEL 262

Query: 389 KRLEEFLALGTSMDEISR 406
           K     +      D  + 
Sbjct: 263 KAANIDIKDSDLKDAFAD 280


>gi|94266120|ref|ZP_01289835.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
           proteobacterium MLMS-1]
 gi|93453317|gb|EAT03757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
           proteobacterium MLMS-1]
          Length = 335

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 117/359 (32%), Gaps = 74/359 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +  S            + Q+     + E+A +    +++L  ++     
Sbjct: 38  DRVVAEVNGEIITMSELEREMAGVEQQVLQQAPAA-DREQALTEA-RQQVLSGMIDRLLA 95

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+      V   IA+       DN+ + +   + +AR   + + Y       +
Sbjct: 96  RQQADRLGIRVGEREVDEAIAQI----LADNRITMEELEAEIARHHGSMENYRRDLQTQI 151

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            ++ ++                                    V          + +++++
Sbjct: 152 LQSRLLSQ---------------------------------EVRERVVIPERRIKEYYQQ 178

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +     +PE    +Y +    +        +DE +                         
Sbjct: 179 HHQEQTSPEE---AYHIL---QIGFNWPPGDDEARE----------------------QA 210

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +++A+E  +  ++G  F +LA        + +D  LG F K+ +  + L        + G
Sbjct: 211 RRQAEEIHRQARQGADFRELARRYSDLPSARNDGDLGVFQKDELAGIMLEH--IPELEPG 268

Query: 337 DFTPVIHGSFGYVIAHVSNIKPS--FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           + + ++  + GY    + + +     T S++E+K  I  ++      E+  +  K L E
Sbjct: 269 EISTILETAAGYQFFKLLSNQGELRATGSYEELKGKIREKLYQQALEEQFSKWVKELRE 327


>gi|13472995|ref|NP_104562.1| cell binding factor 2 precursor [Mesorhizobium loti MAFF303099]
 gi|14023743|dbj|BAB50348.1| mll3467 [Mesorhizobium loti MAFF303099]
          Length = 303

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 5/137 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++++ E++A Y++               ++   ++EA+   + L  G  F +LA E    
Sbjct: 136 KVTDAEIRARYDQEIANTPPVNEVHARHILVKTKEEAEAIIKQLDGGGDFQKLANEHTSD 195

Query: 307 LS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
            S       LG F    +       + F+L         +   FG+ +  + + +     
Sbjct: 196 PSGKSNGGDLGWFGPGQMV-PEFDKAAFALEVGKYTEQPVQTQFGWHVIKLEDKRAKQPP 254

Query: 363 SFQEVKKDIANQMRITK 379
           +F +VK      +   K
Sbjct: 255 AFDDVKDQAKQAVIRDK 271



 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 44/129 (34%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
             +A  ++ +    G   +   ++       +N  +           +     F+  V  
Sbjct: 169 KEEAEAIIKQLDGGGDFQKLANEHTSDPSGKSNGGDLGWFGPGQMVPEFDKAAFALEVGK 228

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
               P++    + V K+ + +       D       Q + +D   +++  L++   V + 
Sbjct: 229 YTEQPVQTQFGWHVIKLEDKRAKQPPAFDDVKDQAKQAVIRDKYFALVKSLRAGAKVEIP 288

Query: 620 DNLIQRYLD 628
           D  +++ +D
Sbjct: 289 DAKLKQAVD 297


>gi|86153246|ref|ZP_01071450.1| foldase protein PrsA [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|121612905|ref|YP_001000297.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005249|ref|ZP_02271007.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|143955293|sp|A1VYV6|CBF2_CAMJJ RecName: Full=Cell-binding factor 2; AltName: Full=Major antigen
           peb4A; Flags: Precursor
 gi|85842972|gb|EAQ60183.1| foldase protein PrsA [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87250443|gb|EAQ73401.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 273

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293
            +    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK        
Sbjct: 104 EKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELD 163

Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
            KF +LA+E+            LG F +  +      D+ F+L      T  +  +FGY 
Sbjct: 164 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 222

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +    N +    + F EVK+ I N ++  +  + + +  + L
Sbjct: 223 VILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDL 264


>gi|16803484|ref|NP_464969.1| hypothetical protein lmo1444 [Listeria monocytogenes EGD-e]
 gi|47095395|ref|ZP_00233005.1| protein export protein [Listeria monocytogenes str. 1/2a F6854]
 gi|224499704|ref|ZP_03668053.1| hypothetical protein LmonF1_08419 [Listeria monocytogenes Finland
           1988]
 gi|224501615|ref|ZP_03669922.1| hypothetical protein LmonFR_03702 [Listeria monocytogenes FSL
           R2-561]
 gi|254827732|ref|ZP_05232419.1| rotamase [Listeria monocytogenes FSL N3-165]
 gi|254829797|ref|ZP_05234452.1| hypothetical protein Lmon1_00510 [Listeria monocytogenes 10403S]
 gi|254898390|ref|ZP_05258314.1| hypothetical protein LmonJ_01205 [Listeria monocytogenes J0161]
 gi|254912118|ref|ZP_05262130.1| protein export protein [Listeria monocytogenes J2818]
 gi|254936446|ref|ZP_05268143.1| rotamase [Listeria monocytogenes F6900]
 gi|284801831|ref|YP_003413696.1| hypothetical protein LM5578_1586 [Listeria monocytogenes 08-5578]
 gi|284994973|ref|YP_003416741.1| hypothetical protein LM5923_1538 [Listeria monocytogenes 08-5923]
 gi|46396979|sp|Q8Y759|PRSA1_LISMO RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|16410873|emb|CAC99522.1| lmo1444 [Listeria monocytogenes EGD-e]
 gi|47016216|gb|EAL07139.1| protein export protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258600111|gb|EEW13436.1| rotamase [Listeria monocytogenes FSL N3-165]
 gi|258609038|gb|EEW21646.1| rotamase [Listeria monocytogenes F6900]
 gi|284057393|gb|ADB68334.1| hypothetical protein LM5578_1586 [Listeria monocytogenes 08-5578]
 gi|284060440|gb|ADB71379.1| hypothetical protein LM5923_1538 [Listeria monocytogenes 08-5923]
 gi|293590088|gb|EFF98422.1| protein export protein [Listeria monocytogenes J2818]
          Length = 294

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 93/258 (36%), Gaps = 27/258 (10%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224
                 +   L +A +  + N  V  +    + +      +   +   ++KY++ Y    
Sbjct: 30  TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSF 88

Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                     +    + + Y L      E  +++S  +L+A Y+  +          V  
Sbjct: 89  ESTLSSNNLTKTSFKENLEYNLLVQKATEANMDVSESKLKAYYKTWEPDIT------VRH 142

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331
           ++  ++  A E    LK G+KF  LA+E     +  + G     + P   D +   + ++
Sbjct: 143 ILVDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYA 202

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDY 388
           L  K D + ++  ++GY +  +       T + ++       I +Q+     +  +K++ 
Sbjct: 203 LENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIKSQLTSENMTAALKKEL 262

Query: 389 KRLEEFLALGTSMDEISR 406
           K     +      D  + 
Sbjct: 263 KAANIDIKDSDLKDAFAD 280


>gi|228938382|ref|ZP_04100992.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228971261|ref|ZP_04131889.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977871|ref|ZP_04138252.1| Foldase protein prsA 2 [Bacillus thuringiensis Bt407]
 gi|228781788|gb|EEM29985.1| Foldase protein prsA 2 [Bacillus thuringiensis Bt407]
 gi|228788411|gb|EEM36362.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821244|gb|EEM67259.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326938890|gb|AEA14786.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 285

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 80/198 (40%), Gaps = 14/198 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248
           Y ++    +       +  + +  EK K  Y     +  E  R+       ++ + K+ +
Sbjct: 57  YEMMAQDVITKKYKVPDEEVNKEIEKVKKQYGDQFKKVLENNRLKDEEDFKNQIKFKLAM 116

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           +    ++  EK+ + ++ PEI+    ++  ++ EA E    L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L   G  +  +  S GY +  +++ K      +
Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231

Query: 365 QEVKKDIANQMRITKASE 382
            EVK  I   +   + ++
Sbjct: 232 DEVKNSIRKNLEEERTAD 249



 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 55/148 (37%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  +TA+   S   +L+ E  K+
Sbjct: 238 IRKNLEEERTADPAFS--QKLLQEELKK 263


>gi|88797590|ref|ZP_01113179.1| Parvulin-like peptidyl-prolyl isomerase [Reinekea sp. MED297]
 gi|88779762|gb|EAR10948.1| Parvulin-like peptidyl-prolyl isomerase [Reinekea sp. MED297]
          Length = 404

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/381 (11%), Positives = 114/381 (29%), Gaps = 41/381 (10%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                      +         +            +   +      L +++LD ++  +  
Sbjct: 26  DRIAAVANDDVITELQLAQRVEAVRQQYRSNPNVLPTDDV-----LTRQVLDAMILESLQ 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E   L     +V   I             + D  ++ +   G +  ++ +   + +
Sbjct: 81  MQLAERGNLVIPEQQVNAAIQSIASRQN----MTLDQLLAAVQSSGQSVSDFREQIRREI 136

Query: 160 SRTDVVGMFVG-GMRPSNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
           +  ++    VG  +  S+  +++  +    ++       L  +            L    
Sbjct: 137 TLNELQQQIVGRQIFISDAEVERFLKSQSGQSLQETEYQLYYKRFDVDQQAEADALVDRL 196

Query: 218 EKYKDNYRAPEYKRISYILFD--VHEKEKKIEISNDE------------LQAEYEKNKEK 263
              +    +P+ + +     D         + +  +             L    +K +  
Sbjct: 197 NSGESLLDSPDSRDLGMRTLDQIPSIFRTLVPVLEENEAVLLPRDGVLHLAQLADKTEAA 256

Query: 264 YFSPEIRTVEQLVFPN---------QKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
             + E   +  ++            Q  A++  Q +  G+   +LA+E  +         
Sbjct: 257 SVNIEEYQLRHILIKTDQLFNAESAQALAEDLRQRVLNGESMAELADEYSQDNGSRGRGG 316

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG  + +   + S  D+  S  ++G+ + V    +G+    V   +     +   ++  
Sbjct: 317 ELGWATLDNYVE-SFRDAARS-TEEGELSDVFRSPYGFHFLRVEGQRTRDVGT-DVLRNQ 373

Query: 371 IANQMRITKASEKVKEDYKRL 391
           I NQ+   + SE ++     L
Sbjct: 374 IRNQLSQQRYSEALQRWQSEL 394


>gi|91783535|ref|YP_558741.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           xenovorans LB400]
 gi|91687489|gb|ABE30689.1| Putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           xenovorans LB400]
          Length = 259

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 4/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K    ++ E+ A Y    +     E   +  ++  N+++A +    +K G  F  L
Sbjct: 103 EDFVKNNTPTDAEVTARYNALIKDAGGKEY-HLHHILVDNEQQAKDLIAKIKAGASFEDL 161

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    +S         AD+   L K       +H  FG+ I  V ++
Sbjct: 162 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKGQMTDTPVHTQFGWHIIRVDDV 221

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +       ++V+  I  Q++  K  
Sbjct: 222 RNVTPPPLEQVRPQIVQQIQQEKLQ 246



 Score = 42.3 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 41/119 (34%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G +F D+ K       +      +D ++ K +  +           
Sbjct: 142 EQQAKDLIAKI-KAGASFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P+     + + +V + +       ++    + Q + ++ L +    L+    + 
Sbjct: 201 QMTDTPVHTQFGWHIIRVDDVRNVTPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259



 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           ++  K L   +  G S ++++++        P     G D+   +  A     +      
Sbjct: 142 EQQAKDLIAKIKAGASFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFADAAT 195

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
                   D  V    G +  +++ +        LE+V   + +  +  K  
Sbjct: 196 HLQKGQMTDTPVHTQFG-WHIIRVDDVRNVTPPPLEQVRPQIVQQIQQEKLQ 246


>gi|187928546|ref|YP_001899033.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12J]
 gi|187725436|gb|ACD26601.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12J]
          Length = 265

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 5/160 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K    + DEL  +Y+K K ++ + +      ++   + +A      LK G KF  +
Sbjct: 102 EDYVKNSPATEDELHKQYDKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGAKFEDI 161

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           A+ Q K     + G       P   + +  +  +  KKG  T   +   FG+ +  + + 
Sbjct: 162 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGQITQTPVKTQFGWHVIRLDDT 221

Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394
           + +   S++EVK  +   M   +     K +   K L E 
Sbjct: 222 RDAKIPSYEEVKPQLLEMMMGDQNWQRSKFQAMLKDLREK 261


>gi|15604429|ref|NP_220947.1| protein export protein PRSA precursor (prsA) [Rickettsia prowazekii
           str. Madrid E]
 gi|20138858|sp|Q9ZCX6|PLP_RICPR RecName: Full=Parvulin-like PPIase; AltName: Full=29.5 kDa outer
           membrane antigen; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase plp; AltName: Full=Rotamase plp;
           Flags: Precursor
 gi|3861123|emb|CAA15023.1| PROTEIN EXPORT PROTEIN PRSA PRECURSOR (prsA) [Rickettsia
           prowazekii]
 gi|4581486|emb|CAA61657.1| parvulin, PPIase-like protein [Rickettsia prowazekii]
 gi|10303401|emb|CAC10161.1| parvulin-like PPIase [Rickettsia prowazekii]
 gi|292572198|gb|ADE30113.1| Parvulin-like peptidyl-prolylisomerase [Rickettsia prowazekii Rp22]
          Length = 282

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 7/154 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  I++     EY K  +     E   V  ++  +QKEA+     L KG  F +LAEE  
Sbjct: 116 KSNITDKMFDDEYNKYVDNLKGKEQIKVAHILVKSQKEANTVKTKLSKGGNFTKLAEEFS 175

Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              +  S G      I +             F+L K  + +  +  SFG+ I  V   KP
Sbjct: 176 LDKATASNGGIIGYIILNQPGQLVPEFEQKAFAL-KVNEVSTPVKTSFGWHIIKVLEKKP 234

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               + +E K  I N +      + + +   + +
Sbjct: 235 VPIPTKEEAKVTIDNILAAEILKQYISDLEAKAD 268


>gi|116620335|ref|YP_822491.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223497|gb|ABJ82206.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 327

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 87/255 (34%), Gaps = 44/255 (17%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            L+   +  +         + ++   R  F  + +  ++L+        D ++       
Sbjct: 66  ALTAGQLEQILEAYSEAQRVYVNGPGRPQFIQQLIRVLMLSQEGKRRKLDETD------- 118

Query: 218 EKYKDNYRAPEYKRISYIL--FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
                 YR       + IL      +  KKI+I +  L+   + +   Y          +
Sbjct: 119 -----RYRNQLTYSAAGILSNHTEEDIRKKIKIDDAMLEDYLKAHPLDYM---QVRARHI 170

Query: 276 VFPNQ-------------------KEADEAFQSLKKGKKFIQLAEEQGKSLS----DISL 312
           +                        +A E    +  G  F  +A+ +   +S       L
Sbjct: 171 LIRTPGSSLPLEPGQKELTDAEALTKAQELRAKIVAGADFADVAKIESNDISTNTKGGDL 230

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           G F +  +   S+ ++ F+L K G+ +  +  S GY +  V  IKP    SF+E++ D+ 
Sbjct: 231 GFFKRGQMA-PSIEEAAFAL-KPGEISQPVKTSMGYTVIKVEEIKP--VKSFEELRPDLE 286

Query: 373 NQMRITKASEKVKED 387
             +R     + V + 
Sbjct: 287 RNLRNELTRKYVDDL 301


>gi|330891199|gb|EGH23860.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 440

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 31  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++  +  +   + +
Sbjct: 86  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141

Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V                 + L  DQ K    E   +  I++      +      A 
Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + + +  
Sbjct: 202 VKAKGIYDQLKKGADFTQLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 261

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            ++ A++ +  ++
Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 321

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F +LA+    + G +L+   L       +        + +   +G+ +     ++G
Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 379

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + ++  A N +R  K  E+++   +++ +   +   +   ++
Sbjct: 380 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437

Query: 407 REK 409
             +
Sbjct: 438 AAQ 440


>gi|75762890|ref|ZP_00742701.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228899846|ref|ZP_04064091.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 4222]
 gi|74489622|gb|EAO53027.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228859750|gb|EEN04165.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 4222]
          Length = 285

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248
           Y ++    +      S+  + +  EK K  Y     +  E   +       ++ + K+ +
Sbjct: 57  YEMMAQDVITKKYKVSDEEVNKEVEKVKKQYGDQFKKVLENNGLKDEEDFKNQIKFKLAM 116

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           +    ++  EK+ + ++ PEI+    ++  ++ EA E    L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L   G  +  +  S GY +  +++ K      +
Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231

Query: 365 QEVKKDIANQMRITKASEKVKED 387
            EVKK I   +   + ++ +   
Sbjct: 232 DEVKKSIRKNLEEERIADPIFSK 254



 Score = 38.0 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 56/148 (37%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKKS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  + A+ + SK  +L+ E  K+
Sbjct: 238 IRKNLEEERIADPIFSK--KLLQEELKK 263


>gi|221198202|ref|ZP_03571248.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           multivorans CGD2M]
 gi|221208305|ref|ZP_03581308.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           multivorans CGD2]
 gi|221171718|gb|EEE04162.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           multivorans CGD2]
 gi|221182134|gb|EEE14535.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           multivorans CGD2M]
          Length = 260

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 3/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               KK + ++ E++A Y++  +         +  ++  ++++A +    +K G KF  L
Sbjct: 103 ENFLKKNQPTDAEVKARYDELVKTAGGNREYHLHHILVDSEQQAKDLIAKIKGGAKFEDL 162

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    +S         A +   L K       +   FG+ I  V +I
Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDEPVKTQFGWHIIRVDDI 222

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +      F +VK  IA Q+   K  
Sbjct: 223 RDVAPPPFAQVKAQIAQQLVQQKLQ 247



 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G  F D+ K       +      +D ++ K +  +  +        
Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P++    + + +V + +        +  + + Q + +  L +    L+ Q  + 
Sbjct: 202 QMTDEPVKTQFGWHIIRVDDIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQQAKIQ 260



 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 36/123 (29%), Gaps = 10/123 (8%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           ++  K L   +  G   ++++++        P     G D+   +  A     +      
Sbjct: 143 EQQAKDLIAKIKGGAKFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAQ 196

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSS 501
                   D  V    G +  +++ +          +V   + +     K     E +  
Sbjct: 197 KLQKGQMTDEPVKTQFG-WHIIRVDDIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQ 255

Query: 502 KAN 504
           +A 
Sbjct: 256 QAK 258


>gi|187923910|ref|YP_001895552.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phytofirmans PsJN]
 gi|187715104|gb|ACD16328.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phytofirmans PsJN]
          Length = 259

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 4/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K    S+ E+ A Y    +     E   +  ++  N+++A +    +K G  F  L
Sbjct: 103 EDFVKNNTPSDAEVTARYNALIKDAGGKEY-HLHHILVDNEQQAKDLIAKIKAGASFEDL 161

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    +S         AD+   L K       +H  FG+ I  V ++
Sbjct: 162 AKQFSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKGQMTDTPVHTQFGWHIIRVDDV 221

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +       ++V+  I  Q++  K  
Sbjct: 222 RNITPPPLEQVRPQIVQQIQQEKLQ 246



 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 41/119 (34%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G +F D+ K       +      +D ++ K +  +           
Sbjct: 142 EQQAKDLIAKI-KAGASFEDLAKQFSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P+     + + +V + +       ++    + Q + ++ L +    L+    + 
Sbjct: 201 QMTDTPVHTQFGWHIIRVDDVRNITPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259



 Score = 40.4 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 50/152 (32%), Gaps = 15/152 (9%)

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASE-----KVKEDYKRLEEFLA---LGTSMDEI 404
           + +   + T S  EV       ++     E      + ++ ++ ++ +A    G S +++
Sbjct: 102 IEDFVKNNTPSDAEVTARYNALIKDAGGKEYHLHHILVDNEQQAKDLIAKIKAGASFEDL 161

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           +++        P     G D+   +  A     +              D  V    G + 
Sbjct: 162 AKQFS----KDPGSGKNGGDLDWSDPKAY--VPEFADAATHLQKGQMTDTPVHTQFG-WH 214

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
            +++ +        LE+V   + +  +  K  
Sbjct: 215 IIRVDDVRNITPPPLEQVRPQIVQQIQQEKLQ 246


>gi|170759119|ref|YP_001785376.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169406108|gb|ACA54519.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A3
           str. Loch Maree]
          Length = 247

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 5/138 (3%)

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFS 316
           NKE++ + E+ T   ++  ++KEA+  ++ +K G  F + AE+  K  S     SLG+F+
Sbjct: 106 NKEEFRTQELITARHILVDSEKEANNIYEEIKDGLDFSEAAEKYSKCPSKAQGGSLGTFT 165

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           +  +       ++   A+    T  I   FGY +  V NIK S    F EVK  I N++ 
Sbjct: 166 RGQMV-PEFEKAVLE-AEVDKVTEAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKLL 223

Query: 377 ITKASEKVKEDYKRLEEF 394
             K +E+  E  + L + 
Sbjct: 224 QEKQNEQYNEFTQNLRDK 241


>gi|220935188|ref|YP_002514087.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996498|gb|ACL73100.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 270

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 91/231 (39%), Gaps = 7/231 (3%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN--NRHVPAIADPSNAVLTQWFEKYKDNY 224
             V G+  S              R  + ++ +     +  +     A L Q  ++  D  
Sbjct: 38  AMVNGVAISEADFQDFLNLQRMTRPGENLLPDEVLDEMINMELLRQAALQQGLDRDPDIQ 97

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
           R  E  R + ++  + ++    + + ++L+AEY++  +     E +    ++  ++ +A 
Sbjct: 98  RQVERARTNLMVGALIDQRLNQDYTEEQLRAEYDRQIQAIDRTEYK-ARHILLDSEADAR 156

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           E   +L+ G  F +LA E     S      LG F+ + +   + ++++ ++ K       
Sbjct: 157 EVIAALEAGGDFQELAREHSTGPSGPMGGDLGWFTADAMV-PAFSEAVQAMEKGSYSNEP 215

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +   FG+ +  + + + S    F+ V+  +A  +      + + +     +
Sbjct: 216 VQTEFGWHVILLEDTRRSEPPPFEAVRDRVAQILDNRALQDYIGDLRTAAK 266



 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 44/145 (30%), Gaps = 24/145 (16%)

Query: 19  VVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
            +L V  +   G  +A  +      V  V    +  + F +    +      + G  +  
Sbjct: 12  GLLTVTLITGCGRGEAPQAEISGEAVAMVNGVAISEADFQDFLNLQR---MTRPGENLLP 68

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
           +          +LD +++   L Q     GL+           R P    +  +   ++ 
Sbjct: 69  DE---------VLDEMINMELLRQAALQQGLD-----------RDPDIQRQVERARTNLM 108

Query: 138 VSRLAREGINEKEYIDHYTKMLSRT 162
           V  L  + +N+    +       R 
Sbjct: 109 VGALIDQRLNQDYTEEQLRAEYDRQ 133



 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 78/221 (35%), Gaps = 20/221 (9%)

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF---GKDDPLSKDHTVALPDGSYMWVQIK 469
           ++L  +   G+++   EV       +LL +     G D        V     + M   + 
Sbjct: 54  LNLQRMTRPGENLLPDEVLDEMINMELLRQAALQQGLDRDPDIQRQVERARTNLMVGALI 113

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAE------EVSSKANQ-LVLEYSKEGKNFRDIGK 522
           +    +D   E++  +  +  + +   E       + S+A+   V+   + G +F+++ +
Sbjct: 114 DQRLNQDYTEEQLRAEYDRQIQAIDRTEYKARHILLDSEADAREVIAALEAGGDFQELAR 173

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFS-----GPVEMVKCFPIENGLSYVVFKVT 577
                  +T     M  +  +F  D +   FS              P++    + V  + 
Sbjct: 174 E-----HSTGPSGPMGGDLGWFTADAMVPAFSEAVQAMEKGSYSNEPVQTEFGWHVILLE 228

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           +++       +     + Q+++   L   I  L++   + V
Sbjct: 229 DTRRSEPPPFEAVRDRVAQILDNRALQDYIGDLRTAAKIEV 269


>gi|91202358|emb|CAJ75418.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 318

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 109/347 (31%), Gaps = 91/347 (26%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
               V  V  QK+  +           ++    G               + LD L+    
Sbjct: 44  DKDVVAIVNGQKITSNEL-------YELLLSTYG--------------NEALDVLIRRTL 82

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           ++Q     G+                                     +  KE  +     
Sbjct: 83  INQEARKHGIS------------------------------------LTTKEVENKI--- 103

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
                            N L+ +      +   ++    N   +    +   A L ++  
Sbjct: 104 -----------------NTLVQREVNALLQTYKIE----NEADLDKELEKIGASLKEF-- 140

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             KD       K     L       K I +S ++LQ  Y+         E    +Q+V  
Sbjct: 141 --KDKLTKRLVKEAEIELRAEKVVMKTISVSEEDLQEAYKSIYG-----EKIEAQQIVLK 193

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
            ++EA+EA + L+ G    ++A+ Q    +  S       + P+  +  S+  L K G+ 
Sbjct: 194 TKREAEEALEKLRLGADITKMAKAQSIDRASASRDGKMLPFSPEDDIGKSVAHL-KPGEL 252

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
           + +I+ ++GY I  ++  K      F  VKK++   +R  K  E+++
Sbjct: 253 SGIINTNYGYHIVKITGRKTGSDKKFDTVKKELEELVREKKYRERLR 299


>gi|157803578|ref|YP_001492127.1| protein export protein PrsA precursor [Rickettsia canadensis str.
           McKiel]
 gi|157784841|gb|ABV73342.1| Protein export protein PrsA precursor [Rickettsia canadensis str.
           McKiel]
          Length = 282

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 66/189 (34%), Gaps = 7/189 (3%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
             V        K+     E  +      ++     K  I++     EY K        E 
Sbjct: 81  EEVAKSHITASKEFQEKLENAKNQLAQQELLANYIKSNITDKMFDDEYNKYVGNLKGKEQ 140

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD------V 323
             V  ++  +QKEA+E    L KG  F +LAEE     +  S G    + I +       
Sbjct: 141 IKVAHILVKSQKEANEIKTKLSKGGNFTKLAEELSLDKASASNGGVIGDIILNQPGQLVP 200

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
                 F+L K  + +  +   FG+ I  V   KP    + ++ K  I N +      + 
Sbjct: 201 EFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKPVPIPTKEDAKVTIDNILAAAILKQY 259

Query: 384 VKEDYKRLE 392
           + +   + +
Sbjct: 260 ISDLEAKAD 268


>gi|51473757|ref|YP_067514.1| protein export protein PrsA precursor [Rickettsia typhi str.
           Wilmington]
 gi|51460069|gb|AAU04032.1| protein export protein PrsA precursor [Rickettsia typhi str.
           Wilmington]
          Length = 286

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 7/154 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  I++     EY K  +     E   V  ++  +QKEA+     L KG  F +LAEE  
Sbjct: 120 KSNITDKMFDDEYNKYVDNLKGKEQIKVAHILVKSQKEANTVKTKLSKGGNFNKLAEEFS 179

Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              +  S G      I +          +  F+L K  + +  +   FG+ I  V   KP
Sbjct: 180 LDKATASNGGVIGYIILNQSGQLVPEFENKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 238

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               + +E K  I N +      + + +   + +
Sbjct: 239 VPIPTKKEAKVTIDNILAAEILKKYISDLEAKAD 272


>gi|294675776|ref|YP_003576391.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           capsulatus SB 1003]
 gi|294474596|gb|ADE83984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           capsulatus SB 1003]
          Length = 289

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 69/168 (41%), Gaps = 5/168 (2%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E +R +Y+   + +   +  ++ D+L+A Y+    K           ++  ++ EA    
Sbjct: 102 EVERRAYLAGMLLDYTAERAVTPDKLKAAYDTKFAKAEPSREYHAAHIIVASEAEAKAIK 161

Query: 288 QSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             +  G  F  +A+ + +     +   LG F    +     A+++ ++ K G+    +  
Sbjct: 162 AEIDGGADFATVAKAKSQDGAAANGGDLGWFDLTAMV-PPFAEAVAAM-KAGEIKGPVQT 219

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +G+ +  +   +     + +E  ++++  +R     ++V +   + +
Sbjct: 220 EYGWHVIKLMESRLGAAPTLEEATEELSGDLRQQAVQDRVTDTVAKAK 267


>gi|260437280|ref|ZP_05791096.1| foldase protein PrsA [Butyrivibrio crossotus DSM 2876]
 gi|292810590|gb|EFF69795.1| foldase protein PrsA [Butyrivibrio crossotus DSM 2876]
          Length = 239

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 79/206 (38%), Gaps = 14/206 (6%)

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
           +  ++  + P   +      F  + +S     ++   +       +       E+YK+  
Sbjct: 13  IDQYIATLAPEQQMYKDVPAFRDQVKS-RLEEISLFAMEGEEKHLDDT-----EEYKNTL 66

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
                +R       + E    ++++++E++  YE +KE++      +   ++  ++   +
Sbjct: 67  SV--VRRDVLGQLAMAEIINDVDVTDEEVKDYYENHKEQFGRAASVSASHILVDSEDRCN 124

Query: 285 EAFQSLKKG-KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           E    ++ G K F   A+E     S     SLG+F K  +      D+ F+  +      
Sbjct: 125 EIKSEIENGGKSFEDAAKEYSTCPSGKSGGSLGTFGKGQMVK-EFEDASFN-GELNKILG 182

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQE 366
            +   FGY +  V   + +  + F++
Sbjct: 183 PVKTKFGYHLIRVDEREDASVMPFEQ 208


>gi|228951646|ref|ZP_04113749.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228808039|gb|EEM54555.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 269

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 81/203 (39%), Gaps = 14/203 (6%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248
           Y ++    +      S+  + +  EK K  Y     +  E   +       ++ + K+ +
Sbjct: 41  YEMMAQDVITKKYKVSDEEVNKEVEKVKKQYGDQFKKVLENNGLKDEEDFKNQIKFKLAM 100

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           +    ++  EK+ + ++ PEI+    ++  ++ EA E    L  G  F +LA+++ + L 
Sbjct: 101 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 159

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L   G  +  +  S GY +  +++ K      +
Sbjct: 160 SKDKGGDLGYFNSGTMA-PEFERAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 215

Query: 365 QEVKKDIANQMRITKASEKVKED 387
            EVK  I   +   + ++ V   
Sbjct: 216 DEVKNSIRKNLEEERTADPVFSK 238



 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 112 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 171

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 172 SGT------MAPEFERAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 221

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  +TA+ V SK  +L+ E  K+
Sbjct: 222 IRKNLEEERTADPVFSK--KLLQEELKK 247


>gi|218896199|ref|YP_002444610.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus G9842]
 gi|228964209|ref|ZP_04125331.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218545279|gb|ACK97673.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus G9842]
 gi|228795460|gb|EEM42945.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 285

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 81/203 (39%), Gaps = 14/203 (6%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248
           Y ++    +      S+  + +  EK K  Y     +  E   +       ++ + K+ +
Sbjct: 57  YEMMAQDVITKKYKVSDEEVNKEVEKVKKQYGDQFKKVLENNGLKDEEDFKNQIKFKLAM 116

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           +    ++  EK+ + ++ PEI+    ++  ++ EA E    L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L   G  +  +  S GY +  +++ K      +
Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231

Query: 365 QEVKKDIANQMRITKASEKVKED 387
            EVK  I   +   + ++ V   
Sbjct: 232 DEVKNSIRKNLEEERTADPVFSK 254



 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  +TA+ V SK  +L+ E  K+
Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263


>gi|303234820|ref|ZP_07321445.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4]
 gi|302493938|gb|EFL53719.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4]
          Length = 321

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/380 (15%), Positives = 134/380 (35%), Gaps = 79/380 (20%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
            + + +  ++  ++      +G+  V  +G++ +         +       Q I F  N+
Sbjct: 4   FLAIVLAMMMVMVTACSNKPNGA--VAKIGKEYIYQKDVDKVMEDYKQYYGQDI-FNPNT 60

Query: 78  ERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
           E+ +     +  KI+D L++    ++ ++D  +E     V  E+ +      +      D
Sbjct: 61  EQGKEALKQIKPKIIDMLINEKIANKLMKDKKIEVSDKEVQAEVDK---LQKQLGG--AD 115

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
            F  +L +E + E+   +   K L    +   F                           
Sbjct: 116 KFKEQLKKENMTEQALKEQIEKQLKNKKLSQQF--------------------------- 148

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE-KKIEISNDELQ 254
                       PS+  +   F+K  D Y         +ILF   + + K ++ S  + +
Sbjct: 149 -------EKDFKPSDKEIKDEFDKNIDTYT---QYNADHILFSGKDAKGKNLDASKLKAK 198

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
           +                         + AD+ ++ +K GK F ++A+ + +  S      
Sbjct: 199 S-------------------------ELADKTYEEVKDGKNFNEVAKAKSEDPSAKQNSG 233

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +     +D++  + K G+ +  +   FGY I  +++            K++
Sbjct: 234 KLGDFLSSTMVK-EFSDALKKM-KPGEVSKPVKTEFGYHIIKLNSKVTELDKMTDANKQN 291

Query: 371 IANQMRITKASEKVKEDYKR 390
           I   +      EKV++++++
Sbjct: 292 IKTAISNKIIQEKVQKEFEK 311


>gi|229161287|ref|ZP_04289272.1| Foldase protein prsA 1 [Bacillus cereus R309803]
 gi|228622101|gb|EEK78942.1| Foldase protein prsA 1 [Bacillus cereus R309803]
          Length = 256

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 86/226 (38%), Gaps = 12/226 (5%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKIEI 248
           Y ++ ++ +      S+    +  E+ KD    N++   E   +        + + +I  
Sbjct: 28  YQMMLSKALLDKYKVSDEEAQKKVEEAKDKMGDNFKSTLEQLGLKNEDELKEKMKPEIAF 87

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
                +   EK+ ++ + PE++ V  ++  ++K A E  + +  G+ F  LA++  +   
Sbjct: 88  EKAIKETVTEKDVKENYKPEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTG 146

Query: 309 DISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
               G     + P        ++ + L   G  +  I  ++GY I   ++ K      F 
Sbjct: 147 SKEQGGEIPGFAPGQTVKEFEEAAYKL-DAGQVSEPIKTTYGYHIIKATDKKE--LKPFD 203

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
           EVK +I   +   +  +   +  +++   L     +    +  K  
Sbjct: 204 EVKGEIRKDLEEQRLQDTTGKWKQQVVTDLLKAADIKVNDKEFKDT 249


>gi|71733994|ref|YP_272934.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554547|gb|AAZ33758.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 440

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 31  ESVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++  +  +   + +
Sbjct: 86  LQMGERSGIRVSDNELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141

Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V                 + L  DQ K    E   +  I++      +      A 
Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + + +  
Sbjct: 202 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 261

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            ++ A++ +  ++
Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 321

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F +LA+    + G +L+   L       +        + +   +G+ +     ++G
Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 379

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + ++  A N +R  K  E+++   +++ +   +   +   ++
Sbjct: 380 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437

Query: 407 REK 409
             +
Sbjct: 438 AAQ 440


>gi|262277260|ref|ZP_06055053.1| hypothetical protein HIMB114_0679 [alpha proteobacterium HIMB114]
 gi|262224363|gb|EEY74822.1| hypothetical protein HIMB114_0679 [alpha proteobacterium HIMB114]
          Length = 467

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/380 (15%), Positives = 140/380 (36%), Gaps = 54/380 (14%)

Query: 25  FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
           F  WG+ D LFS    + +  +  +KV    +I S +  +   ++     ++        
Sbjct: 21  FGAWGMGD-LFSDGNKNIIAQIKDKKVFTKEYIESARNYVNRKNKTELTDIDHSL----- 74

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
               IL++L++    ++F ED+G+  +   +   I     F   + KFS   +   L   
Sbjct: 75  ----ILNDLLAEKIYEKFAEDLGIIINDDALAYYIKSLENFKDSNGKFSRVEYEKFLLLN 130

Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
            IN K+  +   K L +  VV +F  G+  ++  + + +  + +  + ++  + N     
Sbjct: 131 NINVKKLEERLKKELIKNLVVKVFTNGVSSTDYHIKKIENEFLKQVNAEFYQIGNYE--- 187

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
               S+  + ++F + K  +   E +       D                  +EK  +++
Sbjct: 188 --KISDEKIEKYFNQNKQKFSLGELREGEVAKLDNKTLG-------------FEKENDQF 232

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYI- 320
           +               K  ++    +     +I L ++       L  I+    +K  + 
Sbjct: 233 Y---------------KLLNDIENDVVNNLNYIDLKKKYNIKTSLLEKINKNGINKNRLL 277

Query: 321 -PDVSLADSIFSLAK--KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-VKKDIANQMR 376
                  + +FSL +  K +   + +  +   + H+ NI   + V  +  +KK+I + + 
Sbjct: 278 SEQKQFKEILFSLTENFKTEIIEIENVKY---LVHLKNIIKDYEVKLETGIKKEIQDILN 334

Query: 377 ITKASEKVKEDYKRLEEFLA 396
             K     K   +  ++ + 
Sbjct: 335 YQKNKMLAKNITESNDDDIF 354


>gi|67459334|ref|YP_246958.1| protein export protein PrsA precursor [Rickettsia felis URRWXCal2]
 gi|75536240|sp|Q4UKY0|PLP_RICFE RecName: Full=Parvulin-like PPIase; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase plp; AltName: Full=Rotamase plp;
           Flags: Precursor
 gi|67004867|gb|AAY61793.1| Protein export protein PrsA precursor [Rickettsia felis URRWXCal2]
          Length = 282

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  I++     EY K        E   V  ++  +QKEA+     L KG  F +LAEE  
Sbjct: 116 KSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANNIKTKLSKGGNFTKLAEESS 175

Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              +  S G      + +             F+L K  + +  +   FG+ I  V   KP
Sbjct: 176 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               + +E K  I N +      + + +   + +
Sbjct: 235 VPIPTKEEAKVTIDNILAAEVLKKYISDLEAKAD 268


>gi|265762561|ref|ZP_06091129.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
 gi|263255169|gb|EEZ26515.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
          Length = 712

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 92/718 (12%), Positives = 209/718 (29%), Gaps = 118/718 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     S  V  V  + +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGETLSAQDYQNMVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   +I    G    ++  ++  +  ++  + V+   +++  + +G+      +   I  
Sbjct: 61  EYTEVIKFSSGMSSLNDE-QTNQVKDEVWRSYVNNKLIEKEAKKLGITVSKAEIQSIINE 119

Query: 120 -----ARSPLFHGK-DNKFSH---DVFVSRLAREGIN--EKEYIDHYT----------KM 158
                 +   F       F       F++  ++        +Y+++Y           K 
Sbjct: 120 GVNPLLQQTPFRNPQTGAFDKDMLKKFLADYSKMDKTKMPSQYVEYYEGMHKLWSFVEKT 179

Query: 159 LSRTDV-------------------VGMFVGGMRPSNLLL-------------------- 179
           L ++ +                      F   +  S++LL                    
Sbjct: 180 LIQSRLAEKYQALVTKALFSNPVEAQDAFDARVNQSDVLLAAVPYSSIVDSTITVKESEL 239

Query: 180 -------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK---DNYRAPEY 229
                   +  + Y E R++ YI +               +T +  +      +Y     
Sbjct: 240 KDLYNKKKEQFKQYVETRNIKYIDVQVTASAEDRAAIQQEVTDYTNQLATANGDYTTFIR 299

Query: 230 KRISYILFDVHEKEKKIEISNDELQA-----------EYE---------KNKEKYFSPEI 269
              S   +      KK   S+   +             Y          K   K  + + 
Sbjct: 300 STGSEYPYVDLYYTKKAFPSDVVARMDSASIGQVYGPYYNAGDNTINSFKVLSKVAAADS 359

Query: 270 RTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYI- 320
               Q+          +  AD  + ++K G  F  LA++ G++   + IS  ++    + 
Sbjct: 360 VQFRQIQVYTEDAAKTKALADSIYTAIKGGADFTALAKKYGQTGESNWISSANYENAQVD 419

Query: 321 -PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
             ++    +I +L    + + V  G  G +I  V++ K         V   I   +  +K
Sbjct: 420 GDNLKFISTINNLG-VNELSNVALGQ-GNIILQVTDKKAVKDKYKVAV---IKRAVEFSK 474

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
             E   + Y    +F+A   ++D+++   +     L   +       G  +  I   ++ 
Sbjct: 475 --ETYNKAYNEFSQFIAANPTVDKVAANAEESGYKLLERNDLYSSEHG--IGGIRGTKEA 530

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           L   F                   + V +   I    R L +V   ++ +    K AE++
Sbjct: 531 LKWAFAAKPGEVSGLYECGESDRMLVVGLVSVIEEGYRPLVQVQDQLRAEIIRDKKAEKI 590

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
            +           +   +  +   +  S+                    +    S     
Sbjct: 591 MADMKAANATTIAQ---YTSMANAVSDSVKHVTFAAPAYVAALRSSEPLVGAYASVSDIN 647

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               PI+      V +V            +      + M+  L    +  L  +  V 
Sbjct: 648 KLSAPIKGNGGVFVLQVYAKDKLNETFDAQSEEATLENMHARLASRFMNDLYLKGDVK 705


>gi|160947370|ref|ZP_02094537.1| hypothetical protein PEPMIC_01304 [Parvimonas micra ATCC 33270]
 gi|158446504|gb|EDP23499.1| hypothetical protein PEPMIC_01304 [Parvimonas micra ATCC 33270]
          Length = 328

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 77/196 (39%), Gaps = 21/196 (10%)

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
             A  +   L    E               Y         +  + +++E+  +Y   K  
Sbjct: 141 EKAKLTEDELKYKIEDN------------LYSTKFQTWFSENYDPTDEEIMEKY---KGS 185

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEY 319
            F         ++  N+++A +    L+ G+KF  +A E  K  S       LG+F+K  
Sbjct: 186 DFDGPQINASHILVENEEDAKKVKSRLEAGEKFEDVATEVSKDPSAKKNKGVLGTFTKGV 245

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           +      D+   L K G+ +  +   FGY I  ++ I   +     E KK I   ++ + 
Sbjct: 246 MVK-EFYDAAVKL-KVGEISDPVKTKFGYHIIKLNEIVEDYDKFSDESKKRIKQNLKKSL 303

Query: 380 ASEKVKEDYKRLEEFL 395
            SEK K +++++++ +
Sbjct: 304 LSEKFKTEFEKIQKEV 319


>gi|225873725|ref|YP_002755184.1| peptidyl-prolyl cis-trans isomerase, PpiC type [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793223|gb|ACO33313.1| peptidyl-prolyl cis-trans isomerase, PpiC type [Acidobacterium
           capsulatum ATCC 51196]
          Length = 372

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/370 (12%), Positives = 116/370 (31%), Gaps = 78/370 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +  + +V  + +  S     ++  +G   +K        + +   +   IL  L++   L
Sbjct: 49  ADVLATVNGKPIMKSQVDLLYEANVGKQPEK------PTKVQGDIVRLNILSRLINEEIL 102

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q    + L A +  V   +            F+ D F  +LA++ +            L
Sbjct: 103 MQRAAKMNLVASNEDVESRLNEIKA------PFTPDEFQKQLAQQHLTLDALKQQIRNQL 156

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +   +                                   + + +  D ++  +T ++  
Sbjct: 157 TEQKLFN---------------------------------KEINSKIDVTDDQITAYYNA 183

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +K  +  P   +       V    +  + S        + +K    +   R ++ L    
Sbjct: 184 HKAEFNLP-QPQFHLAQILVTNIPENAKNS-----GNLQNSKAMNDAEAKRKIQML---- 233

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYI-PDVSLADSIFSLAK 334
                     LK G  F  LA    +    S +   +G  S++ +  D  +  ++  L+ 
Sbjct: 234 -------DDRLKNGDDFGTLASNFSENPQNSSNGGDMGFISQQELQSDPDVWGAVSKLS- 285

Query: 335 KGDFTPV--------IHGSFGYVIAHVSNIKPSFTVSFQE--VKKDIANQMRITKASEKV 384
            G+ TPV             GY I  + + + +  +   +  V++ I  ++  +++    
Sbjct: 286 PGEITPVLPVYATQDHKKVIGYAIYKLLDKEGAGQLELSDPRVQQSIRQRLHESRSQLMQ 345

Query: 385 KEDYKRLEEF 394
               + L + 
Sbjct: 346 NAYLEMLRDQ 355


>gi|301052807|ref|YP_003791018.1| peptidylprolyl isomerase [Bacillus anthracis CI]
 gi|300374976|gb|ADK03880.1| peptidylprolyl isomerase [Bacillus cereus biovar anthracis str. CI]
          Length = 285

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 30/206 (14%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240
           Y ++    +      S+  + +  +K K  Y             +     +         
Sbjct: 57  YEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLKDEADFKNQIKFKLSM 116

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
            K  K  ++  +++  Y+        PEI+    ++  ++ EA E  + L  G  F +LA
Sbjct: 117 NKAIKQSVTEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167

Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +++ + L        LG F    +       + + L K G  +  +    GY I  ++  
Sbjct: 168 KQESQDLLSKEKGGDLGYFHSGAMT-PEFETAAYKL-KIGQISDPVQSPNGYHIIKLTGK 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382
           K      + EVK  I   +   + ++
Sbjct: 226 KD--LKPYDEVKNSIRKNLEEERTAD 249



 Score = 36.9 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFH 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G   A  P  E   +++            V  P+G Y  +++        +  +EV   
Sbjct: 188 SG---AMTPEFETAAYKL----KIGQISDPVQSPNG-YHIIKLTGKKD--LKPYDEVKNS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  +TA+
Sbjct: 238 IRKNLEEERTAD 249


>gi|322804319|emb|CBZ01869.1| foldase protein PrsA precursor [Clostridium botulinum H04402 065]
          Length = 247

 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 5/138 (3%)

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFS 316
           NKE++ + E+ T   ++  +++EA+  ++ +K G  F + AE+  K  S     SLG+F+
Sbjct: 106 NKEEFRTQELITARHILVDSEEEANSIYEEIKNGLDFSEAAEKYSKCPSKAQGGSLGTFT 165

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           +  +       ++   A+    T  I   FGY +  V NIK S    F EVK  I N++ 
Sbjct: 166 RGQMV-PEFEKAVLE-AEVDKVTEAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKLL 223

Query: 377 ITKASEKVKEDYKRLEEF 394
             K +++  E  + L + 
Sbjct: 224 QEKQNQQYNEFTQNLRDK 241


>gi|229010553|ref|ZP_04167755.1| Foldase protein prsA 2 [Bacillus mycoides DSM 2048]
 gi|228750751|gb|EEM00575.1| Foldase protein prsA 2 [Bacillus mycoides DSM 2048]
          Length = 285

 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 81/198 (40%), Gaps = 14/198 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248
           Y ++    +      S+  + +  EK KD Y        E  R+       ++ + K+ +
Sbjct: 57  YEMVAQDVITKKYKVSDDAVDKEVEKAKDQYGEQFKATLENNRLKDEEDFKNQIKFKLAL 116

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           +    Q+  EK+ + ++ PEI+    ++  N+ EA E  + L  G  F +LA+++ + L 
Sbjct: 117 NEAIKQSVTEKDVKDHYKPEIK-ASHILVSNENEAKEIKKKLDTGTSFEELAKQESQDLA 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              +   LG F    +       + + L K    +  +    GY I  +++ K      +
Sbjct: 176 SKDNGGDLGYFGAGKMT-PEFEKAAYKL-KPDQISNPVKSPNGYHIIKLTDKKD--LQPY 231

Query: 365 QEVKKDIANQMRITKASE 382
            +VK  I   +   + ++
Sbjct: 232 DKVKDSIRKDLEEERLAD 249



 Score = 37.3 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  GTS +E++++E   S DL   D  G   
Sbjct: 128 DVKDHYKPEIKASHILVSNENEAKEIKKKLDTGTSFEELAKQE---SQDLASKDNGGDLG 184

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
                   P  E+  +++     P    + V  P+G Y  +++ +      +  ++V   
Sbjct: 185 YFGAGKMTPEFEKAAYKL----KPDQISNPVKSPNG-YHIIKLTDKKD--LQPYDKVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++KD +  + A+
Sbjct: 238 IRKDLEEERLAD 249


>gi|229586913|ref|YP_002845414.1| Protein export protein prsA precursor [Rickettsia africae ESF-5]
 gi|228021963|gb|ACP53671.1| Protein export protein prsA precursor [Rickettsia africae ESF-5]
          Length = 282

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  I++     EY K        E   V  ++  +QKEA++    L KG  F +LAEE  
Sbjct: 116 KSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEELS 175

Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              +  S G      + +             F+L K  + +  +   FG+ I  V   KP
Sbjct: 176 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               + +E K  I N +      + + +   +  
Sbjct: 235 VPIPTKEEAKVTIDNILAAEILKKYIADLEAKAN 268


>gi|297182861|gb|ADI19012.1| parvulin-like peptidyl-prolyl isomerase [uncultured alpha
           proteobacterium HF0070_05I22]
          Length = 296

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 4/146 (2%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           + EI+   +Q+ Y+K      S E  T   ++   + EA      L+ G  F +LA+E+ 
Sbjct: 129 RAEITETAIQSAYDKFVADTASREQVTASHILVETEAEAKAVIAVLQDGGDFAELAKEKS 188

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
              S     +LG+F +  +   +   + FSL         +   FG+ +  V     +  
Sbjct: 189 TGPSGPNGGALGTFGRGQMV-PAFETAAFSLTIGSYSDTPVQTQFGWHVIKVDGKDITPA 247

Query: 362 VSFQEVKKDIANQMRITKASEKVKED 387
              + ++  +AN +        ++E 
Sbjct: 248 PDLEAMRAQLANNLSTQTLGRLLEEL 273


>gi|228919984|ref|ZP_04083338.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839697|gb|EEM84984.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 285

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 74/211 (35%), Gaps = 30/211 (14%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240
           Y ++    +       +  + +  EK K  Y             +  E  +         
Sbjct: 57  YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENNGLKDEEDYKNQIKFKLAM 116

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
            +  K  I+  +++  Y+        PEI+    ++  ++ EA E    L  G  F +LA
Sbjct: 117 NEAIKKSITEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKSKLDAGASFEELA 167

Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +++ + L        LG F+   +       + + L   G  +  +  S GY +  +++ 
Sbjct: 168 KQESQDLLSKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDK 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           K      + EVK  I   +   + ++ V   
Sbjct: 226 KD--LKPYDEVKNSIRKNLEEERTADPVFSK 254



 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  +TA+ V SK  +L+ E  K+
Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263


>gi|237747325|ref|ZP_04577805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter
           formigenes HOxBLS]
 gi|229378676|gb|EEO28767.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter
           formigenes HOxBLS]
          Length = 259

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 6/146 (4%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
              KK  +S+ E++AEY+       + +   V+ ++  N+ +A      L KG  F ++A
Sbjct: 104 NYLKKNPVSDKEIKAEYD-RVASLQNGQQYHVKHILVKNEADAQNIINQLNKGANFEKIA 162

Query: 301 EEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           +E+       + G       P       +D++ +L KKG  T   +   FGY I  + ++
Sbjct: 163 KEKSIDQGSAARGGDLSWASPSNYIKPFSDAMIAL-KKGQITKTPVKTQFGYHIIKLVDV 221

Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382
           + +   S  +VK  I   +   K  E
Sbjct: 222 RKATLPSLNQVKPKIKTSLEERKWQE 247


>gi|254472475|ref|ZP_05085875.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Pseudovibrio sp. JE062]
 gi|211958758|gb|EEA93958.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Pseudovibrio sp. JE062]
          Length = 289

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 4/168 (2%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           +  ++ DE++A Y+     Y          ++   + EA +  + L+ G  F +LA+E+ 
Sbjct: 123 QSAVTEDEVKAAYDAEYANYQGAPEINAAHILVEKEDEAKDIIKQLEGGADFAELAKEKS 182

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
              S      LG F K  +       + F+L         +   FGY +      +    
Sbjct: 183 TGPSGPNGGDLGFFGKGQMV-PEFETAAFALKPGEFTKEPVQTQFGYHVILNKEARTQPA 241

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
            + +  +  I  ++ + K  E ++E   +    +    + +  +   K
Sbjct: 242 PTLEAAEGQIRQELVLAKFREVLEELKAKNTVEIIGADADEAKAEESK 289


>gi|157828738|ref|YP_001494980.1| protein export protein prsA precursor [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|157801219|gb|ABV76472.1| protein export protein prsA precursor [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 282

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  I++     EY K        E   V  ++  +QKEA++    L KG  F +LAEE  
Sbjct: 116 KSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEELS 175

Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              +  S G      + +             F+L K  + +  +   FG+ I  V   KP
Sbjct: 176 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               + +E K  I N +      + + +   +  
Sbjct: 235 VPIPTKEEAKVTIDNILAAEILKKYIADLEAKAN 268



 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 6/136 (4%)

Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENK 542
           K+  K      +   +AN +  + SK G NF  + + L     + +    +     N+  
Sbjct: 138 KEQIKVAHILVKSQKEANDIKTKLSKGG-NFTKLAEELSLDKASASNGGVIGYILLNQPG 196

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
               +   + F+  V  V   P++    + + KV   K  P+  K++    +  ++  ++
Sbjct: 197 QLVPEFEKKAFALKVNEVST-PVKTDFGWHIIKVLEKKPVPIPTKEEAKVTIDNILAAEI 255

Query: 603 LDSVIAYLKSQYSVTV 618
           L   IA L+++ +V +
Sbjct: 256 LKKYIADLEAKANVKI 271


>gi|307352353|ref|YP_003893404.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanoplanus
           petrolearius DSM 11571]
 gi|307155586|gb|ADN34966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanoplanus
           petrolearius DSM 11571]
          Length = 93

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
                 ++  ++KEA +    L  G+ F +LA++     S      LG F K  +     
Sbjct: 4   KVRASHILVNSEKEAKDILAKLNSGENFEELAKKYSTCPSGRKGGDLGWFGKGMMVK-EF 62

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            D+ FS AK GD T  +   FGY I  ++  K
Sbjct: 63  EDASFS-AKDGDVTGPVKTQFGYHIIKITGNK 93


>gi|297183681|gb|ADI19806.1| parvulin-like peptidyl-prolyl isomerase [uncultured alpha
           proteobacterium EB000_37G09]
          Length = 288

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 4/149 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            I+ D L A Y+       S E      ++ P +  A    + L  G  F ++A+     
Sbjct: 122 AITEDALTATYKLYIADNGSREEVKARHILVPEEATARAIIEKLTGGADFAEIAKTDSTG 181

Query: 307 LSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG F++  +   +   + F L         +   FG+ I  V + + +   S
Sbjct: 182 PSGPNGGDLGYFARGAMV-PTFEAAAFELEPGSFTPEPVQTQFGWHIIKVEDKRVATPPS 240

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
           F+E+   +   +        +++     +
Sbjct: 241 FEEMVPQLRQNLLNQTLGRILEKLRASAQ 269



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 5/134 (3%)

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
             +VK   + +   EE +++A   ++E    G +F +I K         N  +       
Sbjct: 142 REEVKA--RHILVPEEATARA---IIEKLTGGADFAEIAKTDSTGPSGPNGGDLGYFARG 196

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
                  +  F          P++    + + KV + +V      ++ +  L Q +    
Sbjct: 197 AMVPTFEAAAFELEPGSFTPEPVQTQFGWHIIKVEDKRVATPPSFEEMVPQLRQNLLNQT 256

Query: 603 LDSVIAYLKSQYSV 616
           L  ++  L++   +
Sbjct: 257 LGRILEKLRASAQI 270


>gi|228913840|ref|ZP_04077465.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228845779|gb|EEM90805.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 285

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 30/206 (14%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240
           Y ++    +      S+  + +  +K K  Y             +     +         
Sbjct: 57  YEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLKDEADFKNQIKFKLSM 116

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
            K  K  ++  +++  Y+        PEI+    ++  ++ EA E  + L  G  F +LA
Sbjct: 117 NKAIKQSVTEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167

Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +++ + L        LG F    +       + + L K G  +  +    GY I  ++  
Sbjct: 168 KQESQDLLSKEKGGDLGYFHSGAMT-PEFETAAYKL-KIGQISDPVQSPNGYHIIKLTGK 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382
           K      + EVK  I   +   + ++
Sbjct: 226 KD--LKPYDEVKNSIRKNLEEERTAD 249



 Score = 36.9 bits (84), Expect = 10.0,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFH 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G   A  P  E   +++            V  P+G Y  +++        +  +EV   
Sbjct: 188 SG---AMTPEFETAAYKL----KIGQISDPVQSPNG-YHIIKLTGKKD--LKPYDEVKNS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  +TA+
Sbjct: 238 IRKNLEEERTAD 249


>gi|110834907|ref|YP_693766.1| survival protein SurA [Alcanivorax borkumensis SK2]
 gi|122070614|sp|Q0VMV4|SURA_ALCBS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|110648018|emb|CAL17494.1| Survival protein surA precursor (Peptidyl-prolyl cis-trans
           isomerase surA) [Alcanivorax borkumensis SK2]
          Length = 435

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/498 (14%), Positives = 157/498 (31%), Gaps = 86/498 (17%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
            L +L +  L+  +            V  V    +  S         + +  Q+ G  + 
Sbjct: 12  LLGLLAMAVLMIPVWSQAKVQMLDRIVAVVNDGAIMASELDERI-NTIALQFQEKGQQLP 70

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
           S       L +++LD ++      Q  E  G++ D   +   +A       + N  S + 
Sbjct: 71  SPAI----LREQVLDRMILERLQLQLAERAGIKVDEASLNEALAGI----ARQNDMSLED 122

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           F + L  +G +  ++ +   + +  + +                       + RSV    
Sbjct: 123 FAATLREDGYSWTQFREQIRQDMVISRL-----------------------QQRSV---- 155

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
                  +    ++  + ++           E  R+ +IL  V  + +  +IS       
Sbjct: 156 ------ASRIQITDREVDRFLSSELGKQMFQEDFRLGHILIRVPSEARPQQISQA----- 204

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLG 313
                                  + +A E  + L+ G  F QLA    +   +L    LG
Sbjct: 205 -----------------------RAKAKEIIERLEAGSDFQQLAIALSDGPNALEGGDLG 241

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE--VKKDI 371
                  P +   ++I    KKG+F+  +    G+ I  + + K        +  V+  +
Sbjct: 242 WRPAAQWPTLFAENAIN--LKKGEFSQPLRSGAGFHILKMIDRKGGAEKVVTQYHVRHVL 299

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
                +T A +  +   +  +E  A      E +                G   KG+ V 
Sbjct: 300 IKADALTSAEQAQQRAIRLHDEVAAGKRQFKETAAEFSDDPGSARNGGELGWVNKGEMV- 358

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
             P  EQ++      + P+ +   V      + ++++ +   A D   E       +  +
Sbjct: 359 --PEFEQVML-----NTPVGELSPVFESQFGWHFLRVDDIRDA-DMSTEFRRMQATQALQ 410

Query: 492 TVKTAEEVSSKANQLVLE 509
             +  EE+ +   +   E
Sbjct: 411 KRRFEEELETWVQEKRSE 428


>gi|47092734|ref|ZP_00230520.1| protein export protein [Listeria monocytogenes str. 4b H7858]
 gi|47018922|gb|EAL09669.1| protein export protein [Listeria monocytogenes str. 4b H7858]
          Length = 287

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 90/265 (33%), Gaps = 41/265 (15%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224
                 +   L +A +  + N  V  +    + +      +   +   ++KY++ Y    
Sbjct: 23  TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSF 81

Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                     +    + + Y L      E  + +S  +L+  Y+  +          V  
Sbjct: 82  ESTLSSNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDIT------VRH 135

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331
           ++  ++  A E    LK G+KF  LA+E     +  + G     + P   D +   + ++
Sbjct: 136 ILVDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYA 195

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           L  K D + ++  ++GY +  +                      + T A EK       +
Sbjct: 196 LENKDDVSGIVKSTYGYHLIQLVKKTE-----------------KGTYAKEKANVKAAYI 238

Query: 392 EEFLALGTSMDEISRREKIVSIDLP 416
           E  L     +  + +  K  +ID+ 
Sbjct: 239 ESQLTTENMIAALKKELKAANIDIK 263


>gi|299822144|ref|ZP_07054030.1| peptidyl-prolyl cis-trans isomerase [Listeria grayi DSM 20601]
 gi|299815673|gb|EFI82911.1| peptidyl-prolyl cis-trans isomerase [Listeria grayi DSM 20601]
          Length = 287

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 95/252 (37%), Gaps = 37/252 (14%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----- 224
            G    + L D  K    E   +  +  N + +      S+  + + +   K  Y     
Sbjct: 32  QGDVTKDELYDALKDKDGEQ-VLQLLTFN-KILDDKYKVSDKEVDKKYNAAKAQYGDQFA 89

Query: 225 -------RAPEYKRISY--ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
                     +  ++S    L      +  I++++ +LQ  Y+  + K        V  +
Sbjct: 90  SALQQANLTEKMYKLSLKNELLRQKATKAYIKVTDKKLQDYYKTWQPKIT------VSHI 143

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI---PDVSLADSIFSL 332
           +  ++K AD+  Q LK GKKF  LA++     +  + G     +     D +   + ++L
Sbjct: 144 LVADKKTADKVEQELKDGKKFADLAKKYSTDTASKTKGGKLDAFGTGQMDPAFEKAAYAL 203

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA----------NQMRITKASE 382
            +KGD +  +   FGY +  +    P+   +F++ K  +            ++      +
Sbjct: 204 KEKGDISKPVKSQFGYHVIQLDE--PAKKATFEKDKAQVKKDYIDSQMNNAEVVQAALKK 261

Query: 383 KVKEDYKRLEEF 394
           + K+   ++E+ 
Sbjct: 262 EFKDANVKVEDK 273


>gi|319943549|ref|ZP_08017831.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
           51599]
 gi|319743364|gb|EFV95769.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
           51599]
          Length = 271

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 63/149 (42%), Gaps = 6/149 (4%)

Query: 240 HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
             + K+  +++ E++AEYEK          +      ++  ++ EA +  + LKKG+ F 
Sbjct: 113 ANELKQSPVTDAEVKAEYEKLVKDSAQSGAQEYKARHILVESEDEAKQIVERLKKGEGFE 172

Query: 298 QLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            LA+   + G   +   LG  + +       ++++  L K       +   FGY I  + 
Sbjct: 173 SLAKLSKDPGSGANGGDLGWNTPDTFVK-EFSEAMTKLKKGEYTVIPVKTQFGYHIIQLD 231

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEK 383
           +++ +    F +VK  +  Q+   K    
Sbjct: 232 DVRAAEPPPFDQVKPQLKQQLERQKIQAL 260



 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 10/148 (6%)

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKA----------NQLVLEYSKEGKNFRDIGKNLGASLL 529
            EV  + +K  K    +     KA           + ++E  K+G+ F  + K       
Sbjct: 124 AEVKAEYEKLVKDSAQSGAQEYKARHILVESEDEAKQIVERLKKGEGFESLAKLSKDPGS 183

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
             N  +   N    F  +    +           P++    Y + ++ + +       D+
Sbjct: 184 GANGGDLGWNTPDTFVKEFSEAMTKLKKGEYTVIPVKTQFGYHIIQLDDVRAAEPPPFDQ 243

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               L Q + +  + ++   L++   + 
Sbjct: 244 VKPQLKQQLERQKIQALQEKLRASAKIQ 271


>gi|315185798|gb|EFU19564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           thermophila DSM 6578]
          Length = 346

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 131/399 (32%), Gaps = 78/399 (19%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF--INSWKQELGMISQKIG 72
           KI L V+ +          LF   G      V R K+          +K ++ ++ +++G
Sbjct: 5   KIVLGVVVMG---------LFPAFGQIIDAPVARVKLTKLEVITQRQFKADVELLEKQLG 55

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
             ++ E        K++LD  +    + Q  E   L      +   IA+           
Sbjct: 56  RQLSLEE------RKQLLDARIGEILIYQAAEKEYLSVTQEELSQAIAQYK--QSVAPNV 107

Query: 133 SHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           S   F   +  +G +  +++ +   K L                      A+++ ++   
Sbjct: 108 SDQEFRRLIESQGGMTWEQFQEQMKKRLI---------------------AEKYLYQK-- 144

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
                   + +  +  PS   + + + +   N+ APE  R S+I  D          S++
Sbjct: 145 ------KGQEIQNVPAPSEEEIRRVYNENISNFTAPEMVRYSHIFIDTRGL------SDE 192

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
           E +  Y              V Q+        ++  ++++K     Q +  QG  +  + 
Sbjct: 193 EKKKAYN------------RVLQVKKEVDGSLEKFREAVEKYSD-DQASRYQGGDVGYLL 239

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV--------- 362
                +E          IFSL      + V+  + GY I  V+       +         
Sbjct: 240 RTDKQRESFLGKEFFSKIFSLPLN-KVSDVLASNVGYHIVVVTEHHEPRLLGLDDRLLPN 298

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           S Q V+  I   +   K  E  ++  ++L E L     +
Sbjct: 299 SKQTVRDQITALLVGQKRQEAYQKALQKLIEELRSQADV 337


>gi|94310806|ref|YP_584016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
           metallidurans CH34]
 gi|93354658|gb|ABF08747.1| Peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans
           CH34]
          Length = 264

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 7/152 (4%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           S++EL+ +YEK K ++ + +   V  ++   + +A      +K G KF  +A+ Q K   
Sbjct: 110 SDEELRKQYEKIKAQFGNGKEYHVRHILVEKEADAKALIAKIKAGAKFEDVAKAQSKDTG 169

Query: 309 DISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSF 364
             + G    ++         + ++ +L KKG  T   +   FG+ I  + + + +   SF
Sbjct: 170 SAANGGDLDWANSSSYVPEFSAAMTNL-KKGQMTDTPVKTQFGWHIIELVDTRDAKIPSF 228

Query: 365 QEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394
           +EVK  +   M   +    E+ +   K L++ 
Sbjct: 229 EEVKPQLQQMMMGDQGWQREQFQAMMKSLKDK 260



 Score = 38.0 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 51/135 (37%), Gaps = 10/135 (7%)

Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
            + +   +E  +KA   ++   K G  F D+ K       +      +D   +  +  + 
Sbjct: 133 VRHILVEKEADAKA---LIAKIKAGAKFEDVAKAQSKDTGSAANGGDLDWANSSSYVPEF 189

Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM------NKDL 602
            + + +     +   P++    + + ++ +++   +   ++    L QMM       ++ 
Sbjct: 190 SAAMTNLKKGQMTDTPVKTQFGWHIIELVDTRDAKIPSFEEVKPQLQQMMMGDQGWQREQ 249

Query: 603 LDSVIAYLKSQYSVT 617
             +++  LK +  + 
Sbjct: 250 FQAMMKSLKDKAKIQ 264



 Score = 37.3 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 41/136 (30%), Gaps = 20/136 (14%)

Query: 22  FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
            + F +  +  A    + +     V  + +  +                   + ++ +  
Sbjct: 5   VLSFSLAAVLAAGSLPAFAQNAAVVNGKPISSAKVDK--------------LIASTGQPE 50

Query: 82  SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
           +  L  +  + L+    L Q     G+      V  ++        + N  +  VF   +
Sbjct: 51  TPELRDRARNMLIDRELLLQEANKRGITQRDD-VQEQLE-----QARLNVLAGAVFEDYV 104

Query: 142 AREGINEKEYIDHYTK 157
              G +++E    Y K
Sbjct: 105 RTHGASDEELRKQYEK 120


>gi|194289564|ref|YP_002005471.1| peptidylprolyl isomerase; exported protein [Cupriavidus taiwanensis
           LMG 19424]
 gi|193223399|emb|CAQ69404.1| putative Peptidylprolyl isomerase; putative exported protein
           [Cupriavidus taiwanensis LMG 19424]
          Length = 264

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 67/161 (41%), Gaps = 7/161 (4%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K    S+ EL+ +Y+K K ++ + +      ++   + +A      +K G KF   
Sbjct: 101 EDYVKTHGASDAELRKQYDKIKSQFGNGKEYHARHILVEKEADAKAIIAKIKGGAKFEDQ 160

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355
           A+   K     + G    ++         + ++  L KKG  T   +   FG+ I  + +
Sbjct: 161 AKAASKDPGSAANGGDLDWANSSSYVPEFSAAMTGL-KKGQMTDTPVKTQFGWHIIELVD 219

Query: 356 IKPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394
           ++ +   SF+EVK  +   +   +    E+ +   K L++ 
Sbjct: 220 VRDAKIPSFEEVKPQLTQMLMGDQNWQREQFQAMMKSLKDK 260


>gi|313636759|gb|EFS02412.1| foldase protein PrsA [Listeria seeligeri FSL S4-171]
          Length = 167

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 12/155 (7%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
              E   + S+  L+  Y+      + P+I TV  ++  ++ +A E  Q LK G+KF  L
Sbjct: 5   KATEANTDTSDKALKEYYKT-----WQPDI-TVSHILVADEAKAKEVEQKLKDGEKFADL 58

Query: 300 AEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A+E     +    G     + P   D +   + ++L  KGD +  +   +GY I  +   
Sbjct: 59  AKEYSTDTATKDNGGKLAPFGPGKMDPAFEKAAYALKNKGDISDPVKTQYGYHIIQMDE- 117

Query: 357 KPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKR 390
            P+   +F + KK +    ++    +E +++  K+
Sbjct: 118 -PATKTTFDKDKKAVKESYLQSQLTTENMQKTLKK 151


>gi|238650638|ref|YP_002916490.1| protein export protein prsA precursor [Rickettsia peacockii str.
           Rustic]
 gi|238624736|gb|ACR47442.1| protein export protein prsA precursor [Rickettsia peacockii str.
           Rustic]
          Length = 282

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  I+++    EY K        E   V  ++  +QKEA+     L KG  F +LAEE  
Sbjct: 116 KSNITDNMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANYIKTKLSKGGNFTKLAEELS 175

Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              +  S G      + +             F+L K  + +  +   FG+ I  V   KP
Sbjct: 176 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               + +E K  I N +      + + +   +  
Sbjct: 235 VPIPTKEEAKVTIDNILAAEVLKKYIADLEAKAN 268


>gi|281357480|ref|ZP_06243968.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis
           ATCC BAA-548]
 gi|281316083|gb|EFB00109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis
           ATCC BAA-548]
          Length = 361

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/370 (13%), Positives = 103/370 (27%), Gaps = 93/370 (25%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV-GLDKKILDNLVSGATL 99
             V  +G +K+     +        +++Q     V S  A  +      ++   V    L
Sbjct: 52  DVVAQIGDKKITKQEVLK------PLLAQMPDGKVPSMMADQLDNAAPGVIKWFVDQQIL 105

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +      G +         +        K  K   + F   L  +    ++Y +      
Sbjct: 106 EAAAAKAGFKPSKEHAQKAVKAQ---WEKVGKEDRERFAQMLQIQNKTVEQYQEEM---- 158

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                          SN  + +                  +   A    + A + +++++
Sbjct: 159 --------------VSNPEIQKQIALDE----------FLKTKIAEPTVTEAEMRKYYDE 194

Query: 220 YKD-NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF- 277
            K   +  P  +                                    P       ++  
Sbjct: 195 NKQKEFSTPADR------------------------------------PGTFRASHILIM 218

Query: 278 -----------PNQKEADEAFQSLKK-GKKFIQLAEEQGKSLS---DISLGSFSKEYIPD 322
                          + +     LKK   +F  LA E+    S     SL SFS + +  
Sbjct: 219 VDDKADDAAKKAALDQINAISAELKKDPARFEALAREKSGCPSKAKGGSLDSFSDKEMV- 277

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                ++  L K+G+ +  +   FGY I     ++     SF  VK+ + N ++  K  +
Sbjct: 278 PEFQKALEGL-KEGEISAPVKTQFGYHIIRRDKLQSEKVESFDNVKETVGNILKRQKQMQ 336

Query: 383 KVKEDYKRLE 392
              +   +LE
Sbjct: 337 AFTDYMAQLE 346


>gi|300691434|ref|YP_003752429.1| peptidylprolyl isomerase; exported protein [Ralstonia solanacearum
           PSI07]
 gi|299078494|emb|CBJ51147.1| Putative Peptidylprolyl isomerase; exported protein [Ralstonia
           solanacearum PSI07]
          Length = 265

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K    + DEL+ +YEK K ++ + +      ++   + +A      LK G  F ++
Sbjct: 102 EDYVKNSPTTEDELRKQYEKIKTQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEEI 161

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A  Q K     + G    ++         + ++  L K       +   FG+ +  + + 
Sbjct: 162 ARAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGETTQTPVKTQFGWHVIRLDDT 221

Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394
           + +   +F++VK  +   M   +     K +   K L E 
Sbjct: 222 RDAKIPAFEDVKPQLLEMMMGDQNWQRAKFQAMLKDLREK 261


>gi|298292757|ref|YP_003694696.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM
           506]
 gi|296929268|gb|ADH90077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM
           506]
          Length = 337

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 17/167 (10%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----------ADEAFQS 289
           EK  K  +++D ++  YE+  ++    E      ++F    +           A +    
Sbjct: 147 EKATKAALTDDAMKKTYEEAVKQQKPEEEVHARHILFRASPDDKEASAAAEKKAQDVEAR 206

Query: 290 LKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           LKKG+ F  LA+    +         LG F+KE +     A+  F++ K G+ +  +   
Sbjct: 207 LKKGEDFATLAKQLTEDPSGKQDGGDLGFFAKEQMV-PEFAEVAFAM-KPGEVSKPVKTQ 264

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           FG+ +  V   +   T +F EVK  I   +     +E V++  +  +
Sbjct: 265 FGWHVIKVEEKREKPTPTFDEVKPQIEQFLAQKAQAEAVQKTREAAK 311


>gi|154148403|ref|YP_001406775.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
 gi|153804412|gb|ABS51419.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
          Length = 271

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 13/163 (7%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGKK-- 295
            EK K I+++ ++++A Y+KNK K+  P       ++   + EA      LK  KG    
Sbjct: 102 EEKAKNIKVAENDIKAFYDKNKAKFMQPAQIKAGHILVKTEAEAKTIINDLKNFKGDDLV 161

Query: 296 --FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGY 348
             F   A ++    +      +LG FS+  +      D+  +L KKG+ +   +   FGY
Sbjct: 162 KNFAITAAQKSLEPAARQTGGALGWFSEHQMVKP-FYDAAKAL-KKGEISLKPVKTQFGY 219

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            +    + K +   +F E K  I N ++  K  E + ++ K L
Sbjct: 220 HVILKEDAKDAHQATFSEAKPTIENILKQEKLKETITKEAKDL 262


>gi|330812129|ref|YP_004356591.1| peptidylprolyl isomerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380237|gb|AEA71587.1| putative peptidylprolyl isomerase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 438

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 65/394 (16%), Positives = 122/394 (30%), Gaps = 83/394 (21%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
           L +  L  G +      S    V  V    V  S       +    I+++ G        
Sbjct: 12  LMLGALFLGTAANAAVQSIDKVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGQPPPGV- 70

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
               LD+++L+ L+      Q  E  G+      +   +        + N  S D F + 
Sbjct: 71  ----LDQQVLERLIVENLQLQIGERSGIRITDEELNQAVGTI----AQRNNMSIDQFRAA 122

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           LAR+G++ ++  D   + +  + V                       + R          
Sbjct: 123 LARDGLSYEDARDQIRREMVISRV----------------------RQRR---------- 150

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
            V      S   +  +        +  E   ++ IL    E         + +Q+ Y + 
Sbjct: 151 -VAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPESANS-----EAIQSAYRQ- 203

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSK 317
                                 A + +Q LK+G  F Q+A  +     +L    +G    
Sbjct: 204 ----------------------AMDVYQQLKQGADFGQMAIAKSGSDNALEGGDMGWRKP 241

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------K 369
             +P       + ++A  GD T       G++I  V   +   T    EV          
Sbjct: 242 AQLP-PPFDRELSAMA-VGDITQPARTPGGFIILKVLEKRGGGTQVRDEVHVRHILIKPS 299

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
           +I ++    + +EK+ +  +  E+F  L  S  E
Sbjct: 300 EIRSEAETKRLAEKLYDRIEAGEDFAELAKSFSE 333



 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 100/308 (32%), Gaps = 44/308 (14%)

Query: 363 SFQEVKKDIANQ-----MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           S+++ +  I  +     +R  + +E+++   + ++ FLA      ++S    + +I +P 
Sbjct: 129 SYEDARDQIRREMVISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPT 188

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
            + A  +             Q L     FG+          AL  G   W +  +  P  
Sbjct: 189 PESANSEAIQSAYRQAMDVYQQLKQGADFGQMAIAKSGSDNALEGGDMGWRKPAQLPPPF 248

Query: 476 DRKLE------------------------------EVLTDVKKD---WKTVKTAEEVSSK 502
           DR+L                               +V  +V       K  +   E  +K
Sbjct: 249 DRELSAMAVGDITQPARTPGGFIILKVLEKRGGGTQVRDEVHVRHILIKPSEIRSEAETK 308

Query: 503 -ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
              + + +  + G++F ++ K+      +      ++  +         QV +   +   
Sbjct: 309 RLAEKLYDRIEAGEDFAELAKSFSEDPGSALNGGDLNWVDPNALVPEFRQVMADTPQGQL 368

Query: 562 CFPIENGLSYVVFKVTNSKVGPV---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
             P ++   + V +V   +         + + ++ L      + L + +  ++ +  V +
Sbjct: 369 SKPFKSPYGWHVLEVLGRRATDSTTQAREQQAMTVLRNRKYDEELQTWLRQIRDEAYVEI 428

Query: 619 HDNLIQRY 626
                 + 
Sbjct: 429 KLPGADQA 436


>gi|209517045|ref|ZP_03265893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
 gi|209502576|gb|EEA02584.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
          Length = 259

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 4/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K  + ++ E+ A Y    +     E   +  ++  N+++A +    +K G  F  L
Sbjct: 103 EDFVKNNQPTDAEITARYNALVKDAGGQEY-HLHHILVDNEQQAKDLIAKIKAGASFEDL 161

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    +S         AD+   L K       +H  FG+ I  V +I
Sbjct: 162 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKGQMTDTPVHTQFGWHIIRVDDI 221

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +       ++V+  I  Q++  K  
Sbjct: 222 RAVTPPPLEQVRAQIVQQIQQEKLQ 246



 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           ++  K L   +  G S ++++++        P     G D+   +  A     +      
Sbjct: 142 EQQAKDLIAKIKAGASFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFADAAT 195

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
                   D  V    G +  +++ +        LE+V   + +  +  K  
Sbjct: 196 HLQKGQMTDTPVHTQFG-WHIIRVDDIRAVTPPPLEQVRAQIVQQIQQEKLQ 246



 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G +F D+ K       +      +D ++ K +  +           
Sbjct: 142 EQQAKDLIAKI-KAGASFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P+     + + +V + +       ++  + + Q + ++ L +    L+    + 
Sbjct: 201 QMTDTPVHTQFGWHIIRVDDIRAVTPPPLEQVRAQIVQQIQQEKLQAFEENLRKNARIQ 259


>gi|15892803|ref|NP_360517.1| protein export protein prsA precursor [Rickettsia conorii str.
           Malish 7]
 gi|20138841|sp|Q92H91|PLP_RICCN RecName: Full=Parvulin-like PPIase; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase plp; AltName: Full=Rotamase plp;
           Flags: Precursor
 gi|15619985|gb|AAL03418.1| protein export protein prsA precursor [Rickettsia conorii str.
           Malish 7]
          Length = 282

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  I++     EY K        E   V  ++  +QKEA++    L KG  F +LAEE  
Sbjct: 116 KSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEELS 175

Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              +  S G      + +             F+L K  + +  +   FG+ I  V   KP
Sbjct: 176 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               + +E K  I N +      + + +   +  
Sbjct: 235 VPIPTKEEAKVTIDNILAAEVLKKYIADLEAKAN 268


>gi|223940711|ref|ZP_03632550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
 gi|223890638|gb|EEF57160.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
          Length = 373

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 124/393 (31%), Gaps = 74/393 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +V     ++  S    +        S + G  +   +     + KK+LD L+     
Sbjct: 48  DQVIVKGKGFELKQSQLDEAVSGVKANASAR-GQEIPPAQLEM--IQKKLLDRLIQIQLF 104

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
                D                      +  K   + F     R   +E         M 
Sbjct: 105 KAKATD------------------ADKAEGKKEGDNRFEMIKKRAP-SEDMLAKQLKTM- 144

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                            L ++       E  + + +      + +    S+  + +++  
Sbjct: 145 ----------------GLTVESLHSRLIEEATAEAV------LKSKVKISDDQVKKFYND 182

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
              ++  PE  R S+IL    +++   E+S D+ +A                        
Sbjct: 183 NPKDFEEPEQVRASHILISTSDQKTGSEMSEDQKKA-----------------------K 219

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKG 336
           +K+A++  +  K G+ F +LA+E  +       G    F +  +       + FSL +  
Sbjct: 220 KKQAEDLLKRAKAGEDFGKLAKEFSEDPGSKDKGGEYIFPRGKMV-PEFEAAAFSL-QTN 277

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
             + ++   FGY I  +S   P   V   +V+ DI   +   +  + + + YK L++  +
Sbjct: 278 QVSDIVTTPFGYHIIKLSEKIPPHKVELAKVQDDIKGYLEKQEMEKVLPDFYKELKKE-S 336

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
               +DE  +  +    ++P           K 
Sbjct: 337 NVQILDEKLKALEDAPDEVPNFPAPTPKQDDKA 369


>gi|161619861|ref|YP_001593748.1| chaperone surA precursor [Brucella canis ATCC 23365]
 gi|254704953|ref|ZP_05166781.1| chaperone surA precursor [Brucella suis bv. 3 str. 686]
 gi|260567571|ref|ZP_05838041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 4
           str. 40]
 gi|261755654|ref|ZP_05999363.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 3
           str. 686]
 gi|161336672|gb|ABX62977.1| Chaperone surA precursor [Brucella canis ATCC 23365]
 gi|260157089|gb|EEW92169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 4
           str. 40]
 gi|261745407|gb|EEY33333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 3
           str. 686]
          Length = 331

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 90/249 (36%), Gaps = 17/249 (6%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q  R   E R +  +      +  I   +        ++ K+     E+ R   +  +  
Sbjct: 87  QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +     +IS+ +++A Y+K               ++   ++EA+   + L+ G K   LA
Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKSEDLA 202

Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +     G + S   LG FS+  +       + F+L         +   FGY +  + + +
Sbjct: 203 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408
                ++ +VK  I + +   +  E VK+             +E+ +    +  E S ++
Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321

Query: 409 KIVSIDLPL 417
                D P 
Sbjct: 322 DASEDDAPQ 330



 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/158 (8%), Positives = 53/158 (33%), Gaps = 3/158 (1%)

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
           +     D+++  +   V+   + +    +  ++A   +++  + G    D+ K       
Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKSEDLAKASSTDGT 210

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
            ++  +           +     F+         P++    Y V ++ + +       D+
Sbjct: 211 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270

Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
               +  ++ ++     +  L+    +   D  I++ +
Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308


>gi|297587540|ref|ZP_06946184.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516]
 gi|297574229|gb|EFH92949.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516]
          Length = 321

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 126/362 (34%), Gaps = 79/362 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLVSGA 97
              V  +G++ +         +       Q I F  N+E+ +     +  KI+D L++  
Sbjct: 24  DGAVAKIGKEYIYQKDVDKVMEDYKQYYGQDI-FNPNTEQGKEALKQIQPKIIDMLINEK 82

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
             ++ ++D  +E     V  E+ +      +      D F  +L +E + E+   +   K
Sbjct: 83  IANKLMKDKKIEVSDKEVQAEVDK---LQKQLGG--ADKFKEQLKKENMTEQALKEQIEK 137

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            L    +   F                                       PS+  +   F
Sbjct: 138 QLKNKKLSQQF----------------------------------EKDFKPSDKEIKDEF 163

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +K  D Y         +ILF   + + K  + + +L+A                      
Sbjct: 164 DKNLDTYT---QYNADHILFSGKDDKGK-NLDDAKLKA---------------------- 197

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLA 333
              + A++ ++ +K GK F ++A+ + +  S       LG F    +     +D++  + 
Sbjct: 198 -KSELANKTYEEVKDGKNFNEVAKAKSEDPSAKQNSGKLGDFLSSTMVK-EFSDALKKM- 254

Query: 334 KKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           K G+ +  +   FGY I      V+ +      + Q VK  I+N++   K  ++ ++  K
Sbjct: 255 KPGEVSKPVKTEFGYHIIKLNSKVTELDKMTDANKQNVKTAISNKIIQEKVQKEFEKQKK 314

Query: 390 RL 391
            +
Sbjct: 315 DM 316


>gi|66047852|ref|YP_237693.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
 gi|63258559|gb|AAY39655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
 gi|330970840|gb|EGH70906.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 442

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/423 (12%), Positives = 132/423 (31%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 33  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 87

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++  +  +   + +
Sbjct: 88  LQMGERSGIRVSDEELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 143

Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V                 + L  D  K    E   +  I++      +      A 
Sbjct: 144 IISRVRQRRVAERIQVSQQEVKNFLASDMGKAQLSEEFHLANILIATPDSASSDAIQAAA 203

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + + +  
Sbjct: 204 VKAKGIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPVGDVT 263

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            ++ A + +  ++
Sbjct: 264 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAQKIYDRIE 323

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F +LA+    + G +L+   L       +        + S   +G  +      +G
Sbjct: 324 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMSETPQGVLSKPFQTQYG 381

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + ++  A N +R  K  E+++   +++ +   +   +   ++
Sbjct: 382 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 439

Query: 407 REK 409
             +
Sbjct: 440 AAQ 442


>gi|86133089|ref|ZP_01051671.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
 gi|85819952|gb|EAQ41099.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
          Length = 544

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/377 (14%), Positives = 133/377 (35%), Gaps = 51/377 (13%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           ++ + F+++  + A  +      ++++G +K+  S F   +++ L          +++E 
Sbjct: 4   LILLLFIVF--TTASIAQKKDKVLITIGDEKIMVSEFKRVYEKNLD--------AIDNEE 53

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           A+ +   +K LD  ++     +   DI L      +   +                 + +
Sbjct: 54  AKDL---EKNLDLFINYKLKVKEAYDIKL----DTLSSYVKEM------------KTYRN 94

Query: 140 RLAREGINEKEYIDHYTKML---SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           +LA   + +  Y+    K     ++ +V    +    P         + Y +   +   +
Sbjct: 95  QLAAPYMQDSAYVSVLVKDAYFRTKNEVKAKHILIRTPKVATPKDTLKAYQKIMKIRDRI 154

Query: 197 LNNRHVPAIADPSNAVLTQWFEK------YKDNYRAPEYKRISYILFDVHEKEKKIEIS- 249
           L       +A+  +   +   +        K N       ++ Y   +     K  E+S 
Sbjct: 155 LKGEDFEKVAEEVSEDESARADAKSGRVGNKGNLGYFSAFKMVYPFENAAYTTKIDEVSM 214

Query: 250 --NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-----AFQSLKKGKKFIQLAEE 302
                      K      S     V  ++  ++    E      +  L+K ++F  LA +
Sbjct: 215 PFRTRFGYHILKVDGLRPSKGEVEVAHILITDKTAKGEEIINTVYNRLEKDEQFKMLARK 274

Query: 303 QGKSLSDISLGSFSKEY---IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
                   S G   + +   +      +  FSL K+G+++      FG+ I  +    P 
Sbjct: 275 YSDDTGSKSKGGKLRRFGSGVMVQPFDEVAFSLTKEGEYSKPFRTRFGWHIVQLIKKHP- 333

Query: 360 FTVSFQEVKKDIANQMR 376
              SF+E+KK++ +++R
Sbjct: 334 -VKSFEEMKKELTSKIR 349


>gi|229016515|ref|ZP_04173456.1| Foldase protein prsA 2 [Bacillus cereus AH1273]
 gi|229022723|ref|ZP_04179247.1| Foldase protein prsA 2 [Bacillus cereus AH1272]
 gi|228738535|gb|EEL89007.1| Foldase protein prsA 2 [Bacillus cereus AH1272]
 gi|228744782|gb|EEL94843.1| Foldase protein prsA 2 [Bacillus cereus AH1273]
          Length = 269

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 80/198 (40%), Gaps = 14/198 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248
           Y ++    +      S+  + +  EK K+ Y      A E  R+        +   K+ +
Sbjct: 41  YEMVAQDVITKKYKVSDDAVDKEVEKAKNQYGDQFKAALENNRLKDEKDFQDQIRFKLAL 100

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           +    Q+  EK+ + ++ PEI+    ++  ++ EA E  + L  G  F +LA+++ +   
Sbjct: 101 NEAIKQSVTEKDIKDHYKPEIK-ASHILVSDENEAKEIKKKLDTGASFEELAKQESQDSL 159

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              +   LG F    +       + + L K G  +  +    GY I  +++ K      +
Sbjct: 160 SKDNGGDLGYFRAGKMT-PEFEKAAYKL-KPGQISNPVKSPNGYHIIKLTDKKD--LEPY 215

Query: 365 QEVKKDIANQMRITKASE 382
            EVK  I   +   + ++
Sbjct: 216 DEVKGSIRKDLEEERIAD 233


>gi|239947926|ref|ZP_04699679.1| ppic-type ppiase domain protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922202|gb|EER22226.1| ppic-type ppiase domain protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 270

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 7/154 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  I++     EY K        E   V  ++  +QKEA++    L KG  F +LAEE  
Sbjct: 104 KSNITDKMFDDEYTKYVSNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEESS 163

Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              +  S G      + +             F+L K  + +  +   FG+ I  V   KP
Sbjct: 164 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 222

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               + +E K  I N +      + + +   + +
Sbjct: 223 VPIPTKEEAKITIDNILAAEVLKKYISDLEAKAD 256


>gi|86131509|ref|ZP_01050107.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
 gi|85817954|gb|EAQ39122.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
          Length = 713

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 80/589 (13%), Positives = 190/589 (32%), Gaps = 49/589 (8%)

Query: 30  LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
           L    F+    + V S+    +    F    + +        G   ++ RA +      +
Sbjct: 31  LDSGGFNADKQNRVASINGVNLDREDFATKVEAQTRRA----GANSSTTRAVNA-----V 81

Query: 90  LDNLVSGATLDQFIEDIGLEADHGR----VWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
            +  V+   L++  E++G++    R    +   +     F   D  FS       +A   
Sbjct: 82  WEQEVNRVLLEEQYEELGIQVGKDRTQELLKQALQNDVRFQDADGFFSEAKMQEFIATLK 141

Query: 146 INEK--------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
            ++          + +       +     +   G+  +    + A +       + Y+ +
Sbjct: 142 DSQNPGDYQSWLVFEESLRNQEKQEIYYNLVRAGVGATLKDGEVAYKLDNNTVDIQYVQM 201

Query: 198 NNRHVPAIADP-SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
               VP    P S   + ++   +KD ++  E + I ++ F      +       EL   
Sbjct: 202 LYTSVPDEEAPVSKDEIQEYVNDHKDEFQTEETRSIRFVKFVEEASLEDENALKAELSKL 261

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
             +   +  +  +                 F   ++ + F+         +  +    F 
Sbjct: 262 RNEYTARNGATGVTETF-----------AGFDKTEEIEDFL----IDNSDVPFVDR-WFF 305

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK--PSFTVSFQEVKKDIANQ 374
           K+ +P  + AD++F+L K G + P   G +   ++ V +++  P    +   +  D    
Sbjct: 306 KKDLPSTN-ADTLFALGKGGVYGPYKDGRYMN-LSRVVDVRKMPDSVKT-SHILIDFQGA 362

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
           +  T          +  E+   L  S+  + +R K    DL   +F+           + 
Sbjct: 363 VTNTARGPIPSSATRSKEDAKKLADSLLSVLKRNKNKFEDLAK-EFSTDKSNSDNGGDLD 421

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR-DRKLEEVLTDVKKDWKTV 493
           Y+   LF    +D  +  +        +     +   +  +  + + +V T VK+   + 
Sbjct: 422 YQNPNLFAAGYRDFIVDNNEGTIGIAETNFGYHVINIVDQKNVQDVIKVATVVKEILPSD 481

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN--ENKFFGYDGISQ 551
           KT   + +   +   E +    +F+ +    G ++    +I  MD     +      I  
Sbjct: 482 KTISNIYNTTQKF--ELAAAEGDFQTVATENGYAVRPVQRIRAMDETLPGEGAQRSVIQW 539

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
            F     +           Y+V +VT       +  +     +T ++  
Sbjct: 540 AFEEDTNVGDIKRFATNDGYIVAQVTRRTPAGTERVEDVSLQVTPIIRN 588



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/349 (16%), Positives = 114/349 (32%), Gaps = 24/349 (6%)

Query: 278 PNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKK 335
             +K AD     LK+ K KF  LA+E     S+   G       P+  +     F +   
Sbjct: 381 DAKKLADSLLSVLKRNKNKFEDLAKEFSTDKSNSDNGGDLDYQNPNLFAAGYRDFIVDNN 440

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
                +   +FGY + ++ + K        +V   +   +   K    +    ++ E   
Sbjct: 441 EGTIGIAETNFGYHVINIVDQK--NVQDVIKVATVVKEILPSDKTISNIYNTTQKFELAA 498

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           A G     ++         +  +    + + G+          ++   F +D  +     
Sbjct: 499 AEGD-FQTVATENGYAVRPVQRIRAMDETLPGEGAQ-----RSVIQWAFEEDTNVGDIKR 552

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
            A  DG Y+  Q+    PA   ++E+V   V    + +K AE + +K           G 
Sbjct: 553 FATNDG-YIVAQVTRRTPAGTERVEDVSLQVTPIIRNMKKAEIIKNKI---------SGS 602

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVV 573
              +I ++ G ++ T   ++         G +   +   F      V   PIE      V
Sbjct: 603 TLSEIAQSQGTTVKTAGAVSMNAPTIAGAGNEPKVVGAAFGLKEGEV-SSPIEGSRGVYV 661

Query: 574 FKVTNSKVGP-VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
            +V      P ++    F     Q     +   V+  LK    +  +  
Sbjct: 662 IEVVKVSEAPGLENYAAFAGQQAQKSRAAVSTKVLNALKEAADIEDNRA 710


>gi|296157842|ref|ZP_06840676.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           Ch1-1]
 gi|295892088|gb|EFG71872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           Ch1-1]
          Length = 259

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 4/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K    ++ E+ A Y    +     E   +  ++  N+++A +    +K G  F  L
Sbjct: 103 EDFVKNNTPTDAEVTARYNALIKDAGGKEY-HLHHILVDNEQQAKDLIAKIKAGASFEDL 161

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A +  K       G    +S         AD+   L K       +H  FG+ I  V ++
Sbjct: 162 ARQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKGQMTDTPVHTQFGWHIIRVDDV 221

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +       ++V+  I  Q++  K  
Sbjct: 222 RNITPPPLEQVRPQIVQQIQQEKLQ 246



 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 41/119 (34%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G +F D+ +       +      +D ++ K +  +           
Sbjct: 142 EQQAKDLIAKI-KAGASFEDLARQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P+     + + +V + +       ++    + Q + ++ L +    L+    + 
Sbjct: 201 QMTDTPVHTQFGWHIIRVDDVRNITPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           ++  K L   +  G S ++++R+        P     G D+   +  A     +      
Sbjct: 142 EQQAKDLIAKIKAGASFEDLARQYS----KDPGSGKNGGDLDWSDPKAY--VPEFADAAT 195

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
                   D  V    G +  +++ +        LE+V   + +  +  K  
Sbjct: 196 HLQKGQMTDTPVHTQFG-WHIIRVDDVRNITPPPLEQVRPQIVQQIQQEKLQ 246


>gi|228938272|ref|ZP_04100886.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228971151|ref|ZP_04131783.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977759|ref|ZP_04138144.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407]
 gi|228781967|gb|EEM30160.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407]
 gi|228788577|gb|EEM36524.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821408|gb|EEM67419.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326938780|gb|AEA14676.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 289

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 91/246 (36%), Gaps = 39/246 (15%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I ++E+ D       +  +  M +  +          K +  E++ VD            
Sbjct: 35  ITKEEFYDQMKTQAGKQVLNNMVMEKVL--------IKNYKVEDKDVDKKF--------- 77

Query: 206 ADPSNAVLTQWFEK----YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
               + +  Q+ ++     K      E  + S       EK  +  I++ +++A++E  K
Sbjct: 78  ----DEMKKQYGDQFDTLMKQQGIKEETIKNSVRAQLAQEKAVEQSITDKDVKAKFEDYK 133

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317
           ++           ++  +++ A +    L +GK F +LA++  +          LG F  
Sbjct: 134 KEI------KASHILVKDEETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGP 187

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             +      ++   L KKG+ +  +   FGY I  V++       +F + K DI   +  
Sbjct: 188 GKMVK-EFEEAAQKL-KKGEVSEPVKTQFGYHIIKVTDNHADA--TFDKAKADIKKSLAQ 243

Query: 378 TKASEK 383
            K  + 
Sbjct: 244 EKTQDA 249



 Score = 37.3 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 10/130 (7%)

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
           +D   +++ +    K +E  K++++ LA G S +E++++    +         G    GK
Sbjct: 130 EDYKKEIKASHILVKDEETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGK 189

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
            V       Q L +    +   ++          Y  +++ ++    D   ++   D+KK
Sbjct: 190 MVKEFEEAAQKLKKGEVSEPVKTQF--------GYHIIKVTDNH--ADATFDKAKADIKK 239

Query: 489 DWKTVKTAEE 498
                KT + 
Sbjct: 240 SLAQEKTQDA 249


>gi|330980962|gb|EGH79065.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 442

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/423 (12%), Positives = 132/423 (31%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 33  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 87

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++  +  +   + +
Sbjct: 88  LQMGERSGIRVSDEELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 143

Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V                 + L  D  K    E   +  I++      +      A 
Sbjct: 144 IISRVRQRRVAERIQVSQQEVKNFLASDMGKAQLSEEFHLANILIATPDSASSDAIQAAA 203

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + + +  
Sbjct: 204 VKAKGIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPVGDVT 263

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            ++ A++ +  ++
Sbjct: 264 PPARTPGGFIILKLLEKRGGQGEAQMRDEVHVRHILIKPSEIRNEAETKRLAEKIYDRIQ 323

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F +LA+    + G +L+   L       +        + S   +G  +      +G
Sbjct: 324 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMSETPQGVLSKPFQTQYG 381

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   +        + ++  A N +R  K  E+++   +++ +   +   +   ++
Sbjct: 382 WHVLEVLGRRSKDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 439

Query: 407 REK 409
             +
Sbjct: 440 AAQ 442


>gi|94264357|ref|ZP_01288149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
           proteobacterium MLMS-1]
 gi|93455251|gb|EAT05464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
           proteobacterium MLMS-1]
          Length = 335

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/359 (12%), Positives = 114/359 (31%), Gaps = 74/359 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +  S            + Q+       +        +++L  ++     
Sbjct: 38  DRVVAEVNGEIITMSELEREMAGVEQQVLQQAPAADREQVLAEA--RQQVLSGMIDRLLA 95

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+      V   IA+       DN+ + +   + +AR   + + Y       +
Sbjct: 96  RQQADRLGIRVGEREVDEAIAQI----LADNRITMEELEAEIARHHGSMENYRRDLQTQI 151

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            ++ ++ +                                  V          + +++++
Sbjct: 152 LQSRLLSL---------------------------------EVRERVVIPERRIKEYYQQ 178

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +     +PE    +Y +    +        +DE +                         
Sbjct: 179 HHQEQTSPEE---AYHIL---QIGFNWPPGDDEARE----------------------QA 210

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +++A+E  +  ++G  F +LA        + +D  LG F K+ +  + L        + G
Sbjct: 211 RRQAEEIHRQARQGADFRELARRYSDLPSARNDGDLGVFQKDELAGIMLEH--IPELEPG 268

Query: 337 DFTPVIHGSFGYVIAHVSNIKPS--FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           + + ++  + GY    + + +     T S++E+K  I  ++      E+  +  K L E
Sbjct: 269 EISTILETAAGYQFFKLLSNQGELRATGSYEELKGKIREKLYQQALEEQFSKWVKELRE 327


>gi|154250196|ref|YP_001411021.1| hypothetical protein Fnod_1521 [Fervidobacterium nodosum Rt17-B1]
 gi|154154132|gb|ABS61364.1| hypothetical protein Fnod_1521 [Fervidobacterium nodosum Rt17-B1]
          Length = 328

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 68/389 (17%), Positives = 123/389 (31%), Gaps = 90/389 (23%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE--LGMISQKIGF 73
           IFLV+L   F+           +    V  V  + +    +      +  L  I      
Sbjct: 6   IFLVLLISFFVF----------AQQEIVAVVNGRSITMDEWNREANVQKLLLEIQNSNET 55

Query: 74  VVNSERARSVGL------DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
                     GL        K+LD L+      QF E + ++ D   V  ++        
Sbjct: 56  FYQILMTTQEGLVLIEKYKLKVLDTLIRKIAFIQFAESLKVQPDPQTVKNDV-------- 107

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
                 +++    L    + E +  D+  +                   L + Q + F  
Sbjct: 108 -----DNEI-KKMLVDLKMTETQLNDYLMQ-------------------LGMGQLEDFRQ 142

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
           +        L+  +V             ++ K                            
Sbjct: 143 KLYLQRTYSLSLANVYT-----------YYLKN-------------------------AT 166

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           +S +E++A YEKNK KY  P    +      ++  AD   Q + K     +++++   S 
Sbjct: 167 VSEEEIKAYYEKNKAKYTVPTQYDLLIFKAKDKAMADSIRQDVAKNISVEEISKKYNLSP 226

Query: 308 SDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
                G  ++  +  +      I +   KG   P    +  Y I  V ++KP    S  E
Sbjct: 227 H--VNGLVTQGDMEKIPQNLWVIITSVSKGTILPAQLINNEYYIIRVRDVKPGSQKSLDE 284

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFL 395
           VK++I  ++  TK  E   +  K  E+FL
Sbjct: 285 VKEEIKKELVSTKQKEVKDKVAKDFEDFL 313



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 24/163 (14%)

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
            + I KA +K       + + +A   S++EIS++  +      LV          ++  I
Sbjct: 190 DLLIFKAKDKA--MADSIRQDVAKNISVEEISKKYNLSPHVNGLVTQG-------DMEKI 240

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
           P    ++     K   L       L +  Y  +++++  P   + L+EV  ++KK+  + 
Sbjct: 241 PQNLWVIITSVSKGTIL----PAQLINNEYYIIRVRDVKPGSQKSLDEVKEEIKKELVST 296

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           K  E              K  K+F D  K     +   +QI +
Sbjct: 297 KQKEV-----------KDKVAKDFEDFLKKSKIEIKYKSQIAK 328


>gi|296272150|ref|YP_003654781.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096325|gb|ADG92275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
           nitrofigilis DSM 7299]
          Length = 269

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 74/160 (46%), Gaps = 6/160 (3%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK----KGK 294
           +  +  K++ ++ E ++ Y+KNKEK+ +P+      ++   +KEA++    L     K  
Sbjct: 102 MQNEYAKVKATDAEEKSFYDKNKEKFKTPDTLEASHILVKTEKEANDIIAKLNIAKNKKG 161

Query: 295 KFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            F +LA++     +    G   K          + +  +L K       +   FGY + +
Sbjct: 162 SFEELAKKFSIGPTKTKGGYLGKFQAKQMVPEFSKAALALKKGEYTKKPVKTQFGYHVIY 221

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + N + S  + F +VK +IA  +   K  + +KE+ ++L+
Sbjct: 222 LENKEVSQILPFDKVKANIAKMIVQEKYGKMIKEEVEKLK 261


>gi|289676168|ref|ZP_06497058.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae FF5]
 gi|330938460|gb|EGH42067.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 440

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/423 (12%), Positives = 132/423 (31%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 31  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++  +  +   + +
Sbjct: 86  LQMGERSGIRVSDEELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141

Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V                 + L  D  K    E   +  I++      +      A 
Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDMGKAQLSEEFHLANILIATPDSASSDAIQAAA 201

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + + +  
Sbjct: 202 VKAKGIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPVGDVT 261

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            ++ A++ +  ++
Sbjct: 262 PPARTPGGFIILKLLEKRGGQGEAQMRDEVHVRHILIKPSEIRNEAETKRLAEKIYDRIQ 321

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F +LA+    + G +L+   L       +        + S   +G  +      +G
Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMSETPQGVLSKPFQTQYG 379

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   +        + ++  A N +R  K  E+++   +++ +   +   +   ++
Sbjct: 380 WHVLEVLGRRSKDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437

Query: 407 REK 409
             +
Sbjct: 438 AAQ 440


>gi|206968099|ref|ZP_03229055.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH1134]
 gi|229177678|ref|ZP_04305055.1| Foldase protein prsA 2 [Bacillus cereus 172560W]
 gi|206737019|gb|EDZ54166.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH1134]
 gi|228605868|gb|EEK63312.1| Foldase protein prsA 2 [Bacillus cereus 172560W]
          Length = 285

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 80/203 (39%), Gaps = 14/203 (6%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248
           Y ++    +       +  + +  EK K  Y     +  E   +       ++ + K+ +
Sbjct: 57  YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENNGLKDEEDFKNQIKFKLAM 116

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           +    ++  EK+ + ++ PEI+    ++  ++ EA E    L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L   G  +  +  S GY +  +++ K      +
Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231

Query: 365 QEVKKDIANQMRITKASEKVKED 387
            EVK  I   +   + ++ V   
Sbjct: 232 DEVKNSIRKNLEEERTADPVFSK 254



 Score = 40.0 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  +TA+ V SK  +L+ E  K+
Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263


>gi|255020576|ref|ZP_05292639.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [Acidithiobacillus caldus ATCC 51756]
 gi|254969961|gb|EET27460.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [Acidithiobacillus caldus ATCC 51756]
          Length = 479

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/424 (12%), Positives = 109/424 (25%), Gaps = 78/424 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+    +  E      L +++L  ++     
Sbjct: 74  DKVVAVVNDDIITSLQLAQRVAAIRARLQQQDPNALPPEEV----LRRQVLQQMILQDVE 129

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G++ D   +   I                          +   +      +  
Sbjct: 130 LQIAKRAGIKVDQATLDQAIGNIA------------------RANNLTPDQLRQALAQQ- 170

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI-VLNNRHVPAIADPSNAVLTQWFE 218
                                   +F  + R    +  L  + V +        +  +  
Sbjct: 171 -------------------GQSWTQFEDDLRDRILVDRLTQQEVESRIHIGPDEVKTFAR 211

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + K+        +  +I    +     I                                
Sbjct: 212 QLKELGGVSFDLQQIFIPLPDNPTPDAIS------------------------------A 241

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            +++A E    L+ G  F +LA E      +L    LG      +P  +++ ++ SL K 
Sbjct: 242 ARRQAQEIRDRLEAGASFSRLAAEVSSSRDALQGGRLGWVKAAELP-PAISQTLMSL-KP 299

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G+ +PVI G  G+ I  V + K       +     I  +       ++ +   + +E  L
Sbjct: 300 GEISPVIPGPTGFHIFKVLDTKHEEPTVTEVKAAAIVLRASNGLQLQEAEARAQDIETAL 359

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
             GT   E++RR              G    GK    +      L            D  
Sbjct: 360 QGGTRFSELARRYSQDPSTAAAGGELGWVAPGKLPDELERTLLALQPGAVSSPVRVGDAI 419

Query: 456 VALP 459
             L 
Sbjct: 420 YILQ 423


>gi|148880128|sp|Q68WG0|PLP_RICTY RecName: Full=Parvulin-like PPIase; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase plp; AltName: Full=Rotamase plp;
           Flags: Precursor
          Length = 282

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 7/154 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  I++     EY K  +     E   V  ++  +QKEA+     L KG  F +LAEE  
Sbjct: 116 KSNITDKMFDDEYNKYVDNLKGKEQIKVAHILVKSQKEANTVKTKLSKGGNFNKLAEEFS 175

Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              +  S G      I +          +  F+L K  + +  +   FG+ I  V   KP
Sbjct: 176 LDKATASNGGVIGYIILNQSGQLVPEFENKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               + +E K  I N +      + + +   + +
Sbjct: 235 VPIPTKKEAKVTIDNILAAEILKKYISDLEAKAD 268


>gi|291297351|ref|YP_003508749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber
           DSM 1279]
 gi|290472310|gb|ADD29729.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber
           DSM 1279]
          Length = 620

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 66/450 (14%), Positives = 137/450 (30%), Gaps = 106/450 (23%)

Query: 13  VAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
           V  +   VL + F++  +         S  G +   +V  + V        ++ +L    
Sbjct: 8   VVAVIFGVLALAFVVGSVLLFTPQGQRSTQGKTE-FTVNGRPV--------YELDLARAQ 58

Query: 69  QKIGFVVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
           Q    +  + +     L +   +D ++    L Q      +    G +  E+       G
Sbjct: 59  QSDPILSTNPQGLLKNLAEVNFVDRMIVTTALLQDTAR--VRVSSGELKKELDTIKERFG 116

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
              K  +D F   L + G  + +  +     +     V                      
Sbjct: 117 LQKKEDYDRF---LTQVGYTDSQLRNELRDQIRINKRV---------------------- 151

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
                         +   A+P+   +  +FE  +D Y+  E                   
Sbjct: 152 ------------EEIQKKAEPTEEEMRLYFELNRDQYKNEERV----------------- 182

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGK- 305
                                     Q+V  ++  AD+ +  +   G  F  +A+   K 
Sbjct: 183 -----------------------QARQIVVDDKTTADKIYAEVTAPGADFAAIAKANSKL 219

Query: 306 -SLSDISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +    +LG+ + +  P          ++A+++F L + G  +  I     + I  V   
Sbjct: 220 NAEQGGALGAQAGQSEPGPVTRVVFPNAVAEAVFKL-RDGQISKPIEAGGRFYIVKVEKY 278

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
            P+  V F+EVK  +    +  K    ++   + L     +  +     + E  V   + 
Sbjct: 279 LPAGDVKFEEVKDRVKEDAKRIKGQGALEAYIEELRAKANVKFAEGSTYKFENPVVAKVG 338

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
             +    +V  + V A P   QLL +  G+
Sbjct: 339 DTEIKLTEVT-QSVFANPQVPQLLQQGLGE 367



 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 78/532 (14%), Positives = 165/532 (31%), Gaps = 85/532 (15%)

Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
            + E  ++D      +                  LD  K  +   +  DY          
Sbjct: 74  NLAEVNFVDRMIVTTALLQDTARVRVSSGELKKELDTIKERFGLQKKEDY-----DRFLT 128

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
               +++ L              E +    I   V E +KK E + +E++  +E N+++Y
Sbjct: 129 QVGYTDSQLRN------------ELRDQIRINKRVEEIQKKAEPTEEEMRLYFELNRDQY 176

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGK--SLSDISLGSFSKEYIP 321
            + E     Q+V  ++  AD+ +  +   G  F  +A+   K  +    +LG+ + +  P
Sbjct: 177 KNEERVQARQIVVDDKTTADKIYAEVTAPGADFAAIAKANSKLNAEQGGALGAQAGQSEP 236

Query: 322 DV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
                     ++A+++F L + G  +  I     + I  V    P+  V F+EVK  +  
Sbjct: 237 GPVTRVVFPNAVAEAVFKL-RDGQISKPIEAGGRFYIVKVEKYLPAGDVKFEEVKDRVKE 295

Query: 374 QMRITKASEKVKEDYKRLEEF----LALGTSMD-EISRREKIVSIDLPLVDFAGKDVKGK 428
             +  K    ++   + L        A G++   E     K+   ++ L +         
Sbjct: 296 DAKRIKGQGALEAYIEELRAKANVKFAEGSTYKFENPVVAKVGDTEIKLTEVTQSVFANP 355

Query: 429 EVAAIP-----------YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           +V  +            +  Q L ++  ++       T+    G   +    + +    +
Sbjct: 356 QVPQLLQQGLGELAVQFFMPQTLEQLISREAAYQFAQTL----GQPFFGSKSDVVAQAQQ 411

Query: 478 --------KLEEVLT-----------DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
                      EV                   + V   +E  +KA+       K GK   
Sbjct: 412 WKTRDITVTEAEVRRYYDANLANFTIPASAKVQAVNFKKEDKAKADAFRAAALKGGK-LE 470

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-------SGPVEMVKCFPIENGLSY 571
           D+ K    ++     +N                VF        GP+  V         S+
Sbjct: 471 DLAKANNGTVQDYGVVN-----PGTMPPVPNRLVFLTRGTFPKGPLGEVSEVVKLEDGSF 525

Query: 572 VVFKVTNSKV----GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
            V  V + K        + +++    +      +     +  ++    V  +
Sbjct: 526 QVLIVNDRKAEVLRPFEEVREEARQQVLASRRAEAAQKWLEEVRKAAKVENN 577



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 76/208 (36%), Gaps = 16/208 (7%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGKKFIQLAE 301
           + I ++  E++  Y+ N   +  P    V+ + F  + +A          KG K   LA+
Sbjct: 415 RDITVTEAEVRRYYDANLANFTIPASAKVQAVNFKKEDKAKADAFRAAALKGGKLEDLAK 474

Query: 302 EQGKSLSDISLGSFSKEYIPDVS-----LADSIFSLAKKGDFTPVIHGSFG-YVIAHVSN 355
               ++ D   G  +   +P V      L    F     G+ + V+    G + +  V++
Sbjct: 475 ANNGTVQD--YGVVNPGTMPPVPNRLVFLTRGTFPKGPLGEVSEVVKLEDGSFQVLIVND 532

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI------SRREK 409
            K      F+EV+++   Q+  ++ +E  ++  + + +   +  ++ ++          K
Sbjct: 533 RKAEVLRPFEEVREEARQQVLASRRAEAAQKWLEEVRKAAKVENNLQKVLTALTPKEEPK 592

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
                      +G   +     + P   
Sbjct: 593 QEQPKTNESQPSGNSSQPGTNQSTPANR 620



 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 99/295 (33%), Gaps = 29/295 (9%)

Query: 352 HVSNIKPSFTVSFQEVK-------KDIANQMRITKASEKVKEDYKR---LEEFLALGTSM 401
            V  I+     + +E++           N+ R+      V +         E  A G   
Sbjct: 150 RVEEIQKKAEPTEEEMRLYFELNRDQYKNEERVQARQIVVDDKTTADKIYAEVTAPGADF 209

Query: 402 DEISRRE-KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
             I++   K+ +     +       +   V  + +   +   VF   D        A   
Sbjct: 210 AAIAKANSKLNAEQGGALGAQAGQSEPGPVTRVVFPNAVAEAVFKLRDGQISKPIEA--G 267

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
           G +  V++++ +PA D K EEV   VK+D K +K    + +   +L  +         ++
Sbjct: 268 GRFYIVKVEKYLPAGDVKFEEVKDRVKEDAKRIKGQGALEAYIEELRAK--------ANV 319

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
               G++    N +     + +    +    VF+ P        ++ GL  +  +    +
Sbjct: 320 KFAEGSTYKFENPVVAKVGDTEIKLTEVTQSVFANPQ---VPQLLQQGLGELAVQFFMPQ 376

Query: 581 VGPVQEKDKFISYLTQMMNKDLLDS---VIAYLK--SQYSVTVHDNLIQRYLDGE 630
                   +      Q + +    S   V+A  +      +TV +  ++RY D  
Sbjct: 377 TLEQLISREAAYQFAQTLGQPFFGSKSDVVAQAQQWKTRDITVTEAEVRRYYDAN 431



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 11/157 (7%)

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK-DHTV 456
           G  ++++++       D  +V           +  +P +   L R      PL +    V
Sbjct: 466 GGKLEDLAKANNGTVQDYGVV-------NPGTMPPVPNRLVFLTRGTFPKGPLGEVSEVV 518

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            L DGS+  + + +      R  EEV  + ++     + AE       + V + +K   N
Sbjct: 519 KLEDGSFQVLIVNDRKAEVLRPFEEVREEARQQVLASRRAEAAQKWLEE-VRKAAKVENN 577

Query: 517 FRDIGKNL--GASLLTTNQINRMDNENKFFGYDGISQ 551
            + +   L                  +      G +Q
Sbjct: 578 LQKVLTALTPKEEPKQEQPKTNESQPSGNSSQPGTNQ 614


>gi|328465489|gb|EGF36718.1| protein secretion PrsA (post-translocation molecular chaperone)
           [Listeria monocytogenes 1816]
          Length = 261

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 84/238 (35%), Gaps = 27/238 (11%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224
                 +   L +A +  + N  V  +    + +      +   +   ++KY++ Y    
Sbjct: 30  TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSF 88

Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                     +    + + Y L      E  + +S  +L+  Y+  +          V  
Sbjct: 89  ESTLSSNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDIT------VRH 142

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331
           ++  ++  A E    LK G+KF  LA+E     +  + G     + P   D +   + ++
Sbjct: 143 ILVDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYA 202

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFT--VSFQEVKKD-IANQMRITKASEKVKE 386
           L  K D + ++  ++GY +  +       T       VK   I +Q+        +K+
Sbjct: 203 LENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIESQLTTENMIAALKK 260


>gi|169830779|ref|YP_001716761.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169637623|gb|ACA59129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 297

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/360 (11%), Positives = 87/360 (24%), Gaps = 106/360 (29%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
                  TV  V  + +               +  ++G              ++ L  L+
Sbjct: 32  GRSGDVETVAVVNGEPISRDEL-------YAEMYAQMG--------------QQTLQELI 70

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
           +   + Q     G+E     V   +        +    S + F   L   G+ +K+    
Sbjct: 71  TRKLIIQEGRAQGVEISDADVQTRLDEV----IESGFSSREEFQEALKAYGLEQKDLEQQ 126

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
               L    V+G                                            A + 
Sbjct: 127 IRVQLIVEGVLG-------------------------------------KQIQLDEAEVK 149

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           ++FE  +  +  PE                                              
Sbjct: 150 EYFEANRKRFGQPESLE----------------------------------------ARH 169

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFS 331
           +V   ++EA+     L  G  F  LA E+                +      +   ++F 
Sbjct: 170 IVLKTREEAESVRSELVSGADFAVLAREKSVDPLTAGGGGGLGTIRYGELIPAWQKALFG 229

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + + G    V+    G+ +  +    P+    F +V+  +  ++   + ++        L
Sbjct: 230 M-ETGLVNEVLETPSGFHVVEILEKHPAVEPVFADVEAKVRRELTEKEITQLYPAWVDSL 288


>gi|157964715|ref|YP_001499539.1| protein export protein prsA precursor [Rickettsia massiliae MTU5]
 gi|157844491|gb|ABV84992.1| Protein export protein prsA precursor [Rickettsia massiliae MTU5]
          Length = 282

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 7/154 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  I++     EY K        E   V  ++  +QKEA++    L KG  F +LAEE  
Sbjct: 116 KSNITDKMFDDEYSKYVGNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEELS 175

Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              +  S G      + +             F+L K  + +  +   FG+ I  V   KP
Sbjct: 176 LDKASASNGGVVGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               + +E K  I N +      + + +   + +
Sbjct: 235 VPIPTKEEAKVTIDNILAAEVLKKYISDLEAKAD 268


>gi|34581487|ref|ZP_00142967.1| protein export protein prsA precursor [Rickettsia sibirica 246]
 gi|28262872|gb|EAA26376.1| protein export protein prsA precursor [Rickettsia sibirica 246]
          Length = 282

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  I++     EY K        E   V  ++  +QKEA++    L KG  F +LAEE  
Sbjct: 116 KSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEELS 175

Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              +  S G      + +             F+L K  + +  +   FG+ +  V   KP
Sbjct: 176 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHVIKVLEKKP 234

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               + +E K  I N +      + + +   +  
Sbjct: 235 VPIPTKEEAKVTIDNILAAELLKKYIADLEAKAN 268


>gi|165933466|ref|YP_001650255.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str.
           Iowa]
 gi|165908553|gb|ABY72849.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str.
           Iowa]
          Length = 282

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  I++     EY K        E   V  ++  +QKEA++    L KG  F +LAEE  
Sbjct: 116 KSNITDKMFDDEYNKYVVNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEELS 175

Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              +  S G      + +             F+L K  + +  +   FG+ I  V   KP
Sbjct: 176 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               + +E K  I N +      + + +   +  
Sbjct: 235 VPIPTKEEAKVTIDNILAAEILKKYIADLEAKAN 268



 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 6/136 (4%)

Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENK 542
           K+  K      +   +AN +  + SK G NF  + + L     + +    +     N+  
Sbjct: 138 KEQIKVAHILVKSQKEANDIKTKLSKGG-NFTKLAEELSLDKASASNGGVIGYILLNQPG 196

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
               +   + F+  V  V   P++    + + KV   K  P+  K++    +  ++  ++
Sbjct: 197 QLVPEFEKKAFALKVNEVST-PVKTDFGWHIIKVLEKKPVPIPTKEEAKVTIDNILAAEI 255

Query: 603 LDSVIAYLKSQYSVTV 618
           L   IA L+++ +V +
Sbjct: 256 LKKYIADLEAKANVKI 271


>gi|228906899|ref|ZP_04070766.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 200]
 gi|228852647|gb|EEM97434.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 200]
          Length = 285

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 81/203 (39%), Gaps = 14/203 (6%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248
           Y ++    +       +  + +  EK K  Y     +  E  R+       ++ + K+ +
Sbjct: 57  YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENNRLKDEEDFKNQIKFKLAM 116

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           +    ++  EK+ + ++ PEI+    ++  ++ EA E    L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKNKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F+   +       + + L   G  +  +  S GY +  +++ K      +
Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231

Query: 365 QEVKKDIANQMRITKASEKVKED 387
            E+K  I   +   + ++ V   
Sbjct: 232 DEIKNSIRKNLEEERTADPVFSK 254



 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K ++  L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKNKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G          +     +  +     +   +     Y  +++ +      +  +E+   
Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEIKNS 237

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           ++K+ +  +TA+ V SK  +L+ E  K+
Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263


>gi|168185280|ref|ZP_02619944.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Bf]
 gi|237793360|ref|YP_002860912.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Ba4
           str. 657]
 gi|182671671|gb|EDT83632.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Bf]
 gi|229264108|gb|ACQ55141.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Ba4
           str. 657]
          Length = 247

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 5/138 (3%)

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFS 316
           NKE++ + E+ T   ++  +++EA+  ++ +K G  F + AE+  K  S     SLG+F+
Sbjct: 106 NKEEFRTQELITARHILVDSEEEANNIYEEIKNGLDFSEAAEKYSKCPSKAQGGSLGTFT 165

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           +  +       ++   A+    T  I   FGY +  V NIK S    F EVK  I N++ 
Sbjct: 166 RGQMV-PEFEKAVLE-AEVDKVTQAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKLL 223

Query: 377 ITKASEKVKEDYKRLEEF 394
             K +++  E  + L + 
Sbjct: 224 QEKQNQQYNEFTQNLRDK 241


>gi|148378054|ref|YP_001252595.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|153931321|ref|YP_001382453.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936847|ref|YP_001386006.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
           str. Hall]
 gi|153940453|ref|YP_001389411.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F
           str. Langeland]
 gi|168181156|ref|ZP_02615820.1| peptidil-prolyl isomerase family protein [Clostridium botulinum
           NCTC 2916]
 gi|170757604|ref|YP_001779674.1| peptidil-prolyl isomerase family protein [Clostridium botulinum B1
           str. Okra]
 gi|226947272|ref|YP_002802363.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A2
           str. Kyoto]
 gi|148287538|emb|CAL81602.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           A str. ATCC 3502]
 gi|152927365|gb|ABS32865.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|152932761|gb|ABS38260.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
           str. Hall]
 gi|152936349|gb|ABS41847.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F
           str. Langeland]
 gi|169122816|gb|ACA46652.1| peptidil-prolyl isomerase family protein [Clostridium botulinum B1
           str. Okra]
 gi|182668005|gb|EDT79984.1| peptidil-prolyl isomerase family protein [Clostridium botulinum
           NCTC 2916]
 gi|226843846|gb|ACO86512.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A2
           str. Kyoto]
 gi|295317521|gb|ADF97898.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F
           str. 230613]
          Length = 247

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 5/138 (3%)

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFS 316
           NKE++ + E+ T   ++  +++EA+  ++ +K G  F + AE+  K  S     SLG+F+
Sbjct: 106 NKEEFRTQELITARHILVDSEEEANNIYEEIKNGLDFSEAAEKYSKCPSKAQGGSLGTFT 165

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           +  +       ++   A+    T  I   FGY +  V NIK S    F EVK  I N++ 
Sbjct: 166 RGQMV-PEFEKAVLE-AEVDKVTQAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKLL 223

Query: 377 ITKASEKVKEDYKRLEEF 394
             K +++  E  + L + 
Sbjct: 224 QEKQNQQYNEFTQNLRDK 241


>gi|295676529|ref|YP_003605053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
 gi|295436372|gb|ADG15542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
          Length = 259

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 4/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K  + ++ E+ A Y    +     E   +  ++  N+++A +    +K G  F  L
Sbjct: 103 EDFVKNNQPTDAEVTARYNALVKDAGGKEF-HLHHILVDNEQQAKDLIAKIKAGASFEDL 161

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A +  K       G    +S         AD+   L K       +H  FG+ I  V +I
Sbjct: 162 ARQYSKDPGSGKNGGDLDWSDPKAYVPEFADAAAHLQKGQMTDTPVHTQFGWHIIRVDDI 221

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +       ++V+  I  Q++  K  
Sbjct: 222 RAVTPPPLEQVRAQIVQQIQQEKLQ 246



 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G +F D+ +       +      +D ++ K +  +           
Sbjct: 142 EQQAKDLIAKI-KAGASFEDLARQYSKDPGSGKNGGDLDWSDPKAYVPEFADAAAHLQKG 200

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P+     + + +V + +       ++  + + Q + ++ L +    L+    + 
Sbjct: 201 QMTDTPVHTQFGWHIIRVDDIRAVTPPPLEQVRAQIVQQIQQEKLQAFEENLRKNAKIQ 259



 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           ++  K L   +  G S ++++R+        P     G D+   +  A     +      
Sbjct: 142 EQQAKDLIAKIKAGASFEDLARQYS----KDPGSGKNGGDLDWSDPKAY--VPEFADAAA 195

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
                   D  V    G +  +++ +        LE+V   + +  +  K  
Sbjct: 196 HLQKGQMTDTPVHTQFG-WHIIRVDDIRAVTPPPLEQVRAQIVQQIQQEKLQ 246


>gi|30261271|ref|NP_843648.1| peptidylprolyl isomerase [Bacillus anthracis str. Ames]
 gi|47526434|ref|YP_017783.1| peptidylprolyl isomerase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184104|ref|YP_027356.1| peptidylprolyl isomerase [Bacillus anthracis str. Sterne]
 gi|65318541|ref|ZP_00391500.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Bacillus
           anthracis str. A2012]
 gi|165873055|ref|ZP_02217675.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0488]
 gi|167636140|ref|ZP_02394445.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0442]
 gi|167641190|ref|ZP_02399444.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0193]
 gi|170686825|ref|ZP_02878045.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0465]
 gi|170709056|ref|ZP_02899485.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0389]
 gi|177654451|ref|ZP_02936348.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0174]
 gi|190566537|ref|ZP_03019454.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis Tsiankovskii-I]
 gi|227815990|ref|YP_002815999.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. CDC 684]
 gi|229603142|ref|YP_002865693.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0248]
 gi|254682666|ref|ZP_05146527.1| peptidylprolyl isomerase [Bacillus anthracis str. CNEVA-9066]
 gi|254725460|ref|ZP_05187242.1| peptidylprolyl isomerase [Bacillus anthracis str. A1055]
 gi|254734085|ref|ZP_05191798.1| peptidylprolyl isomerase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740272|ref|ZP_05197964.1| peptidylprolyl isomerase [Bacillus anthracis str. Kruger B]
 gi|254753611|ref|ZP_05205647.1| peptidylprolyl isomerase [Bacillus anthracis str. Vollum]
 gi|254758708|ref|ZP_05210735.1| peptidylprolyl isomerase [Bacillus anthracis str. Australia 94]
 gi|46396833|sp|Q81TU1|PRSA2_BACAN RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|30254885|gb|AAP25134.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. Ames]
 gi|47501582|gb|AAT30258.1| peptidylprolyl isomerase PrsA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178031|gb|AAT53407.1| protein export protein prsA [Bacillus anthracis str. Sterne]
 gi|164711210|gb|EDR16767.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0488]
 gi|167510831|gb|EDR86223.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0193]
 gi|167528494|gb|EDR91259.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0442]
 gi|170126011|gb|EDS94909.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0389]
 gi|170669348|gb|EDT20091.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0465]
 gi|172080735|gb|EDT65817.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0174]
 gi|190562089|gb|EDV16057.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis Tsiankovskii-I]
 gi|227006723|gb|ACP16466.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. CDC 684]
 gi|229267550|gb|ACQ49187.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0248]
          Length = 285

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 30/206 (14%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240
           Y ++    +      S+  + +  +K K  Y             +     +         
Sbjct: 57  YEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLKDEADFKNQIKFKLSM 116

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
            K  K  ++  +++  Y+        PEI+    ++  ++ EA E  + L  G  F +LA
Sbjct: 117 NKAIKQSVTEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLDTGASFEELA 167

Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +++ + L        LG F    +       + + L K G  +  +    GY I  ++  
Sbjct: 168 KQESQDLLSKEKGGDLGYFHSGAMT-PEFETAAYKL-KIGQISDPVQSPNGYHIIKLTGK 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382
           K      + EVK  I   +   + ++
Sbjct: 226 KD--LKPYDEVKNSIRKNLEEERTAD 249



 Score = 36.9 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDTGASFEELAKQESQDLLSKEKGGDLGYFH 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G   A  P  E   +++            V  P+G Y  +++        +  +EV   
Sbjct: 188 SG---AMTPEFETAAYKL----KIGQISDPVQSPNG-YHIIKLTGKKD--LKPYDEVKNS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  +TA+
Sbjct: 238 IRKNLEEERTAD 249


>gi|169825702|ref|YP_001695860.1| hypothetical protein Bsph_0092 [Lysinibacillus sphaericus C3-41]
 gi|168990190|gb|ACA37730.1| Hypothetical yacD protein [Lysinibacillus sphaericus C3-41]
          Length = 323

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/382 (12%), Positives = 113/382 (29%), Gaps = 117/382 (30%)

Query: 6   RKASRTWVAKIFLVVL--FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
           R  ++  +A I +++L   + F+ W + +    +     V ++    +    ++ + ++ 
Sbjct: 24  RLKTKPALAVIAVLLLGNILWFIGWVIPNKGQEIGSDEQVAAIDGDVITRQEWMIAMEER 83

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
            G                     K+ L +LV+   +++  +   ++     +  E+A   
Sbjct: 84  YG---------------------KETLQSLVNETVMEKAAKTYKIKVTDQEIDLELALM- 121

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
                 +KF         A + +  ++        L    V+                  
Sbjct: 122 --RSAQDKFDT-------AMQNLTAEQLRQKIRSQLILDKVL------------------ 154

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
                                    +   + +++E+ +  Y      R ++         
Sbjct: 155 -------------------TKDVVINEESIEKYYEENQGLYNTKTSYRTNF--------- 186

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
                                          +    +K ADEA   LK G  F  LA E 
Sbjct: 187 -------------------------------IEVDAKKAADEALGELKNGSDFSVLAREI 215

Query: 304 GKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIK 357
               +  SLG         +   D ++ +++ S  K  + +       G Y I  V  I 
Sbjct: 216 SLDSASASLGGDVGFLTENQENVDPAIINAVKS-TKVNEVSKAFKLDNGHYGIVQVQEIL 274

Query: 358 PSFTVSFQEVKKDIANQMRITK 379
              + ++ +VK+ I  ++ + +
Sbjct: 275 EGQSFTYDDVKEHIERELALEQ 296


>gi|228951513|ref|ZP_04113619.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228808220|gb|EEM54733.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 290

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 21/224 (9%)

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK----YKDN 223
           F   M+ S            E   +    + ++ V       + +  Q+ ++     K  
Sbjct: 40  FYEQMKNSQTGKQTLNNMVMEKVLIKNYKVEDKDVDKKF---DEMKKQYGDQFDTLMKQQ 96

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
               E  + S       EK  +  I++ +L+A++E  K++           ++  +++ A
Sbjct: 97  GIKEETIKNSVRAQLAQEKAVEQSITDKDLKAKFEDYKKEI------KASHILVKDEETA 150

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
            +    L +GK F +LA++  +          LG F    +      ++   L KKG+ +
Sbjct: 151 KKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVK-EFEEAAQKL-KKGEVS 208

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             +   FGY I  V++       +F + K DI   +   K  + 
Sbjct: 209 EPVKTQFGYHIIKVTDNHADA--TFDKAKADIKKALVQEKTQDA 250



 Score = 38.0 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 10/130 (7%)

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
           +D   +++ +    K +E  K++++ LA G S +E++++    +         G    GK
Sbjct: 131 EDYKKEIKASHILVKDEETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGK 190

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
            V       Q L +    +   ++          Y  +++ ++    D   ++   D+KK
Sbjct: 191 MVKEFEEAAQKLKKGEVSEPVKTQF--------GYHIIKVTDNH--ADATFDKAKADIKK 240

Query: 489 DWKTVKTAEE 498
                KT + 
Sbjct: 241 ALVQEKTQDA 250


>gi|217964409|ref|YP_002350087.1| foldase protein PrsA [Listeria monocytogenes HCC23]
 gi|217333679|gb|ACK39473.1| foldase protein PrsA [Listeria monocytogenes HCC23]
 gi|307571026|emb|CAR84205.1| protein export protein (post-translocation molecular chaperone)
           [Listeria monocytogenes L99]
          Length = 295

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 91/258 (35%), Gaps = 27/258 (10%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224
                 +   L +A +  + N  V  +    + +      +   +   ++KY++ Y    
Sbjct: 30  TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSF 88

Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                     +    + + Y L      E  + +S  +L+  Y+  +          V  
Sbjct: 89  ESTLSSNNLTKTSFKENLEYNLLVQKATEANMNLSESKLKTYYKTWEPDIT------VRH 142

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331
           ++  ++  A E    LK G+KF  LA+E     +  + G     + P   D +   + ++
Sbjct: 143 ILVDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYA 202

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDY 388
           L  K D + ++  ++GY +  +       T + ++       I +Q+     +  +K++ 
Sbjct: 203 LENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIESQLTTENMTAALKKEL 262

Query: 389 KRLEEFLALGTSMDEISR 406
           K     +      D  + 
Sbjct: 263 KAANIDIKDSDLKDAFAD 280


>gi|320106474|ref|YP_004182064.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
           saanensis SP1PR4]
 gi|319924995|gb|ADV82070.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
           saanensis SP1PR4]
          Length = 275

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 89/229 (38%), Gaps = 20/229 (8%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL----TQWFEKYKDNYRAPEYK-----R 231
           +  R   E R +  ++L    V A    S+  +       +     +   P         
Sbjct: 39  RVLRQMAEQRILSAVLLRQLAVGAGITASDEEVDTRRRAQWGTSSASVCGPGVYLAIRDN 98

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV---------FPNQKE 282
           +    +       ++  S +E++  YE+++ ++  PE   V  ++            Q +
Sbjct: 99  LLIEKYSQWLTRHEMRPSREEVERYYEQHRVEFHQPERIEVAHIICNIDRPEDRAVAQSK 158

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             +A   L  GK F ++AE+       + LG  ++  + +    + +F+L K+ + + + 
Sbjct: 159 MQQAEMELNTGKPFQKVAEKYSDCGGKVPLGWITRGVMVE-EFDEVVFTL-KRNERSEIF 216

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              FG  IA V NIKP+     QEVK  IA +M   +  + V+      
Sbjct: 217 SSRFGLHIATVLNIKPAGYEPLQEVKLSIAKRMLEERRQKTVRLAVDEA 265


>gi|121607668|ref|YP_995475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
 gi|121552308|gb|ABM56457.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
          Length = 374

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 15/171 (8%)

Query: 239 VHEKEKKIEISNDELQAE----YEKNKEKYFS-PEIRTVEQLVFPNQKEADEAF-----Q 288
           + + +K  +  +  L A     Y    +K  + PE   V  L+   +     A       
Sbjct: 184 LADFDKSHQPDDAALLAYAQSTYRAMDDKQLTAPERIRVRHLLVKEKSPEKRALIEQWLA 243

Query: 289 SLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             K GK F QLA++  +          LG  +           ++ +L + GD + V+  
Sbjct: 244 EAKAGKDFAQLAKDHSEDNASAAQGGDLGFLTDGSTV-PPFEQALKALKEPGDLSEVVET 302

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           SFGY I  +   +P+    F E++  +  Q R     E   +D +RL+E +
Sbjct: 303 SFGYHIIRLEERRPAGLRGFDEMRDPLRLQARNALLREARAKDAQRLQEEM 353



 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 4/138 (2%)

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
             ++R     EK  E    +E++LA   +  + ++  K  S D       G      + +
Sbjct: 219 RIRVRHLLVKEKSPEKRALIEQWLAEAKAGKDFAQLAKDHSEDNASAAQGGDLGFLTDGS 278

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
            +P  EQ L  +    +P      V    G Y  ++++E  PA  R  +E+   ++   +
Sbjct: 279 TVPPFEQALKAL---KEPGDLSEVVETSFG-YHIIRLEERRPAGLRGFDEMRDPLRLQAR 334

Query: 492 TVKTAEEVSSKANQLVLE 509
                E  +  A +L  E
Sbjct: 335 NALLREARAKDAQRLQEE 352


>gi|309781979|ref|ZP_07676709.1| peptidyl-prolyl cis-trans isomerase family protein [Ralstonia sp.
           5_7_47FAA]
 gi|308919045|gb|EFP64712.1| peptidyl-prolyl cis-trans isomerase family protein [Ralstonia sp.
           5_7_47FAA]
          Length = 265

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 5/160 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K    + DEL  +Y+K K ++ + +      ++   + +A      LK G KF  +
Sbjct: 102 EDYVKNSPATEDELHKQYDKIKAQFGNGKEYHAHHILVDKEGDAKAIIAKLKAGAKFEDI 161

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           A+ Q K     + G       P   + +  +  +  KKG  T   +   FG+ +  + + 
Sbjct: 162 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGQITQTPVKTQFGWHVIRLDDT 221

Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394
           + +   S+++VK  +   M   +     K +   K L E 
Sbjct: 222 RDAKIPSYEDVKPQLLEMMMGDQNWQRSKFQAMLKDLREK 261


>gi|300775367|ref|ZP_07085229.1| possible peptidyl-prolyl cis-trans isomerase [Chryseobacterium
           gleum ATCC 35910]
 gi|300506107|gb|EFK37243.1| possible peptidyl-prolyl cis-trans isomerase [Chryseobacterium
           gleum ATCC 35910]
          Length = 717

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 91/642 (14%), Positives = 200/642 (31%), Gaps = 77/642 (11%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L  IR  S+ W+    + +  + FL+   S           +  V  +K+    F     
Sbjct: 4   LGQIR--SKPWLLMGVIALALLAFLVNPDSIDKVFGKNPDVLGKVNGEKITREEF----N 57

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG------RV 115
            +L ++ Q+       +     GL+++    LV    + Q  E +G E          + 
Sbjct: 58  DQLFVLQQQAEQQGRPK----NGLEEQAWQLLVQSKLIKQQFEKLGFEMTDDYFWNQIQY 113

Query: 116 WGEIARSPLFHGKDNKFS-HDVFVSRLAREGINEKEYID------HYTKMLSRTDVVGMF 168
               A++  F  +   F   ++       +  N + Y             L    V    
Sbjct: 114 DQMFAQNQQFFDEKGNFKTQELKKEIETLQNTNPQGYAQWLKTRKTIEYRLMARQVFTNL 173

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV--PAIADPSNAVLTQWFEKYKDNYRA 226
             G+       ++  +   +   +D++ ++          + +   L  + +K+   ++A
Sbjct: 174 SAGITTGKKEAEELMKQRDQLADIDFVKVDYAAYLQKTKINVTTQDLADYIKKHPVMFKA 233

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
              + I  + F           +  E+   Y                     +     E 
Sbjct: 234 EPSRNIGIVFFPSKPSAADDAAALKEITKLYSGG-----------------TDASGGTEN 276

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           FQ+ K    F+    +     +  +    +   +P  ++ D I S A  G          
Sbjct: 277 FQNTKNDSMFVTANSD-----APFNPQYLNPAQLP-PTIKDQITSAA-VGQTFGPYKEQD 329

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE---KVKEDYKRLEEFLALGTSMDE 403
            YV++ +   +PS +     + + I    + + A E   + KE  K+L + +        
Sbjct: 330 VYVVSKLVGKRPSDST----LSRHILIAFKGSPAGEGVTRTKEQAKKLADSI-GAIVKAT 384

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
            ++  + + +       A     G      P+  + L   +  ++P      V    G Y
Sbjct: 385 PAKFTEFLKLSSDPNSAAQGGSLGWTTPETPFVPEFL--AYLANNPKGATGVVETQFG-Y 441

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD---I 520
             + I++          +V   VK    +  T  E   K+ + + +   +GK+F D   I
Sbjct: 442 HIINIEDKKSGSMG--YKVANLVKAIKPSDATEAETDKKSRKFIQQV--QGKSFNDFVNI 497

Query: 521 GKNLGASLLTTNQINRMDNENKFFG----YDGISQVFSGP--VEMVKCFPIENGLSYVVF 574
            K             R + + +  G     D ++  F         + F ++     +V 
Sbjct: 498 AKKNNYQFSNPKAAKRFEGQLQGLGTEKDADILTWAFDKKRSKGDTELFTVDGTGDKIVV 557

Query: 575 KVTNSK----VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
            +   +      P   +D+    +   +    +   IA  K+
Sbjct: 558 YLNGKQEAGLADPESVRDQIEVIVKNKLAAKQISEKIAAAKA 599



 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 104/351 (29%), Gaps = 20/351 (5%)

Query: 276 VFPNQKEADEAFQSL--------KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           V   +++A +   S+         K  +F++L+ +   +    SLG  + E         
Sbjct: 363 VTRTKEQAKKLADSIGAIVKATPAKFTEFLKLSSDPNSAAQGGSLGWTTPETPFVPEFL- 421

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           +  +   KG  T V+   FGY I ++ + K        +V  ++   ++ + A+E   + 
Sbjct: 422 AYLANNPKGA-TGVVETQFGYHIINIEDKKSGSMG--YKV-ANLVKAIKPSDATEAETDK 477

Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
             R       G S ++     K  +        A +     +         +L   F K 
Sbjct: 478 KSRKFIQQVQGKSFNDFVNIAKKNNYQFSNPKAAKRFEGQLQGLGTEKDADILTWAFDKK 537

Query: 448 DPLSKDHTVAL-PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                     +   G  + V +     A     E V   ++   K    A+++S K    
Sbjct: 538 RSKGDTELFTVDGTGDKIVVYLNGKQEAGLADPESVRDQIEVIVKNKLAAKQISEKIAAA 597

Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
                    N   I K   A   +        +             F      +      
Sbjct: 598 KA------SNLDQIAKLFAAPKQSAQVNLLNPSVAGAMEPKVAGAAFGVAKGKLSNPVEG 651

Query: 567 NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
               YV+ K + +      +  +F   LTQ        + +  L+    + 
Sbjct: 652 GTGVYVLIKKSETVNKQPGDLKQFTESLTQRSAGMFGQAWMKSLQDNADIE 702


>gi|197119425|ref|YP_002139852.1| PpiC-type peptidylprolyl cis-trans isomerase [Geobacter
           bemidjiensis Bem]
 gi|197088785|gb|ACH40056.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           bemidjiensis Bem]
          Length = 325

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 18/201 (8%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E  +   R    + +    + +    + + +  ++L+  Y+ N  K+  PE      ++ 
Sbjct: 127 ESKEKEMREQLRRNLLAESYLIQRGIQDVRVPEEDLKRFYKDNSAKFTVPEAVKASHIMI 186

Query: 278 PNQKEA--DEAFQS-----------LKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIP 321
              K+A  +E  Q+           L+  K F +LA+E      +     LG  + +++P
Sbjct: 187 TVNKKATPEEIAQANAKIVKVREEVLQGKKSFEELAKEHSSGDSASKGGDLGYINPQFMP 246

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                   F L K G+ + V+   FG+ +  V + KPS    F EVK  +   +      
Sbjct: 247 -PEFDKVAFQL-KVGEVSDVVKTKFGFHVIKVFDKKPSRVQEFAEVKGLLEKFLLNQYQE 304

Query: 382 EKVKEDYKRLEEFLALGTSMD 402
            K  E    L     +  S+ 
Sbjct: 305 RKRTEIAMELRRDARIEVSLK 325


>gi|298485302|ref|ZP_07003394.1| Survival protein surA precursor (Peptidyl-prolyl cis-trans
           isomerase surA) [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160152|gb|EFI01181.1| Survival protein surA precursor (Peptidyl-prolyl cis-trans
           isomerase surA) [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 428

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 19  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 73

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++  +  +   + +
Sbjct: 74  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 129

Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V                 + L  DQ K    E   +  I++      +      A 
Sbjct: 130 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 189

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + + +  
Sbjct: 190 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 249

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            ++ A++ +  ++
Sbjct: 250 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 309

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F +LA+    + G +L+   L       +        + +   +G+ +     ++G
Sbjct: 310 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 367

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + ++  A N +R  K  E+++   +++ +   +   +   ++
Sbjct: 368 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 425

Query: 407 REK 409
             +
Sbjct: 426 AAQ 428


>gi|152980669|ref|YP_001353234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Janthinobacterium
           sp. Marseille]
 gi|151280746|gb|ABR89156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Janthinobacterium
           sp. Marseille]
          Length = 259

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 6/146 (4%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK  + + +++AEY++ K +    E      ++   + EA      LK G KF  L
Sbjct: 103 ADYLKKNPVKDADIKAEYDRFKAQASDKEY-HARHILVEKEDEAKAIIAKLKGGAKFEDL 161

Query: 300 AEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355
           A+   K     + G       P       +D++ +L +KG  +   +   FGY +  + +
Sbjct: 162 AKASSKDPGSAANGGDLDWASPASFVKPFSDAMVAL-QKGQLSETPVKTQFGYHVIKLDD 220

Query: 356 IKPSFTVSFQEVKKDIANQMRITKAS 381
           ++ +   + +EVK  IA  ++  K  
Sbjct: 221 VRTAKIPTLEEVKPQIAESLQQKKLQ 246



 Score = 38.8 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 39/115 (33%), Gaps = 1/115 (0%)

Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKC 562
            + ++   K G  F D+ K       +      +D      F       + +     +  
Sbjct: 145 AKAIIAKLKGGAKFEDLAKASSKDPGSAANGGDLDWASPASFVKPFSDAMVALQKGQLSE 204

Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            P++    Y V K+ + +   +   ++    + + + +  L +    L+S+  + 
Sbjct: 205 TPVKTQFGYHVIKLDDVRTAKIPTLEEVKPQIAESLQQKKLQAFQQQLRSKAKIQ 259



 Score = 37.3 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 12/80 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +  +  V  + +P S      KQ      Q            +  L   + D L++   L
Sbjct: 22  AQNLAVVNGKPIPSSRADVMIKQMTSQGQQ-----------DTPELRAMVKDELINREIL 70

Query: 100 DQFIEDIGLEADHGRVWGEI 119
            Q  + +GL A    V  +I
Sbjct: 71  IQEADKLGLGAQAD-VKNQI 89


>gi|307729669|ref|YP_003906893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
 gi|307584204|gb|ADN57602.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
          Length = 259

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 6/146 (4%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK   S+ E+ A Y    +     E   +  ++  N+++A +    +K G  F +L
Sbjct: 103 EDFVKKNTPSDAEVTARYNALIKDAGGKEY-HLHHILVDNEQQAKDLIAKIKGGASFEEL 161

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355
           A++  K       G    +S         A++   L +KG  +   +H  FG+ I  V +
Sbjct: 162 AKQFSKDPGSGKNGGDLDWSDPKAYVPEFANAATHL-QKGQMSDEPVHTQFGWHIIRVDD 220

Query: 356 IKPSFTVSFQEVKKDIANQMRITKAS 381
           ++       ++V+  I  Q++  K  
Sbjct: 221 VRNITPPPLEQVRAQIVQQIQQEKLQ 246



 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 49/152 (32%), Gaps = 15/152 (9%)

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASE-----KVKEDYKRLEEFLA---LGTSMDEI 404
           + +     T S  EV       ++     E      + ++ ++ ++ +A    G S +E+
Sbjct: 102 IEDFVKKNTPSDAEVTARYNALIKDAGGKEYHLHHILVDNEQQAKDLIAKIKGGASFEEL 161

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           +++        P     G D+   +  A     +              D  V    G + 
Sbjct: 162 AKQFS----KDPGSGKNGGDLDWSDPKAY--VPEFANAATHLQKGQMSDEPVHTQFG-WH 214

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
            +++ +        LE+V   + +  +  K  
Sbjct: 215 IIRVDDVRNITPPPLEQVRAQIVQQIQQEKLQ 246



 Score = 40.4 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G +F ++ K       +      +D ++ K +  +  +        
Sbjct: 142 EQQAKDLIAKI-KGGASFEELAKQFSKDPGSGKNGGDLDWSDPKAYVPEFANAATHLQKG 200

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P+     + + +V + +       ++  + + Q + ++ L +    L+    + 
Sbjct: 201 QMSDEPVHTQFGWHIIRVDDVRNITPPPLEQVRAQIVQQIQQEKLQAFEEGLRKNAKIQ 259


>gi|40063240|gb|AAR38067.1| PPIC-type PPIASE domain protein [uncultured marine bacterium 577]
          Length = 263

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 3/156 (1%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK + S  EL+ EY+         +      ++   + EA +    +KKG KF ++
Sbjct: 106 ADFIKKNDPSEKELRDEYQAVSAASMGDQEYNPSHILISTEAEAKDIIAKIKKGGKFEEI 165

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A+++       + G    +S         A+++  L K       +  SFG+ +   + +
Sbjct: 166 AKDRSIDDGSKNKGGELGWSSARSYAQPFAEALVKLKKGEITQAPVKSSFGWHVIRSNGM 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +P     F+EVK+ +  ++   K    ++E   + +
Sbjct: 226 RPLKIPPFKEVKQKVQQRILQQKFQAYLEELKDKAK 261



 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
            ++A  ++ +  K GK F +I K+      + N+   +  +  + +       +      
Sbjct: 146 EAEAKDIIAKIKKGGK-FEEIAKDRSIDDGSKNKGGELGWSSARSYAQPFAEALVKLKKG 204

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P+++   + V +    +   +    +    + Q + +    + +  LK +  + 
Sbjct: 205 EITQAPVKSSFGWHVIRSNGMRPLKIPPFKEVKQKVQQRILQQKFQAYLEELKDKAKIE 263


>gi|260467140|ref|ZP_05813318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium
           opportunistum WSM2075]
 gi|259029064|gb|EEW30362.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium
           opportunistum WSM2075]
          Length = 309

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 5/138 (3%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
            ++++ E++A Y++               ++   ++EA+   + L  G  F +LA E   
Sbjct: 141 AKVTDAEVRARYDQEIANTPPVNEVHARHILVKTKEEAEAIIKQLDGGADFQKLANEHTS 200

Query: 306 SL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                 S   LG F    +       + F+L         +   FG+ +  + + +    
Sbjct: 201 DPSGKTSGGDLGWFGPGQMV-PEFDKAAFALEVGKYTEQPVQSQFGWHVIKLEDKRTKQP 259

Query: 362 VSFQEVKKDIANQMRITK 379
            +F +VK      +   K
Sbjct: 260 PAFDDVKDQAKQAVIRDK 277



 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 47/131 (35%), Gaps = 4/131 (3%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKN--LGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
             +A  ++ +    G +F+ +        S  T+          +    +     F+  V
Sbjct: 175 KEEAEAIIKQLD-GGADFQKLANEHTSDPSGKTSGGDLGWFGPGQMVP-EFDKAAFALEV 232

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                 P+++   + V K+ + +       D       Q + +D   +++  L++   V 
Sbjct: 233 GKYTEQPVQSQFGWHVIKLEDKRTKQPPAFDDVKDQAKQAVIRDKYFALVKSLRAGAKVE 292

Query: 618 VHDNLIQRYLD 628
           + D  +++ +D
Sbjct: 293 IPDVKLKQAVD 303


>gi|74317550|ref|YP_315290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057045|gb|AAZ97485.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 274

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 4/152 (2%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           + +  K   +++ E+QA Y+K K     PE R    ++   + EA +    L K  KF  
Sbjct: 117 LEDYIKAHPVTDAEVQAAYDKAKAGPIEPEYR-ARHILVSTEAEAKKVIADLGKKAKFET 175

Query: 299 LAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           LA++  K       G    ++         ++++ SL K       +   FGY +  + +
Sbjct: 176 LAKKMSKDPGSAKNGGALDWADRRAFVPEFSEALASLKKGETTQTPVKTQFGYHVIRLDD 235

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
            +         V+ +I  Q++  +  + V   
Sbjct: 236 TRQPKLPELNAVRDEIVKQLQQQRVRDAVTAA 267


>gi|119952910|ref|YP_945119.1| basic membrane protein [Borrelia turicatae 91E135]
 gi|119861681|gb|AAX17449.1| basic membrane protein [Borrelia turicatae 91E135]
          Length = 344

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 54/418 (12%), Positives = 123/418 (29%), Gaps = 99/418 (23%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70
            K+  +   + FL++ +         +  V+ +     + +  + F +     +  + + 
Sbjct: 4   IKVIFMGNVLCFLLFFVVGITSFAQNTPVVI-INLHSNEIITKTEFDSK----VNTLKKT 58

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
            G  +++         K++L  L++     Q     G++ +   V   I           
Sbjct: 59  QGRDLSNAE------RKQVLQILIADVLFGQEALKQGIKVEDAEVMQTIRT----QFGLL 108

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
             + +     +  +G N  E +    + LS   ++                         
Sbjct: 109 NLTDEQIKQMVESQGTNWNELLSSMKRSLSAQKLI------------------------- 143

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
               + +       I  P    + +++E  K  +  P+  RIS++               
Sbjct: 144 ----LKMAQPKFSEIKIPGEKEVVEYYEANKTKFVNPDIARISHVF-------------- 185

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD 309
                        + S + +  E L       A +    +K  K  F +   +       
Sbjct: 186 -------------FSSKDKKRSEVL-----ANAKDIVNQIKSKKITFEEAVRKYSNDEGS 227

Query: 310 ----ISLGSFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
                 LG  ++       +  +     +F + KKGD +  I    G+ I  V+ +    
Sbjct: 228 KVKNGDLGFLARGDQNAQNVLGLDFVKEVF-MLKKGDISQPISSKEGFHIVKVTEMYSQR 286

Query: 361 TVSFQE---------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
            +  Q+         VK  I N M      + V    + + + L    S+  +    K
Sbjct: 287 FLGLQDKISPNVDMTVKDAIKNNMVNIHQQQIVARVQQEIYDKLNKSASIQILDSSLK 344


>gi|304413706|ref|ZP_07395150.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Candidatus Regiella
           insecticola LSR1]
 gi|304283797|gb|EFL92191.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Candidatus Regiella
           insecticola LSR1]
          Length = 434

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 60/436 (13%), Positives = 138/436 (31%), Gaps = 75/436 (17%)

Query: 19  VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
            +L +  +I+  +    S     +   V  + +  S      +       Q      +  
Sbjct: 5   GMLILSMVIFTHAGFAASQQTDKSAAIVNSKVILQSDIDTLLQSVKFSAEQ-----ADQP 59

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
                 L  +I+++L+      Q  + +G+      +   IA         N  + D   
Sbjct: 60  IPDEKQLRHQIIESLIMNDIQLQMAQKMGMTISESHLDNAIANIAA----QNHMTIDQLR 115

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN------RS 191
           SRLA+EGIN + Y  H    +  ++V        ++     ++   +            +
Sbjct: 116 SRLAKEGINYQTYRTHIRNEMQISEVRNNEVRRRIKILPQEVESLAQQLAAQTGGNTELN 175

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS-- 249
           + +I+++     ++     A          +   A      S+    +        +   
Sbjct: 176 ISHILISLPENASVQQKDQAEKKA------EKIVAEIKSDKSFAKLAIAHSSDSQALKGG 229

Query: 250 --------------NDELQAEYEKN---------------------KEKYFSPEIRTVEQ 274
                          ++L+   +++                      +K  S     V  
Sbjct: 230 QMGWSKLAELPRLFAEQLKTANKRDIIGPIRSGVGFHILKVNDIRKADKKISITEMRVRH 289

Query: 275 LVFP-----NQKEADE----AFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYI 320
           ++         K+A        Q +K GK  F  +A    E+ G +     LG  S +  
Sbjct: 290 ILLKPSVMMTDKQAQAKLQSVRQKIKSGKTDFAAVAREISEDPGSAQQGGDLGWISPDDR 349

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
            D +  + + SL KKG  +P +  S G+ +  + + + +   + + +K+     +   K 
Sbjct: 350 YDPTFLNELASL-KKGAISPPVRSSLGWHLIQLIDSR-TVDRTDEMLKEQAYRMLIKRKF 407

Query: 381 SEKVKEDYKRLEEFLA 396
           SE+++   + +     
Sbjct: 408 SEELQPWMQEIRAAAY 423


>gi|171321062|ref|ZP_02910045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MEX-5]
 gi|171093676|gb|EDT38826.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MEX-5]
          Length = 260

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 3/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               KK + ++ E++A Y++  +         +  ++  ++++A +    +K G KF  L
Sbjct: 103 ESFLKKNQPTDAEVKARYDELVKGAGGNREYHLHHILVDSEQQAKDLIAKIKGGAKFEDL 162

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           A++  K       G       P   + +  +     +KG  T   +   FG+ I    +I
Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRADDI 222

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +      F +VK  IA Q+   K  
Sbjct: 223 RDVAPPPFDQVKAQIAQQLVQQKLQ 247



 Score = 40.4 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G  F D+ K       +      +D ++ K +  +  +        
Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P++    + + +  + +       D+  + + Q + +  L +    L+ Q  + 
Sbjct: 202 QMTDTPVKTQFGWHIIRADDIRDVAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260


>gi|152995084|ref|YP_001339919.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
           MWYL1]
 gi|150836008|gb|ABR69984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
           MWYL1]
          Length = 416

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 58/433 (13%), Positives = 132/433 (30%), Gaps = 77/433 (17%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTV-VSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           F  ++   F +  +     + +    +   V  + +  S  ++ ++     +    G V+
Sbjct: 6   FFSLII--FALASVQTLHAAPTKIDGISAIVDSKPILESDIMSRFQIVKDRVP---GGVM 60

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
                    + ++I + ++  A    +   +G+ A    V   I        K+      
Sbjct: 61  TD------NIHRQIQNQMIDEALQVNYARKVGMRASSSEVDNAILGV----AKNMNLDLQ 110

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV-----------GGMRPSNLLLDQAKR 184
              + LA +GIN + Y +   + +   ++    V                S+  + + K 
Sbjct: 111 GLKNVLADKGINYERYREQIEQEILINNIKREIVKKRIAISEQEIDDYLSSDTSITKEKD 170

Query: 185 FYFENRSVDYIVLNNRHVPAIADP------SNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                  +            I          N  + Q  E     +   E   + +   +
Sbjct: 171 QVHLRHIIIRASNPEEAAAKIKTIAGKIHSENDFVQQAIENSDGQFAI-EGGDLGWRPLN 229

Query: 239 VHEKEKKIEISNDE--------------LQAEYEKNKEKYFSPEIRTVEQLVF------- 277
                    + +++              L    EK        +      ++        
Sbjct: 230 QLPPLFVRALESEKGPLIGPLQSNAGFHLLWVIEKRSPDVTLQQQTKTRHILVRANEIRN 289

Query: 278 --PNQKEADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFS 331
               +  ADE ++ L+ G  F QLA+E    QG +L    LG  +   +      + +  
Sbjct: 290 MEQTKVLADELYKKLENGADFAQLAKEYSEDQGSTLQGGDLGWVTLGAMV-PEFEE-VMK 347

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
               GD +      FG+ I  V   + +          DI+++++ + A   +    + +
Sbjct: 348 KTNIGDISKPFRTQFGWHILQVEGRREA----------DISDKVKRSNAERALTAQKQDI 397

Query: 392 EEFLALGTSMDEI 404
                LG  +DE+
Sbjct: 398 ----VLGNWLDEL 406



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 61/199 (30%), Gaps = 13/199 (6%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-- 277
             + YR    + I          +K+I IS  E+      +       +   +  ++   
Sbjct: 122 NYERYREQIEQEILINNIKREIVKKRIAISEQEIDDYLSSDTSITKEKDQVHLRHIIIRA 181

Query: 278 ----PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIF 330
                   +       +     F+Q A E      ++    LG      +P      ++ 
Sbjct: 182 SNPEEAAAKIKTIAGKIHSENDFVQQAIENSDGQFAIEGGDLGWRPLNQLP-PLFVRALE 240

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYK 389
           S  +KG     +  + G+ +  V   +       Q+ K   I  +    +  E+ K    
Sbjct: 241 S--EKGPLIGPLQSNAGFHLLWVIEKRSPDVTLQQQTKTRHILVRANEIRNMEQTKVLAD 298

Query: 390 RLEEFLALGTSMDEISRRE 408
            L + L  G    ++++  
Sbjct: 299 ELYKKLENGADFAQLAKEY 317


>gi|330817257|ref|YP_004360962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           gladioli BSR3]
 gi|327369650|gb|AEA61006.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           gladioli BSR3]
          Length = 259

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 4/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK + S+ E++A+Y++   K  +     +  ++  N+++A +    +K G KF  L
Sbjct: 103 EDFVKKNQPSDAEVKAKYDE-LAKGATGSEYHLHHILVDNEQQAKDLIAKIKAGAKFEDL 161

Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G       P       A++   L K       +   FG+ I  V ++
Sbjct: 162 AKQFSKDPGSAKNGGDLDWADPKSFVPEFANAATHLQKGQMTDEPVKTQFGWHIIRVDDV 221

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +P     F++VK  +A QM   K  
Sbjct: 222 RPIAPPPFEQVKAQLAQQMVQQKLQ 246



 Score = 43.8 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G  F D+ K       +      +D  + K F  +  +        
Sbjct: 142 EQQAKDLIAKI-KAGAKFEDLAKQFSKDPGSAKNGGDLDWADPKSFVPEFANAATHLQKG 200

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P++    + + +V + +       ++  + L Q M +  L +    L++Q  + 
Sbjct: 201 QMTDEPVKTQFGWHIIRVDDVRPIAPPPFEQVKAQLAQQMVQQKLQAFEEKLRAQAKIQ 259



 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 41/123 (33%), Gaps = 10/123 (8%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           ++  K L   +  G   ++++++        P     G D+   +  +  +  +      
Sbjct: 142 EQQAKDLIAKIKAGAKFEDLAKQFS----KDPGSAKNGGDLDWADPKS--FVPEFANAAT 195

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSS 501
                   D  V    G +  +++ +  P      E+V   + +     K     E++ +
Sbjct: 196 HLQKGQMTDEPVKTQFG-WHIIRVDDVRPIAPPPFEQVKAQLAQQMVQQKLQAFEEKLRA 254

Query: 502 KAN 504
           +A 
Sbjct: 255 QAK 257


>gi|320109145|ref|YP_004184735.1| SurA domain-containing protein [Terriglobus saanensis SP1PR4]
 gi|319927666|gb|ADV84741.1| SurA domain protein [Terriglobus saanensis SP1PR4]
          Length = 360

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/379 (12%), Positives = 113/379 (29%), Gaps = 82/379 (21%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
            L+   +   + G         G+  V SV  + +P +     ++ ++     +    VN
Sbjct: 16  LLIAGTLSLALTG----CHPTHGADVVASVNGKAIPRADLDRFYQSQMAQNQNQ--QPVN 69

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
            ++A S  L   IL +L+    + Q    + L A +  V  ++            ++ + 
Sbjct: 70  EDQADSARL--TILRSLIDEEIIQQRAAKMNLTASNEDVDAKVTEMKA------PYTEEQ 121

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           F  RL        +      + L+   ++                               
Sbjct: 122 FNERLKASNHTLDDMKREIRRSLTFDKLLN------------------------------ 151

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
              + + +  + ++  ++ ++  +K  Y   E  +       V        ++    +A 
Sbjct: 152 ---KEINSKINITDGDVSSYYAAHKSEYNLMET-QYHLGQVLVTSFPSPQAVNLQSSKAT 207

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISL 312
            +                     +K+       +  G+ F  +A    E    + +   +
Sbjct: 208 ND------------------AEAKKKIQTLKNRIDSGEDFSAIAMNFSENPQTAQNGGDM 249

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTP----------VIHGSFGYVIAHVSNIKPSFTV 362
           G  S+  +    L+ +  +  K G  T                 GYVI  + +   +   
Sbjct: 250 GFISESQLHTDILSYTAVTKLKAGQVTDILPVFDQPASPSKKVVGYVILKLISRDAAGQR 309

Query: 363 SFQE--VKKDIANQMRITK 379
              +  V+++I  Q+   +
Sbjct: 310 LLTDPAVQQNIRQQLHDAR 328


>gi|255026336|ref|ZP_05298322.1| hypothetical protein LmonocytFSL_08280 [Listeria monocytogenes FSL
           J2-003]
          Length = 247

 Score = 97.0 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 83/225 (36%), Gaps = 26/225 (11%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247
           +      +   +   ++KY++ Y              +    + + Y L      E  ++
Sbjct: 15  LEDKYTVTEKEVNAEYKKYEEQYGDSFESTLSSNNLTKTSFKENLEYNLLVQKATEANMD 74

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           +S  +L+A Y+  +          V  ++  ++  A E    LK G+KF  LA+E     
Sbjct: 75  VSESKLKAYYKTWEPDIT------VRHILVDDEATAKEIQTKLKNGEKFTDLAKEYSTDT 128

Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +  + G     + P   D +   + ++L  K D + ++  ++GY +  +       T + 
Sbjct: 129 ATSTNGGLLDPFGPGEMDETFEKAAYALENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAK 188

Query: 365 QEV---KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           ++       I +Q+     +  +K++ K     +      D  + 
Sbjct: 189 EKANVKAAYIKSQLTSENMTAALKKELKAANIDIKDSDLKDAFAD 233


>gi|15805112|ref|NP_293797.1| peptidyl-prolyl cis-trans isomerase [Deinococcus radiodurans R1]
 gi|6457733|gb|AAF09662.1|AE001870_1 peptidyl-prolyl cis-trans isomerse, putative, PpiC family
           [Deinococcus radiodurans R1]
          Length = 677

 Score = 97.0 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 73/627 (11%), Positives = 188/627 (29%), Gaps = 138/627 (22%)

Query: 32  DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
            +LF+    + V+ V    V      ++ ++   +++ + G V+  +    +      + 
Sbjct: 55  GSLFNRQEGTPVIKVNGDAVTAEQLESA-RRASPLLADEPGSVLADDAKVYL------VS 107

Query: 92  NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
             +    +   ++D  ++     V  E+ +       +    +  +   L   G+ +  +
Sbjct: 108 QAIDRGAVLSGLKD--VQVSRADVNAEVQKV---RESNKLTDNKAWTDALQSNGLTDASF 162

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
                + L+                                           A+  P++A
Sbjct: 163 RTQVRQQLAYQRKTDELR---------------------------------KAVPAPTDA 189

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
            L  +++  K  Y+A                                             
Sbjct: 190 ELKAYYDLNKSKYQAEPQI----------------------------------------V 209

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLA-------EEQGKSLSDISLGSFSKEYIPDV- 323
             Q+V  ++ +A       + G  F  LA       +++G +L+ +  G+  +  +    
Sbjct: 210 GRQIVVTDKAKAQSLLAQARGGADFAVLASANSTENKDRGGALAPLD-GNQPRPVLQAAL 268

Query: 324 --SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
             ++ ++ F L K G  T VI     + I  V    P    +F++ K D+ + +R  K +
Sbjct: 269 PTAVGEAAFRL-KNGGLTDVIESGGKFYIVKVEKFLPGQPKTFEQAKTDVVSAVRQQKQN 327

Query: 382 EKVKEDYKRLEE----FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI---- 433
             +++    L +         T   E      +   ++P  D   + +  +++A +    
Sbjct: 328 AALEKWSDDLRKNAQVEYVDPTWKVENPTVASVAGHNIPYSDVVAQVMNNQQIAGLIGQL 387

Query: 434 -----------PYKEQLLFRVFGKDDPLSKDHTVALPDGSY----------MWVQIKESI 472
                       +K Q++ ++       +    + L                  +  +  
Sbjct: 388 PAEQLPTLLNKTFKPQVVQQLIQGYAAPNIAQKLGLSLSGSRQEIAQQLAAYGARDVKVS 447

Query: 473 PARDRKL--EEVLT-DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
            A  +K   E V   +V       + + +  ++A     +++ +G +F       G ++ 
Sbjct: 448 DADVQKYYRENVKQYEVPASATLDEASFKDKNQAAAFRADWNGQG-DFVTAASKAGGTVS 506

Query: 530 TTNQINRMDNENKFFGYDGISQVFS------GPVEMVKCFPIENGLSY-VVFKVTNSKVG 582
              Q++   ++         +  F       G   +    P+ +  S   V  +      
Sbjct: 507 ERGQVSPTADQTTGAVSPLTAAAFGQNLRSVGAGSLTPVVPVGDRFSVGYVRDLVRPTTR 566

Query: 583 PVQEK-DKFISYLTQMMNKDLLDSVIA 608
           P+ E  D+    L      +   + + 
Sbjct: 567 PLSEVGDEIRQGLLSSKQAEAGQAFLD 593



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 78/208 (37%), Gaps = 6/208 (2%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                + +++S+ ++Q  Y +N ++Y  P   T+++  F ++ +A            F+ 
Sbjct: 437 AAYGARDVKVSDADVQKYYRENVKQYEVPASATLDEASFKDKNQAAAFRADWNGQGDFVT 496

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK------GDFTPVIHGSFGYVIAH 352
            A + G ++S+    S + +         +  +  +       G  TPV+     + + +
Sbjct: 497 AASKAGGTVSERGQVSPTADQTTGAVSPLTAAAFGQNLRSVGAGSLTPVVPVGDRFSVGY 556

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V ++    T    EV  +I   +  +K +E  +    +    L+   ++D++   +   S
Sbjct: 557 VRDLVRPTTRPLSEVGDEIRQGLLSSKQAEAGQAFLDKQVSALSPKNNLDQVLEAQAKPS 616

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
                     +  + +       +E  L
Sbjct: 617 RRRLPKPKRPRRRRRERRPPQMRREAAL 644



 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 76/243 (31%), Gaps = 7/243 (2%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           K   + L      G     ++      + D           + + V        +    F
Sbjct: 218 KAKAQSLLAQARGGADFAVLASANSTENKDRGGALAPLDGNQPRPVLQAALPTAVGEAAF 277

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
              +    D   +   G +  V++++ +P + +  E+  TDV    +  K    +   ++
Sbjct: 278 RLKNGGLTDVIES--GGKFYIVKVEKFLPGQPKTFEQAKTDVVSAVRQQKQNAALEKWSD 335

Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCF 563
            L      E  +     +N   + +  + I   D   +      I+  +   P E +   
Sbjct: 336 DLRKNAQVEYVDPTWKVENPTVASVAGHNIPYSDVVAQVMNNQQIAGLIGQLPAEQLPTL 395

Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
             +     VV ++      P   +   +S       +++   + AY      V V D  +
Sbjct: 396 LNKTFKPQVVQQLIQGYAAPNIAQKLGLSL--SGSRQEIAQQLAAY--GARDVKVSDADV 451

Query: 624 QRY 626
           Q+Y
Sbjct: 452 QKY 454


>gi|157825956|ref|YP_001493676.1| protein export protein prsA precursor [Rickettsia akari str.
           Hartford]
 gi|157799914|gb|ABV75168.1| protein export protein prsA precursor [Rickettsia akari str.
           Hartford]
          Length = 282

 Score = 97.0 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           K  I++     EY K        E   V  ++  +QKEA++    L KG  F +LAEE  
Sbjct: 116 KSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEELS 175

Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              +  S G      I +          +  F+L K  + +  +  +FG+ I  V   KP
Sbjct: 176 LDKASASNGGVIGYIILNQPGQLVPEFENKAFAL-KVNEVSIPVKTTFGWHIIKVLEKKP 234

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               + +E K  I N +      + + +   + +
Sbjct: 235 VPIPTKEEAKVTIDNILAAEVLKKYISDLESKAD 268


>gi|307244093|ref|ZP_07526212.1| putative peptidylprolyl isomerase PrsA1 [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492617|gb|EFM64651.1| putative peptidylprolyl isomerase PrsA1 [Peptostreptococcus
           stomatis DSM 17678]
          Length = 353

 Score = 97.0 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 105/285 (36%), Gaps = 51/285 (17%)

Query: 145 GINEKEYIDHYT--KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
           GI++KEYI+     K++            M+  N    +  +       V   V  +   
Sbjct: 32  GISKKEYIEQLKFTKLMYEMQYGDKIWDQMKSQNKEYQETVKKNVLQSMVKSRVYLSYAE 91

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKR------------------ISYILFDVHEKEK 244
                P   VL+Q+ +K K+ +   + K                    + +   ++  +K
Sbjct: 92  KNNVKPDEKVLSQYKKKNKEAFENAKAKEKFEKAGIDQAFMDKYSEQAATMTSLLNFLQK 151

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------------ADEAFQ 288
           K   + +E++A++E   +K           ++     +                A++  +
Sbjct: 152 KAMPTEEEVKAKFETEGDKL------DASHILIKTVDDNNKPLSDEKKAEAKKKAEDLLK 205

Query: 289 SLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            LK G  F +LA+    + G +    +LG F K  +       + F+L K+G+ +P++  
Sbjct: 206 QLKSGTDFAELAKKNSQDPGSAAKGGALGEFGKGQMV-SEFEKAAFAL-KEGEISPIVET 263

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
            FGY I  ++    +    +++ K  I   +   K  + V E  K
Sbjct: 264 QFGYHIIKLNKRVKA---DYEKSKDKIKTSLINEKIKKLVDEIVK 305



 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 60/188 (31%), Gaps = 14/188 (7%)

Query: 19  VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV--- 75
           V+  +   + GLS    S   S  V SV  + +    +I   K    M   + G  +   
Sbjct: 4   VLAILLAAVVGLSTVACS---SDDVASVDGKGISKKEYIEQLKFTKLMYEMQYGDKIWDQ 60

Query: 76  --NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
             +  +     + K +L ++V       + E   ++ D   +     ++         F 
Sbjct: 61  MKSQNKEYQETVKKNVLQSMVKSRVYLSYAEKNNVKPDEKVLSQYKKKNKE------AFE 114

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           +     +  + GI++     +  +  + T ++        P+   +        +     
Sbjct: 115 NAKAKEKFEKAGIDQAFMDKYSEQAATMTSLLNFLQKKAMPTEEEVKAKFETEGDKLDAS 174

Query: 194 YIVLNNRH 201
           +I++    
Sbjct: 175 HILIKTVD 182


>gi|292493646|ref|YP_003529085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
 gi|291582241|gb|ADE16698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
          Length = 308

 Score = 97.0 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 70/183 (38%), Gaps = 21/183 (11%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQA----EYEKNKEKYFSPEIRTVEQLVFPNQKE-- 282
            +++           +    S+ +L+A     Y  +K+K  + E R V  ++     +  
Sbjct: 101 RRQVLARALMKKVAGEAAVPSDRDLKALARERYSLHKDKLRTAEKRRVAHILLAEPADCP 160

Query: 283 ----------ADEAFQSLKKGKKFIQLAEE----QGKSLSDISL-GSFSKEYIPDVSLAD 327
                     A    + L  G  F   A E    +G +     L G   ++        D
Sbjct: 161 CDERPPARERAAALRRELLAGGDFGAAARERSRDKGTAPDGGELPGWIKRDGRLVKPFED 220

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           + F+L K GD +  +   FG  +  +  +KPS  +SF+EVK  +  Q+R    +  +++ 
Sbjct: 221 AAFALTKPGDISKPVETPFGVHLIKLLEVKPSRQLSFEEVKGKLMRQVRAEVRASAMEQK 280

Query: 388 YKR 390
             +
Sbjct: 281 RSQ 283


>gi|52144166|ref|YP_082662.1| peptidylprolyl isomerase [Bacillus cereus E33L]
 gi|51977635|gb|AAU19185.1| peptidyl-prolyl cis-trans isomerase (protein export protein)
           [Bacillus cereus E33L]
          Length = 285

 Score = 97.0 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 17/148 (11%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
              +  K  ++  +++A Y+        PEI+    ++  ++ EA E  + L  G  F +
Sbjct: 115 AMNEAIKKSVTEKDVKAHYK--------PEIK-ASHILVSDENEAKEIKKKLDVGASFEE 165

Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+++ + L        LG F+   +       + + L K G  +  +    GY I  ++
Sbjct: 166 LAKQESQDLLSKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVKSPNGYHIIKLT 223

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE 382
           + K      + EVK  I   +   + ++
Sbjct: 224 DKKE--LKPYDEVKDSIRKNLEEERIAD 249



 Score = 36.9 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L +G S +E++++E    +        G   
Sbjct: 128 DVKAHYKPEIKASHILVSDENEAKEIKKKLDVGASFEELAKQESQDLLSKEKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+     P  E   +++          + V  P+G Y  +++ +      +  +EV   
Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVKSPNG-YHIIKLTDKKE--LKPYDEVKDS 237

Query: 486 VKKDWKTVKTAE 497
           ++K+ +  + A+
Sbjct: 238 IRKNLEEERIAD 249


>gi|122070641|sp|Q145L3|SURA_BURXL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 450

 Score = 97.0 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 56/427 (13%), Positives = 123/427 (28%), Gaps = 78/427 (18%)

Query: 30  LSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
           +     S SG  TV      V    +               ++Q+   V   ++     L
Sbjct: 25  VQAQALSGSGGQTVDTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQ-----L 79

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
            +++L+ +V      Q  ++ G+  D   V   + R        N  + DV+ SR+  +G
Sbjct: 80  RQQVLNQMVLERIQLQKAKEDGITIDDATVQKTLERLAA----ANNLTLDVYRSRIEAQG 135

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD----------- 193
           +    +       L+ + +    V   +  S+  +     +    R  +           
Sbjct: 136 VPWTTFTSDARTELTLSRLREKEVDSKVTVSDAEV---ANYIASQRGPNAGLTSDLHLQH 192

Query: 194 -YIVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRA------------------------ 226
            ++           + +         + K   N+                          
Sbjct: 193 IFLKAPLNASETDIEAAQRKAQALLAEAKGGANFEKLAKSNSQAPDASKGGDTGFVSPSK 252

Query: 227 --PEYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF- 277
             PE+ + +  L         I  S+  E+    ++   +  S +        V  ++  
Sbjct: 253 LPPEFVKAASALRPGEVNPDLIRTSDGFEIVRLVDRRAGQGTSSDAPKLVQTHVRHILLR 312

Query: 278 --------PNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLA 326
                     +++  E    +  G  F + A    + G S     LG  S          
Sbjct: 313 VGDGMSEPQARQKLLEIKNEIAAGGDFAKFAHTYSQDGSSSQGGDLGWISPGETV-PEFE 371

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            ++ SL + G  +  +   +GY +  V   + S   S  +        +   KA +   +
Sbjct: 372 RAMNSL-QDGQISDPVRSEYGYHLIQVLGRRESEG-SVAQQMDLARQAIGQRKAEQAYAD 429

Query: 387 DYKRLEE 393
             + L +
Sbjct: 430 WLRELRD 436


>gi|315608313|ref|ZP_07883302.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574]
 gi|315249943|gb|EFU29943.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574]
          Length = 716

 Score = 97.0 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 87/699 (12%), Positives = 200/699 (28%), Gaps = 132/699 (18%)

Query: 17  FLVVLFVPFLIWG-LSDALFSVSGSS------TVVSVGRQKVPFSSFINSWKQELGMISQ 69
            +++  + F ++  +++ LF    SS       V  V  +K+    F     +   +I  
Sbjct: 12  LILICIIGFGLFAFIAEELFRSCESSRNDQRQQVGEVLGEKISVQDFQKLLDEYQEVIKM 71

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG--------EIAR 121
           + G    SE  +   +   + +  V    +++  +++GL      +           + +
Sbjct: 72  QQGTETLSEE-QLNQVKDMVWNTYVQSKLVEKEAKELGLTVTDTELQDVLKAGTNPMLLQ 130

Query: 122 SPLFHGKDNKFSHDVFVSRLAR-----EGINEKEYIDH-------------YTKMLSRTD 163
           +P  + +  +F        LA        +N +    +               + L    
Sbjct: 131 TPFVNQQTGRFDAASLQKFLADFKANKAAVNPQMQEQYQKIYNYWTFIEKTLRQQLLAQK 190

Query: 164 VVGMFVGGMRPSNLLLDQA----------------------------------------K 183
             G+       + +    A                                         
Sbjct: 191 YQGLLAHCFLSNPVEAKMAFEDENQESQINLAAFPYSDIADNKVTVEESDLKAKYDQLKA 250

Query: 184 RFYF--ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
           RFY   E+R + Y+ +     PA        L  +  +        E  R S  L +   
Sbjct: 251 RFYQPMESRDIKYVDIEVSASPADRAALQKELAGYRTQLAAAADPAEVVRKSGSLVEYIG 310

Query: 242 KEKKIEISNDELQAEYEKNK----------------------EKYFSPEIRTVEQLVF-- 277
                +    ++ A+++                          K   P+      +    
Sbjct: 311 VPVPRQFFPQDVAAQFDSMAVGVTSAVKESTLDNSLTIVRLLGKVSLPDSVQFRSIQIGG 370

Query: 278 ----PNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEYI-PDVSLADSIF 330
                    AD  + +L+ G  F  LA++ G   + +  +        +  +     S+ 
Sbjct: 371 ETAAKASATADSVYTALQGGADFEALAKKYGQTGAKTWATAQQLVGSLMQSNTPDQKSMV 430

Query: 331 SLAKKGDF--TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           +  + G+     ++  + G +I  V+  K      F E       +     + +  +  Y
Sbjct: 431 NAVRNGEVNKYNLVKLTQGSIIVQVTARKA-----FSENYTAAVIKKTNDFSKDTYRTAY 485

Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
            +   F++  ++  +I +  +     L  ++          VA I    + L  +F   +
Sbjct: 486 NKFASFVSANSTGADIEKNAEKAGYRLQTLND--MTTSTHNVANIHSTREALKWIFEAKE 543

Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKL--EEVLTDVKKDWKTVKTAEEVSSKANQL 506
                      +   + V + +   A  R +   +V   +K +    K AE++ +K    
Sbjct: 544 GEVSPMYECGDNNHLLVVVLDKIHNAGYRNMNDAQVKEMLKAEVIRDKKAEQLMAKV--- 600

Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE----NKFFGYDGISQVFSGPVEMVKC 562
                 +G       K  GA +   NQ+                     V +        
Sbjct: 601 ------KGVTGISAAKAKGAKVSMVNQVTFAAPVFVPLTGASEPALSGAVAATKKGQFST 654

Query: 563 FPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMNK 600
             ++      +F+VT   + P + +     + L Q   +
Sbjct: 655 HAVKGAAGVYLFQVTGRTMRPGKFDDKAQEAKLAQRAMQ 693


>gi|326803153|ref|YP_004320971.1| putative peptidylprolyl isomerase PrsA3 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651580|gb|AEA01763.1| putative peptidylprolyl isomerase PrsA3 [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 340

 Score = 97.0 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 84/245 (34%), Gaps = 28/245 (11%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL----NNRH 201
           I + +  D   K+     +  + +  +    +  D+ K    E             +N  
Sbjct: 40  ITQGQLNDQMKKVAGDQTLRQLILSEISKQEVGKDRYKEIEQETDQQIAATKAQVGDNDK 99

Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
              +   S     + +++    Y                  +K I +S++EL+  YE  +
Sbjct: 100 FQNVLKSSGVPSEEAYKESLIQYT-----------LTQEALKKNIPVSDEELKKAYEDYE 148

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317
                     +  ++  ++ EA +  + L +G  F  LA+E  K         SLG   K
Sbjct: 149 PAA------EISHILVEDENEAKDIIKQLDQGGDFSALAKEHSKDPGSKEKGGSLGQVEK 202

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             +      D+ F L +       +   +GY I  +   K     SF++ K ++  Q++ 
Sbjct: 203 GQMVK-EFEDAAFKLNEGEYTKEPVKSQYGYHIIKLD--KKGQKSSFEDEKDNLTEQVKN 259

Query: 378 TKASE 382
            K  +
Sbjct: 260 KKMQD 264


>gi|86136812|ref|ZP_01055390.1| PPIC-type PPIASE domain protein [Roseobacter sp. MED193]
 gi|85826136|gb|EAQ46333.1| PPIC-type PPIASE domain protein [Roseobacter sp. MED193]
          Length = 283

 Score = 97.0 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 67/175 (38%), Gaps = 12/175 (6%)

Query: 227 PEYKRISYILFDVHEKEKKI------EISNDE-LQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           P Y +++            +        S++E ++  YE         +      ++   
Sbjct: 88  PHYVKLAVENEMRALLAANVIETVMKSASDEEAVRQAYEDKYSDGDGGDEFNAAHILVET 147

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKG 336
           Q++A E    L  G  F  +A+E+    S      LG F++  +       ++  L + G
Sbjct: 148 QEDALEIKSELDTGADFSIMAKERSTGPSGPNGGDLGWFTRGRMV-PEFEAAVLDL-RAG 205

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +  +   FG+ +  +   + +   +F+EV++ ++ +++      +V +     
Sbjct: 206 EISAPVETQFGWHLILLKERRKTAAPAFEEVRETLSQELQNAAVEARVSDLTAAA 260


>gi|229068702|ref|ZP_04202000.1| Foldase protein prsA 1 [Bacillus cereus F65185]
 gi|229078350|ref|ZP_04210914.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2]
 gi|229177575|ref|ZP_04304953.1| Foldase protein prsA 1 [Bacillus cereus 172560W]
 gi|228605937|gb|EEK63380.1| Foldase protein prsA 1 [Bacillus cereus 172560W]
 gi|228705025|gb|EEL57447.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2]
 gi|228714449|gb|EEL66326.1| Foldase protein prsA 1 [Bacillus cereus F65185]
          Length = 289

 Score = 97.0 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 90/246 (36%), Gaps = 39/246 (15%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I ++E+ D       +  +  M +  +          K +  E++ VD            
Sbjct: 35  ITKEEFYDQMKTQAGKQVLNNMVMEKVL--------IKNYKVEDKDVDKKF--------- 77

Query: 206 ADPSNAVLTQWFEK----YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
               + +  Q+ ++     K      E  + S       EK  +  I++ +++A++E  K
Sbjct: 78  ----DEMKKQYGDQFDTLMKQQGIKEETIKNSVRAQLAQEKAVEQSITDKDVKAKFEDYK 133

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317
           ++           ++  +++ A +    L +GK F +LA++  +          LG F  
Sbjct: 134 KEI------KASHILVKDEETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGP 187

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             +      ++   L KKG+ +  +   FGY I  V++        F + K DI   +  
Sbjct: 188 GKMVK-EFEEAAQKL-KKGEVSEPVKTQFGYHIIKVTDNHADAN--FDKAKADIKKSLVQ 243

Query: 378 TKASEK 383
            K  + 
Sbjct: 244 EKTQDA 249


>gi|122070657|sp|Q48NT5|SURA_PSE14 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 428

 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 19  ESVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 73

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++  +  +   + +
Sbjct: 74  LQMGERSGIRVSDNELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 129

Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V                 + L  DQ K    E   +  I++      +      A 
Sbjct: 130 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 189

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + + +  
Sbjct: 190 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 249

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            ++ A++ +  ++
Sbjct: 250 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 309

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F +LA+    + G +L+   L       +        + +   +G+ +     ++G
Sbjct: 310 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 367

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + ++  A N +R  K  E+++   +++ +   +   +   ++
Sbjct: 368 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 425

Query: 407 REK 409
             +
Sbjct: 426 AAQ 428


>gi|91781822|ref|YP_557028.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           xenovorans LB400]
 gi|91685776|gb|ABE28976.1| Putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           xenovorans LB400]
          Length = 453

 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/427 (13%), Positives = 123/427 (28%), Gaps = 78/427 (18%)

Query: 30  LSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
           +     S SG  TV      V    +               ++Q+   V   ++     L
Sbjct: 28  VQAQALSGSGGQTVDTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQ-----L 82

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
            +++L+ +V      Q  ++ G+  D   V   + R        N  + DV+ SR+  +G
Sbjct: 83  RQQVLNQMVLERIQLQKAKEDGITIDDATVQKTLERLAA----ANNLTLDVYRSRIEAQG 138

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD----------- 193
           +    +       L+ + +    V   +  S+  +     +    R  +           
Sbjct: 139 VPWTTFTSDARTELTLSRLREKEVDSKVTVSDAEV---ANYIASQRGPNAGLTSDLHLQH 195

Query: 194 -YIVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRA------------------------ 226
            ++           + +         + K   N+                          
Sbjct: 196 IFLKAPLNASETDIEAAQRKAQALLAEAKGGANFEKLAKSNSQAPDASKGGDTGFVSPSK 255

Query: 227 --PEYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF- 277
             PE+ + +  L         I  S+  E+    ++   +  S +        V  ++  
Sbjct: 256 LPPEFVKAASALRPGEVNPDLIRTSDGFEIVRLVDRRAGQGTSSDAPKLVQTHVRHILLR 315

Query: 278 --------PNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLA 326
                     +++  E    +  G  F + A    + G S     LG  S          
Sbjct: 316 VGDGMSEPQARQKLLEIKNEIAAGGDFAKFAHTYSQDGSSSQGGDLGWISPGETV-PEFE 374

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            ++ SL + G  +  +   +GY +  V   + S   S  +        +   KA +   +
Sbjct: 375 RAMNSL-QDGQISDPVRSEYGYHLIQVLGRRESEG-SVAQQMDLARQAIGQRKAEQAYAD 432

Query: 387 DYKRLEE 393
             + L +
Sbjct: 433 WLRELRD 439


>gi|324999487|ref|ZP_08120599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudonocardia sp.
           P1]
          Length = 353

 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 80/178 (44%), Gaps = 7/178 (3%)

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
           +  A  ++++               +++ +++  +++ +++   PE R +  +V  ++ +
Sbjct: 158 DLTAELHRQLVTSRLFEQVTAGVPPVTDQDVRTAFDERRDQMQVPEQRELRNIVVDSRDK 217

Query: 283 ADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           AD+  + L  G  F  LA     ++    +  +LG      + D   AD+ F+    G F
Sbjct: 218 ADDLRRRLDDGADFATLARADSMDESTKQAGGALGKLPATAL-DQPFADAAFTTPSGGLF 276

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE-DYKRLEEFL 395
              +   FG+ +  V+ I P+  ++F++V +++   +   +A +  +E   +R+ +  
Sbjct: 277 -GPVQTRFGWNLGQVAGITPAVPLTFEQVAENLRATLTDERAGDAWREWLGERIRDAR 333


>gi|186475788|ref|YP_001857258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
 gi|184192247|gb|ACC70212.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
          Length = 259

 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 63/145 (43%), Gaps = 4/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               KK + ++ E++A+Y++  ++    E   +  ++  N+++A +    +K G  F  L
Sbjct: 103 ESYVKKNQPTDAEVKAKYDELVKQIGGKEY-HLHHILVENEQQAKDLIAKIKGGASFEDL 161

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    +S         A +   L K       +H  FG+ I  V ++
Sbjct: 162 AKQFSKDPGSGKNGGDLDWSDPKAYVPEFAAAAEKLQKGQMTDEPVHTQFGWHIIRVDDV 221

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           + +    F++VK  IA QM+  K  
Sbjct: 222 RQTPPPPFEQVKAQIAQQMQQEKLQ 246



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 56/159 (35%), Gaps = 10/159 (6%)

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAE--------EVSSKANQLVLEYSKEGKNFRD 519
           I+  +        EV     +  K +   E        E   +A  L+ +  K G +F D
Sbjct: 102 IESYVKKNQPTDAEVKAKYDELVKQIGGKEYHLHHILVENEQQAKDLIAKI-KGGASFED 160

Query: 520 IGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
           + K       +      +D ++ K +  +  +         +   P+     + + +V +
Sbjct: 161 LAKQFSKDPGSGKNGGDLDWSDPKAYVPEFAAAAEKLQKGQMTDEPVHTQFGWHIIRVDD 220

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +  P    ++  + + Q M ++ L +    L+++  V 
Sbjct: 221 VRQTPPPPFEQVKAQIAQQMQQEKLQAFEENLRAKAKVQ 259



 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 53/163 (32%), Gaps = 18/163 (11%)

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASE-----KVKEDYKRLEEFLA---LGTSMDEI 404
           + +       +  EVK      ++     E      + E+ ++ ++ +A    G S +++
Sbjct: 102 IESYVKKNQPTDAEVKAKYDELVKQIGGKEYHLHHILVENEQQAKDLIAKIKGGASFEDL 161

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           +++        P     G D+   +  A     +              D  V    G + 
Sbjct: 162 AKQFS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAEKLQKGQMTDEPVHTQFG-WH 214

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSSKAN 504
            +++ +         E+V   + +  +  K     E + +KA 
Sbjct: 215 IIRVDDVRQTPPPPFEQVKAQIAQQMQQEKLQAFEENLRAKAK 257


>gi|152984838|ref|YP_001346133.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           PA7]
 gi|150959996|gb|ABR82021.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           PA7]
          Length = 430

 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/408 (11%), Positives = 131/408 (32%), Gaps = 64/408 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S      ++    + ++ G  +  E      L +++L+ L+     
Sbjct: 31  DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G+      +   +A       + N  S + F + L R+G++  +  D   + +
Sbjct: 86  QQIGDRSGIRISDEELNQAMATI----AQRNGMSLEQFQAALTRDGLSYADARDQVRREM 141

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQA-------KRFYFENRSVDYIV-LNNRHVPAIADPSN 210
             + V        ++ S   +           +   E R  + ++ +       +   + 
Sbjct: 142 VISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASSDVIQAAA 201

Query: 211 AVLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
               + +++ K   ++                     ++ + +          + + +  
Sbjct: 202 RQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSLAVGDVT 261

Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
                     +    EK        +   V  ++            +K A + ++ ++ G
Sbjct: 262 EPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSDAETEKLAQKLYERIQSG 321

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F +LA+    + G +L+   L     E +        + +   +G+ +      FG+ 
Sbjct: 322 EDFGELAKSFSEDPGSALNGGDLNWIDPEALV-PEFRQ-VMNDTPQGELSKPFRSQFGWH 379

Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           I  V   +    +  F+E  +   + +R  K  E+++   +++ +   
Sbjct: 380 ILQVLGRRATDSSEKFRE--QQAVSVLRNRKYDEELQAWLRQIRDEAY 425



 Score = 77.3 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 104/321 (32%), Gaps = 42/321 (13%)

Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGINEKE-YIDHYTKMLSRTDVVGM 167
               RV   +    +   + ++   +V  + L R   +  +        + L   ++   
Sbjct: 28  VPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVLTQQVLERLIIENIQQQ 87

Query: 168 F--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
                G+R S+  L+QA     +   +                ++A             R
Sbjct: 88  IGDRSGIRISDEELNQAMATIAQRNGMSLEQFQAALTRDGLSYADA-------------R 134

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--- 282
               + +           ++I++S  E++     +  K    E   +  ++ P  +    
Sbjct: 135 DQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASS 194

Query: 283 ---------ADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIF 330
                    A E +Q LK+G  F QLA  +     +L    +G      +P       I 
Sbjct: 195 DVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQP-FDSMIG 253

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASE 382
           SLA  GD T  +    G++I  +   +    +   EV          +I +     K ++
Sbjct: 254 SLA-VGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSDAETEKLAQ 312

Query: 383 KVKEDYKRLEEFLALGTSMDE 403
           K+ E  +  E+F  L  S  E
Sbjct: 313 KLYERIQSGEDFGELAKSFSE 333


>gi|320333920|ref|YP_004170631.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           maricopensis DSM 21211]
 gi|319755209|gb|ADV66966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           maricopensis DSM 21211]
          Length = 639

 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/410 (13%), Positives = 122/410 (29%), Gaps = 103/410 (25%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDA------LFSVSGSSTVVSVGRQKVPFS 54
           ML+   + ++  + ++ L+VL V  ++  ++        L   +  +  V V    +   
Sbjct: 1   MLQGGIQVNQKALVRVLLIVLAVMLVLGMVASFTPLLGNLGGQNKGNPAVKVNGTVITDQ 60

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
              +     +   +  +G   +            I+++ V    L Q   D   +     
Sbjct: 61  DLES-----VRRGNPVLGLTQDGVLGDDF--KTAIVESKVQETLLKQGASDQ--QVSRAE 111

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V   +++      +    S+  +V RL + G  +  + +     L+    +         
Sbjct: 112 VNDAVSK---LREQLGLKSNKEWVDRLQQYGFTDASFREAQRTQLAWQKKLKALQ----- 163

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
                                            P+ A L  ++  + D +++        
Sbjct: 164 --------------------------DATPKGTPAEAQL--YYTLHPDEFKS-------- 187

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
                                                  Q+   ++ +A +     K G 
Sbjct: 188 --------------------------------EARIVGRQIAVSSEAKAKQLLAQAKGGA 215

Query: 295 KFIQLA-------EEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            F +LA       +++G +L  I  G     +K  +P   + ++ F+L + G  T V+  
Sbjct: 216 DFAKLASENSTVNKDRGGALGPIENGEPKPVAKITLP-AEVGEAAFALTQGG-LTDVVKS 273

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
              + I  V    P+ T  F+ V+    + +   K    V+  Y  L   
Sbjct: 274 GDKFYIVKVERFVPASTQPFEAVRSKAIDAVTKQKQDAAVEAWYTDLRNK 323



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 79/209 (37%), Gaps = 13/209 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQ 298
               + ++I++ +++  Y+KN   Y +P    + ++ F ++++A     +     K    
Sbjct: 421 AYGARDVKITDAQVRDAYQKNISAYRTPASANISEISFASREKALAFRTAFAASPKNLSS 480

Query: 299 LAEEQGKS---LSDISLGSFSKEYIPD--VSLADSIFSLAK-----KGDFTPVIHGSFGY 348
            A   G +   L  +  G   +   P     L  +++   +     +G  + V+  +  +
Sbjct: 481 SAARAGGTVNELGTVQQGQADQSGQPKLNPLLDKAVYDAGRLEPAGEGSLSDVVEVNGRF 540

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI--SR 406
            +A+V ++    T    EV   +   +     ++  +   +   + L +  S+D++  ++
Sbjct: 541 SLAYVRDLVRGSTKPLSEVSDQVRETLLQEARTQAGQAYLQAQLKGLKITKSLDKVLAAQ 600

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
            +++ +         G    G      P 
Sbjct: 601 EKRVAAQAPKTTPAGGTGTSGAAQGTTPA 629



 Score = 45.8 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 41/154 (26%), Gaps = 1/154 (0%)

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
           F A   ++   + R      +L  V     D  G+        + +      +       
Sbjct: 471 FAASPKNLSSSAARAGGTVNELGTVQQGQADQSGQPKLNPLLDKAVYDAGRLEPAGEGSL 530

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
             V   +G +    +++ +    + L EV   V++        +   +   Q  L+  K 
Sbjct: 531 SDVVEVNGRFSLAYVRDLVRGSTKPLSEVSDQVRETLLQEARTQAGQAYL-QAQLKGLKI 589

Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
            K+   +       +                G  
Sbjct: 590 TKSLDKVLAAQEKRVAAQAPKTTPAGGTGTSGAA 623


>gi|203287575|ref|YP_002222590.1| basic membrane protein [Borrelia recurrentis A1]
 gi|201084795|gb|ACH94369.1| basic membrane protein [Borrelia recurrentis A1]
          Length = 336

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/410 (13%), Positives = 124/410 (30%), Gaps = 99/410 (24%)

Query: 22  FVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
           F+ FL++ +         +  V+ +     + +  + F +     +  + +  G  +++ 
Sbjct: 4   FLCFLLFCVLGITSFAQNTPVVI-INLHSNEIITKTEFDSK----VNTLKKTQGRDLSNI 58

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
                   K++L  L++     Q     G++     V   I             + +   
Sbjct: 59  E------KKQVLQVLIADVLFGQEALKQGIKVADDEVMQTIRS----QFGLASLTDEQIK 108

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
             +  +G N  E +    + L+   +V                             + + 
Sbjct: 109 QMIESQGTNWNELLASMKRSLAAQKLV-----------------------------LKIA 139

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
                 I  PS   + +++E  K  +  P+  RIS++ F   +K++   +          
Sbjct: 140 QPKFSEIKAPSEKEVIEYYEANKTKFVNPDIARISHVFFSAKDKKRSEVL---------- 189

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD----ISLG 313
                                 ++A +  + +K  K  F +   +             LG
Sbjct: 190 ----------------------EQAKDIAKQIKSSKITFEEAVRKYSNDEGSKVKNGDLG 227

Query: 314 SFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-- 366
             ++       +        +F L KKG+ +  I    G+ I  V+ +     +  Q+  
Sbjct: 228 FLARGDQSAQNVLGADFIKEVFVL-KKGNVSNPISSKEGFHIVKVTEMYSQKFLGLQDKI 286

Query: 367 -------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                  VK  I N M      + V +  + + + L    S+  +    K
Sbjct: 287 SPNVNMTVKDAIKNNMINVHQQQIVAKIQQEIYDKLNKSASIQILDSSLK 336


>gi|194018008|ref|ZP_03056615.1| YacD [Bacillus pumilus ATCC 7061]
 gi|194010345|gb|EDW19920.1| YacD [Bacillus pumilus ATCC 7061]
          Length = 302

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/392 (14%), Positives = 115/392 (29%), Gaps = 120/392 (30%)

Query: 5   IRKASRTWVAKIFLVV----LFVPFLIWG--LSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
           +R  +R     I +++    + + +++    +S A  +      + S+G++KV    ++ 
Sbjct: 1   MRLKARVVWTFILVLLMINAVVIAYVLTKSQMSQASSNGKSGEEIASIGKEKVTRQEWLK 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
             +   G                     K  L+ +++   +DQ  ++  LE     +  E
Sbjct: 61  KMEDRYG---------------------KATLEQMINQKVVDQLAKENKLEVSSKEINRE 99

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           +    +     N F  D           +EK++ +     +    ++             
Sbjct: 100 LL---MLKAVSNNFYEDG--------HTSEKDWTEQIRYQILLEQLL------------- 135

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                      R               A  S      ++EK KD Y+             
Sbjct: 136 ----------TRD--------------AVVSEKEAKSFYEKNKDLYQ------------- 158

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                             Y+ +           +  +V   + EA+   + LK G  F  
Sbjct: 159 ------------------YDDSY---------RIRHIVVKTKGEAENVLKDLKGGSSFEA 191

Query: 299 LAEEQG----KSLSDISLGSFSKEYIPDVSL-ADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +A E+      S     LG  ++E     +L       L         I    GY I  +
Sbjct: 192 VAAERSIDRYTSPYGGDLGFVTEEQESIPALYIQEAQKLQPDQWTKEPIETKNGYAIIQL 251

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
                  + S++EVK  I  Q+ +    EK  
Sbjct: 252 KEKLDGRSFSYEEVKNQIKRQIAMEDLGEKAN 283


>gi|288575146|ref|ZP_06393503.1| hypothetical protein Dpep_2422 [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570887|gb|EFC92444.1| hypothetical protein Dpep_2422 [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 350

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/402 (13%), Positives = 127/402 (31%), Gaps = 92/402 (22%)

Query: 1   MLEIIRKASRTWVAKIFL--VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
           ML  +R   +  +    L  V+        G   +  S +    V  +  +K+  S  + 
Sbjct: 1   MLRTLRTQVKWILVFFLLCFVLAIPLMYGVGGGKSSRSSNEDYAVAEIDGKKLMRSQLLR 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           S +  +         + +        + + +LD +V    L + ++ +G+      +   
Sbjct: 61  SVQDYVERA-----GIKDVTSTDLPMIRQMVLDQMVVQEALLKEVKALGITPSKEELDQA 115

Query: 119 IARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++        +++F + + F+  L   GI   +  +     LS+  ++            
Sbjct: 116 VSGI------EDQFPTKEAFMQYLQETGITMNDLREQLKTQLSQQMLL------------ 157

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD-NYRAPEYKRISYIL 236
                                     A A  ++  L   ++  KD  +  PE   +    
Sbjct: 158 ----------------------EEASAAAKVNDEELQALYDSVKDFVFTVPEGFEVLAAE 195

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                                                   F +Q+ A++A++ L  G  +
Sbjct: 196 ----------------------------------------FSSQEAANKAYEELSSGTSW 215

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHG-SFGYVIAHV 353
             + EE   S    S GS    ++   SL +++  +A    G +   +   S  +++ + 
Sbjct: 216 DVVLEEFSSSDITGSTGSEKPAFLKKDSLPENLAFIASMDDGQYAEPVEVASDDFIVVYR 275

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
            + K     SF++ K+ + + +   K  E  +     + E +
Sbjct: 276 KSAKDREVTSFEDAKEQLQSMVLNQKRQELQRTFLDEISEKV 317


>gi|56479153|ref|YP_160742.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
 gi|56315196|emb|CAI09841.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
          Length = 260

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           + +  K    ++ +L+ EYE  K +  S E +    ++   ++EA      L+ G+KF  
Sbjct: 104 MQDFVKTNPATDADLRKEYESIKGQMGSKEYKP-RHILVETEEEAKAIIGKLRAGEKFEA 162

Query: 299 LA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           LA   ++ G       LG  +         ++++  L K       +   FGY +  + +
Sbjct: 163 LATASKDPGSKDKGGELGWSNPGMFVKP-FSEAMVKLEKGQYSATPVKSDFGYHVIQLDD 221

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           ++     +F+EVK  +  +++  K  + V +   + +
Sbjct: 222 VRDLKAPAFEEVKPQLEQRLQQKKIEKHVADLRAKAK 258



 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 39/120 (32%), Gaps = 1/120 (0%)

Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
           E   +A  ++ +  + G+ F  +                  +    F       +     
Sbjct: 142 ETEEEAKAIIGKL-RAGEKFEALATASKDPGSKDKGGELGWSNPGMFVKPFSEAMVKLEK 200

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                 P+++   Y V ++ + +       ++    L Q + +  ++  +A L+++  V 
Sbjct: 201 GQYSATPVKSDFGYHVIQLDDVRDLKAPAFEEVKPQLEQRLQQKKIEKHVADLRAKAKVE 260


>gi|209965938|ref|YP_002298853.1| peptidyl-prolyl cis-trans isomerase family protein, putative
           [Rhodospirillum centenum SW]
 gi|209959404|gb|ACJ00041.1| peptidyl-prolyl cis-trans isomerase family protein, putative
           [Rhodospirillum centenum SW]
          Length = 315

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 91/241 (37%), Gaps = 18/241 (7%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
           K + RT+V+            L           + V+  ++           +  V    
Sbjct: 56  KEIRRTEVLAALQQLPPQVQQLPLPMVYPAVLEQVVNAHLVTQAGFKDKLQDTTEV---- 111

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
               K   +A E + +           K   +S+  ++ ++++  ++    +      ++
Sbjct: 112 ----KQRLKAAEERFVQEAFLKKAIDAK---MSDALVKKKFDEWLKENPPQDEVRARHIL 164

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSL 332
              ++EA+   + +K G  F +LA +Q    +       LG F+K+ + +   A + F++
Sbjct: 165 VQTKEEAEALIKQIKGGADFNKLAADQKIDTAAAQQQGDLGYFTKDQMVEP-FAKAAFAM 223

Query: 333 AKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            K GD +   +   FG+ +  V + +     +++E   ++   +    A + V+   K+ 
Sbjct: 224 -KPGDVSQTPVETQFGWHVIKVEDKRKQTPPTYEEAAPELRQVVAQDIAGDVVEGLRKQA 282

Query: 392 E 392
           +
Sbjct: 283 K 283



 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 6/137 (4%)

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN-EN 541
             +V+     V+T EE      + +++  K G +F  +  +         Q   +     
Sbjct: 155 QDEVRARHILVQTKEEA-----EALIKQIKGGADFNKLAADQKIDTAAAQQQGDLGYFTK 209

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601
                      F+     V   P+E    + V KV + +       ++    L Q++ +D
Sbjct: 210 DQMVEPFAKAAFAMKPGDVSQTPVETQFGWHVIKVEDKRKQTPPTYEEAAPELRQVVAQD 269

Query: 602 LLDSVIAYLKSQYSVTV 618
           +   V+  L+ Q  V +
Sbjct: 270 IAGDVVEGLRKQAKVEM 286


>gi|170703395|ref|ZP_02894173.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria IOP40-10]
 gi|170131694|gb|EDT00244.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria IOP40-10]
          Length = 260

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 3/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               KK + +  E++A Y++  +         +  ++  ++++A +    +K G KF  L
Sbjct: 103 ESFLKKNQPTEAEVKARYDELVKGAGGNREYHLHHILVDSEQQAKDLIAKIKGGAKFEDL 162

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           A++  K       G       P   + +  +     +KG  T   +   FG+ I    +I
Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRADDI 222

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +      F +VK  IA Q+   K  
Sbjct: 223 RDVAPPPFDQVKAQIAQQLVQQKLQ 247



 Score = 40.4 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G  F D+ K       +      +D ++ K +  +  +        
Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P++    + + +  + +       D+  + + Q + +  L +    L+ Q  + 
Sbjct: 202 QMTDTPVKTQFGWHIIRADDIRDVAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260


>gi|303327130|ref|ZP_07357572.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863118|gb|EFL86050.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           sp. 3_1_syn3]
          Length = 312

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/387 (13%), Positives = 113/387 (29%), Gaps = 91/387 (23%)

Query: 15  KIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           K F+++L + F    G+  A      +     V  Q +       +   ELG     +  
Sbjct: 3   KTFILLLAIWFCGVCGVQAAQL----NKVAAVVNGQVITMFDLQKTALPELGRAR--LNP 56

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
              ++      + +K+LD ++    L Q  + + +      V  E+ +            
Sbjct: 57  NNPAQAKEVEKVFRKVLDMMIMDILLGQEAKRLKISVSPSEVDNELVKMMKARNLT---- 112

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
              F ++LA++ I+  E   ++ K L R  ++GM                          
Sbjct: 113 KQQFEAQLAQQKISIDEIRQNFEKSLLRQKIMGM-------------------------- 146

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
                   V      + A +  ++E +KDN                              
Sbjct: 147 -------EVGRKVVVTPAEIKAYYEAHKDNL----------------------------- 170

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISL 312
              Y+++              LV+     A      +K GK  F + A +   + +    
Sbjct: 171 ---YDRSGLHMGV--------LVYAPNVNAKSIAAQIKSGKLSFEEAAAKYSIAPNKDKG 219

Query: 313 GSFS--KEYIPDVSLADSIFSLAKKGDFTPVIHGSF---GYVIAHVSNIKPSFTVSFQEV 367
           G     +    +      +  + K GD T +           +           ++ ++ 
Sbjct: 220 GDMGPVEWDRLNPEWEGRLIKM-KPGDVTDIFDLQGRKAQVHLFRPGGDNAEKQLTLEQA 278

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEF 394
              I   +R  KA E+ ++   +L   
Sbjct: 279 TPQIDAILRQPKAMERFEDYTSQLRNK 305


>gi|157690854|ref|YP_001485316.1| peptidylprolyl isomerase [Bacillus pumilus SAFR-032]
 gi|157679612|gb|ABV60756.1| possible peptidylprolyl isomerase [Bacillus pumilus SAFR-032]
          Length = 302

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/392 (14%), Positives = 115/392 (29%), Gaps = 120/392 (30%)

Query: 5   IRKASRTWVAKIFLVV----LFVPFLIWG--LSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
           +R  +R     I +++    + + +++    +S A  +      + S+G++KV    ++ 
Sbjct: 1   MRLKARVVWTFILVLLMINAVVIAYVLTKSQMSQASSNGKSGEEIASIGKEKVTRQEWLK 60

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
             +   G                     K  L+ +++   ++Q  ++  LE     +  E
Sbjct: 61  KMEDRYG---------------------KATLEQMINQKVVNQLAKENKLEVSSKEINRE 99

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           +    +     N F  D           +EK++ +     +    ++             
Sbjct: 100 LL---MLKAVSNNFYEDG--------HTSEKDWTEQIRYQILLEQLL------------- 135

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                      R               A  S      ++EK KD Y+             
Sbjct: 136 ----------TRD--------------AVVSEKEAKSFYEKNKDLYQ------------- 158

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                             Y+ +           +  +V   + EA+   + LK G  F  
Sbjct: 159 ------------------YDDSY---------RIRHIVVKTKGEAENVLKDLKGGSSFEA 191

Query: 299 LAEEQG----KSLSDISLGSFSKEYIPDVSL-ADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +A E+      S     LG  ++E     +L       L         I    GY I  +
Sbjct: 192 VAAERSIDRYTSPYGGDLGFVTEEQESIPALYIQEAQKLQPDEWTKEPIETKNGYAIIQL 251

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
                  + S++EVK  I  Q+ +    EK  
Sbjct: 252 KEKLDGRSFSYEEVKNQIKRQIAMEDLGEKAN 283


>gi|317128176|ref|YP_004094458.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473124|gb|ADU29727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 293

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 14/148 (9%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ--- 303
           + ++++LQ  YEK        E      ++   ++EA + ++ ++ G+ F  LA++    
Sbjct: 137 DPTDEDLQELYEK-------GEEVEASHILVYTEEEALDIYERIENGEDFATLAQDYSED 189

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           G +     LG F +  +       + F+L    + +  +   FGY I  V++  P F   
Sbjct: 190 GSASQGGQLGYFGRGAMV-APFEVAAFNL-DVNEVSSPVESQFGYHIIKVTDRLP-FEAP 246

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391
           F+EV+  + +     K   K+ +    L
Sbjct: 247 FEEVRYMLEDTFNSQKV-NKMMDAQDEL 273


>gi|292493615|ref|YP_003529054.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
 gi|291582210|gb|ADE16667.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
          Length = 320

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 69/158 (43%), Gaps = 14/158 (8%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--------ADEAFQ-SLKKGKKFIQLA 300
               +  Y+ N+E+Y  PE   V  ++   ++         A++  + +L + K F +LA
Sbjct: 131 EALARERYQANQEQYQLPEQVKVSHILIKAEERSEEEARQLAEKVRKLALAEEKPFAELA 190

Query: 301 EEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            E  +  S       LG  ++         ++ F+L + G+ +PV+   FG+ I  +   
Sbjct: 191 VEYSEDPSVERNQGDLGFIARGKTVKP-FEEAAFALKQPGNISPVVKSRFGFHIIRLEER 249

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +P+    F +VK+ +  + + T  ++ V+    ++   
Sbjct: 250 QPAQVQPFDQVKEKLVQEAKETYLNKVVQTHLNQIRNA 287


>gi|209517935|ref|ZP_03266768.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
 gi|209501651|gb|EEA01674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
          Length = 265

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 5/170 (2%)

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
           +A     I  +   + +  KK  +S+D+L+A Y + K K  S E + V  ++  ++ EA 
Sbjct: 95  QAQATWEIEIVRAYMQDFLKKNPVSDDQLKAMYNEMKSKGGSTEYK-VRHILVKDEGEAK 153

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           +    L KG  F  LA+E   S S      LG  +   +     AD++  L K       
Sbjct: 154 DIIARLNKGASFGDLAKESIDSDSRYNGGDLGWKTSSKVVKP-FADAVSHLHKGEYTQTP 212

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +   +G+ +  V + +     SF+E+K  +  Q +       VK    + 
Sbjct: 213 VKTGYGFHVIEVDDTRALQVPSFEEMKPMLYQQAQEELVDRMVKNLRAKA 262


>gi|228932540|ref|ZP_04095421.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827230|gb|EEM72983.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 285

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 72/206 (34%), Gaps = 30/206 (14%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240
           Y ++    +      S   + +  +K K  Y             +     +         
Sbjct: 57  YEMMAQDVITKKYKVSEDDVEKEVQKAKSQYGDQFKNILKNNGLKDEADFKNQIKFKLAM 116

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
            +  K  ++  +++A Y+        PEI+    ++  ++ EA E  + L  G  F +LA
Sbjct: 117 NEAIKKSVTEKDVKAHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167

Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +++ + L        LG F+   +       + + L   G  +  +    GY I  +++ 
Sbjct: 168 KQESQDLLSKEKGGDLGYFNSGRMA-PEFETAAYKL-NVGQISNPVKSPNGYHIIKLTDK 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382
           K      + EVK  I   +   + + 
Sbjct: 226 KE--LQPYDEVKDSIRKNLEEERIAN 249



 Score = 37.3 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 48/131 (36%), Gaps = 10/131 (7%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +VK     +++ +      + + K +++ L  G S +E++++E    +        G   
Sbjct: 128 DVKAHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+         +     +  +     +   +     Y  +++ +      +  +EV   
Sbjct: 188 SGR------MAPEFETAAYKLNVGQISNPVKS--PNGYHIIKLTDKKE--LQPYDEVKDS 237

Query: 486 VKKDWKTVKTA 496
           ++K+ +  + A
Sbjct: 238 IRKNLEEERIA 248


>gi|206967650|ref|ZP_03228606.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus AH1134]
 gi|206736570|gb|EDZ53717.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus AH1134]
          Length = 289

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 90/246 (36%), Gaps = 39/246 (15%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I ++E+ D       +  +  M +  +          K +  E++ VD            
Sbjct: 35  ITKEEFYDQMKTQAGKQVLNNMVMEKVL--------IKNYKVEDKDVDKKF--------- 77

Query: 206 ADPSNAVLTQWFEKY----KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
               + +  Q+ +++    K      E  +         EK  +  I++ +++A++E  K
Sbjct: 78  ----DEMKKQYGDQFDTLLKQQGIKEETIKTGVRAQLAQEKAVEQSITDKDVKAKFEDYK 133

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317
           ++           ++  +++ A +    L +GK F +LA++  +          LG F  
Sbjct: 134 KEI------KASHILVKDEETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGP 187

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             +      ++   L KKG+ +  +   FGY I  V++        F + K DI   +  
Sbjct: 188 GKMVK-EFEEAAQKL-KKGEVSEPVKTQFGYHIIKVTDNHADAN--FDKAKTDIKKSLVQ 243

Query: 378 TKASEK 383
            K  + 
Sbjct: 244 EKTQDA 249


>gi|229016342|ref|ZP_04173287.1| Foldase protein prsA 1 [Bacillus cereus AH1273]
 gi|229022583|ref|ZP_04179110.1| Foldase protein prsA 1 [Bacillus cereus AH1272]
 gi|228738710|gb|EEL89179.1| Foldase protein prsA 1 [Bacillus cereus AH1272]
 gi|228744934|gb|EEL94991.1| Foldase protein prsA 1 [Bacillus cereus AH1273]
          Length = 286

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 87/243 (35%), Gaps = 33/243 (13%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I ++E+ +       +  +  M +                  E   +    ++++ V   
Sbjct: 36  ITKEEFYNQMKTQAGKQVLNNMVM------------------EKVLIKNYKVDDKEVDKK 77

Query: 206 ADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
            D     +   F+   K      E  +         E+  +  I++ +L+A+YE  K   
Sbjct: 78  YDEMKKQVGDQFDTLLKQQGLKEETVKNGVRASLAQEQAIEKSITDKDLKAKYEDYK--- 134

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320
              +      ++  +++ A +  + L +GK F +LA++  +          LG F  + +
Sbjct: 135 ---QEIKASHILVKDEETAKKVKEELAQGKSFEELAKKYSEDPGSKEKGGDLGFFGPDKM 191

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 ++   L KK + +  +    GY I  V++       +F + K DI  ++   K 
Sbjct: 192 VK-EFDEAARKL-KKDEVSEPVKTQHGYHIIKVTDTHAD--KTFDQAKADIKKEVVQEKT 247

Query: 381 SEK 383
            + 
Sbjct: 248 QDA 250



 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 43/222 (19%)

Query: 279 NQKEADEAFQSLKK--GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           + KE D+ +  +KK  G +F  L ++QG     +  G  +              SLA++ 
Sbjct: 70  DDKEVDKKYDEMKKQVGDQFDTLLKQQGLKEETVKNGVRA--------------SLAQEQ 115

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
                               K       +   +D   +++ +    K +E  K+++E LA
Sbjct: 116 AI-----------------EKSITDKDLKAKYEDYKQEIKASHILVKDEETAKKVKEELA 158

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
            G S +E++++              G     K V       + L +    +   ++    
Sbjct: 159 QGKSFEELAKKYSEDPGSKEKGGDLGFFGPDKMVKEFDEAARKLKKDEVSEPVKTQ---- 214

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
                 Y  +++ ++    D+  ++   D+KK+    KT + 
Sbjct: 215 ----HGYHIIKVTDTH--ADKTFDQAKADIKKEVVQEKTQDA 250


>gi|124266954|ref|YP_001020958.1| putative exported isomerase [Methylibium petroleiphilum PM1]
 gi|124259729|gb|ABM94723.1| putative exported isomerase [Methylibium petroleiphilum PM1]
          Length = 272

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 4/144 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            + +KK  +++ E+QAEY+K K +    E R V  ++   + EA      ++ G  F + 
Sbjct: 112 ADFQKKNPVTDAEVQAEYDKYKAQAGDKEYR-VRHILVETEDEAKALIAQIQGGASFEET 170

Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G       P       ++++  L K       I   +G+ I  + ++
Sbjct: 171 AKKSSKDPGSAPNGGDLDWAAPGSFVPEFSNAMVKLEKGKMTEAPIKSQYGFHILKLEDV 230

Query: 357 KPSFTVSFQEVKKDIANQMRITKA 380
           + +      EVK  I  ++   K 
Sbjct: 231 RDAQFPPLAEVKPQIEQRLSQQKV 254


>gi|203284033|ref|YP_002221773.1| basic membrane protein [Borrelia duttonii Ly]
 gi|201083476|gb|ACH93067.1| basic membrane protein [Borrelia duttonii Ly]
          Length = 336

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/410 (13%), Positives = 124/410 (30%), Gaps = 99/410 (24%)

Query: 22  FVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
           F+ FL++ +         +  V+ +     + +  + F +     +  + +  G  +++ 
Sbjct: 4   FLCFLLFCVLGITSFAQNTPVVI-INLHSNEIITKTEFESK----VNTLKKTQGRDLSNI 58

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
                   K++L  L++     Q     G++     V   I             + +   
Sbjct: 59  E------KKQVLQVLIADVLFGQEALKQGIKVADDEVMQTIRS----QFGLASLTDEQIK 108

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
             +  +G N  E +    + L+   +V                             + + 
Sbjct: 109 QMIESQGTNWNELLASMKRSLAAQKLV-----------------------------LKIA 139

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
                 I  PS   + +++E  K  +  P+  RIS++ F   +K++   +          
Sbjct: 140 QPKFSEIKAPSEKEVIEYYEANKTKFVNPDIARISHVFFSAKDKKRSEVL---------- 189

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD----ISLG 313
                                 ++A +  + +K  K  F +   +             LG
Sbjct: 190 ----------------------EQAKDIAKQIKSSKITFEEAVRKYSNDEGSKVKNGDLG 227

Query: 314 SFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-- 366
             ++       +        +F L KKG+ +  I    G+ I  V+ +     +  Q+  
Sbjct: 228 FLARGDQSAQNVLGADFIKEVFVL-KKGNVSNPISSKEGFHIVKVTEMYSQKFLGLQDKI 286

Query: 367 -------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                  VK  I N M      + V +  + + + L    S+  +    K
Sbjct: 287 SPNVNMTVKDAIKNNMINVHQQQIVAKIQQEIYDKLNKSASIQILDSSLK 336


>gi|121956444|sp|Q4ZMG7|SURA_PSEU2 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 428

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/423 (12%), Positives = 132/423 (31%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 19  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 73

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++  +  +   + +
Sbjct: 74  LQMGERSGIRVSDEELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 129

Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V                 + L  D  K    E   +  I++      +      A 
Sbjct: 130 IISRVRQRRVAERIQVSQQEVKNFLASDMGKAQLSEEFHLANILIATPDSASSDAIQAAA 189

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + + +  
Sbjct: 190 VKAKGIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPVGDVT 249

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            ++ A + +  ++
Sbjct: 250 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAQKIYDRIE 309

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F +LA+    + G +L+   L       +        + S   +G  +      +G
Sbjct: 310 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMSETPQGVLSKPFQTQYG 367

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + ++  A N +R  K  E+++   +++ +   +   +   ++
Sbjct: 368 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 425

Query: 407 REK 409
             +
Sbjct: 426 AAQ 428


>gi|307718672|ref|YP_003874204.1| basic membrane protein [Spirochaeta thermophila DSM 6192]
 gi|306532397|gb|ADN01931.1| basic membrane protein [Spirochaeta thermophila DSM 6192]
          Length = 346

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 65/402 (16%), Positives = 129/402 (32%), Gaps = 84/402 (20%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF--INSWKQELGMISQKIG 72
           KI L V+ +          LF   G      V R K+          +K ++ ++ +++G
Sbjct: 5   KIVLGVVVMG---------LFPAFGQIIDAPVARVKLTKLEVITQRQFKADVELLEKQLG 55

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
             ++ E        K++LD  +    + Q  E   L      +   IA+           
Sbjct: 56  RELSLEE------RKQLLDARIGEILIYQAAEREYLSVTQEELSQAIAQYK--QSVAPNV 107

Query: 133 SHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           S   F   +  +G +  +++ +   K L                      A+++ ++   
Sbjct: 108 SDQEFQRLIESQGGMTWEQFQEQMKKRLI---------------------AEKYLYQK-- 144

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
                   + +  +  PS   + + + +   N+ APE  R S+I  D          S++
Sbjct: 145 ------KGQEIQNVPAPSEEEIRRVYNENISNFTAPEMVRYSHIFIDTRGL------SDE 192

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK---KFIQLAEEQGKSLS 308
           E +  Y +                    +KE D +    ++        Q +  QG  + 
Sbjct: 193 EKKKAYNR----------------ALQVKKEVDGSLAKFREAVEKYSDDQASRYQGGDVG 236

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV------ 362
            +      +E          IFSL      + V+  + GY I  V+       +      
Sbjct: 237 YLLRTDKQRESFLGKEFFSKIFSLPLN-KVSDVLASNVGYHIVVVTEHHEPRLLGLDDRL 295

Query: 363 ---SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
              S Q V+  I   +   K  E  ++  ++L E L     +
Sbjct: 296 LPNSKQTVRDQITALLVGQKRQEAYQKALQKLIEELRSQADV 337


>gi|260171516|ref|ZP_05757928.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D2]
 gi|315919830|ref|ZP_07916070.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693705|gb|EFS30540.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 713

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 96/722 (13%), Positives = 212/722 (29%), Gaps = 125/722 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     +  V  V    +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117
           +   ++    G    ++  ++  +  ++  + V+   +++  + +GL      +      
Sbjct: 61  EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLVEKEAKALGLTVSAAEIQDILKA 119

Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150
                + ++P F       F  D+    L     ++E +                     
Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWTFIQK 178

Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179
                     Y    +K L    V                + G+  S+++          
Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238

Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224
                    +  + Y E R V YI +       +   +    D + A L    + Y   +
Sbjct: 239 LKDLYNKKKEQFKQYQETRDVKYIDVQVTASAEDRAAIQKEVDEATAQLATTTDDYTS-F 297

Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEY-------EKNKEKYFSP------ 267
                    Y+    ++     ++     +  + A Y       +     +         
Sbjct: 298 IRSVGSEAPYVDLFYNKTAFPSDVVARLDSASVGAIYGPYYNGADNTINSFKVVAKAAAA 357

Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319
           +     Q+    +        AD  + ++K G  F  +A++ G     + I+   +    
Sbjct: 358 DSVEFRQIQVYAEDAVKTKTLADSIYNAIKGGANFADVAKKYGQTGDANWITSAQYEGAQ 417

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
           +   +L     S         +++   G   VI  V+N K         V   I  ++  
Sbjct: 418 VDGDNL--KFISAINNTGVNELVNLPMGQANVILQVTNKKSVKDKYKVAV---IKREVEF 472

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
           +K  E     Y    +F+A   S++++    +     L  +D          +  +   +
Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528

Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           + L   F K  P          +    M V +    P   R L+ V   ++ +    K A
Sbjct: 529 EALRWTFDKAKPGDVSGLYECGESDHLMVVGLVSIKPEGYRPLKAVQDQLRAEIVKDKKA 588

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
           E++ +           + K   D+   +  SL                    +    S  
Sbjct: 589 EKIMADMKAANATSFNQYK---DMANAVSDSLKMVTFAAPAYVSALRSSEPLVGAYASVA 645

Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
            E     PI+      V +V    K+    +     + LT M  +   + ++  L  + +
Sbjct: 646 PENQLSAPIKGNAGVFVLQVYGRDKLNETFDAKAEEATLTNMHAR-FANRLMNDLYLKAN 704

Query: 616 VT 617
           V 
Sbjct: 705 VK 706


>gi|237803361|ref|ZP_04590946.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331025342|gb|EGI05398.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 440

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 108/377 (28%), Gaps = 85/377 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S    V    +  S        E+     K G  V    A    L K++LD L+     
Sbjct: 31  DSVAAIVDNDVIMKSQVDQRVH-EVQQTIAKRGSGVPPAEA----LQKQVLDRLILENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   IA       + N  S + F + L  +G++  +  +   + +
Sbjct: 86  LQMGERSGIRVSDDELNQAIASI----AQRNNMSVEQFRAALIHDGVSYDDAREQVRREM 141

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             + V                       + R           V      S   +  +   
Sbjct: 142 IISRV----------------------RQRR-----------VAERIQVSEQEVKNFLAS 168

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            +   +  E   ++ IL    +      I    L+                         
Sbjct: 169 DQGKAQLSEEFHLANILIATPDSASSDVIQAAALK------------------------- 203

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
              A   +   KKG  F +LA        +L    +G      +P     D + S+   G
Sbjct: 204 ---AKSIYDQAKKGADFAKLAATTSSSENALEGGDMGWRKAAQLP-PPFGDMLSSMP-IG 258

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVS--FQEVK--------KDIANQMRITKASEKVKE 386
           D TP      G++I  +   +     +    EV          +I ++      ++K+ E
Sbjct: 259 DVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYE 318

Query: 387 DYKRLEEFLALGTSMDE 403
             +  E+F AL  S  E
Sbjct: 319 RIENGEDFAALAKSFSE 335


>gi|222094778|ref|YP_002528838.1| peptidylprolyl isomerase [Bacillus cereus Q1]
 gi|221238836|gb|ACM11546.1| protein export protein prsa [Bacillus cereus Q1]
          Length = 286

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 79/208 (37%), Gaps = 17/208 (8%)

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY-KDNYRA 226
           F   M+ S            E   +    + ++ V    D     +   F+   K     
Sbjct: 40  FYEQMKNSPTGKQTLNNMVLEKVLIKNYKVEDKDVDKKYDEMKKQIGDQFDTLLKQPGVT 99

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
            +  + S       EK  +  I++ E++  Y+        PEI+    ++  ++  A + 
Sbjct: 100 EKTLKNSVRAQLAQEKAVEQAITDKEVKDYYK--------PEIK-ASHILVKDEATAKKV 150

Query: 287 FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            + L +GK F +LA++  +          LG F    +      D+ + L KK + +  +
Sbjct: 151 KEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVK-EFEDAAYKL-KKDEVSEPV 208

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
              FGY I  V++IK     SF++ K D
Sbjct: 209 KSQFGYHIIKVTDIKEPE-KSFEQSKAD 235


>gi|330878394|gb|EGH12543.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963847|gb|EGH64107.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 440

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V      +  L  ++LD L+     
Sbjct: 31  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPP----AADLQPQVLDRLILENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S D F + LA +G++  +  +   + +
Sbjct: 86  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVDQFRAALAHDGLSYNDAREQVRREM 141

Query: 160 SRTDVVGM-FVGGMRPSNLLL------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V        ++ S   +      DQ K    E   +  I++      +      A 
Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + I +  
Sbjct: 202 VKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPIGDVT 261

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVF---------PNQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            +  A + ++ ++
Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIE 321

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA+    + G +L+   L       +      D + S   +G+ +     ++G
Sbjct: 322 NGEDFATLAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRD-VMSSTPQGELSKPFKTAYG 379

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + +   A + +R  K  E+++   +++ +   +   +   ++
Sbjct: 380 WHVLEVLGRRATDATG--QARDQQALSVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437

Query: 407 REK 409
             +
Sbjct: 438 AAQ 440


>gi|302130724|ref|ZP_07256714.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 440

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/423 (12%), Positives = 137/423 (32%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V      +  L  ++LD L+     
Sbjct: 31  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPP----AADLQPQVLDRLILENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++ ++  +   + +
Sbjct: 86  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYEDAREQVRREM 141

Query: 160 SRTDVVGM-FVGGMRPSNLLL------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V        ++ S   +      DQ K    E   +  I++      +      A 
Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + I +  
Sbjct: 202 VKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPIGDVT 261

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVF---------PNQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            +  A + ++ ++
Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIE 321

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA+    + G +L+   L       +      D + S   +G+ +     ++G
Sbjct: 322 NGEDFATLAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRD-VMSSTPQGELSKPFKTAYG 379

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + +   A + +R  K  E+++   +++ +   +   +   ++
Sbjct: 380 WHVLEVLGRRATDATG--QARDQQALSVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437

Query: 407 REK 409
             +
Sbjct: 438 AAQ 440


>gi|313672046|ref|YP_004050157.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938802|gb|ADR17994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 345

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 80/170 (47%), Gaps = 2/170 (1%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           + +     +++    F   + + +I+IS +EL+A YE+  +   S     + Q+V  ++ 
Sbjct: 152 EKFEKLMEEKLLAQKFLEDKIKSEIKISEEELRAYYEEFIKTKQSKVYYHIYQIVNEDKH 211

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTP 340
           + +EA++ LK GK+F  +A+E        + G      I +   + D + +L K  + + 
Sbjct: 212 KIEEAYKLLKSGKRFEDVAKEYSSGPEAENGGDMGIVDIENFPPVFDLVKNL-KPNEISK 270

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           ++   +GY I  +     S   SF+E+K  + +++   K  + ++   K 
Sbjct: 271 IVSSEYGYHIIMLKETISSDKPSFEEIKDLLLDELIAEKKDQYLENYLKE 320



 Score = 38.8 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 505 QLVLEYSKEGKNFRDIGKNL--GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
           +   +  K GK F D+ K    G        +  +D EN    +D +  +   P E+ K 
Sbjct: 214 EEAYKLLKSGKRFEDVAKEYSSGPEAENGGDMGIVDIENFPPVFDLVKNL--KPNEISKI 271

Query: 563 FPIENGLSYVVFKVTNSKVGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
              E G   ++ K T S   P   + KD  +  L        L++ +        V +  
Sbjct: 272 VSSEYGYHIIMLKETISSDKPSFEEIKDLLLDELIAEKKDQYLENYLKEKMKDVKVEISP 331

Query: 621 NL 622
           + 
Sbjct: 332 DF 333


>gi|224827238|ref|ZP_03700332.1| SurA domain protein [Lutiella nitroferrum 2002]
 gi|224600527|gb|EEG06716.1| SurA  domain protein [Lutiella nitroferrum 2002]
          Length = 428

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/412 (12%), Positives = 130/412 (31%), Gaps = 60/412 (14%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V +  +  S      K+ +  +  +       +      L +++L+ +++    
Sbjct: 28  DRIVAVVNKSAITESDLQKRIKETVMELEARKVTPPAPDV-----LARQVLEQMITEEVQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q+    G+      +   + R        NK + +   ++LA+EG+    + +   + +
Sbjct: 83  VQYATSNGVRVSDDELQQTLERLAS----QNKLTLEAMKAQLAKEGVTFDNFREQIRRQI 138

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRF-YFENRS--------------VDYIVLNNRHVP 203
             + +        +  S+  ++Q  +     NRS               D   ++ +   
Sbjct: 139 LLSRLKEREVESRVNVSDTEVEQVLKSEQTANRSEYRLANILVSVPERADAKQIDAQSQK 198

Query: 204 AIADPSN-------AVLTQWFEKYKDNYRAPEY--KRISYILFDVHEKEKKIEI------ 248
           A    +        A +   +    +  +  +   +  S +  D  +  + ++       
Sbjct: 199 AHKALAELDAGQPFAKVAAAYSDAPNGLKGGDLGWRPASSLPLDFTKLLETMQPGSHTTV 258

Query: 249 --SNDELQAEYEKNKEKYFSP---EIRTVEQLVFPNQKEADEA---------FQSLKKGK 294
             S         + K    +P   E   V  ++    +   EA            +++G 
Sbjct: 259 IRSQQGFFIFQLQEKRSADTPLIVEQYHVRHILLRTNEAVSEADAKTRLLQIRDRIERGA 318

Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F ++A+   +  S      LG  +       +   ++ SL      +  +   FG+ + 
Sbjct: 319 SFEEMAKLYSEDASNTRGGDLGWVNLGDTV-PTFEQAMTSLPLN-TVSQPVRSPFGWHLI 376

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
            V   +          K  +  Q+R  K  E   +  ++L +   +   ++E
Sbjct: 377 KVEGKRTQDVAQ-DREKMMVKQQIRARKIDEAYLDWVRQLRDSAFVDDRLEE 427


>gi|328949546|ref|YP_004366881.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus
           hydrothermalis DSM 14884]
 gi|328449870|gb|AEB10771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus
           hydrothermalis DSM 14884]
          Length = 611

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 95/655 (14%), Positives = 186/655 (28%), Gaps = 142/655 (21%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSFINSWKQELGMIS 68
             +   +L V F +  +   LF+  G+      TV+ V  + V         + EL  + 
Sbjct: 8   ITVIFGILAVAFALGTI--FLFTPQGNPQQEGRTVLWVNGEPV--------RELELARLQ 57

Query: 69  QKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
           Q    F +N E A    +D   L+ ++    L Q      +   + +V  ++ +      
Sbjct: 58  QTTPLFALNPEGALKPLIDTYFLEQVILLKALAQDAAR--VRVSNSKVRQQVDQI---RE 112

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
           +    +   +   L + G  +    D     L     +                      
Sbjct: 113 RFGLETRQDYSDFLQQIGYTDATLRDEIRTQLRINKRLEQIR------------------ 154

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
                              + S      +F  +KD YR                      
Sbjct: 155 ----------------EQVELSEEEARFYFTLHKDTYRT--------------------- 177

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK-- 305
                               +     Q+V  ++  A E  +    G++F  LA E  K  
Sbjct: 178 -------------------EDRIKARQIVVDDEALARELRERTLAGEEFAALAREYSKVA 218

Query: 306 SLSDISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +    ++G+ +    P           +AD+ F+L K+G  T VI     Y +  V    
Sbjct: 219 AEQGGAVGAEAGSDEPQPVTRIVFPKPVADAAFAL-KEGGLTDVIEAGGRYHLVQVEAFL 277

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE----------------EFLALGTSM 401
           P    SF+EV   +       K  + V++  + +                   +    + 
Sbjct: 278 PGGDASFEEVADAVRADALAAKQRQAVEDYLEAVRARATVKFADLNLFQYVNPVVATVNG 337

Query: 402 DEI----SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR-VFGKDDPLSKDHTV 456
           +EI              +P +   G      +       +QL+ R +  ++   S    V
Sbjct: 338 EEIPLRKVAELVFSDQQVPQLIQQGLGQLAVQFFFPASLDQLIARTLLLQEAEKSGQPFV 397

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLT--------DVKKDWKTVKTAEEVSSKANQLVL 508
              +     V++ +++     + EEV T         V      VK       ++ +   
Sbjct: 398 GTQEERARDVRLWKTLDVTVSE-EEVRTFYNENPQRFVIPASAQVKAVTFQDKESAETFR 456

Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV--FSGPVEMVKCFPIE 566
               EG+   D+ + LG  ++    +N              S+      P   V      
Sbjct: 457 ARLIEGEALEDLAQELGGEVVDYGTVNPRQLPPVLDQLIFFSEATFAESPEGKVSELIEL 516

Query: 567 NGLSYVVFKVTNSKVG---PVQEKDKFISYLT-QMMNKDLLDSVIAYLKSQYSVT 617
              ++ V  V + K     P +E       L        + +  +  L+    + 
Sbjct: 517 EDGTFQVALVNDQKPEVLRPFEEVQDEARALALAQKRNRIANEWLDELRENAQIE 571



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 80/190 (42%), Gaps = 8/190 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
            + +S +E++  Y +N +++  P    V+ + F +++ A+     L +G+    LA+E G
Sbjct: 414 DVTVSEEEVRTFYNENPQRFVIPASAQVKAVTFQDKESAETFRARLIEGEALEDLAQELG 473

Query: 305 KSLSDISLGSFSKEYIPDV-----SLADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIKP 358
             +  +  G+ +   +P V       +++ F+ + +G  + +I    G + +A V++ KP
Sbjct: 474 GEV--VDYGTVNPRQLPPVLDQLIFFSEATFAESPEGKVSELIELEDGTFQVALVNDQKP 531

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
                F+EV+ +        K +    E    L E   +   + E+       + +    
Sbjct: 532 EVLRPFEEVQDEARALALAQKRNRIANEWLDELRENAQIENRLTEVLAELAPPAEEANES 591

Query: 419 DFAGKDVKGK 428
           +  G+     
Sbjct: 592 NGEGETAPAP 601


>gi|257464029|ref|ZP_05628414.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D12]
 gi|317061550|ref|ZP_07926035.1| predicted protein [Fusobacterium sp. D12]
 gi|313687226|gb|EFS24061.1| predicted protein [Fusobacterium sp. D12]
          Length = 549

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 81/568 (14%), Positives = 192/568 (33%), Gaps = 87/568 (15%)

Query: 4   IIRKASRTWVAKIFLVVLFVPFLIWGLSDAL------FSVSGSSTVVSVGRQKVPFSSFI 57
            IRK  +  + K  + V+ +  +  G+           S   +     +  +K+      
Sbjct: 2   AIRKFRK--MMKPVIFVVAIAMIGSGVWLTFTNLLQHRSAGETQYAYQLNGEKISKIKIA 59

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
                 L  +++  G    S+   S+         +++     Q  ED+ ++     V  
Sbjct: 60  REENALLDQLNKM-GQGKTSKDLISL----IAFQKVINDELTLQLAEDMKIKVPSSEVKE 114

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV-------- 169
           E  +      +++  + + F   L+ +G ++K +     + L    V+  F         
Sbjct: 115 EYEKI-----EESIGNKEQFRRMLSVQGYSKKSFQAMLQENLLLQKVMEKFEEEGKKAGK 169

Query: 170 -GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA--DPSNAVLTQW---------- 216
            G +     L  +      E  + +Y  L  + V        +N  +             
Sbjct: 170 DGNLLYQEALAKKRNEMKLEKLAPEYEKLQMKVVEEKDGFKITNVDMADRVTQLMLMTGE 229

Query: 217 ------------FEKYKDNYRAPEYKRI-------------SYILFDVHEKEKKIEISND 251
                       FE+     +  + + +              Y      + + ++++   
Sbjct: 230 EETKVTEEVKKQFEEGIAFAKKAQERGVVVSKDLPINVQLAEYAKVFFEKLKSEVQVDEL 289

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVF----------PNQKEADEAFQSLKK---GKKFIQ 298
           EL   ++ N  +Y       V   V             +K+A+E  Q L K    K   +
Sbjct: 290 ELSKFFKANHNRYNQHASIDVNVAVLKIAASKEDIAAIEKKAEEILQGLTKENFAKTGEE 349

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           L ++   ++    LG F K  +      ++ FS  +   +  VI   FG  + ++  ++ 
Sbjct: 350 LQKKSTDTVIYEELGWFEKGAMVK-EFEEAAFSSKEAQIYPKVISTQFGKHLLYIQEVQE 408

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI--DLP 416
           +   +   + +++A+Q  I K+  + +   ++L++      ++  I++      +  D+ 
Sbjct: 409 NKVKAAHILFREVASQDSIAKSLREAETMKEKLDKKEVTFETLKNINKNLLFTHMFTDVD 468

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
                   V   ++    Y  ++       DD ++K   +      Y++ + KE    + 
Sbjct: 469 KSGMIPGFVNDTKLVETMYAAEMNKVQIYADDYVTKAGII------YLFSKTKEVQD-KV 521

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
             LEEV   V+ ++K  +  +E+    N
Sbjct: 522 VSLEEVRDKVQDEYKAWRAQQELQKLMN 549


>gi|291277225|ref|YP_003516997.1| major antigenic peptide PEB3\cell binding factor 2 [Helicobacter
           mustelae 12198]
 gi|290964419|emb|CBG40269.1| major antigenic peptide PEB3\cell binding factor 2 [Helicobacter
           mustelae 12198]
          Length = 278

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 14/175 (8%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
              +     +V E+ KK  I   E++  Y+ N +++   E      ++   ++EA++   
Sbjct: 96  QLLLQAWQHNVAEQAKKTVIPEAEVKKFYDDNPKQFIQQEG-HARHILVKTKEEAEKIIA 154

Query: 289 SLKKG------KKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336
            L K       +KFI+LA +     +         LG+F +  +      D++F+L+   
Sbjct: 155 ELNKAPKSRVEQKFIELANKYTTDPNAKKAQNGGDLGTFQRNQMV-PEFGDAVFALSPNT 213

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                +   +GY + ++       T+SF E K  I N  +  K  E  ++  + L
Sbjct: 214 YTKTPVKTQYGYHVVYLIKKGSPKTISFAEAKPTIENMFKERKFQEMAQDKIQHL 268


>gi|255262339|ref|ZP_05341681.1| ppic-type ppiase domain protein [Thalassiobium sp. R2A62]
 gi|255104674|gb|EET47348.1| ppic-type ppiase domain protein [Thalassiobium sp. R2A62]
          Length = 281

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 57/149 (38%), Gaps = 5/149 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++ + +QA Y+                ++    +EA      ++ G  F ++A E+   
Sbjct: 113 AVTEEAIQAAYDARFSGAEPETEYNASHILVETLEEAVAVQAEIEAGADFAEVAAEKSTG 172

Query: 307 LSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG F    +       ++  + + G  +  +   FG+ I  ++  +     +
Sbjct: 173 PSGPNGGQLGWFGPGMMV-APFEAAVVEM-EVGTLSGPVETQFGFHIITLNETRVKEAPA 230

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
            + ++ ++  +++ +   +K+ E  +  E
Sbjct: 231 IETLRPELEAELQQSAIEDKITELREAAE 259


>gi|163787467|ref|ZP_02181914.1| peptidyl-prolyl cis-trans isomerase [Flavobacteriales bacterium
           ALC-1]
 gi|159877355|gb|EDP71412.1| peptidyl-prolyl cis-trans isomerase [Flavobacteriales bacterium
           ALC-1]
          Length = 718

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 88/726 (12%), Positives = 195/726 (26%), Gaps = 121/726 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           L  IR+  R+ +  + + +    F+I  L  +    +      + +V  + +    F   
Sbjct: 4   LNKIRQ--RSLILILVIALALFSFVIGDLFKNSDALTGESQDVIATVNGKDINRLDFQQK 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            K     +  ++          +  L K ++ +           E +GL  +   +   +
Sbjct: 62  VKSYQERVGGRVSSTQAMNTIYNQELRKIVMKS---------EFEALGLSVEKDEMRDLL 112

Query: 120 A----RSPLFHGKDNKFSHDVFVSRLAR----EGINEKEY---------------IDHYT 156
                  P F  ++  F  +   + +A     +G N                        
Sbjct: 113 KTSFSSYPEFQDENGIFDVNRLNAFIANLKDLQGANPDSAPLGNFLVNYDSWTNNEQTIA 172

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQ 215
               +     M   G+  +    +       +   + Y+ +    +   + + S   ++ 
Sbjct: 173 ANAVQQTYYNMIKAGVSTTISEAEDEYFGDAKTVDIRYVQVPYTSIADSLVEVSKNDISA 232

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           + +  ++ Y+  E + I Y+ F     +   +    +L    + ++ ++      T    
Sbjct: 233 YIKNNEEKYKVDERREIVYVEFKEEASKADEDRIKADLLKL-KSDRPEWNESSKNTDTIP 291

Query: 276 VFPNQKEADE---AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
            F +    ++   A   +K    F++ A+    +    +L                 F L
Sbjct: 292 GFDSTTNVEDFINANSDIKYNDAFLRAAQLPATAKD--TLMKLDVGSYYGPYRDGEYFKL 349

Query: 333 AKKGDFTPVIHGSFGYVIAH----VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           +K      +        I       SN  P  T +  E K    + +   K+  K  +  
Sbjct: 350 SKIITVKQLPDSVNVRHILVPFAGASNAGPDVTKTLAEAKITADSILAKIKSGTKFMDLL 409

Query: 389 KRLEEFLALGTS-------MDEISRREKIVSIDLPL----VDFAGKDVKGKEVAAIPYKE 437
           +   + ++              ++   K  S D  +    V          E+       
Sbjct: 410 ELSSDKVSNENDGELEFAYNAGMAPEFKAFSFDNKVGDIDVVGTSFGYHIIEILEQKSFN 469

Query: 438 QLLFRVFGKDDPLSKDHT------------VALPDGSY---MWVQIKESIPARDRKLEE- 481
             +      D     D T            +A  DG +      +     P   ++L+E 
Sbjct: 470 TAIKVATLADKVEPSDETLSDVFNKMSKFEIAAKDGDFNALAAERKLVVKPIVFKELDEN 529

Query: 482 ----------VLTD--------------------VKKDWKTVKTAEEVSSKANQLVL--E 509
                     V                       +       K    +S +   +    E
Sbjct: 530 IPTLGSQREVVRWAFNEGTEKGEYKNFPISGFGFIVAKLVDKKPEGLMSVEDASITALPE 589

Query: 510 YSKEGK-----------NFRDIGKNLGASLLTTNQINRMDNE--NKFFGYDGISQVFSGP 556
             KE K           +  DI KN G S  T   +   +            +   F   
Sbjct: 590 IRKEKKAKMIRDKITATSIDDIAKNNGQSPRTAAAVTIKNTTLSGAGVEPQVVGAAFGLA 649

Query: 557 VEMVKCFPIENGLSYVVFKVTNS-KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
              V   PI+      V +VT   +   +      ++ L       +   V   L+    
Sbjct: 650 QG-VTSKPIDGEKGVYVIEVTKVNEATKLDNYTSIMNRLNAERKNIIQGKVYQALEKAAE 708

Query: 616 VTVHDN 621
           +  +  
Sbjct: 709 IEDNRA 714


>gi|282855468|ref|ZP_06264788.1| foldase protein PrsA [Pyramidobacter piscolens W5455]
 gi|282586694|gb|EFB91942.1| foldase protein PrsA [Pyramidobacter piscolens W5455]
          Length = 303

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 17/167 (10%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288
           ++  K   ++ + Q  Y+++KE +  P       ++               Q++A +  +
Sbjct: 115 DEAGKTPATDQDAQKYYDEHKEIFQVPAAIRASHILIRADKNMPAKDQKAAQEKAADLIR 174

Query: 289 SLKKGKK-FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            +K GK  F   A+      +      LG FSK  +       + F+L K       +  
Sbjct: 175 DIKAGKTTFEDAAKNNSADGTRSRGGDLGYFSKGQMV-PEFEKAAFALKKGEMTAKPVKT 233

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            FGY +   ++ + +    F EVK+DI   +   K  + ++++   L
Sbjct: 234 DFGYHVIKATDSRDASIRPFAEVKEDIKADLVRQKQVKAIQDERDAL 280



 Score = 44.2 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 4/130 (3%)

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
            K  +    KA  L+ +       F D  KN  A    +   +           +     
Sbjct: 159 AKDQKAAQEKAADLIRDIKAGKTTFEDAAKNNSADGTRSRGGDLGYFSKGQMVPEFEKAA 218

Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIA 608
           F+     +   P++    Y V K T+S+        + K+   + L +      +     
Sbjct: 219 FALKKGEMTAKPVKTDFGYHVIKATDSRDASIRPFAEVKEDIKADLVRQKQVKAIQDERD 278

Query: 609 YLKSQYSVTV 618
            L+++Y V +
Sbjct: 279 ALRARYGVKI 288



 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 10/147 (6%)

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
           +  KA+++  +    + +  A  T+ ++ ++               G      +   +P 
Sbjct: 160 KDQKAAQE--KAADLIRDIKAGKTTFEDAAKNNSADGTR----SRGGDLGYFSKGQMVPE 213

Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
            E+  F +   +       T    D  Y  ++  +S  A  R   EV  D+K D    K 
Sbjct: 214 FEKAAFALKKGEMTAKPVKT----DFGYHVIKATDSRDASIRPFAEVKEDIKADLVRQKQ 269

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGK 522
            + +  + + L   Y  +         
Sbjct: 270 VKAIQDERDALRARYGVKIAAPEAPAS 296


>gi|224825282|ref|ZP_03698387.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
 gi|224602203|gb|EEG08381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
          Length = 264

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 5/157 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            E  K+  +++ +++A Y++   +    +     Q++  ++ EA +    LKKGKKF  L
Sbjct: 107 AEIVKQSPVTDAKIKARYDQLASQQAGSKEVHARQIMVASEAEASKVIADLKKGKKFEDL 166

Query: 300 AEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A+   K      S   +G  +   + +  LA+++  L K    +       G+ +  + +
Sbjct: 167 AKTLSKDPAAKQSGGDMGWGNLSQM-EPKLAEALKGLGKGQSSSQPFKSGLGWHVFKIED 225

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           I+ +      EVK  IA Q++    ++ V E   + +
Sbjct: 226 IRDAKLPPLNEVKAQIARQIQQEDVAKAVGELRSKAK 262



 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 54/131 (41%), Gaps = 2/131 (1%)

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
           K+    +      ++A++++ +  K+GK F D+ K L            M   N      
Sbjct: 135 KEVHARQIMVASEAEASKVIADL-KKGKKFEDLAKTLSKDPAAKQSGGDMGWGNLSQMEP 193

Query: 548 GISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
            +++   G         P ++GL + VFK+ + +   +   ++  + + + + ++ +   
Sbjct: 194 KLAEALKGLGKGQSSSQPFKSGLGWHVFKIEDIRDAKLPPLNEVKAQIARQIQQEDVAKA 253

Query: 607 IAYLKSQYSVT 617
           +  L+S+  + 
Sbjct: 254 VGELRSKAKIQ 264


>gi|167586945|ref|ZP_02379333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ubonensis Bu]
          Length = 259

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 4/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK + ++ E++A Y++  +   + E+  +  ++  N+++A +    +K G KF  L
Sbjct: 103 EDFLKKNQPTDAEVKARYDELVKGAANREL-HLHHILVDNEQQAKDLIAKIKAGAKFEDL 161

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    ++         A +   L K       +   FG+ I  V ++
Sbjct: 162 AKQYSKDPGSGKNGGDLDWADPKAYVPEFAAAATKLQKGQMTDEPVKTQFGWHIIRVDDV 221

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           +      F +VK  IA QM   K  
Sbjct: 222 RSVAPPPFDQVKPQIAQQMVQQKLQ 246



 Score = 43.1 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
             +A  L+ +  K G  F D+ K       +      +D  + K +  +  +        
Sbjct: 142 EQQAKDLIAKI-KAGAKFEDLAKQYSKDPGSGKNGGDLDWADPKAYVPEFAAAATKLQKG 200

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   P++    + + +V + +       D+    + Q M +  L +    L+ Q  V 
Sbjct: 201 QMTDEPVKTQFGWHIIRVDDVRSVAPPPFDQVKPQIAQQMVQQKLQAFEESLRQQAKVQ 259



 Score = 38.4 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/163 (10%), Positives = 50/163 (30%), Gaps = 18/163 (11%)

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEK-----VKEDYKRLEEFLA---LGTSMDEI 404
           + +       +  EVK      ++     E      + ++ ++ ++ +A    G   +++
Sbjct: 102 IEDFLKKNQPTDAEVKARYDELVKGAANRELHLHHILVDNEQQAKDLIAKIKAGAKFEDL 161

Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
           +++        P     G D+   +  A     +              D  V    G + 
Sbjct: 162 AKQYS----KDPGSGKNGGDLDWADPKAY--VPEFAAAATKLQKGQMTDEPVKTQFG-WH 214

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSSKAN 504
            +++ +         ++V   + +     K     E +  +A 
Sbjct: 215 IIRVDDVRSVAPPPFDQVKPQIAQQMVQQKLQAFEESLRQQAK 257


>gi|57168166|ref|ZP_00367305.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli RM2228]
 gi|57020540|gb|EAL57209.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli RM2228]
          Length = 273

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 11/162 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGK--- 294
            +    I++ + +++A YE+NKEKY  P     + ++  +++EA +  + LK  KGK   
Sbjct: 104 EKILNSIKVDSSKVKAFYEQNKEKYIKPAAVQAKHILVSSEQEAKDIIKELKGLKGKALD 163

Query: 295 -KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
            KF QLA+E+            LG F +  +      D+ F+L      T  +  +FGY 
Sbjct: 164 DKFSQLAQEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 222

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +    N +    + F +VKK I N ++  +  + + +  + L
Sbjct: 223 VILKENSRAKEQIKFDDVKKGIENGLKFEEFKKVINQKGQDL 264


>gi|134093645|ref|YP_001098720.1| periplasmic peptidyl-prolyl cis-trans isomerase (PPIase), involved
           in maturation of outer membrane proteins [Herminiimonas
           arsenicoxydans]
 gi|133737548|emb|CAL60591.1| Chaperone SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA)
           (PPIase SurA) (Rotamase SurA) [Herminiimonas
           arsenicoxydans]
          Length = 469

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 77/493 (15%), Positives = 156/493 (31%), Gaps = 116/493 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            + +V V  + +    FI   K     +  + G +   E+     L +++L+ ++     
Sbjct: 54  DAILVVVNNEVITRYEFIERLKVIENRLKGQGGQMPPMEQ-----LQRQLLERMIVERAQ 108

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G++ D   +   +AR        N+ +   F  RL ++G+   ++ +     +
Sbjct: 109 LQQAKESGIKVDDAMLDRAVARI----ADQNQLTMPEFRKRLEQDGMVYFQFREEIRSEM 164

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
               +                         R VD               S+A +  +  +
Sbjct: 165 ILQRLRE-----------------------REVD----------NKIQVSDAEVDAYMAE 191

Query: 220 YKD-NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           +   N  AP+   +  IL  V E     ++++                            
Sbjct: 192 HSGTNANAPQELNLGQILIRVPENATPQQLAD---------------------------- 223

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
           ++K A+E    L  G  F +LA         L+   LG  +++ +P +   D+  SL ++
Sbjct: 224 SRKRAEEVLAQLNAGGDFAKLAAAYSDGTDGLTGGELGWRTQDRLPQL-FVDATASL-QQ 281

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFT---------VSFQEVKK--------DIANQMRIT 378
           G   P++    G+ I  V   +              +   VK+         +   +   
Sbjct: 282 GQIAPLVKSGNGFHILKVLGKRTQSVLRAAPGANPAAANTVKQTHASHILIKVNQVVSAA 341

Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
            A  K+ E  +RL+   A   + +E++R               G    G  V        
Sbjct: 342 DARRKLTELKQRLDNKAA---TFEELAR-LHSNDFSASKGGDLGWIYPGDTVPEFERAMD 397

Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-----VKKDWKTV 493
            L               +  P G Y  + +KE      RK ++V  +     V++  +  
Sbjct: 398 AL-------PVGEVSEPIESPFG-YHLILVKE------RKSDDVSQERQRLVVRQALRAQ 443

Query: 494 KTAEEVSSKANQL 506
           K  E       Q+
Sbjct: 444 KVEEATQDWLRQV 456


>gi|302876602|ref|YP_003845235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
 gi|307687276|ref|ZP_07629722.1| peptidylprolyl isomerase [Clostridium cellulovorans 743B]
 gi|302579459|gb|ADL53471.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
          Length = 339

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/396 (14%), Positives = 116/396 (29%), Gaps = 83/396 (20%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           K  +  V  + L  + +     G+++   +      V  VG +K+       + +  +  
Sbjct: 2   KNIKKLVTAVMLGTMIISVSACGIAEKTPAAKAKQVVAKVGEKKITRGEVDTAMQSYIDE 61

Query: 67  ISQKIGFVV--NSERARSVGLDKKI-LDNLVSGATLDQFIEDIGLEADHGRVWGEI-ARS 122
              K G     + E  +S+   ++  L N+V    + Q+IED  LE +   +  E     
Sbjct: 62  AKAKYGEKYETSKEAMKSINAQREAQLKNMVDTELMLQYIEDNNLEINMDEINSETDKEI 121

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
                   +     ++  L   G   + + ++                            
Sbjct: 122 EKMKTDYGQGDEQKYIDVLKNAGFTPESFKEYTKNRKLTDKAKEAI-------------- 167

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY--KRISYILFDVH 240
                                     S+  L   F   ++ ++  +   K + YIL    
Sbjct: 168 --------------------GKDITVSDEELATSF--NEETFKTEKANIKHVQYILIKND 205

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
             E K                                 N++ AD A   +K G  F   A
Sbjct: 206 ANEDKA-------------------------------KNKEIADAALAEIKGGLSFADAA 234

Query: 301 EEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS-FGYVIAHVSN 355
           ++  +  S       LG  + +         +  +L   G  + +I    +G+ I     
Sbjct: 235 KKYSEDSSTSQTGGYLGEVTDQSQLVEGFLKAALAL-NPGQVSEIIDEPTYGFFIIKALP 293

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           I+ +  + F++ K      +   K S K  E  ++L
Sbjct: 294 IEEA--IPFEKEKS--KASLLQEKQSSKYTEVLEQL 325


>gi|257092906|ref|YP_003166547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045430|gb|ACV34618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 336

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 7/158 (4%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQ 298
            +  K    S++ L+AEYE+ K      E +    ++   + EA      LKK    F +
Sbjct: 120 QDLIKNGAASDEVLKAEYERIKATITGSEYK-ARHILVEKEAEATAIIAKLKKDPGAFAK 178

Query: 299 LA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA    ++ G   S   LG F    +     A ++  L K       +   +GY +  + 
Sbjct: 179 LAMEKSKDAGSKASGGELGWFDLSRMV-PEFAAAVSKLEKGAITQEPVKTPYGYHVIQLE 237

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + KP     F+EVK  +A Q++     + + +   + +
Sbjct: 238 DSKPIEAPPFEEVKPHLAQQVQQQNLKKHLDDLKAKAK 275



 Score = 40.4 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 67/220 (30%), Gaps = 35/220 (15%)

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
           ++       +D         D+  + V A  Y + L+      D+ L  ++         
Sbjct: 87  VAEEAVKKGLDKSPEVIEQIDLMRQSVLASAYVQDLIKNGAASDEVLKAEY--------- 137

Query: 464 MWVQIKESIPARDRKLEEVLTDVK-KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
                           E +   +   ++K      E  ++A  ++ +  K+   F  +  
Sbjct: 138 ----------------ERIKATITGSEYKARHILVEKEAEATAIIAKLKKDPGAFAKLA- 180

Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVT 577
                            E  +F    +   F+  V       +   P++    Y V ++ 
Sbjct: 181 ---MEKSKDAGSKASGGELGWFDLSRMVPEFAAAVSKLEKGAITQEPVKTPYGYHVIQLE 237

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +SK       ++   +L Q + +  L   +  LK++  + 
Sbjct: 238 DSKPIEAPPFEEVKPHLAQQVQQQNLKKHLDDLKAKAKIE 277


>gi|254787082|ref|YP_003074511.1| chaperone SurA precursor [Teredinibacter turnerae T7901]
 gi|237683982|gb|ACR11246.1| chaperone SurA precursor [Teredinibacter turnerae T7901]
          Length = 428

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/425 (12%), Positives = 125/425 (29%), Gaps = 68/425 (16%)

Query: 17  FLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
             V +   F +   L            VV V +  +  S   +           + G  +
Sbjct: 4   IFVSVLAVFALALSLPSYSQPQMLDRVVVIVDKSVITQSELDSRIANITQRA-AQAGMRL 62

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
                    L K++LD L+S        +  G+E     + G I            +  +
Sbjct: 63  PGRDV----LQKQVLDQLISETLQLNMAKRYGIEISDADLNGAIQNIKA----SRGWDDE 114

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD- 193
            F   +  E  N  E+ ++  + ++   V    V G +R S   +    +       +  
Sbjct: 115 TFAREIHAEAANMHEFRENLRREITLQQVSQGVVRGRIRISEQEISNFLKSADAQFWISP 174

Query: 194 -------YIVLNNRHVPAIADPSNAVLTQWFEK--YKDNY---RAPEY------------ 229
                   I L         + +       +++     N+      E             
Sbjct: 175 DYRLGHILIPLPPAPSKEQTEAAEKRAEAIYQQLVNGANFGEMAIAESSGPSALKGGDLG 234

Query: 230 -KRISYILFDVHEKEKKIEISNDE----------LQAEYEKNKEKYFSPEIRTVEQLVF- 277
            ++ + +     E    +E+ +            +    +K  E         V  ++  
Sbjct: 235 FRKSADLPTLFAEIAPTLEVGDVSKPARSQAGFHILKLMDKRGETKQVVSQAKVRHILLK 294

Query: 278 --------PNQKEADEAFQSLKKGK-KFIQLAEEQGKSL----SDISLGSFSKEYIPDVS 324
                     + + ++  + + KG+  F +LA++  + +    S   LG    +      
Sbjct: 295 PSAILPSDKARAKLEQMREQIIKGEADFAELAKDNSEDIGSKMSGGDLGWAEPDTFVG-E 353

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
            A +I    K G+ +      FG+ I  V + +          ++ I  + R    S + 
Sbjct: 354 FAQTI-RDTKIGEISEPFQTQFGWHILEVLDRRQEDLT-----EEAIRAKARQVLTSRRF 407

Query: 385 KEDYK 389
           +++ +
Sbjct: 408 EDETQ 412



 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 68/208 (32%), Gaps = 21/208 (10%)

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                +R    + I+           +I IS  E+    +    +++      +  ++ P
Sbjct: 125 ANMHEFRENLRREITLQQVSQGVVRGRIRISEQEISNFLKSADAQFWISPDYRLGHILIP 184

Query: 279 ------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSL 325
                        +K A+  +Q L  G  F ++A  +    S +  G    ++     +L
Sbjct: 185 LPPAPSKEQTEAAEKRAEAIYQQLVNGANFGEMAIAESSGPSALKGGDLGFRKSADLPTL 244

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRITKA 380
              I    + GD +       G+ I  + + +        + K        +  +   KA
Sbjct: 245 FAEIAPTLEVGDVSKPARSQAGFHILKLMDKRGETKQVVSQAKVRHILLKPSAILPSDKA 304

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRRE 408
             K+++  +++   +       E+++  
Sbjct: 305 RAKLEQMREQI---IKGEADFAELAKDN 329


>gi|254437017|ref|ZP_05050511.1| PPIC-type PPIASE domain protein [Octadecabacter antarcticus 307]
 gi|198252463|gb|EDY76777.1| PPIC-type PPIASE domain protein [Octadecabacter antarcticus 307]
          Length = 284

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 59/151 (39%), Gaps = 5/151 (3%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
              + + +LQA Y+                ++   ++EA E    +  G  F + A E+ 
Sbjct: 114 SAPVGDADLQAAYDARFADVAPDTEYNASHILVTTEEEATEIKAMVDDGADFAETAVEKS 173

Query: 305 ---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                 S   LG F    +   +  +++ +L   G+ +  +   FG+ I  ++  + + +
Sbjct: 174 TGPSGPSGGDLGWFGLGMMV-PAFEEAVLTL-DAGEVSAPVETQFGWHIIMLNEARETPS 231

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +  ++++++A  ++       +    +  +
Sbjct: 232 PTLDDLREELAIDIQQQALDALINSLTESAD 262


>gi|313681753|ref|YP_004059491.1| ppic-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154613|gb|ADR33291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 280

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 73/161 (45%), Gaps = 10/161 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGKK-- 295
            ++ + I++   E++A ++ N E++   E      ++   + EA    +S+K   G K  
Sbjct: 111 QQQFEAIKVDAKEVKAYFDANPEEFVDKEKIHARHILVKTEGEAQSIIKSMKGLSGDKLR 170

Query: 296 --FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             FI  A+ +     +     LG F +  +   S  D+ F++ +    +  +   FGY +
Sbjct: 171 NEFIAQAKSKSTGPSAAKGGDLGYFPRGQMV-PSFNDAAFAMKEGAISSTPVQSQFGYHV 229

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            ++ + KP+  + F EVK  I  ++++ K    +++    L
Sbjct: 230 IYIEDKKPAKKLGFDEVKNFIEQRLKMDKFKATMEKKMSDL 270


>gi|254243688|ref|ZP_04937010.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           2192]
 gi|126197066|gb|EAZ61129.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           2192]
          Length = 430

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/408 (10%), Positives = 130/408 (31%), Gaps = 64/408 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S      ++    + ++ G  +  E      L +++L+ L+     
Sbjct: 31  DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G+      +   +        + N  S + F + L R+G++  +  +   + +
Sbjct: 86  QQIGDRSGIRISDEELNQAMGTI----AQRNGMSLEQFQAALTRDGLSYSDAREQVRREM 141

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQA-------KRFYFENRSVDYIV-LNNRHVPAIADPSN 210
             + V        ++ S   +           +   E R  + ++ +       +   + 
Sbjct: 142 VISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASSDVIQAAA 201

Query: 211 AVLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
               + +++ K   ++                     ++ + +          + + +  
Sbjct: 202 RQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSLAVGDVT 261

Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
                     +    EK        +   V  ++            +K A + ++ ++ G
Sbjct: 262 EPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQKLYERIQSG 321

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F +LA+    + G +L+   L     E +        + +   +G+ +      FG+ 
Sbjct: 322 EDFGELAKSFSEDPGSALNGGDLNWIDPEALV-PEFRQ-VMNDTPQGELSKPFRSQFGWH 379

Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           I  V   +    +  F+E  +   + +R  K  E+++   +++ +   
Sbjct: 380 ILQVLGRRATDSSEKFRE--QQAVSVLRNRKYDEELQAWLRQIRDEAY 425



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 105/321 (32%), Gaps = 42/321 (13%)

Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGINEKE-YIDHYTKMLSRTDVVGM 167
               RV   +    +   + ++   +V  + L R   +  +        + L   ++   
Sbjct: 28  VPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVLTQQVLERLIIENIQQQ 87

Query: 168 F--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
                G+R S+  L+QA     +   +                S+A             R
Sbjct: 88  IGDRSGIRISDEELNQAMGTIAQRNGMSLEQFQAALTRDGLSYSDA-------------R 134

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--- 282
               + +           ++I++S  E++     +  K    E   +  ++ P  +    
Sbjct: 135 EQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASS 194

Query: 283 ---------ADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIF 330
                    A E +Q LK+G  F QLA  +     +L    +G      +P       I 
Sbjct: 195 DVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQP-FDSMIG 253

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASE 382
           SLA  GD T  +    G++I  +   +    +   EV          +I ++    K ++
Sbjct: 254 SLA-VGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQ 312

Query: 383 KVKEDYKRLEEFLALGTSMDE 403
           K+ E  +  E+F  L  S  E
Sbjct: 313 KLYERIQSGEDFGELAKSFSE 333


>gi|110677781|ref|YP_680788.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Roseobacter denitrificans OCh 114]
 gi|109453897|gb|ABG30102.1| PPIC-type PPIASE domain protein [Roseobacter denitrificans OCh 114]
          Length = 285

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 59/147 (40%), Gaps = 5/147 (3%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           +  ++ +++QA Y+         E      ++   ++EA    +++  G  F   A E+ 
Sbjct: 114 EQAVTEEDIQAAYDAEFGNLDPEEEFNASHILVATEEEAIAVKEAIDGGANFAATAREKS 173

Query: 305 KSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
              S      LG FS   +   S   +  +L + G+ +  +   FG+ +  +++ +    
Sbjct: 174 TGPSGPNGGELGWFSTGMMV-PSFEAATIAL-EVGEVSDPVETQFGWHVITLNDTRQKNI 231

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDY 388
            + +E ++ I  ++    A   ++   
Sbjct: 232 PTLEEAREGIEARLAQDAALGIIQNAA 258


>gi|21675072|ref|NP_663137.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium tepidum TLS]
 gi|21648311|gb|AAM73479.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium tepidum TLS]
          Length = 438

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 79/499 (15%), Positives = 148/499 (29%), Gaps = 100/499 (20%)

Query: 15  KIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           K+   VL    +   G +DA  S      V  VG + +  S      +QEL +  Q    
Sbjct: 3   KVLFAVLAALMIAMNGFADAAASTGLDRIVAIVGNEIILASDVN---EQELMLHLQY--- 56

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW-GEIARSPLFHGKDNKF 132
               E  +   L K+IL+N+++   +    +   ++ D   V     AR           
Sbjct: 57  ---PETRKDPQLRKRILENMINQKIILTKAKIDTVKVDEKSVDDQAAARYSSLRAGFPSV 113

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           S     +  +R G+       H  + +    ++  F                        
Sbjct: 114 S-----AMESRFGMPVNRLKQHIREDIRDQQMIEAFRRKNFH------------------ 150

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-RAPEYKRISYILFDVHEKEKKIEISND 251
                           S      ++ + K     APE   +S I+           +S  
Sbjct: 151 ------------EVTVSYDETMAFYNQEKGALPEAPETVSVSQIIKMPL-------VSEA 191

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
             QA  +K K                          Q L+ G  F  LA E         
Sbjct: 192 ARQAALDKIK-----------------------AVQQQLEAGGSFATLAREYSDDPGSRE 228

Query: 312 LG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS----- 363
            G    F+++     S  ++  S+ K G  + ++   FGY I  + + +     +     
Sbjct: 229 KGGDLGFTRKGELVPSFEEAA-SVLKPGQISGIVETRFGYHIIQLIDKEGDRIHTRHILA 287

Query: 364 -FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLVDF 420
            F   K DI   + + K+  K         + L+   +  E++++      S     +  
Sbjct: 288 LFDRSKTDIPATIALLKSIRK---------DVLSGKATFAEMAKKYSDDPASATNGGLIT 338

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS--YMWVQIKESIPARDRK 478
           +G      EVA +    + +         +S+   +     +  Y    +    PA    
Sbjct: 339 SGSGNPDLEVATLRPDLRKIIDGLKSKGDISQPEKIESDKSAPFYALFMLNSRTPAHVLT 398

Query: 479 LEEVLTDVKKDWKTVKTAE 497
            E     +++     K+ E
Sbjct: 399 PEHDFAQIQELALNHKSQE 417


>gi|228990140|ref|ZP_04150111.1| Foldase protein prsA 1 [Bacillus pseudomycoides DSM 12442]
 gi|228769579|gb|EEM18171.1| Foldase protein prsA 1 [Bacillus pseudomycoides DSM 12442]
          Length = 281

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 29/192 (15%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + +++YK                  +  + S       +K  +  I++ EL+
Sbjct: 65  TVDDKEVDKKYDEYKKQLGDQFDAALKQQGFTKDSFKESVRAELAMDKAIESSITDKELK 124

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA+    ++G +    
Sbjct: 125 ENYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDKGSAEKGG 175

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +     +D+ + L KK + +  +   FGY I  V++IK     SF+E K +
Sbjct: 176 DLGYFGPGKMVK-EFSDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKE--QKSFEEEKAN 231

Query: 371 IANQMRITKASE 382
           I   +   K  +
Sbjct: 232 IKKGLVEKKKQD 243


>gi|116054322|ref|YP_788767.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889335|ref|YP_002438199.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           LESB58]
 gi|254237192|ref|ZP_04930515.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           C3719]
 gi|296387100|ref|ZP_06876599.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           PAb1]
 gi|115589543|gb|ABJ15558.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169123|gb|EAZ54634.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           C3719]
 gi|218769558|emb|CAW25318.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           LESB58]
          Length = 430

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/408 (10%), Positives = 130/408 (31%), Gaps = 64/408 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S      ++    + ++ G  +  E      L +++L+ L+     
Sbjct: 31  DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G+      +   +        + N  S + F + L R+G++  +  +   + +
Sbjct: 86  QQIGDRSGIRISDEELNQAMGTI----AQRNGMSLEQFQAALTRDGLSYADAREQVRREM 141

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQA-------KRFYFENRSVDYIV-LNNRHVPAIADPSN 210
             + V        ++ S   +           +   E R  + ++ +       +   + 
Sbjct: 142 VISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASSDVIQAAA 201

Query: 211 AVLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
               + +++ K   ++                     ++ + +          + + +  
Sbjct: 202 RQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSLAVGDVT 261

Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
                     +    EK        +   V  ++            +K A + ++ ++ G
Sbjct: 262 EPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQKLYERIQSG 321

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F +LA+    + G +L+   L     E +        + +   +G+ +      FG+ 
Sbjct: 322 EDFGELAKSFSEDPGSALNGGDLNWIDPEALV-PEFRQ-VMNDTPQGELSKPFRSQFGWH 379

Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           I  V   +    +  F+E  +   + +R  K  E+++   +++ +   
Sbjct: 380 ILQVLGRRATDSSEKFRE--QQAVSVLRNRKYDEELQAWLRQIRDEAY 425



 Score = 77.3 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 105/321 (32%), Gaps = 42/321 (13%)

Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGINEKE-YIDHYTKMLSRTDVVGM 167
               RV   +    +   + ++   +V  + L R   +  +        + L   ++   
Sbjct: 28  VPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVLTQQVLERLIIENIQQQ 87

Query: 168 F--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
                G+R S+  L+QA     +   +                ++A             R
Sbjct: 88  IGDRSGIRISDEELNQAMGTIAQRNGMSLEQFQAALTRDGLSYADA-------------R 134

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--- 282
               + +           ++I++S  E++     +  K    E   +  ++ P  +    
Sbjct: 135 EQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASS 194

Query: 283 ---------ADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIF 330
                    A E +Q LK+G  F QLA  +     +L    +G      +P       I 
Sbjct: 195 DVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQP-FDSMIG 253

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASE 382
           SLA  GD T  +    G++I  +   +    +   EV          +I ++    K ++
Sbjct: 254 SLA-VGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQ 312

Query: 383 KVKEDYKRLEEFLALGTSMDE 403
           K+ E  +  E+F  L  S  E
Sbjct: 313 KLYERIQSGEDFGELAKSFSE 333


>gi|312621942|ref|YP_004023555.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202409|gb|ADQ45736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 340

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 96/265 (36%), Gaps = 34/265 (12%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFE---------NRSVDYIVLNNRHVPAIADP-- 208
           SRTD++     G     LL D+      E          R+++        +        
Sbjct: 67  SRTDILDQVFNGKTYRELLKDELFTILTEELLCLQEARKRNINLTKQEEEEIKKYIQELK 126

Query: 209 SNAVLTQWFEKYKDNYRAPEY------KRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
           +N  +  +F +Y     + E        +   I         K  +S+ E+   Y  NK 
Sbjct: 127 TNEEMRGYFNQYLRKINSDENHFYRDLYKTRLINKLYSSITSKTTVSDSEIINYYNTNKN 186

Query: 263 KYFSPEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKSLS-DISLGSF 315
           ++   +I  +   V   +++A      ++    LKKG+ F +L ++  +      + G  
Sbjct: 187 QFKKRKIIDIFLKVENEEEDARKREIANKIVSELKKGESFEKLVKKYSEDDGASTTKGII 246

Query: 316 ------SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
                  KE        + +F LA  G  + VI    GY I  V + K    +   EVK+
Sbjct: 247 DYFRKGEKEAEYGSVFEEEVFKLA-VGQISNVIKTVKGYHIVKVLDEK---YMPLDEVKE 302

Query: 370 DIANQMRITKASEKVKEDYKRLEEF 394
           +I +++   K  E  +   + L++ 
Sbjct: 303 EIQSKLMKQKKDEAFRLYIENLKKL 327


>gi|305431687|ref|ZP_07400856.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli JV20]
 gi|304445282|gb|EFM37926.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli JV20]
          Length = 273

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 11/162 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGK--- 294
            +    I++ + +++A YE+NKEKY  P     + ++  +++EA +  + LK  KGK   
Sbjct: 104 EKILNSIKVDSSKVKAFYEQNKEKYIKPAAVQAKHILVSSEQEAKDIIKELKGLKGKALD 163

Query: 295 -KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
             F QLA+E+            LG F +  +      D+ F+L      T  +  +FGY 
Sbjct: 164 DNFSQLAQEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 222

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +    N +    + F +VKK I N ++  +  + + +  + L
Sbjct: 223 VILKENSRAKEQIKFDDVKKGIENGLKFEEFKKVINQKGQDL 264


>gi|196230321|ref|ZP_03129184.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
           flavus Ellin428]
 gi|196225918|gb|EDY20425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
           flavus Ellin428]
          Length = 319

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/384 (13%), Positives = 118/384 (30%), Gaps = 81/384 (21%)

Query: 20  VLFVPFLIWGLSDALFSVSGSST----VVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           ++ +  +  GL+ + F+             V    V FS        +     + +    
Sbjct: 6   LIPLSLVCIGLAISTFTARAQEVLDGIAAVVNSDVVTFSQVRELVGPKEKQAHETLKGQE 65

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
             E+ +   +  + +++L+  A + Q  +  G       +   I        +       
Sbjct: 66  LVEKIKE--IRTEAINDLIDRALIIQEFKTKGYTIPDYFIDDRIQGI--IKDEFGN-DRQ 120

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
            F+  LA +    +++ D    M+  +++    V G                        
Sbjct: 121 AFLRTLAAQNYTLEKFRDLQKDMIIVSEMRKQAVKGAT---------------------- 158

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
                         +A +T +++++ + Y  PE  ++  I                    
Sbjct: 159 -----------SVPDAKITAYYKEHLEEYSQPEQMKLRMIAI------------------ 189

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISL 312
                  +    + R          K  DE  Q +  G +F  LA    +  S       
Sbjct: 190 -------RGVENDSRR---------KMIDEIRQKIVGGAEFGDLARMYSEDSSQEQYGDW 233

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           G   ++ + + SL  + FSL K G+ + V+     Y + +    KP+     ++V  +I 
Sbjct: 234 GWIDRKKL-NESLTKTAFSL-KPGEMSQVVELGGSYYLLYCEAKKPATVKPLKDVHDEIE 291

Query: 373 NQMRITKASEKVKEDYKRLEEFLA 396
             +  T+  ++  +   +L     
Sbjct: 292 KVLLQTERQQQQADWLAKLRRKAY 315



 Score = 38.4 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           ++    + + +  G    +++R     S      D+   D K          E L    F
Sbjct: 198 RKMIDEIRQKIVGGAEFGDLARMYSEDSSQEQYGDWGWIDRKK-------LNESLTKTAF 250

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
               P      V L  GSY  +  +   PA  + L++V  +++K     +  ++ +    
Sbjct: 251 SL-KPGEMSQVVELG-GSYYLLYCEAKKPATVKPLKDVHDEIEKVLLQTERQQQQADWLA 308

Query: 505 QL 506
           +L
Sbjct: 309 KL 310


>gi|148264478|ref|YP_001231184.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
 gi|146397978|gb|ABQ26611.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
          Length = 299

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 89/274 (32%), Gaps = 39/274 (14%)

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
             +  +   ++L    V              + +   +  +N   D  +   + V A   
Sbjct: 60  PAQRAEIVRQLLLTKAVAARSRKEGFDKKPEVKEELGYVIDNYLADQYL--RKVVTADVA 117

Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
                L +++ +++ ++   +  R+ +I F+  +                        +P
Sbjct: 118 IPEEELKKYYAEHEKDFLISQSARVRHIYFEAAKDA----------------------TP 155

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
           E      +    + +A+   + LK+G  F  +A    +          LG  S       
Sbjct: 156 E------VKEKAKAKAEAILKQLKEGADFAAVARASSEDADSASKGGDLGVLSPGKTNSK 209

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
               + F+L K G+ +PV+   FGY I  V       T SF E K  I   ++     +K
Sbjct: 210 EFEKAAFAL-KAGETSPVVETPFGYHIIRVDERTDQRTASFDEAKDYIRTTLKGQFEQKK 268

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
            +E   +L    A    ++ + +         P 
Sbjct: 269 AREFLDKL----AKEAGLEVVQQAPAATGDSKPQ 298


>gi|308271396|emb|CBX28004.1| hypothetical protein N47_G33280 [uncultured Desulfobacterium sp.]
          Length = 332

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/346 (13%), Positives = 117/346 (33%), Gaps = 70/346 (20%)

Query: 51  VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
           +  S    + +     I +  G+    E A    + + +LD L++    DQ I+  G+  
Sbjct: 48  ITLSDLEVATRAYTEKI-KSAGYGFEEEHAMLFKMREDMLDQLINRKLTDQEIKKYGIST 106

Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
           +   +   I R        +    +   + + ++G+   ++ D   + + R+ V+ +   
Sbjct: 107 NDKEIDNSIERIKEAKYLTD----EELRNMVTKDGMTFDDFRDAIKENILRSKVLDI--- 159

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
                                          V +    +      +++ +K +Y      
Sbjct: 160 ------------------------------EVKSKIVITKEDTKAYYDSHKSDYMPQNKY 189

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            +  I+   + +               +K+                       ++ +  L
Sbjct: 190 HLFNIIIKTNSEADGD-----------DKH-----------------EAMSVMEKIYAKL 221

Query: 291 KKGKKFIQLAEE--QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           K+G+ F +++++  +   + +  LG F  + +    + D+I +L +K +FT ++    GY
Sbjct: 222 KQGQPFEEVSKDSAESSGVENSDLGYFKADEL-SPQIQDAIKNLKQK-EFTKILETDLGY 279

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            I ++ +I+     S  E    I   +      +  K   ++L + 
Sbjct: 280 QIIYIKDIEVKPGKSLDEAAAGIQGILFNDIIDKNFKLWMEQLRKK 325


>gi|71899114|ref|ZP_00681278.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
 gi|71731108|gb|EAO33175.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
          Length = 463

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/430 (12%), Positives = 119/430 (27%), Gaps = 64/430 (14%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S    +            G +   E      L +++L+ L+     
Sbjct: 34  DRIVAVVDDNVVLKSELDRAIHNVKSQYVGHEGQLPPDEV-----LQRQVLERLILIKLQ 88

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +  G+      +   I+       ++NK S D    +L  EGI+  E+       +
Sbjct: 89  VARAQTNGIRVSDDELNQAISSI----AENNKTSVDGLRQKLVAEGISFPEFRQSVRDEI 144

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYF--ENRSVDYIVLNNRHVPAIADPSNAV---- 212
           +   +   F    +  S   +D A           + +I+++          + A     
Sbjct: 145 TVHHLRQGFAQSRIVVSEGEVDTALAQANSGAQYHLQHILVSLPDGATSEQIAIAQKKIN 204

Query: 213 -LTQWFEKYKDNYRA-------------------------PEYKRISYILFDVHEKEKKI 246
            +    +K +  + A                         PE            +    +
Sbjct: 205 GIKSVIDKGELAFSAAAVRYSDSPNALESGDLGWRSLDEIPEAFAQMVQTMKPGQIVGPL 264

Query: 247 E-ISNDELQAEYEKNKEKYFSPEIR-----TVEQLVF---------PNQKEADEAFQSLK 291
              S  +L    E +     +   +         ++            + + D     + 
Sbjct: 265 RGTSGFQLLKLVEVHDSTAAAGPRQMATEYHARHILVRITEKQKEAQAKAKIDTLRARIA 324

Query: 292 KGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G  F  +A E  +  +       LG F  +        + + +LA  G+ +     + G
Sbjct: 325 GGADFQTVARESSEDANNSNQGGDLGWFPSDAF-GADFGNHVKALA-DGNVSEPFRSAAG 382

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
           + I      + +   + +  +  I + +   K  E  +   + L     +   +DE +  
Sbjct: 383 WHIVQRLGTRQTDV-TRENQRAQIRDTIGQRKLEESYERFLRELRSEAYVSLQIDEPADD 441

Query: 408 EKIVSIDLPL 417
               S  +  
Sbjct: 442 HHTPSAAVTP 451


>gi|228996233|ref|ZP_04155879.1| Foldase protein prsA 1 [Bacillus mycoides Rock3-17]
 gi|229003892|ref|ZP_04161699.1| Foldase protein prsA 1 [Bacillus mycoides Rock1-4]
 gi|228757344|gb|EEM06582.1| Foldase protein prsA 1 [Bacillus mycoides Rock1-4]
 gi|228763501|gb|EEM12402.1| Foldase protein prsA 1 [Bacillus mycoides Rock3-17]
          Length = 281

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 29/192 (15%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              +  + + +++YK                  +  + S       +K  +  I++ EL+
Sbjct: 65  KVDDKEVDKKYDEYKKQLGDQFDAALKQQGFTKDSFKESVRAELAMDKAIESSITDKELK 124

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDI 310
             Y+        PEI+    ++  ++  A +  + L +GK F +LA+    ++G +    
Sbjct: 125 ENYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDKGSAEKGG 175

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +     +D+ + L KK + +  +   FGY I  V++IK     SF+E K +
Sbjct: 176 DLGYFGPGKMVK-EFSDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKE--QKSFEEEKAN 231

Query: 371 IANQMRITKASE 382
           I   +   K  +
Sbjct: 232 IKKGLVEKKKQD 243


>gi|331017629|gb|EGH97685.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 440

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/423 (12%), Positives = 137/423 (32%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V      +  L  ++LD L+     
Sbjct: 31  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPP----AADLQPQVLDRLILENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++ ++  +   + +
Sbjct: 86  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYEDAREQVRREM 141

Query: 160 SRTDVVGM-FVGGMRPSNLLL------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V        ++ S   +      DQ K    E   +  I++      +      A 
Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + I +  
Sbjct: 202 VKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPIGDVT 261

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVF---------PNQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            +  A + ++ ++
Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATRLLAQKIYERIE 321

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA+    + G +L+   L       +      D + S   +G+ +     ++G
Sbjct: 322 NGEDFATLAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRD-VMSSTPQGELSKPFKTAYG 379

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + +   A + +R  K  E+++   +++ +   +   +   ++
Sbjct: 380 WHVLEVLGRRATDATG--QARDQQALSVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437

Query: 407 REK 409
             +
Sbjct: 438 AAQ 440


>gi|160872391|ref|ZP_02062523.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Rickettsiella grylli]
 gi|159121190|gb|EDP46528.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Rickettsiella grylli]
          Length = 431

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/371 (11%), Positives = 98/371 (26%), Gaps = 78/371 (21%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V    +      N  + +      +     N     +    K++L+ ++      Q  
Sbjct: 34  AVVNHHAITAQQLDNQMEVKRQQWLSE-----NKSIPNTTTFRKQVLNEMIDQELQLQLA 88

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
             IGL+ +   +   I        + N  + +    +L +  +    Y +     L    
Sbjct: 89  ATIGLKINDDTLDKTILSI----AQHNGLTLEQLREKLQQANMPFARYREQIRHQLLINR 144

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +                                     V A    ++  +          
Sbjct: 145 LQQ---------------------------------NEVAAKITVTDQEIKD-------- 163

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
                      +        KK     ++L   +  N               +   ++ A
Sbjct: 164 ----------MLTHLPKIISKKAVYHVEDLLIPFSNNPS----------STDIARTKETA 203

Query: 284 DEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               Q  K+G  F  L E    S   LS   LG      +PD+    S+ +L K G+   
Sbjct: 204 LSLLQKAKQGTSFSALIEHANASTIPLSGGDLGWRPLNDLPDI-FQTSVQTL-KPGEVAG 261

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT---KASEKVKEDYKRLEEFLAL 397
            I    G+ +  +  ++         +     + +  T     +++ +   + +   +  
Sbjct: 262 PIRADNGFHLIRLLELRGIAPAPHDVISTHARHILIKTSPLLNNQQAENRLREIRADILH 321

Query: 398 GTSMDEISRRE 408
           G     ++++ 
Sbjct: 322 GGDFASLAKKY 332


>gi|218961587|ref|YP_001741362.1| putative Parvulin-like peptidyl-prolyl isomerase [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730244|emb|CAO81156.1| putative Parvulin-like peptidyl-prolyl isomerase [Candidatus
           Cloacamonas acidaminovorans]
          Length = 281

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 64/164 (39%), Gaps = 10/164 (6%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKKGKKF 296
             + I I+N +++  Y++ KE +  PE      ++        + +A++  + +     F
Sbjct: 109 FPQNIPITNAKIKEFYDEQKEFFLKPEQVRCSHILIRNDNEEAKAKAEQIRREIHNADDF 168

Query: 297 IQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
               ++     S+     LG F +  +    + +  FSL   G+ +      +GY I   
Sbjct: 169 TYFCQKYSDCPSNNVCGDLGWFPRGKMI-PEIEEVAFSLT-VGEISQPFLSPYGYHILMK 226

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
           +       + F+++K  +  +++  +   K+      L +  A 
Sbjct: 227 TGQSEKEYIPFEDIKDSLYARLQQIEREYKLLRHLAELRKQYAS 270


>gi|254456501|ref|ZP_05069930.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083503|gb|EDZ60929.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 475

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 77/208 (37%), Gaps = 11/208 (5%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           S +  + +  + ++ V    F+N +  E  +  Q I   +++       + +++L  L+S
Sbjct: 38  STNNQNNIAKINKKNVTTQDFMN-YLNESRISQQAIRENIDN------NIIEELLSGLIS 90

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              +   IE++ L      V  +I  +  F  ++N F    +   L    ++   Y    
Sbjct: 91  TTLISLEIEELDLSITELTVLKKIKENKNFFDENNVFQRTKYEKFLLTNNMSAPMYELQL 150

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLT 214
                +  +      G      LL   K+F  EN+S+        +      D +N+ + 
Sbjct: 151 KNKELQKHLFDFIGAGTITPEFLL--VKKFEEENKSLSLEYFPMENLYKNKEDLTNSEIE 208

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEK 242
            + ++ KD  +  E+    Y+  +    
Sbjct: 209 NFLKENKDLLKR-EFIDFKYVTLNPQIL 235


>gi|15595791|ref|NP_249285.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           PAO1]
 gi|9946466|gb|AAG03983.1|AE004495_7 peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           PAO1]
          Length = 430

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/408 (10%), Positives = 130/408 (31%), Gaps = 64/408 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S      ++    + ++ G  +  E      L +++L+ L+     
Sbjct: 31  DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G+      +   +        + N  S + F + L R+G++  +  +   + +
Sbjct: 86  QQIGDRSGIRISDEELNQAMGTI----AQRNGMSLEQFQTALTRDGLSYADAREQVRREM 141

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQA-------KRFYFENRSVDYIV-LNNRHVPAIADPSN 210
             + V        ++ S   +           +   E R  + ++ +       +   + 
Sbjct: 142 VISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASSDVIQAAA 201

Query: 211 AVLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
               + +++ K   ++                     ++ + +          + + +  
Sbjct: 202 RQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSLAVGDVT 261

Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
                     +    EK        +   V  ++            +K A + ++ ++ G
Sbjct: 262 EPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQKLYERIQSG 321

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F +LA+    + G +L+   L     E +        + +   +G+ +      FG+ 
Sbjct: 322 EDFGELAKSFSEDPGSALNGGDLNWIDPEALV-PEFRQ-VMNDTPQGELSKPFRSQFGWH 379

Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           I  V   +    +  F+E  +   + +R  K  E+++   +++ +   
Sbjct: 380 ILQVLGRRATDSSEKFRE--QQAVSVLRNRKYDEELQAWLRQIRDEAY 425



 Score = 77.3 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 105/321 (32%), Gaps = 42/321 (13%)

Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGINEKE-YIDHYTKMLSRTDVVGM 167
               RV   +    +   + ++   +V  + L R   +  +        + L   ++   
Sbjct: 28  VPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVLTQQVLERLIIENIQQQ 87

Query: 168 F--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
                G+R S+  L+QA     +   +                ++A             R
Sbjct: 88  IGDRSGIRISDEELNQAMGTIAQRNGMSLEQFQTALTRDGLSYADA-------------R 134

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--- 282
               + +           ++I++S  E++     +  K    E   +  ++ P  +    
Sbjct: 135 EQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASS 194

Query: 283 ---------ADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIF 330
                    A E +Q LK+G  F QLA  +     +L    +G      +P       I 
Sbjct: 195 DVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQP-FDSMIG 253

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASE 382
           SLA  GD T  +    G++I  +   +    +   EV          +I ++    K ++
Sbjct: 254 SLA-VGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQ 312

Query: 383 KVKEDYKRLEEFLALGTSMDE 403
           K+ E  +  E+F  L  S  E
Sbjct: 313 KLYERIQSGEDFGELAKSFSE 333


>gi|134094945|ref|YP_001100020.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Herminiimonas arsenicoxydans]
 gi|133738848|emb|CAL61895.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Herminiimonas arsenicoxydans]
          Length = 258

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 65/145 (44%), Gaps = 5/145 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK  + + +++AEY++ + +    E      ++   +++A      LK G KF +L
Sbjct: 103 ADFLKKNPVKDADIKAEYDRFRAQASDKEY-HARHILVEKEEDAKAIIAKLKGGAKFEEL 161

Query: 300 AE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A+   + G + +   L   +         +D++ SL K   +   +   FGY +  + ++
Sbjct: 162 AKQSKDPGSADNGGDLDWAAPAAFVKP-FSDAMVSLQKGQLYDTPVKTQFGYHVIKLDDV 220

Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381
           + +   + +EVK  IA  ++  K  
Sbjct: 221 RAAKIPTLEEVKPQIAEGLQQKKLQ 245



 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 11/123 (8%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           +ED K +   L  G   +E++++ K           A         A   + +     + 
Sbjct: 142 EEDAKAIIAKLKGGAKFEELAKQSKDPG-------SADNGGDLDWAAPAAFVKPFSDAMV 194

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT---AEEVSS 501
                   D  V    G Y  +++ +   A+   LEEV   + +  +  K     +++ +
Sbjct: 195 SLQKGQLYDTPVKTQFG-YHVIKLDDVRAAKIPTLEEVKPQIAEGLQQKKLQAFQQQLRA 253

Query: 502 KAN 504
           KA 
Sbjct: 254 KAK 256



 Score = 40.4 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 39/118 (33%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
             +  + ++   K G  F ++ K         N  +        F       + S     
Sbjct: 141 KEEDAKAIIAKLKGGAKFEELAKQSKDPGSADNGGDLDWAAPAAFVKPFSDAMVSLQKGQ 200

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           +   P++    Y V K+ + +   +   ++    + + + +  L +    L+++  + 
Sbjct: 201 LYDTPVKTQFGYHVIKLDDVRAAKIPTLEEVKPQIAEGLQQKKLQAFQQQLRAKAKIQ 258


>gi|254469068|ref|ZP_05082474.1| foldase protein PrsA, putative [beta proteobacterium KB13]
 gi|207087878|gb|EDZ65161.1| foldase protein PrsA, putative [beta proteobacterium KB13]
          Length = 257

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 78/168 (46%), Gaps = 8/168 (4%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           Y  ++Y  + + +  K+  ISN+++   Y+   +++   E +  + ++   + EA+    
Sbjct: 91  YMEMAYTEY-LKKYIKEHPISNEDIDLAYKNFTKQFNEQEYKG-QHILVKTKNEAESLIG 148

Query: 289 SLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            ++ G +F +LA+    ++  +     L  F  E + + S A+ I +L +  + +     
Sbjct: 149 KIENGNEFSELAKNFSIDKASAEKGGDLDWFRLEDMVE-SFANEIKNL-QINELSGAFQT 206

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            FG+ +  +++ KP       E+KK + + ++  K    +KE  +  E
Sbjct: 207 QFGWHVFKLTDKKPLTPPELSEIKKRLEDDLKKRKLKNHIKELKQNAE 254


>gi|171058521|ref|YP_001790870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
 gi|170775966|gb|ACB34105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
          Length = 275

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 4/143 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
           +E +KK  +++ E++AEY+K K      E    + ++   + EA      LK G KF +L
Sbjct: 113 NEYQKKNPVTDAEIKAEYDKVKSGAGEKEY-HAKHILVEKEDEAKALIAELKGGAKFDEL 171

Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G       P       + ++  L K       +   FGY I  + ++
Sbjct: 172 AKKASKDPGSAQNGGDLDWAAPANYVPEFSQAMVKLEKGKYTETAVKSQFGYHIILLDDV 231

Query: 357 KPSFTVSFQEVKKDIANQMRITK 379
           + +     +EVK  +  ++   K
Sbjct: 232 REAQFPPLEEVKAQLEQRLAQQK 254



 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 10/123 (8%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           +++ K L   L  G   DE++++    S D       G          +P   Q + ++ 
Sbjct: 152 EDEAKALIAELKGGAKFDELAKK---ASKDPGSAQNGGDLDWAAPANYVPEFSQAMVKL- 207

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT---AEEVSS 501
              +      T       Y  + + +   A+   LEEV   +++     K     EE+ S
Sbjct: 208 ---EKGKYTETAVKSQFGYHIILLDDVREAQFPPLEEVKAQLEQRLAQQKMGKYREELRS 264

Query: 502 KAN 504
           KA 
Sbjct: 265 KAK 267


>gi|237721455|ref|ZP_04551936.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4]
 gi|293370821|ref|ZP_06617366.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|229449251|gb|EEO55042.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4]
 gi|292634037|gb|EFF52581.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 713

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 92/722 (12%), Positives = 210/722 (29%), Gaps = 125/722 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     +  V  V    +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117
           +   ++    G    ++  ++  +  ++  + V+   +++  + +GL      +      
Sbjct: 61  EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119

Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150
                + ++P F       F  D+    L     ++E +                     
Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQK 178

Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179
                     Y    +K L    V                + G+  S+++          
Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238

Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224
                    +  + Y E R + YI +       +   +    D +   L    E Y   +
Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTS-F 297

Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267
                    Y+    ++     ++     +  +   Y              K   K  + 
Sbjct: 298 IRSTGSEAPYVDLFYNKTAFPSDVVARLDSASVGTIYGPYYNGADNTINSFKIVAKAAAA 357

Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319
           +     Q+    +        AD  + ++K G  F  LA++ G     + ++   +    
Sbjct: 358 DSVEFRQIQVYAEDALKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417

Query: 320 I--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
           I   ++    +I +          +  +   VI  V+N K         V   I  ++  
Sbjct: 418 IDGDNLKFISAINNAGVNELVNLPMGQAN--VILQVTNKKSVKDKYKVAV---IKREVEF 472

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
           +K  E     Y    +F+A   S++++    +     L  +D          +  +   +
Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528

Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           + L   F K  P          +    M V +    P   R L+ V   ++ +    K A
Sbjct: 529 EALRWAFDKAKPGDVSGLYECGESDHMMVVGLVGIKPEGYRPLKAVQDQLRAEIVKDKKA 588

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
           E++ +           + K   +   +    ++T      +           +    S  
Sbjct: 589 EKIMADMKAANATSFNQYKEMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASAA 645

Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
                  PI+      V +V    K+    +     + LT M  +     ++  L  + +
Sbjct: 646 EVNQLSAPIKGNAGVFVLQVYGKDKLNETFDAKAEEATLTNMHAR-FASRLMNDLYLKAN 704

Query: 616 VT 617
           V 
Sbjct: 705 VK 706


>gi|237715673|ref|ZP_04546154.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
 gi|262408682|ref|ZP_06085228.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294807295|ref|ZP_06766109.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229444382|gb|EEO50173.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
 gi|262353547|gb|EEZ02641.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294445593|gb|EFG14246.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 713

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 92/722 (12%), Positives = 210/722 (29%), Gaps = 125/722 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     +  V  V    +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117
           +   ++    G    ++  ++  +  ++  + V+   +++  + +GL      +      
Sbjct: 61  EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119

Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150
                + ++P F       F  D+    L     ++E +                     
Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQK 178

Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179
                     Y    +K L    V                + G+  S+++          
Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238

Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224
                    +  + Y E R + YI +       +   +    D +   L    E Y   +
Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTS-F 297

Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267
                    Y+    ++     ++     +  +   Y              K   K  + 
Sbjct: 298 IRSTGSEAPYVDLFYNKTAFPSDVVARLDSASVGTIYGPYYNGADNTINSFKIVAKAAAA 357

Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319
           +     Q+    +        AD  + ++K G  F  LA++ G     + ++   +    
Sbjct: 358 DSVEFRQIQVYAEDAVKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417

Query: 320 I--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
           I   ++    +I +          +  +   VI  V+N K         V   I  ++  
Sbjct: 418 IDGDNLKFISAINNAGVNELVNLPMGQAN--VILQVTNKKSVKDKYKVAV---IKREVEF 472

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
           +K  E     Y    +F+A   S++++    +     L  +D          +  +   +
Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528

Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           + L   F K  P          +    M V +    P   R L+ V   ++ +    K A
Sbjct: 529 EALRWAFDKAKPGDVSGLYECGESDHMMVVGLVGIKPEGYRPLKAVQDQLRAEIVKDKKA 588

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
           E++ +           + K   +   +    ++T      +           +    S  
Sbjct: 589 EKIMADMKAANATSFNQYKEMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASAA 645

Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
                  PI+      V +V    K+    +     + LT M  +     ++  L  + +
Sbjct: 646 EVNQLSAPIKGNAGVFVLQVYGKDKLNETFDAKAEEATLTNMHAR-FASRLMNDLYLKAN 704

Query: 616 VT 617
           V 
Sbjct: 705 VK 706


>gi|95930006|ref|ZP_01312746.1| PPIC-type PPIASE domain protein [Desulfuromonas acetoxidans DSM
           684]
 gi|95133975|gb|EAT15634.1| PPIC-type PPIASE domain protein [Desulfuromonas acetoxidans DSM
           684]
          Length = 303

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/381 (14%), Positives = 113/381 (29%), Gaps = 95/381 (24%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW--KQELGMISQKIG 72
           KI    L    +I     ++++   S     V  + +           + E      +  
Sbjct: 4   KIVFTALLFSLII----PSVWAEQLSKIAAVVNDEIITTRQLEQRLVSRGERSATDAQ-- 57

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                         ++ LDN+++   ++Q   +IGLE     +   I          N  
Sbjct: 58  -------------KRQELDNMINERLMEQRSREIGLEVSDDDIETAINDVQQ----QNNI 100

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           S +     L  +G++   Y +     + R  ++G                          
Sbjct: 101 SREQLEQALIAQGLSMSGYREQLRGQILRYKLMG-------------------------- 134

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                    V +  D +   +  +++++ D YR     R+S + F + +           
Sbjct: 135 -------YEVKSKVDITRQEVRNYYQEHLDQYRQSPRVRLSRLTFPLGDDP--------- 178

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDI 310
                                      ++ A  A + L  G+   ++         +   
Sbjct: 179 ------------------------TAARENATIALRKLDDGESVDEVLVNMSPRTRIEGG 214

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            +GSF    + + +   +I  L   GD TP+I       I  V    P        V++ 
Sbjct: 215 EMGSFVAGELSE-TFEQAIADL-DSGDHTPLIPLGDALHILKVEERIPGSVADISTVEEQ 272

Query: 371 IANQMRITKASEKVKEDYKRL 391
           I  ++   K  +K++E  + L
Sbjct: 273 IRGELSQQKMDQKLQEWRENL 293


>gi|330961060|gb|EGH61320.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 440

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 110/377 (29%), Gaps = 85/377 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L K++LD L+     
Sbjct: 31  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQKQVLDRLILENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S D F + LA +G++  +  +   + +
Sbjct: 86  LQMGERAGIRVSDEELNQAIGTI----AQRNNMSVDQFRAALAHDGLSYDDAREQVRREM 141

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             + V                       + R           V      S   +  +   
Sbjct: 142 IISRV----------------------RQRR-----------VAERIQVSEQEVKNFLAS 168

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            +   +  E   ++ IL    +                                + +   
Sbjct: 169 DQGKAQLSEEFHLANILIATPDSAS----------------------------SEAIQAA 200

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             +A   +  LKKG  F +LA        +L    +G      +P     D + S+   G
Sbjct: 201 AIKAKSIYDQLKKGADFGKLATTNSSSENALEGGDMGWRKAAQLP-PPFGDMLSSMP-IG 258

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVS--FQEVK--------KDIANQMRITKASEKVKE 386
           D TP      G++I  +   +     +    EV          +I ++      ++K+ +
Sbjct: 259 DVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYD 318

Query: 387 DYKRLEEFLALGTSMDE 403
             +  E+F  L  S  E
Sbjct: 319 RIENGEDFATLAKSFSE 335


>gi|323697784|ref|ZP_08109696.1| SurA domain [Desulfovibrio sp. ND132]
 gi|323457716|gb|EGB13581.1| SurA domain [Desulfovibrio desulfuricans ND132]
          Length = 323

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 108/356 (30%), Gaps = 81/356 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +V +    V         K     I  +   +   E+ +  GL ++ LD LV+   +
Sbjct: 28  DRILVKINDSIVTQYDLDQEMKPVYDQIKDR--KLTAREQTQLEGLRRQALDKLVNDVLI 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q I+   +E     +  EI R       + K + + F   +A++G++ +E+     K+L
Sbjct: 86  QQEIKRFSVEVSDENIDKEIERV----RTERKLTLEEFQQMVAQDGLSMEEFRSRLKKLL 141

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            + +++G  V                                       +++ + Q +E 
Sbjct: 142 EKQELIGHMVNS---------------------------------KVVVTDSEIQQEYEA 168

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            KD+Y   +   +                                          ++ P+
Sbjct: 169 RKDDYSMGKMVEL----------------------------------------AIILLPS 188

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGD 337
           +    E  + +  G+  F +   +        S GS  +    D++    +       G 
Sbjct: 189 EVSPVEVRERITSGEMTFAEAVAKYSVGPGKESGGSIGELSWEDLADDWQNALKGVSVGG 248

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            +  +       +     I     V  ++V+ DI   +   K      + + +L++
Sbjct: 249 VSTPLTIQNHQALLSPVKINEDRIVPLEDVRDDIYKDLMQKKRETVFTDYFNKLKQ 304


>gi|90021693|ref|YP_527520.1| tRNA pseudouridine synthase [Saccharophagus degradans 2-40]
 gi|89951293|gb|ABD81308.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus
           degradans 2-40]
          Length = 264

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 19/164 (11%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAFQSLKK 292
           K  ++ + ++  Y  N+++Y   +   V  ++F                +A EA   L++
Sbjct: 103 KKNVTPEAIKNYYNNNQDEY-QNKKIHVAHILFRTNGRMSDEEKNARLLKAKEAHARLQQ 161

Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            +KF  LA+E             LG   +  I D   + ++F++   G  +     S+GY
Sbjct: 162 NEKFEDLAKEYSDDKLSAQKGGDLGWLDEGSI-DPVFSRTVFAM-DAGAVSEPFVTSYGY 219

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            I  V     + T  F  VK DIA +++      ++    ++ +
Sbjct: 220 HIVKVIEAAKTTTKPFDAVKGDIAYKLKEQAKQAEMNRLKEQAK 263


>gi|150005095|ref|YP_001299839.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
           8482]
 gi|294778904|ref|ZP_06744320.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|149933519|gb|ABR40217.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
           8482]
 gi|294447213|gb|EFG15797.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 710

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 95/721 (13%), Positives = 204/721 (28%), Gaps = 126/721 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  + + +    F+       L    G   V  V  + +    +     
Sbjct: 4   LQTIR--SKGPLLVVVIGLALFAFIAGDAWKVLQPHQGKQDVGEVNGKTLTAQEYQKMVD 61

Query: 62  QELGMISQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI- 119
           +   +I    G   +N ++     +  ++  + V+   +      +GL      V   I 
Sbjct: 62  EYTEVIKLTQGVSALNDDQLTQ--VKDQVWQSYVNNQLIAAEAAKLGLTVSKAEVQAIIE 119

Query: 120 -------ARSPLFHGKDNKFSHDVFVSR------LAREGINEKEYIDHYT---------- 156
                   ++P  + +   F  D+          L    +   +Y+++Y           
Sbjct: 120 EGTNPLLMQTPFRNPQTGAFDKDMLKKFLVDYAHLDASKM-PAQYVEYYQKMGAFWNFIE 178

Query: 157 ----KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-------- 204
               +         +    +  + +  + A     E   V    +    +          
Sbjct: 179 KTLIQSTLAEKYQNLIAKSLISNPVAAEDAFTSRTEQSDVLLAAIPYSSISDSTITVSNS 238

Query: 205 ---------------------------IADPSNA-------VLTQWFE-----KYKDNYR 225
                                      +  PS          +T++          + + 
Sbjct: 239 EIKDLYNKKKSSFEQPVETRNIKYIDVLVTPSEEDRKEVLNEVTEYANQLGTAADMNTFI 298

Query: 226 APE-------YKRISYILFDVHEKEKKIEISNDELQA-EYEKNKEKY---------FSPE 268
                        I+  ++      +   ++ +E+    Y +  + Y          +P+
Sbjct: 299 RSTGSVVPFSEIAINKTVYPNDVVARLDSVTINEVYGPYYNQADDSYNAFKIIAKQTAPD 358

Query: 269 IRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIP 321
                Q+    +  A      D  F +LK G  F  +A++ G++     L + + +    
Sbjct: 359 SIQYRQIQVYAEDAAKTATLADSIFNALKDGADFADIAKKYGQTGEATWLTARNYEGAAL 418

Query: 322 DVSLADSIFSL--AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           D   A  I +L  +   + + +  G    VI  V + K         V   I   +  +K
Sbjct: 419 DADNAKYINTLINSNVKELSNLQIGQAN-VILQVLDKKAMKDKYKVAV---IKRPVEFSK 474

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
             E   + Y    +F+A  T+MD+I    +     L  ++ A        V  +    + 
Sbjct: 475 --ETYNKAYNDFSQFVAQNTTMDKIVANAEESGYRL--LERADFRSAEHRVGGVKGTREA 530

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           L  +F   +           +   M V +++  PA  R +  V   +K +    K     
Sbjct: 531 LKWIFAAKEGEVSPLYECGENDHLMVVALEKINPAGYRNINLVADMLKAEIIKDK----- 585

Query: 500 SSKANQLVLEYSKEGKNFRDI---GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
             KA +L+ E  K   +   +      +  S+                    +    S  
Sbjct: 586 --KAEKLIAE-MKGANSIDQVKNMANAVSDSVKHITFSAPAYVSVTRASEPALGAYASKA 642

Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
                  PI+      + +V N +    +   K        M      S I  L  +  V
Sbjct: 643 EVNKLTGPIKGNAGVYMIQVYNKEKSAEEFDAKNEENNLSNMAGRYASSFINDLYKKAEV 702

Query: 617 T 617
            
Sbjct: 703 K 703


>gi|126653292|ref|ZP_01725403.1| hypothetical protein BB14905_08958 [Bacillus sp. B14905]
 gi|126589966|gb|EAZ84095.1| hypothetical protein BB14905_08958 [Bacillus sp. B14905]
          Length = 323

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/375 (12%), Positives = 111/375 (29%), Gaps = 116/375 (30%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
           + +A + L  + + F+ W + +    +     V ++    +    ++ + ++  G     
Sbjct: 32  SVIAVLLLGNI-LWFIAWAIPNKSQEIGSDEQVAAIDGDVITRQEWMIAMEERYG----- 85

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
                           K+ L NLV+ + +++  +   ++     +  E+A         +
Sbjct: 86  ----------------KETLQNLVNESVMEKAAKTYKIKVTDQEIDLELALM---RSAQD 126

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
           KF         A + ++ ++        L    V+                         
Sbjct: 127 KFDT-------AMQNLSAEQLRQKIRSQLILDKVL------------------------- 154

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
                             S   + +++E+ +  Y      R ++                
Sbjct: 155 ------------TKDVVISEESIEKYYEENQGLYNTKTSYRTNF---------------- 186

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
                                   +    +K ADEA   LK G  F  LA E     +  
Sbjct: 187 ------------------------IEVDAKKAADEALGELKNGSDFSVLAREISLDSASA 222

Query: 311 SLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIKPSFTVSF 364
           SLG         +   D ++ +++ S  K  + +       G Y I  V  +    + ++
Sbjct: 223 SLGGDVGFLTENQENVDPAIINAVKS-TKANEVSKAFKLDNGHYGIVQVQEVLEGQSFTY 281

Query: 365 QEVKKDIANQMRITK 379
            +VK+ I  ++ + +
Sbjct: 282 DDVKEHIERELALEQ 296


>gi|164688876|ref|ZP_02212904.1| hypothetical protein CLOBAR_02524 [Clostridium bartlettii DSM
           16795]
 gi|164602080|gb|EDQ95545.1| hypothetical protein CLOBAR_02524 [Clostridium bartlettii DSM
           16795]
          Length = 351

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 92/236 (38%), Gaps = 48/236 (20%)

Query: 196 VLNNRHVPAIADPSNAVLTQWFEK-YKD---NYRAPEYKR--------ISYILFD----- 238
           V+  +      +P++  + +  +   K    N    E  +        ++YI        
Sbjct: 111 VIYQKAKEVKVEPTDKEIQEQVDDFNKSINSNETTKEQAKKAGITDKFLTYIFTRELANS 170

Query: 239 --VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--------------- 281
                  K  ++ +  L+ EYE NK+ Y +    T   ++   +                
Sbjct: 171 AYQEYFNKHTKVDDATLKKEYESNKQAYNT---VTASHILISTKDSDGKELSAKKKAEAK 227

Query: 282 -EADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKG 336
            +A+E  Q  K G+ F +LA++  +  S       LG+F+   + +   + + F L  KG
Sbjct: 228 KKAEEVLQKAKNGEDFAKLAKKYSEDTSNAENGGELGAFTYPQMVE-EFSKAAFKL-NKG 285

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           D + ++  S+GY I  V++       +F  VK  +   +   K SE+V++ +   +
Sbjct: 286 DISDIVETSYGYHIIKVTD----KADTFDAVKNSVKTAVLSNKYSEQVQKLFDDAK 337


>gi|298481511|ref|ZP_06999703.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D22]
 gi|298272375|gb|EFI13944.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D22]
          Length = 713

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 94/722 (13%), Positives = 210/722 (29%), Gaps = 125/722 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     +  V  V    +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117
           +   ++    G    ++  ++  +  ++  + V+   +++  + +GL      +      
Sbjct: 61  EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119

Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150
                + ++P F       F  D+    L     ++E +                     
Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQK 178

Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179
                     Y    +K L    V                + G+  S+++          
Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238

Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224
                    +  + Y E R + YI +       +   +    D +   L    E Y   +
Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTS-F 297

Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267
                    Y+    ++     ++     +  +   Y              K   K  + 
Sbjct: 298 IRSTGSEAPYVDLFYNKTAFPSDVVARLDSASVGTIYGPYYNGADNTINSFKIVAKAAAA 357

Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319
           +     Q+    +        AD  + ++K G  F  LA++ G     + ++   +    
Sbjct: 358 DSVEFRQIQVYAEDAVKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
           I   +L     S         +++   G   VI  V+N K         V   I  ++  
Sbjct: 418 IDGDNL--KFISAINNTGVNELVNLPMGQANVILQVTNKKSVKDKYKVAV---IKREVEF 472

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
           +K  E     Y    +F+A   S++++    +     L  +D          +  +   +
Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528

Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           + L   F K  P          +    M V +    P   R L+ V   ++ +    K A
Sbjct: 529 EALRWAFDKAKPGDVSGLYECGESDHMMVVGLVGIKPEGYRPLKAVQDQLRAEIVKDKKA 588

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
           E++ +           + K   +   +    ++T      +           +    S  
Sbjct: 589 EKIMADMKAANATSFNQYKEMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASAA 645

Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
                  PI+      V +V    K+    +     + LT M  +     ++  L  + +
Sbjct: 646 EVNQLSAPIKGNAGVFVLQVYGKDKLNETFDAKAEEATLTNMHAR-FASRLMNDLYLKAN 704

Query: 616 VT 617
           V 
Sbjct: 705 VK 706


>gi|222112631|ref|YP_002554895.1| sura domain-containing protein [Acidovorax ebreus TPSY]
 gi|221732075|gb|ACM34895.1| SurA domain protein [Acidovorax ebreus TPSY]
          Length = 471

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/401 (14%), Positives = 128/401 (31%), Gaps = 64/401 (15%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +  +      ++ +  I+ + G V   E      L K++L+ L+      Q 
Sbjct: 70  VAVVNSEPITNNEVRQRTERVVQQIASQGGKVPPQEL-----LAKEVLERLILEKIQVQQ 124

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            ++ G++ D   V            + N  S D    RLA +GI+++ + +     L   
Sbjct: 125 AKETGIKVDDYAVSQAEQSV----ARQNSISVDEMHRRLAADGISKERFREELRNQLLAL 180

Query: 163 DVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLN-------------NRHVPAIADP 208
            +        +R S+L +DQ  R   +      + LN                V   +  
Sbjct: 181 RLRERDVESRVRVSDLEVDQYLREQRQAAGPGKLELNLGHILVKVPENAGPDEVAQRSAR 240

Query: 209 SNAVLTQW-----FEKYKDNYR-APEYKRISYILFDVHEKEKKIEISNDE---------- 252
           +   L +      F      Y  APE      +     ++  ++ ++  +          
Sbjct: 241 AQEALAKVQAGGDFGAVAREYSDAPEGANGGLLGLRPADRYPELFVNATQQASVGSVVGP 300

Query: 253 ---------LQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQSL-----KKG 293
                    L+   +       +        ++        +++A E  + L     + G
Sbjct: 301 VRSPAGFHILKVVDKTQSGVPTTAVQSHARHILLRTNANLSERQAAERLEDLRDRVARGG 360

Query: 294 KKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F  LA E    G +     LG  S          +++ +L + G+ +  +   FG  +
Sbjct: 361 ADFAALAREYSQDGSAKDGGDLGWASPGRYV-PEFEEALNAL-RPGEISRPVVSRFGVHL 418

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   + +     ++ +  + + +R  K  E      +  
Sbjct: 419 IQLLERREAKLTQREQ-RDMVRDTVREKKLDEAFATWIQEA 458



 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/371 (13%), Positives = 112/371 (30%), Gaps = 46/371 (12%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             +L +  V      G++  +  + QA++      S+    ++ R               
Sbjct: 114 RLILEKIQVQQAKETGIKVDDYAVSQAEQSVARQNSISVDEMHRRLAADGIS-------- 165

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY-EKNKEKYFSPEIRTVEQ 274
                K+ +R     ++  +     + E ++ +S+ E+     E+ +          +  
Sbjct: 166 -----KERFREELRNQLLALRLRERDVESRVRVSDLEVDQYLREQRQAAGPGKLELNLGH 220

Query: 275 LVFPNQ------------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIP 321
           ++                  A EA   ++ G  F  +A E   +    + G    +    
Sbjct: 221 ILVKVPENAGPDEVAQRSARAQEALAKVQAGGDFGAVAREYSDAPEGANGGLLGLRPADR 280

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA- 380
              L  +    A  G     +    G+ I  V +   S   +   V+    + +  T A 
Sbjct: 281 YPELFVNATQQASVGSVVGPVRSPAGFHILKVVDKTQSGVPT-TAVQSHARHILLRTNAN 339

Query: 381 --SEKVKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
               +  E  + L + +A  G     ++R               G          +P  E
Sbjct: 340 LSERQAAERLEDLRDRVARGGADFAALAREYSQDG----SAKDGGDLGWASPGRYVPEFE 395

Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKT 495
           + L  +        +   ++ P  S   V + + +  R+ KL   E    V+   +  K 
Sbjct: 396 EALNAL--------RPGEISRPVVSRFGVHLIQLLERREAKLTQREQRDMVRDTVREKKL 447

Query: 496 AEEVSSKANQL 506
            E  ++   + 
Sbjct: 448 DEAFATWIQEA 458


>gi|222529840|ref|YP_002573722.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456687|gb|ACM60949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 340

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 112/370 (30%), Gaps = 94/370 (25%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQ------KIGFVVNSERARSVGLDKKILDNLV 94
             V+ V  ++V    +   +        Q       +  V N +  R + L  ++   L 
Sbjct: 36  RVVLEVNGEQVTKREYKIRFNALKENAIQFSSRTDILDQVFNGKTYREL-LKDELFTILT 94

Query: 95  SGATLDQFIEDIGLEAD---HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
                 Q      +         +   I          N+     F   L +        
Sbjct: 95  EELLCLQEARKRNINLTKQEEEEIKKYIQELKA-----NEEMRGYFNQYLRKI----DSD 145

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
            +H+ + L +T ++      +                               +    S++
Sbjct: 146 ENHFYRDLYKTRLINKLYSSIT------------------------------SKTTVSDS 175

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
            +  ++   K+ ++    ++I  I         K+E   ++ +                 
Sbjct: 176 EIVNYYNTNKNQFK---KRKIIDIFL-------KVENEEEDARK---------------- 209

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-DISLGSF------SKEYIPDVS 324
                   ++ A++    LKKG+ F +L ++  +  S   + G         KE      
Sbjct: 210 --------REIANKIVSELKKGENFEKLVKKYSEDDSASTTKGIIDYFRKGEKEAEYGSV 261

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             + +F LA  G  + VI    GY I  V + K    +   EVK++I +++   K  E  
Sbjct: 262 FEEEVFKLA-VGQISNVIKTVKGYHIVKVLDEK---YMPLDEVKEEIQSKLMKQKKDEAF 317

Query: 385 KEDYKRLEEF 394
           +   + L++ 
Sbjct: 318 RLYIENLKKL 327


>gi|288925729|ref|ZP_06419660.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae D17]
 gi|288337384|gb|EFC75739.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae D17]
          Length = 716

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 84/701 (11%), Positives = 198/701 (28%), Gaps = 136/701 (19%)

Query: 17  FLVVLFVPFLIWG-LSDALFSVSGSS------TVVSVGRQKVPFSSFINSWKQELGMISQ 69
            +++  + F ++  +++ LF    SS       V  V  +K+    F     +   +I  
Sbjct: 12  LILICIIGFGLFAFIAEELFRSCESSRNDQRQQVGEVLGEKISVQDFQKLLDEYQEVIKM 71

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG--------EIAR 121
           + G    SE  +   +   + +  V    +++  +++GL      +           + +
Sbjct: 72  QQGTETLSEE-QLNQVKDMVWNTYVQSKLVEKEAKELGLTVTDTELQDVLKAGTNPMLLQ 130

Query: 122 SPLFHGKDNKFSHDVFVSRLAR-----EGINEKEYIDH-------------YTKMLSRTD 163
           +P  + +  +F        LA        +N +    +               + L    
Sbjct: 131 TPFVNQQTGRFDAASLQKFLADFKANKAAVNPQMQEQYQKIYNYWTFIEKTLRQQLLAQK 190

Query: 164 VVGMFVGGMRPSNLLLDQA----------------------------------------K 183
             G+       + +    A                                         
Sbjct: 191 YQGLLAHCFLSNPVEAKMAFEDENQESQINLAAFPYSDIADNKVTVEESDLKAKYDQLKA 250

Query: 184 RFYF--ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
           RFY   E+R + Y+ +     PA           +  +        E  R S  L +   
Sbjct: 251 RFYQPMESRDIKYVDIEVSASPADRAALQKEFAGYRTQLAAAADPAEVVRKSGSLVEYIG 310

Query: 242 KEKKIEISNDELQAEYEKNK----------------------EKYFSPEIRTVEQLVF-- 277
                +    ++ A+++                          K   P+      +    
Sbjct: 311 VPVPRQFFPQDVAAQFDSMAVGVTSAVKESTLDNSLTIVRLLGKVSLPDSVQFRSIQIGG 370

Query: 278 ----PNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEYI-PDVSLADSIF 330
                    AD  + +L+ G  F  LA++ G   + +  +        +  +     S+ 
Sbjct: 371 ETAAKASATADSVYTALQGGADFEALAKKYGQTGAKTWATAQQLVGSLMQSNTPDQKSMV 430

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSN----IKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +  + G+          Y +  ++     ++ +   +F E       +     + +  + 
Sbjct: 431 NAVRNGEV-------NKYHLVKLTQGSIIVQVTARKAFSENYTAAVIKKTNDFSKDTYRT 483

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
            Y +   F++  ++  +I +  +     L  ++          VA I    + L  +F  
Sbjct: 484 VYNKFASFVSANSTGADIEKNAEKAGYRLQTLND--MTTSTHNVANIHSTREALKWIFEA 541

Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPA--RDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
            +           +   + V + +   A  RD    +V   +K +    K AE++ +K  
Sbjct: 542 KEGEVSPMYECGDNNHLLIVVLDKIHNAGYRDMNDAQVKEMLKAEVIRDKKAEQLMAKV- 600

Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE----NKFFGYDGISQVFSGPVEMV 560
                   +G       K  GA +   NQ+                     V +      
Sbjct: 601 --------KGVTGISAAKAKGAKVSMVNQVTFAAPVFVPLTGSSEPALSGAVAATKKGQF 652

Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMNK 600
               ++      +F+VT   + P + +     + L Q   +
Sbjct: 653 STHAVKGAAGVYLFQVTGRTMRPGKFDDKAQEAKLAQRAMQ 693


>gi|210613468|ref|ZP_03289727.1| hypothetical protein CLONEX_01934 [Clostridium nexile DSM 1787]
 gi|210151168|gb|EEA82176.1| hypothetical protein CLONEX_01934 [Clostridium nexile DSM 1787]
          Length = 245

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 74/169 (43%), Gaps = 6/169 (3%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           +R       + E  K + +S +E++A YE NK+ +   +  + + ++  ++++ +   +S
Sbjct: 76  RRDILAQMAMRETLKDVVVSEEEIEAYYEANKQHFTKGDTVSAKHILTDSEEKCNSILES 135

Query: 290 LKKGKK-FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           +  G+K F   A+E     S      LG F +  +      D+ F+ A+ G     +   
Sbjct: 136 ITTGEKEFETAAKEFSTCPSGAKGGDLGEFGRGQMVK-EFEDAAFA-AEIGHVVGPVKTQ 193

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           FGY +  V     +   S +EVK+ I   +   K +E      + +++ 
Sbjct: 194 FGYHLIKVEKKNEAIVASLEEVKETIRRTLLQQKQNEAYNTKVEEMKKK 242


>gi|311029004|ref|ZP_07707094.1| hypothetical protein Bm3-1_00328 [Bacillus sp. m3-13]
 gi|311032299|ref|ZP_07710389.1| hypothetical protein Bm3-1_17466 [Bacillus sp. m3-13]
          Length = 309

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 84/235 (35%), Gaps = 17/235 (7%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
           + ++V      +     +L++ +  Y +    + V+  V+           S   + + +
Sbjct: 50  QANIVATVGDTVITRKDMLEELEGMYGQEMLTKMVNNEVVKQIAKKYKVTVSEQSVDREW 109

Query: 218 EKYKDNY--------RAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
           +  K  Y         + E  +  I   L       K + I   EL++ Y++NK+ Y   
Sbjct: 110 KMIKTMYSRSPLHTNTSEELVKEQIRSSLLLEELLVKDVNIPEAELESYYQENKQLYTIE 169

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDV 323
           +   +  ++   + EAD   + L+ G  F  LA E             LG  + E     
Sbjct: 170 DAFHLSHIIVETKDEADAVVKELEDGSNFTSLAMEVSTDELTANQGGDLGFLTHESQVYP 229

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
           +   +  +  K+  ++  I     Y I ++       T SF EVK  I   + + 
Sbjct: 230 TAYMAEAANLKEKTWSDPISVDEKYAIIYLYEKMDGVTYSFDEVKDQIRRHLAME 284


>gi|110598304|ref|ZP_01386579.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340112|gb|EAT58612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 438

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 65/453 (14%), Positives = 136/453 (30%), Gaps = 100/453 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  VGR+ +  S   +            +  + + E A+  GL ++ILD L+    +
Sbjct: 29  DRIVAVVGREVILKSEIDS---------RALMARLQSPELAKDTGLSRRILDGLIEQQII 79

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +   ++ D   +         F     +F+         R G       D     +
Sbjct: 80  LSKAKIDSVKVDENAISATAGD--RFKQLRARFASK--EEMETRFGKTLPAIRDEIRTEI 135

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
              +++                        RS            A    ++  +  ++  
Sbjct: 136 RNQELIQTLRR------------------KRS------------AGVKVTSGEVMDYYNA 165

Query: 220 YKDNYRA-PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            ++ +   PE  ++S I+             + +LQA                       
Sbjct: 166 NREKFSLIPEGVKVSQIMKYPAVSA------DAQLQAL---------------------- 197

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAK 334
              +     + L+ G  F  LA +  +          LG   K  +   S   + FSL K
Sbjct: 198 --TKIQAVRKELQGGADFALLARKYSQDPGSARLGGDLGYVQKGALI-PSFETAAFSL-K 253

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFT------VSFQEVKKDIANQMRITKASEKVKEDY 388
           +G+ + +I   +GY I  + N +P+        V+F   K D +         +++    
Sbjct: 254 EGEVSGIIETRYGYHIIQLLNKEPNAIHVRHILVAFDHSKDDFS-------GVDQLLNSI 306

Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE---QLLFRVFG 445
           +   + L+  +S  E++ +         L           E  ++P      + +     
Sbjct: 307 RA--DILSGKSSFSEMASKYSDDPSTAKLGGVISSIGGVGEYISLPSLRPELRAIITALK 364

Query: 446 KDDPLSKDHTVALPDGS--YMWVQIKESIPARD 476
               +S    +  P G   Y  +++ E + A  
Sbjct: 365 NPGDISPPSKIDPPQGESFYTIIKLNERVAAHT 397


>gi|327438069|dbj|BAK14434.1| parvulin-like peptidyl-prolyl isomerase [Solibacillus silvestris
           StLB046]
          Length = 324

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/363 (12%), Positives = 96/363 (26%), Gaps = 116/363 (31%)

Query: 25  FLIWGLSDALFSV---SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
           F++W L     +     G   + +V    +    ++   +   G                
Sbjct: 45  FVLWLLPSDETTSEKEDGGEKIAAVEGDPITRQQWLAEMENRYG---------------- 88

Query: 82  SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
                K+ L +LV+ A +++  E   L+     +  EIA        ++   H       
Sbjct: 89  -----KETLQSLVNEAVMEKAAEKYKLDVKEEEIDLEIALLRSAQDSNDSTLHS------ 137

Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
               ++ ++        L    V+                                    
Sbjct: 138 ----LSPEQLRQKMRAQLILDKVL------------------------------------ 157

Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
                        +++E  K  Y  P                                  
Sbjct: 158 -TNDIVVKENEAKKYYEDNKSIYNIPTT-------------------------------- 184

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----S 316
                        ++  ++++A+   + LK G  F  LA E     +  SLG       S
Sbjct: 185 --------HRTSIIIVNSKEDAERVEKELKDGSDFAVLAREHSLDTASASLGGDIGFISS 236

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
            +   D ++   +  L +K    P +     Y I  V+      + SF EV+  +  Q+ 
Sbjct: 237 SQSAVDPAILPEVEKLKEKETSKPFVLSDGRYAIVKVTENMEGQSFSFDEVEGHVKRQLA 296

Query: 377 ITK 379
           + +
Sbjct: 297 LEQ 299


>gi|56476305|ref|YP_157894.1| rotamase [Aromatoleum aromaticum EbN1]
 gi|56312348|emb|CAI06993.1| probable rotamase [Aromatoleum aromaticum EbN1]
          Length = 256

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 61/155 (39%), Gaps = 14/155 (9%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLA 300
           +   +  Y  + E++  PE    + ++  ++  + E           Q+ K  + F +LA
Sbjct: 72  DKAAREFYVAHPEQFVQPEQVHAQHVLIKSEGRSKEEALVLAKQVVAQANKDSQDFGKLA 131

Query: 301 ----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
               E+     +   LG F++  +      D+IF L   G+    +   FG+ +  +   
Sbjct: 132 AEFTEDPSGKANGGDLGFFARGSMVKP-FEDAIFGLKSPGEIVGPVESQFGFHVIRLVER 190

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           K   T+ F EVK  +     +      + ++Y R+
Sbjct: 191 KAETTIPFDEVKDKLVRDETLKYRRMAIGKEYGRI 225


>gi|312890294|ref|ZP_07749831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mucilaginibacter
           paludis DSM 18603]
 gi|311297064|gb|EFQ74196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mucilaginibacter
           paludis DSM 18603]
          Length = 704

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 87/645 (13%), Positives = 193/645 (29%), Gaps = 95/645 (14%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDA--LFSVSGSSTVVSVGRQKVPFSSFINS 59
           +  +R+     +    + +    F+   +      +    ++ V  V  +K+    F   
Sbjct: 4   MGFLRERF-GKIVAAIIGLALFAFIATEVVQYGKSYFNGSANDVGEVDGEKIKKDDFDKK 62

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
             Q      Q+ G    + +  S  + +      VS   L + I+ +GL          I
Sbjct: 63  VDQNTANFKQQSGQGAINPQITSY-IQETTWSQTVSQLILQKEIDKLGLVVGVDETKDMI 121

Query: 120 A----RSPLFHG----KDNKFSHDVFVSRLAREGI---------NEKEYIDHYTKMLSRT 162
           +       +       +  +F        L R  +             ++    +     
Sbjct: 122 SGPTPNQLILQNFGNQQTGQFDRSALNEFLGRLRVAKADDPIKATWANFVTQMIEGKKIE 181

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYK 221
             + +   G+  ++L          +  +  Y+ L+   +P      ++     +++++K
Sbjct: 182 KYITLVKNGLYVNSLDAKDDYEAKNKLVNFKYVALDYASIPDNKITLTDDDYKSYYDEHK 241

Query: 222 DNYR-APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
             ++   E + ++Y+ FD    +       +++                    +L+   +
Sbjct: 242 KQFKNQQELRSLAYVAFDASPSKDDSAAVKEQI-------------------TKLIPEFK 282

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
              D++         F+ +  E    L     G    +        DS+   A KG    
Sbjct: 283 AATDDSL--------FVAVNAESKTPLIYQKKGQLDPQI-------DSLMLNASKGFTYG 327

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALG- 398
               +  Y +A + + + S       VK   I   ++   + EK       L++ +  G 
Sbjct: 328 PYFSNGYYKVAKLVDSRFSP----DSVKARHILISIQAEGSPEKAVAKADSLKKLIQSGK 383

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            +  E++    + SID       G        + IP  E  +F           D  +  
Sbjct: 384 KTFAELAP---LNSIDKGSAVKGGDLGTFARGSMIPVFEDAVFN------GKKGDIKIVT 434

Query: 459 PDGSYMWVQIKESIPAR--------DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
                  ++I +   +         D+ LE           + KT     SKA   +   
Sbjct: 435 SQYGVHLIEILDQKGSSKVVKVAVVDKPLE----------PSSKTKSAAYSKAQAFLGSL 484

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENG 568
           +K   NF +  K  G +  T   +N + +         D +   F            E G
Sbjct: 485 NKN--NFDEEVKKAGLTKKTAEDLNGLASSAPGLDNIRDLVRWAFKADKGDFTDQVYEPG 542

Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL-DSVIAYLKS 612
             YV+ ++T  K   V   +     +   +        +   L++
Sbjct: 543 NEYVIAQLTEIKPKGVLSLEAVKKQIQPAVLNIAKAKQLAPKLQA 587



 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 82/242 (33%), Gaps = 23/242 (9%)

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDI-SLGSFSKEYIPDVSLAD---SIFSLAKKGD 337
           +A     SL K   F +  ++ G +      L   +       ++ D     F   K   
Sbjct: 476 KAQAFLGSLNKN-NFDEEVKKAGLTKKTAEDLNGLASSAPGLDNIRDLVRWAFKADKGDF 534

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
              V      YVIA ++ IKP   +S + VKK I   +       K K+   +L+     
Sbjct: 535 TDQVYEPGNEYVIAQLTEIKPKGVLSLEAVKKQIQPAVLN---IAKAKQLAPKLQAATNG 591

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
            +++D+++++       +  + FA        V     + +L+  +FG     +K   V 
Sbjct: 592 SSTIDQVAQKSNTQVTPVQNIVFA-----NPIVPGAGQENKLIGAIFGS--QPNKVSKVI 644

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
             D       +   +                  +  +  + +  +A   +LE  K   N 
Sbjct: 645 EGDRGVYVYVVDSFLNPAPLN--------NALRQKEQIGQILLQRAEGGILEALKNKANV 696

Query: 518 RD 519
           +D
Sbjct: 697 KD 698


>gi|319943017|ref|ZP_08017300.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
           51599]
 gi|319743559|gb|EFV95963.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
           51599]
          Length = 491

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/402 (12%), Positives = 113/402 (28%), Gaps = 59/402 (14%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V +  +  S          G  +Q  G  V         L K++L+ ++     
Sbjct: 85  DRIVAVVNQGVITESELQAQIHLIEGRAAQTPGAGVPPPD----ELRKQVLEQMILQLAQ 140

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM- 158
           +Q+  D GL+     V   +A       ++N  S      RL  EG++   +        
Sbjct: 141 EQYAADYGLKPSDAEVDRAVADV----AQNNGLSTQQLTERLKDEGVSLDTFRRQLVAEI 196

Query: 159 ----LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
               L   +            +  L ++ +       +  I+L         + +     
Sbjct: 197 VSARLRERETASNVSISEGEIDAELAKSGKVSQPEYDIRQILLKLPEGADQKEVARQKAR 256

Query: 215 ---------------QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE------- 252
                             ++  +   A     + +   D         +   +       
Sbjct: 257 ADELVAKARKGADFGALAQENSEAGDAATGGSMGWRKADDLPGLFADTVRKLKPGEISAP 316

Query: 253 --------LQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSL--------KKGK 294
                   +    ++      + E+     ++ P  + + A EA + L            
Sbjct: 317 VRSPAGFHILKLQDRRDGGATTVELTHARHILLPANSPETAAEAERRLSLFRRDIEAGKA 376

Query: 295 KFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F +LA+E    G +     LG              ++ SL   G+ +  +   FG  + 
Sbjct: 377 DFAKLAKEFSSDGSAAKGGDLGWLYPGDTV-PEFEQAMKSLH-DGEISEPVQTQFGVHLV 434

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            V   +       + ++     ++R  K  E  ++  + L +
Sbjct: 435 QVLGRRTDTESP-ERLRNAARAKLREAKGGEAYQQWLRELRD 475



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 61/396 (15%), Positives = 117/396 (29%), Gaps = 48/396 (12%)

Query: 148 EKEYIDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
             E      + +        +    G++PS+  +D+A     +N  +    L  R     
Sbjct: 123 PDELRKQVLEQMILQLAQEQYAADYGLKPSDAEVDRAVADVAQNNGLSTQQLTERLKDEG 182

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE--------- 256
                           D +R      I        E    + IS  E+ AE         
Sbjct: 183 VSL-------------DTFRRQLVAEIVSARLRERETASNVSISEGEIDAELAKSGKVSQ 229

Query: 257 --YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDIS 311
             Y+  +     PE    ++ V   +  ADE     +KG  F  LA+E    G + +  S
Sbjct: 230 PEYDIRQILLKLPEGAD-QKEVARQKARADELVAKARKGADFGALAQENSEAGDAATGGS 288

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           +G    + +P +  AD++  L K G+ +  +    G+ I  + + +     + +      
Sbjct: 289 MGWRKADDLPGL-FADTVRKL-KPGEISAPVRSPAGFHILKLQDRRDGGATTVELTHA-- 344

Query: 372 ANQMRITKASEKVKEDYKRLE----EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
            + +    + E   E  +RL     +  A      ++++            D        
Sbjct: 345 RHILLPANSPETAAEAERRLSLFRRDIEAGKADFAKLAKEFSSDGSAAKGGDLGWLYPGD 404

Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
                +P  EQ +  +            V    G    VQ+       +   E +    +
Sbjct: 405 T----VPEFEQAMKSL----HDGEISEPVQTQFG-VHLVQVLGRRTDTESP-ERLRNAAR 454

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
              +  K  E       +L      E +   D    
Sbjct: 455 AKLREAKGGEAYQQWLRELRDRTYVEYRQKSDAAST 490


>gi|295086974|emb|CBK68497.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
          Length = 713

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 92/722 (12%), Positives = 210/722 (29%), Gaps = 125/722 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     +  V  V    +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117
           +   ++    G    ++  ++  +  ++  + V+   +++  + +GL      +      
Sbjct: 61  EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119

Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150
                + ++P F       F  D+    L     ++E +                     
Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQK 178

Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179
                     Y    +K L    V                + G+  S+++          
Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238

Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224
                    +  + Y E R + YI +       +   +    D +   L    E Y   +
Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTS-F 297

Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267
                    Y+    ++     ++     +  +   Y              K   K  + 
Sbjct: 298 IRSTGSEAPYVDLFYNKTAFPSDVVARLDSASIGTIYGPYYNGADNTINSFKIVAKAAAA 357

Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319
           +     Q+    +        AD  + ++K G  F  LA++ G     + ++   +    
Sbjct: 358 DSVEFRQIQVYAEDAVKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417

Query: 320 I--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
           I   ++    +I +          +  +   VI  V+N K         V   I  ++  
Sbjct: 418 IDGDNLKFISAINNAGVNELVNLPMGQAN--VILQVTNKKSVKDKYKVAV---IKREVEF 472

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
           +K  E     Y    +F+A   S++++    +     L  +D          +  +   +
Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528

Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           + L   F K  P          +    M V +    P   R L+ V   ++ +    K A
Sbjct: 529 EALRWAFDKAKPGDVSGLYECGESDHMMVVGLVGIKPEGYRPLKAVQDQLRAEIVKDKKA 588

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
           E++ +           + K   +   +    ++T      +           +    S  
Sbjct: 589 EKIMADMKAANATSFNQYKEMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASAA 645

Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
                  PI+      V +V    K+    +     + LT M  +     ++  L  + +
Sbjct: 646 EVNQLSAPIKGNAGVFVLQVYGRDKLNETFDAKAEEATLTNMHAR-FASRLMNDLYLKAN 704

Query: 616 VT 617
           V 
Sbjct: 705 VK 706


>gi|121596392|ref|YP_988288.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
 gi|120608472|gb|ABM44212.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
          Length = 471

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/401 (14%), Positives = 129/401 (32%), Gaps = 64/401 (15%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +  +      ++ +  I+ + G V   E      L K++L+ L+      Q 
Sbjct: 70  VAVVNSEPITNNEVRQRTERVVQQIASQGGQVPPQEL-----LAKEVLERLILEKIQVQQ 124

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            ++ G++ D   V            + N  S D    RLA +GI+++ + +     L   
Sbjct: 125 AKETGIKVDDYAVNQAEQSV----ARQNSISVDEMHRRLAADGISKERFREELRNQLLAL 180

Query: 163 DVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLN-------------NRHVPAIADP 208
            +        +R S+L +DQ  R   +      + LN                V   +  
Sbjct: 181 RLRERDVESRVRVSDLEVDQYLREQRQAAGPGKLELNLGHILVKVPENAGPDEVAQRSAR 240

Query: 209 SNAVLTQW-----FEKYKDNYR-APEYKRISYILFDVHEKEKKIEISNDE---------- 252
           +   L +      F      Y  APE      +     ++  ++ ++  +          
Sbjct: 241 AQEALAKVQAGGDFGAVAREYSDAPEGANGGLLGLRPADRYPELFVNATQQASVGSVVGP 300

Query: 253 ---------LQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQSL-----KKG 293
                    L+   +       +        ++        +++A E  + L     + G
Sbjct: 301 VRSPSGFHILKVVDKTQSGVPTTAVQSHARHILLRTNANLSERQAAERLEDLRDRVARGG 360

Query: 294 KKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F  LA E    G +     LG  S          +++ +L + G+ +  +   FG  +
Sbjct: 361 ADFAALAREYSQDGSAKDGGDLGWASPGRYV-PEFEEALNAL-RPGEISRPVVSRFGVHL 418

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   + +     ++ ++ + + +R  K  E      +  
Sbjct: 419 IQLLERREAKLTQREQ-REMVRDTVREKKLDEAFATWIQEA 458



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/371 (13%), Positives = 113/371 (30%), Gaps = 46/371 (12%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             +L +  V      G++  +  ++QA++      S+    ++ R               
Sbjct: 114 RLILEKIQVQQAKETGIKVDDYAVNQAEQSVARQNSISVDEMHRRLAADGIS-------- 165

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY-EKNKEKYFSPEIRTVEQ 274
                K+ +R     ++  +     + E ++ +S+ E+     E+ +          +  
Sbjct: 166 -----KERFREELRNQLLALRLRERDVESRVRVSDLEVDQYLREQRQAAGPGKLELNLGH 220

Query: 275 LVFPNQ------------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIP 321
           ++                  A EA   ++ G  F  +A E   +    + G    +    
Sbjct: 221 ILVKVPENAGPDEVAQRSARAQEALAKVQAGGDFGAVAREYSDAPEGANGGLLGLRPADR 280

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA- 380
              L  +    A  G     +    G+ I  V +   S   +   V+    + +  T A 
Sbjct: 281 YPELFVNATQQASVGSVVGPVRSPSGFHILKVVDKTQSGVPT-TAVQSHARHILLRTNAN 339

Query: 381 --SEKVKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
               +  E  + L + +A  G     ++R               G          +P  E
Sbjct: 340 LSERQAAERLEDLRDRVARGGADFAALAREYSQDG----SAKDGGDLGWASPGRYVPEFE 395

Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKT 495
           + L  +        +   ++ P  S   V + + +  R+ KL   E    V+   +  K 
Sbjct: 396 EALNAL--------RPGEISRPVVSRFGVHLIQLLERREAKLTQREQREMVRDTVREKKL 447

Query: 496 AEEVSSKANQL 506
            E  ++   + 
Sbjct: 448 DEAFATWIQEA 458


>gi|225010080|ref|ZP_03700552.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium MS024-3C]
 gi|225005559|gb|EEG43509.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium MS024-3C]
          Length = 706

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 92/605 (15%), Positives = 206/605 (34%), Gaps = 77/605 (12%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           LE IR+  RT V  + + +    F+I G+  +    S  G S + SV  +++    F   
Sbjct: 4   LEKIRQ--RTTVLILIIGLALFAFVISGVFTNSGSGSPMGGSAIGSVNGEEISIDDF--- 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +Q+L + +Q+ G      +A +V L  ++ ++ +  + L+Q IED+G+  +  ++   I
Sbjct: 59  -RQKLEVAAQRAGS-----QATTVQLVNQVWNSSLRTSLLNQEIEDLGISVEGDQIMNFI 112

Query: 120 ARS------PLFHGKDNKFSHDVFVSRL----AREGINEK---EYIDHYTKMLSRTDVVG 166
             +      P F  ++  FS  +F++ +    A          +      +         
Sbjct: 113 KNTPSYSNQPEFQDENGIFSESLFIAAVADWKANNPYRYSLWLQDELAIMQSAKEQMYFN 172

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYR 225
           +   G+  +        +   +   + Y+ +    VP      +   +  +  K    ++
Sbjct: 173 LVKAGVGTTLEEGKFDYKLANDKVDISYVRMPFSAVPDTTITVTAGEIESYISKNPALFK 232

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
               + I  +                     +E+   K     ++     +  + +E +E
Sbjct: 233 QEPARDIRLV--------------------YFEEKASKEDEQAVKDAVVGLLSDTEEYNE 272

Query: 286 AFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPV 341
              + +K   F+    + G  L   SDI+  +  +     VS   DSI SL   G     
Sbjct: 273 NTGTTEKVAGFLN-TTDLGAFLERNSDITYDTIFRAKNEIVSTFKDSIISL-NPGQTFGP 330

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEV------KKDIANQMRITKASEKVKEDYKRLEEFL 395
              +  Y ++ +   K + TV    +       + ++  +  TK     +E  K     L
Sbjct: 331 YKENNAYKVSKLVAKKNNGTVKASHILISFVGAERVSPTVTRTK-----EEARKEANRLL 385

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
                   +       + D P     G     +E    P     +F        L +   
Sbjct: 386 IEAKKSTTVFAELARDNSDGPTASRGGDLGFFQEGQMTPKFNDFVFSNSVDAIGLVETEF 445

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
                  +  V++ +        + ++ T  +    + +T   + ++A +  +E ++  K
Sbjct: 446 ------GFHIVRVDDKQD-----IFQIATLSRDVAPSEQTINTIFTQATKFEMEVTENPK 494

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVV 573
            +  I K     + + N++  MD            +   F+   ++           YV+
Sbjct: 495 EYVGIAKEGNFDVRSVNKLLAMDENLPGLAEQRGVVQWAFNEDTDLGAIKRFNVNNGYVI 554

Query: 574 FKVTN 578
            ++T 
Sbjct: 555 VQLTA 559



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 110/352 (31%), Gaps = 30/352 (8%)

Query: 278 PNQKEADEAFQSLKKGKK-FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLA 333
             +KEA+      KK    F +LA +      +     LG F +  +      D +FS +
Sbjct: 376 EARKEANRLLIEAKKSTTVFAELARDNSDGPTASRGGDLGFFQEGQMT-PKFNDFVFSNS 434

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR-ITKASEKVKEDYKRLE 392
              D   ++   FG+ I  V + +  F +        ++  +    +    +     + E
Sbjct: 435 V--DAIGLVETEFGFHIVRVDDKQDIFQI------ATLSRDVAPSEQTINTIFTQATKFE 486

Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
             +    +  E     K  + D+  V+        + +  +  +  ++   F +D  L  
Sbjct: 487 MEVTE--NPKEYVGIAKEGNFDVRSVNK--LLAMDENLPGLAEQRGVVQWAFNEDTDLGA 542

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
                + +G Y+ VQ+     +    + +         +  K       KA  ++   +K
Sbjct: 543 IKRFNVNNG-YVIVQLTARYRSGTMTVADASATALPILRKEK-------KAVWIL--KNK 592

Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLS 570
            G          G S+ T + ++         G +   + + F+          +     
Sbjct: 593 GGNTLESFAAASGQSVETASALSVKSPIIPGAGREAYVVGKAFNLTEGATSSLLVGETGV 652

Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
           ++V      +   +     +   L       +  S    LK   ++  +  +
Sbjct: 653 FLVQLNKKQEAVALDSYATYAEALKAGTQNSIFFSSYNALKETATIEDNRAV 704


>gi|313681760|ref|YP_004059498.1| ppic-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154620|gb|ADR33298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 280

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 68/160 (42%), Gaps = 10/160 (6%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------GKKFI 297
             I++   E++A ++ N  ++   E      ++  ++ +A     S+K        K+F+
Sbjct: 115 DAIKVDAKEVKAYFDTNPNEFIDKEKIHARHILVRSKTQAQSIIASMKTLSGDRLKKEFM 174

Query: 298 QLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
             A+       +     LG F +  +   S  D+ F+L      +  +   FGY + +V 
Sbjct: 175 AQAKLFSIGPSAARGGDLGYFPRGQMV-ASFNDAAFALKTGTVSSIPVQSQFGYHVIYVE 233

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           + KP+  + F  VK  I  ++++ K  E +++    L E 
Sbjct: 234 DRKPAKKMGFDAVKSFIEQRLKMDKFKETMEKKMAALHEK 273


>gi|226940618|ref|YP_002795692.1| signal peptide protein [Laribacter hongkongensis HLHK9]
 gi|226715545|gb|ACO74683.1| Probable signal peptide protein [Laribacter hongkongensis HLHK9]
          Length = 263

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K+  +S+ +++AEY+K K      +     Q++  ++ EA+     LKKG  F  +
Sbjct: 106 DDLAKQNPVSDAQVRAEYDKLKSALSGQKEVQARQIIVGSEAEANAVIAQLKKGGNFEAI 165

Query: 300 AEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A+++ K      +   +G  +   +    LAD++  L K            G+ I  V N
Sbjct: 166 AKQKSKDPAAKQNGGDMGWGNLGVMAKP-LADTLKPLGKGQYTQQPFKSDLGWHIFKVEN 224

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           ++ +    F EVK  ++ QM+     + + +   + +
Sbjct: 225 VRDAKVPQFDEVKPQLSRQMQGAAVEKALNDLRGKAK 261



 Score = 37.3 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 2/131 (1%)

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN-KFFGY 546
           K+ +  +      ++AN ++ +  K G NF  I K              M   N      
Sbjct: 134 KEVQARQIIVGSEAEANAVIAQLKKGG-NFEAIAKQKSKDPAAKQNGGDMGWGNLGVMAK 192

Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
                +           P ++ L + +FKV N +   V + D+    L++ M    ++  
Sbjct: 193 PLADTLKPLGKGQYTQQPFKSDLGWHIFKVENVRDAKVPQFDEVKPQLSRQMQGAAVEKA 252

Query: 607 IAYLKSQYSVT 617
           +  L+ +  + 
Sbjct: 253 LNDLRGKAKIQ 263


>gi|295700292|ref|YP_003608185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
 gi|295439505|gb|ADG18674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
          Length = 265

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 5/170 (2%)

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
           +A     I  +   + +  KK  +S+D+L+A Y   K K  S     V  ++  +Q EA 
Sbjct: 95  QAQATWEIEIVRAYMQDFLKKNPVSDDQLKAMYNDMKAKGGST-QYKVRHILVKDQGEAK 153

Query: 285 EAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           +    L KG  F  LA+E   +    +   LG  +   +     AD++  L K       
Sbjct: 154 DIIAKLNKGASFGDLAKESIDADTRYNGGDLGWITSSKVVKP-FADAVSHLHKGEYTRMP 212

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +   +G+ +  V + +P    SF+++K  +  Q +       VK    + 
Sbjct: 213 VKTGYGFHVIEVDDTRPLQVPSFEDMKPMLYQQAQAELVDRMVKNLRAKA 262


>gi|325662683|ref|ZP_08151280.1| hypothetical protein HMPREF0490_02020 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471022|gb|EGC74249.1| hypothetical protein HMPREF0490_02020 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 246

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 6/162 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295
             + E  K + ++++E+ A YE+NK+++   E  + + ++  ++++     +S+  G+K 
Sbjct: 83  LAMRETLKDVTVTDEEVAAYYEENKQQFTKGETVSAKHILVDSEEKCTSVLESITSGEKA 142

Query: 296 FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F   A+E     S      LG F K  +       +    A+ G     +   FGY +  
Sbjct: 143 FEDAAKEASTCPSGARGGDLGEFGKGQMVKEFEEAA--FAAEIGHVVGPVKTQFGYHLIK 200

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           V     +   +F EVK+ I   +   K +       + L+E 
Sbjct: 201 VEKKNEASVAAFDEVKEAIKRNLIQQKQNAAYNAKVQELKEK 242


>gi|299537572|ref|ZP_07050865.1| foldase protein prsA 1 precursor [Lysinibacillus fusiformis ZC1]
 gi|298726941|gb|EFI67523.1| foldase protein prsA 1 precursor [Lysinibacillus fusiformis ZC1]
          Length = 326

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 101/276 (36%), Gaps = 28/276 (10%)

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVHEK 242
           ++  + +    + ++  + + ++     +                 +K    +     + 
Sbjct: 57  MVTEKVLADKYEVTDKEIKEAYDTTASQFGDGFTQALAESGLTEQGFKDSLRVQLLQEKA 116

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
            K   I  ++++  YE+ K +           ++  ++K A E  + +K G KF  +A+E
Sbjct: 117 LKDQAIKEEDVKKYYEQMKTELNG------RHILVADEKTAKEVIEKIKGGAKFEDVAKE 170

Query: 303 Q----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
                G +     LG FS   + D    D+ ++L +    +  +  SFGY +  +++ + 
Sbjct: 171 YSTDTGSAQKGGELGWFSVGSMVD-EFNDAAYAL-ELNTLSEPVKSSFGYHVIEITDKRD 228

Query: 359 SF-TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
                SF++ +++I + M       +  E    L++ +A      ++   +K +   L  
Sbjct: 229 VKGVGSFKDEEENIRSTMLNKL--NQTGEAQTILKDIVAKMAKDADVKTSDKDLKEPLKF 286

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
                ++       A    E+   +   +D     D
Sbjct: 287 FTTTSEEQAKAAEEAAKKAEENAPKEDSEDKAEDTD 322


>gi|296161011|ref|ZP_06843822.1| SurA domain protein [Burkholderia sp. Ch1-1]
 gi|295888710|gb|EFG68517.1| SurA domain protein [Burkholderia sp. Ch1-1]
          Length = 453

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/427 (12%), Positives = 122/427 (28%), Gaps = 78/427 (18%)

Query: 30  LSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
           +     S S   TV      V    +               ++Q+   V   ++     L
Sbjct: 28  VQAQALSGSSGQTVDTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQ-----L 82

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
            +++L+ +V      Q  ++ G+  D   V   + R        N  + DV+ SR+  +G
Sbjct: 83  RQQVLNQMVLERIQLQKAKEDGINIDDATVQKTLERLAA----ANNLTLDVYRSRIEAQG 138

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD----------- 193
           +    +       L+ + +    V   +  S+  +     +    R  +           
Sbjct: 139 VPWSTFTSDARTELTLSRLREKEVDSKVTVSDAEV---ANYIASQRGPNAGLTSDLHLQH 195

Query: 194 -YIVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRA------------------------ 226
            ++           + +         + K   N+                          
Sbjct: 196 IFLKAPLNASETDIEAAQRKAQALLAEAKGGANFEKLAKSNSQAPDASKGGDTGFVSPSK 255

Query: 227 --PEYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF- 277
             PE+ + +  L         I  ++  E+    ++   +  S +        V  ++  
Sbjct: 256 LPPEFVKAASTLRPGEINPDLIRTNDGFEIVRLVDRRTGQGTSSDAPKLVQTHVRHILLR 315

Query: 278 --------PNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLA 326
                     +++  E    +  G  F + A    + G S     LG  S          
Sbjct: 316 VGDGMSEPQARQKLLEIKNEIAAGGDFAKFAHTYSQDGSSSQGGDLGWISPGETV-PEFE 374

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            ++ SL + G  +  +   +GY +  V   + S   S  +        +   KA +   +
Sbjct: 375 RAMNSL-QDGQISDPVRSEYGYHLIQVLGRRESEG-SVAQQMDLARQAIGQRKAEQAYAD 432

Query: 387 DYKRLEE 393
             + L +
Sbjct: 433 WLRELRD 439


>gi|313203966|ref|YP_004042623.1| ppic-type peptidyL-prolyl cis-trans isomerase [Paludibacter
           propionicigenes WB4]
 gi|312443282|gb|ADQ79638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paludibacter
           propionicigenes WB4]
          Length = 704

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 96/720 (13%), Positives = 218/720 (30%), Gaps = 124/720 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           L+ IR  S+  +    + +  + F++       + F       V  V    +    +  +
Sbjct: 4   LDRIR--SKGVLLVAVVGLALLAFIVGDFLKEGSTFFNKSKEIVGKVAGDDINIKEYTAA 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA---------------------- 97
            +Q   +   + G    +E   +  + + + ++++S                        
Sbjct: 62  IEQMTEVYKIETGRAELNEEM-TTQIRQSVWESMMSEKILNAEAKKLGLAVSADELSDRL 120

Query: 98  -------------------------TLDQFIEDIGLEADHGRVWGEIARSPLF-----HG 127
                                     L QF+  +     +  +  +IA++  +       
Sbjct: 121 IGNNIHPLIMQRRTFAGENGQFSRPALVQFLSSLEQAPANEEMKQQIAQAKNYWNFWEKT 180

Query: 128 KDNKFSHDVFVSRLA----REGINEKEYIDHYTKMLSRTDVVGMFVG----GMRPSNLLL 179
             N    + + + ++       ++ K   +     +    VV  +       ++ S+  +
Sbjct: 181 VKNSILQEKYNALISKSVCANSLDAKMSFEDKKTSVDVAYVVQPYFAVPDADIKVSSSEI 240

Query: 180 DQAKRFYFENRSVDY-IVLNNRHVPAIADPSN-AVLTQWFEKYKDNYRAPEYKRISYILF 237
                   E    D     +         P +      W +K +  ++       + +  
Sbjct: 241 KDLYNKKKEQFKQDANCSFSYVAFDIKPLPEDYKEGEAWMKKLEGEFKTTADV-AALVNS 299

Query: 238 DVHEKEKKIEISNDELQAEYEKN-------------------------KEKYFSPEIRTV 272
           +          S   + A  +                           +      +   +
Sbjct: 300 NSDVMYDGRNYSERTVPALLKDFAFGSATGAVYGPSFVNDTYTMARVMQGGIMQSDSVKL 359

Query: 273 EQL--VFPNQKEADEAFQSLKKGKKFIQLAEEQG----KSLSDISLGSFSKEY-IPDVSL 325
             +  +  +  +AD    ++K G  F  LA++       + +   +G   +    P+  +
Sbjct: 360 RHIFLLAKDATKADSLVSAIKGGADFGALAKKYSAVKQTAANGGEIGWMQEATQGPEKEI 419

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI--ANQMRITKASEK 383
               FS +K   FT  I    G  I  V +  P+       VK  I     +  +K+  K
Sbjct: 420 TSQAFSKSKNDIFT--IKDEQGVQIFQVMDKTPARRK----VKLAILERKIVPSSKSYSK 473

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +  D K+    L+   + D+ ++ +  +      V  +      +++A I    Q++  V
Sbjct: 474 IYNDAKQFAVDLS-ADNFDKKAKEKGYIVRPAAEVLRST-----EKIADINQSRQIIRWV 527

Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
           F      +    V      ++     E      R LE+V   +K +    K AE +    
Sbjct: 528 FNSS--KNDVSDVFDCGTKFVVAMTTELNKKGYRSLEKVSDQLKAEIIKDKKAESMIK-- 583

Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE--NKFFGYDGISQVFSGPVEMVK 561
             L  E SK G +   +   L  S+ T   +N    +     F    I +V    +  V 
Sbjct: 584 -NLSAELSKTG-SLEGLASLLKDSVKTAPAVNFASYQLGTAGFEPAVIGKVTKTALGKVS 641

Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDKFIS-YLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
             PI+      V + +N +V P     +     L   ++  L  ++   +K +  +T + 
Sbjct: 642 T-PIKGNAGVYVVRTSNKQVNPQAFNAQLEKMQLNARLSYSLSYTLFQDMKEKADITDNR 700


>gi|301382733|ref|ZP_07231151.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063472|ref|ZP_07255013.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tomato K40]
          Length = 440

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/423 (12%), Positives = 137/423 (32%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V      +  L  ++LD L+     
Sbjct: 31  DSVVAIVDNDVIMKSQMGQRVR-EVQQTIAKRGSGVPP----AADLQPQVLDRLILENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++ ++  +   + +
Sbjct: 86  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYEDAREQVRREM 141

Query: 160 SRTDVVGM-FVGGMRPSNLLL------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V        ++ S   +      DQ K    E   +  I++      +      A 
Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + I +  
Sbjct: 202 VKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPIGDVT 261

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVF---------PNQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            +  A + ++ ++
Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIE 321

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA+    + G +L+   L       +      D + S   +G+ +     ++G
Sbjct: 322 NGEDFATLAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRD-VMSSTPQGELSKPFKTAYG 379

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + +   A + +R  K  E+++   +++ +   +   +   ++
Sbjct: 380 WHVLEVLGRRATDATG--QARDQQALSVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437

Query: 407 REK 409
             +
Sbjct: 438 AAQ 440


>gi|83648743|ref|YP_437178.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
 gi|122070647|sp|Q2S9C1|SURA_HAHCH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|83636786|gb|ABC32753.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
          Length = 434

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/408 (13%), Positives = 121/408 (29%), Gaps = 64/408 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V +S   +   +    + Q+    +  E      L +K+LD LV  +  
Sbjct: 35  DRVVAVVNDDIVLYSELQDRASRIKDKLRQQ-KTPLPPEAV----LHEKVLDQLVLESIQ 89

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G+     ++   +        K N  + D F   L+ EG+  +   +   + +
Sbjct: 90  MQMADRGGIRVSDSQLNQTMQNI----AKQNGMTLDQFQQALSEEGVTYQSAREQIRREM 145

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYF--ENRSVDYIVLNNRHVPAIADPSNAVLTQ- 215
             + V    V   +R +   ++   +     E R+ +Y  L +  +    +PS+A   + 
Sbjct: 146 IISRVQQRSVDSRVRVTEKEVNDFLKSASAKEQRAEEYH-LAHILIALPENPSDAQRKEA 204

Query: 216 -----------------------WFEKYKDN------YRAPEYKRISYILFDVHEKEKKI 246
                                  + +           +R P+     +          + 
Sbjct: 205 ESKVEKIRSQLDQGVDFKQLAITYSDASTATQGGDLGWRKPDQVPSLFADVAPKLAPGQT 264

Query: 247 EI-----SNDELQAEYEKNKEKYFSPEIRTVEQLV---------FPNQKEADEAFQSLKK 292
                  S     A  EK        E   V  ++            +K  +E +  ++ 
Sbjct: 265 SEPIRNSSGVHFVAMLEKRGGVSKVVEQSKVRHILVQQNELRDEIAAKKLIEEIYGKVQA 324

Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G+ F +LA+          +  SL   +   +      D +      G  +     +FG+
Sbjct: 325 GEDFAELAKAYSDDAVSAAAGGSLDWVNPGDMV--PEFDQMMRETPVGAVSKPFQSTFGW 382

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
            I  V + + +               +   K  E+++     + +   
Sbjct: 383 HILQVQDRREADIGDRLMA-SQARQVLHRRKYEEELQNWLSEIRDEAF 429



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 68/206 (33%), Gaps = 27/206 (13%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------- 278
            + +          + ++ ++  E+    +    K    E   +  ++            
Sbjct: 142 RREMIISRVQQRSVDSRVRVTEKEVNDFLKSASAKEQRAEEYHLAHILIALPENPSDAQR 201

Query: 279 --NQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
              + + ++    L +G  F QLA    +   +     LG    + +P +  AD    LA
Sbjct: 202 KEAESKVEKIRSQLDQGVDFKQLAITYSDASTATQGGDLGWRKPDQVPSL-FADVAPKLA 260

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASEKVK 385
             G  +  I  S G     +   +   +   ++ K         ++ +++   K  E++ 
Sbjct: 261 -PGQTSEPIRNSSGVHFVAMLEKRGGVSKVVEQSKVRHILVQQNELRDEIAAKKLIEEIY 319

Query: 386 EDYKRLEEF--LALGTSMDEISRREK 409
              +  E+F  LA   S D +S    
Sbjct: 320 GKVQAGEDFAELAKAYSDDAVSAAAG 345


>gi|328952685|ref|YP_004370019.1| SurA domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453009|gb|AEB08838.1| SurA domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 316

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 106/355 (29%), Gaps = 78/355 (21%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +  S    + K        +      ++   +    ++ L+ L+      + 
Sbjct: 30  VAQVNDEVITLSELEQAMKYI------QANPAAGAKVKNNQAFRRQALEMLIDRKLAKEE 83

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            +  G+      +   +        K      +     LA++G+  ++          R 
Sbjct: 84  AKRYGITVPEKEIKKTVDDI---KQKYGFTDDETLSKALAKDGMTMEQ---------LRQ 131

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            ++                               L    V +    S+A + Q++E+   
Sbjct: 132 QLIEQIQQD------------------------RLMLSTVRSKVKVSDAEIQQFYEQ--- 164

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
            YR  + + +   + ++           +E++A                           
Sbjct: 165 RYRQADNR-VHIKIINLPVAAGSSAEEQEEVRAL-------------------------- 197

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           A+      ++G+ F +L E   KS        LG   +  I D    + + +L + G+  
Sbjct: 198 AERILIQARRGESFDKLMETYSKSTPNVPGGDLGYIRQSDI-DPRFFEFLSNL-RPGEIV 255

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
             +   FG+ I  + + K     S  E + +I   +   + ++   E  + + + 
Sbjct: 256 -PLRAPFGFQIIKMVDAKVGKAKSLSEARGEIEQILIREQMAKLFSEYLQSIRQK 309


>gi|299148688|ref|ZP_07041750.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_23]
 gi|298513449|gb|EFI37336.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_23]
          Length = 713

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 96/722 (13%), Positives = 213/722 (29%), Gaps = 125/722 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     +  V  V    +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117
           +   ++    G    ++  ++  +  ++  + V+   +++  + +GL      +      
Sbjct: 61  EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119

Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150
                + ++P F       F  D+    L     ++E +                     
Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQK 178

Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179
                     Y    +K L    V                + G+  S+++          
Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238

Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224
                    +  + Y E R + YI +       +   +    D + A L    + Y   +
Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATAQLATTTDDYTS-F 297

Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267
                    Y+    ++     ++     +  + A Y              K   K  + 
Sbjct: 298 IRSVGSEAPYVDLFYNKTAFPSDVVARLDSASVGAIYGPYYNGADNTINSFKIVAKAAAA 357

Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319
           +     Q+    +        AD  + ++K G  F  LA++ G     + ++   +    
Sbjct: 358 DSVEFRQIQVYAEDALKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
           I   +L     S         +++   G   VI  V+N K         V   I  ++  
Sbjct: 418 IDGDNL--KFISAINNTGVNELVNLPMGQANVILQVTNKKSVKDKYKVAV---IKREVEF 472

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
           +K  E     Y    +F+A   S++++    +     L  +D          +  +   +
Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528

Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           + L   F K  P          +    M V +    P   R L+ V   ++ +    K A
Sbjct: 529 EALRWTFDKAKPGDVSGLYECGESDHMMVVGLVGIKPEGYRPLKAVQDQLRAEIVKDKKA 588

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
           E++ +           + K   +   +    ++T      +           +    S  
Sbjct: 589 EKIMADMKAANATSFNQYKEMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASVA 645

Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
            E     PI+      V +V    K+    +     + LT M  +     ++  L  + +
Sbjct: 646 PENQLSAPIKGNAGVFVLQVYGRDKLNETFDAKAEEATLTNMHAR-FASRLMNDLYLKAN 704

Query: 616 VT 617
           V 
Sbjct: 705 VK 706


>gi|322379924|ref|ZP_08054201.1| peptidyl-prolyl cis-trans isomerase [Helicobacter suis HS5]
 gi|321147622|gb|EFX42245.1| peptidyl-prolyl cis-trans isomerase [Helicobacter suis HS5]
          Length = 318

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 68/159 (42%), Gaps = 14/159 (8%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------GKKFIQ 298
           K +I  D+L+  Y+ NK ++   E +    ++   + +A      L K       K+FI 
Sbjct: 151 KEDIPEDQLRKYYQDNKTQFVQQEAK-ARHILVKTEADAKRVISELNKTPKTRIEKEFID 209

Query: 299 LAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           +A  +    +         LG F K  +     ++++F+L         +   FGY + +
Sbjct: 210 IANRESIDPNTKNSKNGGDLGKFQKNQMA-PEFSNAVFALKPGSYTKTPVKTEFGYHVIY 268

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +     T +F++ ++ I   ++  +  E VK + ++L
Sbjct: 269 LMSKNEPKTPTFEQARQTIIGILKEHQFQEYVKGELEKL 307


>gi|28199704|ref|NP_780018.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1]
 gi|182682448|ref|YP_001830608.1| SurA domain-containing protein [Xylella fastidiosa M23]
 gi|81724959|sp|Q87AJ0|SURA_XYLFT RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|28057825|gb|AAO29667.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1]
 gi|182632558|gb|ACB93334.1| SurA domain [Xylella fastidiosa M23]
 gi|307578730|gb|ADN62699.1| SurA domain-containing protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 463

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/431 (11%), Positives = 120/431 (27%), Gaps = 66/431 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S    +            G +   E      L +++L+ L+     
Sbjct: 34  DRIVAVVDDNVVLKSELDRAIHNVKSQYVGHEGQLPPDEV-----LQRQVLERLILIKLQ 88

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +  G+      +   I+       ++NK S D    +L  EGI+  E+       +
Sbjct: 89  VARAQTNGIRVSDDELNQAISSI----AENNKTSVDGLRQKLVAEGISFPEFRQSVRDEI 144

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYF--ENRSVDYIVLNNRHVPAIADPSNAV---- 212
           +   +   F    +  S   +D A           + +I+++          + A     
Sbjct: 145 TVHHLRQGFAQSRIVVSEGEVDTALAQANSGAQYHLQHILVSLPDGATSEQIAIAQKKIN 204

Query: 213 -LTQWFEKYKDNYRA-------------------------PEYKRISYILFDVHEKEKKI 246
            +    +K +  + A                         PE            +    +
Sbjct: 205 GIKSVIDKGELAFSAAAVRYSDSPNALESGDLGWRSLDEIPEAFAQMVQTMKPGQIVGPL 264

Query: 247 EISND-------ELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSL 290
             ++        E++        +  + E      ++            + + D     +
Sbjct: 265 RGTSGFQLLKLVEVRDSTAAAGPRQMATEY-HARHILVRITDKQKEAQAKAKIDTLRARI 323

Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F  +A E  +  +       LG F  +        + + +LA  G+ +     + 
Sbjct: 324 AGGADFQTVARESSEDANNSNQGGDLGWFPSDAF-GADFGNHVKALA-DGNVSEPFRSAA 381

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ I      + +   + +  +  I + +   K  E  +   + L     +   ++E + 
Sbjct: 382 GWHIVQRLGTRQTDV-TRENQRAQIRDTIGQRKLEESYERFLRELRSEAYVSLQIEEPAD 440

Query: 407 REKIVSIDLPL 417
                S  +  
Sbjct: 441 DHHTPSAAVTP 451


>gi|23098603|ref|NP_692069.1| post-translocation molecular chaperone [Oceanobacillus iheyensis
           HTE831]
 gi|46396906|sp|Q8CXK4|PRSA_OCEIH RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|22776830|dbj|BAC13104.1| protein secretion (post-translocation molecular chaperone)
           [Oceanobacillus iheyensis HTE831]
          Length = 299

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 80/179 (44%), Gaps = 17/179 (9%)

Query: 222 DNYRAPEY-KRISYI-LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
             +   E  + I Y+ +       + +EI+ ++LQ  YE+   +         + ++  N
Sbjct: 96  QQFGGEEQLREIMYVSMLQEKAAAEDVEITEEDLQELYERKNTEI------QAQHILLEN 149

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKK 335
           +++  E  Q ++ G+ F +LA+E             LG FS   +      ++ FSL + 
Sbjct: 150 EEDVAEVQQKIEDGEDFGELAQEYSTDTGSAENGGDLGYFSAGSMV-PEFEEAAFSL-EA 207

Query: 336 GDFTPVIHGSFGYVIAHVSNI--KPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYKRL 391
           G+ +  +  + G  I  V+++  K      F++VKK++  ++ + +    +++E   +L
Sbjct: 208 GEISDPVQSTHGTHIIKVNDVREKEESIGEFEDVKKELEREILLNRVDQTQIQEKINKL 266


>gi|225076364|ref|ZP_03719563.1| hypothetical protein NEIFLAOT_01408 [Neisseria flavescens
           NRL30031/H210]
 gi|224952307|gb|EEG33516.1| hypothetical protein NEIFLAOT_01408 [Neisseria flavescens
           NRL30031/H210]
          Length = 329

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/356 (8%), Positives = 97/356 (27%), Gaps = 90/356 (25%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                  V  + +       +  Q    + +         +  +  L +++L  +++ + 
Sbjct: 52  SDGIAAVVDNEVITHRQVAQAVAQARQTMPK-------GTQMDANELRQQVLAQMINQSL 104

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  +   ++A    +   IA +P                                 + 
Sbjct: 105 ILQAGKRRNIQATDSEIEAVIAHNPNIKNPS-----------------------AAVRQD 141

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           ++ + +V                                  + +   +  S++ + ++ E
Sbjct: 142 IADSIIVEKVRQ-----------------------------QAIMQNSRVSDSEVARYIE 172

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + K                        + +   +   +Y        +            
Sbjct: 173 QAKQQ---------------------GVTLPEADPVRQYHAQHILIKADNDNAA----VG 207

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
            +    + +   + G  F  LA +  +  S      LG F+   +      +++  L K 
Sbjct: 208 AESTIRKIYTQARSGADFGGLARQYSQDSSAGNGGDLGWFADGMMV-APFEEAVHKL-KP 265

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G  +  +   FG+ I  +++++ + T   +  +  +   +   KA +      + L
Sbjct: 266 GQISAPVRTQFGWHIIKLNDVREAGTPE-ERQQNAVRQYLSQQKAQQATTNLLREL 320


>gi|15594454|ref|NP_212242.1| basic membrane protein [Borrelia burgdorferi B31]
 gi|195941846|ref|ZP_03087228.1| basic membrane protein [Borrelia burgdorferi 80a]
 gi|216264206|ref|ZP_03436198.1| basic membrane protein [Borrelia burgdorferi 156a]
 gi|218249766|ref|YP_002374636.1| basic membrane protein [Borrelia burgdorferi ZS7]
 gi|221217448|ref|ZP_03588919.1| basic membrane protein [Borrelia burgdorferi 72a]
 gi|223889066|ref|ZP_03623655.1| basic membrane protein [Borrelia burgdorferi 64b]
 gi|224532923|ref|ZP_03673533.1| basic membrane protein [Borrelia burgdorferi WI91-23]
 gi|224533973|ref|ZP_03674557.1| basic membrane protein [Borrelia burgdorferi CA-11.2a]
 gi|225549343|ref|ZP_03770316.1| basic membrane protein [Borrelia burgdorferi 94a]
 gi|225549885|ref|ZP_03770847.1| basic membrane protein [Borrelia burgdorferi 118a]
 gi|226320700|ref|ZP_03796258.1| basic membrane protein [Borrelia burgdorferi 29805]
 gi|226321981|ref|ZP_03797506.1| basic membrane protein [Borrelia burgdorferi Bol26]
 gi|2687994|gb|AAC66497.1| basic membrane protein [Borrelia burgdorferi B31]
 gi|215980679|gb|EEC21486.1| basic membrane protein [Borrelia burgdorferi 156a]
 gi|218164954|gb|ACK75015.1| basic membrane protein [Borrelia burgdorferi ZS7]
 gi|221192726|gb|EEE18942.1| basic membrane protein [Borrelia burgdorferi 72a]
 gi|223885315|gb|EEF56416.1| basic membrane protein [Borrelia burgdorferi 64b]
 gi|224512122|gb|EEF82513.1| basic membrane protein [Borrelia burgdorferi WI91-23]
 gi|224512809|gb|EEF83176.1| basic membrane protein [Borrelia burgdorferi CA-11.2a]
 gi|225369576|gb|EEG99027.1| basic membrane protein [Borrelia burgdorferi 118a]
 gi|225370201|gb|EEG99641.1| basic membrane protein [Borrelia burgdorferi 94a]
 gi|226232571|gb|EEH31325.1| basic membrane protein [Borrelia burgdorferi Bol26]
 gi|226233916|gb|EEH32639.1| basic membrane protein [Borrelia burgdorferi 29805]
 gi|312148208|gb|ADQ30867.1| basic membrane protein [Borrelia burgdorferi JD1]
 gi|312149453|gb|ADQ29524.1| basic membrane protein [Borrelia burgdorferi N40]
          Length = 336

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 116/366 (31%), Gaps = 80/366 (21%)

Query: 24  PFLIWGLSD--ALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
            FL W +     + S + ++ V  +     + +  + F +     + +  +  G  +   
Sbjct: 3   SFLFWVILGTVGISSFAQNTPVAIINLYKNEIITKTGFDSK----VDIFKKTQGRDLTDA 58

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
                   K++L  L++     Q     G++     V   I     F   +  F+ +   
Sbjct: 59  E------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN--FTDEQIK 108

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
             + ++G N  E +    + LS   +V                             +   
Sbjct: 109 QMIEKQGTNWGELLSSMKRSLSSQKLV-----------------------------LKQA 139

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
                 I  PS   + +++E  K  +  P+  R+S+I F   +K++   +          
Sbjct: 140 QPKFSEIKTPSEKEIVEYYEANKTKFVNPDISRVSHIFFSTKDKKRSDVLDQA------- 192

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
           KN            +++ F      +EA +     +     ++ +   L  +S G  + +
Sbjct: 193 KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFLSRGDQNAQ 237

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---------VKK 369
            +        +F+   KGD +  I    G+ I  V+       +   +         VK 
Sbjct: 238 NLLGADFVKEVFNF-NKGDISSPIASKEGFHIVKVTEKYAQRFLGLNDKVSPTADLIVKD 296

Query: 370 DIANQM 375
            I N M
Sbjct: 297 AIRNNM 302


>gi|261380640|ref|ZP_05985213.1| putative cis-trans isomerase [Neisseria subflava NJ9703]
 gi|284796620|gb|EFC51967.1| putative cis-trans isomerase [Neisseria subflava NJ9703]
          Length = 329

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/356 (9%), Positives = 97/356 (27%), Gaps = 90/356 (25%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                  V  + +       +  Q    + +         +  +  L +++L  +++ + 
Sbjct: 52  SDGIAAVVDNEVITHRQVAQAVAQARQTMPK-------GTQMDANELRQQVLAQMINQSL 104

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  +   ++A    +   IA +P                                 + 
Sbjct: 105 ILQAGKRRNIQATDSEIEAVIAHNPNIKNPS-----------------------AAVRQD 141

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           ++ + +V                                  + +   +  S++ + ++ E
Sbjct: 142 IADSIIVEKVRQ-----------------------------QAIMQNSRVSDSEVARYIE 172

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + K                        I +   +   +Y        +            
Sbjct: 173 QAKQQ---------------------GITLPEADPVRQYHAQHILIKADNDNAA----VG 207

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
            +    + +   + G  F  LA +  +  S      LG F+   +      +++  L K 
Sbjct: 208 AESTIRKIYSQARSGADFGGLARQYSQDGSAGNGGDLGWFADGMMV-APFEEAVHKL-KP 265

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G  +  +   FG+ I  +++++ + T   +  +  +   +   KA +      + L
Sbjct: 266 GQISAPVRTQFGWHIIKLNDVREAGTPE-ERQQNAVRQYLSQQKAQQATTNLLREL 320


>gi|28867781|ref|NP_790400.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|81732691|sp|Q88A44|SURA_PSESM RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|28851016|gb|AAO54095.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 428

 Score = 94.3 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/423 (12%), Positives = 137/423 (32%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V      +  L  ++LD L+     
Sbjct: 19  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPP----AADLQPQVLDRLILENLQ 73

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++ ++  +   + +
Sbjct: 74  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYEDAREQVRREM 129

Query: 160 SRTDVVGM-FVGGMRPSNLLL------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V        ++ S   +      DQ K    E   +  I++      +      A 
Sbjct: 130 IISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 189

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + I +  
Sbjct: 190 VKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPIGDVT 249

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVF---------PNQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            +  A + ++ ++
Sbjct: 250 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIE 309

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA+    + G +L+   L       +      D + S   +G+ +     ++G
Sbjct: 310 NGEDFATLAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRD-VMSSTPQGELSKPFKTAYG 367

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + +   A + +R  K  E+++   +++ +   +   +   ++
Sbjct: 368 WHVLEVLGRRATDATG--QARDQQALSVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 425

Query: 407 REK 409
             +
Sbjct: 426 AAQ 428


>gi|229091310|ref|ZP_04222528.1| Foldase protein prsA 1 [Bacillus cereus Rock3-42]
 gi|228692076|gb|EEL45817.1| Foldase protein prsA 1 [Bacillus cereus Rock3-42]
          Length = 149

 Score = 94.3 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 53/142 (37%), Gaps = 6/142 (4%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLAD 327
            V  ++  ++K A E  + +  G+ F  LA++  +       G     + P        +
Sbjct: 2   KVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEE 61

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           + + L   G  +  +  ++GY I  V++ K      F EVK  I   +   +  +   + 
Sbjct: 62  AAYKL-DAGQVSEPVKTTYGYHIIKVTDKKE--LKPFDEVKDSIRKDIEQQRLQDTTGKW 118

Query: 388 YKRLEEFLALGTSMDEISRREK 409
            +++   L     +    +  K
Sbjct: 119 KQQVVNELLKDADIKVNDKEFK 140



 Score = 37.3 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
            K  + V E    G++F  + K       +  Q   +             +         
Sbjct: 11  EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 70

Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614
              P++    Y + KVT+ K + P  E KD     + Q   +D        V+  L    
Sbjct: 71  VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 130

Query: 615 SVTVHDN 621
            + V+D 
Sbjct: 131 DIKVNDK 137


>gi|152974625|ref|YP_001374142.1| peptidylprolyl isomerase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152023377|gb|ABS21147.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus cytotoxicus
           NVH 391-98]
          Length = 282

 Score = 94.3 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 14/165 (8%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           K      E  + S       EK  +  I+++E + +Y          +    + ++  ++
Sbjct: 91  KQQGIKEETLKTSVRAQLAQEKAIEKSITDEEAKKKYRD--------KRVFAKHILVKDE 142

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGD 337
           + A +  + L +GK F  LA++  +       G    E  P        D+ F + KK +
Sbjct: 143 ETAKKVKEELGQGKSFEDLAKQYSEDPGSKEKGGDLGELKPGTLVKEFEDAAFKM-KKDE 201

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            +  +  SFGY I  V++IK +    F+E K  I  ++   K  +
Sbjct: 202 VSEPVKSSFGYHIIKVTDIKDA--KPFKEEKAAIKKEIAQQKLQD 244


>gi|255020025|ref|ZP_05292098.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970554|gb|EET28043.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus
           ATCC 51756]
          Length = 258

 Score = 94.3 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 7/157 (4%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K+  +   E+QA Y K        E   V  ++   + EAD+    LK GKKF  L
Sbjct: 100 DQYIKEHPVPESEIQAAYNKFVAAMGKKEY-EVRHILVKTKAEADKILAELKAGKKFSTL 158

Query: 300 AEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           AE+     +       LG      +     A++I            +   FGY I  V  
Sbjct: 159 AEKYSIDKASAAHGGELGWIVPGMVV-PPFAEAIEKAPIDKPV-GPVQTQFGYHIIEVQA 216

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            KP        +K  I  Q++  +A++ V +   + +
Sbjct: 217 TKPLTPPPLSAMKDRIKAQLQQEEAAKFVSDLRSQAK 253



 Score = 43.8 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 47/159 (29%), Gaps = 9/159 (5%)

Query: 468 IKESIPARDRKLEEVLTD----VKKDWKTVKTAE----EVSSKANQLVLEYSKEGKNFRD 519
           + + I        E+       V    K          +  ++A++++ E  K GK F  
Sbjct: 99  VDQYIKEHPVPESEIQAAYNKFVAAMGKKEYEVRHILVKTKAEADKILAEL-KAGKKFST 157

Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
           + +       +      +            ++            P++    Y + +V  +
Sbjct: 158 LAEKYSIDKASAAHGGELGWIVPGMVVPPFAEAIEKAPIDKPVGPVQTQFGYHIIEVQAT 217

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
           K             +   + ++     ++ L+SQ  + +
Sbjct: 218 KPLTPPPLSAMKDRIKAQLQQEEAAKFVSDLRSQAKIDI 256


>gi|160887185|ref|ZP_02068188.1| hypothetical protein BACOVA_05201 [Bacteroides ovatus ATCC 8483]
 gi|156107596|gb|EDO09341.1| hypothetical protein BACOVA_05201 [Bacteroides ovatus ATCC 8483]
          Length = 713

 Score = 94.3 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 94/722 (13%), Positives = 210/722 (29%), Gaps = 125/722 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     +  V  V    +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117
           +   ++    G    ++  ++  +  ++  + V+   +++  + +GL      +      
Sbjct: 61  EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119

Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150
                + ++P F       F  D+    L     ++E +                     
Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQK 178

Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179
                     Y    +K L    V                + G+  S+++          
Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238

Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224
                    +  + Y E R + YI +       +   +    D +   L    E Y   +
Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTS-F 297

Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267
                    Y+    ++     ++     +  +   Y              K   K  + 
Sbjct: 298 IRSTGSEAPYVDLFYNKTAFPSDVVARLDSASVGTIYGPYYNGADNTINSFKIVAKAAAA 357

Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319
           +     Q+    +        AD  + ++K G  F  LA++ G     + ++   +    
Sbjct: 358 DSVEFRQIQVYAEDAVKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
           I   +L     S         +++   G   VI  V+N K         V   I  ++  
Sbjct: 418 IDGDNL--KFISAINNTGVNELVNLPMGQANVILQVTNKKSVKDKYKVAV---IKREVEF 472

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
           +K  E     Y    +F+A   S++++    +     L  +D          +  +   +
Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528

Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           + L   F K  P          +    M V +    P   R L+ V   ++ +    K A
Sbjct: 529 EALRWTFDKAKPGDVSGLYECGESDHMMVVGLVGIKPEGYRPLKAVQDQLRAEIVKDKKA 588

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
           E++ +           + K   +   +    ++T      +           +    S  
Sbjct: 589 EKIMADMKAANATSFNQYKEMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASAA 645

Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
                  PI+      V +V    K+    +     + LT M  +     ++  L  + +
Sbjct: 646 EVNQLSAPIKGNAGVFVLQVYGKDKLNETFDAKAEEATLTNMHAR-FASRLMNDLYLKAN 704

Query: 616 VT 617
           V 
Sbjct: 705 VK 706


>gi|75758814|ref|ZP_00738928.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493718|gb|EAO56820.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 254

 Score = 94.3 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 14/167 (8%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           K      E  + S       EK  +  I++ +++A++E  K++           ++  ++
Sbjct: 93  KQQGIKEETIKNSVRAQLAQEKAVEQSITDKDVKAKFEDYKKEI------KASHILVKDE 146

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKG 336
           + A +    L +GK F +LA++  +          LG F    +      ++   L KK 
Sbjct: 147 ETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVK-EFEEAAQKL-KKD 204

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           + +  +   FGY I  V++       +F + K DI   +   K  + 
Sbjct: 205 EVSEPVKTQFGYHIIKVTDNHADA--TFDKSKADIKKSLAQEKTQDA 249


>gi|239780227|gb|ACS15392.1| PpiC-type peptidyl-prolyl cis-trans isomerase [uncultured bacterium
           FLS12]
          Length = 306

 Score = 94.3 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 83/250 (33%), Gaps = 19/250 (7%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            K   +       V G+  +  +  +            +  +  +       P       
Sbjct: 55  RKEAVQAMAKDHVVTGVLINQEVARRHMSIPPHELEAAFEAVAQQQDAKDKPPE----QG 110

Query: 216 WFEKYKDNYRAPE-YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
            +++ + +        R+              E + +++ A YE++K+++  PE+     
Sbjct: 111 GWDENQADAVKKNLEMRMKIDRLLDEVCRDVPEPTEEDVLACYEESKDRFAVPEMIHAAH 170

Query: 275 LV-------FPNQKEA----DEAFQSLKKGKKFIQLAEEQGKSL-SDISLGSFSKEYIPD 322
           +V         +++ A     +    + KG  F +LA        S   LG F +  +  
Sbjct: 171 IVKHVQDGNIMDRQAAYNEMKDIANEIDKGATFEELAARHSDCPDSGGDLGVFPRGQMV- 229

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
               D +F+L + G  + +    FG  IA +   +P    SF EV  ++         + 
Sbjct: 230 QEFEDVVFAL-EVGQVSGIFSSCFGLHIAKLYERRPRVDKSFDEVADEVRKACATELENT 288

Query: 383 KVKEDYKRLE 392
           ++      L+
Sbjct: 289 RIDAFVDELK 298


>gi|327479275|gb|AEA82585.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas stutzeri DSM
           4166]
          Length = 435

 Score = 94.3 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 114/372 (30%), Gaps = 76/372 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S      ++    I ++ G  V         L +++L+ L+S    
Sbjct: 36  DRVVAIVDNDVIMQSQLDQRIQEVRQTIEKR-GAEVPPNEV----LQQQVLERLISENLQ 90

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   +A       + N  + + F   LAR+G++ +   +   + +
Sbjct: 91  LQIGERSGVRISDEELNQAMATI----AQRNNMTPEQFREALARDGLSPETAREQIRREM 146

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             + V                       + R           V      S   +  +   
Sbjct: 147 IISRV----------------------RQRR-----------VAERIQVSEQEVQNFLAS 173

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                +  E   ++ IL  V E      I   E                           
Sbjct: 174 DLGKLQLSEEYHLANILIPVPEAADSATIQAAE--------------------------- 206

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
            + A +  + L+KG  F +LA  +     +L    +G      +P       +  LA  G
Sbjct: 207 -RMARDTHEQLQKGADFARLAVARSASENALEGGDMGWRKAAQLP-PPFDSLVRELA-VG 263

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFL 395
           +FT  +    G++I  V   +   T    EV    I  +    ++ ++ +   KRL E +
Sbjct: 264 EFTEPVRTPPGFIIVKVLEKRGGETQVRDEVHVRHILIKPSAIRSEDEARLLVKRLRERI 323

Query: 396 ALGTSMDEISRR 407
             G    E++R 
Sbjct: 324 LAGEDFAELARN 335


>gi|94984847|ref|YP_604211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           geothermalis DSM 11300]
 gi|94555128|gb|ABF45042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           geothermalis DSM 11300]
          Length = 345

 Score = 94.3 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 92/358 (25%), Gaps = 89/358 (24%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV-GLDKKILDNLVSGATL 99
           + V  VG +    + F  +++Q +  +    G     +            L        +
Sbjct: 57  TVVAQVGNETYTLADFDRAFRQAVARVLNAQGVPYTPDLLAEFAEARPDFLTQFARDRAV 116

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKM 158
            Q       +     +  ++A           FS D  F   L   G    E    +   
Sbjct: 117 YQLARRTT-QVKPADIDAQVAE------ARKGFSSDADFQQALQASGY---ENEAEFRAD 166

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L R  VV  ++  +                               +     +A++  ++ 
Sbjct: 167 LERQAVVQAYLDSI------------------------------KSRLTFGDALVQSFYN 196

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             +  +  P                                            V+ ++  
Sbjct: 197 LNRAAFNRPAQA----------------------------------------CVKHILVK 216

Query: 279 NQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
            Q EA    + L+ G  F QLA    ++ G +     LG  S       +     FS   
Sbjct: 217 TQAEAQGVLRDLQGGADFAQLAQQKSQDPGSAADGGDLGCLSPGETV-AAFDKVAFSAPL 275

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                 V+   +G+ +  V+    +      EV   I  Q+    A + +     RL 
Sbjct: 276 NQP--QVVQTEYGWHVLVVTKRSEAGVPPLSEVAPLIREQLARDAAQKYLDAQIARLN 331


>gi|239616790|ref|YP_002940112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kosmotoga olearia
           TBF 19.5.1]
 gi|239505621|gb|ACR79108.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kosmotoga olearia
           TBF 19.5.1]
          Length = 673

 Score = 94.3 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 72/597 (12%), Positives = 181/597 (30%), Gaps = 134/597 (22%)

Query: 4   IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS---------------TVVSVGR 48
            +RK  +  +     ++     + W ++  +   S  +                 ++   
Sbjct: 6   WMRK-IQVPIIWTIAILFAAGVIWWSVATYMSGKSRETGSTTPTNSARPEDAFAYLTKDG 64

Query: 49  QK-------VPFSSFINSWKQELGMISQKIGFVVNSERARSVGL-----DKKILDNLVSG 96
                    + +S + ++ +  L  +SQ+    ++     S G+        +L +L+  
Sbjct: 65  TPLEDPIYWISYSEYDDTVRDVLSSLSQR-NIQLDPYFKGSAGMSEIDVRYMVLLDLIDQ 123

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             L  + +   +      +   +             S + + +++ +   + + + +   
Sbjct: 124 KILIYYAKKHNIYPTEDEINTRVEEI-----VSKYTSDENYKAQIEQYYGSVEAFKEKVR 178

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
           K +  + +       +                                     +  L  +
Sbjct: 179 KSIFPSVLKEKVQNDVL---------------------------------KDVDQKLKTY 205

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           FE+ K                             DE++ +Y          E      ++
Sbjct: 206 FEENK-----------------------------DEIKNKY----------ERVEASHIL 226

Query: 277 FPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFS 331
             ++  A E    L  G   F   A E     +      SLGSF    +      D+ FS
Sbjct: 227 LTSEASALELKNELLNGAINFSDAASEFSIDRNSAVLGGSLGSFGHGQMVK-EFEDAAFS 285

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKR 390
            A  G+    +   +G+ +  V+    +   +F E+K   A +Q +    S++ K+ ++ 
Sbjct: 286 -ATPGEIVGPVETKYGFHLIKVA--TKTVFDTFDELKSSSAYDQFKNDYESDEFKKWFEN 342

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
            +     G  +++     KI +    + +    D   K+++   + E     V G   P+
Sbjct: 343 YKNNEKFGYVIND--EELKIYNEFKKVQNAGNTDEYLKKLSTTIFNESGGISVEGSYLPI 400

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS--------- 501
           +    ++    + +  ++ +      +KL E            +  +++S          
Sbjct: 401 AIFVQLSDEKLNNLKYELNDLKE--MKKLSETTPATILSLSNEEIEKKLSELNDSTDTKL 458

Query: 502 -----KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
                 A +L    SK G++   + + L       +++N        F Y+ +   F
Sbjct: 459 KDLYSDAKKLKEYQSKYGEDINSVNELLETKQKEFDELNSRFATAVKFLYNMMPYSF 515


>gi|292492134|ref|YP_003527573.1| SurA domain protein [Nitrosococcus halophilus Nc4]
 gi|291580729|gb|ADE15186.1| SurA domain protein [Nitrosococcus halophilus Nc4]
          Length = 425

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 59/435 (13%), Positives = 135/435 (31%), Gaps = 65/435 (14%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           ++ V  + W +     +      V  V  + V  S            +  K G  +  + 
Sbjct: 5   LVAVLAVFWSMGS-FGATILDRIVAVVNEEVVLESELEQMVHTVQEQLVAK-GTPLPPDY 62

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                L++++L+ LV      Q     G+      +   + R      +DN  +   F  
Sbjct: 63  M----LEQQVLERLVMQQLQLQLAARTGIRVGDETLNQALRRI----AEDNGLTLSQFRD 114

Query: 140 RLAREGINEKEYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFEN--RSVDYIV 196
            L ++G N   + ++  + L  + +        +  S   +D       +   + V Y  
Sbjct: 115 VLEQDGYNFPSFRENIRRELIISQLHKREVNDRVTVSEAEIDNFLTTQRKRGNQDVQY-Q 173

Query: 197 LNNRHVPAIADPSNAVLTQW----------------FEKYKDNYRAPEYK---------- 230
           L +  +      S   L                   F+K    Y   +            
Sbjct: 174 LGHVLIAVPEAASPEQLQAARAKGEQLLRQLREGMDFQKAALAYSDGQQALEGGNLGWRK 233

Query: 231 --RISYILFDVHEKEKKIEISNDE-------LQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
             ++  +  DV  K +  EIS          +    ++  E+           ++    +
Sbjct: 234 MGQLPTLFVDVVPKLQVGEISELIRSPSGFHIVKLLDRRGEEQQVVTQTHARHILLRTDE 293

Query: 282 EADEAFQSLK---------KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADS 328
                   L+         +G  F +LA+    ++  +L    LG  S   +      + 
Sbjct: 294 LTSNRDARLRLGQLRQRALQGDDFSELAQAHSDDKASALKGGDLGWISPGQMI-PRFEEV 352

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           + SL   G+ +      FG+ +  + N +    ++ +  +     ++R  K  E+++   
Sbjct: 353 MRSL-DPGEISKPFQTQFGWHVVQILNRR-QQNMTEEFNRNRARMEIRQRKIEEELENWL 410

Query: 389 KRLEEFLALGTSMDE 403
           ++L +   +   +D 
Sbjct: 411 RQLRDEAYVEYRLDS 425



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/371 (10%), Positives = 110/371 (29%), Gaps = 35/371 (9%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +    V+   V       L      R   E  +     +   +   ++   + +    + 
Sbjct: 63  MLEQQVLERLVMQQLQLQLAARTGIRVGDETLNQALRRIAEDNGLTLSQFRDVLEQDGY- 121

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
               ++R    + +        E   ++ +S  E+       +++        +  ++  
Sbjct: 122 -NFPSFRENIRRELIISQLHKREVNDRVTVSEAEIDNFLTTQRKRGNQDVQYQLGHVLIA 180

Query: 279 NQKEA------------DEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDV 323
             + A            ++  + L++G  F + A       ++L   +LG      +P  
Sbjct: 181 VPEAASPEQLQAARAKGEQLLRQLREGMDFQKAALAYSDGQQALEGGNLGWRKMGQLP-T 239

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD----IANQMRITK 379
              D +  L + G+ + +I    G+ I  + + +        +          +++   +
Sbjct: 240 LFVDVVPKL-QVGEISELIRSPSGFHIVKLLDRRGEEQQVVTQTHARHILLRTDELTSNR 298

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
            +        +L +    G    E+++               G    G+ +   P  E++
Sbjct: 299 DARL---RLGQLRQRALQGDDFSELAQAHSDDKASALKGGDLGWISPGQMI---PRFEEV 352

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           +  +    DP           G ++   +         +        + + +  K  EE+
Sbjct: 353 MRSL----DPGEISKPFQTQFGWHVVQILNRRQQNMTEEFN--RNRARMEIRQRKIEEEL 406

Query: 500 SSKANQLVLEY 510
            +   QL  E 
Sbjct: 407 ENWLRQLRDEA 417


>gi|322437244|ref|YP_004219456.1| SurA domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321164971|gb|ADW70676.1| SurA domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 377

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/372 (13%), Positives = 113/372 (30%), Gaps = 83/372 (22%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
            +  + +V    +  +     +  +LG   Q      ++E+A S  L   +L  L+    
Sbjct: 54  SADVMATVNGHAIMRADLDKVYNLQLGEAQQ---SQPSAEQADSQRL--GLLKQLIDEEI 108

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q    + L A +  V  ++A           ++ + F   L     +  +      + 
Sbjct: 109 VQQRATKMNLTATNEEVDAKLAEMKA------PYTEEQFDGLLRERHTSVDDIKRDLRRS 162

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L+   ++                                  + + +    S+A +T +F 
Sbjct: 163 LTMNKLLN---------------------------------KEINSKVTVSDADITSYFN 189

Query: 219 KYKDNYRAPE-YKRISYILF--DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++K  +   E    I+ IL       +   ++ S  +  A                    
Sbjct: 190 QHKSEFNNIETQYHIARILVTSSPAPQAGNLQGSKAQTDA-------------------- 229

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
               +K+       +  G+ F  LA    E+   S S   +GS ++  +    +  +  +
Sbjct: 230 --DAKKKILALKNRVDSGEDFGSLAMNFSEDPQTSASGGDMGSVAETQMKSNPIIFNSLA 287

Query: 332 LAKKGDFTP----VIHGS----FGYVIAHVSNIKPSFTVSFQE--VKKDIANQMRITKAS 381
             K G  T               GY I  + +  P+      E  V++ I   +   ++ 
Sbjct: 288 NLKPGQVTDIMPFPDPSDPKKVGGYAIFQLLSRDPAGQHDVSEPQVQQRIRQGLHDARSQ 347

Query: 382 EKVKEDYKRLEE 393
                 Y+ L +
Sbjct: 348 LLKGAYYEMLRD 359


>gi|325981462|ref|YP_004293864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
 gi|325530981|gb|ADZ25702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
          Length = 264

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 77/166 (46%), Gaps = 4/166 (2%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           ++   +     +  K  ++S+D L+ EY+  + +    E +    ++  N+ EA +   S
Sbjct: 98  RQAVLVRAFQADYIKHNQVSDDTLRKEYDVLRVQMGDKEYK-ARHILVENENEARDIIAS 156

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           LKKG  F ++AEE+         G    +S         ++++  L+K G     +  SF
Sbjct: 157 LKKGGNFAKIAEEKSIDDGSKENGGELNWSPPAAYVRPFSEALVKLSKGGMTEQPVQTSF 216

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           G+ +  + +I+P     F+EVK++I  ++   + +  V++   + +
Sbjct: 217 GWHVIQLMDIRPMEVPPFEEVKQNIQQRVLQREFATVVQDLRSKAK 262



 Score = 41.9 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 11/91 (12%)

Query: 27  IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD 86
           +WGL         S  V  V    +P S      K  +    Q               + 
Sbjct: 14  VWGLIAFSVQAQSSGVVAKVNGVAIPQSRLELMVKANVAQGQQ-----------DGPEMR 62

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           K + +NL++   L Q      L+ D   +  
Sbjct: 63  KALRENLIAEEILAQEATKKRLDQDPEVIAQ 93



 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 47/131 (35%), Gaps = 2/131 (1%)

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGY 546
           K++K      E  ++A  ++    K G NF  I +       +      ++ +    +  
Sbjct: 135 KEYKARHILVENENEARDIIASLKKGG-NFAKIAEEKSIDDGSKENGGELNWSPPAAYVR 193

Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
                +       +   P++    + V ++ + +   V   ++    + Q + +    +V
Sbjct: 194 PFSEALVKLSKGGMTEQPVQTSFGWHVIQLMDIRPMEVPPFEEVKQNIQQRVLQREFATV 253

Query: 607 IAYLKSQYSVT 617
           +  L+S+  V 
Sbjct: 254 VQDLRSKAKVE 264


>gi|331086426|ref|ZP_08335506.1| hypothetical protein HMPREF0987_01809 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406192|gb|EGG85715.1| hypothetical protein HMPREF0987_01809 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 246

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 6/162 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295
             + E  K + ++++E+ A YE+NK+++   E  + + ++  ++++     +S+  G+K 
Sbjct: 83  LAMRETLKDVTVTDEEVAAYYEENKQQFTKGETVSAKHILVDSEEKCTSVLESITSGEKA 142

Query: 296 FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F   A+E     S      LG F K  +       +    A+ G     +   FGY +  
Sbjct: 143 FEDAAKEASTCPSGARGGDLGEFGKGQMVKEFEEAA--FAAEIGHVVGPVKTQFGYHLIK 200

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           V     +    F EVK+ I   +   K +       + L+E 
Sbjct: 201 VEKKNEASVAVFDEVKEAIKRNLIQQKQNAAYNAKVQELKEK 242


>gi|325981517|ref|YP_004293919.1| SurA domain [Nitrosomonas sp. AL212]
 gi|325531036|gb|ADZ25757.1| SurA domain [Nitrosomonas sp. AL212]
          Length = 441

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/414 (11%), Positives = 130/414 (31%), Gaps = 63/414 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +  V  V    +       + K  +  + Q+ G  +         L++++L+++++    
Sbjct: 37  NHIVAVVNEDVITRHELDEAIKTAISRMQQQ-GMQIPDRHI----LEEQVLESVITKRIQ 91

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK-M 158
            Q  +++GL      +   I R      +DN+ +   F + L  +GI+  ++ +   + M
Sbjct: 92  IQHAQEVGLSVAETELDETINRI----AEDNQLTLPEFHTVLENDGISYNKFREEIREEM 147

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYF-------ENRSVDYIVLNNRHVPAIADPSNA 211
           +            +  +   +D   +          E R    ++L   ++ A      A
Sbjct: 148 IIARLKEREVKHQVNVTEGEVDNFLQTQEASAVGDDEYRLAHIMILVPENMTADQIQQRA 207

Query: 212 VLTQW----------FEKYKDNY-------------------RAPEYKRISYILFDVHEK 242
              +           F +    +                     P + +I   L      
Sbjct: 208 ERAEMALTRLREGAEFSQIVSEFSDAADAKNGGIIEWRPISQMGPAFAQILEALQPGDIT 267

Query: 243 EKKIEISNDELQAEYEKNKEKYFSP--EIRTVEQLVFPNQK---------EADEAFQSLK 291
                 +   +     +  ++  +   +      ++    +         +       L 
Sbjct: 268 SIVQSPNGFHIFKLLGRRAQETPTVIIDQTHARHILIKINELTSENDGKLKILALKDRLD 327

Query: 292 KGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           +G+ F ++A    E   + S   LG  S            + +L   G+ +  +   FG+
Sbjct: 328 RGESFEEVARLYSEDASASSGGDLGWLSPGDTV-PDFERVMNALL-PGEISDPVRSQFGW 385

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            +  V   + +  +S    ++     +R  KA   +++  ++L +   +   +D
Sbjct: 386 HLIQVMERR-TQDISLDRRRQTARQAIRTRKADVVIQDWLQQLRDQAYIEYRLD 438



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 71/202 (35%), Gaps = 18/202 (8%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277
           + +R    + +        E + ++ ++  E+    +  +      +   +  ++     
Sbjct: 137 NKFREEIREEMIIARLKEREVKHQVNVTEGEVDNFLQTQEASAVGDDEYRLAHIMILVPE 196

Query: 278 --------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI--PDVSLAD 327
                      + A+ A   L++G +F Q+  E   +    + G      I     + A 
Sbjct: 197 NMTADQIQQRAERAEMALTRLREGAEFSQIVSEFSDAADAKNGGIIEWRPISQMGPAFAQ 256

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS--FQEVKKD-IANQMRITKASEKV 384
            + +L + GD T ++    G+ I  +   +   T +    +     I  ++    +    
Sbjct: 257 ILEAL-QPGDITSIVQSPNGFHIFKLLGRRAQETPTVIIDQTHARHILIKINELTSENDG 315

Query: 385 KEDYKRLEEFLALGTSMDEISR 406
           K     L++ L  G S +E++R
Sbjct: 316 KLKILALKDRLDRGESFEEVAR 337


>gi|320334162|ref|YP_004170873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           maricopensis DSM 21211]
 gi|319755451|gb|ADV67208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           maricopensis DSM 21211]
          Length = 331

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/357 (11%), Positives = 95/357 (26%), Gaps = 86/357 (24%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV-GLDKKILDNLVSGATL 99
           + V  +G Q +  + F ++++Q +  +    G  ++++          +IL+ +     +
Sbjct: 41  TVVARIGTQTLTLADFESAYRQAVAQVVNAQGVPLSADVLPYFVQYRPEILEQVARQRAV 100

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q   + GL+ D  +V   I                                 D   +  
Sbjct: 101 LQLAANSGLKVDTAKVDQSI--------------------------------EDLRKEYP 128

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +  D      G    S   L Q+                   +      S++V+  ++  
Sbjct: 129 ADADYTDALEGSGYVSEAALRQSIA------DAQLYRAYLDTIRGKFKFSDSVVNGYYLS 182

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +K ++  P                                             + ++  +
Sbjct: 183 HKADFTRP----------------------------------------AEACAKHILLKD 202

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKK 335
              A      L KG+ F ++A E  +          LG  +           ++F     
Sbjct: 203 DATARTVAARLSKGEDFAKVAAEVSEDPGSKGQGGDLGCLAPGDTV-PEFDAAVFKGPLN 261

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                 +   FG  +  V+    +      E    I + +    A + +     +++
Sbjct: 262 --TVQTVKTQFGTHLVVVTKRTDAGLAPLAEAADQIRDTLANEAAQKYINAQLVKVK 316



 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 94/265 (35%), Gaps = 22/265 (8%)

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
           F + + +I  Q+   +A  ++  +     +   +  S++++ +     +     ++ +G 
Sbjct: 83  FVQYRPEILEQVARQRAVLQLAANSGLKVDTAKVDQSIEDLRKEYPADADYTDALEGSGY 142

Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
             +     +I   +  L+R +          + ++ +G Y+  +   + PA         
Sbjct: 143 VSEAALRQSIADAQ--LYRAYLDTIRGKFKFSDSVVNGYYLSHKADFTRPA--------- 191

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENK 542
              +   K +   ++ +++    V     +G++F  +   +     +  Q   +      
Sbjct: 192 ---EACAKHILLKDDATAR---TVAARLSKGEDFAKVAAEVSEDPGSKGQGGDLGCLAPG 245

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVF-KVTNSKVGPVQEKDKFISYLTQMMNKD 601
               +  + VF GP+  V+    + G   VV  K T++ + P+ E       +   +  +
Sbjct: 246 DTVPEFDAAVFKGPLNTVQTVKTQFGTHLVVVTKRTDAGLAPLAEA---ADQIRDTLANE 302

Query: 602 LLDSVIAYLKSQYSVTVHDNLIQRY 626
                I     +  V V  +L+   
Sbjct: 303 AAQKYINAQLVKVKVEVFKDLVTEA 327


>gi|307826208|ref|ZP_07656418.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter
           tundripaludum SV96]
 gi|307732742|gb|EFO03609.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter
           tundripaludum SV96]
          Length = 343

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 6/167 (3%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           K+      D+    K   +++ E++AEY+         E +    ++   + EA +    
Sbjct: 112 KKALLTQADLQNFIKANPVTDAEIKAEYDSKVAAEKGTEYK-ARHILVKTETEAKKLITE 170

Query: 290 LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           L KG  F +LA +         +   LG FS   +     ++++ +L K       +   
Sbjct: 171 LDKGADFAKLANKNSLDAKESQNGGDLGWFSAAQMV-APFSEAVAALEKGKYTKEPVKTQ 229

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           FG+ +    + +P      + VK+ +   ++  K  E ++   K+ +
Sbjct: 230 FGFHVILKEDSRPVTPPPLEAVKEQLTPFLQRKKVQEMIETLRKQAK 276


>gi|218779881|ref|YP_002431199.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761265|gb|ACL03731.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 327

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 17/163 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----------NQKEADEAFQSLKKG-K 294
             +  E Q  Y++N   +  P    V  ++              +  A +    +KKG +
Sbjct: 154 TPTEAEAQKYYDENPNDFVLPRALRVRHILIKKDAAKGVDGKTAKARAQQILARVKKGGE 213

Query: 295 KFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYV 349
            F  +A E            +G  S+  + +  L   + +    + G+    +    G+ 
Sbjct: 214 PFAIIAREASDGPEKDQGGDMGYVSEGALKNTELEPLEKVILKLQPGEIGNPVETDIGFH 273

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           I    + +P     F+ VK+ + + ++  K  E + +    L+
Sbjct: 274 IVKALDERPESITPFETVKERLISALQKKKMVEALNQLASELK 316


>gi|89100502|ref|ZP_01173363.1| YacD [Bacillus sp. NRRL B-14911]
 gi|89084768|gb|EAR63908.1| YacD [Bacillus sp. NRRL B-14911]
          Length = 296

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 80/202 (39%), Gaps = 15/202 (7%)

Query: 192 VDYIVLNNRHVPAIADPSNAVL-------TQWFEKY--KDNYRAPEYKRISYILFDVHEK 242
           +D  V+         + S   +          ++    +    +   ++I Y L      
Sbjct: 69  IDQKVIGAMAEKYDVEVSKDAVERELTLVKTMYQGNRLQQLDESKWKEQIKYSLLLEELL 128

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
            + + ++ +E++  Y++NK  +  P+   + Q+V   +KEA++  + L+ G  F  LA E
Sbjct: 129 TRDVVVTEEEMKDYYDQNKSLFQVPDSYHISQIVVKTKKEAEQTIKELENGSSFPVLAME 188

Query: 303 QGKSLSDISLGSFS-----KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +       + G  +     ++        D    L K+G+++  +    GY +  +    
Sbjct: 189 RSIDEFTANQGGETGFISEEDERFSQDFIDEAAKL-KEGEWSEPVEVEDGYAVILLHEHL 247

Query: 358 PSFTVSFQEVKKDIANQMRITK 379
                +F++VK  I  Q+ + +
Sbjct: 248 DGRNYAFKDVKNQIRRQVALEQ 269


>gi|206603171|gb|EDZ39651.1| Protein of unknown function [Leptospirillum sp. Group II '5-way
           CG']
          Length = 234

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 70/233 (30%), Gaps = 28/233 (12%)

Query: 1   MLEIIRKAS----RTWVAKIFL--VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS 54
           MLE IRK +    +     + L   +  V    WG S       G   V  +    +  +
Sbjct: 1   MLEWIRKVAVERPKVLGTLMILVGAIFVVSMGWWGFSAYKSGKPG--IVARINGTPLYAT 58

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            F   ++       + +   +  +    +     +L N++           + L      
Sbjct: 59  EFSRDYEIMKNNYQRLLNGALGKKILTELNFPGLVLRNMIFRQLWIDEANHLHLVVPDAV 118

Query: 115 VWGEIARSPLFHGKDNK-FSHDVFVSRLAREGINEKEYIDHYTKMLSRTD---VVGMFVG 170
           V  E++R P F   +   FS  ++   L     + K++     + L       +V     
Sbjct: 119 VVSEVSRIPFFQEGNPPAFSSKLYTQFLLETHQSAKDFEQSIREDLLVQRAQVLVRAIQT 178

Query: 171 GMRPSN----------------LLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
              P++                L  +  + F  +  +   + ++      ++ 
Sbjct: 179 PAAPTDEKTATSLDDWQKKRLALQEETLQSFQMQLENRSNVKIDQEAFKKLSK 231


>gi|122070665|sp|Q9I5U3|SURA_PSEAE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 417

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/408 (10%), Positives = 130/408 (31%), Gaps = 64/408 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S      ++    + ++ G  +  E      L +++L+ L+     
Sbjct: 18  DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 72

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G+      +   +        + N  S + F + L R+G++  +  +   + +
Sbjct: 73  QQIGDRSGIRISDEELNQAMGTI----AQRNGMSLEQFQTALTRDGLSYADAREQVRREM 128

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQA-------KRFYFENRSVDYIV-LNNRHVPAIADPSN 210
             + V        ++ S   +           +   E R  + ++ +       +   + 
Sbjct: 129 VISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASSDVIQAAA 188

Query: 211 AVLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
               + +++ K   ++                     ++ + +          + + +  
Sbjct: 189 RQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSLAVGDVT 248

Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
                     +    EK        +   V  ++            +K A + ++ ++ G
Sbjct: 249 EPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQKLYERIQSG 308

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F +LA+    + G +L+   L     E +        + +   +G+ +      FG+ 
Sbjct: 309 EDFGELAKSFSEDPGSALNGGDLNWIDPEALV-PEFRQ-VMNDTPQGELSKPFRSQFGWH 366

Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           I  V   +    +  F+E  +   + +R  K  E+++   +++ +   
Sbjct: 367 ILQVLGRRATDSSEKFRE--QQAVSVLRNRKYDEELQAWLRQIRDEAY 412



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 105/321 (32%), Gaps = 42/321 (13%)

Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGINEKE-YIDHYTKMLSRTDVVGM 167
               RV   +    +   + ++   +V  + L R   +  +        + L   ++   
Sbjct: 15  VPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVLTQQVLERLIIENIQQQ 74

Query: 168 F--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
                G+R S+  L+QA     +   +                ++A             R
Sbjct: 75  IGDRSGIRISDEELNQAMGTIAQRNGMSLEQFQTALTRDGLSYADA-------------R 121

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--- 282
               + +           ++I++S  E++     +  K    E   +  ++ P  +    
Sbjct: 122 EQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASS 181

Query: 283 ---------ADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIF 330
                    A E +Q LK+G  F QLA  +     +L    +G      +P       I 
Sbjct: 182 DVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQP-FDSMIG 240

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASE 382
           SLA  GD T  +    G++I  +   +    +   EV          +I ++    K ++
Sbjct: 241 SLA-VGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQ 299

Query: 383 KVKEDYKRLEEFLALGTSMDE 403
           K+ E  +  E+F  L  S  E
Sbjct: 300 KLYERIQSGEDFGELAKSFSE 320


>gi|254451174|ref|ZP_05064611.1| foldase protein PrsA [Octadecabacter antarcticus 238]
 gi|198265580|gb|EDY89850.1| foldase protein PrsA [Octadecabacter antarcticus 238]
          Length = 284

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 54/151 (35%), Gaps = 5/151 (3%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
              +   +LQA Y+                ++   ++EA E    +  G  F + A E+ 
Sbjct: 114 SAPVDEADLQATYDARFADIVPEAEYNASHILVETEEEAIEIGTMIDDGADFAETAVEKS 173

Query: 305 ---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                 S   LG F    +   +  +++ +L   G+ +  +   FG+ I  ++  + +  
Sbjct: 174 TGPSGPSGGDLGWFGLGMMV-PAFEEAVLTL-DAGEVSAPVQTQFGWHIVKLNETRETPL 231

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +   ++ ++   ++       +    +  +
Sbjct: 232 PTLDGLRVELTTGIQQQGLDALITTLTETAD 262


>gi|310817118|ref|YP_003965082.1| PPIc-type PPIase domain protein [Ketogulonicigenium vulgare Y25]
 gi|308755853|gb|ADO43782.1| PPIc-type PPIase domain protein [Ketogulonicigenium vulgare Y25]
          Length = 297

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 8/166 (4%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++++ LQA Y++  +        +   ++   Q+EAD     L  G+ F  +A+E    
Sbjct: 123 AVTDETLQAAYDRAFDGVTPGNEYSAAHILVATQEEADAVIARLNAGEDFATVAQELSLD 182

Query: 307 ----LSDISLGSFSKEYIPDVSLADSIFSLAKKGD---FTPVIHGSFGYVIAHVSNIKPS 359
                +   LG F+ E + +   A+++  L + G     +  I   FG+ I  V   +P 
Sbjct: 183 TGSGAAGGELGWFAPEMMVEP-FANAVVELGEAGQFDTLSAPIESQFGFHIITVHEARPQ 241

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
              +  E++ ++  Q+R    +E +       E      T+ D  +
Sbjct: 242 SLPTIAEIRTELEGQVRQDTLTEILNGLEAESEVSRTDLTTFDPTA 287


>gi|225552054|ref|ZP_03772994.1| basic membrane protein [Borrelia sp. SV1]
 gi|225371052|gb|EEH00482.1| basic membrane protein [Borrelia sp. SV1]
          Length = 336

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 116/366 (31%), Gaps = 80/366 (21%)

Query: 24  PFLIWGLSD--ALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
            FL W +     + S + ++ V  +     + +  + F +     + +  +  G  +   
Sbjct: 3   SFLFWVILGTVGISSFAQNTPVAIINLYKNEIITKTGFDSK----VDIFKKTQGRDLTDA 58

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
                   K++L  L++     Q     G++     V   I     F   +  F+ +   
Sbjct: 59  E------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN--FTDEQIK 108

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
             + ++G N  E +    + LS   +V                             +   
Sbjct: 109 QMIEKQGTNWGELLSSMKRSLSSQKLV-----------------------------LKQA 139

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
                 I  PS   + +++E  K  +  P+  R+S+I F   +K++   +          
Sbjct: 140 QPKFSEIKTPSEKEIIEYYEANKTKFVNPDISRVSHIFFSTKDKKRSDVLDQA------- 192

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
           KN            +++ F      +EA +     +     ++ +   L  +S G  + +
Sbjct: 193 KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFLSRGDQNAQ 237

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---------VKK 369
            +        +F+   KGD +  I    G+ I  V+       +   +         VK 
Sbjct: 238 NLLGADFVKEVFNF-NKGDISSPIASKEGFHIVKVTEKYAQRFLGLNDKVSPTADLIVKD 296

Query: 370 DIANQM 375
            I N M
Sbjct: 297 AIRNNM 302


>gi|42521667|ref|NP_967047.1| parvulin-like peptidyl-prolyl isomerase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574197|emb|CAE77701.1| Parvulin-like peptidyl-prolyl isomerase [Bdellovibrio bacteriovorus
           HD100]
          Length = 322

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 10/172 (5%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
             +R      +          EK    + +E++  YE NK++Y   E   + Q+V     
Sbjct: 132 SEWREELRYSLVEREVFKKINEKVKAPTEEEIKRYYEDNKDRYKRKERVFLRQIVVDEDA 191

Query: 282 EADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           +AD     LK G  F +LA +     ++     +G   K  +      D +F     G  
Sbjct: 192 KADAIKVDLKTG-DFAELARKYSITPEAKQGGVVGWIEKGTV---DYFDPLF---NVGSG 244

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
              I   FG  +  V    P+ T+S +EVK  I   +R  +   +       
Sbjct: 245 VQTIKSPFGIHLIRVEKKAPASTLSLEEVKPQIIRALRAQREQAEYVAWLDA 296


>gi|302185941|ref|ZP_07262614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae 642]
          Length = 440

 Score = 93.9 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/423 (11%), Positives = 133/423 (31%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 31  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK-M 158
            Q  E  G+      +   I        + N  S + F + LA +G++  +  +   + M
Sbjct: 86  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW- 216
           +            ++ S   +         + +  +   L N  +      S+  +    
Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDMGKAQLSEEFHLANILIATPDSASSEAIQAAA 201

Query: 217 ------FEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
                 +++ K   ++                     ++ + +     +    + + +  
Sbjct: 202 AKAKGIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPVGDVT 261

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            ++ A + +  ++
Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEAETKRLAQKIYDRIE 321

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F +LA+    + G +L+   L       +        + S   +G+ +      +G
Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMSETPQGELSKPFQTQYG 379

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + ++  A N +R  K  E+++   +++ +   +   +   ++
Sbjct: 380 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437

Query: 407 REK 409
             +
Sbjct: 438 AAQ 440


>gi|254251452|ref|ZP_04944770.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
 gi|124894061|gb|EAY67941.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
          Length = 454

 Score = 93.9 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 50/410 (12%), Positives = 124/410 (30%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 42  DEVVAVVNNDVITGRELDQRVSLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERIQ 96

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D   V   + R      + N  + D + +RL  +G+    + +     L
Sbjct: 97  VQKAKDDGIRIDDATVQATLQRL----AQANGMTLDQYRARLEAQGVPWNIFTNDARTEL 152

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDYIVL--------NNRHVPAI 205
             + +    V   +  S+  +             + + + +  +            + A 
Sbjct: 153 MLSKLREREVDSKITVSDAEVANYIASQRGPNAAQQQDLRFQHIFIKAPTNAPQTEIEAA 212

Query: 206 ADPSNAVLTQWF-------------EKYKDN------YRA-----PEYKRISYILFDVHE 241
              + A+L Q               E           +++     P+  + +  L     
Sbjct: 213 QKKAEALLQQAMSGADFEKLARNNSEANDAKKGGDLGFKSPGALPPDVVQAASKLRPGQV 272

Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286
               I + +  E+    ++   +  +          V  ++            ++E  + 
Sbjct: 273 NPTLIRVPDGFEIVRLVDRRPSQGATAAAPKIVQTHVRHILIRVGEGKSEGQARQELLDI 332

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ SL + G  +  + 
Sbjct: 333 RKQIEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNSL-QDGQISQPVR 390

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V + + +   S Q+        +   KA +   +  + L +
Sbjct: 391 TEYGYHLIQVLDRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 439


>gi|254883229|ref|ZP_05255939.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_3_47FAA]
 gi|319642604|ref|ZP_07997250.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
 gi|254836022|gb|EET16331.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_3_47FAA]
 gi|317385692|gb|EFV66625.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
          Length = 710

 Score = 93.9 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 95/720 (13%), Positives = 206/720 (28%), Gaps = 124/720 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  + + +    F+       L    G   V  V  + +    +     
Sbjct: 4   LQTIR--SKGPLLVVVIGLALFAFIAGDAWKVLQPHQGKQDVGEVNGKTLTAQEYQKMVD 61

Query: 62  QELGMISQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI- 119
           +   +I    G   +N ++     +  ++  + V+   +      +GL      V   I 
Sbjct: 62  EYTEVIKLTQGVSALNDDQLTQ--VKDQVWQSYVNNQLIAAEAAKLGLTVSKAEVQAIIE 119

Query: 120 -------ARSPLFHGKDNKFSHDVFVSR------LAREGINEKEYIDHYT---------- 156
                   ++P  + +   F  D+          L    +   +Y+++Y           
Sbjct: 120 EGTNPLLMQTPFRNPQTGAFDKDMLKKFLVDYAHLDASKM-PAQYVEYYQKMGAFWNFIE 178

Query: 157 ----KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-------- 204
               +         +    +  + +  + A     E   V    +    +          
Sbjct: 179 KTLIQSTLAEKYQNLIAKSLISNPVAAEDAFTSRTEQSDVLLAAIPYSSISDSTITVSNS 238

Query: 205 ---------------------------IADPSNA-------VLTQWFE-----KYKDNYR 225
                                      +  PS          +T++          + + 
Sbjct: 239 EIKDLYNKKKSSFEQPVETRNIKYIDVLVTPSEEDRKEVLNEVTEYANQLGTAADMNTFI 298

Query: 226 APE-------YKRISYILFDVHEKEKKIEISNDELQA-EYEKNKEKY---------FSPE 268
                        I+  ++      +   ++ +E+    Y +  + Y          +P+
Sbjct: 299 RSTGSVVPFSEIAINKTVYPNDVVARLDSVTINEVYGPYYNQADDSYNAFKIIAKQTAPD 358

Query: 269 IRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIP 321
                Q+    +  A      D  F +LK G  F  +A++ G++     L + + +    
Sbjct: 359 SIQYRQIQVYAEDAAKTATLADSIFNALKDGADFADIAKKYGQTGEATWLTARNYEGAAL 418

Query: 322 DVSLADSIFSL--AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           D   A  I +L  +   + + +  G    VI  V + K         V   I   +  +K
Sbjct: 419 DADNAKYINTLINSNVKELSNLQIGQAN-VILQVLDKKAMKDKYKVAV---IKRPVEFSK 474

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
             E   + Y    +F+A  T+MD+I    +     L  ++ A        V  +    + 
Sbjct: 475 --ETYNKAYNDFSQFVAQNTTMDKIVANAEESGYRL--LERADFRSAEHRVGGVKGTREA 530

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           L  +F   +           +   M V +++  PA  R +  V   +K +    K AE++
Sbjct: 531 LKWIFAAKEGEVSPLYECGENDHLMVVALEKINPAGYRNINLVADMLKAEIIKDKKAEKL 590

Query: 500 SS--KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
            +  K    + +         D  K+   +      ++         G   I        
Sbjct: 591 IAEMKGANSIDQVKNMANAVSDSVKH--ITFSAPAYVSVTRASEPALGAYAIKA-----E 643

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                 PI+      + +V N +    +   K        M      S I  L  +  V 
Sbjct: 644 VNKLTGPIKGNAGVYMIQVYNKEKSAEEFDAKNEENNLSNMAGRYASSFINDLYKKAEVK 703


>gi|254447632|ref|ZP_05061098.1| chaperone SurA [gamma proteobacterium HTCC5015]
 gi|198262975|gb|EDY87254.1| chaperone SurA [gamma proteobacterium HTCC5015]
          Length = 442

 Score = 93.9 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 70/494 (14%), Positives = 156/494 (31%), Gaps = 94/494 (19%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           +  +   +L + FL             +     V    +     ++   +    I    G
Sbjct: 1   MMTMIARLLILFFLFATPLAQAEPQVLARIAAVVDTDIILEQEMLDELSRVKARIQAS-G 59

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L +++L++L+      Q  + +G+  D   +  ++ R       +N  
Sbjct: 60  QTPPPDEI----LKRQVLEHLIVKEVQMQAADRVGINVDDTFLNEQLQRIAS----ENGM 111

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           S   F +++  EG++  EY +   + +    +                         R+V
Sbjct: 112 SLAQFKAKIESEGMDYVEYREMLREEMKIQQLR-----------------------QRTV 148

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                           S   +  +  +      + EY+    ++                
Sbjct: 149 Y----------DRVVVSEQEVDDYLAQNPVGSESVEYQLGHILVGTPEA----------- 187

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSD 309
                        +PE           +KEAD  ++ +K+G +F QLA        +L  
Sbjct: 188 ------------ATPEQVD------TARKEADNLYEQIKQGARFSQLALSHSDGQRALDG 229

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG   +  +P +   ++I SL +KG  +  I    G+ +  +  ++       Q+V+ 
Sbjct: 230 GDLGWLPQGRVPSL-FLEAIESL-QKGQVSRPIRSPSGFHLVQLKGVRGDERRVIQQVRA 287

Query: 370 DIA-----NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
                     +   +A +K+ E  +R+   +    S  E+++   I           G  
Sbjct: 288 RHILLTPNAVLSDEQARQKIAELRRRI---VEADESFAELAKAHSIDG----SAAQGGDL 340

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
                   +P   Q++  +     PL+        D  +  V++ E     D   E    
Sbjct: 341 GWAAPREYVPAFRQVVETL-----PLNTLSEPFRSDFGWHIVEVLERR-QYDETDEYRRG 394

Query: 485 DVKKDWKTVKTAEE 498
             +++ + +K +EE
Sbjct: 395 MARQELRKMKASEE 408


>gi|253699826|ref|YP_003021015.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
 gi|251774676|gb|ACT17257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
          Length = 325

 Score = 93.9 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 113/368 (30%), Gaps = 78/368 (21%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
           +G      V  + + +     + ++ L    +     ++ +  + V  D+  LD  V+  
Sbjct: 33  NGLQIAARVNDRPIYYHQIKANVERTLAKYKRFGASKISDDVKKQVQKDE--LDRQVNME 90

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
            L Q  E +  E D  +    +       G D                  ++       +
Sbjct: 91  LLVQAGEKLK-ETDLEKKMEALLNM---KGPDGSPRVKK-----------DESREKEMRE 135

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            L R  +                     Y   R +  + +               L +++
Sbjct: 136 QLRRNLLAES------------------YLVLRGIQDVRVP-----------EEELKRFY 166

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +     +  PE  ++S+I+  V +K    E++    +                     + 
Sbjct: 167 KDNSAKFAVPEAVKVSHIMIAVDKKATPQEVAKANAK---------------------IV 205

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
             ++E       L+  K F +LA+E      +     LG  + +++P      + F L K
Sbjct: 206 KVREE------LLQGKKSFEELAKEHSSGDSAAKGGDLGYINPQFMP-PEFDKAAFQL-K 257

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G+ + V+   FG+ +    + KP     F EVK  +   +       K  E    L   
Sbjct: 258 SGEVSDVVKTKFGFHLIKAFDKKPGRIQEFSEVKVLLEKFLLNQYQERKRAEIAMELRRD 317

Query: 395 LALGTSMD 402
             +  S+ 
Sbjct: 318 ARIEVSLK 325


>gi|93278583|pdb|1ZK6|A Chain A, Nmr Solution Structure Of B. Subtilis Prsa Ppiase
          Length = 93

 Score = 93.9 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
                 ++  ++K A+E  + LKKG+KF  LA+E     S      LG F+KE   D + 
Sbjct: 4   KIRASHILVADKKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETF 63

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           + + F L K G+ +  +   +GY I   + 
Sbjct: 64  SKAAFKL-KTGEVSDPVKTQYGYHIIKKTE 92


>gi|303256196|ref|ZP_07342212.1| peptidyl-prolyl cis-trans isomerase SurA [Burkholderiales bacterium
           1_1_47]
 gi|331001252|ref|ZP_08324878.1| SurA protein [Parasutterella excrementihominis YIT 11859]
 gi|302860925|gb|EFL84000.1| peptidyl-prolyl cis-trans isomerase SurA [Burkholderiales bacterium
           1_1_47]
 gi|329568979|gb|EGG50775.1| SurA protein [Parasutterella excrementihominis YIT 11859]
          Length = 453

 Score = 93.9 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/411 (12%), Positives = 116/411 (28%), Gaps = 79/411 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    +          Q    + ++     N        L  + LD ++    +
Sbjct: 48  DRIAAVVNHDVITEIQLQQRIHQVATNLRRR-----NIPLPPMDNLRDQTLDRMILERII 102

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +Q   D G+  D   + G I +       +N  +      +LA +GI+   +       L
Sbjct: 103 EQKARDTGIRIDDNMLNGAIEQI----ATNNGLTVPQLEKKLAADGISVPSFKSEIRSEL 158

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQA----------------------------KRFYFENR 190
               +        ++     +DQ                                    R
Sbjct: 159 LTQRLRERDVDDKIQIPESEIDQYLKDQSGPGKRMEYRLSRIVISFPENPTKAEVEAAQR 218

Query: 191 SVDYIV------LNNRHVPAIADPSNAVLT-----------------QWFEKYKDNYRAP 227
           +    +       +   + A    +   +                  Q  + +K     P
Sbjct: 219 TASRALEQAQRGADFSQLAAKYSVTPEAMEGGVMGWVPAGKLPPFVVQALQNHKAGDIIP 278

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKN---KEKYFSPEIRTVEQLVFPNQKEAD 284
                S+ +  +       E +   ++  + ++   +    +PE   +++L        +
Sbjct: 279 LQAGNSFQILKLTGVRDPGEQAQQGVRQTHVRHIMMRPSNVTPEKVVIQRL--------N 330

Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           E    L KG   F  LA       S      LG      +P   +   +  L+  G+ + 
Sbjct: 331 EIKSRLDKGDGDFQTLARLHSADPSGTRGGDLGWLYPGDVP-PEMEQQLDKLS-VGEISE 388

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            I   +G+ I  V + +    ++ +  ++     +R  K  + V +  +RL
Sbjct: 389 PIRTPYGWHIFQVLDRRTKSGIN-ERQREQAREALREQKLGDAVLDWERRL 438


>gi|229073881|ref|ZP_04206965.1| Foldase protein prsA 1 [Bacillus cereus F65185]
 gi|228709250|gb|EEL61340.1| Foldase protein prsA 1 [Bacillus cereus F65185]
          Length = 286

 Score = 93.9 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 86/235 (36%), Gaps = 25/235 (10%)

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY--KDNYRAPEYKRISYILFDV 239
            ++   E   +D   +++       D     +   F+ Y  + N R  +  +        
Sbjct: 61  LQQVMLEKILLDKYKVSDDETKKKVDELKKEMGDSFKSYLTQKNVRNEDELKDKLKTQMA 120

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            EK  K  I+  E++  Y+          I  V  ++  ++K A E  + +  G+ F  L
Sbjct: 121 FEKAIKASITEKEIKDYYK---------PILKVSHILVKDEKMAKEIKEKINNGEDFTTL 171

Query: 300 AEEQGKSLS----DISLGSFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           A+E  +          LG  +   +   D    ++ + L + G  +  I  SFGY I  +
Sbjct: 172 AKEHSEDPGSKEKGGELGELNAFQMDRMDPKFKEATYKL-EAGQVSEPIKSSFGYHIIKM 230

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKA-----SEKVKEDYKRLEEFLALGTSMDE 403
           +  K     +F + K++I  ++   +       +K  +D  +  +       + +
Sbjct: 231 TEKKE--LKTFNQEKENINKELEAKRLTDQQWQQKFFKDLFKQADIKITDKDLKD 283


>gi|261855875|ref|YP_003263158.1| SurA domain protein [Halothiobacillus neapolitanus c2]
 gi|261836344|gb|ACX96111.1| SurA domain protein [Halothiobacillus neapolitanus c2]
          Length = 465

 Score = 93.5 bits (231), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 62/478 (12%), Positives = 150/478 (31%), Gaps = 88/478 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V +  +      +  +Q    I+ +    ++    +   L++++LD +++    
Sbjct: 53  DRIVAVVNQSVITQRQLNDRIQQVSSQINIQ---ALSPSDFKQ--LEERVLDRMITEEVE 107

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG+  D  R+   +                       R G++            
Sbjct: 108 LQRAKQIGITVDEQRLDSALDGIA------------------QRNGMS------------ 137

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
               +           N   D  ++       +    L  R V    D ++  + ++ ++
Sbjct: 138 -LDQLQQAVTRQGEDWNAYRDNIRK------QIIIDELKRREVYERVDITDRDIDEYLKQ 190

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           Y           ++ IL  V E     ++ N                             
Sbjct: 191 YMGADTDTTEYHLAQILISVPENATPSQVENA---------------------------- 222

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +K AD+   +LK G+ F +++ E+  +        LG      IP +   D++ SL K G
Sbjct: 223 KKRADDVMAALKAGQDFAKVSAERSDAPDATKGGDLGWRDMSRIPGL-FTDTVKSL-KTG 280

Query: 337 DFTPVIHGSFGYVIAHVS---NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-E 392
           + + +I    G+ I  +          T   +   + +  Q+   + +   K   ++L +
Sbjct: 281 EISGLIRSPNGFHILKLLGERKRTAGNTQLTEYEAEHVLIQVNGKRDATAAKAQAEKLRQ 340

Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
           E ++   +  EI+ +              G       V          F    +  P+ K
Sbjct: 341 EIISGKATFAEIASKYSDDKGSAQQGGLLGWVNPSDMVPE--------FATMLEQTPVGK 392

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
              V      + ++++ ++   +    +++    ++     +  E++ +   +L  E 
Sbjct: 393 ISPVFQTQFGFHFLEVLKTREVQVPT-DKLRAQARQAIGQRRADEDLVNYIRRLRAEA 449


>gi|192358925|ref|YP_001981367.1| peptidyl-prolyl cis-trans isomerase SurA [Cellvibrio japonicus
           Ueda107]
 gi|190685090|gb|ACE82768.1| peptidyl-prolyl cis-trans isomerase SurA [Cellvibrio japonicus
           Ueda107]
          Length = 437

 Score = 93.5 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 50/391 (12%), Positives = 118/391 (30%), Gaps = 58/391 (14%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
             +   +    I +++           V L+K+IL+ L+         +   +  D   +
Sbjct: 50  LESELNERKASIMERLQGQYQQLPPEDV-LNKQILEQLIVERIELGLAKRYDISIDEAEI 108

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRP 174
              IAR      + N+ S     + L R+G++     +   K L+   +    V   ++ 
Sbjct: 109 DQAIARI----AQKNQVSAAALEADLKRQGLDMSGLREQLRKDLTINQLQQGVVNSRIKI 164

Query: 175 SNLLLDQAKRFYFENRSVD--------YIVLNNRHVPAIADPSNAVLTQWFEKYK--DNY 224
           S   +D          +           I +++     + + +       ++K +   ++
Sbjct: 165 SEQDIDNFLASSDGKYATSPDYHIGHILISVSSSADAEMVEQAENQANDIYKKLQGGADF 224

Query: 225 -------------------------RAPEYKRISYILFDVHEKEKKIEISND-ELQAEYE 258
                                    + PE      +     +  K         +    E
Sbjct: 225 AQMAISYSKDQAALQGGDIGWRKLAQLPELFGNEMMKLSPGQVSKPFRSGAGFHILKNIE 284

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKS--- 306
           +        E      ++    +  D+           + + KG+ F +LA E  +    
Sbjct: 285 QRGGGAQMVEQTHARHILVKTSEIMDDRQAREKLLGLRERILKGEDFAKLARENSEDTGS 344

Query: 307 -LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
            LS   LG  +       +  +++ +    GD +      FG+ I  V   + +      
Sbjct: 345 MLSGGDLGWSTPGMFV-PAFEEAM-AQTGIGDISRPFKSQFGWHILQVLERRQTDMSDRM 402

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           + +   AN +R  +  E+ +    ++ E   
Sbjct: 403 K-RNQAANVLRSRRFDEEFQLWLTQIREEAY 432


>gi|118474611|ref|YP_891704.1| foldase protein PrsA [Campylobacter fetus subsp. fetus 82-40]
 gi|118413837|gb|ABK82257.1| foldase protein PrsA [Campylobacter fetus subsp. fetus 82-40]
          Length = 269

 Score = 93.5 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 11/164 (6%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------ 292
           + ++   I++   + +  YE+NK+K+  P     + ++   +KEA +  +SL        
Sbjct: 99  MKKQFDAIKVDEKKAKDFYEQNKDKFVVPAQAKAKHILVETEKEAADIIKSLNGLKGAAL 158

Query: 293 GKKFIQLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            KKF ++A+E+      +++   LG F +  +   S + + F L K       +   FGY
Sbjct: 159 DKKFSEIAKEKSIDKSSAVNGGELGWFGESQMV-ASFSKAAFGLKKGEITNKPVKSEFGY 217

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +    ++K    V F + K +I NQM+  +    +++    L+
Sbjct: 218 HVILKEDMKDKSAVGFDKAKANIENQMKSEEFRTVMQKKVSDLK 261


>gi|241759093|ref|ZP_04757204.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114]
 gi|241320695|gb|EER56948.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114]
          Length = 329

 Score = 93.5 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/356 (8%), Positives = 97/356 (27%), Gaps = 90/356 (25%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                  V  + +       +  Q    + +         +  +  L +++L  +++ + 
Sbjct: 52  SDGIAAVVDNEVITHRQVAQAVAQARQTMPK-------GTQMDANELRQQVLAQMINQSL 104

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  +   ++A    +   IA +P                                 + 
Sbjct: 105 ILQAGKRRNIQATDSEIEAVIAHNPNIKNPS-----------------------AAVRQD 141

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           ++ + +V                                  + +   +  S++ + ++ E
Sbjct: 142 IADSIIVEKVRQ-----------------------------QAIMQNSRVSDSEVARYIE 172

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + K                        + +   +   +Y        +            
Sbjct: 173 QAKQQ---------------------GVTLPEADPVRQYHAQHILIKADNDNAA----VG 207

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
            +    + +   + G  F  LA +  +  S      LG F+   +      +++  L K 
Sbjct: 208 AESTIRKIYSQARSGADFGGLARQYSQDSSAGNGGDLGWFADGMMV-APFEEAVHKL-KP 265

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G  +  +   FG+ I  +++++ + T   +  +  +   +   KA +      + L
Sbjct: 266 GQISAPVRTQFGWHIIKLNDVREAGTPE-ERQQNAVRQYLSQQKAQQATTNLLREL 320


>gi|15837440|ref|NP_298128.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c]
 gi|81788857|sp|Q9PF40|SURA_XYLFA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|9105742|gb|AAF83648.1|AE003923_6 peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c]
          Length = 464

 Score = 93.5 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 49/429 (11%), Positives = 120/429 (27%), Gaps = 65/429 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S    +            G +   E      L +++L+ L+     
Sbjct: 34  DRIVAVVDDNVVLKSELDRAIHNVKSQYVGHEGQLPPDEV-----LQRQVLERLILIKLQ 88

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +  G+      +   I+       ++NK S D    +L  EGI+  E+       +
Sbjct: 89  VARAQTNGIRVSDDELNQAISSI----AENNKTSVDGLRQKLVAEGISFPEFRQSVRDEI 144

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQA-------KRFYFENRSV--------DYIVLNNRHVP 203
           +   +   F    +  S   +D A        +++ ++  V          I +  + + 
Sbjct: 145 TVHHLRQGFAQSRIVVSEGEVDTALAQASSGAQYHLQHILVAVPDGATSQQIAIAQKKID 204

Query: 204 AIADPSNAVLTQW------FEKYKDNYRA-----------PEYKRISYILFDVHEKEKKI 246
            I    +     +      +    +   +           PE            +    +
Sbjct: 205 GIKSVIDKGELAFSAAAVRYSDSPNALESGDLGWRSLDEIPEAFAQMVQTMKPGQIVGPL 264

Query: 247 EISND-------ELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSL 290
             ++        E++                    ++            + + D     +
Sbjct: 265 RGTSGFQLLKLVEVRDSAAAAAGPRQMATEYHARHILVRITEKQKEAEAKAKIDTLRARI 324

Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F  +A E  +  +       LG F  +        + + +LA  G+ +     + 
Sbjct: 325 AGGADFQTVARESSEDANNSNQGGDLGWFPSDAF-GADFGNHVKALA-DGNVSEPFRSAA 382

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ I      + +   + +  +  I + +   K  E  +   + L     +   ++E + 
Sbjct: 383 GWHIVQRLGTRQTDV-TRENQRAQIRDTIGQRKLEESYERFLRELRSEAYVSLQIEEPAD 441

Query: 407 REKIVSIDL 415
             +  S  +
Sbjct: 442 DHQTPSAAV 450


>gi|218896099|ref|YP_002444510.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus G9842]
 gi|228899723|ref|ZP_04063971.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222]
 gi|228906786|ref|ZP_04070655.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200]
 gi|228964109|ref|ZP_04125234.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218541193|gb|ACK93587.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus G9842]
 gi|228795596|gb|EEM43078.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228852790|gb|EEM97575.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200]
 gi|228859905|gb|EEN04317.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222]
          Length = 289

 Score = 93.5 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 90/246 (36%), Gaps = 39/246 (15%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I ++E+ D       +  +  M +  +          K +  E++ VD            
Sbjct: 35  ITKEEFYDQMKTQAGKQVLNNMVMEKVL--------IKNYKVEDKDVDKKF--------- 77

Query: 206 ADPSNAVLTQWFEK----YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
               + +  Q+ ++     K      E  + S       EK  +  I++ +++A++E  K
Sbjct: 78  ----DEMKKQYGDQFDTLMKQQGIKEETIKNSVRAQLAQEKAVEQSITDKDVKAKFEDYK 133

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317
           ++           ++  +++ A +    L +GK F +LA++  +          LG F  
Sbjct: 134 KEI------KASHILVKDEETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGP 187

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             +      ++   L KK + +  +   FGY I  V++       +F + K DI   +  
Sbjct: 188 GKMVK-EFEEAAQKL-KKDEVSEPVKTQFGYHIIKVTDNHADA--TFDKSKADIKKSLAQ 243

Query: 378 TKASEK 383
            K  + 
Sbjct: 244 EKTQDA 249


>gi|53805075|ref|YP_113118.1| peptidyl-prolyl cis-trans isomerase SurA [Methylococcus capsulatus
           str. Bath]
 gi|81682783|sp|Q60B78|SURA_METCA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|53758836|gb|AAU93127.1| peptidyl-prolyl cis-trans isomerase SurA [Methylococcus capsulatus
           str. Bath]
          Length = 454

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/417 (12%), Positives = 138/417 (33%), Gaps = 67/417 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S  +    +    +       +  +      L +++L+ ++     
Sbjct: 31  DRIVAVVDDGVILESELVRKVDEIKRSLRAS-RASLPPDSV----LVRQVLERMIVDKIQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH----- 154
            Q  E +G++ D   +   +++      + N  + D F   LAREGI+  +++D      
Sbjct: 86  IQMAEKMGIQVDDDTLRMAVSQI----AQRNNLTPDQFRRSLAREGIDYGDFLDQVRSEI 141

Query: 155 ----YTKMLSRTDV------VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
                        +      V  ++     S  + D+  R             +   V  
Sbjct: 142 AMGRLRASQINNQIKISDREVEHYLEAQGGSGAVADREYRLGH-ILIATPREASPDEVKK 200

Query: 205 IADPSNAVLT------QWFEK---YKDNYRAPEYKRISYILFD--VHEKEKKI------E 247
             + ++ V+        + +    Y D+ +A E   + +           + +      E
Sbjct: 201 ARERADRVVKELKAGLDFKDASIRYSDDPQALEGGDLGWRKLSEIPSHIAEVVGGMKDGE 260

Query: 248 ISNDELQ----AEYEKNKEKYFSPEIR----TVEQLVFP-----NQKEADEAFQSLK--- 291
           +S+  ++        K        E +     V  ++       + ++A     +LK   
Sbjct: 261 VSDP-IRSPGGYHIVKMLAMRGVGEAKLTKTHVRHILIRPNEVLSDEDAKNKLLALKTRI 319

Query: 292 -KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F +LA     ++G ++    LG      +      +++ +L +    +  +   F
Sbjct: 320 ENGDDFAELARGHSDDKGSAIKGGDLGWVKPGALV-PPFEEAMNALDEN-QLSDPVQTQF 377

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
           G+ +  V   + S   + + +K    +++   K  E+ +   +++ +   +   +DE
Sbjct: 378 GWHLIQVLERQESSDTN-EVLKNRARDELFKRKVDEETELWLRKIRDEAYVEIRLDE 433



 Score = 66.9 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 71/249 (28%), Gaps = 23/249 (9%)

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR-TVEQLVFPNQK 281
           ++       I+       +   +I+IS+ E++   E         +    +  ++    +
Sbjct: 132 DFLDQVRSEIAMGRLRASQINNQIKISDREVEHYLEAQGGSGAVADREYRLGHILIATPR 191

Query: 282 EA------------DEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLA 326
           EA            D   + LK G  F   +    +  ++L    LG      IP     
Sbjct: 192 EASPDEVKKARERADRVVKELKAGLDFKDASIRYSDDPQALEGGDLGWRKLSEIPSHIAE 251

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI---TKASEK 383
             +    K G+ +  I    GY I  +  ++          K  + + +       + E 
Sbjct: 252 --VVGGMKDGEVSDPIRSPGGYHIVKMLAMRGVGEAKLT--KTHVRHILIRPNEVLSDED 307

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
            K     L+  +  G    E++R               G    G  V         L   
Sbjct: 308 AKNKLLALKTRIENGDDFAELARGHSDDKGSAIKGGDLGWVKPGALVPPFEEAMNALDEN 367

Query: 444 FGKDDPLSK 452
              D   ++
Sbjct: 368 QLSDPVQTQ 376


>gi|212694486|ref|ZP_03302614.1| hypothetical protein BACDOR_04014 [Bacteroides dorei DSM 17855]
 gi|237711177|ref|ZP_04541658.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
 gi|237727542|ref|ZP_04558023.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D4]
 gi|265750767|ref|ZP_06086830.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
 gi|212662987|gb|EEB23561.1| hypothetical protein BACDOR_04014 [Bacteroides dorei DSM 17855]
 gi|229434398|gb|EEO44475.1| peptidyl-prolyl cis-trans isomerase [Bacteroides dorei 5_1_36/D4]
 gi|229455021|gb|EEO60742.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
 gi|263237663|gb|EEZ23113.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
          Length = 710

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 95/721 (13%), Positives = 201/721 (27%), Gaps = 126/721 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  + + +    F+       L    G   V  V  + +    +     
Sbjct: 4   LQTIR--SKGPLLVVVIGLALFAFIAGDAWKVLQPHQGKQDVGEVNGKTLTAQEYQKMVD 61

Query: 62  QELGMISQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI- 119
           +   +I    G   +N ++     +  ++  + V+   +      +GL      V   I 
Sbjct: 62  EYTEVIKLTQGVSALNDDQLTQ--VKDQVWQSYVNNQLIAAEAAKLGLTVSKAEVQAIIE 119

Query: 120 -------ARSPLFHGKDNKFSHDVFVSR------LAREGINEKEYIDHYT---------- 156
                   ++P  + +   F  D+          L    +   +Y+++Y           
Sbjct: 120 EGTNPLLMQTPFRNPQTGAFDKDMLKKFLVDYAHLDASKM-PAQYVEYYQKMGAFWNFIE 178

Query: 157 ----KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-------- 204
               +         +    +  + +  + A     E   V    +    +          
Sbjct: 179 KTLIQSTLAEKYQNLIAKSLISNPVAAEDAFISRTEQSDVLLAAIPYSSISDSTITVSNS 238

Query: 205 ---------------------------IADPSNAVLTQWFEK------------YKDNYR 225
                                      +  PS+    +   +              + + 
Sbjct: 239 EIKDLYNKKKGSFEQPVETRNIKYIDVLVTPSDEDRKEVLNEVTEYATQLGTAADMNTFI 298

Query: 226 APE-------YKRISYILFDVHEKEKKIEISNDELQA-EYEKNKEKY---------FSPE 268
                        I+  ++      +   ++ +E+    Y +  + Y          +P+
Sbjct: 299 RSTGSVVPFSEIAINKTVYPNDVVARLDSVTINEVYGPYYNQADDSYNAFKIIAKQTAPD 358

Query: 269 IRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIP 321
                Q+    +  A      D  F +LK G  F  +A++ G++     L + + +    
Sbjct: 359 SIQYRQIQVYAEDAAKTATLADSIFNALKGGADFTDIAKKYGQTGEATWLTARNYEGAAL 418

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           D   A  I +L        + +   G   VI  V + K         V   I   +  +K
Sbjct: 419 DADNAKYINTLINSN-VKELTNLQIGQANVILQVLDKKAMKDKYKVAV---IKRPVEFSK 474

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
             E   + Y    +F+A  T+MD+I    +     L  ++ A        V  +    + 
Sbjct: 475 --ETYNKAYNDFSQFVAQNTTMDKIIANAEESGYRL--LERADFRSAEHRVGGVKGTREA 530

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           L  +F   +           +   M V +++  PA  R +  V   +K +    K     
Sbjct: 531 LKWIFAAKEGEVSPLYECGENDHLMVVALEKINPAGYRNINLVADMLKAEIIKDK----- 585

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF---GYDGISQVFSGP 556
             KA +L+ E  K   +   +     A   +   I                 +    S  
Sbjct: 586 --KAEKLIAE-MKSASSIDQVKSMANAVSDSVKHITFSAPAYVSVTRASEPALGAYASKA 642

Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
                  PI+      + +V N +    +   K        M      S I  L  +  V
Sbjct: 643 EINKLTGPIKGNAGVYMIQVYNKEKSAEEFDAKNEENNLSNMAGRYASSFINDLYKKADV 702

Query: 617 T 617
            
Sbjct: 703 K 703


>gi|301312046|ref|ZP_07217968.1| putative PPIC-type PPIASE domain protein [Bacteroides sp. 20_3]
 gi|300830148|gb|EFK60796.1| putative PPIC-type PPIASE domain protein [Bacteroides sp. 20_3]
          Length = 522

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 22/150 (14%)

Query: 262 EKYFSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSD 309
            +  +P    V  ++    K+            A   ++ +++G  F +LA+E     + 
Sbjct: 221 SRKPNPGRVHVAHILIAFPKDSAIQDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAAS 280

Query: 310 ISLG----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
              G     F    +       + F+L+K GD + V+   FGY I  + + K     SF+
Sbjct: 281 AKKGGVLPWFGIGEMVQP-FEQAAFALSKPGDLSGVVETRFGYHIIKLIDKKGR--PSFE 337

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           E +K ++ +M      E+  E YK  ++ +
Sbjct: 338 EEEKALSRRMGQ---GERNFELYKAFDDRM 364



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 15/212 (7%)

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
           +  PE  TV +      +EA   ++ L+KG+    + +   +   +     + +  +P  
Sbjct: 129 FRLPEK-TVSKDTVAVYQEAMRVYERLQKGEDMETVGKALAEKDKEHVACEYVRCLLPMQ 187

Query: 324 S---LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           S     D+ +SL   G  +  +    G+ +  V + KP        V   +    + +  
Sbjct: 188 SLKVFEDAAYSLP-IGVVSEPVRTKLGFHLIKVHSRKP--NPGRVHVAHILIAFPKDSAI 244

Query: 381 SE--KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
            +        + + + +  G    E+++     +              G+ V        
Sbjct: 245 QDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAASAKKGGVLPWFGIGEMVQPFEQ--- 301

Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                F    P      V    G ++   I +
Sbjct: 302 ---AAFALSKPGDLSGVVETRFGYHIIKLIDK 330


>gi|182414803|ref|YP_001819869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutus terrae
           PB90-1]
 gi|177842017|gb|ACB76269.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutus terrae
           PB90-1]
          Length = 328

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/367 (13%), Positives = 104/367 (28%), Gaps = 78/367 (21%)

Query: 31  SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
            D L     +     V  + +            +  + ++          +   L   ++
Sbjct: 25  GDNLNLRFANGIAAIVEDKVITVDDVRREIAPLIAQLQREARNEREFNE-KLEQLQDDVI 83

Query: 91  DNLVSGATLDQFIE-DIGLEADHGRVWGEIARSPLFHGKDNKFSHDV--FVSRLAREGIN 147
            +L+    + +    D         +   +A          +F +D   F++ L   G  
Sbjct: 84  QSLIDRVLIVKEFRKDEKKHIPDSFIDNRLADI-----LSEQFDNDRSKFLAYLHSRGTT 138

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
            +EY     + +    +                       E R    I            
Sbjct: 139 LREYRREVEEDIIYQYMRQ---------------------EQRKSQSI------------ 165

Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
            S   +  ++ + KD +   +   +  I F     E     ++++L+             
Sbjct: 166 VSPVRIETFYNENKDRFYQEDGVHLRLIQFSRANGE-----TDEDLR------------- 207

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVS 324
                         +A+     +K G+KF  LA E  +          G   +  +    
Sbjct: 208 -------------AKANLVMARIKAGEKFEDLAREYSQDSRRAKGGDWGWQKRSDL-KPE 253

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
            ++ +FSL KKG+ +  I    G  I    + K +      EV+ +I   +    +    
Sbjct: 254 FSEPLFSL-KKGEVSDPIILPEGCFILFAEDRKYAGIQPIDEVRDEIERVLVQQMSRNSQ 312

Query: 385 KEDYKRL 391
           +   +RL
Sbjct: 313 EHWLERL 319



 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 4/127 (3%)

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
           +T E++ +KAN LV+   K G+ F D+ +            +    +      +    +F
Sbjct: 201 ETDEDLRAKAN-LVMARIKAGEKFEDLAREYSQDSRRAKGGDWGWQKRSDLKPEFSEPLF 259

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTN--SKVGPVQE-KDKFISYLTQMMNKDLLDSVIAYL 610
           S     V    I     +++F      + + P+ E +D+    L Q M+++  +  +  L
Sbjct: 260 SLKKGEVSDPIILPEGCFILFAEDRKYAGIQPIDEVRDEIERVLVQQMSRNSQEHWLERL 319

Query: 611 KSQYSVT 617
           +    V 
Sbjct: 320 RRNGYVK 326


>gi|295397248|ref|ZP_06807346.1| peptidyl-prolyl cis-trans isomerase [Aerococcus viridans ATCC
           11563]
 gi|294974529|gb|EFG50258.1| peptidyl-prolyl cis-trans isomerase [Aerococcus viridans ATCC
           11563]
          Length = 376

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 60/156 (38%), Gaps = 12/156 (7%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           ++ Y         K IE++++E+Q  Y+     +       V  ++  +++ A +    L
Sbjct: 120 QVYYYKLMSESVSKYIEVTDEEIQTAYDDYTPSFT------VSHILVDDEETAKDLIAQL 173

Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F +LA+E     S      SLG  + +   D +   +   LA+    T  +   +
Sbjct: 174 DDGADFAELAKENSTDTSSAKNGGSLGEVNADSGLDETFFAAAQELAEGEYTTAPVETDY 233

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           GY I  +         S ++  + +   +   K ++
Sbjct: 234 GYHIIKMDE--KPEKGSLEDETEQLKESIVAEKLTD 267


>gi|198284724|ref|YP_002221045.1| SurA domain [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198249245|gb|ACH84838.1| SurA domain [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 477

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/469 (13%), Positives = 139/469 (29%), Gaps = 89/469 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               +  +    +  E      L +++L  ++     
Sbjct: 72  DKVVAVVNDNIITSMQLEQRVGAVRARLQTQNPNAMPPEDI----LRRQVLQQMILQDIE 127

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q     G++ D   +   I+       + N  + D     LA +G + + +        
Sbjct: 128 LQIAHRAGIKVDKATLDQAISNL----AQANHLTPDQLRQALANQGQSWERFTHDLED-- 181

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                            +L+D+  +   ENR                      +  + ++
Sbjct: 182 ----------------RILVDRLMQQEVENR---------------VHIGPDEVKTFAQQ 210

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            K      E   +S+ L  +          +                         V   
Sbjct: 211 LK------EMGGVSFDLQQIFIPLPDNPTPDA------------------------VGAA 240

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +++A++A   +  G++F ++A +      +L    LG      +P  ++A ++  L K G
Sbjct: 241 RRDAEQARDHVLAGERFGRVATQVSSGRDALQGGRLGWIKAGELP-PAVAQTLLQL-KVG 298

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           + +PVI G  G+ I  + ++K       +     I  +   +   ++ +   + +++ L 
Sbjct: 299 EISPVIPGPTGFHIFKLLDVKHGQPTVTEVKTAMIVLRAGNSLQLQEAEARAQDIQQALQ 358

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
            GT   E++R               G    G+           L R      P      +
Sbjct: 359 SGTRFSELARSYSQDPRTAANGGEMGWVAPGQ-------LPDSLERTLLTLQPGGVSSPI 411

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
            + +  Y+      S   R + +EE    +    +       V  + ++
Sbjct: 412 RVGNAIYIL----HSQAQRQQAVEE--KQIMAAARMQLYNRIVHERMDE 454


>gi|71275093|ref|ZP_00651380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Dixon]
 gi|71899689|ref|ZP_00681842.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
 gi|170731077|ref|YP_001776510.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12]
 gi|71163902|gb|EAO13617.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Dixon]
 gi|71730557|gb|EAO32635.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
 gi|167965870|gb|ACA12880.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12]
          Length = 468

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/420 (11%), Positives = 113/420 (26%), Gaps = 65/420 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S    +            G +   E      L +++L+ L+     
Sbjct: 34  DRIVAVVDDNVVLKSELDRAIHNVKSQYVGHEGQLPPDEV-----LQRQVLERLILIKLQ 88

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +  G+      +   I+       ++NK S D    +L  EGI+  E+       +
Sbjct: 89  VARAQTNGIRVSDDELNQAISSI----AENNKTSVDGLRQKLVAEGISFPEFRQSVRDEI 144

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYF--ENRSVDYIVLNNRHVPAIADPSNAV---- 212
           +   +   F    +  S   +D A           + +I++           + A     
Sbjct: 145 TVHHLRQGFAQSRIVVSEGEVDTALAQANSGAQYHLQHILVALPDGATSEQIAVAQKKIN 204

Query: 213 -LTQWFEKYKDNYRA-------------------------PEYKRISYILFDVHEKEKKI 246
            +    +K +  + A                         PE            +    +
Sbjct: 205 GIKSVIDKGELAFSAAAVRYSDSPNALESGDLGWRSLDEIPEAFAQMVQTMKPGQIVGPL 264

Query: 247 EISND-------ELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSL 290
             ++        E++                    ++            + + D     +
Sbjct: 265 RGTSGFQLLKLVEVRDSAAAAAGPRQMATEYHARHILVRITEKQKEAQAKAKIDTLRARI 324

Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G  F  +A E  +  +       LG F  +        + + +LA  G+ +     + 
Sbjct: 325 AGGADFQTVARESSEDANNSNQGGDLGWFPSDAF-GADFGNHVKALA-DGNVSEPFRSAA 382

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           G+ I      + +     +  +  I + +   K  E  +   + L     +   ++E + 
Sbjct: 383 GWHIVQRLGTRQTDVTK-ENQRAQIRDTIGQRKLEESYERFLRELRSEAYVSLQIEEPAD 441


>gi|91788447|ref|YP_549399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
 gi|91697672|gb|ABE44501.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
          Length = 261

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 4/156 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            + +KK  +++ +L+ EY+K        E +    ++   + EA     SLKKG KF  +
Sbjct: 105 ADYQKKNPVTDADLKGEYDKFAAANGGKEYK-ARHILVEKEAEAKAIIASLKKGGKFEDI 163

Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++Q K     + G       P       ++++  L K       +   FGY +  V +I
Sbjct: 164 AKKQSKDPGSGAKGGDLDWANPSGYVPEFSEALLKLNKGQLTDAPVKSQFGYHVIRVDDI 223

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + +   SF+EVK  IA QM+  K +   ++  K+ +
Sbjct: 224 RNAQLPSFEEVKPQIAQQMQQQKLATFQEDLRKKAK 259


>gi|227114234|ref|ZP_03827890.1| peptidyl-prolyl cis-trans isomerase SurA [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 431

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 124/393 (31%), Gaps = 66/393 (16%)

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           NS  Q + + +Q+ G  +         L  +I D L+    + Q  + +G++    ++  
Sbjct: 43  NSLLQSVKLNAQQAGQQLP----DDATLRHQITDRLIMDNIILQMAQKMGIQVTDEQLNQ 98

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-----RTDVVGMFVGGM 172
            I          N+ S D   S+LA EG+N   Y +   K +        +V        
Sbjct: 99  AITNIAA----QNRMSLDQLKSQLAYEGLNYNTYRNQIRKEMLISEVRNNEVRRRITVLP 154

Query: 173 RPSNLLLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAV-LTQWFEKYKDNYRAPEY 229
           +  + L  Q      EN  ++   I++     P       A  L     K  +       
Sbjct: 155 QEVDTLAKQIATQTGENDELNLSHILIPLSENPTQQQVDEAENLATSLVKQINEGADFGK 214

Query: 230 KRISYILFDVHEKEKKIEISN-DELQAEYEKNKEKYFSPEIR------------------ 270
             I+Y       K  ++      E+   + +   +    ++                   
Sbjct: 215 LAITYSADSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIR 274

Query: 271 -----------TVEQLVFP---------NQKEADEAFQSLKKG-KKFIQ----LAEEQGK 305
                          ++            Q +  E  Q +K G   F      L+++ G 
Sbjct: 275 GGNKSVSVTETHARHILIKPSVVMTDSQAQAKLAEVAQQIKNGSTDFASQAKLLSQDPGS 334

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           +     LG  S + + D +  D++  L KKG+ +  +H SFG+ +  + + +        
Sbjct: 335 ANQGGDLGWASPD-MYDPAFRDALLKL-KKGEISQPVHSSFGWHLIQLLDTRQVDKTD-- 390

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
                     R+    +  +E    ++E  A  
Sbjct: 391 --AAQKEQAYRMIFNRKFAEEAQTWMQEQRAAA 421



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 112/329 (34%), Gaps = 34/329 (10%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
            S L    +N ++         +   +       +   N++L  A++   +  + + +  
Sbjct: 43  NSLLQSVKLNAQQAGQQLPDDAT---LRHQITDRLIMDNIILQMAQKMGIQ-VTDEQLNQ 98

Query: 198 NNRHVPAIADPSNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              ++ A    S   L     +     + YR    K +       +E  ++I +   E+ 
Sbjct: 99  AITNIAAQNRMSLDQLKSQLAYEGLNYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVD 158

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAF-------QSLKKGKKFIQLAEE 302
              ++   +    +   +  ++ P      Q++ DEA        + + +G  F +LA  
Sbjct: 159 TLAKQIATQTGENDELNLSHILIPLSENPTQQQVDEAENLATSLVKQINEGADFGKLAIT 218

Query: 303 QGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                  +  G      + +  +L     + A+KG     I    G+ I  V++I+    
Sbjct: 219 YSADSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIR-GGN 277

Query: 362 VSFQEVKKDIANQMRI-------TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
            S    +    + +         ++A  K+ E  ++++     G++  + + + K++S D
Sbjct: 278 KSVSVTETHARHILIKPSVVMTDSQAQAKLAEVAQQIKN----GST--DFASQAKLLSQD 331

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
               +  G           P     L ++
Sbjct: 332 PGSANQGGDLGWASPDMYDPAFRDALLKL 360


>gi|194335197|ref|YP_002016991.1| SurA domain [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307674|gb|ACF42374.1| SurA domain [Pelodictyon phaeoclathratiforme BU-1]
          Length = 438

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/451 (13%), Positives = 141/451 (31%), Gaps = 98/451 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  VG + +  S   +          + +  +   E  ++ GL + ILD L+    +
Sbjct: 29  DRIVAVVGNEVIFKSEIDS---------RELMARMQYPELTKNNGLSRSILDGLIDQKII 79

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +   +  D   +      S  F     KF+        +R G +    ++   + L
Sbjct: 80  LAKAKIDSVSIDENSISSA--ASERFRELGTKFTSKA--DMESRLGKSSAGILEGIRQEL 135

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
               +V                                  R   A    S   +  ++  
Sbjct: 136 RNQQLVDTLR------------------------------RKKSAGVTVSYDEVMAFYSA 165

Query: 220 YKDNY-RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            K+   + PE   +S       +  K   +S +E                          
Sbjct: 166 NKEQIPQIPEEVSVS-------QILKYPPVSAEE-----------------------KAQ 195

Query: 279 NQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           +    +     +K G  F  +A    ++ G + S   LG  +K  +   S  ++ ++L  
Sbjct: 196 SLATMERIRTEIKGGADFAAMARQYSQDPGSAQSGGDLGFVAKGQLI-PSFENAAYAL-N 253

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-- 392
           +G  + ++   +GY +  + + +P+       V+  +   +   + S       ++L   
Sbjct: 254 EGKISDIVETRYGYHLIQLLSKEPNSI----HVRHIL---IGFDRKSGDFSSVTRQLNAV 306

Query: 393 --EFLALGTSMDEISRREKI----VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
             + L    +  +++++        +    ++     +     +A  P  +Q+L  +  K
Sbjct: 307 RADVLGGKETFADMAKKYSEDPASAAQGGTILLSGSSNPLFSPLALRPQLQQILSTL-QK 365

Query: 447 DDPLSKDHTVALPDGS--YMWVQIKESIPAR 475
              +S+   +  P G   Y   ++ E IPA 
Sbjct: 366 SGDISEVQKIDPPQGEPFYAIYRLNERIPAH 396


>gi|270263924|ref|ZP_06192192.1| chaperone SurA, precursor [Serratia odorifera 4Rx13]
 gi|270042117|gb|EFA15213.1| chaperone SurA, precursor [Serratia odorifera 4Rx13]
          Length = 432

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/445 (14%), Positives = 139/445 (31%), Gaps = 70/445 (15%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
            + L ++         + A  +      V +V    V   S +NS  Q + + +Q+ G  
Sbjct: 6   TLILGLVVCA------NTAFAAPQEVDKVAAVVDNGVVLESDVNSLLQSVKLNAQQAGQQ 59

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           +         L  +IL+ L+      Q  + +G+      +   I          NK S 
Sbjct: 60  LP----DDATLRHQILERLIMDNIQLQMAKKMGIAVSDADLDKAIGNIAA----QNKMSI 111

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENR--- 190
           D   SRLA EG+N   Y     K +  ++V        +      +D   +         
Sbjct: 112 DQMRSRLAYEGLNYNTYRSQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGAQNGSD 171

Query: 191 ---SVDYIVLNNRHVPAIADPSNAVL--------------------------TQWFEKYK 221
              ++ +I++     P+      A                                    
Sbjct: 172 TEMNISHILIPLPENPSQQQVDEAEALAKKLMGEINGGADFGKLAISYSADSQALKGGNM 231

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV 276
              +  E   +        +K   +      +     K  +   + +           ++
Sbjct: 232 GWGKLQEIPTLFAERLASAKKGDVVGPIRSGVGFHILKVNDIRGANQSVSVTEVHARHIL 291

Query: 277 FP---------NQKEADEAFQSLKKG-KKFI----QLAEEQGKSLSDISLGSFSKEYIPD 322
                       + +     +++K G  KF     QL+++ G +L    LG  S + I D
Sbjct: 292 LKPSVVLTDDQARAKLQAVAEAIKSGNAKFADEAKQLSQDPGSALQGGDLGWASPD-IYD 350

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            +  D++  L  KG+ +  +H SFG+ +  + + +     +    K      +   K +E
Sbjct: 351 PAFRDALMKL-NKGEVSKPVHSSFGWHLIQLLDTR-QVDKTDAAQKDRAYRMLFNRKFAE 408

Query: 383 KVKEDYKRLEEFLALGTSMDEISRR 407
           + +   +  +   A    +D  +++
Sbjct: 409 EAQTWMQE-QRAQAYVKILDGNAQQ 432



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 84/240 (35%), Gaps = 19/240 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR+   K +       +E  +++ I   E+ A  ++   +  S     +  ++ P 
Sbjct: 124 NYNTYRSQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGAQNGSDTEMNISHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--L 325
                       +  A +    +  G  F +LA         +  G+     + ++    
Sbjct: 184 PENPSQQQVDEAEALAKKLMGEINGGADFGKLAISYSADSQALKGGNMGWGKLQEIPTLF 243

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKKD-IANQMRITKASEK 383
           A+ + S AKKGD    I    G+ I  V++I+ +  +VS  EV    I  +  +    ++
Sbjct: 244 AERLAS-AKKGDVVGPIRSGVGFHILKVNDIRGANQSVSVTEVHARHILLKPSVVLTDDQ 302

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
            +   + + E +  G    + +   K +S D       G           P     L ++
Sbjct: 303 ARAKLQAVAEAIKSGN--AKFADEAKQLSQDPGSALQGGDLGWASPDIYDPAFRDALMKL 360


>gi|242238056|ref|YP_002986237.1| peptidyl-prolyl cis-trans isomerase SurA [Dickeya dadantii Ech703]
 gi|242130113|gb|ACS84415.1| Peptidylprolyl isomerase [Dickeya dadantii Ech703]
          Length = 433

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 130/410 (31%), Gaps = 67/410 (16%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
             V +V    V   S INS  Q + M SQ+ G  +         L  +IL+ L+    + 
Sbjct: 26  DKVAAVVDNGVVLESDINSLMQSVKMNSQESGQQLP----DDATLRHQILERLIMDNIVL 81

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q  + +G +    ++   IA       + N  + D   SRLA EGIN   Y     K ++
Sbjct: 82  QMAQKMGAQVSDDQLDRAIANI----AQQNHMTLDQLRSRLAAEGINYDTYRSQIRKDMT 137

Query: 161 RTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             DV        +      +D   +      S   + L+   +P   +PS   + +  E 
Sbjct: 138 IADVRNSEVRRRVTVLPQEVDALAQQIASQGSDKEVNLSQILLPLPENPSQEQVDK-AES 196

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEIS--------NDELQAEYEKNKEK-------- 263
             +       +   +    +        +           EL + + +            
Sbjct: 197 LANRLVKDARQGADFGKLAITYSADPQALKGGQMGWGRPQELPSLFAERLANPEKGQVIG 256

Query: 264 ----------YFSPEIR-----------TVEQLVFPN-----QKEA----DEAFQSLKKG 293
                         + R               ++          +A    ++  + +K G
Sbjct: 257 PIRSGVGFHILRVNDTRGGNQAISVTETHARHILLKTSVVMNDAQARTKLEDVARQIKSG 316

Query: 294 -KKFIQ----LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
              F      L+++ G +     LG  S + + D +  D++  L KKG+ +  +  SFG+
Sbjct: 317 STSFAAQAKLLSQDPGSANQGGDLGWASPD-MYDPAFRDALMQL-KKGEISAPVRSSFGW 374

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
            +  + + +                  R+    +  +E    ++E  A  
Sbjct: 375 HLIQLLDTRQVDKTD----AAQKERAYRMLFNRKFAEEAQTWMQEKRASA 420


>gi|107099580|ref|ZP_01363498.1| hypothetical protein PaerPA_01000593 [Pseudomonas aeruginosa PACS2]
 gi|313111760|ref|ZP_07797553.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           39016]
 gi|310884055|gb|EFQ42649.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           39016]
          Length = 404

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/408 (10%), Positives = 130/408 (31%), Gaps = 64/408 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S      ++    + ++ G  +  E      L +++L+ L+     
Sbjct: 5   DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 59

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G+      +   +        + N  S + F + L R+G++  +  +   + +
Sbjct: 60  QQIGDRSGIRISDEELNQAMGTI----AQRNGMSLEQFQAALTRDGLSYADAREQVRREM 115

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQA-------KRFYFENRSVDYIV-LNNRHVPAIADPSN 210
             + V        ++ S   +           +   E R  + ++ +       +   + 
Sbjct: 116 VISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASSDVIQAAA 175

Query: 211 AVLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
               + +++ K   ++                     ++ + +          + + +  
Sbjct: 176 RQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSLAVGDVT 235

Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
                     +    EK        +   V  ++            +K A + ++ ++ G
Sbjct: 236 EPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQKLYERIQSG 295

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F +LA+    + G +L+   L     E +        + +   +G+ +      FG+ 
Sbjct: 296 EDFGELAKSFSEDPGSALNGGDLNWIDPEALV-PEFRQ-VMNDTPQGELSKPFRSQFGWH 353

Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           I  V   +    +  F+E  +   + +R  K  E+++   +++ +   
Sbjct: 354 ILQVLGRRATDSSEKFRE--QQAVSVLRNRKYDEELQAWLRQIRDEAY 399



 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 105/321 (32%), Gaps = 42/321 (13%)

Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGINEKE-YIDHYTKMLSRTDVVGM 167
               RV   +    +   + ++   +V  + L R   +  +        + L   ++   
Sbjct: 2   VPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVLTQQVLERLIIENIQQQ 61

Query: 168 F--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
                G+R S+  L+QA     +   +                ++A             R
Sbjct: 62  IGDRSGIRISDEELNQAMGTIAQRNGMSLEQFQAALTRDGLSYADA-------------R 108

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--- 282
               + +           ++I++S  E++     +  K    E   +  ++ P  +    
Sbjct: 109 EQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASS 168

Query: 283 ---------ADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIF 330
                    A E +Q LK+G  F QLA  +     +L    +G      +P       I 
Sbjct: 169 DVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQP-FDSMIG 227

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASE 382
           SLA  GD T  +    G++I  +   +    +   EV          +I ++    K ++
Sbjct: 228 SLA-VGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQ 286

Query: 383 KVKEDYKRLEEFLALGTSMDE 403
           K+ E  +  E+F  L  S  E
Sbjct: 287 KLYERIQSGEDFGELAKSFSE 307


>gi|228984336|ref|ZP_04144517.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229154831|ref|ZP_04282946.1| Foldase protein prsA 2 [Bacillus cereus ATCC 4342]
 gi|228628779|gb|EEK85491.1| Foldase protein prsA 2 [Bacillus cereus ATCC 4342]
 gi|228775453|gb|EEM23838.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 285

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 17/148 (11%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
              +  K  ++  +++  Y+        PEI+    ++  ++ EA E  + L  G  F +
Sbjct: 115 AMNEAIKKSVTEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEE 165

Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+++ + L        LG F    +       + + L K G  +  +    GY I  ++
Sbjct: 166 LAKQESQDLLSKEKGGDLGYFHSGAMT-PEFETAAYKL-KIGQISDPVQSPNGYHIIKLT 223

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE 382
             K      + EVK  I   +   + ++
Sbjct: 224 GKKD--LQPYNEVKDSIRKNLEAERIAD 249


>gi|89901176|ref|YP_523647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
 gi|89345913|gb|ABD70116.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
          Length = 261

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 4/133 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
              +K   +++ +++AEY+K        E R    ++   + +A      LKKG KF ++
Sbjct: 105 ANYQKTSPVTDADIKAEYDKFAAANSGKEYR-ARHILVEKEDQAKAIIAQLKKGGKFDEI 163

Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K     + G       P       + ++  L K       +   FGY I  + ++
Sbjct: 164 AKKSSKDPGSGANGGDLDWANPSNYVPEFSQALIKLTKGQTTETPVKSQFGYHIIRLDDV 223

Query: 357 KPSFTVSFQEVKK 369
           + +    F +VK 
Sbjct: 224 RDAQLPKFDDVKP 236


>gi|294644737|ref|ZP_06722483.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|292639909|gb|EFF58181.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
          Length = 696

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 90/705 (12%), Positives = 204/705 (28%), Gaps = 124/705 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     +  V  V    +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117
           +   ++    G    ++  ++  +  ++  + V+   +++  + +GL      +      
Sbjct: 61  EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119

Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150
                + ++P F       F  D+    L     ++E +                     
Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQK 178

Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179
                     Y    +K L    V                + G+  S+++          
Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238

Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224
                    +  + Y E R + YI +       +   +    D +   L    E Y   +
Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTS-F 297

Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267
                    Y+    ++     ++     +  +   Y              K   K  + 
Sbjct: 298 IRSTGSEAPYVDLFYNKTAFPSDVVARLDSASVGTIYGPYYNGADNTINSFKIVAKAAAA 357

Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319
           +     Q+    +        AD  + ++K G  F  LA++ G     + ++   +    
Sbjct: 358 DSVEFRQIQVYAEDAVKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417

Query: 320 I--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
           I   ++    +I +          +  +   VI  V+N K         V   I  ++  
Sbjct: 418 IDGDNLKFISAINNAGVNELVNLPMGQAN--VILQVTNKKSVKDKYKVAV---IKREVEF 472

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
           +K  E     Y    +F+A   S++++    +     L  +D          +  +   +
Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528

Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           + L   F K  P          +    M V +    P   R L+ V   ++ +    K A
Sbjct: 529 EALRWAFDKAKPGDVSGLYECGESDHMMVVGLVGIKPEGYRPLKAVQDQLRAEIVKDKKA 588

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
           E++ +           + K   +   +    ++T      +           +    S  
Sbjct: 589 EKIMADMKAANATSFNQYKEMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASAA 645

Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNK 600
                  PI+      V +V    K+    +     + LT M  +
Sbjct: 646 EVNQLSAPIKGNAGVFVLQVYGKDKLNETFDAKAEEATLTNMHAR 690


>gi|289422639|ref|ZP_06424480.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
 gi|289156939|gb|EFD05563.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
          Length = 349

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 93/287 (32%), Gaps = 51/287 (17%)

Query: 146 INEKEYIDHYTKM--LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
           I+ KE  +       +  +         M   +    +  +              +    
Sbjct: 33  ISSKEIENQLKFQKWMMESQYGEEVWTQMEAQDKNYQETMKKQVATSVSRIRAFTDYAEK 92

Query: 204 AIADPSNAVLTQWFEKYK------------------DNYRAPEYKRISYILFDVHEKEKK 245
               P    L ++  + K                  + +     K  + ++      +KK
Sbjct: 93  NGVKPDQKQLKEFQAQNKKMLEDEKMKKSFEKTGLDEKFLDDFAKEKATMVSLSEYLKKK 152

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------------QKEADEAFQS 289
            + +  EL+  YEKN  K           ++                   +K+AD+ ++ 
Sbjct: 153 SKPTEKELKDYYEKNSVKA------KAAHILLTTTDTNGKPLSPEKKAEVKKKADKIYEE 206

Query: 290 LKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            K G  F +LA+    + G + +   LG F K  +       ++FS+ K+G+ +  I   
Sbjct: 207 AKSGVDFKELAKKNSQDPGSAQNGGELGEFGKGQMV-PEFEKAVFSM-KEGEISKPIETQ 264

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +GY I  +  I  S    F +VK ++   +   KA +  +      +
Sbjct: 265 YGYHIIKLEKITKSE---FDKVKAEMEAALSQEKAQKLAQSIIDAAK 308


>gi|157368971|ref|YP_001476960.1| peptidyl-prolyl cis-trans isomerase SurA [Serratia proteamaculans
           568]
 gi|157320735|gb|ABV39832.1| SurA domain [Serratia proteamaculans 568]
          Length = 432

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/445 (14%), Positives = 144/445 (32%), Gaps = 70/445 (15%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
            + L ++         + A  +      V +V    V   S +++  Q + + +Q+ G  
Sbjct: 6   TLILGLVVCA------NTAFAAPQEVDKVAAVVDNGVVLESDVSTLLQSVKLNAQQAGQQ 59

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           +  ++     L  +IL+ L+      Q  + +G+      +   I          NK S 
Sbjct: 60  LPDDK----TLRHQILERLIMDNIQLQMAKKMGINVSDADLDKAIGNIAA----QNKMSI 111

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENR--- 190
           D   SRLA EG+N   Y     K +  ++V        +      +D             
Sbjct: 112 DQMRSRLAYEGLNYNTYRSQIRKEMLISEVRNNEVRRRVTILPQEVDSLAAQVGAQNGSD 171

Query: 191 ---SVDYIVLNNRHVPAIADPSNAVL--------------------------TQWFEKYK 221
              ++ +I++     P+ A   +A                                    
Sbjct: 172 TEMNISHILIPLPENPSQAQVDDAEALAKKLMGEINGGADFGKLAISYSADSQALKGGNM 231

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV 276
              +  E   +        +K   +      +     K  +   + +           ++
Sbjct: 232 GWGKLQEIPTLFAERLVNAKKGDVVGPIRSGVGFHILKVNDIRGANQSVSVTEVHARHIL 291

Query: 277 FP---------NQKEADEAFQSLKKG-KKFI----QLAEEQGKSLSDISLGSFSKEYIPD 322
                       + +  E  +++K G  KF     QL+++ G +L    LG  S + I D
Sbjct: 292 LKPSVVLTDDQARAKLQEVAEAIKSGRAKFADEAKQLSQDPGSALQGGDLGWASPD-IYD 350

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            +  D++  L+K G+ +  +H SFG+ +  + + +     +    K      +   K +E
Sbjct: 351 PAFRDALMKLSK-GEVSQPVHSSFGWHLIQLLDTR-QVDKTDAAQKDRAYRMLFNRKFAE 408

Query: 383 KVKEDYKRLEEFLALGTSMDEISRR 407
           + +   +  +   A    +D  +++
Sbjct: 409 EAQTWMQE-QRAQAYVKILDGNAQQ 432



 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 83/244 (34%), Gaps = 27/244 (11%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR+   K +       +E  +++ I   E+ +   +   +  S     +  ++ P 
Sbjct: 124 NYNTYRSQIRKEMLISEVRNNEVRRRVTILPQEVDSLAAQVGAQNGSDTEMNISHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--L 325
                       +  A +    +  G  F +LA         +  G+     + ++    
Sbjct: 184 PENPSQAQVDDAEALAKKLMGEINGGADFGKLAISYSADSQALKGGNMGWGKLQEIPTLF 243

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKK-----DIANQMRITK 379
           A+ + + AKKGD    I    G+ I  V++I+ +  +VS  EV         +  +   +
Sbjct: 244 AERLVN-AKKGDVVGPIRSGVGFHILKVNDIRGANQSVSVTEVHARHILLKPSVVLTDDQ 302

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           A  K++E  + ++   A        +   K +S D       G           P     
Sbjct: 303 ARAKLQEVAEAIKSGRAK------FADEAKQLSQDPGSALQGGDLGWASPDIYDPAFRDA 356

Query: 440 LFRV 443
           L ++
Sbjct: 357 LMKL 360


>gi|319781324|ref|YP_004140800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317167212|gb|ADV10750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 305

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 5/137 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++++ E++A Y++               ++   ++EA+   + L  G  F +LA E    
Sbjct: 138 KVTDAEVRARYDQEIANTPPTNELHARHILVKTKEEAEAIIKQLDGGADFQKLANEHTSD 197

Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                S   LG F    +       +  +L         +   FG+ +  + + +     
Sbjct: 198 PSGKTSGGDLGWFGPGQMV-PEFDKAASALEVGKYTEQPVQTQFGWHVIKLEDKRTKQPP 256

Query: 363 SFQEVKKDIANQMRITK 379
           +F +VK      +   K
Sbjct: 257 AFDDVKDQAKQAVIRDK 273


>gi|229028936|ref|ZP_04185035.1| Foldase protein prsA 2 [Bacillus cereus AH1271]
 gi|228732216|gb|EEL83099.1| Foldase protein prsA 2 [Bacillus cereus AH1271]
          Length = 285

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 79/198 (39%), Gaps = 14/198 (7%)

Query: 194 YIVLNNRHVPAIADPSNA----VLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEI 248
           Y ++    +      S+      + +  ++Y D + A  E  R+       ++ + K+ +
Sbjct: 57  YEMMAQDVITKKYKVSDDDVDREVQKAKKQYGDQFTAVLENNRLKDEADFKNQIKFKLAM 116

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
           +    ++  EK+ + ++ PEI+    ++  ++ EA E  + L  G  F +LA+++ + L 
Sbjct: 117 NEAIKKSVTEKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LG F    +       + + L      +  +    GY I  ++  K      +
Sbjct: 176 SKDKGGDLGYFHSGTMT-PEFETAAYKL-NIDQISEPVKSPNGYHIIKLTGKKD--LQPY 231

Query: 365 QEVKKDIANQMRITKASE 382
            EVK  I   +   + ++
Sbjct: 232 DEVKGSIRKNLEAERIAD 249


>gi|126649428|ref|ZP_01721669.1| peptidylprolyl isomerase [Bacillus sp. B14905]
 gi|126593753|gb|EAZ87676.1| peptidylprolyl isomerase [Bacillus sp. B14905]
          Length = 326

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 98/276 (35%), Gaps = 28/276 (10%)

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVHEK 242
           ++  + +    + ++  L + ++     +                 +K    +     + 
Sbjct: 57  LVTEKVLSDKYEVTDKELKEAYDTTASQFGDGFAQALAESGLTEQGFKDSLRVQLLQEKA 116

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
            K   I  ++++  YE+ K +           ++  ++K A EA + +K G KF  +A+E
Sbjct: 117 LKDQAIKEEDVKKYYEQMKTELNG------RHILVADEKTAKEAIEKIKGGAKFADVAKE 170

Query: 303 QGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
                    +   LG FS   + D    D+ ++L +    +  +  SFGY +  +++ + 
Sbjct: 171 YSTDTASAQNGGELGWFSVGSMVD-EFNDAAYAL-ELNTLSEPVKSSFGYHVIEITDKRD 228

Query: 359 SFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
              V +F++ ++ I   M       +  E    L++ +A       +   +K +   L  
Sbjct: 229 VKDVGAFKDEEEKIRTSMLSKL--NQTGEAQTILKDIVAKMAKDANVKTSDKDLKDSLEF 286

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
                ++       A    E+   +    D     D
Sbjct: 287 FTTTSEEQAKAAEEAAKKAEENAAKEESSDKAEDTD 322


>gi|325970754|ref|YP_004246945.1| hypothetical protein SpiBuddy_0924 [Spirochaeta sp. Buddy]
 gi|324025992|gb|ADY12751.1| hypothetical protein SpiBuddy_0924 [Spirochaeta sp. Buddy]
          Length = 536

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/429 (13%), Positives = 135/429 (31%), Gaps = 71/429 (16%)

Query: 6   RKASRTWV-AKIFLVVLFVPFLIWGLSDALFSVSGSSTVV--SVGRQKVPFSSFINSWKQ 62
           RK +  WV   + L+++ V F++    +A      S+ +V    G+Q++ +  + N +  
Sbjct: 54  RKITIGWVLGMLILILIAVSFVLAPAIEAFVGKRTSNGIVFGKYGKQEIKYV-YGNYFYD 112

Query: 63  ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
           ++   + +       +      + K   D+ V    +++     G+ A    V   I  S
Sbjct: 113 QVQNYANQYKSSGTDQTQALYQIWKSAYDSTVIFTAINELATKAGIIAADDVVNRAIINS 172

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
             +  KD KF  + +    A    ++        + L    VV    G +  S+   +  
Sbjct: 173 GAY-NKDGKFDVETYQKASAE---SKANVEKSIRRSLPYQIVVDDV-GTVLSSSAEAEYI 227

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
                + R+  Y+ ++    P      N + +Q+  + K  +                  
Sbjct: 228 ATMASKGRTFRYLSVDQNQYP------NELASQYALQNKQLFYT---------------- 265

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAE 301
                                        +  +     ++A   ++S+  G+  F   A 
Sbjct: 266 ---------------------------MDLSIISVETAEQAKTVYESITSGQTTFEAAAV 298

Query: 302 EQGKSLSDISLGSFSK----EYIPDVSLADSIFSL--AKKGDFTPVIHGSFGYVIAHVS- 354
                      G   +      + +   AD   SL  AK GD       +  + +  V+ 
Sbjct: 299 ANSLDSYAAQEGKVGQLYYYGIVSNFKNADEALSLLSAKDGDVIGPFEANGSFTLYKVNS 358

Query: 355 ---NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                  +   +   VK  +A  +  +   +    D  +     A    +DE++ +  + 
Sbjct: 359 AAVESDYADETTLASVKAYLA--VNDSALIDSYLSDLAKSWAETAKAEGLDEVALKNNLE 416

Query: 412 SIDLPLVDF 420
            + +    +
Sbjct: 417 VVAVGATPY 425


>gi|262383886|ref|ZP_06077022.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294784|gb|EEY82716.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 533

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 22/150 (14%)

Query: 262 EKYFSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSD 309
            +  +P    V  ++    K+            A   ++ +++G  F +LA+E     + 
Sbjct: 232 SRKPNPGQVHVAHILIAFPKDSAIQDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAAS 291

Query: 310 ISLG----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
              G     F    +       + F+L+K GD + V+   FGY I  + + K     SF+
Sbjct: 292 AKKGGGLPWFGVGEMVQP-FEQAAFALSKPGDLSGVVETRFGYHIIKLIDKKGR--PSFE 348

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           E +K ++ +M      E+  E YK  ++ +
Sbjct: 349 EEEKALSRRMGQ---GERNFELYKAFDDRM 375



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 67/212 (31%), Gaps = 15/212 (7%)

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
           +  PE  TV +      +EA   ++ L+KG+    + +   +   +     + +  +P  
Sbjct: 140 FRLPEK-TVSKDTVAVYQEAMRVYERLQKGEDMETVGKALAEKDKEHVACEYVRCLLPMQ 198

Query: 324 S---LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           S     D+ +SL   G  +  +    G+ +  V + KP+       V   +    + +  
Sbjct: 199 SLKVFEDAAYSLP-IGVVSEPVRTKLGFHLIKVHSRKPNPGQ--VHVAHILIAFPKDSAI 255

Query: 381 SE--KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
            +        + + + +  G    E+++     +              G+ V        
Sbjct: 256 QDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAASAKKGGGLPWFGVGEMVQPFEQ--- 312

Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                F    P      V    G ++   I +
Sbjct: 313 ---AAFALSKPGDLSGVVETRFGYHIIKLIDK 341


>gi|149377958|ref|ZP_01895684.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola
           DG893]
 gi|149357732|gb|EDM46228.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola
           DG893]
          Length = 429

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/397 (12%), Positives = 123/397 (30%), Gaps = 72/397 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S          G +  + G  +         L++++L+ L+S +  
Sbjct: 21  DQVVAVVNDDVILQSELEARINTITGRLRAQ-GTGLPPRDI----LEERVLEQLISESIQ 75

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G+      +   +A       + N  +   F  +L +EG+  +E  +     +
Sbjct: 76  LQMADRAGMRISDNELNETLASI----AQRNNMTLAQFEQQLVQEGVTYREAREQIRNEM 131

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQ-AKRFYFENRS-----VDYIVLNNRHVPAIADPSN-- 210
             + V        +R ++  ++        + RS     + +I++         + S   
Sbjct: 132 ITSRVQQRQVGNRVRVTDREVENYLAAMAGQGRSNAEYELAHILIEVNDFNDEEEVSAAR 191

Query: 211 AVLTQWFEKYKD--NYRAPEYKR-----------ISYILFDVHEKEKKIEISNDE----- 252
             + Q  E+  +  ++R+                + +   +         + + E     
Sbjct: 192 EKVEQLREEIAEGRDFRSVAVAESDASNALDGGNMGWRAENQLPSLVADVVPDLETGTVS 251

Query: 253 -----------LQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADE----AFQSLKK 292
                      +     +  +K    E   V  ++        + +A+      +Q +  
Sbjct: 252 PVLRNSSGFHLVMVMDRRGGDKAQFIEQSKVRHILVRTSETVSEAQAEATIRDLYQQIDN 311

Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  +A E            +LG  S   +       ++   A  G+        FG+
Sbjct: 312 GADFAVIAREHSDDPVSGSDGGNLGWVSPGQMV-PEFEQAMME-ADVGELKGPFRSQFGW 369

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            I  V + +          ++DI+  +R ++A + + 
Sbjct: 370 HILQVQDRR----------QQDISGDVRESEARQAIY 396


>gi|124486132|ref|YP_001030748.1| hypothetical protein Mlab_1314 [Methanocorpusculum labreanum Z]
 gi|124363673|gb|ABN07481.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanocorpusculum
           labreanum Z]
          Length = 93

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
                 ++   + +A E  Q +  G  F +LA+   +  S      LG F K  +     
Sbjct: 3   RVKASHILVKTEAQAKEIMQKISAGDDFAKLAKMYSQCPSGNAGGDLGYFGKGQMVKP-F 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            D+ F  AK GD    +   FG+ I  V++IK
Sbjct: 62  EDACFK-AKAGDVVGPVKTQFGWHIIKVTDIK 92


>gi|88803462|ref|ZP_01118988.1| PPIC-type PPIASE domain protein [Polaribacter irgensii 23-P]
 gi|88781028|gb|EAR12207.1| PPIC-type PPIASE domain protein [Polaribacter irgensii 23-P]
          Length = 544

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/411 (14%), Positives = 137/411 (33%), Gaps = 65/411 (15%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           KI L + F+ F++        S     T+V++  +      F   +++ L          
Sbjct: 3   KIVLSICFLIFVL------NLSSQNKKTLVTINNEITTVEDFKRIYEKNLD--------A 48

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           ++S+ A+SV   KK L   +           + L      +        +          
Sbjct: 49  IDSKEAKSV---KKNLTLYIDYRLKVAEAYHLKL----DTLRSYQKEIKM---------- 91

Query: 135 DVFVSRLAREGINEKEYIDHYTKML---SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
             +  +L    + +  +I    K +   +  +V    +      + +       Y +  +
Sbjct: 92  --YREQLMAPYLQDTTFISDLVKEIYFRTTNEVKAKHILVRTSEDAVPRDTLIAYNKITA 149

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFE------KYKDNYRAPEYKRISYILFDVHEKEKK 245
           +   ++N     A+A   +  ++   +        K +    +  ++     DV    K 
Sbjct: 150 IRNRIINGEDFEAVAVAVSEDVSAQDDPRSGRKGNKGDLGYFDAFKMVSSFEDVAYTTKI 209

Query: 246 IEIS---NDELQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQSLKKGKKFI 297
             +S     +      K  +   S     V  ++  +     + +  E +  +++ + F 
Sbjct: 210 GAVSHPFKTQFGFHILKVDDFRTSKGALEVAHILITDTTAVGKSKIAEVYAKIQENETFE 269

Query: 298 QLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +LA +     S    G     F    +      D+ FSL K+GD +      FG+ I  +
Sbjct: 270 KLAAQFSMDTSSKRNGGKLNKFGIGKMVKP-FEDAAFSLQKEGDVSKPFRTRFGWHIVKL 328

Query: 354 SNIKPSFTVSFQEVKKDIANQMRI--------TKASEKVKEDYKRLEEFLA 396
               P    SF E++ ++ ++++         T    K+K  Y  +E  +A
Sbjct: 329 LAKYP--VKSFLELRAELTDKVKRSSRMQMSETAVINKLKASYSIIENEIA 377



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 41/202 (20%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------D 284
                 +    IS+  ++  Y      + +      + ++    ++A             
Sbjct: 96  LMAPYLQDTTFISDL-VKEIY------FRTTNEVKAKHILVRTSEDAVPRDTLIAYNKIT 148

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSD------------ISLGSFSKEYIPDVSLADSIFSL 332
                +  G+ F  +A    + +S               LG F    +   S  D  ++ 
Sbjct: 149 AIRNRIINGEDFEAVAVAVSEDVSAQDDPRSGRKGNKGDLGYFDAFKMV-SSFEDVAYT- 206

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            K G  +      FG+ I  V + + S   + +     I +   + K   K+ E Y +++
Sbjct: 207 TKIGAVSHPFKTQFGFHILKVDDFRTSKG-ALEVAHILITDTTAVGK--SKIAEVYAKIQ 263

Query: 393 -----EFLALGTSMDEISRREK 409
                E LA   SMD  S+R  
Sbjct: 264 ENETFEKLAAQFSMDTSSKRNG 285


>gi|118595140|ref|ZP_01552487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
           bacterium HTCC2181]
 gi|118440918|gb|EAV47545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
           bacterium HTCC2181]
          Length = 262

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 68/159 (42%), Gaps = 7/159 (4%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            + Y L+          ++ +E+   Y + K  +   E +    ++  ++ +A+   + L
Sbjct: 95  ELIYTLYLQDYIINN-PVTEEEVATAYNQYKAAFNESEFK-ASHILLTSKNKAELIIKKL 152

Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G+ F  LA+++ +       +  LG FSKE +      D++ +      F   +   F
Sbjct: 153 DAGESFGVLAKKESEDNDTKNNNGDLGWFSKETMVQSIF-DAVKNTGSGEIFPKPVKTQF 211

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
           G+ +  V +++P    +F + ++ I  +++  K  + + 
Sbjct: 212 GWHVIKVDDVRPLEVETFAQKEEFIKTELQKIKLKQHLS 250


>gi|302039584|ref|YP_003799906.1| putative peptidylprolyl isomerase [Candidatus Nitrospira defluvii]
 gi|300607648|emb|CBK43981.1| putative Peptidylprolyl isomerase [Candidatus Nitrospira defluvii]
          Length = 344

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/394 (12%), Positives = 120/394 (30%), Gaps = 86/394 (21%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           +R A+        +  L + F++  +S+A  +      V  V    +  S        E 
Sbjct: 30  VRSATGFTTTGALIFCLCLLFVL--ISNAEAAKLEDRIVAVVNSDLIMLSELKRDLLPEQ 87

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
             + +         R ++   +   +  ++      Q  ++ G++     V   +     
Sbjct: 88  DRLRKLYKGEDLERRLKTA--EAMGVTKMIERKLQLQAAKNKGVDVSDQEVVQAVEEMKK 145

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
                +    +                     + L+   VV                   
Sbjct: 146 QGEAIDSADPNT---------------ARSIREQLTLMRVVD------------------ 172

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
                R V  +++           +++ + +++++++D +  PE  ++S IL        
Sbjct: 173 -----REVRGLIM----------VADSEMKRYYQEHQDRFAYPEEYQLSQILIKP----- 212

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA--EE 302
                                +P+  +           A+    +LK+G+ F  LA    
Sbjct: 213 --------------------RTPDGLSAAH------GRAEALLATLKQGEPFEDLALRFS 246

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
            G   S        ++     +L  ++ S+   G  T ++  + G  I  V + KP    
Sbjct: 247 DGADASRGGRLGLVRQGELIPALEQALTSV-DVGKITGIVETAEGLHIVRVDDKKPRQFR 305

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
            F++VK +I + +   K  ++ +     L+    
Sbjct: 306 PFEQVKAEIQSLVFQQKTEDQYQIWMADLKNKAY 339



 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 12/132 (9%)

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLAL---GTSMDEISRREKIVSIDLPLVDFAGKDVK 426
            ++  +   +  + +   + R E  LA    G   ++++ R      D       G   +
Sbjct: 204 QLSQILIKPRTPDGLSAAHGRAEALLATLKQGEPFEDLALRFSD-GADASRGGRLGLVRQ 262

Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
           G+ + A       L +     D       V   +G ++ V++ +  P + R  E+V  ++
Sbjct: 263 GELIPA-------LEQALTSVDVGKITGIVETAEGLHI-VRVDDKKPRQFRPFEQVKAEI 314

Query: 487 KKDWKTVKTAEE 498
           +      KT ++
Sbjct: 315 QSLVFQQKTEDQ 326


>gi|319793857|ref|YP_004155497.1| ppic-type peptidyL-prolyl cis-trans isomerase [Variovorax paradoxus
           EPS]
 gi|315596320|gb|ADU37386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           EPS]
          Length = 261

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 6/155 (3%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           + YK+         +   LFD     K   +S+ +++AEY+K        E +    ++ 
Sbjct: 85  DDYKNQLELARQAILIRALFD--NYRKTNPVSDADVKAEYDKFVAANGGKEYK-ARHILV 141

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAK 334
             + +A +    LKKG KF  +A++Q K     + G       P       ++++  L K
Sbjct: 142 ETEDQAKKIMADLKKGAKFEDIAKKQSKDPGSGANGGDLDWANPASFVPEFSEAMIKLKK 201

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
                  I   FGY I  V +I+ +     +EVK 
Sbjct: 202 GETTPAPIKTQFGYHIIRVDDIRQAQLPKLEEVKP 236


>gi|284122311|ref|ZP_06386843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283829362|gb|EFC33756.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 186

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 71/161 (44%), Gaps = 14/161 (8%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKKGKKFIQ 298
           +S ++++A Y++ +  + SP    + Q++            +  A+     L +G+ F Q
Sbjct: 19  VSPEDIRAYYKEQQPLFTSPHAHHIRQILLLPKLGENMETLKARAEILMSQLDEGRTFEQ 78

Query: 299 LAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           LAE   +  +S+    LG  +K  +    L D++  ++  G+ TP+I    G  I  +  
Sbjct: 79  LAELFSDGSESVMGGDLGFVTKNELL-PPLRDALHKIS-PGEVTPLIETEIGIHILRLEE 136

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
            +P  T  F++VK  I +++   K  +        L++   
Sbjct: 137 SRPGVTEPFEKVKDAIESRLYQEKLQKSHDAWMSSLKDKAY 177


>gi|261886000|ref|ZP_06010039.1| foldase protein PrsA [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 268

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 11/151 (7%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------ 292
           + ++   I++   + +  YE+NK+K+  P     + ++   +KEA +  +SL        
Sbjct: 99  MKKQFDAIKVDEKKAKDFYEQNKDKFVVPAQAKAKHILVETEKEAADIIKSLNGLKGAAL 158

Query: 293 GKKFIQLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            KKF ++A+E+      +++   LG F +  +   S + + F L K       +   FGY
Sbjct: 159 DKKFSEIAKEKSIDKSSAVNGGELGWFGESQMV-ASFSKAAFGLKKGEITNKPVKSEFGY 217

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
            +    ++K    V F + K +I NQM+  +
Sbjct: 218 HVILKEDMKDKSAVGFDKAKANIENQMKSEE 248


>gi|319639633|ref|ZP_07994380.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102]
 gi|317399204|gb|EFV79878.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102]
          Length = 329

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/356 (9%), Positives = 97/356 (27%), Gaps = 90/356 (25%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                  V  + +       +  Q    + +         +  +  L +++L  +++ + 
Sbjct: 52  SDGIAAVVDNEVITHRQVEQAVAQARQTMPK-------GTQMDANELRQQVLAQMINQSL 104

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  +   ++A    +   IA +P                                 + 
Sbjct: 105 ILQAGKRRNIQATDSEIEAVIAHNPNIKNPS-----------------------AAVRQD 141

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           ++ + +V                                  + +   +  S++ + ++ E
Sbjct: 142 IADSIIVEKVRQ-----------------------------QAIMQNSRVSDSEVARYIE 172

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + K                        I +   +   +Y        +            
Sbjct: 173 QAKQQ---------------------GITLPEADPVRQYHAQHILIKADNDNAA----VG 207

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
            +    + +   + G  F  LA +  +  S      LG F+   +      +++  L K 
Sbjct: 208 AESTIRKIYSQARSGADFGGLARQYSQDSSAGNGGDLGWFADGMMV-APFEEAVHKL-KP 265

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G  +  +   FG+ I  +++++ + T   +  +  +   +   KA +      + L
Sbjct: 266 GQISAPVRTQFGWHIIKLNDVREAGTPE-ERQQNAVRQYLSQQKAQQATTNLLREL 320


>gi|229592952|ref|YP_002875071.1| putative chaperone [Pseudomonas fluorescens SBW25]
 gi|229364818|emb|CAY52844.1| putative chaperone [Pseudomonas fluorescens SBW25]
          Length = 444

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/413 (12%), Positives = 133/413 (32%), Gaps = 64/413 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S      K+    I+++ G V  +       LD+++L+ L+     
Sbjct: 32  DKVVAIVDNDVIMQSQLDQRVKEVQQTIAKRGGGVPPTSV-----LDQQVLERLIVENLQ 86

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G+      +   +        + N  S D F + LA +G++ ++  D   + +
Sbjct: 87  LQIGDRSGIRISDEELNQAVGTI----AQRNNMSIDQFRAALAHDGLSYEDARDQIRREM 142

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAK-------RFYFENRSVDYIVLNNRHVPAIA-DPSN 210
             + V        ++ S   +           +   E    + ++       +   + + 
Sbjct: 143 IISRVRQRRVAERVQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPDSANSEQLNAAA 202

Query: 211 AVLTQWFEKYKD--NYR-----------APEYKRISYILFDVHEKEKKIEISNDE----- 252
           A     +++ K   ++            A E   + +            E+S  E     
Sbjct: 203 AKTQAIYDRLKAGADFAQMAIAQSGSDNALEGGDMGWRKAAQLPPPFDRELSAMEVGGIT 262

Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
                     +    EK   +    +   V  ++            ++ A + +  ++ G
Sbjct: 263 QPARTPGGFIILKLLEKRGGETSLKDEVHVRHILVKPSEIRTEAQTKELAQKIYDRIESG 322

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F  LA+    + G +L+   L     + +        + +   +G  +      +G+ 
Sbjct: 323 EDFATLAKSFSEDPGSALNGGDLNWIDPKALV-PEFQQ-VMADTPQGVLSKPFKTQYGWH 380

Query: 350 IAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +  V   + +      + ++  A N +R  K  E+++   +++ +   +   +
Sbjct: 381 VLEVLGRRATDNT--NQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVENKL 431



 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 105/341 (30%), Gaps = 42/341 (12%)

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
           L  LV GA L              +V   +    +   + ++   +V  +   R G    
Sbjct: 9   LRPLVLGALLLGTASAHAAVQQLDKVVAIVDNDVIMQSQLDQRVKEVQQTIAKRGGGVPP 68

Query: 150 E--YIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
                    + L   ++        G+R S+  L+QA     +  ++             
Sbjct: 69  TSVLDQQVLERLIVENLQLQIGDRSGIRISDEELNQAVGTIAQRNNMSIDQFRAALAHDG 128

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
                      +E  +D  R    + +           +++++S  E++     +  K  
Sbjct: 129 LS---------YEDARDQIR----REMIISRVRQRRVAERVQVSEQEVKNFLASDLGKMQ 175

Query: 266 SPEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAEEQGK---SLSDI 310
             E   +  ++ P    A               +  LK G  F Q+A  Q     +L   
Sbjct: 176 LSEELHLANILIPTPDSANSEQLNAAAAKTQAIYDRLKAGADFAQMAIAQSGSDNALEGG 235

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK-- 368
            +G      +P       + ++ + G  T       G++I  +   +   T    EV   
Sbjct: 236 DMGWRKAAQLP-PPFDRELSAM-EVGGITQPARTPGGFIILKLLEKRGGETSLKDEVHVR 293

Query: 369 ------KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
                  +I  + +  + ++K+ +  +  E+F  L  S  E
Sbjct: 294 HILVKPSEIRTEAQTKELAQKIYDRIESGEDFATLAKSFSE 334


>gi|213967673|ref|ZP_03395820.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tomato T1]
 gi|213927449|gb|EEB60997.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tomato T1]
          Length = 428

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/423 (12%), Positives = 137/423 (32%), Gaps = 66/423 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V      +  L  ++LD L+     
Sbjct: 19  DSVVAIVDNDVIMKSQMGQRVR-EVQQTIAKRGSGVPP----AADLQPQVLDRLILENLQ 73

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++ ++  +   + +
Sbjct: 74  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYEDAREQVRREM 129

Query: 160 SRTDVVGM-FVGGMRPSNLLL------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V        ++ S   +      DQ K    E   +  I++      +      A 
Sbjct: 130 IISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 189

Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
           +     +++ K   ++                     ++ + +     +    + I +  
Sbjct: 190 VKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPIGDVT 249

Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVF---------PNQKEADEAFQSLK 291
                     +    EK   +  +   +   V  ++            +  A + ++ ++
Sbjct: 250 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIE 309

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA+    + G +L+   L       +      D + S   +G+ +     ++G
Sbjct: 310 NGEDFATLAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRD-VMSSTPQGELSKPFKTAYG 367

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           + +  V   + +      + +   A + +R  K  E+++   +++ +   +   +   ++
Sbjct: 368 WHVLEVLGRRATDATG--QARDQQALSVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 425

Query: 407 REK 409
             +
Sbjct: 426 AAQ 428


>gi|254429963|ref|ZP_05043670.1| SurA N-terminal domain family [Alcanivorax sp. DG881]
 gi|196196132|gb|EDX91091.1| SurA N-terminal domain family [Alcanivorax sp. DG881]
          Length = 442

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/475 (13%), Positives = 145/475 (30%), Gaps = 86/475 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S         + +  Q+ G  +         + +++LD +V     
Sbjct: 42  DRIVAVVNDGAIMASELDERI-NTIALQFQEKGQQLPPPAV----MREQVLDRMVLERLQ 96

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G++ D   +   +A       + N  S + F + L ++G +  ++     + +
Sbjct: 97  LQLAERGGIKVDDASLNQALAGI----ARQNGMSLEDFAAALRQDGYDWPQF----REQI 148

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
               V+                      + RSV           +    ++  + ++   
Sbjct: 149 REDMVISRL-------------------QQRSV----------ASRIQVTDREVDRFLSS 179

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                   E   + +IL  V  +    +++                              
Sbjct: 180 ELGKQMFQEDFHLGHILVRVPAEASPEDVTQA---------------------------- 211

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           + +A+   + L  G  F QLA  +    K+L    LGS      P +   ++I    +KG
Sbjct: 212 RSKAESIVKKLNDGGDFQQLAVAESDGPKALEGGDLGSRPAAQWPTLFAENAIN--LQKG 269

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTV--SFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           + +  +    G+ I  + + K       +  +V+  +     +T A +  K+  +  +E 
Sbjct: 270 EISEPLRSGAGFHILKMIDRKGGSEKVVTQYQVRHVLIKTDALTSAEQAHKQAIRLHDEI 329

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
            A      + +                G   KG+ V          F     + P+ +  
Sbjct: 330 AAGERQFSDTAAEFSDDPGSARSGGELGWVNKGEMVPE--------FEDMMLNTPVGELS 381

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
            V      + ++++ +   A D   E       +  +  +  EE+ +   +   E
Sbjct: 382 PVFESQFGWHFLRVDDVRDA-DMSAEFRRMQATQALQKRRFEEELETWVQEKRSE 435


>gi|192361586|ref|YP_001982980.1| peptidyl-prolyl cis-trans isomerase D [Cellvibrio japonicus
           Ueda107]
 gi|190687751|gb|ACE85429.1| peptidyl-prolyl cis-trans isomerase D [Cellvibrio japonicus
           Ueda107]
          Length = 270

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 65/161 (40%), Gaps = 19/161 (11%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEAD-----EAFQSLKKGKK 295
           + +  ++  Y +++ +Y S        ++          +++A      E +  L+KG+ 
Sbjct: 108 VDDAAVRNYYAEHQGQYESS-RVHAAHILVRIDPTMGETERQAKLSTAHEIYSRLQKGED 166

Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+   +          LG  ++  + D   +  +FS+ K G+ +  +   FG+ + 
Sbjct: 167 FADLAKSYSEDKVSGEKGGDLGWLAEGAV-DPEFSKKLFSM-KPGEISEPLITPFGFHVV 224

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +     +   S + V+ +I  Q+R    + + +     ++
Sbjct: 225 KMLEGPQTIKRSLESVEGEIRYQLRNQAKATETERLVNTVK 265


>gi|271502081|ref|YP_003335107.1| Peptidylprolyl isomerase [Dickeya dadantii Ech586]
 gi|270345636|gb|ACZ78401.1| Peptidylprolyl isomerase [Dickeya dadantii Ech586]
          Length = 430

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/402 (13%), Positives = 128/402 (31%), Gaps = 63/402 (15%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           + + +V    V   S INS  Q + + +Q+ G  +         L  +IL+ L+    + 
Sbjct: 26  NKIAAVVDNSVVLESDINSLLQSVKLNAQEAGQQLP----DDATLRHQILERLIMDNIIM 81

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q  + +G++    ++   I          N  S D   SRLA EG++   Y     K + 
Sbjct: 82  QMAQKMGVQVTDEQLDRSITNIAA----QNHMSLDQLRSRLAAEGVSFDTYRSQIRKDMM 137

Query: 161 RTDVVGM-FVGGMRPSNLLLDQAKR-FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
             DV        +      +D   +    +  +   + L+   +P   +P+   + +  E
Sbjct: 138 IADVRNSEVRRRVTVLPQEVDALAQQLASQGANGPEVNLSQILIPLPENPTQDQVDK-AE 196

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEIS--------NDELQAEYEKNKEKYFSPE-- 268
              +       +   +    +        +           EL + + +        +  
Sbjct: 197 SLANRLVKEASQGADFGKLAITYSADPQALKGGQMGWGRPQELPSLFAERLANPQKGQII 256

Query: 269 ---------------------------IRTVEQLVFPN---------QKEADEAFQSLKK 292
                                            ++            + + +E    ++ 
Sbjct: 257 GPIRSGVGFHILRVNDTRGGSQAVSVTEVHARHILLTTSVVMNDAQAKAKLEEVASQIRS 316

Query: 293 GK-KFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           GK  F   A++  +     + G    ++   + D +  D++  L KKG+ +  +H SFG+
Sbjct: 317 GKLSFAAAAKQLSQDPGSANQGGDLGWASPDMYDPAFRDALMDL-KKGEISAPVHSSFGW 375

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            +  + + +     +    K      +   K +E+ +   + 
Sbjct: 376 HLIQLLDTR-QVDKTDAAQKDRAYRMLFNRKFAEEAQTWMQE 416


>gi|170699177|ref|ZP_02890230.1| SurA domain [Burkholderia ambifaria IOP40-10]
 gi|170135902|gb|EDT04177.1| SurA  domain [Burkholderia ambifaria IOP40-10]
          Length = 452

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/410 (12%), Positives = 120/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 40  DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERIQ 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D   V   + R      + N  + + + +RL  +G+    +       L
Sbjct: 95  VQKAKDDGIRIDDATVQSTLQRL----AQANGMTLEQYRARLEAQGVPWSVFTSDARTEL 150

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDY----IVLNNRHVPAIADPS 209
             + +    V G +  S+  +             + + + +    I        A  + +
Sbjct: 151 MLSKLREREVDGKITVSDAEVVNYIASQRGPSASQQQDLRFQHIFIKAPTNAPQAEIEVA 210

Query: 210 NAVLTQWF-----------------EKYKDN------YRAP-----EYKRISYILFDVHE 241
                                    E           ++AP     E    +  L     
Sbjct: 211 QKKAEALLQQATFGADFEKLAKNNSEANDAKKGGDLGFKAPGALPPEVVDAASKLRPGQV 270

Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286
               I + +  E+    ++ + +  S          V  ++            +++  + 
Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDI 330

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 331 RRQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPVR 388

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V + + S   S Q+        +   KA +   +  + L +
Sbjct: 389 TEYGYHLIQVIDRRESEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437


>gi|89067389|ref|ZP_01154902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanicola
           granulosus HTCC2516]
 gi|89046958|gb|EAR53012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanicola
           granulosus HTCC2516]
          Length = 280

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 63/165 (38%), Gaps = 6/165 (3%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQ 303
           +  +S + LQA YE                ++   ++EA    +  +  G  F +LA E 
Sbjct: 109 EEAVSEEALQAAYEARFADAEPQTEYNASHILVETEEEAVALTEQARAEGADFAELAREN 168

Query: 304 GKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
               S      LG F +  +      D++ +L + GD +  +   FG+ +  ++  + S 
Sbjct: 169 STGPSGPAGGELGWFGEGMMV-QEFYDAVVAL-EPGDVSEPVQTQFGWHVIKLNETRLSE 226

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
               + ++ ++ ++++     + + E     +       + D  +
Sbjct: 227 VPPLESLRGELTSELQQQAVEDALAELEAGADVTRPEQGAFDPAA 271


>gi|189485156|ref|YP_001956097.1| rotamase surA-like protein [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|189485167|ref|YP_001956108.1| rotamase surA-like protein [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287115|dbj|BAG13636.1| rotamase surA-like protein [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287126|dbj|BAG13647.1| rotamase surA-like protein [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 351

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/373 (14%), Positives = 116/373 (31%), Gaps = 62/373 (16%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSG-SSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
            K F  VL V F I G+     +      T+  V  + +    F +   +    +   + 
Sbjct: 1   MKKFFSVLAVTFFIVGVGSIFAAPKKVDQTLAIVNGKPI----FESEVNKVFNNLKSDML 56

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                   +   L  +IL+  +    L   I+   +      V   I        K++  
Sbjct: 57  ASEQWSEQKINELKNRILERQIDSILLKNEIKKQKILVSRKEVLEYIKEL----KKNHAI 112

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
             +     L+++ +  K+     ++++    ++G  +                       
Sbjct: 113 DEE-----LSKQNLTYKDLEKSVSEIIRFMKLLGKILD---------------------- 145

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE---YKRISYILFDVHEKEKKIEIS 249
                           + A +  +++K     +            +   V ++ KK+   
Sbjct: 146 ----------VNAEKITEAEIKSFYDKVIIKMKGGNPGLSHDKDCLAASVADELKKVFSE 195

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
           N  ++  + KN +     E + V+  V   +KE           K F ++A +  + L  
Sbjct: 196 NVRIKQIFIKNPKGTQDAETQVVQSKVETVKKELQV--------KSFAEVARKYSEDLIS 247

Query: 310 ----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 LG F  +    + L  ++FS+         I    GY    +    P+  + F 
Sbjct: 248 KSRNGDLGIFVVKGDLPLVLEKAVFSMKVGDYTKEPIKTDIGYYFIKLEEKLPNRKIVFD 307

Query: 366 -EVKKDIANQMRI 377
            +VK  I +++  
Sbjct: 308 GKVKDYINSRLLQ 320


>gi|283850614|ref|ZP_06367901.1| SurA domain protein [Desulfovibrio sp. FW1012B]
 gi|283573857|gb|EFC21830.1| SurA domain protein [Desulfovibrio sp. FW1012B]
          Length = 330

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/368 (12%), Positives = 106/368 (28%), Gaps = 91/368 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +            L       G  +  +  ++  L +++L+++++   +
Sbjct: 28  DKVVAVVNGKLITMFDVNARLADLLQRTQ---GVSMRPDDPQAAELRRQVLESMINDILI 84

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +Q    + +      +  +I        K N  +   FV+ L +EG+  K++ +      
Sbjct: 85  EQEAARLKVSISETELDSQIDEI----KKKNNLTQQQFVAELNKEGMTLKDFRERMRLDS 140

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            +  ++G                                   V      ++  +  ++EK
Sbjct: 141 VKKRLLGFM---------------------------------VHRKVLVTDDEIRDYYEK 167

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            K     P  K I                                      T+  ++   
Sbjct: 168 NKGA--LPTAKSILGPKVSG-------------------------------TIGFIMVAT 194

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
           +K+AD+    +  G  KF   A++            LG    + +    L D++ S+   
Sbjct: 195 KKQADDLRAQITSGSLKFSDAAKKYSIGPGRDQGGDLGDVQAKDLA-PPLRDALKSVP-A 252

Query: 336 GDFTPVIHGSFGYVIAHV------------SNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           G  +P +      V+  +                P+   SF+  +  I   +   K  + 
Sbjct: 253 GQVSPPVMLDGKAVLLVLRTGAASTPAPAAPAPTPAGGPSFEGARDQIQEMLYKQKFDKL 312

Query: 384 VKEDYKRL 391
            +E    L
Sbjct: 313 FQEYIDNL 320


>gi|320450789|ref|YP_004202885.1| peptidyl-prolyl cis-trans isomerase [Thermus scotoductus SA-01]
 gi|320150959|gb|ADW22337.1| peptidyl-prolyl cis-trans isomerase [Thermus scotoductus SA-01]
          Length = 307

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 6/148 (4%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                ++++S   L+A +     +Y  P +     ++ P  + A E    L KG+ F Q+
Sbjct: 146 AHYRTELKVSPAALKALWLL-SPEYRHPALYCARHILVPTLEAAKEVLARLAKGEAFAQV 204

Query: 300 AEEQGKSLSDISLGSF---SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A E  +       G       E     +   ++ +L K G+ +P +   FG+ +  +  +
Sbjct: 205 AREVSQDPGSKEAGGDLGCEPEGTYIPAFEKALLAL-KPGEVSPPVGTEFGFHVILLERL 263

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKV 384
            P      +EV +++A  ++  KA E++
Sbjct: 264 VPPGRYPLEEVAEELAQGVK-DKAWERL 290


>gi|170691413|ref|ZP_02882578.1| SurA domain [Burkholderia graminis C4D1M]
 gi|170143618|gb|EDT11781.1| SurA  domain [Burkholderia graminis C4D1M]
          Length = 453

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/413 (13%), Positives = 127/413 (30%), Gaps = 74/413 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            +    V    +               ++Q+   +  +++     L +++L+ +V     
Sbjct: 42  DTIAAVVNNGVITRRELEERVSLITRRLNQQNAPIPPADQ-----LRQQVLNQMVLERIQ 96

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G+  D   V   + R      + N  S DV+ +R+  +G+    +       L
Sbjct: 97  LQKAKEDGINIDDAAVQKTLERL----AQANNLSLDVYRARIEAQGVPWTTFTSDARTEL 152

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENR----------SVDYIVLNNRHVPAIADP 208
           + + +    V   +  S+  +     +    R           +++I+L         D 
Sbjct: 153 TLSRLREKEVDSKVTVSDAEV---ANYIASQRGPNAGATSDLHLEHILLKAPLNAPQPDI 209

Query: 209 SNAVLTQ------------WFEKYKDNYRAP------------------EYKRISYILFD 238
             A                + +  K N +AP                  E+ + +  L  
Sbjct: 210 EAAQKKAEALLAEAKGGANFEKLAKSNSQAPDASKGGDMGYAAPSKLPPEFVKAASALRP 269

Query: 239 VHEKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEA 283
                + I  S+  E+    ++   +  S +        V  ++            +++ 
Sbjct: 270 GQVNPEVIRTSDGFEVVRLVDRRAGQGTSSDAPKLVQTHVRHILLRVGDGMSEPQARQKL 329

Query: 284 DEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
            E  + +  G  F + A    + G S     LG  S           ++ SL + G  + 
Sbjct: 330 LEIRKEIAAGGDFSKFASTYSQDGSSSQGGDLGWISPGETV-PEFERAMNSL-QDGQISD 387

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            +   +GY +  V   + +   S  +        +   KA +   +  + L +
Sbjct: 388 PVRSEYGYHLIQVLERREAQG-SIAQQMDLARQAIGQRKAEQAYADWLRELRD 439


>gi|114570817|ref|YP_757497.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
           MCS10]
 gi|114341279|gb|ABI66559.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
           MCS10]
          Length = 317

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 6/155 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EE 302
            ++++ +Q  YE+        E      ++   Q+EA      + +G+ F +LA    E+
Sbjct: 134 AVTDETIQRIYEEQVRLIPLGEEVRARHILVQTQEEAVAIKALIDQGRDFAELAVAMSED 193

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           Q   L    LG FS+E I   +     F+   +G  +      FG+ +  V + +     
Sbjct: 194 QATRLEGGDLGYFSREGIL-PAFGAVAFA-TPEGAVSEPFRTEFGWHLLTVVDRRRQPPP 251

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
           S + ++ +IA      +    +     + E   A 
Sbjct: 252 SLESLRPNIARFYTFDQLEALIDGLRDQAEIERAD 286


>gi|323524758|ref|YP_004226911.1| SurA domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323381760|gb|ADX53851.1| SurA domain protein [Burkholderia sp. CCGE1001]
          Length = 468

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/413 (11%), Positives = 123/413 (29%), Gaps = 74/413 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            +    V    +               ++Q+   +  +++     L +++L+ +V     
Sbjct: 57  DTIAAVVNNGVITRRELDERVNLITRRLNQQNAPIPPADQ-----LRQQVLNQMVLERIQ 111

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G+  D   V   + R      + N  S DV+ +R+  +G+    +       L
Sbjct: 112 LQKAKEDGINVDDAAVQKTLERL----AQANNLSLDVYRARIEAQGVPWATFTSDARTEL 167

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD------------YIVLNNRHVPAIA 206
           + + +    V   +  S+  +     +    R  +            ++           
Sbjct: 168 TLSRLREKEVDSKVTVSDAEV---ANYIASQRGPNAGATSDLHMEHIFLKAPLNAPQTDI 224

Query: 207 DPSNAVLTQWFEKYK--DNY--------------------------RAPEYKRISYILFD 238
           + +         + K   N+                            PE+ + +  L  
Sbjct: 225 EAAQKKAEALLAEAKGGANFGKLAKSNSQAPDAAKGGDMGYAAPSKLPPEFVKAASALRP 284

Query: 239 VHEKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEA 283
                + I  ++  E+    ++   +  S +        V  ++            +++ 
Sbjct: 285 GEVNPEVIRTNDGFEVVRLVDRRAGQGTSSDAPKLVQTHVRHILLRVGDGMSEPQARQKL 344

Query: 284 DEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
            E  + ++ G  F + A    + G S     LG  S           ++ +L + G  + 
Sbjct: 345 LEIKKEIQAGGDFAKFAHTYSQDGSSSQGGDLGWISPGETV-PEFERAMNTL-QDGQISD 402

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            +   +GY +  V   + +   S  +        +   KA +   +  + L +
Sbjct: 403 PVRSEYGYHLIQVLERREAQG-SIAQQMDLARQAIGQRKAEQAYADWLRELRD 454


>gi|160896759|ref|YP_001562341.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
 gi|160362343|gb|ABX33956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
          Length = 311

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 67/165 (40%), Gaps = 11/165 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGK 294
            +       +  + +  Y+ + E++   E   V  ++        + +A++    L+ G 
Sbjct: 128 ADNTPSAAAAEGQARNIYKAHPERFAVEEQVHVRHILIAGTDDAARAQAEKLVAELRGGA 187

Query: 295 KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            F  LA+E    +G +     LG F K+ +       + F+L KK + +  +   FG+ +
Sbjct: 188 DFAALAKERSADKGSAARGGDLGFFGKDKMV-PEFEQAAFAL-KKNEISGAVQSKFGFHV 245

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
             + + KP+   SF EV++ +  ++     +E        + +  
Sbjct: 246 LQLLDRKPAGQQSFSEVREALVKEVIEQAQAEGRVAAANAIRKEF 290


>gi|300114915|ref|YP_003761490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           watsonii C-113]
 gi|299540852|gb|ADJ29169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           watsonii C-113]
          Length = 304

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 14/158 (8%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--------ADEAFQ-SLKKGKKFIQLA 300
               +  Y+ N EKY  PE   V  ++   ++         A++  Q +L   K F +LA
Sbjct: 128 EALARERYQANPEKYQQPERVKVSHILIKPEERSEEEARELAEQVRQLALTDEKPFSELA 187

Query: 301 EEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +  +  S       LG  +K  +   S  ++ F+L + G  +PV+   FG+ I  +   
Sbjct: 188 LQYSEDPSLEKNKGDLGFIAKG-MTTQSFEEAAFALEQPGAISPVVKSRFGFHIIRLEER 246

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +   T SF EVK+ +   ++ T  ++ V+    ++   
Sbjct: 247 QAPKTKSFAEVKESLVEDIKATHLNQVVQTHLNQIRNA 284


>gi|172061669|ref|YP_001809321.1| SurA domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171994186|gb|ACB65105.1| SurA domain protein [Burkholderia ambifaria MC40-6]
          Length = 452

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/410 (11%), Positives = 121/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 40  DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERIQ 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D   V   + R      + N  + + + +RL  +G+    +       L
Sbjct: 95  VQKAKDDGIRIDDATVQSTLQRL----AQANGMTLEQYRARLEAQGVPWSVFTSDARTEL 150

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDY----IVLNNRHVPAIADPS 209
             + +    V G +  S+  +             + + + +    I        A  + +
Sbjct: 151 MLSKLREREVDGKITVSDAEVVNYIASQRGPSASQQQDLRFQHIFIKAPTNAPQAEIEVA 210

Query: 210 NAVLTQWFEKYKDN-----------------------YRAP-----EYKRISYILFDVHE 241
                   ++                           ++AP     E    +  L     
Sbjct: 211 QKKAEALLQQATSGADFEKLAKNNSEANDAKKGGDLGFKAPGALPAEVVDAASKLRPGQV 270

Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286
               I + +  E+    ++ + +  S          V  ++            +++  + 
Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDI 330

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 331 RRQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPVR 388

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V + + S   S Q+        +   KA +   +  + L +
Sbjct: 389 TEYGYHLIQVIDRRESEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437


>gi|149202954|ref|ZP_01879925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp.
           TM1035]
 gi|149143500|gb|EDM31536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp.
           TM1035]
          Length = 283

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 6/176 (3%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E +R + +  DV E+    +++ + LQA Y+                ++   ++ A    
Sbjct: 96  ENERRAVLAADVAEEVVNADLTEERLQAAYDAQYAGAEDETEYKAAHILVETEEAAQNLV 155

Query: 288 QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
             L+ G  F  LA+E        S   LG F    +       +  +    G  +  I  
Sbjct: 156 IELEGGANFAALAQEHSIGPSGPSGGDLGWFGDGVMVPEFF--AAVAALDVGAVSAPIQT 213

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
            FG+ +  ++  +     +   V+ ++ N +R   A +      +   E +   T+
Sbjct: 214 QFGWHVIQLNETRIKERPTLDGVRDELTNTLRQE-AFDAFIAAREAATEVIRTDTT 268



 Score = 37.3 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 66/197 (33%), Gaps = 9/197 (4%)

Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
           K V     +++LL +    D   +    +     + +   + E +   D   E +     
Sbjct: 67  KGVLDQLIQQELLSQAHEGDLSRAAALQLENERRAVLAADVAEEVVNADLTEERLQAAYD 126

Query: 488 KDWKTVKTAEEVSS--------KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
             +   +   E  +        +A Q ++   + G NF  + +         +  +    
Sbjct: 127 AQYAGAEDETEYKAAHILVETEEAAQNLVIELEGGANFAALAQEHSIGPSGPSGGDLGWF 186

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
            +     +  + V +  V  V   PI+    + V ++  +++      D     LT  + 
Sbjct: 187 GDGVMVPEFFAAVAALDVGAV-SAPIQTQFGWHVIQLNETRIKERPTLDGVRDELTNTLR 245

Query: 600 KDLLDSVIAYLKSQYSV 616
           ++  D+ IA  ++   V
Sbjct: 246 QEAFDAFIAAREAATEV 262


>gi|182417449|ref|ZP_02948776.1| peptidil-prolyl cis-trans isomerase [Clostridium butyricum 5521]
 gi|237665664|ref|ZP_04525652.1| peptidil-prolyl isomerase family protein [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182378618|gb|EDT76145.1| peptidil-prolyl cis-trans isomerase [Clostridium butyricum 5521]
 gi|237658611|gb|EEP56163.1| peptidil-prolyl isomerase family protein [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 252

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
           R  E ++       + +   K  I+ +E    Y  NKEK+   E+ +V+ ++  +Q+EA 
Sbjct: 71  RIEEARKDILTQMGISKAAGKESINENEALDYYNSNKEKFIIGEMVSVKHILVESQEEAY 130

Query: 285 EAFQSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                ++  +  F   A +      +++  SLG+F +  +   S  ++ F+ AK    T 
Sbjct: 131 NVKNEIENNQISFSDAALKYSMCPSNMNGGSLGTFGRGKLT-ASFEEAAFN-AKINILTD 188

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
            +   FG+ I  V + +  +   F +VK++I   ++  
Sbjct: 189 PVETEFGFHIILVEDFRDEYIKDFDDVKEEIMLHLKKK 226


>gi|227327727|ref|ZP_03831751.1| peptidyl-prolyl cis-trans isomerase SurA [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 431

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/398 (16%), Positives = 129/398 (32%), Gaps = 65/398 (16%)

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           NS  Q + + +Q+ G  +         L  +I D L+    + Q  + +G++    ++  
Sbjct: 43  NSLLQSVKLNAQQAGQQLP----DDATLRHQITDRLIMDNIILQMAQKMGIQVTDEQLDQ 98

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-----RTDVVGMFVGGM 172
            I          N+ S D   S+LA EG+N   Y +   K +        +V        
Sbjct: 99  AITNIAA----QNRMSLDQLKSQLAYEGLNYSTYRNQIRKEMLISEVRNNEVRRRITVLP 154

Query: 173 RPSNLLLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAV-LTQWFEKYKDNYRAPEY 229
           +  + L  Q      EN  ++   I++     P       A  L     K  +       
Sbjct: 155 QEVDTLAKQIATQTGENDELNLSHILIPLPENPTQQQVDEAENLATSLVKQINEGADFGK 214

Query: 230 KRISYILFDVHEKEKKIEISN-DELQAEYEKNKEKYFSPEIR------------------ 270
             I+Y       K  ++      E+   + +   +    ++                   
Sbjct: 215 LAITYSADSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIR 274

Query: 271 -----------TVEQLVFP---------NQKEADEAFQSLKKG-KKFIQ----LAEEQGK 305
                          ++            Q +  E  Q +K G   F      L+++ G 
Sbjct: 275 GGNKSVSVTETHARHILIKPSVVMTDSQAQAKLAEVAQQIKNGSTDFASQAKLLSQDPGS 334

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS-- 363
           +     LG  S + + D +  D++  L KKG+ +  +H SFG+ +  + + +        
Sbjct: 335 ANQGGDLGWASPD-MYDPAFRDALLKL-KKGEISQPVHSSFGWHLIQLLDTRQVDKTDAA 392

Query: 364 -FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
             ++  + I N+    +A   ++E        +  G S
Sbjct: 393 QKEQAYRMIFNRKFAEEAQTWMQEQRAAAYVKVINGAS 430



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 111/329 (33%), Gaps = 34/329 (10%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
            S L    +N ++         +   +       +   N++L  A++   +  + + +  
Sbjct: 43  NSLLQSVKLNAQQAGQQLPDDAT---LRHQITDRLIMDNIILQMAQKMGIQ-VTDEQLDQ 98

Query: 198 NNRHVPAIADPSNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              ++ A    S   L     +       YR    K +       +E  ++I +   E+ 
Sbjct: 99  AITNIAAQNRMSLDQLKSQLAYEGLNYSTYRNQIRKEMLISEVRNNEVRRRITVLPQEVD 158

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAF-------QSLKKGKKFIQLAEE 302
              ++   +    +   +  ++ P      Q++ DEA        + + +G  F +LA  
Sbjct: 159 TLAKQIATQTGENDELNLSHILIPLPENPTQQQVDEAENLATSLVKQINEGADFGKLAIT 218

Query: 303 QGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                  +  G      + +  +L     + A+KG     I    G+ I  V++I+    
Sbjct: 219 YSADSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIR-GGN 277

Query: 362 VSFQEVKKDIANQMRI-------TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
            S    +    + +         ++A  K+ E  ++++     G++  + + + K++S D
Sbjct: 278 KSVSVTETHARHILIKPSVVMTDSQAQAKLAEVAQQIKN----GST--DFASQAKLLSQD 331

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
               +  G           P     L ++
Sbjct: 332 PGSANQGGDLGWASPDMYDPAFRDALLKL 360


>gi|302338344|ref|YP_003803550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635529|gb|ADK80956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 511

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/507 (13%), Positives = 159/507 (31%), Gaps = 95/507 (18%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
            LV++ V F+         S  GS    S   + + +    N   ++  M++++   +  
Sbjct: 35  ILVLIVVTFVGAPAISHFGSQRGSIVFGSWNGEPIEYRP-DNYLSRQRDMVAKRYQAMFQ 93

Query: 77  SERARSVGLDKKILD------NL-VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
             + +   +D ++         L V  + + +  +  GL+    RV   +     +  ++
Sbjct: 94  QSQGQD-NIDWQLFQVWNGAFELTVIHSAIMEEAQKSGLQVSDERVDRALTYYEGY-WEN 151

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
            KFS + + +  + E  + + Y   Y + L     V         S+             
Sbjct: 152 GKFSPEAYRNTSSSEKFSVRNY---YHESLIHQQWVSDVF-STHSSSAEKAFLLSLASPE 207

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           R+  ++  +    PA        + ++  +  D +    + RIS                
Sbjct: 208 RNFRFVNWDLNSYPA------EKVAEYGRQTGDLFAEGSFSRIS---------------- 245

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSL- 307
                                     +  ++K A+   + L++    F +LA      + 
Sbjct: 246 --------------------------LKDDKKSAEAVLKQLREETSTFEELATAHSTDIY 279

Query: 308 --SDISLGSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                 +G   +      I +    D +FSLA  G+ + ++   +G+ I   +   P   
Sbjct: 280 ADKGGEMGYVMRYALQSDISNDKDLDEVFSLA-PGEASGLVETPYGWAIYRSNG--PIRD 336

Query: 362 VSF--QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
             F   E    + + M +      V++ +  L +           S     + +   L D
Sbjct: 337 ADFTNDETIDKVRSYMLVND-RGIVEDYFLDLGKTFGESAEKSSFSETSDTMGLTEHLTD 395

Query: 420 FAGKDV-------------KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
           +   +                  + +I   +++L  +F  + P        + +   ++ 
Sbjct: 396 YFPINFGSVGFLKVIRTLDNSNYLQSIGSNDRILKLLFSLE-PEGVSEPQVVGNSVIVFQ 454

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTV 493
            I E    +      V   + + +++V
Sbjct: 455 MIDERDAPQT-----VKDTIDQRYRSV 476


>gi|329767659|ref|ZP_08259179.1| hypothetical protein HMPREF0428_00876 [Gemella haemolysans M341]
 gi|328839086|gb|EGF88672.1| hypothetical protein HMPREF0428_00876 [Gemella haemolysans M341]
          Length = 312

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 97/297 (32%), Gaps = 87/297 (29%)

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
           E   +  L K     ++    LD++   I  +    ++            +      D F
Sbjct: 45  ESIGASQLSKTATSMMIQKVLLDKYKNKIDQKTIDEQLQKA-------QEQYGG--KDKF 95

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
              L ++G    +Y D      ++T ++  + G                           
Sbjct: 96  EQLLKQQGFTLDKYKDGLKVKAAQTLLINDYAGT-------------------------- 129

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                      ++  L + +EK K  Y       +++IL  V  +     +S++E     
Sbjct: 130 -----------NDDKLKESYEKNKHQY------HLAHILVSVKSESNPNGLSDEE----- 167

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLG 313
                                 +K+A+E  + LK G  F  LA+E         +   LG
Sbjct: 168 ---------------------AKKKAEEVLKKLKDGGDFATLAKENSNDTANASNGGDLG 206

Query: 314 SFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             SKE         D+ ++L+K    + V+  SFGY I  V + K S   SF E+K 
Sbjct: 207 WSSKEDNSFVKEFKDAAYALSKD-KTSDVVKTSFGYHIIKVLDEKDS---SFDELKP 259


>gi|256828792|ref|YP_003157520.1| SurA domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256577968|gb|ACU89104.1| SurA domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 305

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/369 (11%), Positives = 109/369 (29%), Gaps = 87/369 (23%)

Query: 23  VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
           + F++ GL  A   V     V  V  + + F       +  +G            + A +
Sbjct: 14  LFFVLAGLGQAAQLV--DRIVAVVNGEIITFQDLQQQIRLSVGQ---------TPDPATA 62

Query: 83  VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142
             +  ++LD ++    L Q  + + +E     V  EI +         + S + F   L 
Sbjct: 63  EKIAPQVLDGMIDDVILRQEAQRLKIEVSDSEVDNEIRQFKA----RRRLSEEDFERTLR 118

Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
            +G+  +++ +   + +++  ++G                                   V
Sbjct: 119 LQGLTPEQFKERSREDITKHKMLGYM---------------------------------V 145

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                 +   +  + E+ +          +  ++           +  +   + ++    
Sbjct: 146 RRKVVVTQEEIDAYMEQNRSELTTERIVDVQMLVL----------VDEERANSLWKS--- 192

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
                        +   +   +EA +    G K         + +S   L    ++ + +
Sbjct: 193 -------------LSEGEVSLEEAVERYSIGPKAENGVM---RDVSWRELAEPWRDGLRN 236

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           +S           G+ +        +VI  + + +         V++++   +   K  E
Sbjct: 237 LSA----------GELSKPFLVQDKWVILKLLDRRDGVRQEDAAVEEEVREAIMRPKLEE 286

Query: 383 KVKEDYKRL 391
           + KE    L
Sbjct: 287 RFKEYMNGL 295


>gi|269837477|ref|YP_003319705.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786740|gb|ACZ38883.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 473

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/388 (11%), Positives = 111/388 (28%), Gaps = 49/388 (12%)

Query: 40  SSTVVSVGRQKVPFSSF----INSWKQELGMISQKIGFVVNSERARSVGLDKKI------ 89
           + T+ SV   ++  + +          ++    Q   F    +  +   L ++       
Sbjct: 42  NQTLASVNGVEIKRADYWKMRKLELLNQIQQYVQIAQFSQGEQAVQYQQLAEQAQARLRT 101

Query: 90  ----------LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD---- 135
                     +  +V    + Q +E +GL      V         F   +   S      
Sbjct: 102 VESDPVESTTVSQMVDDQVVLQRLETLGLSVTDADVEQT---MEQFFSPEPSASPTPTLG 158

Query: 136 ------VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
                  + +  A   +             +  +           ++   +++     E 
Sbjct: 159 VDPTAAAWATATAEAQVTPTPESTPEATPEATEEAESATPAASPTADGEDEESSAASPEA 218

Query: 190 RSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
                        P      S   +          ++  +   +        +  + + +
Sbjct: 219 AEDATPEATPEGTPEPTPTLSPDQVQA---TATATFQQYKRNVLDEAGMSEEDFRRLVVL 275

Query: 249 SNDELQAE-YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS- 306
                Q   Y   ++     E      ++   +  A    + L++G  F +LA+EQ    
Sbjct: 276 PEAARQKVVYALQEKIPTRAEQVHAAHILVATEDAAKAIEEQLRQGADFAELAKEQSADS 335

Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
              ++   LG F +  + +    +  FSL + G+ +  +   FG+ I  V   +    V 
Sbjct: 336 ATAVNGGDLGWFPRGLMVEP-FEEVAFSL-EPGEISAPVQTQFGWHIITVFEKEADRPVD 393

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391
            + +       +R  + S+ ++E    +
Sbjct: 394 VETL-----QTLRNQQFSKWLEEQRAAV 416


>gi|171317315|ref|ZP_02906511.1| SurA domain [Burkholderia ambifaria MEX-5]
 gi|171097514|gb|EDT42352.1| SurA domain [Burkholderia ambifaria MEX-5]
          Length = 452

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/410 (11%), Positives = 121/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 40  DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERIQ 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D   V   + R      + N  + + + +RL  +G+    +       L
Sbjct: 95  VQKAKDDGIRIDDATVQSTLQRL----AQANGMTLEQYRARLEAQGVPWSVFTSDARTEL 150

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDY----IVLNNRHVPAIADPS 209
             + +    V G +  S+  +             + + + +    I        A  + +
Sbjct: 151 MLSKLREREVDGKITVSDAEVVNYIASQRGPSASQQQDLRFQHIFIKAPTNAPQAEIEVA 210

Query: 210 NAVLTQWFEKYKDN-----------------------YRAP-----EYKRISYILFDVHE 241
                   ++                           ++AP     E    +  L     
Sbjct: 211 QKKAEALLQQATSGADFEKLAKNNSEANDAKKGGDLGFKAPGALPAEVVDAASKLRPGQV 270

Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286
               I + +  E+    ++ + +  S          V  ++            +++  + 
Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDI 330

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 331 RRQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPVR 388

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V + + +   S Q+        +   KA +   +  + L +
Sbjct: 389 TEYGYHLIQVIDRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437


>gi|238786686|ref|ZP_04630487.1| Chaperone surA [Yersinia frederiksenii ATCC 33641]
 gi|238725054|gb|EEQ16693.1| Chaperone surA [Yersinia frederiksenii ATCC 33641]
          Length = 434

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/404 (14%), Positives = 128/404 (31%), Gaps = 66/404 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S      +  + + +Q+ G  V         L  ++L+ L+    L
Sbjct: 26  DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQQVP----DDGTLRHQVLERLIMDNIL 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+      +   IA         N+ + D   SRLA +G+N   Y +   K +
Sbjct: 81  LQMAKKMGITVSDEALDKAIADIAA----QNRMTPDQMRSRLAADGLNYNTYREQIRKEM 136

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217
             ++V        +      ++   +      S D  + L++  +P   +PS   + Q  
Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 195

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268
           E   +   +       +    +        +           EL + + +  +     + 
Sbjct: 196 EDLANKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSANKGDV 255

Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291
                                             ++            + +   A   +K
Sbjct: 256 VGPIRSGVGFHILKVNDIRGADKTVSVTEIHARHILLKPSPVMTDEQARAKLSAAAADIK 315

Query: 292 KGKK-FIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            GK  F  +A+E     G ++    LG  S + I D +  D++  L +KG+ +  +H SF
Sbjct: 316 SGKSSFATIAKEISQDPGSAMQGGDLGWASPD-IYDPAFRDAVMKL-QKGEISAPVHSSF 373

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+ +  V + +     +    K      +   K +E+ +   + 
Sbjct: 374 GWHLIQVIDNR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 416


>gi|312963417|ref|ZP_07777899.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas fluorescens
           WH6]
 gi|311282223|gb|EFQ60822.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas fluorescens
           WH6]
          Length = 444

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/413 (12%), Positives = 134/413 (32%), Gaps = 64/413 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S      K+    I+++ G V  +       LD+++L+ L+     
Sbjct: 32  DKVVAIVDNDVIMQSQLDQRVKEVQQTIAKRGGGVPPTSV-----LDQQVLERLIVENLQ 86

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   +        + N  S D F + LA +G++ ++  D   + +
Sbjct: 87  LQIGERSGIRISDEELNQAVGTI----AQRNNMSIDQFRAALAHDGLSYEDARDQIRREM 142

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAK-------RFYFENRSVDYIVLNNRHVPAIA-DPSN 210
             + V        ++ S   +           +   E    + ++       +   + + 
Sbjct: 143 IISRVRQRRVAERVQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPDSANSEQLNAAA 202

Query: 211 AVLTQWFEKYKD--NYR-----------APEYKRISYILFDVHEKEKKIEISNDE----- 252
           A     +E+ K   ++            A E   + +            E+S  E     
Sbjct: 203 AKTQAIYERLKAGADFAQMAIAQSGSDNALEGGDMGWRKAAQLPPPFDRELSAMEVGGIT 262

Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
                     +    E+   +    +   V  ++            ++ A + +  ++ G
Sbjct: 263 QPARTPGGFIILKLLERRGGETSLKDEVHVRHILVKPSEIRSEAQTKELAQKIYDRIQSG 322

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F  LA+    + G +L+   L     + +        + +   +G  +      +G+ 
Sbjct: 323 EDFATLAKSFSEDPGSALNGGDLNWIDPKALV-PEFQQ-VMADTPQGVLSKPFKTQYGWH 380

Query: 350 IAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +  V   + +   S  + ++  A + +R  K  E+++   +++ +   +   +
Sbjct: 381 VLEVLGRRATDNTS--QAREQQALSVLRNRKYDEELQTWLRQIRDEAYVENKL 431



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 68/198 (34%), Gaps = 25/198 (12%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----- 283
            + +           +++++S  E++     +  K    E   +  ++ P    A     
Sbjct: 139 RREMIISRVRQRRVAERVQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPDSANSEQL 198

Query: 284 -------DEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLA 333
                     ++ LK G  F Q+A  Q     +L    +G      +P       + ++ 
Sbjct: 199 NAAAAKTQAIYERLKAGADFAQMAIAQSGSDNALEGGDMGWRKAAQLP-PPFDRELSAM- 256

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASEKVK 385
           + G  T       G++I  +   +   T    EV          +I ++ +  + ++K+ 
Sbjct: 257 EVGGITQPARTPGGFIILKLLERRGGETSLKDEVHVRHILVKPSEIRSEAQTKELAQKIY 316

Query: 386 EDYKRLEEFLALGTSMDE 403
           +  +  E+F  L  S  E
Sbjct: 317 DRIQSGEDFATLAKSFSE 334


>gi|229010444|ref|ZP_04167648.1| Foldase protein prsA 1 [Bacillus mycoides DSM 2048]
 gi|228750864|gb|EEM00686.1| Foldase protein prsA 1 [Bacillus mycoides DSM 2048]
          Length = 289

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 86/242 (35%), Gaps = 31/242 (12%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I ++E+ +       +  +  M +             ++   +N  VD   ++ +     
Sbjct: 35  ITKEEFYNQMKTQAGKQVLNNMVM-------------EKVLIKNYKVDEKEVDKKFDEMK 81

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
               +     +    K      E  +         E+  +  I++ +L+A++E  K    
Sbjct: 82  KQVGDQ----FDTLMKQQGLKEETVKNGVRASLAQEQAIEKAITDKDLKAKFEDYK---- 133

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIP 321
             +      ++  +++ A +  + L +GK F +LA++  +          LG F  + + 
Sbjct: 134 --QEIKASHILVKDEETAKKVKEELAQGKSFEELAKKYSEDPGSKEKGGDLGFFGPDKMV 191

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                ++   L KK + +  +    GY I  V+        +F + K DI  ++   K  
Sbjct: 192 K-EFDEAARKL-KKDEVSEPVKTQHGYHIIKVTETHADA--TFDKAKADIKKEVVQEKTQ 247

Query: 382 EK 383
           + 
Sbjct: 248 DA 249



 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 43/222 (19%)

Query: 279 NQKEADEAFQSLKK--GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           ++KE D+ F  +KK  G +F  L ++QG     +  G  +              SLA++ 
Sbjct: 69  DEKEVDKKFDEMKKQVGDQFDTLMKQQGLKEETVKNGVRA--------------SLAQEQ 114

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
                               K       +   +D   +++ +    K +E  K+++E LA
Sbjct: 115 AI-----------------EKAITDKDLKAKFEDYKQEIKASHILVKDEETAKKVKEELA 157

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
            G S +E++++              G     K V       + L +    +   ++    
Sbjct: 158 QGKSFEELAKKYSEDPGSKEKGGDLGFFGPDKMVKEFDEAARKLKKDEVSEPVKTQ---- 213

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
                 Y  +++ E+    D   ++   D+KK+    KT + 
Sbjct: 214 ----HGYHIIKVTETH--ADATFDKAKADIKKEVVQEKTQDA 249


>gi|260642857|ref|ZP_05417609.2| peptidyl-prolyl cis-trans isomerase [Bacteroides finegoldii DSM
           17565]
 gi|260620246|gb|EEX43117.1| peptidyl-prolyl cis-trans isomerase [Bacteroides finegoldii DSM
           17565]
          Length = 713

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 93/723 (12%), Positives = 215/723 (29%), Gaps = 127/723 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     +  V  V    +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117
           +   ++    G    ++  ++  +  ++  + V+   +++  + +GL      +      
Sbjct: 61  EYTEVVKLMRGVNALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSTAEIQDILKA 119

Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-----------------AREGIN-------- 147
                + ++P F       F  D+    L                     +         
Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMNESQMPTQYAEQYNNMYKYWSFIQK 178

Query: 148 -------EKEYIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179
                   ++Y     K L    V                + G+  S+++          
Sbjct: 179 TLIQSRLAEKYQALVAKALLSNPVEAQDAFDARVNQYNVLLAGIPYSSVVDSTIVVKESE 238

Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224
                    +  + Y E R + YI +       +   +    D + A L    + Y   +
Sbjct: 239 LKELYNKKKEQFKQYQETRDIKYIDVQVTASPEDRAAIQKEVDEATAQLATTTDDYTS-F 297

Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267
                  + Y+    ++     ++     +  + A Y              K   K    
Sbjct: 298 IRSVGSDVPYVDLFYNKTAFPSDVVARLDSASVGAVYGPYYNGADNTINSFKIVAKAAVA 357

Query: 268 EIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319
           +     Q+          +  AD  + ++K G  F++LA++ G     + ++   +    
Sbjct: 358 DSVEFRQIQVYVEDALKTKTLADSIYNAIKDGANFVELAKKYGQTGDSNWLTAAQYEGAQ 417

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTV-SFQEVKKDIANQMR 376
           I   +L     S         +++   G   VI  V+N K          VK+++     
Sbjct: 418 IDGDNL--KFISAINNTGVNELVNLPMGQANVILQVTNKKAVKDKYKVAVVKREV----- 470

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
              + E     Y    +F+A   S++++    +     L  +D A  +     +  +   
Sbjct: 471 -EFSKETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRADLNSSEHGIGGVRGT 527

Query: 437 EQLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
           ++ L   F K +P          +    M V +    P   R L+ V   ++ +    K 
Sbjct: 528 KEALRWAFDKAEPGEVSGLYECGESDHMMVVGLVSIKPEGYRSLKSVQDQLRAEIVKDKK 587

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
           AE++ +           + K+  +   +    ++T      +           +    S 
Sbjct: 588 AEKIMADMKSANATSFDQYKSMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASV 644

Query: 556 PVEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
                   PI+      V +V    K+    +     + L  M  +     ++  L  + 
Sbjct: 645 AEMNKLSTPIKGNAGVFVLQVYGKDKLNETFDAKTEEATLANMHAR-FASRLMNDLYLKA 703

Query: 615 SVT 617
           +V 
Sbjct: 704 NVK 706


>gi|330955092|gb|EGH55352.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           Cit 7]
          Length = 440

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/426 (12%), Positives = 134/426 (31%), Gaps = 72/426 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 31  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH----- 154
            Q  E  G+      +   I        + N  S D F + LA +G++  +  +      
Sbjct: 86  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVDQFRAALAHDGLSYNDAREQVRREM 141

Query: 155 ------YTKMLSRTDVVGMFVGGMRPSNLLLDQA-KRFYFENRSVDYIVLNNRHVPAIAD 207
                   ++  R  V    V     S+L   Q  + F+  N  +      +        
Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDLGKAQLSEEFHLANILIAT---PDSASSDAIQ 198

Query: 208 PSNAVLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEIS 249
            + A     +++ K   ++                     ++ + +     +    + + 
Sbjct: 199 AAAAKAKAIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPVG 258

Query: 250 NDE----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQ 288
           +            +    EK   +  +   +   V  ++            ++ A + + 
Sbjct: 259 DVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEAETKRLAQKIYD 318

Query: 289 SLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            ++ G+ F +LA+    + G +L+   L       +        + S   +G+ +     
Sbjct: 319 RIQNGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMSETPQGELSKPFQT 376

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
            +G+ +  V   + +      + ++  A N +R  K  E+++   +++ +   +   +  
Sbjct: 377 QYGWHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPG 434

Query: 404 ISRREK 409
            ++  +
Sbjct: 435 ATQAAQ 440


>gi|315282338|ref|ZP_07870768.1| foldase protein PrsA [Listeria marthii FSL S4-120]
 gi|313614019|gb|EFR87733.1| foldase protein PrsA [Listeria marthii FSL S4-120]
          Length = 203

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 69/184 (37%), Gaps = 12/184 (6%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            + + Y L      E  +++S  +L+  Y+  +          V  ++  ++  A E   
Sbjct: 13  KENLEYNLLVQKATEANMDVSESKLKTYYKTWEPDIT------VRHILVDDEATAKEIQT 66

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGS 345
            LK G+KF  LA+E     +  + G     + P   D +   + ++L    D + ++  +
Sbjct: 67  KLKNGEKFADLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALKNTDDVSGIVKST 126

Query: 346 FGYVIAHVSNIKPSFT--VSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
           +GY +  +       T       VK   I +Q+     +  +K++ K     +      D
Sbjct: 127 YGYHLIQLVKKTEKGTYEKEKANVKAAYIDSQLTSENMTAALKKELKAANIDIKDSDLKD 186

Query: 403 EISR 406
             + 
Sbjct: 187 AFAD 190


>gi|261823065|ref|YP_003261171.1| peptidyl-prolyl cis-trans isomerase SurA [Pectobacterium wasabiae
           WPP163]
 gi|261607078|gb|ACX89564.1| Peptidylprolyl isomerase [Pectobacterium wasabiae WPP163]
          Length = 431

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/393 (15%), Positives = 123/393 (31%), Gaps = 66/393 (16%)

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           NS  Q + + +Q+ G  +         L  +I D L+    + Q  + +G++    ++  
Sbjct: 43  NSLLQSVKLNAQQAGQQLP----DDATLRHQITDRLIMDNIILQMAQKMGIQVTDEQLDQ 98

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-----RTDVVGMFVGGM 172
            I          N+ S D   S+LA EG+N   Y +   K +        +V        
Sbjct: 99  AITNIAA----QNRMSLDQLKSQLAYEGLNYNTYRNQIRKEMLISEVRNNEVRRRVTVLP 154

Query: 173 RPSNLLLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAV-LTQWFEKYKDNYRAPEY 229
           +  + L  Q      EN  ++   I++     P       A  L     K          
Sbjct: 155 QEVDTLAKQIANQTGENDELNLSHILIPLPENPTQQQVDEAENLATSLVKQISEGADFGK 214

Query: 230 KRISYILFDVHEKEKKIEISN-DELQAEYEKNKEKYFSPEIR------------------ 270
             I+Y       K  ++      E+   + +   +    ++                   
Sbjct: 215 LAITYSSDSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIR 274

Query: 271 -----------TVEQLVFP---------NQKEADEAFQSLKKG-KKFIQ----LAEEQGK 305
                          ++            Q +  +  Q +K G   F      L+++ G 
Sbjct: 275 GGNKSVSVTETHARHILIKPSVVMTDSQAQAKLADVAQQIKNGSTDFAAQAKLLSQDPGS 334

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           +     LG  S + + D +  D++  L KKG+ +  +H SFG+ +  + + +        
Sbjct: 335 ANQGGDLGWASPD-MYDPAFRDALLKL-KKGEISQPVHSSFGWHLIQLLDTRQVDKTD-- 390

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
                     R+    +  +E    ++E  A  
Sbjct: 391 --AAQKEQAYRMIFNRKFAEEAQTWMQEQRAAA 421



 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/329 (13%), Positives = 112/329 (34%), Gaps = 34/329 (10%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
            S L    +N ++         +   +       +   N++L  A++   +  + + +  
Sbjct: 43  NSLLQSVKLNAQQAGQQLPDDAT---LRHQITDRLIMDNIILQMAQKMGIQ-VTDEQLDQ 98

Query: 198 NNRHVPAIADPSNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              ++ A    S   L     +     + YR    K +       +E  +++ +   E+ 
Sbjct: 99  AITNIAAQNRMSLDQLKSQLAYEGLNYNTYRNQIRKEMLISEVRNNEVRRRVTVLPQEVD 158

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAF-------QSLKKGKKFIQLAEE 302
              ++   +    +   +  ++ P      Q++ DEA        + + +G  F +LA  
Sbjct: 159 TLAKQIANQTGENDELNLSHILIPLPENPTQQQVDEAENLATSLVKQISEGADFGKLAIT 218

Query: 303 QGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                  +  G      + +  +L     + A+KG     I    G+ I  V++I+    
Sbjct: 219 YSSDSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIR-GGN 277

Query: 362 VSFQEVKKDIANQMRI-------TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
            S    +    + +         ++A  K+ +  ++++     G++  + + + K++S D
Sbjct: 278 KSVSVTETHARHILIKPSVVMTDSQAQAKLADVAQQIKN----GST--DFAAQAKLLSQD 331

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
               +  G           P     L ++
Sbjct: 332 PGSANQGGDLGWASPDMYDPAFRDALLKL 360


>gi|115352813|ref|YP_774652.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
 gi|115282801|gb|ABI88318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
          Length = 452

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/410 (11%), Positives = 121/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 40  DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERIQ 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D   V   + R      + N  + + + +RL  +G+    +       L
Sbjct: 95  VQKAKDDGIRIDDATVQSTLQRL----AQANGMTLEQYRARLEAQGVPWSVFTSDARTEL 150

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDY----IVLNNRHVPAIADPS 209
             + +    V G +  S+  +             + + + +    I        A  + +
Sbjct: 151 MLSKLREREVDGKITVSDAEVVNYIASQRGPSAAQQQDLRFQHIFIKAPTNAPQAEIEVA 210

Query: 210 NAVLTQWFEKYKDN-----------------------YRAP-----EYKRISYILFDVHE 241
                   ++                           ++AP     E    +  L     
Sbjct: 211 QKKAEALLQQATSGADFEKLAKNNSEANDAKKGGDLGFKAPGALPAEVVDAASKLRPGQV 270

Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286
               I + +  E+    ++ + +  S          V  ++            +++  + 
Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDI 330

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 331 RRQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPVR 388

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V + + S   S Q+        +   KA +   +  + L +
Sbjct: 389 TEYGYHLIQVIDRRESEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437


>gi|319654014|ref|ZP_08008107.1| hypothetical protein HMPREF1013_04726 [Bacillus sp. 2_A_57_CT2]
 gi|317394336|gb|EFV75081.1| hypothetical protein HMPREF1013_04726 [Bacillus sp. 2_A_57_CT2]
          Length = 290

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 14/148 (9%)

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           L       + I++++ EL+  YE  K +           ++  ++K A +    L  G+K
Sbjct: 116 LLVEKAAIQDIKVTDKELKESYENYKPEI------KARHILLEDEKTAKDIKNRLNDGEK 169

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA+E  K          LG F    +      ++ ++L +   F+  I    GY I 
Sbjct: 170 FEDLAKEFSKDPGSAEDGGDLGWFGSGKMV-PEFEEAAYAL-EVNKFSDPIKTQNGYHII 227

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITK 379
            V+  K     SF+ ++K++  Q++++K
Sbjct: 228 QVTEKKEKE--SFEYMRKELEYQLKVSK 253


>gi|291296508|ref|YP_003507906.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber
           DSM 1279]
 gi|290471467|gb|ADD28886.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber
           DSM 1279]
          Length = 305

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 88/241 (36%), Gaps = 28/241 (11%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
             G+  S   L   K+ + E  + +  ++  +   A    S   +     + K ++ + E
Sbjct: 52  QNGLSYSEEALAALKKRFLELVARERAII-LKAEAAGFAASKDDVQAAVAEVKADFDSEE 110

Query: 229 ----------------YKRISYILFD----VHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
                           Y  + Y        +    K+++ S   L+  Y  +K ++  P+
Sbjct: 111 AFTQALKEAGIPSLEVYHTLVYEALTYNAYLEHLLKQLKTSEPALRLLYLVSKSQFALPK 170

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVS 324
                 ++    +EA +    L KG+KF  LA    ++ G       LG   +       
Sbjct: 171 RYCSAHILVDTAQEAYQVIARLGKGEKFADLARALSKDPGSKEEGGDLGCEPRGTFV-AP 229

Query: 325 LADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              ++ +L + G+ +   +   FGY I  +  ++ +    F+EV+ ++   +R +     
Sbjct: 230 FELALVAL-QPGESSKVPVKTEFGYHIILLKRVEAAGFQGFEEVRAELDQTIRNSAVYRL 288

Query: 384 V 384
           +
Sbjct: 289 L 289


>gi|218885391|ref|YP_002434712.1| SurA domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756345|gb|ACL07244.1| SurA domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 320

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 112/358 (31%), Gaps = 83/358 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +     V  + + F         EL  +        + E  R V L  ++LD+L+S   +
Sbjct: 36  NKIAAVVNGEMITFFDVQAQATPELMRLGLDRNNPAHQEAVRKVHL--QVLDSLISDILM 93

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +Q  E   +    G V  E+ +      + ++ S   F  +L ++G++     D   K +
Sbjct: 94  NQEAERWKITVQDGEVENELRKF----VQRSQLSQQEFERQLTQQGLSMDVMRDRVRKGI 149

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  ++ +                                  +      +   + ++++ 
Sbjct: 150 LRHRLLTLM---------------------------------IARKIVITQEDVKKYYDA 176

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +K  +      R+  +                                        +F  
Sbjct: 177 HKSQFVTDRTVRLGLV----------------------------------------IFAP 196

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKG 336
              A+     ++ G+  F QLA  +    +  S G     K      +  +++  L K G
Sbjct: 197 TANAEALADKVRTGQTTFEQLAASESIGPNPGSGGDIGTLKWTDLAPAWKEALDGL-KAG 255

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           + +PVI       +  +  +    + + +E   +I N +R  K  E+  E  K+L + 
Sbjct: 256 ETSPVILVEGRKAMLKLVAVTTGRSQTVEEATPEIENILREPKLQERFTEYTKQLHDK 313


>gi|260912199|ref|ZP_05918751.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633633|gb|EEX51771.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 713

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 84/676 (12%), Positives = 181/676 (26%), Gaps = 129/676 (19%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGF-VVNSERARSVGLDKKILDNLVSGATL 99
             V  V  +K+    F     +    I  + G   +N E+     +   + +  V    +
Sbjct: 43  QQVGEVYGEKISVQEFQKMVDEYAEAIKMQQGQDNLNDEQLNQ--VKDMVWNTYVQNKLV 100

Query: 100 DQFIEDIGLEADHGRVWG--------EIARSPLFHGKDNKFSHDVFVSRL----AREGIN 147
           ++  +++GL      +           + ++P  + +  +F        L     ++  N
Sbjct: 101 EKEAKELGLTVTDQEMQNILSQGTNPMLMQTPFVNQQTGRFDASSLKKFLAEYKNQQTAN 160

Query: 148 EK---EYI----------DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR---------- 184
            +   +Y                 L       +    +  + +    A +          
Sbjct: 161 PQMAQQYESIYKYWTFIEKQLRTQLLAQKYQSLLAHCLLSNPVEAKMAFKEENEESQIQL 220

Query: 185 --------------------------------FYFENRSVDYIVLNNRHVPAIADPSNAV 212
                                            Y E R + Y+ +      A        
Sbjct: 221 AAFPYSSIEDSKVQVSESDLKAKYEELKPRFKQYVETRDIKYVDIQVDASTADKAALRKQ 280

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN------------ 260
              + ++  +     +  R S  L          E    ++ A  +              
Sbjct: 281 FADYTKELAEAADPADVVRKSTSLVSYLGLPVGKEAYPGDIAARLDSMGVGSVYGPVENT 340

Query: 261 ----------KEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQG 304
                       K   P+     Q+           K AD  + +L  G  F  LA++ G
Sbjct: 341 QDNTLNLIKLVAKVQLPDSVEYRQIQVGGVTPEAAHKTADSIYNALNNGADFEALAKKYG 400

Query: 305 KS--LSDISLGSFSKEYIPDVSLADSIFSLAKKG--DFTPVIHGSFGYVIAHVSNIKPSF 360
           ++   + ++   +      D    D I SL   G  D   +     G +I  V N K   
Sbjct: 401 QTGEKTWMTTRQYQMAPSMDKDTKDYINSLNTMGVNDIKNITLAQ-GNIILQVLNRKAMV 459

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           T     V   +   +  +K  E  +  Y +   F++   + + + +        +     
Sbjct: 460 TKYQAAV---VKRNVEFSK--ETYRTAYNKFSSFVSANPTAESVVKNAAKSGYRVQEAKD 514

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
                    +A I    + L  +F  ++           +   + V +    P   R L 
Sbjct: 515 V--TTAQHNLAGIRSTREALKWLFDANEGDVSPLYECGDNNHLLLVVLDRINPIGYRSLN 572

Query: 481 --EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
             +V   VK +    K       KA Q++ +    G       +  G  +   NQ+    
Sbjct: 573 DPQVKEMVKAEVIRDK-------KAEQILAKL--NGVTSIAAAQAKGGVVTPVNQVTFAS 623

Query: 539 ----NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
                            V +         P++      +F+VT   + P     +E +  
Sbjct: 624 PVFLTATGASEPALSGAVAATAKGAFDKTPVKGNAGVYMFQVTGRTMRPVKYNAKETELR 683

Query: 591 ISYLTQMMNKDLLDSV 606
           +         + ++ +
Sbjct: 684 LRQRAMQYAGNFMNQL 699


>gi|189462485|ref|ZP_03011270.1| hypothetical protein BACCOP_03174 [Bacteroides coprocola DSM 17136]
 gi|189430646|gb|EDU99630.1| hypothetical protein BACCOP_03174 [Bacteroides coprocola DSM 17136]
          Length = 711

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 96/727 (13%), Positives = 208/727 (28%), Gaps = 139/727 (19%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F+       L    G      V    +    +     
Sbjct: 4   LQTIR--SKGPLLVIVIGLALFAFIAGDAWKILQPHQGKQDAGEVNGNTLSAQDYQKMVD 61

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   +I    G    SE  +   +  ++ +  V+   +    + +GL+     +   I  
Sbjct: 62  EFSEVIKLTNGLNSLSED-QLTNIKDQVWNTYVTNELIAAEAKKLGLKVTDKELQAIIDE 120

Query: 120 ------ARSPLFHGK-DNKFSHDVFVSRL---AREGIN--EKEYIDHY------------ 155
                  ++P F       F  D+    L   A    +    +Y+++Y            
Sbjct: 121 GTNPLLMQTP-FRNPQTGAFDKDMLKKFLVDYANLDASKMPAQYVEYYQTMGNFWKFVER 179

Query: 156 --TKMLSRTDVVGMFVGGMRPSNLLL--------------------------------DQ 181
              + +       +    +  + +                                  D 
Sbjct: 180 TLKQSVLAEKYQNLIAKSLISNPVAAEDVFNGHTAQSDLLLAGIPYSSISDSTITVSNDD 239

Query: 182 AKRFYFE----------NRSVDYIVLNNRHVPAIADPSNAVLTQWFEK---YKDNYRAPE 228
            K+ Y E           R + +I +      A        +T++  +     ++Y A  
Sbjct: 240 IKKLYEEKKESFKQPVETRDIKFIDVRVVPSEADRQEVQKEVTEYSSQLITTTNDYTAFI 299

Query: 229 YKRISYILFDVHEKEKKIEISNDELQ-----------AEYEKNKEKY---------FSPE 268
               S I F      K +  S+   +             Y +  + Y          +P+
Sbjct: 300 RSTGSVIPFADVPVNKTVLPSDVASRLDSTSVNEVYGPYYNQADDSYNAFKIIAKTTAPD 359

Query: 269 IRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYI 320
                Q+      EA      D  + +LK+G  F +LA++ G++   + ++  S+    +
Sbjct: 360 SIQFRQIQVYADTEAKTASLADSIYNALKEGADFAELAKKYGQTGEANWVNAQSWEGAAL 419

Query: 321 --PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI- 377
              + +  + + S     +   V  G    +I  V N K         +K      +   
Sbjct: 420 DAENATFINKLIS-QPVNELANVKVGQAN-LILQVMNKKA--------MKDKYKVAVIKC 469

Query: 378 --TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
               + E     Y +  +F+A  T+++ + +  +     L        D     V  +  
Sbjct: 470 PVEFSKETYNNAYNKFSQFVAQNTTIENLEKNAEEAGYSLTPRSNFRSDEHY--VGGVKS 527

Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
             + L  VF               +   + V ++   PA    + +V   ++ +    K 
Sbjct: 528 TREALKWVFDAKPGEVSPLYECGENDHLLVVALEAINPAGYVNINKVSDMLRSEVLRNKK 587

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF------GYDGI 549
           AE++  +            K F  + +  G     ++ +  +      F          I
Sbjct: 588 AEQIMGQM-----------KGFNSLAQVKGMKDAISDTVKHVTFNAPAFISVTRASEPAI 636

Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
           S   S         PI+      + +V N +    +   K        M        I  
Sbjct: 637 SAYASKTELNKVSAPIKGNAGVYMIQVYNQEKSTEKFDAKKEETALSNMAARYAGQCIYE 696

Query: 610 LKSQYSV 616
           L+ +  +
Sbjct: 697 LRDKAEI 703


>gi|226940617|ref|YP_002795691.1| signal peptide protein [Laribacter hongkongensis HLHK9]
 gi|226715544|gb|ACO74682.1| Probable signal peptide protein [Laribacter hongkongensis HLHK9]
          Length = 257

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 6/143 (4%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +  K   +S  +++AEY++ K +    E R    ++ P+Q+EA +  + LKKG +F  LA
Sbjct: 102 DFMKSHPVSEADVRAEYDRMKVQMARKEYR-ARHILVPSQEEAAKVLEQLKKGARFEDLA 160

Query: 301 EEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +     G   +   LG      +     + ++  LAK       +   FG+ I  +++ 
Sbjct: 161 RQYSIDTGSKANGGDLGFVDPAQLV-PEFSGAMTKLAKGQITQTPVKSQFGWHIIQLTDT 219

Query: 357 KPSFTVSFQEVKKDIANQMRITK 379
           K +   +   V+  +  Q++  +
Sbjct: 220 KEADFPALDAVRAQLEQQIQGQR 242



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 18/163 (11%)

Query: 468 IKESIPARDRKLEEVLTD--------VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
           +++ + +      +V  +         +K+++          +A + VLE  K+G  F D
Sbjct: 100 VRDFMKSHPVSEADVRAEYDRMKVQMARKEYRARHILVPSQEEAAK-VLEQLKKGARFED 158

Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP-----VEMVKCFPIENGLSYVVF 574
           + +       +         +  F     +   FSG         +   P+++   + + 
Sbjct: 159 LARQYSIDTGSKA----NGGDLGFVDPAQLVPEFSGAMTKLAKGQITQTPVKSQFGWHII 214

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
           ++T++K       D   + L Q +     D+ IA LK+Q  V 
Sbjct: 215 QLTDTKEADFPALDAVRAQLEQQIQGQRFDAYIARLKAQAKVQ 257


>gi|254252165|ref|ZP_04945483.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
 gi|124894774|gb|EAY68654.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
          Length = 260

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               KK + ++ E++A Y++  +         +  ++  ++++A E    +K G KF  L
Sbjct: 103 ENFLKKNQPTDAEVKARYDELVKGAGGNREYHLHHILVDSEQQAKELIAKIKAGAKFEDL 162

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    +S         A +   L K       +   FG+ I  V +I
Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDQPVKTQFGWHIIRVDDI 222

Query: 357 KPSFTVSFQEVK 368
           +      F +VK
Sbjct: 223 RDIAPPPFDQVK 234


>gi|296450315|ref|ZP_06892075.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
 gi|296878727|ref|ZP_06902731.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
 gi|296260876|gb|EFH07711.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
 gi|296430301|gb|EFH16144.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
          Length = 380

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 87/235 (37%), Gaps = 46/235 (19%)

Query: 196 VLNNRHVPAIADPSNAVLTQWF---------------EKYKDNYRAPEYK---RISYILF 237
           +L++         +N  L   +               E++   +   E      +   L 
Sbjct: 141 ILSSEAAKEKISITNDQLDAQYNNLMSSIESAMGMTKEEFLKQFDLTEKYIKDDMKKELV 200

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------------QK 281
                 +K ++++ E +  Y KNK  Y          ++                   +K
Sbjct: 201 ASKYLNEKSKVTDKEAENYYNKNKNNYL---QVRASHILIKTVDDKGKQVSNSKKAELKK 257

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           EA+E  +  + G+ F  LA++  +  S      LG F K  + + S   + F+L KKG+ 
Sbjct: 258 EAEEILKKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVE-SFEKAAFAL-KKGEV 315

Query: 339 T-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +  ++   +GY I   ++ K      F+E+K D+ + +   K S  ++   ++  
Sbjct: 316 SNKLVESDYGYHIIKKTDEK---YQPFEEIKSDLVSSLTSEKQSLLIQNLKEKYN 367


>gi|293603952|ref|ZP_06686366.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
 gi|292817645|gb|EFF76712.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
          Length = 258

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 4/158 (2%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FI 297
           + +   K  +S+ ++ AEYEK K++        V  ++  ++K A++    +K  K  F 
Sbjct: 99  MADYLAKNPVSDAKVTAEYEKIKKEQAGKMEYKVRHILVEDEKTANDLLAQIKSNKSKFD 158

Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            LA++  K       G    ++         A ++  L K       +   FG+ I  V 
Sbjct: 159 DLAKKNSKDPGSAEKGGDLGWAPPTNYVQPFAQAVTQLKKGQLVDKPVQTQFGWHIIMVD 218

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + +P       +V+  +   +R    ++  K+   + +
Sbjct: 219 DTRPVEFPPLDQVRPQLEEMLRQQTLADYQKQLRDKAK 256


>gi|119474853|ref|ZP_01615206.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma
           proteobacterium HTCC2143]
 gi|119451056|gb|EAW32289.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma
           proteobacterium HTCC2143]
          Length = 440

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/403 (14%), Positives = 122/403 (30%), Gaps = 60/403 (14%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  V    V  S       Q +  I Q+ G  V         + + ++D L+     
Sbjct: 48  DQVIAIVDDDVVLASELQERVAQVVANIQQQ-GKEVPPL----PEIRQSLMDQLILENIQ 102

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q     G+     ++   + R      + N+ + D F   L  +G++     +   K +
Sbjct: 103 MQLAVRAGVRISDAQLNDSMLRI----AQQNQLTLDQFRQALDADGLSYAGTREQIRKEM 158

Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
               V                 + L  D+       +  + + ++      + AD + A 
Sbjct: 159 MLQRVQQGNVNQRVQITDQEITNFLDSDEGAALTAPDYRMLHTLIPLPSSASSADITAAK 218

Query: 213 LTQ--WF------EKYKDNYRAPEYKRISYILFDVHEKEKKI-----EISNDE------- 252
           +     +      E Y++      ++          +    I      ++ DE       
Sbjct: 219 VRAEKLYLRVQEGESYEEVLATTPFETTDLGWRKAADLPSLIADLTTTMAKDETAEPVQS 278

Query: 253 -----LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF---------QSLKKGKKFIQ 298
                L    +   E    P    V  ++  +    DEA          Q +  G  F +
Sbjct: 279 PSGFHLVKLADSRGEGELIP-QAKVRHILLKSSAIRDEAATEALAISLRQQIIDGADFGE 337

Query: 299 LAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA E     G +L    LG  S   +        +   A+  D +      FG+ I  V 
Sbjct: 338 LAREYSEDIGSALEGGDLGWSSPGQLVGE--FQKVMDQAEINDISAPFTSQFGWHILQVL 395

Query: 355 NIKPSFTVSFQEVKKDI-ANQMRITKASEKVKEDYKRLEEFLA 396
             +        +++++I  N +   K  ++++   +++ +   
Sbjct: 396 ERRDKDVT--DDIRRNITRNYLHKRKFGDELETWLQKIRDEAY 436


>gi|94499974|ref|ZP_01306509.1| Parvulin-like peptidyl-prolyl isomerase [Oceanobacter sp. RED65]
 gi|94427832|gb|EAT12807.1| Parvulin-like peptidyl-prolyl isomerase [Oceanobacter sp. RED65]
          Length = 436

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/403 (13%), Positives = 126/403 (31%), Gaps = 73/403 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S    V    +  S              Q  G  +  +      L  ++L+ L+     
Sbjct: 40  DSIAAVVDDGIIMESELEQRIDTIK---RQSQGMRLPPDDI----LQDQVLERLIIENLQ 92

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+     ++   I        K N  +   F   L ++G++  +  +   +  
Sbjct: 93  LQMAERSGMRISDEQLNQTIINI----AKQNGLTLREFKKALEKDGVSYAQAREQIRRER 148

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
             ++V    VG  +  S   +D        ++ + +   L +  +   +  S A L +  
Sbjct: 149 IISEVQRYRVGSKINISEQDVDNFLNSVRGKSATAEEYRLGHILIQVPSQASRAQLKRAQ 208

Query: 218 EK---------YKDNYRA-------------------PEYKRISYILFDVHEKEKKIEIS 249
            K            +++                     +   +  +  D+    KK ++S
Sbjct: 209 NKAEDIVKKLRNGADFQQMAISQSEGRNALKGGDLGWRKEAELPTLFADIVPDLKKGQVS 268

Query: 250 NDE-------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
           N         +    +K               ++            +K  ++ ++ LK G
Sbjct: 269 NPIRSASGYHIIKISDKRGGDTQMVRQTKARHILIQENEIRNSQQAKKLINDLYKKLKNG 328

Query: 294 KKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
             F +LA+E        LS   LG  ++  +   +   ++ +  KKG  +      FG+ 
Sbjct: 329 ADFDELAKEYSDDPGSKLSGGDLGWVNQGDMV-PAFEQTMNA-TKKGQISEPFKSRFGWH 386

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +  V++ +          +KD+  +++  +A + +       E
Sbjct: 387 VLQVTDYR----------QKDVGEEIQRNQARQLLYSRRFEEE 419



 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 18/204 (8%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQSLKK 292
           KI IS  ++       + K  + E   +  ++               Q +A++  + L+ 
Sbjct: 161 KINISEQDVDNFLNSVRGKSATAEEYRLGHILIQVPSQASRAQLKRAQNKAEDIVKKLRN 220

Query: 293 GKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           G  F Q+A  Q +   +L    LG   +  +P    AD +  L KKG  +  I  + GY 
Sbjct: 221 GADFQQMAISQSEGRNALKGGDLGWRKEAELP-TLFADIVPDL-KKGQVSNPIRSASGYH 278

Query: 350 IAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
           I  +S+ +   T   ++ K   I  Q    + S++ K+    L + L  G   DE+++  
Sbjct: 279 IIKISDKRGGDTQMVRQTKARHILIQENEIRNSQQAKKLINDLYKKLKNGADFDELAKEY 338

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAA 432
                        G   +G  V A
Sbjct: 339 SDDPGSKLSGGDLGWVNQGDMVPA 362


>gi|239906716|ref|YP_002953457.1| putative peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           magneticus RS-1]
 gi|239796582|dbj|BAH75571.1| putative peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           magneticus RS-1]
          Length = 371

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/368 (12%), Positives = 105/368 (28%), Gaps = 91/368 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +              M+ Q  G  +  +  R   L +++L+++++   +
Sbjct: 69  DRVVAVVNGKLITLFDVNTRV---ADMVKQTQGVALKPDDPRLDDLRRQVLESMITDMLI 125

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +     + +      +  +I        K N  S   FV+ LA+EG+  K++ D      
Sbjct: 126 ESEANKLKVTVSDTEIDSQIEEI----KKKNNLSQQQFVTELAKEGLTLKQFRDKMRLDS 181

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            +  ++G                                   V      ++  +  ++EK
Sbjct: 182 IKKRLLGFM---------------------------------VHRKVLVTDDEIRDYYEK 208

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            K +                 +     ++S                      +  ++ PN
Sbjct: 209 NKGS-------------LSAAKSVLGPKVSG--------------------GLGFIMVPN 235

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
           +K+A+E    +  G   F   A++            LG    + +    L  ++ ++   
Sbjct: 236 KKQAEELRDRINSGSMSFADAAKKFSIGPGRDQGGDLGDVQIKDLA-PPLRSALTAVP-P 293

Query: 336 GDFTPVIHGSFGYVIA------------HVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           G  +  +      V+                        S++  K+ I   +   K  + 
Sbjct: 294 GQVSEPVLLDGKAVLLVQRTASAPAEKPAAPAAAAGSNPSYEAAKEQIQELLYKQKFDKL 353

Query: 384 VKEDYKRL 391
            +E    L
Sbjct: 354 FQEYIDNL 361



 Score = 38.4 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 15/134 (11%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
             +A +L    +    +F D  K            +  D + K       S + + P   
Sbjct: 236 KKQAEELRDRINSGSMSFADAAKKFSIGPGRDQGGDLGDVQIKDLAPPLRSALTAVPPGQ 295

Query: 560 VKCFPIENGLSYVVFKVTN---------------SKVGPVQEKDKFISYLTQMMNKDLLD 604
           V    + +G + ++ + T                S       K++    L +     L  
Sbjct: 296 VSEPVLLDGKAVLLVQRTASAPAEKPAAPAAAAGSNPSYEAAKEQIQELLYKQKFDKLFQ 355

Query: 605 SVIAYLKSQYSVTV 618
             I  L+S+  V V
Sbjct: 356 EYIDNLRSKAVVEV 369


>gi|325276043|ref|ZP_08141858.1| SurA domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324098828|gb|EGB96859.1| SurA domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 428

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/409 (13%), Positives = 135/409 (33%), Gaps = 65/409 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S       +    I+++ G V  +       L++++L+ L+     
Sbjct: 20  DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGSVPPA-----GALEQQVLERLIVENLQ 74

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S D F + LA +G++  +  D   + +
Sbjct: 75  LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALAHDGLSFDDARDQVKREM 130

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAK-------RFYFENRSVDYIVLNNRHV-PAIADPSN 210
             + V        ++ S   +           +   E R  + ++        A    + 
Sbjct: 131 IISRVRQRRVAERIQVSEQEVKNFLNSDMGKMQMSEEYRLANILIPTPEAANSADIQKAA 190

Query: 211 AVLTQWFEKYKD--NY-------------------------RAPEYKRISYILFDVHEKE 243
             + + +++ K   ++                         + P           V E  
Sbjct: 191 RQVGEVYQQLKQGADFGQLAIARSASENALEGGEMGWRKAAQLPPDFAKMLSSMPVGEIT 250

Query: 244 KKIEISNDELQAEYEKNK--EKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKK 292
           + I I N  +  + E+ +   +    +   V  ++            ++ A+  ++ +K 
Sbjct: 251 QPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSDAATEQLAERLYERIKN 310

Query: 293 GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G+ F +LA+    + G +L+   L       +          +  ++G  T      +G+
Sbjct: 311 GEDFAELAKSYSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGVVTKPFKTQYGW 368

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396
            +  V   + + +   ++ ++  A N +R  K  E+++   +++ +   
Sbjct: 369 HVLEVLGRRATDST--EQAREQQALNVLRNRKYDEELQTWLRQIRDEAY 415



 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/262 (11%), Positives = 90/262 (34%), Gaps = 17/262 (6%)

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
            + AN   I KA+ +V E Y++L++    G    +++         L   +   +     
Sbjct: 178 PEAANSADIQKAARQVGEVYQQLKQ----GADFGQLAIARSASENALEGGEMGWRK---- 229

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVK 487
                        ++            + +P+G ++ ++++E     +  L +EV     
Sbjct: 230 ----AAQLPPDFAKMLSSMPVGEITQPIRIPNG-FIILKLEEKRGGSENVLRDEVHVRHI 284

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
               +   ++  + +  + + E  K G++F ++ K+      +      ++  +      
Sbjct: 285 LIKPSEIRSDAATEQLAERLYERIKNGEDFAELAKSYSEDPGSALNGGDLNWVDPNSLVP 344

Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLD 604
              +  +   + V   P +    + V +V   +     E+    + ++ L      + L 
Sbjct: 345 EFREQMANAQQGVVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQALNVLRNRKYDEELQ 404

Query: 605 SVIAYLKSQYSVTVHDNLIQRY 626
           + +  ++ +  V +      + 
Sbjct: 405 TWLRQIRDEAYVEIKLPGADQA 426


>gi|34498387|ref|NP_902602.1| signal peptide protein [Chromobacterium violaceum ATCC 12472]
 gi|34104241|gb|AAQ60600.1| probable signal peptide protein [Chromobacterium violaceum ATCC
           12472]
          Length = 262

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 66/154 (42%), Gaps = 3/154 (1%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  +K  + + +++A Y++   +    +     Q+   ++ +A +    LKKG KF +L
Sbjct: 105 ADIAEKANVGDAQIKARYDEMAAQVAGSKEVHAYQITLGSEADAQKVIAQLKKGAKFDEL 164

Query: 300 AEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            + +    +    G    +      +  LA+++ ++ K    +       G+ +  V++I
Sbjct: 165 VKTRSIDPNAKQSGGDMNWGNLSRMEPKLAEALKAIPKGQVSSAPYQSQLGWHVFKVADI 224

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           + +       VK  IA Q++    ++ V++   +
Sbjct: 225 RNAQVPPLDAVKPQIARQLQEEAIAKAVEDLRAK 258



 Score = 38.0 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 4/141 (2%)

Query: 480 EEVLTDVK--KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
           +E+   V   K+    +      + A +++ +  K+G  F ++ K              M
Sbjct: 123 DEMAAQVAGSKEVHAYQITLGSEADAQKVIAQL-KKGAKFDELVKTRSIDPNAKQSGGDM 181

Query: 538 DNENKFFGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596
           +  N       +++     P   V   P ++ L + VFKV + +   V   D     + +
Sbjct: 182 NWGNLSRMEPKLAEALKAIPKGQVSSAPYQSQLGWHVFKVADIRNAQVPPLDAVKPQIAR 241

Query: 597 MMNKDLLDSVIAYLKSQYSVT 617
            + ++ +   +  L+++  + 
Sbjct: 242 QLQEEAIAKAVEDLRAKSKIQ 262


>gi|260219454|emb|CBA26299.1| Probable parvulin-type peptidyl-prolyl cis-trans isomerase
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 239

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 6/157 (3%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           ++YK+     +   +   LF   + +KK  ++++E +AEY+K        E R    ++ 
Sbjct: 63  DEYKNQLELTKQSILIRELFG--DFQKKNPVTDEETKAEYDKFASANAGKEYR-ARHILV 119

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAK 334
             + +A      LKKG KF  LA++  K     + G    ++         +D++  L+K
Sbjct: 120 EKEDQAKALIAQLKKGAKFEDLAKKNSKDPGSGANGGDLDWANASSYVKEFSDALTGLSK 179

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
                  +   FG+ I  + +++ +    +++VK  I
Sbjct: 180 GKMTDAPVKTQFGFHIIRLEDVREAQLPKYEDVKPQI 216


>gi|325526673|gb|EGD04205.1| SurA domain-containing protein [Burkholderia sp. TJI49]
          Length = 452

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/410 (11%), Positives = 119/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 40  DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPTDQ-----LRAQVLNQMVLERIQ 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D   V   + R      + N  + D + +RL  +G+    +       L
Sbjct: 95  VQKAKDDGIRIDDATVQATLQRL----AQANGMTLDQYRARLESQGVPWSIFTADARTEL 150

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDYIVL---------------- 197
             + +    V G +  S+  +             + + + +  +                
Sbjct: 151 MLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTEIEAA 210

Query: 198 -NNRHVPAIADPSNAVLTQWFEKYKDN----------YRAP-----EYKRISYILFDVHE 241
                       S A   +  +   +           +++P     E    +  L     
Sbjct: 211 QKKAEALLQQATSGADFEKLAKNNSEASDAKKGGDLGFKSPSALPAEVVDAASKLRPGQV 270

Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286
               I + +  E+    ++ + +  +          V  ++            +++  + 
Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLLDI 330

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
              ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 331 RNQIEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPVR 388

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 389 TEYGYHLIQVIGRRDAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437


>gi|163733010|ref|ZP_02140454.1| PPIC-type PPIASE domain protein [Roseobacter litoralis Och 149]
 gi|161393545|gb|EDQ17870.1| PPIC-type PPIASE domain protein [Roseobacter litoralis Och 149]
          Length = 285

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 57/138 (41%), Gaps = 5/138 (3%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           E   +  I+ +++QA Y+         E      ++   ++EA    +++  G  F   A
Sbjct: 110 EIALEQAITEEDIQAAYDAEFGNIDPEEEFNASHILLETEEEAIAVKEAIDAGANFAATA 169

Query: 301 EEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            E+    S      LG F    +   S   +  +L + G+ +  +   FG+ +  +++ +
Sbjct: 170 REKSTGPSGPNGGELGWFGTGMMV-PSFEAATIAL-EVGEVSDPVETQFGWHVIVLNDTR 227

Query: 358 PSFTVSFQEVKKDIANQM 375
                + ++ ++ I +++
Sbjct: 228 KKEIPTLEQAREGIQSRL 245


>gi|319941473|ref|ZP_08015801.1| hypothetical protein HMPREF9464_01020 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805093|gb|EFW01923.1| hypothetical protein HMPREF9464_01020 [Sutterella wadsworthensis
           3_1_45B]
          Length = 261

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 7/163 (4%)

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           +   V +  KK  +S+ E++A Y+  K+ Y   E   V  ++   ++EA    Q L KG+
Sbjct: 99  VELLVADYAKKNPVSDKEVRAAYDNAKKVYGDTEY-QVRHILVKTEQEAKNIIQRLNKGE 157

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTP-VIHGSFGYVI 350
           KF  LA+ +         G       P   + +  ++ F +   GD     I   FG+ +
Sbjct: 158 KFDALAKSESLDPKSGPAGGLIGWLSPSNVEPNFGNA-FKILSAGDVAQAPIQNQFGWHV 216

Query: 351 AHVSNIKPSFT-VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             +   +      +++  K  +  Q+    A     E  ++ +
Sbjct: 217 IKLDAKRSQKNFPTYESQKDSLRAQLSQLNAKRHFAELVQKAK 259


>gi|70732935|ref|YP_262706.1| survival protein SurA [Pseudomonas fluorescens Pf-5]
 gi|68347234|gb|AAY94840.1| survival protein SurA [Pseudomonas fluorescens Pf-5]
          Length = 440

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/408 (11%), Positives = 132/408 (32%), Gaps = 64/408 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S       +    I+++ G V  +       L++++L+ L+     
Sbjct: 33  DKVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPTSV-----LEQQVLERLIVENLQ 87

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++ ++  D   + +
Sbjct: 88  LQIGERSGIRITDEELNQAIGTI----AQRNSMSIEQFRAALAHDGLSYEDARDQVRREM 143

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAK-------RFYFENRSVDYIVLNNRHVPAIADPSNA 211
             + V        ++ S   +           +   E    + ++       + A  S A
Sbjct: 144 IISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPESANSEAIQSAA 203

Query: 212 -VLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252
               + +++ K   ++                     ++ + +      +   + + +  
Sbjct: 204 RQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMGWRKAAQLPPPFDRELSAMAVGDIT 263

Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
                     +    +K        +   V  ++            ++ A + +  ++ G
Sbjct: 264 QPARTPGGFIILKLLDKRGGGNQVRDEVHVRHILIKPSEIRSEEETKRLAQKLYDRIEAG 323

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F +LA+    + G +L+   L       +      + + +   +G  +      +G+ 
Sbjct: 324 EDFAELAKSYSEDPGSALNGGDLNWIDPNALV-PEFRE-VMAKTPQGQLSKPFKSPYGWH 381

Query: 350 IAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396
           +  V   + + + S  + ++  A   +R  K  E+++   +++ +   
Sbjct: 382 VLEVLGRRATDSTS--QAREQQAMTVLRNRKYDEELQTWLRQIRDEAY 427



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 91/278 (32%), Gaps = 40/278 (14%)

Query: 151 YIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
                 + L   ++        G+R ++  L+QA     +  S+                
Sbjct: 73  LEQQVLERLIVENLQLQIGERSGIRITDEELNQAIGTIAQRNSMSIEQFRAALAHDGLSY 132

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            +A             R    + +           ++I++S  E++     +  K    E
Sbjct: 133 EDA-------------RDQVRREMIISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSE 179

Query: 269 IRTVEQLVFPNQKEAD------------EAFQSLKKGKKFIQLAEEQGK---SLSDISLG 313
              +  ++ P  + A+            E +Q LK+G  F QLA  +     +L    +G
Sbjct: 180 ELHLANILIPTPESANSEAIQSAARQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMG 239

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK----- 368
                 +P       + ++A  GD T       G++I  + + +        EV      
Sbjct: 240 WRKAAQLP-PPFDRELSAMA-VGDITQPARTPGGFIILKLLDKRGGGNQVRDEVHVRHIL 297

Query: 369 ---KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
               +I ++    + ++K+ +  +  E+F  L  S  E
Sbjct: 298 IKPSEIRSEEETKRLAQKLYDRIEAGEDFAELAKSYSE 335



 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/312 (10%), Positives = 102/312 (32%), Gaps = 52/312 (16%)

Query: 363 SFQEVKKDIANQ-----MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           S+++ +  +  +     +R  + +E+++   + ++ FLA      ++S    + +I +P 
Sbjct: 131 SYEDARDQVRREMIISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPT 190

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
            + A  +             Q L     F +          AL  G   W +  +  P  
Sbjct: 191 PESANSEAIQSAARQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMGWRKAAQLPPPF 250

Query: 476 DRKLE------------------------------EVLTDVK--------KDWKTVKTAE 497
           DR+L                               +V  +V          + ++ +  +
Sbjct: 251 DRELSAMAVGDITQPARTPGGFIILKLLDKRGGGNQVRDEVHVRHILIKPSEIRSEEETK 310

Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
            ++ K    + +  + G++F ++ K+      +      ++  +         +V +   
Sbjct: 311 RLAQK----LYDRIEAGEDFAELAKSYSEDPGSALNGGDLNWIDPNALVPEFREVMAKTP 366

Query: 558 EMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
           +     P ++   + V +V     +       + + ++ L      + L + +  ++ + 
Sbjct: 367 QGQLSKPFKSPYGWHVLEVLGRRATDSTSQAREQQAMTVLRNRKYDEELQTWLRQIRDEA 426

Query: 615 SVTVHDNLIQRY 626
            V +     ++ 
Sbjct: 427 YVEIKLPGAEQA 438


>gi|187477572|ref|YP_785596.1| protein foldase [Bordetella avium 197N]
 gi|115422158|emb|CAJ48682.1| putative protein foldase [Bordetella avium 197N]
          Length = 258

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 4/158 (2%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFI 297
           + +  KK  +++ E++AEYEK K++    +   V  ++  ++K A++    +K GK KF 
Sbjct: 99  MADYLKKHPVTDAEVKAEYEKIKKEQAGKQEYDVRHILVEDEKTANDLLAQIKSGKLKFE 158

Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
             A++  K       G    ++         AD+I  L K       +   FG+ I    
Sbjct: 159 DAAKKYSKDPGSAERGGDLGWAPASNYVPPFADAITKLKKGEIADKPVQTQFGWHIIQEK 218

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + +        +V+  +   MR  K +   KE  ++ +
Sbjct: 219 DARAVEFPPLDQVRSQLEEMMRQQKLNAFQKELREKAK 256


>gi|296445269|ref|ZP_06887228.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
 gi|296257224|gb|EFH04292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
          Length = 335

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 77/247 (31%), Gaps = 33/247 (13%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I   +   +   + +R           +   LL    +    E   +   +         
Sbjct: 77  ITTSQLRAYVEALGAREQ-----AAIAKEPGLLSQAVRAMLNERVVLQEALAKKWDQQPK 131

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
                  L +              + +                S +ELQ  Y+ N+  + 
Sbjct: 132 VAAQLEQLRE--------------RALVESYLQSVSVPPADYPSEEELQKAYDANRSSFV 177

Query: 266 SPEIRTVEQLVFPNQKEADEA------------FQSLKKGKKFIQLAEEQGKSLSDISLG 313
            P    +  +   + K+AD A             + LK G  F  +A+ Q ++     LG
Sbjct: 178 VPRQFQLGHIFVQSPKDADRATEDKAKKTLEDIQRKLKSGADFAAVAKAQSEAKDGGELG 237

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
             ++  I    +   +  L K G  +  I    G+    + + K S T    E ++ +A 
Sbjct: 238 WLAEGQI-RPEIRTRVMGLVK-GAVSEPIQLDDGWHFVKLIDTKASTTRPLAEAREQLAQ 295

Query: 374 QMRITKA 380
           QMR+ +A
Sbjct: 296 QMRVERA 302


>gi|253689994|ref|YP_003019184.1| Peptidylprolyl isomerase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756572|gb|ACT14648.1| Peptidylprolyl isomerase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 431

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/394 (14%), Positives = 125/394 (31%), Gaps = 68/394 (17%)

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           NS  Q + + +Q+ G  +         L  +I D L+    + Q  + +G++    ++  
Sbjct: 43  NSLLQSVKLNAQQAGQQLP----DDATLRHQITDRLIMDNIILQMAQKMGIQVTDEQLEQ 98

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSN 176
            I          N+ S D   S+LA EG+N   Y     K +  ++V        +    
Sbjct: 99  AITNIAA----QNRMSLDQLKSQLAYEGLNYNTYRSQIRKEMLISEVRNNEVRRRVTVLP 154

Query: 177 LLLDQAKR-FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
             +D   +    +    D + L++  +P   +P+   + +  E    +      +   + 
Sbjct: 155 QEVDTLAKQIANQTGENDELNLSHILIPLPENPTQQQVDE-AENLATSLVKQISEGADFG 213

Query: 236 LFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPEIR----------------- 270
              +        +           E+   + +   +    ++                  
Sbjct: 214 KLAITYSADSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDI 273

Query: 271 ------------TVEQLVFP---------NQKEADEAFQSLKKG-KKFIQ----LAEEQG 304
                           ++            Q +  +  Q +K G   F      L+++ G
Sbjct: 274 RGGNKSVSVTETHARHILIKPSVVMTDSQAQAKLADVAQQIKNGSTDFAAQAKLLSQDPG 333

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            +     LG  S + + D +  D++  L KKG+ +  IH SFG+ +  + + +       
Sbjct: 334 SANQGGDLGWASPD-MYDPAFRDALLKL-KKGEISQPIHSSFGWHLIQLLDTRQVDKTD- 390

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
                      R+    +  +E    ++E  A  
Sbjct: 391 ---AAQKEQAYRMIFNRKFAEEAQTWMQEQRASA 421



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/329 (13%), Positives = 113/329 (34%), Gaps = 34/329 (10%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
            S L    +N ++         +   +       +   N++L  A++   +  + + +  
Sbjct: 43  NSLLQSVKLNAQQAGQQLPDDAT---LRHQITDRLIMDNIILQMAQKMGIQ-VTDEQLEQ 98

Query: 198 NNRHVPAIADPSNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              ++ A    S   L     +     + YR+   K +       +E  +++ +   E+ 
Sbjct: 99  AITNIAAQNRMSLDQLKSQLAYEGLNYNTYRSQIRKEMLISEVRNNEVRRRVTVLPQEVD 158

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAF-------QSLKKGKKFIQLAEE 302
              ++   +    +   +  ++ P      Q++ DEA        + + +G  F +LA  
Sbjct: 159 TLAKQIANQTGENDELNLSHILIPLPENPTQQQVDEAENLATSLVKQISEGADFGKLAIT 218

Query: 303 QGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                  +  G      + +  +L     + A+KG     I    G+ I  V++I+    
Sbjct: 219 YSADSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIR-GGN 277

Query: 362 VSFQEVKKDIANQMRI-------TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
            S    +    + +         ++A  K+ +  ++++     G++  + + + K++S D
Sbjct: 278 KSVSVTETHARHILIKPSVVMTDSQAQAKLADVAQQIKN----GST--DFAAQAKLLSQD 331

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
               +  G           P     L ++
Sbjct: 332 PGSANQGGDLGWASPDMYDPAFRDALLKL 360


>gi|317401961|gb|EFV82563.1| parvulin-type peptidyl-prolyl cis-trans isomerase [Achromobacter
           xylosoxidans C54]
          Length = 258

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 4/158 (2%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFI 297
           + +   K  +S+ ++ AEYEK K++        V  ++  ++K A++    LK  K KF 
Sbjct: 99  MADYLAKHPVSDAKVTAEYEKIKKEQAGKMEYKVRHILVEDEKTANDLLAQLKSNKGKFD 158

Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            LA++  K       G    ++         A ++  L K       +   FG+ I  V 
Sbjct: 159 DLAKKNSKDPGSAEKGGDLGWAPPTNYVQPFAQAVTQLKKGQLVDKPVQTQFGWHIIMVD 218

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + +P       +V+  +   +R    ++  KE  ++ +
Sbjct: 219 DTRPVEFPPLDQVRTQLEEMLRQQTLADYQKELREKAK 256


>gi|187922682|ref|YP_001894324.1| SurA domain [Burkholderia phytofirmans PsJN]
 gi|187713876|gb|ACD15100.1| SurA domain [Burkholderia phytofirmans PsJN]
          Length = 453

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/427 (11%), Positives = 119/427 (27%), Gaps = 78/427 (18%)

Query: 30  LSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
           +       S   TV      V    +               ++Q+   V   ++     L
Sbjct: 28  VQAQALGGSSGQTVDTIAAVVNNGVITRRELDERMSLITRRLNQQNAPVPPLDQ-----L 82

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
            +++L+ +V      Q  ++  +  D   V   + R        N  S DV+ SR+  +G
Sbjct: 83  RQQVLNQMVLERIQLQKAKEDNINIDDATVQKTLERLAA----ANNLSLDVYRSRIEAQG 138

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD----------- 193
           +    +       L+ + +    V   +  S+  +     +    R  +           
Sbjct: 139 VPWSTFTSDARTELTLSRLREKEVDSKVTVSDAEV---ANYIASQRGPNAGATSDLHLQH 195

Query: 194 -YIVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRA------------------------ 226
            ++           + +         + K   N+                          
Sbjct: 196 IFLKAPLNAPETDIEAAQQKAQALLAEAKGGANFDKLAKSNSQAPDASKGGDTGFVAPSK 255

Query: 227 --PEYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF- 277
             PE  +    +         I  ++  E+    ++   +  S +        V  ++  
Sbjct: 256 LPPEVVKAVSTMRPGEVNPDLIRTNDGFEIVRLVDRRAGQGTSSDAPKLVQTHVRHILLR 315

Query: 278 --------PNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLA 326
                     +++  E  + +  G  F + A    + G S     LG  S          
Sbjct: 316 VGDGMSEPQARQKLLEIKKEIAAGGDFAKFAHTYSQDGSSSQGGDLGWISPGETV-PEFE 374

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            ++ +L + G  +  +   +GY +  V   + S   S  +        +   KA +   +
Sbjct: 375 RAMNNL-QDGQISDPVRSEYGYHLIQVLGRRESEG-SVSQQMDLARQAIGQRKAEQAYAD 432

Query: 387 DYKRLEE 393
             + L +
Sbjct: 433 WLRELRD 439



 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 95/271 (35%), Gaps = 19/271 (7%)

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-EKVK 385
           D+I ++   G  T         +I    N + +      ++++ + NQM + +   +K K
Sbjct: 42  DTIAAVVNNGVITRRELDERMSLITRRLNQQNAPVPPLDQLRQQVLNQMVLERIQLQKAK 101

Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
           ED   +++      +++ ++    + S+D+       + V      +    E  L R+  
Sbjct: 102 EDNINIDDATVQ-KTLERLAAANNL-SLDVYRSRIEAQGVPWSTFTSDARTELTLSRLRE 159

Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-------VKKDWKTVKTAEE 498
           K+     D  V + D      ++   I ++        +D       +K      +T  E
Sbjct: 160 KE----VDSKVTVSD-----AEVANYIASQRGPNAGATSDLHLQHIFLKAPLNAPETDIE 210

Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
            + +  Q +L  +K G NF  + K+   +   +   +           + +  V +    
Sbjct: 211 AAQQKAQALLAEAKGGANFDKLAKSNSQAPDASKGGDTGFVAPSKLPPEVVKAVSTMRPG 270

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
            V    I     + + ++ + + G     D 
Sbjct: 271 EVNPDLIRTNDGFEIVRLVDRRAGQGTSSDA 301


>gi|218665253|ref|YP_002427402.1| survival protein SurA [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218517466|gb|ACK78052.1| survival protein SurA [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 436

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 61/469 (13%), Positives = 139/469 (29%), Gaps = 89/469 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               +  +    +  E      L +++L  ++     
Sbjct: 31  DKVVAVVNDNIITSMQLEQRVGAVRARLQTQNPNAMPPEDI----LRRQVLQQMILQDIE 86

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q     G++ D   +   I+       + N  + D     LA +G + + +        
Sbjct: 87  LQIAHRAGIKVDKATLDQAISNL----AQANHLTPDQLRQALANQGQSWERFTHDLED-- 140

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                            +L+D+  +   ENR                      +  + ++
Sbjct: 141 ----------------RILVDRLMQQEVENR---------------VHIGPDEVKTFAQQ 169

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            K      E   +S+ L  +          +                         V   
Sbjct: 170 LK------EMGGVSFDLQQIFIPLPDNPTPDA------------------------VGAA 199

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +++A++A   +  G++F ++A +      +L    LG      +P  ++A ++  L K G
Sbjct: 200 RRDAEQARDHVLAGERFGRVATQVSSGRDALQGGRLGWIKAGELP-PAVAQTLLQL-KVG 257

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           + +PVI G  G+ I  + ++K       +     I  +   +   ++ +   + +++ L 
Sbjct: 258 EISPVIPGPTGFHIFKLLDVKHGQPTVTEVKTAMIVLRAGNSLQLQEAEARAQDIQQALQ 317

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
            GT   E++R               G    G+           L R      P      +
Sbjct: 318 SGTRFSELARSYSQDPRTAANGGEMGWVAPGQ-------LPDSLERTLLTLQPGGVSSPI 370

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
            + +  Y+      S   R + +EE    +    +       V  + ++
Sbjct: 371 RVGNAIYIL----HSQAQRQQAVEE--KQIMAAARMQLYNRIVHERMDE 413


>gi|284043450|ref|YP_003393790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei
           DSM 14684]
 gi|283947671|gb|ADB50415.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei
           DSM 14684]
          Length = 379

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/436 (11%), Positives = 123/436 (28%), Gaps = 137/436 (31%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW--GLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
           M   IR       A     ++  P  +   G  D+  +   S+ + SV    V  + + +
Sbjct: 1   MAHSIR------AALTVGALVLCPLAVSACGGDDSSGNDVPSNAIASVDGTPVTKAEYEH 54

Query: 59  SWKQELGMISQKIGFVVNSERARS--------------------------------VGLD 86
            ++      +     V+    + +                                  L 
Sbjct: 55  LYEVNAKGAAGGGSAVIPDPPSYTACAARLARQAAAARGRGRPTESQLVAQCRQLDEALR 114

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
            + +  LV    LD   E +G+E     V      +  F    +          L + G+
Sbjct: 115 NRSVAQLVQMVWLDGETERLGIEVTDADVERAKRAT--FPRAGDM------QRTLRQLGM 166

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
            E++           T +                       + R                
Sbjct: 167 TERDVEFQLRFNQLSTRLTEHL-------------------QRR--------------PV 193

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           D  +A ++ ++ + ++ +  PE + +                                  
Sbjct: 194 DVGDAEISAYYARNREQFAVPERRDLEL-------------------------------- 221

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGK---------KFIQLAEEQGKSLSDISLGSFSK 317
                   ++   + +A++A ++++ G             +L++  G  L  ++ G   +
Sbjct: 222 --------ILTRTETQANDAKRAVEGGTAWAAAARRWSTDELSKGNGGRLLGVARGQQDR 273

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
                    D+    A++G     + G FG+ +  V+ + PS   +  E    I   +R 
Sbjct: 274 AL-------DAAAFDARRGVLLGPVRGQFGWYLVRVTRVTPSKQSTLAESSAQIRELVRQ 326

Query: 378 TKASEKVKEDYKRLEE 393
            ++   ++E  +  +E
Sbjct: 327 QESQRAMQEYARTFQE 342



 Score = 37.3 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 5/42 (11%), Positives = 17/42 (40%)

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
            +  V++    P++   L E    +++  +  ++   +   A
Sbjct: 296 GWYLVRVTRVTPSKQSTLAESSAQIRELVRQQESQRAMQEYA 337


>gi|317495597|ref|ZP_07953965.1| ppic-type ppiase domain-containing protein [Gemella moribillum
           M424]
 gi|316914411|gb|EFV35889.1| ppic-type ppiase domain-containing protein [Gemella moribillum
           M424]
          Length = 308

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 112/340 (32%), Gaps = 90/340 (26%)

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
           E   +  L K     ++    LD++   I  +A   ++            +      + F
Sbjct: 44  ESIGASQLSKTATSMMIQKVLLDKYKGKIDEKAIEEQLQKA-------QTQYGG--KEKF 94

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
              L ++G    +Y D      ++T ++  + G                           
Sbjct: 95  EQLLKQQGFTLDKYKDGLKVKAAQTLLINDYTGT-------------------------- 128

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                      +   L + +EK K  Y       +++IL  V        +S+++     
Sbjct: 129 -----------NEDKLKENYEKNKHQY------HLAHILISVKSNSNPNGLSDED----- 166

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLG 313
                                 +K+A+E  + +K G+ F  LA+E     +       LG
Sbjct: 167 ---------------------AKKKAEELHKKIKDGEDFATLAKENSNDTANASNGGDLG 205

Query: 314 SFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
             SKE         ++ ++L K    + V+  SFGY I  V + K +   +F E+K  +A
Sbjct: 206 WSSKEDNSFVKEFKEAAYALTKD-KVSDVVKTSFGYHIIKVLDEKDA---TFDEMKATLA 261

Query: 373 NQMRITKASE---KVKEDYKRLEEFLALGTSMDEISRREK 409
            +       +    V +  K+L E   + +S  ++    K
Sbjct: 262 EKAAEEAVKKDSTVVSKALKKLFEEYNVKSSNKDVEAYLK 301


>gi|87119766|ref|ZP_01075663.1| peptidyl-prolyl cis-trans isomerase SurA [Marinomonas sp. MED121]
 gi|86165242|gb|EAQ66510.1| peptidyl-prolyl cis-trans isomerase SurA [Marinomonas sp. MED121]
          Length = 416

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 109/353 (30%), Gaps = 63/353 (17%)

Query: 84  GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
            + ++IL+ +++      +   +G+          +           K         LA+
Sbjct: 61  NVRRQILNQMINETLQTNYANRLGIRISEQEANQAVLNVAA----KMKLDLAGLKVALAQ 116

Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLL------DQAKRFYFENRSVDYIV 196
           +GI+   Y +     +    V G  V   +  S+  +      D+A     +   + +I+
Sbjct: 117 QGIDYSIYRNQIKNEILLGKVKGQVVRQRIIISDQEIEDFLNSDEALAKNNDQVHLRHIL 176

Query: 197 LNNRH--------VPAIADPSNAVLTQWFE---KYKDNYRAPEYKRISYILFD--VHEKE 243
           + +          +      +N     + +    Y     A E   + +   +       
Sbjct: 177 IRDNASSQSADQILTIKEKITNE--QDFIDQAIAYSSGQAALEGGDLGWRPLNQLPLLFI 234

Query: 244 KKIEISNDELQAEYEKNKEKY------------FSPEIRTVEQLVFP---------NQKE 282
           K +  +N  L    E +  ++               E      ++            +  
Sbjct: 235 KSLNANNGPLYGPIESSAGQHLLWLKEKKTASNALQEQTKSRHILLSANEIRNQTQTKAA 294

Query: 283 ADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
            +  +Q L KG+ F  LA+E    +G +L    L   +K  +       ++      G+ 
Sbjct: 295 LEAIYQRLMKGQDFATLAKEFSEDKGSALKGGDLDWTAKGTMV-PEFE-AVMKATSVGEI 352

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +      +G+ I  V   +           +DI+++++   A   +    + L
Sbjct: 353 SKPFRSQYGWHILKVEGRR----------SQDISDKIKQVNAKNTLIARKQDL 395



 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 93/305 (30%), Gaps = 45/305 (14%)

Query: 153 DHYTKMLSRTDVVGMFVG------GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
           D+  + +    +            G+R S    +QA         +D   L         
Sbjct: 60  DNVRRQILNQMINETLQTNYANRLGIRISEQEANQAVLNVAAKMKLDLAGLKVALAQQGI 119

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           D                YR      I           ++I IS+ E++     ++    +
Sbjct: 120 D-------------YSIYRNQIKNEILLGKVKGQVVRQRIIISDQEIEDFLNSDEALAKN 166

Query: 267 PEIRTVEQLVFPNQKEADEAFQ------SLKKGKKFIQLAEEQGK---SLSDISLGSFSK 317
            +   +  ++  +   +  A Q       +   + FI  A        +L    LG    
Sbjct: 167 NDQVHLRHILIRDNASSQSADQILTIKEKITNEQDFIDQAIAYSSGQAALEGGDLGWRPL 226

Query: 318 EYIPDVSLADSIFSL-AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK------- 369
             +P + +     SL A  G     I  S G  +  +   K +     ++ K        
Sbjct: 227 NQLPLLFIK----SLNANNGPLYGPIESSAGQHLLWLKEKKTASNALQEQTKSRHILLSA 282

Query: 370 -DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
            +I NQ +   A E + +   + ++F     ++ +    +K  ++    +D+  K     
Sbjct: 283 NEIRNQTQTKAALEAIYQRLMKGQDF----ATLAKEFSEDKGSALKGGDLDWTAKGTMVP 338

Query: 429 EVAAI 433
           E  A+
Sbjct: 339 EFEAV 343


>gi|281425607|ref|ZP_06256520.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris F0302]
 gi|281400194|gb|EFB31025.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris F0302]
          Length = 713

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 91/725 (12%), Positives = 196/725 (27%), Gaps = 133/725 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56
           L  IR  S+       + +    F+     +A  S   +       V  V  +K+  + F
Sbjct: 4   LGKIR--SKGAFLMGIIGLGIFAFI---AEEAFRSCESTRNNARQQVGEVLGEKINVNEF 58

Query: 57  INSWKQELGMI-SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
                +   +I  Q+    +N E+     +   + +  V    ++   + +GL      +
Sbjct: 59  QKLVDEYTEVIKMQQGAEALNDEQLNQ--VKDMVWNTFVQTKIVEHEAKQLGLRVTDAEL 116

Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLA-------REGINEKEYI-------- 152
                      + ++P  + +  +F  +     LA             ++Y         
Sbjct: 117 QNVLKAGTNPMLLQTPFVNQQTGRFDANALQKFLAEYDTQRSANPQMAQQYETIYKYWTF 176

Query: 153 --DHYTKMLSRTDVVGMFVGGMRPSNLLLD------------QAKRFYFENRSVDYIVLN 198
                 + L       +    +  + +               Q   F + +   D + + 
Sbjct: 177 IEKTLRQQLLAQKYQSLLAHCLLSNPVEAKMAFKEENNESNIQLAAFPYSSIQDDKVQIT 236

Query: 199 NRHVPAI-----------------------ADPSNAV---LTQWFEKYKDNYRAPE---- 228
              + A                          PS A    L + F  Y  +  + E    
Sbjct: 237 ESDLKAKYDELKPRFQQYVESRDIKYVDFQVTPSAADKNALQKEFAGYAKDLASAEDPSA 296

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNK----------------------EKYFS 266
             R S  L +             ++ A+ +                          K   
Sbjct: 297 VVRKSSSLVNYLGIPVGKTAFPSDIAAKLDSMAVGHTSGVIENTMDNTLNVIRLIAKQQL 356

Query: 267 PEIRTVEQLVFP------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
           P+     Q+           K AD  + +LK G  F  +A++ G++         + +  
Sbjct: 357 PDSIEYRQIQVGGASADVAHKSADSIYAALKAGADFEAVAKKYGQT---GQKAWMTTQQY 413

Query: 321 PDVSLAD-------SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
                 D       +  ++    +   ++    G +I  V + K         V   I  
Sbjct: 414 QSAPSMDNDTKNYITSLNMMAVNETKNIVL-PQGNIIVQVLSRKAMTDKYIAAV---IKK 469

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
            +    ++E   + Y +   F++   + DEI +        +   +          +A I
Sbjct: 470 NIVF--SNETYSKAYNKFSSFVSANQTGDEIIKNAAKNGYRVQEANDI--TTAQHYLANI 525

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWK 491
                 L  +F               +   +   + +  P   R L+  +V   VK +  
Sbjct: 526 HGTRDALKWLFEAKQGAVSQMYTCGDNDHLLVAVLTKIHPVGYRSLDDSQVKEMVKAEVM 585

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
             K AE + SK N  V   +        +      +      +                 
Sbjct: 586 KDKKAEMLMSKLNG-VSTLAAAKAKGAKVADVNQVTFAAPVFVTLTGASEPALS----GA 640

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
           V++          ++      +F+VTN  + P +  DK +    +        + +  L 
Sbjct: 641 VYATAKGKFSTKAVKGNAGVYMFQVTNKTMRPGKFDDKTMEQKLRQKTMQYAGNFMNELY 700

Query: 612 SQYSV 616
               V
Sbjct: 701 INAKV 705


>gi|311104694|ref|YP_003977547.1| PPIC-type PPIASE domain-containing protein 1 [Achromobacter
           xylosoxidans A8]
 gi|310759383|gb|ADP14832.1| PPIC-type PPIASE domain protein 1 [Achromobacter xylosoxidans A8]
          Length = 258

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 64/158 (40%), Gaps = 4/158 (2%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FI 297
           + +   K  +S+ ++ AEYEK K++        V  ++  ++K A++    +K  K  F 
Sbjct: 99  MADYLAKHPVSDAKVTAEYEKIKKEQAGKMEYKVRHILVEDEKTANDLLAQIKSNKSKFN 158

Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            LA++  K       G    ++         A ++  L K       +   FG+ I  V 
Sbjct: 159 DLAKKNSKDPGSAEKGGDLGWAPPTNYVQPFAQAVTQLKKGELVDKPVQTQFGWHIIMVD 218

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + +P       +V+  +   +R    ++  KE  ++ +
Sbjct: 219 DTRPVEFPPLDQVRPQLEEMLRQQTLADYQKELREKAK 256


>gi|37524613|ref|NP_927957.1| peptidyl-prolyl cis-trans isomerase SurA [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|81707805|sp|Q7N8V5|SURA_PHOLL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|36784037|emb|CAE12906.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase surA) (PPIase) (Rotamase C) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 433

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/401 (13%), Positives = 119/401 (29%), Gaps = 66/401 (16%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
              V    V  S   N  +  +   +Q  G  +  E+     L  +IL+ L+    L Q 
Sbjct: 29  AAVVNNGVVLESDINNRLQS-VKRDAQHAGQQIPDEQ----TLRHQILERLIIDNILLQM 83

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            + +G+      +   IA         N  + D    R+A +G+N   Y D   K +   
Sbjct: 84  AKQMGITIPDQALDSTIANIAA----QNHITVDQMKHRIAADGMNFDTYRDQIRKEMLIA 139

Query: 163 DVVGM-FVGGMRPSNLLLDQAKR-FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
           +V        +      +D   +    +N +   + +++  +P   +P  A + +     
Sbjct: 140 EVRNNEVRRRVTILPQEIDALVKQISNQNTNDTELNISHILIPLPENPDQAQMEKAMTVV 199

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE---- 268
           +    +     + +    +        +           EL   + +  +          
Sbjct: 200 QKI-MSELKHGVDFGKLAIAYSADPQALKGGNMGWSRLQELPTLFAEQLQLAQKGAVVGP 258

Query: 269 -------------------------IRTVEQLVFPN-----QKEADEAFQSLKKG----- 293
                                          ++          +A    Q +        
Sbjct: 259 IRSGVGFHILKVNDIRGGNPTIAVTEVHARHILLRTSPVMTDDQARTKLQQIASDIRSGK 318

Query: 294 KKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
             F   A+E     G +L    LG  +   I D +  D++  L  KG+ +  +H SFG+ 
Sbjct: 319 TDFADAAKEFSDDPGSALRGGDLGW-TAPDIYDPAFRDALMRL-NKGEISQPVHSSFGWH 376

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +  + + +        + K      +   K +E+ +   + 
Sbjct: 377 LIQLLDTRKVDKTDVAQ-KDRAYRMLFNRKFTEEAQSWMQE 416



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 78/239 (32%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
             D YR    K +       +E  +++ I   E+ A  ++   +  +     +  ++ P 
Sbjct: 124 NFDTYRDQIRKEMLIAEVRNNEVRRRVTILPQEIDALVKQISNQNTNDTELNISHILIPL 183

Query: 280 QKEADEAF------------QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
            +  D+A               LK G  F +LA         +  G+     + +  +L 
Sbjct: 184 PENPDQAQMEKAMTVVQKIMSELKHGVDFGKLAIAYSADPQALKGGNMGWSRLQELPTLF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKD-IANQMRITKASEKV 384
                LA+KG     I    G+ I  V++I+      +  EV    I  +       ++ 
Sbjct: 244 AEQLQLAQKGAVVGPIRSGVGFHILKVNDIRGGNPTIAVTEVHARHILLRTSPVMTDDQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +  + +   K  S D       G           P     L R+
Sbjct: 304 RTKLQQIASDIRSGKT--DFADAAKEFSDDPGSALRGGDLGWTAPDIYDPAFRDALMRL 360


>gi|317008847|gb|ADU79427.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori India7]
          Length = 299

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E   ++++   ++ N       D +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIDQAIRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KK++I   E+Q  Y+ NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKVQIPEKEMQDFYDANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGNYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++++ K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|300871743|ref|YP_003786616.1| hypothetical protein BP951000_2140 [Brachyspira pilosicoli 95/1000]
 gi|300689444|gb|ADK32115.1| hypothetical protein BP951000_2140 [Brachyspira pilosicoli 95/1000]
          Length = 489

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 124/365 (33%), Gaps = 69/365 (18%)

Query: 8   ASRTWVAKIF--LV------VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV---PFSSF 56
             ++ V K    L       +L V FL+            + T+ SV    +     S +
Sbjct: 10  KKKSPVVKTLQWLGVSAVSILLIVYFLVI----DTRGSQKTPTIGSVNGTPIYYTSTSPY 65

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +++ E+    Q+ G  +N++      ++       V+   LD       +      + 
Sbjct: 66  GKAFR-EIENYYQQFGIPMNADI--YANIEDLAFRRAVTTILLDDLAAK-NITVSDKIIL 121

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPS 175
             +     F   +  ++   + + +     +EK  I+   K       + +     ++ +
Sbjct: 122 QYMQS--QFIDSNGNYNQMAYDAFIKNTPQSEKIRIEKDLKETVMAQTIALELFNSVKIN 179

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +L L++        R ++ + ++   +   AD     + ++F   K N+       IS+ 
Sbjct: 180 SLELERQYIKNLTKRDIEMLYIDASEIVKNADILETDIDKYFNDNKTNFV---QADISW- 235

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                                                  ++  N K+A+  +++LK    
Sbjct: 236 ---------------------------------------ILLANAKDAENVYKTLKNDIT 256

Query: 296 -FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK--KGDFTPVIHGSFGYVIAH 352
            F +   E+    +D  LG  ++  I D ++AD +F+  +         I+ +  Y +  
Sbjct: 257 LFDKTVAEKSIYTNDYHLGYVTRMEI-DKNIADRVFTNTQITTNTLLSPINVNGVYYVVL 315

Query: 353 VSNIK 357
           V++I+
Sbjct: 316 VNDIR 320


>gi|261414929|ref|YP_003248612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371385|gb|ACX74130.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327509|gb|ADL26710.1| peptidyl-prolyl cis-trans isomerase SurA [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 427

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 62/476 (13%), Positives = 136/476 (28%), Gaps = 88/476 (18%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
              V  + +  S F+N+  +              +         + +L+ ++    L   
Sbjct: 28  AAVVDGKPIMRSEFMNNLYR--------FQDTPEAASMTEQQQKEAVLNRMIEEKVLLSR 79

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSR 161
           I+   +      V   +           K         +  + G++  +Y +   K +  
Sbjct: 80  IDRDSIVISENEVDQRVTSHLQSIAASQKIDMATLEKAVRAQLGLSMIQYREQLGKQIRS 139

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
              +                        R +    ++         P+   +  +++ YK
Sbjct: 140 HMEISRV---------------------RQLHVGTIH---------PTKKEVDVFYKDYK 169

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           D+      ++ + +L    +   K +                           +V   + 
Sbjct: 170 DSL----PRQFNCVLLSHIQLPIKPD-------------------------SMIVDSVKH 200

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
            A+    SL  G KF  LA+   +         LG F +  + D +   +I  L      
Sbjct: 201 VAEALIDSLNLGIKFELLAQRHSQDSTAAKGGDLGYFKRGLL-DPAFEKAIERLKNGHYA 259

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
           +  +    G+ IA V   K     S     + +   +   K S  V      L   +   
Sbjct: 260 STPVKTDLGWHIARVLGRKEDGVRS----AQILLRTIPTAKDSAAVLALADSLRNNI--- 312

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            S DE ++  K  S D       G     +     P     +  +      + +     +
Sbjct: 313 KSKDEFAKAAKKFSEDKSSNFQGGLLGWFQRNEMEPAYVDPVANL-----NVGEISEPVM 367

Query: 459 PDGSYMWVQIKESIPARDRKLEE----VLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
            DG+Y   ++ +S   R+  LEE    +        +  K  + +     ++++E 
Sbjct: 368 IDGAYHLFRLDDSRQVRELTLEEDYGKIELMAATHLENEKLQKLIQKWRKEVLVEI 423


>gi|257453206|ref|ZP_05618505.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 3_1_5R]
 gi|317059740|ref|ZP_07924225.1| predicted protein [Fusobacterium sp. 3_1_5R]
 gi|313685416|gb|EFS22251.1| predicted protein [Fusobacterium sp. 3_1_5R]
          Length = 549

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 83/567 (14%), Positives = 194/567 (34%), Gaps = 91/567 (16%)

Query: 4   IIRKASRTWVAKIFLVVLFVPFLIWGLSDALF------SVSGSSTVVSVGRQKVPFSSFI 57
            IRK  +  + K+ + ++ +  +  G            S   +     +  +KV      
Sbjct: 2   AIRKFRK--IMKLVIFIVAIAMIGSGAWLTFTNLLQHHSAGETQYAYQLNGEKVSKVKIA 59

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
                 +  +++  G    S+   S+         +++     Q  ED+ ++     +  
Sbjct: 60  REENNLMEQLNKM-GQGKTSKELVSL----IAFQKVINDELTLQLAEDMKIKVPSSEIKE 114

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-- 175
           E  +      +++  + + F   L+ +G ++K +     + L    V+  F    + S  
Sbjct: 115 EYEK-----IENSIGNKEQFKRMLSVQGYSKKSFKAMLEENLLLQKVMEKFAEEAKKSGK 169

Query: 176 -------NLLLDQAKRFYFENRSVDYIVLNNRHVPAI----------------------- 205
                    L  +      +  S +Y  L  + V                          
Sbjct: 170 DGNLLFQEALAKKRNEMKIDKLSPEYEKLQLKVVEEKDGFKITNVDMADRVTQLMLMTGE 229

Query: 206 --ADPSNAVLTQWFEKYKDNYRAPEYKRI------------SYILFDVHEKEKKIEISND 251
             A  +  V  Q+ E      +A E   +             Y      + + +++I   
Sbjct: 230 EEAKVTEEVKKQFEEGIAFAKKAQEKGVLISKDLPINVQLAEYGKAFFEKLKSEVKIDEV 289

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVF----------PNQKEADEAFQSLKKGKKFI---- 297
           EL   ++ N  +Y       V+  V             +K+A+E  +SLKK + F     
Sbjct: 290 ELSRFFQANHNRYNQHASIDVDVAVLKIVPSKEDIAAIEKKAEETLKSLKK-ENFAKIGA 348

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            L ++  +++    LG F K  +      ++ FS  +   +  VI   FG  + ++  ++
Sbjct: 349 DLQKKSPETVIYEELGWFEKGAMVK-EFEEAAFSSKEAQIYPKVISTQFGKHLLYIQEVQ 407

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
            +   +   + +++A+Q  I K+ ++ +   ++L++      ++  I++   + +     
Sbjct: 408 ENKVKAAHILFREVASQASIDKSLKEAESIKEKLDKKEVTFETLKNINKNL-LFAHTFTG 466

Query: 418 VDFAG---KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           VD +G     V  K +    Y  ++       DD   K   + L           +    
Sbjct: 467 VDKSGVIQGFVTDKALVDTMYAAEMNKVQIYSDDYAKKAGIIYL-------FSKTKQEED 519

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSS 501
           +   LEEV   V+ ++++ +  +E+  
Sbjct: 520 KIVSLEEVQDRVRDEYRSWRAQQELQK 546


>gi|91204225|emb|CAJ71878.1| similar to peptidyl-prolyl cis-trans isomerase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 311

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 103/328 (31%), Gaps = 75/328 (22%)

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
           ++    +++      + ++I++ L++   L+ FI+  G+      +  E+         D
Sbjct: 49  RLNMFKDADVETYNAIRQEIIEQLITDILLEDFIDKQGIVVTPMEMSRELLLIKK-EIAD 107

Query: 130 NKFSHDVF-VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
           N+   D F    LA  G N  ++       L+        +                   
Sbjct: 108 NEGEADAFLRDMLASIGSNLYDFEKTIKHSLALEKYFKGSLDS----------------- 150

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
                                   L ++FEK K ++   E  R+S+I  D  +      +
Sbjct: 151 ----------------------QNLKRFFEKNK-HFFNGEAVRVSHIFIDTKKFNSGDMV 187

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---K 305
                                  V QL+       +     L KG  F +LA E      
Sbjct: 188 E---------------------KVAQLI-------NTLKSELDKGSDFEELAREYSDCPS 219

Query: 306 SLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           +     LG    +    D     + FSL + G  +  +   +GY +  V+  K    V+F
Sbjct: 220 ASKGGDLGFIQRRGGTYDEPFLSTAFSL-RIGKVSEPVKSEYGYHLIKVTGKKEGVAVNF 278

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLE 392
           ++V  D+ + M   +    +K      +
Sbjct: 279 EDVIDDVRSTMLDEEILGLLKRLRSEAK 306



 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLG--ASLLTTNQINRMDNENKFFGYDGISQV 552
             E+V+   N L  E  K G +F ++ +      S      +  +      +    +S  
Sbjct: 186 MVEKVAQLINTLKSELDK-GSDFEELAREYSDCPSASKGGDLGFIQRRGGTYDEPFLSTA 244

Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
           FS  +  V   P+++   Y + KVT  K G     +  I  +   M  + +  ++  L+S
Sbjct: 245 FSLRIGKV-SEPVKSEYGYHLIKVTGKKEGVAVNFEDVIDDVRSTMLDEEILGLLKRLRS 303

Query: 613 QYSVTVHD 620
           +  + +  
Sbjct: 304 EAKIEIIQ 311


>gi|320105835|ref|YP_004181425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
           saanensis SP1PR4]
 gi|319924356|gb|ADV81431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
           saanensis SP1PR4]
          Length = 645

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 108/350 (30%), Gaps = 75/350 (21%)

Query: 47  GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
             Q +  S      +Q    + Q      +    +     K +L +L+    L    +++
Sbjct: 87  NDQIISRSDVERQEQQLQAELRQGGAQAGDPAERQ-----KNMLRDLIDQQLLLSRGKEL 141

Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
           G+      +   I R      +++  S +        +G++ +++               
Sbjct: 142 GIT-GDTEL---IRRLDDIRKQNHLDSMEDLEKAARAQGVSFEDFKAQIR---------- 187

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
                +  S+++ D+  R                        + A   ++++ +KD +  
Sbjct: 188 ---NSIITSSVVRDEVSRHLQM--------------------TQADERKYYDAHKDQFAQ 224

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
            E  R+S IL  +        I+                              Q +A+E 
Sbjct: 225 QEQVRLSEILIPLPADATDAAIA----------------------------QAQAKAEET 256

Query: 287 FQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
              ++ G  F  +A+       +     LG F +  +    L +  F L K GDFT  I 
Sbjct: 257 AAKIRAGAAFADVAKTTSGGPTAAQGGDLGFFKRGGLA-PVLEEKTFPL-KVGDFTAPIR 314

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
              G+VI   +  + +      +V + +   M   +    ++     L E
Sbjct: 315 TRQGFVILQATEHQEAGVPPLAQVDQQVQEAMYQDQMQPALRAYLTHLRE 364



 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 5/124 (4%)

Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
           +      + G  F D+ K            +    +          + F   V      P
Sbjct: 254 EETAAKIRAGAAFADVAKTTSGGPTAAQGGDLGFFKRGGLAPVLEEKTFPLKVGDF-TAP 312

Query: 565 IENGLSYVVFKVT---NSKVGPVQEKDKFIS-YLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
           I     +V+ + T    + V P+ + D+ +   + Q   +  L + + +L+    + +  
Sbjct: 313 IRTRQGFVILQATEHQEAGVPPLAQVDQQVQEAMYQDQMQPALRAYLTHLREDAYIDIKP 372

Query: 621 NLIQ 624
             + 
Sbjct: 373 GFVD 376


>gi|304311712|ref|YP_003811310.1| Peptidyl-prolyl cis-trans isomerase [gamma proteobacterium HdN1]
 gi|301797445|emb|CBL45665.1| Peptidyl-prolyl cis-trans isomerase [gamma proteobacterium HdN1]
          Length = 439

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/398 (13%), Positives = 125/398 (31%), Gaps = 81/398 (20%)

Query: 51  VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
           +  S  +N  +Q    I+++      +E      L  ++L+ +++ +   Q  E +G+  
Sbjct: 49  ILQSELLNRTRQIRIQIAKR-----GTEAPDEAKLQAQVLERMITESAELQLAEKMGVRV 103

Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA-REGINEKEYIDHYTKMLSRTDVVGMFV 169
           D   +   +A       + N  S + F + +   EG+    Y +   + ++   +     
Sbjct: 104 DDNAINEALANI----ARQNNLSLEQFQNVIEHEEGMTFASYREQVRREMTAHQL----- 154

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
                             + R V           +    S+  +  +             
Sbjct: 155 ------------------QQRRV----------ASRIKISDQDIDAFLASDLGKENLAPD 186

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
             + +IL  VH+      I                               +  ADE ++ 
Sbjct: 187 YHLGHILIAVHDDSDAASIDQA----------------------------KAMADEVYRQ 218

Query: 290 LKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           LK G  F   A         L    LG      +P    AD + ++ + GD +  I    
Sbjct: 219 LKSGADFAATAVRYSGDDKALEGGDLGWRKAGQLP-TLFADVVVNMHR-GDISAPIRSPS 276

Query: 347 GYVIAHVSNIKPSFTV--SFQEVKKDIA--NQMRITK-ASEKVKEDYKRLEEFLALGTSM 401
           G+ I  +   +    +     +V+  +   N++R    A    ++  +RL++      ++
Sbjct: 277 GFHIIKILETRGGTEMLVPQAQVRHILIKPNEIRSDADAHALAEDIRRRLQQNKGDFAAL 336

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
            +    +   +++   + +    V   E   +   E++
Sbjct: 337 AKTYSDDTGSALEGGSLGWVNPGVMVPEFEKVMNSEKI 374


>gi|187251884|ref|YP_001876366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Elusimicrobium
           minutum Pei191]
 gi|186972044|gb|ACC99029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Elusimicrobium
           minutum Pei191]
          Length = 390

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/390 (12%), Positives = 115/390 (29%), Gaps = 47/390 (12%)

Query: 47  GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
             + +  S F           +      +  +    + L+K++LD +++   L Q  E  
Sbjct: 33  NGKPILQSDFDKVAGAFEAQYTAAAPK-LMEQPGVKLKLEKEVLDQMINDELLFQAAEKE 91

Query: 107 GLEADHGRVWGEIAR-----SPLF----HGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
           G++A    +   + +      P           K     F + L +EGI++K++ D   K
Sbjct: 92  GVKAREDEIDEAVKQAKDALIPAADEKGKPISEKERTKQFDAALKKEGISQKQFRDKLKK 151

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            +     V   +                                V  +     A     +
Sbjct: 152 QIMSRKYVETAI--------------------------------VTKVKPVEEADAKALY 179

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           ++ K   +    K       +  ++ + I +  ++L A   +    +           + 
Sbjct: 180 DQVKAVMKKDSKKTALIKPEEHKKEVEAIAMRLEQLSAPKVRIGHIFLEAPKAAGADKIK 239

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLA 333
             +  A E  + +  G  F     +     +  S G               +    FSL 
Sbjct: 240 EKEALAKEIKKKIDGGMDFSTAVRQFSDDKNSQSTGGDMILIKGAPNTPKEIDTKAFSL- 298

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             G  +  I   FG+ I  +     +  +++++V ++    +   +    + E  K L  
Sbjct: 299 DVGKVSDPIKTDFGFHIIKIKEKSAAEEITYEKVAREFGQYIAAQRIQVAINEHIKDLNS 358

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGK 423
              +  + D  +  +   ++         K
Sbjct: 359 KAEIKINKDFSALEKPAANVKEEPAKTEPK 388


>gi|317176991|dbj|BAJ54780.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           F16]
          Length = 299

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 13/175 (7%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
              + +      E+ KKI+I   E+Q  Y  NK+++F  +      ++   + EA     
Sbjct: 116 QALVEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQFFVKQEAHARHILVKTEDEAKRIIS 175

Query: 289 SL------KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336
            +      KK  KFI+LA       +         LG F K  +     + + F+L    
Sbjct: 176 EIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGD 234

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                +   FGY I ++ +     T ++ + K  I   ++     E++ +  + L
Sbjct: 235 YTKTPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQKIEEL 289


>gi|15644804|ref|NP_206974.1| cell binding factor 2 [Helicobacter pylori 26695]
 gi|2499779|sp|P56112|Y175_HELPY RecName: Full=Uncharacterized protein HP_0175; Flags: Precursor
 gi|2313264|gb|AAD07245.1| cell binding factor 2 [Helicobacter pylori 26695]
          Length = 299

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E   ++++   ++ N       D +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIDQAIRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KK++I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++++ K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|258545949|ref|ZP_05706183.1| peptidyl-prolyl cis-trans isomerase SurA [Cardiobacterium hominis
           ATCC 15826]
 gi|258518827|gb|EEV87686.1| peptidyl-prolyl cis-trans isomerase SurA [Cardiobacterium hominis
           ATCC 15826]
          Length = 433

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/392 (13%), Positives = 122/392 (31%), Gaps = 59/392 (15%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V  + +         +     + +++          +  L+ ++L++++    L Q  + 
Sbjct: 46  VNDEAITRRQLTQEIEAARRNLPKELKLP-------AGELEHQLLEHVIMNHLLAQIEKK 98

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
           +GLE     +   IA+     G++      ++       G++   + +   K L++  + 
Sbjct: 99  VGLEISEDELNTAIAQIA---GRNKVSEQKLYAQAQRDTGLSRDAFREQVRKSLAQEHMK 155

Query: 166 GMFVGG--MRPSNLLLDQAKRFYFENRSVD-----YIVLNNRHVPAIADPSNAVLTQWFE 218
              VG         + +   +   E  S        I L      + A   +A + +  +
Sbjct: 156 EGMVGADINITERQVDEYIAKLAREQGSTIHVQDLLIPLPEGDAQSRAGEVDAKIREVSQ 215

Query: 219 KYKDNY------------------------RAPEYKRISYILFDVHEKEKKIEISNDE-- 252
             +D+                         R P     +       E  +   + +D   
Sbjct: 216 ALRDSGGNLQQASARVAGARYNDLGDVNLGRIPPRFARALAKLGAGEIVESPVVDDDGMH 275

Query: 253 -LQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKKGKKFIQLAEEQ 303
            L+   + + E  ++     V  ++          ++   D  ++ L+ G  F  LA   
Sbjct: 276 FLKVASKHSAEGNYTLAEADVSHILLRNNDGRDDNSKARIDAIYRELQAGADFASLARRY 335

Query: 304 GKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            +          LG  S +      LA +I      G  +  I   +GY I  V   + S
Sbjct: 336 SEDAQSAAKGGDLGWVSADQFGG-ELAQAI-ETQAVGSISKPIKTPYGYHILLVRERRQS 393

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              S   V++ I   +      E  ++  + L
Sbjct: 394 -DKSEAVVREQIKRNLYAKALDEAWQQRLQSL 424


>gi|117617860|ref|YP_855486.1| peptidylprolyl cis-trans isomerase SurA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559267|gb|ABK36215.1| peptidylprolyl cis-trans isomerase SurA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 432

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 56/432 (12%), Positives = 134/432 (31%), Gaps = 60/432 (13%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K  + +L           A  +      V++V  + V  +S   +  Q++   +Q+ G  
Sbjct: 3   KTLISLLTAGLFGAMSQGAFAAPELMDKVLAVVNKDVVLASQQEALVQKVKASAQESGQS 62

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           +         L K+ LD L+  +   Q  +  GL+    ++   I         DNK + 
Sbjct: 63  LP----DDATLRKQALDRLIQESLQLQLADRQGLKISDTQLEQAIQSIAA----DNKMTL 114

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           D   ++LAREG+   +Y +   + +   +V        +  S   + Q      +     
Sbjct: 115 DQLRAQLAREGLTYAQYREEVRREILMNEVRRNQVRRRINISEQEVKQVVDILAKQGQQQ 174

Query: 194 YIV-LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY----KRISYILFD---------- 238
               + +  V    +PS   L     K +    A +     ++++               
Sbjct: 175 QQYHVGHIQVALPDNPSAEQLNAAKSKIERILAALKQGADFRKMAIAESSGPKALEGGDW 234

Query: 239 --------VHEKEKKIEISND-------------ELQAEYEKNKEKYFSPEIRTVEQLVF 277
                        + ++ +                +   ++   ++           ++ 
Sbjct: 235 GWMSPQEMPTLMAEAVQGTKKGDIVGPLRSGAGLHIIKVFDTKGQQQVVQTEVRARHILI 294

Query: 278 P-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVS 324
                 ++++A    D     +K GK  F  LAE+  +       G    +S   +    
Sbjct: 295 KPSIILSEEKAKGMLDGILHDIKSGKASFASLAEKYSEDPGSAVQGGELGWSDPNVYVPE 354

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             D +  L + G  +     + G+ I  +   +     +  + ++     +   + +E+ 
Sbjct: 355 FRDMVNRL-QPGQISEPFRTTHGWHIVQLEERRSQDATNKAQ-EQRAYQLIYNRRFTEES 412

Query: 385 KEDYKRLEEFLA 396
           +     L +   
Sbjct: 413 QAWLDELRDEAY 424



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 22/224 (9%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278
             YR    + I       ++  ++I IS  E++   +   ++    +   V  +      
Sbjct: 129 AQYREEVRREILMNEVRRNQVRRRINISEQEVKQVVDILAKQGQQQQQYHVGHIQVALPD 188

Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLA 326
                     + + +    +LK+G  F ++A  +    K+L     G  S + +P  +L 
Sbjct: 189 NPSAEQLNAAKSKIERILAALKQGADFRKMAIAESSGPKALEGGDWGWMSPQEMP--TLM 246

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKAS 381
                  KKGD    +    G  I  V + K    V   EV+     I     +   KA 
Sbjct: 247 AEAVQGTKKGDIVGPLRSGAGLHIIKVFDTKGQQQVVQTEVRARHILIKPSIILSEEKAK 306

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
             +      ++   A   S+ E    +   ++    + ++  +V
Sbjct: 307 GMLDGILHDIKSGKASFASLAEKYSEDPGSAVQGGELGWSDPNV 350


>gi|308063037|gb|ADO04924.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori Sat464]
          Length = 299

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E    +++   ++ N       D +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDQTP-EFKAMMEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KKI+I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++++ K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|153809257|ref|ZP_01961925.1| hypothetical protein BACCAC_03569 [Bacteroides caccae ATCC 43185]
 gi|149128027|gb|EDM19248.1| hypothetical protein BACCAC_03569 [Bacteroides caccae ATCC 43185]
          Length = 713

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 89/710 (12%), Positives = 207/710 (29%), Gaps = 134/710 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     +  V  V    +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117
           +   ++    G    ++  ++  +  ++  + V+   +++  E +GL      +      
Sbjct: 61  EYTEVVKLMRGVTALNDE-QTSQVRDEVWRSYVNNKLIEKEAEALGLTVSTAEIQDILKA 119

Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL---AREGIN--EKEYIDHY----------TK 157
                + ++P F       F  D+    L   A+   +    +Y + Y           K
Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMNESQMPAQYAEQYNNMYKYWSFIQK 178

Query: 158 MLSR---------------------------------TDVVGMFVGGMRPSNLLL----- 179
            L +                                   ++          + ++     
Sbjct: 179 TLIQSRLAEKYQALVSKALISNPVEAQDAFDARVNQYNMLLAAVPYSSVVDSTIVVKESE 238

Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224
                    +  + Y E R + YI +       +   +    D +   L    + Y   +
Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAADRAAIQKEVDEATEQLATTTDDYTS-F 297

Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267
                    Y+    ++     ++     +  + + Y              K   K  + 
Sbjct: 298 IRSVGSEAPYVDLFYNKTAFPSDVVARLDSASVGSVYGPYYNGGDNTINSFKIVAKTAAA 357

Query: 268 EIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319
           +     Q+          +  AD  + ++K G  F++LA++ G     + ++   +    
Sbjct: 358 DSVEFRQIQVYAADAAKTKTLADSIYNAIKGGANFVELAKKYGQTGDSNWMTAAQYEGAQ 417

Query: 320 I--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMR 376
           I   ++    +I S          +  +   VI  V+N K          VK+++     
Sbjct: 418 IDGDNLKFISAINSTGVNELVNLPLGQAN--VILQVTNKKAVKDKYKVAVVKREV----- 470

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
              + E     Y    +F+A   S++++    +     L  +D A        +  +   
Sbjct: 471 -EFSKETYNRAYNDFSQFIAANPSVEKMVANAEEAGYKL--LDRADLYSSEHGIGGVRGT 527

Query: 437 EQLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
           ++ L   F K  P          +    M V +    P   R L+ V   ++ +    K 
Sbjct: 528 KEALRWAFDKAKPGEVSGLYECGESDHMMVVGLVNIKPEGYRPLKAVQEQLRAEIVKDK- 586

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF----FGYDGISQ 551
                 KA +++ +         D  K +  ++  + ++                  +  
Sbjct: 587 ------KAEKIMADMKAANATSLDQYKAMPNAVSDSLKMVTFAAPAYVSALRSSEPLVGA 640

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNK 600
             S         PI+      V +V    K+          + LT M  +
Sbjct: 641 YASVAEVNKLSAPIKGNAGVFVLQVYGKDKLNDTFNAKDEEATLTNMHAR 690


>gi|330830997|ref|YP_004393949.1| peptidylprolyl cis-trans isomerase SurA [Aeromonas veronii B565]
 gi|328806133|gb|AEB51332.1| Peptidylprolyl cis-trans isomerase SurA [Aeromonas veronii B565]
          Length = 434

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 59/432 (13%), Positives = 138/432 (31%), Gaps = 60/432 (13%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K  + +L           AL +      V++V  + V  SS  ++   ++ + +Q+ G  
Sbjct: 5   KTLIALLTAGMFGAMSQAALAAPELMDKVLAVVNKDVVLSSQQDALVNKVKLSAQESGQS 64

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           +         L K+ LD L+  +   Q  E  GL+    ++   I         DNK + 
Sbjct: 65  LP----DDATLRKQALDRLIQESLQLQLAERQGLKISDTQLEQAIQGIAA----DNKMTL 116

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKR-FYFENRSV 192
           D   ++LAREG+   +Y +   + +   +V        +  S   + Q       + +  
Sbjct: 117 DQLRAQLAREGMTYAQYREEVRREILMNEVRRNQVRRRINISEQEVKQVVEILKKQGQQQ 176

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY----KRIS--------------Y 234
           +   + +  +    +P+ A L     K +    A +     ++++              +
Sbjct: 177 NEYHVGHIQIALPDNPTAAQLDAAKSKIERILAALKQGADFRKLAIAESNGPKALEGGDW 236

Query: 235 ILFDVHEKEKKIEISNDELQ-----------------AEYEKNKEKYFSPEIRTVEQLVF 277
                 E    +  +    +                   ++   ++           ++ 
Sbjct: 237 GWMSPQEMPTLMAEAVQGAKKGDIVGPLRSGAGLHIVKVFDTKGQQQVMQTEVKARHILI 296

Query: 278 P-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVS 324
                 ++++A    D     +K GK  F  +AE+  +       G    +S   +    
Sbjct: 297 KPSIILSEEKAKGMLDGILHDIKSGKASFASMAEKYSEDPGSAVQGGELGWSDPNVYVPE 356

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             D +  L + G  +     S G+ I  V + +        + ++     +   +  E+ 
Sbjct: 357 FRDMVNRL-QPGQISAPFRTSHGWHIVQVEDRRSQDATDKAQ-EQRAYQLIYNRRFVEES 414

Query: 385 KEDYKRLEEFLA 396
           +     L +   
Sbjct: 415 QAWLDELRDEAY 426



 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 22/224 (9%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278
             YR    + I       ++  ++I IS  E++   E  K++        V  +      
Sbjct: 131 AQYREEVRREILMNEVRRNQVRRRINISEQEVKQVVEILKKQGQQQNEYHVGHIQIALPD 190

Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLA 326
                     + + +    +LK+G  F +LA  +    K+L     G  S + +P  +L 
Sbjct: 191 NPTAAQLDAAKSKIERILAALKQGADFRKLAIAESNGPKALEGGDWGWMSPQEMP--TLM 248

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKAS 381
                 AKKGD    +    G  I  V + K    V   EVK     I     +   KA 
Sbjct: 249 AEAVQGAKKGDIVGPLRSGAGLHIVKVFDTKGQQQVMQTEVKARHILIKPSIILSEEKAK 308

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
             +      ++   A   SM E    +   ++    + ++  +V
Sbjct: 309 GMLDGILHDIKSGKASFASMAEKYSEDPGSAVQGGELGWSDPNV 352


>gi|146299175|ref|YP_001193766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacterium
           johnsoniae UW101]
 gi|146153593|gb|ABQ04447.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacterium
           johnsoniae UW101]
          Length = 699

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 94/729 (12%), Positives = 209/729 (28%), Gaps = 148/729 (20%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L  IR+ S   +  I L +    F+I  L         S  V S+  + + F  F     
Sbjct: 4   LAKIRQRSALLIGVIALALFA--FIIQDLIGKGTFSQSSKDVGSIDGKDISFEDFRVKVS 61

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE--- 118
                  +K G  + S  A +     ++ D  VS A L    + +GL      +      
Sbjct: 62  N-----LEKSGQGITSTEAAN-----RVWDQEVSIALLSAQFDKLGLRVGEKHLIEVLKS 111

Query: 119 ---IARSPLFHGKDNKFSHDVFV-----------------------------SRLAREGI 146
              I ++P+F      F    F                              + L + G+
Sbjct: 112 DPNIGKNPMFLNAAGVFDVVKFKDYFKANPEAAQYISDKEKDAELNAKFQIYNTLVKSGL 171

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPS--------------NLLLDQAKRFYF-ENRS 191
                       +    V   + G +  S              + +    K+F   E R 
Sbjct: 172 YTTASEGKLKYEMEANKVNFAYAGALYSSIKDSEVKISDSDIVDYMKKNEKKFKADETRE 231

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQW------FEKYK-DNYRAPEYKRIS----YILFDVH 240
           + Y+++ ++          A +T        +      N   P ++  +    ++  +  
Sbjct: 232 IQYVLVEDKASKQDEADIKAKITALLSGSVVYNAKTGKNDTLPGFRNATNIAEFVNANSD 291

Query: 241 EKEKKIEISNDELQA----------------------EYEKNKE-KYFSPEIRTVEQLVF 277
                  +  + L A                       Y  +K   + +        ++ 
Sbjct: 292 VPYDSTYVPKNALPAVDADKLFSLPAGAIYGPYVYGKYYAISKSLGFKAGVNAKASHILI 351

Query: 278 -------PNQKEADE----------AFQSLKKGKK-FIQLA---EEQGKSLSDISLGSFS 316
                  PNQKE                 ++     F+ LA    +   +     LG F 
Sbjct: 352 GYEGSQTPNQKEKRTKEEAKAKAEEILAQVQSNPDSFMMLAFTSSDDSSAQQGGDLGYFG 411

Query: 317 KEYIPDVSLADSIF--SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
           +  +      D +F   + K G         FG+ +  +++ +    +        IA +
Sbjct: 412 QGQMVKP-FNDFVFNNGIGKVGLV----ETPFGFHVIKITDKQDGIRL------ATIAQK 460

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
           +  ++A+    +    L     +  +  + +   K + + +            ++   + 
Sbjct: 461 IEPSEAT---SDKVFTLATKFEMEAADKDFAATAKELGLKVE--GPVSAKAMDEQFGPLG 515

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
            +  ++   F K+          L +  ++  Q K    +    +      V+   K  K
Sbjct: 516 AQRNIVRWAFDKETDKGDVKRFELANIGHVIAQYKGENKSGLVSVTMARPYVEPILKNKK 575

Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE-NKFFGYDG--ISQ 551
            AE + +K           G +   + K+ G ++     +   +       G +   +  
Sbjct: 576 KAEILKAKMT---------GSSIEAVAKSAGVAVQQAADVTLENPVLPGGVGQEPQVVGT 626

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
            F+     +      N   YVV  +   K   +    ++++ +      D    ++  LK
Sbjct: 627 AFALAANKLSAPIEGNTGVYVVKNIKTVKAPALTNHAEYVAKVKAQSASDA-GRILPALK 685

Query: 612 SQYSVTVHD 620
           +   +  + 
Sbjct: 686 NNAKIEDNR 694


>gi|308061465|gb|ADO03353.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori Cuz20]
          Length = 299

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E    +++   ++ N       D +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDQTP-EFKAMMEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KKI+I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGNYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++++ K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|163938953|ref|YP_001643837.1| peptidylprolyl isomerase [Bacillus weihenstephanensis KBAB4]
 gi|163861150|gb|ABY42209.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           weihenstephanensis KBAB4]
          Length = 289

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 74/209 (35%), Gaps = 15/209 (7%)

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK-YKDNYRAPEYKRISYILFD 238
                   E   +    ++ + V    D     +   F+   K      E  +       
Sbjct: 51  QVLNNMVMEKVLIKNYKVDEKEVDKKFDEMKKQVGDQFDTLMKQQGLKEETVKNGVRASL 110

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
             E+  +  I++ +L+A++E  K      +      ++  +++ A +  + L +GK F +
Sbjct: 111 AQEQAIEKAITDKDLKAKFEDYK------QEIKASHILVKDEETAKKVKEELAQGKSFEE 164

Query: 299 LAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA++  +          LG F  + +      ++   L KK + +  +    GY I  V+
Sbjct: 165 LAKKYSEDPGSKEKGGDLGFFGPDKMVK-EFDEAARKL-KKDEVSEPVKTQHGYHIIKVT 222

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEK 383
                   +F + K DI  +    K  + 
Sbjct: 223 ETHADA--TFDKAKADIKKEAVQEKTQDA 249


>gi|297379400|gb|ADI34287.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori v225d]
          Length = 299

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E    +++   ++ N       D +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDQTP-EFKAMIEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KKI+I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++++ K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|119897994|ref|YP_933207.1| putative cell binding factor [Azoarcus sp. BH72]
 gi|119670407|emb|CAL94320.1| putative cell binding factor [Azoarcus sp. BH72]
          Length = 260

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 66/157 (42%), Gaps = 5/157 (3%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           + +  K   +++ EL+ EY+  K +    E +    ++  +++ A E    L  G KF  
Sbjct: 104 LQDYVKNNPVTDAELKKEYDSIKSRMGDKEYKP-RHVLVESEEHAKEIIGKLNGGAKFDD 162

Query: 299 LAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           LA+E    G       LG  + +       +D++  L K       +   +G+ +  + +
Sbjct: 163 LAKESRDPGSKDKGGDLGWTTPDRFVKP-FSDAMVKLEKGKYTAAPVKSDYGFHVIMLDD 221

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           ++      F+EVK  +  +++  K  + + +   + +
Sbjct: 222 VRELKAPPFEEVKPQLQQRLQQQKVEKHILDLRTKAK 258


>gi|94986747|ref|YP_594680.1| parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730996|emb|CAJ54359.1| Parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 308

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 109/356 (30%), Gaps = 85/356 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           + TV  V  + +    F    +    +  Q++     +++A+   L+K IL+ ++S   L
Sbjct: 24  NKTVAVVNGEIITL--FDLQAETAPEIFRQQLNPNNPADKAKVEQLEKAILEGMISNLIL 81

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E + +      V  E           ++ + + F  +L  + + E  + +     +
Sbjct: 82  TQEAERLHVNVGKDEVESEYHNF----IAKSQLTPEEFQYQLELQHLTEDSFKERIRSSI 137

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R+ ++G  VG                                      +   +  +++K
Sbjct: 138 LRSRLLGAMVG---------------------------------RKIVVTKKEIEDYYQK 164

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
             D  +                                        +     +  LV+P 
Sbjct: 165 NHDKLK----------------------------------------NNNQLQLAILVYPP 184

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
              A +    +K G   F ++ ++     K+     LGS   E +    L     S  K 
Sbjct: 185 DINAKDWAARIKSGSVSFEEVVKKVSVGPKAKEGGDLGSIDIEDLNPEWLEQ--LSTMKP 242

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G+ T +I  +       + NI      + + +   I   +R  K  E+ KE   +L
Sbjct: 243 GEVTSLIDINGLQGQLKLINIIKGEPQTLETLTPYIEEILREPKLEERFKEYTDQL 298


>gi|315637996|ref|ZP_07893181.1| major antigenic peptide PEB4 [Campylobacter upsaliensis JV21]
 gi|315481844|gb|EFU72463.1| major antigenic peptide PEB4 [Campylobacter upsaliensis JV21]
          Length = 273

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 73/162 (45%), Gaps = 11/162 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK---- 295
           ++  + I++   +++  YEKNKE++  P     + ++  +++EA      LK  K     
Sbjct: 104 NKIMQDIKVDAAKVKEAYEKNKEQFVKPARVKAKHILVTSEQEAKNIINELKGLKDKELE 163

Query: 296 --FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
             F ++A     + G + +   LG F +  +      D+ FSL K       +  +FGY 
Sbjct: 164 KKFTEIARTKSIDTGSAANGGDLGWFDESTMVKP-FTDATFSLKKGEITKTPVKTNFGYH 222

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           I    + +    V+F++ K  I N+++  +  +++    + L
Sbjct: 223 IILKQDSRAKEQVAFKDAKMGIENRLKFEEFQKRIALKGQEL 264


>gi|251788205|ref|YP_003002926.1| peptidyl-prolyl cis-trans isomerase SurA [Dickeya zeae Ech1591]
 gi|247536826|gb|ACT05447.1| Peptidylprolyl isomerase [Dickeya zeae Ech1591]
          Length = 430

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 63/411 (15%), Positives = 132/411 (32%), Gaps = 68/411 (16%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           + + +V    V   S INS  Q + + +Q+ G  +         L  +IL+ L+    + 
Sbjct: 26  NKIAAVVDNSVVLESDINSLLQSVKLNAQEAGQQLP----DDATLRHQILERLIMDNIIL 81

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q  + +G++    ++   IA         N+ S D   SRL  EG++   Y     K + 
Sbjct: 82  QMAQKMGVQVTDEQLDRSIANIAA----QNRMSIDQLRSRLTAEGVSFDTYRGQIRKDMI 137

Query: 161 RTDVVGM-FVGGMRPSNLLLDQAKR-FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
             DV        +      +D   +    +  +   + L+   +P   +P+   + +  E
Sbjct: 138 IADVRNSEVRRRVTVLPQEVDSLAQQLASQGANGPEVNLSQILLPLPENPTQDQVDK-AE 196

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEIS--------NDELQAEYEKN---------- 260
              +       +   +    +        +           EL   + +           
Sbjct: 197 SLANRLVKEASQGADFGKLAITYSADPQALKGGQMGWGRPQELPTLFAERLTNPQKGQIV 256

Query: 261 -------------------KEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLKK 292
                                +  S        ++            + + +E    +K 
Sbjct: 257 GPIRSGVGFHILRVNDTRGGAQAVSVTEVHARHILLTTSVVMNDAQARAKLEEVAGQIKS 316

Query: 293 GK-KFI----QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           GK  F     QL+++ G +     LG  S E + D +  D++  L KKG+ +  +H SFG
Sbjct: 317 GKLSFANAAKQLSQDPGTANQGGDLGWASPE-MYDPAFRDALTQL-KKGEISTPVHSSFG 374

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
           + +  + + +                  R+    +  +E    ++E  A  
Sbjct: 375 WHLIQLLDTREVDKTD----AAQKERAYRMLFNRKFAEEAQTWMQEKRAAA 421


>gi|222839387|gb|EEE77724.1| predicted protein [Populus trichocarpa]
          Length = 235

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 6/155 (3%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E YK          +   LF   + +KK  +++ E +AEY+K        E +    ++ 
Sbjct: 59  EAYKQQLELARQTILIRALF--EDFQKKNPVTDAEAKAEYDKAVAANSGKEYK-ASHILV 115

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAK 334
            ++  A      +K GKKF  +A+++ K     + G       P       ++++  L K
Sbjct: 116 ESEDRAKAIIAEIKAGKKFEDIAKKESKDPGSGARGGDLDWANPGNYVPEFSEALIKLEK 175

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
            G     +   FGY I  + + + +    F+EVK 
Sbjct: 176 GGMTQEPVKTQFGYHIIRLDDARQAELPKFEEVKP 210


>gi|111114930|ref|YP_709548.1| basic membrane protein [Borrelia afzelii PKo]
 gi|216263862|ref|ZP_03435856.1| basic membrane protein [Borrelia afzelii ACA-1]
 gi|110890204|gb|ABH01372.1| basic membrane protein [Borrelia afzelii PKo]
 gi|215979906|gb|EEC20728.1| basic membrane protein [Borrelia afzelii ACA-1]
          Length = 336

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/408 (13%), Positives = 132/408 (32%), Gaps = 84/408 (20%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70
            K FL ++ +  +       + S + ++ V  +     + +  +SF +     + +  + 
Sbjct: 1   MKSFLFLVILGTVG------INSFAQNTPVAIINLYKNEIITKTSFDSK----VDIFKKT 50

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
            G  + +         K++L  L++     Q     G++     V   I     F   + 
Sbjct: 51  QGRDLTAAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN- 101

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
            F+ +     + ++G N  E +    + LS   +V                      + R
Sbjct: 102 -FTDEQIKQMIEKQGTNWGELLSSMKRSLSSQKLVLK------------------QAQPR 142

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
                         +  PS   + +++E  K  +  P+  R+S++ F   +K++   +  
Sbjct: 143 -----------FSEVKTPSEKEIIEYYEANKTRFVNPDISRVSHVFFSTKDKKRSDVLDQ 191

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
                   KN            +++ F      +EA +     +     ++ +   L  +
Sbjct: 192 A-------KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFL 229

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366
           S    + + +        +F+   KGD +  I    G+ I  V+       +   +    
Sbjct: 230 SRDDQNAQNLLGPDFIKEVFNF-NKGDISSPIASKEGFHIVKVTEKYAQRFLGLNDKVSP 288

Query: 367 -----VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                VK  I N M   +  + V +  + +   L    S+  +    K
Sbjct: 289 ATDLIVKDAIRNNMVNIQQQQIVVQVQQDVYGKLNKSASIQILDSSLK 336


>gi|311696171|gb|ADP99044.1| survival protein surA [marine bacterium HP15]
          Length = 446

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/426 (13%), Positives = 124/426 (29%), Gaps = 65/426 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  +            +  + G  +   +     L++++LD L++ +  
Sbjct: 32  DQVVAIVDEDVILQTELEARINTITSRLGAQ-GTALPPRQV----LEERVLDQLITESIQ 86

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G+      +   +A       + N  S   F ++L  EG+   +  +   K +
Sbjct: 87  MQMADRAGMRISDNELNETMANI----AERNGMSLPQFENQLEAEGVTYNQAREQIRKEM 142

Query: 160 SRTDVVG-MFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             + V        +R ++  ++      +A+        + YI ++       A+   A 
Sbjct: 143 LTSRVQQRQVGNRVRVTDREVENYLESLEARGGNNAQYRLAYIFVSVDDPSDEAEVDAAR 202

Query: 213 LTQWFE----KYKDNYRAPEYKRISYI------------------LFDVHEKEKKIEISN 250
                         ++R                            L      E  +   +
Sbjct: 203 EKAERLRSEIANGRDFREVAVAESDASNALEGGDMGWRAEGQLPSLVAPVVPELPVGEPS 262

Query: 251 DELQAEYEKN---------KEKYFSPEIRTVEQLVF-----PNQKEADEA----FQSLKK 292
           D L+     +          E+    +   V  ++          +A+      +Q L+ 
Sbjct: 263 DVLENNSGFHLVMVMDKRGGEQQQMIQQHRVRHILVRPSEATTDSQAETVIRDLYQQLQN 322

Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  LA E            +LG  S   +   +   ++   A  G+        FG+
Sbjct: 323 GASFSALAREYSDDPVSGSDGGNLGWVSPGQMV-PAFEQAMLD-ADIGELRGPFRSQFGW 380

Query: 349 VIAHVSNIKP---SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
            I  V   +    S  V   E ++ I  +   T+    ++E             + DE +
Sbjct: 381 HILQVQERRQKDISGDVRDAEARQAIYRRKFETELQNWLQEIRDEAFVEFKGEYAKDEPA 440

Query: 406 RREKIV 411
             E + 
Sbjct: 441 EEEPVS 446


>gi|51598371|ref|YP_072559.1| basic membrane protein [Borrelia garinii PBi]
 gi|51572942|gb|AAU06967.1| basic membrane protein [Borrelia garinii PBi]
          Length = 336

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 122/374 (32%), Gaps = 84/374 (22%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70
            K FL ++ +   I G++    S + ++ V  +     + +  + F +     + +  + 
Sbjct: 1   MKSFLFLVILG--IMGIN----SFAQNTPVAIINLYKNEIITKTGFDSK----VDIFKKT 50

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
            G  + +         K++L  L++     Q     G++     V   I     F   + 
Sbjct: 51  QGRDLTAAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN- 101

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
             + +     + ++G N  E +    + LS   +V                         
Sbjct: 102 -LTDEQIKQMIEKQGTNWGELLASMKRSLSSQKLV------------------------- 135

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
               +  +      +  PS   + +++E  K  +  P+  R+S++ F   +K++   +  
Sbjct: 136 ----LKQSQPRFSEVKTPSEKEIVEYYEANKTKFVNPDISRVSHVFFSTKDKKRSDVLDQ 191

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
                   KN            +++ F      +EA +     +     ++ +   L  +
Sbjct: 192 A-------KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFL 229

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366
           S G  + + +        +F+   KGD +  I    G+ I  V+       +   +    
Sbjct: 230 SRGDQNAQNLLGADFIKEVFNF-NKGDISSPIASKEGFHIIKVTEKYAQRFLGLNDKVSP 288

Query: 367 -----VKKDIANQM 375
                VK  I N M
Sbjct: 289 TTDLIVKDAIRNNM 302


>gi|114319362|ref|YP_741045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122070615|sp|Q0AC82|SURA_ALHEH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|114225756|gb|ABI55555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 433

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/407 (11%), Positives = 118/407 (28%), Gaps = 62/407 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  Q V  S            +  + G  +           +++L+ L++    
Sbjct: 32  DRIVAVVDDQVVLASELERELATIANQLRSR-GQRLPPRDV----FQRQVLERLITQRVQ 86

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               + +G+  D   +   + R      + N  +   F   + +EG     + +   + +
Sbjct: 87  LSRAQRVGITVDDATLDAAMQRM----ARQNNMTLGQFRQAVEQEGFEYNYFREGIREEI 142

Query: 160 SRTDV-VGMFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
           + + +        +  +   +++  +    EN+      +      A +        +  
Sbjct: 143 AISRLRQAQVEEQVTVTPQEVEEVLETLDDENQEYRLGHILVATPEAASTAQLEEARERI 202

Query: 218 EKYKDNYRAPEYK------------------RISYILFDVHEKEKKIEISND-------- 251
           E+ ++   A E                     + + L           I           
Sbjct: 203 EQLREQIIAGETDFEGAATAFSDAASAMEGGDLGWRLHSQLPSLFAEAIDEGLQAGEVSG 262

Query: 252 --------ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS----------LKKG 293
                    L    ++  +            ++     +      +          ++ G
Sbjct: 263 VLQNSSGFHLVKLMDQRTQGGERVTETRARHILIRTDGDVITDEDARLRLRSLLERIEAG 322

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F +LAE    + G +     LG      +       ++ +L ++G  +      FG+ 
Sbjct: 323 ESFAELAEAYSEDPGSAARGGDLGWTQPGQLV-PEFQGAMDAL-EEGQISAPFASPFGWH 380

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           I  V++ +     S + ++  +A Q+   K  E  ++  +RL +   
Sbjct: 381 IVQVTDRRERDV-SRERLRDQLAQQIHQRKVEEAFEQWIRRLRDEAY 426


>gi|332531190|ref|ZP_08407103.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
           ATCC 19624]
 gi|332039297|gb|EGI75710.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
           ATCC 19624]
          Length = 447

 Score = 90.8 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/468 (12%), Positives = 135/468 (28%), Gaps = 95/468 (20%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +  +       + L  ++ +              L +++LD L++     Q 
Sbjct: 42  VAVVNSEPITNAQVNAEVARALRQLAAQRRPA-----PEGQALRRQVLDQLINERAQLQL 96

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSR 161
             ++GL+ D   V            + N+ +      ++ ++ G+  +       + L  
Sbjct: 97  AREMGLKIDEPSVDQAEQNV----ARQNQLTVTQLREQVQQQDGMTTQALRARLKEQLLL 152

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           T +                         R VD          A    S+A + Q+  + +
Sbjct: 153 TRLRE-----------------------REVD----------ARVKVSDADVEQYLSEQQ 179

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
                P  + I      V                  E     +     R  EQ+      
Sbjct: 180 QRNSNPASQLIHIAHILVAVP---------------EDASATFQLESQRKAEQI------ 218

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFT 339
               A ++ +KG  F  LA E   +    + G               +++ +LA  G+ +
Sbjct: 219 ----ARRAREKGADFAALARELSDAADRANGGQLGLRAGDRYPALFTNAVRTLA-VGEIS 273

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA-------NQMRITKASEKVKEDYKRLE 392
             +    G+ +  +   +          +            Q+   +A +K+ +  +R++
Sbjct: 274 EPVRSGAGFHVLKLIERRQPAPAPQTVTQSRARHILLIPSAQLSEAQARDKLNDFRRRIQ 333

Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
                  ++   + ++   +         G          +P  E ++ ++     P   
Sbjct: 334 SGDTDFATLARQNSQDGSAA-------QGGDLGWASPGMFVPEFENVMNQL----APGQI 382

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEE 498
              +     S   V + + +  R   L   E    V+   +  K AE 
Sbjct: 383 SEPLI----SRFGVHLIQLLERRQATLNEREQRELVRNMLRERKMAEA 426


>gi|307636864|gb|ADN79314.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           908]
 gi|325995453|gb|ADZ50858.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           2018]
 gi|325997051|gb|ADZ49259.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           2017]
          Length = 299

 Score = 90.8 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E    +++   ++ N       + +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLNQTP-EFKAMMEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KKI+I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGNYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++++ K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|332878100|ref|ZP_08445830.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332684062|gb|EGJ56929.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 479

 Score = 90.8 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 68/199 (34%), Gaps = 31/199 (15%)

Query: 210 NAVLTQWFE---KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
            A L   ++    +K  +R        Y    +      +     EL+  Y+  K     
Sbjct: 76  EAALDARYDTLSSFKKEFRT-------YRDQQIRPYFVSVSAEEKELKRYYDGMKASIGP 128

Query: 267 PEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAE----EQGKSLSDI 310
             +     ++    ++A            D  + +L++G  F  LA+    ++G +    
Sbjct: 129 DGLIHPAHIMILVAQKATPEEQAKAKERIDSIYTALQQGADFATLAKQCSADKGSAARGG 188

Query: 311 SL-GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
            L G F+K         D  FSL  KG+ +       GY I  + + K     S++E+K 
Sbjct: 189 DLGGWFAKGQTMK-EFEDVAFSL-NKGEMSKPFQSPMGYHIVLMKDRK--QLESYEELKP 244

Query: 370 DIANQMRITKASEKVKEDY 388
            +   +      E+V    
Sbjct: 245 QLQRFLESRGLKERVASMA 263


>gi|237809111|ref|YP_002893551.1| SurA domain-containing protein [Tolumonas auensis DSM 9187]
 gi|237501372|gb|ACQ93965.1| SurA domain protein [Tolumonas auensis DSM 9187]
          Length = 436

 Score = 90.8 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 61/390 (15%), Positives = 125/390 (32%), Gaps = 80/390 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            + +  V +  V  S       +     +++   +    +     L K+ILD L+  + +
Sbjct: 31  DNVIAIVNKDVVVQSELDRLMHKVQADAAEQRQTLPPYHQ-----LHKQILDRLIEDSLI 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  GL     ++   +A        + + S     ++  REG+   E+ +   K +
Sbjct: 86  LQLAERQGLRIGDSQLDQALASIAA----EKRLSVADMQAKAEREGLTPAEFRETVRKEM 141

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                             ++ + +R     R                + ++  + Q  ++
Sbjct: 142 ------------------MISEMRRNQLRQR---------------INITDQEVKQLAKQ 168

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
             +     +   I +IL  +     +                      + R  E      
Sbjct: 169 ISEQGNKGQRFHIEHILLSLSSDADR--------------------GEQQRVAE------ 202

Query: 280 QKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             +A +  Q LKKG  F Q+A       K+L     G  + E +P  SL     S A K 
Sbjct: 203 --KARQLLQQLKKGADFHQMAVAESADSKALDGGDWGWMTIEEMP--SLMAEAISGAHKD 258

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRITKASEKVKEDYKRL 391
            F   +    G  I HV +++    +  QEV         +  +   KA + +K   + +
Sbjct: 259 QFIGPLRSGAGLHIIHVKDMQGQQAIEMQEVNARHILLKTSVILSDEKAEQMLKGYLRDI 318

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFA 421
           +   A    + E    +   ++    + +A
Sbjct: 319 QSGKASFAKLAEKYSDDTGSALKGGELGWA 348


>gi|299140828|ref|ZP_07033966.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris C735]
 gi|298577794|gb|EFI49662.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris C735]
          Length = 713

 Score = 90.4 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 90/725 (12%), Positives = 197/725 (27%), Gaps = 133/725 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56
           L  IR  S+       + +    F+     +A  S   +       V  V  +K+  + F
Sbjct: 4   LGKIR--SKGAFLMGIIGLGLFAFI---AEEAFRSCESTRNNARQQVGEVLGEKINVNEF 58

Query: 57  INSWKQELGMI-SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
                +   +I  Q+    +N E+     +   + +  V    ++   + +GL      +
Sbjct: 59  QKLVDEYTEVIKMQQGAEALNDEQLNQ--VKDMVWNTFVQTKIVEHEAKQLGLRVTDAEL 116

Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLA-------REGINEKEYI-------- 152
                      + ++P  + +  +F  +     LA             ++Y         
Sbjct: 117 QNVLKAGTNPMLLQTPFVNQQTGRFDANALQKFLAEYDTQRSANPQMAQQYETIYKYWTF 176

Query: 153 --DHYTKMLSRTDVVGMFVGGMRPSNLLLD------------QAKRFYFENRSVDYIVLN 198
                 + L       +    +  + +               Q   F + +   D + + 
Sbjct: 177 IEKTLRQQLLAQKYQSLLAHCLLSNPVEAKMAFKEENNESNIQLAAFPYSSIQDDKVQIT 236

Query: 199 NRHVPAI-----------------------ADPSNAV---LTQWFEKYKDNYRAPE---- 228
              + A                          PS A    L + F  Y  +  + E    
Sbjct: 237 ESDLKAKYDELKPRFQQYVESRDIKYVDFQVTPSAADKNALQKEFAGYAKDLASAEDPSA 296

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNK----------------------EKYFS 266
             R S  L +             ++ A+ +                          K   
Sbjct: 297 VVRKSSSLVNYLGIPVGKTAFPSDIAAKLDSMAVGHTSGIIENTMDNTLNVIRLIAKQQL 356

Query: 267 PEIRTVEQLVFP------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
           P+     Q+           K AD  + +LK G  F  +A++ G++         + +  
Sbjct: 357 PDSIEYRQIQVGGASADVAHKSADSIYAALKAGADFEAVAKKYGQT---GQKAWMTTQQY 413

Query: 321 PDVSLAD-------SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
            +    D       +  ++    +   ++    G +I  V + K         V   I  
Sbjct: 414 QNAPSMDNDTKNYITSLNMMAVNETKNIVL-PQGNIIVQVLSRKAMTDKYIAAV---IKK 469

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
            +    ++E   + Y +   F++   + D+I +        +   +          +A I
Sbjct: 470 NIVF--SNETYSKAYNKFSSFVSANQTGDDIIKNAAKSGYRVQEANDI--TTAQHYLANI 525

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWK 491
                 L  +F               +   +   + +  P   R L+  +V   VK +  
Sbjct: 526 HGTRDALKWLFEAKQGAVSQMYTCGDNDHLLVAVLTKIHPVGYRSLDDSQVKEMVKAEVM 585

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
             K AE + SK N  V   +        +      +      +                 
Sbjct: 586 KDKKAEMLMSKLNG-VSTLAAAKAKGAKVADVNQVTFAAPVFVTLTGASEPALS----GA 640

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
           V++          ++      +F+VTN  + P +  DK +    +        + +  L 
Sbjct: 641 VYATAKGKFSTKAVKGNAGVYMFQVTNKTMRPGKFDDKTMEQKLRQKTMQYAGNFMNELY 700

Query: 612 SQYSV 616
               V
Sbjct: 701 INAKV 705


>gi|218777908|ref|YP_002429226.1| SurA domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759292|gb|ACL01758.1| SurA domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 330

 Score = 90.4 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 103/357 (28%), Gaps = 71/357 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S         L  I    G              + IL+ +VS   +
Sbjct: 34  DRIVAIVNTDVIMLSELNEKMAPILAKIDA-AGLPDEQREKTIYKYREDILNTMVSSLLV 92

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +Q  E +G++   G V   + R   F    +     +  ++L  +GI+   + +     +
Sbjct: 93  EQESEKLGVKVMEGEVDSYLER---FKQSSHLTDEAL-RAQLEADGISMDLFRNQIHDTI 148

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
               +                                     V +    ++  +  ++ +
Sbjct: 149 LFQKL---------------------------------KTTEVDSKIVITDKEVQDYYNE 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           + D Y   +   + YIL                    Y +N     + E +         
Sbjct: 176 HIDQYEGKKSYHLRYILLP------------------YPEN----ATEEQKAA------V 207

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +K   E     K G+ F  L E         S   LG F    +           + K G
Sbjct: 208 EKTMGEIIAMFKAGESFPALIENVSNEKIGGSGGDLGFFKAGDLTKDLSEKV--KIMKPG 265

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           D T  +    G  I  +   +     S ++V+++I + +   +   K ++    LE+
Sbjct: 266 DITEPMTVDLGLQIFWLEETEMGEGASLEDVRQEIQDLLYNEEVKHKYEKWVSELED 322


>gi|108562596|ref|YP_626912.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori HPAG1]
 gi|107836369|gb|ABF84238.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori HPAG1]
          Length = 299

 Score = 90.4 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E    +++   ++ N       D +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KK++I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++++ K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|226309756|ref|YP_002769650.1| hypothetical protein BBR47_01690 [Brevibacillus brevis NBRC 100599]
 gi|226092704|dbj|BAH41146.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 300

 Score = 90.4 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 27/268 (10%)

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV--GMFVGGMRPSNLLL 179
            P     D   S+D +V+ L +      ++       +   +VV       G+      L
Sbjct: 33  QPAAIVGDKTISNDEYVTALKQ------KFGKQVLNDMINREVVFQEAKRSGITVDPKQL 86

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           +Q      ++            +   A  +   L Q                ISY +   
Sbjct: 87  EQELSQIRDSYGSRTDSEFEAALIKQAGTTVEALKQ---------------EISYQILLQ 131

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               K + I ++EL   Y    ++Y  P    + Q+V  +QKEA++    LK G  F  +
Sbjct: 132 TLATKDMTIKDEELINVYNSRSDRYTRPMQVRLGQIVVASQKEAEQVLADLKNGADFQTI 191

Query: 300 AEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A+ +            +G  S +       A  I    +K  ++  I     YVI  +  
Sbjct: 192 AKARSIDADTAVNGGDVGWVSIKDNRLPDEAKPIVEKLEKDKYSEAIKIQDQYVIYQLRE 251

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEK 383
            + +   +F+EVK ++  +M   +    
Sbjct: 252 RREASQRTFEEVKDELRREMAFAQVESL 279


>gi|317012021|gb|ADU82629.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori
           Lithuania75]
          Length = 299

 Score = 90.4 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E    +++   ++ N       D +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KK++I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++++ K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|116750899|ref|YP_847586.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699963|gb|ABK19151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 326

 Score = 90.4 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 57/381 (14%), Positives = 120/381 (31%), Gaps = 78/381 (20%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           VL V F +   S    + S    V  V  + + +S      ++ L ++ + +     ++ 
Sbjct: 7   VLLVLFCVIAASGRCAADSLDRIVAVVNGEIILYSEL----QERLQLVQKSLPETRTNDP 62

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           AR   +++++L  +      +Q  + + +      V   I     F   D+  S     +
Sbjct: 63  ARKAAIERELLQQMTREKLTEQEAKRLKITVTKKDVDEAI----AFVMADHNVSQAQMEA 118

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
           RL   G + +E+    TK L R  ++   +              +     + +D   L+ 
Sbjct: 119 RLKESGQSMEEFRKVLTKDLERDRLLERVLKS------------KILISEKQID-AFLSQ 165

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
                  +P                R  E  R+  I     +  +  +            
Sbjct: 166 SPPEVRVEP----------------RGKEEYRLGIIFLPASDGAEGKQ------------ 197

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFS 316
                               +K A E  + LK G+ F  +A +  K   +     +G  S
Sbjct: 198 -------------------AEKRAREIREKLKAGEDFAAMARQYSKGPAAQDGGDVGFVS 238

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI-----KPSFTVSFQEVKKDI 371
            + +             K    + V+ G  GY I  V+++     + +       +++  
Sbjct: 239 LDEL--APFIAKNVKDLKINQPSDVVKGGDGYYIFLVTDVRRAEMQAAQNSPATNMRERA 296

Query: 372 ANQMRITKASEKVKEDYKRLE 392
             Q+   + + +  E  K LE
Sbjct: 297 RRQLYQQEMARRFDEWIKDLE 317


>gi|317013595|gb|ADU81031.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           Gambia94/24]
          Length = 299

 Score = 90.4 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E    +++   ++ N       + +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLNQTP-EFKAMMEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KK++I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGNYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++++ K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|237751766|ref|ZP_04582246.1| peptidyl-prolyl cis-trans isomerase [Helicobacter bilis ATCC 43879]
 gi|229373132|gb|EEO23523.1| peptidyl-prolyl cis-trans isomerase [Helicobacter bilis ATCC 43879]
          Length = 280

 Score = 90.4 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 68/186 (36%), Gaps = 18/186 (9%)

Query: 225 RAPEYKRISYILFD-------VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           ++ EY+  +  +         V    K I +S  + +  Y+ N + + + +   V  ++ 
Sbjct: 88  KSEEYRMANLQMLSGLWLKKQVDSLSKTINVSVADAKKFYDANPKAFVT-QNAEVRHILV 146

Query: 278 PNQKEADEAFQSLKK------GKKFIQLAEEQGKSLSDISLGSFSK----EYIPDVSLAD 327
             +++A      + K        KF +LA++          G   K            A 
Sbjct: 147 QKEQDAKNIIAEINKVPKAKTESKFEELAKKLSIDPGSKDNGGLMKLPINSPAIAPEFAQ 206

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
            +  ++        +   +GY I ++  +    T +F  VK  +   ++  K  E +KE 
Sbjct: 207 EVLKMSAGTYTKNPVKTRYGYHIIYLKKLDKPATQTFDSVKGQLVELLKQQKMEEVLKEK 266

Query: 388 YKRLEE 393
            K++ +
Sbjct: 267 VKKMRD 272


>gi|322379060|ref|ZP_08053463.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter suis
           HS1]
 gi|321148552|gb|EFX43049.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter suis
           HS1]
          Length = 267

 Score = 90.4 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 68/159 (42%), Gaps = 14/159 (8%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------GKKFIQ 298
           K +I  D+L+  Y+ NK ++   E +    ++   + +A      L K       K+FI 
Sbjct: 100 KEDIPEDQLRKYYQDNKTQFVQQEAK-ARHILVKTEADAKRVISELNKTPKTRIEKEFID 158

Query: 299 LAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           +A  +    +         LG F K  +     ++++F+L         +   FGY + +
Sbjct: 159 IANRESIDPNTKNSKNGGDLGKFQKNQMA-PEFSNAVFALKPGSYTKTPVKTEFGYHVIY 217

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +     T +F++ ++ I   ++  +  E VK + ++L
Sbjct: 218 LMSKNEPKTPTFEQARQTIIGILKEHQFQEYVKGELEKL 256


>gi|134296902|ref|YP_001120637.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
 gi|134140059|gb|ABO55802.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
          Length = 452

 Score = 90.4 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 53/425 (12%), Positives = 127/425 (29%), Gaps = 68/425 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +E+     L  ++L+ +V     
Sbjct: 40  DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPAEQ-----LRAQVLNQMVLERIQ 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D   V   + R      + N  + D + +RL  +G+    +       L
Sbjct: 95  VQKAKDDGIRIDDATVQSTLQRL----AQANGMTLDQYRARLEAQGVPWSVFTSDARTEL 150

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDYIVL--------NNRHVPAI 205
             + +    V G +  S+  +             + + + +  +            + A 
Sbjct: 151 MLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQADIEAA 210

Query: 206 ADPSNAVLTQWF-------------EKYKDN------YRAPEY-----KRISYILFDVHE 241
              + A+L Q               E           ++AP          +  L     
Sbjct: 211 QKKAEALLQQATSGADFEKLARNNSEANDAKKGGDLGFKAPSTLPPDVVAAASKLRPGQV 270

Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286
               I + +  E+    ++ + +  S          V  ++            +++  + 
Sbjct: 271 NPTLIRVPDGFEIIRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSENQARQQLLDI 330

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 331 RKQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPVR 388

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             +GY +  V + + +   S Q+        +   KA +   +  + L +   +   +D 
Sbjct: 389 TEYGYHLIQVIDRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQYKIDG 447

Query: 404 ISRRE 408
           +    
Sbjct: 448 VGPAN 452


>gi|134295947|ref|YP_001119682.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
 gi|134139104|gb|ABO54847.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
          Length = 260

 Score = 90.4 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               KK + ++ E++A Y+   +         +  ++  N+++A +    +K G KF  L
Sbjct: 103 ENFLKKNQPTDAEVKARYDDLVKGAGGNREYHLHHILVDNEQQAKDLIAKIKAGAKFEDL 162

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    +S         A +   L K       +   FG+ I  V ++
Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDQPVKTQFGWHIIRVDDV 222

Query: 357 KPSFTVSFQEVK 368
           +      F +VK
Sbjct: 223 RDVAPPPFDQVK 234


>gi|302872296|ref|YP_003840932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575155|gb|ADL42946.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 331

 Score = 90.4 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 110/364 (30%), Gaps = 88/364 (24%)

Query: 42  TVVSVGRQKVPFSSFINSWKQ------ELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
            V+ V  ++V    +   +        +    +  +  V N +  R + L  ++   L  
Sbjct: 28  VVLEVNGEQVTKREYKIRFNTLKENAIQFSSRADILDQVFNGKTYREL-LKDELFTILTE 86

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
                Q      +                     N+     F   L + G +E  +    
Sbjct: 87  ELLCLQDARRRNIYLTKQEEEEIKKYIEELKA--NEEMRSYFNQYLRKIGSDENHFY--- 141

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            + L +T ++      +                               +    S++ +  
Sbjct: 142 -RDLHKTRIINKLYSSIT------------------------------SKTTVSDSEIVN 170

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++   K+ ++     +I  +   +  + ++ ++   E+                      
Sbjct: 171 YYNTNKNQFK-----KIKIMDIFLKVENEEEDVQKREI---------------------- 203

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-DISLGSF------SKEYIPDVSLADS 328
                  A++    LKKG+ F +L ++  +  S  I+ G         KE        + 
Sbjct: 204 -------ANKIVSELKKGEDFEKLVKKYTEDESVGITKGIIDYFRKGEKEAEYGSVFEEE 256

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           +F LA  G  + +I    GY I  V + K    +   EVK +I +++   K  +  +   
Sbjct: 257 VFKLA-VGQVSNIIKTIKGYHIVKVLDEK---YMPLDEVKGEIQSKLMKQKKDQVFRLYI 312

Query: 389 KRLE 392
           + L+
Sbjct: 313 ENLK 316


>gi|323143364|ref|ZP_08078052.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066]
 gi|322416882|gb|EFY07528.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066]
          Length = 457

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 53/382 (13%), Positives = 127/382 (33%), Gaps = 68/382 (17%)

Query: 29  GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88
           G++    + +  +T   V    +  S    + ++E+       G  V+      V   K 
Sbjct: 27  GIAFNANAQTLDTTAAVVNNDIILTSELD-AMQKEMAANFASRGQQVSP-----VNARKA 80

Query: 89  ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
            L+ L++ + + Q     GL  +  ++   + +   F  ++      +        G++E
Sbjct: 81  ALEQLITKSLILQQARTHGLNLNDMQLDQALEQ---FAARNGVSVKTLLDQM--GPGLSE 135

Query: 149 KEYIDHYTKMLSRTDVV-GMFVGGMRPSNLLLDQAKRFYFENRSVD------YIVLNNRH 201
               + + + L   +V        ++ S+  +    +   +  SV+       +++    
Sbjct: 136 AAQRERFREDLIIGEVRRNQVRNRIKISDSEVKLLAKNLKQLGSVEPSYHLSQLIVPLAA 195

Query: 202 VPAIADPSNA------------------VLTQWFEKYK------DNYRAPEYKRISYILF 237
               A    A                   L   + +        D    PE +     L 
Sbjct: 196 NATSAQVQRAVNTVDKIKADLRKGADFNDLAALYTQGSLAAQGGDLGYIPESRVPVPFLP 255

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKY--------FSPEIRTVEQLVF------PNQKEA 283
            + + +    I    +++ Y  +  KY         +  +     ++       P++   
Sbjct: 256 SLLKSKPGAVIGP--IRSPYGLHLIKYVGVTDGAVKTITMYDASHILLTTSIVYPDETAV 313

Query: 284 DEA----FQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            E      + LK    F   A+    + G +++   LG  + +   D + A ++  L K 
Sbjct: 314 KELNLLRDEILKGAISFSDAAKNFSEDPGSAINGGDLGYATPDR-YDPAFAAAMVRL-KP 371

Query: 336 GDFTPVIHGSFGYVIAHVSNIK 357
           G+ +  +  SFGY +  +++IK
Sbjct: 372 GEISEPVRSSFGYHLIKLNDIK 393


>gi|229918171|ref|YP_002886817.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium sp.
           AT1b]
 gi|229469600|gb|ACQ71372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium sp.
           AT1b]
          Length = 333

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 75/198 (37%), Gaps = 13/198 (6%)

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           +     K K ++++++E++A++ K               ++   ++EA +  + L  G  
Sbjct: 140 MLVDAAKSKLVDVTDEEIEAQFAKENV------EVEASHILVETEEEAQDIIKELNDGAD 193

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F +LA+E+            LG FS   +      +  F     G  +  +   FG+ + 
Sbjct: 194 FAELAKEKSTDTGSGEKGGELGFFSAGAMV-PEFEEYAFKEDVVGKISEPVQSQFGFHVI 252

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITK-ASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
            V++ K       ++ K  I  ++   K AS    + Y  L E   +     +  ++   
Sbjct: 253 KVTDRKEKDLK-LEDEKDRIREELAAEKSASVDANKIYAELIEKYNVDVKDAKAEQQFDA 311

Query: 411 VSIDLPLVDFAGKDVKGK 428
           V   +   D + ++   +
Sbjct: 312 VKEAIKNADESSEEPAAE 329


>gi|160898739|ref|YP_001564321.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
 gi|160364323|gb|ABX35936.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
          Length = 261

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 6/156 (3%)

Query: 219 KYKDNYRAPEYKRISYILFDV--HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
              + Y+         IL      + +KK  +++ E +AEY+K        E +    ++
Sbjct: 82  ANSEAYKQQMELARQTILIRALFEDFQKKNPVTDAEAKAEYDKAVAANSGKEYK-ASHIL 140

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLA 333
             ++  A      +K GKKF  +A+++ K     + G       P       ++++  L 
Sbjct: 141 VESEDRAKAIIAEIKAGKKFEDIAKKESKDPGSGARGGDLDWANPGNYVPEFSEALIKLE 200

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
           K G     +   FGY I  + + + +    F+EVK 
Sbjct: 201 KGGMTQEPVKTQFGYHIIRLDDARQAELPKFEEVKP 236


>gi|315586175|gb|ADU40556.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 35A]
          Length = 299

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E    +++   ++ N       D +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDQTP-EFKAMMEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KKI+I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++ + K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQKIEEL 289


>gi|308183972|ref|YP_003928105.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           SJM180]
 gi|308059892|gb|ADO01788.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           SJM180]
          Length = 299

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E    +++   ++ N       + +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLNQTP-EFKAMMEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KK++I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++++ K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|261839036|gb|ACX98801.1| Protein maturation protease (Peptidylprolyl isomerase)
           [Helicobacter pylori 52]
 gi|317181484|dbj|BAJ59268.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           F57]
          Length = 299

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 20/212 (9%)

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +   ++ N       D +        E  K          + +      E+ KKI+I   
Sbjct: 86  IRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QALVEFWAKKQAEEVKKIQIPEK 138

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLAEEQGK 305
           E+Q  Y  NK++ F  +      ++   + EA      +      KK  KFI+LA     
Sbjct: 139 EMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELANRDTI 198

Query: 306 SLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
             +         LG F K  +     + + F+L         +   FGY I ++ +    
Sbjct: 199 DPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISKDSP 257

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            T ++ + K  I   ++     E++ +  + L
Sbjct: 258 VTYTYDQAKPTIKGMLQEKLFQERMNQKIEEL 289


>gi|299536706|ref|ZP_07050016.1| hypothetical protein BFZC1_11817 [Lysinibacillus fusiformis ZC1]
 gi|298727820|gb|EFI68385.1| hypothetical protein BFZC1_11817 [Lysinibacillus fusiformis ZC1]
          Length = 323

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 49/382 (12%), Positives = 115/382 (30%), Gaps = 117/382 (30%)

Query: 6   RKASRTWVAKIFLVVL--FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
           R  ++  +A I +++L   + F+ W + +    +     V ++    +    ++ + ++ 
Sbjct: 24  RLKTKPALAVIAVLLLGNVLWFISWLIPNKGQEIGSDEQVAAIDGDVITRQEWMIAMEER 83

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
            G                     K+ L NLV+   +++  +   ++     +  E+A   
Sbjct: 84  YG---------------------KETLQNLVNETVMEKAAKTYKIKVTDKEIDLELALM- 121

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
                 +KF         A + ++ ++        L    V+                  
Sbjct: 122 --RSAQDKFDT-------AMQNLSAEQLRQKIRSQLILDKVL------------------ 154

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
                                        + +++E+ +  Y      R ++         
Sbjct: 155 -------------------TKDVVIEEENVEKYYEENQGLYNTKTSYRTNF--------- 186

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
                                          +   ++K ADEA   LK G  F  LA E 
Sbjct: 187 -------------------------------IEVDSKKAADEALGELKNGSDFTVLAREI 215

Query: 304 GKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIK 357
               +  SLG         +   D ++ +++ SL K  + +       G Y I  V  + 
Sbjct: 216 SVDSASASLGGDIGFLTENQENVDPAIINTVKSL-KANEVSKAFKLDNGHYGIVQVQEVL 274

Query: 358 PSFTVSFQEVKKDIANQMRITK 379
              + ++ +VK+ I  ++ + +
Sbjct: 275 EGQSFTYDDVKEHIERELALEQ 296


>gi|238752276|ref|ZP_04613756.1| Chaperone surA [Yersinia rohdei ATCC 43380]
 gi|238709544|gb|EEQ01782.1| Chaperone surA [Yersinia rohdei ATCC 43380]
          Length = 434

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 59/404 (14%), Positives = 128/404 (31%), Gaps = 66/404 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S      +  + + +Q+ G  V         L  ++L+ L+    L
Sbjct: 26  DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQQVP----DDGTLRHQVLERLIMDNIL 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+      +   IA         N+ +     SRLA +G+N   Y +   K +
Sbjct: 81  LQMAKKMGITVSDEALDKAIADIAA----QNRMTPAQMRSRLAADGLNYDTYREQIRKEM 136

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217
             ++V        +      ++   +      S D  + L++  +P   +PS   + Q  
Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 195

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPEI 269
           E+      +       +    +        +           EL + + +  +     +I
Sbjct: 196 EELAKKLASDIKAGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSAKKGDI 255

Query: 270 R-----------------------------TVEQLVFP---------NQKEADEAFQSLK 291
                                             ++            + +   A   +K
Sbjct: 256 VGPIRSGVGFHILKVNDIRGADKTVSVTELHARHILLKPSPVMTDDQARAKLSAAAADIK 315

Query: 292 KGK-KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            GK  F  +A+E     G ++    LG  S + I D +  D++  L +KG+ +  +H SF
Sbjct: 316 SGKASFATIAKEISQDPGSAMQGGDLGWASPD-IYDPAFRDAVMKL-QKGEISAPVHSSF 373

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+ +  + + +     +    K      +   K +E+ +   + 
Sbjct: 374 GWHLIQLVDSR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 416


>gi|221633228|ref|YP_002522453.1| putative post-translocation molecular chaperone [Thermomicrobium
           roseum DSM 5159]
 gi|221156643|gb|ACM05770.1| putative post-translocation molecular chaperone [Thermomicrobium
           roseum DSM 5159]
          Length = 464

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 11/125 (8%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG----KSLSDISLGSFSKEYIPD 322
            E      ++   ++ A++A   ++ G  F  +A E+      + +   LG   + Y+P 
Sbjct: 289 AEQIHAAHILLATREAAEQALADIQGGADFATIARERSIDSDTAPNGGDLGWLPRGYMP- 347

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            +  +  F+LA  G+    +   +G+ I  V    P   +S     + +   +R    S 
Sbjct: 348 SAFDEVAFALA-PGEVGGPVQTQYGWHIVKVLERDPDRPLS-----ERMLQALRGQALSR 401

Query: 383 KVKED 387
            + E 
Sbjct: 402 WLDEQ 406



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/101 (9%), Positives = 25/101 (24%), Gaps = 20/101 (19%)

Query: 41  STVVSVGRQKVPFSSF----INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL--- 93
             VV V  + +  + +          ++    Q    +   +  +   L  +    L   
Sbjct: 66  QVVVEVNGEPITRADYWKMRRLELLNQISQYQQLANLMSGQQSVQYQQLADQARQQLTTV 125

Query: 94  -------------VSGATLDQFIEDIGLEADHGRVWGEIAR 121
                        +    + Q +  +G+  D   V      
Sbjct: 126 ERDPINQATVGQMIDDRLVLQRMGQLGVALDEREVEDYTVS 166


>gi|15611231|ref|NP_222882.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           J99]
 gi|10720360|sp|Q9ZMQ7|Y175_HELPJ RecName: Full=Uncharacterized protein jhp_0161; Flags: Precursor
 gi|4154677|gb|AAD05744.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
           J99]
          Length = 299

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E    +++   ++ N       + +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLNQTP-EFKAMMEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KKI+I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++++ K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|208434128|ref|YP_002265794.1| peptidyl-prolylcis-transisomerase C [Helicobacter pylori G27]
 gi|208432057|gb|ACI26928.1| peptidyl-prolylcis-transisomerase C [Helicobacter pylori G27]
          Length = 299

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E    +++   ++ N       D +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KKI+I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++++ K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|322381169|ref|ZP_08055172.1| PrsA-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154745|gb|EFX47016.1| PrsA-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 303

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/382 (13%), Positives = 116/382 (30%), Gaps = 110/382 (28%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
             VV+ V F+I+G + A  +    + V  +G+ K+       +     G           
Sbjct: 16  LAVVVLVCFVIFGFTGA--ASGNGTVVAEIGKTKIRKGDLEQNLITHYGS---------- 63

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
                       +L+ ++    +    +  GL+     +  E+      +  +  F    
Sbjct: 64  -----------SVLNQMLDREAIKMEAQSAGLQISDADIDKELKVMMQAYESEEVF---- 108

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           + S   + G++ +E  D                                      V Y +
Sbjct: 109 YQSMKEQLGMSRQEVKD-------------------------------------DVYYKL 131

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
           L  +        S++ +  + + + + Y                                
Sbjct: 132 LLEKVATKDIQVSDSEIQDYIQAHPEEY-------------------------------- 159

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLG 313
                          + ++    +++A++   +  KG  F +LA ++       +   LG
Sbjct: 160 --------AKKREMHLRRVTTKTREQANKVVAAFSKGDDFAKLARDRSIDDYANNGGDLG 211

Query: 314 SFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              ++  + D  +      L K G  +  +  + GY+I  +   K    +  Q +K+ + 
Sbjct: 212 WVKEDDPLTDKQVMKQAKDL-KVGQISKPVQTNEGYLIVFLQESKDKGGLDEQTIKETVR 270

Query: 373 NQMRITKASEKVKEDYKRLEEF 394
            Q+ + KA   +K+  K+L E 
Sbjct: 271 KQLALQKAPS-IKDLSKKLREK 291


>gi|285019522|ref|YP_003377233.1| ppic-type peptidyl-prolyl cis-trans isomerase [Xanthomonas
           albilineans GPE PC73]
 gi|283474740|emb|CBA17239.1| probable ppic-type peptidyl-prolyl cis-trans isomerase protein
           [Xanthomonas albilineans]
          Length = 455

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 55/445 (12%), Positives = 121/445 (27%), Gaps = 71/445 (15%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSG---SSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           + K     L     I G+S                 V    V  S    + +      + 
Sbjct: 1   MTKTLSAFLLAVLAIAGVSAQAAVQQTQPLDRIAAVVDEDVVLQSELDRAVRNVKAQYAG 60

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
           +     +++      L +++L+ LV            G+      +   IA       + 
Sbjct: 61  R-----DTQLPPDNVLRRQVLERLVLVKLQVARANSTGIHVSDDELNRAIASI----AQQ 111

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFE 188
           N    D    ++A +G++  ++ +     ++   +   F    +  S   +D A      
Sbjct: 112 NNTDVDGLRKKIAADGMSYDDFRNSVRDEITVQRLRQSFAQSRINVSESEVDAALTQQAT 171

Query: 189 NRS---------------------------------VDYIVLNNRHVPAIADPSNAVLT- 214
             +                                 +D   ++          S   L  
Sbjct: 172 TGTQYHLAHILVGLPEGATAEQIKTAQGKIDGVKSLIDKGEIDFNAAAVRYSDSPNALEG 231

Query: 215 -----QWFEKYKDNY------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
                +  ++  + +        P             +  K +E+ +     E +   E 
Sbjct: 232 GDLGWRSLDEIPNAFAQLIRDMKPGQVAGPLRGPSGFQLLKLVEVRDAAANPEKKTVTEY 291

Query: 264 YFSPEIRTVEQLVFPNQKEA--DEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317
           +    +  V         +A  +     +  G  F ++A+E     +       LG F  
Sbjct: 292 HARHILARVSDAQPDAAAKAKIETLRARIAGGADFQKVAKEASDDTNSRNQGGDLGWFPI 351

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
           +          + SL + G  +P      G+ I      + +   S          Q+R 
Sbjct: 352 DAF-GADFGHQVESL-QDGQISPPFRTEAGWHILQRVGERQTDVTS-----DTQRAQVRE 404

Query: 378 TKASEKVKEDYKRLEEFLALGTSMD 402
           T    K++E+Y R  + +     +D
Sbjct: 405 TIGRRKLEEEYNRFLQEMRGEAYVD 429



 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 87/274 (31%), Gaps = 39/274 (14%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             +L +  V      G+  S+  L++A     +         NN  V  +     A    
Sbjct: 78  RLVLVKLQVARANSTGIHVSDDELNRAIASIAQQ--------NNTDVDGLRKKIAADGMS 129

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +     D++R      I+         + +I +S  E+ A   +      +     +  +
Sbjct: 130 Y-----DDFRNSVRDEITVQRLRQSFAQSRINVSESEVDAALTQQA---TTGTQYHLAHI 181

Query: 276 VFPNQKEADEAFQSLKKGK-------------KFIQLA---EEQGKSLSDISLGSFSKEY 319
           +    + A        +GK              F   A    +   +L    LG  S + 
Sbjct: 182 LVGLPEGATAEQIKTAQGKIDGVKSLIDKGEIDFNAAAVRYSDSPNALEGGDLGWRSLDE 241

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-----IANQ 374
           IP+ + A  I  + K G     + G  G+ +  +  ++ +     ++   +     I  +
Sbjct: 242 IPN-AFAQLIRDM-KPGQVAGPLRGPSGFQLLKLVEVRDAAANPEKKTVTEYHARHILAR 299

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
           +   +     K   + L   +A G    ++++  
Sbjct: 300 VSDAQPDAAAKAKIETLRARIAGGADFQKVAKEA 333


>gi|329903502|ref|ZP_08273518.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [Oxalobacteraceae bacterium IMCC9480]
 gi|327548325|gb|EGF33013.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [Oxalobacteraceae bacterium IMCC9480]
          Length = 475

 Score = 90.1 bits (222), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 76/481 (15%), Positives = 150/481 (31%), Gaps = 96/481 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +      +        + Q+      S+  +   L+K+IL+ ++     
Sbjct: 64  DSIVAVVNSDVITRLDLNSRVALVETRMKQQ-----GSQLPQRALLEKQILERMIVDRAQ 118

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q   D G++ D   +   +AR      + NK S   F ++L REG     + +   + +
Sbjct: 119 LQLAADSGIKIDDVMLDRAMARL----AEQNKLSMQDFRNQLEREGTPFSRFREEIREEI 174

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +   +                         R VD               + + +  + + 
Sbjct: 175 AMQRIRE-----------------------REVD----------NKLQITESEVDNYLDA 201

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            K+                             ++Q EY   +     PE  T EQ+    
Sbjct: 202 EKNA---------------------------PQIQPEYNLAQILIRIPENATAEQI-AAR 233

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  AD+  + L+ G  F +LA        +L    LG  + + +P +   D++  L  +G
Sbjct: 234 RARADDVARQLRSGADFAKLAASYSDSIEALKGGELGWRTADRLPQL-FVDAVARL-NEG 291

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK-----------ASEKVK 385
           + + VI  + G+ I  V+  +     S        A Q    +           A+E ++
Sbjct: 292 ELSAVIKSASGFHILKVAGKRTRSADSSTASAAAPAVQQTRARHILIKVNTIVTAAEALR 351

Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
           +     +       + +E+++      +        G    G  V        LL     
Sbjct: 352 KLTDLKQRLDNKAATFEELAKLYS-NDLSASKGGDLGWIYPGDTVPEFERAMNLLK---- 406

Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
              P      +  P G Y  +++ E   ++D   E      ++  +  K  E       Q
Sbjct: 407 ---PGEVSAPIETPFG-YHLIEVIERK-SQDVSQERKRLSARQALRERKLEEATQDWIRQ 461

Query: 506 L 506
           L
Sbjct: 462 L 462


>gi|88707182|ref|ZP_01104874.1| PpiC-type peptidyl-prolyl cis-trans isomerase domain protein
           [Congregibacter litoralis KT71]
 gi|88698587|gb|EAQ95714.1| PpiC-type peptidyl-prolyl cis-trans isomerase domain protein
           [Congregibacter litoralis KT71]
          Length = 295

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 76/227 (33%), Gaps = 29/227 (12%)

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS-NDELQAE 256
                     PS+     ++  +             Y         +  E       +  
Sbjct: 73  KLAAEADKITPSDDD---YWTLHAAL------VGAKYEYMFKRLVSEVSEPDFEPLARER 123

Query: 257 YEKNKEKY-FSPEIRTVEQLVF---------PNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           Y   K+KY F PE+R    ++            + +A      L+ G  F  +  E    
Sbjct: 124 YVTQKDKYAFVPEVRASSHILLISPPGIDRTEVRAKAQGLLDQLRAGADFEAMVAEYSDD 183

Query: 307 LSD----ISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
                   SLG + +   P      ++++F +   G+++ V    FG  I  +  ++ S 
Sbjct: 184 AGTRARKGSLGKYIRFGDPGITPPYSEALFEIENVGEYSEVTDSQFGVHIIRLDAVQESA 243

Query: 361 TVSFQEVKKDIANQMRIT---KASEKVKEDYKRLEEFLALGTSMDEI 404
              F +V+  I  +++      A ++V+  +   ++    G  M+E+
Sbjct: 244 YAEFDKVRDVIITEIKREFAGLARDEVRGRFSITDDLYINGELMEEL 290


>gi|237749474|ref|ZP_04579954.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter
           formigenes OXCC13]
 gi|229380836|gb|EEO30927.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter
           formigenes OXCC13]
          Length = 256

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 8/149 (5%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQ 298
           +    K  +S++E++AEY++  +         V+ ++  ++  AD   + + K    F +
Sbjct: 98  NNYVTKNPVSDNEVKAEYDRLVKMQKGQTEYHVKHILVKDKATADSIIKQVSKNPASFEK 157

Query: 299 LAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHV 353
           LA+E+    +       +G  +   +     +D++ SL KKG  +   +   FGY I  V
Sbjct: 158 LAQEKSLDKASAARGGDMGWATAGDLVKP-FSDAMVSL-KKGQVSKTPVQTEFGYHIIKV 215

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASE 382
            + +     +++++K  +   M+  K  E
Sbjct: 216 VDSQKVKIPTYEQIKPKLKASMQYRKWQE 244


>gi|254778889|ref|YP_003056994.1| Peptidyl-prolyl cis-trans isomerase C (PPIase) (Rotamase); putative
           signal peptide [Helicobacter pylori B38]
 gi|254000800|emb|CAX28724.1| Peptidyl-prolyl cis-trans isomerase C (PPIase) (Rotamase); putative
           signal peptide [Helicobacter pylori B38]
          Length = 299

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E    +++   ++ N       D +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLDQTP-EFKAMMEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KKI+I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++++ K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|293392898|ref|ZP_06637215.1| peptidylprolyl cis-trans isomerase SurA [Serratia odorifera DSM
           4582]
 gi|291424432|gb|EFE97644.1| peptidylprolyl cis-trans isomerase SurA [Serratia odorifera DSM
           4582]
          Length = 433

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/436 (14%), Positives = 136/436 (31%), Gaps = 72/436 (16%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
            + L ++         + A  +      V +V    V   S +N   Q + + +Q+ G  
Sbjct: 6   TLILGLVVCA------NAAFAAPQEVDKVAAVVDNGVVLESDVNGLLQSVKLNAQQAGQQ 59

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           +  ++     L  +IL+ L+      Q  + +G+      +   I          N+ S 
Sbjct: 60  LPDDK----TLRHQILERLIMDNIQLQMAKKMGINVTDADLDKAIGNIAA----QNRMSI 111

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENR--- 190
           D   SRLA EG+N   Y     K +  T+V        +      +D   +         
Sbjct: 112 DQLRSRLAYEGLNYNTYRSQIRKEMLITEVRNNEVRRRVTILPQEVDALAKQVGAQNGSD 171

Query: 191 ---SVDYIVLNNRHVPAIADPSNAVL--------------------------TQWFEKYK 221
              ++ +I++     P+      A                                    
Sbjct: 172 TEMNISHILIPLPENPSQQQVDEAETLAKRLIGEINSGADFGKLAITYSADSQALKGGNM 231

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV 276
              +  E   +        +K   +      +     K  +   + +           ++
Sbjct: 232 GWGKLQEIPTLFAERLVSAKKGDVVGPIRSGVGFHILKVNDLRGASQSISVTEVHARHIL 291

Query: 277 FP---------NQKEADEAFQSLKKGK-KFI----QLAEEQGKSLSDISLGSFSKEYIPD 322
                       + + +E   ++K GK KF     QL+++ G +L    LG  S + I D
Sbjct: 292 LKPSVVMTDDQARAKLEEVAAAVKSGKAKFADEAKQLSQDPGSALQGGDLGWASPD-IYD 350

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            +  D++  L +KG+ +  +H +FG+ +  + + +                  R+    +
Sbjct: 351 PAFRDALLKL-QKGEVSQPVHSAFGWHLIQLLDTRQVDKTD----AAQKERAYRMLFNRK 405

Query: 383 KVKEDYKRLEEFLALG 398
             +E    ++E  A  
Sbjct: 406 FAEEAQTWMQEQRAAA 421



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 82/240 (34%), Gaps = 19/240 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR+   K +       +E  +++ I   E+ A  ++   +  S     +  ++ P 
Sbjct: 124 NYNTYRSQIRKEMLITEVRNNEVRRRVTILPQEVDALAKQVGAQNGSDTEMNISHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--L 325
                       +  A      +  G  F +LA         +  G+     + ++    
Sbjct: 184 PENPSQQQVDEAETLAKRLIGEINSGADFGKLAITYSADSQALKGGNMGWGKLQEIPTLF 243

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEK 383
           A+ + S AKKGD    I    G+ I  V++++  S ++S  EV    I  +  +    ++
Sbjct: 244 AERLVS-AKKGDVVGPIRSGVGFHILKVNDLRGASQSISVTEVHARHILLKPSVVMTDDQ 302

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
            +   + +   +  G    + +   K +S D       G           P     L ++
Sbjct: 303 ARAKLEEVAAAVKSGK--AKFADEAKQLSQDPGSALQGGDLGWASPDIYDPAFRDALLKL 360


>gi|219685287|ref|ZP_03540106.1| basic membrane protein [Borrelia garinii Far04]
 gi|219673060|gb|EED30080.1| basic membrane protein [Borrelia garinii Far04]
          Length = 336

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 122/374 (32%), Gaps = 84/374 (22%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70
            K FL ++ +   I G++    S + ++ V  +     + +  + F +     + +  + 
Sbjct: 1   MKSFLFLVILG--IMGIN----SFAQNTPVAIINLYKNEIITKTGFDSK----VDIFKKT 50

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
            G  + +         K++L  L++     Q     G++     V   I     F   + 
Sbjct: 51  QGRDLTAAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN- 101

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
             + +     + ++G N  E +    + LS   +V                      + R
Sbjct: 102 -LTDEQIKQMIEKQGTNWSELLASMKRSLSSQKLVLK------------------QAQPR 142

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
                         +  PS   + +++E  K  +  P+  R+S+I F   +K++   +  
Sbjct: 143 -----------FSEVKTPSEKEIVEYYEANKTKFVNPDISRVSHIFFSTKDKKRSDVLDQ 191

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
                   KN            +++ F      +EA +     +     ++ +   L  +
Sbjct: 192 A-------KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFL 229

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366
           S G  + + +        +F+   KGD +  I    G+ I  V+       +   +    
Sbjct: 230 SRGDQNAQNLLGADFIKEVFNF-NKGDISSPIASKEGFHIIKVTEKYAQRFLGLNDKVSP 288

Query: 367 -----VKKDIANQM 375
                VK  I N M
Sbjct: 289 TTDLIVKDAIRNNM 302


>gi|238026987|ref|YP_002911218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia glumae
           BGR1]
 gi|237876181|gb|ACR28514.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia glumae
           BGR1]
          Length = 259

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 4/132 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK + S+ +++A Y++  +     E   +  ++  N++ A E    +K G KF  L
Sbjct: 103 EDFVKKNQPSDADIKARYDELTKSVSGNEY-HLHHILVDNEQLAKELIAKIKAGAKFEDL 161

Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G       P       A++   L K       +   FG+ I  V ++
Sbjct: 162 AKQYSKDPGSAKNGGDLDWADPKSFVPEFANAATHLQKGQMTDTPVKTQFGWHIIRVDDV 221

Query: 357 KPSFTVSFQEVK 368
           +P       +VK
Sbjct: 222 RPVAPPPLDQVK 233


>gi|210134373|ref|YP_002300812.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori P12]
 gi|210132341|gb|ACJ07332.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori P12]
          Length = 299

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E    +++   ++ N       D +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KK++I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++++ K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|217970665|ref|YP_002355899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T]
 gi|217507992|gb|ACK55003.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T]
          Length = 260

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 68/166 (40%), Gaps = 5/166 (3%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           ++   I   + +  +   + + EL+ EYE  K +    E +    ++   + +A      
Sbjct: 95  RQAILIRAYLQDYVRTNPVDDAELKKEYEAIKGRMGDKEYKP-RHVLVETEDQAKAIIAR 153

Query: 290 LKKGKKFIQLAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           L+ G  F ++A+E    G       LG  S   +     +D++  L K    T  +   F
Sbjct: 154 LQGGTAFEEVAKESRDPGSKERGGELGW-SNPAMYVKPFSDAMVQLQKGKYTTTPVKSDF 212

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY +  + +++      F+EVK  +  +++  K    V +  ++ +
Sbjct: 213 GYHVIQLDDVRDVQPPPFEEVKPQLQQRLQQQKIERHVLDLREKAK 258


>gi|228924392|ref|ZP_04087629.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835272|gb|EEM80676.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 290

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 78/214 (36%), Gaps = 28/214 (13%)

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD--- 238
            ++   E   +D   +++       D     L +       +Y   +  +    L D   
Sbjct: 61  LQQVMLEKILLDKYKVSDDETKKNVD----ELKKEMGDNFKSYLTQKNVKNEDELKDKLK 116

Query: 239 ---VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                EK  K  I+  E++  Y+          I  V  ++  ++K A E  + +   + 
Sbjct: 117 TQMAFEKAIKASITEKEIKNYYK---------PILKVSHILVKDEKTAKEIKEKINNSED 167

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           F  +A+E  +          LG  +   +   D    ++ ++L + G  +  I  SFGY 
Sbjct: 168 FTTVAKEHSEDPGSKEKGGELGELNAFQMDRMDPKFKEATYNL-ETGQVSEPIKSSFGYH 226

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           I  +   K      F + K++I+ ++   +  ++
Sbjct: 227 IIKMIEKKE--LKPFNQEKENISKELEAKRLKDQ 258


>gi|261837623|gb|ACX97389.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori 51]
          Length = 299

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 13/175 (7%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
              + +      E+ KKI+I   E+Q  Y  NK++ F  +      ++   + EA     
Sbjct: 116 QALVEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIIS 175

Query: 289 SL------KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336
            +      KK  KFI+LA       +         LG F K  +     + + F+L    
Sbjct: 176 EIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGD 234

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                +   FGY I ++ +     T ++ + K  I   ++     E++ +  + L
Sbjct: 235 YTKTPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|311280964|ref|YP_003943195.1| SurA domain-containing protein [Enterobacter cloacae SCF1]
 gi|308750159|gb|ADO49911.1| SurA domain protein [Enterobacter cloacae SCF1]
          Length = 428

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 112/369 (30%), Gaps = 57/369 (15%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDNTLRHQILERLIMDQIILQMGQKMGVKVSDEQLDQAIASI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191
           + D   SRLA +G+N   Y     K +  ++V        +      +D   +       
Sbjct: 110 TMDQMRSRLANDGLNYNTYRSQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQMGNQND 169

Query: 192 VDY------IVLNNRHVPAIADPSNAVLTQW------------------FEKYKDNY--- 224
                    I++     P     S A                       +   +      
Sbjct: 170 ASTELNLSHILIPLPENPTSDQVSEAEAQARSVVEQARGGADFGKLAITYSADQQALKGG 229

Query: 225 -----RAPEYKRISYILFDVHEKEKKI-----EISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                R  E   I        +K   I      +    ++    + + +  S        
Sbjct: 230 QMGWGRIQELPSIFAQALSTAKKGDIIGPIRSGVGFHVIKVNDLRGQSQTISVTEVHARH 289

Query: 275 LVFP---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321
           ++            + + ++    +K GK  F + A+E  +     + G    ++   I 
Sbjct: 290 ILLKPSPIMSDDQARAKLEQVAADIKSGKTTFEKAAKELSQDPGSANQGGDLGWATPDIY 349

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           D S  D++  L+K G  +  +H SFG+ +  + + + +   +    K      +   K S
Sbjct: 350 DPSFRDAVMKLSK-GQVSAPVHSSFGWHLIQLLDTR-NVDRTDAAQKDKAYRMLMNRKFS 407

Query: 382 EKVKEDYKR 390
           E+     + 
Sbjct: 408 EEAATWMQE 416



 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 84/239 (35%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR+   K +       +E  ++I +   E+ A  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRSQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQMGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A    +  + G  F +LA         +  G      I +  S+ 
Sbjct: 184 PENPTSDQVSEAEAQARSVVEQARGGADFGKLAITYSADQQALKGGQMGWGRIQELPSIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ +  V++++  S T+S  EV    I  +     + ++ 
Sbjct: 244 AQALSTAKKGDIIGPIRSGVGFHVIKVNDLRGQSQTISVTEVHARHILLKPSPIMSDDQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +  E  +  K +S D    +  G           P     + ++
Sbjct: 304 RAKLEQVAADIKSGKTTFE--KAAKELSQDPGSANQGGDLGWATPDIYDPSFRDAVMKL 360


>gi|285808215|gb|ADC35749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [uncultured bacterium
           293]
          Length = 392

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 106/357 (29%), Gaps = 84/357 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK--KILDNLVSGA 97
              +VSV    V  S F          I+   G  +          D   +IL   +   
Sbjct: 31  ERVIVSVNGGIVSQSEFEQ------RQIAAVQGARIGPSEVEKYLRDNNARILQEAIDDL 84

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
            L Q   ++G +     V   I         +N  S      +L REG+   +   +  +
Sbjct: 85  LLVQRASELGFKVPTTYVDETIEGI---KKDNNIPSDQDLQDQLRREGMTLSDLRRNIER 141

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            +SR  V+                                  R +      S+A     +
Sbjct: 142 QVSRRWVLQ---------------------------------RELEGKTSVSDAEARAEY 168

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +K K  Y  P    +  I+    +                                    
Sbjct: 169 QKNKAEYDKPGTVTLREIVVGGED-----------------------------------A 193

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAK 334
             +  A++  +  + G+ F  LA+    +    +   LG  S   +    LA  +F+L K
Sbjct: 194 ATRARAEDVAKRARAGEDFAALAKSTSSAASAKNGGELGQLSHTDLA-PDLARIVFALPK 252

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            G  T  +  + G+ I  V +      V F++VK +I  ++   KAS +     + L
Sbjct: 253 GG-VTDPVPVAKGFRILKVEDRSEGGLVPFEQVKAEITRKLVQEKASGEYDRYIEGL 308


>gi|295111546|emb|CBL28296.1| SurA N-terminal domain. [Synergistetes bacterium SGP1]
          Length = 368

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 62/454 (13%), Positives = 136/454 (29%), Gaps = 104/454 (22%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIW-------GLSDALFSVSGSSTVVSVGRQKVPF 53
           ML+ +R   +  +  I +  L   FL++       G S +         V +V  + +  
Sbjct: 1   MLKNLRTHMKWIMITIVVAFLLSTFLMYEGRSGRRGPSRSADGTMTDYEVAAVDGRPLMR 60

Query: 54  SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
           S   N  +  L         + N+       + + +LD  V    L+  ++   +     
Sbjct: 61  SELENRLRAYLEN-----SGLRNAASLDLPAVYQAVLDQYVLERQLESEVKKADIAISDA 115

Query: 114 RVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
                +         D+ F + + F + L R+GI+  EY     + L+   ++ M VG  
Sbjct: 116 DAEQAMKA-----YADSAFPTREAFYAALERQGISSAEYKKSLARQLAVQQLLHMAVG-- 168

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN-YRAPEYKR 231
                                               S     ++++  KD  +R P    
Sbjct: 169 --------------------------------DVTVSEDEAVKFYDSIKDQLFRTPAGVN 196

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +                                            F    +A+     L+
Sbjct: 197 LQVAR----------------------------------------FGASADAEALRAKLQ 216

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKE--YIPDVSLAD---SIFSLAKKGDFTPVIHGSF 346
            G  ++Q     G +L+ + + S ++E  ++P+ +      +  +    G  +PV   + 
Sbjct: 217 AGTDWVQ--ATSGDALASMDVLSVTREPLFLPESAFESGVLAELASLDVGAVSPVFSPAS 274

Query: 347 G-YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL---EEFLALGTSMD 402
           G + +A  +         +++V  D+   +R  +   K+ +    L    E +    S+ 
Sbjct: 275 GDFSVAVKTERVSESVRPYEDVSSDVRAFLRSQEERRKLNDYEAALMAKAEVVIYDASLF 334

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
             S      +    +   A      +  +    K
Sbjct: 335 PASADTTASAEPQAVSTDASASADVEPASDDAAK 368


>gi|308182349|ref|YP_003926476.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori PeCan4]
 gi|308064534|gb|ADO06426.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori PeCan4]
          Length = 299

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 13/175 (7%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
              + +      E+ KKI+I   E+Q  Y+ NK++ F  +      ++   + EA     
Sbjct: 116 QALVEFWAKKQAEEVKKIQIPEKEMQDFYDANKDQLFVKQEAHARHILVKTEDEAKRIIS 175

Query: 289 SL------KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336
            +      KK  KFI+LA       +         LG F K  +     + + F+L    
Sbjct: 176 EIDKQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGN 234

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                +   FGY I ++ +     T ++ + K  I   ++     E++ +  + L
Sbjct: 235 YTKTPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQERLFQERMNQRIEEL 289


>gi|163856017|ref|YP_001630315.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii DSM
           12804]
 gi|163259745|emb|CAP42046.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii]
          Length = 258

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 4/157 (2%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FI 297
           + +   K  +++ ++QAEY+K K++        V  ++  ++K A++    +K  K  F 
Sbjct: 99  MADYLAKHPVTDQQIQAEYDKAKQQQAGQMEYKVRHILVEDEKTANDLLAQIKGNKSKFA 158

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            LA++  K     + G       P       AD++ SL K       +   FG+ I  V 
Sbjct: 159 DLAKQNSKDPGSAAKGGDLGWASPTNYVKPFADTVSSLKKGQLADKPVQTQFGWHIIEVE 218

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +P       +V+  +   +R    +   KE  ++ 
Sbjct: 219 DTRPVEFPPLDQVRPQLEEMLRQQTLTAYQKELREKA 255


>gi|149926466|ref|ZP_01914727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
           MED105]
 gi|149824829|gb|EDM84043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
           MED105]
          Length = 260

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 5/222 (2%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           V G  +       ++ +Q KR    +  +    +    +        AV        +  
Sbjct: 29  VNGQSIPSALVDFIMAEQEKRGQAASPEMR-ATIRQELINQEVMKQEAVKKGLGSSPEVK 87

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           Y+     +         +  K  ++++ E++  Y +  +     E R    ++   + EA
Sbjct: 88  YQVQMMNQAILANALREDFYKNTKLTDKEVETAYAEIAKMMGGSEFR-ASHILVEQEAEA 146

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTP 340
                 L KG KF  +A+ + K       G       P+      + ++  L K      
Sbjct: 147 KAIIDQLGKGGKFADIAKAKSKDPGSAPNGGDLDWANPNSFVPEFSQAMVGLKKGEYTKT 206

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            +   FGY +  +++ + +     +E++  +  +M   K  E
Sbjct: 207 PVKSQFGYHVILLADTRQATPPKLEEIRPQLEQKMINDKWEE 248


>gi|332530714|ref|ZP_08406644.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
           ATCC 19624]
 gi|332039835|gb|EGI76231.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
           ATCC 19624]
          Length = 266

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 4/156 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
              ++   +++ + Q  Y++        E      ++ P + EA      LKKG KF  L
Sbjct: 110 ARFQQTNPVTDADFQEGYQRFVAANGGKEY-HARHILVPTEAEAQALLAQLKKGAKFDAL 168

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K     + G    ++         A ++ +L K       +   FG+ +  V ++
Sbjct: 169 AKQHSKDPGSAARGGDLDWAPAQGYVPEFAAALQALGKGQTSEAPVQTQFGWHLLQVEDV 228

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +     S  +VK  +A ++   K  E  K+   + +
Sbjct: 229 RDIQLPSLNDVKPQLAQEIGQRKFEEFQKDLRAKAK 264



 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/119 (10%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
            ++A  L+ +  K+G  F  + K       +  +   +D    + +  +  + + +    
Sbjct: 149 EAEAQALLAQL-KKGAKFDALAKQHSKDPGSAARGGDLDWAPAQGYVPEFAAALQALGKG 207

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                P++    + + +V + +   +   +     L Q + +   +     L+++  + 
Sbjct: 208 QTSEAPVQTQFGWHLLQVEDVRDIQLPSLNDVKPQLAQEIGQRKFEEFQKDLRAKAKIK 266


>gi|326317152|ref|YP_004234824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373988|gb|ADX46257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 261

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 4/135 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            + +K   +++ E+QAEY+K        E +    ++   + +A     S+KKG KF  +
Sbjct: 105 ADYQKANPVTDAEIQAEYDKYVAANTGKEYK-ASHILVETEDQAKAIIASIKKGAKFEDI 163

Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++Q K     + G       P         ++  L K       +   FG+ +  + ++
Sbjct: 164 AKKQSKDPGSGARGGDLDWATPSSYVAEFTQALVKLDKGKMTQTPVKTQFGWHVIRLDDV 223

Query: 357 KPSFTVSFQEVKKDI 371
           + +      EVK  I
Sbjct: 224 REAKLPKLDEVKPQI 238


>gi|304394142|ref|ZP_07376065.1| peptidylprolyl isomerase PrsA1 [Ahrensia sp. R2A130]
 gi|303293582|gb|EFL87959.1| peptidylprolyl isomerase PrsA1 [Ahrensia sp. R2A130]
          Length = 277

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 82/227 (36%), Gaps = 12/227 (5%)

Query: 178 LLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +  Q  +F    R       +++     A+A        +  +K        E      +
Sbjct: 51  MAQQFAQFPEPQRKARALDALIDIEVFAALAR------KEGIDKDPKLLARMELLNKRAL 104

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                 ++ +  I++++LQA Y+K        +      ++   ++EA    + LK G  
Sbjct: 105 HNGYFTQKVQAGITDEQLQARYDKEIGSAPRQKEVKARHILVKTEEEAKAIIEELKSGAD 164

Query: 296 FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F++LA+ +    S      LG F K  +       + F L         +   FG+ I  
Sbjct: 165 FVELAKTKSTGPSGPQGGDLGFFKKGQMV-PEFEKAAFELEAGKVTETPVKTQFGFHIIK 223

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
           V   + +   +F++ K+ +   +     +E +K   + +   +  G+
Sbjct: 224 VDETRDTPLPTFEQSKEQLRQLVLTEAYAEAIKTGRESVGADVLDGS 270



 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 19/125 (15%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           S      V  VG +++  S    +       ++Q+        +        + LD L+ 
Sbjct: 24  SAQEDKIVAKVGSEEITQSELDQAM----ADMAQQF------AQFPEPQRKARALDALID 73

Query: 96  GATLDQFIEDIGLEADHGRVWG-EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
                      G++ D   +   E+      H  +  F+  V      + GI +++    
Sbjct: 74  IEVFAALARKEGIDKDPKLLARMELLNKRALH--NGYFTQKV------QAGITDEQLQAR 125

Query: 155 YTKML 159
           Y K +
Sbjct: 126 YDKEI 130


>gi|255014827|ref|ZP_05286953.1| parvulin-like peptidyl-prolyl isomerase [Bacteroides sp. 2_1_7]
          Length = 522

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 22/150 (14%)

Query: 262 EKYFSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSD 309
            +  +P    V  ++    K+            A   ++ +++G  F +LA+E     + 
Sbjct: 221 SRKPNPGRVHVAHILIAFPKDSAIQDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAAS 280

Query: 310 IS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 L  F    +       + F+L+K GD + V+   FGY I  + + K     SF+
Sbjct: 281 AKKEGVLPWFGVGEMVQP-FEQAAFALSKPGDLSEVVETRFGYHIIKLIDKKGR--PSFE 337

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           E +K ++ +M      E+  E YK  ++ +
Sbjct: 338 EEEKALSRRMGQ---GERNFELYKAFDDRM 364



 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 15/212 (7%)

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
           +  PE  TV +      +EA   ++ L+KG+    + +   +   +     + +  +P  
Sbjct: 129 FRLPEK-TVSKDTVAVYQEAMRVYERLQKGEDMETVGKALAEKDKEHVACEYVRCLLPMQ 187

Query: 324 S---LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           S     D+ +SL   G  +  +    G+ +  V + KP        V   +    + +  
Sbjct: 188 SLKVFEDAAYSLP-IGVVSEPVRTKLGFHLIKVHSRKP--NPGRVHVAHILIAFPKDSAI 244

Query: 381 SE--KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
            +        + + + +  G    E+++     +              G+ V        
Sbjct: 245 QDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAASAKKEGVLPWFGVGEMVQPFEQ--- 301

Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                F    P      V    G ++   I +
Sbjct: 302 ---AAFALSKPGDLSEVVETRFGYHIIKLIDK 330


>gi|257467204|ref|ZP_05631515.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315918334|ref|ZP_07914574.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692209|gb|EFS29044.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 549

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 83/567 (14%), Positives = 193/567 (34%), Gaps = 91/567 (16%)

Query: 4   IIRKASRTWVAKIFLVVLFVPFLIWGLSDALF------SVSGSSTVVSVGRQKVPFSSFI 57
            IRK  +  + K  + ++ +  +  G            S   +     +  +KV      
Sbjct: 2   AIRKFRK--IMKPVIFIVAIAMIGSGAWLTFTNLLQHHSAGETQYAYQLNGEKVSKVKIA 59

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
                 +  +++  G    S+   S+         +++     Q  ED+ ++     +  
Sbjct: 60  REENNLMEQLNKM-GQGKTSKELVSL----IAFQKVINDELTLQLAEDMKIKVPSSEIKE 114

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-- 175
           E  +      +++  + + F   L+ +G ++K +     + L    V+  F    + S  
Sbjct: 115 EYEK-----IENSIGNKEQFKRMLSVQGYSKKSFKAMLEENLLLQKVMEKFAEEAKKSGK 169

Query: 176 -------NLLLDQAKRFYFENRSVDYIVLNNRHVPAI----------------------- 205
                    L  +      +  S +Y  L  + V                          
Sbjct: 170 DGNLLFQEALAKKRNEMKIDKLSPEYEKLQLKVVEEKDGFKITNVDMADRVTQLMLMTGE 229

Query: 206 --ADPSNAVLTQWFEKYKDNYRAPEYKRI------------SYILFDVHEKEKKIEISND 251
             A  +  V  Q+ E      +A E   +             Y      + + +++I   
Sbjct: 230 EEAKVTEEVKKQFEEGIAFAKKAQEKGVLISKDLPINVQLAEYGKAFFEKLKSEVKIDEV 289

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVF----------PNQKEADEAFQSLKKGKKFI---- 297
           EL   ++ N  +Y       V+  V             +K+A+E  +SLKK + F     
Sbjct: 290 ELSRFFQANHNRYNQHASIDVDVAVLKIVPSKEDIAAIEKKAEETLKSLKK-ENFAKIGA 348

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            L ++  +++    LG F K  +      ++ FS  +   +  VI   FG  + ++  ++
Sbjct: 349 DLQKKSPETVIYEELGWFEKGAMVK-EFEEAAFSSKEAQIYPKVISTQFGKHLLYIQEVQ 407

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
            +   +   + +++A+Q  I K+ ++ +   ++L++      ++  I++   + +     
Sbjct: 408 ENKVKAAHILFREVASQASIDKSLKEAESIKEKLDKKEVTFETLKNINKNL-LFAHTFTG 466

Query: 418 VDFAG---KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
           VD +G     V  K +    Y  ++       DD   K   + L           +    
Sbjct: 467 VDKSGVIQGFVTDKALVDTMYAAEMNKVQIYSDDYAKKAGIIYL-------FSKTKQEED 519

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSS 501
           +   LEEV   V+ ++++ +  +E+  
Sbjct: 520 KIVSLEEVQDRVRDEYRSWRAQQELQK 546


>gi|256841003|ref|ZP_05546510.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298375772|ref|ZP_06985728.1| ppic-type ppiase domain-containing protein [Bacteroides sp. 3_1_19]
 gi|256736846|gb|EEU50173.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298266809|gb|EFI08466.1| ppic-type ppiase domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 533

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 22/150 (14%)

Query: 262 EKYFSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSD 309
            +  +P    V  ++    K+            A   ++ +++G  F +LA+E     + 
Sbjct: 232 SRKPNPGRIHVAHILIAFPKDSAIQDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAAS 291

Query: 310 IS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 L  F    +       + F+L+K GD + V+   FGY I  + + K     SF+
Sbjct: 292 AKKEGVLPWFGVGEMVQP-FEQAAFALSKPGDLSEVVETRFGYHIIKLIDKKGR--PSFE 348

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           E +K ++ +M      E+  E YK  ++ +
Sbjct: 349 EEEKALSRRMGQ---GERNFELYKAFDDRM 375



 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 15/212 (7%)

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
           +  PE  TV +      +EA   ++ L+KG+    + +   +   +     + +  +P  
Sbjct: 140 FRLPEK-TVSKDTVAVYQEAMRVYERLQKGEDMETVGKALAEKDKEHVACEYVRCLLPMQ 198

Query: 324 S---LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           S     D+ +SL   G  +  +    G+ +  V + KP        V   +    + +  
Sbjct: 199 SLKVFEDAAYSLP-IGVVSEPVRTKLGFHLIKVHSRKP--NPGRIHVAHILIAFPKDSAI 255

Query: 381 SE--KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
            +        + + + +  G    E+++     +              G+ V        
Sbjct: 256 QDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAASAKKEGVLPWFGVGEMVQPFEQ--- 312

Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                F    P      V    G ++   I +
Sbjct: 313 ---AAFALSKPGDLSEVVETRFGYHIIKLIDK 341


>gi|121594044|ref|YP_985940.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
 gi|120606124|gb|ABM41864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
          Length = 261

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 4/134 (2%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           + +K   +++ E+QAEY+K        E +    ++   + EA     S+KKG KF  +A
Sbjct: 106 DFQKNNAVTDAEIQAEYDKFVAANAGKEYK-ASHILVEKEDEAKAIIASIKKGGKFEDIA 164

Query: 301 EEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++Q K     + G       P        +++  L K       +   FG+ +  + +++
Sbjct: 165 KKQSKDPGSGTRGGDLDWASPSSYVAEFTEALVKLEKGKMTQTPVKSQFGWHVIRLDDVR 224

Query: 358 PSFTVSFQEVKKDI 371
            +     +EVK  I
Sbjct: 225 EAQLPKLEEVKPQI 238


>gi|107023645|ref|YP_621972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116690730|ref|YP_836353.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
 gi|170734072|ref|YP_001766019.1| SurA domain-containing protein [Burkholderia cenocepacia MC0-3]
 gi|122070635|sp|Q1BTQ6|SURA_BURCA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|105893834|gb|ABF76999.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116648819|gb|ABK09460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
 gi|169817314|gb|ACA91897.1| SurA domain [Burkholderia cenocepacia MC0-3]
          Length = 452

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/410 (12%), Positives = 123/410 (30%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 40  DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERIQ 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D   V   + R      + N  + D +  RL  +G+    + +     L
Sbjct: 95  VQKAKDDGIRIDDATVQATLQRL----AQANGMTLDQYRGRLEAQGVPWSIFTNDARTEL 150

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDYIVL--------NNRHVPAI 205
             + +    V G +  S+  +             + + + +  +            + A 
Sbjct: 151 MLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQADIEAA 210

Query: 206 ADPSNAVLTQ---------WFEKYKDN----------YRAP-----EYKRISYILFDVHE 241
              ++A+L Q           +   +           +++P     +    +  L     
Sbjct: 211 QKKADALLQQAKSGADFERLAKNNSEANDAKKGGDLGFKSPSALPADVVDAASKLRPGQV 270

Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQKEADE---------A 286
               I + +  E+    ++ + +  S          V  ++    +   E          
Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLVDI 330

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
              ++ G  F + A    + G +     LG  S           ++ +L + G  +  I 
Sbjct: 331 RNQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPIR 388

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V N + +   S Q+        +   KA +   +  + L +
Sbjct: 389 TEYGYHLIQVLNRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437


>gi|219684844|ref|ZP_03539786.1| basic membrane protein [Borrelia garinii PBr]
 gi|219671789|gb|EED28844.1| basic membrane protein [Borrelia garinii PBr]
          Length = 336

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 122/374 (32%), Gaps = 84/374 (22%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70
            K FL ++ +   I G++    S + ++ V  +     + +  + F +     + +  + 
Sbjct: 1   MKSFLFLVILG--IMGIN----SFAQNTPVAIINLYKNEIITKTGFDSK----VDIFKKT 50

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
            G  + +         K++L  L++     Q     G++     V   I     F   + 
Sbjct: 51  QGRDLTAAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN- 101

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
             + +     + ++G N  E +    + LS   +V                      + R
Sbjct: 102 -LTDEQIKQMIEKQGTNWGELLASMKRSLSSQKLVLK------------------QAQPR 142

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
                         +  PS   + +++E  K  +  P+  R+S++ F   +K++   +  
Sbjct: 143 -----------FSEVKTPSEKEIVEYYEANKTKFVNPDISRVSHVFFSTKDKKRSDVLDQ 191

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
                   KN            +++ F      +EA +     +     ++ +   L  +
Sbjct: 192 A-------KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFL 229

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366
           S G  + + +        +F+   KGD +  I    G+ I  V+       +   +    
Sbjct: 230 SRGDQNAQNLLGADFIKEVFNF-NKGDISSPIASKEGFHIIKVTEKYAQRFLGLNDKVSP 288

Query: 367 -----VKKDIANQM 375
                VK  I N M
Sbjct: 289 TTDLIVKDAIRNNM 302


>gi|150008996|ref|YP_001303739.1| parvulin-like peptidyl-prolyl isomerase [Parabacteroides distasonis
           ATCC 8503]
 gi|149937420|gb|ABR44117.1| parvulin-like peptidyl-prolyl isomerase [Parabacteroides distasonis
           ATCC 8503]
          Length = 522

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 22/150 (14%)

Query: 262 EKYFSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSD 309
            +  +P    V  ++    K+            A   ++ +++G  F +LA+E     + 
Sbjct: 221 SRKPNPGRIHVAHILIAFPKDSAIQDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAAS 280

Query: 310 IS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 L  F    +       + F+L+K GD + V+   FGY I  + + K     SF+
Sbjct: 281 AKKEGVLPWFGVGEMVQP-FEQAAFALSKPGDLSEVVETRFGYHIIKLIDKKGR--PSFE 337

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           E +K ++ +M      E+  E YK  ++ +
Sbjct: 338 EEEKALSRRMGQ---GERNFELYKAFDDRM 364



 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 15/212 (7%)

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
           +  PE  TV +      +EA   ++ L+KG+    + +   +   +     + +  +P  
Sbjct: 129 FRLPEK-TVSKDTVAVYQEAMRVYERLQKGEDMETVGKALAEKDKEHVACEYVRCLLPMQ 187

Query: 324 S---LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           S     D+ +SL   G  +  +    G+ +  V + KP        V   +    + +  
Sbjct: 188 SLKVFEDAAYSLP-IGVVSEPVRTKLGFHLIKVHSRKP--NPGRIHVAHILIAFPKDSAI 244

Query: 381 SE--KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
            +        + + + +  G    E+++     +              G+ V        
Sbjct: 245 QDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAASAKKEGVLPWFGVGEMVQPFEQ--- 301

Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                F    P      V    G ++   I +
Sbjct: 302 ---AAFALSKPGDLSEVVETRFGYHIIKLIDK 330


>gi|145589158|ref|YP_001155755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047564|gb|ABP34191.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 263

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 66/158 (41%), Gaps = 8/158 (5%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  +K  +S  +LQA Y+  K +Y   E   VE ++   + +A      +K G  F  +
Sbjct: 101 EDYVEKDGVSEADLQAAYDSVKNQYAGKEY-HVEHILVEKEGDAKAIIVQVKSGGNFEDI 159

Query: 300 AE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A+    + G + +   LG  +++ +     + S+  L         +   FG+ +  +  
Sbjct: 160 AKTKSKDPGSAANGGDLGWVTEKALV-PEFSKSMVQLKNGQMTDKPVKSQFGWHVIKMVE 218

Query: 356 IKPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRL 391
           ++ +   S++E+K  +   +   +     K  E  ++L
Sbjct: 219 VRDTKAPSYEELKPQLKQMIVSDQNWQKAKFSEMMQKL 256


>gi|254247257|ref|ZP_04940578.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia PC184]
 gi|124872033|gb|EAY63749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia PC184]
          Length = 454

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/410 (12%), Positives = 123/410 (30%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 42  DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERIQ 96

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D   V   + R      + N  + D +  RL  +G+    + +     L
Sbjct: 97  VQKAKDDGIRIDDATVQATLQRL----AQANGMTLDQYRGRLEAQGVPWSIFTNDARTEL 152

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDYIVL--------NNRHVPAI 205
             + +    V G +  S+  +             + + + +  +            + A 
Sbjct: 153 MLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQADIEAA 212

Query: 206 ADPSNAVLTQ---------WFEKYKDN----------YRAP-----EYKRISYILFDVHE 241
              ++A+L Q           +   +           +++P     +    +  L     
Sbjct: 213 QKKADALLQQAKSGADFERLAKNNSEANDAKKGGDLGFKSPSALPADVVDAASKLRPGQV 272

Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQKEADE---------A 286
               I + +  E+    ++ + +  S          V  ++    +   E          
Sbjct: 273 NPTLIRVPDGFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDI 332

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
              ++ G  F + A    + G +     LG  S           ++ +L + G  +  I 
Sbjct: 333 RNQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPIR 390

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V N + +   S Q+        +   KA +   +  + L +
Sbjct: 391 TEYGYHLIQVLNRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 439


>gi|206559288|ref|YP_002230049.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia J2315]
 gi|198035326|emb|CAR51201.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia J2315]
          Length = 442

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/410 (12%), Positives = 121/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 30  DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRGQVLNQMVLERIQ 84

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D   V   + R      + N  + D + +RL  +G+    + +     L
Sbjct: 85  VQKAKDDGIRVDDATVQATLQRL----AQANGMTLDQYRARLEAQGVPWSIFTNDARTEL 140

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVD----YIVLNNRHVPAIADPS 209
           + + +    V G +  S+  +             + + +     +I        A  + +
Sbjct: 141 TLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQADIEAA 200

Query: 210 NAVLTQWFEKYKD-----------------------NYRAP-----EYKRISYILFDVHE 241
                   ++ K                         +++P     +    +  L     
Sbjct: 201 QKKAEALLQQAKSGADFERLAKNNSEANDAKKGGDLGFKSPSALPADVVEAASKLRPGQV 260

Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQKEADE---------A 286
               I + +  E+    ++ + +  S          V  ++    +   E          
Sbjct: 261 NPTLIRVPDGFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLVDI 320

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
              ++ G  F + A    + G +     LG  S           ++ +L + G  +  I 
Sbjct: 321 RNQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPIR 378

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V N + +   S Q+        +   KA +   +  + L +
Sbjct: 379 TEYGYHLIQVLNRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 427


>gi|88810558|ref|ZP_01125815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
           Nb-231]
 gi|88792188|gb|EAR23298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
           Nb-231]
          Length = 430

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/405 (12%), Positives = 118/405 (29%), Gaps = 75/405 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V      +  K+EL ++ Q++    + +      L  ++L+ L+     
Sbjct: 31  DRIVAVVNDSVV----LQSELKEELIIVRQQLQRQ-DMQLPDPRNLQHQVLEQLILKKLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
                  G+  D   +   + R      + N+ +   F   LA E I  +++ D     +
Sbjct: 86  LDAASRTGISVDDATLDAAVRRV----AEQNQMTLSQFRDALAAEAIGWEDFRDKLRDQI 141

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD---------YIVLNNRHVPAI----- 205
             + +    +      N+   +  +F  + R             + L +   P       
Sbjct: 142 IISRLRHQVMQSRI--NVTPQEIAQFVAQQRGGQSAEYHLGHILVALPDAASPQTIAQAR 199

Query: 206 -----------ADPSNAVLTQWFEKYKDNY--------RAPEYKRISYILFDVHEKEKKI 246
                       + S   L   +   +           +  E   +   L       K  
Sbjct: 200 DKAERIHRQLEQEASFETLAASYSDSQTALQGGDLGWRKQGELPTLIAELISGLPVGKVT 259

Query: 247 EI----SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-----EA----DEAFQSLKKG 293
            +    S   +     + + +           ++          +A    +   + ++ G
Sbjct: 260 PVLRSPSGFHIFKLLARREGERHIITQTHARHILIETNAVVSDRDARRRLESLRKRIENG 319

Query: 294 KKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
             F  LA+              LG      +   +    + SL +  + +   H  +G+ 
Sbjct: 320 DSFAALAKAHSDDSTSAFQGGDLGWVDPGRMV-ATFEQVMDSL-QPDEISQPFHTRYGWH 377

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           I  V N +          K+D     R  +A+++++    +L++ 
Sbjct: 378 IVQVLNRR----------KQDTTEAYRREQAAQQIQNR--KLQDE 410



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 107/382 (28%), Gaps = 57/382 (14%)

Query: 79  RARSVGLDKKILDN---LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
            A++  L  ++LD    +V+ + + Q      L     ++  +  + P      +     
Sbjct: 19  EAQTPLLAAQVLDRIVAVVNDSVVLQSELKEELIIVRQQLQRQDMQLPDPRNLQH----- 73

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
                L +              +L +  +      G+   +  LD A R   E   +   
Sbjct: 74  ---QVLEQL-------------ILKKLQLDAASRTGISVDDATLDAAVRRVAEQNQMTLS 117

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
              +          +             +R     +I          + +I ++  E+  
Sbjct: 118 QFRDALAAEAIGWED-------------FRDKLRDQIIISRLRHQVMQSRINVTPQEIAQ 164

Query: 256 EYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQSLKKGKKFIQLAEEQ 303
              + +          +  ++               + +A+   + L++   F  LA   
Sbjct: 165 FVAQQRG--GQSAEYHLGHILVALPDAASPQTIAQARDKAERIHRQLEQEASFETLAASY 222

Query: 304 G---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
                +L    LG   +  +P  +L   + S    G  TPV+    G+ I  +   +   
Sbjct: 223 SDSQTALQGGDLGWRKQGELP--TLIAELISGLPVGKVTPVLRSPSGFHIFKLLARREGE 280

Query: 361 TVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
                +     I  +     +    +   + L + +  G S   +++     S       
Sbjct: 281 RHIITQTHARHILIETNAVVSDRDARRRLESLRKRIENGDSFAALAKAHSDDSTSAFQGG 340

Query: 420 FAGKDVKGKEVAAIPYKEQLLF 441
             G    G+ VA        L 
Sbjct: 341 DLGWVDPGRMVATFEQVMDSLQ 362


>gi|84684613|ref|ZP_01012514.1| PPIC-type PPIASE domain protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667592|gb|EAQ14061.1| PPIC-type PPIASE domain protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 300

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 6/162 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGK 305
            +  D +QA Y+                ++   + EA +  +  K     F  LA+E   
Sbjct: 132 AVDEDAIQAAYDAQYADAEPTTEWNASHILVETEAEAADLVEQAKAEDADFAALAKEFST 191

Query: 306 SLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
             S      LG FS   + +     ++  +A  GD +  +   FG+ +  ++  +     
Sbjct: 192 GPSGPNGGELGWFSAGMMVEP-FETAVADMA-AGDISDPVQTQFGWHVIKLNETREKGAP 249

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
             +EV++DI  Q++ +   E +              T++D  
Sbjct: 250 PLEEVREDIIGQLQTSAVEEALNALMDGATIERTDVTTLDPA 291


>gi|193214030|ref|YP_001995229.1| SurA domain [Chloroherpeton thalassium ATCC 35110]
 gi|193087507|gb|ACF12782.1| SurA domain [Chloroherpeton thalassium ATCC 35110]
          Length = 439

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 67/508 (13%), Positives = 142/508 (27%), Gaps = 97/508 (19%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFIN-----SWKQELG 65
           + KI   +LF+   + G      S        V  VG + +  S   N     +++ ++ 
Sbjct: 5   LGKIGFALLFM-LALAGSFSKPASAQEMLDGIVAVVGDEAILKSDVDNQAMLYAYQNQIN 63

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
                           + GL K++   L++   L    +   +      V G + +   F
Sbjct: 64  --------------LNTPGLWKEVFTALINQKILLMKAKLDSITVSSEEVDGLVEQRIAF 109

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
             +  +       + +   G +         + +    +V                    
Sbjct: 110 LRERLRTD----EAIVETFGKSIDMLRVDLREEIKSQRLVEELQRQHF------------ 153

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-RAPEYKRISYILFDVHEKEK 244
                             +    SN  +  ++  Y+D+    P    +++I+        
Sbjct: 154 ------------------SDLTVSNEEVVDFYNTYRDSLPEIPAEVEVAHIVIKPKTDSL 195

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
             +                                     E  + L+ GK F +LA  + 
Sbjct: 196 SKQ------------------------------SALDAIQEVQKELQDGKDFAELARAES 225

Query: 305 KSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +      LG    F K         +  F L K+   + ++   FGY I  +   K    
Sbjct: 226 QDPGSARLGGDLGFVKRGEFVRRFEEVAFGL-KENQISGIVETEFGYHIIQLLERKGEAI 284

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
                +K+    ++    A +++ E     E  L+       ++R+         L    
Sbjct: 285 RVRHILKRFDKTKLNDAAAIDQLNEIR---ENVLSGKAEFSMMARQFSEDESSAELGGDI 341

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGK--DDPLSKDHTVALPDGSYM-WVQIKESIPARDRK 478
                 ++   +      +  +        +SK   + L D      V++K   P     
Sbjct: 342 VSPQTNQKRIPLDGLLPAIRSIIETLRPGEISKPTRIQLGDEYAFSIVKLKYFAPKHRLN 401

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQL 506
           LE+    ++      + AE  SS   +L
Sbjct: 402 LEQDYARLRNMALQRQQAERYSSWVEEL 429


>gi|54293303|ref|YP_125718.1| hypothetical protein lpl0351 [Legionella pneumophila str. Lens]
 gi|81679326|sp|Q5WZN0|SURA_LEGPL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|53753135|emb|CAH14582.1| hypothetical protein lpl0351 [Legionella pneumophila str. Lens]
          Length = 429

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/441 (12%), Positives = 129/441 (29%), Gaps = 71/441 (16%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +  V  L  G+  A         V  V    +  S      +     I  +     N + 
Sbjct: 5   IALVCALFSGVCFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 59

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                L K++L +L+      Q  +  G+  ++  +   I +        N  +      
Sbjct: 60  PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 115

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNLLLDQAKRFYFE---------- 188
            + ++GI+ +EY  +  K +  + V    VG  +  +N  +DQ  +              
Sbjct: 116 EITKQGISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVDQYLKTAGRIENSNLTYHL 175

Query: 189 ------------NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY------------ 224
                        R +    +   ++               E+    +            
Sbjct: 176 KNIVIPLSEEPTTRQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHL 235

Query: 225 -RAPEYKRISYILFDVHEKEKKIEISND----ELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
              PE      +   V +    I   N     +L A   +N+    +     V  ++   
Sbjct: 236 AELPEVFAKEVVHMKVGQVAGPIRAGNGFHLIKLVAVGGENQRHVIT--QTHVRHILLKP 293

Query: 280 Q---------KEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLA 326
                     K+ +  ++ ++ GK F  +A++     +       LG  +   +      
Sbjct: 294 DASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELV-PEFE 352

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKV 384
            ++ SL      +  +   +G+ +  V   +        E   K+ +   ++  K  E V
Sbjct: 353 KTMNSLPLH-KVSKPVKTQYGWHLIEVIARR---QKDDSEAFKKQQVRQFLQQRKFVEAV 408

Query: 385 KEDYKRLEEFLALGTSMDEIS 405
           +   + L     +     +++
Sbjct: 409 QNWQQHLRSQAYINIVDKDLA 429


>gi|294102245|ref|YP_003554103.1| hypothetical protein Amico_1258 [Aminobacterium colombiense DSM
           12261]
 gi|293617225|gb|ADE57379.1| hypothetical protein Amico_1258 [Aminobacterium colombiense DSM
           12261]
          Length = 358

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 134/403 (33%), Gaps = 97/403 (24%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSST----VVSVGRQKVPFSSF 56
           +  +R+  R W+   F+V+  +  F ++G S    +  G       V  +  +KV  S+ 
Sbjct: 3   MRSLRENMR-WIMFGFVVIFVLSIFGMYGFSGRQRAPKGEGVQDYAVAEIDGKKVMRSTL 61

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
             +    +         V +      + + + +LD ++    L + +E  G++A    + 
Sbjct: 62  EANVMNYVER-----NNVKDVSSNDLMAIRQAVLDGMIIETELAKAVESRGVKASDQEID 116

Query: 117 GEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
             I +        N+F + + F   L+   I       +    LS+  VV          
Sbjct: 117 DVIKQI------SNQFPTIEAFQKHLSDNDIKMDALRANIGTQLSQQKVVEQ-------- 162

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA-PEYKRISY 234
                                       +    +   + ++++K KD + + P  +++ Y
Sbjct: 163 --------------------------AASTVVVTPEEVQEFYDKGKDAFFSRPAGRKVVY 196

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-G 293
                                                     F N++ AD+ ++ LKK G
Sbjct: 197 AR----------------------------------------FSNKEAADKIYEELKKDG 216

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK--KGDFTPVIH-GSFGYVI 350
            K+  L EE        S+G  +  ++P+  + D   +L     G   P I   S   ++
Sbjct: 217 SKWDALLEEVTSEDKKESIGYEAPVFVPESGMQDKFETLKDLSVGQVAPPIEITSNDIMV 276

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                +  + TVSF EV  DI   +   K  E   +    L+E
Sbjct: 277 VLNKEVLEASTVSFDEVSNDIKALLTNQKNEEAQMKFVSELKE 319


>gi|122070668|sp|Q4K4X7|SURA_PSEF5 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 426

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/408 (11%), Positives = 132/408 (32%), Gaps = 64/408 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S       +    I+++ G V  +       L++++L+ L+     
Sbjct: 19  DKVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPTSV-----LEQQVLERLIVENLQ 73

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++ ++  D   + +
Sbjct: 74  LQIGERSGIRITDEELNQAIGTI----AQRNSMSIEQFRAALAHDGLSYEDARDQVRREM 129

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
             + V        ++ S   +         + +  + + L N  +P     ++  +    
Sbjct: 130 IISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPESANSEAIQSAA 189

Query: 218 EKYKDNYRAPEY-------------------------KRISYILFDVHEKEKKIEISNDE 252
            +  + Y+  +                          ++ + +      +   + + +  
Sbjct: 190 RQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMGWRKAAQLPPPFDRELSAMAVGDIT 249

Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
                     +    +K        +   V  ++            ++ A + +  ++ G
Sbjct: 250 QPARTPGGFIILKLLDKRGGGNQVRDEVHVRHILIKPSEIRSEEETKRLAQKLYDRIEAG 309

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F +LA+    + G +L+   L       +      + + +   +G  +      +G+ 
Sbjct: 310 EDFAELAKSYSEDPGSALNGGDLNWIDPNALV-PEFRE-VMAKTPQGQLSKPFKSPYGWH 367

Query: 350 IAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396
           +  V   + + + S  + ++  A   +R  K  E+++   +++ +   
Sbjct: 368 VLEVLGRRATDSTS--QAREQQAMTVLRNRKYDEELQTWLRQIRDEAY 413



 Score = 77.7 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 91/278 (32%), Gaps = 40/278 (14%)

Query: 151 YIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
                 + L   ++        G+R ++  L+QA     +  S+                
Sbjct: 59  LEQQVLERLIVENLQLQIGERSGIRITDEELNQAIGTIAQRNSMSIEQFRAALAHDGLSY 118

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            +A             R    + +           ++I++S  E++     +  K    E
Sbjct: 119 EDA-------------RDQVRREMIISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSE 165

Query: 269 IRTVEQLVFPNQKEAD------------EAFQSLKKGKKFIQLAEEQGK---SLSDISLG 313
              +  ++ P  + A+            E +Q LK+G  F QLA  +     +L    +G
Sbjct: 166 ELHLANILIPTPESANSEAIQSAARQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMG 225

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK----- 368
                 +P       + ++A  GD T       G++I  + + +        EV      
Sbjct: 226 WRKAAQLP-PPFDRELSAMA-VGDITQPARTPGGFIILKLLDKRGGGNQVRDEVHVRHIL 283

Query: 369 ---KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
               +I ++    + ++K+ +  +  E+F  L  S  E
Sbjct: 284 IKPSEIRSEEETKRLAQKLYDRIEAGEDFAELAKSYSE 321



 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 34/312 (10%), Positives = 102/312 (32%), Gaps = 52/312 (16%)

Query: 363 SFQEVKKDIANQ-----MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           S+++ +  +  +     +R  + +E+++   + ++ FLA      ++S    + +I +P 
Sbjct: 117 SYEDARDQVRREMIISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPT 176

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
            + A  +             Q L     F +          AL  G   W +  +  P  
Sbjct: 177 PESANSEAIQSAARQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMGWRKAAQLPPPF 236

Query: 476 DRKLE------------------------------EVLTDVK--------KDWKTVKTAE 497
           DR+L                               +V  +V          + ++ +  +
Sbjct: 237 DRELSAMAVGDITQPARTPGGFIILKLLDKRGGGNQVRDEVHVRHILIKPSEIRSEEETK 296

Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
            ++ K    + +  + G++F ++ K+      +      ++  +         +V +   
Sbjct: 297 RLAQK----LYDRIEAGEDFAELAKSYSEDPGSALNGGDLNWIDPNALVPEFREVMAKTP 352

Query: 558 EMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
           +     P ++   + V +V     +       + + ++ L      + L + +  ++ + 
Sbjct: 353 QGQLSKPFKSPYGWHVLEVLGRRATDSTSQAREQQAMTVLRNRKYDEELQTWLRQIRDEA 412

Query: 615 SVTVHDNLIQRY 626
            V +     ++ 
Sbjct: 413 YVEIKLPGAEQA 424


>gi|319762261|ref|YP_004126198.1| ppic-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans BC]
 gi|330825811|ref|YP_004389114.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans K601]
 gi|317116822|gb|ADU99310.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans BC]
 gi|329311183|gb|AEB85598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans K601]
          Length = 261

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 4/134 (2%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           + +K   +++ E+QAEY+K        E +    ++   + EA     S+KKG KF  +A
Sbjct: 106 DFQKNNPVTDAEIQAEYDKFVAANAGKEYK-ASHILVAKEDEAKSIIASIKKGAKFEDIA 164

Query: 301 EEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++Q K     + G       P        +++  L K       +   FG+ +  + +++
Sbjct: 165 KKQSKDPGSGARGGDLDWANPGSYVPEFTEALVKLEKGKMTQTPVKSQFGWHVIRLDDVR 224

Query: 358 PSFTVSFQEVKKDI 371
            +      EVK  I
Sbjct: 225 DAQLPKLDEVKPQI 238


>gi|254284437|ref|ZP_04959405.1| PPIC-type PPIASE domain protein [gamma proteobacterium NOR51-B]
 gi|219680640|gb|EED36989.1| PPIC-type PPIASE domain protein [gamma proteobacterium NOR51-B]
          Length = 294

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 18/167 (10%)

Query: 237 FDVHEKEKKIEISNDEL--QAEYEKNKEKYFS-PEIRTVEQLVFPNQ----KEADEAF-- 287
           F + + ++ + + +  +  + EY   K      PE R V  ++   +    +EA +A   
Sbjct: 103 FTIAKFKEGLTVPDMSVIAREEYMARKNDIAVVPEKRKVAHILLTCEPGCDREAKKAQLK 162

Query: 288 ---QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDF 338
               S+ +G KF  LA++  +  +    G      I         +   + F+L   GD 
Sbjct: 163 DFSASIAEGAKFADLAKQYSEDFASARNGGRLGTAIAKDDGNIAFAFRKASFALENPGDL 222

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
           +P +   FGY +  +  I+PS+TV F+ ++  I   +     +E+V 
Sbjct: 223 SPPVETLFGYHLIVLEEIEPSYTVPFERLRDQIVQLLEREWTNEQVA 269



 Score = 38.0 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 8/122 (6%)

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
            E  K   K     +A G    +++++    S D       G+   G  +A         
Sbjct: 154 REAKKAQLKDFSASIAEGAKFADLAKQY---SEDFASARNGGR--LGTAIAKDDGNIAFA 208

Query: 441 F--RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
           F    F  ++P      V    G ++ V ++E  P+     E +   + +  +   T E+
Sbjct: 209 FRKASFALENPGDLSPPVETLFGYHLIV-LEEIEPSYTVPFERLRDQIVQLLEREWTNEQ 267

Query: 499 VS 500
           V+
Sbjct: 268 VA 269


>gi|294054384|ref|YP_003548042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293613717|gb|ADE53872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 330

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 105/356 (29%), Gaps = 73/356 (20%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           G+        + +         +  +  +  +     +  R R   + +++L N++    
Sbjct: 35  GNGIAAIAEGEIITVEQLRREVEPIIPRLRVEARTE-DEFRTRIDQISREVLQNMIDRII 93

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  E+ GL      +  E  +  +            F+  L  +G+  +EY +   K 
Sbjct: 94  IVQAAEEKGLLIPQSYIDQEYNQ--VLANDFGG-DRARFLEYLKFQGLTPREYRETIRKR 150

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           ++   +                       +NR             + ++ S   + +++ 
Sbjct: 151 VTVDVMRQ---------------------QNR------------KSQSEMSPERIEEFYV 177

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + K  +   E   +  I+      E                                +  
Sbjct: 178 RNKLRFYQSESMHLRQIILTPMADES-------------------------------ITL 206

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKK 335
            ++ A +    L +G  F   A +  +     S    G   +  +    L+D+ FSL + 
Sbjct: 207 LRQTAKQVMSDLSEGADFGDTARKYSQDDMRRSGGDWGWIERADL-RTELSDAAFSL-ES 264

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G+++  I       I +    +        EV+  I + +    A E  +   + L
Sbjct: 265 GNYSQPIELGGTIFILYCEEKRDEMIQPISEVRDIIEDVLVGEIAREAQERWLEEL 320


>gi|161523769|ref|YP_001578781.1| SurA domain-containing protein [Burkholderia multivorans ATCC
           17616]
 gi|189351470|ref|YP_001947098.1| peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans ATCC
           17616]
 gi|160341198|gb|ABX14284.1| SurA domain [Burkholderia multivorans ATCC 17616]
 gi|189335492|dbj|BAG44562.1| peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans ATCC
           17616]
          Length = 451

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/410 (12%), Positives = 114/410 (27%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V   ++     L  ++L+ +V     
Sbjct: 40  DEVVAVVNNDVITGRELDQRVGLISRRLQQQNAPVPPIDQ-----LRAQVLNQMVLERIQ 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D   V   + R      + N  + D + SRL  +G+    +       L
Sbjct: 95  VQKAKDDGIRVDDATVQATLQRL----AQANGMTLDQYRSRLEAQGVPWSIFTADARTEL 150

Query: 160 SRTDV---------------VGMFVGGMRPSNLLLDQAKRFY--------FENRSVDYIV 196
             + +               V  ++   R  N    Q  RF            ++     
Sbjct: 151 MLSKLREREVDSKITVSDAEVASYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTQIEAA 210

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAPEYKRISYILFDVHEKEKKI 246
                       S A   +  +   +           +++P       +      +  ++
Sbjct: 211 QKKAEALLQQATSGADFEKLAKNNSEADDAKKGGDLGFKSPSALPADVVDAAAKLRPGQV 270

Query: 247 EISNDELQAEYE---------KNKEKYFSPE--IRTVEQLVFPNQKEADE---------A 286
             +   +   +E                +P+     V  ++    +   E          
Sbjct: 271 NPTLIRVPDGFEIIRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDI 330

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  I 
Sbjct: 331 RRQIEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNAL-QDGQISQPIR 388

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 389 TEYGYHLIQVVGRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437


>gi|241763913|ref|ZP_04761956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
 gi|241366808|gb|EER61240.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
          Length = 261

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 4/135 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            + +K   +++ E+QAEY+K        E +    ++   + +A     S+KKG KF ++
Sbjct: 105 ADYQKNNTVTDAEIQAEYDKFVAANSGKEYK-ASHILVEKEADAKAIIASIKKGAKFEEI 163

Query: 300 AEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++Q K     + G       P        +++  L K       +   FG+ +  + ++
Sbjct: 164 AKKQSKDPGSGAKGGDLDWANPASYVSEFTEALIKLDKGKMTDAPVKSQFGWHVIRLDDV 223

Query: 357 KPSFTVSFQEVKKDI 371
           + +      EVK  I
Sbjct: 224 RQAQLPKLDEVKPQI 238


>gi|319941683|ref|ZP_08016006.1| hypothetical protein HMPREF9464_01225 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804804|gb|EFW01666.1| hypothetical protein HMPREF9464_01225 [Sutterella wadsworthensis
           3_1_45B]
          Length = 260

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 5/157 (3%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
             +  KK  +S+ +LQ  YE +K  Y   E   V  ++   + +A      L KG  F +
Sbjct: 102 AQDWAKKNPVSDADLQKAYEADKASYGDTEY-QVRHILVKTEDQAKNLISRLAKGADFGK 160

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355
           LA+E  +  ++ + G      +P   +    + FS  K G+     +   FG+ +  +  
Sbjct: 161 LAQEFSEDTANKAQGGLLGWVVPRSFVPAFGAAFSALKPGEVAQAPVRTQFGFHVVKLEA 220

Query: 356 IKPSFT-VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            + +    SF   K  I N +   K  +  +E  KR 
Sbjct: 221 KRKAELYPSFDSQKAVIHNALANQKVQQHFQELIKRA 257


>gi|188526979|ref|YP_001909666.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           Shi470]
 gi|188143219|gb|ACD47636.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           Shi470]
          Length = 299

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 81/232 (34%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E    +++   ++ N       + +        E  K          
Sbjct: 66  PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLNQTP-EFKAMMEAVKK------QAL 118

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KKI+I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++ + K  I   ++     E++ +  + L
Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|150020160|ref|YP_001305514.1| hypothetical protein Tmel_0255 [Thermosipho melanesiensis BI429]
 gi|149792681|gb|ABR30129.1| hypothetical protein Tmel_0255 [Thermosipho melanesiensis BI429]
          Length = 328

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 104/362 (28%), Gaps = 86/362 (23%)

Query: 40  SSTVVSVGRQKVPFSSFIN--SWKQELGMISQKIGFVVNSERARSVGLD------KKILD 91
           +STV  V  + +   +  +    ++ +  ISQ      N       G+       + IL+
Sbjct: 24  TSTVAIVNEEVITLETLNSVADVQKLMVSISQIDQTFFNILSNTEEGIKVILRYKRAILE 83

Query: 92  NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
            LV    + QF E          V   +      + +D     + F   L    +     
Sbjct: 84  QLVDKYLIVQFAEKYNARPSDEEVKQLVDEQLSNYLRDQGIDEETFNFYLEYANMGS--- 140

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
           ++ + K +    +V + +  +                           + V   A  + +
Sbjct: 141 LEDFKKRMYLNTLVNLSIENLY--------------------------KAVTKDATITVS 174

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
               ++EK  D Y  P    +  +        + ++                        
Sbjct: 175 EARDYYEKNIDKYATPTQYDLYLLKLSSDSVARDVK------------------------ 210

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI-- 329
                             +  G+ F ++A+E G          F +       L+  +  
Sbjct: 211 ----------------NRISGGESFEKVAKELGIDK------YFYEGLSEGEELSQKLWM 248

Query: 330 -FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
               A +G     I    G+ +  +  I P  +  F+EVK DI  +M  +K S    E  
Sbjct: 249 YIKNAPEGAILGPIDDKNGFYLFKILKIIPMRSKPFEEVKHDIIEEMLSSKKSTIWSEFI 308

Query: 389 KR 390
            +
Sbjct: 309 DK 310


>gi|121997812|ref|YP_001002599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halorhodospira
           halophila SL1]
 gi|121589217|gb|ABM61797.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halorhodospira
           halophila SL1]
          Length = 427

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/426 (13%), Positives = 134/426 (31%), Gaps = 61/426 (14%)

Query: 26  LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
           L+ GL     S +    V    ++ V  S      +Q      Q+      +++     L
Sbjct: 12  LLAGLPTLAASETLDRIVAVADQEVVLASELDQEIEQIRAQFFQRGQQPPPADQ-----L 66

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
            +++L+ LV         +  G++ D   +   + R        N  +       LA+EG
Sbjct: 67  REQVLERLVMQRLQMGHAQGAGIQVDDATLDAAMQRIAA----QNNMTLAQLRDALAQEG 122

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVL------- 197
           ++   + +   + ++   +    V   +  S   +++A        +++Y V        
Sbjct: 123 MDMASFREDLREQITVERLQQAVVQQEVEVSPQEIEEAVEAAAAQDNMEYRVAHIRIGTP 182

Query: 198 -------------NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
                            +   A    +      E + D   A E  +I + L        
Sbjct: 183 EGASSDDLRAAGERAGQIREQAVDGESDFATLAETFSDAATASEGGKIGWRLPGQLPSAF 242

Query: 245 KIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQLVF---------PNQ 280
              +   E               +    ++  E     E      ++            +
Sbjct: 243 ADVVDGLEPGEISEPVQAADGFHIVKLIDRRSEDAQIVEETRARHILLRPGDGVEEDDVR 302

Query: 281 KEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  D   + + +G+ F  LA    EE G   S   +G      +   S  + +  L + G
Sbjct: 303 QRLDSFRERIDEGESFEFLARQYSEEPGAEASGGDIGWTRSGQLV-ASFQERMDEL-EVG 360

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           + +      +G+ I  V + +          ++ IA Q+   K+ E +++  ++L E   
Sbjct: 361 EVSEPFRTEYGWHIVRVEDRRERDVTD-DRRRERIAQQIHERKSQEALEQWLRQLREEAY 419

Query: 397 LGTSMD 402
           +   ++
Sbjct: 420 VDYRLE 425


>gi|317179430|dbj|BAJ57218.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           F30]
          Length = 299

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 13/175 (7%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
              + +      E+ KKI+I   E+Q  Y  NK++ F  +      ++   + EA     
Sbjct: 116 QALVEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIIS 175

Query: 289 SL------KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336
            +      KK  KFI+LA       +         LG F K  +     + + F+L    
Sbjct: 176 EIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMT-PDFSKAAFALTPGD 234

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                +   FGY I ++ +     T ++ + K  I   ++     E++ +  + L
Sbjct: 235 YTKTPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|238764654|ref|ZP_04625599.1| Chaperone surA [Yersinia kristensenii ATCC 33638]
 gi|238697146|gb|EEP89918.1| Chaperone surA [Yersinia kristensenii ATCC 33638]
          Length = 424

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/404 (15%), Positives = 127/404 (31%), Gaps = 66/404 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S      +  + + +Q+ G  V         L  +IL+ L+     
Sbjct: 16  DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQEVP----DDATLRHQILERLIMDNIQ 70

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+      +   IA         N+ + D   SRLA +G+N   Y +   K +
Sbjct: 71  LQMAKKMGITISDEALDKAIADIAA----QNRMTPDQMRSRLAADGLNYDTYREQIRKEM 126

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217
             ++V        +      ++   +      S D  + L++  +P   +PS   + Q  
Sbjct: 127 LTSEVRNNEVRRRITILPQEVEALAKQVGNQTSGDTELNLSHILIPLPENPSQQQVDQ-A 185

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268
           E   +   +       +    +        +           EL + + +  +     + 
Sbjct: 186 EDVANKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSANKGDV 245

Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291
                                             ++            + +   A   +K
Sbjct: 246 VGPIRSGVGFHILKVNDIRGGDNTVSVTEVHARHILLKPSPVMTDDQARAKLAAAAADIK 305

Query: 292 KGK-KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            GK  F  +A+E     G ++    LG  S + I D +  D++  L KKG+ +  +H SF
Sbjct: 306 SGKTDFATIAKEISQDPGSAMQGGDLGWASPD-IYDPAFRDALMKL-KKGEISTPVHSSF 363

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+ +  V + +     +    K      +   K +E+ +   + 
Sbjct: 364 GWHLIQVVDTR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 406


>gi|171060801|ref|YP_001793150.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
 gi|170778246|gb|ACB36385.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
          Length = 359

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 102/351 (29%), Gaps = 79/351 (22%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
            +VG   +  + +  +    L +  +K  +      A      +++ D +V+   L    
Sbjct: 59  ATVGDTVISRADYQRA----LAVAMRKKYYHAKPPEAEFARFRREVGDEVVNRVLLLAEA 114

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
              G+  D  ++   +A                             +Y        +R  
Sbjct: 115 RRRGIVPDREQIAATVAGYDA-------------------------QYASSANWQANRDQ 149

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++   +  +  S  LL++  +                 V  + +P+  VL  +  ++   
Sbjct: 150 MLAAVLPQLE-SESLLERLGQL----------------VKRVPEPAEPVLRAYHAQHPAL 192

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           +  PE  R+S IL  V     +                      E R +           
Sbjct: 193 FTEPEQVRLSVILLKVDPSSPQAMWDAA--------------HAEGRQLH---------- 228

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS---KEYIPDVSLADSIFSLAKKGDFTP 340
               + L  G  F  LA       S  + G      +  +P+      +      G  + 
Sbjct: 229 ----RRLLAGADFGDLARLHSGDRSAAAGGQMDYAHRGMLPEAVHG--VVDALPPGGLSA 282

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            +    G  I  + + +P+   +F++V+   A   +  +A  +  E    L
Sbjct: 283 PVQLLEGVAILRLDDRRPARLRAFEQVRARAAELWQREQAQARWTELIDTL 333



 Score = 42.3 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
            + +  V     P      V L +G    +++ +  PAR R  E+V     + W+  +  
Sbjct: 265 PEAVHGVVDALPPGGLSAPVQLLEG-VAILRLDDRRPARLRAFEQVRARAAELWQREQAQ 323

Query: 497 EE 498
             
Sbjct: 324 AR 325


>gi|328542082|ref|YP_004302191.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [polymorphum gilvum SL003B-26A1]
 gi|326411832|gb|ADZ68895.1| Peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 287

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 61/147 (41%), Gaps = 6/147 (4%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ---G 304
           I+  EL+A Y+     +   E  +   ++  ++ EA E  + L +G  F +LA      G
Sbjct: 122 ITEAELKAAYDTEFAGFEGDEEISARHILVASKDEAAELIKKLDEGADFAELATAHSSDG 181

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGYVIAHVSNIKPSFTVS 363
            +     LG F++  +      ++       G+ +   +   FG+ +  V + +     S
Sbjct: 182 SAAGGGDLGYFTRGQMV--PEFEAAAFALAAGEHSKEPVESQFGWHVIKVEDKRQQAAPS 239

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
           F+EV+  +  ++     ++++ E    
Sbjct: 240 FEEVEAGLRQKLIRDIYTKRIGELKAE 266


>gi|221211271|ref|ZP_03584250.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Burkholderia multivorans CGD1]
 gi|221168632|gb|EEE01100.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Burkholderia multivorans CGD1]
          Length = 453

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/410 (12%), Positives = 114/410 (27%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V   ++     L  ++L+ +V     
Sbjct: 42  DEVVAVVNNDVITGRELDQRVGLISRRLQQQNAPVPPIDQ-----LRAQVLNQMVLERIQ 96

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D   V   + R      + N  + D + SRL  +G+    +       L
Sbjct: 97  VQKAKDDGIRVDDATVQATLQRL----AQANGMTLDQYRSRLEAQGVPWSIFTADARTEL 152

Query: 160 SRTDV---------------VGMFVGGMRPSNLLLDQAKRFY--------FENRSVDYIV 196
             + +               V  ++   R  N    Q  RF            ++     
Sbjct: 153 MLSKLREREVDSKITVSDAEVASYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTQIEAA 212

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAPEYKRISYILFDVHEKEKKI 246
                       S A   +  +   +           +++P       +      +  ++
Sbjct: 213 QKKAEALLQQATSGADFEKLAKNNSEADDAKKGGDLGFKSPSALPADVVDAAAKLRPGQV 272

Query: 247 EISNDELQAEYE---------KNKEKYFSPE--IRTVEQLVFPNQKEADE---------A 286
             +   +   +E                +P+     V  ++    +   E          
Sbjct: 273 NPTLIRVPDGFEIIRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDI 332

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  I 
Sbjct: 333 RRQIEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNAL-QDGQISQPIR 390

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 391 TEYGYHLIQVVGRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 439


>gi|257092441|ref|YP_003166082.1| SurA domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044965|gb|ACV34153.1| SurA domain protein [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 436

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/379 (14%), Positives = 117/379 (30%), Gaps = 91/379 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +            L  + ++ G  +         L++++L+ LV     
Sbjct: 34  DRIVAVVNDEVITLHELRTRLDGALAQLQRQ-GTQLPPRDV----LERQMLERLVIDKVQ 88

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR----EGINEKEYIDHY 155
            Q   D+G+                                L R      ++  ++    
Sbjct: 89  LQQARDMGVRV----------------------DDAQLEQALQRIAAGNKMSLAQFRAAL 126

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIVLNNRHVPAIADPSNAVLT 214
            K                           F  E R  +    +  R V +    S   + 
Sbjct: 127 EKDGI--------------------AFASFREEIRGEMTIARVREREVESKIFISEGEID 166

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
            +         A E   +++IL                             SPE  + EQ
Sbjct: 167 NYLAGASGQGGAVEEFNLAHILL---------------------------RSPESASPEQ 199

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFS 331
           +    + + ++  + ++KG++F QLA     +   L    LG  S + +P    A++  +
Sbjct: 200 IQ-KLRAKGEQVAERVRKGEEFAQLAAAYSDAPDGLKGGDLGWRSLDRLP-PLFAEAAAT 257

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD----IANQMRITKASEKVKED 387
           L K G+ +P++  S G+ +  +   +     +   V++     I  ++    +  + +  
Sbjct: 258 L-KVGEVSPLLRSSNGFHLIKLVAKRGGG--TLAAVQQTHARHILIKVNEVVSESEARHK 314

Query: 388 YKRLEEFLALGTSMDEISR 406
            + L E +  G S  E+++
Sbjct: 315 LEGLRERIKHGESFAELAK 333


>gi|238755738|ref|ZP_04617071.1| Chaperone surA [Yersinia ruckeri ATCC 29473]
 gi|238706030|gb|EEP98414.1| Chaperone surA [Yersinia ruckeri ATCC 29473]
          Length = 433

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 118/375 (31%), Gaps = 65/375 (17%)

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
           Q+ G  +  E      L  +IL+ L+      Q  + +G+      +   IA        
Sbjct: 54  QQAGQQIPDE----ATLRHQILERLIMDNIQLQMAQKMGITVSDEALDKAIADIAA---- 105

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FY 186
            N+ + D   SRLA EG+N   Y     K +  ++V        +      ++   +   
Sbjct: 106 QNRMTTDQMRSRLAAEGLNYSTYRAQIRKEMLTSEVRNNEVRRRVNILPQEVESLAKQIS 165

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            +      + L++  +P   +PS   +    E    N  A   K   +    +       
Sbjct: 166 AQTGDDAELNLSHILIPLPENPSQQQVDT-AEDLAKNLVAELKKGADFGKLAIANSADSQ 224

Query: 247 EISN--------DELQAEYEKNKEKYFSPE-----------------------------I 269
            +           EL   + +  +     +                              
Sbjct: 225 ALKGGQMGWGKLQELPTLFAERLKTTSKGDIVGPIRSGVGFHILKVNDIRGENKSISVTE 284

Query: 270 RTVEQLVFP---------NQKEADEAFQSLKKGK-KFIQ----LAEEQGKSLSDISLGSF 315
                ++            + +   A   +K GK  F      L+E+ G ++    LG  
Sbjct: 285 VHARHILLKPSVVMTDDQARAKLQAAANDIKNGKVTFADEAKRLSEDSGSAIQGGDLGWA 344

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           S + I D +  D++  L KKG+ +  +H SFG+ +  + + +     +    K      +
Sbjct: 345 SPD-IYDPAFRDALLKL-KKGEISAPVHSSFGWHLIQLLDTR-QVDRTDAAQKDRAYRML 401

Query: 376 RITKASEKVKEDYKR 390
              K +E+ +   + 
Sbjct: 402 FNRKFAEEAQTWMQE 416



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 75/239 (31%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
               YRA   K +       +E  +++ I   E+++  ++   +        +  ++ P 
Sbjct: 124 NYSTYRAQIRKEMLTSEVRNNEVRRRVNILPQEVESLAKQISAQTGDDAELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       +  A      LKKG  F +LA         +  G      + +  +L 
Sbjct: 184 PENPSQQQVDTAEDLAKNLVAELKKGADFGKLAIANSADSQALKGGQMGWGKLQELPTLF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
                   KGD    I    G+ I  V++I+  + ++S  EV    I  +  +    ++ 
Sbjct: 244 AERLKTTSKGDIVGPIRSGVGFHILKVNDIRGENKSISVTEVHARHILLKPSVVMTDDQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +     +  G      +   K +S D       G           P     L ++
Sbjct: 304 RAKLQAAANDIKNGK--VTFADEAKRLSEDSGSAIQGGDLGWASPDIYDPAFRDALLKL 360


>gi|261364046|ref|ZP_05976929.1| SurA/PPIASE domain protein [Neisseria mucosa ATCC 25996]
 gi|288568080|gb|EFC89640.1| SurA/PPIASE domain protein [Neisseria mucosa ATCC 25996]
          Length = 328

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 103/358 (28%), Gaps = 90/358 (25%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                     + +       + ++    I +         +     L +++L  L++ + 
Sbjct: 51  SDGIAAIADNEVITRRQLAQAVERARRTIPK-------GTQIGDNELREQVLAQLINQSL 103

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  +   ++AD+  +   IA +P           ++  S +A          +   + 
Sbjct: 104 IVQAGKRKNIQADNAEIEAVIAANPSLKTPSASIRREIADSIIA----------EKVRQQ 153

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
                         R S+  + +A     +                IA P    L Q+  
Sbjct: 154 AVMQH--------SRVSDAEVARAIEQAKQQ--------------GIALPEGEPLRQYNA 191

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           ++               +    + E     +   ++  Y                     
Sbjct: 192 QH---------------ILIKADNENAAAGAESTIRKIY--------------------- 215

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
                       + G  F  LA +    G + S  +LG F+   +      +++  L K 
Sbjct: 216 ---------AQARSGADFAGLARQYSQDGSASSGGNLGWFADGMMV-PPFEEAVHKL-KP 264

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           G  +P +   FG+ I  +++++ + T   +     I   +   KA +      + L E
Sbjct: 265 GQVSPPVRTQFGWHIIKLNDVRDAGTPE-ERQHNTIRQYLSRQKAEQAEINLLRELHE 321


>gi|221200089|ref|ZP_03573132.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Burkholderia multivorans CGD2M]
 gi|221206758|ref|ZP_03579770.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Burkholderia multivorans CGD2]
 gi|221173413|gb|EEE05848.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Burkholderia multivorans CGD2]
 gi|221180328|gb|EEE12732.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Burkholderia multivorans CGD2M]
          Length = 453

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/410 (12%), Positives = 114/410 (27%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V   ++     L  ++L+ +V     
Sbjct: 42  DEVVAVVNNDVITGRELDQRVGLISRRLQQQNAPVPPIDQ-----LRAQVLNQMVLERIQ 96

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D   V   + R      + N  + D + SRL  +G+    +       L
Sbjct: 97  VQKAKDDGIRVDDATVQATLQRL----AQANGMTLDQYRSRLEAQGVPWSIFTADARTEL 152

Query: 160 SRTDV---------------VGMFVGGMRPSNLLLDQAKRFY--------FENRSVDYIV 196
             + +               V  ++   R  N    Q  RF            ++     
Sbjct: 153 MLSKLREREVDSKITVSDAEVASYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTQIEAA 212

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAPEYKRISYILFDVHEKEKKI 246
                       S A   +  +   +           +++P       +      +  ++
Sbjct: 213 QKKAEALLQQATSGADFEKLAKNNSEADDAKKGGDLGFKSPSALPADVVDAAAKLRPGQV 272

Query: 247 EISNDELQAEYE---------KNKEKYFSPE--IRTVEQLVFPNQKEADE---------A 286
             +   +   +E                +P+     V  ++    +   E          
Sbjct: 273 NPTLIRVPDGFEIIRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDI 332

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 333 RRQIEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNAL-QDGQISQPVR 390

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 391 TEYGYHLIQVVGRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 439


>gi|241889428|ref|ZP_04776729.1| peptidylprolyl isomerase PrsA1 [Gemella haemolysans ATCC 10379]
 gi|241863971|gb|EER68352.1| peptidylprolyl isomerase PrsA1 [Gemella haemolysans ATCC 10379]
          Length = 312

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 98/297 (32%), Gaps = 87/297 (29%)

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
           E   +  L K     ++    LD++   I  ++   ++            +      D F
Sbjct: 45  ESIGASQLSKTATSMMIQKVLLDKYKNKIDQKSIDEQLQKA-------QEQYGG--KDKF 95

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
              L ++G    +Y D      ++T ++  + G                           
Sbjct: 96  EQLLKQQGFTLDKYKDGLKVKAAQTLLINDYAGT-------------------------- 129

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                      ++  L + +EK K  Y       +++IL  V  +     +S++E     
Sbjct: 130 -----------NDEKLKESYEKNKHQY------HLAHILISVKSESNPNGLSDEE----- 167

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLG 313
                                 +K+A++  + LK G  F  LA+E         +   LG
Sbjct: 168 ---------------------AKKKAEDVLKKLKDGGDFATLAKENSNDTANASNGGDLG 206

Query: 314 SFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             SKE         D+ ++L+K    + V+  SFGY I  V + K S   SF E+K 
Sbjct: 207 WSSKEDNSFVKEFKDAAYALSKD-KTSDVVKTSFGYHIIKVLDEKDS---SFDELKP 259


>gi|91215920|ref|ZP_01252889.1| PPIC-type PPIASE domain protein [Psychroflexus torquis ATCC 700755]
 gi|91185897|gb|EAS72271.1| PPIC-type PPIASE domain protein [Psychroflexus torquis ATCC 700755]
          Length = 643

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/399 (15%), Positives = 143/399 (35%), Gaps = 58/399 (14%)

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKK 335
           +++ D+ +  +K G  F  LA++        S G     F    +   +  +  F L   
Sbjct: 245 KEQIDKIYVKVKSGDDFHDLAKQYSDDTDTASKGGYVAAFGIGGLNSKTYENEAFQLENI 304

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           GD+T      FG+ I  +  ++P    SFQ++K+D+  +++ +  S+ +    K   E  
Sbjct: 305 GDYTEPFQTKFGWHIVKLIEVEP--IQSFQDIKEDLKKRLKSSSRSKLLVSKIKEDLEAR 362

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA----IPYKEQLLFRVFGKDDPLS 451
               +++E++    + ++D        +   G+ +          +++ F+ FG+     
Sbjct: 363 YE-VTINEVASSYFLKALDSTFDKMKWRFSPGENLPETYVIKVEDKEVDFKTFGEYLERQ 421

Query: 452 KDHTVALPDGSYM--------------------WVQIKESIPARDRKLEEVLTDV----- 486
           +     LP    +                     V+I +    R    EE    +     
Sbjct: 422 QRKLSKLPKHKIVIENALNDMVYNELLAHHKTQLVEIDQDFANRI---EEYKNGILIFDY 478

Query: 487 --KKDWKTVKTAEEVSSK-----ANQLVLEYSKEGKNFRDIGKNLGASLLTT-NQINRMD 538
                W+ +     +         ++ V +   EG+ +    K+    + +   +   +D
Sbjct: 479 MSTNVWEPISKDTLLQRDYYTSNQDEFVADSKIEGQLYTSASKSSIKDVRSRLKEKMTLD 538

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPI---ENGLSYV--------VFKVTNSKVGPVQEK 587
             +     D I +  S P    K       + G+S +        +      K   V E 
Sbjct: 539 TISIQLPDDVILEQVSIPKSSSKIPKALKFKEGVSKIYKHLDQYLIMNAIEVKPSFVPEF 598

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
           +K    +   + +   + +I+ L+ QY++ ++ +++++ 
Sbjct: 599 NKVSGKIISSLQEKREEQLISNLRDQYTMKINKDILEKL 637



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/430 (11%), Positives = 136/430 (31%), Gaps = 51/430 (11%)

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
           +   +++  D   + + +   Y            E++   ++  Y + +           
Sbjct: 72  IKSAYDQELDTLNSYQKEFSKYYKQIADSYISNGEVTEAMVKEAYGRTRT------EVRA 125

Query: 273 EQLVFPNQK----------EADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKE 318
             ++    K           A    +  + G+ F  LA++  +  S    + +L  F+  
Sbjct: 126 SHILLNLSKYEEDTAKVYNRALVLMKRAENGEDFGMLAKQNSEDPSAQRNEGNLNWFNTF 185

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
            +      D  + L   G+ +  +   FGY I   +  + S        K  +     + 
Sbjct: 186 KMV-YEFEDVAYKL-DVGEISKPVRSDFGYHIIKKTGERAS--------KGKLKTAHIMV 235

Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
              + +++  +++++      S D+     K  S D       G              + 
Sbjct: 236 VNKDSLRDPKEQIDKIYVKVKSGDDFHDLAKQYSDDTDTASKGGYVAAFG--IGGLNSKT 293

Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
                F  ++            G +  V++ E  P   +  +++  D+KK  K+   ++ 
Sbjct: 294 YENEAFQLENIGDYTEPFQTKFG-WHIVKLIEVEP--IQSFQDIKEDLKKRLKSSSRSKL 350

Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLL--TTNQINRMDNENKFFGYDGISQVFSGP 556
           + SK  + +    +      ++  +     L  T +++    +  +      + +V    
Sbjct: 351 LVSKIKEDLEARYEV--TINEVASSYFLKALDSTFDKMKWRFSPGENLPETYVIKVEDKE 408

Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           V+              + K+   K+            +   +N  + + ++A+ K+Q  V
Sbjct: 409 VDFKTFGEYLERQQRKLSKLPKHKI-----------VIENALNDMVYNELLAHHKTQL-V 456

Query: 617 TVHDNLIQRY 626
            +  +   R 
Sbjct: 457 EIDQDFANRI 466



 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 59/165 (35%), Gaps = 9/165 (5%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDEL--QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
           E  +   ++FD         IS D L  +  Y  N++++ +      +     ++    +
Sbjct: 467 EEYKNGILIFDYMSTNVWEPISKDTLLQRDYYTSNQDEFVADSKIEGQLYTSASKSSIKD 526

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
               LK+      ++ +    +         +  IP  S +    +L  K   + +    
Sbjct: 527 VRSRLKEKMTLDTISIQLPDDVI------LEQVSIPKSS-SKIPKALKFKEGVSKIYKHL 579

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
             Y+I +   +KPSF   F +V   I + ++  +  + +     +
Sbjct: 580 DQYLIMNAIEVKPSFVPEFNKVSGKIISSLQEKREEQLISNLRDQ 624


>gi|26987145|ref|NP_742570.1| survival protein SurA [Pseudomonas putida KT2440]
 gi|24981777|gb|AAN66034.1|AE016232_7 survival protein SurA [Pseudomonas putida KT2440]
          Length = 439

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/409 (12%), Positives = 128/409 (31%), Gaps = 65/409 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S       +    I+++ G V  +       L++++L+ L+     
Sbjct: 31  DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPTS-----ALEQQVLERLIVENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S D F + LAR+G++  +  +   + +
Sbjct: 86  LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALARDGLSFDDAREQVKREM 141

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
             + V        ++ S   +         + +  +   L N  +P     ++  + +  
Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLASDLGKMQMSEEYRLANILIPTPEAANSDDIQKAA 201

Query: 218 EKYKDNYRAPEY-------------------------KRISYILFDVHEKEKKIEISNDE 252
            K  D Y+                             ++   +  D  +    + +    
Sbjct: 202 RKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSMPVGEIT 261

Query: 253 LQAEYEKNKEKYFSPEIR-----------TVEQLVF---------PNQKEADEAFQSLKK 292
                          E R            V  ++            ++ A+  +  +K 
Sbjct: 262 QPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATEQLAERLYDRIKN 321

Query: 293 GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G+ F +LA+    + G +L+   L       +          +  ++G  T      +G+
Sbjct: 322 GEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGVVTKPFKTQYGW 379

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396
            +  V   + + +   ++ ++  A + +R  K  E+++   +++ +   
Sbjct: 380 HVLEVLGRRATDST--EQAREQQALSVLRNRKYDEELQTWLRQIRDEAY 426



 Score = 38.4 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/254 (10%), Positives = 85/254 (33%), Gaps = 19/254 (7%)

Query: 378 TKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
            KA+ KV + Y++L +    G  ++   +    +   ++                     
Sbjct: 198 QKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPD---------- 247

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKT 495
                ++            + +P+G ++ ++++E     +  L +EV         +   
Sbjct: 248 ---FAKMLSSMPVGEITQPIRIPNG-FIILKLEEKRGGSENVLRDEVHVRHILIKPSEIR 303

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
           +E  + +  + + +  K G++F ++ K+      +      ++  +         +  + 
Sbjct: 304 SEAATEQLAERLYDRIKNGEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMAN 363

Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKS 612
             + V   P +    + V +V   +     E+    + +S L      + L + +  ++ 
Sbjct: 364 AQQGVVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQALSVLRNRKYDEELQTWLRQIRD 423

Query: 613 QYSVTVHDNLIQRY 626
           +  V +      + 
Sbjct: 424 EAYVEIKLPGADQA 437


>gi|154494369|ref|ZP_02033689.1| hypothetical protein PARMER_03724 [Parabacteroides merdae ATCC
           43184]
 gi|154085813|gb|EDN84858.1| hypothetical protein PARMER_03724 [Parabacteroides merdae ATCC
           43184]
          Length = 532

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 125/397 (31%), Gaps = 64/397 (16%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF-INSWKQELGMISQKIGFVVNSE 78
           +L +  +   ++     VS  S V++V  +++P   F   + K     +S +       E
Sbjct: 10  LLVLSLVFACMTGNA-QVSVDSVVMTVAGKQIPLDEFIFIAQKNSEVNLSDRKSVNAYVE 68

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
             ++  L                  ED+GL+           ++  F  +      D + 
Sbjct: 69  LFKNFKLK-------------VAEAEDLGLD-----------KTKAFKDE-----LDSYR 99

Query: 139 SRLAREGINEKEYI--------DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
           ++L    +++K+          D Y ++L  + ++          + +    K      R
Sbjct: 100 AQLTSSYLSDKDGEEAAVRAVYDRYGEVLELSHILFRLPQRTLSKDTVPVYQKAIEAYER 159

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS- 249
                  +   V      ++     +   +      P     ++           + +  
Sbjct: 160 IQ--AGEDFAAVGKELKDADKENVGYEYVHC---LLPMQTVKAFENVAYSLPVGSVSLPV 214

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFI 297
              +     K   +  +P +  V  ++ P +K+            A+E ++  K G  F 
Sbjct: 215 RTTMGFHIIKIHSRRRNPGLVRVAHVLIPFEKDSVKFGEAETLARAEEVYRKAKDGADFA 274

Query: 298 QLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            LA+E          G     F    + +     + F+L   G+ +  +   FGY I  +
Sbjct: 275 MLAKEYSSDAGSAKRGGELPAFGVGEMVEP-FEVAAFALNTPGELSRPVKTRFGYHIIKL 333

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
              K     SF + KK  + QM   + + +    +  
Sbjct: 334 IEKK--GIPSFDDKKKAWSRQMAQGERNFEYYGAFDE 368



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 90/272 (33%), Gaps = 55/272 (20%)

Query: 250 NDELQAEYEKNKE-------KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
              ++A Y++  E        +  P  RT+ +   P  ++A EA++ ++ G+ F  +   
Sbjct: 114 EAAVRAVYDRYGEVLELSHILFRLP-QRTLSKDTVPVYQKAIEAYERIQAGEDFAAV--- 169

Query: 303 QGKSLSDISLGSFSKEYI-------PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
            GK L D    +   EY+          +  +  +SL   G  +  +  + G+ I  + +
Sbjct: 170 -GKELKDADKENVGYEYVHCLLPMQTVKAFENVAYSLP-VGSVSLPVRTTMGFHIIKIHS 227

Query: 356 IK--PSFTV------SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
            +  P           F+  K  +      T A    +E Y++ ++    G     +++ 
Sbjct: 228 RRRNPGLVRVAHVLIPFE--KDSVKFGEAETLAR--AEEVYRKAKD----GADFAMLAKE 279

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAI---PYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
                        AG   +G E+ A       E      F  + P      V    G Y 
Sbjct: 280 Y---------SSDAGSAKRGGELPAFGVGEMVEPFEVAAFALNTPGELSRPVKTRFG-YH 329

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
            +++ E         ++      K W      
Sbjct: 330 IIKLIEKK--GIPSFDDKK----KAWSRQMAQ 355


>gi|34498388|ref|NP_902603.1| signal peptide protein [Chromobacterium violaceum ATCC 12472]
 gi|34104242|gb|AAQ60601.1| probable signal peptide protein [Chromobacterium violaceum ATCC
           12472]
          Length = 260

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 96/262 (36%), Gaps = 29/262 (11%)

Query: 155 YTKMLSRTDVVGMFVGGMRP-----------SNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
             K+L +T +V  F G               S+  +D   +          +    R   
Sbjct: 1   MRKILLQTALVAAFAGSAIAVAGPSVNGQPISDARVDAVVKMMEAQ--GQNVNPQARDQI 58

Query: 204 AIADPSNAVLTQWFEKYKDNY-RAPE-------YKRISYILFDVHEKEKKIEISNDELQA 255
                +  VL Q  E  K    ++PE        + ++     + + EK   +S  +L+A
Sbjct: 59  KDQLVTAEVLRQ--EAVKKGLDKSPEFNAELQNMQAMALANRLIKDYEKANPLSEADLKA 116

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DIS 311
           EY+K        +      ++  ++ EA     +LKKGK F +LA+E+ +          
Sbjct: 117 EYDKLAASVPETKQFHARHILVKSEAEAKSVIDALKKGKSFDKLAKEKSQDPGSKANGGD 176

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS-FQEVKKD 370
           LG            ++++  LAK       +   +G+ +  + +++    V   +E++  
Sbjct: 177 LGWQEAGTFV-APFSEAMSKLAKGEVTAKPVKTEYGWHVIKLDDVRTQRNVPQLEEIRPQ 235

Query: 371 IANQMRITKASEKVKEDYKRLE 392
           +  ++   +  + V E   + +
Sbjct: 236 LTQRVMGARIEKYVAELKAKAQ 257


>gi|317010455|gb|ADU84202.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           SouthAfrica7]
          Length = 299

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%)

Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            N   D+ K    E    +++   ++ N       D +        E  K          
Sbjct: 65  PNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLDQTP-EFKAMMEAVK------RQAL 117

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290
           + +      E+ KKI+I   E+Q  Y  NK++ F  +      ++   + EA      + 
Sbjct: 118 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 177

Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                KK  KFI+LA       +         LG F K  +     + + F+L       
Sbjct: 178 KQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGTYTK 236

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +   FGY I ++ +     T ++++ K  I   ++     E++ +  + L
Sbjct: 237 TPVKTEFGYHIIYLISKDSPITYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 288


>gi|167465904|ref|ZP_02330993.1| peptidyl-prolyl cis-trans isomerase D, putative [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 353

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 25/168 (14%)

Query: 247 EISNDELQAEYEKNKEKYFSP-EIRTVEQLVF--------------PNQKEADEAFQSLK 291
           +++ DE +  Y++N  +  +  E+  V  ++                 +  A E    L+
Sbjct: 157 QVTEDETKKAYDENLAQEPNAYEVEDVSHILIGLKDQEGKDLRNKDEAKTRALEVKGKLE 216

Query: 292 KGKKFIQLAEEQGKSLSDISLG------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           KG+ F  LA+E          G       +S+          + +SL +    +  +   
Sbjct: 217 KGEDFAALAKEYSDDPGSKDKGGKYEKVDYSQMMQFVEPFKQAAWSLEEN-KISDPVETD 275

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           +GY I  V N K     ++ EVK  I +Q+   K  + ++++  +L E
Sbjct: 276 YGYHIMKVENRKK---QTYDEVKDQIRSQLSQKKMRDYIEQEVPKLIE 320


>gi|299529221|ref|ZP_07042666.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
 gi|298722844|gb|EFI63756.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
          Length = 263

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 6/155 (3%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E YK          +   LFD  +  KK  +++ E +AEY+K        E +    ++ 
Sbjct: 87  EAYKQQMEMARQTVLIRALFD--DFRKKNPVTDAEAKAEYDKFVAANGGKEYK-ASHILV 143

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAK 334
            ++  A      +K GKKF  +A+++ K     + G       P+       +++  L K
Sbjct: 144 ESEDRAKAIIAEVKAGKKFEDIAKKESKDPGSGARGGDLDWANPNNYVPEFTEALIKLKK 203

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
                  +   FG+ I  + + + +    F++VK 
Sbjct: 204 GEMTDAPVKSQFGWHIIRMDDERQAEMPKFEDVKP 238


>gi|264679103|ref|YP_003279010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
 gi|262209616|gb|ACY33714.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
          Length = 263

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 6/155 (3%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E YK          +   LFD  +  KK  +++ E +AEY+K        E +    ++ 
Sbjct: 87  EAYKQQMEMARQTVLIRALFD--DFRKKNPVTDAEAKAEYDKFVAANGGKEYK-ASHILV 143

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAK 334
            ++  A      +K GKKF  +A+++ K     + G       P+       +++  L K
Sbjct: 144 ESEDRAKAIIAEVKAGKKFEDIAKKESKDPGSGARGGDLDWANPNNYVPEFTEALIKLKK 203

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
                  +   FG+ I  + + + +    F++VK 
Sbjct: 204 GEMTDAPVKSQFGWHIIRMDDERQAEMPKFEDVKP 238


>gi|148545689|ref|YP_001265791.1| SurA domain-containing protein [Pseudomonas putida F1]
 gi|148509747|gb|ABQ76607.1| SurA N-terminal domain [Pseudomonas putida F1]
          Length = 439

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/409 (12%), Positives = 128/409 (31%), Gaps = 65/409 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S       +    I+++ G V  +       L++++L+ L+     
Sbjct: 31  DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPTS-----ALEQQVLERLIVENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S D F + LAR+G++  +  +   + +
Sbjct: 86  LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALARDGLSFDDAREQVKREM 141

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
             + V        ++ S   +         + +  +   L N  +P     ++  + +  
Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLASDLGKMQMSEEYRLANILIPTPEAANSDDIQKAA 201

Query: 218 EKYKDNYRAPEY-------------------------KRISYILFDVHEKEKKIEISNDE 252
            K  D Y+                             ++   +  D  +    + +    
Sbjct: 202 RKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSMPVGEIT 261

Query: 253 LQAEYEKNKEKYFSPEIR-----------TVEQLVF---------PNQKEADEAFQSLKK 292
                          E R            V  ++            Q+ A+  +  +K 
Sbjct: 262 QPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATQQLAERLYDRIKN 321

Query: 293 GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G+ F +LA+    + G +L+   L       +          +  ++G  T      +G+
Sbjct: 322 GEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGVVTKPFKTQYGW 379

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396
            +  V   + + +   ++ ++  A + +R  K  E+++   +++ +   
Sbjct: 380 HVLEVLGRRATDST--EQAREQQALSVLRNRKYDEELQTWLRQIRDEAY 426



 Score = 38.0 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/254 (10%), Positives = 85/254 (33%), Gaps = 19/254 (7%)

Query: 378 TKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
            KA+ KV + Y++L +    G  ++   +    +   ++                     
Sbjct: 198 QKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPD---------- 247

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKT 495
                ++            + +P+G ++ ++++E     +  L +EV         +   
Sbjct: 248 ---FAKMLSSMPVGEITQPIRIPNG-FIILKLEEKRGGSENVLRDEVHVRHILIKPSEIR 303

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
           +E  + +  + + +  K G++F ++ K+      +      ++  +         +  + 
Sbjct: 304 SEAATQQLAERLYDRIKNGEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMAN 363

Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKS 612
             + V   P +    + V +V   +     E+    + +S L      + L + +  ++ 
Sbjct: 364 AQQGVVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQALSVLRNRKYDEELQTWLRQIRD 423

Query: 613 QYSVTVHDNLIQRY 626
           +  V +      + 
Sbjct: 424 EAYVEIKLPGADQA 437


>gi|224532128|ref|ZP_03672760.1| basic membrane protein [Borrelia valaisiana VS116]
 gi|224511593|gb|EEF81999.1| basic membrane protein [Borrelia valaisiana VS116]
          Length = 336

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/374 (13%), Positives = 118/374 (31%), Gaps = 84/374 (22%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70
            K FL ++ +  +       + S + ++ V  +     + +  + F +     + +  + 
Sbjct: 1   MKSFLFLIILGTVG------INSFAQNTPVAIINLYKNEIITKTGFDSK----VDIFKKT 50

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
            G  +           K++L  L++     Q     G++     V   I     F   + 
Sbjct: 51  QGRDLTVAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN- 101

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
             + +     + ++G N  E +    + LS   +V                         
Sbjct: 102 -LTDEQIKQMIEKQGTNWGELLSSMKRSLSSQKLV------------------------- 135

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
               +         +  PS   + +++E  K  +  P+  R+S++ F   +K++   +  
Sbjct: 136 ----LKQAQPKFSEVKTPSEKEIIEYYEANKTKFVNPDIARVSHVFFSTKDKKRSDVLDQ 191

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
                   KN            +++ F      +EA +     +     ++ +   L  +
Sbjct: 192 A-------KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFL 229

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366
           S G  + + +        +F+   KGD +  I    G+ I  V+       +   +    
Sbjct: 230 SRGDQNAQNLLGADFMKEVFNF-NKGDISSPIASKEGFHIIKVTEKYAQRFLGLNDKVSP 288

Query: 367 -----VKKDIANQM 375
                VK  I N M
Sbjct: 289 TTDLIVKDAIRNNM 302


>gi|259907387|ref|YP_002647743.1| peptidyl-prolyl cis-trans isomerase SurA [Erwinia pyrifoliae
           Ep1/96]
 gi|224963009|emb|CAX54492.1| Peptidyl-prolyl cis-trans isomerase, survival protein [Erwinia
           pyrifoliae Ep1/96]
 gi|283477220|emb|CAY73127.1| survival protein SurA precursor [Erwinia pyrifoliae DSM 12163]
 gi|310765112|gb|ADP10062.1| peptidyl-prolyl cis-trans isomerase SurA [Erwinia sp. Ejp617]
          Length = 431

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/378 (14%), Positives = 122/378 (32%), Gaps = 60/378 (15%)

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
               L  +IL+ LV    L Q  +  GL+    ++   IA       + NK S D   SR
Sbjct: 62  DDKTLRHQILERLVMDNILLQKAKQAGLQISDAQLDQAIANI----AQQNKISVDQLRSR 117

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAK-RFYFENRSVDYIVLN 198
           LA +G+N   Y +   K ++  +V        +      +D    +   +N +   + ++
Sbjct: 118 LAYDGMNYASYREQIRKEMATAEVRNNEVRRRVTILPQEVDSLATQLASQNSAGTELNIS 177

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-------- 250
           +  +P   +P+   +    E       +       +    +        +          
Sbjct: 178 HILLPLPENPTQQQVDDQ-ENLAKQLVSEAKGGADFGKLAIANSADPQALKGGNMGWGRI 236

Query: 251 DELQAEYEKNKEKYFSPE-----------------------------IRTVEQLVFP--- 278
            EL + + +        +                                   ++     
Sbjct: 237 QELPSLFAQALVTAKKGDIIGPVRSGVGFHILKVNDMRGDSQSISVTEVHARHILLKPSP 296

Query: 279 ------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADS 328
                  +++  +    +K GK  F   A++  +     +LG    +S   + D +  D+
Sbjct: 297 VMTDDQARQKLQQVANEIKSGKLTFSDAAKQLSQDPGSANLGGDLGWSSAEVYDPAFRDA 356

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           +  L KKG     +H SFG+ +  + + +          KK+ A ++   +   +  + +
Sbjct: 357 LLRL-KKGQIGDPVHSSFGWHLIQLMDTRKVDKT--DAAKKERAYRLLFNRKFAEEAQTW 413

Query: 389 KRLEEFLALGTSMDEISR 406
            + E   A    +D  ++
Sbjct: 414 MQEERAAAYVKILDANAQ 431



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 104/308 (33%), Gaps = 40/308 (12%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             ++    +      G++ S+  LDQA     +   +    L +R               
Sbjct: 73  RLVMDNILLQKAKQAGLQISDAQLDQAIANIAQQNKISVDQLRSRL-------------A 119

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +      +YR    K ++      +E  +++ I   E+ +   +   +  +     +  +
Sbjct: 120 YDGMNYASYREQIRKEMATAEVRNNEVRRRVTILPQEVDSLATQLASQNSAGTELNISHI 179

Query: 276 VFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
           + P  +             A +     K G  F +LA         +  G+     I ++
Sbjct: 180 LLPLPENPTQQQVDDQENLAKQLVSEAKGGADFGKLAIANSADPQALKGGNMGWGRIQEL 239

Query: 324 S--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKK-----DIANQM 375
               A ++ + AKKGD    +    G+ I  V++++  S ++S  EV         +  M
Sbjct: 240 PSLFAQALVT-AKKGDIIGPVRSGVGFHILKVNDMRGDSQSISVTEVHARHILLKPSPVM 298

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
              +A +K+++    ++   +   +  + +++    S D    +  G           P 
Sbjct: 299 TDDQARQKLQQVANEIK---SGKLTFSDAAKQL---SQDPGSANLGGDLGWSSAEVYDPA 352

Query: 436 KEQLLFRV 443
               L R+
Sbjct: 353 FRDALLRL 360


>gi|217031935|ref|ZP_03437437.1| hypothetical protein HPB128_3g54 [Helicobacter pylori B128]
 gi|298736882|ref|YP_003729412.1| peptidylprolyl isomerase [Helicobacter pylori B8]
 gi|216946404|gb|EEC25009.1| hypothetical protein HPB128_3g54 [Helicobacter pylori B128]
 gi|298356076|emb|CBI66948.1| peptidylprolyl isomerase [Helicobacter pylori B8]
          Length = 299

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 20/212 (9%)

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +   ++ N       D +        E  K          + +      E+ KKI+I   
Sbjct: 86  IRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QALVEFWAKKQAEEVKKIQIPEK 138

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLAEEQGK 305
           E+Q  Y  NK++ F  +      ++   + EA      +      KK  KFI+LA     
Sbjct: 139 EMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKTKKEAKFIELANRDTI 198

Query: 306 SLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
             +         LG F K  +  +  + + F+L         +   FGY I ++ +    
Sbjct: 199 DPNSKNAQNGGDLGKFQKNQMA-LDFSKAAFALTPGNYTKTPVKTEFGYHIIYLISKDSP 257

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            T ++++ K  I   ++     E++ +  + L
Sbjct: 258 VTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|194332867|ref|YP_002014727.1| SurA domain [Prosthecochloris aestuarii DSM 271]
 gi|194310685|gb|ACF45080.1| SurA domain [Prosthecochloris aestuarii DSM 271]
          Length = 439

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/471 (14%), Positives = 138/471 (29%), Gaps = 98/471 (20%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           V +I + +  + F    +   L + +    V  VG + V  S                + 
Sbjct: 5   VFRILVALALLCFAGVPV---LRAATVDRIVAIVGNEIVLQSEIEQ---------QAVMT 52

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
            +   E A++  L  +ILDNLV    +        +  +   +  +         +   F
Sbjct: 53  ELQYPEMAKAKDLRGRILDNLVMQKIVLTKARLDSVNVNESDIDKQT-------DERLMF 105

Query: 133 SHDVFVSRLAREGINEKEY---IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
               F S    E    K Y          +    ++                        
Sbjct: 106 LRSRFPSIEEMEKTFSKSYAMIEKEIKDDIRNQQLIDNLR-------------------- 145

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-RAPEYKRISYILFDVHEKEKKIEI 248
                     R   +    S   +  ++ +++D     PE  +IS I+            
Sbjct: 146 ----------RQKMSGVTVSYDEVEDFYRQHRDELPSIPESVQISQIIMYPQ-------- 187

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EEQG 304
                            +PE +   + +  +        Q L +G  F ++A    ++ G
Sbjct: 188 ----------------VTPENKAKARSLIED------VQQRLLEGADFDEMARRYSQDPG 225

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            +     LG   +         ++ FSL K G+ + ++   FGY I  +   +     + 
Sbjct: 226 SAEVGGDLGYSKRGEFVKP-YEEAAFSL-KDGEISAIVESRFGYHIIQLLEKEGDRVHTR 283

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
             +       +    A EK++E      + LA   +  E++       +         + 
Sbjct: 284 HILAVFDRTTLDRDAAKEKLEEIRS---DVLAGKATFAEMASTYSEDPLSSLNGGMI-QQ 339

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLS---KDHTVALPDGS--YMWVQIKE 470
             G+ +      ++ L  V  K D      K   +  P+G   Y   ++ +
Sbjct: 340 ADGEGLFPSASLKEPLKSVVAKLDEPGAISKPMLINAPEGEPFYALFRLDK 390


>gi|222111223|ref|YP_002553487.1| ppic-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
           TPSY]
 gi|221730667|gb|ACM33487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
           TPSY]
          Length = 261

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 4/134 (2%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           + +K   +++ E+QAEY+K        E +    ++   + EA     S+KKG KF  +A
Sbjct: 106 DFQKNNAVTDAEIQAEYDKFVAANAGKEYK-ASHILVEKEDEAKAIIASIKKGGKFEDIA 164

Query: 301 EEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++Q K     + G       P        +++  L K       +   FG+ +  + +++
Sbjct: 165 KKQSKDPGSGARGGDLDWASPSSYVAEFTEALVKLEKGKMTQTPVKSQFGWHVIRLDDVR 224

Query: 358 PSFTVSFQEVKKDI 371
            +     +EVK  I
Sbjct: 225 EAQLPKLEEVKPQI 238


>gi|149927949|ref|ZP_01916199.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
           MED105]
 gi|149823388|gb|EDM82621.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
           MED105]
          Length = 456

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 62/420 (14%), Positives = 131/420 (31%), Gaps = 66/420 (15%)

Query: 29  GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88
           G S+   + +    V  V    +  S       +++ +I +++     +     + L K+
Sbjct: 42  GASNGSGAAAIDGIVAVVNTDIITRSEL----NRQVALIERQMSRR-GAPLPDRIELRKQ 96

Query: 89  ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
           +LD +V      Q  E++G+  +  ++   +AR        N  S + F++RL  EG++ 
Sbjct: 97  VLDRMVMDRAQLQKAEEVGIRIEEAQIEAAMARV----ADQNGLSLEDFLARLQEEGVSP 152

Query: 149 KEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFE------NRSVDYIVL---- 197
             + +     ++   +        ++ S+  +        +         V+++ L    
Sbjct: 153 ARFREEVRSEITLGRLREREVEARIQVSDAEIQNYLAARTKGGAAPNQPEVNWVQLLVKA 212

Query: 198 -------NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK-----RISYILFDVHEKEKK 245
                           +     L             PE       ++ +  FD       
Sbjct: 213 PSDASGATLNQARGKVEAIEKALKDGKTVEAIVQTNPELAIDGTGQMGWSGFDAVPTLFS 272

Query: 246 IEISNDELQAEYEKNKEK----YFSPEIR--------------TVEQLVF---PNQKEAD 284
             +S  +L A                E R                  ++    P+  EA+
Sbjct: 273 EFLSKAQLNAVQTIRSPNGFHVLKVLERRESGAALDSTPVTQTRARHILIRPGPDITEAE 332

Query: 285 E------AFQSLKKGK-KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
                  A + L+ G   F  LA+   + G +     LG               +  L  
Sbjct: 333 ARRRLNFALEQLQGGAATFDTLAKRYSQDGSASKGGDLGWLYPGDTV-PEFEREMNQLG- 390

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G  +PV    FG+ I  V   +     S +  ++     +R  K+ E  +E  ++L + 
Sbjct: 391 IGGVSPVFQSRFGFHIIQVVERR-QQAASEERQRQAARQAIRANKSEESYQEWLRQLRDA 449


>gi|78188012|ref|YP_378350.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium
           chlorochromatii CaD3]
 gi|78170211|gb|ABB27307.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium
           chlorochromatii CaD3]
          Length = 438

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/429 (12%), Positives = 127/429 (29%), Gaps = 85/429 (19%)

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           ++ ++   +  +      + A+   + + IL  +V    L        +  +  +V    
Sbjct: 42  FQSDINRRAAMLRAQY-PDLAKEQSVPRNILQGMVEQKLLVTKARLDSVTVESAQVDAT- 99

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
                      +F      +   + G+      +   + L+   +               
Sbjct: 100 -TLERLRQIVARFPTK--QAMERQLGMTLPALRESIREELTNQQLADKLR---------- 146

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                               R   A+A  +   +  ++   +                 +
Sbjct: 147 --------------------RKKTALASVTYDEVMAFYRDNRGQ---------------I 171

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
              ++++ +S        +  K    +PE R                 Q L+ G  F +L
Sbjct: 172 APADEQVSVS--------QIIKYAAVTPESRK------EAAAVMQSIQQELQAGADFGEL 217

Query: 300 A----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A    ++ G + S   LG   K  +         F+L K+G+ + V+   +G  +  + N
Sbjct: 218 ARKYSQDPGSATSGGDLGFVRKGQLV-ARFEQVAFAL-KEGEVSEVVETRYGLHLIQMLN 275

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKE----DYKRLEEFLALGTSMDEISRRE--- 408
              +       V+  +    R+ ++++  KE         E  ++   S  + ++R    
Sbjct: 276 RDDNSI----HVRHILR---RMERSTDDFKEANSTLASAYESVVSGKESFADAAKRLSDD 328

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAI-PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
            + +     +  AG   +   +  + P    LL  +   D    +       +  Y   +
Sbjct: 329 DVSAARGGQLVAAGASRQTVPLNKLFPQMRSLLGALKVGDVSRPQLIEPPQGEPFYAIFK 388

Query: 468 IKESIPARD 476
           + E IPA  
Sbjct: 389 LNERIPAHP 397


>gi|326330421|ref|ZP_08196729.1| LigA [Nocardioidaceae bacterium Broad-1]
 gi|325951696|gb|EGD43728.1| LigA [Nocardioidaceae bacterium Broad-1]
          Length = 345

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 4/139 (2%)

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
           +  YE + +++ +PE R +  +V    K+A    Q  +KG+ F  LA       +    G
Sbjct: 178 RDYYEAHPDRFMTPEGRELRNIVVRTDKDAQAVVQRARKGEDFAALARANSLDDATRDQG 237

Query: 314 ---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                          A + F  A+ G     +   FG+ +  V  I P    +F +V+  
Sbjct: 238 GALGVVPASSLAGDYAKAAFG-ARSGAVFGPVRTQFGWNVGQVVRIVPGKEPTFDQVEDQ 296

Query: 371 IANQMRITKASEKVKEDYK 389
             + +R  +A E  ++  +
Sbjct: 297 ALDVVRSERALETWRDWLE 315


>gi|109946965|ref|YP_664193.1| peptidyl-prolyl cis-trans isomerase [Helicobacter acinonychis str.
           Sheeba]
 gi|109714186|emb|CAJ99194.1| peptidyl-prolyl cis-trans isomerase [Helicobacter acinonychis str.
           Sheeba]
          Length = 298

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 21/228 (9%)

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           + L ++ K+   E  ++  +++ N       D +        +  K          + + 
Sbjct: 68  DKLKEEEKKALVEQ-AIRTVLVENEAKTEKLDSTP-EFKAMIDAVKK------QALVEFW 119

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--- 292
                E+ KK++I   E+Q  Y  NKE+ F  +      ++  ++ EA      + K   
Sbjct: 120 AKKQAEQVKKVKIPEKEMQDFYNANKEQIFVKQEAHARHILVKSEDEAKRIISEIDKQPK 179

Query: 293 ---GKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                KFI+LA       +         LG F K  +     + + F+L         I 
Sbjct: 180 TKREAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGNYTKTPIK 238

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             FGY I ++ +     T ++++ K  I   ++     E++ +  ++L
Sbjct: 239 TEFGYHIIYLISKDNPVTYTYEQAKPTIKGMLQEKLFQERMNQKIEQL 286


>gi|42521666|ref|NP_967046.1| survival protein SurA precursor [Bdellovibrio bacteriovorus HD100]
 gi|39574196|emb|CAE77700.1| survival protein SurA precursor [Bdellovibrio bacteriovorus HD100]
          Length = 307

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 117/358 (32%), Gaps = 73/358 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
             TV  V  + V  S F +  K+           + +      +G  K  LD L++   L
Sbjct: 13  EKTVAIVNSELVLESDFKDLVKRIPKQGMVDESLLFDKPATSLIGNRKAQLDYLINEKIL 72

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
              I+ + L   + RV  E+        + N+ S       + ++G++  +Y       +
Sbjct: 73  QSEIKRLNLAVTNDRVESELKEM----ARKNQVSEAELAKVIQQQGVSMDDYRRFLKDSI 128

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            +  ++                          +  + ++              L ++ + 
Sbjct: 129 EKRSLMDA----------------------EIISKLRIS----------DEDALNEYLKT 156

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
             +N  + +   +S+I F+  +   +  I                               
Sbjct: 157 NPNNRPSIDEFSVSHIFFNPKKGGAEASI------------------------------- 185

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336
            K A+     L+ G+ F  LA++  +  +     +LG+F K       + ++I SL K  
Sbjct: 186 -KRAETVLGKLRSGENFENLAQQFSEDPNFSTGGALGTF-KSGEFLPEIEEAISSL-KVN 242

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           + TP++    G+ I  ++  K +    F+  K  I  Q+       ++K   +   + 
Sbjct: 243 ETTPIVKSRMGFHIVKLTGKKLTTDPKFERAKDKIKAQLLENSFKRQLKNWLQTKRDE 300


>gi|77461354|ref|YP_350861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens Pf0-1]
 gi|121956432|sp|Q3K5T4|SURA_PSEPF RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|77385357|gb|ABA76870.1| putative chaperone [Pseudomonas fluorescens Pf0-1]
          Length = 426

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/424 (10%), Positives = 136/424 (32%), Gaps = 60/424 (14%)

Query: 22  FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
            +  L  G +      S    V  V    V  S       +    I+++ G +       
Sbjct: 1   MLGALFLGTAANAAVQSIDRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGLPPPGV-- 58

Query: 82  SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
              LD+++L+ L+      Q  E  G+      +   +        + N  + + F   L
Sbjct: 59  ---LDQQVLERLIVENLQLQIGERSGIRITDEELNQAVGTI----AQRNNMTPEQFRIAL 111

Query: 142 AREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNN 199
           +R+G++ ++  +   + +  + V        ++ S   +         + +  + + L N
Sbjct: 112 SRDGLSYEDAREQIRREMVISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLAN 171

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEY-------------------------KRISY 234
             +P     ++  +     K  + Y+  +                          ++ + 
Sbjct: 172 ILIPTPESANSEAIQSAARKAMEVYQQLKQGADFGQMAVANSASDNALEGGDMGWRKAAQ 231

Query: 235 ILFDVHEKEKKIEISNDE----------LQAEYEKNKEKYFSPEIRTVEQLVFP------ 278
           +      +   +   +            +    EK   +    +   V  ++        
Sbjct: 232 LPPPFDRELSSMATGDITQPARTPGGFIILKLLEKRGGESQMRDEVHVRHILVKPSPVRD 291

Query: 279 ---NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLA 333
               ++ A   +  ++ G+ F +LA++  +       G       P+  + +  ++ + +
Sbjct: 292 EAKTKELAQSLYNRIEAGEDFAELAKKYSEDPGSALNGGDLNWIDPNALVPEFRAVMAKS 351

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLE 392
            +G  +      +G+ +  V   + + +   ++ ++  A   +R  K  E+++   +++ 
Sbjct: 352 PQGQLSKPFQTQYGWHVLEVLGRRATDST--EQAREQQAMTVLRNRKYDEELQTWLRQIR 409

Query: 393 EFLA 396
           +   
Sbjct: 410 DEAY 413



 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 18/196 (9%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD---- 284
            + +           ++I++S  E++     +  K    E   +  ++ P  + A+    
Sbjct: 126 RREMVISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPESANSEAI 185

Query: 285 --------EAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLA 333
                   E +Q LK+G  F Q+A        +L    +G      +P       + S+A
Sbjct: 186 QSAARKAMEVYQQLKQGADFGQMAVANSASDNALEGGDMGWRKAAQLP-PPFDRELSSMA 244

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLE 392
             GD T       G++I  +   +   +    EV    I  +    +   K KE  + L 
Sbjct: 245 -TGDITQPARTPGGFIILKLLEKRGGESQMRDEVHVRHILVKPSPVRDEAKTKELAQSLY 303

Query: 393 EFLALGTSMDEISRRE 408
             +  G    E++++ 
Sbjct: 304 NRIEAGEDFAELAKKY 319



 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 99/308 (32%), Gaps = 44/308 (14%)

Query: 363 SFQEVKKDIANQ-----MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           S+++ ++ I  +     +R  + +E+++   + ++ FLA      ++S    + +I +P 
Sbjct: 117 SYEDAREQIRREMVISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPT 176

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
            + A  +             Q L     FG+    +     AL  G   W +  +  P  
Sbjct: 177 PESANSEAIQSAARKAMEVYQQLKQGADFGQMAVANSASDNALEGGDMGWRKAAQLPPPF 236

Query: 476 DRKLE------------------------------EVLTDVKKDWKTVK----TAEEVSS 501
           DR+L                               ++  +V      VK      E  + 
Sbjct: 237 DRELSSMATGDITQPARTPGGFIILKLLEKRGGESQMRDEVHVRHILVKPSPVRDEAKTK 296

Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
           +  Q +    + G++F ++ K       +      ++  +          V +   +   
Sbjct: 297 ELAQSLYNRIEAGEDFAELAKKYSEDPGSALNGGDLNWIDPNALVPEFRAVMAKSPQGQL 356

Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
             P +    + V +V   +     E+    + ++ L      + L + +  ++ +  V +
Sbjct: 357 SKPFQTQYGWHVLEVLGRRATDSTEQAREQQAMTVLRNRKYDEELQTWLRQIRDEAYVEI 416

Query: 619 HDNLIQRY 626
                 + 
Sbjct: 417 KLPGADQA 424


>gi|115351951|ref|YP_773790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
 gi|115281939|gb|ABI87456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
          Length = 260

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               KK + ++ E++A Y++  +         +  ++  ++++A +    +K G KF  L
Sbjct: 103 ESFLKKNQPTDAEVKARYDELVKGAGGNREYHLHHILVESEQQAKDLIAKIKGGAKFEDL 162

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           A++  K       G       P   + +  +     +KG  T   +   FG+ I    +I
Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRADDI 222

Query: 357 KPSFTVSFQEVK 368
           +      F +VK
Sbjct: 223 RDVAPPPFDQVK 234


>gi|57505869|ref|ZP_00371794.1| peptidyl-prolyl cis-trans isomerase, putative [Campylobacter
           upsaliensis RM3195]
 gi|57015899|gb|EAL52688.1| peptidyl-prolyl cis-trans isomerase, putative [Campylobacter
           upsaliensis RM3195]
          Length = 273

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 72/162 (44%), Gaps = 11/162 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK---- 295
           ++  + I++   +++  YEKNKE++  P     + ++  N++EA      LK  K     
Sbjct: 104 NKIMQDIKVDATKVKEAYEKNKEQFVKPARVKAKHILVTNEQEAKNIINELKGLKDKELE 163

Query: 296 --FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
             F ++A     + G + +   LG F +  +      D+ FSL K       +  +FGY 
Sbjct: 164 KKFTEIARTKSIDTGSAANGGDLGWFDESTMVKP-FTDATFSLKKGEITKTPVKTNFGYH 222

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           I    + +    V+F++ K  I N+ +  +  +++    + L
Sbjct: 223 IILKQDSRAKEQVAFKDAKMGIENRFKFEEFQKRIGLKGQEL 264


>gi|237749066|ref|ZP_04579546.1| chaperone SurA [Oxalobacter formigenes OXCC13]
 gi|229380428|gb|EEO30519.1| chaperone SurA [Oxalobacter formigenes OXCC13]
          Length = 459

 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 64/489 (13%), Positives = 143/489 (29%), Gaps = 114/489 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S    V    +               + Q+     N          K++L++++     
Sbjct: 45  DSIAAIVNSDVITKGELNERVTLVEAQLKQQ-----NIALPPRTEFQKQVLEHMIVERAQ 99

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D+GL  D  ++   IA       + N  S   F  +  + G   +++ +   + +
Sbjct: 100 LQLAKDMGLRVDDTQLDRTIALM----AEQNHMSLAQFKRQTEQNGTPFEKFREKVREEI 155

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           + +                                  L +R V      ++A +      
Sbjct: 156 TMS---------------------------------RLRDREVVNKIQINDAEVDNLLGA 182

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                + PE  R+ +IL  + E     +I+    +                         
Sbjct: 183 D-SQLQMPEQLRLGHILIRIPENASPEQIAEKRAR------------------------- 216

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
              A++    LK G  F Q A     +   LS   +G  S + +P  S  D++  + K G
Sbjct: 217 ---AEKVLDVLKSGGDFQQTAASYSDADEGLSGGDIGWRSTDRLPK-SFVDALAGV-KPG 271

Query: 337 DFTPVIHGSFGYVIAHVSNIKP--SFTVSFQEVKK--------------DIANQMRITKA 380
           + T +I    G+ I  V + +   +   S                     +   +   +A
Sbjct: 272 NVTGIIKSPNGFHILKVLDRRKMTNGAESVASASDKNTVQQIHARHILIKVNQLVSADEA 331

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
             K+ +  +R+   +    + +E+++       +       G          +P  E+ +
Sbjct: 332 KRKLIDLRQRI---INKSATFEELAKTYS----NDGSASRGGDLGWIYPGDTVPEFEKAM 384

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
             +     P      +    G ++            + L++   DV  + K +   + + 
Sbjct: 385 VAL----KPGEISEPIETQFGFHL-----------IQVLDKKTDDVSAERKRIAAKQALR 429

Query: 501 SKANQLVLE 509
            +      E
Sbjct: 430 ERKVAEATE 438



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 16/152 (10%)

Query: 265 FSPEIRTVEQLVFPNQK--EADEAFQSL--------KKGKKFIQLAEEQGKSLS---DIS 311
            + +      ++    +   ADEA + L         K   F +LA+      S      
Sbjct: 308 NTVQQIHARHILIKVNQLVSADEAKRKLIDLRQRIINKSATFEELAKTYSNDGSASRGGD 367

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           LG              ++ +L K G+ +  I   FG+ +  V + K     S +  +   
Sbjct: 368 LGWIYPGDTV-PEFEKAMVAL-KPGEISEPIETQFGFHLIQVLDKKTDDV-SAERKRIAA 424

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
              +R  K +E  +E  ++L +   +   +DE
Sbjct: 425 KQALRERKVAEATEEWLRQLRDKAYVEYRLDE 456


>gi|224534854|ref|ZP_03675423.1| basic membrane protein [Borrelia spielmanii A14S]
 gi|224513794|gb|EEF84119.1| basic membrane protein [Borrelia spielmanii A14S]
          Length = 336

 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/374 (13%), Positives = 121/374 (32%), Gaps = 84/374 (22%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70
            K FL ++ +  +       + S + ++ V  +     + +  +SF +     + +  + 
Sbjct: 1   MKSFLFLVILGTVG------INSFAQNTPVAIINLYKNEIITKTSFDSK----VDIFKKT 50

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
            G  + +         K++L  L++     Q     G++     V   I     F   + 
Sbjct: 51  QGRDLTTAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN- 101

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
            F+ +     + ++G N  E +    + LS   ++                      + R
Sbjct: 102 -FTDEQIKQMIEKQGTNWGELLSSMKRSLSSQKLILK------------------QAQPR 142

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
                         +  PS   + +++E  K  +  P+  R+S++ F   +K++   +  
Sbjct: 143 -----------FSEVKTPSEKEIIEYYEANKTKFVNPDISRVSHVFFSTKDKKRSDVLDQ 191

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
                   KN            +++ F      +EA +     +     ++ +   L  +
Sbjct: 192 A-------KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFL 229

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366
           S    + + +        +F+   KGD +  I    G+ I  V+       +   +    
Sbjct: 230 SRDDQNAQNLLGSDFIKEVFNF-NKGDISSPIASKEGFHIVKVTEKYAQRFLGLNDKVSP 288

Query: 367 -----VKKDIANQM 375
                VK  I N M
Sbjct: 289 TIDLIVKDAIRNNM 302


>gi|307132630|ref|YP_003884646.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Dickeya dadantii
           3937]
 gi|306530159|gb|ADN00090.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Dickeya dadantii
           3937]
          Length = 430

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 133/403 (33%), Gaps = 65/403 (16%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           + + +V    V   S INS  Q + + +Q+ G  +         L  +IL+ L+    + 
Sbjct: 26  NKIAAVVDNSVVLESDINSLLQSVKLNAQEAGQQLP----DDATLRHQILERLIMDNIIL 81

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q  + +G++    ++   IA         N+ S D   SRLA EG++   Y     K + 
Sbjct: 82  QMAQKMGVQVTDEQLDRSIANIAA----QNRMSVDQLRSRLAAEGVSFDTYRSQIRKDMI 137

Query: 161 RTDVVGM-FVGGMRPSNLLLDQAK-RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
             +V        +      +D    +   +  S   + L+   +P   +P+   + +  E
Sbjct: 138 IAEVRNSEVRRRVTVLPQEVDSLAQQIASQGASGPEVNLSQILIPLPENPTQDQVDK-AE 196

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEIS--------NDELQAEYEKN---------- 260
              +       +   +    +        +           EL + + +           
Sbjct: 197 SLANRLVKEASQGADFGKLAITYSADPQALKGGQMGWGRPQELPSLFAERLTNPQKGQVI 256

Query: 261 -------------------KEKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKK 292
                               ++  S        ++            +   ++    +K 
Sbjct: 257 GPIRSGVGFHILRVNDTRGGDQSVSVTEVHARHILLRTSVVMNDAQARARLEDIASQIKS 316

Query: 293 GK-KFI----QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           GK  F     QL+++ G +     LG  S   + D S  D++  L KKG+ +  +H SFG
Sbjct: 317 GKLSFTNAAKQLSQDPGTANQGGDLGW-SSPDMYDPSFRDALTQL-KKGEISAPVHSSFG 374

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           + +  + + +     +    K      +   K +E+ +   + 
Sbjct: 375 WHLIQLLDTR-QVDKTDAAQKDRAYRMLFNRKFAEEAQTWMQE 416


>gi|327402945|ref|YP_004343783.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
           DSM 16823]
 gi|327318453|gb|AEA42945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
           DSM 16823]
          Length = 651

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 87/265 (32%), Gaps = 38/265 (14%)

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD------------EAFQSLKKGKKFIQLA 300
           +   YE+ K             ++    + A                + ++ G+ F  +A
Sbjct: 110 VAQAYERMKN------EVHAAHILVKVVENASPEDTLAAYNRILAIKKRIENGEDFATVA 163

Query: 301 E------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +      +   + +   LG F+   +      ++ + + + G  +  I   FGY I  V 
Sbjct: 164 KGKNGSDDPSAARNGGDLGYFTAFQMV-YQFEEAAY-MTQVGKISNPIRTKFGYHILKVI 221

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE---FLALGTSMDEISRREKIV 411
           +I+P+           I          E++ +  K+++E    L  G S ++++      
Sbjct: 222 DIRPARGT---MKAAHIMVATGKDAGQEELDDARKKVDEIYSKLQNGESFEKLAGEFSDD 278

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
           +              G     +P  E+  F +    D       V    G ++  ++ E 
Sbjct: 279 AQTAEKGGELPLFGTGTTTRMVPEFEEAAFALTANGDI---SKPVQTAFGFHIIKRL-EL 334

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTA 496
            P   R  +E+  +++      + A
Sbjct: 335 TP--LRSFDELKKEIQSKVNKDERA 357



 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 21/141 (14%)

Query: 271 TVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---- 314
               ++    K+A            DE +  L+ G+ F +LA E          G     
Sbjct: 231 KAAHIMVATGKDAGQEELDDARKKVDEIYSKLQNGESFEKLAGEFSDDAQTAEKGGELPL 290

Query: 315 --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                         ++ F+L   GD +  +  +FG+ I     + P    SF E+KK+I 
Sbjct: 291 FGTGTTTRMVPEFEEAAFALTANGDISKPVQTAFGFHIIKRLELTP--LRSFDELKKEIQ 348

Query: 373 NQM-RITKASEKVKEDYKRLE 392
           +++ +  +A        ++L+
Sbjct: 349 SKVNKDERAIVTQNSFIQKLK 369


>gi|161612428|ref|YP_001586393.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161361792|gb|ABX65560.1| hypothetical protein SPAB_00117 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 428

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 117/371 (31%), Gaps = 61/371 (16%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENR 190
           + D   SRLA +G+N   Y +   K +  ++V        +      +D   +    +N 
Sbjct: 110 TMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQND 169

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIEIS 249
           +   + L++  +    +P++  +     + +      E +    +    +     +  + 
Sbjct: 170 ASTELNLSHILIALPENPTSEQVND--AQRQAENIVEEARNGADFGKLAITYSADQQALK 227

Query: 250 N--------DELQAEYEKNKEKYFSPE-----------------------------IRTV 272
                     EL   + +        +                                 
Sbjct: 228 GGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHA 287

Query: 273 EQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEY 319
             ++       N ++A    +E    +K GK  F   A+E  +     + G    ++   
Sbjct: 288 RHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPD 347

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           I D +  D++  L K G  +  +H SFG+ +  + + +     +    K      +   K
Sbjct: 348 IFDPAFRDALTKLHK-GQISAPVHSSFGWHLIELLDTRK-VDKTDAAQKDRAYRMLMNRK 405

Query: 380 ASEKVKEDYKR 390
            SE+     + 
Sbjct: 406 FSEEAATWMQE 416



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
               YR    K +       +E  ++I +   E+ A  ++   +  +     +  ++   
Sbjct: 124 NYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIAL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       Q++A+   +  + G  F +LA         +  G      I +   + 
Sbjct: 184 PENPTSEQVNDAQRQAENIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S ++S  EV    I  +       ++ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   + +   +  G +    +   K  S D    +  G           P     L ++
Sbjct: 304 RLKLEEIAADIKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 360


>gi|157736637|ref|YP_001489320.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri RM4018]
 gi|157698491|gb|ABV66651.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri RM4018]
          Length = 269

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 8/155 (5%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG----KKFIQL 299
            KI+++  + +  YEKNKEK+  PE      ++   + EA +    L K     +KF +L
Sbjct: 107 DKIKVTEADKKDFYEKNKEKFVEPETFEASHILVKTEAEAKDIISQLDKAPNKVEKFKEL 166

Query: 300 AE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           ++   +   + +  +LG F+ E +       ++ +LAK       +   FGY + ++ + 
Sbjct: 167 SKKSLDTASAKNGGALGRFAVEQMV-PEFGSAVKALAKGTYSKTPVKTQFGYHVIYLKDK 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            PS T ++ EV+K+I   +     ++K+KE  + L
Sbjct: 226 FPSKTFAYTEVEKNINQVLIGNALNKKIKELVEDL 260


>gi|217033999|ref|ZP_03439421.1| hypothetical protein HP9810_891g3 [Helicobacter pylori 98-10]
 gi|216943507|gb|EEC22958.1| hypothetical protein HP9810_891g3 [Helicobacter pylori 98-10]
          Length = 299

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 13/175 (7%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
              + +      E+ KKI+I   E+Q  Y  NK++ F  +      ++   + EA     
Sbjct: 116 QALVEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIIS 175

Query: 289 SL------KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336
            +      KK  KFI+LA       +         LG F K  +     + + F+L    
Sbjct: 176 EIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGD 234

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                +   FGY I ++ +     T ++ + K  I   ++     E++ +  + L
Sbjct: 235 YTKIPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|332673018|gb|AEE69835.1| cell binding factor 2 [Helicobacter pylori 83]
          Length = 299

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 13/175 (7%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
              + +      E+ KK++I   E+Q  Y  NK++ F  +      ++   + EA     
Sbjct: 116 QALVEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIIS 175

Query: 289 SL------KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336
            +      KK  KFI+LA       +         LG F K  +     + + F+L    
Sbjct: 176 EIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGD 234

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                +   FGY I ++ +     T ++ + K  I   ++     E++ +  + L
Sbjct: 235 YTKTPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQRIEEL 289


>gi|121956435|sp|Q88QT4|SURA_PSEPK RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 427

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/409 (12%), Positives = 128/409 (31%), Gaps = 65/409 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S       +    I+++ G V  +       L++++L+ L+     
Sbjct: 19  DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPTS-----ALEQQVLERLIVENLQ 73

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S D F + LAR+G++  +  +   + +
Sbjct: 74  LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALARDGLSFDDAREQVKREM 129

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
             + V        ++ S   +         + +  +   L N  +P     ++  + +  
Sbjct: 130 IISRVRQRRVAERIQVSEQEVKNFLASDLGKMQMSEEYRLANILIPTPEAANSDDIQKAA 189

Query: 218 EKYKDNYRAPEY-------------------------KRISYILFDVHEKEKKIEISNDE 252
            K  D Y+                             ++   +  D  +    + +    
Sbjct: 190 RKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSMPVGEIT 249

Query: 253 LQAEYEKNKEKYFSPEIR-----------TVEQLVF---------PNQKEADEAFQSLKK 292
                          E R            V  ++            ++ A+  +  +K 
Sbjct: 250 QPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATEQLAERLYDRIKN 309

Query: 293 GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G+ F +LA+    + G +L+   L       +          +  ++G  T      +G+
Sbjct: 310 GEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGVVTKPFKTQYGW 367

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396
            +  V   + + +   ++ ++  A + +R  K  E+++   +++ +   
Sbjct: 368 HVLEVLGRRATDST--EQAREQQALSVLRNRKYDEELQTWLRQIRDEAY 414



 Score = 38.4 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/254 (10%), Positives = 85/254 (33%), Gaps = 19/254 (7%)

Query: 378 TKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
            KA+ KV + Y++L +    G  ++   +    +   ++                     
Sbjct: 186 QKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPD---------- 235

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKT 495
                ++            + +P+G ++ ++++E     +  L +EV         +   
Sbjct: 236 ---FAKMLSSMPVGEITQPIRIPNG-FIILKLEEKRGGSENVLRDEVHVRHILIKPSEIR 291

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
           +E  + +  + + +  K G++F ++ K+      +      ++  +         +  + 
Sbjct: 292 SEAATEQLAERLYDRIKNGEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMAN 351

Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKS 612
             + V   P +    + V +V   +     E+    + +S L      + L + +  ++ 
Sbjct: 352 AQQGVVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQALSVLRNRKYDEELQTWLRQIRD 411

Query: 613 QYSVTVHDNLIQRY 626
           +  V +      + 
Sbjct: 412 EAYVEIKLPGADQA 425


>gi|226946688|ref|YP_002801761.1| peptidyl-prolyl cis-trans isomerase SurA [Azotobacter vinelandii
           DJ]
 gi|226721615|gb|ACO80786.1| Peptidyl-prolyl cis-trans isomerase SurA [Azotobacter vinelandii
           DJ]
          Length = 432

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/413 (12%), Positives = 133/413 (32%), Gaps = 64/413 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  +    V  +      + E+     K G  +         L  ++L+ L+  +  
Sbjct: 33  DRIVAIIDNDVVMQTQLDRRLR-EVEQTIAKRGAQLPPRD----QLVSQVLERLILESIQ 87

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q     G+      +   +A       + N  + + F + LAR+G++  E  +   + +
Sbjct: 88  LQMGSRAGIRIGDEELAQAMATI----AQRNGLTLEQFQAALARDGLSFDEAREQVRREM 143

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAK-------RFYFENRSVDY-IVLNNRHVPAIADPSN 210
             + V    V   ++ S+  +           +   E R  +  I L +   P     + 
Sbjct: 144 IISRVRQRVVADRIQISDHEVQNFLASDLGKLQLSEEFRLANITIPLPDGAPPEQIQAAE 203

Query: 211 AVLTQWFEKYKD--NY-----------RAPEYKRISYILFDVHEKEKKIEISND------ 251
             + + + +  D  ++            A E   I +             +S        
Sbjct: 204 QQVLEIYRQLSDGADFAQLAITRSAGETALEGGEIGWRRAAQLPPPFDNLVSQLPVGGVT 263

Query: 252 ---------ELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
                     +    EK        +   V  ++            ++  +   + +  G
Sbjct: 264 EPVRTPGGYIIIKLLEKRGGSAQIRDEVHVRHILIKPSEIRTDIDARRLIERIHERILNG 323

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F +LA+    + G +L+   L       +      + + +    G+ +P     FG+ 
Sbjct: 324 EDFAELAKSFSEDPGSALNGGDLNWIDPNALV-PEFRE-MMAKTPAGELSPPFKSPFGWH 381

Query: 350 IAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +  V   + + + +  +V++  A N +R  K  E+++   +++ +   + T +
Sbjct: 382 VLEVLGRRATDSST--QVREQQAMNVLRNRKYDEELQSWLRQIRDEAYVETKL 432



 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 77/271 (28%), Gaps = 38/271 (14%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             +L    +      G+R  +  L QA     +   +                  A    
Sbjct: 80  RLILESIQLQMGSRAGIRIGDEELAQAMATIAQRNGLTLEQFQAALARDGLSFDEA---- 135

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
                    R    + +            +I+IS+ E+Q     +  K    E   +  +
Sbjct: 136 ---------REQVRREMIISRVRQRVVADRIQISDHEVQNFLASDLGKLQLSEEFRLANI 186

Query: 276 VFPNQKEAD------------EAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYI 320
             P    A             E ++ L  G  F QLA  +     +L    +G      +
Sbjct: 187 TIPLPDGAPPEQIQAAEQQVLEIYRQLSDGADFAQLAITRSAGETALEGGEIGWRRAAQL 246

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIA 372
           P     D++ S    G  T  +    GY+I  +   +        EV          +I 
Sbjct: 247 PPP--FDNLVSQLPVGGVTEPVRTPGGYIIIKLLEKRGGSAQIRDEVHVRHILIKPSEIR 304

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             +   +  E++ E     E+F  L  S  E
Sbjct: 305 TDIDARRLIERIHERILNGEDFAELAKSFSE 335


>gi|172060877|ref|YP_001808529.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
 gi|171993394|gb|ACB64313.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
          Length = 260

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               KK + ++ E++A Y++  +         +  ++  N+++A +    +K G KF  L
Sbjct: 103 ESFLKKNQPTDAEVKARYDELVKGAGGNREYHLHHILVDNEQQAKDLIAKIKGGAKFEDL 162

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           A++  K       G       P   + +  +     +KG  T   +   FG+ I    +I
Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRADDI 222

Query: 357 KPSFTVSFQEVK 368
           +      F +VK
Sbjct: 223 RDVAPPPFDQVK 234


>gi|317179979|dbj|BAJ57765.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           F32]
          Length = 299

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 13/175 (7%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
              + +      E+ KK++I   E+Q  Y  NK++ F  +      ++   + EA     
Sbjct: 116 QALVEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIIS 175

Query: 289 SL------KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336
            +      KK  KFI+LA       +         LG F K  +     + + F+L    
Sbjct: 176 EIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGD 234

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                +   FGY I ++ +     T ++ + K  I   ++     E++ +  + L
Sbjct: 235 YTKIPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQKIEEL 289


>gi|315453564|ref|YP_004073834.1| major antigenic peptide PEB3\Peptidyl-prolylcis-transisomerase C
           [Helicobacter felis ATCC 49179]
 gi|315132616|emb|CBY83244.1| major antigenic peptide PEB3\Peptidyl-prolylcis-transisomerase C
           [Helicobacter felis ATCC 49179]
          Length = 291

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 75/191 (39%), Gaps = 16/191 (8%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           F+    +Y+  +   +   +    E   K +I  D+L+  Y+ NK+++   E      ++
Sbjct: 93  FKSNLASYK--KQLLVEVWVKHRAEIIGKEQIPEDQLKQYYDTNKDRFVQQEA-QARHIL 149

Query: 277 FPNQKEADEAFQSLKKGKK------FIQLAEEQGKSLS------DISLGSFSKEYIPDVS 324
              + +A      L K  K      FI++A       +         LG F K  +    
Sbjct: 150 VKTEADARRIISELNKVPKTKVEHEFIKIANRDSIDPNTKNTKNGGDLGKFQKSQMT-PE 208

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
            + ++F L         +   FGY + ++ +     T +F + K+ I   ++  +  E V
Sbjct: 209 FSKAVFELRPGTYTKTPVKTEFGYHVVYLMHKSQPVTPTFAQAKQSIIGILKEQQFQEYV 268

Query: 385 KEDYKRLEEFL 395
           K + ++L + +
Sbjct: 269 KGELEKLRKQV 279


>gi|126662093|ref|ZP_01733092.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium BAL38]
 gi|126625472|gb|EAZ96161.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium BAL38]
          Length = 653

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/396 (14%), Positives = 121/396 (30%), Gaps = 55/396 (13%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +L   FL      A  S      + ++         F+  + + L ++       ++   
Sbjct: 6   LLIFSFLFV---SAFLSAQTKEVLFTIDNHPYYNDEFVRVYNKNLDLVKDDSQKDLD--- 59

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                   K LD  +      +    IGL                +  +   + + +  +
Sbjct: 60  --------KYLDLFLGYKLKVEKANKIGL-----------QNGLNYQNELKSYRNQLSKN 100

Query: 140 RLAREGIN---EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
            +    +     KE  D   + +  + ++ +   G  P + L    K    + R      
Sbjct: 101 YVNDSKVTNELVKEAYDRMQQEVRASHILVLVDEGALPQDTLKAYNKVIEIKRRLDAGED 160

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN---DEL 253
                     DPS             +       R+ Y   +     K  ++S       
Sbjct: 161 FITVAQQTSEDPSVKE-------NNGDLGYFSAFRMVYPFENAAYNTKVGQVSKPFRTRF 213

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----------DEAFQSLKKGKKFIQLAEEQ 303
                K  +K  +    TV  ++   Q +A          D+ ++ +++G+ F  LA++ 
Sbjct: 214 GYHIVKVLDKRVNRGEVTVAHIMIVKQNDAAQNEKAKTTIDDIYKKIQQGEAFESLAQQF 273

Query: 304 GKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            +  S    G     F    +      +  F L +K   +      FG+ I  +    P 
Sbjct: 274 SEDKSSAPKGGVLQRFGSGQLSSEEFENVAFELKEKDQISVPFQSQFGWHIVKLIEKHP- 332

Query: 360 FTVSFQEVKKDIANQMRITKASEKV-KEDYKRLEEF 394
              SF E+K ++  ++R  + S  +     K+L + 
Sbjct: 333 -VRSFDEMKFELEEKIRKDERSLLITNSLAKKLRDK 367



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 14/193 (7%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRI------SYILFDVHEKEKKIEISNDEL--QAEYEKN 260
           +   L  ++ +  +N   PE+K +        +LFD+ EKE      ND +     +  N
Sbjct: 449 TEEQLIAYYNENLEN-EFPEFKNVMDEYRDGLLLFDLMEKEIWNRAKNDTIGLHNYFANN 507

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
            + Y   +  + + L   ++K  ++A + LKKGK    + E+  K      +   SK  +
Sbjct: 508 IKNYQWKKRYSADILSSTDKKIVEKAQKFLKKGKSLEYIREQLNKD---GKVNIMSKSGM 564

Query: 321 PDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
            +      S F    KG  + V    + + + ++++ KP+      E K    +  +   
Sbjct: 565 YEEDYDVLSQFENLSKGVTSIVSKDQY-FFVVNITDEKPAGAKELSECKGKAISDYQQYL 623

Query: 380 ASEKVKEDYKRLE 392
            +  V E      
Sbjct: 624 ENNWVDELKSEFN 636


>gi|315635801|ref|ZP_07891063.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22]
 gi|315479780|gb|EFU70451.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22]
          Length = 269

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 8/155 (5%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG----KKFIQL 299
            KI+++  + +  YEKNKEK+  PE      ++   + EA +    L K     +KF +L
Sbjct: 107 DKIKVTEADKKDFYEKNKEKFVEPETFEASHILVKTEAEAKDIISQLDKASNKVEKFKEL 166

Query: 300 AE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           ++   +   + +  +LG F+ E +       ++ +LAK       +   FGY + ++ + 
Sbjct: 167 SKKSLDTASAKNGGALGRFAVEQMV-PEFGSAVKALAKGTYSKTPVKTQFGYHVIYLKDK 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            PS T ++ EV+K+I   +     ++K+KE  + L
Sbjct: 226 FPSKTFAYTEVEKNINQVLIGNALNKKIKELVEDL 260


>gi|210634928|ref|ZP_03298375.1| hypothetical protein COLSTE_02304 [Collinsella stercoris DSM 13279]
 gi|210158557|gb|EEA89528.1| hypothetical protein COLSTE_02304 [Collinsella stercoris DSM 13279]
          Length = 417

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 63/411 (15%), Positives = 128/411 (31%), Gaps = 90/411 (21%)

Query: 6   RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS------------GSSTVVSVGRQKV-- 51
           RK   +   KI LV + +  ++  +S    S                    +V    +  
Sbjct: 34  RKEKLSKTGKIVLVAIGIAAMLLSVSAMACSGVLNEVQSKEDYKLTGGVAATVNGVNIKE 93

Query: 52  -PFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
              +  I S +Q      +     ++ +        + ++D++V    L Q  +D G++ 
Sbjct: 94  DSVTEQIMSMRQSAYESDKDWATYLSQQGMTPETYRENVIDSIVRQYLLVQAEKDYGIKV 153

Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
               +      +     + N    D FV  +++ G  ++ Y+++    L++  +     G
Sbjct: 154 TQEDLDKAWKEA----VEGNGGDEDAFVETISQFGFTKETYLENIKSSLAQQKLREKVAG 209

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
                                             +  PS+  +  +  +    Y   + +
Sbjct: 210 ----------------------------------VKKPSDEDIVAYLNENLSTYN--DAR 233

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           R S+ILF V E                        + E R         + EA +    L
Sbjct: 234 RSSHILFKVAEDA----------------------TEEERA------KVEAEAQKVLDKL 265

Query: 291 KKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGY 348
             G+ +F + AE+  +  S  + G    + +           S    G  + ++  ++GY
Sbjct: 266 NAGEIEFAKAAEKYSEDGSAKNGGDVGWDKLTTFVTEYQDALSGLSDGQMSGLVKTTYGY 325

Query: 349 VIAHVSN-IKPSFTVSFQEV----KKDIANQMRITKASEKVKEDYKRLEEF 394
            I   +         S  EV    +  IA +++ T  SEK  E      E 
Sbjct: 326 HIIKCTGQFNVQTVSSIDEVPEGIRDAIAERIKTTAESEKYSEWLTEYTEK 376


>gi|115525459|ref|YP_782370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
 gi|115519406|gb|ABJ07390.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
          Length = 353

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 18/190 (9%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKR---ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           + V+ + +++  +  +  E  R   +  +               DE+Q  Y+ N+ +   
Sbjct: 136 DEVIEKKWDQRPNVVKQLERVRESAVVELYLQSVSTPPDSYPGEDEIQKVYDANRGQLVV 195

Query: 267 PEIRTVEQLVFPNQKEADEA------------FQSLKK-GKKFIQLAEEQGKSLSDISLG 313
           P    + Q+   + K+AD+A             + LK  G  F  +A E+  +     LG
Sbjct: 196 PRQYQLSQIFIASPKDADKATEDKARKKLEDIQKKLKAPGADFAAIAGEESDAKGSADLG 255

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           S  +  +    +   +  LAK G  +  I    G+ I  +++ K S+T +  EV+  +A 
Sbjct: 256 SIPENQLI-PEIRSHVVGLAK-GAVSDPIRLDAGWHIVKLTDTKASYTRTLPEVRDQLAQ 313

Query: 374 QMRITKASEK 383
           QMR  +A+  
Sbjct: 314 QMRKERAAAL 323



 Score = 38.0 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD--HTVAL 458
           +++I ++ K    D   +     D KG        + QL+  +      L+K        
Sbjct: 224 LEDIQKKLKAPGADFAAIAGEESDAKGSADLGSIPENQLIPEIRSHVVGLAKGAVSDPIR 283

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
            D  +  V++ ++  +  R L EV   + +  +  + A        +L+ +
Sbjct: 284 LDAGWHIVKLTDTKASYTRTLPEVRDQLAQQMRKERAAALRRGYLAELLKQ 334


>gi|322381189|ref|ZP_08055192.1| molecular chaperone lipoprotein-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154765|gb|EFX47036.1| molecular chaperone lipoprotein-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 351

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 25/168 (14%)

Query: 247 EISNDELQAEYEKNKEKYFSP-EIRTVEQLVF--------------PNQKEADEAFQSLK 291
           +++ DE +  Y++N  +  +  E+  V  ++                 +  A E    L+
Sbjct: 155 QVTEDETKKAYDENLAQEPNAYEVEDVSHILIGLKDQEGKDLRNKDEAKTRALEVKGKLE 214

Query: 292 KGKKFIQLAEEQGKSLSDISLG------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           KG+ F  LA+E          G       +S+          + +SL +    +  +   
Sbjct: 215 KGEDFAALAKEYSDDPGSKDKGGKYEKVDYSQMMQFVEPFKQAAWSLEEN-KISDPVETD 273

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           +GY I  V N K     ++ EVK  I +Q+   K  + ++++  +L E
Sbjct: 274 YGYHIMKVENRKK---QTYDEVKDQIRSQLSQKKMRDYIEQEVPKLIE 318


>gi|302343060|ref|YP_003807589.1| SurA domain protein [Desulfarculus baarsii DSM 2075]
 gi|301639673|gb|ADK84995.1| SurA domain protein [Desulfarculus baarsii DSM 2075]
          Length = 327

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/380 (12%), Positives = 115/380 (30%), Gaps = 72/380 (18%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK-QELGMISQKIGFV 74
           +   + FV      L+  L     +  V  VG + +  +    S +     +   +    
Sbjct: 6   VIAGLAFVTMAFAPLA-VLAEELVNRVVAVVGDEPITAAELDRSIQGLLQRLQMMQQQQG 64

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
            N     +  +    L++L+     ++ +E + +      V   + R        N  + 
Sbjct: 65  QNMAMPPAAEVRYMALNSLIDEKLFNKEVERLKISVSEEEVSMFLERLKA----ANNMTQ 120

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
             F++RL   G+  +EY +       +  ++                             
Sbjct: 121 QEFIARLNETGMTPEEYREKVRNDQLKRKLIN---------------------------- 152

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
                  V      S+  +  +  ++      PE  +       +     K+        
Sbjct: 153 -----YEVKNKVVISDKEVDDYLAEH------PELVQGGGPQLTIQALFLKLP------- 194

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDIS 311
               +N       ++R           +A+   +    G  F ++         + S   
Sbjct: 195 ----ENAGDDVKAQLR----------AKAEALREEAVDGADFDEMCRANSQGPGAASGGK 240

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           +G  SK  +    +  ++ ++ K+GD +PV+    G V   + ++      S  EV+  +
Sbjct: 241 IGPLSKSDLL-PEMGKALETM-KEGDMSPVLDIPSGVVFMRLISLTDGKEGS-AEVRDQV 297

Query: 372 ANQMRITKASEKVKEDYKRL 391
             ++   +  E+  E  K L
Sbjct: 298 RARLENNQLEERFGEWMKEL 317


>gi|225166093|ref|ZP_03727827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae
           bacterium TAV2]
 gi|224799664|gb|EEG18159.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae
           bacterium TAV2]
          Length = 351

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 101/364 (27%), Gaps = 72/364 (19%)

Query: 31  SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
            D L     +     V  + +            L  I +        +  +   + + I+
Sbjct: 48  DDGLDMRFANGIAAIVEDRVITVDDIRRELAPILPQIRRDSRNAKEFQD-KVQAVQEDIV 106

Query: 91  DNLVSGATLDQFIEDIGLE-ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
            +L+    + +     G        +   I+        DN      F+S L   G+  +
Sbjct: 107 RSLIDRTLIVKDFYKDGRRHIPASYIDNAISDQMA-QKFDN--DRAKFLSYLRARGLTLR 163

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
           +Y     + L                            + R    I             S
Sbjct: 164 DYRKEVEEDLV---------------------YGYMRSQQRKSQSI------------VS 190

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
            A +  ++++ +  +   E   +  I  +    +                          
Sbjct: 191 PARVEAYYKQNESKFYQEEAIHLRMIQLNRENGQAD------------------------ 226

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLAD 327
                L+      A+E       G+KF  LA+   +       G +   ++       + 
Sbjct: 227 ---AHLIV----RANEIIDKFNNGEKFEDLAKAYTQDSRKARGGDWGWQRKVDLKPDFST 279

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
            +FSL K G   P++ G   + I +  + + +   +  EV+  I   +    A E  ++ 
Sbjct: 280 PLFSLKKGGVTAPILQGDACF-ILYAEDYRAAGVPAIDEVRDQIERTLIAQMARESQEKW 338

Query: 388 YKRL 391
            ++L
Sbjct: 339 LEKL 342



 Score = 37.3 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 38/128 (29%), Gaps = 9/128 (7%)

Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
           +A   +      + +    G   +++++     S      D+  +    ++V   P    
Sbjct: 224 QADAHLIVRANEIIDKFNNGEKFEDLAKAYTQDSRKARGGDWGWQ----RKVDLKPDFST 279

Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
            LF +              L   +   +  ++   A    ++EV   +++        E 
Sbjct: 280 PLFSL-----KKGGVTAPILQGDACFILYAEDYRAAGVPAIDEVRDQIERTLIAQMARES 334

Query: 499 VSSKANQL 506
                 +L
Sbjct: 335 QEKWLEKL 342


>gi|62178657|ref|YP_215074.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|75505914|sp|Q57TG8|SURA_SALCH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|62126290|gb|AAX63993.1| peptidyl-prolyl cis-trans isomerase, survival protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 428

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 60/405 (14%), Positives = 121/405 (29%), Gaps = 68/405 (16%)

Query: 40  SSTVVSVGRQKVPFSSFI---NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
                 V    V  S       S K   G   Q++             L  +IL+ L+  
Sbjct: 26  DKVAAIVNNGVVLESDVDGLMQSVKLNAGQAGQQLP--------DDATLRHQILERLIMD 77

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             + Q  + +G++    ++   IA       K N  + D   SRLA +G+N   Y +   
Sbjct: 78  QIILQMGQKMGVKITDEQLDQAIANI----AKQNNMTMDQMRSRLAYDGLNYSTYRNQIR 133

Query: 157 KMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN------RSVDYIVLNNRHVPAIADPS 209
           K +  ++V        +      +D   +            ++ +I++     P     +
Sbjct: 134 KEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLRHILIALPENPTSEQVN 193

Query: 210 NAVLTQW------------------FEKYKDNY--------RAPEYKRISYILFDVHEKE 243
           +A                       +   +           R  E   I        +K 
Sbjct: 194 DAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKG 253

Query: 244 KKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFP-----NQKEA----DEAFQS 289
             +      +     K  +     +           ++       N ++A    +E    
Sbjct: 254 DIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQARLKLEEIAAD 313

Query: 290 LKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           +K GK  F   A+E  +     + G    ++   I D +  D++  L K G  +  +H S
Sbjct: 314 IKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHK-GQISAPVHSS 372

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           FG+ +  + + +     +    K      +   K SE+     + 
Sbjct: 373 FGWHLIELLDTRK-VDKTDAAQKDRAYRMLMNRKFSEEAATWMQE 416



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
               YR    K +       +E  ++I +   E+ A  ++   +  +     +  ++   
Sbjct: 124 NYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLRHILIAL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       Q++A+   +  + G  F +LA         +  G      I +   + 
Sbjct: 184 PENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S ++S  EV    I  +       ++ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   + +   +  G +    +   K  S D    +  G           P     L ++
Sbjct: 304 RLKLEEIAADIKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 360


>gi|187734800|ref|YP_001876912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187424852|gb|ACD04131.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 384

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 111/359 (30%), Gaps = 68/359 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL-DKKILDNLVSGAT 98
           +    +V  + +  +            ++ +       E  + + L  K I+++LV    
Sbjct: 83  NRIAATVNGRPITANEVSVRLMPIGAQLAAQYPKQ-GPEFYKQLALAKKNIIEDLVEREL 141

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L    E +G       +  E+ R+ +    +       F+  L+  G+  + + +   K 
Sbjct: 142 LRNEFEGMGGVIRDSLIDQEVNRT-ILTTFNG--DRSAFLKNLSLSGMTIRAFREMTKKQ 198

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L    +                                           P+   + Q +E
Sbjct: 199 LQVQIMR---------------------------------ASKYDQEIPPTPEEIQQEYE 225

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             K+ YR     +I +    +                      +   +PE++        
Sbjct: 226 STKEQYRDLTKDKIKFKKIFIPMLGD-----------------DSASTPEVQL------- 261

Query: 279 NQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSF--SKEYIPDVSLADSIFSLAKK 335
               A+   + +K K   F ++A+   K L     G +  ++        A  IF  A+ 
Sbjct: 262 --NLAELIAKEIKSKNATFEEMAKRYSKDLYAEKGGDWPVTERSTLSPESAAIIFG-AQP 318

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           G+    +  S G+ I  V   + +       +K+ I    R  +++E+ K+  +RL + 
Sbjct: 319 GEIIGPLVDSTGFTIVLVEKKELAPPPPLSAIKEQIDIMARNKRSNERYKKWVERLRKK 377


>gi|161528450|ref|YP_001582276.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosopumilus
           maritimus SCM1]
 gi|160339751|gb|ABX12838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosopumilus
           maritimus SCM1]
          Length = 92

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADS 328
             ++   Q EA    + LK G+KF +LA+E     G +  + +LG F+K  +      D+
Sbjct: 8   SHILVSKQSEALAIMEKLKSGEKFGKLAKELSIDSGSAKKNGNLGYFTKGMMVKP-FEDA 66

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAH 352
            F L + G+ +  I   FGY I  
Sbjct: 67  AFKL-QVGEVSEPIKSEFGYHIIK 89


>gi|313496769|gb|ADR58135.1| Chaperone surA [Pseudomonas putida BIRD-1]
          Length = 439

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/409 (12%), Positives = 128/409 (31%), Gaps = 65/409 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S       +    I+++ G V  +       L++++L+ L+     
Sbjct: 31  DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPTS-----ALEQQVLERLIVENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S D F + LAR+G++ ++  +   + +
Sbjct: 86  LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALARDGLSFEDAREQVKREM 141

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
             + V        ++ S   +         + +  +   L N  +P     ++  + +  
Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLASDLGKMQMSEEYRLANILIPTPEAANSDDIQKAA 201

Query: 218 EKYKDNYRAPEY-------------------------KRISYILFDVHEKEKKIEISNDE 252
            K  D Y+                             ++   +  D  +    + +    
Sbjct: 202 RKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSMPVGEIT 261

Query: 253 LQAEYEKNKEKYFSPEIR-----------TVEQLVF---------PNQKEADEAFQSLKK 292
                          E R            V  ++            Q+ A+  +  +K 
Sbjct: 262 QPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATQQLAERLYDRIKN 321

Query: 293 GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G+ F +LA+    + G +L+   L       +          +  ++G  T      +G+
Sbjct: 322 GEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGVVTKPFKTQYGW 379

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396
            +  V   + + +   ++ ++  A   +R  K  E+++   +++ +   
Sbjct: 380 HVLEVLGRRATDST--EQAREQQALGVLRNRKYDEELQTWLRQIRDEAY 426



 Score = 38.0 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 103/309 (33%), Gaps = 45/309 (14%)

Query: 363 SFQEVKKDIANQ-----MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           SF++ ++ +  +     +R  + +E+++   + ++ FLA      ++S   ++ +I +P 
Sbjct: 129 SFEDAREQVKREMIISRVRQRRVAERIQVSEQEVKNFLASDLGKMQMSEEYRLANILIPT 188

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKDHTVALPDGSYMWVQ-------- 467
            + A  D   K    +    Q L     FG+    +     AL  G   W +        
Sbjct: 189 PEAANSDDIQKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDF 248

Query: 468 --------IKESIPARDRK-------LEE--------VLTDVKKDWKTVKTAEEVSSKAN 504
                   + E               LEE        +  +V      +K +E  S  A 
Sbjct: 249 AKMLSSMPVGEITQPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAAT 308

Query: 505 QLVLEYS----KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
           Q + E      K G++F ++ K+      +      ++  +         +  +   + V
Sbjct: 309 QQLAERLYDRIKNGEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANAQQGV 368

Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
              P +    + V +V   +     E+    + +  L      + L + +  ++ +  V 
Sbjct: 369 VTKPFKTQYGWHVLEVLGRRATDSTEQAREQQALGVLRNRKYDEELQTWLRQIRDEAYVE 428

Query: 618 VHDNLIQRY 626
           +      + 
Sbjct: 429 IKLPGADQA 437


>gi|261245325|emb|CBG23113.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
          Length = 428

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 117/371 (31%), Gaps = 61/371 (16%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENR 190
           + D   SRLA +G+N   Y +   K +  ++V        +      +D   +    +N 
Sbjct: 110 TMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQND 169

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK-RISYILFDVHEKEKKIEIS 249
           +   + L++  +    +P++  +     + +      E +    +    +     +  + 
Sbjct: 170 ASTELNLSHILIALPENPTSEQVND--AQRQAESIVEEARNSADFGKLAITYSADQQALK 227

Query: 250 N--------DELQAEYEKNKEKYFSPE-----------------------------IRTV 272
                     EL   + +        +                                 
Sbjct: 228 GGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHA 287

Query: 273 EQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEY 319
             ++       N ++A    +E    +K GK  F   A+E  +     + G    ++   
Sbjct: 288 RHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPD 347

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           I D +  D++  L K G  +  +H SFG+ +  + + +     +    K      +   K
Sbjct: 348 IFDPAFRDALTKLHK-GQISAPVHSSFGWHLIELLDTRK-VDKTDAAQKDRAYRMLMNRK 405

Query: 380 ASEKVKEDYKR 390
            SE+     + 
Sbjct: 406 FSEEAATWMQE 416



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 77/239 (32%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
               YR    K +       +E  ++I +   E+ A  ++   +  +     +  ++   
Sbjct: 124 NYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIAL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       Q++A+   +  +    F +LA         +  G      I +   + 
Sbjct: 184 PENPTSEQVNDAQRQAESIVEEARNSADFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S ++S  EV    I  +       ++ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   + +   +  G +    +   K  S D    +  G           P     L ++
Sbjct: 304 RLKLEEIAADIKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 360


>gi|78067506|ref|YP_370275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
 gi|122070639|sp|Q39D35|SURA_BURS3 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|77968251|gb|ABB09631.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
          Length = 452

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/410 (11%), Positives = 124/410 (30%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 40  DEVVAVVNNDVITGRELDQRAGLIARRLQQQNAPVPPTDQ-----LRAQVLNQMVLERIQ 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D   V   + R      + N  + + +  RL  +G+    +       L
Sbjct: 95  VQKAKDDGIRIDDATVQSTLQRL----AQANGMTLEQYRGRLEAQGVPWSVFTSDARTEL 150

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDYIVL--------NNRHVPAI 205
             + +    V G +  S+  +             + + + +  +            + A 
Sbjct: 151 MLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQADIEAA 210

Query: 206 ADPSNAVLTQ---------WFEKYKDN----------YRAP-----EYKRISYILFDVHE 241
              ++A+L Q           +   +           ++AP     +    +  L     
Sbjct: 211 QKKADALLQQAKSGADFEKLAKNNSEANDAKKGGDLGFKAPSALPADVVDAASKLRPGQV 270

Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286
               I + +  E+    ++ + +  +          V  ++            +++  + 
Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLADI 330

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
              ++ G  F + A    + G +     LG  S           ++ +L + G  +  I 
Sbjct: 331 RNQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPIR 388

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V + + +   S Q+        +   KA +   +  + L +
Sbjct: 389 TEYGYHLIQVLSRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437


>gi|16759087|ref|NP_454704.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16763482|ref|NP_459097.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29140637|ref|NP_803979.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56412363|ref|YP_149438.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|167550725|ref|ZP_02344482.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167989955|ref|ZP_02571055.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168230361|ref|ZP_02655419.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168234847|ref|ZP_02659905.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168243501|ref|ZP_02668433.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168464364|ref|ZP_02698267.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820926|ref|ZP_02832926.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194444526|ref|YP_002039322.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451624|ref|YP_002044060.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194469029|ref|ZP_03075013.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736155|ref|YP_002113109.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197248833|ref|YP_002145076.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197263512|ref|ZP_03163586.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197361300|ref|YP_002140935.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198244102|ref|YP_002214044.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200386716|ref|ZP_03213328.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204926901|ref|ZP_03218103.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205351432|ref|YP_002225233.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207855605|ref|YP_002242256.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213427535|ref|ZP_03360285.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213648902|ref|ZP_03378955.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|224581934|ref|YP_002635732.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238911150|ref|ZP_04654987.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289826182|ref|ZP_06545294.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|81677737|sp|Q5PDE6|SURA_SALPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|81706931|sp|Q7CR87|SURA_SALTY RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|81766233|sp|Q8XEV3|SURA_SALTI RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|25513082|pir||AH0513 survival protein SurA precursor [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16418589|gb|AAL19056.1| peptidyl-prolyl cis-trans isomerase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16501377|emb|CAD01248.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136261|gb|AAO67828.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56126620|gb|AAV76126.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|194403189|gb|ACF63411.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194409928|gb|ACF70147.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194455393|gb|EDX44232.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711657|gb|ACF90878.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195632865|gb|EDX51319.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197092775|emb|CAR58200.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197212536|gb|ACH49933.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197241767|gb|EDY24387.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197291654|gb|EDY31004.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197938618|gb|ACH75951.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199603814|gb|EDZ02359.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323566|gb|EDZ08761.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205271213|emb|CAR36001.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205324462|gb|EDZ12301.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205331363|gb|EDZ18127.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205335129|gb|EDZ21893.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205337413|gb|EDZ24177.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205342524|gb|EDZ29288.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|206707408|emb|CAR31681.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224466461|gb|ACN44291.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|267991763|gb|ACY86648.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301156721|emb|CBW16195.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911062|dbj|BAJ35036.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320084330|emb|CBY94123.1| survival protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321222338|gb|EFX47410.1| Survival protein SurA precursor Peptidyl-prolyl cis-trans isomerase
           SurA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322615913|gb|EFY12830.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322620698|gb|EFY17558.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322623951|gb|EFY20788.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627399|gb|EFY24190.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322630706|gb|EFY27470.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322638074|gb|EFY34775.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640560|gb|EFY37211.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647700|gb|EFY44185.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648050|gb|EFY44517.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322656918|gb|EFY53204.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657371|gb|EFY53643.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663691|gb|EFY59891.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666524|gb|EFY62702.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672317|gb|EFY68429.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676371|gb|EFY72442.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322679536|gb|EFY75581.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686135|gb|EFY82119.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323128410|gb|ADX15840.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323194979|gb|EFZ80165.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200112|gb|EFZ85199.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201067|gb|EFZ86136.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323209464|gb|EFZ94397.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212284|gb|EFZ97108.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216589|gb|EGA01315.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222472|gb|EGA06842.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225783|gb|EGA10003.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228676|gb|EGA12805.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236710|gb|EGA20786.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239789|gb|EGA23836.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242163|gb|EGA26192.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249412|gb|EGA33328.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252253|gb|EGA36104.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256656|gb|EGA40386.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261310|gb|EGA44897.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265510|gb|EGA49006.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271702|gb|EGA55120.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326621788|gb|EGE28133.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326626455|gb|EGE32798.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332987044|gb|AEF06027.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 428

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 117/371 (31%), Gaps = 61/371 (16%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENR 190
           + D   SRLA +G+N   Y +   K +  ++V        +      +D   +    +N 
Sbjct: 110 TMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQND 169

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIEIS 249
           +   + L++  +    +P++  +     + +      E +    +    +     +  + 
Sbjct: 170 ASTELNLSHILIALPENPTSEQVND--AQRQAESIVEEARNGADFGKLAITYSADQQALK 227

Query: 250 N--------DELQAEYEKNKEKYFSPE-----------------------------IRTV 272
                     EL   + +        +                                 
Sbjct: 228 GGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHA 287

Query: 273 EQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEY 319
             ++       N ++A    +E    +K GK  F   A+E  +     + G    ++   
Sbjct: 288 RHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPD 347

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           I D +  D++  L K G  +  +H SFG+ +  + + +     +    K      +   K
Sbjct: 348 IFDPAFRDALTKLHK-GQISAPVHSSFGWHLIELLDTRK-VDKTDAAQKDRAYRMLMNRK 405

Query: 380 ASEKVKEDYKR 390
            SE+     + 
Sbjct: 406 FSEEAATWMQE 416



 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
               YR    K +       +E  ++I +   E+ A  ++   +  +     +  ++   
Sbjct: 124 NYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIAL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       Q++A+   +  + G  F +LA         +  G      I +   + 
Sbjct: 184 PENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S ++S  EV    I  +       ++ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   + +   +  G +    +   K  S D    +  G           P     L ++
Sbjct: 304 RLKLEEIAADIKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 360


>gi|121604733|ref|YP_982062.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
 gi|120593702|gb|ABM37141.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
          Length = 263

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 4/156 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
              +KK  +++ +L+AEY+K        E +    ++   + EA     SLKKG KF  +
Sbjct: 107 ASYQKKNPVTDADLKAEYDKFAAASGGKEYK-ARHILVEKESEATAIIASLKKGGKFEDI 165

Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++Q K     + G       P        +++  L K       +   FGY +  V +I
Sbjct: 166 AKKQSKDPGSGAKGGDLDWANPSSYVPEFTEALLKLNKGQMTDTPVKSQFGYHVIRVDDI 225

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + +   +F+EVK  IA QM+  K +   +E  K+ +
Sbjct: 226 RSAKLPAFEEVKPQIAQQMQQQKLAAFQEELRKKAK 261


>gi|158421935|ref|YP_001523227.1| PpiC-type peptidyl-prolyl cis-trans isomerase precursor
           [Azorhizobium caulinodans ORS 571]
 gi|158328824|dbj|BAF86309.1| PpiC-type peptidyl-prolyl cis-trans isomerase precursor
           [Azorhizobium caulinodans ORS 571]
          Length = 314

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 4/166 (2%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           Y R   ++  +   E K  ++ D  +  Y++  ++           ++  ++ +A E   
Sbjct: 120 YLRTKALMETLMAAEAKKAVTEDAKRKTYDEFVKQTKPETEVHARHILVDSEAKAKEIAA 179

Query: 289 SLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             K G  F +LA+E  K        LG F+K+ +     AD+ F L K G  +  +   F
Sbjct: 180 KAKAGADFAKLAKENSKDSAEDGGDLGYFTKDQMV-PEFADAAFKLDK-GQVSDPVKTQF 237

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           G+ +  V + +     ++++V   I   +     S+ V +     +
Sbjct: 238 GWHVIKVEDKRQKPIPTYEQVSDQIDQYLIRKAQSDLVTKLRSDAK 283


>gi|307610559|emb|CBX00147.1| hypothetical protein LPW_18921 [Legionella pneumophila 130b]
          Length = 253

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 97/262 (37%), Gaps = 21/262 (8%)

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
           QEV+  I +Q+    A  K  +  ++L +      + D +      + + +   +   +D
Sbjct: 2   QEVENIIKDQLTSDMAQAKYAQVLEQLTDLSYQ--TPDSLDPVLDSLKLKIQHTEPFSRD 59

Query: 425 VKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
              + +      +Q++   F  D  +  +    + + + S + +++K+ IP+R++ L+EV
Sbjct: 60  GGKQPITK---NKQVIHAAFSTDVLELGNNSEPIQIDNDSVIVLRVKKHIPSREQTLDEV 116

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSK--EGKNFRDIGKNLGASLLTTNQINRMDNE 540
              +KK        +   +KA ++        E K  +++  N      +    +R  ++
Sbjct: 117 RDQIKKIL----AKQYGDAKAKEIGSSLLHPVEDKQQQELIANNQFEWHSVENASRDSDK 172

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV-----QEKDKFISYLT 595
                 D     F+      +   I +   YVV K+     G +     +++D  I  + 
Sbjct: 173 ANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRINDGKLSSLDQEQRDSLIQQIE 229

Query: 596 QMMNKDLLDSVIAYLKSQYSVT 617
                   D  +  L     + 
Sbjct: 230 ASYGMMDYDLYVNNLLHHAKIE 251



 Score = 45.0 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 15/171 (8%)

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            + +  +  L    +  P+   +   ++  V    PS   +  EV+  I   +       
Sbjct: 74  AAFSTDVLELGNNSE--PIQIDNDSVIVLRVKKHIPSREQTLDEVRDQIKKILAKQYGDA 131

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
           K KE    L   +      + I+        +   V+ A +D              LL  
Sbjct: 132 KAKEIGSSLLHPVEDKQQQELIANN----QFEWHSVENASRDSDKANSLINDLAFNLLR- 186

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE-EVLTDVKKDWKT 492
                        V L +G Y+ V++K     +   L+ E    + +  + 
Sbjct: 187 -------PESRDGVILDNGDYVVVKLKRINDGKLSSLDQEQRDSLIQQIEA 230


>gi|188532873|ref|YP_001906670.1| peptidyl-prolyl cis-trans isomerase SurA [Erwinia tasmaniensis
           Et1/99]
 gi|188027915|emb|CAO95772.1| Peptidyl-prolyl cis-trans isomerase, survival protein [Erwinia
           tasmaniensis Et1/99]
          Length = 431

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/383 (14%), Positives = 118/383 (30%), Gaps = 70/383 (18%)

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
               L  +IL+ LV    L Q  +  GL+    ++   IA       + NK S D   SR
Sbjct: 62  DDKTLRHQILERLVMDNILLQKAKQAGLQVSDAQLDQAIANI----AQQNKLSIDQLRSR 117

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN------RSVD 193
           LA +G+N   Y +   + ++ ++V        +      +D                ++ 
Sbjct: 118 LAYDGMNYATYREQIRQEMATSEVRNSEVRRRVSILPQEVDSLAEQMASQNSAGTELNIS 177

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--- 250
           +I+L     P      +       EK      +       +    +        +     
Sbjct: 178 HILLPLSENPTQQQVDDQ------EKLARQLTSEARSGADFAKLAIANSADAQALKGGNM 231

Query: 251 -----DELQAEYEKNKEKYFSPE-----------------------------IRTVEQLV 276
                 EL + + +        +                                   ++
Sbjct: 232 GWGRLQELPSLFAQALVTAKKGDIIGPIRSGVGFHILKVNDMRGDNQSISVTEVHARHIL 291

Query: 277 FP---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGS---FSKEYIPDV 323
                       +++  +    +K GK  F   A++  +     + G    +S   + D 
Sbjct: 292 LKPSPIMTDDQARQKLQQVAAEIKSGKLTFSDAAKQLSQDPGSANQGGDLGWSSAEVFDP 351

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           +  D++  L KKG  +  +H SFG+ +  + + +          KK+ A ++   +   +
Sbjct: 352 AFRDALLRL-KKGQISDPVHSSFGWHLIELMDTRKVDKT--DAAKKERAYRLLFNRKFAE 408

Query: 384 VKEDYKRLEEFLALGTSMDEISR 406
             + + + E   A    +D  ++
Sbjct: 409 EAQTWMQEERAAAYVKILDPNAQ 431


>gi|83719320|ref|YP_442657.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia thailandensis E264]
 gi|167581594|ref|ZP_02374468.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           thailandensis TXDOH]
 gi|167619710|ref|ZP_02388341.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           thailandensis Bt4]
 gi|257138870|ref|ZP_05587132.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia thailandensis E264]
 gi|83653145|gb|ABC37208.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           thailandensis E264]
          Length = 259

 Score = 88.1 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK + S+ EL+A Y+   +     E   +  ++  N+++A +    +K G KF  L
Sbjct: 103 EDFLKKNQPSDTELKARYDDLVKNAGGREY-HLHHILVDNEQQAKDLIAKIKGGAKFEDL 161

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           A++  K       G       P   + +  +     +KG  T   +   FG+ I  V +I
Sbjct: 162 AKQYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQHLQKGQMTDTPVKTQFGWHIIRVDDI 221

Query: 357 KPSFTVSFQEVK 368
           +      F++VK
Sbjct: 222 RNITPPPFEQVK 233


>gi|227357298|ref|ZP_03841655.1| chaperone SurA protein [Proteus mirabilis ATCC 29906]
 gi|227162561|gb|EEI47550.1| chaperone SurA protein [Proteus mirabilis ATCC 29906]
          Length = 445

 Score = 88.1 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 60/442 (13%), Positives = 133/442 (30%), Gaps = 67/442 (15%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG---SSTVVSVGRQKVPFSSFINSWK 61
           +RK     + K +  ++    +  G + +  + +    +     V    V  S      +
Sbjct: 1   MRKTHNGKLMKNWKTLVIGLMITVGAATSTTTFAAQELNRVSAIVNNGVVLESDVNRMLQ 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                  Q        E      L ++IL+ LV    + Q  + + ++     V   I  
Sbjct: 61  TV-----QMNAKNAGQEMPDEQVLRQQILERLVMDNIILQMAQQMQIDIPEAAVESTIQG 115

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLD 180
                  +N  + +    RLA +GI   +Y     K +   +V        +      +D
Sbjct: 116 IAA----ENNLTLEQLKKRLAADGIAYNDYRQDIRKEMMLAEVRNNEVRRRITILPQEVD 171

Query: 181 QAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
              +      S    + L++  +P   +PS A + +  ++  +  +        +     
Sbjct: 172 SLAKQIESQASQSIDLNLSHILIPLSENPSPAEIEK-AQQVVNRIKNQLKNGADFGKLAA 230

Query: 240 HEKEKKIEI--------SNDELQAEYEKNKEKYFSPE----------------------- 268
                   +        S DEL   + K        E                       
Sbjct: 231 TYSADPQALNGGNMGWASIDELPTIFAKQLANAQKGEIVGPLQSGVGLHIIKVNDIRGAS 290

Query: 269 ------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISL 312
                       ++       N ++A     +    ++ GK  F   A+E  +       
Sbjct: 291 KTVSVTEVKARHILLKSSPIMNDEQAYAKLQKISADIRSGKISFADAAKEYSEDPGSALR 350

Query: 313 GSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
           G      +P   D +  D++  L K  + +  +  +FG+ +  + + + S   +    K+
Sbjct: 351 GGELGWSMPDIYDPAFRDALMRLNKN-ELSQPVRSNFGWHLIELEDTR-SVDKTDAANKE 408

Query: 370 DIANQMRITKASEKVKEDYKRL 391
                +   K +E+V+   + L
Sbjct: 409 QAYRLLFNRKFNEEVQNWMQEL 430



 Score = 66.9 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 98/282 (34%), Gaps = 23/282 (8%)

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY----IVLNNRHVPAI 205
           + +    K   +       +       L++D       +   +D     +    + + A 
Sbjct: 60  QTVQMNAKNAGQEMPDEQVLRQQILERLVMDNIILQMAQQMQIDIPEAAVESTIQGIAAE 119

Query: 206 ADPSNAVLTQWFEKY---KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
            + +   L +         ++YR    K +       +E  ++I I   E+ +  ++ + 
Sbjct: 120 NNLTLEQLKKRLAADGIAYNDYRQDIRKEMMLAEVRNNEVRRRITILPQEVDSLAKQIES 179

Query: 263 KYFSPEIRTVEQLVFP-----NQKEADEAFQ-------SLKKGKKFIQLAEEQGKSLSDI 310
           +        +  ++ P     +  E ++A Q        LK G  F +LA         +
Sbjct: 180 QASQSIDLNLSHILIPLSENPSPAEIEKAQQVVNRIKNQLKNGADFGKLAATYSADPQAL 239

Query: 311 SLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVK 368
           + G+     I +  ++     + A+KG+    +    G  I  V++I+  S TVS  EVK
Sbjct: 240 NGGNMGWASIDELPTIFAKQLANAQKGEIVGPLQSGVGLHIIKVNDIRGASKTVSVTEVK 299

Query: 369 KD-IANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRRE 408
              I  +       E+     +++  +  +   S  + ++  
Sbjct: 300 ARHILLKSSPIMNDEQAYAKLQKISADIRSGKISFADAAKEY 341


>gi|167031450|ref|YP_001666681.1| SurA domain-containing protein [Pseudomonas putida GB-1]
 gi|166857938|gb|ABY96345.1| SurA domain [Pseudomonas putida GB-1]
          Length = 441

 Score = 88.1 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/409 (12%), Positives = 132/409 (32%), Gaps = 65/409 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S       +    I+++ G V       +  L++++L+ L+     
Sbjct: 33  DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPP-----TGALEQQVLERLIVENLQ 87

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S D F + LA +G++  +  +   + +
Sbjct: 88  LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALAHDGLSFDDAREQVKREM 143

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAK-------RFYFENRSVDYIVLNNRHV-PAIADPSN 210
             + V        ++ S   +           +   E R  + ++             + 
Sbjct: 144 IISRVRQRRVAERIQVSEQEVKNFLNSDMGKMQMSEEYRLANILIPTPEAANSDDIQKAA 203

Query: 211 AVLTQWFEKYKD--NY-------------------------RAPEYKRISYILFDVHEKE 243
             +   +++ +   ++                         + P           V E  
Sbjct: 204 RKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSMPVGEIT 263

Query: 244 KKIEISNDELQAEYEKNK--EKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKK 292
           + I I N  +  + E+ +   +    +   V  ++            ++ A+  +  +K 
Sbjct: 264 QPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATEQLAERLYDRIKN 323

Query: 293 GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G+ F +LA+    + G +L+   L       +          +  ++G  T      +G+
Sbjct: 324 GEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGVVTKPFKTQYGW 381

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396
            +  V   + + +   ++ ++  A + +R  K  E+++   +++ +   
Sbjct: 382 HVLEVLGRRATDST--EQAREQQALSVLRNRKYDEELQTWLRQIRDEAY 428



 Score = 38.8 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/254 (10%), Positives = 85/254 (33%), Gaps = 19/254 (7%)

Query: 378 TKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
            KA+ KV + Y++L +    G  ++   +    +   ++                     
Sbjct: 200 QKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPD---------- 249

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKT 495
                ++            + +P+G ++ ++++E     +  L +EV         +   
Sbjct: 250 ---FAKMLSSMPVGEITQPIRIPNG-FIILKLEEKRGGSENVLRDEVHVRHILIKPSEIR 305

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
           +E  + +  + + +  K G++F ++ K+      +      ++  +         +  + 
Sbjct: 306 SEAATEQLAERLYDRIKNGEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMAN 365

Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKS 612
             + V   P +    + V +V   +     E+    + +S L      + L + +  ++ 
Sbjct: 366 AQQGVVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQALSVLRNRKYDEELQTWLRQIRD 425

Query: 613 QYSVTVHDNLIQRY 626
           +  V +      + 
Sbjct: 426 EAYVEIKLPGADQA 439


>gi|152982039|ref|YP_001352108.1| peptidyl-prolyl cis-trans isomerase SurA [Janthinobacterium sp.
           Marseille]
 gi|151282116|gb|ABR90526.1| peptidyl-prolyl cis-trans isomerase SurA [Janthinobacterium sp.
           Marseille]
          Length = 469

 Score = 87.7 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/325 (14%), Positives = 104/325 (32%), Gaps = 74/325 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            + +V V  + +    F+  +K     +  + G +   E+     L +++L+ ++     
Sbjct: 50  DAIIVVVNNEVITRYDFLERYKMIEARLQSQGGNLPPREQ-----LQRQLLERMIVERAQ 104

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G++ D   +   + R      + NK S   F  RL  +G+   ++ +     +
Sbjct: 105 LQQAKETGIKIDDTMLDRAMGRI----AEQNKLSMPEFRKRLEEDGLVYSKFRNEIRDEM 160

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +   +                         R VD               S+  +  +   
Sbjct: 161 AIQRLRE-----------------------REVD----------NKVQVSDVEIDAY--- 184

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                 A      +    ++H  +  I +  +  Q +                   +  +
Sbjct: 185 -----MAAHNAPAATAPQELHIAQILIRVPENATQKQ-------------------LADS 220

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           ++ ADE    L  G  F +LA         L+   LG  S E +P +   D+  +L + G
Sbjct: 221 KRRADEVVAQLAAGADFAKLASAYSDGTDGLTGGELGWRSAERLPQL-FVDATANL-QDG 278

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFT 361
              P++    G+ I  +   +    
Sbjct: 279 QIAPIVKSGNGFHILKLLGRRTQSV 303


>gi|331000013|ref|ZP_08323709.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
           YIT 11859]
 gi|329573161|gb|EGG54778.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
           YIT 11859]
          Length = 270

 Score = 87.7 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 7/180 (3%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E +   Y          +  I+ ++++  Y+     Y  P       ++    +EA E  
Sbjct: 93  EKQAQLYGSILSRRYASEHPITEEQVRNRYDSLLSSY-DPHEIKFRHILVKTPEEAREII 151

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKGDFTP-VI 342
           QSLK G  F  LA+E+    S    G      +   +    LA++I +L + GD  P   
Sbjct: 152 QSLKVGSDFGSLAKERSLDQSTSQNGGQIPFTNIRNVLVPGLAEAILAL-QPGDLLPVPF 210

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
               GY +  +   +     S++EVK  + +++   + +E + +  K  +      +S+D
Sbjct: 211 KSKLGYHVVLLEEKREVPFPSYEEVKPKVLSELERLQTTEFLNDLQKDAKILKVSDSSVD 270


>gi|218262309|ref|ZP_03476823.1| hypothetical protein PRABACTJOHN_02497 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223460|gb|EEC96110.1| hypothetical protein PRABACTJOHN_02497 [Parabacteroides johnsonii
           DSM 18315]
          Length = 532

 Score = 87.7 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 19/145 (13%)

Query: 262 EKYFSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSD 309
            +  +P +  V  ++ P +K+            A+E +Q  K G  F +LA+E       
Sbjct: 227 SRKQNPGLVRVAHVLIPFEKDSVKFGEAETLARAEEVYQKAKDGADFAELAKEYSSDAGS 286

Query: 310 ISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
              G     F    + +     + F+L   G+ +  +   FGY I  +   K     SF+
Sbjct: 287 AKRGGELPAFGVGEMVEP-FEVAAFALNTPGELSRPVKTRFGYHIIKLIEKK--GLPSFE 343

Query: 366 EVKKDIANQMRITKASEKVKEDYKR 390
           + KK  + QM   + + +    +  
Sbjct: 344 DKKKGWSRQMAQGERNFEYYGAFDE 368



 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 112/331 (33%), Gaps = 69/331 (20%)

Query: 194 YIVLNNRHVPAIADPSNAVL---TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
           Y+ L       +A+  +  L     + ++  D+YRA    +++       + E       
Sbjct: 66  YVELFKNFKLKVAEAEDLELDKTKAFKDE-LDSYRA----QLTSSYLSDKDGE------E 114

Query: 251 DELQAEYEKNKE-------KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
             ++A Y++  E        +  P  RT+ +   P  ++A EA++ ++ G+ F  +    
Sbjct: 115 AAVRAIYDRYGEVLELSHILFRLP-QRTLSKDTVPVYQKAIEAYERIQAGEDFATV---- 169

Query: 304 GKSLSDISLGSFSKEYI-------PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           GK L +    +   EY+          +  +  +S+   G  +  +  + G+ I  + + 
Sbjct: 170 GKELKEADKENVGYEYVHCLLPMQTVKAFENVAYSMP-VGSVSLPVRTTMGFHIIKIHSR 228

Query: 357 K--PSFTV------SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
           K  P           F+  K  +      T A    +E Y++ ++    G    E+++  
Sbjct: 229 KQNPGLVRVAHVLIPFE--KDSVKFGEAETLAR--AEEVYQKAKD----GADFAELAKEY 280

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAI---PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
                       AG   +G E+ A       E      F  + P      V    G Y  
Sbjct: 281 ---------SSDAGSAKRGGELPAFGVGEMVEPFEVAAFALNTPGELSRPVKTRFG-YHI 330

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           +++ E         E+      K W      
Sbjct: 331 IKLIEKK--GLPSFEDKK----KGWSRQMAQ 355


>gi|322713110|gb|EFZ04681.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 428

 Score = 87.7 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 113/369 (30%), Gaps = 57/369 (15%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN-- 189
           + D   SRLA +G+N   Y +   K +  ++V        +      +D   +       
Sbjct: 110 TMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQND 169

Query: 190 ----RSVDYIVLNNRHVPAIADPSNAVLTQW------------------FEKYKDNY--- 224
                ++ +I++     P     ++A                       +   +      
Sbjct: 170 ASTELNLRHILIALPENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGG 229

Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQ 274
                R  E   I        +K   +      +     K  +     +           
Sbjct: 230 QMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARH 289

Query: 275 LVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321
           ++       N ++A    +E    +K GK  F   A+E  +     + G    ++   I 
Sbjct: 290 ILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIF 349

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           D +  D++  L K G  +  +H SFG+ +  + + +     +    K      +   K S
Sbjct: 350 DPAFRDALTKLHK-GQISAPVHSSFGWHLIELLDTRK-VDKTDAAQKDRAYRMLMNRKFS 407

Query: 382 EKVKEDYKR 390
           E+     + 
Sbjct: 408 EEAATWMQE 416



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
               YR    K +       +E  ++I +   E+ A  ++   +  +     +  ++   
Sbjct: 124 NYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLRHILIAL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       Q++A+   +  + G  F +LA         +  G      I +   + 
Sbjct: 184 PENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S ++S  EV    I  +       ++ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   + +   +  G +    +   K  S D    +  G           P     L ++
Sbjct: 304 RLKLEEIAADIKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 360


>gi|262340880|ref|YP_003283735.1| peptidylprolyl isomerase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272217|gb|ACY40125.1| peptidylprolyl isomerase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 697

 Score = 87.7 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 97/283 (34%), Gaps = 36/283 (12%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL---FSVSGSSTVVSVGRQKVPFSSFIN 58
           LE IRK +      +  + + +  + + L   +   F    S+ +  V    + F  + +
Sbjct: 4   LEKIRKNT-----WLIFLFIGISLVFFVLDPNILLKFFSENSNVIGKVNGDNISFKEYFD 58

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
           +++  L    +  G   +S       L   +   LV    L Q    +G+++     W  
Sbjct: 59  NFQF-LKRFRE--GESDSS-------LKNDVWKLLVHEKVLTQQAMKLGIQSTKRDFWKA 108

Query: 119 IARSPL------FHGKDNKFSHDVFVSRLARE-GINEKEYIDH----------YTKMLSR 161
           I +  +      F  +        F   L     ++  +  +             K +  
Sbjct: 109 IEKQSIYSKIYDFQDEKGNMDIKKFQLYLKNLEKLSIPQAEEEKNIWNYEKKNILKKIVA 168

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP-SNAVLTQWFEKY 220
              V M + G+  S +  +   R       +DY+ +    +     P  N  +  + +K 
Sbjct: 169 KKYVEMLMYGLNTSFIEAELNSRDKNYFSIIDYVFIPYSEIEKKYHPIKNYEIYDYIKKN 228

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
           K  Y+    + +S+++   H      +  +++++  +++ K  
Sbjct: 229 KFFYKTENLRNLSFVILRSHPSLDDEKNMDNKIRKLFQELKSS 271



 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 81/249 (32%), Gaps = 28/249 (11%)

Query: 272 VEQLVFP-----------NQKEADEAFQSL-----KKGKKFIQLAEEQGKSL---SDISL 312
              ++             ++K+A+   + +     K   +F  L  ++       +  +L
Sbjct: 340 FSHILISHKEAVRSSNQRSKKKAENIAKKIYNTVQKNPYQFDALVMKKSDDFIKNNKGNL 399

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           G    E   ++   D IFS   K          FGY I  + + K        +    I 
Sbjct: 400 GWMKYEEQNNLKKLD-IFSSENKKGTIAFTETKFGYHILRIEDQKD--LKPVYQFSIIIK 456

Query: 373 NQMRITKASEKVKEDYKRL--EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
             +   K  + + ++  +   +   +   ++   +R +K  ++ L  V     ++ G   
Sbjct: 457 TLVPSKKTEDLLHKNAVQFIKQNKNSNLNTLINNARIKKYETVFLETVKNYQWNIHG--- 513

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                 ++++   + K+            +  Y+ V + +        +EE+  ++    
Sbjct: 514 LNTELDKEIINWSYEKNRKEGDFKVFYTSNRDYIIVFLSKIQKKGY-PIEEIKNNLIPLL 572

Query: 491 KTVKTAEEV 499
              K  + +
Sbjct: 573 INKKIHKNL 581


>gi|197104227|ref|YP_002129604.1| peptidyl-prolyl cis-trans isomerase family protein
           [Phenylobacterium zucineum HLK1]
 gi|196477647|gb|ACG77175.1| peptidyl-prolyl cis-trans isomerase family protein
           [Phenylobacterium zucineum HLK1]
          Length = 318

 Score = 87.7 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 57/150 (38%), Gaps = 6/150 (4%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++ + ++  Y + +      E     Q+V   + +A+   + L  G  F  LA E+ + 
Sbjct: 128 AVTENNIRGLYAEQQRVAKRQEEIRARQIVLATEADAEAVKKLLAAGASFEALAMERSRD 187

Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                +   LG F+ + +P+    +     AK G+         G  +  V + +    +
Sbjct: 188 PETRFNGGDLGYFTTDVMPEAY--ELALKTAKPGEIVGPFEVEGGVALVKVEDRRLEQPI 245

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + +  +  I   +   +  + +++   + +
Sbjct: 246 TLEAARPQIVRFLTYDRIRDLLEKLRGKAK 275



 Score = 38.0 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 82/255 (32%), Gaps = 41/255 (16%)

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-SKEYIPDVS 324
            P      +++     +   A ++LK+      +A+ +  +  D  LG    ++ + D  
Sbjct: 70  DPASDLFRRVLDEVVDQKLLAAEALKRNLDEDPVAQRRLAAARDRILGDMLIEDVVADAV 129

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             ++I  L  +                 V+  +                ++R  +     
Sbjct: 130 TENNIRGLYAEQQ--------------RVAKRQE---------------EIRARQIVLAT 160

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           + D + +++ LA G S + ++          P   F G D+       +P   +L  +  
Sbjct: 161 EADAEAVKKLLAAGASFEALAMERS----RDPETRFNGGDLGYFTTDVMPEAYELALKTA 216

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSS 501
              + +         +G    V++++    +   LE     + +     +     E++  
Sbjct: 217 KPGEIVGPFEV----EGGVALVKVEDRRLEQPITLEAARPQIVRFLTYDRIRDLLEKLRG 272

Query: 502 KANQLVLEYSKEGKN 516
           KA    L   ++G  
Sbjct: 273 KAKIESLVKPQDGAP 287


>gi|153005189|ref|YP_001379514.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028762|gb|ABS26530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 342

 Score = 87.7 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 14/169 (8%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------D 284
               E++ +   S+ EL+A Y+ +  +   PE   V +++      A            +
Sbjct: 159 LLAAEEKARGSASDAELRAWYDSHGAELAQPERLRVRRVLAKVDPGASRSDRERARERAE 218

Query: 285 EAFQSLKKGKKFIQLA--EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
                L+ G++F  +A   +  +      LG   +    D  L  + F L   G  +PVI
Sbjct: 219 RFAGRLRAGERFEAVAVSGDGPERARGGDLGLIGRGDGKDARLESAAFELPAVGARSPVI 278

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             + G+ +  +   +P    SF+E + +++N++      +   E   RL
Sbjct: 279 ELTDGFAVLELIERRPGRVPSFEEARGEVSNRLVPQLKRKAFDELLSRL 327


>gi|253998290|ref|YP_003050353.1| SurA domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253984969|gb|ACT49826.1| SurA domain protein [Methylovorus sp. SIP3-4]
          Length = 438

 Score = 87.7 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/413 (13%), Positives = 124/413 (30%), Gaps = 60/413 (14%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V +  V      +  +     + ++ G  +         L+K+IL+ L++    
Sbjct: 35  DRIVAVVDQGVVTEKELNDRIEIVSAQLEKQ-GNQLPPRNV----LEKQILERLINDRLQ 89

Query: 100 DQFIEDIGLEADHGRVWGEIARS--------PLFHGKD-------NKFSHDVFVSRL--- 141
            Q+    GL  D  ++   I R         P F            KF  D+    L   
Sbjct: 90  LQYAAQTGLRVDDDQLDKTIMRIAEQNKMGVPEFKEALAAEGIVYKKFREDIRNEILLAR 149

Query: 142 -------AREGINEKEYIDHYTKMLSRTDVVGMFVGG---MRPSNLLLDQAKRFYFENRS 191
                   R  + E E  +  T   SR D    +      +R       +  +   E   
Sbjct: 150 LREREVDNRVNVTESEVDNFLTTQSSRQDSSDEYEISHILIRAPEDGSPEDLKRLREKAE 209

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
                L             +      E  K  ++          LF    K  ++   + 
Sbjct: 210 DALKKLQAGEDFGQVSARVSDAPNALEGGKLGWKTAAQVPA---LFLEALKPMQVGQLSG 266

Query: 252 ELQAEYEKNKEKYFSP---------EIRTVEQLVFPN---------QKEADEAFQSLKKG 293
            L++    +  K             +      ++            +++ D   Q +  G
Sbjct: 267 ILRSPNGFHILKLTDRRGGNTSTMVQQTHTRHILIKTSEVLSETEAKRKIDGIKQLIDNG 326

Query: 294 KKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           + F + A+     G + +   LG  +           ++ +L + G  +  +   FG+ +
Sbjct: 327 EDFGEAAKRYSNDGSAANGGDLGWVNPGDTV-PQFEKAMNAL-QPGQISDAVRSPFGWHL 384

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             V   + +  ++ +  +     ++R  KA E  ++  + L +   +   +++
Sbjct: 385 IQVLERR-NQDMTREAERMKARQEIRQRKADEAYQDWVRELRDRAYVELRLED 436



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 100/302 (33%), Gaps = 29/302 (9%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
             +R      I        E + ++ ++  E+         +  S +   +  ++    +
Sbjct: 135 KKFREDIRNEILLARLREREVDNRVNVTESEVDNFLTTQSSRQDSSDEYEISHILIRAPE 194

Query: 282 E------------ADEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLA 326
           +            A++A + L+ G+ F Q++    +   +L    LG  +   +P + L 
Sbjct: 195 DGSPEDLKRLREKAEDALKKLQAGEDFGQVSARVSDAPNALEGGKLGWKTAAQVPALFLE 254

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKV 384
                  + G  + ++    G+ I  +++ +   T +  +    + I  +     +  + 
Sbjct: 255 --ALKPMQVGQLSGILRSPNGFHILKLTDRRGGNTSTMVQQTHTRHILIKTSEVLSETEA 312

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           K     +++ +  G    E ++R           D    +        +P  E+ +  + 
Sbjct: 313 KRKIDGIKQLIDNGEDFGEAAKRYSNDGSAANGGDLGWVNPGDT----VPQFEKAMNAL- 367

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
               P      V  P G +  +Q+ E    +D   E      +++ +  K  E       
Sbjct: 368 ---QPGQISDAVRSPFG-WHLIQVLERR-NQDMTREAERMKARQEIRQRKADEAYQDWVR 422

Query: 505 QL 506
           +L
Sbjct: 423 EL 424


>gi|325971259|ref|YP_004247450.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta sp.
           Buddy]
 gi|324026497|gb|ADY13256.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta sp.
           Buddy]
          Length = 348

 Score = 87.7 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/374 (10%), Positives = 101/374 (27%), Gaps = 88/374 (23%)

Query: 49  QKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
             +  +       +               +         ++L+ L++     Q     G+
Sbjct: 36  TPISMAELDAEVAEYQASAKAAGQDPATIDPL-------QVLNLLINNELFRQGAARDGV 88

Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
           +     +    A                                  Y +++S      + 
Sbjct: 89  KITDSMIDSAYASQKA-------------------------NLEASYNQVISDEQFAEVI 123

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVD-YIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRA 226
                     ++  ++   E   VD YI L     +      + A ++ ++ K K  + +
Sbjct: 124 TNNFGS----VEAYRKMVGEQLMVDSYIRLKKADTLNTPVSITEAEISSFYRKNKTQFVS 179

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           PE  ++S+I          I +++D+                          N+   ++ 
Sbjct: 180 PETVKLSHIY---------IPLTDDQTANA---------------------KNKATLEDV 209

Query: 287 FQSLKKGK-KFIQLAEEQGKSLSD----ISLGSFSKEYIP-----DVSLADSIFSLAKKG 336
              +K G   F +   +  +          +G  + +          +  D  F+  + G
Sbjct: 210 AAKIKAGTLTFEKAVVDYSQDPQSKSKAGDIGWLTMDNADALSGLGDAFFDVAFT-TEVG 268

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---------KKDIANQMRITKASEKVKED 387
             + V+    GY I  +     +  +   E          +  I N++   K  E   + 
Sbjct: 269 TTSSVVTSLTGYHILKILAYNETKILGLDEAISPNTTSTIRDYIKNELSSAKQQETYYKA 328

Query: 388 YKRLEEFLALGTSM 401
              L + L    ++
Sbjct: 329 INSLVDELRKSATV 342


>gi|303257438|ref|ZP_07343451.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderiales bacterium 1_1_47]
 gi|302859795|gb|EFL82873.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderiales bacterium 1_1_47]
          Length = 261

 Score = 87.7 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 7/180 (3%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E +   Y          +  I+ ++++  Y+     Y  P       ++    +EA E  
Sbjct: 84  EKQAQLYGSILSRRYASEHPITEEQVRNRYDSLLSSY-DPHEIKFRHILVKTPEEAREII 142

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKGDFTP-VI 342
           QSLK G  F  LA+E+    S    G      +   +    LA++I +L + GD  P   
Sbjct: 143 QSLKVGSDFGSLAKERSLDQSTSQNGGQIPFTNIRNVLVPGLAEAILAL-QPGDLLPVPF 201

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
               GY +  +   +     S++EVK  + +++   + +E + +  K  +      +S+D
Sbjct: 202 KSKLGYHVVLLEEKREVPFPSYEEVKPKVLSELERLQTTEFLNDLQKDAKILKVSDSSVD 261


>gi|46199933|ref|YP_005600.1| hypothetical protein TTC1631 [Thermus thermophilus HB27]
 gi|46197560|gb|AAS81973.1| hypothetical conserved protein [Thermus thermophilus HB27]
          Length = 608

 Score = 87.7 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 72/618 (11%), Positives = 165/618 (26%), Gaps = 139/618 (22%)

Query: 63  ELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           EL ++  +    +   + E      +D   L+ ++    L Q      +      V  E+
Sbjct: 51  ELDLLRLQGNDPLYAASPEGLLKTLVDTYFLEQVILTEALKQDAAR--VRVSSAEVRQEV 108

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            R      +        +   L + G  + +        L     +     G        
Sbjct: 109 NRI---REQFGLKDKAAYEQFLNQVGYTDAQLRAEVKTQLQIQKRLEQIRSG-------- 157

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                                     A P+   +  ++E +K+NYR     +        
Sbjct: 158 --------------------------AKPTEEEVRFYYEVFKENYRTEPRVK-------- 183

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                                             Q+V  ++  A+E     K G+ F  L
Sbjct: 184 --------------------------------ARQIVVDDKALAEELAAKAKAGEDFAAL 211

Query: 300 AEEQGK--SLSDISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYV 349
           A +  K  +    +LG+   E  P           + +++F+L   G   P+  G   Y 
Sbjct: 212 ARQHSKVGAEQGGALGAGPGEAEPKPVTQVVFPTEVGEAVFALKGPGVVGPIAAG-GRYY 270

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF--LALGTSMDEISRR 407
           I  V    PS   +F+EVK  +A      K +  ++   + L +   +          + 
Sbjct: 271 IVKVEEYLPSTLPAFEEVKDRVAQDAERAKGNGVLEAYLEELRKKAQVRFAEDNPYAYQN 330

Query: 408 EKIVSIDLPLVDFAG-KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
             +  ++   +  +            +   +Q L  +  +         +   +      
Sbjct: 331 PPVAKVNEKEILLSEVLQPVFSNQQTVALVQQGLGELAVQFFLPQTLENLIDRELLVEAA 390

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV------------------- 507
           +         +       ++ + +   +T +  +S+                        
Sbjct: 391 RKSG------KPFIGSKAEIAEAYLRYETRDVTASEEEARAFYSENPALFTVPASAKVIG 444

Query: 508 ------------LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG-ISQVF- 553
                          +  G +   + K    ++     +N              I++ F 
Sbjct: 445 VNFKEEAQAKAFRAAALRGGDLEALAKAQEGTVTDYGTVNPNQLPAVLDRLVFKITETFP 504

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAY 609
            GP+  V         SY V  +++ K   ++   +      Q        +   ++I  
Sbjct: 505 QGPLGEVSEVIKMEDGSYTVLLISDRKAEELKGFAQVAEEARQGAVNRKRSEKAQALIQA 564

Query: 610 LKSQYSVTVHDNLIQRYL 627
           L+ +  +      + + L
Sbjct: 565 LREEAKIENRLAEVLQAL 582



 Score = 37.7 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 55/153 (35%), Gaps = 10/153 (6%)

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
           G  ++ +++ ++    D   V+        +  A +      +   F +         + 
Sbjct: 463 GGDLEALAKAQEGTVTDYGTVN------PNQLPAVLDRLVFKITETFPQGPLGEVSEVIK 516

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           + DGSY  + I +      +   +V  + ++     K +E    KA  L+    +E K  
Sbjct: 517 MEDGSYTVLLISDRKAEELKGFAQVAEEARQGAVNRKRSE----KAQALIQALREEAKIE 572

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
             + + L A    T   ++ +++ +    +  +
Sbjct: 573 NRLAEVLQALTPKTPSQDQPNSQEQPQPEEAPA 605


>gi|323344316|ref|ZP_08084542.1| peptidyl-prolyl cis-trans isomerase [Prevotella oralis ATCC 33269]
 gi|323095045|gb|EFZ37620.1| peptidyl-prolyl cis-trans isomerase [Prevotella oralis ATCC 33269]
          Length = 713

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 87/729 (11%), Positives = 194/729 (26%), Gaps = 141/729 (19%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56
           L  IR         I + VL +    + + + + +           +  V  + +    F
Sbjct: 4   LGKIRGK-----GTILITVLGIALFAFIVEEGVRTCESRQNEQRQQIGQVLGKNIDVQEF 58

Query: 57  INSWKQELGMISQKIGFV-VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
                +   +I  + G   +N E+     +   + +  V    +++  E +GL      +
Sbjct: 59  QKLVDEYTEVIKMQQGQNNLNDEQLNQ--VKDMVWNTYVQTKIIEKEAEKLGLIVTDEEL 116

Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRL---AREGINEKEYIDHY--------- 155
                      + ++P  + +  +F  +     L     +     +  + Y         
Sbjct: 117 QNILNQGTNPMLLQTPFVNQQTGRFDANALKKFLADYRSQQTTNSQLAEQYHTIYKYWSF 176

Query: 156 -----TKMLSRTDVVGMFVGGMRPSNLLLD------------QAKRFYFENRSVDYIVLN 198
                 + +       +F   +  + +               +   F + + + D + + 
Sbjct: 177 VEKTLRQQILSQKYQSLFAHCLLSNPIEAKMAFKDENEESRIELAAFPYSSIADDKVQVT 236

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNY-----------RAPEYKRISYILFDVHEKEKKIE 247
           +  + A  D   A   Q+ E     Y           RA   K  +    D+       +
Sbjct: 237 DADLKAKYDELKARFRQYVESRDIKYVDIEVMPSSQDRAALQKDFTGYAKDLAAATDPSD 296

Query: 248 ISN-------------------DELQAEYEKN----------------------KEKYFS 266
           +                      ++ A  +                          K   
Sbjct: 297 VVKKSTSVINYLGIPVAKTAFPADIAAHLDSMSVGQTYGPVENKQDNTLNLIKLVAKQQL 356

Query: 267 PEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
           P+      +           K AD  + +LK G  F  +A+  G++         +    
Sbjct: 357 PDSIQYRMIQVGGATVDAAHKTADSIYTALKGGADFEAIAKRYGQT---GEKTWITTAQY 413

Query: 321 PDVSLADS-------IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
            +    D        + + A       +     G +I  V + K         V   I  
Sbjct: 414 QNAPSMDKDTKTYISVLNTAAVNAIENIPVVQ-GNIILQVVDRKSIIPKYTAAV---IKK 469

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
            +    + +     Y +   F +   + D+I +  +     +         +    +A I
Sbjct: 470 NI--EFSRDTYSAAYNKFSSFASTNQTADDIVKNAQKNGYKVQEAKDLTTAIHY--IAGI 525

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWK 491
               + +  VF  D+           +   + + + +  P   R L   +V   VK +  
Sbjct: 526 RGTREAVKWVFDADENDVSQMFECGDNNHLLIMVLDKIHPVGYRSLNDPQVKEIVKTEVL 585

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN----ENKFFGYD 547
             K AE++ +K N         G N     K  G  +   +Q+                 
Sbjct: 586 KDKKAEQLMNKLN---------GVNSLASAKAKGGKVSPIDQVTFSAPVFVLSTGASEPA 636

Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
               V +         P++      +F+V N      +  DK      +        + +
Sbjct: 637 LSGAVAATAKGRFSAKPVKGNAGVYLFQVVNKTDRKAKFDDKAEEQKLRQKALQYASNFM 696

Query: 608 AYLKSQYSV 616
             L     V
Sbjct: 697 NELYINAKV 705


>gi|83859697|ref|ZP_00953217.1| peptidyl-prolyl cis-trans isomerase family protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852056|gb|EAP89910.1| peptidyl-prolyl cis-trans isomerase family protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 330

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 85/257 (33%), Gaps = 23/257 (8%)

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
           +D   +      +       M    +  D       +       +L    V         
Sbjct: 68  VDDVRREAVSLGLTETPQALMPSDQVFRDTLSDLIDQR------LLALEAVARDVQDDEE 121

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
                    +    A E + +  IL +         ++++ ++  YE+        E   
Sbjct: 122 A--------RLRLAAAEERILGNILVENAIASA---VTDEAVELVYEEQSRLAPRTEEIR 170

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLAD 327
              ++   ++EADE  + L +G  F QLA +  + L    S   LG F++  I     A 
Sbjct: 171 ARHILVETREEADEVARLLAEGSDFGQLAAQVSRDLATRFSGGDLGYFTRTGIL-PGFAQ 229

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
             F+   +G  +      +G+ +  V + +     S +EV+ +I   + +    + ++  
Sbjct: 230 VAFA-TDEGAVSAPFETEYGWHVLQVMDRRLQPRESLEEVRPNIVRFLTLQGIDDLLEVL 288

Query: 388 YKRLEEFLALGTSMDEI 404
            +R       G +   +
Sbjct: 289 RERYPVTRVAGRAPSAL 305


>gi|168704077|ref|ZP_02736354.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gemmata
           obscuriglobus UQM 2246]
          Length = 309

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/356 (11%), Positives = 106/356 (29%), Gaps = 84/356 (23%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
             +   +V  +++  +      K  L +        + + + R   +  ++L ++V    
Sbjct: 26  NPNLAATVNGEQITLAEVDALLKTTLPL------TPLTAAQKRQ--MRVEVLADMVDDVL 77

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L QF+   G + D   +  ++                 F  +L  EG    ++       
Sbjct: 78  LRQFLRKNGPKVDPAEIDAQL---------------KAFGEKLKAEGKTLADFYRE---- 118

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
                  G     ++ +     Q   +                    ++ +   L  +F 
Sbjct: 119 ------TGQTEAQVKEAWTTAMQLTGYV------------------KSNATEEQLKAYFA 154

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             KD++   E  ++ +++    +                        SP  R        
Sbjct: 155 ANKDHFDRVE-VKVRHVVLRAGKSA----------------------SPAERAA------ 185

Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
            +++ +     +  GK  F   A++        +   +G   ++               K
Sbjct: 186 AKEKLEAIRADIAGGKLDFADAAKKHSHCPSGPAGGDIGVIYRKGGIVDEAFAKAAFALK 245

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            G+ + V+   FGY +  V+  KP    ++ +   D+ +       ++ + +  K+
Sbjct: 246 PGELSGVVETDFGYHLIQVTERKPGTPTTYDKSATDVLDTYSDEFRADLIAKLRKQ 301


>gi|90424494|ref|YP_532864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
 gi|90106508|gb|ABD88545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
          Length = 310

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 19/164 (11%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFP------------NQKEADEAFQSLK 291
           +  ++ D ++  Y++   K  + +    +  LVF              + +A  AF  + 
Sbjct: 131 QQAVTEDAVRKAYQEVVVKPATDQIELHLRHLVFKFPDANDAAAASATEVKAKAAFARID 190

Query: 292 KGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           KG+ F  +A +  +  +           ++  +     AD  F+L K G+ +  I  +FG
Sbjct: 191 KGEDFAAVAADLSEDPATKARGGDFDWRTRPEMGK-EYADVAFAL-KPGEVSAPIKTAFG 248

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + I  +   +P   V F++++  +A  +      + V +     
Sbjct: 249 WHIIKLEERRPRKPVEFEKIRDRVAAMVANAARFDLVDKARSAA 292


>gi|239815915|ref|YP_002944825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           S110]
 gi|239802492|gb|ACS19559.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           S110]
          Length = 261

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 4/141 (2%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           ++   I        K   +S+ E++AEY+K        E +    ++   + +A +    
Sbjct: 95  RQAILIRALFENYRKTSPVSDAEVKAEYDKFVAANGGKEYK-ARHILVETEDQAKKIMAD 153

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSF 346
           LKKG KF  +A++Q K     + G       P       ++++  L K       +   F
Sbjct: 154 LKKGAKFEDIAKKQSKDPGSGANGGDLDWANPASFVPEFSEAMIKLKKGETTPAPVKTQF 213

Query: 347 GYVIAHVSNIKPSFTVSFQEV 367
           GY I  V +++ +     +EV
Sbjct: 214 GYHIIRVDDVRQAQLPKLEEV 234


>gi|152968631|ref|YP_001333740.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238893026|ref|YP_002917760.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330009278|ref|ZP_08306494.1| PPIC-type PPIASE domain protein [Klebsiella sp. MS 92-3]
 gi|150953480|gb|ABR75510.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545342|dbj|BAH61693.1| peptidyl-prolyl cis-trans isomerase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|238774029|dbj|BAH66526.1| peptidyl-prolyl cis-trans isomerase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238774061|dbj|BAH66557.1| peptidyl-prolyl cis-trans isomerase [Klebsiella pneumoniae]
 gi|328534855|gb|EGF61397.1| PPIC-type PPIASE domain protein [Klebsiella sp. MS 92-3]
          Length = 428

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 117/371 (31%), Gaps = 61/371 (16%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191
           + D   SRLA EGIN   Y +   K +  ++V        +      ++   +   +   
Sbjct: 110 TLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQND 169

Query: 192 VDY-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
               + L++  +P   +P++  +    ++  ++         ++    +     +  +  
Sbjct: 170 ASTELNLSHILIPLPENPTSDEVAA-AQEQANSIVEQARNGANFGKLAITYSADQQALKG 228

Query: 251 --------DELQAEYEKNKEKYFSPE-----------------------------IRTVE 273
                    EL   + +        +                                  
Sbjct: 229 GQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHAR 288

Query: 274 QLVFP---------NQKEADEAFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSKEY 319
            ++            Q + ++    +K GK  F Q A+    + G +     LG  + + 
Sbjct: 289 HILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPD- 347

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           I D +  D++  L  KG  +  +H SFG+ +  + + +     +    K      +   K
Sbjct: 348 IFDPAFRDALMRL-NKGQTSGPVHSSFGWHLIELLDSR-QVDRTDAAQKDRAYRMLMNRK 405

Query: 380 ASEKVKEDYKR 390
            SE+     + 
Sbjct: 406 FSEEAATWMQE 416



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 98/306 (32%), Gaps = 27/306 (8%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I +   E++A  ++  ++  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       Q++A+   +  + G  F +LA         +  G      I +   + 
Sbjct: 184 PENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-VSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++     +S  EV    I  +        + 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           +   +++   +  G      ++  K  S D    +  G           P     L R+ 
Sbjct: 304 QAKLEQIAAEIKSGK--ITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRL- 360

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                       + P  S     + E + +R  DR          +     K +EE ++ 
Sbjct: 361 -------NKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATW 413

Query: 503 ANQLVL 508
             +   
Sbjct: 414 MQEQRA 419


>gi|119470578|ref|ZP_01613281.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Alteromonadales
           bacterium TW-7]
 gi|119446279|gb|EAW27556.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Alteromonadales
           bacterium TW-7]
          Length = 431

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/377 (14%), Positives = 112/377 (29%), Gaps = 83/377 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V +  +  S   +   +      ++       +  +   L  + ++ LVS A +
Sbjct: 28  DKVVGIVNQGVILQSEVNSIVDRVKKQAQEQ-----GQQLPKDETLRVQAMERLVSQALM 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E +GL+    ++   +A       +    S       +   G + + Y +   K +
Sbjct: 83  MQMAERMGLQISDSQLDQTLANIA--KEQGGTISD--LRRTVEASGDSFQAYREEIRKEI 138

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +   V                                    +V      S   +    + 
Sbjct: 139 TTQQV---------------------------------TRANVDRRIYISEQEVDNLLKI 165

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                ++ E   I +IL D+  +    EIS                              
Sbjct: 166 MASQGQSAEEYDIGHILIDIPNEATADEIS----------------------------AA 197

Query: 280 QKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  AD+  + L  G++F ++A       K+L    LG      +P +  A+++ S  KK 
Sbjct: 198 KTRADKVIELLNDGQEFKRIAISSSSGSKALEGGQLGWMGINEMPSL-FAEAVKS-KKKD 255

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKRL 391
                +    G+ I  V +++    V   EV+     I     +   KA   +    K  
Sbjct: 256 AIVGPLRSGAGFHIIKVQDVRGLQVVETTEVRSRHILIEPSIILSEEKARNMLAGFAK-- 313

Query: 392 EEFLALGTSMDEISRRE 408
            +  A      E+++  
Sbjct: 314 -DLRAGNADFGELAKEY 329


>gi|320161645|ref|YP_004174870.1| putative peptidylprolyl isomerase [Anaerolinea thermophila UNI-1]
 gi|319995499|dbj|BAJ64270.1| putative peptidylprolyl isomerase [Anaerolinea thermophila UNI-1]
          Length = 438

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 9/126 (7%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPD 322
            E      ++   ++ A E    L KG+ +++LA E  K  S       LG F K  +  
Sbjct: 290 EEKVWARHILVETEETAKEVLDRLNKGEDWVKLAAEYSKDTSNANKGGDLGWFGKGTMVK 349

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS--NIKPSFTVSFQEVKKDIANQ-MRITK 379
               D++++L K G+ +  +  +FGY I  +    ++P     F + K+   ++ +   K
Sbjct: 350 -EFEDAVYAL-KVGEISQPVQTTFGYHIIQLLGREVRPLTDSEFNQKKQAAYDEWLTQAK 407

Query: 380 ASEKVK 385
           +++ VK
Sbjct: 408 SADTVK 413



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 45/129 (34%), Gaps = 17/129 (13%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           +    +++  +  +++G+ D    +  +  V  VG +K+    F    K    +  Q+  
Sbjct: 31  LGTAIVLIAVIGLIVYGILDQSV-LKQNRAVAQVGNEKITVKEFQTEAKFWRYLQVQQYN 89

Query: 73  ----------------FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                             + +  A    + K++LD ++  A + Q     G+      + 
Sbjct: 90  NLASNPLLVQFYGSYLQELETSLADPQTIGKQVLDAMIEDALVAQEAAKRGITVSEEEID 149

Query: 117 GEIARSPLF 125
            E+  +  F
Sbjct: 150 KEMQEAFGF 158


>gi|292489392|ref|YP_003532279.1| survival protein SurA [Erwinia amylovora CFBP1430]
 gi|292898389|ref|YP_003537758.1| survival protein A [Erwinia amylovora ATCC 49946]
 gi|291198237|emb|CBJ45343.1| chaperone (peptidyl-prolyl cis-trans isomerase) (survival protein
           A) [Erwinia amylovora ATCC 49946]
 gi|291554826|emb|CBA22684.1| survival protein SurA precursor [Erwinia amylovora CFBP1430]
          Length = 431

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 62/383 (16%), Positives = 121/383 (31%), Gaps = 70/383 (18%)

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
               L  +IL+ LV    L Q  +  GL+    ++   IA       + NK S D   SR
Sbjct: 62  DDRTLRHQILERLVMDNILLQKAKQAGLQVSDAQLDQAIANI----AQQNKMSIDQLRSR 117

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN------RSVD 193
           LA +G+N   Y +   K ++ ++V        +      +D                ++ 
Sbjct: 118 LAYDGMNYASYREQIRKEMATSEVRNSEVRRRVTILPQEVDSLASQLASQNSAGTELNIS 177

Query: 194 YIVLNNRHVPAIADPSNAV----------------------------------------- 212
           +I+L     P      +                                           
Sbjct: 178 HILLPLPENPTQQQVDDQENLAKQLVSEAKGGADFGKLAIAHSADPQALKGGNMGWGRIQ 237

Query: 213 ------LTQWFEKYKDNYRAPEYKRISYILFDVHEKE---KKIEISNDELQAEYEKNKEK 263
                         K +   P    + + +  V++     + I ++    +    K    
Sbjct: 238 ELPSLFAQALVTAKKGDIIGPVRSGVGFHILKVNDMRGDNQSISVTEVHARHILLKPSPI 297

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
               + R   Q V  + K     F +  K     QL+++ G +     LG  S E + D 
Sbjct: 298 MTDDQARQKLQQVASDIKSGKLTFSAAAK-----QLSQDPGSANQGGDLGWSSAE-VFDP 351

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           +  D++  L KKG     +H SFG+ +  + + +          KK+ A ++   +   +
Sbjct: 352 AFRDALLRL-KKGQIGDPVHSSFGWHLIELMDTRKVDKT--DAAKKERAYRLLFNRKFAE 408

Query: 384 VKEDYKRLEEFLALGTSMDEISR 406
             + + + E   A    +D  ++
Sbjct: 409 EAQTWMQEERAAAYVKILDANAQ 431



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 101/308 (32%), Gaps = 40/308 (12%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             ++    +      G++ S+  LDQA     +   +    L +R               
Sbjct: 73  RLVMDNILLQKAKQAGLQVSDAQLDQAIANIAQQNKMSIDQLRSRL-------------A 119

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +      +YR    K ++       E  +++ I   E+ +   +   +  +     +  +
Sbjct: 120 YDGMNYASYREQIRKEMATSEVRNSEVRRRVTILPQEVDSLASQLASQNSAGTELNISHI 179

Query: 276 VFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
           + P  +             A +     K G  F +LA         +  G+     I ++
Sbjct: 180 LLPLPENPTQQQVDDQENLAKQLVSEAKGGADFGKLAIAHSADPQALKGGNMGWGRIQEL 239

Query: 324 S--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKK-----DIANQM 375
               A ++ + AKKGD    +    G+ I  V++++    ++S  EV         +  M
Sbjct: 240 PSLFAQALVT-AKKGDIIGPVRSGVGFHILKVNDMRGDNQSISVTEVHARHILLKPSPIM 298

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
              +A +K+++    ++   +   +    +++    S D    +  G           P 
Sbjct: 299 TDDQARQKLQQVASDIK---SGKLTFSAAAKQL---SQDPGSANQGGDLGWSSAEVFDPA 352

Query: 436 KEQLLFRV 443
               L R+
Sbjct: 353 FRDALLRL 360


>gi|312173557|emb|CBX81811.1| survival protein SurA precursor [Erwinia amylovora ATCC BAA-2158]
          Length = 431

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 122/378 (32%), Gaps = 60/378 (15%)

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
               L  +IL+ LV    L Q  +  GL+    ++   IA       + NK S D   SR
Sbjct: 62  DDRTLRHQILERLVMDNILLQKAKQAGLQVSDAQLDQAIANI----AQQNKMSIDQLRSR 117

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAK-RFYFENRSVDYIVLN 198
           LA +G+N   Y +   K ++ ++V        +      +D    +   +N +   + ++
Sbjct: 118 LAYDGMNYASYREQIRKEMATSEVRNSEVRRRVTILPQEVDSLASQLASQNSAGTELNIS 177

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-------- 250
           +  +P   +P+   +    E       +       +    +        +          
Sbjct: 178 HILLPLPENPTQQQVDDQ-ENLAKQLVSEAKGGADFGKLAIAHSADPQALKGGNMGWGRI 236

Query: 251 DELQAEYEKNKEKYFSPE-----------------------------IRTVEQLVFP--- 278
            EL + + +        +                                   ++     
Sbjct: 237 QELPSLFAQALVTAKKGDIIGPVRSGVGFHILKVNDMRGDNQSISVTEVHARHILLKPSP 296

Query: 279 ------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADS 328
                  +++  +    +K GK  F   A++  +     + G    +S   + D +  D+
Sbjct: 297 IMTDDQARQKLQQVASEIKSGKLTFSAAAKQLSQDPGSANQGGDLGWSSAEVFDPAFRDA 356

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           +  L KKG     +H SFG+ +  + + +          KK+ A ++   +   +  + +
Sbjct: 357 LLRL-KKGQIGDPVHSSFGWHLIELMDTRKVDKT--DAAKKERAYRLLFNRKFAEEAQTW 413

Query: 389 KRLEEFLALGTSMDEISR 406
            + E   A    +D  ++
Sbjct: 414 MQEERAAAYVKILDANAQ 431



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 101/308 (32%), Gaps = 40/308 (12%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             ++    +      G++ S+  LDQA     +   +    L +R               
Sbjct: 73  RLVMDNILLQKAKQAGLQVSDAQLDQAIANIAQQNKMSIDQLRSRL-------------A 119

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +      +YR    K ++       E  +++ I   E+ +   +   +  +     +  +
Sbjct: 120 YDGMNYASYREQIRKEMATSEVRNSEVRRRVTILPQEVDSLASQLASQNSAGTELNISHI 179

Query: 276 VFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
           + P  +             A +     K G  F +LA         +  G+     I ++
Sbjct: 180 LLPLPENPTQQQVDDQENLAKQLVSEAKGGADFGKLAIAHSADPQALKGGNMGWGRIQEL 239

Query: 324 S--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKK-----DIANQM 375
               A ++ + AKKGD    +    G+ I  V++++    ++S  EV         +  M
Sbjct: 240 PSLFAQALVT-AKKGDIIGPVRSGVGFHILKVNDMRGDNQSISVTEVHARHILLKPSPIM 298

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
              +A +K+++    ++   +   +    +++    S D    +  G           P 
Sbjct: 299 TDDQARQKLQQVASEIK---SGKLTFSAAAKQL---SQDPGSANQGGDLGWSSAEVFDPA 352

Query: 436 KEQLLFRV 443
               L R+
Sbjct: 353 FRDALLRL 360


>gi|167562430|ref|ZP_02355346.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           oklahomensis EO147]
 gi|167569612|ref|ZP_02362486.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           oklahomensis C6786]
          Length = 259

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK + S+ EL+A Y+   +     E   +  ++  N+++A +    +K G KF  L
Sbjct: 103 EDFLKKNQPSDAELKARYDDLVKSAAGREY-HLHHILVDNEQQAKDLIAKIKGGAKFEDL 161

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    +S         A +   L K       +   FG+ I  V +I
Sbjct: 162 AKQYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDAPVKTQFGWHIIRVDDI 221

Query: 357 KPSFTVSFQEVK 368
           +      F++VK
Sbjct: 222 RSITPPPFEQVK 233


>gi|313200363|ref|YP_004039021.1| sura domain-containing protein [Methylovorus sp. MP688]
 gi|312439679|gb|ADQ83785.1| SurA domain protein [Methylovorus sp. MP688]
          Length = 438

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 56/413 (13%), Positives = 124/413 (30%), Gaps = 60/413 (14%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V +  V      +  +     + ++ G  +         L+K+IL+ L++    
Sbjct: 35  DRIVAVVDQGVVTEKELNDRIEIVSAQLEKQ-GNQLPPRNV----LEKQILERLINDRLQ 89

Query: 100 DQFIEDIGLEADHGRVWGEIARS--------PLFHGKD-------NKFSHDVFVSRL--- 141
            Q+    GL  D  ++   I R         P F            KF  D+    L   
Sbjct: 90  LQYAAQTGLRVDDDQLDKTIMRIAEQNKMGVPEFKEALAAEGIVYKKFREDIRNEILLAR 149

Query: 142 -------AREGINEKEYIDHYTKMLSRTDVVGMFVGG---MRPSNLLLDQAKRFYFENRS 191
                   R  + E E  +  T   SR D    +      +R       +  +   E   
Sbjct: 150 LREREVDNRVNVTESEVDNFLTTQSSRQDSSDEYEISHILIRAPEDGSPEDLKRLREKAE 209

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
                L             +      E  K  ++          LF    K  ++   + 
Sbjct: 210 DALKKLQAGEDFGQVSARVSDAPNALEGGKLGWKTAAQVPA---LFLEALKPMQVGQLSG 266

Query: 252 ELQAEYEKNKEKYFSP---------EIRTVEQLVFPN---------QKEADEAFQSLKKG 293
            L++    +  K             +      ++            +++ D   Q +  G
Sbjct: 267 ILRSPNGFHILKLTDRRGGNTSTMVQQTHTRHILIKTSEVLSETEAKRKIDGIKQLIDNG 326

Query: 294 KKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           + F + A+     G + +   LG  +           ++ +L + G  +  +   FG+ +
Sbjct: 327 EDFGEAAKRYSNDGSAANGGDLGWVNPGDTV-PQFEKAMNAL-QPGQISDAVRSPFGWHL 384

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
             V   + +  ++ +  +     ++R  KA E  ++  + L +   +   +++
Sbjct: 385 IQVLERR-NQDMTREAERMKARQEIRQRKADEAYQDWVRELRDRAYVELRLED 436



 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 100/302 (33%), Gaps = 29/302 (9%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
             +R      I        E + ++ ++  E+         +  S +   +  ++    +
Sbjct: 135 KKFREDIRNEILLARLREREVDNRVNVTESEVDNFLTTQSSRQDSSDEYEISHILIRAPE 194

Query: 282 E------------ADEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLA 326
           +            A++A + L+ G+ F Q++    +   +L    LG  +   +P + L 
Sbjct: 195 DGSPEDLKRLREKAEDALKKLQAGEDFGQVSARVSDAPNALEGGKLGWKTAAQVPALFLE 254

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKV 384
                  + G  + ++    G+ I  +++ +   T +  +    + I  +     +  + 
Sbjct: 255 --ALKPMQVGQLSGILRSPNGFHILKLTDRRGGNTSTMVQQTHTRHILIKTSEVLSETEA 312

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           K     +++ +  G    E ++R           D    +        +P  E+ +  + 
Sbjct: 313 KRKIDGIKQLIDNGEDFGEAAKRYSNDGSAANGGDLGWVNPGDT----VPQFEKAMNAL- 367

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
               P      V  P G +  +Q+ E    +D   E      +++ +  K  E       
Sbjct: 368 ---QPGQISDAVRSPFG-WHLIQVLERR-NQDMTREAERMKARQEIRQRKADEAYQDWVR 422

Query: 505 QL 506
           +L
Sbjct: 423 EL 424


>gi|288940552|ref|YP_003442792.1| SurA domain-containing protein [Allochromatium vinosum DSM 180]
 gi|288895924|gb|ADC61760.1| SurA domain protein [Allochromatium vinosum DSM 180]
          Length = 446

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 56/400 (14%), Positives = 127/400 (31%), Gaps = 62/400 (15%)

Query: 53  FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
            S         +  ++Q+ G  +         L K++LD L+      Q  +++GL+ D 
Sbjct: 56  QSELEREIALVIPQLNQR-GTAIPPPE----QLRKQVLDRLILKHLQQQRAKELGLKVDE 110

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGG 171
             +   +          N  S D   + L   GI  +++ +     +  + +     V  
Sbjct: 111 ATLEEALQGIAG----RNGLSLDELKATLEAGGIRFEDFREDTRSQILSSRLQNQEVVRK 166

Query: 172 MRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK--------- 221
           ++ S   +D+   R        + + L +  +    +P+   + +  +K K         
Sbjct: 167 IQVSEPEVDRFLAREASRLIEREQVRLQHILIALPENPTPEQVKRAEDKAKGLVERLRSG 226

Query: 222 DNYRAPEYKR-------------------ISYILFDVHEKEKKIEISN----DELQAEYE 258
            ++ A   +                    +  ++ D+     + E+S             
Sbjct: 227 ADFAAVAVRESDGRNALEGGDLGWFEMGAVPSLVSDLAYTLAEGEVSEPLRSPSGFHIIR 286

Query: 259 KNKEKYFSPE---IRTVEQLVFPNQK---EADE------AFQSLKKGKKFIQLAE----E 302
             + K  +PE         ++    +   +AD         + +  G+ F  LA     +
Sbjct: 287 MREIKAAAPEDVTQTRARHILIRTNEIVSDADARQRLLQLRERIIGGEDFAGLARAHSDD 346

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
            G +L    LG             + + +LA  G  +      FG+ I  V   +     
Sbjct: 347 TGSALKGGELGWVDPGKTV-PEFEEQMNALA-VGATSEPFKSPFGWHILQVEERRQQSAN 404

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
               ++      ++  KA E  +E  ++L +   +   +D
Sbjct: 405 E-DILRLKAREALQRRKAEEATEEWLRQLRDEAYVEIRLD 443



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 103/307 (33%), Gaps = 31/307 (10%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278
           +++R     +I        E  +KI++S  E+     +   +    E   ++ ++     
Sbjct: 143 EDFREDTRSQILSSRLQNQEVVRKIQVSEPEVDRFLAREASRLIEREQVRLQHILIALPE 202

Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLA 326
                     + +A    + L+ G  F  +A  +     +L    LG F    +P + ++
Sbjct: 203 NPTPEQVKRAEDKAKGLVERLRSGADFAAVAVRESDGRNALEGGDLGWFEMGAVPSL-VS 261

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQMRITKASEK 383
           D  ++LA+ G+ +  +    G+ I  +  IK +      + +     I     ++ A   
Sbjct: 262 DLAYTLAE-GEVSEPLRSPSGFHIIRMREIKAAAPEDVTQTRARHILIRTNEIVSDA--D 318

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
            ++   +L E +  G     ++R     +         G    GK V     +   L  V
Sbjct: 319 ARQRLLQLRERIIGGEDFAGLARAHSDDTGSALKGGELGWVDPGKTVPEFEEQMNAL-AV 377

Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
               +P             +  +Q++E       + + +    ++  +  K  E      
Sbjct: 378 GATSEPFKSPF-------GWHILQVEERRQQSANE-DILRLKAREALQRRKAEEATEEWL 429

Query: 504 NQLVLEY 510
            QL  E 
Sbjct: 430 RQLRDEA 436


>gi|169825994|ref|YP_001696152.1| foldase protein prsA 1 [Lysinibacillus sphaericus C3-41]
 gi|168990482|gb|ACA38022.1| Foldase protein prsA 1 precursor [Lysinibacillus sphaericus C3-41]
          Length = 319

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 96/276 (34%), Gaps = 35/276 (12%)

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNY------------RAPEYKRISY-ILFDVHEK 242
           ++  + +    + ++    + ++     +               E  + S  +     + 
Sbjct: 57  MVTEKVLSDKYEVTDKEFKEAYDVTASQFGDSFSQALAESGLTEEGFKDSLRVQLLQEKA 116

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
            K   I  ++++  YE+ K +           ++  ++K A E    +K G KF  +A+E
Sbjct: 117 LKDQAIKEEDVKKYYEQMKTELNG------RHILVADEKTAKEVIAKIKGGAKFADVAKE 170

Query: 303 QGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
                        LG FS   + D    D+ ++L +    +  +  SFGY +  +++ + 
Sbjct: 171 YSTDTGSAEKGGELGWFSVGSMVD-EFNDAAYAL-ELNTLSEPVQTSFGYHVIEITDKRD 228

Query: 359 SFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
              V SF++ +++I   M          ED   L++ +A       +   +K +   L  
Sbjct: 229 VKDVGSFKDEEENIRTAMLGKLKQT--GEDQVILKDIIAKMAKDANVRTPDKNLKQSLEF 286

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
                ++            E+   +   +D     D
Sbjct: 287 FTTTSEEQAKAT-------EEAAKKAESEDKAEDTD 315


>gi|146309025|ref|YP_001189490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
 gi|145577226|gb|ABP86758.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
          Length = 430

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/413 (12%), Positives = 132/413 (31%), Gaps = 64/413 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S      ++    I ++ G  +  E      L +++L+ L+     
Sbjct: 31  DRVVAIVDNDVVMQSQLDARLREVQQTIDKR-GGALPPEHV----LSQQVLERLIIENIQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   +        + N  S + F   LAR+G++  +  D   + +
Sbjct: 86  LQIGERSGIRITDEELNQAMGTI----AQRNGMSLEQFRQALARDGLSYADARDQVRREM 141

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAK-------RFYFENRSVDYIV-LNNRHVPAIADPSN 210
             + V        ++ ++  +           +   E R  + ++ ++     +    ++
Sbjct: 142 IISRVRQRRVAERIQVTDQEVQNFLASDLGKMQLSEEFRLANILIPVSEGASSSEIQAAD 201

Query: 211 AVLTQWFEKYKD--NY-------------------------RAPEYKRISYILFDVHEKE 243
               + +++ +   ++                         + P          +  E  
Sbjct: 202 RQARELYQQLQQGADFAQLAISRSASETALEGGEMGWRKAGQLPPPFDSMISQLNPGEVT 261

Query: 244 KKIEISND-ELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
           + +       +    EK        +   V  ++            ++  +  +Q +  G
Sbjct: 262 EPVRTPGGFIILKLIEKRGGDTQVRDEVHVRHILIKPSEIRSPEETRRLVERLYQRIVAG 321

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F +LA+    + G +L+   L       +        + S    G+ +      FG+ 
Sbjct: 322 EDFAELAKSFSEDPGSALNGGDLNWIDPNALV-PEFRQ-VMSETASGELSKPFQTQFGWH 379

Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +  V   +    +  F+E  +  AN +R  K  E+++   +++ +   + T +
Sbjct: 380 VLQVMGRRATDSSAQFRE--QQAANLLRNRKYDEELQAWLRQIRDEAYVETKL 430



 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 21/235 (8%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------- 278
            + +           ++I++++ E+Q     +  K    E   +  ++ P          
Sbjct: 138 RREMIISRVRQRRVAERIQVTDQEVQNFLASDLGKMQLSEEFRLANILIPVSEGASSSEI 197

Query: 279 --NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLA 333
               ++A E +Q L++G  F QLA  +     +L    +G      +P     DS+ S  
Sbjct: 198 QAADRQARELYQQLQQGADFAQLAISRSASETALEGGEMGWRKAGQLPPP--FDSMISQL 255

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLE 392
             G+ T  +    G++I  +   +   T    EV    I  +    ++ E+ +   +RL 
Sbjct: 256 NPGEVTEPVRTPGGFIILKLIEKRGGDTQVRDEVHVRHILIKPSEIRSPEETRRLVERLY 315

Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
           + +  G    E+++     S D       G        A +P   Q++      +
Sbjct: 316 QRIVAGEDFAELAKSF---SEDPGSALNGGDLNWIDPNALVPEFRQVMSETASGE 367


>gi|319778501|ref|YP_004129414.1| Survival protein SurA precursor [Taylorella equigenitalis MCE9]
 gi|317108525|gb|ADU91271.1| Survival protein SurA precursor [Taylorella equigenitalis MCE9]
          Length = 491

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 59/458 (12%), Positives = 132/458 (28%), Gaps = 124/458 (27%)

Query: 34  LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93
           L   +    +  V  + +    F +             G   +         D+ +L +L
Sbjct: 36  LSKNATEQILAVVNDEVITMGDFASRLNTLR-----ISGQHFS---------DEAVLQSL 81

Query: 94  VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
           +    +D F ++ GL     RV   I          N  + +   +  ++  IN  EY+ 
Sbjct: 82  IDEKLMDTFAKERGLTVSDQRVAQAIQNIAA----QNGLTPEQMKAASSQYNINWDEYLK 137

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
           +  + +   D+                                     +    + +   +
Sbjct: 138 NIRQQILIEDLKAAI---------------------------------IRDRINITPHDI 164

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
             +  +                       ++ +++   E + E  +  E+YF P+  +++
Sbjct: 165 EAYLAQNPTGL--------------PKGYKEPVKV---EPRFEKRQVVEQYFVPKAISLQ 207

Query: 274 QLVFPNQK------------EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
            +     +            +A+EA   ++KG+KF  +A +        + G+       
Sbjct: 208 HIYIRVPEGSSPETVAAAKAKANEALSKIRKGQKFADVARQYSDGPEAANGGNLGIRMNE 267

Query: 322 D-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK----------------PSFTVSF 364
           D  +L  +     + G  + V   + G+ I  V   +                P      
Sbjct: 268 DWPALFMNATKNVRDGRTSGVFQAANGFHILRVVERRGLVDQRVKTVNVRLPDPPQPQLS 327

Query: 365 QEVKKDIAN-------------------QMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           ++ K  I                      +   KA EK+ +   +L+     G    +++
Sbjct: 328 EKEKAAIKEGPVEVEESHVRHILVAINPVVDEQKAYEKIVDIANQLK----SGAEFSDLA 383

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
            +        PL       V+G    A P  +Q  F +
Sbjct: 384 EKYSD-DTSAPLGGDLSWIVRGS---ADPAFDQAAFSL 417


>gi|167836282|ref|ZP_02463165.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           thailandensis MSMB43]
          Length = 259

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK + S+ EL+A Y++  +     E   +  ++  N+++A +    +K G KF  L
Sbjct: 103 EDFLKKNQPSDAELKARYDELVKNAGGREY-HLHHILVDNEQQAKDLIAKIKGGAKFEDL 161

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    +S         A +   L K       +   FG+ I  V ++
Sbjct: 162 AKQFSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDAPVKTQFGWHIIRVDDV 221

Query: 357 KPSFTVSFQEVK 368
           +      F++VK
Sbjct: 222 RSITPPPFEQVK 233


>gi|126664692|ref|ZP_01735676.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
 gi|126631018|gb|EBA01632.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
          Length = 481

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 49/408 (12%), Positives = 122/408 (29%), Gaps = 85/408 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  +         +  +  +   +          L +++LD L++ +  
Sbjct: 63  DQVVAIVDDDVILATELDARINSIVTRLQSQETTLPPRSL-----LQERVLDQLITESVQ 117

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q    +G+      +   +          N  S + F  +LA EG++ ++  +     L
Sbjct: 118 LQMAGKMGMRISDNELNETMVSIAG----RNGMSLEQFEQQLANEGVSYRDAREQIRNEL 173

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             + V                       + R V           +    ++  +  + + 
Sbjct: 174 LTSRV-----------------------QQRQV----------GSRIRVTDREVENYQQA 200

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            +         R++YI  +  +      +                               
Sbjct: 201 QQAGGGNTAEYRLAYIFIETEDPSSDASVQ----------------------------TA 232

Query: 280 QKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           + +A+   Q + +G+ F  +A    +   +L    +G   +  +P  SL   +      G
Sbjct: 233 RSKAEALRQQIVEGRDFRAVAVAESDASNALEGGDMGWRVESQLP--SLVAPVVPDLVVG 290

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---VKKDIAN---QMRITKASEKVKEDYKR 390
             + V+  S G+ +  V   +        +   V+  +      +   +A +KV++ +++
Sbjct: 291 QPSEVLQNSSGFHLVMVMEQRGGEQQKLVQQNRVRHILVQPSDAITEAEAEDKVRDLFEK 350

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
           L+     G    E+++ E   ++        G    G+ V       Q
Sbjct: 351 LQN----GADFAELAKAESDDTVSGSDGGNLGWVNPGQMVPEFEQAMQ 394



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 50/142 (35%), Gaps = 16/142 (11%)

Query: 268 EIRTVEQLVFP-----NQKEADE----AFQSLKKGKKFIQLAEEQGKSL----SDISLGS 314
           +   V  ++        + EA++     F+ L+ G  F +LA+ +           +LG 
Sbjct: 320 QQNRVRHILVQPSDAITEAEAEDKVRDLFEKLQNGADFAELAKAESDDTVSGSDGGNLGW 379

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
            +   +       ++ + A  G     +   FG+ +  V   +    +S +  + +    
Sbjct: 380 VNPGQMV-PEFEQAMQN-ATVGQIEGPVRSQFGWHLLQVQERR-QKDMSDEFRESETRQT 436

Query: 375 MRITKASEKVKEDYKRLEEFLA 396
           +   K   +++   + + +   
Sbjct: 437 LYQRKFENELQNWLREIRDEAF 458


>gi|238758995|ref|ZP_04620166.1| Chaperone surA [Yersinia aldovae ATCC 35236]
 gi|238702806|gb|EEP95352.1| Chaperone surA [Yersinia aldovae ATCC 35236]
          Length = 434

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 58/404 (14%), Positives = 124/404 (30%), Gaps = 66/404 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S      +  + + +Q+ G  V         L  +IL+ L+     
Sbjct: 26  DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQSGQQVP----DDATLRHQILERLIMDNIQ 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+      +   IA         N+ +     SRLA +G+N   Y +   K +
Sbjct: 81  LQMAKKMGITISDEALDKAIADIAA----QNRMTAAQMRSRLAADGLNYDTYREQIRKEM 136

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217
             ++V        +      ++   +      S D  + L++  +P   +PS   + Q  
Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQVGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 195

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268
           E               +    +        +           EL + + +  +     + 
Sbjct: 196 EDLAKRLVTEIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSANKGDV 255

Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291
                                             ++            + +   A   +K
Sbjct: 256 VGPIRSGVGFHILKVNDIRGADKTVSVTEVHARHILLKPSPVMTDDQARAKLTAAAADIK 315

Query: 292 KGK-KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            GK  F  +A+E     G ++    LG  S + I D +  D++  L+K G+ +  +H SF
Sbjct: 316 SGKSSFATIAKEISQDPGSAMQGGDLGWASPD-IYDPAFRDAVMKLSK-GEISAPVHSSF 373

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+ +  + + +     +    K      +   K +E+ +   + 
Sbjct: 374 GWHLIQLVDTR-QVDKTDAAQKDKAYRMLFSRKFAEEAQTWMQE 416


>gi|153005190|ref|YP_001379515.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028763|gb|ABS26531.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 320

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 22/172 (12%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK----------EADEAFQSLK----- 291
           + ++DE +  Y+++ +++  PE   V  ++F              +A  A   LK     
Sbjct: 112 KPADDEARKYYDEHLDEFVKPERARVSAVIFAAPAGSPDRAAKAGQAKNALARLKVEGPK 171

Query: 292 KGKKFIQLAEEQGKSL----SDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344
               F  LA E         +   LG  +KE +       LA++ F+L + G  + V+  
Sbjct: 172 NPLAFSNLARELSDDPVTKAAGGDLGYRTKEELSAQHSPELANAAFALREVGQESGVVET 231

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
             G+ I  +   +      F EVK  IA ++     +++     K L E  +
Sbjct: 232 PRGFAILKLGARQAPIDRPFDEVKAQIAARIGRESRTKEFDSYVKGLREKAS 283



 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 94/295 (31%), Gaps = 35/295 (11%)

Query: 345 SFGYVIAHVSNIK---PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           + G ++A    I     +F     E    I  +    +  ++  E+  R E         
Sbjct: 22  NGGPIVAKGDGISVTADAFKKKLDEQSPFIRARYSALERKKEFLENLIRFE--------- 72

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
             ++R  +   +D        KD + +E       ++L+ + F  +     D        
Sbjct: 73  -LLAREAQAKGLD--------KDPEVQETLKKIMVQKLVRQAFDSEAGKPADDEAR---- 119

Query: 462 SYMWVQIKE-SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
            Y    + E   P R R    +             A +  +   +L +E  K    F ++
Sbjct: 120 KYYDEHLDEFVKPERARVSAVIFAAPAGSPDRAAKAGQAKNALARLKVEGPKNPLAFSNL 179

Query: 521 GKNLGASLLTTN-----QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
            + L    +T            +  +     +  +  F+      +   +E    + + K
Sbjct: 180 ARELSDDPVTKAAGGDLGYRTKEELSAQHSPELANAAFALREVGQESGVVETPRGFAILK 239

Query: 576 VTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAYLKSQYSVTVHDNLIQRY 626
           +   +    +  D+  + +   + ++      DS +  L+ + S+ + D  +++ 
Sbjct: 240 LGARQAPIDRPFDEVKAQIAARIGRESRTKEFDSYVKGLREKASIEIFDAELEKI 294


>gi|251772461|gb|EES53028.1| protein of unknown function [Leptospirillum ferrodiazotrophum]
          Length = 235

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 14/205 (6%)

Query: 1   MLEIIRKAS----RTWVAKIFL--VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS 54
           MLE IR+ +    +     I L   +  +    W    +    SG   V  V    +   
Sbjct: 1   MLEWIRREAVERPKVIGVLILLTGGIFVLSMGWW--GFSQSGSSGGDVVAKVDGVPIKAK 58

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            +   +        + +   + ++  + +     +L N++         + +G+      
Sbjct: 59  DYSRDYLIMKDNYKRLLRGDLGAKILKDLNFPGLVLRNMIYRQLWIDEGKSLGIAVSDKT 118

Query: 115 VWGEIARSPLFHGKDNK-FSHDVFVSRLAREGINEKEYIDHYTKMLS--RTDVV---GMF 168
           V  EIA+ P F   +   FS D +V+ L     + + +       +   R  +       
Sbjct: 119 VVDEIAKIPFFQVGNPPVFSKDAYVTFLKETHQSAQSFERSVRLDVLVQRAQLFVRASQT 178

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVD 193
           +G +  +     QA     E   + 
Sbjct: 179 IGALPSAPSSGQQASDLASERSRIQ 203


>gi|33602778|ref|NP_890338.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           bronchiseptica RB50]
 gi|81713941|sp|Q7WCX5|PLP1_BORBR RecName: Full=Probable parvulin-type peptidyl-prolyl cis-trans
           isomerase; Short=PPIase; AltName: Full=Rotamase; Flags:
           Precursor
 gi|33577220|emb|CAE35777.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           bronchiseptica RB50]
          Length = 258

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 4/158 (2%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FI 297
           + +  +K  +++ +++AEYEK K++        V  ++  ++K A++    +K  K  F 
Sbjct: 99  MADYLQKHPVTDAQVKAEYEKIKKEQAGKMEYKVRHILVEDEKTANDLLAQVKSNKSKFD 158

Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            LA++  K       G    ++         A+++  L K       +   FG+ +  V 
Sbjct: 159 DLAKKNSKDPGSAERGGDLGWAPATNYVQPFAEAVTKLKKGQLVDKPVQTQFGWHVIQVD 218

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + +P    +  +V+  +   +R    +   K+  ++ +
Sbjct: 219 DTRPVEFPAMDQVRPQLEEMLRQQTLANYQKQLREQAK 256


>gi|255530403|ref|YP_003090775.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus
           DSM 2366]
 gi|255343387|gb|ACU02713.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus
           DSM 2366]
          Length = 455

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 89/306 (29%), Gaps = 72/306 (23%)

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
           L  ++Q+    +NS       +   IL  +++   L Q  E   +  D G+V  E+ +  
Sbjct: 39  LSDLNQQYAQFLNSGNTDDPKVKCYILQQMLAQKLLKQQAEIDSVMVDDGQVDEEVEKRM 98

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
            +  +      +     L R   +  +Y D     +    +                   
Sbjct: 99  RYQIQRAG-GQERLEQFLNR---SVLQYKDEIRPDIKEQLISNKMQ-------------- 140

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRISYILFDVHE 241
                             +      +   + ++F+ Y+ +     P    I  I+     
Sbjct: 141 ----------------AKITQDVSITPLEVKKYFDGYQKDSLPDIPTEFEIGEIVMYP-- 182

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
                +++  E Q  Y+K                        D     +K G+ F  LA+
Sbjct: 183 -----KLTKAEKQKYYDK-----------------------IDALRLRVKSGEDFAFLAK 214

Query: 302 ----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               + G +     LG F +  +         F L K G+ +PV     G+ I  V   +
Sbjct: 215 SYSEDPGSAADGGDLGFFDRTRMVK-EFTAWAFKL-KPGEMSPVFETEHGFHILQVVERR 272

Query: 358 PSFTVS 363
                +
Sbjct: 273 GEQVQA 278


>gi|294634977|ref|ZP_06713494.1| peptidylprolyl cis-trans isomerase SurA [Edwardsiella tarda ATCC
           23685]
 gi|291091576|gb|EFE24137.1| peptidylprolyl cis-trans isomerase SurA [Edwardsiella tarda ATCC
           23685]
          Length = 434

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 119/402 (29%), Gaps = 62/402 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S      K  + + +Q+ G  +      +  L  +IL+ L+     
Sbjct: 26  DKVVAIVDNGVVLESDVDGMMKS-VKLNAQQAGQQLP----DNATLRHQILERLIMDNIQ 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +GLE     +   I          N  +     SRLA +G++ K Y     K +
Sbjct: 81  LQMAKRMGLEVSDSELDNAINGIAA----QNHLTPQQLRSRLAADGLDYKAYRAQIRKEM 136

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIV-LNNRHVPAIADPSN------- 210
             ++V        +      +D   +      S +  V L++  +P   +P+        
Sbjct: 137 LISEVRNNEVRRRVTILPQEVDALAKQISSQNSGETAVNLSHILIPLPENPTQQQVSEAQ 196

Query: 211 ----------------AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
                           A L   +       +  E              E        ++ 
Sbjct: 197 QQAESLVQQLRHGADFAKLAATYSADPQALKGGEMGWGRLQELPTLFAEALQSAKKGDIV 256

Query: 255 ------------AEYEKNKEKYFSP-EIRTVEQLVF---------PNQKEADEAFQSLKK 292
                          +   ++            ++            + + +     +K 
Sbjct: 257 GPIRSGVGFHILRVNDLRGDQANVAVTEVHARHILLRTSPVMSDAQARAKLEALAAQIKS 316

Query: 293 GK-KFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G+  F Q A++          G    ++   + D +  D++  L  KG+ +  +H +FG+
Sbjct: 317 GQITFEQAAKQYSDDPGSAQKGGDLGWAVPSMYDPAFRDALMKL-NKGEISQPVHSNFGW 375

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            +  +   +     + +  K+     +   K +E+ +   + 
Sbjct: 376 HLIQLLGTR-QVDRTDEAQKERAYRILFNRKFAEEAQTWLQE 416


>gi|282858536|ref|ZP_06267707.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
 gi|282588661|gb|EFB93795.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
          Length = 715

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 79/612 (12%), Positives = 188/612 (30%), Gaps = 89/612 (14%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG-----SSTVVSVGRQKVPFSSF 56
           L  IR  S+  +  I + +  + FL   + +   S SG      S V  +  +K+    F
Sbjct: 4   LGKIR--SKGALLMIVIGLGLLGFL---VEEGARSCSGLKAEQHSQVGEILGEKISNQDF 58

Query: 57  INSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
               ++    I        ++ E      +  ++   LVS   L+   + +GL      +
Sbjct: 59  QKLIEEYQSAIKLTMQRDNLSEEELNQ--VKDQVWQQLVSNRVLEADAKKVGLTVTEQEM 116

Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
                      +A++P  + +  +F  +     +               K      +  +
Sbjct: 117 QNVLNDGTNPALAQTPFVNQQTGRFDVNALKQFIDSYN------KAKAAKSPQLEQMQSI 170

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
           +   +     L  Q     ++      ++ N                 + +         
Sbjct: 171 YNYWLFVEKNLRSQLLAQKYQGLLASCVLSNKAEAKL----------AFKDNN------- 213

Query: 228 EYKRISYILFDVHEKEK-KIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEADE 285
           E  +I          +   ++I++++L+A+YE+ K  +    E R V+ +    +  A +
Sbjct: 214 EEAQIQLAALPYSSVKDADVKITDEDLKAKYEELKGAFRQTVETRDVKYVDVQIKASAAD 273

Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSIFSLA 333
                       + L        +A + G  +    I + S + +  PD++      ++ 
Sbjct: 274 RNAIVKDMNNIQKQLASATDVASVASKSGSMIPYLGIPVSSKAYQQYPDIASKIDSLAVG 333

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI--ANQMRITKASEKVKEDYKRL 391
             G    V   +    I  V +         +++   I       +    ++ K     +
Sbjct: 334 TTGVIENVQDNTLN--IIRVLSK--------EQLPDSIQFRQIQVVANTPDEAKAKADSI 383

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
           ++ LA G     I++R    +    L     +           +   +L         ++
Sbjct: 384 QKALAGGADFVAIAKRYGQTADKTWLTGQQYEGSASMGQDNRTFLMAILK------GEVN 437

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
               VAL  G+ + +Q+ +    + + +  V+       K  + A      A     E+ 
Sbjct: 438 ATQNVALTQGN-VILQVLDKKAMKTKTVAAVIKKAIDFSKDTRAA------AYNKFSEFV 490

Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-----YDGISQVFSGPVEMV-KCFPI 565
            +     DI KN G    +   +  +     +        D +  +F      +   + +
Sbjct: 491 AKNTTLADIQKNAGKYGYSVKDLKGITTAEHYVAGIRGTRDVLKWIFDAKQGDISPLYEV 550

Query: 566 ENGLSYVVFKVT 577
            +    +V  + 
Sbjct: 551 GDNDHMMVLALN 562



 Score = 80.8 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 121/363 (33%), Gaps = 29/363 (7%)

Query: 262 EKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
            K   P+     Q+          + +AD   ++L  G  F+ +A+  G++     L   
Sbjct: 353 SKEQLPDSIQFRQIQVVANTPDEAKAKADSIQKALAGGADFVAIAKRYGQTADKTWLTGQ 412

Query: 316 SKEYIPDVSLADSIFSLA-KKGDFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIA 372
             E    +   +  F +A  KG+     + +   G VI  V + K   T +   V K   
Sbjct: 413 QYEGSASMGQDNRTFLMAILKGEVNATQNVALTQGNVILQVLDKKAMKTKTVAAVIKKAI 472

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
           +  + T+A+      Y +  EF+A  T++ +I +        +  +   G       VA 
Sbjct: 473 DFSKDTRAA-----AYNKFSEFVAKNTTLADIQKNAGKYGYSVKDLK--GITTAEHYVAG 525

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
           I     +L  +F               +   M + +        R  ++   +VK+  K 
Sbjct: 526 IRGTRDVLKWIFDAKQGDISPLYEVGDNDHMMVLALNGIHQQGYRPWDD--AEVKEMLKR 583

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENKFFGYDG 548
               +    KA  L+ +   +G N     +  GA + T NQI                  
Sbjct: 584 EVMKD---KKAEMLMAKL--KGVNSIAAAQAKGAKVSTVNQITFASPAFIQAVGSVEPAL 638

Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
              V +         P++      VF V    +    + ++  + L Q   +  +  V  
Sbjct: 639 SGAVAATAQGQFSKAPVKGNAGVYVFHVVKKAMRAGSKFNE--TQLEQQSAQQAMQLVGN 696

Query: 609 YLK 611
           Y++
Sbjct: 697 YMQ 699


>gi|221066302|ref|ZP_03542407.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni KF-1]
 gi|220711325|gb|EED66693.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni KF-1]
          Length = 263

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            + +KK  +++ E +AEY+K  E     E +    ++  ++  A      +K GKKF  +
Sbjct: 107 EDFQKKNPVTDAEAKAEYDKFVEANGGKEYK-ASHILVESEDRAKAIIAEVKAGKKFEDI 165

Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A+++ K     + G       P+       +++  L K       +   FG+ I  + + 
Sbjct: 166 AKKESKDPGSGARGGDLDWANPNNYVPEFTEALIKLKKGEMTDAPVKSQFGWHIIRMDDE 225

Query: 357 KPSFTVSFQEVKK 369
           + +    F++VK 
Sbjct: 226 RQAEMPKFEDVKP 238


>gi|55980321|ref|YP_143618.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB8]
 gi|55771734|dbj|BAD70175.1| peptidyl-prolyl cis-trans isomerse, PpiC family [Thermus
           thermophilus HB8]
          Length = 608

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 72/618 (11%), Positives = 165/618 (26%), Gaps = 139/618 (22%)

Query: 63  ELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           EL ++  +    +   + E      +D   L+ ++    L Q      +      V  E+
Sbjct: 51  ELDLLRLQGNDPLYAASPEGLLKTLVDTYFLEQVILTEALKQDAAR--VRVSSAEVRQEV 108

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            R      +        +   L + G  + +        L     +     G        
Sbjct: 109 NRI---REQFGLKDKAAYEQFLNQVGYTDAQLRAEVKTQLQIQKRLEQIRSG-------- 157

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                                     A P+   +  ++E +K+NYR     +        
Sbjct: 158 --------------------------AKPTEEEVRFYYEVFKENYRTEPRVK-------- 183

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                                             Q+V  ++  A+E     K G+ F  L
Sbjct: 184 --------------------------------ARQIVVDDKALAEELAAKAKAGEDFAAL 211

Query: 300 AEEQGK--SLSDISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYV 349
           A +  K  +    +LG+   E  P           + +++F+L   G   P+  G   Y 
Sbjct: 212 ARQHSKVGAEQGGALGAGPGEAEPKPVTQVVFPTEVGEAVFALKGPGVVGPIAAG-GRYY 270

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF--LALGTSMDEISRR 407
           I  V    PS   +F+EVK  +A      K +  ++   + L +   +          + 
Sbjct: 271 IVKVEEYLPSTLPAFEEVKDRVAQDAERAKGNGVLEAYLEELRKKAQVRFAEDNPYAYQN 330

Query: 408 EKIVSIDLPLVDFAG-KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
             +  ++   +  +            +   +Q L  +  +         +   +      
Sbjct: 331 PPVAKVNEKEILLSEVLQPVFSNQQTVALVQQGLGELAVQFFLPQTLENLIDRELLVEAA 390

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV------------------- 507
           +         +       ++ + +   +T +  +S+                        
Sbjct: 391 RKSG------KPFIGSKAEIAEAYLRYETRDVTASEEEARAFYSENPALFTVPASAKVIG 444

Query: 508 ------------LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG-ISQVF- 553
                          +  G +   + K    ++     +N              I++ F 
Sbjct: 445 VNFKEEAQAKAFRAAALRGGDLEALAKAQEGTVTDYGTVNPNQLPAVLDRLVFKITETFP 504

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAY 609
            GP+  V         SY V  +++ K   ++   +      Q        +   ++I  
Sbjct: 505 QGPLGEVSEVIKMEDGSYTVLLISDRKAEELKGFAQVAEEARQGAVNRKRSEKAQALIQA 564

Query: 610 LKSQYSVTVHDNLIQRYL 627
           L+ +  +      + + L
Sbjct: 565 LREEAKIENRLAEVLQAL 582



 Score = 37.3 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 55/153 (35%), Gaps = 10/153 (6%)

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
           G  ++ +++ ++    D   V+        +  A +      +   F +         + 
Sbjct: 463 GGDLEALAKAQEGTVTDYGTVN------PNQLPAVLDRLVFKITETFPQGPLGEVSEVIK 516

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
           + DGSY  + I +      +   +V  + ++     K +E    KA  L+    +E K  
Sbjct: 517 MEDGSYTVLLISDRKAEELKGFAQVAEEARQGAVNRKRSE----KAQALIQALREEAKIE 572

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
             + + L A    T   ++ +++ +    +  +
Sbjct: 573 NRLAEVLQALTPKTPSQDQPNSQEQPQPEEAPA 605


>gi|167893828|ref|ZP_02481230.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           pseudomallei 7894]
 gi|167918548|ref|ZP_02505639.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           pseudomallei BCC215]
          Length = 259

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK + S+ EL+A Y+   +     E   +  ++  N+++A +    +K G KF  L
Sbjct: 103 EDFLKKNQPSDTELKARYDDLVKNAGGREY-HLHHILVDNEQQAKDLIAKIKGGAKFEDL 161

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           A++  K       G       P   + +  +     +KG  T   +   FG+ I  V ++
Sbjct: 162 AKQYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDTPVKTQFGWHIIRVDDV 221

Query: 357 KPSFTVSFQEVK 368
           +      F++VK
Sbjct: 222 RSITPPPFEQVK 233


>gi|53723651|ref|YP_103096.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia mallei ATCC 23344]
 gi|121601461|ref|YP_993254.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia mallei SAVP1]
 gi|124384406|ref|YP_001029302.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia mallei NCTC 10229]
 gi|126440095|ref|YP_001059336.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 668]
 gi|126450119|ref|YP_001080762.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia mallei NCTC 10247]
 gi|134277391|ref|ZP_01764106.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 305]
 gi|166998724|ref|ZP_02264578.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei PRL-20]
 gi|167719141|ref|ZP_02402377.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           pseudomallei DM98]
 gi|167902279|ref|ZP_02489484.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|217421758|ref|ZP_03453262.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 576]
 gi|237812660|ref|YP_002897111.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei MSHR346]
 gi|238562190|ref|ZP_00440767.2| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|254177766|ref|ZP_04884421.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei ATCC 10399]
 gi|254179444|ref|ZP_04886043.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1655]
 gi|254200043|ref|ZP_04906409.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei FMH]
 gi|254206378|ref|ZP_04912730.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei JHU]
 gi|254358208|ref|ZP_04974481.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei 2002721280]
 gi|52427074|gb|AAU47667.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei ATCC 23344]
 gi|121230271|gb|ABM52789.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei SAVP1]
 gi|124292426|gb|ABN01695.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei NCTC 10229]
 gi|126219588|gb|ABN83094.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 668]
 gi|126242989|gb|ABO06082.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei NCTC 10247]
 gi|134251041|gb|EBA51120.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 305]
 gi|147749639|gb|EDK56713.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei FMH]
 gi|147753821|gb|EDK60886.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei JHU]
 gi|148027335|gb|EDK85356.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei 2002721280]
 gi|160698805|gb|EDP88775.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei ATCC 10399]
 gi|184209984|gb|EDU07027.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1655]
 gi|217395500|gb|EEC35518.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 576]
 gi|237503368|gb|ACQ95686.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei MSHR346]
 gi|238523045|gb|EEP86486.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|243065078|gb|EES47264.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei PRL-20]
          Length = 259

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK + S+ EL+A Y+   +     E   +  ++  N+++A +    +K G KF  L
Sbjct: 103 EDFLKKNQPSDTELKARYDDLVKNAGGREY-HLHHILVDNEQQAKDLIAKIKGGAKFEDL 161

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356
           A++  K       G       P   + +  +     +KG  T   +   FG+ I  V ++
Sbjct: 162 AKQYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDTPVKTQFGWHIIRVDDV 221

Query: 357 KPSFTVSFQEVK 368
           +      F++VK
Sbjct: 222 RSITPPPFEQVK 233


>gi|226227552|ref|YP_002761658.1| putative peptidyl-prolyl cis-trans isomerase [Gemmatimonas
           aurantiaca T-27]
 gi|226090743|dbj|BAH39188.1| putative peptidyl-prolyl cis-trans isomerase [Gemmatimonas
           aurantiaca T-27]
          Length = 463

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 64/473 (13%), Positives = 130/473 (27%), Gaps = 92/473 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 VG Q +  S  ++S            G  + S +     L++  L  L+    L
Sbjct: 48  DGIAAIVGDQVILVSEVMSSVNSARAQ-----GAKIESAK-DLSKLEQDALQQLIEAELL 101

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGI-NEKEYIDHYTK 157
            Q  +   +E +   +   +            FS D  F   L   G    +E+      
Sbjct: 102 VQKAKLEKIEVNDVELQSGVDSRE--KQARGNFSTDAEFRQALKENGFGTVEEWRKMQLD 159

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
              R+ +    +                           L         + +NA + + +
Sbjct: 160 AARRSKLQQEVMQ-------------------------KLQRDGKVTAVNVTNAEIDEAY 194

Query: 218 EKYKDNYRAPE----YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
           E+ K      E     ++I        + +KK  +  D L+A+ +K+             
Sbjct: 195 EEAKTQLPRKEARVGMRQIVVATKPSEDAKKKARVKIDSLRAQLDKHP------------ 242

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
                               + F  +A+ +    +      LG   +  +        +F
Sbjct: 243 --------------------EDFENIAKRESMDGTRELGGDLGWNRRGRMV-PEFDRMMF 281

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +L   G  +PV+   FGY I  V  ++P+   +         + +         +   K 
Sbjct: 282 AL-NPGVISPVLETGFGYHIIRVDRVQPAEVKA--------RHILIRPTVDSVDEGRTKL 332

Query: 391 LEEFLAL----GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
           L + +A     G S D +S +    S               +      Y+  L       
Sbjct: 333 LADSVAGAWRKGGSYDSLSVKFHDESGGEEKTI----PEYPRSELPEAYRNALEGAKLND 388

Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
                     A     ++  Q+       +  + E  T +++     K    +
Sbjct: 389 IIGPFAIPDPAAGANKFIIAQVTLLDEGGEMTVTEARTRIREHLAGEKKMRRL 441


>gi|313669248|ref|YP_004049532.1| peptidyl-prolyl cis-trans isomerase [Neisseria lactamica ST-640]
 gi|313006710|emb|CBN88180.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica
           020-06]
          Length = 359

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 83/273 (30%), Gaps = 34/273 (12%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213
           ++++R  +              +  +     E   +  +   ++           + A +
Sbjct: 92  EVITRRRLAQAVADAKANLPKGVQISDTALTEQVLMQLVNQSLIVQAGKRRNIQATEAEI 151

Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266
                +       +P  +R     I           +   +S  E+    E+  K+    
Sbjct: 152 DAVVAQNPALKNLSPAQRRELADNIIAEKVREQAVMQNSRVSEAEVDRFIEQAQKQGITL 211

Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309
           PE         + ++     E             +   + G  F  LA +  +       
Sbjct: 212 PEGEPLRQYRAQHILIKADGENAAVGAESTIRKIYDQARNGTDFSGLARQYSQDAGAGNG 271

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG FS   +       ++ +L K G  +  +   FG+ I  ++ ++ + T      ++
Sbjct: 272 GDLGWFSDGVMV-APFEAAVHAL-KPGQVSAPVRTQFGWHIIKLNEVRDAGTP-----EE 324

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            I N +R     +K ++    L   L  G  +D
Sbjct: 325 RIRNSVRQYIFQQKAEQATAELLRDLHSGAYID 357


>gi|110346942|ref|YP_665760.1| hypothetical protein Meso_4128 [Mesorhizobium sp. BNC1]
 gi|110283053|gb|ABG61113.1| hypothetical protein Meso_4128 [Chelativorans sp. BNC1]
          Length = 725

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 77/560 (13%), Positives = 177/560 (31%), Gaps = 96/560 (17%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           ++++  ++    ++S   ++         ++     A +   EN +++     ++     
Sbjct: 172 MSQEALLETVEDLVSDQLILRWAANRKPEADESFQHAIKHINENLNLE--SFADQLHTER 229

Query: 206 ADPSNAVLTQWFEKYKDNY-------------------RAP-------EYKRISYILFDV 239
              S + + ++++K K  Y                   + P       E  R S  +   
Sbjct: 230 ISISESSIREYYDKNKARYEGRSFTEVRDEIRRTLVAEQEPAFVEDYLEKLRTSASITRS 289

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSLKK 292
            +       S  EL+  Y +N +++  P    V++L F         Q+EA  A   ++ 
Sbjct: 290 FDLLDVPAPSQKELETYYRQNIDRFKLPRRAIVDELEFSASQFSPKAQQEAASALLGIQG 349

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F   A    K+         S+  +P+          +F+L   G+   V      Y
Sbjct: 350 GATFQATAGRFSKAR------FSSRAEVPEGSRNPDWDKYVFALV-PGELASVFQAGGSY 402

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR------------------ 390
            +  +  + P+   SF EV+  I   +R  K      ++ ++                  
Sbjct: 403 YVVRLQEVMPAGAKSFAEVRPTIMTTVRTQKEQRWFADNGEKTLFTIKGQRYSLRDFYKE 462

Query: 391 -----LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
                L E       +  ++       + +        DV  K +A     E  L  +  
Sbjct: 463 YEEASLREQFEGAEGLKRLANALIDRMLLVSDTYDRLLDVANKPLAD----ETRLRLLRQ 518

Query: 446 KDDPLSKDHTVALPDGSYMWV----QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
             +    D  + + D          + +   P + R    +         +   A     
Sbjct: 519 MMEQEEVDDRIEVSDEQIQAFYSDNRDRLVSPPKSR----IRYVRIGLGSSEADASRARE 574

Query: 502 KANQLVLEYSKE--GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP--- 556
           ++++   + +    G +F  + +     + T ++     +     G D + ++ S P   
Sbjct: 575 RSDEAYRKLTGAVPGSDFASVAQEYSEDVETASKGGEFPDWIGESG-DPLGELMSHPFHE 633

Query: 557 -----VEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVI 607
                       P E G S  + +VT   +       + K     YLT   ++ + + + 
Sbjct: 634 AIQDMEPGKVGKPFELGGSIYIVEVTERTLPQQLTLDEAKPFIEEYLTNQQHRSMAEELQ 693

Query: 608 AYLKSQYSVTVHDNLIQRYL 627
                +  V ++  +++ YL
Sbjct: 694 RRQLQEAKVQLYPQVLEEYL 713


>gi|260886177|ref|ZP_05736674.2| putative peptidyl-prolyl cis-trans isomerase [Prevotella tannerae
           ATCC 51259]
 gi|260850470|gb|EEX70339.1| putative peptidyl-prolyl cis-trans isomerase [Prevotella tannerae
           ATCC 51259]
          Length = 487

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 25/180 (13%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           + +KD +R        Y    +          +    A Y+  K +    ++     ++F
Sbjct: 96  KAFKDEFRT-------YRDLQLTPFMVDQAFIDSTAIALYDNMKTRLGGKDLLRPAHILF 148

Query: 278 PNQKEADEAFQSLKK------------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV-- 323
             ++ A  A +   K            G  F  LA+E    L     G       P    
Sbjct: 149 SVKQNATAAEKETAKMRADSVYQVIMNGGNFAALAKEYSGDLGSALRGGEISWIGPGATV 208

Query: 324 -SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
               ++ + L K G+ +  +   FGY I  +   K      + E++  I   ++     E
Sbjct: 209 KEFEEAAYKL-KVGEVSQPVLTPFGYHIIKMQERK--QLEPYAELRDQILYSLKQQGVDE 265


>gi|262275062|ref|ZP_06052873.1| peptidyl-prolyl cis-trans isomerase SurA [Grimontia hollisae CIP
           101886]
 gi|262221625|gb|EEY72939.1| peptidyl-prolyl cis-trans isomerase SurA [Grimontia hollisae CIP
           101886]
          Length = 432

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 127/379 (33%), Gaps = 85/379 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S    + ++ + + + +    +  +      L+++ILD L+     
Sbjct: 28  DRVVAVVNDGVILSSDID-ALEKTVALNADQ--ANLPPKDV----LEQQILDQLILEELQ 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+  D  R+   I        K+   S      RL R GI+   Y D   + +
Sbjct: 81  LQEAKRLGIRIDDTRLEQAINSI----AKERNLSVSQLQERLKRNGISWSSYRDQIRREM 136

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           + ++                          +    I +  + V ++A           + 
Sbjct: 137 TISEARNA----------------------QVRRRISILPQEVESLAS----------QL 164

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
              N    EY+ +S+I   ++E  +K                      E R +       
Sbjct: 165 NAKNLENVEYR-LSHIQLRLNEGAEK----------------------EEREI------V 195

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
            + A+   + LK G+ F  LA       K+L     G    E +P    AD I +   KG
Sbjct: 196 AETANRLVKELKDGRDFAALALANSKGPKALQGGDWGWMRLEEMP-TIFADQIKN-NGKG 253

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKRL 391
                     GY I  ++++K   +V+  EVK     I     +    A  ++ +   ++
Sbjct: 254 AIIGPFRSGVGYHILKITDVKGLKSVAVTEVKARHILIKPSIVLSDDGAKRQLNQMIAQI 313

Query: 392 EEFLALGTSMDEISRREKI 410
           ++      S ++++++   
Sbjct: 314 KK---GEKSFEDLAKQYSA 329


>gi|315127730|ref|YP_004069733.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas sp.
           SM9913]
 gi|315016244|gb|ADT69582.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas sp.
           SM9913]
          Length = 431

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/370 (12%), Positives = 112/370 (30%), Gaps = 64/370 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  V +  +  S       +      ++     N +  +   L  + ++ LV+   +
Sbjct: 28  DKVIGIVNQGVILKSEVDTIVDRVKKQAEKQ-----NQQLPKDETLRVQAIERLVNQTLM 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E +GLE    ++   +A       +      D+    +   G + + Y +   K +
Sbjct: 83  MQMAERMGLEISDSQLDQTLANMA---KEQGGTIADL-RRTIEASGESFQAYREEIRKEI 138

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFY------FENRSVDYIVLNNRHVPAIADPSNAV 212
           +   V        +  S+  +D   +         E   + +I+++     A  D S+A 
Sbjct: 139 TTQQVTRANVDRRIYVSDQEIDNLLKIMDSQGQNAEEYDIGHILIDIPSGAAADDVSSAK 198

Query: 213 LTQWFEKYKDNYRA-PEYKRISYILFD------------------VHEKEKKIEISNDE- 252
                +K  +      E+KRI+                            + ++    + 
Sbjct: 199 TRA--DKVIELLEDGQEFKRIAISSSSGSKALEGGQLGWMGINEMPSLFAEAVKGKKKDA 256

Query: 253 ------------LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQ----SLK 291
                       +    +    +           ++       ++++A          L+
Sbjct: 257 IIGPLRSGAGFHIIKVQDVRGRQVVETTEVKSRHILIKPSIILSEEKARTMLAGFVKDLR 316

Query: 292 KGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G   F +LA+E  +       G    ++       +  D++ SL K  + +      FG
Sbjct: 317 AGDVDFAELAKEHSQDPGSALKGGQYDWTDPTTYVPAFRDTLLSLDKN-EISEPFRSQFG 375

Query: 348 YVIAHVSNIK 357
           + I  + + +
Sbjct: 376 WHIVQLLDKR 385



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 107/319 (33%), Gaps = 31/319 (9%)

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
            +   + L + + + +       +  L+ Q         S   +     ++      + A
Sbjct: 55  AEKQNQQLPKDETLRVQAIERLVNQTLMMQMAERMGLEISDSQLDQTLANMAKEQGGTIA 114

Query: 212 VLTQWFEKYKDNYRA--PEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            L +  E   ++++A   E ++ I+         +++I +S+ E+    +    +  + E
Sbjct: 115 DLRRTIEASGESFQAYREEIRKEITTQQVTRANVDRRIYVSDQEIDNLLKIMDSQGQNAE 174

Query: 269 IRTVEQLVF------------PNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLG 313
              +  ++               +  AD+  + L+ G++F ++A       K+L    LG
Sbjct: 175 EYDIGHILIDIPSGAAADDVSSAKTRADKVIELLEDGQEFKRIAISSSSGSKALEGGQLG 234

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD--- 370
                 +P +  A+++    KK      +    G+ I  V +++    V   EVK     
Sbjct: 235 WMGINEMPSL-FAEAVKG-KKKDAIIGPLRSGAGFHIIKVQDVRGRQVVETTEVKSRHIL 292

Query: 371 IANQ--MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
           I     +   KA   +    K   +  A      E+++     S D       G+     
Sbjct: 293 IKPSIILSEEKARTMLAGFVK---DLRAGDVDFAELAKEH---SQDPGSALKGGQYDWTD 346

Query: 429 EVAAIPYKEQLLFRVFGKD 447
               +P     L  +   +
Sbjct: 347 PTTYVPAFRDTLLSLDKNE 365


>gi|254468048|ref|ZP_05081454.1| chaperone SurA, putative [beta proteobacterium KB13]
 gi|207086858|gb|EDZ64141.1| chaperone SurA, putative [beta proteobacterium KB13]
          Length = 428

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/432 (14%), Positives = 141/432 (32%), Gaps = 69/432 (15%)

Query: 13  VAKIFLVV-LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           + KI   + L V F        L        V  V +  +  +       + L    Q  
Sbjct: 5   LIKIIFFLCLLVNFSFVSSYQEL-----DRIVAIVNKDVITHNDLTEGVDKALLFFQQN- 58

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
               + E      ++KK+LD L+    ++ + ED  ++A    +   I          N+
Sbjct: 59  ----SIEPPEESIIEKKVLDELIEQKIIEGYAEDWNIKASQEDIDSLIQNI----LSANQ 110

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENR 190
            + D   S L ++G +  + +   +  +    V        +  S   + + K    + R
Sbjct: 111 ITLDELKSNLKQQGSSYDKLLKSLSYEIILKKVKNREISSKLNISEYEIKKHKEKMAKIR 170

Query: 191 SVDYIVLNNRHVPAIADPSNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHE------ 241
             D   L++  +   ++P+        +  E+  D  +  ++ +I+Y   D  +      
Sbjct: 171 -PDVFDLSHILIKFSSEPTAEEKKEKRKLGEEIFDKLKTDDFAKIAYEFSDSPDANEGGS 229

Query: 242 --KEKKIEISNDELQAEYEKNKEKYFSP----------------------------EIRT 271
             K K+ E+    +      +  +Y +P                            +   
Sbjct: 230 LGKLKQSELPEIFIDKLNNLSAGEYSTPFESNNGIHIIKINQVESYSESKNSSQKIKKYF 289

Query: 272 VEQLVFPNQKEA--DEAFQSLK-------KGKKFIQLAEEQGKSLSDISLGSFS--KEYI 320
           ++ +V    + A  D+  + LK        G  F  +A++  +  S  + G      E +
Sbjct: 290 IKHIVLKTSEVASEDDVIKKLKRYKNEIDSGADFSVIAKKYSEDFSAANGGEIGWINEGL 349

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
            D    D   S+  + + +       G+ I   ++ K     S + +   I  ++   + 
Sbjct: 350 LDQEF-DKQLSIIDQNEVSQPFKTDLGWHIIQYTDSKFEDLAS-ENIDNKIKYELINERT 407

Query: 381 SEKVKEDYKRLE 392
               ++ +  L+
Sbjct: 408 ELLYQDWFSALK 419


>gi|315500239|ref|YP_004089042.1| ppic-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
           excentricus CB 48]
 gi|315418251|gb|ADU14891.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
           excentricus CB 48]
          Length = 332

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 7/164 (4%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
              I + +++  Y++  +     E      ++   + EAD   + L+ G  F  +A E+ 
Sbjct: 126 DASIDDKKVKDLYDEQVKLAQKSEEIRARLILVKTRPEADNVMRQLQGGSLFEAMAMERS 185

Query: 305 KSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
                  +   +G F+ + IP+     +    AK G     +    G+ +  V   +P  
Sbjct: 186 IDQATRFNGGDMGYFTTDVIPESY--RAALMTAKPGQIAGPVQIDGGWAVFKVEERRPEQ 243

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDE 403
            ++ +E +  I + +++ +    +         EFL  G S  E
Sbjct: 244 PMTIEEARPGIVSALKLEQVRGLLGGLRDGARVEFLVKGLSSSE 287



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 74/231 (32%), Gaps = 36/231 (15%)

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           A  +LKKG    +LA+ +  +  +  LG    E   D S+ D                  
Sbjct: 90  AQAALKKGIDRTELAQRRIAAAREDILGHMLLEQSVDASIDDK----------------- 132

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
                  V ++         +  ++I  ++ + K   +     ++L+     G+  + ++
Sbjct: 133 ------KVKDLYDEQVK-LAQKSEEIRARLILVKTRPEADNVMRQLQ----GGSLFEAMA 181

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
               I         F G D+       IP              P      V + DG +  
Sbjct: 182 MERSID----QATRFNGGDMGYFTTDVIPESY---RAALMTAKPGQIAGPVQI-DGGWAV 233

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
            +++E  P +   +EE    +    K  +    +    +   +E+  +G +
Sbjct: 234 FKVEERRPEQPMTIEEARPGIVSALKLEQVRGLLGGLRDGARVEFLVKGLS 284


>gi|33594430|ref|NP_882074.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
           Tohama I]
 gi|33597875|ref|NP_885518.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           parapertussis 12822]
 gi|81713668|sp|Q7W5E0|PLP1_BORPA RecName: Full=Probable parvulin-type peptidyl-prolyl cis-trans
           isomerase; Short=PPIase; AltName: Full=Rotamase; Flags:
           Precursor
 gi|167016622|sp|P40415|PLP1_BORPE RecName: Full=Probable parvulin-type peptidyl-prolyl cis-trans
           isomerase; Short=PPIase; AltName: Full=Protein p13;
           AltName: Full=Rotamase; Flags: Precursor
 gi|33564505|emb|CAE43820.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
           Tohama I]
 gi|33574304|emb|CAE38637.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           parapertussis]
 gi|332383841|gb|AEE68688.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
           CS]
          Length = 258

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 68/158 (43%), Gaps = 4/158 (2%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFI 297
           + +  +K  +++ +++AEYEK K++        V  ++  ++K A++    +K  K KF 
Sbjct: 99  MADYLQKHPVTDAQVKAEYEKIKKEQAGKMEYKVRHILVEDEKTANDLLAQVKSNKNKFD 158

Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            LA++  K       G    ++         A+++  L K       +   FG+ +  V 
Sbjct: 159 DLAKKNSKDPGSAERGGDLGWAPATNYVQPFAEAVTKLKKGQLVDKPVQTQFGWHVIQVD 218

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + +P    +  +V+  +   +R    +   K+  ++ +
Sbjct: 219 DTRPVEFPAMDQVRPQLEEMLRQQTLANYQKQLREQAK 256


>gi|237746912|ref|ZP_04577392.1| chaperone SurA [Oxalobacter formigenes HOxBLS]
 gi|229378263|gb|EEO28354.1| chaperone SurA [Oxalobacter formigenes HOxBLS]
          Length = 468

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/480 (13%), Positives = 145/480 (30%), Gaps = 107/480 (22%)

Query: 47  GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
               +         +     + ++     N        L K++L++++  +   Q  +++
Sbjct: 59  NNDVITMGELNERIQMIESQLQKQ-----NVNLPPRAELQKQVLEHMIVESAQMQLAKEM 113

Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
           GL  D  ++   IAR      +    +   F   + R+G + + + +     ++   +  
Sbjct: 114 GLRIDDTQLDRTIARI----AESKHMTVPQFQQYIERDGTSFESHREKIRSEITMQRLRD 169

Query: 167 M-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
              V  ++ ++  +D       +                                    +
Sbjct: 170 REVVNKIQINDAEVDHLLGADSQM-----------------------------------Q 194

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
            PE  R+ +IL  + E     +I+    +                            A++
Sbjct: 195 MPEQVRLGHILIRIPENASPEQIAEKRER----------------------------AEK 226

Query: 286 AFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             Q L+ G  F Q A     +   LS   +G  S + +P +  AD++  + K G+ T +I
Sbjct: 227 VLQILQSGGDFQQNAASYSDADEGLSGGDIGWRSTDRLPKI-FADALVGV-KPGNITGII 284

Query: 343 HGSFGYVIAHVSNIK--PSFTVSFQEVKK--------------DIANQMRITKASEKVKE 386
               G+ I  V + +   +                         +   +   +A  K+ +
Sbjct: 285 KSPNGFHILKVLDKRSMSTGPEPVAGAADGNAVQQIHARHILIKVNQLVSADEAKRKLLD 344

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
             +R++       S +E+++       +       G          +P  E+ L  +   
Sbjct: 345 LKQRIQN---DSASFEELAKTYS----NDTSASRGGDLGWIYPGDTVPEFEKALVSL--- 394

Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
             P      V    G ++   + +     D  LE      K+  +  K AE       QL
Sbjct: 395 -QPGEISEPVETQFGFHLIQVLDKKTD--DVSLERKRIAAKQALRERKIAEATEEWLRQL 451



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 16/149 (10%)

Query: 268 EIRTVEQLVFPNQK--EADEAFQSL--------KKGKKFIQLAEEQGKSLS---DISLGS 314
           +      ++    +   ADEA + L             F +LA+      S      LG 
Sbjct: 318 QQIHARHILIKVNQLVSADEAKRKLLDLKQRIQNDSASFEELAKTYSNDTSASRGGDLGW 377

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
                        ++ SL + G+ +  +   FG+ +  V + K     S +  +      
Sbjct: 378 IYPGDTV-PEFEKALVSL-QPGEISEPVETQFGFHLIQVLDKKTDDV-SLERKRIAAKQA 434

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDE 403
           +R  K +E  +E  ++L +   +   +++
Sbjct: 435 LRERKIAEATEEWLRQLRDRAYVEYRLND 463


>gi|295098567|emb|CBK87657.1| Parvulin-like peptidyl-prolyl isomerase [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 428

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 111/365 (30%), Gaps = 57/365 (15%)

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
            +      L  +IL+ L+    + Q  + +G+     ++   IA       K N  + D 
Sbjct: 58  QQLPDDATLRHQILERLIMDQIVLQMGQKMGVTISDEQLDQAIANI----AKQNNITPDQ 113

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVD-- 193
             SRLA +GI+   Y +   K +  ++V        +      +D   +           
Sbjct: 114 MRSRLAYDGISYATYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTE 173

Query: 194 ------YIVLNNRHVPAIADPSNAVLTQWFEK--YKDNY--------------------- 224
                  I L        A  + +      E+    D++                     
Sbjct: 174 LNLSHILIPLPENPTSDQAAEAESQARAIVEQARNGDDFGKLAITYSADQQALKGGQMGW 233

Query: 225 -RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFP 278
            R  E   +        +K   +      +     K  +     +           ++  
Sbjct: 234 GRIQELPSLFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLK 293

Query: 279 ---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSL 325
                     + + ++    +K GK  F + A+E  +     + G    ++   I D + 
Sbjct: 294 PSPIMTDDQARAKLEQIAADIKSGKTTFDKAAKEFSQDPGSANQGGDLGWAAADIYDPAF 353

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            D++  L  KG  +P +H SFG+ +  + + + +   +    K      +   K SE+  
Sbjct: 354 RDALMKL-NKGQMSPPVHSSFGWHLIQLMDTR-NVDKTDAAQKDRAYRMLFNRKFSEEAA 411

Query: 386 EDYKR 390
              + 
Sbjct: 412 TWMQE 416



 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 79/237 (33%), Gaps = 17/237 (7%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278
             YR    K +       +E  +++ I   E+ A  ++   +  +     +  ++ P   
Sbjct: 126 ATYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTELNLSHILIPLPE 185

Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328
                     + +A    +  + G  F +LA         +  G      I +  SL   
Sbjct: 186 NPTSDQAAEAESQARAIVEQARNGDDFGKLAITYSADQQALKGGQMGWGRIQELPSLFAQ 245

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKVKE 386
             S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       ++ + 
Sbjct: 246 ALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSPIMTDDQARA 305

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
             +++   +  G +  +  +  K  S D    +  G           P     L ++
Sbjct: 306 KLEQIAADIKSGKTTFD--KAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDALMKL 360


>gi|126734461|ref|ZP_01750208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           CCS2]
 gi|126717327|gb|EBA14191.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           CCS2]
          Length = 280

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 61/171 (35%), Gaps = 6/171 (3%)

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
            Y     +R       +        ++  ++Q  Y+   E     +      L+   ++E
Sbjct: 90  EYTLSNERRALIAADVITSIADNA-VTEADVQTAYDARFENAEEIQEFNAAHLLVETEEE 148

Query: 283 ADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           A  A   + +G  F  +A +        +  +LG F    +   +  +++  L   G  +
Sbjct: 149 AIAAKARIDEGAAFADVARDVSTGPTGPNGGNLGWFGPGAMV-PTFEEAVMGL-DVGGVS 206

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
                 FG+ +A +   +     +  +++  IA +++    + ++ E  + 
Sbjct: 207 EPFETQFGWHVATLLETRVQPRPTIDDLRPQIAQELQEAAITARLDELAEA 257


>gi|74318356|ref|YP_316096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
 gi|121956487|sp|Q3SGF9|SURA_THIDA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|74057851|gb|AAZ98291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 436

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/371 (14%), Positives = 114/371 (30%), Gaps = 76/371 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +  V  V  + +        + + +  +S++     N+       L+K++L+ +V+   L
Sbjct: 36  NHIVAVVNDEVITRQELAKRYDEVVRNLSRQ-----NTPLPPRNVLEKQLLERMVTELAL 90

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q   + G+ AD   V   + R        NK       + L +EG      +D     +
Sbjct: 91  QQHARNTGVRADPTLVERALQRIAA----QNKLDMAGLQAALEKEGQT----LDGMRNTI 142

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
               ++                        R VD               S+A +  + + 
Sbjct: 143 RNELLIA-------------------RARERDVD----------NRISVSDAEIDGYLQT 173

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                   EY   S+IL  V E     +I                     R         
Sbjct: 174 QAQQGAETEY-NFSHILVSVPENASPEQIRE-------------------RRAR------ 207

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDF 338
              A++    L  G  F QL+     +   +  G+F  +      +L        + G+ 
Sbjct: 208 ---AEDILAQLAAGADFAQLSASHSDAPDALKGGNFGWRASGKLPALFVEALKPMQPGEI 264

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK---ASEKVKEDYKRLEEFL 395
           +P++    G+ I  + + +     +    +    + +  T    +    +    +L+E +
Sbjct: 265 SPLLRSGNGFHILKLVDKR-GLDATLSVTQTHARHILIKTNEITSEADARNRLLQLKERI 323

Query: 396 ALGTSMDEISR 406
             G   DE++R
Sbjct: 324 DNGVKFDELAR 334



 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 15/140 (10%)

Query: 269 IRTVEQLVFPNQK---EADE------AFQSLKKGKKFIQLAE---EQGKSLSDISLGSFS 316
                 ++    +   EAD         + +  G KF +LA    E   +     LG  +
Sbjct: 293 QTHARHILIKTNEITSEADARNRLLQLKERIDNGVKFDELARLHSEDASASKGGDLGWIN 352

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
                      ++ +L + G+ +  +   FG+ +  V   +       +  K      +R
Sbjct: 353 PGDTV-PDFEKAMNAL-QPGEVSAPVQSPFGWHLIQVLERRDQDVTQ-ERQKLMARQAIR 409

Query: 377 ITKASEKVKEDYKRLEEFLA 396
             KA E  ++  +++ +   
Sbjct: 410 ERKAEEAFQDWVRQIRDAAY 429


>gi|163788664|ref|ZP_02183109.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteriales
           bacterium ALC-1]
 gi|159875901|gb|EDP69960.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteriales
           bacterium ALC-1]
          Length = 647

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/437 (12%), Positives = 132/437 (30%), Gaps = 78/437 (17%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           + +V+L + F         FS    S ++ V  + +  S F+  + + L ++  +    +
Sbjct: 8   LIVVLLALNF--------SFSQDKDSELIKVDGESIMTSEFLRVYNKNLELVKDESQKDI 59

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
           +             L          +  + + L  D       +                
Sbjct: 60  D-----------GYLKLFTEYQLKLKEAKRLKLHEDDKYQREFL---------------- 92

Query: 136 VFVSRLAREGINEKEYIDHYTKML--SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            +  +L +  ++E +  D   K         +      +R +    D  K +  E  ++ 
Sbjct: 93  RYKKQLTKNYLSENKVTDVLVKEAYDRSNQDINASHILVRLAETETDTLKAY-NEVLALR 151

Query: 194 YIVLNNRHVPAIADPSN------AVLTQW------FEKYKDNYRAP-----EYKRISYIL 236
              ++        +  N        L  +      ++     Y  P        R  +  
Sbjct: 152 ERAISEGFDKVKTEVHNGKTIFLEDLGYFSAFKMVYDFETAAYNTPVDEISMPFRTQFGY 211

Query: 237 FDVHEKEKKI---EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
             V  KEK+     ++   +    ++ K+    PE R             ++ ++ L +G
Sbjct: 212 HVVWVKEKRQSRGTVTAAHIMVALKQ-KDSLLDPEQRI------------NDIYKKLNQG 258

Query: 294 KKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F  LA++     S  + G     F    +         F L   GD +     ++G+ 
Sbjct: 259 ENFDALAKQFSDDKSSSNKGGKLSPFKSGQLSSEEFESQAFGLKADGDVSKPFKTAYGWH 318

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           I     +KP     F+++K  +  +++    S+ +        +      S D  ++   
Sbjct: 319 IVKRIKLKP--IQDFKDLKPSLEVKVKRDSRSKLINAAMVSELKKRYN-MSYDADAKAYF 375

Query: 410 IVSIDLPLVDFAGKDVK 426
              I       + +  +
Sbjct: 376 KSIITKDFFARSWRLPE 392



 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 3/140 (2%)

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           ++A Y KNK KY   +   V      ++       + +KKGK    + +          +
Sbjct: 494 IEAYYSKNKSKYQWKDRVEVVMASSADESHMKSVLKMMKKGKSEEAINKALNTDAKQNVI 553

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
            + S   I D  L       AKKG  + +   +  + +  V  + P+   + +E K ++ 
Sbjct: 554 FTKSTYAIDDDKLPTE--FKAKKG-LSKIYKHNEAFHVIDVKALLPAGNKTLEEAKGNVI 610

Query: 373 NQMRITKASEKVKEDYKRLE 392
           N  +    +  +K+ YKR +
Sbjct: 611 NDYQSEIEASWIKDLYKRFK 630



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 116/335 (34%), Gaps = 36/335 (10%)

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKEADEAFQ 288
           + Y          + ++++  ++  Y++      S +      ++      + +  +A+ 
Sbjct: 92  LRYKKQLTKNYLSENKVTDVLVKEAYDR------SNQDINASHILVRLAETETDTLKAYN 145

Query: 289 SL------KKGKKFIQLAEE--QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
            +         + F ++  E   GK++    LG FS   +       + ++     + + 
Sbjct: 146 EVLALRERAISEGFDKVKTEVHNGKTIFLEDLGYFSAFKMV-YDFETAAYN-TPVDEISM 203

Query: 341 VIHGSFGYVIAHVSNIKPSF-TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
                FGY +  V   + S  TV+   +   +  +  +    +++ + YK+L +    G 
Sbjct: 204 PFRTQFGYHVVWVKEKRQSRGTVTAAHIMVALKQKDSLLDPEQRINDIYKKLNQ----GE 259

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           + D ++++    S D    +  GK    K  +     E+   + FG              
Sbjct: 260 NFDALAKQF---SDDKSSSNKGGKLSPFK--SGQLSSEEFESQAFGLKADGDVSKPFKTA 314

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            G   W  +K       +  +++   ++   K    ++ +++     + +      ++  
Sbjct: 315 YG---WHIVKRIKLKPIQDFKDLKPSLEVKVKRDSRSKLINAAMVSELKKRYNM--SYDA 369

Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
             K    S++T +   R     + F  D    +FS
Sbjct: 370 DAKAYFKSIITKDFFARSWRLPEDFQKD--KTIFS 402


>gi|71908519|ref|YP_286106.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
 gi|71848140|gb|AAZ47636.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
          Length = 263

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 5/157 (3%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           + +  K   IS+ +L+AEYE  K    S E +    ++   + +A      L KG+KF +
Sbjct: 107 LSDYVKAHPISDAQLKAEYELIKNNLGSTEYK-ARHVLVEKEDDAKAIIAKLDKGEKFSE 165

Query: 299 LAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           LA+   + G       LG  S          +++  L K       +   FGY +  + +
Sbjct: 166 LAKQSKDPGSKDKGGELGWSSPNAYVKP-FGEALGKLKKGEYTKTPVKSDFGYHVIQLDD 224

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +P     F +VK  +  +    +    VKE   + +
Sbjct: 225 SRPMTPPPFDQVKPQLQQRAGQQQVENLVKELRGKAK 261


>gi|53719054|ref|YP_108040.1| putative exported isomerase [Burkholderia pseudomallei K96243]
 gi|76809971|ref|YP_333855.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia pseudomallei 1710b]
 gi|126452457|ref|YP_001066604.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1106a]
 gi|167738143|ref|ZP_02410917.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 14]
 gi|167815330|ref|ZP_02447010.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 91]
 gi|167823737|ref|ZP_02455208.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 9]
 gi|167845286|ref|ZP_02470794.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei B7210]
 gi|167910520|ref|ZP_02497611.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 112]
 gi|226197257|ref|ZP_03792834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pakistan 9]
 gi|242315812|ref|ZP_04814828.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1106b]
 gi|254189167|ref|ZP_04895678.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254198249|ref|ZP_04904671.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei S13]
 gi|254259998|ref|ZP_04951052.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1710a]
 gi|254297327|ref|ZP_04964780.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 406e]
 gi|52209468|emb|CAH35420.1| putative exported isomerase [Burkholderia pseudomallei K96243]
 gi|76579424|gb|ABA48899.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           pseudomallei 1710b]
 gi|126226099|gb|ABN89639.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1106a]
 gi|157807500|gb|EDO84670.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 406e]
 gi|157936846|gb|EDO92516.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169654990|gb|EDS87683.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei S13]
 gi|225930636|gb|EEH26646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pakistan 9]
 gi|242139051|gb|EES25453.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1106b]
 gi|254218687|gb|EET08071.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1710a]
          Length = 259

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK + S+ EL+A Y+   +     E   +  ++  N+++A +    +K G KF  L
Sbjct: 103 EDFLKKNQPSDTELKARYDDLVKNAGGREY-HLHHILVDNEQQAKDLIAKIKGGAKFEDL 161

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++  K       G    +S         A +   L K       +   FG+ I  V ++
Sbjct: 162 AKQYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDAPVKTQFGWHIIRVDDV 221

Query: 357 KPSFTVSFQEVK 368
           +      F++VK
Sbjct: 222 RSITPPPFEQVK 233


>gi|260596477|ref|YP_003209048.1| peptidyl-prolyl cis-trans isomerase SurA [Cronobacter turicensis
           z3032]
 gi|260215654|emb|CBA27953.1| Chaperone surA [Cronobacter turicensis z3032]
          Length = 440

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 114/386 (29%), Gaps = 65/386 (16%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +IL+ L+    + Q  + +G++    ++
Sbjct: 57  LMQSVKLNANQAGQQLP--------DDSTLRHQILERLIMDQIMLQMGQKMGVKISDDQL 108

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y     K +  ++V        +  
Sbjct: 109 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRAQIRKEMIISEVRNNEVRRRVTI 164

Query: 175 SNLLLDQAKRFYFENRSVDY------IVLNNRHVPAIADPSNAVLTQW------------ 216
               ++                    I++     P     S A                 
Sbjct: 165 LPQEVETLAEQVGNQNDASTELNLSHILIPLPENPTADQVSEAETQARSIIDQARNGGDF 224

Query: 217 ------FEKYKDNY--------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                 +   +           R  E   +        +K   I      +     K  +
Sbjct: 225 GKLAITYSADQQALKGGQMGWGRIQELPSVFAQALSTAKKGDVIGPIRSGVGFHIIKVND 284

Query: 263 KYFSPE-----IRTVEQLVFP---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSL 307
                +           ++            +++ +E    +K GK  F Q A E  +  
Sbjct: 285 LRGQSQTVSVTEVHARHILLKPSPIMTDQQARQKLEEIAADIKSGKTTFAQAAREFSQDP 344

Query: 308 SDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              + G    ++   I D +  D++ +L+K G  +  +H SFG+ +  + + + S     
Sbjct: 345 GSANQGGDLGWAAADIYDPAFRDALMNLSK-GQMSTPVHSSFGWHLIELLDTRKSDRTDA 403

Query: 365 QEVKKDIANQMRITKASEKVKEDYKR 390
            + K      +   K SE+     + 
Sbjct: 404 AQ-KDRAYRMLFNRKFSEEAATWMQE 428



 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 83/243 (34%), Gaps = 25/243 (10%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YRA   K +       +E  +++ I   E++   E+   +  +     +  ++ P 
Sbjct: 136 NYNTYRAQIRKEMIISEVRNNEVRRRVTILPQEVETLAEQVGNQNDASTELNLSHILIPL 195

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         +  G      I +  S+ 
Sbjct: 196 PENPTADQVSEAETQARSIIDQARNGGDFGKLAITYSADQQALKGGQMGWGRIQELPSVF 255

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKK-----DIANQMRITKA 380
               S AKKGD    I    G+ I  V++++  S TVS  EV         +  M   +A
Sbjct: 256 AQALSTAKKGDVIGPIRSGVGFHIIKVNDLRGQSQTVSVTEVHARHILLKPSPIMTDQQA 315

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
            +K++E    ++   +  T+  + +R     S D    +  G           P     L
Sbjct: 316 RQKLEEIAADIK---SGKTTFAQAAREF---SQDPGSANQGGDLGWAAADIYDPAFRDAL 369

Query: 441 FRV 443
             +
Sbjct: 370 MNL 372


>gi|163802667|ref|ZP_02196558.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Vibrio sp. AND4]
 gi|159173555|gb|EDP58375.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Vibrio sp. AND4]
          Length = 427

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 134/404 (33%), Gaps = 90/404 (22%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            KI+  ++    L  G++ A   +      V V    +  S    + K       Q  G 
Sbjct: 1   MKIWKSLIVTTLLSCGVTAAPAEL--DKVAVIVNDGVILQSDIDTAMKTLQANARQS-GK 57

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            + S       L +++++ L+      Q  + IG+  D  R+   IA       ++N  S
Sbjct: 58  SLPSAGV----LKEQVVEKLIIDTLQGQEAKRIGVRIDDNRLNQAIAEI----ARNNNQS 109

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            +   + +  EG+N  E+ +   K ++ ++     V                    R ++
Sbjct: 110 VEQLAASVQMEGLNYSEFREQIRKEIAASEARNALV-------------------RRRIN 150

Query: 194 YIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
            +      +    A  +NA +                 +I +I     + + K E+    
Sbjct: 151 ILPAEVDSLTDQLAQETNATVQ---------------YKIGHIQLRFSDDKDKSEV---- 191

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSD 309
                                      + EA+   + LK G  F ++A       K+L  
Sbjct: 192 ---------------------------EAEANALVKKLKAGADFSEMAYTYSKGPKALQG 224

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
              G   KE +P    AD I  +  KG+         G+ I  + ++K   TV+  EV  
Sbjct: 225 GDWGWMRKEEMP-TIFADQI-KMQNKGNIIGPFRSGIGFHILKIEDVKGLETVAVTEVNA 282

Query: 370 D---IANQ--MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
               I     +    A +++ E  +R++   A   S  +++ + 
Sbjct: 283 RHILIKPTVILSDDGAKKELNEFIRRIK---AGEASFGQLATQY 323


>gi|156935427|ref|YP_001439343.1| peptidyl-prolyl cis-trans isomerase SurA [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156533681|gb|ABU78507.1| hypothetical protein ESA_03285 [Cronobacter sakazakii ATCC BAA-894]
          Length = 428

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 114/386 (29%), Gaps = 65/386 (16%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +IL+ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNANQAGQQLP--------DDSTLRHQILERLIMDQIMLQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y     K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRAQIRKEMIISEVRNNEVRRRVTI 152

Query: 175 SNLLLDQAKRFYFENRSVDY------IVLNNRHVPAIADPSNAVLTQW------------ 216
               ++                    I++     P     S A                 
Sbjct: 153 LPQEVETLAEQVGNQNDASTELNLSHILIPLPENPTADQVSEAEAQARSIIDQARNGGDF 212

Query: 217 ------FEKYKDNY--------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                 +   +           R  E   +        +K   I      +     K  +
Sbjct: 213 GKLAITYSADQQALKGGQMGWGRIQELPSVFAQALSTAKKGDVIGPIRSGVGFHIIKVND 272

Query: 263 KYFSPE-----IRTVEQLVFP---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSL 307
                +           ++            +++ +E    +K GK  F Q A E  +  
Sbjct: 273 LRGQSQTVSVTEVHARHILLKPSPIMTDQQARQKLEEIAADIKSGKTTFAQAAREFSQDP 332

Query: 308 SDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              + G    ++   + D +  D++ SL+K G  +  +H SFG+ +  + + + S     
Sbjct: 333 GSANQGGDLGWAAADVYDPAFRDALMSLSK-GQMSTPVHSSFGWHLIELLDTRKSDRTDA 391

Query: 365 QEVKKDIANQMRITKASEKVKEDYKR 390
            + K      +   K SE+     + 
Sbjct: 392 AQ-KDRAYRMLFNRKFSEEAATWMQE 416



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 83/243 (34%), Gaps = 25/243 (10%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YRA   K +       +E  +++ I   E++   E+   +  +     +  ++ P 
Sbjct: 124 NYNTYRAQIRKEMIISEVRNNEVRRRVTILPQEVETLAEQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         +  G      I +  S+ 
Sbjct: 184 PENPTADQVSEAEAQARSIIDQARNGGDFGKLAITYSADQQALKGGQMGWGRIQELPSVF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKK-----DIANQMRITKA 380
               S AKKGD    I    G+ I  V++++  S TVS  EV         +  M   +A
Sbjct: 244 AQALSTAKKGDVIGPIRSGVGFHIIKVNDLRGQSQTVSVTEVHARHILLKPSPIMTDQQA 303

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
            +K++E    ++   +  T+  + +R     S D    +  G           P     L
Sbjct: 304 RQKLEEIAADIK---SGKTTFAQAAREF---SQDPGSANQGGDLGWAAADVYDPAFRDAL 357

Query: 441 FRV 443
             +
Sbjct: 358 MSL 360


>gi|145300233|ref|YP_001143074.1| chaperone surA [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853005|gb|ABO91326.1| chaperone surA [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 432

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/432 (13%), Positives = 136/432 (31%), Gaps = 60/432 (13%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K  + +L           A  +      V++V  + V  +S   +  Q++   +Q+ G  
Sbjct: 3   KTLISLLTAGLFGAMSQGAFAAPELMDKVLAVVNKDVVLASQQEALVQKVKSSAQESGQS 62

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           +         L K+ LD L+  +   Q  +  GL+    ++   I         DNK + 
Sbjct: 63  LP----DDATLRKQALDRLIQESLQLQLADRQGLKISDTQLEQAIQSIAA----DNKMTL 114

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLS-----RTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           D   ++LAREG+   +Y +   + +      R  V        +    ++D   +   + 
Sbjct: 115 DQLRAQLAREGLTYAQYREEVRREILMNEVRRNQVRRRINISDQEVKQVVDILAKQGQQQ 174

Query: 190 RSVDY----IVLNNRHVPAIADPSNAVLTQWFEKYKD--NYR-----------APEYKRI 232
           +        I L +       + + + + +     K   ++R           A E    
Sbjct: 175 QQYHVGHIQIALPDNPSAEQLNAAKSKIERILAALKQGADFRKLAIAESNGPKALEGGDW 234

Query: 233 SYILFDVHEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQLVF 277
           S++            +                   +   ++   ++           ++ 
Sbjct: 235 SWMSPQEMPTLMAEAVQGAAKGDIVGPLRSGAGLHIVKVFDAKGQQQVLQTEVKARHILI 294

Query: 278 P-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLGS---FSKEYIPDVS 324
                 ++++A    D     +K GK  F  LAE+  +       G    +S   +    
Sbjct: 295 KPSIILSEEKAKGMLDGILHDIKSGKATFASLAEKYSEDPGSAVQGGELGWSDPNVYVPE 354

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             D +  L K G+ +     + G+ I  +   +     S  + ++     +   + +E+ 
Sbjct: 355 FRDMVNRL-KPGELSAPFRTTHGWHIVQLEERRSQDATSKAQ-EQRAYQLIFNRRFTEES 412

Query: 385 KEDYKRLEEFLA 396
           +     L +   
Sbjct: 413 QAWLDELRDEAY 424


>gi|238028597|ref|YP_002912828.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia glumae BGR1]
 gi|237877791|gb|ACR30124.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia glumae BGR1]
          Length = 451

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/411 (12%), Positives = 110/411 (26%), Gaps = 69/411 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V   +  R      ++L+ +V     
Sbjct: 40  DEVVAVVNNDVITGRELDQRVDLIARRLRQQKAPVPPIDELRM-----QVLNQMVLERIQ 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G+  D   V   + R        N  S D + +RL  EG+    ++      L
Sbjct: 95  VQKAKEDGIVVDDAMVQATLQRLAA----ANNMSLDQYRARLEAEGVPWNIFVSDARTEL 150

Query: 160 SRTDV---------------VGMFVGGMRPSNLLLDQAKRFY---------FENRSVDYI 195
             + +               V  ++   R  N    Q  R                +D  
Sbjct: 151 MLSRLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVAAPQNAPETQIDAA 210

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAPEYKRISYILFDVHEKEKK 245
                 +   A    A   +  +   +           ++ P       +      +  +
Sbjct: 211 RKKAEGLLKQALAPGADFERLAKNNSEAKDAKSGGDLGFKPPGSLPADVVQAVAQLRPGQ 270

Query: 246 IEISNDELQAEYEKNKEKYFSPEI-----------RTVEQLVFPNQKEADEAFQS----- 289
           +  +   +   +E  +     P               V  ++    +   EA        
Sbjct: 271 VNPALIRVPDGFEIVRLVDRRPAQGTSAASPKIVQTHVRHILLRVGEGKSEAQARQQLID 330

Query: 290 ----LKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
               ++ G  F   A    + G +     LG  S           ++ SL + G  +  +
Sbjct: 331 IRNKVEAGGDFASFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNSL-QDGQISNPV 388

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
              +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 389 RTEYGYHLIQVLGRRDAEG-SIQQQMDIARQAIGQRKAEQAYADWLRELRD 438


>gi|54296347|ref|YP_122716.1| hypothetical protein lpp0376 [Legionella pneumophila str. Paris]
 gi|81679579|sp|Q5X877|SURA_LEGPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|53750132|emb|CAH11524.1| hypothetical protein lpp0376 [Legionella pneumophila str. Paris]
          Length = 429

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/441 (12%), Positives = 129/441 (29%), Gaps = 71/441 (16%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +  V  L  G+  A         V  V    +  S      +     I  +     N + 
Sbjct: 5   IALVCALFSGICFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 59

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                L K++L +L+      Q  +  G+  ++  +   I +        N  +      
Sbjct: 60  PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 115

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNLLLDQAKRFYFE---------- 188
            + ++GI+ +EY  +  K +  + V    VG  +  +N  ++Q  +              
Sbjct: 116 EITKQGISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKNAGRIENSNLTYHL 175

Query: 189 ------------NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY------------ 224
                        + +    +   ++               E+    +            
Sbjct: 176 KNIVIPLSEEPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHL 235

Query: 225 -RAPEYKRISYILFDVHEKEKKIEISND----ELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
              PE      +   V +    I   N     +L A   +N+    +     V  ++   
Sbjct: 236 AELPEVFAKEVVHMKVGQVAGPIRAGNGFHLIKLVAVGGENQRHVIT--QTHVRHILLKP 293

Query: 280 Q---------KEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLA 326
                     K+ +  ++ ++ GK F  +A++     +       LG  +   +      
Sbjct: 294 DASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELV-PEFE 352

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKV 384
            ++ SL      +  +   +G+ +  V   +        E   K+ +   ++  K  E V
Sbjct: 353 KTMNSLPLH-KVSKPVKTQYGWHLIEVIARR---QKDDSEAFKKQQVRQFLQQRKFVEAV 408

Query: 385 KEDYKRLEEFLALGTSMDEIS 405
           +   + L     +     +++
Sbjct: 409 QNWQQHLRSQAYINIVDKDLA 429



 Score = 56.9 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 96/298 (32%), Gaps = 32/298 (10%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278
             YR    K +           K I ++N++++   +       S     ++ +V P   
Sbjct: 125 QEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKNAGRIENSNLTYHLKNIVIPLSE 184

Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLA 326
                     + EA+     +KKG+ F +LA E+     +L    LG      +P+V  A
Sbjct: 185 EPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEV-FA 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD--IANQMRITKASEKV 384
             +  + K G     I    G+ +  +  +          V     + + +    AS   
Sbjct: 244 KEVVHM-KVGQVAGPIRAGNGFHLIKLVAVGGENQR---HVITQTHVRHILLKPDASMVP 299

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
            E  K++        S  + +   K  S+D       G          +P  E+ +  + 
Sbjct: 300 SEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSL- 358

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV--LTDVKKDWKTVKTAEEVS 500
                    H V+ P  +     + E I  R +   E      V++  +  K  E V 
Sbjct: 359 -------PLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQ 409


>gi|213161291|ref|ZP_03347001.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 399

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 109/339 (32%), Gaps = 60/339 (17%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENR 190
           + D   SRLA +G+N   Y +   K +  ++V        +      +D   +    +N 
Sbjct: 110 TMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQND 169

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIEIS 249
           +   + L++  +    +P++  +     + +      E +    +    +     +  + 
Sbjct: 170 ASTELNLSHILIALPENPTSEQVND--AQRQAESIVEEARNGADFGKLAITYSADQQALK 227

Query: 250 N--------DELQAEYEKNKEKYFSPE-----------------------------IRTV 272
                     EL   + +        +                                 
Sbjct: 228 GGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHA 287

Query: 273 EQLVFP-----NQKEA----DEAFQSLKKGKK-FIQLAEEQGKSLSDISLGS---FSKEY 319
             ++       N ++A    +E    +K GK  F   A+E  +     + G    ++   
Sbjct: 288 RHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPD 347

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           I D +  D++  L K G  +  +H SFG+ +  + + + 
Sbjct: 348 IFDPAFRDALTKLHK-GQISAPVHSSFGWHLIELLDTRK 385



 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
               YR    K +       +E  ++I +   E+ A  ++   +  +     +  ++   
Sbjct: 124 NYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIAL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       Q++A+   +  + G  F +LA         +  G      I +   + 
Sbjct: 184 PENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S ++S  EV    I  +       ++ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   + +   +  G +    +   K  S D    +  G           P     L ++
Sbjct: 304 RLKLEEIAADIKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 360


>gi|104779703|ref|YP_606201.1| peptidyl-prolyl cis-trans isomerase A [Pseudomonas entomophila L48]
 gi|95108690|emb|CAK13384.1| putative peptidyl-prolyl cis-trans isomerase A [Pseudomonas
           entomophila L48]
          Length = 439

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/409 (12%), Positives = 132/409 (32%), Gaps = 65/409 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S       +    I+++ G V  +       L++++L+ L+     
Sbjct: 31  DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPA-----GALEQQVLERLIVENLQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   +        + N  S + F + LA +G++  +  +   + +
Sbjct: 86  LQIGERSGIRITDEELNQAVGTI----AQRNGMSLEQFRAALAHDGLSYDDAREQIKREM 141

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAK-------RFYFENRSVDYIVLNNRHVPAIA-DPSN 210
             + V        ++ S   +           +   E R  + ++       + A   + 
Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLNSDLGKMQLSEEYRLANILIPTPESANSDAIQAAA 201

Query: 211 AVLTQWFEKYKD--NY-------------------------RAPEYKRISYILFDVHEKE 243
                 +++ K   ++                         + P             +  
Sbjct: 202 RQAGDVYQQLKQGADFARLAIARSASENALEGGEMGWRKAGQLPPDFAKMLSSMATGDVT 261

Query: 244 KKIEISNDELQAEYEKNKEKYFS--PEIRTVEQLVF---------PNQKEADEAFQSLKK 292
           + I I N  +  + E+ +    S   +   V  ++            ++ A+  +  +K 
Sbjct: 262 QPIRIPNGFIILKLEEKRGGESSVLRDEVHVRHILIKPSEIRSDKATEQLAERLYDRIKN 321

Query: 293 GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G+ F +LA+    + G +L+   L       +          +  ++G+ T      +G+
Sbjct: 322 GEDFSELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGEVTRPFRTQYGW 379

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396
            +  V   + + +    + ++  A N +R  K  E+++   +++ +   
Sbjct: 380 HVLEVMGRRATDST--AQAREQQAMNVLRNRKYDEELQTWLRQIRDEAY 426


>gi|253576879|ref|ZP_04854204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251843746|gb|EES71769.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 376

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 108/336 (32%), Gaps = 24/336 (7%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I E E+      +L+    +  F+        L+ Q   + +     D          A 
Sbjct: 41  ITENEFDREQRIVLALQPQMEQFMQMEDFRQYLVKQEIAYEYLEAKADEKTKEAGKKKAE 100

Query: 206 ADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKE----KKIEISNDELQAEYEKN 260
               + + + + E+  K+   A +     +  + V        ++ +IS D+++ E+E  
Sbjct: 101 EQF-DLMKSSYGEENFKNMLDAQKVSEAEFKDYMVRIYTVMEGERQKISEDDVKKEFEAT 159

Query: 261 KEKYFSPEIRTV----------EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
           K+ Y +  +R +          E+      K A E    L KG+ F  LA++  +     
Sbjct: 160 KQDYTTASVRHILINFTDPDGKERTEEETLKLAKEVKAKLDKGEDFAALAKQYSEDPGSK 219

Query: 311 SLGSFSKEYIPDVSLAD-SIFSLAKK-GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
             G   +       +      +L +        +   +GY I  V +        F+++ 
Sbjct: 220 DNGGLYENVEVSNWVEAFKQAALTQPLNQIGDPVKTEYGYHIIRVESRTE---KKFEDLT 276

Query: 369 KDIANQMRITKASEKVKE-DYKRLEEFLALGTSM--DEISRREKIVSIDLPLVDFAGKDV 425
           ++  + ++ T AS K+ E     LE+ +     +   E S  E     D    + +    
Sbjct: 277 QEQKDMIQTTLASNKLDEFMAGDLEKKIIKKIDLPKVETSTGENGTGTDTNAGNGSNAGT 336

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
                A             G +      +      G
Sbjct: 337 DTGTNAGTEGSGNAGNTGTGSNTGNGAANNAGSNSG 372


>gi|148358511|ref|YP_001249718.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella pneumophila
           str. Corby]
 gi|296105860|ref|YP_003617560.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella pneumophila
           2300/99 Alcoy]
 gi|148280284|gb|ABQ54372.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella
           pneumophila str. Corby]
 gi|295647761|gb|ADG23608.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella pneumophila
           2300/99 Alcoy]
          Length = 429

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/441 (12%), Positives = 129/441 (29%), Gaps = 71/441 (16%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +  V  L  G+  A         V  V    +  S      +     I  +     N + 
Sbjct: 5   IALVCALFSGICFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 59

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                L K++L +L+      Q  +  G+  ++  +   I +        N  +      
Sbjct: 60  PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 115

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNLLLDQAKRFYFE---------- 188
            + ++GI+ +EY  +  K +  + V    VG  +  +N  ++Q  +              
Sbjct: 116 EITKQGISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTAGRIENSNLTYHL 175

Query: 189 ------------NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY------------ 224
                        + +    +   ++               E+    +            
Sbjct: 176 KNIVIPLSEEPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHL 235

Query: 225 -RAPEYKRISYILFDVHEKEKKIEISND----ELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
              PE      +   V +    I   N     +L A   +N+    +     V  ++   
Sbjct: 236 AELPEVFAKEVVHMKVGQVAGPIRAGNGFHLIKLVAVGGENQRHVIT--QTHVRHILLKP 293

Query: 280 Q---------KEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLA 326
                     K+ +  ++ ++ GK F  +A++     +       LG  +   +      
Sbjct: 294 DASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELV-PEFE 352

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKV 384
            ++ SL      +  +   +G+ +  V   +        E   K+ +   ++  K  E V
Sbjct: 353 KTMNSLPLH-KVSKPVKTQYGWHLIEVIARR---QKDDSEAFKKQQVRQFLQQRKFVEAV 408

Query: 385 KEDYKRLEEFLALGTSMDEIS 405
           +   + L     +     +++
Sbjct: 409 QNWQQHLRSQAYINIVDKDLA 429



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 96/298 (32%), Gaps = 32/298 (10%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278
             YR    K +           K I ++N++++   +       S     ++ +V P   
Sbjct: 125 QEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTAGRIENSNLTYHLKNIVIPLSE 184

Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLA 326
                     + EA+     +KKG+ F +LA E+     +L    LG      +P+V  A
Sbjct: 185 EPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEV-FA 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD--IANQMRITKASEKV 384
             +  + K G     I    G+ +  +  +          V     + + +    AS   
Sbjct: 244 KEVVHM-KVGQVAGPIRAGNGFHLIKLVAVGGENQR---HVITQTHVRHILLKPDASMVP 299

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
            E  K++        S  + +   K  S+D       G          +P  E+ +  + 
Sbjct: 300 SEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSL- 358

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV--LTDVKKDWKTVKTAEEVS 500
                    H V+ P  +     + E I  R +   E      V++  +  K  E V 
Sbjct: 359 -------PLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQ 409


>gi|253988050|ref|YP_003039406.1| peptidyl-prolyl cis-trans isomerase SurA [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779500|emb|CAQ82661.1| chaperone SurA precursor (peptidyl-prolyl cis-trans isomerase)
           [Photorhabdus asymbiotica]
          Length = 433

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/429 (13%), Positives = 129/429 (30%), Gaps = 71/429 (16%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
            + L +      ++ +S A  +      + +V    V   S INS  Q +   +Q  G  
Sbjct: 6   TLILGL------MFSVSTAFAAPQQMDKIAAVVNNGVVLESDINSLLQSVKRDAQHAGQQ 59

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           +  E      L  +IL+ L+    L Q  + +G+      +   IA         N  + 
Sbjct: 60  IPDEH----TLRHQILERLIMDNILLQMAKQMGITIPDQTLDSTIANIAA----QNHITR 111

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENRSV 192
           D    R+  +G++   Y +   K +   +V        +      +D   +    +N + 
Sbjct: 112 DQMKHRIVADGMSFDTYRNQIRKEMLIAEVRNNEVRRRVTILPQEIDTLAKQISNQNAND 171

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-- 250
             + +++  +P   +P    + +          +     + +    +        +    
Sbjct: 172 SELNISHILIPLPENPDQTQMEK-ATAVVHKIMSELKNGVDFGKLAIAYSADPQALKGGN 230

Query: 251 ------DELQAEYEKNKEKYFSPE-----------------------------IRTVEQL 275
                  EL   +    +                                         +
Sbjct: 231 MGWSKLQELPTLFAAQLQSAQKGAIVGPIRSGVGFHILKVNDIRGGNATIAVTEVHARHI 290

Query: 276 VFP-----NQKEADEAFQSLKKG-----KKFIQLAEE----QGKSLSDISLGSFSKEYIP 321
           +         ++A    Q +          F   A+E     G +L    LG  + + I 
Sbjct: 291 LLRISPVMTDEQARAKLQQIAGDIRSGKTDFADAAKEFSEDPGSALRGGDLGWSTPD-IF 349

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           D +  D++  L  KG+ +  IH SFG+ +  + + +        + K      +   K +
Sbjct: 350 DPAFRDALMRL-NKGEISQPIHSSFGWHLIQLLDTRKVDKTDVAQ-KDRAYRMLFNRKFT 407

Query: 382 EKVKEDYKR 390
           E+ +   + 
Sbjct: 408 EEAQSWMQE 416



 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 17/237 (7%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           D YR    K +       +E  +++ I   E+    ++   +  +     +  ++ P  +
Sbjct: 126 DTYRNQIRKEMLIAEVRNNEVRRRVTILPQEIDTLAKQISNQNANDSELNISHILIPLPE 185

Query: 282 EAD------------EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328
             D            +    LK G  F +LA         +  G+     + +  +L  +
Sbjct: 186 NPDQTQMEKATAVVHKIMSELKNGVDFGKLAIAYSADPQALKGGNMGWSKLQELPTLFAA 245

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKKD-IANQMRITKASEKVKE 386
               A+KG     I    G+ I  V++I+    T++  EV    I  ++      E+ + 
Sbjct: 246 QLQSAQKGAIVGPIRSGVGFHILKVNDIRGGNATIAVTEVHARHILLRISPVMTDEQARA 305

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
             +++   +  G +  + +   K  S D       G           P     L R+
Sbjct: 306 KLQQIAGDIRSGKT--DFADAAKEFSEDPGSALRGGDLGWSTPDIFDPAFRDALMRL 360


>gi|330996061|ref|ZP_08319955.1| PPIC-type PPIASE domain protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329574058|gb|EGG55636.1| PPIC-type PPIASE domain protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 479

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 67/199 (33%), Gaps = 31/199 (15%)

Query: 210 NAVLTQWFE---KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
            A L   ++    +K  +R        Y    +      +     EL+  Y+  K     
Sbjct: 76  EAALDARYDTLSSFKKEFRT-------YRDQQIRPYFVSLSAEEKELRRYYDGMKASIGP 128

Query: 267 PEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAE----EQGKSLSDI 310
             +     ++    ++A            D  + +L++G  F  LA+    ++G +    
Sbjct: 129 DGLVHPAHIMILVAQKATPEEQAKAKERIDSIYTALQQGADFATLAKQCSADKGSAARGG 188

Query: 311 SL-GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
            L G F+K         D  FSL  KG+ +       GY I  + + K      ++E+K 
Sbjct: 189 DLGGWFAKGQTLK-EFEDVAFSL-NKGEMSKPFLSPMGYHIVWMKDRK--QLEPYEELKP 244

Query: 370 DIANQMRITKASEKVKEDY 388
            +   +      E+V    
Sbjct: 245 QLQRFLESRGLKERVASIA 263


>gi|307609120|emb|CBW98563.1| hypothetical protein LPW_03901 [Legionella pneumophila 130b]
          Length = 429

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/441 (12%), Positives = 129/441 (29%), Gaps = 71/441 (16%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +  V  L  G+  A         V  V    +  S      +     I  +     N + 
Sbjct: 5   IALVCALFSGVCFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 59

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                L K++L +L+      Q  +  G+  ++  +   I +        N  +      
Sbjct: 60  PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 115

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNLLLDQAKRFYFE---------- 188
            + ++GI+ +EY  +  K +  + V    VG  +  +N  ++Q  +              
Sbjct: 116 EITKQGISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTAGRIENSNLTYHL 175

Query: 189 ------------NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY------------ 224
                        + +    +   ++               E+    +            
Sbjct: 176 KNIVIPLSEEPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHL 235

Query: 225 -RAPEYKRISYILFDVHEKEKKIEISND----ELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
              PE      +   V +    I   N     +L A   +N+    +     V  ++   
Sbjct: 236 AELPEVFAKEVVHMKVGQVAGPIRAGNGFHLIKLVAVGGENQRHVIT--QTHVRHILLKP 293

Query: 280 Q---------KEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLA 326
                     K+ +  ++ ++ GK F  +A++     +       LG  +   +      
Sbjct: 294 DASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELV-PEFE 352

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKV 384
            ++ SL      +  +   +G+ +  V   +        E   K+ +   ++  K  E V
Sbjct: 353 KTMNSLPLH-KVSKPVKTQYGWHLIEVIARR---QKDDSEAFKKQQVRQFLQQRKFVEAV 408

Query: 385 KEDYKRLEEFLALGTSMDEIS 405
           +   + L     +     +++
Sbjct: 409 QNWQQHLRSQAYINIVDKDLA 429



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 96/298 (32%), Gaps = 32/298 (10%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278
             YR    K +           K I ++N++++   +       S     ++ +V P   
Sbjct: 125 QEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTAGRIENSNLTYHLKNIVIPLSE 184

Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLA 326
                     + EA+     +KKG+ F +LA E+     +L    LG      +P+V  A
Sbjct: 185 EPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEV-FA 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD--IANQMRITKASEKV 384
             +  + K G     I    G+ +  +  +          V     + + +    AS   
Sbjct: 244 KEVVHM-KVGQVAGPIRAGNGFHLIKLVAVGGENQR---HVITQTHVRHILLKPDASMVP 299

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
            E  K++        S  + +   K  S+D       G          +P  E+ +  + 
Sbjct: 300 SEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSL- 358

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV--LTDVKKDWKTVKTAEEVS 500
                    H V+ P  +     + E I  R +   E      V++  +  K  E V 
Sbjct: 359 -------PLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQ 409


>gi|259047483|ref|ZP_05737884.1| foldase protein PrsA [Granulicatella adiacens ATCC 49175]
 gi|259035674|gb|EEW36929.1| foldase protein PrsA [Granulicatella adiacens ATCC 49175]
          Length = 315

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 70/189 (37%), Gaps = 28/189 (14%)

Query: 229 YKRISYI-LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285
           Y++  Y+        +K    ++++++  Y++ +          V+ ++   +  A +  
Sbjct: 110 YRQTIYLNKLMTAAVKKAAAFTDEDIKKYYDEWEP------QIKVQHILIAAKATASDEE 163

Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFS 331
                       Q LK G  F +LA+E             +G F +  +     +++ ++
Sbjct: 164 KAAAKAKAEELIQKLKDGADFSELAKENSADTGTASKGGEIGPFKRSDMVK-EFSEASYN 222

Query: 332 LAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           L   GD T   +   FGY I  + +        F EVK  + ++M   K  +     ++ 
Sbjct: 223 LKNVGDITETPVETQFGYHIIKMLD--KGEKKPFDEVKSQMEDEMLQAKLKDSAY-LHQT 279

Query: 391 LEEFLALGT 399
           + + L    
Sbjct: 280 MVDLLKGAD 288


>gi|220932053|ref|YP_002508961.1| peptidyl-prolyl cis-trans isomerase [Halothermothrix orenii H 168]
 gi|219993363|gb|ACL69966.1| peptidyl-prolyl cis-trans isomerase [Halothermothrix orenii H 168]
          Length = 495

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/395 (14%), Positives = 118/395 (29%), Gaps = 94/395 (23%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV------VSVGRQKVPFS 54
           M + +R  S+  +    +  L +     G      S   +S+V        V    +P  
Sbjct: 1   MFKKLRNYSKYII-YFVVAALVLTGAFLGFGAYRNSSPAASSVIDPNYIARVNDTSIPRE 59

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL--EADH 112
           ++    +             ++ E+   V     +L+ L+    L Q  E +G+      
Sbjct: 60  TYYQYLQNNAQFAQ------LSREQ--QVPYRLNLLNQLIERELLLQEAEKLGIESNPTD 111

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             V  +I +      +    + +     L   GI  +++ +     +  ++++       
Sbjct: 112 KEVKEQINKM----LEAYNITEEKLKELLDSRGIKYEDFKEDIRHNIKTSNIIRK----- 162

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
                                       H     + S   + + +EK       P    +
Sbjct: 163 -------------------------TIEHTYKGVEVSEDEIREAYEK-----VRPALIAV 192

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           +       E   KIE +  EL+             E +         +  A  +   LK 
Sbjct: 193 NIEGEKKKEARAKIEKALKELE-------------EGKAF------GEVAAKYSDLKLKD 233

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           G                  LG   +        + D  F L +KG  + +I G  GY I 
Sbjct: 234 G-----------------DLGFIGRNNGFLPQEVLDKAFEL-EKGKTSDIIEGEKGYYIV 275

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            V + K +    F++ ++++ +Q+   K +   + 
Sbjct: 276 KVIDKKLARGEEFEKSREELKDQLLKQKQNRTYQN 310



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 6/149 (4%)

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           E+V   +       +  +E  +K  + + E  +EGK F ++        L    +  +  
Sbjct: 183 EKVRPALIAVNIEGEKKKEARAKIEKALKEL-EEGKAFGEVAAKYSDLKLKDGDLGFIGR 241

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLT 595
            N F   + + + F           IE    Y + KV + K+   +E    +++    L 
Sbjct: 242 NNGFLPQEVLDKAFELEKGKTSDI-IEGEKGYYIVKVIDKKLARGEEFEKSREELKDQLL 300

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           +        + +   K Q  + ++D ++ 
Sbjct: 301 KQKQNRTYQNWLRDTKKQADIEIYDPVLN 329



 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 349 VIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
                  +       ++++V+  +       +  ++ +   ++  + L  G +  E++ +
Sbjct: 166 HTYKGVEVSEDEIREAYEKVRPALIAVNIEGEKKKEARAKIEKALKELEEGKAFGEVAAK 225

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
              + +    + F G++            +++L + F  +   + D  +   +  Y  V+
Sbjct: 226 YSDLKLKDGDLGFIGRNNGFLP-------QEVLDKAFELEKGKTSD--IIEGEKGYYIVK 276

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
           + +   AR  + E+   ++K      K   
Sbjct: 277 VIDKKLARGEEFEKSREELKDQLLKQKQNR 306


>gi|218261354|ref|ZP_03476208.1| hypothetical protein PRABACTJOHN_01874 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224075|gb|EEC96725.1| hypothetical protein PRABACTJOHN_01874 [Parabacteroides johnsonii
           DSM 18315]
          Length = 470

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 129/375 (34%), Gaps = 34/375 (9%)

Query: 262 EKYFSPEIRTVEQLVFPN-------QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DIS 311
           +K  +P+   V  ++  N       + +AD     LKKG  F  LA+E     +      
Sbjct: 110 DKTVAPDSVKVSHIMLANTGDEAAIKAKADSLLNVLKKGGDFAALAKEYSADQAAEKGGE 169

Query: 312 LGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
           LG F++       +     ++FS     D++ ++   +G  I  V++   +      +V 
Sbjct: 170 LGWFTEATALRGVNDDFKKAVFS-TPVNDYS-IVKSLYGTHIIKVTDKTANVDK--YKVA 225

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
                 M ++ +++     Y  L +F++   +MD++    K    +L  +         +
Sbjct: 226 D---IDMTVSPSTKTYGNIYNELNQFISKNQNMDKLDDAAKEAGYNL--LSNVTVTANDQ 280

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
            + +I     ++   F           +   D  ++   I+ ++P   R LE V   +K 
Sbjct: 281 LLGSIKNSRPVIRWAFQNS--KGDISEIFECDDKFVIAAIQGTLPEGYRSLESVTPMLKS 338

Query: 489 DWKTVKTAEEVSSKANQLVLEY-SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
           +    K       K  ++V +  +K   +     + + +S  +   ++         G +
Sbjct: 339 ELIAQK-------KGEKIVQDLSAKNLSSVDAYAQAMNSSADSVKFVSFATRRIAGIGVE 391

Query: 548 G-ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF-ISYLTQMMNKDLLDS 605
             ++ + S   +     P+       VFKV           +   I  L           
Sbjct: 392 PKLNAMVSLAQKDQLSAPVAGNNGVYVFKVYEQNKDAKNYDEAAEIKTLDASNAYRFGFQ 451

Query: 606 VIAYLKSQYSVTVHD 620
            I  L ++  V  + 
Sbjct: 452 AIQSLVNKADVEDNR 466


>gi|22127555|ref|NP_670978.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis KIM 10]
 gi|45443417|ref|NP_994956.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51594986|ref|YP_069177.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia
           pseudotuberculosis IP 32953]
 gi|108810533|ref|YP_646300.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Nepal516]
 gi|145600395|ref|YP_001164471.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Pestoides
           F]
 gi|150260469|ref|ZP_01917197.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis CA88-4125]
 gi|153949109|ref|YP_001402397.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia
           pseudotuberculosis IP 31758]
 gi|165928093|ref|ZP_02223925.1| chaperone SurA [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937810|ref|ZP_02226371.1| chaperone SurA [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008803|ref|ZP_02229701.1| chaperone SurA [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212220|ref|ZP_02238255.1| chaperone SurA [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167422012|ref|ZP_02313765.1| chaperone SurA [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426071|ref|ZP_02317824.1| chaperone SurA [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167470553|ref|ZP_02335257.1| chaperone SurA [Yersinia pestis FV-1]
 gi|170025786|ref|YP_001722291.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia
           pseudotuberculosis YPIII]
 gi|186893987|ref|YP_001871099.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia
           pseudotuberculosis PB1/+]
 gi|218927692|ref|YP_002345567.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis CO92]
 gi|229836923|ref|ZP_04457088.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           Pestoides A]
 gi|229840382|ref|ZP_04460541.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842462|ref|ZP_04462617.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229900721|ref|ZP_04515845.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           Nepal516]
 gi|270487908|ref|ZP_06204982.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
 gi|294502589|ref|YP_003566651.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis Z176003]
 gi|81691900|sp|Q66EQ7|SURA_YERPS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|121956556|sp|Q7CG87|SURA_YERPE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|121956562|sp|Q1CMT0|SURA_YERPN RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|21960659|gb|AAM87229.1|AE013971_5 survival protein [Yersinia pestis KIM 10]
 gi|45438286|gb|AAS63833.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis biovar Microtus str. 91001]
 gi|51588268|emb|CAH19875.1| peptidyl-prolyl cis-trans isomerase, survival protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774181|gb|ABG16700.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis Nepal516]
 gi|115346303|emb|CAL19174.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis CO92]
 gi|145212091|gb|ABP41498.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis Pestoides F]
 gi|149289877|gb|EDM39954.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis CA88-4125]
 gi|152960604|gb|ABS48065.1| chaperone SurA [Yersinia pseudotuberculosis IP 31758]
 gi|165914222|gb|EDR32838.1| chaperone SurA [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919954|gb|EDR37255.1| chaperone SurA [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992142|gb|EDR44443.1| chaperone SurA [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206966|gb|EDR51446.1| chaperone SurA [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960149|gb|EDR56170.1| chaperone SurA [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167054994|gb|EDR64794.1| chaperone SurA [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169752320|gb|ACA69838.1| SurA domain [Yersinia pseudotuberculosis YPIII]
 gi|186697013|gb|ACC87642.1| SurA domain protein [Yersinia pseudotuberculosis PB1/+]
 gi|229682060|gb|EEO78152.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           Nepal516]
 gi|229690772|gb|EEO82826.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696748|gb|EEO86795.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229705866|gb|EEO91875.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           Pestoides A]
 gi|262360619|gb|ACY57340.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis D106004]
 gi|262364565|gb|ACY61122.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis D182038]
 gi|270336412|gb|EFA47189.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
 gi|294353048|gb|ADE63389.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis Z176003]
 gi|320016865|gb|ADW00437.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 434

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 70/437 (16%), Positives = 140/437 (32%), Gaps = 74/437 (16%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
            + L ++         + A  +      V +V    V   S I+   Q + M +Q+ G  
Sbjct: 6   TLILGLVICA------NTAFAAPQEVDKVAAVVDNGVVLQSDIDGLLQSVKMNAQQSGQQ 59

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           V         L  +IL+ L+      Q  + +G+      +   IA         N+ + 
Sbjct: 60  VP----DDSTLRHQILERLIMDNIQLQMAKKMGITITDQALDKAIADIAA----QNRMTL 111

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVD 193
               SRLA +G++   Y +   K +  ++V        +      ++   +      S D
Sbjct: 112 AQMRSRLAADGLSYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQMGNQVSGD 171

Query: 194 Y-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-- 250
             + L++  +P   +P+   + Q  E   +   A       +    +        +    
Sbjct: 172 TELNLSHILIPLPENPTQQQVDQ-AEDLANKLVADIKGGADFGKLAIANSADSQALKGGQ 230

Query: 251 ------DELQAEYEKNKEKYFSPEIRT-------VEQLVFPNQKEADE------------ 285
                  EL + + +  +     EI            L   + + AD+            
Sbjct: 231 MGWGKLQELPSLFAERLQSAHKGEIVGPIRSGVGFHILKVNDMRGADQTISVTEVNARHI 290

Query: 286 -------------------AFQSLKKGK-KFIQLAEE----QGKSLSDISLGSFSKEYIP 321
                              A   +K GK  F  +A+E     G ++    LG  S + I 
Sbjct: 291 LLKPSPMMTDEQARAKLEAAAAEIKSGKTSFATIAKEISQDPGSAMQGGELGWASPD-IY 349

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           D +  D++  L KKG+ +  +H SFG+ +  + + +                  R+    
Sbjct: 350 DPAFRDALMKL-KKGEISAPVHSSFGWHLIQLVDTRQVDKTD----AAQKERAYRMLFNR 404

Query: 382 EKVKEDYKRLEEFLALG 398
           +  +E    ++E  A  
Sbjct: 405 KFAEEAQTWMQEQRAAA 421


>gi|46198541|ref|YP_004208.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB27]
 gi|46196163|gb|AAS80581.1| probable peptidyl-prolyl cis-trans isomerase [Thermus thermophilus
           HB27]
          Length = 337

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 65/153 (42%), Gaps = 8/153 (5%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                ++ +S   L+A +     +Y  P +     L+ P ++EA+EA   L +G+ F ++
Sbjct: 172 ARYRSRLAVSRAALKALWLL-SPEYRHPTLYCARHLLVPTREEAEEARLRLARGEAFAEV 230

Query: 300 A----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A    ++ G       LG   +      +  +++  L + G+ +  +   FGY +  +  
Sbjct: 231 ARAVSQDPGSKEEGGDLGCAPEGTYV-PAFEEALVRL-RPGEVSGPVRTEFGYHLILLER 288

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           + P      +E    +  ++   +A E+++E  
Sbjct: 289 VVPPGRYPLEEAAPLLEKEVA-DRAWERLEEAL 320


>gi|238782669|ref|ZP_04626699.1| Chaperone surA [Yersinia bercovieri ATCC 43970]
 gi|238716329|gb|EEQ08311.1| Chaperone surA [Yersinia bercovieri ATCC 43970]
          Length = 434

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/404 (14%), Positives = 128/404 (31%), Gaps = 66/404 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S      +  + + +Q+ G  V         L  +IL+ L+  +  
Sbjct: 26  DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQQVP----DDATLRHQILERLIMDSIQ 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+      +   IA         N+ +     SRLA +G+N   Y +   K +
Sbjct: 81  LQMAKKMGITVSDEALDKAIADIAA----QNRMTPAQMRSRLAADGLNYDTYREQIRKEM 136

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217
             ++V        +      ++   +      S D  + L++  +P   +PS   + Q  
Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 195

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268
           E+  +   +       +    +        +           EL + + +  +     + 
Sbjct: 196 EELANKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAEKLQSANKGDV 255

Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291
                                             ++            + +   A   +K
Sbjct: 256 VGPIRSGVGFHILKVNDIRGADKTVSVTEVHARHILLKPSPVMTDDQARAKLAAAAADIK 315

Query: 292 KGKK-FIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            GK  F  +A+E     G ++    LG  S + I D +  D++  L +KG+ +  +H SF
Sbjct: 316 SGKTTFANIAKEISQDPGSAVQGGDLGWASPD-IYDPAFRDALMKL-QKGEISAPVHSSF 373

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+ +  V + +     +    K      +   K +E+ +   + 
Sbjct: 374 GWHLIQVVDTR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 416


>gi|309791442|ref|ZP_07685948.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
           trichoides DG6]
 gi|308226521|gb|EFO80243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
           trichoides DG6]
          Length = 363

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 45/241 (18%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAK-RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
           ++R + V  +  G   S +L    +     +   V+ + +    +       +A +    
Sbjct: 114 ITRGEFVRAYQPGDEVSAVLKQLIQVELLLQQAGVEGVTVEASEL-------DAEIAAI- 165

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE------KYFSPEIRT 271
              K ++  PE                    S + +++  E+N         + + E   
Sbjct: 166 ---KSSFGTPEEFT--------AMLAANQIESEEAMRSIIERNMLIDKMVLSHTTMEQVH 214

Query: 272 VEQLVFPN--------QKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEY 319
              ++           + EA+     ++ G  F QLA E+ +          LG   +  
Sbjct: 215 ARHILLATTAETVDARKAEAEAILAQIQGGADFAQLAAEKSEDPGSKDKGGDLGWAGRGM 274

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
                  +++FS+ K      ++   FG+ I  V +  PS   S      D+   M   +
Sbjct: 275 FVGP-FDEAVFSMQKDEV--RLVQTDFGWHIIQVLD--PSTVRSLDSA--DLLQTMAGQQ 327

Query: 380 A 380
           A
Sbjct: 328 A 328



 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 28/176 (15%)

Query: 32  DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
            A+  V+ +  +  VG   +    F+ ++         + G  V++           +L 
Sbjct: 95  QAIGDVTSTEPITQVGDAVITRGEFVRAY---------QPGDEVSA-----------VLK 134

Query: 92  NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
            L+    L Q     G+  +   +  EIA              + F + LA   I   E 
Sbjct: 135 QLIQVELLLQQAGVEGVTVEASELDAEIAAI---KSSFGT--PEEFTAMLAANQI---ES 186

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
            +    ++ R  ++   V        +  +         +VD        + A   
Sbjct: 187 EEAMRSIIERNMLIDKMVLSHTTMEQVHARHILLATTAETVDARKAEAEAILAQIQ 242


>gi|330818272|ref|YP_004361977.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia gladioli
           BSR3]
 gi|327370665|gb|AEA62021.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia gladioli
           BSR3]
          Length = 451

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/411 (12%), Positives = 110/411 (26%), Gaps = 69/411 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V   +      L  ++L+ +V     
Sbjct: 40  DEVVAVVNNGVITARELDQRVGLISRRLQQQKVPVPPPDE-----LRSQVLNQMVVERIQ 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+E     V   + R        N  + D + ++L   G+    +       L
Sbjct: 95  LQKAKDDGIEVSDATVQSTLQRLAA----ANGMTVDQYRAQLEALGVPWSTFSGDARNEL 150

Query: 160 SRTDV---------------VGMFVGGMRPSNLLLDQAKRFY---------FENRSVDYI 195
             + +               V  ++   R  N    Q  R                +D  
Sbjct: 151 ILSRLREKEVDSKITVTDAEVASYIASQRGPNSGSQQDVRLEHIFVAAPQNAPQDQIDIA 210

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAPEYKRISYILFDVHEKEKK 245
                 +   A  S A   +      +           ++AP       +      +  +
Sbjct: 211 QKKADGLLKQALASGADFEKLARNSSEAKDAKTGGDLGFKAPGSLPADVVQAVSQLRPGQ 270

Query: 246 IEISNDELQAEYEKNKEKYFSPE-----------IRTVEQLVF-----PNQKEADE---- 285
           +  +   +   +E  +     P               V  ++       ++ +A +    
Sbjct: 271 VSPNLIRVPDGFEIVRLVDRRPASGTVGASPKIVQTHVRHILLRVGEGKSESQARQQLID 330

Query: 286 AFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
               ++ G  F   A    + G +     LG  S           ++  L + G  +  +
Sbjct: 331 IRNQIEAGGDFANFARTYSQDGSASQGGDLGWISPGETV-PEFERAMSQL-QDGQISQPV 388

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
              +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 389 RTEYGYHLIQVLGRRDAEG-SVQKQMDIARQAIGQRKAEQAYADWLRELRD 438



 Score = 37.7 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 107/309 (34%), Gaps = 30/309 (9%)

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP--DVSLADSIFSLAKKGDFTPVIHGSFG 347
           +KK  +F  +       +S +S+   + + +     +LAD + ++   G  T        
Sbjct: 1   MKKSLRFAAIVSGLAAVMSLLSVTPAAAQALGSSGATLADEVVAVVNNGVITARELDQRV 60

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-EKVKEDYKRLEEF--------LALG 398
            +I+     +        E++  + NQM + +   +K K+D   + +         LA  
Sbjct: 61  GLISRRLQQQKVPVPPPDELRSQVLNQMVVERIQLQKAKDDGIEVSDATVQSTLQRLAAA 120

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
             M     R ++ ++ +P   F+G D + + + +   ++++  ++   D  ++       
Sbjct: 121 NGMTVDQYRAQLEALGVPWSTFSG-DARNELILSRLREKEVDSKITVTDAEVASYIASQR 179

Query: 459 PD--GSYMWVQIKESIPARDR--KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
               GS   V+++    A  +    +++              +    KA+ L+ +    G
Sbjct: 180 GPNSGSQQDVRLEHIFVAAPQNAPQDQI--------------DIAQKKADGLLKQALASG 225

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
            +F  + +N   +       +           D +  V       V    I     + + 
Sbjct: 226 ADFEKLARNSSEAKDAKTGGDLGFKAPGSLPADVVQAVSQLRPGQVSPNLIRVPDGFEIV 285

Query: 575 KVTNSKVGP 583
           ++ + +   
Sbjct: 286 RLVDRRPAS 294


>gi|332160260|ref|YP_004296837.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325664490|gb|ADZ41134.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 434

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/404 (14%), Positives = 125/404 (30%), Gaps = 66/404 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S      +  + + +Q+ G  V         L  +IL+ L+     
Sbjct: 26  DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQQVP----DDATLRHQILERLIMDNIQ 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+      +   IA         N+ +     SRLA +G+N   Y +   K +
Sbjct: 81  LQMAKKMGITISDEALDKAIADIAA----QNRMTPAQMRSRLAADGLNYDTYREQIRKEM 136

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217
             ++V        +      ++   +      S D  + L++  +P   +PS   + Q  
Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 195

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268
           E       +       +    +        +           EL + + +  +     + 
Sbjct: 196 EDLAKKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSASKGDV 255

Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291
                                             ++            + +   A   +K
Sbjct: 256 VGPIRSGVGFHILKVNDIRGTDKTISVTEVHARHILLKPSPVMTDDQARAKLTAAAADIK 315

Query: 292 KGK-KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            GK  F  +A+E     G ++    LG  S + I D +  D++  L +KG+ +  +H SF
Sbjct: 316 SGKANFATIAKEISQDPGSAMQGGDLGWASPD-IYDPAFRDALMKL-QKGEISAPVHSSF 373

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+ +  V + +     +    K      +   K +E+ +   + 
Sbjct: 374 GWHLIQVVDTR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 416


>gi|295675486|ref|YP_003604010.1| SurA domain protein [Burkholderia sp. CCGE1002]
 gi|295435329|gb|ADG14499.1| SurA domain protein [Burkholderia sp. CCGE1002]
          Length = 477

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/436 (11%), Positives = 122/436 (27%), Gaps = 74/436 (16%)

Query: 20  VLFVPFL-IWGLSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           V    F+ +  +       +   TV      V    +               ++Q+   V
Sbjct: 40  VAAASFVPVASVQAQALGGNSGQTVDTIAAVVNNGVITQRELDERVGLIAHRLNQQNAPV 99

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
             +++     L +++L  +V      Q  ++ G+  D   V   + R      + N    
Sbjct: 100 PPTDQ-----LRQQVLTQMVLERIQLQKAKEDGINIDDAAVQRTLERL----AQANNMPL 150

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG----------------------- 171
            ++ +R+  +G+    + +     L+ + +    V                         
Sbjct: 151 AMYRARIEAQGVPWATFSNDARTELTLSRLREKEVDSKITVTDAEVANYIASQRGPGAGQ 210

Query: 172 --------MRPSNLLLDQAKRFYFENRSVDYIVLNN---RHVPAIADPSNAVLTQWFEKY 220
                   +  S  L           +    ++           +A  ++          
Sbjct: 211 TSDLHMQHIFVSAPLNAPETDIEAAQKKAQGLLAEAKGGADFGKLAKANSQAPDASKNGG 270

Query: 221 KDNYRAP-----EYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFSPE-----I 269
              + AP     E+ + +  L         I  ++  E+    E+   +  S +      
Sbjct: 271 DLGFLAPSKLPPEFVKAASTLRPGEISPDLIRTNDGFEIVRLVERRAGQGTSADAPKLVQ 330

Query: 270 RTVEQLVF---------PNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSK 317
             V  ++            +++  +    +  G  F + A    + G S     LG  S 
Sbjct: 331 THVRHILLRVGDGQSEPQARQKLIDIRNQIAAGGDFAKFAHTYSQDGSSSQGGDLGWISP 390

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
                     ++ +L + G  +  +   +GY +  V   + +   S  +        +  
Sbjct: 391 GETV-PEFERAMNAL-QDGQISEPVRSEYGYHLIQVLGRRDAEG-SIAQQMDLARQAIGQ 447

Query: 378 TKASEKVKEDYKRLEE 393
            KA +   +  + L +
Sbjct: 448 RKAEQAYADWLRELRD 463


>gi|269137960|ref|YP_003294660.1| peptidyl-prolyl cis-trans isomerase SurA [Edwardsiella tarda
           EIB202]
 gi|267983620|gb|ACY83449.1| peptidyl-prolyl cis-trans isomerase SurA [Edwardsiella tarda
           EIB202]
 gi|304558008|gb|ADM40672.1| Survival protein SurA precursor [Edwardsiella tarda FL6-60]
          Length = 435

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/402 (13%), Positives = 115/402 (28%), Gaps = 62/402 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S      K       Q      + +   +  L  +IL+ L+     
Sbjct: 26  DKVVAIVDNGVVLESDVDGMMKSVKLNAQQ-----ADQQLPDNATLRHQILERLIMDNVQ 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +GLE     +   I        + N  S     SRLA +G++ K Y     K +
Sbjct: 81  LQMAKRMGLEISDSELDNAINGI----AQQNHISMQQLRSRLAADGLDYKTYRAQIRKEM 136

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIV-LNNRHVPAIADPSN------- 210
             ++V        +      +D   +      S +  V L++  +P   +P+        
Sbjct: 137 LISEVRNNEVRRRVTILPQEVDALAKQIGSQNSGETAVNLSHILIPLPENPTQQQVSEAQ 196

Query: 211 ----------------AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL- 253
                           A L   +       +  E              E        ++ 
Sbjct: 197 QQAESLIQQLHQGASFAKLAAAYSADPQALKGGEMGWGRLQELPTLFAEALQSAKKGDIV 256

Query: 254 --------QAEYEKNKEKYFSPE----IRTVEQLVF---------PNQKEADEAFQSLKK 292
                         N  +               ++            + + +     +  
Sbjct: 257 GPIRSGVGFHILRVNDLRGDQANVSVTEVHARHILLRTSPVMSDAQARAKLEALSAQITS 316

Query: 293 GK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           GK  F Q A+E  +       G    ++   + D +  D++  L  KG+ +  +H +FG+
Sbjct: 317 GKITFEQAAKEYSQDPGSAQKGGDLGWAVPSMYDPAFRDALMKL-NKGEISQPVHSNFGW 375

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            +  +   +     + +  K+     +   K +E+ +   + 
Sbjct: 376 HLIQLLGTR-QVDRTDEAQKERAYRMLFNRKFAEEAQTWLQE 416



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 94/304 (30%), Gaps = 32/304 (10%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             ++    +      G+  S+  LD A     +   +    L +R      D        
Sbjct: 73  RLIMDNVQLQMAKRMGLEISDSELDNAINGIAQQNHISMQQLRSRLAADGLD-------- 124

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
                   YRA   K +       +E  +++ I   E+ A  ++   +        +  +
Sbjct: 125 -----YKTYRAQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQIGSQNSGETAVNLSHI 179

Query: 276 VFPNQK------------EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322
           + P  +            +A+   Q L +G  F +LA         +  G      + + 
Sbjct: 180 LIPLPENPTQQQVSEAQQQAESLIQQLHQGASFAKLAAAYSADPQALKGGEMGWGRLQEL 239

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-VSFQEVKKD-IANQMRITKA 380
            +L       AKKGD    I    G+ I  V++++     VS  EV    I  +     +
Sbjct: 240 PTLFAEALQSAKKGDIVGPIRSGVGFHILRVNDLRGDQANVSVTEVHARHILLRTSPVMS 299

Query: 381 SEKVKEDYKRLEEFLALGT-SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
             + +   + L   +  G  + ++ ++     S D       G           P     
Sbjct: 300 DAQARAKLEALSAQITSGKITFEQAAKEY---SQDPGSAQKGGDLGWAVPSMYDPAFRDA 356

Query: 440 LFRV 443
           L ++
Sbjct: 357 LMKL 360


>gi|238795196|ref|ZP_04638783.1| Chaperone surA [Yersinia intermedia ATCC 29909]
 gi|238725483|gb|EEQ17050.1| Chaperone surA [Yersinia intermedia ATCC 29909]
          Length = 434

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/404 (14%), Positives = 126/404 (31%), Gaps = 66/404 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S      +  + + +Q+ G  V         L  +IL+ L+     
Sbjct: 26  DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQSGQQVP----DDATLRHQILERLIMDNIQ 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+  +   +   IA         N+ +     SRLA +G+N   Y +   K +
Sbjct: 81  LQMAKKMGITINDEALDKAIADIAA----QNRMTTAQMRSRLAADGLNYDTYREQIRKEM 136

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217
             ++V        +      ++   +      S D  + L++  +P   +PS   + Q  
Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 195

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268
           E+      +       +    +        +           EL + + +  +     + 
Sbjct: 196 EELATKLVSDIKSGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSANKGDV 255

Query: 269 ----------------------------IRTVEQLVFP-----NQKEADEAFQ----SLK 291
                                             ++          +A          +K
Sbjct: 256 VGPIRSGVGFHILKVNDIRGADKTISVTEVHARHILLKPSPVMTDDQARTKLAAAAADIK 315

Query: 292 KGKK-FIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            GK  F  +A+E     G ++    LG  S + I D +  D++  L +KG+ +  +H SF
Sbjct: 316 SGKSSFATIAKEISQDPGSAVQGGDLGWASPD-IYDPAFRDALMKL-QKGEISAPVHSSF 373

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+ +  V + +     +    K      +   K +E+ +   + 
Sbjct: 374 GWHLIQVVDTR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 416



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 99/312 (31%), Gaps = 35/312 (11%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             D YR    K +       +E  ++I I   E+++  ++   +        +  ++ P 
Sbjct: 124 NYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       ++ A +    +K G  F +LA         +  G      + +  SL 
Sbjct: 184 PENPSQQQVDQAEELATKLVSDIKSGADFGKLAIANSADSQALKGGQMGWGKLQELPSLF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKK-----DIANQMRITKA 380
                 A KGD    I    G+ I  V++I+ +  T+S  EV         +  M   +A
Sbjct: 244 AERLQSANKGDVVGPIRSGVGFHILKVNDIRGADKTISVTEVHARHILLKPSPVMTDDQA 303

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
             K+      ++   +  +S   I++    +S D       G           P     L
Sbjct: 304 RTKLAAAAADIK---SGKSSFATIAKE---ISQDPGSAVQGGDLGWASPDIYDPAFRDAL 357

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEE 498
            ++   +        ++ P  S     + + +  R  D+          +   + K AEE
Sbjct: 358 MKLQKGE--------ISAPVHSSFGWHLIQVVDTRQVDKTDAAQKDRAYRMLFSRKFAEE 409

Query: 499 VSSKANQLVLEY 510
             +   +     
Sbjct: 410 AQTWMQEQRAAA 421


>gi|108810078|ref|YP_653994.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Antiqua]
 gi|167401555|ref|ZP_02307049.1| chaperone SurA [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|121956548|sp|Q1C0H3|SURA_YERPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|108781991|gb|ABG16049.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis Antiqua]
 gi|167048937|gb|EDR60345.1| chaperone SurA [Yersinia pestis biovar Antiqua str. UG05-0454]
          Length = 434

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 70/437 (16%), Positives = 140/437 (32%), Gaps = 74/437 (16%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
            + L ++         + A  +      V +V    V   S I+   Q + M +Q+ G  
Sbjct: 6   TLILGLVICA------NTAFAAPQEVDKVAAVVDNGVVLQSDIDGLLQSVKMNAQQSGLQ 59

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           V         L  +IL+ L+      Q  + +G+      +   IA         N+ + 
Sbjct: 60  VP----DDSTLRHQILERLIMDNIQLQMAKKMGITITDQALDKAIADIAA----QNRMTL 111

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVD 193
               SRLA +G++   Y +   K +  ++V        +      ++   +      S D
Sbjct: 112 AQMRSRLAADGLSYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQMGNQVSGD 171

Query: 194 Y-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-- 250
             + L++  +P   +P+   + Q  E   +   A       +    +        +    
Sbjct: 172 TELNLSHILIPLPENPTQQQVDQ-AEDLANKLVADIKGGADFGKLAIANSADSQALKGGQ 230

Query: 251 ------DELQAEYEKNKEKYFSPEIRT-------VEQLVFPNQKEADE------------ 285
                  EL + + +  +     EI            L   + + AD+            
Sbjct: 231 MGWGKLQELPSLFAERLQSAHKGEIVGPIRSGVGFHILKVNDMRGADQTISVTEVNARHI 290

Query: 286 -------------------AFQSLKKGK-KFIQLAEE----QGKSLSDISLGSFSKEYIP 321
                              A   +K GK  F  +A+E     G ++    LG  S + I 
Sbjct: 291 LLKPSPMMTDEQARAKLEAAAAEIKSGKTSFATIAKEISQDPGSAMQGGELGWASPD-IY 349

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           D +  D++  L KKG+ +  +H SFG+ +  + + +                  R+    
Sbjct: 350 DPAFRDALMKL-KKGEISAPVHSSFGWHLIQLVDTRQVDKTD----AAQKERAYRMLFNR 404

Query: 382 EKVKEDYKRLEEFLALG 398
           +  +E    ++E  A  
Sbjct: 405 KFAEEAQTWMQEQRAAA 421


>gi|119504985|ref|ZP_01627062.1| Parvulin-like peptidyl-prolyl isomerase [marine gamma
           proteobacterium HTCC2080]
 gi|119459271|gb|EAW40369.1| Parvulin-like peptidyl-prolyl isomerase [marine gamma
           proteobacterium HTCC2080]
          Length = 436

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/410 (11%), Positives = 124/410 (30%), Gaps = 72/410 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQ-ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
              V  V    +  +         +  +  ++I    +   AR        LD L+  + 
Sbjct: 42  DKVVAIVDDDIILATELQERLLLIQRNIEQRQIDAPPDEVLARE------TLDRLILESI 95

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
             Q     G+     ++   +AR        + ++ + F + +   G   + Y+    + 
Sbjct: 96  QLQLANRYGVRIPDAQLDAAMARMAS----GSNYTLEQFRAAVEANG---QSYLA-MREE 147

Query: 159 LSRTDVVGMFVGGMRPSNLLL--DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
           + R  ++     G    N+ +   +   F       +      R + A+ + S       
Sbjct: 148 IRREMMIQRVQQGNVSRNIEISEQEVDNFLSTEAGAEMTQPEFRVIQALVEVSKKDSKAD 207

Query: 217 FEKYKDNYRA------------PEYKRIS-----------YILFDVHEKEKKIEISNDEL 253
            +K K+++              PE   +            +   D         I + ++
Sbjct: 208 RQK-KEDFVDGILASILAGKDFPEAVSVIEPYVFKGGDLGWKKLDAIPSMFAAVIPSLKV 266

Query: 254 QA-------------EYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK--- 292
                               + +    E   V  ++       ++  A      L++   
Sbjct: 267 GDTAKVASGAGFHLVYLADERGRERLVEQTEVRHILIKPTEVLDEDAAIALATELRQRAM 326

Query: 293 -GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA+E    +        LG  S   +      D+  +  + G+ +  +   FG
Sbjct: 327 DGEDFGALAKEYSDDIGSAQEGGELGWTSPGQMV--PEFDATMATTEVGEISYPVKSQFG 384

Query: 348 YVIAHVSNIKPSFTVSFQEV-KKDIANQMRITKASEKVKEDYKRLEEFLA 396
           + I  V+  +       +++ ++ +   +   K  E+++   +++ E   
Sbjct: 385 WHILEVTGRREENIA--EQMRRQQVMGYLHDQKYDEELEAWLRKIREEAF 432


>gi|262198048|ref|YP_003269257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
           DSM 14365]
 gi|262081395|gb|ACY17364.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
           DSM 14365]
          Length = 342

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 13/222 (5%)

Query: 217 FEKYKDNYRAPEYKRI-SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           F+K  +  R  +   I   +     ++ K  +I  +EL+A ++++KE+Y  P+      +
Sbjct: 112 FDKDPEVVRTLKQVMIQKLVKEQFTDELKPEDIPEEELRAYFDEHKEEYQRPDQVRAAAI 171

Query: 276 VFPNQKEADEAFQSLKKGK-----KFIQLAEEQGKS----LSDISLGSFSKEYI-PDVSL 325
           V  ++  AD+     K         F  L     K      S   LG F K        +
Sbjct: 172 VLDDKASADKLLSEAKAAAEKNHVAFRNLVTAHSKDGDSKNSGGDLGFFDKSSSDVPAPV 231

Query: 326 ADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
            ++ F+L      + VI    G + I  ++  + + + SF +VK+ + N++   K  +  
Sbjct: 232 IEAAFALDSN-QVSDVIDAGNGRFYIIKITGRRKAMSKSFDDVKRQLLNRVYRDKRVKMQ 290

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
           ++    L+E   +  + + +S+ E      +  ++  G+   
Sbjct: 291 EDFVAALKEKATINYNEENLSKVEIDTGSGMTDLNQHGQLPS 332



 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 51/162 (31%), Gaps = 6/162 (3%)

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
            E      R  ++V            +A+++ S+A     +     +N        G S 
Sbjct: 154 DEHKEEYQRP-DQVRAAAIV-LDDKASADKLLSEAKAAAEKNHVAFRNLVTAHSKDGDSK 211

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
            +   +   D  +       I   F+     V          + + K+T  +    +  D
Sbjct: 212 NSGGDLGFFDKSSSDVPAPVIEAAFALDSNQVSDVIDAGNGRFYIIKITGRRKAMSKSFD 271

Query: 589 KFISYLTQMMNKD----LLDSVIAYLKSQYSVTVHDNLIQRY 626
                L   + +D    + +  +A LK + ++  ++  + + 
Sbjct: 272 DVKRQLLNRVYRDKRVKMQEDFVAALKEKATINYNEENLSKV 313


>gi|110346927|ref|YP_665745.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium sp.
           BNC1]
 gi|110283038|gb|ABG61098.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chelativorans sp.
           BNC1]
          Length = 290

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 88/246 (35%), Gaps = 23/246 (9%)

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
            D     L+  + +     G  P +           E R V             A+ ++ 
Sbjct: 44  QDITADDLAIAEQMYSQQLGQMPEDARRSMLVDALIELRIV-------AEAARKANVADQ 96

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
                +++    + A   + +               ++++ ++A Y++   K      R 
Sbjct: 97  EA---YKRQLAFFEAQSLRSLFLEQRVAAA------VTDEAVKAAYDERVGKIPPVLERR 147

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLAD 327
           +  ++  ++ +A E  ++LK GK F +LA+E+       +    LG  ++  +      D
Sbjct: 148 LRHILLRSESDAVEVIEALKGGKAFAELAQERSADEVSKVKGGDLGFVAEGQVV--PEVD 205

Query: 328 SIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +  +  + G+FT   +  +FG+ +  V   +     +F+ V   I   +  T+    + E
Sbjct: 206 AAAAKLQPGEFTQSPVASAFGFHVVLVEETRNRPPPAFEAVAPQIRQALEATEERRIISE 265

Query: 387 DYKRLE 392
                +
Sbjct: 266 LRAAAK 271



 Score = 38.0 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 1/112 (0%)

Query: 507 VLEYSKEGKNFRDIGKNLGA-SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
           V+E  K GK F ++ +   A  +      +           +  +             P+
Sbjct: 162 VIEALKGGKAFAELAQERSADEVSKVKGGDLGFVAEGQVVPEVDAAAAKLQPGEFTQSPV 221

Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            +   + V  V  ++  P    +     + Q +       +I+ L++   V 
Sbjct: 222 ASAFGFHVVLVEETRNRPPPAFEAVAPQIRQALEATEERRIISELRAAAKVE 273


>gi|206581089|ref|YP_002240483.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Klebsiella
           pneumoniae 342]
 gi|288937183|ref|YP_003441242.1| peptidylprolyl isomerase [Klebsiella variicola At-22]
 gi|290512604|ref|ZP_06551970.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella sp. 1_1_55]
 gi|206570147|gb|ACI11923.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Klebsiella
           pneumoniae 342]
 gi|288891892|gb|ADC60210.1| Peptidylprolyl isomerase [Klebsiella variicola At-22]
 gi|289774945|gb|EFD82947.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella sp. 1_1_55]
 gi|294488615|gb|ADE88150.1| peptidyl-prolyl cis-trans isomerase [Pantoea agglomerans]
          Length = 428

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/371 (13%), Positives = 114/371 (30%), Gaps = 61/371 (16%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQIVLQLGQKMGVKVSDDQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191
           + D   SRLA EGIN   Y     K +  ++V        +      ++   +   +   
Sbjct: 110 TMDQMRSRLAYEGINYNTYRSQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQND 169

Query: 192 VDY-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
               + L++  +P   +P+   +    ++  +          ++    +     +  +  
Sbjct: 170 ASTELNLSHILIPLAENPTADEVAA-AQEQANAIVEQARNGANFGKLAITYSADQQALKG 228

Query: 251 --------DELQAEYEKNKEKYFSPE-----------------------------IRTVE 273
                    EL   + +        +                                  
Sbjct: 229 GQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHAR 288

Query: 274 QLVFP---------NQKEADEAFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSKEY 319
            ++            Q + ++    +K GK  F + A+    + G +     LG  + + 
Sbjct: 289 HILLKPSPIMNDAQAQAKLEQIAADIKSGKTTFAKAAKAFSEDPGSANQGGDLGWATPD- 347

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           I D +  D++  L  KG  +  +H SFG+ +  + + +     +    K      +   K
Sbjct: 348 IFDPAFRDALMRL-NKGQTSGPVHSSFGWHLIELLDSR-QVDRTDAAQKDRAYRMLMNRK 405

Query: 380 ASEKVKEDYKR 390
            SE+     + 
Sbjct: 406 FSEEAATWMQE 416



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/382 (14%), Positives = 119/382 (31%), Gaps = 48/382 (12%)

Query: 149 KEYIDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
                   + L    +V       G++ S+  LDQA                  ++    
Sbjct: 64  ATLRHQILERLIMDQIVLQLGQKMGVKVSDDQLDQAI----------------ANIAKQN 107

Query: 207 DPSNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
           + +   +     +     + YR+   K +       +E  ++I +   E++A  ++  ++
Sbjct: 108 NMTMDQMRSRLAYEGINYNTYRSQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQ 167

Query: 264 YFSPEIRTVEQLVFP------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
             +     +  ++ P             Q++A+   +  + G  F +LA         + 
Sbjct: 168 NDASTELNLSHILIPLAENPTADEVAAAQEQANAIVEQARNGANFGKLAITYSADQQALK 227

Query: 312 LGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-VSFQEVKK 369
            G      I +   +     S AKKGD    I    G+ I  V++++     +S  EV  
Sbjct: 228 GGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHA 287

Query: 370 D-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
             I  +        + +   +++   +  G +    ++  K  S D    +  G      
Sbjct: 288 RHILLKPSPIMNDAQAQAKLEQIAADIKSGKT--TFAKAAKAFSEDPGSANQGGDLGWAT 345

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDV 486
                P     L R+             + P  S     + E + +R  DR         
Sbjct: 346 PDIFDPAFRDALMRL--------NKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRA 397

Query: 487 KKDWKTVKTAEEVSSKANQLVL 508
            +     K +EE ++   +   
Sbjct: 398 YRMLMNRKFSEEAATWMQEQRA 419


>gi|146281122|ref|YP_001171275.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas stutzeri
           A1501]
 gi|145569327|gb|ABP78433.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas stutzeri
           A1501]
          Length = 451

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/408 (11%), Positives = 122/408 (29%), Gaps = 64/408 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S      ++    I ++      ++      L +++L+ L++    
Sbjct: 52  DRVVAIVDNDVIMQSQLNQRMREVQQTIEKRGADAPPTDV-----LQQQVLERLITENLQ 106

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   +        + N  S + F   LAR+G++ +   +   + +
Sbjct: 107 LQIGERSGIRISDEELNQAMGTI----AQRNNMSLEQFREALARDGLSLETAREQIRREM 162

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVD--------YIVLNNRHVPAIADPSN 210
             + V        ++ SN  +            +          I +      A    + 
Sbjct: 163 VISRVRQRRVAERIQVSNQEVQNFLASDLGKLQLSEEYHLANILIAVPEGADSATIQAAE 222

Query: 211 AVLTQWFEKYKD--NYRAPEYKRI---------SYILFDVHEKEKKIEISNDELQ----- 254
                 +++ +   ++      R                  +     +    EL      
Sbjct: 223 RTAMDTYQQLQQGADFARLAVSRSGSENALEGGDMGWRKAAQLPPPFDTEVRELSVGEVT 282

Query: 255 ------------AEYEKNKEKYFSPEIRTVEQLVFP-----NQKEA----DEAFQSLKKG 293
                          +K   +    +   V  ++       + +EA          +  G
Sbjct: 283 QPVRTPPGFIMLKLLDKRGGETQVRDEVHVRHILIKPSAIRSDEEARLLVQRLRDRINAG 342

Query: 294 KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F QLA    E+ G +L+   L       +      + + +    G+ + V    +G+ 
Sbjct: 343 EDFAQLARSFSEDPGSALNGGDLNWIDPASLV-PEFRE-VMANTPSGELSQVFKSPYGWH 400

Query: 350 IAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396
           I  V   + +     ++ ++  A + +R  K  E+++   +++ +   
Sbjct: 401 ILEVLGRRATDAS--EQFREQQALSLLRNRKYDEELQAWLRQIRDEAY 446



 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 73/195 (37%), Gaps = 18/195 (9%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-- 286
            + +           ++I++SN E+Q     +  K    E   +  ++    + AD A  
Sbjct: 159 RREMVISRVRQRRVAERIQVSNQEVQNFLASDLGKLQLSEEYHLANILIAVPEGADSATI 218

Query: 287 ----------FQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLA 333
                     +Q L++G  F +LA  +     +L    +G      +P       +  L+
Sbjct: 219 QAAERTAMDTYQQLQQGADFARLAVSRSGSENALEGGDMGWRKAAQLP-PPFDTEVRELS 277

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLE 392
             G+ T  +    G+++  + + +   T    EV    I  +    ++ E+ +   +RL 
Sbjct: 278 -VGEVTQPVRTPPGFIMLKLLDKRGGETQVRDEVHVRHILIKPSAIRSDEEARLLVQRLR 336

Query: 393 EFLALGTSMDEISRR 407
           + +  G    +++R 
Sbjct: 337 DRINAGEDFAQLARS 351


>gi|329847914|ref|ZP_08262942.1| PPIC-type PPIASE domain protein [Asticcacaulis biprosthecum C19]
 gi|328842977|gb|EGF92546.1| PPIC-type PPIASE domain protein [Asticcacaulis biprosthecum C19]
          Length = 348

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 76/222 (34%), Gaps = 8/222 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           +I    ++  Y++  +     E      ++  +++EAD   ++++ G  F  +A E+   
Sbjct: 129 DIDEKSIKEHYDEQVKLSKQSEEIRTRVILLKSKEEADNVMKAVQGGSLFEAMAMERSID 188

Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                S   +G F+ + +P       + S AK GD    +    G+ I  V + +P    
Sbjct: 189 QTTRFSGGDMGYFTTDIMPQAY--KGVLSTAKIGDTVGPVQAEGGWAILRVEDRRPEQLP 246

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYK--RLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
           S +E +  I   +   + +  ++   K  ++E+ +      D   +              
Sbjct: 247 SLEEERPIIMRYLIYNQVAGLLESLRKGAKVEKLIEKSALSDRAGQEPANAPAHAVEDSA 306

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
           +  +       A    + +   V   +        +    G 
Sbjct: 307 SASEEASASTPATGKGKPVAMSVPMGEAKPGSSKLIGTARGG 348


>gi|124516328|gb|EAY57836.1| protein of unknown function [Leptospirillum rubarum]
          Length = 238

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 70/237 (29%), Gaps = 32/237 (13%)

Query: 1   MLEIIRKAS----RTWVAKIFL--VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS 54
           MLE IRK +    +     + L   +  V    WG S       G   V  +    +  +
Sbjct: 1   MLEWIRKVAVERPKVLGTLMILVGAIFVVSMGWWGFSAYKSGKPG--IVARINGTPLYAT 58

Query: 55  SFINSWKQELGMISQKI-GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
            F   ++       + +    +  +    +     +L N++           + L     
Sbjct: 59  EFSRDYEIMKNNYQRLLLNGALGKKILTELNFPGLVLRNMIFRQLWIDEANHLHLIVPDA 118

Query: 114 RVWGEIARSPLFHGKDNK-FSHDVFVSRLAREGINEKEYIDHYTKMLSRTD---VVGMFV 169
            V  E++R P F   +   FS  ++   L     + K++     + L       +V    
Sbjct: 119 VVVSEVSRIPFFQEGNPPVFSSKLYTQFLLETHQSAKDFEQSIREDLLVQRAQVLVRAIQ 178

Query: 170 GGMRPSN-------------------LLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
               P++                   L  +  + F  +  +   + ++      ++ 
Sbjct: 179 TPAAPASPTDEKTAAGLDDWQKKRLALQEETLQSFQMQLENRSNVKIDQEAFKKLSK 235


>gi|238797487|ref|ZP_04640985.1| Chaperone surA [Yersinia mollaretii ATCC 43969]
 gi|238718628|gb|EEQ10446.1| Chaperone surA [Yersinia mollaretii ATCC 43969]
          Length = 434

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/404 (14%), Positives = 127/404 (31%), Gaps = 66/404 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S      +  + + +Q+ G  V         L  +IL+ L+     
Sbjct: 26  DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQQVP----DDATLRHQILERLIMDNIQ 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+      +   IA         N+ +     SRLA +G+N   Y +   K +
Sbjct: 81  LQMAKKMGITVSDEALDKAIADIAA----QNRMTTAQMRSRLAADGLNYDTYREQIRKEM 136

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217
             ++V        +      ++   +      S D  + L++  +P   +PS   + Q  
Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSADAELNLSHILIPLPENPSQQQVDQ-A 195

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268
           E+  +   +       +    +        +           EL + + +  +     + 
Sbjct: 196 EELANKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSANKGDV 255

Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291
                                             ++            + +   A   +K
Sbjct: 256 VGPIRSGVGFHILKVNDIRGADKTVSVTEVHARHILLKPSPVMTDDQARAKLTAAAADIK 315

Query: 292 KGK-KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            GK  F  +A+E     G ++    LG  S + I D +  D++  L +KG+ +  +H SF
Sbjct: 316 SGKATFANIAKEISQDPGSAVQGGDLGWASPD-IYDPAFRDALMKL-QKGEISAPVHSSF 373

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+ +  V + +     +    K      +   K +E+ +   + 
Sbjct: 374 GWHLIQVVDTR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 416


>gi|152984414|ref|YP_001350152.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           aeruginosa PA7]
 gi|150959572|gb|ABR81597.1| probable peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa PA7]
          Length = 314

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 13/155 (8%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLKKGKKFIQL 299
           S+ +L   YE NK +   P +  V Q+             +K A E ++    G  F +L
Sbjct: 140 SDADLHDAYEANKAQLGVPALYRVSQIFIATATAGGPAEARKRAQELYRQAATG-DFAEL 198

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A +          G      +    L  +        K G+ +  I G  G+ +  ++  
Sbjct: 199 ARKYSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGEVSEPIQGGNGFHLVKLTER 258

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     S  EV++ +   +R  +  +  K     L
Sbjct: 259 RDPRLASLDEVRERLRASLRAQRQEQIAKAYLDGL 293



 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
           + ++  + L    A G    E++R+      D P     G D+ G  + A       +  
Sbjct: 178 EARKRAQELYRQAATGD-FAELARKYS----DDPQTARNGGDIGG--LLAQAQLLPAIRP 230

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
              +         +   +G +  V++ E    R   L+EV   ++   +  +  +   + 
Sbjct: 231 ALERLKVGEVSEPIQGGNG-FHLVKLTERRDPRLASLDEVRERLRASLRAQRQEQIAKAY 289

Query: 503 ANQLV 507
            + LV
Sbjct: 290 LDGLV 294


>gi|330505263|ref|YP_004382132.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
 gi|328919549|gb|AEB60380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
          Length = 432

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/413 (11%), Positives = 133/413 (32%), Gaps = 64/413 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S      ++    I ++ G  +  E      L +++L+ L+     
Sbjct: 33  DRVVAIVDNDVVMQSQLDARLREVQQTIDKR-GGALPPEHV----LSQQVLERLIIENIQ 87

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G+      +   +        + N  S + F   LAR+G++  +  D   + +
Sbjct: 88  LQIGDRSGIRITDEELNQAMGTI----AQRNGMSLEQFRDALARDGLSYADARDQVRREM 143

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAK-------RFYFENRSVDYIV-LNNRHVPAIADPSN 210
             + V        ++ ++  +           +   E R  + ++ ++     +    ++
Sbjct: 144 IISRVRQRRVAERIQVTDQEVQNFLASDLGKMQLSEEFRLANILIPVSEGASSSEIQAAD 203

Query: 211 AVLTQWFEKYKD--NY-------------------------RAPEYKRISYILFDVHEKE 243
               + +++ +   ++                         + P          +  E  
Sbjct: 204 RQAQELYQQLQQGADFGQLAVSRSASENALEGGEMGWRKAGQLPPPFDSMISQLNPGEAT 263

Query: 244 KKIEISND-ELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
           + +       +    EK        +   V  ++            ++  +  +Q +  G
Sbjct: 264 EPVRTPGGFIILKLIEKRGGDTQVRDEVHVRHILIKPSEIRSEEETRRLVERLYQRIVDG 323

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F +LA+    + G +L+   L       +      + + +    G+ +      +G+ 
Sbjct: 324 EDFAELAKSFSEDPGSALNGGDLNWIDPNALV-PEFRE-VMNNTASGELSKPFKSPYGWH 381

Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +  V   +    +  F+E  +  AN +R  K  E+++   +++ +   + T +
Sbjct: 382 VLQVMGRRATDSSAQFRE--QQAANLLRNRKYDEELQAWLRQIRDEAYVETKL 432



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 72/198 (36%), Gaps = 25/198 (12%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------- 278
            + +           ++I++++ E+Q     +  K    E   +  ++ P          
Sbjct: 140 RREMIISRVRQRRVAERIQVTDQEVQNFLASDLGKMQLSEEFRLANILIPVSEGASSSEI 199

Query: 279 --NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLA 333
               ++A E +Q L++G  F QLA  +     +L    +G      +P     DS+ S  
Sbjct: 200 QAADRQAQELYQQLQQGADFGQLAVSRSASENALEGGEMGWRKAGQLPPP--FDSMISQL 257

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASEKVK 385
             G+ T  +    G++I  +   +   T    EV          +I ++    +  E++ 
Sbjct: 258 NPGEATEPVRTPGGFIILKLIEKRGGDTQVRDEVHVRHILIKPSEIRSEEETRRLVERLY 317

Query: 386 EDYKRLEEFLALGTSMDE 403
           +     E+F  L  S  E
Sbjct: 318 QRIVDGEDFAELAKSFSE 335


>gi|288941221|ref|YP_003443461.1| nitrogen fixation protein NifM [Allochromatium vinosum DSM 180]
 gi|288896593|gb|ADC62429.1| nitrogen fixation protein NifM [Allochromatium vinosum DSM 180]
          Length = 290

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 69/170 (40%), Gaps = 18/170 (10%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQ 280
            + + +         +   +S +E++  + ++ E++  PE R    ++           +
Sbjct: 109 RRELIFDAVMTRVGARAEAVSEEEVRRFHAEHPERFQIPERRAARHILITINADYAENGR 168

Query: 281 KEADEAFQSLKKGKK-----FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSL 332
           + A    ++L    +     F QLA        +L D  LG+  +  +    L  ++F+L
Sbjct: 169 EAARARIEALAADAQARPDAFGQLARRHSECPTALEDGRLGTLPRGRLY-PELDAALFAL 227

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
              G  + V+    G+ +    +I+P  T+ F++ +  I  +++  +  +
Sbjct: 228 -DAGQVSGVLESEIGFHLLWCEHIEPGRTIDFEQARPHIRERLQSQRRHD 276


>gi|162420091|ref|YP_001605345.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Angola]
 gi|162352906|gb|ABX86854.1| chaperone SurA [Yersinia pestis Angola]
          Length = 434

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 70/437 (16%), Positives = 140/437 (32%), Gaps = 74/437 (16%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
            + L ++         + A  +      V +V    V   S I+   Q + M +Q+ G  
Sbjct: 6   TLILGLVICA------NTAFAAPQEVDKVAAVVDNGVVLQSDIDGLLQSVKMNAQQSGQQ 59

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           V         L  +IL+ L+      Q  + +G+      +   IA         N+ + 
Sbjct: 60  VP----DDSTLRHQILERLIMDNIQLQMAKKMGITITDQALDKAIADIAA----QNRMTL 111

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVD 193
               SRLA +G++   Y +   K +  ++V        +      ++   +      S D
Sbjct: 112 AQMRSRLAADGLSYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQMGNQVSGD 171

Query: 194 Y-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-- 250
             + L++  +P   +P+   + Q  E   +   A       +    +        +    
Sbjct: 172 TELNLSHILIPLPENPTQQQVDQ-AEDLANKLVADIKGGADFGKLAIANSADSQALKGGQ 230

Query: 251 ------DELQAEYEKNKEKYFSPEIRT-------VEQLVFPNQKEADE------------ 285
                  EL + + +  +     EI            L   + + AD+            
Sbjct: 231 MGWGKLQELPSLFAERLQSAHKGEIVGPIRSGVGFHILKVNDMRGADQTISVTEVNARHI 290

Query: 286 -------------------AFQSLKKGKK-FIQLAEE----QGKSLSDISLGSFSKEYIP 321
                              A   +K GK  F  +A+E     G ++    LG  S + I 
Sbjct: 291 LLKPSPMMTDEQARAKLEAAAAEIKSGKTNFATIAKEISQDPGSAMQGGELGWASPD-IY 349

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           D +  D++  L KKG+ +  +H SFG+ +  + + +                  R+    
Sbjct: 350 DPAFRDALMKL-KKGEISAPVHSSFGWHLIQLVDTRQVDKTD----AAQKERAYRMLFNR 404

Query: 382 EKVKEDYKRLEEFLALG 398
           +  +E    ++E  A  
Sbjct: 405 KFAEEAQTWMQEQRAAA 421


>gi|262044914|ref|ZP_06017956.1| peptidylprolyl cis-trans isomerase SurA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259037641|gb|EEW38870.1| peptidylprolyl cis-trans isomerase SurA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 428

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 117/371 (31%), Gaps = 61/371 (16%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISEDQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191
           + D   SRLA EGIN   Y +   K +  ++V        +      ++   +   +   
Sbjct: 110 TLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQND 169

Query: 192 VDY-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
               + L++  +P   +P++  +    ++  ++         ++    +     +  +  
Sbjct: 170 ASTELNLSHILIPLPENPTSDEVAA-AQEQANSIVEQARNGANFGKLAITYSADQQALKG 228

Query: 251 --------DELQAEYEKNKEKYFSPE-----------------------------IRTVE 273
                    EL   + +        +                                  
Sbjct: 229 GQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHAR 288

Query: 274 QLVFP---------NQKEADEAFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSKEY 319
            ++            Q + ++    +K GK  F Q A+    + G +     LG  + + 
Sbjct: 289 HILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPD- 347

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           I D +  D++  L  KG  +  +H SFG+ +  + + +     +    K      +   K
Sbjct: 348 IFDPAFRDALMRL-NKGQTSGPVHSSFGWHLIELLDSR-QVDRTDAAQKDRAYRMLMNRK 405

Query: 380 ASEKVKEDYKR 390
            SE+     + 
Sbjct: 406 FSEEAATWMQE 416



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 98/306 (32%), Gaps = 27/306 (8%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I +   E++A  ++  ++  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       Q++A+   +  + G  F +LA         +  G      I +   + 
Sbjct: 184 PENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-VSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++     +S  EV    I  +        + 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           +   +++   +  G      ++  K  S D    +  G           P     L R+ 
Sbjct: 304 QAKLEQIAAEIKSGK--ITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRL- 360

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                       + P  S     + E + +R  DR          +     K +EE ++ 
Sbjct: 361 -------NKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATW 413

Query: 503 ANQLVL 508
             +   
Sbjct: 414 MQEQRA 419


>gi|123440995|ref|YP_001004984.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087956|emb|CAL10744.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318607170|emb|CBY28668.1| survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 434

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/404 (14%), Positives = 125/404 (30%), Gaps = 66/404 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S      +  + + +Q+ G  V         L  +IL+ L+     
Sbjct: 26  DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQQVP----DDATLRHQILERLIMDNIQ 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+      +   IA         N+ +     SRLA +G+N   Y +   K +
Sbjct: 81  LQMAKKMGITISDEALDKAIADIAA----QNRMTPAQMRSRLAADGLNYDTYREQIRKEM 136

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217
             ++V        +      ++   +      S D  + L++  +P   +PS   + Q  
Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 195

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268
           E       +       +    +        +           EL + + +  +     + 
Sbjct: 196 EDLAKKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSASKGDV 255

Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291
                                             ++            + +   A   +K
Sbjct: 256 VGPIRSGVGFHILKVNDIRGADKTISVTEVHARHILLKPSPVMTDDQARAKLTAAAADIK 315

Query: 292 KGK-KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            GK  F  +A+E     G ++    LG  S + I D +  D++  L +KG+ +  +H SF
Sbjct: 316 SGKANFATIAKEISQDPGSAMQGGDLGWASPD-IYDPAFRDALMKL-QKGEISAPVHSSF 373

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+ +  V + +     +    K      +   K +E+ +   + 
Sbjct: 374 GWHLIQVVDTR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 416


>gi|226942334|ref|YP_002797407.1| nitrogen fixation cis-trans peptidyl prolyl isomerase, NifM
           [Azotobacter vinelandii DJ]
 gi|226717261|gb|ACO76432.1| Nitrogen fixation cis-trans peptidyl prolyl isomerase, NifM
           [Azotobacter vinelandii DJ]
          Length = 293

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 102/270 (37%), Gaps = 48/270 (17%)

Query: 175 SNLLLDQAKRFYFENRSV-DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE----- 228
           S   L QA R     R + D ++ +   +  +  PS   L + +      Y +PE     
Sbjct: 31  SEEQLQQADRIIGRQRHIEDAVLRSPDAIGVVIPPS--QLEEAWAHIASRYESPEALQQA 88

Query: 229 ----------YKRISYILFDVHEKEKKI-----EISNDELQAEYEKNKEKYFSPEIRTVE 273
                      + +      V      +     EIS+ ++   Y  + E++  P      
Sbjct: 89  LDAQALDAAGMRAMLARELRVEAVLDCVCAGLPEISDTDVSLYYFNHAEQFKVPAQHKAR 148

Query: 274 QLVF--------PNQKEA----DEAFQSLK-KGKKFIQLAEEQG---KSLSDISLGSFSK 317
            ++           ++ A    +   + L+ K ++F + A +      ++    LG    
Sbjct: 149 HILVTINEDFPENTREAARTRIETILKRLRGKPERFAEQAMKHSECPTAMQGGLLGEVVP 208

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN--QM 375
             +    L   +F +A+ G+ +PV+    G+ + +  ++ P+  ++ +E+   + +  Q+
Sbjct: 209 GTLY-PELDACLFQMAR-GELSPVLESPIGFHVLYCESVSPARQLTLEEILPRLRDRLQL 266

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           R  KA ++     K LE  L    +++ ++
Sbjct: 267 RQRKAYQR-----KWLESLLQQNATLENLA 291


>gi|317503245|ref|ZP_07961302.1| peptidyl-prolyl cis-trans isomerase [Prevotella salivae DSM 15606]
 gi|315665633|gb|EFV05243.1| peptidyl-prolyl cis-trans isomerase [Prevotella salivae DSM 15606]
          Length = 713

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 87/722 (12%), Positives = 204/722 (28%), Gaps = 127/722 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56
           L  IR  S+  +    + +    F+     +A  S   +       V  V  +K+  + F
Sbjct: 4   LGKIR--SKGALLMGIIGLGLFAFI---AEEAFRSCESTRNNERQQVGEVLGEKISVNDF 58

Query: 57  INSWKQELGMI-SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
              + +   ++  Q+    +N E+     +   + +  V    +++  +++GL      +
Sbjct: 59  QKLFDEYSEVVKMQQGADALNDEQLNQ--VKDMVWNTFVQTKLIEKEAKELGLRVTDTEM 116

Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLA-------REGINEKEYI-------- 152
                      + ++P  + +  +F  +     LA             ++Y         
Sbjct: 117 QNVLREGTNPMLLQTPFVNQQTGRFDANALQKFLAEYDAQRTANPQMAQQYETIYKYWTF 176

Query: 153 --DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV------------DYIVLN 198
                 + L       +    +  + +    A     +   +            D + ++
Sbjct: 177 IEKTLRQQLLAQKYQSLLAHCLLSNPVEAKMAFNEENQESQIQLAAFPYTSIQDDKVKIS 236

Query: 199 NRHVPAI-----------------------ADPSNAV---LTQWFEKYKDNYRAPE---- 228
           +  + A                          PS      L + F  Y  +  A E    
Sbjct: 237 DSDLKAKYDELKPRFRQYVESRDIKYVDVQVTPSATDRSALQKDFAGYAKDLAAAEDPST 296

Query: 229 -----YKRISYILFDVHEKEKKIEIS---------------NDELQAEYEKNK--EKYFS 266
                   ++Y+   V +     +I+                D+L       +   K   
Sbjct: 297 VVRKSSSLVNYLGLPVGKTAFPADIAAKLDSMAVGQTSGVIEDKLDNTLNVIRLISKQQL 356

Query: 267 PEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318
           P+     Q+           K AD  + +LK G  F  LA++ G++   + ++   +   
Sbjct: 357 PDSVQYRQIQVGGASAAAAHKSADSIYAALKAGADFEALAKKYGQTGQKAWMTTQQYQSA 416

Query: 319 YIPDVSLADSIFSLAK--KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
              D    + I +L      +   +     G +I  V + K         V   I   + 
Sbjct: 417 PSMDNDTKNYINNLNTMAVNETKNIPLSQ-GNIIVQVLDRKGMTEK---YVAAVIKKNIV 472

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
              +++   + Y +   F++   +  +I +        +              +A I   
Sbjct: 473 F--SNDTYSKAYNKFSSFVSANQTAADIEKNAAKSGYRVQEAKDV--TTAQHYLANIHGT 528

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVK 494
              L  +F               +   +   + +  P   R L+  +V   VK +    K
Sbjct: 529 RDALKWLFDAKQGDVSPMYSCGDNDHLLVAILTKINPVGYRSLDDAQVKDMVKAEVMKDK 588

Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
            AE + +K  + V   +        + +    +      +                 V++
Sbjct: 589 KAEMLMNKV-KGVNSLAAAKAKGAKVAEVNQVTFAAPVFVTLTGASEPALS----GAVYA 643

Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
                    P++      +F+V N  + P +  D  +    +        + +  L    
Sbjct: 644 TAKGKFSTNPVKGNAGVYMFQVVNKTMRPGKFDDNGMEQKIRQKIMQYAGNFMNELYINA 703

Query: 615 SV 616
            V
Sbjct: 704 KV 705


>gi|160901465|ref|YP_001567047.1| SurA domain-containing protein [Delftia acidovorans SPH-1]
 gi|160367049|gb|ABX38662.1| SurA domain [Delftia acidovorans SPH-1]
          Length = 475

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/473 (13%), Positives = 135/473 (28%), Gaps = 92/473 (19%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + V  +       +    I+++ G  +  E      L +++L+ L+      Q 
Sbjct: 73  VAVVNSEPVTNNEVRARMARVAQNIAEQ-GGQMPPEAL----LAREVLERLIVEKAQLQE 127

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            +D GL  D   V   +        + N        SRL  EG+NEK++ +   + ++  
Sbjct: 128 AKDTGLRVDDYAVDQALTNV----ARQNGLDKAGLQSRLRAEGVNEKQFREELRRQITLQ 183

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            +                                   R V      ++A + ++  + + 
Sbjct: 184 RLRE---------------------------------RDVDGRVRVTDADIDRYLAEQRS 210

Query: 223 NY--RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
               +AP    + +IL  V E     E++           + +          Q      
Sbjct: 211 GGADKAPAAVNLGHILISVPENASPAEVAE---------REARAKQAAEAARTQ------ 255

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDFT 339
                          F+ + +E          G+   +       L         +G   
Sbjct: 256 -------------GDFLAVVKEFSDVPDGQGGGAMGMRPLDRYPELFTKAVGQTAQGGIV 302

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQE------VKKDIANQMRITKASEKVKEDYKRLEE 393
                  G+ +  V     +   S         +   I +QM    A++++ +  +R++ 
Sbjct: 303 GPFRSGAGFHVLKVLEKSQAGMPSVVTQNHARHILLRIGDQMTEADAAKRLADYKRRVD- 361

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
             +   S + ++R               G          +P  EQ+L  +        + 
Sbjct: 362 --SGQASFESLAREFSQDG----SARNGGDLGWASPGQFVPEFEQVLNAL-----QPGQV 410

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
               +       +Q+ E   A     E+    V+   +  K   +  +   +L
Sbjct: 411 SDPLVSRFGVHLIQLIERRQAALTPREQ-RDMVRNVVRERKLETDYQAWLQEL 462


>gi|313204350|ref|YP_004043007.1| ppic-type peptidyL-prolyl cis-trans isomerase [Paludibacter
           propionicigenes WB4]
 gi|312443666|gb|ADQ80022.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paludibacter
           propionicigenes WB4]
          Length = 647

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/382 (13%), Positives = 116/382 (30%), Gaps = 62/382 (16%)

Query: 22  FVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
            + FL  W LS   F+ +    ++++  + V  S F   +                +   
Sbjct: 5   VIAFLTFWALSVGSFAQTSDPVLMTINGKPVSKSEFEYIYN-----------KNNTNNSL 53

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
               LD+ + +  ++     +  +  G++     +                     + S+
Sbjct: 54  DKKTLDEYV-ELFINFKLKVEEAKKQGIDTTEAFISEL----------------SGYRSQ 96

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR---PSNLLLDQAKRFYFENRSVDYIVL 197
           L R  + + +  +   +         + V  +    P N L     + + E  ++ +  L
Sbjct: 97  LTRPYLTDPKVDEILLREAYERSKEDVDVSHILIRIPQNALPADTLKAWNEINTI-WRRL 155

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
            + +   +A   +   +   EK           R  Y              S   ++  +
Sbjct: 156 EHENFSRVAKEISQDESA--EKNSGRLGWISVFRTVYPFESAAYNTPVGSYSKP-IRTAF 212

Query: 258 EKNKEKYFSPEIRT------VEQLVFPNQK-----------EADEAFQSLKKGKKFIQLA 300
             +  K      R       V  ++    K             D  ++ L  G+ F  LA
Sbjct: 213 GYHIVK--VHARRKTLGDVLVSHIMILTNKGDDFLNKRAKTTIDSLYRRLIAGEDFGALA 270

Query: 301 EEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +  +       +  L  F    +       + F+L   G+ +  I  + G+ I  + + 
Sbjct: 271 RKYSQDKTTSSKNGELPWFGSGRMV-PEFEKAAFALKNVGEISKPIQTNGGWHILKLLDK 329

Query: 357 KPSFTVSFQEVKKDIANQMRIT 378
           K     SF E+K D+  +++  
Sbjct: 330 K--GIASFDELKADLERKVKRD 349



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 87/273 (31%), Gaps = 47/273 (17%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------------GK 294
           ++    L+  YE++K      E   V  ++    + A  A  +LK              +
Sbjct: 106 KVDEILLREAYERSK------EDVDVSHILIRIPQNALPA-DTLKAWNEINTIWRRLEHE 158

Query: 295 KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            F ++A+E  +  S       LG  S  +        + ++    G ++  I  +FGY I
Sbjct: 159 NFSRVAKEISQDESAEKNSGRLGWIS-VFRTVYPFESAAYN-TPVGSYSKPIRTAFGYHI 216

Query: 351 AHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
             V   +     +  +V      I         +++ K     L   L  G     ++R+
Sbjct: 217 VKVHARR----KTLGDVLVSHIMILTNKGDDFLNKRAKTTIDSLYRRLIAGEDFGALARK 272

Query: 408 E---KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
               K  S     + + G               +     F   +       +   +G + 
Sbjct: 273 YSQDKTTSSKNGELPWFGSGR---------MVPEFEKAAFALKNVGEISKPIQT-NGGWH 322

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
            +++ +         +E+  D+++  K    ++
Sbjct: 323 ILKLLDKK--GIASFDELKADLERKVKRDDRSK 353


>gi|218961685|ref|YP_001741460.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730342|emb|CAO81254.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
          Length = 679

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 70/185 (37%), Gaps = 18/185 (9%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
             +   EY +              + I++D+L + Y +N  +++     T++ +   N+ 
Sbjct: 112 KRFYIQEYYK--------RNVSDLVFITDDDLLSYYNQNLSQFYQYPYITIDYIQAENED 163

Query: 282 EADEAFQSLKKGKKFIQL---------AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
            A +A   LKKG  F  +         A+     + ++ L         D+ L + I + 
Sbjct: 164 AAKKALAELKKGISFATVSDTYNQNSYAKGLKGRIKNVRLNGNIPGIGNDIELENIIRNA 223

Query: 333 AKKG-DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                +F   +   +G+ I  + +    +   F EVK +I  ++R  K  E +      L
Sbjct: 224 QVDTLNFIGPVKTDYGWHILRIVDWIEGYQKDFNEVKPEIEQRVRPMKERELLNALTDNL 283

Query: 392 EEFLA 396
           +   A
Sbjct: 284 KIKYA 288



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 79/189 (41%), Gaps = 13/189 (6%)

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
            ++F + +D  +A   +               IEI+++E+   YE+ KE++ +P  RT+E
Sbjct: 376 EKYFSENEDYLQA--KRSYVLRRAFEKLVSDTIEITDEEIAERYEREKERFSTPAYRTIE 433

Query: 274 QLVFPNQKEADEAFQSLKKG------KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
            L F N+K+A+ A++   K       +K  ++ ++      +  L       I      D
Sbjct: 434 VLFFDNKKDANTAWKKYSKAYKKHNEQKMQEIIKKYSLKPENAILDHQYNNGIITGFGQD 493

Query: 328 SIFSLA----KKGDFTPVIHGSFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           + FS        G  +PV   + G ++        PS   S +E +  +   ++  K   
Sbjct: 494 AEFSSQIWNNPVGYLSPVFTSARGDIVFFRTLKETPSSYKSKEETETQLRRMIKSEKEKA 553

Query: 383 KVKEDYKRL 391
           K++E  + L
Sbjct: 554 KMEEVTENL 562


>gi|256823427|ref|YP_003147390.1| SurA domain-containing protein [Kangiella koreensis DSM 16069]
 gi|256796966|gb|ACV27622.1| SurA domain protein [Kangiella koreensis DSM 16069]
          Length = 427

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/416 (11%), Positives = 126/416 (30%), Gaps = 63/416 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  V    +  S       Q    I  + G  +  E      L K++L+ L+  +  
Sbjct: 25  DKVIAHVDEDVILQSELDRKVIQAKQQIRSR-GGQLPPEDV----LKKELLEQLIIQSLQ 79

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q     G++     +    A+      + +  + D F   LA++GI  + ++D   K +
Sbjct: 80  YQMAVRSGMQLQPAELQQYAAQV----AQSSGMTLDEFRLSLAQQGIAYELFLDDLRKEI 135

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
               +   FV   ++ S+  ++   +       V+Y +     + A+ + ++    +  +
Sbjct: 136 LTGQLRDAFVSRRIKVSDKEIESLIQSMNAQNQVEYHL--GHILIAVQEDADEETQKQAK 193

Query: 219 KYKDNYRAP--------EYKRISYILFDVHEKEKKIEISNDELQAEY------------- 257
           +                E  ++     D  E       +   +   +             
Sbjct: 194 QNALKVMKELKAGADFAETAKVVSSSPDAAEGGDFGWRTESNMPTLFANVVNFLDTGDIS 253

Query: 258 ---------------EKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQS-----LKK 292
                          +K  E+    +      ++        +  A +  Q+     L  
Sbjct: 254 QPIRSPSGFHILKIKDKRGEQQHLVQQTNARHILIRPDAITTESNAKQQLQNIRQRVLAG 313

Query: 293 GKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
              F   A++         LG    ++   + D     ++  L    + +     +FG+ 
Sbjct: 314 EADFGDEAKKHSDDPGSAKLGGNLGWNNLGVYDPVFEQTLTDL-DVNEISEPFQSNFGWH 372

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           I  +   +          ++     ++  K  E+V+   + L +   +   ++E +
Sbjct: 373 IVQLLGRRTDDQTD-AMKRQQAMRILQQRKFGEEVENWIRELRDEAYVKKIVEEDA 427


>gi|323339608|ref|ZP_08079882.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus ruminis ATCC
           25644]
 gi|323093003|gb|EFZ35601.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus ruminis ATCC
           25644]
          Length = 304

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 77/198 (38%), Gaps = 30/198 (15%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             ++  +   + KYK  Y              ++   K I   L          +I++  
Sbjct: 74  KVTDKKVDAEYNKYKKQYGSSFSTVLAQNNYTKSSFKKNIRSSLLLHEALVANTKITDKM 133

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKSLSD 309
           L+A++++ + K        V  ++   + +A+     LKK    K F +LA+E+      
Sbjct: 134 LEAQWKEYEPKIT------VAHILVAKKSDAEAIINELKKDGSYKNFAKLAKEKSTDTGT 187

Query: 310 ISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            S G       + +   D +   + F L +    T  +  S+GY I +  ++K       
Sbjct: 188 KSNGGKLSAFDNTDTSLDSTFKKAAFKLKQGTFTTEPVKTSYGYHIIY--SVKNPGKGKM 245

Query: 365 QEVKKDIANQMRITKASE 382
            + KK++ +Q+   KAS+
Sbjct: 246 SDHKKELKDQIINAKASD 263



 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 33/168 (19%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           GS TV +    KV  S + +S                     +     K++L  ++    
Sbjct: 27  GSKTVATTSGGKVTESEYYSS--------------------LKKTSSGKQVLQEMILNKI 66

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           LD   ++ G +    +V  E       + K  K     F + LA+    +  +  +    
Sbjct: 67  LD---KEYGDKVTDKKVDAE-------YNKYKKQYGSSFSTVLAQNNYTKSSFKKNIRSS 116

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
           L    +    V   + ++ +L+   + Y    +V +I++  +      
Sbjct: 117 LL---LHEALVANTKITDKMLEAQWKEYEPKITVAHILVAKKSDAEAI 161


>gi|320539610|ref|ZP_08039274.1| putative peptidyl-prolyl cis-trans isomerase (PPIase) [Serratia
           symbiotica str. Tucson]
 gi|320030222|gb|EFW12237.1| putative peptidyl-prolyl cis-trans isomerase (PPIase) [Serratia
           symbiotica str. Tucson]
          Length = 435

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/376 (14%), Positives = 119/376 (31%), Gaps = 65/376 (17%)

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
           Q+ G  +  +      L  +I++ L+      Q  + +G+   +  +   IA        
Sbjct: 58  QQDGQPLPDDNL----LRHQIIERLIMDNIQLQMAQKMGITVSNADLDNSIANIAA---- 109

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV-GMFVGGMRPSNLLLDQAKRFY- 186
            NK S +   +RL+ EG+N   Y     K +   +V        +      ++   +   
Sbjct: 110 QNKMSLNQLRNRLSYEGLNYNTYRLQIRKEMLIAEVRNNAVRRRVTILPQEVEALAKQVG 169

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            +N S   + +++  +P   +PS   +    E          +    +    +       
Sbjct: 170 AQNVSDTEMNISHILLPLPENPSQQQMDS-AEALARKLMGELHNGADFGKLAITYSADPQ 228

Query: 247 EISN--------DELQAEYEKN-----------------------------KEKYFSPEI 269
            +           E+   + ++                               +  S   
Sbjct: 229 ALKGGNMGWGKLQEIPTLFAEHLVNAKKGIIVGPIRSGVGFHILKVNDIRGASQSVSVTE 288

Query: 270 RTVEQLVFP-----NQKEA----DEAFQSLKKG-KKFIQ----LAEEQGKSLSDISLGSF 315
                ++          +A        Q +K G  KF      L+++ G +L    LG  
Sbjct: 289 VHARHILLKPSVVMTDDQARTKLASIAQDIKSGRTKFADEAKHLSQDPGSALQGGDLGWA 348

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           S + I D +  D++  L  KG+ +  +H +FG+ +  + + +     +    K      +
Sbjct: 349 SPD-IYDPAFRDALLKL-NKGEISAPVHSAFGWHLIQLLDTR-QVDKTDAAQKNRAYRML 405

Query: 376 RITKASEKVKEDYKRL 391
              K +E+ +   + L
Sbjct: 406 FNRKFAEEAQTWMQEL 421



 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 101/309 (32%), Gaps = 29/309 (9%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +   +++ I   E++A  ++   +  S     +  ++ P 
Sbjct: 128 NYNTYRLQIRKEMLIAEVRNNAVRRRVTILPQEVEALAKQVGAQNVSDTEMNISHILLPL 187

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--L 325
                       +  A +    L  G  F +LA         +  G+     + ++    
Sbjct: 188 PENPSQQQMDSAEALARKLMGELHNGADFGKLAITYSADPQALKGGNMGWGKLQEIPTLF 247

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEK 383
           A+ + + AKKG     I    G+ I  V++I+  S +VS  EV    I  +  +    ++
Sbjct: 248 AEHLVN-AKKGIIVGPIRSGVGFHILKVNDIRGASQSVSVTEVHARHILLKPSVVMTDDQ 306

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
            +     + + +  G +  + +   K +S D       G           P     L ++
Sbjct: 307 ARTKLASIAQDIKSGRT--KFADEAKHLSQDPGSALQGGDLGWASPDIYDPAFRDALLKL 364

Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEEVSS 501
                       ++ P  S     + + +  R  D+          +     K AEE  +
Sbjct: 365 --------NKGEISAPVHSAFGWHLIQLLDTRQVDKTDAAQKNRAYRMLFNRKFAEEAQT 416

Query: 502 KANQLVLEY 510
              +L  + 
Sbjct: 417 WMQELRAQA 425


>gi|325845187|ref|ZP_08168495.1| putative foldase protein PrsA [Turicibacter sp. HGF1]
 gi|325488783|gb|EGC91184.1| putative foldase protein PrsA [Turicibacter sp. HGF1]
          Length = 549

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 72/191 (37%), Gaps = 17/191 (8%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK----FIQLAEE 302
            I++++LQA Y + K             ++  +++ A +    L   +     F +LA+E
Sbjct: 334 PITDEQLQAAYNEYKPNIS------ARHILVEDEETAKDLIAQLDAAEDKEAKFEELAKE 387

Query: 303 QGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
             K  S      LGSF K  +      ++ F+L         +   +GY + +       
Sbjct: 388 YSKDGSASNGGDLGSFGKGQMV-SEFENAAFALNVGEYTEEPVKTQYGYHVIY--KYAED 444

Query: 360 FTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
              SF ++K ++   +R  + ++ K++    +      +  + + + +R   +  ++   
Sbjct: 445 EKPSFDDLKDELETTIRSEEYTQLKLEAILIKYRTEANVKFTDESVQKRYDAIVANIQDS 504

Query: 419 DFAGKDVKGKE 429
             A +      
Sbjct: 505 LSAEEGTDNTT 515


>gi|319786209|ref|YP_004145684.1| SurA domain [Pseudoxanthomonas suwonensis 11-1]
 gi|317464721|gb|ADV26453.1| SurA domain [Pseudoxanthomonas suwonensis 11-1]
          Length = 442

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/402 (10%), Positives = 108/402 (26%), Gaps = 62/402 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    +  S    + +  +   + +      S+      L++++L+ LV     
Sbjct: 34  ERIAAIVEEDVILQSELDLALRNVMAQYAGR-----ESQLPPRPVLERQVLERLVLTRLQ 88

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
                  G+      V   +A       + N  + D    RLA +G++ +E+     + +
Sbjct: 89  VARARQQGIRVSEQEVNQAVAMI----AQQNGLTLDGLRQRLASDGLSFEEFRRSLNEEI 144

Query: 160 SRTDVVGMFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNR------------------ 200
           +   +   F+  +  S   +D    R    +R      +                     
Sbjct: 145 TVQRLRQGFIQRINVSEGEIDAALAREATGSRQYRLAHILVALPDGATAEQITTGQRKVE 204

Query: 201 ---HVPAIADPSNAVLTQWFEKYKDNYR-----------APEYKRISYILFDVHEKEKKI 246
              +V    +   A     +    +               P       +     E    +
Sbjct: 205 GILNVINKGEMDFAAAAVRYSDSPNALEGGDLGWRSLDEIPSAFAQQILQLQPGEIFGPV 264

Query: 247 EISNDELQAEYEKNKEKYFSPEI----RTVEQLVF---------PNQKEADEAFQSLKKG 293
              +        + ++   +P        V  ++            + + D     +  G
Sbjct: 265 RGPSGFQLLRLTEVRDSAQAPAQTVTEYHVRHILVRVNDRQDAATARAKIDTLRARIAGG 324

Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
             F ++A E  +  S       LG F  +          + +L + G  +       G+ 
Sbjct: 325 ADFQEVAREASEDNSTRGQGGDLGWFPADA-YGPEFGGQVTAL-EDGQVSQPFRTDAGWH 382

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           I      + +        +  I + +   K  E+ +   + +
Sbjct: 383 IIERVARRETDVTD-DNRRAQIRDTIGRRKLEEEYERYLQEM 423


>gi|319779226|ref|YP_004130139.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Taylorella
           equigenitalis MCE9]
 gi|317109250|gb|ADU91996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Taylorella
           equigenitalis MCE9]
          Length = 258

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 71/169 (42%), Gaps = 7/169 (4%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            +        + +  +K  +  +E++  Y+   +     +   V  ++  ++  A E +Q
Sbjct: 86  SREQILTTALLSKYIEKNPVKEEEIKKLYDSQIKALGDVKQYNVRHILVKDEDRAKELYQ 145

Query: 289 SL-KKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            L  K   F + A+    +QG +     LG            A ++   AK G  T  + 
Sbjct: 146 QLVDKKIDFAETAKKESIDQGTASGGGVLGWHPSSNFV-PQFAKAV-EEAKIGVLTEPVK 203

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             FGY +  V +I+P+   SF+  K++I N + + K ++  +E  K+ +
Sbjct: 204 SDFGYHLILVDDIRPTPLPSFEASKREIVNALSLEKVNKYTEELKKKAK 252



 Score = 38.4 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 53/154 (34%), Gaps = 7/154 (4%)

Query: 467 QIKESIPARDRKLEEVLT-DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           +IK+   ++ + L +V   +V+      +       +A +L  +   +  +F +  K   
Sbjct: 109 EIKKLYDSQIKALGDVKQYNVRHILVKDE------DRAKELYQQLVDKKIDFAETAKKES 162

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
               T +    +            ++        V   P+++   Y +  V + +  P+ 
Sbjct: 163 IDQGTASGGGVLGWHPSSNFVPQFAKAVEEAKIGVLTEPVKSDFGYHLILVDDIRPTPLP 222

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
             +     +   ++ + ++     LK +  +  +
Sbjct: 223 SFEASKREIVNALSLEKVNKYTEELKKKAKIKTN 256


>gi|329765286|ref|ZP_08256866.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329138192|gb|EGG42448.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 92

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADS 328
             ++   Q EA    + +KKG+KF +LA+E     G +  D SLG F+K  +      ++
Sbjct: 8   SHILVEKQSEAIAICERIKKGEKFGKLAKELSIDTGSAKKDGSLGYFTKGMMVKP-FEEA 66

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAH 352
            F L + G+ +  +   FGY I  
Sbjct: 67  AFKL-QIGEMSEPVKSEFGYHIIK 89


>gi|212550676|ref|YP_002308993.1| peptidyl-prolyl cis-trans isomerase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548914|dbj|BAG83582.1| putative peptidyl-prolyl cis-trans isomerase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 711

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 103/287 (35%), Gaps = 40/287 (13%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS-----GSSTVVSVGRQKVPFSSF 56
           L+ IR   ++ +  + + V    F+   + D L S S         +V +  + +    +
Sbjct: 4   LKKIRN--KSLLLVMVVGVALFSFI---IGDFLRSGSAFINQKKENIVVINGEAINCQDY 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR-- 114
               +  +    +       ++      + + IL+ ++    L +  + +GL        
Sbjct: 59  QTRVEDYINNAIRNNNNQPLTDD-EQYQIKQMILNEMIDDILLFKEAKKLGLVVSKEEYK 117

Query: 115 -------VWGEIARSPLFHGKDN-KFSHDV---FVSRLAREGINEKEYID---------H 154
                  +   + + P F      KF       F+  +  E  + ++             
Sbjct: 118 DLVMGDNISPLLQQIPSFRNPKTKKFDKTALLHFLQNIENEDYSTEQSSRLMSIKKAWLA 177

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLD--QAKRFYFENR---SVDYIVLNNRHVPA-IADP 208
             K + +  +   F   +   ++L +  +A+ FY E +     DY+  +   +P    + 
Sbjct: 178 IEKQIIKEQLKKKF-NTLFTYSILTNVLEARAFYEEKKINVDFDYVAQSYNSIPDREVNV 236

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
           S+  + + + + K+ YR  E   + +I  ++   +K  ++  ++L+ 
Sbjct: 237 SDIEIQKRYNECKNLYRQKEGALVDFIALNIVPSKKDYQMIENKLKE 283



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 108/325 (33%), Gaps = 27/325 (8%)

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTP 340
           D   Q +KKG  F  +A    K  +   LG  ++  +    D+   D I +         
Sbjct: 379 DSLIQVVKKGTPFSDMASTLSKGKTTGELGWMTESQLISRLDIQFKDKILTAKINEPV-- 436

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN-QMRITKASEKVKEDYKRLEEFLALGT 399
           VI  + G  +  V              K  IAN Q+++  + E     Y R  +F++   
Sbjct: 437 VIKSNIGIFLVQVLEKTKPIK------KYKIANIQIQVVPSQETKTRLYNRFIQFISSNH 490

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           S+ ++    K     +       KD     +  I    Q++  +F        D      
Sbjct: 491 SIADLRENAKSSGFSIQTDVEISKDQ--ININHIQNTRQIVQWIFNNKKGAISDIFECQN 548

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY-SKEGKNFR 518
              +  V IKE +    R L+ + + +K++    K       KA +L+ +   K+    +
Sbjct: 549 SEYFAVVAIKEHLREGFRPLKSISSVLKRNLINEK-------KALKLISDLKVKKLNTLK 601

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGI--SQVFSGPVEMVKCFPIENGLSYVVFKV 576
              + +  +  +   +N   +     G + I   +V   P+  +   P        V  +
Sbjct: 602 QYAEAMNTTPQSVQSVNFATSYISGIGKEPILNVKVPEAPINQI-SGPYAGKNKIYVLYI 660

Query: 577 TNSKVGPVQEKDK--FISYLTQMMN 599
           TN  +       K        Q M 
Sbjct: 661 TNKNISKEPYDTKCFLKQAQIQNMR 685


>gi|187250598|ref|YP_001875080.1| hypothetical protein Emin_0179 [Elusimicrobium minutum Pei191]
 gi|186970758|gb|ACC97743.1| hypothetical protein Emin_0179 [Elusimicrobium minutum Pei191]
          Length = 231

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 69/191 (36%), Gaps = 10/191 (5%)

Query: 24  PFLI----WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
            F+      G +     +S   T+  VG +K+    +    +Q+   + +      + + 
Sbjct: 18  SFIGGLFYAGYNSFSVGLSNHETIAKVGNEKIKARQYNRIVEQQERELRRLATEDFDDDG 77

Query: 80  ARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
              +  L ++ L  L+  + + Q  E  G+      +   I  +P F   +  FS   +V
Sbjct: 78  GSLLNYLKQRALQTLMFQSAMVQSAEKYGIHTPDFEIAYMIQTAPAFTN-NGLFSKQAYV 136

Query: 139 SRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV-DYIV 196
             +  +  +   E+ +   + +    +  + +   + +   L     +  +  ++ DY  
Sbjct: 137 WTVRNQLMMTPAEFENQERRNMQMNKMANIIMSSYKSTPEEL--LFNYKTQYGTIKDYAK 194

Query: 197 LNNRHVPAIAD 207
                +P +A+
Sbjct: 195 KKEDFIPTVAE 205


>gi|78357080|ref|YP_388529.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78219485|gb|ABB38834.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 329

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 104/356 (29%), Gaps = 81/356 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +  V  V  + +           +L      +  +  ++ A    ++ + L++++    +
Sbjct: 45  NKIVAVVNGEIITQYDLQARAASKLHRAG--LSALDPADAAAIKKIESETLEDMIVDRLM 102

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E   L AD   V  E+                     LAR  I E + +       
Sbjct: 103 VQEAERYNLGADDAAVDNELRS------------------LLARMQITEDQLVAQLKSE- 143

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
              D+   F  G+  +N++  +   F                V      +   +  ++E+
Sbjct: 144 -GQDLD--FYRGLIRNNIMRQKLLSFM---------------VSRKVVVTRQDIEAYYEE 185

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +K+ Y   +   +S                                         LVF  
Sbjct: 186 HKNEYMQDKSISLSL----------------------------------------LVFAP 205

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGD 337
             + +   + +++G   F    ++     +  S G+  K ++   VS           G 
Sbjct: 206 TADPEPVLRDIREGNISFADAVKKYSVGPAASSGGAIGKLDWSSLVSQWKQALEGVAAGG 265

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            +  I         HV  +         EV  +I  ++R     E+ +E  ++L E
Sbjct: 266 LSRPIEYDGRAAYLHVDEVIEGTVRPVDEVADEIEAKLREPMLKERFEEYTRKLRE 321


>gi|326794311|ref|YP_004312131.1| Chaperone surA [Marinomonas mediterranea MMB-1]
 gi|326545075|gb|ADZ90295.1| Chaperone surA [Marinomonas mediterranea MMB-1]
          Length = 419

 Score = 85.4 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/399 (13%), Positives = 114/399 (28%), Gaps = 76/399 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  Q +  S     ++     I              + G+ ++IL+ L+     
Sbjct: 27  DGVVAIVDSQPLLESDINTRFQVIKDRI---------PGGVMTAGIRRQILNQLIEETVQ 77

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV--FVSRLAREGINEKEYIDHYTK 157
             + + +G+          +           KFS D+      L+R+GI+   Y      
Sbjct: 78  INYGKRLGIRIPQENTDAAVLNVAQ------KFSTDLGGLKQLLSRQGIDYSRYRQQIEN 131

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV--LNNRHVPAIADPSNAVLTQ 215
            +    V    +      ++   +   F   +++       L+ RH+   A      L +
Sbjct: 132 EILINAVKQRVIKDRI--SITEQEISDFISASQNTQSSKNELHLRHIIVRAKNETEALAK 189

Query: 216 WFE-----KYKDNYRAPE--YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP- 267
             +       ++++      Y    + L       + +              K     P 
Sbjct: 190 IKQIASGIASENDFINQAITYSDGQFALEGGDLGWRPVSQLPALFTKAINTQKGPLIGPL 249

Query: 268 ------------EIRTV----------EQLVFP---------NQKEADEAFQSLKKGKKF 296
                       E R+             ++                +E ++    G+ F
Sbjct: 250 KSNAGYHLLWVIEKRSANVQLQAQTKTRHILLQPNEIRTEQQTVALINELYKRAMSGEDF 309

Query: 297 IQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LA E    QG +L    LG      +   +    + +  K G  +      FG+ I  
Sbjct: 310 AGLASEYSDDQGSTLQGGDLGWVKLGMMV-PAFEK-VMTATKTGAVSKPFRSQFGWHILK 367

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           V + +          K+DI+  ++  +A + +    +  
Sbjct: 368 VEDRR----------KEDISESVKQQQAEKALVAQKQDF 396



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 89/296 (30%), Gaps = 29/296 (9%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN 279
             YR      I          + +I I+  E+      ++    S     +  ++    N
Sbjct: 123 SRYRQQIENEILINAVKQRVIKDRISITEQEISDFISASQNTQSSKNELHLRHIIVRAKN 182

Query: 280 QKEADEAFQSLKKG----KKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSL 332
           + EA    + +  G      FI  A        +L    LG      +P +    +I   
Sbjct: 183 ETEALAKIKQIASGIASENDFINQAITYSDGQFALEGGDLGWRPVSQLPAL-FTKAIN-- 239

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +KG     +  + GY +  V   + +      + +    + +         ++    + 
Sbjct: 240 TQKGPLIGPLKSNAGYHLLWVIEKRSANVQL--QAQTKTRHILLQPNEIRTEQQTVALIN 297

Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
           E      S ++ +      S D       G     K    +P  E+++     K   +SK
Sbjct: 298 ELYKRAMSGEDFAGLASEYSDDQGSTLQGGDLGWVKLGMMVPAFEKVMTA--TKTGAVSK 355

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
                     +  +++++              D+ +  K  +  + + ++    VL
Sbjct: 356 PFRSQF---GWHILKVEDRR----------KEDISESVKQQQAEKALVAQKQDFVL 398


>gi|89891030|ref|ZP_01202538.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium BBFL7]
 gi|89516674|gb|EAS19333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium BBFL7]
          Length = 658

 Score = 85.4 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 15/171 (8%)

Query: 269 IRTVEQLVFPNQKEA---------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----F 315
             TV  ++  + ++A          + ++ L++  KF +LA E    +S  S G     F
Sbjct: 231 EVTVSHIMTFDARDASEKTAAKRIQDVYKQLQESGKFEELAREFSDDMSSASRGGKLDRF 290

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
               +      D  F L +KG ++      FG+ I  +    P    S++E+   +  ++
Sbjct: 291 GTGGLNAPVFEDIAFGLEEKGSYSAPFKSKFGWHIVKLIEKHP--VGSYEELAPSLKEKI 348

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
           R +  + K+ + + +           +E+ +       D  L +    D  
Sbjct: 349 RKSPRARKITDSFNKGLREKYNVKRSEEVLKVLNETITDSILTNSWQFDPS 399



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 86/251 (34%), Gaps = 47/251 (18%)

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             K++Y+    +  +Y            E++   ++  Y++ K             ++  
Sbjct: 84  DNKESYK---KELNNYRQSLAQAYLTDTEVTESLVREAYDRKKR------EVNASHILVK 134

Query: 279 ------------NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDV 323
                          + +     L  G  F QLA  +     + ++  LG FS  +    
Sbjct: 135 VGPGDTPHDTLKAWNKINSIKNELDNGADFSQLARTKSEGPSAGNEGKLGWFS-VFRMVY 193

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF-------TVSFQEVKKDIANQMR 376
              ++ F+    G  + +    FGY I  V   +P+         ++F       A    
Sbjct: 194 PFENAAFN-TPVGKHSDIFRTDFGYHIVKVFEDRPARGEVTVSHIMTFD------ARDAS 246

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK-DVKGKEVAAIPY 435
              A++++++ YK+L+E        +E++R     S D+      GK D  G      P 
Sbjct: 247 EKTAAKRIQDVYKQLQE----SGKFEELAREF---SDDMSSASRGGKLDRFGTGGLNAPV 299

Query: 436 KEQLLFRVFGK 446
            E + F +  K
Sbjct: 300 FEDIAFGLEEK 310



 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 74/196 (37%), Gaps = 26/196 (13%)

Query: 210 NAVLTQWFE-----KYKD-NYRAPEYKRISYILFDVHEKEKKIEISNDEL--QAEYEKNK 261
           +  +  +++     + KD  +   EYK    +LFD+ E +   +   D L  QA Y+ + 
Sbjct: 451 DKSIAAYYDRNLVNENKDFAFIYDEYKE-GLLLFDLLETKIWNKAKEDSLGQQAYYDLHT 509

Query: 262 EKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319
           +KY     R V+ ++     ++ A +  Q L KG    ++ E         ++   +K  
Sbjct: 510 DKYQW--KRRVDIILTQNTTEEVATQVQQLLMKGTSREEIKER-------FNIDGRTKVM 560

Query: 320 IPDVSLADSIFSLA-----KKGDFTPVIHGSFG-YVIAHVSNIKPSFTVSFQEVKKDIAN 373
           + +  + ++   L      K+G  +       G Y +  V  I      + +E +  + N
Sbjct: 561 MSNGVVEETYNRLPDNFEIKEGVSSIYYDEKTGFYKVILVKEILEPTQKTLEEARGAVIN 620

Query: 374 QMRITKASEKVKEDYK 389
             +     + +     
Sbjct: 621 DYQQQLEKDWMSSLRN 636



 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 85/250 (34%), Gaps = 26/250 (10%)

Query: 383 KVKEDYKRLEEFLALGTSMDEIS--RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
           K       ++  L  G    +++  + E   + +   + +              +     
Sbjct: 146 KAWNKINSIKNELDNGADFSQLARTKSEGPSAGNEGKLGWFSVFRMVYPFENAAF----- 200

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
                 + P+ K   +   D  Y  V++ E  PAR     EV       +     +E+ +
Sbjct: 201 ------NTPVGKHSDIFRTDFGYHIVKVFEDRPARG----EVTVSHIMTFDARDASEKTA 250

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ--VFSGPVE 558
           +K  Q V +  +E   F ++ +     + + ++  ++D          + +   F    +
Sbjct: 251 AKRIQDVYKQLQESGKFEELAREFSDDMSSASRGGKLDRFGTGGLNAPVFEDIAFGLEEK 310

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM-----NKDLLDSVIAYLKSQ 613
                P ++   + + K+      PV   ++    L + +      + + DS    L+ +
Sbjct: 311 GSYSAPFKSKFGWHIVKLIEKH--PVGSYEELAPSLKEKIRKSPRARKITDSFNKGLREK 368

Query: 614 YSVTVHDNLI 623
           Y+V   + ++
Sbjct: 369 YNVKRSEEVL 378


>gi|55980571|ref|YP_143868.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB8]
 gi|55771984|dbj|BAD70425.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB8]
          Length = 337

 Score = 85.4 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 65/153 (42%), Gaps = 8/153 (5%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                +I +S   L+A +     +Y  P +     L+ P ++E +EA   L +G+ F ++
Sbjct: 172 ARYRSRIAVSRAALKALWLL-SPEYRHPTLYCARHLLVPTREEVEEARLRLARGEAFAEV 230

Query: 300 A----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A    ++ G       LG   +      +  +++  L + G+ +  +   FGY +  +  
Sbjct: 231 ARAVSQDPGSREEGGDLGCAPEGTYV-PAFEEALVRL-RPGEVSGPVRTEFGYHLILLER 288

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           + P      +EV   +  ++   +A E+++E  
Sbjct: 289 VVPPGRYPLEEVAPLLEKEVA-DRAWERLEEAL 320


>gi|119896837|ref|YP_932050.1| peptidylprolyl isomerase [Azoarcus sp. BH72]
 gi|119669250|emb|CAL93163.1| probable peptidylprolyl isomerase [Azoarcus sp. BH72]
          Length = 285

 Score = 85.4 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 64/179 (35%), Gaps = 18/179 (10%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            + +           +   +   E +  Y  + +++ +PE RTV  ++        +  +
Sbjct: 97  QRDLLVEAVMERVGARAGSVDETEAEIFYYAHVDRFRAPERRTVRHILVTINDAYPDNRR 156

Query: 289 SLK-------------KGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSL 332
            +              K ++F + A +      +L+   LG   +  +    L   +F +
Sbjct: 157 EVASRRIHEICKRLNNKPERFEEQAMKHSECPTALNGGLLGELPRGTLY-PELDAVLFEM 215

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            K G  + V+    G+ +     I+P   +SF EV + +  Q+   +  +  +     L
Sbjct: 216 -KAGQLSGVVESEIGFHLLRCDAIQPERVLSFAEVSESLRQQLTAERGRKDARRWLTEL 273


>gi|161504788|ref|YP_001571900.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866135|gb|ABX22758.1| hypothetical protein SARI_02912 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 428

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/371 (13%), Positives = 116/371 (31%), Gaps = 61/371 (16%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENR 190
           + D   SRLA +G+N   Y +   K +  ++V        +      +D   +    +N 
Sbjct: 110 TLDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQND 169

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIEIS 249
           +   + L++  +    +P++  +     + +      E +    +    +     +  + 
Sbjct: 170 ANTELNLSHILIALPENPTSGQVND--AQRQAESIVEEARNGADFGKLAITYSADQQALK 227

Query: 250 N--------DELQAEYEKNKEKYFSPE-----------------------------IRTV 272
                     EL   + +        +                                 
Sbjct: 228 GGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSPNISVTEVHA 287

Query: 273 EQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEY 319
             ++         ++A    +E    +K GK  F   A+E  +     + G    ++   
Sbjct: 288 RHILLKPSPIMTDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPD 347

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           I D +  D++  L K G  +  +H SFG+ +  + + +     +    K      +   K
Sbjct: 348 IFDPAFRDALTKLHK-GQMSAPVHSSFGWHLIELLDTRK-VDKTDAAQKDRAYRMLMNRK 405

Query: 380 ASEKVKEDYKR 390
            SE+     + 
Sbjct: 406 FSEEAATWMQE 416



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 77/239 (32%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
               YR    K +       +E  ++I +   E+ A  ++   +  +     +  ++   
Sbjct: 124 NYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDANTELNLSHILIAL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       Q++A+   +  + G  F +LA         +  G      I +   + 
Sbjct: 184 PENPTSGQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       ++ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSPNISVTEVHARHILLKPSPIMTDQQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   + +   +  G +    +   K  S D    +  G           P     L ++
Sbjct: 304 RLKLEEIAADIKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 360


>gi|189345572|ref|YP_001942101.1| SurA domain [Chlorobium limicola DSM 245]
 gi|189339719|gb|ACD89122.1| SurA domain [Chlorobium limicola DSM 245]
          Length = 437

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 68/514 (13%), Positives = 149/514 (28%), Gaps = 115/514 (22%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           L++L +PF    +S    +      V  +G + V  S              +  G     
Sbjct: 11  LILLCMPF----ISGTAVAAIADRIVAVIGNEVVLQSELDERVLMTHMQYPESKGDK--- 63

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
                  L +K+L++L+    +    +      D   + G +          ++FS    
Sbjct: 64  ------TLPEKVLNSLIDQKVILAKAKIDSTGIDDAALEGLVGERM--KVLASRFSSR-- 113

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
               +R G +         + +    ++                                
Sbjct: 114 EEMESRFGKSSLVIRRELRQEIKNQQLIESLR---------------------------- 145

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNY-RAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
             R   +    ++     ++E  K      PE   +S IL                    
Sbjct: 146 --RKKLSGVTVTHEESMAFYEANKSRLPVIPEGVSVSQILKYPD---------------- 187

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISL 312
                    + E R+        +   ++    LK G  F  LA++  +          L
Sbjct: 188 --------VTAESRS------GAKAMIEKVQAELKGGADFGALAKKYSQDPGSAQLGGDL 233

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF------TVSFQE 366
           G   K  +   S  ++ + L K+G  + V+   +G+ +  + N + +        V+F  
Sbjct: 234 GYVQKGELI-QSFENAAYGL-KEGQVSGVVETRYGFHLIQLLNKEVNSLHVRHILVAFDR 291

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLVDFAGKD 424
            + D A  + + ++            + LA   +  E++ +     VS  L     +   
Sbjct: 292 SRSDAAGTIGLLRSIRA---------DVLAGKATFAEMAGKYSDDPVSARLGGAILSASS 342

Query: 425 VKGKEVAAI-PYKEQLLFRV-FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK---- 478
               +++ + P   +++  +    D            D  Y   ++ E I +        
Sbjct: 343 KNVFQLSTLRPQLREVIGTLKQSGDISEPVKVDPPQGDSFYAIFRLNEKIGSHQLNPRQD 402

Query: 479 ---LEEV-----LTDVKKDWKTVKTAEEVSSKAN 504
              LEE+        + ++W      E    K++
Sbjct: 403 YALLEEIVLENKRQRLYEEWLQELRKEITVRKSD 436


>gi|297181079|gb|ADI17278.1| parvulin-like peptidyl-prolyl isomerase [uncultured alpha
           proteobacterium HF0070_17D04]
          Length = 355

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 4/144 (2%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           EI+ + +QA Y+       S E  T   ++   ++EA      L  G  F +LA E+   
Sbjct: 187 EITEEAIQAAYDTYVADTGSRETVTASHILVETEEEAKAIIDQLMDGADFAELAREKSTG 246

Query: 307 LSDISLGSFSKEYI--PDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVS 363
            S    GS           +   + F +   G F+   +   FG+ +  VS        +
Sbjct: 247 PSGPGGGSLGSFGRGQMVPAFEAAAFGMP-VGSFSDNPVQTQFGWHVIQVSEKGIQEAPA 305

Query: 364 FQEVKKDIANQMRITKASEKVKED 387
             +++  IA  +     +  V+  
Sbjct: 306 LDQMRDQIAANLSRQSFARIVETL 329



 Score = 45.4 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 5/138 (3%)

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
              V      V+T EE  +  +QL+     +G +F ++ +            +       
Sbjct: 207 RETVTASHILVETEEEAKAIIDQLM-----DGADFAELAREKSTGPSGPGGGSLGSFGRG 261

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
                  +  F  PV      P++    + V +V+   +      D+    +   +++  
Sbjct: 262 QMVPAFEAAAFGMPVGSFSDNPVQTQFGWHVIQVSEKGIQEAPALDQMRDQIAANLSRQS 321

Query: 603 LDSVIAYLKSQYSVTVHD 620
              ++  L+   ++ +  
Sbjct: 322 FARIVETLRVGTTIEIRP 339


>gi|257470876|ref|ZP_05634966.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium ulcerans ATCC
           49185]
 gi|317065078|ref|ZP_07929563.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690754|gb|EFS27589.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 584

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 145/384 (37%), Gaps = 55/384 (14%)

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           + + + R  + E  +     +M  RT         +  +N   D+A+    E      I 
Sbjct: 235 YKAYVERNEMEEDGFAVSNIEMAKRTL------NNLFITNGDRDKARELSKEYYRAQ-IK 287

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
           L    +       +  L         +Y+  EYK+  +        +  +  S+ +L+  
Sbjct: 288 LAKIAIERGITV-DETL-------PLDYKFEEYKKGLF-----ENIKNSLNPSDAQLKEY 334

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK---------GKKFIQLAEEQG--- 304
           +EKNK  Y +         +      A++   +  K          + F ++A++     
Sbjct: 335 FEKNKLVYDTFPSSDSYIAILKVDASAEDKAAAKAKAEELLKTLTPENFAEVAKKNSDGP 394

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVS 363
            S +   LG FSK+ + +     ++FS  + G   P  +   FG  + ++ + K      
Sbjct: 395 SSPNGGDLGWFSKKDMVEP-FQKAVFS-GEVGKIYPQPVETIFGEHLIYIEDRKD----- 447

Query: 364 FQEVKKDIANQMRITKASEKV----KEDYKRLEEFLALGT-SMDEISRREKIVSIDLPLV 418
             E +   ++ + + K SE      K + + ++E LA GT + + +S+  K    D+   
Sbjct: 448 -DEERAKASHILIVPKVSEATINIKKAEIEAVKEKLANGTVNFETLSKENK----DVLQS 502

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARDR 477
               K      +  + Y E L   +F  D PL+K  T  + D  Y++ +  E    A D 
Sbjct: 503 SLFSKIDDTGYIPGLGYNEALTKLIF--DAPLNKVQTALIEDKFYIFKKTNEVKYKAAD- 559

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSS 501
              E+   VK D+   KT EE+  
Sbjct: 560 -FNELKDRVKDDYLNSKTQEELKK 582



 Score = 67.7 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 88/640 (13%), Positives = 201/640 (31%), Gaps = 100/640 (15%)

Query: 4   IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS------STVVSVGRQKVPFSSFI 57
            IRK  +    K  + ++ +  ++ G    L S+ GS      +    +   K+      
Sbjct: 9   AIRKFRKQ--MKPIIWLVTILMVLGGGYATLSSIIGSMSNGHSNYAFKLNGNKISKFEVE 66

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            +    +   S+ +G  V+      +       D +V+     +  + + ++  +G V  
Sbjct: 67  KTKATMIDGYSRYLGDKVDRSLIDIL-----AFDEVVNKNLTLEMADKLKVKVSNGDV-- 119

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
                     +++  + D F   L  +G  +  +       L+    +     G+ P++ 
Sbjct: 120 ---NDQYDKIENSIGNRDQFKRMLQVQGYTKNTFKKELKDNLTVEQTLAKIQEGINPTD- 175

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             ++  ++Y +N    Y   + + +  + +     L Q              K I   + 
Sbjct: 176 --EEINKYYEDNL---YTRFSGKPLSDVKNEVITDLKQ-------------TKGIEEYVL 217

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----------IRTVEQLVFPNQKEADEA 286
            + +  K +++  + +  EY+   E+    E            RT+  L   N       
Sbjct: 218 LLDKARKNMKL--ENVSQEYKAYVERNEMEEDGFAVSNIEMAKRTLNNLFITNGDRDKA- 274

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGS 345
                      +L++E  ++   ++  +  +    D +L  D  F   KKG F  +   S
Sbjct: 275 ----------RELSKEYYRAQIKLAKIAIERGITVDETLPLDYKFEEYKKGLFENI-KNS 323

Query: 346 FGYVIAHVSNIKPSFTVSFQE--VKKDIANQMRITKASEKVKEDYKRLEEFLA--LGTSM 401
                A +        + +            +++  ++E       + EE L      + 
Sbjct: 324 LNPSDAQLKEYFEKNKLVYDTFPSSDSYIAILKVDASAEDKAAAKAKAEELLKTLTPENF 383

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEV---AAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            E++++                   G ++   +     E     VF  +        V  
Sbjct: 384 AEVAKKN----------SDGPSSPNGGDLGWFSKKDMVEPFQKAVFSGEVGKIYPQPVET 433

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV--SSKAN-QLVLEYSKEGK 515
             G ++           DRK +E            K +E      KA  + V E    G 
Sbjct: 434 IFGEHLIYI-------EDRKDDEERAKASHILIVPKVSEATINIKKAEIEAVKEKLANGT 486

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFG----YDGISQVFSGPVEMVKCFPIENGLSY 571
              +        +L ++  +++D+     G          +F  P+  V+   IE+   +
Sbjct: 487 VNFETLSKENKDVLQSSLFSKIDDTGYIPGLGYNEALTKLIFDAPLNKVQTALIEDK--F 544

Query: 572 VVFKVTNSKVGPVQEKDKFISYLT----QMMNKDLLDSVI 607
            +FK TN       + ++    +         ++ L  +I
Sbjct: 545 YIFKKTNEVKYKAADFNELKDRVKDDYLNSKTQEELKKLI 584


>gi|221236099|ref|YP_002518536.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
 gi|220965272|gb|ACL96628.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
          Length = 323

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 69/177 (38%), Gaps = 6/177 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++ D ++  Y + ++     E     Q++  +Q EA+   + L  G  F  LA E+   
Sbjct: 130 AVTEDAIRKLYAEQQKLSKRSEEIRARQILVGSQAEAESIKKLLATGASFDALAMERSTD 189

Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                +   LG F+ + +P+     +    A+KG          G+V+  V + +    +
Sbjct: 190 QATRFNGGDLGYFTLDVMPEAYG--AALKDAQKGALIGPFAAEGGWVLVKVEDKRTEEPI 247

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
           + +  +  I   +   +  + +++     +  + +G S +  +   +  +   P + 
Sbjct: 248 TLEAARPQIIRFLTYDQVRDILEKLRGSAKVEMMIGKSQELPAGSAQEPASAPPELQ 304


>gi|261338952|ref|ZP_05966810.1| hypothetical protein ENTCAN_05153 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318779|gb|EFC57717.1| peptidylprolyl cis-trans isomerase SurA [Enterobacter cancerogenus
           ATCC 35316]
          Length = 428

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 113/365 (30%), Gaps = 57/365 (15%)

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
            +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  + D 
Sbjct: 58  QQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDEQLDQAIANI----AKQNNMTPDQ 113

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDV---------------VGMFVGGM--------- 172
             SRLA +GI+   Y +   K +  ++V               V      +         
Sbjct: 114 MRSRLAYDGISYATYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTE 173

Query: 173 ---------RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
                     P N   DQA     + RS+     N      +A   +A            
Sbjct: 174 LNLSHILIPLPENPTSDQAAEAESQARSIVEQARNGGDFGKLAITYSADQQALKGGQMGW 233

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFP 278
            R  E   +        +K   +      +     K  +     +           ++  
Sbjct: 234 GRIQELPSLFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLK 293

Query: 279 ---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSL 325
                     + + ++    +K GK  F   A+E  +     + G    ++   I D + 
Sbjct: 294 PSPIMTDDQARAKLEQISADIKSGKTSFANAAKEFSQDPGSANQGGDLGWAAADIYDPAF 353

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            D++  ++K G  +  +H SFG+ +  + + + +   +    K      +   K SE+  
Sbjct: 354 RDALMKMSK-GQISAPVHSSFGWHLIELLDTR-NVDKTDAAQKDRAYRMLFNRKFSEEAA 411

Query: 386 EDYKR 390
              + 
Sbjct: 412 TWMQE 416



 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 17/234 (7%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278
             YR    K +       +E  +++ I   E+ A  ++   +  +     +  ++ P   
Sbjct: 126 ATYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTELNLSHILIPLPE 185

Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328
                     + +A    +  + G  F +LA         +  G      I +  SL   
Sbjct: 186 NPTSDQAAEAESQARSIVEQARNGGDFGKLAITYSADQQALKGGQMGWGRIQELPSLFAQ 245

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKVKE 386
             S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       ++ + 
Sbjct: 246 ALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSPIMTDDQARA 305

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
             +++   +  G +    +   K  S D    +  G           P     L
Sbjct: 306 KLEQISADIKSGKT--SFANAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDAL 357


>gi|239996025|ref|ZP_04716549.1| survival protein surA [Alteromonas macleodii ATCC 27126]
          Length = 427

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 116/365 (31%), Gaps = 59/365 (16%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  +  Q V   S I++  Q++   ++     + S+RA    L  + ++ L++ +   Q 
Sbjct: 28  VAVIVDQGVVLESEIDALVQDVKRNAEANNQQLPSDRA----LRTQAIERLITKSLQLQM 83

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR- 161
            E +G+     ++   I+              +   ++LA EGI   +Y +   + +   
Sbjct: 84  AERMGIRISDPQLEQTISNIAANQNAT----IEELRAQLAAEGIAYDDYREDIREEVIMG 139

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFEN-RSVDYIVLNNRHVPAIADPSNAVLTQWFE-- 218
                     +  +   ++       +   +     L +  +    +P++  +    E  
Sbjct: 140 EVRRANVRRRVYITPQEIETLIDLMEQQGATQAEYRLGHILIGFPPEPTDEDIQSARERA 199

Query: 219 -------KYKDNY-----------RAPEYKRISYILFDVHEKEKKIEISNDE-------- 252
                  +   ++            A E   + ++  +         I N +        
Sbjct: 200 DKVISLLESGSDFAKIAIASSSGNEALEGGDMGWLNINAMPTLFAEAIQNKDKDALVGPI 259

Query: 253 -------LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAF----QSLKKGK-K 295
                  +    +    +  + E      ++       ++ +A        + +K G+  
Sbjct: 260 RSGAGFHILKVLDTRGIEKVTVEEVNSRHILVKPSIILSEDKAKAMLNRFKEEVKNGEAD 319

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F +LA+E  +       G       P+       D++  L + G+F+  +    G+ +  
Sbjct: 320 FAELAKEHSEDPGSALRGGELGWSDPNNYVPEFKDALAQL-EPGEFSEPVRTVHGWHLIQ 378

Query: 353 VSNIK 357
           +   +
Sbjct: 379 LIERR 383



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 91/270 (33%), Gaps = 23/270 (8%)

Query: 198 NNRHVPAIADPSNAVLTQWFEK---YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
              ++ A  + +   L           D+YR    + +           +++ I+  E++
Sbjct: 99  TISNIAANQNATIEELRAQLAAEGIAYDDYREDIREEVIMGEVRRANVRRRVYITPQEIE 158

Query: 255 AEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQSLKKGKKFIQLAEE 302
              +  +++  +     +  ++               ++ AD+    L+ G  F ++A  
Sbjct: 159 TLIDLMEQQGATQAEYRLGHILIGFPPEPTDEDIQSARERADKVISLLESGSDFAKIAIA 218

Query: 303 QGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
                 +L    +G  +   +P    A++I +   K      I    G+ I  V + +  
Sbjct: 219 SSSGNEALEGGDMGWLNINAMP-TLFAEAIQN-KDKDALVGPIRSGAGFHILKVLDTRGI 276

Query: 360 FTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             V+ +EV    I  +  I  + +K K    R +E +  G    + +   K  S D    
Sbjct: 277 EKVTVEEVNSRHILVKPSIILSEDKAKAMLNRFKEEVKNGE--ADFAELAKEHSEDPGSA 334

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
              G+         +P  +  L ++   + 
Sbjct: 335 LRGGELGWSDPNNYVPEFKDALAQLEPGEF 364


>gi|170723956|ref|YP_001751644.1| SurA domain-containing protein [Pseudomonas putida W619]
 gi|169761959|gb|ACA75275.1| SurA domain [Pseudomonas putida W619]
          Length = 441

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/413 (13%), Positives = 131/413 (31%), Gaps = 73/413 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S      ++    I+++ G V  +       L++++L+ L+     
Sbjct: 33  DRVVAIVDNDVVMQSQLDQRVQEVQQTIAKRGGGVPPTS-----ALEQQVLERLIVENLQ 87

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID------ 153
            Q  E  G+      +   I        + N  S D F + LAR+G++  +  +      
Sbjct: 88  LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALARDGLSFDDAREQVKREM 143

Query: 154 -----HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
                   ++  R  V    V     S    D  K    E+  +  I++         D 
Sbjct: 144 IISRVRQRRVAERIQVSEQEVKNFLAS----DMGKMQMSEDYRLANILIPTPEGANSDDI 199

Query: 209 SNAVLT--QWFEK----------------------------YKDNYRAPEYKRISYILFD 238
             A       +++                             K     PE+ ++   +  
Sbjct: 200 QKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAAQLPPEFAKLLSSMAT 259

Query: 239 VHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVF---------PNQKEADEAFQ 288
               +     S   +    EK    +    +   V  ++            ++ A+  ++
Sbjct: 260 GDITQPLRIPSGFIIIKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATEQLAERLYE 319

Query: 289 SLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            +K G+ F +LA+    + G +L+   L       +          +  ++G  T     
Sbjct: 320 RIKGGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGVVTKPFKT 377

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396
            +G+ +  V   + + +   ++ ++  A N +R  K  E+++   +++ +   
Sbjct: 378 QYGWHVLEVLGRRATDST--EQAREQQAMNVLRNRKYDEELQTWLRQIRDEAY 428



 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 88/253 (34%), Gaps = 17/253 (6%)

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
            KA+ KV + Y++L +    G    +++         L   +   +          P   
Sbjct: 200 QKAARKVGDVYQQLRQ----GADFGQMAIANSASENALEGGEMGWRKAAQLP----PEFA 251

Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKTA 496
           +LL  +   D        + +P G ++ ++++E     +  L +EV         +   +
Sbjct: 252 KLLSSMATGD----ITQPLRIPSG-FIIIKLEEKRGGSENVLRDEVHVRHILIKPSEIRS 306

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
           E  + +  + + E  K G++F ++ K+      +      ++  +         +  +  
Sbjct: 307 EAATEQLAERLYERIKGGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA 366

Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQ 613
            + V   P +    + V +V   +     E+    + ++ L      + L + +  ++ +
Sbjct: 367 QQGVVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQAMNVLRNRKYDEELQTWLRQIRDE 426

Query: 614 YSVTVHDNLIQRY 626
             V +      + 
Sbjct: 427 AYVEIKLPGADQA 439


>gi|303236785|ref|ZP_07323364.1| PPIC-type PPIASE domain protein [Prevotella disiens FB035-09AN]
 gi|302482953|gb|EFL45969.1| PPIC-type PPIASE domain protein [Prevotella disiens FB035-09AN]
          Length = 407

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 67/436 (15%), Positives = 144/436 (33%), Gaps = 60/436 (13%)

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE--IR 270
           +    +   D   + + + ++Y    V            E Q  Y++ +++       IR
Sbjct: 3   VQAALDAKLDTLTSFKQEFMTYRDQQVRPTMITDADIEAEAQKIYKETRDRIEGSGGLIR 62

Query: 271 TVEQLVFPNQKE-----------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----F 315
               L+   QK            AD  +  + KG  F +LA++  K  S  + G      
Sbjct: 63  CAHILLSAGQKASVAEQKEIADRADSLYNVIMKGGNFAELAKKYSKDPSSAARGGELPLI 122

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           ++      +  +++FS+ K G+ +  I   FGY I     +       +  +K DI   +
Sbjct: 123 TRGQTV-QAFEEALFSM-KPGEISHPILSPFGYHIIKY--VAKEQFQPYDSLKADIHQFI 178

Query: 376 RITKASEKVKE-DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
                 E++ +   +++      G +  ++        ++  L +   KD   K +    
Sbjct: 179 EARNLREQIIDQKLQKMATEAGNGVTPQQL--------VEKKLAEMEEKDPNLKNLVR-E 229

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES--IPARDRKLEEVLTDVKKDWKT 492
           Y + LL       +   K         +Y     K       R +        +    + 
Sbjct: 230 YHDGLLLIEMSSREVWDKASNDEAGLQAYFKKHKKHYAWKEPRFK-------GIAYHVQK 282

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF----GYDG 548
            +  + V     ++          F+D G+ L  +    + I R+  E   F        
Sbjct: 283 KEDVKAVKDCVAKI---------PFKDWGEKLRTTFNNDSTI-RIRVEKGLFKQGDNPLV 332

Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
             ++F     +          +Y +  V   K+   +E +   S +     + L    I 
Sbjct: 333 DKEIFKQNTTVKPV------ENYPIDAVYGKKLKAPEEMNDVRSQVISDYQESLEKEWIK 386

Query: 609 YLKSQYSVTVHDNLIQ 624
            L+ +Y+V+V+  ++ 
Sbjct: 387 ALRKKYTVSVNREVLN 402


>gi|322418770|ref|YP_004197993.1| Dcu family anaerobic c4-dicarboxylate antiporter [Geobacter sp.
           M18]
 gi|320125157|gb|ADW12717.1| anaerobic c4-dicarboxylate antiporter, Dcu family [Geobacter sp.
           M18]
          Length = 546

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
            +  +V  ++ EA +    LK G  F  +A +     +      LG  +K  +       
Sbjct: 273 RISHIVVRSETEAKQVLAQLKSGGSFSDVARQCSIDATAGTGGDLGWQAKGKML-PEFEK 331

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +   L K GD T VI   FGY +      +P+   
Sbjct: 332 ACAKLKKPGDLTEVIKSPFGYHVVKFDEKRPAQNK 366


>gi|289522411|ref|ZP_06439265.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504247|gb|EFD25411.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 388

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/404 (13%), Positives = 127/404 (31%), Gaps = 98/404 (24%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFI 57
           L+ +R  ++  +  + +  +   F  +G+     D+  +      V       +  S   
Sbjct: 3   LKALRTRTKVIMIAVAVAFVISIFAGYGIYSRRGDSSATTEKDKVVAKANGTNIMLSQID 62

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW- 116
              +Q +  +      + N  +++   L K +LD +V    LD+ +++  +E     +  
Sbjct: 63  MGVRQLMDQM-----GISNLPQSQYYILRKHVLDQIVLDMELDKEVKENKIEVTDDEINV 117

Query: 117 ---GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
                I++ P           + +   L+   I E++      + L++  ++        
Sbjct: 118 AMDRIISQFPT---------KEAYQDYLSAYNIKEEDLKKELRRQLAQQKLLQT------ 162

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
                                       V      +   + +++E   D+Y         
Sbjct: 163 ---------------------------AVKTDDTVTEEEMQEFYEARGDDY--------- 186

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
                                         +  PE   V   +F ++K A     +L  G
Sbjct: 187 ------------------------------FVRPEGLWVNFAIFSDEKTAQGVRDALASG 216

Query: 294 KKFIQLAEEQG-KSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIH-GSFGYV 349
           + +  +  + G K+L   S        +  +   + +  L   K+G+ +  I      + 
Sbjct: 217 QTWDDVMSQYGDKALHSTSYDKPLLLPMTTLEAQEELLPLKELKEGELSRPIQLDEEQFG 276

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           I  V   +    + + EVK++I   +   KA  + +E  + L +
Sbjct: 277 IYLVKGYQKQEKIPYDEVKENIKLALSQQKAQAQRQEYLQGLVD 320


>gi|253581345|ref|ZP_04858571.1| peptidylprolyl isomerase [Fusobacterium varium ATCC 27725]
 gi|251836709|gb|EES65243.1| peptidylprolyl isomerase [Fusobacterium varium ATCC 27725]
          Length = 584

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 124/312 (39%), Gaps = 57/312 (18%)

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
            ++    +P++A L ++FEK K  Y         +   D +    K++ S ++       
Sbjct: 318 ENIKNSLNPTDAQLKEYFEKNKLVYDT-------FPSADSYIAILKVDPSAED------- 363

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFS 316
                               +  A+E  ++L   K F ++A++      S +   LG FS
Sbjct: 364 ----------------KAAAKTRAEELLKTLT-PKNFAEVAKKNSDGPSSPNGGDLGWFS 406

Query: 317 KEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           K+ + +     ++F+  + G   P  +   FG  + ++ + K        E +   ++ +
Sbjct: 407 KKDMVEP-FQKAVFA-GEVGKIYPEPVETIFGQHLIYIEDRKD------DEERAKASHIL 458

Query: 376 RITKASEKV----KEDYKRLEEFLALGT-SMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
            + K SE      K + + ++E LA GT + + +S+  K    D+       K      +
Sbjct: 459 IVPKISEATLNTKKAEIETVKEKLANGTVNFETLSKENK----DVLQSTLFSKIDDAGYI 514

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARDRKLEEVLTDVKKD 489
             + Y E L   +F    P++   T  + D  Y++ +I E    A D    E+   VK+D
Sbjct: 515 PGLGYNESLTKLIFAA--PINSVQTALIEDKFYIFKKINEVKYKAAD--FNELKNRVKED 570

Query: 490 WKTVKTAEEVSS 501
           +   KT EE+  
Sbjct: 571 YLNSKTQEELKK 582



 Score = 70.8 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 91/623 (14%), Positives = 198/623 (31%), Gaps = 78/623 (12%)

Query: 4   IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS------STVVSVGRQKVPFSSFI 57
            IRK  +    K  + ++ +  ++ G    L S+ GS      +    +   K+      
Sbjct: 9   AIRKFRKQ--MKPIIWLVTILMVLGGGYATLSSIIGSMSNGHSNYAFKLNGNKISKFEVE 66

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            +    +   S+ +G  V+      +       D +V+     +  + + ++   G V  
Sbjct: 67  KTKVTMIDGYSRYLGDKVDRGLIDIL-----AFDEVVNKNLTLEMADKLKVKVSSGDVNA 121

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           +  +      + +  + D F   L  +G  +  +       L+    +     G+ P++ 
Sbjct: 122 QYDKI-----ESSIGNKDQFKRMLQVQGYTKNTFKKELKDNLTVEKTLAKIQEGINPTD- 175

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             ++  ++Y +N    YI  + + +  + +     L Q   K  + Y     K    +  
Sbjct: 176 --EEINKYYEDNL---YIRFSGKPLAEVKNEVITDLKQ--TKGIEEYILLLNKARKEMKL 228

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           +   +E K  +  +E++   +           RT+  L   N                  
Sbjct: 229 ENISEEYKAYVERNEMEE--DGFAISNVEMAKRTLNNLFITNGDREKA-----------R 275

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +L++E  K+   ++  +  +    D +L  D  F   KKG F  +   S     A +   
Sbjct: 276 ELSKEYYKAQIKLAKIAIERGITVDETLPLDYKFEEYKKGLFENI-KNSLNPTDAQLKEY 334

Query: 357 KPSFTVSFQE--VKKDIANQMRITKASEKVKEDYKRLEEFLA--LGTSMDEISRREKIVS 412
                + +            +++  ++E       R EE L      +  E++++     
Sbjct: 335 FEKNKLVYDTFPSADSYIAILKVDPSAEDKAAAKTRAEELLKTLTPKNFAEVAKKN---- 390

Query: 413 IDLPLVDFAGKDVKGKEV---AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
                         G ++   +     E     VF  +        V    G ++     
Sbjct: 391 ------SDGPSSPNGGDLGWFSKKDMVEPFQKAVFAGEVGKIYPEPVETIFGQHLIYI-- 442

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVS--SKAN-QLVLEYSKEGKNFRDIGKNLGA 526
                 DRK +E            K +E      KA  + V E    G    +       
Sbjct: 443 -----EDRKDDEERAKASHILIVPKISEATLNTKKAEIETVKEKLANGTVNFETLSKENK 497

Query: 527 SLLTTNQINRMDNENKFFG----YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
            +L +   +++D+     G          +F+ P+  V+   IE+   Y+  K+   K  
Sbjct: 498 DVLQSTLFSKIDDAGYIPGLGYNESLTKLIFAAPINSVQTALIEDKF-YIFKKINEVKYK 556

Query: 583 PVQEKDKFISYLTQMMNKDLLDS 605
                +     L   + +D L+S
Sbjct: 557 AADFNE-----LKNRVKEDYLNS 574



 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 21/149 (14%)

Query: 256 EYEKNKEKYFSPEIRTVEQLVF----------PNQKEADEAFQSLKKGK-KFIQLAEE-- 302
             E  K+     E      ++             + E +   + L  G   F  L++E  
Sbjct: 441 YIEDRKDD---EERAKASHILIVPKISEATLNTKKAEIETVKEKLANGTVNFETLSKENK 497

Query: 303 ---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
              Q    S I    +      + SL   IF+       T +I   F Y+   ++ +K  
Sbjct: 498 DVLQSTLFSKIDDAGYIPGLGYNESLTKLIFAAPINSVQTALIEDKF-YIFKKINEVK-Y 555

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDY 388
               F E+K  +      +K  E++K+  
Sbjct: 556 KAADFNELKNRVKEDYLNSKTQEELKKLI 584


>gi|149177450|ref|ZP_01856054.1| probable peptidyl-prolyl cis-trans isomerase [Planctomyces maris
           DSM 8797]
 gi|148843783|gb|EDL58142.1| probable peptidyl-prolyl cis-trans isomerase [Planctomyces maris
           DSM 8797]
          Length = 407

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 113/330 (34%), Gaps = 43/330 (13%)

Query: 112 HGRVWGEIARSPLF-HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
              V   +  +PLF       +   +     A + +  +EY     + L + D+      
Sbjct: 92  DSTVVAMVNGTPLFVSDIIGVYDFQLKQ---AEQRMPPEEY-QKLRRALVKRDLKSHIER 147

Query: 171 GMR---PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP----SNAVLTQ-------- 215
            +        L  +      E+        +   +P +       S   L +        
Sbjct: 148 QLLIHEMKTTLKKEQLAMLQEHLD---KAFDEERIPELQKAVGASSPQELEEKLNQQGRS 204

Query: 216 -WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
            ++E  K+ +   +    S + F   + + K + S +E+ A Y+ N ++Y  P     ++
Sbjct: 205 LYYE--KELFMKQQ----SALQFMAVKAKSKNDFSREEVLARYKSNLDEYAYPAKARWQR 258

Query: 275 LVFP-----NQKEA----DEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPD 322
           +         + +A    DE    L+ G+ F  LAE+      +      G   +  + D
Sbjct: 259 IRISYAKHGGKDKAVGVLDEVIHKLQAGENFGTLAEKYSDGPRAEKKGQWGWTGRGSLAD 318

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             +  ++F L   G  + V      + I  V + K +    F +V+  +   M      +
Sbjct: 319 SEVEAALFELP-VGQTSQVFETDDSFQIVKVIDRKEAGHTPFADVQAQLEQSMVNDARMK 377

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVS 412
             +E   +L +   + +  +  +  EK+ +
Sbjct: 378 ATRETLDQLFKKAIIESMFEYETEDEKVTN 407


>gi|120611614|ref|YP_971292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
 gi|120590078|gb|ABM33518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
          Length = 265

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            + +K   +++ ++QAEY+K        E +    ++   + +A     S+KKG KF  +
Sbjct: 109 ADYQKANPVTDADIQAEYDKFVAANTGKEYK-ASHILVETEDQAKSIIASIKKGAKFEDI 167

Query: 300 AEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++Q K     + G       P        +++  L K       +   FG+ +  + ++
Sbjct: 168 AKKQSKDPGSGARGGDLDWATPSSYVSEFTEALVKLDKGKMTQTPVKTQFGWHVIRLDDV 227

Query: 357 KPSFTVSFQEV 367
           + +      EV
Sbjct: 228 REAKLPKLDEV 238


>gi|20808476|ref|NP_623647.1| parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517095|gb|AAM25251.1| Parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 264

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 16/217 (7%)

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN--YRAPEYKRISYILF 237
           ++  +   EN       +           ++  L + ++  KD       + K I     
Sbjct: 56  EELTKTALENLKAKKA-VEYEAQKEGIAVTDEELNKAWQNIKDKTKLTKEDLKDILLSDK 114

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
             ++  K I ++ +E++  YE +K+ Y +     V ++   ++  AD  +Q LK G+ F 
Sbjct: 115 LFNKYTKDITVNPEEVEQFYETHKDYYTT---VKVYEISVRDKDTADMVYQKLKSGEDFS 171

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA-KKGDFTPVIHGSF-GYVIAHVSN 355
           +L E+        + G     ++ ++ ++   F ++ K       I  +  GY+I   + 
Sbjct: 172 KLFEQYSIDRISGNGG-----FMGEIPVSQKFFGVSLKPDTIYEPIPVNNEGYIILKTTE 226

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                   F EVK  I   +   K  +   +  K  E
Sbjct: 227 ---QIIKPFDEVKDGIELYLLNQKKLDFYHKKIKEWE 260


>gi|302346446|ref|YP_003814744.1| hypothetical protein HMPREF0659_A6700 [Prevotella melaninogenica
           ATCC 25845]
 gi|302150324|gb|ADK96585.1| conserved hypothetical protein [Prevotella melaninogenica ATCC
           25845]
          Length = 715

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 79/677 (11%), Positives = 197/677 (29%), Gaps = 115/677 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFINS 59
           L  IR  S+  +    + +    FL    + +   + G     +  +  +K+    +   
Sbjct: 4   LGKIR--SKGGILVGAIGLALFAFLAGDAARSCDGIKGEARQQIGEILGKKISVQDYQKL 61

Query: 60  WKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG- 117
             +    I        +  +  +   ++ ++   LVS   ++   E +GL      +   
Sbjct: 62  IDEYQSAIKFTMQRDNLTDQELKQ--VEDQVWQQLVSNRVIEADAEKVGLTVTEKEIQNV 119

Query: 118 -------EIARSPLFHGKDNKFSHDVFVSRLAREG------------INEKE-----YID 153
                   + ++P  + +  +F  +                      +            
Sbjct: 120 LNEGTNPMLVQTPFVNQQTGRFDVNALKQFFDSYNKAKAAKSPQVEQMQPIYDYWLFVEK 179

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAV 212
           +    L       +    +  +      A +   E   +    L    V  A    ++  
Sbjct: 180 NLRAQLLGQKYQALLASCVLSNKAEAKMAFKDNNEESQIQLASLAYSTVKDADVKVTDDD 239

Query: 213 LTQWFEKYKDNYRA-PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
           L   + + K  +R   E + I ++ F +                                
Sbjct: 240 LKAKYAELKPAFRQNVETRDIKFVDFQIKASAADRS------------------------ 275

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
                    KE ++  + L        +  + G  +  + L   +K Y     +A  I S
Sbjct: 276 ------QVVKEMNDFQKQLASAADPAAVVSKSGSEIPYLGLPVSNKAYQQYPDIASKIDS 329

Query: 332 LAKKGDFTPVIHGSFGYV-IAHVSNIKPSFTVSFQEVKKDIANQMRITKAS------EKV 384
           L+  G    V +     + I  V +            K  +A+ ++  + +      ++ 
Sbjct: 330 LS-VGTTGVVENAQDNTLNIIRVLS------------KAQLADSIQFRQINIAAATPDEA 376

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           +     +++ LA G   D +++R       +       +           +   LL    
Sbjct: 377 RAKADSIQKALAGGADFDALAKRYGQTGEKVWFTGQQYEMAPSMNQDNRTFINALL---- 432

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
             +  ++    +AL  G+ + +Q+ +      +    V+  V         ++   S A 
Sbjct: 433 --NGEVNATQNLALTQGNII-LQVLDKKAFTTKTTAAVIKKVVDF------SKATRSNAY 483

Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-----YDGISQVFSGPVEM 559
               E+  +     D+ KN   S      +N +     + G     +D +  +F      
Sbjct: 484 NKFSEFVAKSSTVADLEKNAPKSGYQVQSLNDISTAEHYVGGIPGTHDALKWLFEAKQGE 543

Query: 560 V-KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS-----VIAYLKSQ 613
           V   +   N    +V  +T     P   +    + + +++ ++++       ++A LK  
Sbjct: 544 VSPLYECGNNDHLLVIALTAVH--PQGYRSWDDAQVKEILKREVIKDKKAEKLMAKLKG- 600

Query: 614 YSVTVHDNLIQRYLDGE 630
               V+     +    +
Sbjct: 601 ----VNSIAAAQAKGAK 613



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 116/348 (33%), Gaps = 24/348 (6%)

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF-SLAKKG 336
             + +AD   ++L  G  F  LA+  G++   +       E  P ++  +  F +    G
Sbjct: 375 EARAKADSIQKALAGGADFDALAKRYGQTGEKVWFTGQQYEMAPSMNQDNRTFINALLNG 434

Query: 337 DFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +     + +   G +I  V + K   T +   V   I   +  +KA+      Y +  EF
Sbjct: 435 EVNATQNLALTQGNIILQVLDKKAFTTKTTAAV---IKKVVDFSKATR--SNAYNKFSEF 489

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           +A  +++ ++ +        +  ++          V  IP     L  +F          
Sbjct: 490 VAKSSTVADLEKNAPKSGYQVQSLNDISTAEHY--VGGIPGTHDALKWLFEAKQGEVSPL 547

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
                +   + + +    P   R  ++    VK+  K     +    KA +L+ +   +G
Sbjct: 548 YECGNNDHLLVIALTAVHPQGYRSWDD--AQVKEILKREVIKD---KKAEKLMAKL--KG 600

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC-----FPIENGL 569
            N     +  GA + + NQI              +    SG V           P++   
Sbjct: 601 VNSIAAAQAKGAKVSSVNQIT-FAAPAFVQATGSVEPALSGAVAGTAAGKFSKAPVKGNA 659

Query: 570 SYVVFKVT-NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
              VF+V   S     +  +  +       N  L+ + +  L  +  V
Sbjct: 660 GVYVFQVVKKSMRAGSKYDETLVMQQAAQANMQLVGNFMQDLILKAKV 707


>gi|167590259|ref|ZP_02382647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ubonensis Bu]
          Length = 452

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/410 (11%), Positives = 122/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V   ++ R+     ++L+ +V     
Sbjct: 40  DEVVAVVNNDVITGRELDQRVGLISRRLKQQNAPVPPLDQMRA-----QVLNQMVLERIQ 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D   V   + R      + N  + D + +R+  +G+    +       L
Sbjct: 95  VQKAKDDGIRIDDAAVQSTLQRL----AQANGMTLDQYRARIEAQGVPWSVFTGDARTEL 150

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDYIVL--------NNRHVPAI 205
             + +    V   +  S+  +             + + + +  +            + A 
Sbjct: 151 MLSKLREREVDSKITVSDAEVASYIASQRGPSASQQQDLRFQHIFVKAPTSAPQADIEAA 210

Query: 206 ADPSNAVLTQ---------WFEKYKDN----------YRAP-----EYKRISYILFDVHE 241
              ++A+L Q           +   +           +++P     +    +  L     
Sbjct: 211 QKKADALLKQAQSGADFERLAKNNSEADDAKKGGDLGFKSPGALPADVVAAASQLRPGQV 270

Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQKEADE---------A 286
               I + +  E+    ++ + +  S          V  ++    +   E          
Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDI 330

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 331 RKQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQVSIPVR 388

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + S   S Q+        +   KA +   +  + L +
Sbjct: 389 TEYGYHLIQVLERRESEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437


>gi|295425340|ref|ZP_06818043.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus amylolyticus DSM
           11664]
 gi|295065116|gb|EFG56021.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus amylolyticus DSM
           11664]
          Length = 302

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 85/239 (35%), Gaps = 28/239 (11%)

Query: 165 VGMFVGGMRPSNLLLDQAKRFYF-ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           V  + GG        D+ K+    ++   + I+    +    +  S++ + + +  YK  
Sbjct: 32  VASYKGGKITQQQYYDEMKKSQSGQSTLANMIIYRALNEQYGSKVSSSEVNKQYNNYKKQ 91

Query: 224 Y------------RAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           Y              P   +  +   L      +   +++  + +  ++  + K      
Sbjct: 92  YGSQFSAVLQQNGMTPSSFKQNLKTNLLSEAALKDIKKVTKAQEKKAWKTYQPK------ 145

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-----GSFSKEYIPDVS 324
            TV+ ++   +  A +  + LK GK F  LA++     +  +         S +   D S
Sbjct: 146 VTVQHILVSKKSTAQKIIKELKAGKSFASLAKKYSLDTATKNNAGKLPAFDSTDTTLDPS 205

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              + F L      +  +    GY +  +  IK     +F E KK I N +  + A ++
Sbjct: 206 FKTAAFKLKTGEVTSTPVKSQSGYHVIKM--IKHPSKGTFAEHKKTIDNLIYASMAQDQ 262



 Score = 44.6 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 48/171 (28%), Gaps = 33/171 (19%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           S   SSTV S    K+    +                     +  +     +  L N++ 
Sbjct: 25  SNGSSSTVASYKGGKITQQQYY--------------------DEMKKSQSGQSTLANMII 64

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L++     G +     V     +   +  +        F + L + G+    +  + 
Sbjct: 65  YRALNEQ---YGSKVSSSEVNK---QYNNYKKQYGS----QFSAVLQQNGMTPSSFKQNL 114

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
              L             + +     +A + Y    +V +I+++ +      
Sbjct: 115 KTNLLSE---AALKDIKKVTKAQEKKAWKTYQPKVTVQHILVSKKSTAQKI 162


>gi|94985701|ref|YP_605065.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           geothermalis DSM 11300]
 gi|94555982|gb|ABF45896.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           geothermalis DSM 11300]
          Length = 635

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/373 (12%), Positives = 105/373 (28%), Gaps = 97/373 (26%)

Query: 30  LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
           +          +  + V  Q V       + ++    ++      +  +      L   +
Sbjct: 25  VGALFGRRQAGTPALKVNGQTVTAEELE-AIRRSFPALAGFESGPLADD------LKTYV 77

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
           +        L Q  +D  ++     V  E+ +       +N   +  +   L   G+ + 
Sbjct: 78  VAQKARQVLLIQAAKD--IKVSRADVNAEVQKV---RQANNLTDNKAWTDALQSAGLTDA 132

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
            +       L+             P+                                 +
Sbjct: 133 TFRQQVRDQLAVQRKSEEIQQAAPPA---------------------------------T 159

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           +A    ++E + +++++                                           
Sbjct: 160 DAEARLYYELHPESFQS----------------------------------------DAR 179

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLA-------EEQGKSLSDISLG---SFSKEY 319
               ++V  ++ +A+   + ++ G  F QLA        E+G +L  +  G     ++  
Sbjct: 180 IVGREIVVNDKAKAEALLKQVRGGADFAQLARQNSSEFAERGGALGPLENGRPRPVARVA 239

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           +PD  +A + F+L   G  T VI     + I  V    P  T  F + K D    +   K
Sbjct: 240 LPD-EVAAAAFALT-GGGVTDVIASGGKFYIVKVEQYLPPQTKPFADAKADAVTAVNRQK 297

Query: 380 ASEKVKEDYKRLE 392
               V++    LE
Sbjct: 298 KDAAVEQWLTNLE 310



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               + +++++ ++Q  Y +N +++ +P   TV +  F ++ +A    QS      F   
Sbjct: 409 AYGARNVQVTDADIQKFYLQNPQQFETPASATVSEASFADRDKALAFRQSWNGQGDFTAA 468

Query: 300 AEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAK-----KGDFTPVIHGSFGYVIA 351
           A + G ++S+   +   +          +  ++F+        +G  + V+     YV+A
Sbjct: 469 ATKAGATVSERGEVRPSTPETPGTLAQPVEAAVFTAKTLRPAGEGSLSDVVKVGNRYVVA 528

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE-ISRREKI 410
           +V++++ +       V+  I  Q+   K  E  +    +    L    ++ + ++ ++K 
Sbjct: 529 YVTDLQRASVQPLAAVRDQIRQQLLTQKREEAGQAYLAQQVAALKPVNNLQKVLADQQKR 588

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           V+ + P         +G   +             G   P S + T
Sbjct: 589 VAAEAPKTPATEGGAEGSAGSNTDTNGSAGQGATGSSAPKSSEGT 633



 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 35/149 (23%), Gaps = 3/149 (2%)

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
               +     A P +  +      +         V      Y+   + +   A  + L  
Sbjct: 484 PSTPETPGTLAQPVEAAVFTAKTLRPAGEGSLSDVVKVGNRYVVAYVTDLQRASVQPLAA 543

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEY---SKEGKNFRDIGKNLGASLLTTNQINRMD 538
           V   +++   T K  E   +   Q V      +   K   D  K + A    T       
Sbjct: 544 VRDQIRQQLLTQKREEAGQAYLAQQVAALKPVNNLQKVLADQQKRVAAEAPKTPATEGGA 603

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIEN 567
             +     D       G          E 
Sbjct: 604 EGSAGSNTDTNGSAGQGATGSSAPKSSEG 632


>gi|283783842|ref|YP_003363707.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase)
           [Citrobacter rodentium ICC168]
 gi|282947296|emb|CBG86841.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase)
           [Citrobacter rodentium ICC168]
          Length = 428

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/369 (13%), Positives = 109/369 (29%), Gaps = 57/369 (15%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       + N  
Sbjct: 54  SQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDEQLDQAIANI----ARQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191
           + D   SRLA +G+N   Y +   K +  ++V        +      ++   +       
Sbjct: 110 TLDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRVTILPQEVEALAQQVGNQND 169

Query: 192 VDY------IVLNNRHVPAIADPSNAVLTQW------------------FEKYKDNY--- 224
                    I++     P     S A                       +   +      
Sbjct: 170 ASTELNLSHILIPLPENPTSDQVSEAEAQARSIVDQARSGSDFGKLAIAYSADQQALKGG 229

Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQ 274
                R  E   I        +K   +      +     K  +     +           
Sbjct: 230 QMGWGRIQELPGIFAQALSTAKKGDVVGPIRSGVGFHILKVNDMRGQNQSISVTEVHARH 289

Query: 275 LVFP---------NQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGS---FSKEYIP 321
           ++            +++ ++    +K GK  F   A+E  +     + G    ++   I 
Sbjct: 290 ILLKPSPIMTDQQARQKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAAADIF 349

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           D +  D++  +  KG  +  +H SFG+ +  + + + S   +    K      +   K S
Sbjct: 350 DPAFRDALTRM-NKGQISAPVHSSFGWHLIELLDTR-SVDKTDAAQKDRAYRMLMNRKFS 407

Query: 382 EKVKEDYKR 390
           E+     + 
Sbjct: 408 EEAATWMQE 416


>gi|16127297|ref|NP_421861.1| peptidyl-prolyl cis-trans isomerase family protein [Caulobacter
           crescentus CB15]
 gi|13424717|gb|AAK25029.1| peptidyl-prolyl cis-trans isomerase family protein [Caulobacter
           crescentus CB15]
          Length = 314

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 69/177 (38%), Gaps = 6/177 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++ D ++  Y + ++     E     Q++  +Q EA+   + L  G  F  LA E+   
Sbjct: 121 AVTEDAIRKLYAEQQKLSKRSEEIRARQILVGSQAEAESIKKLLATGASFDALAMERSTD 180

Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                +   LG F+ + +P+     +    A+KG          G+V+  V + +    +
Sbjct: 181 QATRFNGGDLGYFTLDVMPEAYG--AALKDAQKGALIGPFAAEGGWVLVKVEDKRTEEPI 238

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
           + +  +  I   +   +  + +++     +  + +G S +  +   +  +   P + 
Sbjct: 239 TLEAARPQIIRFLTYDQVRDILEKLRGSAKVEMMIGKSQELPAGSAQEPASAPPELQ 295


>gi|240142444|ref|YP_002966954.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Methylobacterium extorquens AM1]
 gi|240012388|gb|ACS43613.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Methylobacterium extorquens AM1]
          Length = 266

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 75/224 (33%), Gaps = 23/224 (10%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL-NNRHVPAIADPSNAVLTQ 215
           + +    +    V   +    + +  +  +   + VD  +L +   +  ++ P+      
Sbjct: 33  RAVQTAQLREAAVRFAQRLAGVPEVRRAGFIAGQVVDVAILSDAARLEGVSPPTVDADRD 92

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +             +        +++  K+      ++++ Y+                +
Sbjct: 93  Y------------GRDSQAAQAMLNKIVKESAPEESDVRSAYDAQVPGL----EYRARHI 136

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFS 331
           +   +++A  A   +  G++F  +A           +   LG F ++ +       ++ +
Sbjct: 137 LVATEEQALAARGRIVAGERFEDVARSVSSDRSTVPAGGDLGWFLRDRMV-PEFGTAVAA 195

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           L+  G  +  +   FG+ +  +   +P     ++   + +  Q+
Sbjct: 196 LS-PGALSEPVRSQFGWHLIRLDETRPQTIPPYENDAQRVRAQL 238


>gi|167950935|ref|ZP_02538009.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Endoriftia
          persephone 'Hot96_1+Hot96_2']
          Length = 79

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 1  MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
          ML+ IR  ++ W+A   ++++ +PF +WG+ + L        V SV  +++        +
Sbjct: 1  MLQAIRDKAQGWIAWAIVILISIPFALWGIQEYL-GAGAEPVVASVNDEEITERDLDQRF 59

Query: 61 KQELGMISQKIGFVV 75
                + +++G   
Sbjct: 60 NTFRQQLRERLGAAY 74


>gi|332140206|ref|YP_004425944.1| survival protein surA [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550228|gb|AEA96946.1| survival protein surA [Alteromonas macleodii str. 'Deep ecotype']
          Length = 427

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/366 (11%), Positives = 111/366 (30%), Gaps = 57/366 (15%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
             V  +  Q V   S I++  QE+   +      + S+RA    L  + ++ L++ +   
Sbjct: 26  DRVAVIVDQGVVLESEIDALVQEVKRNAAANDQQLPSDRA----LRTQAIERLITKSLQL 81

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q  E +G+     ++   I               +   ++LA EGI   +Y +   + + 
Sbjct: 82  QMAERMGIRISDPQLEQTIGNIASNQNAT----VEQLRAQLAAEGIAYDDYREDIREEII 137

Query: 161 R-TDVVGMFVGGMRPSNLLLDQAKRFYFEN-RSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
                       +  +   ++       +         L +  +    +P++  +    E
Sbjct: 138 MGEVRRANVRRRVYITPQEIETLVDLMEQQGAQQAEYRLGHILIGFPPEPTDEDIQAARE 197

Query: 219 ---------KYKDNY-----------RAPEYKRISYILFDVHEKEKKIEISNDE------ 252
                    +   ++            A E   + ++  +         I N +      
Sbjct: 198 RADKVIALLESGSDFAKIAIASSSGNEALEGGDMGWLNINAMPTLFAEAIQNKDKDALVG 257

Query: 253 ---------LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAF----QSLKKGK 294
                    +    +    +  + E      ++       ++ +A        + LK G+
Sbjct: 258 PIRSGAGFHILKVLDTRGIEKVTVEEVNSRHILVKPSIILSEDKAKAMLTRFKEELKNGE 317

Query: 295 K-FIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTPVIHGSFGYVIA 351
             F  LA+E  +       G       P   + +     S  + G+++  +    G+ + 
Sbjct: 318 AEFADLAKEHSEDPGSALRGGELGWSDPGNYVPEFKEALSQLEPGEYSDPVRTVHGWHLI 377

Query: 352 HVSNIK 357
            + + +
Sbjct: 378 QLIDRR 383



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 84/238 (35%), Gaps = 20/238 (8%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277
           D+YR    + I           +++ I+  E++   +  +++        +  ++     
Sbjct: 126 DDYREDIREEIIMGEVRRANVRRRVYITPQEIETLVDLMEQQGAQQAEYRLGHILIGFPP 185

Query: 278 --------PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLA 326
                     ++ AD+    L+ G  F ++A        +L    +G  +   +P    A
Sbjct: 186 EPTDEDIQAARERADKVIALLESGSDFAKIAIASSSGNEALEGGDMGWLNINAMP-TLFA 244

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVK 385
           ++I +   K      I    G+ I  V + +    V+ +EV    I  +  I  + +K K
Sbjct: 245 EAIQN-KDKDALVGPIRSGAGFHILKVLDTRGIEKVTVEEVNSRHILVKPSIILSEDKAK 303

Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
               R +E L  G    E +   K  S D       G+         +P  ++ L ++
Sbjct: 304 AMLTRFKEELKNGE--AEFADLAKEHSEDPGSALRGGELGWSDPGNYVPEFKEALSQL 359


>gi|330863030|emb|CBX73162.1| chaperone surA [Yersinia enterocolitica W22703]
          Length = 424

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 59/404 (14%), Positives = 125/404 (30%), Gaps = 66/404 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S      +  + + +Q+ G  V         L  +IL+ L+     
Sbjct: 16  DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQQVP----DDATLRHQILERLIMDNIQ 70

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+      +   IA         N+ +     SRLA +G+N   Y +   K +
Sbjct: 71  LQMAKKMGITISDEALDKAIADIAA----QNRMTPAQMRSRLAADGLNYDTYREQIRKEM 126

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217
             ++V        +      ++   +      S D  + L++  +P   +PS   + Q  
Sbjct: 127 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 185

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268
           E       +       +    +        +           EL + + +  +     + 
Sbjct: 186 EDLAKKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSASKGDV 245

Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291
                                             ++            + +   A   +K
Sbjct: 246 VGPIRSGVGFHILKVNDIRGTDKTISVTEVHARHILLKPSPVMTDDQARAKLTAAAADIK 305

Query: 292 KGK-KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            GK  F  +A+E     G ++    LG  S + I D +  D++  L +KG+ +  +H SF
Sbjct: 306 SGKANFATIAKEISQDPGSAMQGGDLGWASPD-IYDPAFRDALMKL-QKGEISAPVHSSF 363

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+ +  V + +     +    K      +   K +E+ +   + 
Sbjct: 364 GWHLIQVVDTR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 406


>gi|119775949|ref|YP_928689.1| survival protein surA [Shewanella amazonensis SB2B]
 gi|119768449|gb|ABM01020.1| survival protein surA [Shewanella amazonensis SB2B]
          Length = 434

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/399 (12%), Positives = 120/399 (30%), Gaps = 65/399 (16%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K+    L +     G              V V    V  S   N             G  
Sbjct: 6   KLIFAALAMTM---GFQSLAAPQPLDRVAVQVNDGIVLESEIQNMMDTVKKNALA-AGQT 61

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           + S+ A    L  ++++ L+      Q  E +GL     ++   I           K + 
Sbjct: 62  LPSDDA----LRTQVIERLILTRLQLQMAERVGLHIGDLQLDQAIENIAREQ----KMTV 113

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN--RS 191
                 +  EG++  +Y +   + ++  ++        ++ S   ++   +   E   + 
Sbjct: 114 AQMQQAIQAEGMSFAQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKMIEEQGNKD 173

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYK---------DNYR-----------APEYKR 231
           V+Y  + +  +   ++P++A L    ++ +         +++R           A E   
Sbjct: 174 VEY-QIGHILIEVPSNPTSAELESASKRAQAVMDRLNSGNDFRSIAIAASSGPKALEGGV 232

Query: 232 ISYILFDVHEKEKKIEISNDELQAEY---------------EKNKEKYFSPEIRTVEQLV 276
             Y+  +         I + +  A                 +    +    E      ++
Sbjct: 233 WDYMNINEMPTLFAEVIGDAKKDAIIGPIKSGSGFHILKIMDIRGLQTREIEEVRARHIL 292

Query: 277 FP-----NQKEADEAFQ----SLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDV 323
                  +++ A          +K G+ KF  +A +  +     + G    +++  I   
Sbjct: 293 LKPSPILSEERAKAMLDQFVTQIKSGEAKFADIARQYSEDPGSATKGGELGWAEPNIYVP 352

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
             A  +  L+   + +     + G+ I  +   + +   
Sbjct: 353 EFAQMLGQLSLD-EISAPFRTAHGWHIVQLEEKRKTDAT 390



 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 99/306 (32%), Gaps = 37/306 (12%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             +L+R  +      G+   +L LDQA       + +         V  +     A    
Sbjct: 75  RLILTRLQLQMAERVGLHIGDLQLDQAIENIAREQKMT--------VAQMQQAIQAEGMS 126

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +       YR    + I+       + +++I++S  E+    +  +E+        +  +
Sbjct: 127 F-----AQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKMIEEQGNKDVEYQIGHI 181

Query: 276 VFPNQ------------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322
           +                K A      L  G  F  +A         +  G +    I + 
Sbjct: 182 LIEVPSNPTSAELESASKRAQAVMDRLNSGNDFRSIAIAASSGPKALEGGVWDYMNINEM 241

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRI 377
            +L   +   AKK      I    G+ I  + +I+   T   +EV+        +  +  
Sbjct: 242 PTLFAEVIGDAKKDAIIGPIKSGSGFHILKIMDIRGLQTREIEEVRARHILLKPSPILSE 301

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
            +A   + +   +++   +      +I+R+    S D       G+    +    +P   
Sbjct: 302 ERAKAMLDQFVTQIK---SGEAKFADIARQY---SEDPGSATKGGELGWAEPNIYVPEFA 355

Query: 438 QLLFRV 443
           Q+L ++
Sbjct: 356 QMLGQL 361


>gi|332284989|ref|YP_004416900.1| putative peptidyl-prolyl cis-trans isomerase [Pusillimonas sp.
           T7-7]
 gi|330428942|gb|AEC20276.1| putative peptidyl-prolyl cis-trans isomerase [Pusillimonas sp.
           T7-7]
          Length = 258

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 4/148 (2%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFI 297
           + +  KK  +++ ++QAEY+K K+     +   V  ++  +QK A++   ++K  K  F 
Sbjct: 99  MADHLKKNPVTDAKIQAEYDKIKKLQADKQEYKVRHILVKDQKAAEDLTAAIKSKKVTFE 158

Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
             A++          G    ++         AD++  L K       +   FG+ I  V 
Sbjct: 159 AAAKKDSIDPGSGKNGGDLGWAPSTNYVPEFADAVEKLKKGQMTDKPVQSQFGWHIIQVD 218

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE 382
           + +        EVK  I   +R  + +E
Sbjct: 219 DTRDVKFPELAEVKPQIEEMLRQQQLAE 246


>gi|84514873|ref|ZP_01002236.1| PPIC-type PPIASE domain protein [Loktanella vestfoldensis SKA53]
 gi|84511032|gb|EAQ07486.1| PPIC-type PPIASE domain protein [Loktanella vestfoldensis SKA53]
          Length = 270

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 5/149 (3%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           +  I+ + LQ  Y+                L+   + EA+ A   L  G+ F  +A    
Sbjct: 101 QTSINQELLQEAYQDRFADAPETPEFRAAHLLVATEDEANAAKAQLDAGEAFADVAAAVS 160

Query: 305 KS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                 +   LG F    + +     ++ +L +  + +      FG+ I  +++ +    
Sbjct: 161 TDVTSANGGDLGWFGAGAMVE-EFETAVMAL-EIDEISDPFETQFGWHIVTLTDQRARPA 218

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390
            +F++V + ++ +++       + E    
Sbjct: 219 PTFEQVVQQLSAELQEAAVIAYLDELSAA 247


>gi|15806083|ref|NP_294787.1| peptidyl-prolyl cis-trans isomerase C [Deinococcus radiodurans R1]
 gi|6458794|gb|AAF10636.1|AE001957_4 peptidyl-prolyl cis-trans isomerase C [Deinococcus radiodurans R1]
          Length = 344

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 100/360 (27%), Gaps = 87/360 (24%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSG 96
           S  + V  VG Q +  + F  S++  +  +    G  ++ +          + L   V  
Sbjct: 51  SPDAVVARVGNQTLTLADFDRSFRVAVAGVVNAQGLPLSDDLLAEFASSRPEYLKQFVRE 110

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             L Q      ++ D   +  ++A       +    S   F   L + G       D   
Sbjct: 111 QALTQLA-RASVKPDAAAIDAQLA-----QARAGFGSDADFQQALTQTGYGSA---DDLR 161

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L R  V+  ++  +               + R                   +A++  +
Sbjct: 162 AGLERQAVIAPYLQSV---------------QKR---------------FTFGDAIVNGY 191

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +  ++D +                                               V+ ++
Sbjct: 192 YNLHRDAFTR----------------------------------------DAEACVKHIL 211

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
              + EA      L  GK F  +A+    + G +     LG  +       +   + FS 
Sbjct: 212 VATEAEAKTIVTDLSAGKDFAAVAKAKSQDPGSAAEGGDLGCIAPGDTV-AAFDKASFSG 270

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                   V+   +G+ +  VS    +  +   E    I  Q+    A + +     R++
Sbjct: 271 PLNQP--QVVQTEYGWHVLTVSRRSAAGLLPLTEAAPLIREQLSREAAQKYLDAQIARIK 328


>gi|294671290|ref|ZP_06736142.1| hypothetical protein NEIELOOT_02999 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307017|gb|EFE48260.1| hypothetical protein NEIELOOT_02999 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 320

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 120/383 (31%), Gaps = 80/383 (20%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           KI    L   F     +  + +V G + V   G   +    F  +  Q   + + +    
Sbjct: 5   KILTAALLACFFQTASAADIKTVDGVAAVA--GDSVITMRQFEQAVAQARRLPAAQRPP- 61

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
                     L +++L  L++ + + Q  +  GL A    V   +A +        K S 
Sbjct: 62  -------ENELRQQVLAQLINQSLIVQAGKRRGLAATQAEVDEAVAHAAAEQ----KISV 110

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVD 193
           D   +R A++G+++          L    V     +   R S   +D A     +     
Sbjct: 111 DQLYARAAKDGLSKAALRRQTADALVAQKVQQQAILQNARVSEAEVDAALARAQQQ---- 166

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
                      +A P                +AP   R  +IL                 
Sbjct: 167 ----------GVAIP--------------EGKAPRQYRAQHILIKAE------------- 189

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDI 310
                  KE   +     + ++    +K           G+ F +LA +    G +    
Sbjct: 190 -------KENAVAAAETVINKIRAQAEK-----------GRDFGELARQYSQDGSAPQGG 231

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG F    +       ++  L KKG  +  +   FG+ +  +++++   T   +  +  
Sbjct: 232 DLGWFGDGMMV-PEFESAVQKL-KKGQVSRPVRTQFGWHLIKLNDVREVGTPE-ERRRNT 288

Query: 371 IANQMRITKASEKVKEDYKRLEE 393
           I   +   KA +   +  ++L E
Sbjct: 289 IRQYIMQQKAEQAAGQLLQQLHE 311


>gi|262198047|ref|YP_003269256.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
           DSM 14365]
 gi|262081394|gb|ACY17363.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
           DSM 14365]
          Length = 349

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/361 (10%), Positives = 99/361 (27%), Gaps = 73/361 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    +  S            ++        + R     L  + LD ++S   +
Sbjct: 53  DRVAAVVNDSVILTSELDARLAPLTAGLANINDERERARRGEQ--LRSQQLDEMISEELV 110

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q      L  D   V   +A                      + G+++ +      +  
Sbjct: 111 VQEARKSKLNVDDKEVSAALAEIK------------------QQNGLDDTQLAAALAQQG 152

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                                + +R     R+++ +V            ++  +   ++ 
Sbjct: 153 YSMQ-------------AYRKEVERQLLHRRAINMLVRP------RVTVTDEDVRVRYDT 193

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                 A    R+ + L  +                                  +L+   
Sbjct: 194 MSRRSAAVSKVRLKHALLSLPPNPSN----------------------------ELLAEA 225

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKK 335
           + +A    ++++ G  F   A +    +    S   LG   +  I        +FS+ ++
Sbjct: 226 KSKAAAIVEAVRGGASFDDQARQYSDDINTRDSGGDLGWIERGSIA-TEWEVIVFSM-EE 283

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G+    + G  G  + +V  +  S    F  VK+ + +++   +  +++    + L +  
Sbjct: 284 GEVRGPVSGPGGLHVFYVEELAKSDLEEFDAVKEQLQSEIYREEMDKEITAWLQELRDKA 343

Query: 396 A 396
            
Sbjct: 344 F 344


>gi|197286178|ref|YP_002152050.1| peptidyl-prolyl cis-trans isomerase SurA [Proteus mirabilis HI4320]
 gi|194683665|emb|CAR44613.1| chaperone SurA protein (peptidyl-prolyl cis-trans isomerase)
           [Proteus mirabilis HI4320]
          Length = 436

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/382 (13%), Positives = 115/382 (30%), Gaps = 59/382 (15%)

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
             +    Q        E      L ++IL+ LV    + Q  + + ++     V   I  
Sbjct: 47  NRMLQTVQMNAKNAGQEMPDEQVLRQQILERLVMDNIILQMAQQMQIDIPEAAVESTIQG 106

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLD 180
                  +N  + +    RLA +GI   +Y     K +   +V        +      +D
Sbjct: 107 IAA----ENNLTLEQLKKRLAADGIAYNDYRQDIRKEMMLAEVRNNEVRRRITILPQEVD 162

Query: 181 QAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
              +      S    + L++  +P   +PS A + +  ++  +  +        +     
Sbjct: 163 SLAKQIESQASQSIDLNLSHILIPLSENPSPAEIEK-AQQVVNRIKNQLKNGADFGKLAA 221

Query: 240 HEKEKKIEI--------SNDELQAEYEKNKEKYFSPE----------------------- 268
                   +        S DEL   + K        E                       
Sbjct: 222 TYSADPQALNGGNMGWASIDELPTIFAKQLANAQKGEIVGPLQSGVGLHIIKVNDIRGAS 281

Query: 269 ------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISL 312
                       ++       N ++A     +    ++ GK  F   A+E  +       
Sbjct: 282 KTVSVTEVKARHILLKSSPIMNDEQAYAKLQKISADIRSGKISFADAAKEYSEDPGSALR 341

Query: 313 GSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
           G      +P   D +  D++  L K  + +  +  +FG+ +  + + + S   +    K+
Sbjct: 342 GGELGWSMPDIYDPAFRDALMRLNKN-ELSQPVRSNFGWHLIELEDTR-SVDKTDAANKE 399

Query: 370 DIANQMRITKASEKVKEDYKRL 391
                +   K +E+V+   + L
Sbjct: 400 QAYRLLFNRKFNEEVQNWMQEL 421



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 98/282 (34%), Gaps = 23/282 (8%)

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY----IVLNNRHVPAI 205
           + +    K   +       +       L++D       +   +D     +    + + A 
Sbjct: 51  QTVQMNAKNAGQEMPDEQVLRQQILERLVMDNIILQMAQQMQIDIPEAAVESTIQGIAAE 110

Query: 206 ADPSNAVLTQWFEKY---KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
            + +   L +         ++YR    K +       +E  ++I I   E+ +  ++ + 
Sbjct: 111 NNLTLEQLKKRLAADGIAYNDYRQDIRKEMMLAEVRNNEVRRRITILPQEVDSLAKQIES 170

Query: 263 KYFSPEIRTVEQLVFP-----NQKEADEAFQ-------SLKKGKKFIQLAEEQGKSLSDI 310
           +        +  ++ P     +  E ++A Q        LK G  F +LA         +
Sbjct: 171 QASQSIDLNLSHILIPLSENPSPAEIEKAQQVVNRIKNQLKNGADFGKLAATYSADPQAL 230

Query: 311 SLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVK 368
           + G+     I +  ++     + A+KG+    +    G  I  V++I+  S TVS  EVK
Sbjct: 231 NGGNMGWASIDELPTIFAKQLANAQKGEIVGPLQSGVGLHIIKVNDIRGASKTVSVTEVK 290

Query: 369 KD-IANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRRE 408
              I  +       E+     +++  +  +   S  + ++  
Sbjct: 291 ARHILLKSSPIMNDEQAYAKLQKISADIRSGKISFADAAKEY 332


>gi|146339244|ref|YP_001204292.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
 gi|146192050|emb|CAL76055.1| putative Peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
          Length = 308

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 66/181 (36%), Gaps = 20/181 (11%)

Query: 247 EISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKE------------ADEAFQSLKKG 293
            +S + ++  YE    K  S +    +  LVF  +              A  A + LKKG
Sbjct: 129 AVSEETVRKAYEDVVLKAASEQTEVHLRHLVFLTKDAPDDAARKAIEARAQAALERLKKG 188

Query: 294 KKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F  +A E              G   +  +     AD+ F + K GD +P+I    G  
Sbjct: 189 EDFAAVATETSDDPVTKSRGGDFGWRIRPELSK-EYADAAFEM-KNGDISPLIKTGVGLH 246

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRRE 408
           I  + + +      F  V++ +A  +  T   E V +     + E    G S+   ++  
Sbjct: 247 IIKLEDRRTRRPPEFDTVRERVAAMVSATAQIELVDKARAAAKIERFDGGASIAPTAQPS 306

Query: 409 K 409
           K
Sbjct: 307 K 307


>gi|163753204|ref|ZP_02160328.1| peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1]
 gi|161326936|gb|EDP98261.1| peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1]
          Length = 701

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 87/638 (13%), Positives = 201/638 (31%), Gaps = 91/638 (14%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS----TVVSVGRQKVPFSSFI 57
           L  IR+  RT V  + + +    F+   +SD   +  G       + +V  + +P   F 
Sbjct: 4   LAKIRQ--RTLVLILIIGLALFAFV---ISDVFNNNGGGDKRPTEMGTVNGENIPLQQFQ 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           N  +             ++  R  ++ +   + D  V  A + Q ++++G+  +   +W 
Sbjct: 59  NQVE---------YAKNLSRGRQTTMQIVNSLWDEEVKNALITQQLDELGITIEKDEIWN 109

Query: 118 E------IARSPLFHGKDNKFSHDVFVSRLARE-------GINEKEY------IDHYTKM 158
                  I  SP F  +   F        +            ++ EY        +  + 
Sbjct: 110 LLITSPNITSSPQFQDESGTFVEGKLREYVNNLEAKRNLDDQSKAEYNNWVATEQYTIRE 169

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWF 217
             +     +   G   +    + A R   +  +  Y+ +    +   + +   + +  + 
Sbjct: 170 AKKALYYNLVKAGSIATVKEGEMAYRMENDKVTFKYVQIPYTSIADSLVEVRKSDVQNYI 229

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E +K  +   E + I Y+ F     +                                  
Sbjct: 230 ENHKSEFEVKESRDIQYVFFPETPSK---------------------------------- 255

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS-FSKEYIPDVSLADSIFSLAKKG 336
            +++EA +  +  KKG    + A       ++ +  + F+        ++  I ++ + G
Sbjct: 256 SDEEEAKQMVEDYKKGLAAAEDANAYANEYTETNESTAFTYSSQLPADISSEIMAM-EVG 314

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           D          Y I+ +             VK      +R   ++    +  +  EE   
Sbjct: 315 DVYGPYKVGNQYKISRLVETSKLP----DSVKSR-HILIRFAGSAGAQPDLKRTKEEAKK 369

Query: 397 LGTSMDEISRREKIVSIDL-PLVDFAGKDVKGKEVAAIPYKEQL--LFRVFGKDDPLSKD 453
              S+  I +R K    D+   +       KG ++        L   F+ F  ++     
Sbjct: 370 TADSILTIVKRNKSKFADIAKEISDDTSKDKGGDLGWFTGATALTPTFKEFVFENETGDM 429

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
             V  P G ++     +    +  KL  +   V+    T +T  ++ + +++   +  K 
Sbjct: 430 GVVESPFGFHVIEIEDQKNEQKVVKLATINKQVE---VTEQTLNDLFTTSSKFESDAGKS 486

Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSY 571
              F ++ K     +   N+I  +D          + I   F    E+        G  +
Sbjct: 487 DDAFVNVAKERNYDVNPVNRIKELDASLAGMPQQREVIRWTFEEDTEVGDIRRFSVGSGF 546

Query: 572 VVFKVTNSKVG----PVQEKDKFISYLTQMMNKDLLDS 605
           +V +VT           +   + +  L      +++ +
Sbjct: 547 IVVQVTAKHAAGLASVEEASARVLGTLRNKKKAEMIKA 584



 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 74/235 (31%), Gaps = 30/235 (12%)

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF--SLAKKGDFTPVIHGSFG- 347
           K    F+ +A+E+   ++ ++        +  +     +   +  +  +   +   S G 
Sbjct: 485 KSDDAFVNVAKERNYDVNPVNRIKELDASLAGMPQQREVIRWTFEEDTEVGDIRRFSVGS 544

Query: 348 -YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
            +++  V+    +   S +E    +   +R  K +E +K +        A   ++ E++ 
Sbjct: 545 GFIVVQVTAKHAAGLASVEEASARVLGTLRNKKKAEMIKANN-------AGSKTLAELAS 597

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
                             +    +     +++++   F  D   +              +
Sbjct: 598 AAGKA-----EQQATSLSMAAPIIPGAGAEKKVVGAAFALDKGATSGLIE--GRTGVFMI 650

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVK--TAEEVSSKANQLVLEYSKEGKNFRD 519
           Q+           ++V    K  + T       + ++KA   V+E  K      D
Sbjct: 651 QVV----------DKVEAPAKDTYLTEMNTLRNQRATKATSSVVEALKSSSEIED 695



 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 13/141 (9%)

Query: 259 KNKEKYFSPEIRTVEQL-VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
           K+     S E  +   L    N+K+A+    +    K   +LA   GK+    +  S + 
Sbjct: 554 KHAAGLASVEEASARVLGTLRNKKKAEMIKANNAGSKTLAELASAAGKAEQQATSLSMAA 613

Query: 318 EYIPDVSLAD----SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS--FQEVKKDI 371
             IP          + F+L K G  + +I G  G  +  V +   +        E+    
Sbjct: 614 PIIPGAGAEKKVVGAAFALDK-GATSGLIEGRTGVFMIQVVDKVEAPAKDTYLTEM---- 668

Query: 372 ANQMRITKASEKVKEDYKRLE 392
            N +R  +A++      + L+
Sbjct: 669 -NTLRNQRATKATSSVVEALK 688


>gi|152980819|ref|YP_001354064.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Janthinobacterium
           sp. Marseille]
 gi|151280896|gb|ABR89306.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Janthinobacterium
           sp. Marseille]
          Length = 307

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 62/171 (36%), Gaps = 16/171 (9%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------- 279
           + +S    +   +      S+ E++A YE+ K  +  P    V Q+   +          
Sbjct: 115 RIVSTSYLESVAQVPATYPSDAEVKAAYEQGKANFNLPASYRVAQIYLASTGTDAAATTK 174

Query: 280 -QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKK 335
            + EA +      +G  F  LA  + +       G              + D++  L K 
Sbjct: 175 LRDEAKKLATQ-ARGGDFAALARSRSQDPRSAERGGEVGMLPLEQMLPEVRDAVAKL-KV 232

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           G  +  +    G+ I  +   +P+ T + +E+K  +   +R  +  + ++ 
Sbjct: 233 GQVSEPVQSPSGFHIVKLLETQPARTATLEEIKPRLQTALRDQRQQQLIQA 283


>gi|220904185|ref|YP_002479497.1| SurA domain-containing protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868484|gb|ACL48819.1| SurA domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 311

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/359 (12%), Positives = 101/359 (28%), Gaps = 89/359 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +     V  Q +       +   ++           ++++  +  + +K+LD ++    +
Sbjct: 25  NKVAAVVNGQVITMFDLQKNALPDMARARLNPDNPADAKQVDA--IFRKVLDMMIMDILI 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q    + +      +  EIA+           +   F  +LAR+  +  E   +  K L
Sbjct: 83  AQEARRLKVSVSPADIDNEIAKLMQGRN----MTKQQFEEQLARQKSSVAELRGNIEKSL 138

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  ++ M                                  V      +   +  ++E 
Sbjct: 139 LRQKIMSM---------------------------------EVGRKVVVTPEEIRAYYEA 165

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +KD                                  Y++N              +V+  
Sbjct: 166 HKD--------------------------------TMYDRNGLHMGV--------MVYSP 185

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKG 336
           +  A      ++ G   F + A +   + +    G     +    +      +  + K G
Sbjct: 186 KVNAASIAAQIRSGALTFEEAARKYSIAPNKEKGGDMGPVEWDRLNPEWEGRLTKM-KPG 244

Query: 337 DFTPVIHGSFGYVIAHVSNIKPS----FTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           D T +         A V   +P       +S +E K  I   +R  KA E+  +   +L
Sbjct: 245 DVTELFDLQG--HKAQVHLFRPGGGGVKMLSLEEAKPQIDAILRQPKAMERFDDYTGQL 301


>gi|260909468|ref|ZP_05916172.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260636393|gb|EEX54379.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 474

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 54/393 (13%), Positives = 130/393 (33%), Gaps = 50/393 (12%)

Query: 250 NDELQAEYEKNKEK-YFSPEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKF 296
               +  Y+  +++      +  V  ++    ++A            D  + +LK+G  F
Sbjct: 107 EKAARQLYDDTRQRVDGQGGLIRVAHIMLMLPQKASKEAQNRAELRIDSIYNALKRGADF 166

Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LA     ++G +     L    K         D+ F+L K G+ +  +    GY +  
Sbjct: 167 ATLARKLSDDKGSAQQGGELPWLQKGQTLK-EFEDAAFAL-KPGEISKPVLSPAGYHVIK 224

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE-DYKRLEEFLALGTSMDEISRREKI- 410
           +   +    + +  VK DI   +  +   E++ +     + + L    +  ++ +  K+ 
Sbjct: 225 LIERR--MFLPYDSVKADILAYIEQSGMREQIIDNKLNEMAKALGTTRTTADVLQERKVQ 282

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           +    P + +  ++     +        +  +    ++ L   +  +     Y W     
Sbjct: 283 LEAKDPALKYLIQEYHDGLLLYEVSNRAVWEKAAKDEEGL--RYYFSKNKKRYAW----- 335

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                    +E        +          +KA+   ++   +   F +  + L  +   
Sbjct: 336 ---------DEPRFKGIACY--------AKTKADFKAVKKLVKKLPFSEWNEALRKAFNN 378

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
            + I R+  E   F     S V        +   IE    + +  V   K+   +E D  
Sbjct: 379 DSTI-RIKVERGMFKPGDNSLVDR--DAFKRTVSIEMNPEFPIVGVIGKKLKAPKEMDDV 435

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
            + +     + L    +  L+ QY V V++ ++
Sbjct: 436 RALVVADFQETLEKEWVKDLRKQYKVEVNEAVL 468


>gi|149372555|ref|ZP_01891667.1| possible peptidyl-prolyl cis-trans isomerase [unidentified
           eubacterium SCB49]
 gi|149354598|gb|EDM43162.1| possible peptidyl-prolyl cis-trans isomerase [unidentified
           eubacterium SCB49]
          Length = 653

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 117/361 (32%), Gaps = 61/361 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S  ++++    V  + F+  +++ L ++  +    V+             LD  V     
Sbjct: 24  SDVIMTIDGNPVYANEFVRVYQKNLELVQDESQKSVD-----------GYLDLFVDYKLK 72

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
                + GL  +                 D +     +  +L+R  +    Y D  T  L
Sbjct: 73  VAEAYEQGLNNND----------------DYRKEFSKYEEQLSRNYL----YEDKVTTDL 112

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           ++          ++ +++L+  +     ++    Y  +      A +      L   + +
Sbjct: 113 AKLAYERGKYD-LKVAHILVRSSYDDVPQDTLKAYNKIKEALDKARSGEDFGTLAGTYSE 171

Query: 220 YKDNYRAPEYKRISY-----ILFDVHEKEKKIEISN--DELQAEYEKNKEKYFSPEIR-- 270
                 A     I Y     ++    +   +  +    D ++ ++  +  K      R  
Sbjct: 172 EPGA--AERGGDIGYFSTFTMVHQFEDMAYETPVGEISDIVRTQFGYHILKVEDKRERSP 229

Query: 271 --TVEQLVFPNQKEA----------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---- 314
             TV  ++  ++  A          +E    LK+G  F  LA++  +  +    G     
Sbjct: 230 DITVSHIMISDKDNAARTFDPEERINEVNTLLKQGSSFEDLAKQYSEDKNSGKKGGKLNR 289

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
           F K  +   +  +  + L   GD +      FG+ I  +         +F+E K+ +  +
Sbjct: 290 FGKGQLRSAAFEEVAYGLKNVGDVSEPFKTEFGWHIVRLDEKH--THQTFEEQKEMLEKK 347

Query: 375 M 375
           +
Sbjct: 348 V 348



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/419 (14%), Positives = 132/419 (31%), Gaps = 71/419 (16%)

Query: 192 VDYIVLNNRHVPAIADPSNA---VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
           VDY +          + ++      +++ E+   NY   +              +  +++
Sbjct: 67  VDYKLKVAEAYEQGLNNNDDYRKEFSKYEEQLSRNYLYEDKVTTDLAKLAYERGKYDLKV 126

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EEQG 304
           ++  +++ Y+             V Q       +  EA    + G+ F  LA    EE G
Sbjct: 127 AHILVRSSYDD------------VPQDTLKAYNKIKEALDKARSGEDFGTLAGTYSEEPG 174

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK---PSFT 361
            +     +G FS   +      D  +     G+ + ++   FGY I  V + +   P  T
Sbjct: 175 AAERGGDIGYFSTFTMVHQ-FEDMAYE-TPVGEISDIVRTQFGYHILKVEDKRERSPDIT 232

Query: 362 VSFQEVKKDIANQMRITKASEKV--KEDYKRLEEFLALGTSMDEISRRE---KIVSIDLP 416
           VS   +            A+     +E    +   L  G+S ++++++    K       
Sbjct: 233 VSHIMISD-------KDNAARTFDPEERINEVNTLLKQGSSFEDLAKQYSEDKNSGKKGG 285

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            ++  GK       AA       L  V    +P   +         +  V++ E      
Sbjct: 286 KLNRFGKGQLRS--AAFEEVAYGLKNVGDVSEPFKTEF-------GWHIVRLDEKH--TH 334

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
           +  EE                       +++ +   EG   + +   +   +        
Sbjct: 335 QTFEEQK---------------------EMLEKKVGEGPRSKIVVMAVNEKIKEKYGFKG 373

Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
            DN   FF       +F+   +  + F  ++ +   +F++ +       +   FI  L 
Sbjct: 374 EDNFKPFFTEFVTDSIFNKTWDFDENFSQKDKM---LFEIGDDYTATYGDFASFIKQLQ 429



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 77/190 (40%), Gaps = 16/190 (8%)

Query: 211 AVLTQWF----EKYKDNYRA--PEYKR----ISYILFDVHEKEKKIEISNDELQAEYEKN 260
             L ++F    E+  ++Y +   EY+        +  +V +K KK  I +   +A YE +
Sbjct: 452 QELKKYFRTKLEETNEDYASVISEYRDGLLIFDVMRLNVWDKAKKDTIGS---KAYYEAH 508

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
           K+ Y   +  + + +    +     A   L  GK   ++ E   ++     + S  K   
Sbjct: 509 KQNYNWKKRISADVISSSQEDMIKVASTMLSNGKTIQEIKEALNQNDKISIIASSGKYEE 568

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
            D SL ++   + +KG  +        +VI +V +I PS    + EVK  + +  +    
Sbjct: 569 DDQSLPEN--FVIEKG-VSKPYEQHGNFVIVNVKDIIPSRVKLYDEVKGGVISDYQKQVE 625

Query: 381 SEKVKEDYKR 390
            E ++    +
Sbjct: 626 KEWMESLRDK 635



 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 61/154 (39%), Gaps = 15/154 (9%)

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
             ++     S   ++  K     L+ G ++ EI       +  + ++  +GK        
Sbjct: 515 KKRISADVISSSQEDMIKVASTMLSNGKTIQEIKEALN-QNDKISIIASSGK-------- 565

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
                +Q L   F  +  +SK +      G+++ V +K+ IP+R +  +EV   V  D++
Sbjct: 566 -YEEDDQSLPENFVIEKGVSKPYE---QHGNFVIVNVKDIIPSRVKLYDEVKGGVISDYQ 621

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
                E + S  ++  +E +K  K    + K   
Sbjct: 622 KQVEKEWMESLRDKHKVEVNK--KTLNKVKKQFD 653


>gi|332665904|ref|YP_004448692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334718|gb|AEE51819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 656

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 97/327 (29%), Gaps = 22/327 (6%)

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDV----VGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           +  +LA   +  K+  +  TK L         +   +  +       D    F      V
Sbjct: 95  YRRQLADSYLLNKQVTEKLTKELFERSQYDLDISHILFALPAEAKGADTVSTFRQAM-EV 153

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS--- 249
              +L       IA   +A  +         +    +    Y L  V  +    ++S   
Sbjct: 154 RARLLKGEDFATIAKQVSADKSAATNGGNIGFVTAMFPNGFYPLESVAYRSSFDQVSMPV 213

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--------ADEAFQSLKKGKKFIQLAE 301
              +     K   K  +     V  ++   +           D  + +LKKG  F +LA 
Sbjct: 214 RTSVGYHLVKVHSKRPARGEVEVAHILLRTEDADAMAVKMQIDTLYAALKKGLNFEELAA 273

Query: 302 EQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +  +       G    F      + +  D+ FS+AK GD++     S G+ I     I  
Sbjct: 274 KNSQDTRTADKGGYVGFVTINRFEQAFEDAAFSVAKDGDYSKPFQTSVGWHIIK--RISK 331

Query: 359 SFTVSFQEVKKDIANQMRITKASEKV-KEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
                + +++  +  +++     E   K     ++         + ++     ++     
Sbjct: 332 KEIQPYDQMRGQLEARIKRDARFEMARKAMVDDIKRETGFKDYPNLLADFATTLNDTFFT 391

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVF 444
             +     +   V     K+      F
Sbjct: 392 FQWRAPQQRTGNVLFTMAKKAYTMGDF 418


>gi|29349779|ref|NP_813282.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569857|ref|ZP_04847266.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6]
 gi|29341690|gb|AAO79476.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840238|gb|EES68320.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6]
          Length = 712

 Score = 83.9 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 87/726 (11%), Positives = 203/726 (27%), Gaps = 134/726 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     +  V  V    +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   +I    G    ++  ++  +  ++  + V+   +++  + +GL      +   +  
Sbjct: 61  EYTEVIKLSRGVTALNDE-QTNQVRDEVWRSYVNNKLVEKEAKALGLTVSAAEIQDILKA 119

Query: 120 -----ARSPLFHGK-DNKFSHD-----------------------------VF----VSR 140
                 +   F       F  D                              +       
Sbjct: 120 GVHPLLQQTPFRNPQTGAFDKDMLNKFLVDYAKMNESQMPAQYAEQYNNMYKYWSFIQKT 179

Query: 141 LAREGINEKEYIDHYTKMLSRT----------------DVVGMFVGGMRPSNLLL----- 179
           L +  + EK Y     K L                    ++          + ++     
Sbjct: 180 LVQSRLAEK-YQALVAKALLSNPVEAQDAFDARVNQYDLLMAAVPYSSIVDSTIVVKESE 238

Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224
                    +  + Y E+R + YI +       +   +    D + A L    + Y   +
Sbjct: 239 LKDLYNKKKEQFKQYQESRDIKYIDVQVTASAEDRAAIQQEVDEATAQLATTTDDYTS-F 297

Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267
                    Y+    ++     ++     +  + + Y              K   K  + 
Sbjct: 298 IRSVGSEAPYVDLFYNKTAFPSDVVARLDSASVGSVYGPYYNGADNTINSFKVVAKTAAA 357

Query: 268 EIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEY 319
           +     Q+          +  AD  + ++K G  F  LA++ G++   + +S   +    
Sbjct: 358 DSIEFRQIQVFAEDALKTKALADSIYTAIKGGANFADLAKKYGQTGETNWMSSAQYEGAQ 417

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTV-SFQEVKKDIANQMR 376
           I   +L     S         V++   G   VI  V+N K          VK+++     
Sbjct: 418 IDGDNL--KFISAINNTGVNEVVNLPLGQANVILQVTNKKAVKDKYKVAVVKREV----- 470

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
              + E     Y    +F+A   + +++    +     L  +D          +  +   
Sbjct: 471 -EFSKETYNRAYNDFSQFIAANPTAEKMIANAEEAGYKL--LDRRDLYSSEHTIGGVRGT 527

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           ++ L   F                   + V +    P   R L+ V   ++ +    K  
Sbjct: 528 KEALRWAFSAKPGDVSGLYECGESDHMVAVALVGVTPEGYRPLKAVQDQLRAEIVKDK-- 585

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF----FGYDGISQV 552
                KA +++ +         D  K +  ++  + ++                  +   
Sbjct: 586 -----KAEKIMADMKAANATSLDQYKAMSGAVSDSLKLVTFAAPAYVSALRSSEPLVGAY 640

Query: 553 FSGPVEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
            S         PI+      V ++    K+          + L  M  +     ++  L 
Sbjct: 641 ASVAEMNKLSAPIKGNAGVFVLQMYGKDKLSDTFNAKDEEATLANMHAR-FASRLMNDLY 699

Query: 612 SQYSVT 617
            +  V 
Sbjct: 700 LKGKVK 705


>gi|332880502|ref|ZP_08448176.1| hypothetical protein HMPREF9074_03951 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332681490|gb|EGJ54413.1| hypothetical protein HMPREF9074_03951 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 716

 Score = 83.9 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 60/472 (12%), Positives = 144/472 (30%), Gaps = 85/472 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56
           L+ IR  ++  +  I + +    F+     +A+ S+  +S      V  +  +++    F
Sbjct: 4   LQKIR--AKGPLLVIVIGLALFAFI---AEEAMRSIQSASNESKQQVGEIYGERISVHEF 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            N   +   ++    G    +++ +   L  ++ +  V+   ++   E++GL      + 
Sbjct: 59  QNLVDEYAEVVKFTSGNSALNDQ-QLTQLRDQVWNTYVNNKLIEHEAEELGLTVTDTEIQ 117

Query: 117 GEI--------ARSPLFHGKDNKFSHDVFVSRLAR-EGIN------EKEYIDHY------ 155
             I         ++P  + +  +F  +V    L   EG+         EY+D+Y      
Sbjct: 118 SIISEGNSPILMQTPFRNEQTGRFDANVLKKFLTDYEGMKTKSEQMPAEYMDYYNSLYKF 177

Query: 156 --------TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIA 206
                    +         +    M  + ++   A         +    +    +     
Sbjct: 178 WMFIEKTLRQESLAQKYQVLLSKAMLGNKIIDKAAFEARTNESDIIMAAVPYSTINDKDI 237

Query: 207 DPSNAVLTQWFEKYKDNYR-APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
               + L   + + K+ ++   E + I +I   V          + ++            
Sbjct: 238 KVEESDLKAKYNELKERFKQTAESRDIKFIDVQVKASAADKAALDKDM------------ 285

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
                              E   +L  G    ++  E G +++   L   SK   P+  +
Sbjct: 286 ------------------AETATALAAGGDIAKIVRESGSTINYSPL-PVSKNIFPN-DI 325

Query: 326 ADSIFSLAKKGDFTPV--IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           A  + S+A  G         G     I  V N   +           +            
Sbjct: 326 ASQLDSMA-VGQMKAPYYYAGDNTMNIIKVINKISAPD------SIQLRQIQVAGADMNA 378

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV--DFAGKDVKGKEVAAI 433
           +++    +   L  G + D I+++         +   ++ G  + G  +  I
Sbjct: 379 IQKTADSIMTALRGGVAFDSIAKKYNQTGEKTWITSRNYEGAPLDGDNLKFI 430


>gi|304405785|ref|ZP_07387443.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345028|gb|EFM10864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
          Length = 320

 Score = 83.9 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 84/238 (35%), Gaps = 15/238 (6%)

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
               TK L R     M    M    + L+ A     +  +V    L+      +    + 
Sbjct: 67  EQDLTKELHRQYGASMLRTMMLHEAVKLEAAA----QGLTVTAEQLSAELARTMEGYGSE 122

Query: 212 VLTQWFEKYKDNY---RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
              +++E+ ++     R        Y L       + I +++D++     ++  ++    
Sbjct: 123 --AEYYEEMQEQLGLSREDVQADAEYRLLLEQIATRAITVTDDQIDEYLAEHASEFTGVT 180

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEY-IPDV 323
              +  ++   + +A++  + L  G+ F  +A+              LG       + + 
Sbjct: 181 ELKLRWILTGTRSDANDVIEKLSDGEDFALMAKTYSIDAFTSEQGGDLGYIEDNDPLVEA 240

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           +L D+  SL   G  T  +    GY I  +   +    ++  + +++   Q+ + +A 
Sbjct: 241 ALLDATHSL-DVGQVTGPVKTEGGYAIIRLDERREREGMALGQRREEARRQVSLEQAR 297


>gi|293376704|ref|ZP_06622927.1| putative foldase protein PrsA [Turicibacter sanguinis PC909]
 gi|292644661|gb|EFF62748.1| putative foldase protein PrsA [Turicibacter sanguinis PC909]
          Length = 544

 Score = 83.9 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 71/191 (37%), Gaps = 17/191 (8%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK----FIQLAEE 302
            I++++LQA Y +               ++  +++ A +    L   +     F +LA+E
Sbjct: 334 PITDEQLQAAYNEYTPNIS------ARHILVEDEETAKDLIAQLDAAEDKEAKFEELAKE 387

Query: 303 QGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
             K  S      LGSF K  +      ++ F+L         +   +GY + +       
Sbjct: 388 YSKDGSASNGGDLGSFGKGQMV-SEFENAAFALNVGEYTEEPVKTQYGYHVIY--KYAED 444

Query: 360 FTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
              SF ++K ++   +R  + ++ K++    +      +  + + + +R   +  ++   
Sbjct: 445 EKPSFDDLKDELETTIRSEEYTQLKLEAILIKYRTEANVKFTDESVQKRYDAIVANIQDS 504

Query: 419 DFAGKDVKGKE 429
             A +      
Sbjct: 505 LSAEEGTDNTT 515


>gi|17545235|ref|NP_518637.1| peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum
           GMI1000]
 gi|17427526|emb|CAD14044.1| probable peptidyl-prolyl cis-trans isomerase (rotamase c) protein
           [Ralstonia solanacearum GMI1000]
          Length = 498

 Score = 83.9 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 53/409 (12%), Positives = 115/409 (28%), Gaps = 67/409 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +     ++        +  +   V    RA  +G   ++L+ L+     
Sbjct: 90  DEVVAVVNTDIITRRELLDRADLVERTLQSQNRQV--PVRADLLG---EVLEQLILERVQ 144

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G+      V   +        + N  S     S+LA+ G+   +Y +   + +
Sbjct: 145 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVSQLKSKLAQSGLAYDKYREDLRQEI 200

Query: 160 SRTDVVGMFVGGMRP------SNLLLDQ---AKRFYFENRSVDYIVLNNRHVPAIADPSN 210
               +    V            N L  Q   A     +  +V  I++      +    + 
Sbjct: 201 LLARLRDREVDSKVQVFDGEIDNFLAQQGGSAASSGVQEYNVAQILVPVAEDASAEQKAA 260

Query: 211 AVLTQ------------WFEKYKDNYRAPE-----------------YKRISYILFDVHE 241
           A                + +  +D+  APE                     + +     +
Sbjct: 261 ARGKAESLLKQVQGGADFAKLARDSSGAPEAAQGGELGLRPIGRLPAQFANAVVDLKPGQ 320

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSP-----EIRTVEQLVFPNQK--EADEAFQSLKK-- 292
              ++  S          +K    +          V  ++        AD+A + L    
Sbjct: 321 VVDQVIESPAGFHVLKLVDKRAQGTAITAKVAQTQVRHILIKTGPTMSADDARRQLAGLR 380

Query: 293 -----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
                G  F   A    +  S      LG  S   +       ++  L K G+ +  +  
Sbjct: 381 DRIVHGYDFGDAARRYSQDTSASAGGELGWVSPGQLV-PEFEQAM-GLLKPGEVSQPVQS 438

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            FG  +  V   + +        +    + +R  K     ++  ++L +
Sbjct: 439 QFGLHLIQVEGRREAEV-PVDRQRDYARSVIREQKVQAAYEDWLRQLRD 486


>gi|288924570|ref|ZP_06418507.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae D17]
 gi|288338357|gb|EFC76706.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae D17]
          Length = 474

 Score = 83.9 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 141/413 (34%), Gaps = 67/413 (16%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIR--------TVEQLVF-------PNQKEA- 283
            ++ +   +++ +++A   K ++ Y   + R            ++          Q++A 
Sbjct: 93  DQQVRPTLVTDADVEA---KARDIYRETQQRVDGGGGLLKTSHILLLLDQNATKTQQDAA 149

Query: 284 ----DEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
               D  + +LKKG  F  LA     ++  +++   L    +  +   +  D  ++L KK
Sbjct: 150 KARIDSVYNALKKGADFADLARRLSDDKSSAVNGGQLPWIERNQLVK-AYEDVAYAL-KK 207

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G+ +      +GY I  + + +P F   +  VK  I   +      + +     RL+E  
Sbjct: 208 GEISKPFLSEYGYHIVKLDDKQPFF--PYDSVKTSIYQFIESRGLRDAI--VTDRLQEEA 263

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
            +G +  E     K   +               +     Y + LL           K   
Sbjct: 264 KVGNTTPEQLLDAKTEELTAKD--------DALKYLIKEYHDGLLLYEISNRTVWDKAAK 315

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
                 +Y     K+      R                  A  V + ++   ++ S +GK
Sbjct: 316 DEAGLSAYFAKNKKKYRWEEPR--------------FKGIAYHVKTASDVDAVKRSIKGK 361

Query: 516 NFRDIGKNLGASLLTTNQIN-RMDNENKFFGYDGI--SQVFSGPVEM--VKCFPIENGLS 570
            F +    L  +    + +  R++      G + +   +VF  PV +  V+ +PI+    
Sbjct: 362 PFAEWADILRTTFNNDSVLRIRVEKGIFKKGDNAVVDKEVFKVPVTVKPVEGYPIDATFG 421

Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
            V+      K  P   +D     +       L    +  L+ +Y+V ++  ++
Sbjct: 422 KVL------KNKPEDYQDVRALVVAD-YQDALEKQWVESLRKKYTVVINKEVL 467


>gi|317153442|ref|YP_004121490.1| SurA domain-containing protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943693|gb|ADU62744.1| SurA domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 312

 Score = 83.9 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/380 (12%), Positives = 110/380 (28%), Gaps = 83/380 (21%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
             + + +  L++  +           +V V    +         +  L  I    G  +N
Sbjct: 5   IFLFISLFLLVFSTNSLAVESVYDKILVKVNEDIITQYELDEEMRPILASIK---GRELN 61

Query: 77  SERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
                 +  L ++ LD +V+   + Q I+   +      +  EI R      ++   + +
Sbjct: 62  EAEREQLADLRRQTLDRMVNDLLMTQEIKKFQITVTDTVIDDEIRRM----KEERGLTDE 117

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
            F   + R+G+  +E+      ++ + +++G  V                          
Sbjct: 118 AFEEMVKRDGLTIQEFRSKLKGLIEKQELLGYMVHS------------------------ 153

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
                        +++ +   +E  +DNY   +   +                       
Sbjct: 154 ---------KVVVTDSEIEAEYEARRDNYLLEKMVGL----------------------- 181

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGS 314
                              LV P    A E  + +  G+  F Q   +     +  S GS
Sbjct: 182 -----------------AILVLPADVSALEVRKRIMDGELTFDQAVLKYSVGPATDSGGS 224

Query: 315 FSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
             +    D++          K+G     +       +     I     V  +EV+  I  
Sbjct: 225 IGEVNWADLADDWRDSIEGVKQGGVGTPVEVRGQMALLSPVTIASDRLVPLEEVRDAIFE 284

Query: 374 QMRITKASEKVKEDYKRLEE 393
           ++   K      E +++L++
Sbjct: 285 RLMEGKRETIFDEYFEKLKQ 304


>gi|281419839|ref|ZP_06250838.1| peptidyl-prolyl cis-trans isomerase [Prevotella copri DSM 18205]
 gi|281406139|gb|EFB36819.1| peptidyl-prolyl cis-trans isomerase [Prevotella copri DSM 18205]
          Length = 716

 Score = 83.9 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 56/496 (11%), Positives = 145/496 (29%), Gaps = 86/496 (17%)

Query: 17  FLVVLFVPFLIWGL--SDALFSVSGSST-----VVSVGRQKVPFSSFINSWKQELGMISQ 69
            ++V  + F ++     +A  S   +       +  V  +K+    F     +   +I  
Sbjct: 12  VILVCIISFGLFAFIAEEAFRSCDSAKNNERQQIGEVLGEKISVQDFQKLVDEYSEVIKM 71

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG--------EIAR 121
           + G     E  +   +   + +  +    + +    +GL      +           + +
Sbjct: 72  QQGQENLPEE-QMNQVKDMVWNTYIQNQIIAKEASKLGLTVTDAELQDILKTGTNPMLQQ 130

Query: 122 SPLFHGKDNKFSHDVFVSRL-----------AREGINEK--------EYIDH-YTKMLSR 161
           +P  + +  +F        L           A   + ++         +I+    +    
Sbjct: 131 TPFVNQQTGRFDASSLQKFLADYKAQKANPSANAQMMDQYTKIYNYWSFIEKTLRQQTLA 190

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKY 220
                +  G    + +    A +   E   +         +       S + L   +++ 
Sbjct: 191 QKYQALLAGCFLSNPVEAKMAFKEENEESQIQLAAFPYSDIQDDKVKISESDLKAKYDEI 250

Query: 221 KDNYRAP-EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           K  ++ P E + I ++         +++ SN +  A  ++    +               
Sbjct: 251 KARFKQPVESRDIKFVDI-------EVQASNADRAALNKEFAGYHS-------------- 289

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                     L       ++  +   +++ + +   SK+  P   +A  + S+A  G  +
Sbjct: 290 ---------QLAAAADPTEVVRKSASTVAYLGI-PVSKDAFP-RDIAAQLDSMA-VGSTS 337

Query: 340 PVI--HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
            V    G     I  +   +         V+  +      + A  K       ++  +A 
Sbjct: 338 AVKANAGDNTLNIVKLVAKQELP----DSVQYRVIQVAANSVAEAK--TKADSIQGAIAG 391

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
           G   + I+++             A    K  E A    K+   F        ++    + 
Sbjct: 392 GADFEAIAKKYGQTGDK------AWMTTKQYEYAQSMDKDNKTFINTLNTAAVNSLSQLQ 445

Query: 458 LPDGSYMWVQIKESIP 473
           L  G Y+ +Q+ +   
Sbjct: 446 LGQG-YVVLQVLDRKA 460



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 106/349 (30%), Gaps = 27/349 (7%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF- 330
               V   + +AD    ++  G  F  +A++ G++     + +   EY   +   +  F 
Sbjct: 371 AANSVAEAKTKADSIQGAIAGGADFEAIAKKYGQTGDKAWMTTKQYEYAQSMDKDNKTFI 430

Query: 331 ---SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
              + A     + +  G  GYV+  V + K   +     V   I   +    +    +  
Sbjct: 431 NTLNTAAVNSLSQLQLGQ-GYVVLQVLDRKAMVSKYTAAV---IKKPI--DFSQGTYRTA 484

Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
           Y +   F++     +++ +        +  +      V    VA I    + L  +F   
Sbjct: 485 YNKFSSFVSANPKSEDLLKNAAKEGYKVQDLKDITTSVHY--VANIHSTREALKWIFDSK 542

Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAEEVSSKANQ 505
           +           +   + V + +      R L +  V   VK +    K AE + +K N 
Sbjct: 543 EGEISPLYECGDNNHLLVVVLDKIHHIGYRDLNDAVVKETVKAEVLKDKKAEMIEAKLN- 601

Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENKFFGYDGISQVFSGPVEMVK 561
                   G       K  G  + + NQI                     V         
Sbjct: 602 --------GVKNIAAAKAKGGKVSSVNQITFAAPVFIAATGASEPALSGAVAGTKKGAFS 653

Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
              ++      +F+VTN    PV+  DK      +        + +  L
Sbjct: 654 AHAVKGNAGVYLFQVTNKANRPVKFDDKTYQQKCRQKAMQYAGNFMNEL 702


>gi|333031477|ref|ZP_08459538.1| peptidyl-prolyl cis-trans isomerase [Bacteroides coprosuis DSM
           18011]
 gi|332742074|gb|EGJ72556.1| peptidyl-prolyl cis-trans isomerase [Bacteroides coprosuis DSM
           18011]
          Length = 712

 Score = 83.9 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 95/718 (13%), Positives = 206/718 (28%), Gaps = 132/718 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +    + +    F I G +  +F       V  V  + +  S +     
Sbjct: 4   LQNIR--SKGPLLVGAIALALFAF-IAGDALKVFQPRQPHDVGEVDGKALSISEYQLLVD 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            E   I +      +     +  +   + +  VS   +    + +GL      +   + +
Sbjct: 61  -EYTNIQKGFSGRNSLSEMETNQIKDMVWNTYVSNQVIANEADKLGLVVTKAELNNILDQ 119

Query: 122 --------SPLFHGK-DNKFSHDVFVSRLAR-------EGINEK---------------- 149
                    P+F  +   +F  D     LA         GI+                  
Sbjct: 120 GVNPTFRIVPMFFNEQTGRFDKDKLFMFLAEYAKLSKTAGIDPNYMGSMQQLHALWAFVE 179

Query: 150 -------------------------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD---- 180
                                    E        L++ ++    +      +  +     
Sbjct: 180 KSLIQEKLAEKYMALVGSAFGTNKVEVESGIEGRLNQANLTAALIPFTSVDDSKVQVTDA 239

Query: 181 ----------QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE---KYKDNYRA- 226
                     +  +   E+R V YI +      A  +     ++++ E     KDNY + 
Sbjct: 240 DLQKEYDAKKEMFKQDTESRQVKYIDVKINPSVADVEALEQEVSEYAELLRNEKDNYASI 299

Query: 227 ------------PEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFS 266
                         Y  +     DV    K+  + +         +      K  +K   
Sbjct: 300 INNTSGSNIPYNDVYLSLELYPEDVIAHVKETSVGDTFGPYTNAQDATINAVKVVDKKNL 359

Query: 267 PEIRTVEQLVFPN-QKEA-----DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
           P+      L     + +A     D    +L  G  F  +AEE+ +      +   +    
Sbjct: 360 PDSVQFRMLQIQGLEADALVKKSDSIVNALNNGASFKSIAEEEQQPSEAFWISENTIANQ 419

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITK 379
               L +++ ++      +  +    G +I  + + K          VK+       +  
Sbjct: 420 EQFVLYNTLSTMQPNEIKSLPVQS--GNIILQLVDRKVFKDKYKLAVVKR------TMEI 471

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           +SE   + Y    +F+A  +++  +    +     +   +          V  I   ++ 
Sbjct: 472 SSETANKAYNDFSQFVAENSTVQSMIDNAEEAGYSVSTQELTTSM---HTVGNISSTKEA 528

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           +  +F        +          + V + + IPA  R L  V   +K      K AE +
Sbjct: 529 VRWIFDSKTGQVSNIYECGEGDHLLVVGLTDIIPAGYRPLSYVKDGLKNLVLNNKKAEYL 588

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE---NKFFGYDGISQVFSGP 556
            ++   +        K+  D+     A + T   +                 +S   +  
Sbjct: 589 ENQIASVNA------KSISDVASIENAVVDTIKHVTFNSPAFISKTNSSEPVVSGYAAVA 642

Query: 557 VEMVKCFPIENGLSYVVFKV-----TNSKVGPVQEKDKFISYLTQ-MMNKDLLDSVIA 608
            E V   PI+   S +V  +     +  +V    E+ +  S +      + +L  +I 
Sbjct: 643 KEGVLSGPIKGNASVMVLNLLNRDKSEEEVDATVERTRIESEMMYFANGRTILQDLIE 700


>gi|329925505|ref|ZP_08280379.1| PPIC-type PPIASE domain protein [Paenibacillus sp. HGF5]
 gi|328939788|gb|EGG36128.1| PPIC-type PPIASE domain protein [Paenibacillus sp. HGF5]
          Length = 311

 Score = 83.9 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 92/277 (33%), Gaps = 32/277 (11%)

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN--------LLLDQAKRFYFENR 190
           + +    I E E++D   K   R  ++ M                    +        +R
Sbjct: 48  ASIQDRAITEDEWVDELKKRYGREMLMTMLNRHAVALEAKAKGIDVTAAEVETEIEVMSR 107

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
           S          +      + + L                   +Y L         + I  
Sbjct: 108 SYGSKERFLSEMEDQLGITESELKT---------------ETTYRLLLEKIATSDVHIEE 152

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---- 306
            ++ +  E+  +++   +   +  +   ++ EA+     L+ G+ F  LA +        
Sbjct: 153 QQIDSYLEQYPDQFRPKKQLNLSMIEVASEDEAERVMDRLENGEDFADLAAQVSLDEYTR 212

Query: 307 LSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                +G   ++       L ++  SL + GD    +  +  Y I +V +I      S +
Sbjct: 213 EDGGQIGLVEEDDPFLPPELLEAALSL-EPGDIAGPVSLTDTYAIVYVKDIIEPQAPSEE 271

Query: 366 EVKKDIANQMRITKA---SEKVKEDYKRLEEFLALGT 399
            ++K +  Q+ + ++   SE  ++  ++ E  ++ GT
Sbjct: 272 SIRKAVRKQLALEQSVSLSELERQLREKYEARISAGT 308



 Score = 38.0 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 46/128 (35%), Gaps = 7/128 (5%)

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGA---SLLTTNQINRMDNENKFFGYDGISQVF 553
           E  S    + V++  + G++F D+   +     +     QI  ++ ++ F   + +    
Sbjct: 178 EVASEDEAERVMDRLENGEDFADLAAQVSLDEYTREDGGQIGLVEEDDPFLPPELLEAAL 237

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL---LDSVIAYL 610
           S     +   P+    +Y +  V +        ++     + + +  +    L  +   L
Sbjct: 238 SLEPGDIAG-PVSLTDTYAIVYVKDIIEPQAPSEESIRKAVRKQLALEQSVSLSELERQL 296

Query: 611 KSQYSVTV 618
           + +Y   +
Sbjct: 297 REKYEARI 304


>gi|121956451|sp|Q8Y220|SURA_RALSO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 496

 Score = 83.9 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 53/409 (12%), Positives = 115/409 (28%), Gaps = 67/409 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +     ++        +  +   V    RA  +G   ++L+ L+     
Sbjct: 88  DEVVAVVNTDIITRRELLDRADLVERTLQSQNRQV--PVRADLLG---EVLEQLILERVQ 142

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G+      V   +        + N  S     S+LA+ G+   +Y +   + +
Sbjct: 143 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVSQLKSKLAQSGLAYDKYREDLRQEI 198

Query: 160 SRTDVVGMFVGGMRP------SNLLLDQ---AKRFYFENRSVDYIVLNNRHVPAIADPSN 210
               +    V            N L  Q   A     +  +V  I++      +    + 
Sbjct: 199 LLARLRDREVDSKVQVFDGEIDNFLAQQGGSAASSGVQEYNVAQILVPVAEDASAEQKAA 258

Query: 211 AVLTQ------------WFEKYKDNYRAPE-----------------YKRISYILFDVHE 241
           A                + +  +D+  APE                     + +     +
Sbjct: 259 ARGKAESLLKQVQGGADFAKLARDSSGAPEAAQGGELGLRPIGRLPAQFANAVVDLKPGQ 318

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSP-----EIRTVEQLVFPNQK--EADEAFQSLKK-- 292
              ++  S          +K    +          V  ++        AD+A + L    
Sbjct: 319 VVDQVIESPAGFHVLKLVDKRAQGTAITAKVAQTQVRHILIKTGPTMSADDARRQLAGLR 378

Query: 293 -----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
                G  F   A    +  S      LG  S   +       ++  L K G+ +  +  
Sbjct: 379 DRIVHGYDFGDAARRYSQDTSASAGGELGWVSPGQLV-PEFEQAM-GLLKPGEVSQPVQS 436

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            FG  +  V   + +        +    + +R  K     ++  ++L +
Sbjct: 437 QFGLHLIQVEGRREAEV-PVDRQRDYARSVIREQKVQAAYEDWLRQLRD 484


>gi|261403937|ref|YP_003240178.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
 gi|261280400|gb|ACX62371.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
          Length = 311

 Score = 83.9 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 92/277 (33%), Gaps = 32/277 (11%)

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN--------LLLDQAKRFYFENR 190
           + +    I E E++D   K   R  ++ M                    +        +R
Sbjct: 48  ASIQDRAITEDEWVDELKKRYGREMLMTMLNRHAVALEAKAKGIDVTTAEVETEIEVMSR 107

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
           S          +      + + L                   +Y L         + I  
Sbjct: 108 SYGSKERFLSEMEDQLGITESELKT---------------ETTYRLLLEKIATSDVHIEE 152

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---- 306
            ++ +  E+  +++   +   +  +   ++ EA+     L+ G+ F  LA +        
Sbjct: 153 QQIDSYLEQYPDQFRPKKQLNLSMIEVASEDEAERVMDRLENGEDFADLAAQVSLDEYTR 212

Query: 307 LSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                +G   ++       L ++  SL + GD    I  +  Y I +V +I      S +
Sbjct: 213 EDGGQIGLVEEDDPFLPPELLEAALSL-EPGDIAGPISLTDTYAIVYVRDIIEPQAPSEE 271

Query: 366 EVKKDIANQMRITKA---SEKVKEDYKRLEEFLALGT 399
            ++K +  Q+ + ++   +E  ++  ++ E  ++ GT
Sbjct: 272 SIRKAVRKQLALEQSVSLTELERQLREKYEARISAGT 308



 Score = 38.0 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 46/128 (35%), Gaps = 7/128 (5%)

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGA---SLLTTNQINRMDNENKFFGYDGISQVF 553
           E  S    + V++  + G++F D+   +     +     QI  ++ ++ F   + +    
Sbjct: 178 EVASEDEAERVMDRLENGEDFADLAAQVSLDEYTREDGGQIGLVEEDDPFLPPELLEAAL 237

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL---LDSVIAYL 610
           S     +   PI    +Y +  V +        ++     + + +  +    L  +   L
Sbjct: 238 SLEPGDIAG-PISLTDTYAIVYVRDIIEPQAPSEESIRKAVRKQLALEQSVSLTELERQL 296

Query: 611 KSQYSVTV 618
           + +Y   +
Sbjct: 297 REKYEARI 304


>gi|146310266|ref|YP_001175340.1| peptidyl-prolyl cis-trans isomerase SurA [Enterobacter sp. 638]
 gi|145317142|gb|ABP59289.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter sp.
           638]
          Length = 428

 Score = 83.9 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 109/369 (29%), Gaps = 57/369 (15%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKVTDEQLDQAIANI----SKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLS-------------------RTDVVGMFVGGMR 173
           + D   SRLA +GI+   Y +   K +                       +         
Sbjct: 110 TLDQMRSRLAYDGISYATYRNQIRKEMLISEVRNNEVRRRVTILPQEVDQLAKQVGNQND 169

Query: 174 PSNLL--------------LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            S  L               DQA     + RS+     N      +A   +A        
Sbjct: 170 ASTELNLSHILVPLPENPTSDQAAEAESQARSIVEQARNGGDFGKLAITYSADQQALKGG 229

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQ 274
                R  E   I        +K   +      +     K  ++    +           
Sbjct: 230 QMGWGRIQELPSIFGQALSTAKKGDIVGPIRSGVGFHILKVNDRRGQSQNISVTEVHARH 289

Query: 275 LVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321
           ++          +A    ++    +K GK  F   A+E  +     + G    ++   I 
Sbjct: 290 ILLKPSPIMTDDQARVKMEQIAADIKSGKTSFANAAKEFSQDPGSANQGGDLGWAAADIY 349

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           D +  D++  L  KG  +  +H +FG+ +  + + + +   +    K      +   K S
Sbjct: 350 DPAFRDALMKL-NKGQMSAPVHSTFGWHLIELLDTR-NVDKTDAAQKDRAYRMLFNRKFS 407

Query: 382 EKVKEDYKR 390
           E+     + 
Sbjct: 408 EEAATWMQE 416



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 76/237 (32%), Gaps = 17/237 (7%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278
             YR    K +       +E  +++ I   E+    ++   +  +     +  ++ P   
Sbjct: 126 ATYRNQIRKEMLISEVRNNEVRRRVTILPQEVDQLAKQVGNQNDASTELNLSHILVPLPE 185

Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328
                     + +A    +  + G  F +LA         +  G      I +  S+   
Sbjct: 186 NPTSDQAAEAESQARSIVEQARNGGDFGKLAITYSADQQALKGGQMGWGRIQELPSIFGQ 245

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKVKE 386
             S AKKGD    I    G+ I  V++ +  S  +S  EV    I  +       ++ + 
Sbjct: 246 ALSTAKKGDIVGPIRSGVGFHILKVNDRRGQSQNISVTEVHARHILLKPSPIMTDDQARV 305

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
             +++   +  G +    +   K  S D    +  G           P     L ++
Sbjct: 306 KMEQIAADIKSGKT--SFANAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDALMKL 360


>gi|157147527|ref|YP_001454846.1| peptidyl-prolyl cis-trans isomerase SurA [Citrobacter koseri ATCC
           BAA-895]
 gi|157084732|gb|ABV14410.1| hypothetical protein CKO_03327 [Citrobacter koseri ATCC BAA-895]
          Length = 428

 Score = 83.9 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 108/369 (29%), Gaps = 57/369 (15%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDEQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191
           + D   SRLA +G++   Y     K +  ++V        +      +D   +       
Sbjct: 110 TLDQMRSRLAYDGLSYSTYRSQIRKEMIISEVRNNEVRRRVTILPQEVDALAQQVGNQND 169

Query: 192 VDY------IVLNNRHVPAIADPSNAVLTQW------------------FEKYKDNY--- 224
                    I++     P     S A                       +   +      
Sbjct: 170 ASTELNLSHILIPLPENPTSDQVSEAEARARSIVDEARNGSDFGKLAITYSADQQALKGG 229

Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQ 274
                R  E   I        +K   +      +     K  +     +           
Sbjct: 230 QMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARH 289

Query: 275 LVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321
           ++         ++A    +E    +K GK  F   A+E  +     + G    ++   I 
Sbjct: 290 ILLKPSPIMTDQQARLKLEEIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAAADIF 349

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           D +  D++  L  KG  +  +H SFG+ +  + + + +   +    K      +   K S
Sbjct: 350 DPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKTDAAQKDRAYRMLMNRKFS 407

Query: 382 EKVKEDYKR 390
           E+     + 
Sbjct: 408 EEAATWMQE 416


>gi|319941329|ref|ZP_08015660.1| hypothetical protein HMPREF9464_00879 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805250|gb|EFW02073.1| hypothetical protein HMPREF9464_00879 [Sutterella wadsworthensis
           3_1_45B]
          Length = 268

 Score = 83.9 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 70/166 (42%), Gaps = 5/166 (3%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            +  +   V+E  KK  ++  EL+ EY+K  +++   E R V  ++   Q EA +    +
Sbjct: 99  DMVLMKHAVNEYVKKNPVTEKELKDEYQKESDRWGKTEYR-VRHILVKTQDEAKQIIDQI 157

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            KG  F ++A E+         G    ++   +    L+ +I  L K       +    G
Sbjct: 158 NKGASFAKIAAEKSLDEESKDRGGILDWTSASVFTGQLSSAIMGLKKGEMDKVPVQSPAG 217

Query: 348 YVIAHVSNIKPSFT-VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + +  V +++P+     ++  K+++ + +   K    + E   R E
Sbjct: 218 FHVVKVEDVRPAELYPKYEARKEELRHILLQRKVQAFIHEQVLRAE 263


>gi|260773615|ref|ZP_05882531.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio metschnikovii CIP
           69.14]
 gi|260612754|gb|EEX37957.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio metschnikovii CIP
           69.14]
          Length = 431

 Score = 83.9 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 69/480 (14%), Positives = 140/480 (29%), Gaps = 101/480 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    +  S   ++               +  E      L ++I++ L+     
Sbjct: 28  DRVAVIVNSGVILQSDIDSALLTVRANAKTN-QQTLPPENI----LREQIIEKLIVDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG+  D   +   I         +N+ + +     +A +G+   E+ +   K +
Sbjct: 83  QQEADRIGVRIDDNTLNDAITEI----AHNNQQTPEQLRLSIAEQGLTYPEFREQIRKEI 138

Query: 160 SRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           + ++     V   +      +D       +  S                           
Sbjct: 139 AASEARNALVRRRINIIPAEVDTLAELLAQETSATV------------------------ 174

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                       +IS+I    ++ + K E+                              
Sbjct: 175 ----------QYKISHIQLRFNDGQDKSEV------------------------------ 194

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            + +A++    L +G  F  +A    K   +L     G   KE +P    AD I  +  K
Sbjct: 195 -EAQANKLVAELNQGADFSTMAITYSKGPRALQGGDWGWMRKEEMP-TIFADQI-KMQNK 251

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDY 388
           G          G+ I  + +IK   TV+  EV       K  I   +    A  ++ +  
Sbjct: 252 GSIIGPFRSGVGFHILKIDDIKGLETVAVTEVNARHILIKPTII--LSDEGAKNQLNDLV 309

Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
           +R+    A   S  E++++    S D       G+         +P  +  +  +     
Sbjct: 310 RRIN---AGEASFAELAQQY---SQDPGSAAQNGELGYQTPELYVPEFKHQIETL----- 358

Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
           P+            +  V++ +     DR    +     +     K  EE S+   +L  
Sbjct: 359 PVGTISEPFKTVHGWHIVEVLDRR-EVDRTDAAMKNRAYRILFNRKFNEEASTWLQELRA 417


>gi|53725016|ref|YP_102044.1| survival protein SurA [Burkholderia mallei ATCC 23344]
 gi|67641452|ref|ZP_00440230.1| chaperone SurA [Burkholderia mallei GB8 horse 4]
 gi|121598370|ref|YP_994032.1| putative survival protein SurA [Burkholderia mallei SAVP1]
 gi|124385555|ref|YP_001028304.1| putative survival protein SurA [Burkholderia mallei NCTC 10229]
 gi|126449043|ref|YP_001081948.1| putative survival protein SurA [Burkholderia mallei NCTC 10247]
 gi|254176840|ref|ZP_04883497.1| putative survival protein SurA [Burkholderia mallei ATCC 10399]
 gi|254203730|ref|ZP_04910090.1| putative survival protein SurA [Burkholderia mallei FMH]
 gi|254208705|ref|ZP_04915053.1| putative survival protein SurA [Burkholderia mallei JHU]
 gi|81685183|sp|Q62MM4|SURA_BURMA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|52428439|gb|AAU49032.1| survival protein SurA, putative [Burkholderia mallei ATCC 23344]
 gi|121227180|gb|ABM49698.1| putative survival protein SurA [Burkholderia mallei SAVP1]
 gi|124293575|gb|ABN02844.1| putative survival protein SurA [Burkholderia mallei NCTC 10229]
 gi|126241913|gb|ABO05006.1| putative survival protein SurA [Burkholderia mallei NCTC 10247]
 gi|147745242|gb|EDK52322.1| putative survival protein SurA [Burkholderia mallei FMH]
 gi|147750581|gb|EDK57650.1| putative survival protein SurA [Burkholderia mallei JHU]
 gi|160697881|gb|EDP87851.1| putative survival protein SurA [Burkholderia mallei ATCC 10399]
 gi|238522391|gb|EEP85835.1| chaperone SurA [Burkholderia mallei GB8 horse 4]
          Length = 448

 Score = 83.5 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 48/410 (11%), Positives = 121/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 39  DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D+  V   + R      + N    D + +R+  +G+    ++      L
Sbjct: 94  VQRAKDDGIVVDNATVQATLGRL----AQANGMQLDQYKARIEAQGVPWDLFVRDARTEL 149

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211
             + +    V   +  S+  +               ++  +++I +        AD   A
Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAPQADIDVA 209

Query: 212 VLTQ---------------WFEKYKDN-----------YRAPEYKRISYILFDVHEKEKK 245
                                 K +             +++P       +      +  +
Sbjct: 210 QKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPASLPSDVVDAVSKLRPGE 269

Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286
           +  +   +   +E          +N           V  ++       ++ +A +     
Sbjct: 270 VNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S    P      ++ +L + G  +  + 
Sbjct: 330 RRQIESGGDFEKFARTYSQDGSASQGGDLGWISPGE-PVPEFERAMNTL-QDGQVSNPVR 387

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436


>gi|90416848|ref|ZP_01224777.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma
           proteobacterium HTCC2207]
 gi|90331195|gb|EAS46439.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma
           proteobacterium HTCC2207]
          Length = 434

 Score = 83.5 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 59/431 (13%), Positives = 126/431 (29%), Gaps = 68/431 (15%)

Query: 19  VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
            +L V    + ++ +         V  V    V  S            I Q+ G     +
Sbjct: 10  ALLAVLLGAFSVTASAQIEILDKVVAIVDEDVVLESEVQRRLATIYAQI-QQSGTQPPPQ 68

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
                 + +++L+ L+S           G+      +   +AR      K N+ + + + 
Sbjct: 69  EI----IVQQVLERLISERLQLNMGYSAGIRITDAELNDAMARI----AKSNQLTMEQYA 120

Query: 139 SRLAREGINEKEYIDHYT-KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR------- 190
            ++   G       +    +M+      G  +  +R SN  LD       E R       
Sbjct: 121 EQIHATGSTLSNVREEIRNEMILMRVQQGQVMRRIRISNQELDNFLN-SEEGRFMTSPDV 179

Query: 191 SVDYIVLNNRHVPAIADP---------------SNAVLTQWFEKYKDNYRAPEYKRISYI 235
           +V +I+L         +                S     Q       +  A +   + + 
Sbjct: 180 NVGHILLPVPSGKNTDEVNAILQRAQGILDQANSGTDFRQLAIANSADQTALQGGDLGWR 239

Query: 236 LFDVHEKEKKIEISNDELQ---------------AEYEKNKEKYFSPEIRTVEQLVFPNQ 280
                       +   E+                  YE+        E      ++    
Sbjct: 240 KMAQLPGVFIEAVEKLEIDQVSEPIRSDAGYHLIKLYERKGGGEQLIEQHFARHILIKPN 299

Query: 281 KEADEA---------FQSLKKGKKFI----QLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  DEA          + +K G+ F     + +E+ G +L+   LG  +           
Sbjct: 300 QIRDEATVVSQLTELRERIKAGEDFALLTKEFSEDPGSALNGGELGWSTPGMFV-PEFEQ 358

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE--VKKDIANQMRITKASEKVK 385
           ++ S+ +  + +      FG+ I  V+  +      F E   +    N +R  K  E+++
Sbjct: 359 TMGSI-ELNEVSAPFLSQFGWHILQVTERR---NQDFSENITRNRAQNLLRQRKYEEELQ 414

Query: 386 EDYKRLEEFLA 396
              + + +   
Sbjct: 415 VWLQEIRDEAF 425



 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/394 (13%), Positives = 114/394 (28%), Gaps = 47/394 (11%)

Query: 139 SRLAREGINEKEYIDHYTKMLSRT-----DVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           +++ + G           ++L R       +   +  G+R ++  L+ A       R   
Sbjct: 56  AQIQQSGTQPPPQEIIVQQVLERLISERLQLNMGYSAGIRITDAELNDAMA-----RIAK 110

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
              L           + + L+   E+ ++         +  +     +  ++I ISN EL
Sbjct: 111 SNQLTMEQYAEQIHATGSTLSNVREEIRNE--------MILMRVQQGQVMRRIRISNQEL 162

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADEAFQSLKKGKKFIQLAE 301
                  + ++ +     V  ++ P              + A         G  F QLA 
Sbjct: 163 DNFLNSEEGRFMTSPDVNVGHILLPVPSGKNTDEVNAILQRAQGILDQANSGTDFRQLAI 222

Query: 302 EQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
                   L    LG      +P V +        +    +  I    GY +  +   K 
Sbjct: 223 ANSADQTALQGGDLGWRKMAQLPGVFIE--AVEKLEIDQVSEPIRSDAGYHLIKLYERKG 280

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
                 ++      + +              +L E      + ++ +   K  S D    
Sbjct: 281 GGEQLIEQHFA--RHILIKPNQIRDEATVVSQLTELRERIKAGEDFALLTKEFSEDPGSA 338

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
              G+         +P  EQ +  +      L++     L    +  +Q+ E    R++ 
Sbjct: 339 LNGGELGWSTPGMFVPEFEQTMGSI-----ELNEVSAPFLSQFGWHILQVTER---RNQD 390

Query: 479 LEE--VLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
             E       +   +  K  EE+     ++  E 
Sbjct: 391 FSENITRNRAQNLLRQRKYEEELQVWLQEIRDEA 424


>gi|251767814|ref|ZP_02268497.2| putative survival protein SurA [Burkholderia mallei PRL-20]
 gi|254360242|ref|ZP_04976512.1| putative survival protein SurA [Burkholderia mallei 2002721280]
 gi|148029482|gb|EDK87387.1| putative survival protein SurA [Burkholderia mallei 2002721280]
 gi|243061646|gb|EES43832.1| putative survival protein SurA [Burkholderia mallei PRL-20]
          Length = 450

 Score = 83.5 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 48/410 (11%), Positives = 121/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 41  DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 95

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D+  V   + R      + N    D + +R+  +G+    ++      L
Sbjct: 96  VQRAKDDGIVVDNATVQATLGRL----AQANGMQLDQYKARIEAQGVPWDLFVRDARTEL 151

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211
             + +    V   +  S+  +               ++  +++I +        AD   A
Sbjct: 152 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAPQADIDVA 211

Query: 212 VLTQ---------------WFEKYKDN-----------YRAPEYKRISYILFDVHEKEKK 245
                                 K +             +++P       +      +  +
Sbjct: 212 QKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPASLPSDVVDAVSKLRPGE 271

Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286
           +  +   +   +E          +N           V  ++       ++ +A +     
Sbjct: 272 VNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 331

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S    P      ++ +L + G  +  + 
Sbjct: 332 RRQIESGGDFEKFARTYSQDGSASQGGDLGWISPGE-PVPEFERAMNTL-QDGQVSNPVR 389

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 390 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 438


>gi|312860326|gb|ADR10202.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium enrichment
           culture clone F5-11]
          Length = 290

 Score = 83.5 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 64/162 (39%), Gaps = 8/162 (4%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            +        + E  KKIEI +  +   Y +  + +       + Q+V  ++  A     
Sbjct: 123 QRDTLIAQRFLAEASKKIEIDDAAIAEYYAQLPKHF----EYDLRQIVTADEASARAVIA 178

Query: 289 SLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            LK G  F QLA E  ++    +  SLG    E +P  ++AD++ ++         +   
Sbjct: 179 KLKDGADFAQLASEMSQAPEAANGGSLGWLMAEQLP-TTIADAVRAMQAGTFTDQPLQTP 237

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
            G+ +  V  ++    V  +  +  I  ++R  K  + + + 
Sbjct: 238 QGWHVVRVEGVRQLEQVPLETARAWIEGELRNQKIQQMIDQM 279



 Score = 45.8 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 74/229 (32%), Gaps = 11/229 (4%)

Query: 398 GTSMDEISRREKIVSIDLPL--VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           G +  E +   +           +   + +  + +      ++   + FG DD    +  
Sbjct: 62  GVTRQEKASEAEATGQTAQPELTEADHQAILDRLITLEAVVQEAAKQGFGTDDAFLHELA 121

Query: 456 VALPD--GSYMWVQIKESIPARDRKLEEVLTDV----KKDWKTVKTAEEVSSKANQLVLE 509
           +            +  + I   D  + E    +    + D + + TA+E S++A   V+ 
Sbjct: 122 LQRDTLIAQRFLAEASKKIEIDDAAIAEYYAQLPKHFEYDLRQIVTADEASARA---VIA 178

Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
             K+G +F  +   +  +    N  +      +         V +         P++   
Sbjct: 179 KLKDGADFAQLASEMSQAPEAANGGSLGWLMAEQLPTTIADAVRAMQAGTFTDQPLQTPQ 238

Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
            + V +V   +       +   +++   +    +  +I  +++   V +
Sbjct: 239 GWHVVRVEGVRQLEQVPLETARAWIEGELRNQKIQQMIDQMRASAKVEI 287



 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSW---KQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           SG+  V +V  + +P   F       +QE    ++  G     E   +    + ILD L+
Sbjct: 39  SGNEPVATVNGRPIPRGVFEVMLGVTRQEKASEAEATGQTAQPELTEAD--HQAILDRLI 96

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIAR 121
           +   + Q     G   D   +     +
Sbjct: 97  TLEAVVQEAAKQGFGTDDAFLHELALQ 123


>gi|331000016|ref|ZP_08323712.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
           YIT 11859]
 gi|329573164|gb|EGG54781.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
           YIT 11859]
          Length = 268

 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 69/176 (39%), Gaps = 5/176 (2%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E +   Y    V +      +++ +L+  YE+ K++Y  P    V  ++   ++EA +  
Sbjct: 88  ERQTEIYSAELVRKNAAAHPLTDADLKKTYEEVKKQY-DPNEIKVRHILVKTEQEAKDII 146

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           +SL  G  F  +A+E+       + G      +   I     A++  +L K        H
Sbjct: 147 KSLNAGGDFATIAKEKSLDQGTAAQGGEIPFTNIRRIAIPGFAETAMALNKGALLPVPFH 206

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
            + GY +  + + +     SF  +K  I N     +A + + +  K  +   A   
Sbjct: 207 SALGYHVIQLQDKREVPLPSFDALKPQIQNLAAQRQAQQYMADLMKNAKIAEAAPA 262


>gi|31789450|gb|AAP58564.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
          Length = 434

 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 80/224 (35%), Gaps = 29/224 (12%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  RI    +   +  +K++ ++ E+ A   ++ +                N+ +A+E  
Sbjct: 197 EQARILAQTYAQEQLAEKMKATDAEIDAYIAQHPDLDAK-----------QNRGKAEEVL 245

Query: 288 QSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           + +K G+ F +LA+E             LG F++  +       + F+L K G+ + ++ 
Sbjct: 246 KRVKAGEDFAKLAKEFSTDPGSKEKGGDLGWFAQGAMV-PEFEQAAFAL-KPGEVSDLVE 303

Query: 344 GSFGYVIAHVSNIKPSFT--VSFQEVKKDIANQMRITKASE--------KVKEDYKRLEE 393
            SFGY I  V   K         ++V     + +    A          K ++  +   E
Sbjct: 304 SSFGYHIIKVEERKTETKDGKPQEQVHA--RHILIGDSAKSDNPFAPPMKGRDKARAAVE 361

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
                  +DEI +R  +   +   V    +          P  +
Sbjct: 362 EEKQKKVLDEIVKRSHVTVAENFQVKMPEQQQMPGLPPGFPQAD 405


>gi|90580797|ref|ZP_01236600.1| putative survival protein SurA [Vibrio angustum S14]
 gi|90438065|gb|EAS63253.1| putative survival protein SurA [Vibrio angustum S14]
          Length = 433

 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 77/495 (15%), Positives = 152/495 (30%), Gaps = 90/495 (18%)

Query: 22  FVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
            +  ++ G+S    +        V++V    +  S   ++  + + + + +    +    
Sbjct: 8   VLSLMMMGMSATSMAAPQELDQVVMTVNDGVILQSDV-SAMLKTVRLNAAEEHQQLPPNN 66

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                L ++++D L+      Q  + +G+  D  ++   IA       K    S D    
Sbjct: 67  I----LRQQVMDQLILENLQIQQAQQLGIRIDDSQLDQAIADV----AKQRNMSVDQLRQ 118

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            LA+ G++   + +     +                            E R++       
Sbjct: 119 SLAKAGVSYSMFREQMRNDM-------------------------LASEARTII------ 147

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
             V    +     +    ++  +  +      IS I   V E   K E            
Sbjct: 148 --VRKRVNVLPQEVESLAKQMAEQTQQNVQYNISQIQIRVDEDADKAERDKA-------- 197

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFS 316
                               ++EA++    LKKG  F QLA       K+L     G  S
Sbjct: 198 --------------------KQEAEDIVAQLKKGANFSQLAYRYSKGPKALKGGEWGWMS 237

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IAN 373
           K  +P    AD I +  K            GY I  ++++K   +VS  EVK     I  
Sbjct: 238 KAEMP-TVFADQIQNNGKD-AIIGPFRSGVGYHILKINDVKGMPSVSVVEVKARHILIKP 295

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
            M ++ A+ K +   +++ + +  G      +   K  S D       G+          
Sbjct: 296 SMILSDAAAKAE--LEKIRQSIISGK--QTFAAAAKAYSEDPGSAANGGQLGWQVPDMYA 351

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
           P  +  +  +     P+ K          +  V+++      DR    +     +     
Sbjct: 352 PAFKDKVETL-----PVDKISEPFKSTFGWHIVEVEGRRKV-DRTDAAMKNRAAQIIFNR 405

Query: 494 KTAEEVSSKANQLVL 508
           K  EE  +   +L  
Sbjct: 406 KFNEEAQTWLQELRA 420


>gi|163855066|ref|YP_001629364.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii DSM
           12804]
 gi|163258794|emb|CAP41093.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii]
          Length = 516

 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/319 (11%), Positives = 87/319 (27%), Gaps = 53/319 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V +  +      +   +    +  + G  V         L +++L +L+     
Sbjct: 59  DGIAAVVNKDVITLREVESGAARATEDLKHR-GIQVPPPDV----LRRQVLQSLIMERLQ 113

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+  +  ++   I          N+       + + + G+   +Y       +
Sbjct: 114 KQEADRLGIRVNDAQIDQAIETIAG----RNRIPVAQMRAEIEKSGVTWAQYRQSLGNDI 169

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
               +        +  ++  +D   +    N +                P+ +       
Sbjct: 170 RMNRLRQRAVDSNIIITDAEVDAFLKDRAHNPAAGTGFSGQPAGQRAPQPTQS------- 222

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                   PE   ++ IL  V E     E++                             
Sbjct: 223 -------GPEQVALAQILVRVPEGASSSEVARL--------------------------- 248

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-SKEYIPDVSLADSIFSLAKKGD 337
            +K+A+     L++G  F  LA         +  G   ++       L     +  + G 
Sbjct: 249 -RKKAEGLLAQLQQGGDFANLAASSSDGPEALQGGVMGARPLDGWPDLFIKAIASLQPGQ 307

Query: 338 FTPVIHGSFGYVIAHVSNI 356
            + +I    G+ I  V + 
Sbjct: 308 VSGLIQSGNGFHILKVLDR 326



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 16/147 (10%)

Query: 269 IRTVEQLVFPNQK--EADEAFQSLKK--------GKKFIQLAEEQGKSLS---DISLGSF 315
                 ++         D+A Q L++        G  F  +A +  +  +      LG  
Sbjct: 363 QTHARHILIKTSAVMSDDQARQRLEQIRQRIVNGGASFADMARQYSQDANAPQGGDLGWV 422

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           +   +   S   ++ +L   G  +  +   FG+ +  V   +    VS +  +      +
Sbjct: 423 NPGEMV-PSFEQAMNALP-VGGVSQPVLSPFGWHLIQVEERRE-HDVSDELQRMQARQIL 479

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMD 402
              +A    ++   +L     +   ++
Sbjct: 480 FERRAEPAFEDWLAQLRNEAYIDNRLE 506


>gi|327312552|ref|YP_004327989.1| putative phage tail component, N-terminal domain-containing protein
           [Prevotella denticola F0289]
 gi|326944288|gb|AEA20173.1| putative phage tail component, N-terminal domain protein
           [Prevotella denticola F0289]
          Length = 474

 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 66/431 (15%), Positives = 140/431 (32%), Gaps = 52/431 (12%)

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--DELQAEYEKNKEKYFSPE-I 269
           +    + + D    P +++      +   +   I  ++  DE +  Y   K++  +   +
Sbjct: 70  VQAALDAHLD--TLPAFRKEFLGYRNQQIRPAFITDADVEDEARKIYRDTKQQIDANGGL 127

Query: 270 RTVEQLVF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS--- 314
                ++               ++ AD  + +L+KG  F  LA+      S    G    
Sbjct: 128 WHCAHILIGMGQHTSKEEEAAARQLADSIYTALQKGADFADLAKRYSTDTSSAKNGGDLP 187

Query: 315 -FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
              K          ++ +L K G+ +  +   FG+ I  +   +      +  ++ DI  
Sbjct: 188 RLQKGQTV-AEFEKAMLTL-KPGETSRPVLSPFGFHIIRMIGHE--SLPPYDSLRSDIMQ 243

Query: 374 QMRITKASEKVKEDYKRLEEFL-ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
            + +    +++    +RL+  + A G  +     +E+I+   L  ++    D+K      
Sbjct: 244 YIEMRGLRDQIIN--QRLDSLVQAGGKDI----TQEQILDRKLAELEEKDADLKR---LI 294

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
             Y + LL           K         +Y     K+   A  R               
Sbjct: 295 REYHDGLLMVEMSNRTVWDKVAKDETALEAYFRKHRKQYKWAEPR--------------F 340

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
              A  V  KA+   ++   +G  F    + L  +      I R+  E   F     + +
Sbjct: 341 KGIAYHVKKKADVDAVKECVKGLPFSKWAERLRNTFNKDGNI-RIRVEKGIFRKGDNALI 399

Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
                          G  Y +  V   K+   +E D     +     ++L  S +A L+ 
Sbjct: 400 DREVFGQKATVAPVEG--YPIDAVFGKKIKAPEELDDVRDLVISNCQEELEKSWVAALRR 457

Query: 613 QYSVTVHDNLI 623
           +Y V +   ++
Sbjct: 458 KYKVVIDKAVL 468


>gi|297568379|ref|YP_003689723.1| hypothetical protein DaAHT2_0398 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924294|gb|ADH85104.1| hypothetical protein DaAHT2_0398 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 559

 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 114/301 (37%), Gaps = 31/301 (10%)

Query: 94  VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
           ++   L +      +E +  R+      +P     D+ F  +V V+  +R+ + E+++I 
Sbjct: 263 LTRQLLAELRRKYQVEINEQRLAELDINAP-----DDAFGDEVLVAT-SRQNLTERDFIA 316

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
              + ++                   D A   + E ++ +          A +  +   L
Sbjct: 317 MVRRDMTMR----------------PDAAHAAFDEEKAAEIKDRVVDGFIAQSLTNWESL 360

Query: 214 TQWFEKYKDNYRAPEYKRISYIL---FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
            + +EK ++ ++      +++ L    +      ++++ +D ++  YE+N   +  P   
Sbjct: 361 ARGYEK-REPFKGEYDFHVNHRLSVTLERRLFADQVKVDDDMVRRHYEENLAHFSRPAHV 419

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
            +  ++  ++   ++ +  +  GK+F +  +E          G        D  +   + 
Sbjct: 420 RL-NIITNDEGPVNQVWAEVVAGKEFSRAVQEH---FGRRIPGQEVPINHLDPRVRGVVE 475

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            LA  G+ +         V+ H+ +  P   + F+ V  +I +++   K ++  +    +
Sbjct: 476 KLA-PGETSAPFDAQGSRVVVHLIDRVPENPLPFERVAGNIRDRLVREKTAQLRQSYLDQ 534

Query: 391 L 391
           L
Sbjct: 535 L 535



 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 67/161 (41%), Gaps = 8/161 (4%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           + ++        +I+++  +L+A+YEK            VE+L F N +EA  A++ L+ 
Sbjct: 117 ALLMLKNEAVNSRIKVTEADLKAQYEKEYLP-----RWQVERLHFRNAEEAVAAWEELQA 171

Query: 293 GK-KFIQL-AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           G     +L A E  +        ++ +        A+ IF+  +KG+         G ++
Sbjct: 172 GNLTVAELLAREPDEGGPVTRQVNWHRPQGIAPGWAE-IFNNMEKGEVADPEKHHGGLML 230

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            H+  +K      FQ +++ +   +   + +   ++    L
Sbjct: 231 FHLKEVKGGDAEDFQRMRESLHRDVWKEQEAALTRQLLAEL 271



 Score = 38.8 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 44/109 (40%), Gaps = 5/109 (4%)

Query: 520 IGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
           + + L         + R  N ++  G   G +++F+   +     P ++    ++F +  
Sbjct: 176 VAELLAREPDEGGPVTRQVNWHRPQGIAPGWAEIFNNMEKGEVADPEKHHGGLMLFHLKE 235

Query: 579 SKVGPVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVTVHDNLI 623
            K G  ++  +    L + +       L   ++A L+ +Y V +++  +
Sbjct: 236 VKGGDAEDFQRMRESLHRDVWKEQEAALTRQLLAELRRKYQVEINEQRL 284



 Score = 37.3 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 73/532 (13%), Positives = 145/532 (27%), Gaps = 100/532 (18%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           G  T++++   +     F   W+          G  V               D  +    
Sbjct: 46  GGDTLLTIDGVEYSTEDFKGWWQ-----YWNDEGLAVPPTP-----------DLYIDWLL 89

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI------NEKEYI 152
           L +  E +           E+A  P F  +   F     +  L  E +       E +  
Sbjct: 90  LVREAERM-----------ELAGDPSFQRQTRVFLTSRALLMLKNEAVNSRIKVTEADLK 138

Query: 153 DHYTKM-LSRTDV---------------VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
             Y K  L R  V                 +  G +  + LL  +        R V++  
Sbjct: 139 AQYEKEYLPRWQVERLHFRNAEEAVAAWEELQAGNLTVAELLAREPDEGGPVTRQVNWHR 198

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF--------DVHEKEKKIEI 248
                 P    P  A +  +    K     PE      +LF        D  + ++  E 
Sbjct: 199 ------PQGIAPGWAEI--FNNMEKGEVADPEKHHGGLMLFHLKEVKGGDAEDFQRMRES 250

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
            + ++  E E    +    E+R   Q+    Q+ A+    +         L     ++L+
Sbjct: 251 LHRDVWKEQEAALTRQLLAELRRKYQVEINEQRLAELDINAPDDAFGDEVLVATSRQNLT 310

Query: 309 DIS-LGSFSKEYIPDVSLADSIFSLAKKGDFTP-------------------------VI 342
           +   +    ++       A + F   K  +                              
Sbjct: 311 ERDFIAMVRRDMTMRPDAAHAAFDEEKAAEIKDRVVDGFIAQSLTNWESLARGYEKREPF 370

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVK---KDIANQMRITKA--SEKVKEDYKRLEEFLAL 397
            G + + + H  ++     +   +VK     +        A  S         +      
Sbjct: 371 KGEYDFHVNHRLSVTLERRLFADQVKVDDDMVRRHYEENLAHFSRPAHVRLNIITND--E 428

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
           G      +           + +  G+ + G+EV       ++  R   +     +     
Sbjct: 429 GPVNQVWAEVVAGKEFSRAVQEHFGRRIPGQEVPINHLDPRV--RGVVEKLAPGETSAPF 486

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
              GS + V + + +P      E V  +++      KTA+   S  +QL   
Sbjct: 487 DAQGSRVVVHLIDRVPENPLPFERVAGNIRDRLVREKTAQLRQSYLDQLRAR 538


>gi|261400512|ref|ZP_05986637.1| SurA/PPIASE domain protein [Neisseria lactamica ATCC 23970]
 gi|269209772|gb|EEZ76227.1| SurA/PPIASE domain protein [Neisseria lactamica ATCC 23970]
          Length = 358

 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 85/273 (31%), Gaps = 34/273 (12%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLL---DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
           ++++R  +              +   D+        + V+  ++           S A +
Sbjct: 91  EVITRRRLAQAVADAKANLPKDVQIGDEELTGQVLMQLVNQSLIVQAGKRRNIQASEAEI 150

Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266
                +     + + E +R     I           +   +S  E+    E+  K+    
Sbjct: 151 DAAAAQNPQLKHLSAEQRRELADSIIAEKVRQQAVMQNSRVSEAEVDRFIEQAQKQGITL 210

Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309
           PE         + ++     E             +   + G  F  LA +  +       
Sbjct: 211 PEGEPLRQYRAQHILIKADGENAAVGAESTIRKIYDQARNGTDFSGLARQYSQDAGAGNG 270

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG FS   +       ++ +L K G  +  +   FG+ I  ++ ++ + T      ++
Sbjct: 271 GDLGWFSDGVMV-APFEAAVHAL-KPGQVSAPVRTQFGWHIIKLNEVRDAGTP-----EE 323

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            I N +R     +K ++    L   L  G  +D
Sbjct: 324 RIRNSVRQYIFQQKAEQATAELLRDLHSGAYID 356


>gi|78485996|ref|YP_391921.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
           crunogena XCL-2]
 gi|121956485|sp|Q31F26|SURA_THICR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|78364282|gb|ABB42247.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
           crunogena XCL-2]
          Length = 451

 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 109/349 (31%), Gaps = 79/349 (22%)

Query: 13  VAKIFLVVLFV-PFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           + K+  ++  + PF  W              V  V    +  S            +  + 
Sbjct: 9   LFKLISILFILTPFFAWSAPQETLI---DRVVAVVNDNIILKSELDAEVNLAKQDLQARN 65

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
             V N E   S     K+LD ++      Q I  +G++     ++ +I           K
Sbjct: 66  IPVTNPEELAS-----KVLDKIILERLQLQRINQLGIKIADDELFSQIQEIA-------K 113

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
            ++   +    R  +++K   + + + + +  +                         R 
Sbjct: 114 QNNLTVIELRDRLNMSQKNGFESFRERIRQQMLFQKL---------------------RE 152

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           V+ +        +    +   ++ + +            R + +  DV      I +S  
Sbjct: 153 VEVL--------SKTQVTEDEVSNFIQ------------RQALVQSDVEYHLGHIMVS-- 190

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---EEQGKSLS 308
                      +  +P+ R         +++A E  Q ++ G  F Q+A    E  K+L 
Sbjct: 191 ---------LPESATPDQRDAS------KQKAQEILQKIRTGGDFSQMAVRYSEGSKALQ 235

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
              LG    + IP  +  +   +  + G+ + VI    G+ I  +   +
Sbjct: 236 GGDLGWLGIDQIP--TFFNDALNQLEIGETSDVIRSPVGFHIIQLQGKR 282


>gi|71281900|ref|YP_271172.1| peptidyl-prolyl cis-trans isomerase SurA [Colwellia psychrerythraea
           34H]
 gi|122070643|sp|Q47VK0|SURA_COLP3 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|71147640|gb|AAZ28113.1| peptidyl-prolyl cis-trans isomerase SurA [Colwellia psychrerythraea
           34H]
          Length = 433

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 63/425 (14%), Positives = 132/425 (31%), Gaps = 91/425 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V           +     L  I Q+     N        L  +++D L++ + L
Sbjct: 30  DRVAAIVN----TGVVLESEVNDLLVNIKQQAKKN-NQSLPSDKALRIQVMDKLINDSLL 84

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G++    ++   +        +++K +   F  ++  EG + ++Y ++    L
Sbjct: 85  SQMGQRMGIQISDAQLDQTLNNM----AREDKLTLAQFRQQVIDEGTSYEKYRENVRIEL 140

Query: 160 SRTDV-VGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQW 216
              +V        +  S   +D   +   E  S  V+Y  L +  +   AD S   L   
Sbjct: 141 VSGEVSRNSVRRRIFVSPQEVDNLLKVMKEQSSNNVEYH-LGHILIEFPADASQEDLAA- 198

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE-------------------- 256
                         ++  +L D  +  K    S+ +  A                     
Sbjct: 199 --------AKTRATKVVELLNDGSDFAKIAITSSGDANALKGGDLGWKNINEMPTLFSEL 250

Query: 257 -YEKNKEKYFSP-----------------------EIRTVEQLVFP-----NQKEADEAF 287
             +K K+    P                       E      ++       + ++A    
Sbjct: 251 INDKPKDTIVGPIRTGLGYSIVKVLDIRGRKVVEVEEVKASHILIKPSIILSDEKAKSLL 310

Query: 288 Q----SLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           Q     +  G+  F +LA+E      S+    LG  +     D +  +++ ++ KKG + 
Sbjct: 311 QGFLNQIDAGEATFEELAKEHSEGPTSVRGGDLGW-ADPKNYDPAFTEALATM-KKGGYH 368

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
                SFG+ I  + + +     S          Q+   +A + +      +E    L  
Sbjct: 369 KPFRSSFGWHIIKLEDRRMVDATS----------QLNENRAYQILFNRKYGMESTRWLKE 418

Query: 400 SMDEI 404
           + DE 
Sbjct: 419 TRDEA 423



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 98/308 (31%), Gaps = 40/308 (12%)

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
           ++K         L    ++       G++ S+  LDQ          +       + +  
Sbjct: 66  SDKALRIQVMDKLINDSLLSQMGQRMGIQISDAQLDQTLNNMAREDKLTLAQFRQQVIDE 125

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
                       +EKY++N R      +       +   ++I +S  E+    +  KE+ 
Sbjct: 126 GTS---------YEKYRENVR----IELVSGEVSRNSVRRRIFVSPQEVDNLLKVMKEQS 172

Query: 265 FSPEIRTVEQLVFPNQKEA---DEAFQS---------LKKGKKFIQLAEEQGKS---LSD 309
            +     +  ++     +A   D A            L  G  F ++A         L  
Sbjct: 173 SNNVEYHLGHILIEFPADASQEDLAAAKTRATKVVELLNDGSDFAKIAITSSGDANALKG 232

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG  +   +P  +L   + +   K      I    GY I  V +I+    V  +EVK 
Sbjct: 233 GDLGWKNINEMP--TLFSELINDKPKDTIVGPIRTGLGYSIVKVLDIRGRKVVEVEEVKA 290

Query: 370 D---IANQ--MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
               I     +   KA   ++    +++   A   + +E+++        +   D    D
Sbjct: 291 SHILIKPSIILSDEKAKSLLQGFLNQID---AGEATFEELAKEHSEGPTSVRGGDLGWAD 347

Query: 425 VKGKEVAA 432
            K  + A 
Sbjct: 348 PKNYDPAF 355


>gi|298384049|ref|ZP_06993610.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_14]
 gi|298263653|gb|EFI06516.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_14]
          Length = 712

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 87/726 (11%), Positives = 203/726 (27%), Gaps = 134/726 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     +  V  V    +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   +I    G    ++  ++  +  ++  + V+   +++  + +GL      +   +  
Sbjct: 61  EYTEVIKLSRGVTALNDE-QTNQVRDEVWRSYVNNKLVEKEAKALGLTVSAAEIQDILKA 119

Query: 120 -----ARSPLFHGK-DNKFSHD-----------------------------VF----VSR 140
                 +   F       F  D                              +       
Sbjct: 120 GVHPLLQQTPFRNPQTGAFDKDMLNKFLVDYAKMNESQMPAQYAEQYNNMYKYWSFIQKT 179

Query: 141 LAREGINEKEYIDHYTKMLSRT----------------DVVGMFVGGMRPSNLLL----- 179
           L +  + EK Y     K L                    ++          + ++     
Sbjct: 180 LVQSRLAEK-YQALVAKALLSNPVEAQDAFDARVNQYDLLMAAVPYSSVVDSTIVVKESE 238

Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224
                    +  + Y E+R + YI +       +   +    D + A L    + Y   +
Sbjct: 239 LKDLYNKKKEQFKQYQESRDIKYIDVQVTASAEDRAAIQQEVDEATAQLATTTDDYTS-F 297

Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267
                    Y+    ++     ++     +  + + Y              K   K  + 
Sbjct: 298 IRSVGSEAPYVDLFYNKTAFPSDVVARLDSASVGSVYGPYYNGADNTINSFKVVAKTAAA 357

Query: 268 EIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEY 319
           +     Q+          +  AD  + ++K G  F  LA++ G++   + +S   +    
Sbjct: 358 DSIEFRQIQVFAEDALKTKALADSIYTAIKGGANFADLAKKYGQTGETNWMSSAQYEGAQ 417

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTV-SFQEVKKDIANQMR 376
           I   +L     S         V++   G   VI  V+N K          VK+++     
Sbjct: 418 IDGDNL--KFISAINNTGVNEVVNLPLGQANVILQVTNKKAVKDKYKVAVVKREV----- 470

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
              + E     Y    +F+A   + +++    +     L  +D          +  +   
Sbjct: 471 -EFSKETYNRAYNDFSQFIAANPTAEKMIANAEEAGYKL--LDRRDLYSSEHTIGGVRGT 527

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           ++ L   F                   + V +    P   R L+ V   ++ +    K  
Sbjct: 528 KEALRWAFAAKPGDVSGLYECGESDHMVAVALVGVTPEGYRPLKAVQDQLRAEIVKDK-- 585

Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF----FGYDGISQV 552
                KA +++ +         D  K +  ++  + ++                  +   
Sbjct: 586 -----KAEKIMADMKAANATSLDQYKAMPGAVSDSLKLVTFAAPAYVSELRSSEPLVGAY 640

Query: 553 FSGPVEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
            S         PI+      V ++    K+          + L  M  +     ++  L 
Sbjct: 641 ASVAEMNKLSAPIKGNAGVFVLQMYGKDKLSDTFNAKDEEATLANMHAR-FASRLMNDLY 699

Query: 612 SQYSVT 617
            +  V 
Sbjct: 700 LKGKVK 705


>gi|198282817|ref|YP_002219138.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665858|ref|YP_002425014.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247338|gb|ACH82931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518071|gb|ACK78657.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 258

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 7/157 (4%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K+  I   ++Q  Y K  +     E   V  ++   + EAD+    LK G+KF  L
Sbjct: 100 EQYVKEHPIPETDIQNAYNKFVQAMGKKEF-EVRHILVKTKTEADKIMGDLKAGQKFSAL 158

Query: 300 AEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           AE+     +       LG      +     A +I +          +   FGY +  V  
Sbjct: 159 AEKYSIDKASAAHGGELGWIVPGMVV-PPFAQAIETAPIDKPV-GPVQTQFGYHVIEVQA 216

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +         +K  I  Q++  +A++ V     + +
Sbjct: 217 TRALTPPPLSAMKDRIKTQLQQQEAAKFVSNLRSQAK 253



 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/119 (10%), Positives = 38/119 (31%), Gaps = 1/119 (0%)

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
            ++A++++ +  K G+ F  + +       +      +            +Q        
Sbjct: 139 KTEADKIMGDL-KAGQKFSALAEKYSIDKASAAHGGELGWIVPGMVVPPFAQAIETAPID 197

Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
               P++    Y V +V  ++             +   + +      ++ L+SQ  + +
Sbjct: 198 KPVGPVQTQFGYHVIEVQATRALTPPPLSAMKDRIKTQLQQQEAAKFVSNLRSQAKINI 256


>gi|323964847|gb|EGB60314.1| ppic-type ppiase domain-containing protein [Escherichia coli M863]
 gi|327255033|gb|EGE66636.1| chaperone surA [Escherichia coli STEC_7v]
          Length = 428

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/391 (15%), Positives = 116/391 (29%), Gaps = 78/391 (19%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V           
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRN--------- 143

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
                                     V          +    ++  + Y A     +S+I
Sbjct: 144 ------------------------NEVRRRITILPQEVESLAQQVGNQYDASTELNLSHI 179

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           L  + E     +++  E                             +A       + G  
Sbjct: 180 LIPLPENPTSDQVNEAE----------------------------SQARAIVDQARNGAD 211

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           F +LA         ++ G      I +   +     S AKKGD    I    G+ I  V+
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 355 NIK-PSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           +++  S  +S  EV    I  +       E+ +   +++   +  G +    +   K  S
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKT--TFAAAAKEFS 329

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
            D    +  G           P     L R+
Sbjct: 330 QDPGSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|167568839|ref|ZP_02361713.1| survival protein SurA, putative [Burkholderia oklahomensis C6786]
          Length = 449

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/411 (12%), Positives = 119/411 (28%), Gaps = 69/411 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V   ++     L  ++L+ +V     
Sbjct: 39  DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPIDQ-----LRAQVLNQMVLERIQ 93

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D+  V   + R      + N    D + +R+  +G+    ++      L
Sbjct: 94  IQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDVFVRDARTEL 149

Query: 160 SRTDV---------------VGMFVGGMRPSNLLLDQAKRFY---------FENRSVDYI 195
             + +               V  ++   R  N    Q  R                +D  
Sbjct: 150 MLSKLREKEVDGKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPTSAPQADIDVA 209

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAP-----EYKRISYILFDVH 240
                 +   A  S A   +  +   +           +++P     +       L    
Sbjct: 210 QKKAEGLLQQALASGADFERLAKNNSEADDAKKGGDLGFKSPSSLPSDVVDAVSKLRPGQ 269

Query: 241 EKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF-----PNQKEADE---- 285
                + + +  E+    ++   +  S          V  ++       ++ +A +    
Sbjct: 270 VNPTLVRVPDGFEIVRLVDRRASQSVSAASPKIVQTHVRHILLRVGEGKSESQARQQLID 329

Query: 286 AFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             + ++ G  F + A    + G +     LG  S           ++ SL + G  +  +
Sbjct: 330 IRRQVEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNSL-QDGQVSNPV 387

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
              +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 388 RTEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 437



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 90/282 (31%), Gaps = 35/282 (12%)

Query: 152 IDHYTKMLSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
           ID     +    V+        +   +++D A       R      +      A      
Sbjct: 76  IDQLRAQVLNQMVLERIQIQRAKDDGIVVDNATVQATLGRLAQANGMPLDQYKARI---E 132

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
           A    W     D +       +        E + KI +S+ E+ +     +      +  
Sbjct: 133 AQGVPW-----DVFVRDARTELMLSKLREKEVDGKITVSDAEVASYIASQRGPNAGSQQD 187

Query: 271 -TVEQLVFPNQKEADEA-------------FQSLKKGKKFIQLAE---EQGKSLSDISLG 313
             +E +       A +A              Q+L  G  F +LA+   E   +     LG
Sbjct: 188 LRLEHIFVKAPTSAPQADIDVAQKKAEGLLQQALASGADFERLAKNNSEADDAKKGGDLG 247

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVK---- 368
             S   +P   + D++  L + G   P ++    G+ I  + + + S +VS    K    
Sbjct: 248 FKSPSSLP-SDVVDAVSKL-RPGQVNPTLVRVPDGFEIVRLVDRRASQSVSAASPKIVQT 305

Query: 369 --KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
             + I  ++   K+  + ++    +   +  G   ++ +R  
Sbjct: 306 HVRHILLRVGEGKSESQARQQLIDIRRQVEAGGDFEKFARTY 347


>gi|91202462|emb|CAJ72101.1| similar to peptidyl-prolyl cis-trans isomerase (survival protein
           surA precursor) [Candidatus Kuenenia stuttgartiensis]
          Length = 328

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 100/272 (36%), Gaps = 28/272 (10%)

Query: 142 AREGINEKEYIDHYTKML--SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
           AR   +E+E+  +  K+L  +  +++   +       +            + +DY     
Sbjct: 56  ARSKYSEEEFAKNIEKILEYTLEELIDRKLLVKEAQKVFGTDISMMDEVQKELDY----- 110

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR------ISYILFDVHEKEKKIEISNDEL 253
                 A  +   L++++E  +     P  ++      I            K+++    L
Sbjct: 111 --FLKGAVENVGSLSKFYEIAESQGINPIERKTELKEDIMIDKIIKENVNNKVKVPPKLL 168

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFP------NQKE----ADEAFQSLKKGKKFIQLAEEQ 303
           +  Y +N +++   +   +  ++        ++ +    A++    L  G+ F  +A   
Sbjct: 169 RRYYMENMDEFCQKKEIKLRHIMIKFSTHDNDKAKTYAFAEKIMTLLSTGEDFSSVARSY 228

Query: 304 GKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
            +  +    G +S + I      L D + SL K  +++ +     GY I  V  I+P   
Sbjct: 229 SEGPNAEKGGEWSFDEIQGLRKELRDVVNSL-KDNEYSKITESPVGYHIFKVELIRPEVV 287

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             F++V+ +I  ++   +     K+    L E
Sbjct: 288 KKFEDVQDEIYKKLYREEIGRLKKKYILDLRE 319


>gi|322834453|ref|YP_004214480.1| SurA domain protein [Rahnella sp. Y9602]
 gi|321169654|gb|ADW75353.1| SurA domain protein [Rahnella sp. Y9602]
          Length = 431

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 129/437 (29%), Gaps = 84/437 (19%)

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
               L  +ILD L+      Q    +G+      V   IA       + N  S D   SR
Sbjct: 62  DDATLRHQILDRLIMDQIQLQMATRMGITPTDQDVDKAIAGI----AQQNNISVDQLRSR 117

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           LA +G+N   Y     K +         +  +R S +            R V  +     
Sbjct: 118 LAYDGMNYSTYRTQIRKEM--------IISEVRNSEV-----------RRRVTILPQEVD 158

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
            +       N    ++               +S+IL  + E   + ++ + E        
Sbjct: 159 QLAKQVAAQNGSGAEF--------------NLSHILLPLPENPTQDQVDSAE-------- 196

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
                               + A +    L  G  F +LA         +  G+     +
Sbjct: 197 --------------------QLAKKIVADLNNGADFGKLAITYSADSQALKGGNMGWGKL 236

Query: 321 PD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKKD---IANQM 375
            +  SL     S A+KG     I    G+ I  V++I+    TVS  EV      +   +
Sbjct: 237 QELPSLFAQALSTAQKGQVIGPIRSGVGFHILKVNDIRGDNKTVSVTEVHARHILLKPSV 296

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
            +T A  + K   +++   +  G      +   K +S D    +  G           P 
Sbjct: 297 VMTDAQARAK--LEQVAADIKSGK--ATFADEAKQLSQDPGSANQGGDLGWASPDMYDPA 352

Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTV 493
               L  +        K   ++ P  S     + + I  R  D+          +     
Sbjct: 353 FRDALMNL--------KKGEISAPVHSSFGWHLIQLIDTRQVDKTDAAQKERAYRMLFNR 404

Query: 494 KTAEEVSSKANQLVLEY 510
           K AEE  +   +   E 
Sbjct: 405 KFAEEAQTWMQEQRAEA 421


>gi|167561603|ref|ZP_02354519.1| survival protein SurA, putative [Burkholderia oklahomensis EO147]
          Length = 452

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/411 (12%), Positives = 119/411 (28%), Gaps = 69/411 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V   ++     L  ++L+ +V     
Sbjct: 42  DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPIDQ-----LRAQVLNQMVLERIQ 96

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D+  V   + R      + N    D + +R+  +G+    ++      L
Sbjct: 97  IQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDVFVRDARTEL 152

Query: 160 SRTDV---------------VGMFVGGMRPSNLLLDQAKRFY---------FENRSVDYI 195
             + +               V  ++   R  N    Q  R                +D  
Sbjct: 153 MLSKLREKEVDGKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPTSAPQADIDVA 212

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAP-----EYKRISYILFDVH 240
                 +   A  S A   +  +   +           +++P     +       L    
Sbjct: 213 QKKAEGLLQQALASGADFERLAKNNSEADDAKKGGDLGFKSPSSLPSDVVDAVSKLRPGQ 272

Query: 241 EKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF-----PNQKEADE---- 285
                + + +  E+    ++   +  S          V  ++       ++ +A +    
Sbjct: 273 VNPTLVRVPDGFEIVRLVDRRASQSVSAASPKIVQTHVRHILLRVGEGKSESQARQQLID 332

Query: 286 AFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             + ++ G  F + A    + G +     LG  S           ++ SL + G  +  +
Sbjct: 333 IRRQVEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNSL-QDGQVSNPV 390

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
              +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 391 RTEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 440



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 90/282 (31%), Gaps = 35/282 (12%)

Query: 152 IDHYTKMLSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
           ID     +    V+        +   +++D A       R      +      A      
Sbjct: 79  IDQLRAQVLNQMVLERIQIQRAKDDGIVVDNATVQATLGRLAQANGMPLDQYKARI---E 135

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
           A    W     D +       +        E + KI +S+ E+ +     +      +  
Sbjct: 136 AQGVPW-----DVFVRDARTELMLSKLREKEVDGKITVSDAEVASYIASQRGPNAGSQQD 190

Query: 271 -TVEQLVFPNQKEADEA-------------FQSLKKGKKFIQLAE---EQGKSLSDISLG 313
             +E +       A +A              Q+L  G  F +LA+   E   +     LG
Sbjct: 191 LRLEHIFVKAPTSAPQADIDVAQKKAEGLLQQALASGADFERLAKNNSEADDAKKGGDLG 250

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVK---- 368
             S   +P   + D++  L + G   P ++    G+ I  + + + S +VS    K    
Sbjct: 251 FKSPSSLP-SDVVDAVSKL-RPGQVNPTLVRVPDGFEIVRLVDRRASQSVSAASPKIVQT 308

Query: 369 --KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
             + I  ++   K+  + ++    +   +  G   ++ +R  
Sbjct: 309 HVRHILLRVGEGKSESQARQQLIDIRRQVEAGGDFEKFARTY 350


>gi|268315855|ref|YP_003289574.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
 gi|262333389|gb|ACY47186.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
          Length = 552

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 8/162 (4%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            + E    +  D L+A Y+ ++E +  P  R V +++ P + EA      L     F +L
Sbjct: 375 QQVESGAAVPEDTLRAFYKAHREDFRMPARRAVWEILVPTEAEAQRIRTLLTA-TPFEEL 433

Query: 300 AE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A       G + +   LG  ++  +   +   ++F+ A++G+    +  + GYV+  V  
Sbjct: 434 ARHYSRRPGAAATGGYLGFVAEAQLG--AAGKAVFA-AREGEVLGPLRIADGYVLLKVGA 490

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
            +P   ++F+E +  I  Q+R      + +E    L    A 
Sbjct: 491 EQPERPMTFEEARPLIERQLRPFFVRRRWQEHLAELAARHAD 532



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/399 (15%), Positives = 121/399 (30%), Gaps = 75/399 (18%)

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
             + ++  L R G  +        ++     +    V         LD+   +  E R+V
Sbjct: 32  FREAYLDYLLRTGQTDS---PRLRRLFLEQMIREALVA-YEARRQGLDRTPAYEEEARAV 87

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
           +  +L               +  +             +R+ Y           + +   E
Sbjct: 88  ETKLL---------------VEAY------------ARRVLY---------DTVRVREAE 111

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLS 308
           L   + +               L  P +  A+  +  L+ G  F +LA     +   + S
Sbjct: 112 LAEAFVRINT------EVRARHLWAPTRAAAESLYARLQAGASFEELAAGVFRDTALARS 165

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI--KPSFTVS-FQ 365
              LG FS + + D +  D  F L + G+ +  +  ++GY I  V++   KP  T + F 
Sbjct: 166 GGDLGWFSFDEM-DPAFEDVAFRL-RPGEISSPVRTAYGYSIIQVTDRFTKPILTETEFA 223

Query: 366 EVKKDIANQMR---ITKASEKVKEDYKRLEEFLALGTSM----DEISRREKIVSIDLPLV 418
           + +  +   +R      A E          +      ++    D I+ R     ++    
Sbjct: 224 QKRPLLERYLRYRKQQAAREACARSLADSLQIRFHEATLRRLYDRIAGRVTQEEMEGTTE 283

Query: 419 DF-------AGKDVKGKEVAAIPYKEQL--LFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
           D+        G   +        ++EQ     R   +    S +       G  +   + 
Sbjct: 284 DWLQEPLLTFGPAAERVTWTVADFREQARRTSRAQREAAARSPEALEEFARGLVVRHVLA 343

Query: 470 ESIPA----RDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
           E   A    R     +   +    W      ++V S A 
Sbjct: 344 ERARAAGLHRSPAFAQARQEALDRWLYRYVRQQVESGAA 382


>gi|332534336|ref|ZP_08410179.1| survival protein SurA precursor [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036246|gb|EGI72719.1| survival protein SurA precursor [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 431

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 114/378 (30%), Gaps = 85/378 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  V +  +  S       +      ++       +  +   L  + ++ LV+ A +
Sbjct: 28  DKVIGVVNQGVILKSEVDTIIDRVKKQAQEQ-----GQQLPKDETLRVQAVERLVNQALM 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E +GL+    ++   +A       +      D+    +   G + + Y +   K +
Sbjct: 83  MQMAERMGLQISDSQLDQTLANMA---KEQGGTIADL-RRTIEGSGESFQAYREEIRKEI 138

Query: 160 SRTDVVGMFVG-GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +   V    V   +  S   +D   +                                  
Sbjct: 139 TTQQVTRASVDRRIYISEQEVDNLLKIME------------------------------- 167

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                 ++ E   I +IL D+       EI++ + +                        
Sbjct: 168 ---TQGQSAEEYDIGHILIDIPNDATADEIADAKTR------------------------ 200

Query: 279 NQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
               AD+  + L  G++F ++A       K+L    LG      +P +  A+++    KK
Sbjct: 201 ----ADKVIELLNDGQEFKRIAISSSSGSKALEGGQLGYMGINEMPSL-FAEAVKG-QKK 254

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKR 390
           G     +    G+ I  V +++    V   EV+     I     +   KA   +    K 
Sbjct: 255 GAIVGPLRSGAGFHIIKVQDVRGLQVVETTEVRSRHILIKPSIILSEEKARSMLAGFAK- 313

Query: 391 LEEFLALGTSMDEISRRE 408
             +  A      E+++  
Sbjct: 314 --DLRAGTADFGELAKEY 329


>gi|330996747|ref|ZP_08320619.1| hypothetical protein HMPREF9442_01706 [Paraprevotella xylaniphila
           YIT 11841]
 gi|329572469|gb|EGG54120.1| hypothetical protein HMPREF9442_01706 [Paraprevotella xylaniphila
           YIT 11841]
          Length = 716

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/472 (12%), Positives = 144/472 (30%), Gaps = 85/472 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56
           L+ IR  ++  +  I + V    F+     +A+ S+  +S      V  +  +++    F
Sbjct: 4   LQKIR--AKGPLLVIVIGVALFAFI---AEEAMRSIQSASNESKQQVGEIYGERISVHEF 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            N   +   ++    G    +++ +   L  ++ +  V+   ++   E++GL      + 
Sbjct: 59  QNLVDEYAEVVKFTSGNSALNDQ-QLTQLRDQVWNTYVNNKLIEHEAEELGLTVTDAEIQ 117

Query: 117 GEI--------ARSPLFHGKDNKFSHDVFVSRLAR-EGIN------EKEYIDHY------ 155
             I         ++P  + +  +F  +V    L   EG+         EY+D+Y      
Sbjct: 118 SIISEGNSPILMQTPFRNEQTGRFDANVLKKFLTDYEGMKTKSEQMPAEYMDYYNSLYKF 177

Query: 156 --------TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIA 206
                    +         +    M  + ++   A         +    +    +     
Sbjct: 178 WMFIEKTLRQESLAQKYQVLLGKAMLGNKIIDKAAFEARANESDIIMAAVPYSTINDKDI 237

Query: 207 DPSNAVLTQWFEKYKDNYR-APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
               + L   + + K+ ++   E + I +I   V          + ++            
Sbjct: 238 KVEESDLKAKYNELKERFKQTAESRDIKFIDVQVKASAADKAALDKDM------------ 285

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
                              E   +L  G    ++  E G +++   L   SK   P+  +
Sbjct: 286 ------------------AETATALAAGGDIAKIVRESGSTINYSPL-PVSKNIFPN-DI 325

Query: 326 ADSIFSLAKKGDFTPV--IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           A  + S+A  G         G     I  V N   +           +            
Sbjct: 326 ASQLDSMA-VGQMKAPYYYAGDNTMNIIKVINKISAPD------SIQLRQIQVAGADMNA 378

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV--DFAGKDVKGKEVAAI 433
           +++    +   L  G + D I+++         +   ++ G  + G  +  I
Sbjct: 379 IQKTADSIMTALHNGVAFDSIAKKYNQTGEKTWITSRNYEGAPLDGDNLKFI 430


>gi|225154955|ref|ZP_03723452.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae
           bacterium TAV2]
 gi|224804314|gb|EEG22540.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae
           bacterium TAV2]
          Length = 332

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 79/216 (36%), Gaps = 24/216 (11%)

Query: 210 NAVLTQWFEKYKD---NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           N  L Q ++++      +       +         +      S  +LQA YE N+    +
Sbjct: 106 NEALAQKWDQHPAFTAQFEKLRENALIESYLQSVSQPPADFPSEADLQAVYEANRAALTA 165

Query: 267 PEIRTVEQLVFPNQKEADEAFQS-------------LKKGKKFIQLAE----EQGKSLSD 309
           P    + Q+     + AD A Q               +KG  F  LA     E+  + + 
Sbjct: 166 PRQVRLAQIYIAAPRSADSATQDEARARLDDVKKKLAQKGADFAALARVESDEKRSAANG 225

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG  +        + D++ +LA  G     +    G+ I     ++ +  ++  EV+ 
Sbjct: 226 GELGWLTDGQF-RPEILDTLKNLA-AGQVGEPLRLDDGWHILKALEVREARPLTLDEVRS 283

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
            +A ++R  +A    +    RL E      +++E++
Sbjct: 284 QLAQRLRAERAQANRQTHLARLLEK--NPVTINELA 317



 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 47/143 (32%), Gaps = 11/143 (7%)

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
                A+     +A  ++ +  K+L +  A   ++  +   EK  + +   + +      
Sbjct: 177 AAPRSADSATQDEARARLDDVKKKLAQKGADFAALARVESDEKRSAANGGELGWLTDGQF 236

Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
             E+                         + L DG +  ++  E   AR   L+EV + +
Sbjct: 237 RPEILDTLKNLAA----------GQVGEPLRLDDG-WHILKALEVREARPLTLDEVRSQL 285

Query: 487 KKDWKTVKTAEEVSSKANQLVLE 509
            +  +  +      +   +L+ +
Sbjct: 286 AQRLRAERAQANRQTHLARLLEK 308


>gi|161830191|ref|YP_001595995.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
           burnetii RSA 331]
 gi|161762058|gb|ABX77700.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
           burnetii RSA 331]
          Length = 321

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 106/352 (30%), Gaps = 80/352 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +  S   ++         Q+                K++LD L+     
Sbjct: 38  DQIVAVVNDEIITQSELNHALTAAKQQFMQR-----QISLPDQKTFKKQVLDQLIYQKLQ 92

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +   ++  +  +   +AR      + N  S      +L +EGI+ KE+     K L
Sbjct: 93  LQVAKHNQIKVTNNEINAAVARI----SQANHLSQTALKQKLTQEGISYKEFRSQLQKQL 148

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             + +                                     +      + + +  + ++
Sbjct: 149 IISKLQHQ---------------------------------ALQDTISINKSDIAAFQKQ 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +     + EY  I+ IL  +     + +I++                             
Sbjct: 176 HAGQIASKEY-HIATILIPLPASATQAQINHA---------------------------- 206

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           + +A    + L+KG  F    +          LG  S + +P V    ++  + K  + T
Sbjct: 207 KGKAALILKQLQKGSSFETAMKMH---PGSADLGWRSAKELPQV-FVKTVLKM-KPNEVT 261

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             I    G+ I  + + +   TVS     + I   +   K  + +++   +L
Sbjct: 262 GPIQAPNGFHIIKLLDKEAKNTVS----DQQIQRIVYQQKVEKALQKWLTQL 309


>gi|76810003|ref|YP_332285.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1710b]
 gi|167718164|ref|ZP_02401400.1| putative survival protein SurA [Burkholderia pseudomallei DM98]
 gi|167737195|ref|ZP_02409969.1| putative survival protein SurA [Burkholderia pseudomallei 14]
 gi|167822803|ref|ZP_02454274.1| putative survival protein SurA [Burkholderia pseudomallei 9]
 gi|167844378|ref|ZP_02469886.1| putative survival protein SurA [Burkholderia pseudomallei B7210]
 gi|167901377|ref|ZP_02488582.1| putative survival protein SurA [Burkholderia pseudomallei NCTC
           13177]
 gi|167909606|ref|ZP_02496697.1| putative survival protein SurA [Burkholderia pseudomallei 112]
 gi|167917621|ref|ZP_02504712.1| putative survival protein SurA [Burkholderia pseudomallei BCC215]
 gi|226196777|ref|ZP_03792357.1| putative chaperone surA [Burkholderia pseudomallei Pakistan 9]
 gi|242314929|ref|ZP_04813945.1| putative chaperone surA [Burkholderia pseudomallei 1106b]
 gi|254181756|ref|ZP_04888353.1| putative survival protein SurA [Burkholderia pseudomallei 1655]
 gi|254196558|ref|ZP_04902982.1| putative survival protein SurA [Burkholderia pseudomallei S13]
 gi|254296203|ref|ZP_04963660.1| putative survival protein SurA [Burkholderia pseudomallei 406e]
 gi|122070636|sp|Q3JVW8|SURA_BURP1 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|76579456|gb|ABA48931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1710b]
 gi|157805631|gb|EDO82801.1| putative survival protein SurA [Burkholderia pseudomallei 406e]
 gi|169653301|gb|EDS85994.1| putative survival protein SurA [Burkholderia pseudomallei S13]
 gi|184212294|gb|EDU09337.1| putative survival protein SurA [Burkholderia pseudomallei 1655]
 gi|225931308|gb|EEH27315.1| putative chaperone surA [Burkholderia pseudomallei Pakistan 9]
 gi|242138168|gb|EES24570.1| putative chaperone surA [Burkholderia pseudomallei 1106b]
          Length = 448

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 39  DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D+  V   + R      + N    D + +R+  +G+    ++      L
Sbjct: 94  VQRAKDDGIVVDNATVQATLGRL----AQANGMQLDQYKARIEAQGVPWDLFVRDARTEL 149

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211
             + +    V   +  S+  +               ++  +++I +        AD   A
Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAPQADIDVA 209

Query: 212 VLTQ---------------WFEKYKDN-----------YRAPEYKRISYILFDVHEKEKK 245
                                 K +             +++P       +      +  +
Sbjct: 210 QKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPASLPSDVVDAVSKLRPGE 269

Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286
           +  +   +   +E          +N           V  ++       ++ +A +     
Sbjct: 270 VNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 330 RRQIESGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNTL-QDGQVSNPVR 387

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436


>gi|255007876|ref|ZP_05280002.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
 gi|313145584|ref|ZP_07807777.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
 gi|313134351|gb|EFR51711.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
          Length = 712

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 79/637 (12%), Positives = 189/637 (29%), Gaps = 89/637 (13%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     S  V  V  + +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGETLSAQDYQNMVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   +I    G    ++  ++  +  ++  + V+   +++  + +G+      +   I  
Sbjct: 61  EYTEVIKFSSGMSSLNDE-QTNQVKDEVWRSYVNNKLIEKEAKKLGITVSKAEIQSIINE 119

Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRLAR---EGIN--EKEYIDHYTKMLSRTDVVGMF 168
                 +   F       F  D+    L+            +Y+++Y  M     +    
Sbjct: 120 GVNPLLQQTPFRNPQTGAFDKDMLKKFLSDYSKMDKTKMPSQYVEYYEGM---HKLWSFV 176

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
              +  S L                  ++         +  +A     F+   +      
Sbjct: 177 EKTLIQSRLAEKYQ------------ALVTKALFSNPVEAQDA-----FDARVN------ 213

Query: 229 YKRISYILFDVHEKEKK-IEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKEADEA 286
              +              I +   EL+  Y K KE++    E R ++ +       A++ 
Sbjct: 214 QSDVLLAAVPYSSIVDSTITVKESELKDLYNKKKEQFKQYVETRNIKYIDVQVTASAEDK 273

Query: 287 FQSLKKGKKFI-QLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIFSL---AKKGDF 338
               ++   +  QLA   G   + I        Y+       +    + +    A  G  
Sbjct: 274 AAIQQEVTDYTNQLATANGDYTTFIRSTGSEYPYVDLYYTKRAFPSDVVARMDSASVGQV 333

Query: 339 TPVIHGSFGYVI--AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
               + +    I    V +   +       V+           A  KV      +   + 
Sbjct: 334 YGPYYNAGDNTINSFKVLSKVAAA----DSVQFRQIQVYAEDAAKTKV--LADSIYTAIK 387

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
            G     ++++             +          A    + L F     +  +++   V
Sbjct: 388 GGADFTALAKKYG-------QTGESNWISSANYENAQIDGDNLKFITTINNLGVNELSNV 440

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
           AL  G+ + +Q+ +    +D         V    + V  ++E  +KA     ++      
Sbjct: 441 ALGQGNII-LQVTDKKAVKD------KYKVAVIKRAVDFSKETYNKAYNDFSQFIAANPT 493

Query: 517 FRDIGK---NLGASLLTTNQINRMDNENKFFGYDGISQV----FSGPVEMV-KCFPIENG 568
              +       G  LL  N +    +E+   G  G  +     F+     V   +     
Sbjct: 494 VEKMAANAEEAGYKLLERNDL--YSSEHGIGGIRGTKEALKWTFAAKPGEVSGLYECGES 551

Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605
              +V  + N     ++E  + ++ +   +  +++  
Sbjct: 552 DRMLVVGLVNV----IEEGYRPLAQVQDQLRAEIIRD 584



 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 112/369 (30%), Gaps = 28/369 (7%)

Query: 262 EKYFSPEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLG 313
            K  + +     Q+    +  A      D  + ++K G  F  LA++ G++   + IS  
Sbjct: 352 SKVAAADSVQFRQIQVYAEDAAKTKVLADSIYTAIKGGADFTALAKKYGQTGESNWISSA 411

Query: 314 SFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           ++    I   ++    +I +L    + + V  G  G +I  V++ K         VK   
Sbjct: 412 NYENAQIDGDNLKFITTINNLG-VNELSNVALGQ-GNIILQVTDKKA--------VKDKY 461

Query: 372 ANQM---RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
              +    +  + E   + Y    +F+A   ++++++   +     L   +       G 
Sbjct: 462 KVAVIKRAVDFSKETYNKAYNDFSQFIAANPTVEKMAANAEEAGYKLLERNDLYSSEHG- 520

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
            +  I   ++ L   F                   + V +   I    R L +V   ++ 
Sbjct: 521 -IGGIRGTKEALKWTFAAKPGEVSGLYECGESDRMLVVGLVNVIEEGYRPLAQVQDQLRA 579

Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548
           +    K AE++ +           + K+       +  S+                    
Sbjct: 580 EIIRDKKAEKIMADMKAANATSFDQYKSM---ANAVSDSVKHVTFAAPAYVAALRSSEPL 636

Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
           +    S         PI+      V +V            K      + M+  L    + 
Sbjct: 637 VGAYASVADINKLSAPIKGNGGVFVLQVYAKDKLNETFDAKAEEVTLENMHARLAARFMN 696

Query: 609 YLKSQYSVT 617
            L  +  V 
Sbjct: 697 DLYLKGDVK 705


>gi|215919309|ref|NP_820955.2| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
           burnetii RSA 493]
 gi|206584194|gb|AAO91469.2| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii RSA 493]
          Length = 321

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 106/352 (30%), Gaps = 80/352 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +  S   ++         Q+                K++LD L+     
Sbjct: 38  DQIVAVVNDEIITQSELNHALTAAKQQFMQR-----QISLPDQKTFKKQVLDQLIYQKLQ 92

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +   ++  +  +   +AR      + N  S      +L +EGI+ KE+     K L
Sbjct: 93  LQVAKHNQIKVTNNEINAAVARI----SQANHLSQTALKQKLTQEGISYKEFRSQLQKQL 148

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             + +                                     +      + + +  + ++
Sbjct: 149 IISKLQHQ---------------------------------ALQDTISINKSDIAAFQKQ 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +     + EY  I+ IL  +     + +I++                             
Sbjct: 176 HAGQIASKEY-HIATILIPLPASATQAQINHA---------------------------- 206

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           + +A    + L+KG  F    +          LG  S + +P V    ++  + K  + T
Sbjct: 207 KGKAALVLKQLQKGSSFETAMKMH---PGSADLGWRSAKELPQV-FVKTVLKM-KPNEVT 261

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             I    G+ I  + + +   TVS     + I   +   K  + +++   +L
Sbjct: 262 GPIQAPNGFHIIKLLDKEAKNTVS----DQQIQRIVYQQKVEKALQKWLTQL 309


>gi|88704591|ref|ZP_01102304.1| Chaperone surA [Congregibacter litoralis KT71]
 gi|88700912|gb|EAQ98018.1| Chaperone surA [Congregibacter litoralis KT71]
          Length = 400

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/388 (12%), Positives = 117/388 (30%), Gaps = 57/388 (14%)

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           +  ++ +  ++Q I           V + +  LD L+      Q  +  G+     ++  
Sbjct: 17  SELRERMAAVNQNIAAQGAEAPPEDVLIRE-TLDRLILENIQIQMGQRFGVRISDAQLNQ 75

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP-SN 176
            + R        N  + + F   L +EG +  E  ++  + +    V    V  +   S+
Sbjct: 76  AMGRIAA----QNGLTQEQFAVLLEQEGRSYMEIRENIEREMIIQRVQQGNVNQLIEISD 131

Query: 177 LLLDQAKRFYFENRSVD-YIVLNNRHVPAIADPSNAVLTQ---WFEKYKDNYRAPEYKRI 232
             ++         + V     + +  +P  +D S+A + +   + E   +  R  E    
Sbjct: 132 QEIENYLSTEEGQKLVQPEYRIIHALLPISSDTSDAEIEKNRTFSEGLVERIRDGESFEA 191

Query: 233 SYILFDVHEKEKKIEI---SNDELQAEYEKNKEKYFSPE--------------------- 268
                         ++      +L + +++        E                     
Sbjct: 192 VMTSVPQEYAFTGGDLGWRKLADLPSLFQEVAPTLSRGETADVFQSPSGLHIVTMADQRG 251

Query: 269 -------IRTVEQLVFP---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---- 308
                     V  ++            +  A E  + ++ G+ F  LA E  + +     
Sbjct: 252 GGDMTINQTKVRHILIEPSEILTDDQARDLAAELRERVEAGEDFGDLAREYSEDIGSAAE 311

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
              LG  S   +      + + S  + G  +P +   FG+ I  V   +          K
Sbjct: 312 GGDLGWTSPGQMV-PEFENMMAS-TEVGVVSPPVRSQFGWHILEVLERREKDITE-DMRK 368

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLA 396
             +   +   K  E++    +++ +   
Sbjct: 369 AQVREFLHGRKYQEELDAWLRKIRDEAF 396


>gi|209515375|ref|ZP_03264241.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
 gi|209504095|gb|EEA04085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
          Length = 295

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 9/160 (5%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQ 298
            +     + ++ +L AEY+K K      E R    +V  ++ EA      L +  K F +
Sbjct: 133 KDFFASHKPTDAQLNAEYDKVKAAAAGNEYR-ARHIVVKSEDEAKAIIAKLNQDPKAFSE 191

Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA               LG F    +     A ++  L K       I   FGY +  V 
Sbjct: 192 LASADSLDPVSKAKGGDLGWFDPARMV-PEFASAVQKLGKGQISQEPIKSQFGYHVIVVD 250

Query: 355 NI--KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +I  K      F++VK  +A      +  + + +   + +
Sbjct: 251 DIRSKADSVPPFEQVKDSLAAHFEQEELLKALSDMKAQAK 290


>gi|299067923|emb|CBJ39137.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Ralstonia
           solanacearum CMR15]
          Length = 496

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/414 (12%), Positives = 109/414 (26%), Gaps = 77/414 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +     ++        +  +     N +      L  ++L+ L+     
Sbjct: 88  DEVVAVVNTDIITRRELLDRADLVERTLQSQ-----NRQIPARPDLLGEVLEQLILERVQ 142

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G+      V   +        + N  S     S+LA+ G+   +Y +   + +
Sbjct: 143 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVSQLKSKLAQSGLAYDKYREDLRQEI 198

Query: 160 SR------------------------TDVVGMFVGGMR---PSNLLLDQAKRFYFENRSV 192
                                             GG      + +L+  A+    E ++ 
Sbjct: 199 LLARLRDREVDSKVQVFDGEIDNFLAQQGGSAASGGALEYNVAQILVPVAEDASAEQKAA 258

Query: 193 ----------------DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
                           D+  L      A        L       +   R P     + + 
Sbjct: 259 ARGKAESLLKQVQGGADFAKLARDSSGAPEAAQGGEL-----GLRPIGRLPAQFANAVVD 313

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP-----EIRTVEQLVFPNQK--EADEAFQS 289
               +   ++  S          +K    +          V  ++        AD+A + 
Sbjct: 314 LKPGQVVDQVIESPAGFHVLKLVDKRAQGTAVTAKVAQTQVRHILIKTGPTMSADDARRQ 373

Query: 290 LKK-------GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           L         G  F   A    +  S      LG  S   +       ++  L K G+ +
Sbjct: 374 LAGLRDRIVHGYDFGDAARRYSQDNSASAGGELGWVSPGQLV-PEFEQAM-GLLKPGEVS 431

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +   FG  +  V   + +        +    + +R  K     ++  ++L +
Sbjct: 432 QPVQSQFGLHLIQVEGRREAEV-PVDRQRDYARSVIREQKVQAAYEDWLRQLRD 484


>gi|167814327|ref|ZP_02446007.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 91]
 gi|122070637|sp|Q63X78|SURA_BURPS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 448

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 39  DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D+  V   + R      + N    D + +R+  +G+    ++      L
Sbjct: 94  VQRAKDDGIVVDNATVQATLGRL----AQANGMQLDQYKARIEAQGVPWDLFVRDARTEL 149

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211
             + +    V   +  S+  +               ++  +++I +        AD   A
Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAPQADIDVA 209

Query: 212 VLTQ---------------WFEKYKDN-----------YRAPEYKRISYILFDVHEKEKK 245
                                 K +             +++P       +      +  +
Sbjct: 210 QKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPASLPSDVVDAVSKLRPGE 269

Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286
           +  +   +   +E          +N           V  ++       ++ +A +     
Sbjct: 270 VNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 330 RRQIESGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNTL-QDGQVSNPVR 387

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436


>gi|68304918|gb|AAY89929.1| predicted survival protein surA [uncultured bacterium BAC13K9BAC]
          Length = 441

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/415 (12%), Positives = 122/415 (29%), Gaps = 58/415 (13%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           ++ + FL       +        +  V    V  S   N               +  + R
Sbjct: 42  LIILFFLTI---SNMAHAMEDKIIAVVNDNVVLKSELNNKLTTI---------NLEGTSR 89

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
             +  L ++ILD L+  + L+Q    +G+      +   I        +D   +      
Sbjct: 90  LEAAKLKREILDQLIEESLLEQAANRLGIYISDIDLQNRIKLI----AQDKNLTVLQLKE 145

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSV------ 192
            +  + I+   Y+ +  K +   ++    F      S   +    +     + +      
Sbjct: 146 AVESQNIDYLRYLKNLRKRIQIEELFRIQFTSRAYVSEEEIQSYLKTNDSLKIINNIMTV 205

Query: 193 -DYIVLNNRHVPAIADPS-------NAVLTQWFEKYKD-NYRAPEYKRISYILFDVHEKE 243
            +Y++ +  +   I              L   + +Y +   +      I +        +
Sbjct: 206 REYLIEDENNKLDITKVDILVRNIKTNGLEDTYNRYPNIKIKINNLSEIPFTKL-PDIYQ 264

Query: 244 KKIEISND----ELQAE-----YEKNKEKYFSPEIRTVEQLVFPNQ-----KEADEAFQS 289
             + I +     +L        + +        E   V  ++         K   E F  
Sbjct: 265 NNLNILDQNSYTDLFKTGKGYVFLEVVSSSMYSEEYKVSHILLKTNPMENLKSLKERFYK 324

Query: 290 LK----KGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           +K    K   F   A++        +   SLG  +K+ +        I S  K G  +  
Sbjct: 325 IKRDATKENNFSDYAQKYSLDKASAIKGGSLGWINKKLVV-PEFGR-IMSNMKIGGISEP 382

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
               FG+ I  + + +    +S    +  +   ++  K     +E   +L++   
Sbjct: 383 FKTQFGWHILQLEDKR-IKNISNDVARNQVVAILKERKVKVAKREWLAKLKDQAY 436


>gi|327398211|ref|YP_004339080.1| SurA domain-containing protein [Hippea maritima DSM 10411]
 gi|327180840|gb|AEA33021.1| SurA domain protein [Hippea maritima DSM 10411]
          Length = 287

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/351 (10%), Positives = 95/351 (27%), Gaps = 107/351 (30%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           + +V  + +      N                        V     +L+ ++    + Q+
Sbjct: 31  IATVNGKPITTYELQN------------------LAGFYRVNNLNTLLNEVIDDYLIRQY 72

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
             ++G+      V   I +                        ++E E++    +     
Sbjct: 73  ANNMGIIVSDEDVEKYIQQMAE------------------ANNLSEDEFLAKLKE----- 109

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH--VPAIADPSNAVLTQWFEKY 220
                       SN+ L+    +Y E   +    +        +    ++  +  ++  +
Sbjct: 110 ------------SNIDLN----YYKEGIKLRLYRIKFARRVFLSSIKITDKDIENYYNLH 153

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           KD ++      +                                       +  +   + 
Sbjct: 154 KDKFKGKSKVLV---------------------------------------LSIITLGDL 174

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           + A + +  LKKGK F  L  +   +               +  L   + SL K   +T 
Sbjct: 175 ETAKKVYSLLKKGKSFEDLLNKYSTTKESTRKVPIE---TLNPYLQKKLLSL-KPNQYTD 230

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +I  +  + I  +   +       + +K  I N +   + + K+K   K +
Sbjct: 231 IIQSAGKFYIVKLLGTEEG-----ESIKDTIRNTLIDQQITAKLKSWLKMI 276


>gi|154706423|ref|YP_001425383.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway
           5J108-111]
 gi|154355709|gb|ABS77171.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway
           5J108-111]
          Length = 321

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 106/352 (30%), Gaps = 80/352 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +  S   ++         Q+                K++LD L+     
Sbjct: 38  DQIVAVVNDEIITQSELNHALTAAKQQFMQR-----QISLPDQKTFKKQVLDQLIYQKLQ 92

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +   ++  +  +   +AR      + N  S      +L +EGI+ KE+     K L
Sbjct: 93  LQVAKHNQIKVTNNEINAAVARI----SQANHLSQTALKQKLTQEGISYKEFRSQLQKQL 148

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             + +                                     +      + + +  + ++
Sbjct: 149 IISKLQHQ---------------------------------ALQDTISINKSDIAAFQKQ 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +     + EY  I+ IL  +     + +I++                             
Sbjct: 176 HAGQIASTEY-HIATILIPLPASATQAQINHA---------------------------- 206

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           + +A    + L+KG  F    +          LG  S + +P V    ++  + K  + T
Sbjct: 207 KGKAALVLKQLQKGSSFETAMKMH---PGSADLGWRSAKELPQV-FVKTVLKM-KPNEVT 261

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             I    G+ I  + + +   TVS     + I   +   K  + +++   +L
Sbjct: 262 GPIQAPNGFHIIKLLDKEAKNTVS----DQQIQRIVYQQKVEKALQKWLTQL 309


>gi|303257435|ref|ZP_07343448.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales
           bacterium 1_1_47]
 gi|302859792|gb|EFL82870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales
           bacterium 1_1_47]
          Length = 259

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 69/176 (39%), Gaps = 5/176 (2%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E +   Y    V +      +++ +L+  YE+ K++Y  P    V  ++   ++EA +  
Sbjct: 79  ERQTEIYSAELVRKNAAAHPLTDADLKKTYEEVKKQY-DPNEIKVRHILVKTEQEAKDII 137

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           +SL  G  F  +A+E+       + G      +   I     A++  +L K        H
Sbjct: 138 KSLNAGGDFATIAKEKSLDQGTAAQGGEIPFTNIRRIAIPGFAETAMALNKGALLPVPFH 197

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
            + GY +  + + +     SF  +K  I N     +A + + +  K  +   A   
Sbjct: 198 SALGYHVIQLQDKREVPLPSFDALKPQIQNLAAQRQAQQYMADLMKNAKIAEAAPA 253


>gi|163790772|ref|ZP_02185198.1| peptidylprolyl isomerase [Carnobacterium sp. AT7]
 gi|159873952|gb|EDP68030.1| peptidylprolyl isomerase [Carnobacterium sp. AT7]
          Length = 339

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 62/165 (37%), Gaps = 14/165 (8%)

Query: 226 APEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
            PE  +  I   L      + K + + +E+Q  Y+                ++  ++ +A
Sbjct: 100 TPEKYKDTIRLNLLIEAAVKDKTKFTKEEIQTAYDAYVPS------VKAAHILVEDEAKA 153

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP 340
            +    L  G  F +LA+E     +  + G   +FS   +      ++ ++L +    T 
Sbjct: 154 KDLIAQLNDGADFAKLAKENSADTATAANGGEVTFSSGEMV-PEFEEAAYALKEGEMTTE 212

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            +   +G+ I  +  I      + +E    I +Q+  TK ++   
Sbjct: 213 PVATEYGFHIIKM--IDKPEKGTLKEETDTIKDQLLQTKLADSAY 255


>gi|126441500|ref|YP_001057745.1| putative survival protein SurA [Burkholderia pseudomallei 668]
 gi|134279812|ref|ZP_01766524.1| putative survival protein SurA [Burkholderia pseudomallei 305]
 gi|217419752|ref|ZP_03451258.1| putative chaperone surA [Burkholderia pseudomallei 576]
 gi|226830776|ref|YP_001064989.2| putative survival protein SurA [Burkholderia pseudomallei 1106a]
 gi|237810895|ref|YP_002895346.1| chaperone SurA [Burkholderia pseudomallei MSHR346]
 gi|254258573|ref|ZP_04949627.1| putative chaperone surA [Burkholderia pseudomallei 1710a]
 gi|126220993|gb|ABN84499.1| putative chaperone surA [Burkholderia pseudomallei 668]
 gi|134249012|gb|EBA49094.1| putative survival protein SurA [Burkholderia pseudomallei 305]
 gi|210148311|gb|ABN91359.2| putative chaperone SurA [Burkholderia pseudomallei 1106a]
 gi|217397056|gb|EEC37072.1| putative chaperone surA [Burkholderia pseudomallei 576]
 gi|237504702|gb|ACQ97020.1| chaperone SurA [Burkholderia pseudomallei MSHR346]
 gi|254217262|gb|EET06646.1| putative chaperone surA [Burkholderia pseudomallei 1710a]
          Length = 450

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 41  DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 95

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D+  V   + R      + N    D + +R+  +G+    ++      L
Sbjct: 96  VQRAKDDGIVVDNATVQATLGRL----AQANGMQLDQYKARIEAQGVPWDLFVRDARTEL 151

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211
             + +    V   +  S+  +               ++  +++I +        AD   A
Sbjct: 152 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAPQADIDVA 211

Query: 212 VLTQ---------------WFEKYKDN-----------YRAPEYKRISYILFDVHEKEKK 245
                                 K +             +++P       +      +  +
Sbjct: 212 QKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPASLPSDVVDAVSKLRPGE 271

Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286
           +  +   +   +E          +N           V  ++       ++ +A +     
Sbjct: 272 VNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 331

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 332 RRQIESGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNTL-QDGQVSNPVR 389

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 390 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 438


>gi|237729350|ref|ZP_04559831.1| peptidyl-prolyl cis-trans isomerase SurA [Citrobacter sp. 30_2]
 gi|226909079|gb|EEH94997.1| peptidyl-prolyl cis-trans isomerase SurA [Citrobacter sp. 30_2]
          Length = 428

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 116/369 (31%), Gaps = 57/369 (15%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    L Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQILLQMGQKMGVKISDEQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFY-FENR 190
           + D   SRLA++G++   Y     K ++ ++V        +      +D   +    +N 
Sbjct: 110 TLDQMRSRLAQDGLSYSTYRSQIRKEMTISEVRNNEVRRRVTILPQEVDALAQQVGNQND 169

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQ-----------------------WFEKYKDNY--- 224
           +   + L++  +P   +P++  +                          +   +      
Sbjct: 170 ASTELNLSHILIPLPENPTSDQVNAAESQARSVVDEARNGSDFGKLAITYSADQQALKGG 229

Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-----EQ 274
                R  E   I        +K   I      +     K  +     +  +V       
Sbjct: 230 QMGWGRIQELPGIFAQALSTAKKGDIIGPIRSGVGFHILKVNDMRGQSQSISVTEVHARH 289

Query: 275 LVFP-----NQKEADEAFQSLKKG-----KKFIQLAEEQGKSLSDISLG---SFSKEYIP 321
           ++         ++A    + +          F   A+E  +     + G    ++   I 
Sbjct: 290 ILLKPSPIMTDQQARLKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAAADIF 349

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           D +  D++  L  KG  +  +H SFG+ +  + + + +   +    K      +   K S
Sbjct: 350 DPAFRDALTKL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKTDAAQKDRAYRMLMNRKFS 407

Query: 382 EKVKEDYKR 390
           E+     + 
Sbjct: 408 EEAATWMQE 416



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 79/237 (33%), Gaps = 17/237 (7%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278
             YR+   K ++      +E  +++ I   E+ A  ++   +  +     +  ++ P   
Sbjct: 126 STYRSQIRKEMTISEVRNNEVRRRVTILPQEVDALAQQVGNQNDASTELNLSHILIPLPE 185

Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328
                     + +A       + G  F +LA         +  G      I +   +   
Sbjct: 186 NPTSDQVNAAESQARSVVDEARNGSDFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQ 245

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKVKE 386
             S AKKGD    I    G+ I  V++++  S ++S  EV    I  +       ++ + 
Sbjct: 246 ALSTAKKGDIIGPIRSGVGFHILKVNDMRGQSQSISVTEVHARHILLKPSPIMTDQQARL 305

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
             +++   +  G +    +   K  S D    +  G           P     L ++
Sbjct: 306 KLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWAAADIFDPAFRDALTKL 360


>gi|53718302|ref|YP_107288.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei K96243]
 gi|52208716|emb|CAH34652.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei K96243]
          Length = 450

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 41  DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 95

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D+  V   + R      + N    D + +R+  +G+    ++      L
Sbjct: 96  VQRAKDDGIVVDNATVQATLGRL----AQANGMQLDQYKARIEAQGVPWDLFVRDARTEL 151

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211
             + +    V   +  S+  +               ++  +++I +        AD   A
Sbjct: 152 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAPQADIDVA 211

Query: 212 VLTQ---------------WFEKYKDN-----------YRAPEYKRISYILFDVHEKEKK 245
                                 K +             +++P       +      +  +
Sbjct: 212 QKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPASLPSDVVDAVSKLRPGE 271

Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286
           +  +   +   +E          +N           V  ++       ++ +A +     
Sbjct: 272 VNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 331

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 332 RRQIESGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNTL-QDGQVSNPVR 389

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 390 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 438


>gi|89100857|ref|ZP_01173708.1| post-translocation molecular chaperone [Bacillus sp. NRRL B-14911]
 gi|89084443|gb|EAR63593.1| post-translocation molecular chaperone [Bacillus sp. NRRL B-14911]
          Length = 289

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 59/172 (34%), Gaps = 27/172 (15%)

Query: 202 VPAIADPSNAVLTQWFEKYKDN-------------YRAPE--YKRISYILFDVHEKEKKI 246
           +      ++  L +  ++ K               Y   E   +     L       K +
Sbjct: 66  LSEKYKVTDEELNEKIDELKQQLGANFEMALAQYGYEDEEDLKETFKTGLLQEKAAIKDV 125

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EE 302
           E +  E++  Y+  K +           ++  ++K A E  + L +G KF  LA    ++
Sbjct: 126 EATEKEVKEYYDNYKPEI------KARHILVEDEKTAKEVKKKLDEGAKFEDLATEYSQD 179

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            G + +   LG F    +      ++ ++L    + +  +    GY I   +
Sbjct: 180 PGSAANGGDLGWFGAGKMV-PEFEEAAYAL-DVNEISEPVKTEHGYHIIQTT 229


>gi|83749338|ref|ZP_00946335.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
 gi|83724016|gb|EAP71197.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
          Length = 495

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/408 (11%), Positives = 110/408 (26%), Gaps = 66/408 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +     ++        +  +   +    RA  +G   ++L+ L+     
Sbjct: 88  DEVVAVVNTDIITRRELLDRADLVERTLQAQNRPM--PARADLLG---EVLEQLILERVQ 142

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G+      V   +        + N  S     S+LA+ G+   +Y +   + +
Sbjct: 143 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLAQSGLAYDKYREDLRQEI 198

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
               +    V   ++  +  +D          + +    N   +        +   +   
Sbjct: 199 LLARLRDREVDSKVQVFDGEIDNFLAQQGGGATGEAQEYNVAQILVPVAEDASAEQKAAA 258

Query: 219 KYKDN------------------------------------YRAPEYKRISYILFDVHEK 242
           + K                                       R P     + +     + 
Sbjct: 259 RGKAESLLKQAQGGADFAKLARDSSSGPEAAQGGELGLRSIGRLPTQFANAVVDLKPGQL 318

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQK--EADEAFQSLKK--- 292
             ++  S          +K    +          V  ++        AD+A + L     
Sbjct: 319 AGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGPTMSADDARRQLAGLRD 378

Query: 293 ----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
               G  F   A    +  S      LG  S   +       ++ +L K G+ +  +   
Sbjct: 379 RIVHGYDFSDAARRYSQDTSASAGGELGWVSPGQLV-PEFEQAM-NLLKPGEVSQPVQSQ 436

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           FG  +  V   + +        +    + +R  K     ++  ++L +
Sbjct: 437 FGVHLIQVEGRRDAEV-PVDRQRDYARSVIREQKVQAAYEDWLRQLRD 483


>gi|72386957|ref|XP_843903.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Trypanosoma
           brucei TREU927]
 gi|62359031|gb|AAX79480.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Trypanosoma brucei]
 gi|70800435|gb|AAZ10344.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
          Length = 122

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLA 326
              V  ++      A EA + +K G+ F  +A +  +    S   LG  ++  +     +
Sbjct: 33  KVKVRHILCEKLSRALEALEKIKAGESFANVARDYSEDKARSGGDLGWVTRGAMVG-EFS 91

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +  F+L K G     +   FGY I  V + +
Sbjct: 92  EKAFALPKGGMTQEPVKTKFGYHIIFVEDKQ 122


>gi|291616238|ref|YP_003518980.1| SurA [Pantoea ananatis LMG 20103]
 gi|291151268|gb|ADD75852.1| SurA [Pantoea ananatis LMG 20103]
 gi|327392689|dbj|BAK10111.1| chaperone SurA precursor [Pantoea ananatis AJ13355]
          Length = 431

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/377 (12%), Positives = 107/377 (28%), Gaps = 60/377 (15%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+  +  A + Q  +  GL+    ++   I          N+ 
Sbjct: 54  KQAGQQLPDDKTLRHQILEREIMDAIILQLGDKAGLQITDQQLDQAIQNIAA----QNRM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191
           S D   SRLA +G+N   Y     K +  ++V        +      +D   +      +
Sbjct: 110 SVDQLRSRLAYDGMNYNTYRAQIRKEMLISEVRNNEVRRRVTILPQEVDTLAQQVGAQNT 169

Query: 192 ------VDYIVLNNRHVPAIADPSNAV------------------LTQWFEKYKDNYRAP 227
                 + +I+L     P      +                    L   +       +  
Sbjct: 170 QGTEMNISHILLPLPENPTQQQVDDQEKLAKQLITELKGGADFGKLAVTYSADSQALKGG 229

Query: 228 EYKRISYILFDVHEKEKKIEISNDEL-------------QAEYEKNKEKYFSPEIRTVEQ 274
                          +        ++             +    + + K  S        
Sbjct: 230 NMGWAKIEELPTLFAQALTTAKKGDIVGPIRSGVGFHILKVNDLRGESKNVSVTEVHARH 289

Query: 275 LVFP---------NQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGS---FSKEYIP 321
           ++            + + ++    ++ GK  F   A++        + G    ++   + 
Sbjct: 290 ILLKPSPIMTDDQARAKLEQIAADIRSGKTTFAAAAKQFSDDPGSANQGGDLGWTSPEVF 349

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           D +  D++  L KKG+ +  +H SFG+ +  + + +                  R+    
Sbjct: 350 DPAFRDALLRL-KKGETSQPVHSSFGWHLIQLLDTRQVDKTD----AAQKERAYRMLFNR 404

Query: 382 EKVKEDYKRLEEFLALG 398
           +  +E    ++E  A  
Sbjct: 405 KFAEEAQTWMQEQRAGA 421



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 84/241 (34%), Gaps = 21/241 (8%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YRA   K +       +E  +++ I   E+    ++   +        +  ++ P 
Sbjct: 124 NYNTYRAQIRKEMLISEVRNNEVRRRVTILPQEVDTLAQQVGAQNTQGTEMNISHILLPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVS 324
                       +K A +    LK G  F +LA       ++L   ++G    E +P  +
Sbjct: 184 PENPTQQQVDDQEKLAKQLITELKGGADFGKLAVTYSADSQALKGGNMGWAKIEELP--T 241

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASE 382
           L     + AKKGD    I    G+ I  V++++  S  VS  EV    I  +       +
Sbjct: 242 LFAQALTTAKKGDIVGPIRSGVGFHILKVNDLRGESKNVSVTEVHARHILLKPSPIMTDD 301

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
           + +   +++   +  G +    +   K  S D    +  G           P     L R
Sbjct: 302 QARAKLEQIAADIRSGKT--TFAAAAKQFSDDPGSANQGGDLGWTSPEVFDPAFRDALLR 359

Query: 443 V 443
           +
Sbjct: 360 L 360


>gi|332994413|gb|AEF04468.1| survival protein surA [Alteromonas sp. SN2]
          Length = 426

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/397 (13%), Positives = 124/397 (31%), Gaps = 67/397 (16%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           ++ +  LV   + F     S     V      V V +  V  S    +   ++   ++  
Sbjct: 3   FIIRALLVSAVLSF-----SSYAQEVMLDRVAVIVDQGVVLQSEVD-ALMNDVKRNAEAN 56

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  + S+RA    L  + ++ L++ +   Q  + +G++    ++   IA           
Sbjct: 57  GQDLPSDRA----LRTQAIERLITKSLQLQMAQRMGIQISDPQLEQTIANIAANQNTT-- 110

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSR-TDVVGMFVGGMRPSNLLLDQAKRFYFEN- 189
              D    +L  EGI  ++Y +   + +             +  ++   +       +  
Sbjct: 111 --VDELRRQLRLEGIAYEDYREDIREEIVMGEVRRANVRRRVYITDQERETLIELMEQQG 168

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFE--------------------KYKDNYRAPEY 229
              +   L +  +   +DPS+  +    E                           A E 
Sbjct: 169 AEQEEYRLGHILIGFPSDPSDEQIDAARERADKVLSLLNSGSDFAKIAIASSSGNEALEG 228

Query: 230 KRISYILFDVHEKEKKIEI---SNDELQ------------AEYEKNKEKYFSPEIRTVEQ 274
             + ++  +         I   + DEL                +    +  + E      
Sbjct: 229 GDMGWLNINAMPTLFAEAIQGKAKDELVGPIRSGAGFHILKVLDTRGIEKVTIEEVNSRH 288

Query: 275 LVFP-----NQKEADEAF----QSLKKGK-KFIQLAEE----QGKSLSDISLGSFSKEYI 320
           ++       ++ +A          L+ G+ +F  LA+E     G +L    LG       
Sbjct: 289 ILVKPSIILSEDKAKAMLVKFRAQLEAGEVEFEDLAKEHSEDPGSALKGGELGWSDPNNY 348

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
              +  D++  L+  G+++  +    G+ +  + + +
Sbjct: 349 V-PAFKDALAQLS-AGEYSDPVRSVHGWHLIQLIDRR 383



 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 86/248 (34%), Gaps = 32/248 (12%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277
           ++YR    + I           +++ I++ E +   E  +++    E   +  ++     
Sbjct: 126 EDYREDIREEIVMGEVRRANVRRRVYITDQERETLIELMEQQGAEQEEYRLGHILIGFPS 185

Query: 278 --------PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLA 326
                     ++ AD+    L  G  F ++A        +L    +G  +   +P    A
Sbjct: 186 DPSDEQIDAARERADKVLSLLNSGSDFAKIAIASSSGNEALEGGDMGWLNINAMP-TLFA 244

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-------VKKDIANQMRITK 379
           ++I   AK  +    I    G+ I  V + +    V+ +E       VK  I   +   K
Sbjct: 245 EAIQGKAKD-ELVGPIRSGAGFHILKVLDTRGIEKVTIEEVNSRHILVKPSII--LSEDK 301

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           A   + +   +LE   A     +++++     S D       G+         +P  +  
Sbjct: 302 AKAMLVKFRAQLE---AGEVEFEDLAKEH---SEDPGSALKGGELGWSDPNNYVPAFKDA 355

Query: 440 LFRVFGKD 447
           L ++   +
Sbjct: 356 LAQLSAGE 363


>gi|330719900|gb|EGG98375.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [gamma proteobacterium IMCC2047]
          Length = 429

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 62/434 (14%), Positives = 132/434 (30%), Gaps = 79/434 (18%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           ML  +RK        +   +   P ++                V V    +  S    + 
Sbjct: 1   MLNSLRKY----FTTLLAALCLAPSML-----YAAIQPLDRIAVIVNDDIIMQSQVQQAI 51

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
              +  + Q+     N +      L ++++++L+  +   Q  E  G+  D   +   I+
Sbjct: 52  DSAIRNLQQR-----NQQMPPKKVLIQQVVESLIMESLQLQIAERGGIRVDDTSLNEAIS 106

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLL 179
           R        N  + + F   +  EG +     +   + L  T      VG  ++ ++  +
Sbjct: 107 RIAA----QNNMTLEQFQQAIIAEGSDYAATREQIRRELLTTRARQGSVGPRIQITDQEI 162

Query: 180 D------QAKRFYFENRSVDYIVLNNRHVPAIAD-----------------PSNAVLTQW 216
           D      + K        + +I++   +    A                     A LT+ 
Sbjct: 163 DNFLDSAEGKALLASKFHIAHILVKPDNNTQPARQKAKKQAQALYQQLQSGADFAALTKQ 222

Query: 217 FEKYK-----------DNYRAPEYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKY 264
           +               D  + P   + +    +  E  + I  SN   L    EK     
Sbjct: 223 YSDGPNAEQGGSMGWRDESQLPSLFKNTVKALNDGEVSEPIASSNGFHLVKLLEKRGGTS 282

Query: 265 FSPEIRTVEQLVFP-----NQKEADE----AFQSLKKGKKFIQLA----EEQGKSLSDIS 311
              +   V  ++       ++++A+E     F  ++ G+ F +LA     + G       
Sbjct: 283 IIQDQTQVRHILIQPNEIRSERQAEEMIYDLFTRIQSGEDFAELARLYSADPGSRAKGGE 342

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           LG  +   +   S    +      G  +      +G+ I  V   +          ++DI
Sbjct: 343 LGWITPAGLV-PSFVKVMKETPVDG-ISAPFKSRYGWHILEVQGRR----------QQDI 390

Query: 372 ANQMRITKASEKVK 385
                  +A E + 
Sbjct: 391 GADAARQQAREVIY 404



 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 98/291 (33%), Gaps = 41/291 (14%)

Query: 142 AREGINEKE-YIDHYTKMLSRTDVVGMFV--GGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
             + +  K+  I    + L    +       GG+R  +  L++A          + + L 
Sbjct: 61  RNQQMPPKKVLIQQVVESLIMESLQLQIAERGGIRVDDTSLNEAISRIAAQ---NNMTLE 117

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
                 IA+ S+      +   ++  R    + +            +I+I++ E+    +
Sbjct: 118 QFQQAIIAEGSD------YAATREQIR----RELLTTRARQGSVGPRIQITDQEIDNFLD 167

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-----------GKKFIQLAEEQGK-- 305
             + K        +  ++         A Q  KK           G  F  L ++     
Sbjct: 168 SAEGKALLASKFHIAHILVKPDNNTQPARQKAKKQAQALYQQLQSGADFAALTKQYSDGP 227

Query: 306 -SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF--TV 362
            +    S+G   +  +P +   +++ +L   G+ +  I  S G+ +  +   +       
Sbjct: 228 NAEQGGSMGWRDESQLPSL-FKNTVKAL-NDGEVSEPIASSNGFHLVKLLEKRGGTSIIQ 285

Query: 363 SFQEVKKDIAN--QMRITK-ASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
              +V+  +    ++R  + A E + + + R++     G    E++R    
Sbjct: 286 DQTQVRHILIQPNEIRSERQAEEMIYDLFTRIQ----SGEDFAELARLYSA 332


>gi|332970909|gb|EGK09885.1| peptidyl-prolyl cis-trans isomerase [Psychrobacter sp. 1501(2011)]
          Length = 487

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/418 (12%), Positives = 125/418 (29%), Gaps = 69/418 (16%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
           S +  +  V    +  S   ++       I        + +R     L   +L+ L+   
Sbjct: 76  STNGIIAIVNDTPILKSELASAVATAQARIQASGQPAPSPQR-----LQNDVLNGLILRE 130

Query: 98  TLDQFIEDIGLEADHGRVWGEI---------ARSPLFHGKDNKFSHDVFVSRLAREGINE 148
                ++  G+  D   V   +                   +      + +    + I E
Sbjct: 131 LQLDMVKRAGIRPDENAVNQSLGRLAQSQGLKSLTELQQALDAKQPGRYAAV-RAQVIEE 189

Query: 149 KEYIDHYTKMLSRTDVV-----GMFVGGMRPSNLLLDQAKRFY--------------FEN 189
           +         ++R   +       F+       L   + +  +               E 
Sbjct: 190 ESLKALQQSQVARRVRITDHDVDAFLASPEAQKLQSTEYRTIHIRVPFSDDYNRITDSEK 249

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY----------------KRIS 233
           ++   I    + +   +D ++ VL+Q       NY AP                   +  
Sbjct: 250 KAAMQIAQQAQELLKSSDDADMVLSQLSAGTAKNYIAPVQGGDMGFHPAAGLPIDIAKQI 309

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEAD 284
             L      E +I     ++    +K+           V  ++            +++ +
Sbjct: 310 TPLEIGQVTEPQITPEGIDIVKLVDKHTNDNMIIPQWKVRHILVKTDERNSDALAEQKIN 369

Query: 285 EAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           + ++ L++   F  LA     + G +     L   ++  +      + +     +GD++ 
Sbjct: 370 DLYEQLRRDADFASLAATYSDDPGSAGRGGDLDWVAEGQMV-PEFEE-MMKRTPEGDYST 427

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
                FG+ I  V  ++         VK+++A +    + + + +ED+  L+E  A  
Sbjct: 428 PFKSQFGWHILKVEGVRQKDVS--DTVKRNLAREALYQRLAPQAQEDW--LQELRANA 481


>gi|300715281|ref|YP_003740084.1| hypothetical protein EbC_06930 [Erwinia billingiae Eb661]
 gi|299061117|emb|CAX58224.1| uncharacterized protein [Erwinia billingiae Eb661]
          Length = 431

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/396 (12%), Positives = 127/396 (32%), Gaps = 62/396 (15%)

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           Q +   +Q+ G  +  ++     L  +I++ LV    L Q  +  G++    ++ G I  
Sbjct: 47  QSVKSQAQQAGQQLPDDK----TLRHQIVERLVMDNILLQMAKQSGIQVTDAQLDGAIQN 102

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLD 180
                   NK + D   SRLA +G+N   Y +   + ++ ++V        +      +D
Sbjct: 103 IAA----QNKMTPDQLRSRLAYDGMNYGTYREQIRREMTISEVRNNEVRRRVTILPQEVD 158

Query: 181 QAKRFYFEN------RSVDYIVLNNRHVPAIADPSNAV------------------LTQW 216
              +            ++ +I+L     P      +                    L   
Sbjct: 159 SLSKQVASQNNASTELNLSHILLPLPENPTQQQVDDQETLAKQLVSQSKSGADFGKLAIT 218

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL-------------QAEYEKNKEK 263
           +       +                 +  +     ++             +    + + +
Sbjct: 219 YSADPQALKGGNMGWGKIQELPSLFAQALVTAKKGDIIGPIRSGVGFHILKVNDVRGESQ 278

Query: 264 YFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG 313
             S        ++            +++ ++    +  GK  F + A++  +     + G
Sbjct: 279 NVSVTEVHARHILLKPSPVMTDEQARQKLEQVVADINSGKTTFAEEAKQLSQDPGSANQG 338

Query: 314 ---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
               +S   + D +  D++  L KKG  +  +H SFG+ +  + + +     +    K+ 
Sbjct: 339 GDLGWSSPEMYDPAFRDALMKL-KKGQLSAPVHSSFGWHLIQLLDTR-QVDKTDAAQKER 396

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
               +   K +E+ +   +  +   A    +D  ++
Sbjct: 397 AYRLLFNRKFAEEAQTWMQE-QRAAAYVKILDANAQ 431


>gi|295688302|ref|YP_003591995.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
           ATCC 21756]
 gi|295430205|gb|ADG09377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
           ATCC 21756]
          Length = 329

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 57/145 (39%), Gaps = 6/145 (4%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++ D ++  Y + ++     E     Q++  +Q EA+   + L  G  F  LA E+   
Sbjct: 139 AVTEDAIRKLYAEQQKLSKRSEEIRARQIIVGSQAEAESVKKLLATGASFDALAMERSTD 198

Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                +   LG F+ + +P+          A+KG          G+V+  V + +    +
Sbjct: 199 QATRFNGGDLGYFTLDVMPEPYG--VALKDAQKGALVGPFAAEGGWVLVRVEDKRVEEPI 256

Query: 363 SFQEVKKDIANQMRITKASEKVKED 387
           + +  +  I   +   +  + +++ 
Sbjct: 257 TLEAARPQIVRFLTYDQVRDILEKL 281



 Score = 37.3 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/151 (10%), Positives = 49/151 (32%), Gaps = 11/151 (7%)

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKV---KEDYKRLEEFLALGTSMDEISRREKI 410
             +           ++ ++ +    +A + +   + + + +++ LA G S D ++     
Sbjct: 138 KAVTEDAIRKLYAEQQKLSKRSEEIRARQIIVGSQAEAESVKKLLATGASFDALAMERS- 196

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                    F G D+    +  +P    +      KD            +G ++ V++++
Sbjct: 197 ---TDQATRFNGGDLGYFTLDVMPEPYGVAL----KDAQKGALVGPFAAEGGWVLVRVED 249

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
                   LE     + +     +  + +  
Sbjct: 250 KRVEEPITLEAARPQIVRFLTYDQVRDILEK 280


>gi|189502175|ref|YP_001957892.1| hypothetical protein Aasi_0785 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497616|gb|ACE06163.1| hypothetical protein Aasi_0785 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 445

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/429 (11%), Positives = 121/429 (28%), Gaps = 80/429 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              + SV  Q +  S     ++                + A       ++L+N+V    L
Sbjct: 32  DKVIASVDDQPILQSELDAEYQLYQAQ-----------DNASKKPTKCQVLENMVINKIL 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
                   +   +G V   +                   + L   G  E     +  K  
Sbjct: 81  LANAAKKEINVKNGEVDRYLKY--------------RMQAILEEVG-TEARLEQYIRK-- 123

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                         P ++  ++ ++   E  +++ +      +      S   +  +F++
Sbjct: 124 --------------PIHVFKEELRKSIREQLTIEKMR---DSIIGNITISPIEVQSYFDQ 166

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
              +        + +    V   +  +  S +E +                   +LV  N
Sbjct: 167 LPAS-------DVPFFPATVEAYQLVLFPSIEEQEK------------------KLVIEN 201

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKG 336
                     ++ G+ F  LA +  + +   S G    F +    D S   +  +L   G
Sbjct: 202 LA---SLKTRIQAGESFAVLARQYSEDIGSASNGGELGFWRIGELDSSYEKAALAL-NPG 257

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           + +  +   FG+ I  +   +     +   + K +A ++ I +A E++      + E   
Sbjct: 258 EISEPVETRFGFHIIQLIEKQKDKYNTRHILLKPLAAKVSIEEAIERINNIRTSILEK-- 315

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
              + ++ +                  + +G ++        + F +            V
Sbjct: 316 -QVTFEKAAMSYSQDIATAHQGGLLTGNSEGVQMPVDKLPSDVFFILDKMAPGDVSRPIV 374

Query: 457 ALPDGSYMW 465
              DG    
Sbjct: 375 FTIDGKQAA 383


>gi|149199507|ref|ZP_01876542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lentisphaera
           araneosa HTCC2155]
 gi|149137442|gb|EDM25860.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lentisphaera
           araneosa HTCC2155]
          Length = 308

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 99/353 (28%), Gaps = 78/353 (22%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT-L 99
           S +  V    +          +E   + Q         R     L ++ LD L+     L
Sbjct: 23  SIMAKVNGHIITSYDIQELSYREEMRLRQIFNGPELPSRIVD--LRRRALDILIEEQLIL 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           D F  +   +     +   I +S     +      D F   L ++ +  +EY +   + +
Sbjct: 81  DHFNSNDAYQVPSSLLEERIEKSIA--RRFGS-DRDKFYDMLHQKDMTVEEYREEIERGI 137

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
               +   F                                 +      +   +  +F +
Sbjct: 138 ILELMRMEF---------------------------------IRKKIVVTPHDIALYFAE 164

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            K  +  P    I  I+                 +++Y++   K                
Sbjct: 165 NKAEFATPSQMHIKLIILSKD-------------KSKYDERVTK---------------- 195

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                   Q LK GK F +L   Q  S  +  LG      I    L        K G++ 
Sbjct: 196 ------LKQELKDGKSFDELM-PQSDSQFNGDLGFLKMTDIRPDFLE--ALKDKKAGEYI 246

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +   +   +   +S ++ S     +++   I +++   +  +  +E    L+
Sbjct: 247 TIEETTQM-LFVQLSEVRKSAVPPLEDISDQIKSKLSSDQEKQYREEFIGDLK 298


>gi|285808214|gb|ADC35748.1| hypothetical protein [uncultured bacterium 293]
          Length = 250

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 6/155 (3%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           R++       E   ++++S  E+      +  +   PE  T+ Q++ P   EA +  + L
Sbjct: 68  RVAVEQLLASEMAARVKVSETEIADYARDHTAELGRPEEVTLRQILVPTANEARDVQRRL 127

Query: 291 KK-GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           +K  K F  LA+      ++     +GSFS   +P   L  + F+L K G+ + ++    
Sbjct: 128 QKDPKSFELLAQSVSRGPEAGKGGLMGSFSAGQLP-PELEAAAFAL-KPGETSGIVVTPL 185

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           G  +  +     +   S +E +  +   +R  K+S
Sbjct: 186 GQHVLRLEARTAAHPFSPEETRDRVRALLREKKSS 220


>gi|300939470|ref|ZP_07154132.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
 gi|300455691|gb|EFK19184.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
          Length = 428

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/388 (12%), Positives = 125/388 (32%), Gaps = 69/388 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-I 232
               ++   +    +N +   + L++  +P   +P++  + +   + +      + +   
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE--AESQARTIVDQARNGA 210

Query: 233 SYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE---------------- 268
            +    +     +  ++          EL   + +        +                
Sbjct: 211 DFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKV 270

Query: 269 -------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGK 305
                              ++         ++A    ++    +K GK  F   A+E  +
Sbjct: 271 NDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQ 330

Query: 306 SLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   
Sbjct: 331 DPGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDK 388

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390
           +    K      +   K SE+     + 
Sbjct: 389 TDAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARTIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|167892891|ref|ZP_02480293.1| putative survival protein SurA [Burkholderia pseudomallei 7894]
 gi|254187685|ref|ZP_04894197.1| putative survival protein SurA [Burkholderia pseudomallei Pasteur
           52237]
 gi|157935365|gb|EDO91035.1| putative survival protein SurA [Burkholderia pseudomallei Pasteur
           52237]
          Length = 448

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 39  DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D+  V   + R      + N    D + +R+  +G+    ++      L
Sbjct: 94  VQRAKDDGIVVDNATVQATLGRL----AQANGMQLDQYKARIEAQGVPWDLFVRDARTEL 149

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211
             + +    V   +  S+  +               ++  +++I +        AD   A
Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAPQADIDVA 209

Query: 212 VLTQ---------------WFEKYKDN-----------YRAPEYKRISYILFDVHEKEKK 245
                                 K +             +++P       +      +  +
Sbjct: 210 QKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPASLPSDVVDAVSKLRPGE 269

Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286
           +  +   +   +E          +N           V  ++       ++ +A +     
Sbjct: 270 VNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 330 RRQIESGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNTL-QDGQVSNPVR 387

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436


>gi|283835117|ref|ZP_06354858.1| peptidylprolyl cis-trans isomerase SurA [Citrobacter youngae ATCC
           29220]
 gi|291069416|gb|EFE07525.1| peptidylprolyl cis-trans isomerase SurA [Citrobacter youngae ATCC
           29220]
          Length = 428

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 115/369 (31%), Gaps = 57/369 (15%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    L Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQILLQMGQKMGVKISDEQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFY-FENR 190
           + D   SRLA++G+N   Y     K ++ ++V        +      +D   +    +N 
Sbjct: 110 TLDQMRSRLAQDGLNYSTYRSQIRKEMTISEVRNNEVRRRVTILPQEVDALAQQVGNQND 169

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQ-----------------------WFEKYKDNY--- 224
           +   + L++  +P   +P++  +                          +   +      
Sbjct: 170 ASTELNLSHILIPLPENPTSDQVNAAESQARSVVDEARNGSDFGKLAITYSADQQALKGG 229

Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-----EQ 274
                R  E   I        +K   I      +     K  +     +  +V       
Sbjct: 230 QMGWGRIQELPGIFAQALSTAKKGDIIGPIRSGVGFHILKVNDMRGQSQSISVTEVHARH 289

Query: 275 LVFP-----NQKEADEAFQSLKKG-----KKFIQLAEEQGKSLSDISLG---SFSKEYIP 321
           ++         ++A    + +          F   A+E  +     + G    ++   I 
Sbjct: 290 ILLKPSPIMTDQQARLKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAAADIF 349

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           D +  D++  L  KG  +  +H SFG+ +  + + +     +    K      +   K S
Sbjct: 350 DPAFRDALTKL-NKGQMSAPVHSSFGWHLIELLDTRK-VDKTDAAQKDRAYRMLMNRKFS 407

Query: 382 EKVKEDYKR 390
           E+     + 
Sbjct: 408 EEAATWMQE 416



 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
               YR+   K ++      +E  +++ I   E+ A  ++   +  +     +  ++ P 
Sbjct: 124 NYSTYRSQIRKEMTISEVRNNEVRRRVTILPQEVDALAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         +  G      I +   + 
Sbjct: 184 PENPTSDQVNAAESQARSVVDEARNGSDFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S ++S  EV    I  +       ++ 
Sbjct: 244 AQALSTAKKGDIIGPIRSGVGFHILKVNDMRGQSQSISVTEVHARHILLKPSPIMTDQQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L ++
Sbjct: 304 RLKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWAAADIFDPAFRDALTKL 360


>gi|320668802|gb|EFX35597.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. LSU-61]
          Length = 428

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/388 (12%), Positives = 125/388 (32%), Gaps = 69/388 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-I 232
               ++   +    +N +   + L++  +P   +P++  + +   + +      + +   
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE--AESQARAIVDQARNGA 210

Query: 233 SYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE---------------- 268
            +    +     +  ++          EL   + +        +                
Sbjct: 211 DFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKV 270

Query: 269 -------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGK 305
                              ++         ++A    ++    +K GK  F   A+E  +
Sbjct: 271 NDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQ 330

Query: 306 SLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   
Sbjct: 331 DPGSANQGGDLGWATPDIFDPAFRDALTHL-NKGQMSAPVHSSFGWHLIELLDTR-NVDK 388

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390
           +    K      +   K SE+     + 
Sbjct: 389 TDAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 78/239 (32%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L  +
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTHL 360


>gi|294139570|ref|YP_003555548.1| survival protein surA [Shewanella violacea DSS12]
 gi|293326039|dbj|BAJ00770.1| survival protein surA [Shewanella violacea DSS12]
          Length = 434

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 103/337 (30%), Gaps = 61/337 (18%)

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  + S++A    L  ++++ L+      Q  + IGL     ++   I        KD K
Sbjct: 59  GQSLPSDQA----LRTQVIERLIVTRLQMQMADRIGLHIGDLQLDQTIGNI----AKDQK 110

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN- 189
            + D    ++  EG++   Y +   + ++  ++        ++ S   ++       E  
Sbjct: 111 LTVDQMKHKIGGEGMSWSHYREQLREEMTLGEIQRIQVQRRIQVSPQEINNLVNMIEEQG 170

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFE-KYK--------DNYRAP-----------EY 229
                  + +  +    DP++  L +      K         ++R             E 
Sbjct: 171 LKQTEFQIGHILIEIPNDPTSEQLEKASNRANKVLERVKDGGDFRRTAIAASAGPKALEG 230

Query: 230 KRISYILFDVHEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQ 274
               Y+  +         +S+ +               +    +    +    +      
Sbjct: 231 GIWDYMNINEMPTLFAEVLSDAKKGDIIGPIRSGAGFHIIKVIDARGLQTKEVKEVRSRH 290

Query: 275 LVFP-----NQKEADEAFQ----SLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYI 320
           ++       +++ A          L+ G   F  LA    E+ G +     LG  +   +
Sbjct: 291 ILIKPSPILSEERAKAMLDKFVKQLRAGDADFAALAHKYSEDPGSAAKGGELGW-ADPTV 349

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
              + + ++  L    D +     + G+ I  +   +
Sbjct: 350 YVPAFSQTLKGL-NVNDISEPFRSTHGWHIVQLEERR 385



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 85/243 (34%), Gaps = 22/243 (9%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
            +YR    + ++       + +++I++S  E+       +E+        +  ++     
Sbjct: 128 SHYREQLREEMTLGEIQRIQVQRRIQVSPQEINNLVNMIEEQGLKQTEFQIGHILIEIPN 187

Query: 282 E------------ADEAFQSLKKGKKF--IQLAEEQG-KSLSDISLGSFSKEYIPDVSLA 326
           +            A++  + +K G  F    +A   G K+L        +   +P  +L 
Sbjct: 188 DPTSEQLEKASNRANKVLERVKDGGDFRRTAIAASAGPKALEGGIWDYMNINEMP--TLF 245

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVK 385
             + S AKKGD    I    G+ I  V + +   T   +EV+   I  +     + E+ K
Sbjct: 246 AEVLSDAKKGDIIGPIRSGAGFHIIKVIDARGLQTKEVKEVRSRHILIKPSPILSEERAK 305

Query: 386 EDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
               + +++  A       ++ +    S D       G+         +P   Q L  + 
Sbjct: 306 AMLDKFVKQLRAGDADFAALAHKY---SEDPGSAAKGGELGWADPTVYVPAFSQTLKGLN 362

Query: 445 GKD 447
             D
Sbjct: 363 VND 365


>gi|320172859|gb|EFW48091.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella dysenteriae CDC
           74-1112]
          Length = 428

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNHEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       HE  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNHEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|332283295|ref|YP_004415206.1| survival protein [Pusillimonas sp. T7-7]
 gi|330427248|gb|AEC18582.1| survival protein [Pusillimonas sp. T7-7]
          Length = 489

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/427 (11%), Positives = 114/427 (26%), Gaps = 83/427 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V +Q +         +     + ++     N        L K++L  ++     
Sbjct: 46  DGIAAVVNKQVITLQQVNKEARLAQEQLQRQ-----NIPVPDYAVLQKQVLQRMIMEELE 100

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E +G++    +V   +        + N+ +     + + + G    +Y+    + +
Sbjct: 101 RQEAERLGIKVSDAQVSQAVQTI----AERNRITPKQLRAEIEKTGGKWDDYLQGLRQEV 156

Query: 160 SRTDVVGMFVGGMRP-SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
               +    V      S+  +D   +   ++             P   +P          
Sbjct: 157 RTDLLRQRTVDSTIVISDAEVDAFLKSQGQS--------APASAPTAPEP---------- 198

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                   P+   ++ IL  V E     ++    L+                        
Sbjct: 199 --AARPAGPQILGLAQILVAVPEGASSAQVQALRLK------------------------ 232

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGD 337
               A++  + ++ G  F  +A         +  G    +       L        + G 
Sbjct: 233 ----AEDLLKQVQGGADFGGVAAASSDGPQALDGGELGVRPVEGWPDLFIKATQNLQAGQ 288

Query: 338 FTPVIHGSFGYVIAHVSNI--------KPSFTVSFQEV---------------KKDIANQ 374
            + ++    G+ I  V            PS   +  +                 + I  +
Sbjct: 289 VSGIVQSGNGFHILKVLTRGQPQSQAGSPSAPPTTAQQPAPMQQGPMMVTQTHARHILIK 348

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
                + EK      +L + L  G S +++++R        P     G    G+ V A  
Sbjct: 349 TTQVMSDEKASNRLAQLRQRLENGESFEDLAKRYSD-DATAPQGGDLGWLTPGETVPAFQ 407

Query: 435 YKEQLLF 441
                L 
Sbjct: 408 RAMDALQ 414



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 46/151 (30%), Gaps = 15/151 (9%)

Query: 269 IRTVEQLVFPN-----QKEA----DEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFS 316
                 ++         ++A     +  Q L+ G+ F  LA+             LG  +
Sbjct: 339 QTHARHILIKTTQVMSDEKASNRLAQLRQRLENGESFEDLAKRYSDDATAPQGGDLGWLT 398

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
                  +   ++ +L +    +  I   FG+ +  V   +     + +  +      + 
Sbjct: 399 PGETV-PAFQRAMDAL-QPNQISQPIQSQFGWHLIQVLERRTKNMEN-EFRRMQARQLLF 455

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
             +     ++   +L     +   +D  S R
Sbjct: 456 QRRVEPAFEDWLSQLRGEAYIDNRLDPASNR 486


>gi|307823841|ref|ZP_07654069.1| nitrogen fixation protein NifM [Methylobacter tundripaludum SV96]
 gi|307735135|gb|EFO05984.1| nitrogen fixation protein NifM [Methylobacter tundripaludum SV96]
          Length = 292

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 83/264 (31%), Gaps = 45/264 (17%)

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
               L+        + G       +     F  E+R ++          A    ++  L 
Sbjct: 16  LRAALALFKKSPNELAGAELQQAQIQALNEFRIESRVLNT------PEAAAVIITDQELQ 69

Query: 215 QWFEKYKDNYRAP-------EYKRISYILFDVH-------------EKEKKIEISNDELQ 254
             +++ +D Y          E  R+S                           IS  ++ 
Sbjct: 70  HAYQEIRDRYDDEDAFFSDLEKNRLSKASLQAALHRQCKVNTVLESIASHAPAISEIDIG 129

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAFQSL-KKGKKFIQLA- 300
             Y  + E++  PE R V  +      +            A E  + L KK  KF  LA 
Sbjct: 130 IYYHLHAEQFNCPERREVSHIFISINPDYAENTPEAALSRAQELAEKLHKKPHKFADLAL 189

Query: 301 --EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              E   +L    LG   +  +    L   +F+L K G+ + V+    G  +    +I+ 
Sbjct: 190 RHSECPTALQGGVLGIVPRGTLY-PELDAVLFNL-KPGEVSDVVKSEIGLHLLLCKSIQK 247

Query: 359 SFTVSFQEVKKDIANQMRITKASE 382
           + T+S  +    I  Q+   +A  
Sbjct: 248 AETLSLAKATPKIR-QLMKERARR 270


>gi|331650947|ref|ZP_08351975.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli M718]
 gi|331051401|gb|EGI23450.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli M718]
          Length = 428

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|329296585|ref|ZP_08253921.1| peptidyl-prolyl cis-trans isomerase SurA [Plautia stali symbiont]
          Length = 431

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/388 (13%), Positives = 116/388 (29%), Gaps = 64/388 (16%)

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           + +   +Q+ G  +  ++     L  + L+  V  A + Q  E  GL+    ++   I  
Sbjct: 47  RTVKSQAQQAGQQLPDDK----TLRHQFLERQVMDAIILQMGEKAGLQVSDQQLDQAIQS 102

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLD 180
                   N+ S D   SRLA +G+N  +Y     K +  ++V        +      +D
Sbjct: 103 IAA----QNRMSVDQLRSRLAYDGMNYNDYRAQIRKEMLISEVRNNEVRRRVTILPQEVD 158

Query: 181 QAKRFYFEN------RSVDYIVLNNRHVPAIADPSNAV------------------LTQW 216
              +            ++  I+L     P      +                    L   
Sbjct: 159 TLAKQIGSQNTQGTELNISQILLPLPENPTQQQVDDQEALARQLVGELKGGADFGKLAVT 218

Query: 217 FEKYKDNYR-----------APEYKRISYILFDVHEKEKKIE--ISNDELQAEYEKNKEK 263
           +       +            P     +       +    I   +    L+    + + K
Sbjct: 219 YSADPQALKGGNMGWGKIEELPTLFSQTLSSAKKGDIVGPIRSGVGFHILKVNDLRGESK 278

Query: 264 YFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG 313
             S        ++            +++ ++    +K GK  F   A +        + G
Sbjct: 279 NISVTEVLARHILLKPSPILTDDQARQKIEQITADIKSGKTTFAAAATQLSDDPGSANQG 338

Query: 314 ---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
               ++   I D +  D++  L +KG  +  +H SFG+ +  + + +             
Sbjct: 339 GDLDWASPEIDDPAFRDALLKL-QKGQVSAPVHSSFGWHLIQLLDTRQVDKTD----AAQ 393

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALG 398
                R+    +  +E    ++E  A  
Sbjct: 394 KERAYRLLFNRKFAEEAQTWMQEQRASA 421



 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 100/310 (32%), Gaps = 36/310 (11%)

Query: 155 YTKMLSRTDVVGMFV------GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
                    V+   +       G++ S+  LDQA +       +    L +R        
Sbjct: 66  LRHQFLERQVMDAIILQMGEKAGLQVSDQQLDQAIQSIAAQNRMSVDQLRSRL------- 118

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
                  +     ++YRA   K +       +E  +++ I   E+    ++   +     
Sbjct: 119 ------AYDGMNYNDYRAQIRKEMLISEVRNNEVRRRVTILPQEVDTLAKQIGSQNTQGT 172

Query: 269 IRTVEQLVFP------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
              + Q++ P             +  A +    LK G  F +LA         +  G+  
Sbjct: 173 ELNISQILLPLPENPTQQQVDDQEALARQLVGELKGGADFGKLAVTYSADPQALKGGNMG 232

Query: 317 KEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IAN 373
              I +  +L     S AKKGD    I    G+ I  V++++  S  +S  EV    I  
Sbjct: 233 WGKIEELPTLFSQTLSSAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVLARHILL 292

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
           +       ++ ++  +++   +  G +    +     +S D    +  G           
Sbjct: 293 KPSPILTDDQARQKIEQITADIKSGKT--TFAAAATQLSDDPGSANQGGDLDWASPEIDD 350

Query: 434 PYKEQLLFRV 443
           P     L ++
Sbjct: 351 PAFRDALLKL 360


>gi|261327012|emb|CBH09987.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Trypanosoma brucei gambiense DAL972]
          Length = 122

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLA 326
              V  ++      A EA + +K G+ F  +A +  +    S   LG  ++  +     +
Sbjct: 33  KVKVRHILCEKLSRALEALEKIKAGESFANVARDYSEDKARSGGDLGWVTRGAMVG-EFS 91

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +  F+L K G     +   FGY I  V + +
Sbjct: 92  EKAFALPKGGMTQEPVKTKFGYHIIFVEDKQ 122


>gi|238918641|ref|YP_002932155.1| peptidyl-prolyl cis-trans isomerase SurA [Edwardsiella ictaluri
           93-146]
 gi|238868209|gb|ACR67920.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 434

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 93/323 (28%), Gaps = 71/323 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S      K  + + +Q+ G  +         L  +IL+ L+     
Sbjct: 26  DKVVAIVDNGVVLESDVDGMMKS-VKLNAQQAGQQLP----DDATLRHQILERLIMDNVQ 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +GLE     +   I        + N  S     SRLA +G++ K Y       +
Sbjct: 81  LQMAKRMGLEISDSELDNAINGI----AQQNHISMQQLRSRLAADGLDYKTY----RDQI 132

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            +  ++                                    V +        +    ++
Sbjct: 133 RKEMLISEVRN-----------------------------NEVRSRVTILPQEVDALAKQ 163

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                       +S+IL  + E   + ++S                              
Sbjct: 164 IGSQNSGETAVNLSHILIPLPENPTQQQVSEA---------------------------- 195

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDF 338
           QK+A+   Q L +G  F +LA         +  G      + +  +L       AKKGD 
Sbjct: 196 QKQAESLIQQLHQGASFAKLAAAYSADPQALKGGEMGWGRLQELPTLFAEALQSAKKGDI 255

Query: 339 TPVIHGSFGYVIAHVSNIKPSFT 361
              I    G+ I  V++++    
Sbjct: 256 VGPIRSGVGFHILRVNDLRGDQA 278


>gi|171915197|ref|ZP_02930667.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 351

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 92/254 (36%), Gaps = 29/254 (11%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +  +   G        D  + F  +    D    + R    +   + A L  W E+    
Sbjct: 107 LWALTQPGNEHPTAAEDALQTFIKQFEIPD----SWRQRSKLQQMNEAQLQAWVEE---- 158

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------ 277
               E ++   + FD     +   ++ DE++A    +  +   PE  +   +        
Sbjct: 159 ----ETRQR--LAFDAEMSRRMARVTPDEIKAWLRDHATEVQIPERLSASHVFLSGHDKD 212

Query: 278 -PNQKEADEAFQS--LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIF 330
            P++     A+    +        LA E  +         SLG FS++ +P  + A+  F
Sbjct: 213 KPDRTAEITAYHRRIIAGETTLSALAGEVSEDGRSNKLGGSLGWFSRDRVP-ANFAEKAF 271

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +  K G+ +       G+ I  V   +P+   + +E + ++A  +   + S +  +  + 
Sbjct: 272 A-QKVGELSAPFRTELGWHIVLVHAKRPARPATLEEAQAEVAAHLTSVRRSAESAKLKEE 330

Query: 391 LEEFLALGTSMDEI 404
           + + + +   +D +
Sbjct: 331 ILKLIPVEKHLDRL 344


>gi|163750061|ref|ZP_02157304.1| survival protein surA [Shewanella benthica KT99]
 gi|161330118|gb|EDQ01100.1| survival protein surA [Shewanella benthica KT99]
          Length = 434

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/336 (11%), Positives = 105/336 (31%), Gaps = 59/336 (17%)

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  + S++A    L  ++++ L+      Q  + IGL     ++   I        K+ K
Sbjct: 59  GQSLPSDQA----LRTQVIERLIMTRLQMQMADRIGLHIGDLQLDQTIGNI----AKEQK 110

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN- 189
            + +    +++ EG+N  +Y +   + ++  ++        ++ S   +        E  
Sbjct: 111 LTVEQMRQKISNEGMNWGQYREQLREEITLGEIQRIQVQRRIQVSPQEISNLVNMIEEQG 170

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFE---------KYKDNYR-----------APEY 229
                  + +  +    +P++  L +            K   ++R           A E 
Sbjct: 171 LKQIEFQIGHILIEIPNNPTSEQLEKASNRANTVLDRVKDSGDFRRMAIAASAGPKALEG 230

Query: 230 KRISYILFDVHEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQ 274
               Y+  +         +SN +               +    +    +    +      
Sbjct: 231 GIWDYMNINEMPTLFAEVLSNAKKGDIIGPIRSGAGFHIIKVIDARGLQTKEVDEVRSRH 290

Query: 275 LVFP-----NQKEADEAFQ----SLKKG-KKFIQLAEEQGKSLSDISLG---SFSKEYIP 321
           ++       +++ A          ++ G   F  LA +  +     + G    ++   + 
Sbjct: 291 ILVKPSPILSEERAKAMLDKFVKQIRAGDADFAALARQYSEDPGSGAKGGELGWADPSVY 350

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             + + ++  L K  + +     S G+ I  +   +
Sbjct: 351 VPAFSQALNEL-KVNEISEPFRSSHGWHIVQLEERR 385



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 78/239 (32%), Gaps = 18/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-- 277
               YR    + I+       + +++I++S  E+       +E+        +  ++   
Sbjct: 126 NWGQYREQLREEITLGEIQRIQVQRRIQVSPQEISNLVNMIEEQGLKQIEFQIGHILIEI 185

Query: 278 ----------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                          A+     +K    F ++A         +  G +    I +  +L 
Sbjct: 186 PNNPTSEQLEKASNRANTVLDRVKDSGDFRRMAIAASAGPKALEGGIWDYMNINEMPTLF 245

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVK 385
             + S AKKGD    I    G+ I  V + +   T    EV+   I  +     + E+ K
Sbjct: 246 AEVLSNAKKGDIIGPIRSGAGFHIIKVIDARGLQTKEVDEVRSRHILVKPSPILSEERAK 305

Query: 386 EDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
               + +++  A       ++R+    S D       G+         +P   Q L  +
Sbjct: 306 AMLDKFVKQIRAGDADFAALARQY---SEDPGSGAKGGELGWADPSVYVPAFSQALNEL 361


>gi|312597019|pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon
           Cenarcheaum Symbiosum (Cspin)
          Length = 97

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPD 322
            +      ++   Q EA    + LK G+KF +LA+E     G +  D SLG F +  +  
Sbjct: 7   ADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVK 66

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
               D+ F L + G+ +  +   FGY +  
Sbjct: 67  P-FEDAAFRL-QVGEVSEPVKSEFGYHVIK 94


>gi|167644889|ref|YP_001682552.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter sp. K31]
 gi|167347319|gb|ABZ70054.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter sp. K31]
          Length = 330

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 58/160 (36%), Gaps = 6/160 (3%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            ++ + ++  Y + ++     E     Q++  +Q + +   + L  G  F  LA E+   
Sbjct: 129 AVNENAIRGLYAEQQKLSKRSEEIRARQILVASQADGEAVKKLLAAGASFDALAMERSTD 188

Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                +   LG F+ + +P           A+KG          G+ +  V + +    +
Sbjct: 189 PATRFNGGDLGYFTVDVMPAAYA--VALKDAQKGALVGPFQTEGGWAVLRVEDKRLEEPI 246

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
           + +  +  I   +   +  + +++     +  +  G   D
Sbjct: 247 TLEAARPQIVRFLTYDQVRDLLEKLRGAAKVEMLTGKPQD 286



 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 47/139 (33%), Gaps = 8/139 (5%)

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
            ++R  +     + D + +++ LA G S D ++          P   F G D+    V  
Sbjct: 150 EEIRARQILVASQADGEAVKKLLAAGASFDALAMERS----TDPATRFNGGDLGYFTVDV 205

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
           +P    +  +   K   +    T    +G +  +++++        LE     + +    
Sbjct: 206 MPAAYAVALKDAQKGALVGPFQT----EGGWAVLRVEDKRLEEPITLEAARPQIVRFLTY 261

Query: 493 VKTAEEVSSKANQLVLEYS 511
            +  + +        +E  
Sbjct: 262 DQVRDLLEKLRGAAKVEML 280


>gi|309806668|ref|ZP_07700664.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 03V1-b]
 gi|312870840|ref|ZP_07730945.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           3008A-a]
 gi|308166973|gb|EFO69156.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 03V1-b]
 gi|311093530|gb|EFQ51869.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           3008A-a]
          Length = 297

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 15/170 (8%)

Query: 221 KDNYRAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + N   PE  +  I   L      +    I+  + +  +++ + K        V+ ++  
Sbjct: 99  QQNGMTPEAYKESIQTNLLLQAALKDIKPITKAQEKKAWKEYQPK------VRVQHILVE 152

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY-----IPDVSLADSIFSLA 333
            +  A +  + L KG  F  LA++              + +       D    ++ F L 
Sbjct: 153 KEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGKIEPFDSSDTTLDADFKEAAFKLK 212

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
                   +   FGY I  +  IK     SFQ  K +I  ++    A ++
Sbjct: 213 TGEYTKKPVKTQFGYHIIKM--IKHPSKGSFQSHKSEIIARIYQKMAQDQ 260



 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 15/159 (9%)

Query: 483 LTDVKKDWKT----VKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-- 533
               KK WK     V+    +  K   A +++ E  K G +F+D+ K       T+    
Sbjct: 130 KAQEKKAWKEYQPKVRVQHILVEKEDTAKKVIEELGK-GASFKDLAKKYSTDTGTSKNAG 188

Query: 534 -INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQE-KDKF 590
            I   D+ +     D     F          P++    Y + K + +   G  Q  K + 
Sbjct: 189 KIEPFDSSDTTLDADFKEAAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGSFQSHKSEI 248

Query: 591 ISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627
           I+ + Q M +D  ++ SV+  +  + +V + DN ++  L
Sbjct: 249 IARIYQKMAQDQNVIKSVLGVVLKRANVNIKDNDLKNVL 287



 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 51/187 (27%), Gaps = 37/187 (19%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +L   F       AL +   S TV +    K+    F N                    +
Sbjct: 11  LLIAAFSGV----ALTATGCSKTVANYKGGKITQEDFYN--------------------K 46

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
            +     + IL N++   TL Q     G +    +V          +    K     F  
Sbjct: 47  VKKSPAGQAILANMIINRTLQQQ---YGSQVSKKKVNTA-------YDNARKQYGARFEM 96

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L + G+  + Y +     L    +          +     +A + Y     V +I++  
Sbjct: 97  VLQQNGMTPEAYKESIQTNLL---LQAALKDIKPITKAQEKKAWKEYQPKVRVQHILVEK 153

Query: 200 RHVPAIA 206
                  
Sbjct: 154 EDTAKKV 160


>gi|170768498|ref|ZP_02902951.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           albertii TW07627]
 gi|170122602|gb|EDS91533.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           albertii TW07627]
          Length = 428

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVEALAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E++A  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVEALAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|325279465|ref|YP_004252007.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter
           splanchnicus DSM 20712]
 gi|324311274|gb|ADY31827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter
           splanchnicus DSM 20712]
          Length = 445

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 66/478 (13%), Positives = 139/478 (29%), Gaps = 92/478 (19%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  VG + +  S   N++      + Q+   +++S    S     +IL+  +    L   
Sbjct: 28  VAIVGDEIILQSDIENAF------LQQQGQGIISS----SPDYKAEILEQQLVQKLLMAQ 77

Query: 103 IEDIGLEADHGRVWGEIARSPLFH--GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
            +   +      V   ++    F      ++   + +       G + +E  D     L 
Sbjct: 78  AQIDSIIVSDEEVENAVSSQIEFFISNIGSQERLEKYF------GKSIQEIKDDMRNPLK 131

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
              +                       + + V+ I +               +  +F+K 
Sbjct: 132 EQLITEQ-------------------MQQKIVEKIRITPS-----------EVRSYFKKI 161

Query: 221 KDNYR--APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             +     P+   +  I+          ++S  E +    +    +              
Sbjct: 162 PKDSLPDMPDRYELQQIVLKP-------DVSEAE-KERIREQLRSFRD------------ 201

Query: 279 NQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
                    Q LK  K F  LA    E   +     LG  SK+ + D + A++ FSL K 
Sbjct: 202 ---------QILKGEKTFNTLAVLYSEDASAPRGGELGYKSKKEL-DPAFAEAAFSL-KP 250

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G  + +I   +G+ I  + + +         V+  I          ++       + +++
Sbjct: 251 GKISKIIESEYGFHIIQLIDRQGEKI----NVRHIILQPKVSDTEKQEALNRLDTIRQYI 306

Query: 396 ALGT-SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
             G  + +E +                      +   A P     + R   K  P     
Sbjct: 307 TDGKMTFEEAAYYFSTDKKTRNNGGLFADPQTSEARIARPDIPGDMAREVNKMKPGEISQ 366

Query: 455 TVALPDGS---YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
                      Y  V+IKE  P     L++   + +   K  K  E++     +   +
Sbjct: 367 PFISHTNGQEEYKIVKIKEFYPRHKANLDDDWQNFELMLKREKQMEKLEKWIKEKQAD 424


>gi|188992953|ref|YP_001904963.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167734713|emb|CAP52923.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris]
          Length = 463

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/406 (11%), Positives = 101/406 (24%), Gaps = 68/406 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S    + +      + +   +   +      L +++L+ LV     
Sbjct: 32  DRIAAIVDEDVVLQSELDRAVRNVKSQYAGRDNQLPPDDV-----LQRQVLERLVLVKLQ 86

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               E  G+      +   IA       + N  S D    +LA +G+   ++       +
Sbjct: 87  VGRAEGSGIRVSDEELNRAIASI----AQQNGTSVDGLRQKLAADGMGYADFRASVRDEI 142

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL----- 213
               +   F    +  S   +D       +  +     L +  V      +   +     
Sbjct: 143 IVQRLRQSFAQSRISVSEGEVD--TALAQQATTGSQYHLAHILVGLPEGATAEQIATGQK 200

Query: 214 -----TQWFEKYKDNYRAPEYK-----------RISYILFDVHEKEKKIEISNDE----- 252
                    +K + ++ A   +            + +   D         I + +     
Sbjct: 201 KVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSLDEIPNAFAQLIRDMQPGQVA 260

Query: 253 ----------LQAEYEKNKEKYFSPEIRT----VEQLVF---------PNQKEADEAFQS 289
                     L    E         +          ++            + + D     
Sbjct: 261 GPLRGPSGFQLLKLVEMRDANAGGEKKVVTEYNARHILVRIGDNQTEAQAKAKIDTLRAR 320

Query: 290 LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           +  G  F   A+E  +  +       LG F  +          +  L   G  +      
Sbjct: 321 IVGGADFQATAKESSEDTNSRGQGGDLGWFPADAF-GPDFGKQVEGLT-DGAVSEPFRTQ 378

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            G+ I      + +   S +  +  I   +   K  E+     + L
Sbjct: 379 AGWHIVQRVGTRQTDV-SAENQRAQIRETIGRRKLEEEYNRYLQEL 423


>gi|296101217|ref|YP_003611363.1| peptidyl-prolyl cis-trans isomerase SurA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295055676|gb|ADF60414.1| peptidyl-prolyl cis-trans isomerase SurA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 428

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 56/369 (15%), Positives = 111/369 (30%), Gaps = 57/369 (15%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKITDEQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDV---------------VGMFVGGM----- 172
           + D   SRLA +GI+   Y +   K +  ++V               V      +     
Sbjct: 110 TLDQMRSRLAYDGISYSTYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQND 169

Query: 173 -------------RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                         P N   DQA     + R++     N      +A   +A        
Sbjct: 170 ASTELNLSHILIPLPENPTSDQAAEAESQARAIVEQARNGSDFGKLAITYSADQQALKGG 229

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQ 274
                R  E   I        +K   +      +     K  +     +           
Sbjct: 230 QMGWGRIQELPSIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARH 289

Query: 275 LVFP---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321
           ++            + +  +    +K GK  F   A+E  +     + G    ++   I 
Sbjct: 290 ILLKPSPIMTDDQARAKLQQIAADIKSGKTSFANAAKEFSQDPGSANQGGDLGWAAADIY 349

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           D +  D++  L  KG  +  +H SFG+ +  + + + +   +    K      +   K S
Sbjct: 350 DPAFRDALMKL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKTDAAQKDRAYRMLFNRKFS 407

Query: 382 EKVKEDYKR 390
           E+     + 
Sbjct: 408 EEAATWMQE 416



 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 17/237 (7%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278
             YR    K +       +E  +++ I   E+ A  ++   +  +     +  ++ P   
Sbjct: 126 STYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTELNLSHILIPLPE 185

Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328
                     + +A    +  + G  F +LA         +  G      I +  S+   
Sbjct: 186 NPTSDQAAEAESQARAIVEQARNGSDFGKLAITYSADQQALKGGQMGWGRIQELPSIFAQ 245

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKVKE 386
             S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       ++ + 
Sbjct: 246 ALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSPIMTDDQARA 305

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
             +++   +  G +    +   K  S D    +  G           P     L ++
Sbjct: 306 KLQQIAADIKSGKT--SFANAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDALMKL 360


>gi|323160075|gb|EFZ46037.1| chaperone surA [Escherichia coli E128010]
          Length = 428

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPEIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPEIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|301019757|ref|ZP_07183903.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
 gi|331661424|ref|ZP_08362348.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA143]
 gi|300399094|gb|EFJ82632.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
 gi|331061339|gb|EGI33302.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA143]
          Length = 428

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAK-RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++    +   +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVSNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVSNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|164685824|ref|ZP_01945801.2| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165918731|ref|ZP_02218817.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
           burnetii RSA 334]
 gi|212219488|ref|YP_002306275.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154]
 gi|164601340|gb|EAX33680.2| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165917559|gb|EDR36163.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
           burnetii RSA 334]
 gi|212013750|gb|ACJ21130.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154]
          Length = 321

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 106/352 (30%), Gaps = 80/352 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +  S   ++         Q+                K++LD L+     
Sbjct: 38  DQIVAVVNDEIITQSELNHALTAAKQQFMQR-----QISLPDQKTFKKQVLDQLIYQKLQ 92

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +   ++  +  +   +AR      + N  S      +L +EGI+ KE+     K L
Sbjct: 93  LQVAKHNQIKVTNNEINAAVARI----SQANHLSQTALKQKLTQEGISYKEFRSQLQKQL 148

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             + +                                     +      + + +  + ++
Sbjct: 149 IISKLQHQ---------------------------------ALQDTISINKSDIAAFQKQ 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +     + EY  I+ IL  +     + +I++                             
Sbjct: 176 HAGQIASTEY-HIATILIPLPASATQAQINHA---------------------------- 206

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           + +A    + L+KG  F    +          LG  S + +P V    ++  + K  + T
Sbjct: 207 KGKAALVLKQLQKGSSFETAMKMH---PGSADLGWRSAKELPQV-FVKTVLKM-KPNEVT 261

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             I    G+ I  + + +   TVS     + I   +   K  + +++   +L
Sbjct: 262 GPIQAPNGFHIVKLLDKEAKNTVS----DQQIQRIVYQQKVEKALQKWLTQL 309


>gi|313887408|ref|ZP_07821098.1| conserved hypothetical protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332300810|ref|YP_004442731.1| peptidyl-prolyl cis-trans isomerase [Porphyromonas asaccharolytica
           DSM 20707]
 gi|312923176|gb|EFR33995.1| conserved hypothetical protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332177873|gb|AEE13563.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 720

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 90/289 (31%), Gaps = 41/289 (14%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS-----GSSTVVSVGRQKVPFSSF 56
           L+ IR  +   +  I + V  + F+   + D L S S          + +  +KV +  +
Sbjct: 4   LQKIRNRAGLLI--IVVGVALLAFI---IGDGLRSGSSLLQDNKMVALKIDGKKVKYDEY 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                Q      ++    +  +    V +  ++   L++   L+Q  + IGL      V 
Sbjct: 59  QQLLTQRTEPYERQRQGKLTDQ--DRVQISNQLAQELIADYVLEQEAKAIGLRVTPAEVS 116

Query: 117 GEIARS--------PLFHGKDNKF--SHDVFVSRLAREGIN-----EKEYIDHY------ 155
             I             F  +        +   S ++   ++       E           
Sbjct: 117 ALIFGEGLPTSQWATQFFSQFGVDMGDPEQIRSIMSELDMDKIKSLPAEQQSMMISVRNQ 176

Query: 156 ----TKMLSRTDVVGMFVGGMRPSNLL--LDQAKRFYFENRSVDYIVLNNRHVP-AIADP 208
                K +    +       +  S  +  LD+        R+V  +   +  +P      
Sbjct: 177 WLETEKQIRTQRLSEKVNALLTRSYAINSLDEKYTVGLGTRTVAVVRTPSTILPNDQVTV 236

Query: 209 SNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDELQAE 256
           ++  +  +++ +K  Y  P E  +++Y    V   E     +  E+   
Sbjct: 237 TDQQVQAYYDSHKQLYAFPFEQAKVNYYSTLVRPSEADYAAAKAEVDTA 285



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/369 (13%), Positives = 119/369 (32%), Gaps = 40/369 (10%)

Query: 262 EKYFSPEIRTVEQLVFPNQK--EADEAFQSLKKG-KKFIQLAEEQGKSLSDISLGSF--- 315
           ++  +PE   V  +        +AD    +++ G     Q+           + G +   
Sbjct: 356 DRKQAPEEVKVNLIPLDTTNALKADSLIAAIQSGSATLAQIVATYSMDEQVKANGGYLIN 415

Query: 316 --SKEYIPDVSLADS-IFSLAKKGDFTPVIHG------SFGYVIAHVSNIKPSFTVSFQE 366
             S   +PD +  ++ +F +         I+           ++   +    S       
Sbjct: 416 QDSYTGMPDSTFTEAELFGMGLDTLTKTPINQFVKMERPGATLLVRRTAPTASVN----- 470

Query: 367 VKKDIAN-QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
               IA   + I  + E  +++  ++ E      S D++    +   + +   ++   + 
Sbjct: 471 -HYKIAQLTVPINFSEETFRKEQAKINEIFTSDKSFDKMMEDAQAAGLSVVRGEYV--NS 527

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVLT 484
               +A+IP   +++            D      +  Y+ V Q+++  PA  +  E+V  
Sbjct: 528 SSAALASIPNSREIISWALRSKAGAVSDKLFRCGENDYLVVAQVEKKYPAGFQPFEQVAD 587

Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
            V+      +  +++   A+ L  +  K   +       + +S+ T   I+ +   +   
Sbjct: 588 RVRDIVLMEQRGDQL---ASNLAGKQLK---SLNSYATEMQSSVDTLYNISYVTAPST-- 639

Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFK-----VTNSKVGPVQEKDKFI-SYLTQMM 598
               + +  +  +  +   P   G   VV +     V  S   P             Q M
Sbjct: 640 PSALVGKAMTTAIGQL-SAPFRAGTEVVVLQPISENVDASVTKPSPAATAQKRRSYGQQM 698

Query: 599 NKDLLDSVI 607
               +  +I
Sbjct: 699 AYRAMQELI 707


>gi|307825062|ref|ZP_07655283.1| SurA domain protein [Methylobacter tundripaludum SV96]
 gi|307733810|gb|EFO04666.1| SurA domain protein [Methylobacter tundripaludum SV96]
          Length = 434

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 61/424 (14%), Positives = 129/424 (30%), Gaps = 92/424 (21%)

Query: 9   SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
            RT V  +   +LF  FL+        +    + +  V    +               I 
Sbjct: 8   KRTIVVALLCNLLFGSFLV-------HAEVLDTIIAVVEEDVILERELQKEVAVIEQRI- 59

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
           Q+    +         L K++L+ ++      Q  E  G+      +    A       +
Sbjct: 60  QQSNAAIPPAYV----LRKQVLEKMIVDKLQRQLAEKAGITVSEEMLNSSAADI----AR 111

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
            N    + F + L  +GI+ + ++D+    +    + G  +GG                 
Sbjct: 112 RNNMDIEQFRAELEGQGISYQSFLDNMRNEIIINQLRGREIGG----------------- 154

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
                               ++  +  + E             + +IL  V E     EI
Sbjct: 155 ----------------RIKVTDREVEHYMETQDKIGEESTQYHLGHILIAVKEGASSTEI 198

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---EEQGK 305
                                            +A+    SL+ G+ F Q A    +   
Sbjct: 199 Q----------------------------KAMSKAEGIVGSLRGGQDFSQTAISDSDDAN 230

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK--PSFTVS 363
           +L    LG  +   +P     + I  + K+GD +  I    G+ I  +  +K   +  ++
Sbjct: 231 ALKGGDLGWRTLSEVP-TLFVNEIRQM-KQGDVSEPIRSPSGFHIVKMLELKGTDNHMIT 288

Query: 364 FQEVKKDI--ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR---EKIVSIDLPLV 418
             +V+  +   N++       +  +    L+  +A G     ++R    +K  ++    +
Sbjct: 289 KTKVRHILIKTNELVDDA---EANKRLLALKARIADGDDFAALARAHSDDKGSALKGGSL 345

Query: 419 DFAG 422
           D+ G
Sbjct: 346 DWVG 349



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 16/139 (11%)

Query: 271 TVEQLVFPNQKEADEAFQ---------SLKKGKKFIQLAE----EQGKSLSDISLGSFSK 317
            V  ++    +  D+A            +  G  F  LA     ++G +L   SL     
Sbjct: 291 KVRHILIKTNELVDDAEANKRLLALKARIADGDDFAALARAHSDDKGSALKGGSLDWVGP 350

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             +      +++  L    + +  +   FG+ I  V   +     S +  K  +   +R 
Sbjct: 351 GDLVKP-FEEAMVKLGIN-EVSDPVQTQFGWHIIQVLGRENKDDSS-EFKKNLVREAIRK 407

Query: 378 TKASEKVKEDYKRLEEFLA 396
            K  E+ +   +RL +   
Sbjct: 408 RKIEEETELWVRRLRDEAF 426


>gi|259501419|ref|ZP_05744321.1| peptidylprolyl isomerase PrsA1 [Lactobacillus iners DSM 13335]
 gi|302190860|ref|ZP_07267114.1| peptidylprolyl isomerase [Lactobacillus iners AB-1]
 gi|309805385|ref|ZP_07699434.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 09V1-c]
 gi|312875036|ref|ZP_07735054.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           2053A-b]
 gi|315653171|ref|ZP_07906096.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus iners ATCC
           55195]
 gi|325911618|ref|ZP_08174026.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners UPII
           143-D]
 gi|259167168|gb|EEW51663.1| peptidylprolyl isomerase PrsA1 [Lactobacillus iners DSM 13335]
 gi|308165312|gb|EFO67546.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 09V1-c]
 gi|311089431|gb|EFQ47857.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           2053A-b]
 gi|315489536|gb|EFU79173.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus iners ATCC
           55195]
 gi|325476604|gb|EGC79762.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners UPII
           143-D]
          Length = 297

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 15/170 (8%)

Query: 221 KDNYRAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + N   PE  +  I   L      +    I+  + +  +++ + K        V+ ++  
Sbjct: 99  QQNGMTPEAYKESIQTNLLLQAALKDIKPITKAQEKKAWKEYQPK------VRVQHILVE 152

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY-----IPDVSLADSIFSLA 333
            +  A +  + L KG  F  LA++              + +       D    ++ F L 
Sbjct: 153 KEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGKIEPFDSSDTTLDADFKEAAFKLK 212

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
                   +   FGY I  +  IK     SFQ  K +I  ++    A ++
Sbjct: 213 TGEYTKKPVKTQFGYHIIKM--IKHPSKGSFQSHKSEIIARIYQKMAQDQ 260



 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 15/159 (9%)

Query: 483 LTDVKKDWKT----VKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-- 533
               KK WK     V+    +  K   A +++ E  K G +F+D+ K       T+    
Sbjct: 130 KAQEKKAWKEYQPKVRVQHILVEKEDTAKKVIEELGK-GASFKDLAKKYSTDTGTSKNAG 188

Query: 534 -INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQE-KDKF 590
            I   D+ +     D     F          P++    Y + K + +   G  Q  K + 
Sbjct: 189 KIEPFDSSDTTLDADFKEAAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGSFQSHKSEI 248

Query: 591 ISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627
           I+ + Q M +D  ++ SV+  +  + +V + DN ++  L
Sbjct: 249 IARIYQKMAQDQNVIKSVLGVVLKRANVNIKDNDLKNVL 287



 Score = 40.4 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 51/187 (27%), Gaps = 37/187 (19%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +L   F       AL +   S TV +    K+    F N                    +
Sbjct: 11  LLIAAFSGV----ALTATGCSKTVANYKGGKITQEDFYN--------------------K 46

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
            +     + IL N++   TL Q     G +    +V          +    K     F  
Sbjct: 47  VKKSPAGQAILANMIINKTLQQQ---YGSQVSKKKVNTA-------YDNARKQYGARFEM 96

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L + G+  + Y +     L    +          +     +A + Y     V +I++  
Sbjct: 97  VLQQNGMTPEAYKESIQTNLL---LQAALKDIKPITKAQEKKAWKEYQPKVRVQHILVEK 153

Query: 200 RHVPAIA 206
                  
Sbjct: 154 EDTAKKV 160


>gi|169633358|ref|YP_001707094.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii SDF]
 gi|169152150|emb|CAP01052.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii]
          Length = 441

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/406 (12%), Positives = 128/406 (31%), Gaps = 71/406 (17%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           F+      V  V    +  S       +    +  +       E      L  ++LD L+
Sbjct: 31  FAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 85

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153
                 + ++  G++ D   +   + +      +    S + F  +L    I    Y + 
Sbjct: 86  LRQAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--IAPGTYENL 140

Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204
                + L+   +     +  ++ S+  +D      Q +        V ++ ++  +   
Sbjct: 141 RSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQE 200

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY------- 257
           + + +   +     +  D     ++   +  +       + +     EL A         
Sbjct: 201 VQNVA-KEVRSQLAQNNDLNALKKFSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQ 259

Query: 258 -------------------EKNKEKYFSPEIRTVEQLVFPNQ--------KEADEAFQSL 290
                              ++N++K   P+ +T   L+ P++        +  D  ++ L
Sbjct: 260 TTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRL 319

Query: 291 KKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           K G+ F  LA     + G +    SLG  +   +        +  +   G+ +      F
Sbjct: 320 KAGEDFATLAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQF 377

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           G+ I  V++ +           KD+ ++ +   A + + E     E
Sbjct: 378 GWHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 413



 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 39/285 (13%)

Query: 144 EGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
           +G+ E   E      ++  +  +    +  +      L+Q K++       D   LN   
Sbjct: 54  QGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILRQAQLEQVKKYGI---KPDEKSLNEAV 110

Query: 202 VPAIADPSNAVLTQWFEK-------YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
           +   +   +  L  + +K         +N R+   + ++       +   +I+IS+ ++ 
Sbjct: 111 LKVASQSGSKSLEAFQQKLDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVD 170

Query: 255 AEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
              +  + +        V  +          Q  A E    L +      L ++   +  
Sbjct: 171 NFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQNNDLNAL-KKFSTATV 229

Query: 309 DISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN------------ 355
            +         + D+    +   +  + G  T +I    G  +  +              
Sbjct: 230 KVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQ 289

Query: 356 -------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                  I+PS  VS +  K+ I +  +  KA E           
Sbjct: 290 YQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 334


>gi|237704199|ref|ZP_04534680.1| surA [Escherichia sp. 3_2_53FAA]
 gi|226902111|gb|EEH88370.1| surA [Escherichia sp. 3_2_53FAA]
          Length = 428

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/387 (13%), Positives = 123/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S  + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PSSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPSSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|186470963|ref|YP_001862281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
 gi|184197272|gb|ACC75235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
          Length = 259

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 72/211 (34%), Gaps = 31/211 (14%)

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD- 284
            P    +  I   +    +  E      +  Y  N  ++   E      ++F      D 
Sbjct: 58  TPGTATVDAIERLLEHALRVPEPDEHACRRYYAANPGRHAPGERVHARHILFAVTPGVDI 117

Query: 285 EAFQSLKK-------------GKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADS 328
           EA + L +             G++F + A+E        +   LG F+        LA  
Sbjct: 118 EALRRLAEASLVDLRCDAVEHGERFARAAKELSNCPTGDAGGELGWFTAAECV-PELARE 176

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           +F L   G    ++   FG+ I  V   + + T  F+ V+  IA  +R            
Sbjct: 177 LFGLPYVGVLPRLVATRFGFHIVDVLARERANTPPFETVRAAIAQTLRQ-------HAFA 229

Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
             L ++++L      ++ + ++  ++L    
Sbjct: 230 NALRQYVSL------LAAQAELCGVELDGTA 254


>gi|324997548|ref|ZP_08118660.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudonocardia sp.
           P1]
          Length = 475

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 78/199 (39%), Gaps = 7/199 (3%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            ++++             ++++ +++  +   ++    PE R V  +V  ++  A +   
Sbjct: 276 KRQMAAAQLFQQVTADIPQVTDADVETAFGDRRDALAMPERRAVSNIVVRDEAAAQQILG 335

Query: 289 SLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            L+ G+ F  +A  +        +  ++G+ +   + +   AD+ F  A+       +  
Sbjct: 336 DLQGGRPFADVARARSADAATREAGGAIGTLAAAQL-EKPFADAAFG-AEPNVPFGPVKT 393

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDE 403
             G+ +  VS ++ +     Q V++ +  +++  ++++  +     RL++          
Sbjct: 394 QHGWNVGVVSEVQAAVPADLQTVREPLRQRLQGERSADAWQAFLGNRLDDAGVRYNDAYV 453

Query: 404 ISRREKIVSIDLPLVDFAG 422
            +  + + +    L    G
Sbjct: 454 PADPDGLPADPSALTPSPG 472


>gi|320449245|ref|YP_004201341.1| peptidyl-prolyl cis-trans isomerase, PpiC family [Thermus
           scotoductus SA-01]
 gi|320149414|gb|ADW20792.1| peptidyl-prolyl cis-trans isomerase, PpiC family [Thermus
           scotoductus SA-01]
          Length = 605

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 69/656 (10%), Positives = 170/656 (25%), Gaps = 144/656 (21%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG- 72
             I   +L + F    +   L     +        + V + +    ++ +L  +      
Sbjct: 9   ITILFGLLALAFA---VGAILLFTPQAGQQAR--GKPVLWVNGKAVYELDLLRLQGNDPL 63

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
           +  N +      +D   L+ ++    L Q      +      V  E+ R      +    
Sbjct: 64  YAANPQGLLKTLVDTHFLEQVILTEALKQDAAR--IRVGSAEVRKEVDRI---REQFGLK 118

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
               +   L + G  + +        L     +                           
Sbjct: 119 EKKAYEQFLNQVGYTDAQLRSEIKTQLQIQKRLEQIRSA--------------------- 157

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                        A P+   +  +FE ++++Y+     +                     
Sbjct: 158 -------------AKPTPEEVRFYFEVHQEDYKGEPRLK--------------------- 183

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK--SLSDI 310
                                Q+V    K A E     K G+ F  LA++  K  +    
Sbjct: 184 -------------------ARQIVVDEAKLAAELLAKAKAGEDFAALAKQYSKVGAEQGG 224

Query: 311 SLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +LG+   E  P           +A+++F+    G   PV  G   Y +  V    P+   
Sbjct: 225 ALGAGPGESEPKPVTKVVFPDKVAEAVFAQKGPGLVGPVEAG-GRYYLVKVEEYLPAKVP 283

Query: 363 SFQEVKKDIANQMRITK---ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
           +F+E+K+ +    +  K   A E   E+ ++  +      S             +  ++ 
Sbjct: 284 TFEEIKEQVEKDAQAAKGNGALEAYLENLRQKAQVRFAEDSPFSYKNLPVAKVNEQEILL 343

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
                            +Q L  +  +        ++   +      +         +  
Sbjct: 344 AQVLQPVFSNQQTAALIQQGLGDLAVQFFLPQTLESLIERELLVEAAKKSG------KPF 397

Query: 480 EEVLTDVKKDW----------KTVKTAE----------------------EVSSKANQLV 507
                 + + +             +                         +  +KA    
Sbjct: 398 IGSKDQIAQAYLLYETRGLTATEEEARRFYAENPALFTIPASAEVTGVVFKAEAKAKAFR 457

Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG-ISQVF-SGPVEMVKCFPI 565
               + G + + + K    ++     ++              + + F  GP+  V     
Sbjct: 458 EAALRGG-DLQALAKAQEGTVTEYGTVSPNQLPAVLDRLVFKVKETFPKGPMGEVSEVVK 516

Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVT 617
               ++ V  V N K   ++  ++ +    + +     +    +++  L+    + 
Sbjct: 517 LEDGTFAVLLVKNRKPEVLKPFNEVVEEAKERVILSKRQQKGQALVQELRKAAKIE 572



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 77/192 (40%), Gaps = 12/192 (6%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
             + +E +  Y +N   +  P    V  +VF  + +A    ++  +G     LA+ Q  +
Sbjct: 417 TATEEEARRFYAENPALFTIPASAEVTGVVFKAEAKAKAFREAALRGGDLQALAKAQEGT 476

Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKK------GDFTPVIHGSFG-YVIAHVSNIKPS 359
           ++    G+ S   +P V L   +F + +       G+ + V+    G + +  V N KP 
Sbjct: 477 VT--EYGTVSPNQLPAV-LDRLVFKVKETFPKGPMGEVSEVVKLEDGTFAVLLVKNRKPE 533

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL--PL 417
               F EV ++   ++ ++K  +K +   + L +   +   + ++       + +   P 
Sbjct: 534 VLKPFNEVVEEAKERVILSKRQQKGQALVQELRKAAKIENRLSQVLAELTPKTQEPAKPP 593

Query: 418 VDFAGKDVKGKE 429
              A K+   K 
Sbjct: 594 TQEAPKEAPAKP 605



 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 13/168 (7%)

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
           K +   K   E    G  +  +++ ++    +   V         +  A +      +  
Sbjct: 448 KAEAKAKAFREAALRGGDLQALAKAQEGTVTEYGTVS------PNQLPAVLDRLVFKVKE 501

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
            F K         V L DG++  + +K   P   +   EV+ + K+     K  +    K
Sbjct: 502 TFPKGPMGEVSEVVKLEDGTFAVLLVKNRKPEVLKPFNEVVEEAKERVILSKRQQ----K 557

Query: 503 ANQLVLEYSKEGKN---FRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
              LV E  K  K       +   L        +    +   +     
Sbjct: 558 GQALVQELRKAAKIENRLSQVLAELTPKTQEPAKPPTQEAPKEAPAKP 605


>gi|301631501|ref|XP_002944836.1| PREDICTED: probable parvulin-type peptidyl-prolyl cis-trans
           isomerase-like [Xenopus (Silurana) tropicalis]
          Length = 262

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQ 298
            + +KK  +S+ E+QAEY+K        E + V  ++   + EA     S+K+G  KF  
Sbjct: 105 ADYQKKNPVSDAEIQAEYDKFVASNSGKEYK-VSHILVEKEDEAKSIIASIKQGSAKFED 163

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +A++Q K     + G       P+       +++  L K       +   FG+ +  + +
Sbjct: 164 IAKKQSKDPGSGARGGDLDWANPNSYVSEFTEAMLKLKKGEMTAEPVKSQFGWHVIRLDD 223

Query: 356 IKPSFTVSFQEVKK 369
            + +     +EVK 
Sbjct: 224 ERQAQLPKQEEVKP 237


>gi|21230267|ref|NP_636184.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769740|ref|YP_244502.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|81304306|sp|Q4UR41|SURA_XANC8 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|81796311|sp|Q8PCE1|SURA_XANCP RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|21111813|gb|AAM40108.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575072|gb|AAY50482.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 463

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/406 (11%), Positives = 101/406 (24%), Gaps = 68/406 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S    + +      + +   +   +      L +++L+ LV     
Sbjct: 32  DRIAAIVDEDVVLQSELDRAVRNVKSQYAGRDNQLPPDDV-----LQRQVLERLVLVKLQ 86

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               E  G+      +   IA       + N  S D    +LA +G+   ++       +
Sbjct: 87  VGRAEGSGIRVSDEELNRAIASI----AQQNGTSVDGLRQKLAADGMGYADFRASVRDEI 142

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL----- 213
               +   F    +  S   +D       +  +     L +  V      +   +     
Sbjct: 143 IVQRLRQSFAQSRISVSEGEVD--TALAQQATTGSQYHLAHILVGLPEGATAEQIATGQK 200

Query: 214 -----TQWFEKYKDNYRAPEYK-----------RISYILFDVHEKEKKIEISNDE----- 252
                    +K + ++ A   +            + +   D         I + +     
Sbjct: 201 KVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSLDEIPNAFAQLIRDMQPGQVA 260

Query: 253 ----------LQAEYEKNKEKYFSPEIRT----VEQLVF---------PNQKEADEAFQS 289
                     L    E         +          ++            + + D     
Sbjct: 261 GPLRGPSGFQLLKLVEMRDANAGGEKKVLTEYNARHILVRIGDNQTEAQAKAKIDTLRAR 320

Query: 290 LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           +  G  F   A+E  +  +       LG F  +          +  L   G  +      
Sbjct: 321 IVGGADFQATAKESSEDTNSRGQGGDLGWFPADAF-GPDFGKQVEGLT-DGAVSEPFRTQ 378

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            G+ I      + +   S +  +  I   +   K  E+     + L
Sbjct: 379 AGWHIVQRVGTRQTDV-SAENQRAQIRETIGRRKLEEEYNRYLQEL 423


>gi|218547503|ref|YP_002381294.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia fergusonii
           ATCC 35469]
 gi|218355044|emb|CAQ87650.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia
           fergusonii ATCC 35469]
 gi|324112544|gb|EGC06521.1| ppic-type ppiase domain-containing protein [Escherichia fergusonii
           B253]
          Length = 428

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 110/369 (29%), Gaps = 57/369 (15%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    L Q  + +G++    ++   IA       K N  
Sbjct: 54  AQAGQQLPDDATLRHQILERLIMDQILLQMGQKMGVKISDEQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191
           + D   SRLA +G+N   Y +   K +  ++V        +      ++   +       
Sbjct: 110 TLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRISILPQEVESLAQQVGNQND 169

Query: 192 VDY------IVLNNRHVPAIADPSNAVLTQW------------------FEKYKDNY--- 224
                    I++     P+    + A                       +   +      
Sbjct: 170 ASTELNLSHILIPLPENPSSDQVNEAESQARAIVDQARNGADFGKLAISYSADQQALKGG 229

Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQ 274
                R  E   I        +K   +      +     K  +     +           
Sbjct: 230 QMGWGRIQELPGIFAQALSTAKKGDVVGPIRSGVGFHILKVNDLRGGSQNISVTEVHARH 289

Query: 275 LVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321
           ++         ++A    ++    +K GK  F   A+E  +     + G    ++   I 
Sbjct: 290 ILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATADIF 349

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           D +  D++  L  KG  +  +H SFG+ +  + + + +   +    K      +   K S
Sbjct: 350 DPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKTDAAQKDRAYRMLMNRKFS 407

Query: 382 EKVKEDYKR 390
           E+     + 
Sbjct: 408 EEAASWMQE 416



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 77/239 (32%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRISILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         +  G      I +   + 
Sbjct: 184 PENPSSDQVNEAESQARAIVDQARNGADFGKLAISYSADQQALKGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-VSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++     +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDVVGPIRSGVGFHILKVNDLRGGSQNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRL 360


>gi|333010545|gb|EGK29978.1| chaperone surA [Shigella flexneri VA-6]
          Length = 428

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|15799738|ref|NP_285750.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           EDL933]
 gi|15829312|ref|NP_308085.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. Sakai]
 gi|16128047|ref|NP_414595.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str.
           K-12 substr. MG1655]
 gi|24111499|ref|NP_706009.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri 2a str.
           301]
 gi|26245979|ref|NP_752018.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli CFT073]
 gi|30061620|ref|NP_835791.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri 2a str.
           2457T]
 gi|74310672|ref|YP_309091.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella sonnei Ss046]
 gi|82542659|ref|YP_406606.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii Sb227]
 gi|89106937|ref|AP_000717.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K-12
           substr. W3110]
 gi|91209115|ref|YP_539101.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UTI89]
 gi|110804119|ref|YP_687639.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri 5 str.
           8401]
 gi|117622343|ref|YP_851256.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli APEC O1]
 gi|157155530|ref|YP_001461225.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli E24377A]
 gi|168751687|ref|ZP_02776709.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4113]
 gi|168756884|ref|ZP_02781891.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4401]
 gi|168762820|ref|ZP_02787827.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4501]
 gi|168766748|ref|ZP_02791755.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4486]
 gi|168776976|ref|ZP_02801983.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4196]
 gi|168781757|ref|ZP_02806764.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4076]
 gi|168785111|ref|ZP_02810118.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC869]
 gi|170021589|ref|YP_001726543.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli ATCC
           8739]
 gi|170079716|ref|YP_001729036.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170682162|ref|YP_001742174.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli SMS-3-5]
 gi|188493538|ref|ZP_03000808.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli 53638]
 gi|191169148|ref|ZP_03030907.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli B7A]
 gi|191174100|ref|ZP_03035614.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli F11]
 gi|193066223|ref|ZP_03047276.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli E22]
 gi|193070992|ref|ZP_03051921.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli E110019]
 gi|194434546|ref|ZP_03066804.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Shigella
           dysenteriae 1012]
 gi|194439697|ref|ZP_03071767.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli 101-1]
 gi|195937729|ref|ZP_03083111.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. EC4024]
 gi|208807378|ref|ZP_03249715.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4206]
 gi|208812243|ref|ZP_03253572.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4045]
 gi|208818190|ref|ZP_03258510.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398433|ref|YP_002268663.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4115]
 gi|209917245|ref|YP_002291329.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli SE11]
 gi|215485217|ref|YP_002327648.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O127:H6
           str. E2348/69]
 gi|217325032|ref|ZP_03441116.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. TW14588]
 gi|218552638|ref|YP_002385551.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli IAI1]
 gi|218556994|ref|YP_002389907.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli S88]
 gi|218687931|ref|YP_002396143.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli ED1a]
 gi|218693525|ref|YP_002401192.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 55989]
 gi|218698475|ref|YP_002406104.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli IAI39]
 gi|218703314|ref|YP_002410833.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UMN026]
 gi|227885046|ref|ZP_04002851.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 83972]
 gi|238899458|ref|YP_002925254.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           BW2952]
 gi|253774915|ref|YP_003037746.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037470|ref|ZP_04871547.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|254160178|ref|YP_003043286.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B str.
           REL606]
 gi|254791192|ref|YP_003076029.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. TW14359]
 gi|256020107|ref|ZP_05433972.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella sp. D9]
 gi|256025370|ref|ZP_05439235.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia sp. 4_1_40B]
 gi|260842290|ref|YP_003220068.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str.
           12009]
 gi|260853267|ref|YP_003227158.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str.
           11368]
 gi|260866207|ref|YP_003232609.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str.
           11128]
 gi|261226813|ref|ZP_05941094.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255216|ref|ZP_05947749.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291280879|ref|YP_003497697.1| Chaperone surA precursor [Escherichia coli O55:H7 str. CB9615]
 gi|293403128|ref|ZP_06647225.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
           FVEC1412]
 gi|293408148|ref|ZP_06651988.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B354]
 gi|293417931|ref|ZP_06660553.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B185]
 gi|293476717|ref|ZP_06665125.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B088]
 gi|297516939|ref|ZP_06935325.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli OP50]
 gi|298378656|ref|ZP_06988540.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
           FVEC1302]
 gi|300900923|ref|ZP_07119058.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
 gi|300919606|ref|ZP_07136098.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
 gi|300928648|ref|ZP_07144167.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
 gi|300948657|ref|ZP_07162741.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
 gi|300956983|ref|ZP_07169235.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
 gi|300981029|ref|ZP_07175306.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
 gi|300984196|ref|ZP_07176924.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
 gi|301024798|ref|ZP_07188436.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
 gi|301048439|ref|ZP_07195466.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
 gi|301648380|ref|ZP_07248116.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
 gi|306815347|ref|ZP_07449496.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli NC101]
 gi|307136656|ref|ZP_07496012.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli H736]
 gi|307311493|ref|ZP_07591135.1| Peptidylprolyl isomerase [Escherichia coli W]
 gi|309796042|ref|ZP_07690454.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
 gi|312966176|ref|ZP_07780402.1| chaperone surA [Escherichia coli 2362-75]
 gi|312970148|ref|ZP_07784330.1| chaperone surA [Escherichia coli 1827-70]
 gi|331640505|ref|ZP_08341653.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli H736]
 gi|331645163|ref|ZP_08346274.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli M605]
 gi|331661095|ref|ZP_08362027.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA206]
 gi|331671573|ref|ZP_08372371.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA280]
 gi|331681439|ref|ZP_08382076.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli H299]
 gi|332281260|ref|ZP_08393673.1| survival protein surA [Shigella sp. D9]
 gi|81174735|sp|P0ABZ8|SURA_ECO57 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|81174736|sp|P0ABZ7|SURA_ECOL6 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|81174737|sp|P0ABZ6|SURA_ECOLI RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; AltName: Full=Survival protein A;
           Flags: Precursor
 gi|81174738|sp|P0ABZ9|SURA_SHIFL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|121956477|sp|Q326I0|SURA_SHIBS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|121956482|sp|Q3Z5V6|SURA_SHISS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|122070645|sp|Q1RGE4|SURA_ECOUT RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|12512748|gb|AAG54358.1|AE005182_7 survival protein [Escherichia coli O157:H7 str. EDL933]
 gi|26106376|gb|AAN78562.1|AE016755_62 Survival protein surA precursor [Escherichia coli CFT073]
 gi|1786238|gb|AAC73164.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str.
           K-12 substr. MG1655]
 gi|13359514|dbj|BAB33481.1| survival protein [Escherichia coli O157:H7 str. Sakai]
 gi|24050252|gb|AAN41716.1| survival protein [Shigella flexneri 2a str. 301]
 gi|30039862|gb|AAP15596.1| survival protein [Shigella flexneri 2a str. 2457T]
 gi|73854149|gb|AAZ86856.1| survival protein [Shigella sonnei Ss046]
 gi|81244070|gb|ABB64778.1| survival protein [Shigella boydii Sb227]
 gi|85674304|dbj|BAB96620.2| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K12
           substr. W3110]
 gi|91070689|gb|ABE05570.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli UTI89]
 gi|110613667|gb|ABF02334.1| survival protein [Shigella flexneri 5 str. 8401]
 gi|115511467|gb|ABI99541.1| survival protein [Escherichia coli APEC O1]
 gi|157077560|gb|ABV17268.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli E24377A]
 gi|169756517|gb|ACA79216.1| SurA domain [Escherichia coli ATCC 8739]
 gi|169887551|gb|ACB01258.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170519880|gb|ACB18058.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli SMS-3-5]
 gi|187767718|gb|EDU31562.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4196]
 gi|188014319|gb|EDU52441.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4113]
 gi|188488737|gb|EDU63840.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli 53638]
 gi|189000667|gb|EDU69653.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4076]
 gi|189356117|gb|EDU74536.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4401]
 gi|189363909|gb|EDU82328.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4486]
 gi|189366936|gb|EDU85352.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4501]
 gi|189375016|gb|EDU93432.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC869]
 gi|190900823|gb|EDV60613.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli B7A]
 gi|190905594|gb|EDV65219.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli F11]
 gi|192926148|gb|EDV80789.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli E22]
 gi|192955722|gb|EDV86196.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli E110019]
 gi|194417199|gb|EDX33310.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Shigella
           dysenteriae 1012]
 gi|194421382|gb|EDX37399.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli 101-1]
 gi|208727179|gb|EDZ76780.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4206]
 gi|208733520|gb|EDZ82207.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4045]
 gi|208738313|gb|EDZ85995.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4042]
 gi|209159833|gb|ACI37266.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4115]
 gi|209746874|gb|ACI71744.1| survival protein [Escherichia coli]
 gi|209746876|gb|ACI71745.1| survival protein [Escherichia coli]
 gi|209746878|gb|ACI71746.1| survival protein [Escherichia coli]
 gi|209746880|gb|ACI71747.1| survival protein [Escherichia coli]
 gi|209746882|gb|ACI71748.1| survival protein [Escherichia coli]
 gi|209910504|dbj|BAG75578.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE11]
 gi|215263289|emb|CAS07604.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217321253|gb|EEC29677.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. TW14588]
 gi|218350257|emb|CAU95940.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           55989]
 gi|218359406|emb|CAQ96945.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           IAI1]
 gi|218363763|emb|CAR01424.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli S88]
 gi|218368461|emb|CAR16197.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           IAI39]
 gi|218425495|emb|CAR06277.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           ED1a]
 gi|218430411|emb|CAR11278.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           UMN026]
 gi|222031887|emb|CAP74625.1| chaperone surA [Escherichia coli LF82]
 gi|226840576|gb|EEH72578.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|227837875|gb|EEJ48341.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 83972]
 gi|238861990|gb|ACR63988.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           BW2952]
 gi|242375892|emb|CAQ30573.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           BL21(DE3)]
 gi|253325959|gb|ACT30561.1| Peptidylprolyl isomerase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972079|gb|ACT37750.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli B
           str. REL606]
 gi|253976288|gb|ACT41958.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           BL21(DE3)]
 gi|254590592|gb|ACT69953.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           O157:H7 str. TW14359]
 gi|257751916|dbj|BAI23418.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str.
           11368]
 gi|257757437|dbj|BAI28934.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str.
           12009]
 gi|257762563|dbj|BAI34058.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str.
           11128]
 gi|260450738|gb|ACX41160.1| SurA domain protein [Escherichia coli DH1]
 gi|281177270|dbj|BAI53600.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE15]
 gi|281599414|gb|ADA72398.1| Chaperone surA precursor [Shigella flexneri 2002017]
 gi|284919836|emb|CBG32891.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase)
           [Escherichia coli 042]
 gi|290760752|gb|ADD54713.1| Chaperone surA precursor [Escherichia coli O55:H7 str. CB9615]
 gi|291321170|gb|EFE60612.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B088]
 gi|291430043|gb|EFF03057.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
           FVEC1412]
 gi|291430649|gb|EFF03647.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B185]
 gi|291472399|gb|EFF14881.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B354]
 gi|294492943|gb|ADE91699.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli IHE3034]
 gi|298280990|gb|EFI22491.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
           FVEC1302]
 gi|299880288|gb|EFI88499.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
 gi|300299732|gb|EFJ56117.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
 gi|300306726|gb|EFJ61246.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
 gi|300316273|gb|EFJ66057.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
 gi|300355586|gb|EFJ71456.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
 gi|300409065|gb|EFJ92603.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
 gi|300413352|gb|EFJ96662.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
 gi|300451883|gb|EFK15503.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
 gi|300463317|gb|EFK26810.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
 gi|301073515|gb|EFK88321.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
 gi|305851009|gb|EFM51464.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli NC101]
 gi|306908472|gb|EFN38970.1| Peptidylprolyl isomerase [Escherichia coli W]
 gi|307551900|gb|ADN44675.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli ABU 83972]
 gi|307629629|gb|ADN73933.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UM146]
 gi|308120284|gb|EFO57546.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
 gi|309700266|emb|CBI99554.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase)
           [Escherichia coli ETEC H10407]
 gi|310337646|gb|EFQ02757.1| chaperone surA [Escherichia coli 1827-70]
 gi|312289419|gb|EFR17313.1| chaperone surA [Escherichia coli 2362-75]
 gi|312944661|gb|ADR25488.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313646568|gb|EFS11029.1| chaperone surA [Shigella flexneri 2a str. 2457T]
 gi|315059279|gb|ADT73606.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli W]
 gi|315134749|dbj|BAJ41908.1| chaperone surA precursor [Escherichia coli DH1]
 gi|315285117|gb|EFU44562.1| PPIC-type PPIASE domain protein [Escherichia coli MS 110-3]
 gi|315298427|gb|EFU57682.1| PPIC-type PPIASE domain protein [Escherichia coli MS 16-3]
 gi|315616170|gb|EFU96789.1| chaperone surA [Escherichia coli 3431]
 gi|320190424|gb|EFW65074.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. EC1212]
 gi|320197500|gb|EFW72114.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
           WV_060327]
 gi|320200427|gb|EFW75013.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli EC4100B]
 gi|320647458|gb|EFX16253.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H-
           str. 493-89]
 gi|320652792|gb|EFX21030.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H-
           str. H 2687]
 gi|320658181|gb|EFX25910.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663490|gb|EFX30774.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O55:H7
           str. USDA 5905]
 gi|323166105|gb|EFZ51884.1| chaperone surA [Shigella sonnei 53G]
 gi|323171213|gb|EFZ56861.1| chaperone surA [Escherichia coli LT-68]
 gi|323176362|gb|EFZ61954.1| chaperone surA [Escherichia coli 1180]
 gi|323181750|gb|EFZ67163.1| chaperone surA [Escherichia coli 1357]
 gi|323190264|gb|EFZ75540.1| chaperone surA [Escherichia coli RN587/1]
 gi|323380164|gb|ADX52432.1| SurA domain protein [Escherichia coli KO11]
 gi|323935106|gb|EGB31473.1| ppic-type ppiase domain-containing protein [Escherichia coli E1520]
 gi|323939725|gb|EGB35927.1| ppic-type ppiase domain-containing protein [Escherichia coli E482]
 gi|323945684|gb|EGB41732.1| ppic-type ppiase domain-containing protein [Escherichia coli H120]
 gi|323950947|gb|EGB46824.1| ppic-type ppiase domain-containing protein [Escherichia coli H252]
 gi|323955251|gb|EGB51024.1| ppic-type ppiase domain-containing protein [Escherichia coli H263]
 gi|323960002|gb|EGB55648.1| ppic-type ppiase domain-containing protein [Escherichia coli H489]
 gi|323970727|gb|EGB65981.1| ppic-type ppiase domain-containing protein [Escherichia coli TA007]
 gi|324008401|gb|EGB77620.1| PPIC-type PPIASE domain protein [Escherichia coli MS 57-2]
 gi|324012311|gb|EGB81530.1| PPIC-type PPIASE domain protein [Escherichia coli MS 60-1]
 gi|324017678|gb|EGB86897.1| PPIC-type PPIASE domain protein [Escherichia coli MS 117-3]
 gi|324118405|gb|EGC12299.1| ppic-type ppiase domain-containing protein [Escherichia coli E1167]
 gi|326345227|gb|EGD68970.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. 1125]
 gi|326346920|gb|EGD70654.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. 1044]
 gi|331040251|gb|EGI12458.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli H736]
 gi|331045920|gb|EGI18039.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli M605]
 gi|331052137|gb|EGI24176.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA206]
 gi|331071418|gb|EGI42775.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA280]
 gi|331081660|gb|EGI52821.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli H299]
 gi|332097929|gb|EGJ02902.1| chaperone surA [Shigella dysenteriae 155-74]
 gi|332098944|gb|EGJ03895.1| chaperone surA [Shigella boydii 3594-74]
 gi|332103612|gb|EGJ06958.1| survival protein surA [Shigella sp. D9]
 gi|332341385|gb|AEE54719.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UMNK88]
 gi|332762289|gb|EGJ92556.1| chaperone surA [Shigella flexneri 2747-71]
 gi|332762614|gb|EGJ92879.1| chaperone surA [Shigella flexneri 4343-70]
 gi|332764896|gb|EGJ95124.1| chaperone surA [Shigella flexneri K-671]
 gi|332768842|gb|EGJ99021.1| peptidyl-prolyl cis-trans isomerase [Shigella flexneri 2930-71]
 gi|333009456|gb|EGK28912.1| chaperone surA [Shigella flexneri K-218]
 gi|333011437|gb|EGK30851.1| chaperone surA [Shigella flexneri K-272]
 gi|333021676|gb|EGK40925.1| chaperone surA [Shigella flexneri K-227]
 gi|333022418|gb|EGK41656.1| chaperone surA [Shigella flexneri K-304]
          Length = 428

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|164686191|ref|ZP_02210221.1| hypothetical protein CLOBAR_02629 [Clostridium bartlettii DSM
           16795]
 gi|164601793|gb|EDQ95258.1| hypothetical protein CLOBAR_02629 [Clostridium bartlettii DSM
           16795]
          Length = 198

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 78/201 (38%), Gaps = 33/201 (16%)

Query: 214 TQWFEKYKDNYRAPEYK---RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
            ++FEK    +   E K   RI   L      E+   +S DE +  +EKNK  Y      
Sbjct: 3   KEYFEK----FNLTEEKLKQRIKKELMGAKYLEEYSNVSEDEARNYFEKNKNDYK---QI 55

Query: 271 TVEQLVF----------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DIS 311
               ++                  N+K A+E  +    G+ F  LA+E     S      
Sbjct: 56  RASHILISNYDSNNKEVSDDKKEENKKTAEEVLKLALDGEDFATLAKEYSDDSSASKGGD 115

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           LG F+++ +   + + + FSL     +  V+  S GY I   +  K        +VK D+
Sbjct: 116 LGYFTQDEMV-SAFSKAAFSLKTGEIYNKVVETSSGYHIIKKTGEKDQDFD---DVKDDL 171

Query: 372 ANQMRITKASEKVKEDYKRLE 392
              +  TK S  +++ Y + +
Sbjct: 172 IKTLESTKQSTLMQDLYTKYD 192


>gi|119503111|ref|ZP_01625196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine gamma
           proteobacterium HTCC2080]
 gi|119461457|gb|EAW42547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine gamma
           proteobacterium HTCC2080]
          Length = 297

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 102/252 (40%), Gaps = 27/252 (10%)

Query: 159 LSRTDVVGMFVGGMRP--SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
           LSR +V     G  +   +++ LD+A R+ F       ++++ + +  +     +     
Sbjct: 34  LSRAEVEFALAGSPKQIRNSVQLDEASRYEF----FVTLLVSKKILAELQALDVSENPAA 89

Query: 217 FEKYKDNYRAPEY-KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +  ++  ++  E  + +   LF         E+    L+       +    PEIR    +
Sbjct: 90  Y--HQFLFKQLETARELDKQLFQNELVLPDFEV--LALERYKISKNDIAPVPEIREASHI 145

Query: 276 V---FPNQKEADEAFQ-------SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI----- 320
           +     N  EA EA +        L++G+ F  LA E  +     + G    + I     
Sbjct: 146 LRLCTDNCDEASEAIETLQSLKNRLEQGESFANLAIEFSQDPGSKTRGGRLSQGIERDAE 205

Query: 321 -PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
             D  + D++F++ + G F+ ++   FG+ I  + +I  S T SF+EV+  +  ++    
Sbjct: 206 NVDQVVRDALFAIPEVGGFSDIVRSRFGFHILKLESITASRTRSFEEVRPALVAEIEKRF 265

Query: 380 ASEKVKEDYKRL 391
             +  +E    L
Sbjct: 266 RQDAYRERLLSL 277



 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 4/129 (3%)

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
           + +  E  + L+  L  G S   ++      S D       G+  +G E  A    + + 
Sbjct: 156 ASEAIETLQSLKNRLEQGESFANLAIEF---SQDPGSKTRGGRLSQGIERDAENVDQVVR 212

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
             +F   +       V    G +  ++++    +R R  EEV   +  + +     +   
Sbjct: 213 DALFAIPEVGGFSDIVRSRFG-FHILKLESITASRTRSFEEVRPALVAEIEKRFRQDAYR 271

Query: 501 SKANQLVLE 509
            +   L  E
Sbjct: 272 ERLLSLAPE 280


>gi|87311619|ref|ZP_01093736.1| probable peptidyl-prolyl cis-trans isomerase [Blastopirellula
           marina DSM 3645]
 gi|87285622|gb|EAQ77539.1| probable peptidyl-prolyl cis-trans isomerase [Blastopirellula
           marina DSM 3645]
          Length = 558

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 99/265 (37%), Gaps = 36/265 (13%)

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMR--------PSNLLLD-------QAKRFYFENRSVD 193
           +E ++   +M  R  + G+    M         P + L +       Q   +  ++    
Sbjct: 270 EEVLEEQRQMALRELLPGLIDTKMIYLDFIRTIPPDKLSEMQGHLDSQYAEYQMQSDLDQ 329

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
           Y V     +  +     + L    EK K  +   E    S  L      +   E+S+ ++
Sbjct: 330 YEVHTPAELDIVLRREGSSL----EKKKRLFL--EQIVASQQLKT--HVKPNTEVSHQQM 381

Query: 254 QAEYEKNKEKYFSPEIRTVEQLV-----FPNQKEADEAFQSLKK----GKKFIQLAEEQG 304
              Y  +   Y SP     EQL+     F ++ EA++A   +      G     +A+++ 
Sbjct: 382 LDYYHDHAADYASPARAKWEQLMVRFDKFSSKAEAEQAIAEMGNQVLRGAPLDAVAKKES 441

Query: 305 K---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +   +         ++  + + ++  +IFSL      + +I    GY I  V     +  
Sbjct: 442 QCFRASEGGLYDWTTRNSLKNETIDAAIFSLPTN-RLSQIIESPEGYHIVRVLERDEASI 500

Query: 362 VSFQEVKKDIANQMRITKASEKVKE 386
             F++ + +I  ++R  +A++  ++
Sbjct: 501 KPFRDAQLEIKEKIRRERANQAQRD 525


>gi|325851854|ref|ZP_08171019.1| PPIC-type PPIASE domain protein [Prevotella denticola CRIS 18C-A]
 gi|325484696|gb|EGC87609.1| PPIC-type PPIASE domain protein [Prevotella denticola CRIS 18C-A]
          Length = 474

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 66/431 (15%), Positives = 140/431 (32%), Gaps = 52/431 (12%)

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--DELQAEYEKNKEKYFSPE-I 269
           +    + + D    P +++      +   +   I  ++  DE +  Y   K++  +   +
Sbjct: 70  VQAALDAHLD--TLPAFRKEFLGYRNQQIRPAFITDADVEDEARKIYRDTKQQIDANGGL 127

Query: 270 RTVEQLVF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS--- 314
                ++               ++ AD  + +L++G  F  LA+      S    G    
Sbjct: 128 WHCAHILIGMGQHTSKEEEAAARQLADSIYTALQRGADFANLAKRYSTDTSSAKNGGDLP 187

Query: 315 -FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
              K          ++ +L K G+ +  +   FGY I  +   +      +  ++ DI  
Sbjct: 188 RLQKGQTV-AEFEKAMLTL-KPGETSRPMLSPFGYHIIRMIGHE--SLPPYDSLRADIMQ 243

Query: 374 QMRITKASEKVKEDYKRLEEFL-ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
            + +    +++    +RL+  + A G  +     +E+I+   L  ++    D+K      
Sbjct: 244 YIEMRGLRDQIIN--QRLDSLVQAGGKDI----TQEQILDRKLAELEEKDADLKH---LI 294

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
             Y + LL           K         +Y     K+   A  R               
Sbjct: 295 REYHDGLLMVEMSNRTVWDKVAKDETALEAYFRKHRKQYKWAEPR--------------F 340

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
              A  V  KA+   ++   +G  F    + L  +      I R+  E   F     + +
Sbjct: 341 KGIAYHVKKKADVDAVKECVKGLPFSKWAERLRNTFNKDGNI-RIRVEKGIFRKGDNALI 399

Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
                          G  Y +  V   K+   +E D     +     ++L  S +A L+ 
Sbjct: 400 DREVFGQKATVAPVEG--YPIDAVFGKKIKAPEELDDVRDLVISNCQEELEKSWVAALRR 457

Query: 613 QYSVTVHDNLI 623
           +Y V +   ++
Sbjct: 458 KYKVVIDKAVL 468


>gi|323491007|ref|ZP_08096201.1| hypothetical protein GPDM_16601 [Planococcus donghaensis MPA1U2]
 gi|323395363|gb|EGA88215.1| hypothetical protein GPDM_16601 [Planococcus donghaensis MPA1U2]
          Length = 313

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/387 (12%), Positives = 115/387 (29%), Gaps = 119/387 (30%)

Query: 6   RKASRTWVAKIFLVVL---FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
           R      V  +  V+L    + F+ W + +       +  V SV  + +    ++ S ++
Sbjct: 21  RHLKTKPVLMVIGVLLLFNILWFIAWLIPN---DTGKAEKVASVSGEAITREEWLASMEE 77

Query: 63  ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
           + G                      + L  LV+   +    +D G+E     +  E+A  
Sbjct: 78  QHGR---------------------EALLELVNEKVMATAAQDYGIEVSDKEIDLELA-- 114

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
                                                    +V     G   +   +D A
Sbjct: 115 -----------------------------------------LVRSSRDGTEAALYTVDDA 133

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
           +    +   +   ++  + +          +  +++  +  Y                  
Sbjct: 134 R----QREKIKAQLILEKVLTKDVVIEKEEIKAFYDDNESLY------------------ 171

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
                    +++  Y                 +V  +  EA+E  + L+KG  F   A E
Sbjct: 172 ---------DVKDSY-------------RTRIIVLNSSAEAEETIKELEKGSSFEATARE 209

Query: 303 QGKSLSDISLGSF-----SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +    +  +LG       + E   D ++A ++  +   G  +P+   +    I  V+   
Sbjct: 210 RSIDSATGNLGGDIGYISNGEPGVDANVAKAVSKVEVGGWSSPLPLETGKTAIISVTEKV 269

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384
              T S+++V+  I  ++ + +  + V
Sbjct: 270 NGQTFSYEDVEGHINRELALEQLPQAV 296



 Score = 38.0 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 11/157 (7%)

Query: 349 VIAHVSNIKP--SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           V+     IK       S  +VK     ++ +  +S + +E  K LE     G+S +  +R
Sbjct: 153 VVIEKEEIKAFYDDNESLYDVKDSYRTRIIVLNSSAEAEETIKELE----KGSSFEATAR 208

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
              I S    L    G    G+     P  +  + +   K +       + L  G    +
Sbjct: 209 ERSIDSATGNLGGDIGYISNGE-----PGVDANVAKAVSKVEVGGWSSPLPLETGKTAII 263

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
            + E +  +    E+V   + ++    +  + V+ +A
Sbjct: 264 SVTEKVNGQTFSYEDVEGHINRELALEQLPQAVTPEA 300


>gi|157159524|ref|YP_001456842.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli HS]
 gi|157065204|gb|ABV04459.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli HS]
          Length = 428

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   + D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATPDVFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDVFDPAFRDALTRL 360


>gi|315607432|ref|ZP_07882428.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574]
 gi|315250864|gb|EFU30857.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574]
          Length = 474

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 63/413 (15%), Positives = 139/413 (33%), Gaps = 67/413 (16%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIR--------TVEQLVFPNQKEA-------- 283
            ++ +   +++ +++A   K ++ Y   + R            ++    + A        
Sbjct: 93  DQQVRPTLVTDADVEA---KARDIYRETQQRVDGGGGLLKTSHILLLLDQNATKTQQNAA 149

Query: 284 ----DEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
               D  + +LKKG  F  LA     ++  +++   L    +  +   +  D  ++L KK
Sbjct: 150 KVRIDSVYNALKKGADFADLARRLSDDKSSAVNGGQLPWIERNQLVK-AYEDVAYAL-KK 207

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G+ +      +GY +  + + +P F   +  VK  I   +      + +     RL+E  
Sbjct: 208 GEISKPFLSEYGYHVVKLDDKQPFF--PYDSVKTSIYQFIESRGLRDAI--VTDRLQEEA 263

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
            +G +  E     K   +               +     Y + LL           K   
Sbjct: 264 KVGNTTPEQLLDAKTEELTAKD--------DALKYLIKEYHDGLLLYEISNRTVWDKAAK 315

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
                 +Y     K+      R                  A  V + ++   ++ S +GK
Sbjct: 316 DEAGLSAYFAKNKKKYRWEEPR--------------FKGIAYHVKTASDVDAVKRSIKGK 361

Query: 516 NFRDIGKNLGASLLTTNQIN-RMDNENKFFGYDGI--SQVFSGPVEM--VKCFPIENGLS 570
            F +    L  +    + +  R++      G + +   +VF  PV +  V+ +PI+    
Sbjct: 362 PFAEWADILRTTFNNDSVLRIRVEKGIFKKGDNAVVDKEVFKVPVTVKPVEGYPIDATFG 421

Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
            V+      K  P   +D     +       L    +  L+ +Y+V ++  ++
Sbjct: 422 KVL------KNKPEDYQDVRALVVAD-YQDALEKQWVESLRKKYTVVINKEVL 467


>gi|261880635|ref|ZP_06007062.1| peptidyl-prolyl cis-trans isomerase [Prevotella bergensis DSM
           17361]
 gi|270332677|gb|EFA43463.1| peptidyl-prolyl cis-trans isomerase [Prevotella bergensis DSM
           17361]
          Length = 713

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 88/730 (12%), Positives = 196/730 (26%), Gaps = 143/730 (19%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56
           L  IR  SR     + + +    F+     +A  S   S       +  V   K+ +  F
Sbjct: 4   LGKIR--SRGITLIVIIGIGLFAFI---AEEAFRSCESSRNNQRQQIGEVLGDKISYEEF 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                +    +       +N  +     L  ++    V    ++   + +GL      + 
Sbjct: 59  AKLVDESQEAMKLMGQDNLNDAQLNQ--LRDQVWQGYVQYKIIENECDKLGLTVTDAEMQ 116

Query: 117 --------GEIARSPLFHGKDNKFSHDVFVSRLA----REGINEKEYIDH---------- 154
                     +  +P  + +  +F  +     LA    ++  N +               
Sbjct: 117 NVLNEGTNQMLLSTPFVNQQTGRFDANQLKQFLAQYKAQQNTNPQVAEQMQAIYKYWTFI 176

Query: 155 ---YTKMLSRTDVVGMFVGGMRPSNLLLD------------QAKRF-------------- 185
                + L      G+       + +               Q   +              
Sbjct: 177 EKSLRQQLLIQKYNGLLAHCFLSNPIEAKKSFEDENQESQIQLAAYPYSSIEDSKVEIKD 236

Query: 186 ----------------YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
                           Y E+R + Y+ +      A           + ++  +     E 
Sbjct: 237 SELKDKYSELKKRFQQYVESRDIKYVSVQINASAADRAALQKQFVGYAKELAEAADPSEV 296

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYE-----------KNKEKYFSPEIRTVEQLVFP 278
            R +             E    ++  + +           +NK+      ++ + +   P
Sbjct: 297 VRKATSSIPYLGIPVGKEAFPADIAQKIDSMSVGQTSSPVENKQDNTLNIVKLIAKQQLP 356

Query: 279 NQ-----------------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
           +                  K AD  + +L  G  F  +A++ G+   +  + +   E+ P
Sbjct: 357 DSVKFRAIQVGGTTPDEAHKRADSIYNALNAGADFAAIAKKYGQDGQEQWMTTRQYEFAP 416

Query: 322 --DVSLADSIFSLAKKGD-----FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
             D      ++ L   G       +       G +I  V + K         V   I   
Sbjct: 417 SMDKDTKQYLYDLMTMGVNQMKSISLPQ----GNIIVQVLDRKNMINKYTAAV---IKKT 469

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
           +  +K +      + +   F +   + ++I +       ++              +A I 
Sbjct: 470 IDYSKETR--GTIFNKFSSFASANQTPEDIIKNAPKNGYNVQEAKDV--TTAQHYLAGIR 525

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI-KESIPARDRKLE--EVLTDVKKDWK 491
                L  +F   +           +G+ + + I  +  P   R L+  +V   VK++  
Sbjct: 526 STRDALKWLFDAKEGEVSQMYECGDNGNNLLIVICDKIHPVGYRGLDDAQVKELVKQEVM 585

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENKFFGYD 547
             K A+ + +KA            N     K  GA +   NQ+                 
Sbjct: 586 RDKKADMLIAKAKT---------ANSIAAAKAKGAQVTEVNQVTFAAPVFIQTTGASEPA 636

Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMNKDLLDSV 606
               V +         P++       F V        + +  +    L Q   ++  +  
Sbjct: 637 LSGAVAATKQGAFSARPVKGQAGVYQFLVMKRTKNAAKFDAKQQEQKLRQRAMQNAGN-F 695

Query: 607 IAYLKSQYSV 616
           +  L  +  V
Sbjct: 696 MNELFIKAKV 705


>gi|315293370|gb|EFU52722.1| PPIC-type PPIASE domain protein [Escherichia coli MS 153-1]
          Length = 428

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKREQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKREQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|224824918|ref|ZP_03698024.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
 gi|224602589|gb|EEG08766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
          Length = 244

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 19/170 (11%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----------NQKEADEAFQSLKKGKK-F 296
                 A Y  + E++   E  T   ++FP            + +A+     ++     F
Sbjct: 74  DEATCLAFYNDHPEQFRQGESATASHILFPLGQGDDVANMLAKAKAEGVLAEVQANPSRF 133

Query: 297 IQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAH 352
             LA E     S     +LG F +  +       ++FS  + G  TP ++   FGY +  
Sbjct: 134 ADLAREHSTCPSGQQGGNLGQFGRGQMV-PEFEQAVFS-TEAGQITPNLVETQFGYHVIQ 191

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSM 401
           V++ +    ++F+++K+ +   +      + + E   +L EE    G SM
Sbjct: 192 VNDRQSGGQLAFEDIKERLGQYLNEMAGRQMMHEYLSKLVEEAKIEGYSM 241



 Score = 38.8 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 4/123 (3%)

Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
             +KA  ++ E       F D+ +            N           +    VFS    
Sbjct: 115 AKAKAEGVLAEVQANPSRFADLAREHSTCPSGQQGGNLGQFGRGQMVPEFEQAVFSTEAG 174

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
            +    +E    Y V +V + + G        K++   YL +M  + ++   ++ L  + 
Sbjct: 175 QITPNLVETQFGYHVIQVNDRQSGGQLAFEDIKERLGQYLNEMAGRQMMHEYLSKLVEEA 234

Query: 615 SVT 617
            + 
Sbjct: 235 KIE 237


>gi|168700601|ref|ZP_02732878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gemmata
           obscuriglobus UQM 2246]
          Length = 367

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 101/337 (29%), Gaps = 68/337 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +     V  + +P  +   + +Q                        K+I+ +L+  A +
Sbjct: 67  TGNAAVVNGKPIPEVAVYRALRQFPEQHRDMA--------------RKEIMAHLIENALI 112

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           D+++  +    D   V   IA       +  +   D +   L    + E E+    T  +
Sbjct: 113 DEYLTALKTTVDEKDVEKLIAD---LKKELTEAKKD-YAKELEAMMLTEAEFRSEVTAQM 168

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                V                                           ++A L Q FE 
Sbjct: 169 KWEKFVQQ---------------------------------------QGTDAALKQLFES 189

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
             D +      R  +IL      E K + ++ +L+      K+       + V  L    
Sbjct: 190 SPDVFDG-TMVRARHILMTPGTDEAKRKDADQKLRGI----KQAVEQEAAKAVAALPATA 244

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336
              A E  +  K  + F   A+      S      L  F +        A + F+L K  
Sbjct: 245 DAVAKEQARVSKTDEMFAAYAKGYSTCPSKKDGGDLNFFPRAGAMVEPFAKAAFAL-KPY 303

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQE--VKKDI 371
             + V+   FGY +  V+  +      F++  VK+D+
Sbjct: 304 QMSDVVATEFGYHLILVTQRRQGTPKKFEDKGVKEDV 340


>gi|71907025|ref|YP_284612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
 gi|71846646|gb|AAZ46142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
          Length = 271

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 84/248 (33%), Gaps = 33/248 (13%)

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN------AVLTQWFEKYKD------ 222
           S    D+      +  S++  +L +     +  P+         +   +   ++      
Sbjct: 23  SEPERDRLDDIARKQDSIEQRILASAASANVVVPAATVKNRLDEIRARYPANEEFILDMA 82

Query: 223 -------NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
                         + +               +S  + +  Y  + E +  PE R +  +
Sbjct: 83  RSDLDEAALEQAVERDLRIEAVLEKVASSSPPVSAVDAEIYYRLHPEAFDRPEARRLRHI 142

Query: 276 VFP---NQKEADEAFQ------SLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDV 323
           +      Q++A           +LK   KF + A    +   ++    LG+  ++ +   
Sbjct: 143 LITFNTPQEKAKAIATLESLRSTLKNPAKFAEAALRHSQCPTAMEGGQLGTVKRKQLY-A 201

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
            L  + F+L  +G+ + V+    G  I     I PS  ++F EV + I  ++   +  E 
Sbjct: 202 ELEPAAFAL-NEGEISAVLASPIGLHILRCDEILPSGMLAFGEVCERIIARLGDKRRREA 260

Query: 384 VKEDYKRL 391
            +E  K L
Sbjct: 261 QREWIKSL 268


>gi|288802505|ref|ZP_06407944.1| peptidyl-prolyl cis-trans isomerase [Prevotella melaninogenica D18]
 gi|288335033|gb|EFC73469.1| peptidyl-prolyl cis-trans isomerase [Prevotella melaninogenica D18]
          Length = 715

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 79/677 (11%), Positives = 197/677 (29%), Gaps = 115/677 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFINS 59
           L  IR  S+  +    + +    FL    + +   + G     +  +  +K+    +   
Sbjct: 4   LGKIR--SKGGILVAAIGLALFAFLAGDAARSCDGIKGEARQQIGEILGKKISVQDYQKL 61

Query: 60  WKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG- 117
             +    I        +  +      +  ++   LVS   ++   E +GL      +   
Sbjct: 62  IDEYQSAIKFTMQRDNLTDQELNQ--VKDQVWQQLVSNRVIEVDAEKVGLTVTENEIQNV 119

Query: 118 -------EIARSPLFHGKDNKFSHDVFVSRL-----AREGINEK------------EYID 153
                   + ++P  + +  +F  +           A+   + +                
Sbjct: 120 LNEGTNPMLVQTPFVNQQTGRFDVNALKQFFDSYNKAKAAKSPQVEQMQAIYDYWLFVEK 179

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAV 212
           +    L       +    +  +      A +   E   +    L    V       ++  
Sbjct: 180 NLRAQLLGQKYQALLASCVLSNKAEAKMAFKDNNEESQIQLASLAYSTVKDSDVKMTDDD 239

Query: 213 LTQWFEKYKDNYRA-PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
           L   + + K  +R   E + I ++ F +                                
Sbjct: 240 LKAKYAELKPAFRQNVETRDIKFVDFQIKASAADRS------------------------ 275

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
                    KE ++  + L   +    +  + G  +  + L   +K Y     +A  I S
Sbjct: 276 ------QVVKEMNDFQKQLASAEDPAAVVSKSGSEIPYLGLPVSNKAYQQYPDIASKIDS 329

Query: 332 LAKKGDFTPVIHGSFGYV-IAHVSNIKPSFTVSFQEVKKDIANQMRITKAS------EKV 384
           L+  G    V +     + I  V +            K  +A+ ++  + +      ++ 
Sbjct: 330 LS-VGTTGVVENAQDNTLNIIRVLS------------KAQLADSIQFRQINIAAATPDEA 376

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           +     +++ LA G   D +++R       +       +           +   LL    
Sbjct: 377 RAKADSIQKALAGGADFDALAKRYGQTGEKVWFTGQQYEMAPSMNQDNRTFINALL---- 432

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
             +  ++    +AL  G+ + +Q+ +      +    V+  V         ++   S A 
Sbjct: 433 --NGEVNATQNLALTQGNII-LQVLDKKAFTTKTTAAVIKKVIDF------SKATRSNAY 483

Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-----YDGISQVFSGPVEM 559
               E+  +     D+ KN   S      +N +     + G      D +  +F      
Sbjct: 484 NKFSEFVAKSSTVADLEKNAPKSGYQVQSLNDISTAEHYVGGIPGTRDALKWLFEAKQGE 543

Query: 560 V-KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS-----VIAYLKSQ 613
           V   +   N    +V  +T     P   +    + + +++ ++++       ++A LK  
Sbjct: 544 VSPLYECGNNDHLLVIALTAVH--PQGYRSWDDAQVKEILKREVIKDKKAEKLMAKLKG- 600

Query: 614 YSVTVHDNLIQRYLDGE 630
               V+     +    +
Sbjct: 601 ----VNSIAAAQAKGAK 613



 Score = 80.8 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 116/348 (33%), Gaps = 24/348 (6%)

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF-SLAKKG 336
             + +AD   ++L  G  F  LA+  G++   +       E  P ++  +  F +    G
Sbjct: 375 EARAKADSIQKALAGGADFDALAKRYGQTGEKVWFTGQQYEMAPSMNQDNRTFINALLNG 434

Query: 337 DFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +     + +   G +I  V + K   T +   V   I   +  +KA+      Y +  EF
Sbjct: 435 EVNATQNLALTQGNIILQVLDKKAFTTKTTAAV---IKKVIDFSKATR--SNAYNKFSEF 489

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           +A  +++ ++ +        +  ++          V  IP     L  +F          
Sbjct: 490 VAKSSTVADLEKNAPKSGYQVQSLNDISTAEHY--VGGIPGTRDALKWLFEAKQGEVSPL 547

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
                +   + + +    P   R  ++    VK+  K     +    KA +L+ +   +G
Sbjct: 548 YECGNNDHLLVIALTAVHPQGYRSWDD--AQVKEILKREVIKD---KKAEKLMAKL--KG 600

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC-----FPIENGL 569
            N     +  GA + + NQI              +    SG V           P++   
Sbjct: 601 VNSIAAAQAKGAKVSSVNQIT-FAAPAFVQATGSVEPALSGAVAGTAAGKFSKAPVKGNA 659

Query: 570 SYVVFKVT-NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
              VF+V   S     +  +  +       N  L+ + +  L  +  V
Sbjct: 660 GVYVFQVVKKSMRAGSKYDETLVMQQAAQANMQLVGNFMQDLILKAKV 707


>gi|225677192|ref|ZP_03788188.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225590779|gb|EEH12010.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 120

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 5/120 (4%)

Query: 8   ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
             + +  K+ +V+L    +  G+ + L        V  VG++ +    + + ++     I
Sbjct: 2   NVKNFFTKVTVVLLACLLIFMGIGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYEKQI 61

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
           S   G   + E+ + +  D  +L+ L+    L     ++GL          I  +  F  
Sbjct: 62  S---GSDASREQVKKLKYD--LLNALIEQKLLFNLTSELGLTVGEESTKNHIKNTKYFQN 116


>gi|194429871|ref|ZP_03062383.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli B171]
 gi|194412090|gb|EDX28400.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli B171]
          Length = 428

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWSRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWSRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|255514246|gb|EET90507.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Micrarchaeum acidiphilum ARMAN-2]
          Length = 91

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
                 ++      A E    L KG+ F +LAEE     S      LG F K  +     
Sbjct: 4   KIRCAHILVEKFSTAQEVLDKLAKGESFAKLAEEYSIDGSRKRGGDLGFFGKGVMV-REF 62

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            D+ F L +KG  + ++   FGY I  
Sbjct: 63  EDAAFKL-EKGQTSGIVKTQFGYHIIK 88


>gi|228470909|ref|ZP_04055754.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
 gi|228307306|gb|EEK16320.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
          Length = 718

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 94/644 (14%), Positives = 220/644 (34%), Gaps = 72/644 (11%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS-----GSSTVVSVGRQKVPFSSF 56
           L+ IR  +   +  I + V  + F+   + D L S S          + +  +KV +  F
Sbjct: 4   LQKIRNRAGLLI--IVVGVALLAFI---IGDGLRSGSSLLQDNKMVALKIDGKKVKYDEF 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                +      ++ G + + +R   + +  ++   L+S   L+Q  + +GL      V 
Sbjct: 59  QQLLTERTEPYERQ-GKLTDQDR---MQISNQLTQELISDYVLEQEAKAVGLRVTPAEVS 114

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I    L     ++ +   F       G       +    ++S  D+  +        +
Sbjct: 115 ALIFGEGL---PTSQMAAQFFSQFGVNMG-----DPEQIRSVMSELDLNKIKALPAEQQS 166

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRAPEYKRISY 234
           +++    ++    + +    L+ +         NA+LT+ +      + Y      R   
Sbjct: 167 MMISVRNQWLETEKQIRSQRLSEKL--------NALLTRSYAINSLDEKYTTGLGSRTVA 218

Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRT----VEQLVFPNQKEADEAFQ 288
           ++          ++++++ +++A Y+ +K+ Y  P  +        LV P++ +   A  
Sbjct: 219 VVRTPSTILPNDQVKVTDQQVRAYYDSHKQLYAFPFEQAKVNYYSTLVRPSEADYAAAKA 278

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD------SIFSLAKKGDFTPVI 342
           ++   +  +       K + +   G   + Y  D  L        +  ++ ++G    V 
Sbjct: 279 NVDSARMQLLATTTPDKVVRNYENGHAYETYFTDKELEQFLSTQPNAMTMLREGAIGSVN 338

Query: 343 H---GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
                +  Y +  + + K +     +EVK +I   +  T A          L   +  G 
Sbjct: 339 EPVIVNDSYTLIKLIDRKQAP----EEVKVNIIP-LDSTNAP-----KADSLIAAIQSGA 388

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD-DPLSKDHTVAL 458
           +   +++     S+D  +    G  +   +   +P        +FG   D L+K      
Sbjct: 389 T--TLAQVVATYSMDDQIKANGGYLINSDQYTGMPDSTFTESELFGMQLDTLNKTPINQF 446

Query: 459 P----DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
                 G+ + ++     P+    L ++         + +T  +  +K N++     K+ 
Sbjct: 447 VKIERPGATLLIRKTA--PSASVNLYKIAQLTVPINFSEETYRKEQAKINEI-FSGDKKF 503

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMV--KCFPIENGLS 570
               D  +  G S++    +N             + +S         V  K F   N   
Sbjct: 504 AQMMDAAQKAGLSVVRGEYVNSSSASLASIPNSREIVSWALRSKAGAVSDKIFRCGNNDY 563

Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQ-MMNKDLLDSVIAYLKSQ 613
            VV +V        Q  ++    +   ++ +   D + A L S+
Sbjct: 564 LVVAEVETKYPAGFQPFEQVADQIRDYVLMEQRGDQLAANLASK 607


>gi|167617958|ref|ZP_02386589.1| survival protein SurA, putative [Burkholderia thailandensis Bt4]
          Length = 448

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 39  DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D+  V   + R      + N    D + +R+  +G+    ++      L
Sbjct: 94  VQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDLFVRDARTEL 149

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211
             + +    V   +  S+  +               ++  +++I +        AD   A
Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGAQQDLRLEHIFVKAPTNAPQADIDAA 209

Query: 212 VLTQWF-----------------------EKYKDN---YRAPEYKRISYILFDVHEKEKK 245
                                        +  K     ++AP       +      +  +
Sbjct: 210 QKKAEGLLQQALASGTNFERLATSQSEADDAKKGGDLGFKAPSSLPSDVVDAVSKLRPGE 269

Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286
           +  +   +   +E          +N           V  ++       ++ +A +     
Sbjct: 270 VNPTLIRVPDGFEIVRLVDRRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 330 RRQIEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNAL-QDGQVSNPVR 387

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436


>gi|255656245|ref|ZP_05401654.1| putative protein export chaperone [Clostridium difficile QCD-23m63]
          Length = 140

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 9/117 (7%)

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +KEA+E  +  + G+ F  LA++  +  S      LG F K  + + S   + F+L KKG
Sbjct: 16  KKEAEEILKKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVE-SFEKAAFAL-KKG 73

Query: 337 DFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + +  ++   +GY I   ++ K      F+E+K D+ + +   K S  ++   ++  
Sbjct: 74  EVSNKLVESDYGYHIIKKTDEK---YQPFEEIKSDLVSSLTSEKQSLLIQNLKEKYN 127


>gi|166710727|ref|ZP_02241934.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 463

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/432 (11%), Positives = 116/432 (26%), Gaps = 72/432 (16%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +   +L +   I  L+ A  S         V    V  S    + +      + +   + 
Sbjct: 8   VLASLLAITSTISPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLP 67

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
             +      L +++L+ L+         +  G+      +   IA       + N  + D
Sbjct: 68  PDDV-----LQRQVLERLILVKLQVGRADGSGIRVSDEELNRAIASI----AQQNGTTVD 118

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDY 194
               +LA +G+   ++       +    +   F    +  S   +D A     +  +   
Sbjct: 119 GLRQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTA--LTQQAATGSK 176

Query: 195 IVLNNRHVPAIADPSNAVL----------TQWFEKYKDNYRAPEYK-----------RIS 233
             L +  +      +   +              +K + ++ A   +            + 
Sbjct: 177 YHLAHILIGLPEGATAEQIATGQKKVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLG 236

Query: 234 YILFDVHEKEKKIEISN---------------------DELQAEYEKNKEKYFSPEIRTV 272
           +   D         I +                      E++      ++K  +      
Sbjct: 237 WRSLDEIPNAFAQLIRDMKPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKMVT--EYNA 294

Query: 273 EQLVF---------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEY 319
             ++            + + D     +  G  F   A+E  +  +       LG F  + 
Sbjct: 295 RHILVRVGDNQTEAQAKAKIDTIRARIVGGADFQATAKESSEDTNSRGQGGDLGWFPADA 354

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
                    + SLA  G  +       G+ I      + +   S +  +  +   +   K
Sbjct: 355 F-GPDFGKQVESLA-DGAVSEPFRTQAGWHIVQRVGSRQTDV-SAENQRAQVRETIGRRK 411

Query: 380 ASEKVKEDYKRL 391
             E+     + L
Sbjct: 412 LEEEYNRYLQEL 423


>gi|331006695|ref|ZP_08329972.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [gamma proteobacterium IMCC1989]
 gi|330419503|gb|EGG93892.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [gamma proteobacterium IMCC1989]
          Length = 432

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/406 (11%), Positives = 112/406 (27%), Gaps = 70/406 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  V    +          Q    +  +      +++     L  ++LD L+     
Sbjct: 37  DGIIAIVKDDIIFAQELEQKIHQAKIRLQAR------NQKTDEKRLQSQLLDALILEKLQ 90

Query: 100 DQFIEDIGLEADHGRVWGEIARSPL-FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
               +   L A    +   IA++          F        LA + +++ +      K 
Sbjct: 91  LSLAKQNNLVATDAEIDNSIAQTKAQLQSNGASFDD-----YLAAQNLSQTQARKEIEKE 145

Query: 159 LSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
           +  + V    +   +  ++  +D    +       +++             +     Q  
Sbjct: 146 VLISKVQQAVISQRINITDTEVD---NYLESKEGQEWLTPRLHLGQIFLPYTAKNKQQTM 202

Query: 218 EKYKDNYRAPEYKRISYILF--------DVHEKEKKIEISNDELQAEYEKNKEKYFSPE- 268
           +K +  YR    +   + +F        +  +         ++L   + +  +K    E 
Sbjct: 203 QKAQKIYRDVSKRTNEFGVFAQRFSQGPNAEKGGDIGIQRKEDLPPLFVERVDKLAVGEI 262

Query: 269 ---------------------------IRTVEQLVFP---------NQKEADEAFQSLKK 292
                                         V  ++            QK+ +E  + + +
Sbjct: 263 TQPFFSDAGVHILALFDRQGAEPVIVTQYKVRHILVKPTDLFTEEEAQKKINELREKIIQ 322

Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F  +A+E        L    +G  S       +   ++         +     +FG+
Sbjct: 323 GASFATIAQEYSDDIGSKLDGGDVGWSSPGVFV-PAFEKAM-QTTAINTISQPFKSTFGW 380

Query: 349 VIAHVSNIKPSFTVSFQEVK-KDIANQMRITKASEKVKEDYKRLEE 393
            I  V   +      F  VK   + N +   +  +++    K L E
Sbjct: 381 HILTVEGQRSKDI--FDTVKRSQVRNIIGQQRFQDELTIWLKELRE 424



 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 85/282 (30%), Gaps = 30/282 (10%)

Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
             +  +EK         L    +         +  ++  +D +          +    + 
Sbjct: 67  RNQKTDEKRLQSQLLDALILEKLQLSLAKQNNLVATDAEIDNSIAQTKAQLQSNGASFD- 125

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
               A  + S     +  EK            +           ++I I++ E+    E 
Sbjct: 126 -DYLAAQNLSQTQARKEIEK-----------EVLISKVQQAVISQRINITDTEVDNYLES 173

Query: 260 NKEKYFSPEIRTVEQLVFP--------NQKEADEAFQSLKKGKK----FIQLAEEQGKSL 307
            + + +      + Q+  P          ++A + ++ + K       F Q   +   + 
Sbjct: 174 KEGQEWLTPRLHLGQIFLPYTAKNKQQTMQKAQKIYRDVSKRTNEFGVFAQRFSQGPNAE 233

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
               +G   KE +P     + +  LA  G+ T       G  I  + + + +  V   + 
Sbjct: 234 KGGDIGIQRKEDLP-PLFVERVDKLA-VGEITQPFFSDAGVHILALFDRQGAEPVIVTQY 291

Query: 368 KKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
           K   I  +       E+ ++    L E +  G S   I++  
Sbjct: 292 KVRHILVKPTDLFTEEEAQKKINELREKIIQGASFATIAQEY 333


>gi|221135224|ref|ZP_03561527.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola sp.
           HTCC2999]
          Length = 431

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/362 (11%), Positives = 104/362 (28%), Gaps = 65/362 (17%)

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
           N        L  + ++ L+      Q  E +G++    ++   IA              D
Sbjct: 57  NQSLPSDRALRTQAIERLILDNLQMQMAERMGIQVSDPQLEQTIANIAKNQNST----MD 112

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN-RSVD 193
              + +A+ G++   Y +   K L   +V        +  +   +        E      
Sbjct: 113 QLRAGIAQAGLDYDSYRETVRKELITGEVRRANVRRRIYITPQEISSLVALIEEQGNEQA 172

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA----PEYKRISYILFD----------- 238
              L +  +    +P++A +T   E+ +          ++ +I+                
Sbjct: 173 EYRLGHILIGFPPEPTDADITSARERAEKVLNLLNSGSDFAKIAIASSSGPKALDGGDMG 232

Query: 239 -------VHEKEKKIEISNDE-------------LQAEYEKNKEKYFSPEIRTVEQLVFP 278
                       + ++    +             +    E    +    E      ++  
Sbjct: 233 WLNINSMPTLFAEVVQGKEADELIGPIRSGAGFHILKIQETRGIEVAKLEEINARHILVK 292

Query: 279 -----NQKEADEAFQS-----LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSL 325
                ++++ +   Q      L+    F  LA+   +       G    F+   +   + 
Sbjct: 293 PSIILSEQKVETMLQEFKAQVLEGTADFADLAKAHSEDPGSAVKGGELGFADPSLYVPAF 352

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            D++  L K  + +  I    G+ +  + + +            DI ++ +  KA + + 
Sbjct: 353 KDALVKLEKD-EISEPIRSVHGWHLIQLIDRR----------VDDITDRKKQDKAYQLIF 401

Query: 386 ED 387
             
Sbjct: 402 NR 403



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/322 (12%), Positives = 99/322 (30%), Gaps = 44/322 (13%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277
           D+YR    K +           ++I I+  E+ +     +E+        +  ++     
Sbjct: 126 DSYRETVRKELITGEVRRANVRRRIYITPQEISSLVALIEEQGNEQAEYRLGHILIGFPP 185

Query: 278 --------PNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLA 326
                     ++ A++    L  G  F ++A       K+L    +G  +   +P  +L 
Sbjct: 186 EPTDADITSARERAEKVLNLLNSGSDFAKIAIASSSGPKALDGGDMGWLNINSMP--TLF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-------VKKDIANQMRITK 379
             +    +  +    I    G+ I  +   +       +E       VK  I   +   K
Sbjct: 244 AEVVQGKEADELIGPIRSGAGFHILKIQETRGIEVAKLEEINARHILVKPSII--LSEQK 301

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
               ++E   ++ E  A    + +    +   ++    + FA           +P  +  
Sbjct: 302 VETMLQEFKAQVLEGTADFADLAKAHSEDPGSAVKGGELGFA------DPSLYVPAFKDA 355

Query: 440 LFRVFGKDDPLSKDHT-----VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
           L ++   +             + L D      ++ +    + +  ++    +       +
Sbjct: 356 LVKLEKDEISEPIRSVHGWHLIQLIDR-----RVDDITDRKKQ--DKAYQLIFNRKFAEE 408

Query: 495 TAEEVSSKANQLVLEYSKEGKN 516
           T   +     +  +E   +G N
Sbjct: 409 TDAWLREMREEAFIEVLDDGSN 430


>gi|221210892|ref|ZP_03583872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD1]
 gi|221169848|gb|EEE02315.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD1]
          Length = 306

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 89/235 (37%), Gaps = 16/235 (6%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
           V G+  +   +D+A R      +          + A      A L Q ++       A E
Sbjct: 65  VNGVPITQAQIDEAVRVSKAPDTPALRTALKNQLIARELFRQAALKQHYDTKPQVVAAVE 124

Query: 229 YKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
             + ++     + ++ K + +++ +++A Y+         E +    +   +   A +  
Sbjct: 125 QAKTLAMTQAYLSDQVKPVPVTDADVKARYDAIVATLGENEYKP-SVIAVNDADTAKQII 183

Query: 288 QSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDV--------SLADSIFSLAKKG 336
             LKKG+ F +LA++  K   +    +L   S +   +          LA+++  L + G
Sbjct: 184 ARLKKGEDFAKLAQQFSKGPAAAQGGALNWISFKTPIEAGHTQNWPQPLAEALVKLPQGG 243

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM---RITKASEKVKEDY 388
                +     Y I    + +P+   +F + K  +  Q+    + KA+ +V  D 
Sbjct: 244 LTREPVQVGDAYWIVRADDKRPTQVPTFDQAKDTLRQQLEQVAMEKATAQVVADL 298


>gi|320162050|ref|YP_004175275.1| hypothetical protein ANT_26490 [Anaerolinea thermophila UNI-1]
 gi|319995904|dbj|BAJ64675.1| hypothetical protein ANT_26490 [Anaerolinea thermophila UNI-1]
          Length = 303

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 79/262 (30%), Gaps = 42/262 (16%)

Query: 135 DVFVSRLAREGIN--EKEYIDHYTKMLSRTDVVGM--FVGGMRPSNLLLDQAKRFYFENR 190
                  A+ G+    +E        L    ++    F  G    +  L++      E R
Sbjct: 75  KQLQEAQAQMGLTSTPEEQRRMVLDDLIAATLLAQAAFKEGFTLDDAALEEQIAALAEQR 134

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
                + N        + S              +R+   + ++           ++    
Sbjct: 135 GGMSALQNWMTRMGYDEVS--------------FRSALRRSLAAAWMR-DTIAAQVP--- 176

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
                            E     Q++    + A +    ++ G  F  LA     +    
Sbjct: 177 --------------ERAEQVHARQILLMTPETAQQVLNQIRAGANFATLAFGYDLTT-GG 221

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366
            LG F + Y+   ++ ++ F+L + G+ + +I    GY I  V   +    +S       
Sbjct: 222 DLGWFPRGYLTQPAVEEAAFAL-QPGEVSEIIQTELGYHILQVLERETDRLLSPDARLTL 280

Query: 367 VKKDIANQMRITKASEKVKEDY 388
            +K +   ++  +   +++E  
Sbjct: 281 QRKALEAWLQQARTQAQIEERL 302



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 11/130 (8%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V+ V  + VP + +  S K +L     ++G     E        + +LD+L++   L Q 
Sbjct: 57  VLVVNGEGVPLAEYEASLK-QLQEAQAQMGLTSTPEEQ-----RRMVLDDLIAATLLAQA 110

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
               G   D   +  +IA       +    S     + + R G +E  +     + L+  
Sbjct: 111 AFKEGFTLDDAALEEQIA---ALAEQRGGMS--ALQNWMTRMGYDEVSFRSALRRSLAAA 165

Query: 163 DVVGMFVGGM 172
            +       +
Sbjct: 166 WMRDTIAAQV 175


>gi|187733861|ref|YP_001878866.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii CDC
           3083-94]
 gi|187430853|gb|ACD10127.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii
           CDC 3083-94]
          Length = 428

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/388 (12%), Positives = 125/388 (32%), Gaps = 69/388 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-I 232
               ++   +    +N +   + L++  +P   +P++  + +   + +      + +   
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE--AESQARAIVDQVRNGA 210

Query: 233 SYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE---------------- 268
            +    +     +  ++          EL   + +        +                
Sbjct: 211 DFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKV 270

Query: 269 -------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGK 305
                              ++         ++A    ++    +K GK  F   A+E  +
Sbjct: 271 NDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQ 330

Query: 306 SLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   
Sbjct: 331 DPDSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDK 388

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390
           +    K      +   K SE+     + 
Sbjct: 389 TDAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A      ++ G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQVRNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPDSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|60680538|ref|YP_210682.1| hypothetical protein BF0994 [Bacteroides fragilis NCTC 9343]
 gi|60491972|emb|CAH06733.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 712

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 77/591 (13%), Positives = 174/591 (29%), Gaps = 84/591 (14%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           L+ IR  S+  +  I + +    F I G +  +     S  V  V  + +    + N  +
Sbjct: 4   LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGETLSAQDYQNMVE 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
           +   +I    G    ++  ++  +  ++  + V+   +++  + +G+      +   I  
Sbjct: 61  EYTEVIKFSSGMSSLNDE-QTNQVKDEVWRSYVNNKLIEKEAKKLGITVSKAEIQSIINE 119

Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRLAR---EGIN--EKEYIDHYTKMLSRTDVVGMF 168
                 +   F       F  D+    LA            +Y+++Y  M     +    
Sbjct: 120 GVNPLLQQTPFRNPQTGAFDKDMLKKFLADYSKMDKTKMPSQYVEYYEGM---HKLWSFV 176

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
              +  S L                  ++         +  +A     F+   +      
Sbjct: 177 EKTLIQSRLAEKYQ------------ALVTKALFSNPVEAQDA-----FDARVN------ 213

Query: 229 YKRISYILFDVHEKEKK-IEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKEADEA 286
              +              I +   EL+  Y K KE++    E R ++ +       A++ 
Sbjct: 214 QSDVLLAAVPYSSIVDSTITVKESELKDLYNKKKEQFKQYVETRNIKYIDVQVIASAEDR 273

Query: 287 FQSLKKGKKFI-QLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIFSL---AKKGDF 338
               ++   +  QLA   G   + I        Y+       +    + +    A  G  
Sbjct: 274 AAIQQEVTDYTNQLATANGDYTTFIRSTGSEYPYVDLYYTKKAFPSDVVARMDSASIGQV 333

Query: 339 TPVIHGSFGYVI--AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
               + +    I    V +   +       V+           A  K       +   + 
Sbjct: 334 YGPYYNAGDNTINSFKVLSKVAAA----DSVQFRQIQVYTEDAAKTKA--LADSIYTAIK 387

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
            G     ++++             +          A    + L F     +  +++   V
Sbjct: 388 GGADFTALAKKYG-------QTGESNWISSANYENAQVDGDNLKFISTINNLGVNELSNV 440

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
           AL  G+ + +Q+ +    +D         V    + V+ ++E  +KA     ++      
Sbjct: 441 ALGQGNII-LQVTDKKAVKD------KYKVAVIKRAVEFSKETYNKAYNEFSQFIAANPT 493

Query: 517 FRDIGKNL---GASLLTTNQINRMDNENKFFGYDGISQ----VFSGPVEMV 560
              +  N    G  LL  N +    +E+   G  G  +     F+     V
Sbjct: 494 VDKVAANAEESGYKLLERNDL--YSSEHGIGGIRGTKEALKWAFAAKPGEV 542



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 112/366 (30%), Gaps = 22/366 (6%)

Query: 262 EKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLG 313
            K  + +     Q+          +  AD  + ++K G  F  LA++ G++   + IS  
Sbjct: 352 SKVAAADSVQFRQIQVYTEDAAKTKALADSIYTAIKGGADFTALAKKYGQTGESNWISSA 411

Query: 314 SFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           ++    +   ++    +I +L    + + V  G  G +I  V++ K         V   I
Sbjct: 412 NYENAQVDGDNLKFISTINNLG-VNELSNVALGQ-GNIILQVTDKKAVKDKYKVAV---I 466

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
              +  +K  E   + Y    +F+A   ++D+++   +     L   +       G  + 
Sbjct: 467 KRAVEFSK--ETYNKAYNEFSQFIAANPTVDKVAANAEESGYKLLERNDLYSSEHG--IG 522

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
            I   ++ L   F                   + V +   I    R L +V   ++ +  
Sbjct: 523 GIRGTKEALKWAFAAKPGEVSGLYECGESDRMLVVGLVSVIEEGYRPLAQVQDQLRAEII 582

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
             K AE++ +           +   +  +   +  S+                    +  
Sbjct: 583 RDKKAEKIMADMKAANATTIAQ---YTSMANAVSDSVKHVTFAAPAYVAALRSSEPLVGA 639

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
             S         PI+      V +V            +      + M+  L    +  L 
Sbjct: 640 YASVSDINKLSAPIKGNGGVFVLQVYAKDKLNETFDAQSEEATLENMHARLASRFMNDLY 699

Query: 612 SQYSVT 617
            +  V 
Sbjct: 700 LKGDVK 705


>gi|325526358|gb|EGD03958.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           TJI49]
          Length = 287

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 15/157 (9%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----------FQSLKKGKKFI 297
           S+ E+Q  Y++N+  + +P    V Q+       AD A             S  +   F 
Sbjct: 113 SDAEIQTVYDQNRAAFTAPRALHVAQIYIAVPPNADAATVDKARKQAADLASRARNGDFA 172

Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            LA+   +  +  + G    F  E +   ++  +  +L K G  +  I    G+ +  + 
Sbjct: 173 ALAKANSQDKASAANGGDMGFVPEPMLVPAVRQAADAL-KPGQVSGPIQTPTGFHVVKLI 231

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +++ +      +VK+ +   +R  +  +  +    +L
Sbjct: 232 DVRAAAPRPLADVKERVRAMLRAQRTQQGAQAYLAKL 268



 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 5/127 (3%)

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           A     +  ++    LA      + +   K  S D       G      E   +P   Q 
Sbjct: 147 ADAATVDKARKQAADLASRARNGDFAALAKANSQDKASAANGGDMGFVPEPMLVPAVRQA 206

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
              +     P      +  P G +  V++ +   A  R L +V   V+   +  +T +  
Sbjct: 207 ADAL----KPGQVSGPIQTPTG-FHVVKLIDVRAAAPRPLADVKERVRAMLRAQRTQQGA 261

Query: 500 SSKANQL 506
            +   +L
Sbjct: 262 QAYLAKL 268


>gi|212213438|ref|YP_002304374.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212]
 gi|212011848|gb|ACJ19229.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212]
          Length = 321

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 106/352 (30%), Gaps = 80/352 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +  S   ++         Q+                KK+LD L+     
Sbjct: 38  DQIVAVVNDEIITQSELNHALTAAKQQFMQR-----QISLPDQKTFKKKVLDQLIYQKLQ 92

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +   ++  +  +   +AR      + N  S      +L +EGI+ KE+     K L
Sbjct: 93  LQVAKHNQIKVTNNEINAAVARI----SQANHLSQTALKQKLTQEGISYKEFRSQLQKQL 148

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             + +                                     +      + + +  + ++
Sbjct: 149 IISKLQHQ---------------------------------ALQDTISINKSDIAAFQKQ 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +     + EY  I+ IL  +     + +I++                             
Sbjct: 176 HAGQIASTEY-HIATILIPLPASATQAQINHA---------------------------- 206

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           + +A    + L+KG  F    +          LG  S + +P V    ++  + K  + T
Sbjct: 207 KGKAALVLKQLQKGSSFETAMKMH---PGSADLGWRSAKELPQV-FVKTVLKM-KPNEVT 261

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             I    G+ I  + + +   TVS     + I   +   K  + +++   +L
Sbjct: 262 GPIQAPNGFHIIKLLDKEAKNTVS----DQQIQRIVYQQKVEKALQKWLTQL 309


>gi|291278662|ref|YP_003495497.1| hypothetical protein DEFDS_0230 [Deferribacter desulfuricans SSM1]
 gi|290753364|dbj|BAI79741.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 329

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 6/166 (3%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
            EK I +S DE++ +Y K  +   S     V  +V  N K+A  A ++L +GK F ++A 
Sbjct: 155 IEKNITVSEDEVKNKYNKIDKTKKSIVKYHVLHIVTANYKDALNARRALLRGKSFKEVAL 214

Query: 302 EQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +     +      LG    + +P   +   I  L  K   +PV    +GY I  V + K 
Sbjct: 215 KYSVGPEKDQGGDLGYIVLDDMP--VIFQKIKRLRIK-RISPVYKSDYGYHIFQVLDKKK 271

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
              V ++ +K  +  ++   K  + + +  + L++   +  ++D +
Sbjct: 272 EVEVGYEVLKPRLYQEIFAEKVEKFINDYVEVLKKNAKITINIDNL 317


>gi|317402408|gb|EFV82980.1| chaperone surA [Achromobacter xylosoxidans C54]
          Length = 517

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 69/512 (13%), Positives = 151/512 (29%), Gaps = 59/512 (11%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V +  +      ++ ++  G +  +       +      L  ++L  L+     
Sbjct: 53  DGIAAVVDKDVITLRELRDASQRIAGELKAR-----GIQVPDDKTLQHQVLQRLIMERVQ 107

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               + +G+  D  +V   IA         NK +       + + G+N   Y       +
Sbjct: 108 RHEADRLGIRVDDAQVDQAIATIAG----RNKITVAQLRQEIEKSGVNWDSYRKSLKDEI 163

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
               +        +  S+  +D       + R+  +     +  P               
Sbjct: 164 RSDRLRQRAVDSNIVISDAEVDAF--LKDQRRNPAFAAAPQQAQPQPQPE---------- 211

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                  APE              +  + +                 SPE       +  
Sbjct: 212 ------AAPEQAAAPAGPMLYAVAQILVRVPEG-------------SSPEQ------LAA 246

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            +K+A++    +K+G  F  LA        +L    +G    +  PD+  A +I +L +K
Sbjct: 247 LRKKAEDLLARVKRGDDFASLAAASSDGPEALQGGVMGVRPLDGWPDL-FAKAIANL-QK 304

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G  + ++    G+ I  V +   +     +  +  +       +   + +     +E   
Sbjct: 305 GQISGLLQSGNGFHILKVMDRGTAQPAPSRTARAPVPTPAPQPRPQPQAQAPQGPVEVMQ 364

Query: 396 ALG-----TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
                    +   +S  +    ++         D K  ++A   Y +       G    L
Sbjct: 365 THARHILIKTSTVMSDEQARQRLEQVRQRLVAGDAKFDDMARQ-YSQDATAPQGGDLGWL 423

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
           +   TV   + +   ++  E            L  V++  +   T +    KA Q + E 
Sbjct: 424 NPGETVPPFEAAMNALKPGEISQPIQTPFGWHLIQVEERRQHDATDDLARMKARQTLFER 483

Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
            +    F D    L A     N++ + D  N+
Sbjct: 484 -RAQPAFEDWLDQLRAQAYIDNRLEKQDRINQ 514


>gi|320179614|gb|EFW54563.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii ATCC
           9905]
          Length = 428

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGKK-FIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTAFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--AFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|255066985|ref|ZP_05318840.1| SurA/PPIASE domain protein [Neisseria sicca ATCC 29256]
 gi|255048810|gb|EET44274.1| SurA/PPIASE domain protein [Neisseria sicca ATCC 29256]
          Length = 331

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 89/263 (33%), Gaps = 32/263 (12%)

Query: 157 KMLSRTDVVGMFVGG----MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
           +++++  +            + + +  D+ ++          +++       I   ++A 
Sbjct: 64  EVITQRQLAHAIAEARQHLPKGTQISEDELRQQVLAQLVNQSLIIQAGKRRNIQA-TDAE 122

Query: 213 LTQWFEK-----YKDNYRAPEYK-RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           +     +             E    I           +   +S+ E+ +  E+ +++  +
Sbjct: 123 IDAVIAQTPSLKNPSAQTRREIADTIIMEKVRQQAVMQNSRVSDAEVNSFIERARQQGVA 182

Query: 267 -PE-----IRTVEQLVFPN---------QKEADEAFQSLKKGKKFIQLAEEQ---GKSLS 308
            PE       + + ++            +    + +   + G  F  LA +    G + S
Sbjct: 183 LPEGEPMRQYSAQHILIKADNDNAAAGAESTIRKIYAQARSGADFAGLARQYSQDGSANS 242

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
              LG F+   +      +++  L K G  +P +   FG+ I  +++++ + T   +  +
Sbjct: 243 GGDLGWFADGMMV-APFEEAVHKL-KPGQISPPVRTQFGWHIIKLNDVRDAGTPE-ERQR 299

Query: 369 KDIANQMRITKASEKVKEDYKRL 391
             +   M   KA +      + L
Sbjct: 300 NAVRQYMSGQKAQQATANLLRDL 322



 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/98 (10%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                     + +      ++  +    + +  G  ++ +      L +++L  LV+ + 
Sbjct: 54  SDGIAAIADNEVITQRQLAHAIAEARQHLPK--GTQISEDE-----LRQQVLAQLVNQSL 106

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
           + Q  +   ++A    +   IA++P       +   ++
Sbjct: 107 IIQAGKRRNIQATDAEIDAVIAQTPSLKNPSAQTRREI 144


>gi|207727966|ref|YP_002256360.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia
           solanacearum MolK2]
 gi|206591209|emb|CAQ56821.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia
           solanacearum MolK2]
          Length = 473

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/408 (11%), Positives = 113/408 (27%), Gaps = 66/408 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +     ++        +  +   +    RA  +G   ++L+ L+     
Sbjct: 66  DEVVAVVNTDIITRRELLDRADLVERTLQAQNRPM--PARADLLG---EVLEQLILERVQ 120

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G+      V   +        + N  S     S+LA+ G+   +Y +   + +
Sbjct: 121 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLAQSGLAYDKYREDLRQEI 176

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211
               +    V   ++  +  +D              +  +V  I++      +    + A
Sbjct: 177 LLARLRDREVDSKVQVFDGEIDNFLAQQGGGATGEAQEYNVAQILVPVAEDASAEQKAAA 236

Query: 212 ---------------VLTQWFEKY--------------KDNYRAPEYKRISYILFDVHEK 242
                             +                   +   R P     + +     + 
Sbjct: 237 RGKAENLLKQAQGGADFAKLARDNSSGPEAAQGGELGLRSIGRLPTQFANAVVDLKPGQL 296

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQK--EADEAFQSLKK--- 292
             ++  S          +K    +          V  ++        AD+A + L     
Sbjct: 297 AGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGPTMSADDARRQLAGLRD 356

Query: 293 ----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
               G  F   A    +  S      LG  S   +       ++ +L K G+ +  +   
Sbjct: 357 RIVHGYDFSDAARRYSQDTSASAGGELGWVSPGQLV-PEFEQAM-NLLKPGEVSQPVQSQ 414

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           FG  +  V   + +        +    + +R  K     ++  ++L +
Sbjct: 415 FGVHLIQVEGRRDAEV-PVDRQRDYARSVIREQKVQAAYEDWLRQLRD 461


>gi|308066877|ref|YP_003868482.1| Parvulin-like peptidyl-prolyl isomerase [Paenibacillus polymyxa
           E681]
 gi|305856156|gb|ADM67944.1| Parvulin-like peptidyl-prolyl isomerase [Paenibacillus polymyxa
           E681]
          Length = 372

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/325 (12%), Positives = 98/325 (30%), Gaps = 46/325 (14%)

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM----FVGGMRPSNLLLDQAK 183
           K    + + F   ++       EY         R  +V       +   +  +   +Q  
Sbjct: 53  KGGTITENEFNQEISMMKFLYPEYEAALASDQVREQIVKQEVVYKLLAAKADDKAKEQGA 112

Query: 184 RFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +   E        + +       +    +   +  +F                       
Sbjct: 113 KQGNEQLEQYKKSVGDDKFKTFLSDKKLTEQGVKDYF-----------------TRVMTV 155

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAFQ 288
              +  ++++D+L+ E+EKNK+++ +  +R V  + F + K             A E   
Sbjct: 156 INSETNKVTDDQLKQEFEKNKDQFTTATVRHVL-INFQDPKTKKQRKKEDALKLAKEVKA 214

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGS 345
            L  G  F  +A++  +     S G   +         +  ++             +   
Sbjct: 215 KLDGGADFATIAKKYSEDPGSASNGGLYENASVAQWVPAFKEAA-ETQPINKIGEPVETE 273

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           +GY +  V +       +F ++K +  + ++   A E ++   +     L L  ++ ++ 
Sbjct: 274 YGYHVIKVESRNE---PTFDKLKDNEKSALKNKLAGESIQNFTENDLAKLDLKINLPKVP 330

Query: 406 RREKIVSID--LPLVDFAGKDVKGK 428
             ++              G    G 
Sbjct: 331 ATQEKSGATSGAGSTTTPGATTNGT 355


>gi|309807374|ref|ZP_07701339.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 01V1-a]
 gi|309810061|ref|ZP_07703907.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners SPIN
           2503V10-D]
 gi|312872215|ref|ZP_07732288.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873587|ref|ZP_07733634.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           2052A-d]
 gi|308169383|gb|EFO71436.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 01V1-a]
 gi|308169560|gb|EFO71607.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners SPIN
           2503V10-D]
 gi|311090840|gb|EFQ49237.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           2052A-d]
 gi|311092299|gb|EFQ50670.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           2062A-h1]
          Length = 297

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 15/170 (8%)

Query: 221 KDNYRAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + N   PE  +  I   L      +    I+  + +  +++ + K        V+ ++  
Sbjct: 99  QQNGMTPEAYKESIQTNLLLQAALKDIKPITKAQEKKAWKEYQPK------VRVQHILVE 152

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY-----IPDVSLADSIFSLA 333
            +  A +  + L KG  F  LA++              + +       D    ++ F L 
Sbjct: 153 KEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGKIEPFDSSDTTLDADFKEAAFKLK 212

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
                   +   FGY I  +  IK     SFQ  K +I  ++    A ++
Sbjct: 213 TGEYTKKPVKTQFGYHIIKM--IKHPSKGSFQSHKSEIITRIYQKMAQDQ 260



 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 51/187 (27%), Gaps = 37/187 (19%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +L   F       AL +   S TV +    K+    F N                    +
Sbjct: 11  LLIAAFSGV----ALTATGCSKTVANYKGGKITQEDFYN--------------------K 46

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
            +     + IL N++   TL Q     G +    +V          +    K     F  
Sbjct: 47  VKKSPAGQAILANMIINRTLQQQ---YGSQVSKKKVNTA-------YDNARKQYGARFEM 96

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L + G+  + Y +     L    +          +     +A + Y     V +I++  
Sbjct: 97  VLQQNGMTPEAYKESIQTNLL---LQAALKDIKPITKAQEKKAWKEYQPKVRVQHILVEK 153

Query: 200 RHVPAIA 206
                  
Sbjct: 154 EDTAKKV 160



 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 15/159 (9%)

Query: 483 LTDVKKDWKT----VKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-- 533
               KK WK     V+    +  K   A +++ E  K G +F+D+ K       T+    
Sbjct: 130 KAQEKKAWKEYQPKVRVQHILVEKEDTAKKVIEELGK-GASFKDLAKKYSTDTGTSKNAG 188

Query: 534 -INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQE-KDKF 590
            I   D+ +     D     F          P++    Y + K + +   G  Q  K + 
Sbjct: 189 KIEPFDSSDTTLDADFKEAAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGSFQSHKSEI 248

Query: 591 ISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627
           I+ + Q M +D  ++ SV+  +  + +V + DN ++  L
Sbjct: 249 ITRIYQKMAQDQNVIKSVLGVVLKRANVNIKDNDLKNVL 287


>gi|304382090|ref|ZP_07364601.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
 gi|304336688|gb|EFM02913.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
          Length = 473

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 20/181 (11%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKFI 297
             E +  YE+ + +     +     +     + A            D  + +L+ G  F 
Sbjct: 107 EAEARKIYEQRRAQIGDKGLIHPAHIFIRVPQNAPKEALDRAKQRIDSIYAALRGGADFA 166

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD---SIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            LAE+  +       G     + P  +L D   + + L K G+  P +    GY I  + 
Sbjct: 167 TLAEKYSEDPMSARQGGALPWFAPGETLEDFEKTAYRL-KTGETAPPMLSFAGYHIIRML 225

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           + K      F E+K DI   ++     EK+ +  +RL+E      +    ++     + +
Sbjct: 226 DRK--QMEPFDELKADIIRALKTRNIREKIAD--ERLKEMAETSKTGKTEAQIMDEKAAE 281

Query: 415 L 415
           L
Sbjct: 282 L 282



 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 49/158 (31%), Gaps = 10/158 (6%)

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
              +A ++ K+    +   L  G     ++ +     +             G+ +     
Sbjct: 140 APKEALDRAKQRIDSIYAALRGGADFATLAEKYSEDPMSARQGGALPWFAPGETLEDFEK 199

Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
               L           +     L    Y  +++ +    +    +E+  D+ +  KT   
Sbjct: 200 TAYRLKT--------GETAPPMLSFAGYHIIRMLDRK--QMEPFDELKADIIRALKTRNI 249

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
            E+++ +  + + E SK GK    I     A L    Q
Sbjct: 250 REKIADERLKEMAETSKTGKTEAQIMDEKAAELSEKEQ 287


>gi|269986643|gb|EEZ92924.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Parvarchaeum acidiphilum ARMAN-4]
          Length = 91

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
           +      ++   Q  A    + + KG+ F +LAEE     S      LG F +  +    
Sbjct: 3   DKIRCAHILVKKQSLAYSILERINKGESFSKLAEEFSIDSSRRRGGELGYFGRGIMVK-E 61

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAH 352
              + FSL  KG  +  I   FGY I  
Sbjct: 62  FEKAAFSL-NKGQISQPIKTQFGYHIIK 88


>gi|83720338|ref|YP_441133.1| survival protein SurA [Burkholderia thailandensis E264]
 gi|257140205|ref|ZP_05588467.1| survival protein SurA, putative [Burkholderia thailandensis E264]
 gi|122070640|sp|Q2T116|SURA_BURTA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|83654163|gb|ABC38226.1| survival protein SurA, putative [Burkholderia thailandensis E264]
          Length = 448

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 39  DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D+  V   + R      + N    D + +R+  +G+    ++      L
Sbjct: 94  VQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDLFVRDARTEL 149

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211
             + +    V   +  S+  +               ++  +++I +        AD   A
Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGAQQDLRLEHIFVKAPTNAPQADIDAA 209

Query: 212 VLTQWF-----------------------EKYKDN---YRAPEYKRISYILFDVHEKEKK 245
                                        +  K     ++AP       +      +  +
Sbjct: 210 QKKAEGLLQQALASGTNFERLAKSQSEADDAKKGGDLGFKAPSSLPSDVVDAVSKLRPGE 269

Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286
           +  +   +   +E          +N           V  ++       ++ +A +     
Sbjct: 270 VNPTLIRVPDGFEIVRLVDRRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 330 RRQIEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNAL-QDGQVSNPVR 387

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436


>gi|325913389|ref|ZP_08175756.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners UPII
           60-B]
 gi|329919662|ref|ZP_08276640.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners SPIN
           1401G]
 gi|325477315|gb|EGC80460.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners UPII
           60-B]
 gi|328937314|gb|EGG33738.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners SPIN
           1401G]
          Length = 297

 Score = 81.2 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 15/170 (8%)

Query: 221 KDNYRAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + N   PE  +  I   L      +    I+  + +  +++ + K        V+ ++  
Sbjct: 99  QQNGMTPEAYKESIQTNLLLQAALKDIKPITKAQEKKAWKEYQPK------VRVQHILVE 152

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY-----IPDVSLADSIFSLA 333
            +  A +  + L KG  F  LA++              + +       D    ++ F L 
Sbjct: 153 KEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGKIEPFDSSDTTLDADFKEAAFKLK 212

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
                   +   FGY I  +  IK     SFQ  K +I  ++    A ++
Sbjct: 213 TGEYTKKPVKTQFGYHIIKM--IKHPSKGSFQSHKSEIITRIYQKMAQDQ 260



 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 15/159 (9%)

Query: 483 LTDVKKDWKT----VKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-- 533
               KK WK     V+    +  K   A +++ E  K G +F+D+ K       T+    
Sbjct: 130 KAQEKKAWKEYQPKVRVQHILVEKEDTAKKVIEELGK-GASFKDLAKKYSTDTGTSKNAG 188

Query: 534 -INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQE-KDKF 590
            I   D+ +     D     F          P++    Y + K + +   G  Q  K + 
Sbjct: 189 KIEPFDSSDTTLDADFKEAAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGSFQSHKSEI 248

Query: 591 ISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627
           I+ + Q M +D  ++ SV+  +  + +V + DN ++  L
Sbjct: 249 ITRIYQKMAQDQNVIKSVLGVVLKRANVNIKDNDLKNVL 287



 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 51/187 (27%), Gaps = 37/187 (19%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +L   F       AL +   S TV +    K+    F N                    +
Sbjct: 11  LLIAAFSGV----ALTATGCSKTVANYKGGKITQEDFYN--------------------K 46

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
            +     + IL N++   TL Q     G +    +V          +    K     F  
Sbjct: 47  VKKSPAGQAILANMIINKTLQQQ---YGSQVSKKKVNTA-------YDNARKQYGARFEM 96

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L + G+  + Y +     L    +          +     +A + Y     V +I++  
Sbjct: 97  VLQQNGMTPEAYKESIQTNLL---LQAALKDIKPITKAQEKKAWKEYQPKVRVQHILVEK 153

Query: 200 RHVPAIA 206
                  
Sbjct: 154 EDTAKKV 160


>gi|313143878|ref|ZP_07806071.1| cell binding factor 2 [Helicobacter cinaedi CCUG 18818]
 gi|313128909|gb|EFR46526.1| cell binding factor 2 [Helicobacter cinaedi CCUG 18818]
          Length = 296

 Score = 81.2 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 63/159 (39%), Gaps = 13/159 (8%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQLAE 301
            +++ +++  Y+ N+  + + E      ++   + EA +  + L K       KFI+LA 
Sbjct: 133 SVNDAQIKEIYKNNEGMFINQE-MHARHILVKTESEAKDIIKELDKAGKKAESKFIELAN 191

Query: 302 EQGKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
            +          +   LG+F +  +     A++  +L         +   FGY + ++  
Sbjct: 192 AKSTDPASKQAKNGGDLGTFQRN-VMHPDFANAASNLKPGTYTQEPVQTPFGYHVIYLIK 250

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
                 + + E KK I  Q+++      + +  + L E 
Sbjct: 251 KSEPKIIPYNEAKKIIEEQIKMQNVQGGMMQKIQALREK 289


>gi|300692473|ref|YP_003753468.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Ralstonia
           solanacearum PSI07]
 gi|299079533|emb|CBJ52211.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Ralstonia
           solanacearum PSI07]
          Length = 475

 Score = 81.2 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/409 (11%), Positives = 111/409 (27%), Gaps = 67/409 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +     ++        +  +   +    RA  +G   ++L+ L+     
Sbjct: 67  DEVVAVVNTDIITRRELLDRADLVERTLQSQNRPM--PARADLLG---EVLEQLILERVQ 121

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G+      V   +        + N  S     S+L + G+   +Y +   + +
Sbjct: 122 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVSQLKSKLVQSGLAYDKYREDLRQEI 177

Query: 160 SRTDVVGMFVGGMRP------SNLLLDQ---AKRFYFENRSVDYIVLNNRHVPAIADPSN 210
               +    V            N L  Q   A     +  +V  I++      +    + 
Sbjct: 178 LLARLRDREVDSKVQVFDGEIDNFLAQQGGAAASGGSQEYNVAQILVPVAEDASAEQKAA 237

Query: 211 A---------------VLTQWFEKYKDN--------------YRAPEYKRISYILFDVHE 241
           A                  +    +                  R P     + +     +
Sbjct: 238 ARGKAEGLLKQVQGGADFAKLARDHSGAPEAAQGGELGLRPIGRLPAQFANAVVDLKPGQ 297

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSP-----EIRTVEQLVFPNQKE--ADEAFQSLKK-- 292
              ++  S          +K    +          V  ++        AD+A + L    
Sbjct: 298 VVGQVIESPAGFHVLKLVDKRVQGTAITAKVAQTQVRHILIKTGPTMPADDARRQLAGLR 357

Query: 293 -----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
                G  F   A    +  S      LG  S   +       ++ +L K G+ +  +  
Sbjct: 358 DRIVHGYDFGDAARRYSQDASASAGGELGWVSPGQLV-PEFEQAM-NLLKPGEVSQPVQS 415

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            FG  +  V   + +        +    + +R  K     ++  ++L +
Sbjct: 416 QFGVHLIQVEGRREAEV-PVDRQRDYARSAIREQKIQAAYEDWLRQLRD 463



 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 113/369 (30%), Gaps = 45/369 (12%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L R         G+R S+  +D+A     +  ++    L ++ V +            ++
Sbjct: 117 LERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVSQLKSKLVQSGLA---------YD 167

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP--EIRTVEQLV 276
           KY+++ R      I        E + K+++ + E+     +      S   +   V Q++
Sbjct: 168 KYREDLRQ----EILLARLRDREVDSKVQVFDGEIDNFLAQQGGAAASGGSQEYNVAQIL 223

Query: 277 FPNQKEADE------------AFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIP 321
            P  ++A                + ++ G  F +LA +   +        LG      +P
Sbjct: 224 VPVAEDASAEQKAAARGKAEGLLKQVQGGADFAKLARDHSGAPEAAQGGELGLRPIGRLP 283

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAH-VSNIKPSFTVSFQEVKKDIANQMRI--- 377
               A+++  L        VI    G+ +   V        ++ +  +  + + +     
Sbjct: 284 -AQFANAVVDLKPGQVVGQVIESPAGFHVLKLVDKRVQGTAITAKVAQTQVRHILIKTGP 342

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
           T  ++  +     L + +  G    + +RR              G    G+ V       
Sbjct: 343 TMPADDARRQLAGLRDRIVHGYDFGDAARRYS-QDASASAGGELGWVSPGQLVPEFEQAM 401

Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
            LL        P      V    G    +Q++    A    ++      +   +  K   
Sbjct: 402 NLLK-------PGEVSQPVQSQFG-VHLIQVEGRREAEV-PVDRQRDYARSAIREQKIQA 452

Query: 498 EVSSKANQL 506
                  QL
Sbjct: 453 AYEDWLRQL 461


>gi|241765841|ref|ZP_04763778.1| SurA domain protein [Acidovorax delafieldii 2AN]
 gi|241364240|gb|EER59412.1| SurA domain protein [Acidovorax delafieldii 2AN]
          Length = 466

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 57/403 (14%), Positives = 117/403 (29%), Gaps = 67/403 (16%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + V  +       +    ++Q+ G  +         L +++L+ L+      Q 
Sbjct: 64  VAVVNSEPVTNNEVRARAVRVEQQMAQQ-GSPLPPRDL----LAREVLERLIVEKIQLQL 118

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
             + G+  D   V            K N+ S D    RLA +GI+++ + +     L   
Sbjct: 119 AREGGIRVDDYAVGQAEESV----AKQNRVSVDEMHRRLAADGISKERFREELRNQLLLL 174

Query: 163 DVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA--DPSNAVLTQW--- 216
            +        +R S+L +DQ  R          + +N  H+  +   + +   + +    
Sbjct: 175 RLRERDVQSRVRVSDLDVDQYLREQQAGADASKLEINLGHILVVVPENATPQQVEERRVR 234

Query: 217 -------------FEKYKDNY-------------------RAPEYKRISYILFDVHEKEK 244
                        F      +                   R PE    +     +     
Sbjct: 235 AQQAADKVRAGEDFAAVAREFSDAAEAKTSGGLLGLRPADRYPELFVSATAQLPLGGIAG 294

Query: 245 KIEISNDELQAEYEKNKEKYFSPE---IRTVEQLVF----------PNQKEADEAFQSLK 291
            +  S          +K     P          ++              + AD   + L 
Sbjct: 295 PVR-SPAGFHVLKLVDKTSAGVPTVAIQSHARHILLRTGPQLTESAAAARLADYRRRVLA 353

Query: 292 KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
               F +LA E  +  S      LG  +           ++ +L K GD +  +   FG 
Sbjct: 354 GQADFAELAREHSQDGSAKQGGDLGWSNPGRYV-PEFEQAMNAL-KPGDVSEPLVSRFGV 411

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            +  +   + +     ++ +    + +R  K  E      + L
Sbjct: 412 HLIQLLERRETKLTQREQ-RDMARDTVREKKVEEAFANWMQEL 453



 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 99/309 (32%), Gaps = 38/309 (12%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPN 279
           K+ +R     ++  +     + + ++ +S+ ++     + +    + +    +  ++   
Sbjct: 160 KERFREELRNQLLLLRLRERDVQSRVRVSDLDVDQYLREQQAGADASKLEINLGHILVVV 219

Query: 280 QK------------EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSL 325
            +             A +A   ++ G+ F  +A E   +    + G        D    L
Sbjct: 220 PENATPQQVEERRVRAQQAADKVRAGEDFAAVAREFSDAAEAKTSGGLLGLRPADRYPEL 279

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ---EVKKDIAN---QMRITK 379
             S  +    G     +    G+ +  + +   +   +       +  +     Q+  + 
Sbjct: 280 FVSATAQLPLGGIAGPVRSPAGFHVLKLVDKTSAGVPTVAIQSHARHILLRTGPQLTESA 339

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           A+ ++ +  +R+   LA      E++R               G          +P  EQ 
Sbjct: 340 AAARLADYRRRV---LAGQADFAELAREHSQDG----SAKQGGDLGWSNPGRYVPEFEQA 392

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAE 497
           +  +        K   V+ P  S   V + + +  R+ KL   E     +   +  K  E
Sbjct: 393 MNAL--------KPGDVSEPLVSRFGVHLIQLLERRETKLTQREQRDMARDTVREKKVEE 444

Query: 498 EVSSKANQL 506
             ++   +L
Sbjct: 445 AFANWMQEL 453


>gi|33594222|ref|NP_881866.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
           Tohama I]
 gi|81713229|sp|Q7VU12|SURA_BORPE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|33564297|emb|CAE43595.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
           Tohama I]
 gi|332383636|gb|AEE68483.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
           CS]
          Length = 519

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 101/321 (31%), Gaps = 54/321 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V +  +       + K     + ++ G  V  ER     L K++L  L+     
Sbjct: 55  DGIAAIVNKDVITLREVREASKLASADLQKR-GIQVPDER----TLQKQVLQRLIMERLE 109

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+  D  +V   I          NK +     + + + G+  ++Y       +
Sbjct: 110 RQEADRMGIRVDEAQVDQAINMIAS----RNKITPAAMRAEIEKSGVTWEQYRKSLRDDI 165

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF-E 218
               +                         R+VD          A    S+A +  +  +
Sbjct: 166 RMDRLR-----------------------QRAVD----------ANIIISDAEVDAFLKD 192

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + ++   A   +  +        ++         + A+      +  SP+       V  
Sbjct: 193 QERNPAAAQATRAPAPQQPQPQPRQPAQSGPAMLVLAQILVRVPEGSSPDQ------VAA 246

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            +K+A+      KKG  F  LA        +L    +G+   +  PD+    +  SL+  
Sbjct: 247 LRKKAEGLLARAKKGDDFASLAAANSDGPEALQGGMMGARPLDGWPDL-FVKAAGSLS-A 304

Query: 336 GDFTPVIHGSFGYVIAHVSNI 356
           G  + ++    G+ I  V + 
Sbjct: 305 GQVSGLVQSGNGFHILKVVDR 325



 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 49/147 (33%), Gaps = 16/147 (10%)

Query: 269 IRTVEQLVFPN-----QKEA----DEAFQSLKKGK-KFIQLAEEQGKS---LSDISLGSF 315
                 ++          +A    ++  + L+ G  KF  +A +  +         LG  
Sbjct: 366 QTHARHILIKTSTVMTDDQARQRLEQIRERLQGGAVKFEDMARQYSQDSTAPQGGDLGWV 425

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           +           ++ +L +  + +P +   FG+ +  V   +    VS +  +      +
Sbjct: 426 NPGDTV-PPFEAAMNAL-QPNEISPPMLSPFGWHLIQVLERRE-HDVSDEVQRMRARQLL 482

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMD 402
              +A    ++  ++L     +   ++
Sbjct: 483 FERRAVPAFEDWLEQLRSQAFIDNRLE 509


>gi|329925504|ref|ZP_08280378.1| PPIC-type PPIASE domain protein [Paenibacillus sp. HGF5]
 gi|328939787|gb|EGG36127.1| PPIC-type PPIASE domain protein [Paenibacillus sp. HGF5]
          Length = 361

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 108/311 (34%), Gaps = 31/311 (9%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I EKE+      +   +     F+        L  Q   + +      Y   +++   A 
Sbjct: 52  ITEKEFDLEQRMIQFMSPEYAQFLQMDEFKEYLAKQGVAYEYL-----YAKADDKAKEAA 106

Query: 206 ADPSNAVLTQW--------FEKYKDNYRAPEYKRISYILFDVHEKE-KKIEISNDELQAE 256
              ++ +L Q         F+   ++ +  E    +Y+L  +   E +K +++ ++++ E
Sbjct: 107 EKQTDDLLKQQKAGMGEEQFKAALESQKLTEDDLKNYMLRVMTVMEHEKNQVTEEDIKKE 166

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQ----------KEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++ NK+ Y +  +R V       +          K A E    L KG+ F  LA+E  + 
Sbjct: 167 FDANKKDYTNISVRHVLIAFQDAEGKERPEGEALKIAKEVQSKLNKGEDFAALAKEYSQD 226

Query: 307 LSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                 G   +            +   +L +    +  +   +GY +  V   +      
Sbjct: 227 PGSKDSGGLYENKPAGSWVPQFKEKALTL-ELNKISDPVETDYGYHVMKVEKREEVTYDK 285

Query: 364 F-QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
              + K+ I +++   K    ++ +   L E + L  S  E + +    + D        
Sbjct: 286 LPADQKEGIRSELASAKIDNFMQNELNNLIESMNLPKS--ENADKPAEGTGDQKTDGTTD 343

Query: 423 KDVKGKEVAAI 433
           K  +G +    
Sbjct: 344 KPAEGDQTPDA 354


>gi|254448730|ref|ZP_05062188.1| foldase protein PrsA, putative [gamma proteobacterium HTCC5015]
 gi|198261738|gb|EDY86025.1| foldase protein PrsA, putative [gamma proteobacterium HTCC5015]
          Length = 306

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 11/170 (6%)

Query: 247 EISNDELQAEYEKNKEKYFSPE----IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           ++S+++L+AEY++  +                ++  +++EA    + L  G  F  LAEE
Sbjct: 123 DVSDEDLRAEYDEQVKMMEEASGGGSEFNASHILVESEEEAKALIKQLDDGADFATLAEE 182

Query: 303 QG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA---HVSNI 356
                 + S  SLG  + +   + + A ++  L         +   FG+ +         
Sbjct: 183 NSVGPSASSGGSLGWATADTYVE-AFATALEQLEDGSYTAAPVETQFGWHVILRSESRES 241

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           +     +F  VK  +   +   +    ++    +    +    S  E S 
Sbjct: 242 QAPEAPAFDMVKSQLEKVVMQKRMQSYMENLRNKANVVIVGQDSDSEASS 291


>gi|288818385|ref|YP_003432733.1| hypothetical protein HTH_1074 [Hydrogenobacter thermophilus TK-6]
 gi|288787785|dbj|BAI69532.1| hypothetical protein HTH_1074 [Hydrogenobacter thermophilus TK-6]
 gi|308751978|gb|ADO45461.1| conserved hypothetical protein [Hydrogenobacter thermophilus TK-6]
          Length = 276

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 79/205 (38%), Gaps = 11/205 (5%)

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR--ISYILFD---VHEKEKKI 246
           V  +++         +   +   ++  K   N    E  R  +   +     +    K I
Sbjct: 65  VRSLIIQQEAKKMGINVKESEFKEYITKNIGNVPLSETVRELVKTEILTNKILDRIAKDI 124

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++S+ E+ A Y  N   +  P    V +++  +   A+E +  L KG + ++        
Sbjct: 125 DVSDREITAYYYLNLRDFKLPAQVLVRRVLVEDLDTANEVYYRLSKGAESLEGLR----G 180

Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
           + +     +S + +P+  +        + G  +  I    GY+I  V + +    +S +E
Sbjct: 181 VKEGDPMWYSIQTLPE--IVKQQLYPYEVGKTSKPIDTGSGYLILKVIDRRGDGILSLEE 238

Query: 367 VKKDIANQMRITKASEKVKEDYKRL 391
            K  +  ++   K  E  K+ ++++
Sbjct: 239 AKPVVKEKLLKEKRQEVFKKWFQKV 263


>gi|307565549|ref|ZP_07628029.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307345708|gb|EFN91065.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 715

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 86/276 (31%), Gaps = 38/276 (13%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG-----SSTVVSVGRQKVPFSSF 56
           L  IR  S+  +  I + +  + FL   + +   S SG      S V  +  +K+    F
Sbjct: 4   LGKIR--SKGTLLMIVIGLALLGFL---VEEGARSCSGLKNEQRSQVGEILGEKISNQDF 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                +    I   +     SE+     +  ++   LVS   L+   + +GL      + 
Sbjct: 59  QKLIDEYQSAIKLTMQRDNLSEQ-ELNQVKDQVWHQLVSNRVLEADAKKVGLTVTEQEIQ 117

Query: 117 G--------EIARSPLFHGKDNKFSHDVFVSRL----AREGINEKEYIDH---------- 154
                     +A++P  + +  +F  ++    L      +  N  +              
Sbjct: 118 NVLSDGTNPALAQTPFVNQQTGRFDVNILKQFLDSYNKAKDTNSPQLEQMQSIYNYWLFV 177

Query: 155 ---YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSN 210
                  L       +    +  + +    A +   E   +    L    V  A    S+
Sbjct: 178 EKNLRSQLLGQKYQSLLASCVLSNKVEAKLAFKDNNEEAQIQLATLPYSSVKDADIKISD 237

Query: 211 AVLTQWFEKYKDNYR-APEYKRISYILFDVHEKEKK 245
             L   +++ K  +R A E + + Y+   +      
Sbjct: 238 DDLKAKYDELKGMFRQAVESRDVKYVDVQIKASAAD 273



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 111/331 (33%), Gaps = 33/331 (9%)

Query: 262 EKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
            K   P+     Q+         ++ +AD   ++L  G  F+ +A+  G++ +   L   
Sbjct: 353 SKEQLPDSVEFRQIQVVANTPEESKVKADSIQKALAGGADFVTIAKRYGQTGAKAWLTGQ 412

Query: 316 SKEYIPDVSLADSIFSLA-KKGDFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIA 372
             E  P +   +  F L+  KG+   + + +   G VI  V   +   T S   V   I 
Sbjct: 413 QYESAPSIGQDNRTFLLSLLKGEVNAIQNVALTQGNVIVEVLEKRAMTTKSVAAV---IK 469

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
             +  +K +  +   Y +  EF+A  T++ ++ +        +  +   G       VA 
Sbjct: 470 KAIDFSKETRGI--AYNKFSEFVAKSTTLADLQKNAGRYGYLVKDLK--GITTAEHYVAG 525

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL--EEVLTDVKKDW 490
           I      L  +F               +   + + +        R     EV   +K++ 
Sbjct: 526 IRGTRDALKWIFEAKQGDISPLFEVGDNDHMLVLVLNGIHEQGYRPWNDAEVKEILKREV 585

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
              K AE + +K         K  K+     +  GA +   NQI    +         + 
Sbjct: 586 MKDKKAEVLMAK--------LKGVKSIAA-AQAKGAKVSIVNQIT-FASPAFIQSVGAVE 635

Query: 551 QVFSGPV-----EMVKCFPIENGLSYVVFKV 576
              SG V           P++      VF+V
Sbjct: 636 PALSGAVAATEQGKFSKKPVKGNAGVYVFQV 666


>gi|189220090|ref|YP_001940730.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum
           infernorum V4]
 gi|189186948|gb|ACD84133.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum
           infernorum V4]
          Length = 283

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 7/231 (3%)

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
             ++ +  G     + +L + K+          I      +          +    EK K
Sbjct: 39  DQLLAIVNGVEIRKSYVLAELKKAGIVKPDSQAIQNALASLVQQEILYQEAMKLEMEKSK 98

Query: 222 DNYRAPEYK-RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           +  RA E   R +     V +K +    S  EL+  Y +  +     E + +  +V P +
Sbjct: 99  ELLRAQEEFNRKALTELVVQKKIRSQPPSEGELRLRYSQLLKSLPKEEYK-IRHIVLPTR 157

Query: 281 KEADEAFQSLKKGKKFIQLAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           ++A E  + LKKG+ F  LA E   +  +     LG  +K  +   +   S+    K G 
Sbjct: 158 RKALEVMERLKKGENFSLLAMESLEKQTADRGGELGWQNKATLVLSAY--SLIQKLKPGQ 215

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
               I  S G+ +  +  ++P    S++E+K  +  Q+      + V+E  
Sbjct: 216 VGGPILSSMGWELIELLAVRPLRVPSYEELKPQLIQQIEQENLKKYVQELI 266


>gi|78046458|ref|YP_362633.1| peptidylprolyl isomerase precursor [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325928237|ref|ZP_08189442.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans
           91-118]
 gi|121956510|sp|Q3BX80|SURA_XANC5 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|78034888|emb|CAJ22533.1| peptidylprolyl isomerase precursor [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325541397|gb|EGD12934.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans
           91-118]
          Length = 463

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/408 (10%), Positives = 106/408 (25%), Gaps = 72/408 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S    + +      + +   +   +      L +++L+ LV     
Sbjct: 32  DRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLPPDDV-----LQRQVLERLVLVKLQ 86

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +  G+      +   IA       + N  + D    +LA +G+   ++       +
Sbjct: 87  VSRADGNGIRVSDEELNRAIASI----AQQNGTTVDGLRQKLAADGMGYADFRASVRDEI 142

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL----- 213
               +   F    +  S   +D A     +  +     L +  +      +   +     
Sbjct: 143 IVQRLRQSFAQSRISVSEGEVDTA--LAQQAATGSQYHLAHILIGLPEGATAEQIATGQK 200

Query: 214 -----TQWFEKYKDNYRAPEYK-----------RISYILFDVHEKEKKIEISN------- 250
                    +K + ++ A   +            + +   D         I +       
Sbjct: 201 KVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSLDEIPNAFAQLIRDMQPGQVA 260

Query: 251 --------------DELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAF 287
                          E++      ++K  +        ++            + + D   
Sbjct: 261 GPLRGPSGFQLLKLVEMRDANAGGEKKMVT--EYHARHILVRIGENQTEAQAKAKIDTIR 318

Query: 288 QSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
             +  G  F   A+E  +  +       LG F  +          + SL   G  +    
Sbjct: 319 ARIVGGADFQATAKESSEDTNSRGQGGDLGWFPADAF-GPDFGKQVESLT-DGAVSEPFR 376

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              G+ I      + +   S +  +  +   +   K  E+     + L
Sbjct: 377 TQAGWHIVQRVGSRQTDV-SAENQRAQVRETIGRRKLEEEYNRYLQEL 423


>gi|33603075|ref|NP_890635.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           bronchiseptica RB50]
 gi|81714068|sp|Q7WG19|SURA_BORBR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|33568706|emb|CAE34464.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           bronchiseptica RB50]
          Length = 519

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 101/321 (31%), Gaps = 54/321 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V +  +       + K     + ++ G  V  ER     L K++L  L+     
Sbjct: 55  DGIAAIVNKDVITLREVREASKLASADLQKR-GIQVPDER----TLQKQVLQRLIMERLE 109

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+  D  +V   I          NK +     + + + G+  ++Y       +
Sbjct: 110 RQEADRMGIRVDEAQVDQAINMIAS----RNKITPAAMRAEIEKSGVTWEQYRKSLRDDI 165

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF-E 218
               +                         R+VD          A    S+A +  +  +
Sbjct: 166 RMDRLR-----------------------QRAVD----------ANIIISDAEVDAFLKD 192

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + ++   A   +  +        ++         + A+      +  SP+       V  
Sbjct: 193 QERNPAAAQATRAPAPQQPQPQPRQPAQSGPAMLVLAQILVRVPEGSSPDQ------VAA 246

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            +K+A+      KKG  F  LA        +L    +G+   +  PD+    +  SL+  
Sbjct: 247 LRKKAEGLLARAKKGDDFASLAAANSDGPEALQGGMMGARPLDGWPDL-FVKAAGSLS-A 304

Query: 336 GDFTPVIHGSFGYVIAHVSNI 356
           G  + ++    G+ I  V + 
Sbjct: 305 GQVSGLVQSGNGFHILKVVDR 325



 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 49/147 (33%), Gaps = 16/147 (10%)

Query: 269 IRTVEQLVFPN-----QKEA----DEAFQSLKKGK-KFIQLAEEQGKS---LSDISLGSF 315
                 ++          +A    ++  + L+ G  KF  +A +  +         LG  
Sbjct: 366 QTHARHILIKTSTVMTDDQARQRLEQIRERLQGGAVKFEDMARQYSQDSTAPQGGDLGWV 425

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           +           ++ +L +  + +P +   FG+ +  V   +    VS +  +      +
Sbjct: 426 NPGDTV-PPFEAAMNAL-QPNEISPPVLSPFGWHLIQVLERRE-HDVSDEVQRMRARQLL 482

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMD 402
              +A    ++  ++L     +   ++
Sbjct: 483 FERRAVPAFEDWLEQLRSQAFIDNRLE 509


>gi|134293907|ref|YP_001117643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
 gi|134137064|gb|ABO58178.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
          Length = 321

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 59/157 (37%), Gaps = 15/157 (9%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----------FQSLKKGKKFI 297
           S+ E+Q+ YE+N+    +P    V Q+       AD A             +  +   F 
Sbjct: 147 SDAEIQSAYEQNRAALTTPRALHVAQIYIAVPSNADAATLEAARKRAADLANRARSGDFA 206

Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            LA    +  +  + G    F  + +   ++  +  +L K G  +  +    G+ +  + 
Sbjct: 207 ALARANSQDAASAANGGDLGFVPDSLMLPAVRQAADAL-KPGQVSAPVRTPSGFHVVKLI 265

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +++ +      +VK+ +   +R  +  +  +     L
Sbjct: 266 DVRAAAPRPLADVKEQLRTMLRAQRMQQNARTYLANL 302



 Score = 43.8 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 3/126 (2%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE--QLLFR 442
             D   LE        +   +R     ++       A     G ++  +P       + +
Sbjct: 180 NADAATLEAARKRAADLANRARSGDFAALARANSQDAASAANGGDLGFVPDSLMLPAVRQ 239

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                 P      V  P G +  V++ +   A  R L +V   ++   +  +  +   + 
Sbjct: 240 AADALKPGQVSAPVRTPSG-FHVVKLIDVRAAAPRPLADVKEQLRTMLRAQRMQQNARTY 298

Query: 503 ANQLVL 508
              L  
Sbjct: 299 LANLAA 304


>gi|325922420|ref|ZP_08184189.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
           19865]
 gi|325547117|gb|EGD18202.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
           19865]
          Length = 466

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/430 (11%), Positives = 114/430 (26%), Gaps = 68/430 (15%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +   +L +   +  ++ A  S         V    V  S    + +      + +   + 
Sbjct: 8   LLASLLVITSTVSPMASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAGRDNQLP 67

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
             +      L +++L+ LV         +  G+      +   IA       + N  + D
Sbjct: 68  PDDV-----LQRQVLERLVLVKLQVGRADSTGIRVSDEELNRAIASI----AQQNGTTVD 118

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLD----QAKRFYFENR 190
               +LA +G+   ++       +    +   F    +  S   +D    Q      +  
Sbjct: 119 GLRQKLAADGMGYGDFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQATTGSQYH 178

Query: 191 SVDYIVLNNRHVPAIADPSNAV----LTQWFEKYKDNYRAPEYK-----------RISYI 235
               +V       A    +       +    +K + ++ A   +            + + 
Sbjct: 179 LAHILVGLPEGANAEQIATGQKKVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWR 238

Query: 236 LFDVHEKEKKIEISN---------------------DELQAEYEKNKEKYFSPEIRTVEQ 274
             D         I +                      E++      ++K  +        
Sbjct: 239 SLDEIPNAFAQLIRDMQPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKLVT--EYNARH 296

Query: 275 LVF---------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIP 321
           ++            + + D     +  G  F   A+E  +  +       LG F  +   
Sbjct: 297 ILVRIGDNQTEAQAKAKIDTLRARITGGADFQATAKESSEDTNSRGQGGDLGWFPADAF- 355

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                  +  LA  G  +       G+ I      + +   S +  +  I   +   K  
Sbjct: 356 GPDFGKQVEGLA-DGAVSEPFRTQAGWHIVQRVGSRQTDV-SAESQRAQIRETIGRRKLE 413

Query: 382 EKVKEDYKRL 391
           E+     + L
Sbjct: 414 EEYNRYLQEL 423


>gi|254283287|ref|ZP_04958255.1| chaperone SurA [gamma proteobacterium NOR51-B]
 gi|219679490|gb|EED35839.1| chaperone SurA [gamma proteobacterium NOR51-B]
          Length = 435

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 53/407 (13%), Positives = 119/407 (29%), Gaps = 76/407 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S            I ++ G  + +E      L ++ LD L+  +  
Sbjct: 41  EQIVAIVDDDIILASELRERLDTLKVNIERQ-GAEMPAEDI----LVRETLDRLILESIQ 95

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+     ++   + R       +N  +   F   L  EG +  E  +   K +
Sbjct: 96  LQMGERYGIRIPDTQLDEALRRVAS----NNGLTLAQFRGALEAEGRSYAEMRESVRKEM 151

Query: 160 SRTDVV-GMFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
           +   V  G     +  S+  +D   +    +  +     +    +P  +  S A      
Sbjct: 152 TIQRVQQGNVSRNINISDAEIDNYLETEAGQELTEPQYRVFQALIPVNSTDSEAE----- 206

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------------DELQAEYEKNKEK 263
              K+ +           + D    E  + ++                ++ + +      
Sbjct: 207 RASKEAFVD----SALSAILDGQAFESAVSVTQPYAFQGGDLGWRKLSDIPSMFTAIVPT 262

Query: 264 YFSPE--------------------------IRTVEQLVFP---------NQKEADEAFQ 288
               E                             V  ++            ++ A +  Q
Sbjct: 263 LDRGETGKVESGSGFHLVHVADVRGRERVIAQTKVRHILVKPSEVRTEAETEQLAADLRQ 322

Query: 289 SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            L  G  F +LA+E  + +        LG  S   +       ++ +  +  D  P +  
Sbjct: 323 RLLDGADFAELAKEYSEDIGSAQEGGDLGWTSAGQMV-PEFEQAM-AETEVDDIAPPVRS 380

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            FG+ +  V+  +       +  +  +AN +   K  E++    +++
Sbjct: 381 QFGWHVLEVTGRRDKDVSD-EMRRNQVANYLHDAKYQEELDAWLRKI 426


>gi|332095342|gb|EGJ00365.1| chaperone surA [Shigella boydii 5216-82]
          Length = 428

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/388 (12%), Positives = 125/388 (32%), Gaps = 69/388 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNTAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-I 232
               ++   +    +N +   + L++  +P   +P++  + +   + +      + +   
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE--AESQARAIVDQARNGA 210

Query: 233 SYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE---------------- 268
            +    +     +  ++          EL   + +        +                
Sbjct: 211 DFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKV 270

Query: 269 -------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGK 305
                              ++         ++A    ++    +K GK  F   A+E  +
Sbjct: 271 NDLRGESKNISVTEVHTRHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQ 330

Query: 306 SLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   
Sbjct: 331 DPGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDK 388

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390
           +    K      +   K SE+     + 
Sbjct: 389 TDAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHTRHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|207742369|ref|YP_002258761.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia
           solanacearum IPO1609]
 gi|206593759|emb|CAQ60686.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia
           solanacearum IPO1609]
          Length = 473

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/408 (11%), Positives = 110/408 (26%), Gaps = 66/408 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +     ++        +  +   +    RA  +G   ++L+ L+     
Sbjct: 66  DEVVAVVNTDIITRRELLDRADLVERTLQAQNRPM--PARADLLG---EVLEQLILERVQ 120

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G+      V   +        + N  S     S+LA+ G+   +Y +   + +
Sbjct: 121 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLAQSGLAYDKYREDLRQEI 176

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
               +    V   ++  +  +D          + +    N   +        +   +   
Sbjct: 177 LLARLRDREVDSKVQVFDGEIDNFLAQQGGGATGEAQEYNVAQILVPVAEDASAEQKAAA 236

Query: 219 KYKDN------------------------------------YRAPEYKRISYILFDVHEK 242
           + K                                       R P     + +     + 
Sbjct: 237 RGKAESLLKQAQGGADFAKLARDSSSGPEAAQGGELGLRSIGRLPTQFANAVVDLKPGQL 296

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQK--EADEAFQSLKK--- 292
             ++  S          +K    +          V  ++        AD+A + L     
Sbjct: 297 AGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGPTMSADDARRQLAGLRD 356

Query: 293 ----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
               G  F   A    +  S      LG  S   +       ++ +L K G+ +  +   
Sbjct: 357 RIVHGYDFSDAARRYSQDTSASAGGELGWVSPGQLV-PEFEQAM-NLLKPGEVSQPVQSQ 414

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           FG  +  V   + +        +    + +R  K     ++  ++L +
Sbjct: 415 FGVHLIQVEGRRDAEV-PVDRQRDYARSVIREQKVQAAYEDWLRQLRD 461


>gi|124003471|ref|ZP_01688320.1| ppic-type ppiase domain protein [Microscilla marina ATCC 23134]
 gi|123991040|gb|EAY30492.1| ppic-type ppiase domain protein [Microscilla marina ATCC 23134]
          Length = 693

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 68/620 (10%), Positives = 171/620 (27%), Gaps = 91/620 (14%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
            + +    F++  L   +    G  S TV  +  ++V +  F N          ++ G+ 
Sbjct: 1   MIALAIAAFILTDLFGKMLQGGGPESMTVGHIQGERVSYQGFNNRVSFVEAQYQRQ-GYP 59

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           +N +   S  + +++  + +         E++G+      +   +    L     ++   
Sbjct: 60  INDQTRNS--IREQVWGDFIFEKAYQPQFEELGITVTPQEIKEILQGDSLMRDSQSQVIQ 117

Query: 135 DVFVSRLAREG-INEK---------------EYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
            +  +     G  + +               +  +   K   +     +       +   
Sbjct: 118 QLTRTFKDSTGKYSPQMAGSYWTNIPAPQRNQLREGIRKDRLQKKYTSLLQFSTYITKAE 177

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +            ++ +    V       ++A L  +   + D Y++ E + + Y   
Sbjct: 178 AKRDYTNKNTKGDFKFLYVPYSSVADSTVKVTDAELEAYMRDHADEYKSQETRSLEYYAL 237

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
            +    +                              L+    K+    F   +    F 
Sbjct: 238 SIDPSPEDST-----------------------KFANLIRQTAKD----FAKAENDSAFA 270

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +  +   +++        KE      + +++ +L K G     ++    Y I  +S+ K
Sbjct: 271 VINSDDPPNMNFQDPTKLPKE------IWETVPTLTK-GAVVGPLNNKNTYTIYKISDTK 323

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR---LEEFLALGTSMDEISRREKIVSID 414
                 +  V   +       K SE+     K    L++ L      +  +         
Sbjct: 324 ADTANYYANVSNLLIKADSTMKQSEQDSARRKAEGILKKLLDNPGDFENQANTYNTDGTK 383

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM---------- 464
                    ++K        + +     + G D        V    G ++          
Sbjct: 384 GKGGALGWSNLKT-------FVKPFSEAIKGTDKIGVIPKVVKSAYGYHIIKVVHPSTNK 436

Query: 465 WVQIKESIP---ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
             ++             ++E      K     KT EE+ + A +            +   
Sbjct: 437 LYKVATIKKTLLPGKSTIDEAFKTTDKLVNNSKTLEELRANAAKNPKLIKNTAPKLQPSA 496

Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
            NLG     + Q  R      F     + ++F       K   + +   Y++  +T +  
Sbjct: 497 TNLG-----SYQGAREIIRWAFKDETKVGEIF-------KPVELSDQNVYIIAALTGATE 544

Query: 582 GPVQEKDKFISYLTQMMNKD 601
                 +     LT  + ++
Sbjct: 545 KDELSVEANREALTNKVRQE 564


>gi|49085090|gb|AAT51251.1| PA0699 [synthetic construct]
          Length = 315

 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299
           S+ ELQA Y+ NK +   P +  V Q+         +   +K A E ++    G  F +L
Sbjct: 140 SDAELQAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELYRQAADG-DFAEL 198

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A +          G      +    L  +        K G  +  I G+ G+ +  ++  
Sbjct: 199 ARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 258

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +   +  EV+  +   +R  +  +  K     L
Sbjct: 259 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293



 Score = 38.0 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 51/131 (38%), Gaps = 12/131 (9%)

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
           + +A ++ +E Y++  +         E++R+      D P     G D+ G  + A    
Sbjct: 176 LAEARKRAQELYRQAAD-----GDFAELARKHS----DDPQTARNGGDIGG--LLAQAQL 224

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
              +     +    +    +   +G +  V++ E   AR   L+EV   +++  +  +  
Sbjct: 225 LPAIRPALERLKVGAVSEPIQGANG-FHLVKLTERRDARLATLDEVRGRLRESLRAQRQE 283

Query: 497 EEVSSKANQLV 507
           +   +  + LV
Sbjct: 284 QIAKAYLDGLV 294


>gi|300821942|ref|ZP_07102086.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
 gi|300905457|ref|ZP_07123223.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
 gi|300923997|ref|ZP_07139998.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
 gi|301305055|ref|ZP_07211156.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
 gi|301330176|ref|ZP_07222838.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
 gi|331666290|ref|ZP_08367171.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA271]
 gi|331680626|ref|ZP_08381285.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli H591]
 gi|300402673|gb|EFJ86211.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
 gi|300419766|gb|EFK03077.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
 gi|300525542|gb|EFK46611.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
 gi|300839662|gb|EFK67422.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
 gi|300843816|gb|EFK71576.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
 gi|315255671|gb|EFU35639.1| PPIC-type PPIASE domain protein [Escherichia coli MS 85-1]
 gi|331066501|gb|EGI38378.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA271]
 gi|331072089|gb|EGI43425.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli H591]
          Length = 428

 Score = 80.8 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATADIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRL 360


>gi|269960923|ref|ZP_06175293.1| survival protein SurA [Vibrio harveyi 1DA3]
 gi|269834363|gb|EEZ88452.1| survival protein SurA [Vibrio harveyi 1DA3]
          Length = 427

 Score = 80.8 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 129/404 (31%), Gaps = 90/404 (22%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            KI+  +LF   L  G++ A   +      V V    +  S    + K       Q  G 
Sbjct: 1   MKIWKSLLFTTLLSCGVTAAPVEL--DKVAVIVNDGVILQSDINTAMKTLQANARQS-GK 57

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            + S       L  ++++ L+      Q  E IG+  D  R+   IA       ++N  S
Sbjct: 58  SLPSASV----LKDQVVEKLIIDTLQGQEAERIGVRIDDNRLNQAIAEI----ARNNNQS 109

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            +   + +  EG++  E+         R  +                   R     R ++
Sbjct: 110 VEQLAASVQAEGLSYPEF---------REQIRKEIAAS----------EARNALVRRRIN 150

Query: 194 YIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
            +      +    A  +NA +                 +I +I     + + K E+    
Sbjct: 151 ILPAEVDSLADQLATETNATVQ---------------YKIGHIQLRFSDDKDKSEV---- 191

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSD 309
                                      + EA+   + LK G  F ++A    K   +L  
Sbjct: 192 ---------------------------EAEANALVKKLKDGADFSEMAYTYSKGPKALQG 224

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
              G   KE +P    AD I  +  KG          G+ I  V ++K   TV+  EV  
Sbjct: 225 GDWGWMRKEEMP-TIFADQI-KMQNKGSIIGPFRSGIGFHILKVEDVKGLETVAVTEVNA 282

Query: 370 D---IANQ--MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
               I     +    A +++ E  +R++   A   +  +++ + 
Sbjct: 283 RHILIKPTVILSDEGAQKELNEFIRRIK---AGEATFAQLATQY 323


>gi|323975779|gb|EGB70875.1| ppic-type ppiase domain-containing protein [Escherichia coli
           TW10509]
          Length = 428

 Score = 80.8 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSVPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 98/306 (32%), Gaps = 27/306 (8%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           +   +++   +  G +    +   K  S D    +  G           P     L R+ 
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL- 360

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                      +++P  S     + E +  R  D+          +     K +EE +S 
Sbjct: 361 -------NKGQMSVPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASW 413

Query: 503 ANQLVL 508
             +   
Sbjct: 414 MQEQRA 419


>gi|167579883|ref|ZP_02372757.1| survival protein SurA, putative [Burkholderia thailandensis TXDOH]
          Length = 448

 Score = 80.8 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 39  DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D+  V   + R      + N    D + +R+  +G+    ++      L
Sbjct: 94  VQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDLFVRDARTEL 149

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211
             + +    V   +  S+  +               ++  +++I +         D   A
Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGAQQDLRLEHIFVKAPTNAPQTDIDAA 209

Query: 212 VLTQWF-----------------------EKYKDN---YRAPEYKRISYILFDVHEKEKK 245
                                        +  K     ++AP       +      +  +
Sbjct: 210 QKKAEGLLQQALASGTNFERLAKSQSEADDAKKGGDLGFKAPSSLPSDVVDAVSKLRPGE 269

Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286
           +  +   +   +E          +N           V  ++       ++ +A +     
Sbjct: 270 VNPTLIRVPDGFEIVRLVDRRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L ++G  +  + 
Sbjct: 330 RRQIEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNAL-QEGQVSNPVR 387

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436


>gi|91790684|ref|YP_551636.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
 gi|122070654|sp|Q121Q4|SURA_POLSJ RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|91699909|gb|ABE46738.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
          Length = 473

 Score = 80.8 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 66/473 (13%), Positives = 134/473 (28%), Gaps = 92/473 (19%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +  S       +    I Q+ G  +   R     L  ++L+ L+S     Q 
Sbjct: 71  VAVVNSEPITNSEVRTKLVRTEQQIIQQ-GSPLPPRR----ELVPQVLERLISDKAQLQL 125

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
               G+  D   V   +        + N+ S D    RL  +GI   ++       L  +
Sbjct: 126 ARSAGMRVDDNAVEAAVQTV----ARQNQISVDELRRRLKADGIAYSQFESDLRDELLVS 181

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            +                         R VD               +   +        D
Sbjct: 182 RLR-----------------------QREVDL----------RVTVTEQDI--------D 200

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
            +   +          ++  +  + +  +              +P        V   Q +
Sbjct: 201 QFLREQEGGTELSSLALNLAQILVAVPEN-------------ATPGQ------VAALQAK 241

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTP 340
           A +     + G  F  LA E   S +  + G     +         +S  SL K G    
Sbjct: 242 AQQVMDKARGGADFAALANEFSDSPTRGTGGLMGLREADRYPPLFVESTKSL-KVGGLAG 300

Query: 341 VIHGSFGYVIAHVSNIK----PSFTVSFQEVKK---DIANQMRITKASEKVKEDYKRLEE 393
            I    G+ I  V   +    P   ++    +     ++ +   T A+EK+    KR+  
Sbjct: 301 PIRSGAGFHILKVIEKRQAGMPGSVITQTHARHILLRLSPKQGETAATEKLAALRKRI-- 358

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
            LA       ++R       +       G          +P  E+++  +       ++ 
Sbjct: 359 -LAGQADFAALARENS----EDASAKQGGDLGWANPGMFVPEFEKVMNGL-----APNQI 408

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
               +       +Q+ E   A+  + ++     +   +  K  E     A ++
Sbjct: 409 SDPLVSRFGVHLIQVLERREAQMSQRDQ-REMARNVLRGKKQEEAYVLWAQEV 460


>gi|312880257|ref|ZP_07740057.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
 gi|310783548|gb|EFQ23946.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
          Length = 344

 Score = 80.8 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 64/426 (15%), Positives = 129/426 (30%), Gaps = 94/426 (22%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS---GSSTVVSVGRQKVPFSSFIN 58
           ++ +R   R  +  +  + +   F  +G+               V   G +K+  SS   
Sbjct: 3   MKYLRTNVRWIMITVVALFVVSCFAGYGMYSRGQGQGGGMRDYAVAEAGGKKIMRSSLEK 62

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
             ++       +    + S  A    L K +LDN+V    L + +E+  +      V   
Sbjct: 63  GMQEMAEQFGNQ---QITS--ADLPLLRKAVLDNIVVSEQLLREVENQKITVGDDEVATA 117

Query: 119 IARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           + R        ++F + + ++  L R  ++EK+      + +++  ++     G      
Sbjct: 118 LKRI------QDQFPTKEAYMQYLQRSNLSEKDVKARLREQIAQQKLMEKVSAG------ 165

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD-NYRAPEYKRISYIL 236
                                       A        + ++  KD  +R P    ++ + 
Sbjct: 166 ----------------------------ASVDIVDARKLYDAMKDMMFRRPMGYTVNVVT 197

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
           F      K                                        EA Q L  G+K+
Sbjct: 198 FRSESVAK----------------------------------------EARQKLLAGEKW 217

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADS--IFSLAKKGDFTP-VIHGSFGYVIAHV 353
             + +     + + +       +IPD  LA    +      G  TP V   S   ++A  
Sbjct: 218 DDVLKACSGDIGNSTP-YSKPVFIPDRELASDLQVIRTLGIGKLTPLVRITSDDILLAVK 276

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
              +    + F EV  DI   +   K  E     ++ L++   +     ++   EK  S 
Sbjct: 277 RTKEAERVLPFAEVSGDIEQTLLAQKKRELQGAYFEELKKKAGVKVLDPKLFEVEKPASA 336

Query: 414 DLPLVD 419
           D   V 
Sbjct: 337 DAKPVS 342


>gi|224437416|ref|ZP_03658385.1| hypothetical protein HcinC1_05580 [Helicobacter cinaedi CCUG 18818]
          Length = 281

 Score = 80.8 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 63/159 (39%), Gaps = 13/159 (8%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQLAE 301
            +++ +++  Y+ N+  + + E      ++   + EA +  + L K       KFI+LA 
Sbjct: 118 SVNDAQIKEIYKNNEGMFINQE-MHARHILVKTESEAKDIIKELDKAGKKAESKFIELAN 176

Query: 302 EQGKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
            +          +   LG+F +  +     A++  +L         +   FGY + ++  
Sbjct: 177 AKSTDPASKQAKNGGDLGTFQRN-VMHPDFANAASNLKPGTYTQEPVQTPFGYHVIYLIK 235

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
                 + + E KK I  Q+++      + +  + L E 
Sbjct: 236 KSEPKIIPYNEAKKIIEEQIKMQNVQGGMMQKIQALREK 274


>gi|309803457|ref|ZP_07697551.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 11V1-d]
 gi|308164466|gb|EFO66719.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 11V1-d]
          Length = 238

 Score = 80.8 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 15/170 (8%)

Query: 221 KDNYRAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + N   PE  +  I   L      +    I+  + +  +++ + K        V+ ++  
Sbjct: 40  QQNGMTPEAYKESIQTNLLLQAALKDIKPITKAQEKKAWKEYQPK------VRVQHILVE 93

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY-----IPDVSLADSIFSLA 333
            +  A +  + L KG  F  LA++              + +       D    ++ F L 
Sbjct: 94  KEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGKIEPFDSSDTTLDADFKEAAFKLK 153

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
                   +   FGY I  +  IK     SFQ  K +I  ++    A ++
Sbjct: 154 TGEYTKKPVKTQFGYHIIKM--IKHPSKGSFQSHKSEIIARIYQKMAQDQ 201



 Score = 40.4 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 13/158 (8%)

Query: 483 LTDVKKDWKTVKTAEEV------SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ--- 533
               KK WK  +    V           + V+E   +G +F+D+ K       T+     
Sbjct: 71  KAQEKKAWKEYQPKVRVQHILVEKEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGK 130

Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQE-KDKFI 591
           I   D+ +     D     F          P++    Y + K + +   G  Q  K + I
Sbjct: 131 IEPFDSSDTTLDADFKEAAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGSFQSHKSEII 190

Query: 592 SYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627
           + + Q M +D  ++ SV+  +  + +V + DN ++  L
Sbjct: 191 ARIYQKMAQDQNVIKSVLGVVLKRANVNIKDNDLKNVL 228


>gi|294672824|ref|YP_003573440.1| peptidylprolyl isomerase domain-containing protein [Prevotella
           ruminicola 23]
 gi|294472529|gb|ADE81918.1| peptidylprolyl isomerase domain protein [Prevotella ruminicola 23]
          Length = 477

 Score = 80.8 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/405 (13%), Positives = 120/405 (29%), Gaps = 51/405 (12%)

Query: 240 HEKEKKIEISNDEL----QAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------ 283
            ++ +   +++ E+    +  YE+ +    S  +     ++     +A            
Sbjct: 96  DQQVRPTMVTDAEVLDQARQMYERTQAMIGSKGLVRPAHILLKLSTQATVQQQEKIHQRI 155

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTP 340
           D  +++L+ G  F +LA++  +       G       P        D  +SLA  G  + 
Sbjct: 156 DSVYRALQAGADFAELAKKVSEDTGSAVRGGELPWIAPSQTLKEFEDVAYSLA-PGQLSQ 214

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
                 GY I  +   K      F  +K+ I   +       ++ +   +L   +A    
Sbjct: 215 PFLSPVGYHIILMKERK--QLEPFDSLKQSIVASLERHGIRNEIADM--KLRNRVAAS-- 268

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
               + + K   +     D         +     Y + LL       +  SK     +  
Sbjct: 269 ----AGKLKPNDVMQQKADSVAAANSELKYLFKEYHDGLLLYEISNREVWSKAQNDEIAL 324

Query: 461 GSYMWVQIKESI--PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
            ++     K+      R R        +    KT +  + V      L          F 
Sbjct: 325 KAWFDTHKKKYTWKEPRYR-------GIAYHVKTKQDVKAVKQCVKNL---------PFD 368

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
              + L  +    + I R+  E   F       +        +     +  +Y +  V  
Sbjct: 369 QWAEALRTTFNPDSVI-RIRVEKGLFKLGDNPTIDKM--VFKQATSSTSDANYPIDAVYG 425

Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
            K+            + + +   L    +  L+ +Y V V+  ++
Sbjct: 426 KKLKRPDNYQDVRQQVVEDLQDYLEQEWVEALRHRYQVEVNQEVL 470


>gi|157374105|ref|YP_001472705.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
 gi|157316479|gb|ABV35577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
          Length = 434

 Score = 80.8 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/332 (9%), Positives = 99/332 (29%), Gaps = 55/332 (16%)

Query: 82  SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
              L  ++++ L+      Q  + IGL     ++   I+              D   +++
Sbjct: 65  DQALRTQVIERLIMTRLQMQMADRIGLHIGDLQLDQTISNIAKEQNLT----VDQMRAKI 120

Query: 142 AREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNN 199
             EG++  +Y +   + ++  ++        ++ S   ++   +   E         + +
Sbjct: 121 GEEGMSWSQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKLIEEQGLQQVEFQIGH 180

Query: 200 RHVPAIADPSNAVLTQWFE---------KYKDNYRAP-----------EYKRISYILFDV 239
             +   + PS+  L +  E         +  D++R             E     Y+  + 
Sbjct: 181 ILIEVPSSPSSEALQKASERANTVLKRIQDGDDFRRTAIAASAGPKALEGGVWDYMNVNE 240

Query: 240 HEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQLVFP-----N 279
                   +S  +               +    +    +    +  +   ++       +
Sbjct: 241 MPTLFAEVLSGAKTGDVIGPIRSGAGFHIIKVLDARGLQTKEVDEVSSRHILIKPSPILS 300

Query: 280 QKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFS 331
           ++ A                 F  LA +  +     + G    ++   +   + A ++ +
Sbjct: 301 EERAKAMLDKFVEQVRAGDADFAALARQYSEDPGSGAKGGELGWADPSVYVPAFAQTLNA 360

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           L + G+ +     S G+ I  +   + +    
Sbjct: 361 L-EIGEISEPFRSSHGWHIVQLEERRKTDATD 391



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 79/237 (33%), Gaps = 18/237 (7%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ- 280
             YR    + I+       + +++I++S  E+    +  +E+        +  ++     
Sbjct: 128 SQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKLIEEQGLQQVEFQIGHILIEVPS 187

Query: 281 -----------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328
                      + A+   + ++ G  F + A         +  G +    + +  +L   
Sbjct: 188 SPSSEALQKASERANTVLKRIQDGDDFRRTAIAASAGPKALEGGVWDYMNVNEMPTLFAE 247

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKED 387
           + S AK GD    I    G+ I  V + +   T    EV    I  +     + E+ K  
Sbjct: 248 VLSGAKTGDVIGPIRSGAGFHIIKVLDARGLQTKEVDEVSSRHILIKPSPILSEERAKAM 307

Query: 388 YKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
             + +E+  A       ++R+    S D       G+         +P   Q L  +
Sbjct: 308 LDKFVEQVRAGDADFAALARQY---SEDPGSGAKGGELGWADPSVYVPAFAQTLNAL 361


>gi|261403916|ref|YP_003240157.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
 gi|261280379|gb|ACX62350.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
          Length = 361

 Score = 80.8 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 109/311 (35%), Gaps = 31/311 (9%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I EKE+      +   +     F+        L  Q   + +      Y   +++   A 
Sbjct: 52  ITEKEFDLEQRMIQFMSPEYAQFLQMDEFKEYLAKQGVAYEYL-----YAKADDKAKEAA 106

Query: 206 ADPSNAVLTQW--------FEKYKDNYRAPEYKRISYILFDVHEKE-KKIEISNDELQAE 256
              ++ +L Q         F+   ++ +  E    +Y+L  +   E +K +++ ++++ E
Sbjct: 107 EKQTDDLLKQQKAGMGEEQFKAALESQKLTEDDLKNYMLRVMTVMEHEKNQVTEEDIKKE 166

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQ----------KEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++ NK+ Y +  +R V       +          K A E    L KG+ F  LA+E  + 
Sbjct: 167 FDANKKDYTNISVRHVLIAFQDAEGKERPEGEALKIAKEVQSKLNKGEDFAALAKEYSQD 226

Query: 307 LSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G   +            +   +L +    +  +   +GY +  V   +      
Sbjct: 227 PGSKNSGGLYENKPAGSWVPQFKEKALTL-ELNKISDPVETDYGYHVMKVEKREEVTYDK 285

Query: 364 F-QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
              + K+ I +++   K    ++ +   L E + L  S  E + +    + D        
Sbjct: 286 LPADQKEGIRSELASAKIDNFMQNELNNLIESMNLPKS--ENADKPAEGTGDQKTDGTTD 343

Query: 423 KDVKGKEVAAI 433
           K  +G +    
Sbjct: 344 KPAEGDQTPDA 354


>gi|146329550|ref|YP_001209813.1| PpiC-type peptidylprolyl cis-trans isomerase [Dichelobacter nodosus
           VCS1703A]
 gi|146233020|gb|ABQ13998.1| PpiC-type peptidylprolyl cis-trans isomerase [Dichelobacter nodosus
           VCS1703A]
          Length = 421

 Score = 80.8 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/380 (9%), Positives = 105/380 (27%), Gaps = 66/380 (17%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V  + +         +Q+     +                ++++ + ++    + Q  + 
Sbjct: 38  VNEEAISRKRLNELLEQQRARAPR-----------DQPYSEEQLQEQIIMQILMAQMAKS 86

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
             L      +   IA     H         ++       G+++ EY     +++ + ++ 
Sbjct: 87  AHLTVKDAEIDHAIATVAAQHKIS---VAQLYQQIARTMGLSQTEYRQQIAQLMLQDELK 143

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY----- 220
              +G     N+   Q      +         + + +             + ++      
Sbjct: 144 QRLIGRDI--NISEQQINNQITQIIRQRGTKFHLQDLLLPLPKKELPEQAYRQQMQTISQ 201

Query: 221 -----------------KDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254
                            K  +         + P     +    +  E   +     D L 
Sbjct: 202 ALKTTGNDLAKTAQLLPKAQFNDLGAVNLGQIPAKFAQAVATLNSGELVAEPVADADGLH 261

Query: 255 AEYEKNKE----KYFSPEIRTVEQLVFP--------NQKEADEAFQSLKKGKKFIQLAEE 302
                +K     +++  E   +  ++          ++ + ++ +Q L+ G  F QLA  
Sbjct: 262 FLKVVSKTAANGQHYEVEQGKLRHILIRRDPNNPQFSRLQIEQLYQQLQSGADFAQLAAR 321

Query: 303 QGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
             +      +   LG  S + + D     ++         +     + G+ I  V   + 
Sbjct: 322 YSQDPRSAVNGGDLGWMSTDQL-DPRFV-AVMHRIPFNTISEPFESALGWHIIEVFARQ- 378

Query: 359 SFTVSFQEVKKDIANQMRIT 378
           +   S + ++  I   +   
Sbjct: 379 TVDRSEERIRDHIRRTLYEE 398


>gi|325282949|ref|YP_004255490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           proteolyticus MRP]
 gi|324314758|gb|ADY25873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           proteolyticus MRP]
          Length = 652

 Score = 80.8 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/365 (10%), Positives = 98/365 (26%), Gaps = 96/365 (26%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
                +  + V  + +                + + G  +  +          ++  +V 
Sbjct: 40  RGEQGTPAIRVNGKAITAEKLQKIQDNNPSPFASQ-GKALQDD------FRTFMISQVVR 92

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              + Q   D  +      V  E+ +      ++N      +   L R G+++ EY +  
Sbjct: 93  QELMVQAARD--INVTREDVNAEVTKV---REQNNLTDDAAWTDALQRVGLSDSEYREQV 147

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            + L+                                           A+   +   +  
Sbjct: 148 KEGLAVQRKNEAIE---------------------------------AAVPAATEQEMKT 174

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +++     ++                                          +     Q+
Sbjct: 175 YYDLNPTLFQT----------------------------------------EQRLRGRQI 194

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF----------SKEYIPDVSL 325
           V  ++K+A E     + G  F +LA++     ++                 +  +    +
Sbjct: 195 VVDDEKKARELLAQARGGADFAELAKKNSTENAENGGALGALGEGGALQPVEPVVLPEEV 254

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
           A ++ +L   G  T V+     + +  V  + P  T  F+ VK+++  ++  +K    V+
Sbjct: 255 AAAVQALPAPG-LTDVVASGGRFYVVKVEELLPPETKPFETVKEEVKTELEKSKKRAAVE 313

Query: 386 EDYKR 390
                
Sbjct: 314 AFMDE 318



 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 87/195 (44%), Gaps = 9/195 (4%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           + +++++++LQA Y++ ++++ +P    V +  FP++++A    Q  + G  F Q A   
Sbjct: 424 RNVKVTDEDLQAAYQERQQQFQTPASAVVSEATFPSREQALAFRQDWQGG-DFTQAATAA 482

Query: 304 GKSLSDISLGSFSKE-YIPDVSLADSIFS--LAKKGDFT--PVIHGSFGYVIAHVSNIKP 358
           G  +S    G  + +  + + S+  SIF   L   G  +   ++  S G+ +  V++++ 
Sbjct: 483 GGIVS--ERGQVAPDTDLMEPSVLQSIFEGELRAVGSTSLTNIVQASDGWKVVAVTDLQQ 540

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE-ISRREKIVSIDLPL 417
              +   EV+  +   +   K + + ++        L     ++E ++ ++  V  D P 
Sbjct: 541 GRVLPLDEVRTSLKASLFNEKQAAEGEKFLSSKVAALKPVNKLEEVLAAQKARVGADAPA 600

Query: 418 VDFAGKDVKGKEVAA 432
                +   G   + 
Sbjct: 601 DASGAQTASGAAASG 615


>gi|169796158|ref|YP_001713951.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AYE]
 gi|260555208|ref|ZP_05827429.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC
           19606]
 gi|169149085|emb|CAM86962.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AYE]
 gi|260411750|gb|EEX05047.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC
           19606]
          Length = 441

 Score = 80.8 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 51/405 (12%), Positives = 121/405 (29%), Gaps = 69/405 (17%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           F+      V  V    +  S       +    +  +       E      L  ++LD L+
Sbjct: 31  FAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 85

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153
                 + ++  G++ D   +   + +      +    S + F  +L    I    Y + 
Sbjct: 86  LRQAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--IAPGTYENL 140

Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204
                + L+   +     +  ++ S+  +D      Q +        V ++ ++  +   
Sbjct: 141 RSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQE 200

Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242
           + + +  V +Q  +    N                  +R     P             + 
Sbjct: 201 VQNVAKEVRSQLAQSNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQT 260

Query: 243 EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
              I + +    L+    K  E+           ++            ++  D  ++ LK
Sbjct: 261 TDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLK 320

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA     + G +    SLG  +   +        +  +   G+ +      FG
Sbjct: 321 AGEDFATLAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFG 378

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + I  V++ +           KD+ ++ +   A + + E     E
Sbjct: 379 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 413



 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 39/285 (13%)

Query: 144 EGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
           +G+ E   E      ++  +  +    +  +      L+Q K++       D   LN   
Sbjct: 54  QGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILRQAQLEQVKKYGI---KPDEKSLNEAV 110

Query: 202 VPAIADPSNAVLTQWFEK-------YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
           +   +   +  L  + +K         +N R+   + ++       +   +I+IS+ ++ 
Sbjct: 111 LKVASQSGSKSLEAFQQKLDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVD 170

Query: 255 AEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
              +  + +        V  +          Q  A E    L +      L ++   +  
Sbjct: 171 NFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQSNDLNAL-KKLSTATV 229

Query: 309 DISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN------------ 355
            +         + D+    +   +  + G  T +I    G  +  +              
Sbjct: 230 KVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQ 289

Query: 356 -------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                  I+PS  VS +  K+ I +  +  KA E           
Sbjct: 290 YQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 334


>gi|268602234|ref|ZP_06136401.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
 gi|268586365|gb|EEZ51041.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
          Length = 357

 Score = 80.8 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/367 (11%), Positives = 103/367 (28%), Gaps = 94/367 (25%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                     + +       +  +    + +         +     L +++L  LV+ + 
Sbjct: 80  SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 132

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  +   ++A    +   +A++P                      ++  +  +    +
Sbjct: 133 IVQAGKRRNIQASEAEIDAVVAQNPALKN------------------LSPTQRRELADNI 174

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           ++        +   R S   +D                L       I  P  A L Q+  
Sbjct: 175 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 220

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           ++               +    + +     +   ++  Y++                   
Sbjct: 221 QH---------------ILIKADSKNAAVGAESTIRKIYDQ------------------- 246

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
                       + G  F  LA    +  S      LG F+   +   +  +++ +L K 
Sbjct: 247 -----------ARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 293

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G     +   FG+ I  ++ ++ + T      ++ I N +R     +K  +    L   L
Sbjct: 294 GQVGAPVRTQFGWHIIKLNEVRDAGTP-----EERIRNSVRQYIFQQKAGQATVNLLRDL 348

Query: 396 ALGTSMD 402
             G  +D
Sbjct: 349 HSGAYVD 355


>gi|254517142|ref|ZP_05129200.1| probable peptidyl-prolyl cis-trans isomerase transmembrane protein
           [gamma proteobacterium NOR5-3]
 gi|219674647|gb|EED31015.1| probable peptidyl-prolyl cis-trans isomerase transmembrane protein
           [gamma proteobacterium NOR5-3]
          Length = 296

 Score = 80.4 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 20/170 (11%)

Query: 255 AEYEKNKEKYF-SPEIRTVEQLVF---------PNQKEADEAFQSLKKGK-KFIQLAEEQ 303
             Y    EKY   PE R    ++F         P +++A      L+ G   F +  E  
Sbjct: 121 ERYTLQPEKYGLVPEERKGSHILFRSPPGLDREPLREKATNVLAELRSGAVTFTEAVELY 180

Query: 304 GKSLSDISLGSFSKEYI------PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +       G     +I           ++++F++ + G ++ V    FG  I  +  IK
Sbjct: 181 SEDPGTAKKGGLLDRWITYGDPSISPPFSEALFAVDQPGLYSEVTDTQFGLHIIRLEAIK 240

Query: 358 PSFTVSFQEVKKDIANQMRIT---KASEKVKEDYKRLEEFLALGTSMDEI 404
           PS    F EVK  +  ++       A +++   +   E+      ++D +
Sbjct: 241 PSRIQEFDEVKSKVLTEIVKEYRTLAQQEINSRFLISEDAEIDVEALDRL 290


>gi|226355582|ref|YP_002785322.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus deserti
           VCD115]
 gi|226317572|gb|ACO45568.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor
           [Deinococcus deserti VCD115]
          Length = 626

 Score = 80.4 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 63/423 (14%), Positives = 134/423 (31%), Gaps = 51/423 (12%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
             YRA   ++++        ++     +  E +  Y+ N EK+ S       Q+V   + 
Sbjct: 137 ATYRAQLREQLAVNRKVEELRKAVPAATEAEAKLYYDLNPEKFQSEARIIGRQIVVAKEA 196

Query: 282 EADEAFQSLKKGKKFIQLAE-------EQGKSLSDISLG---SFSKEYIPDVSLADSIFS 331
           +A E    ++ G  F  +A+       ++G +L  +  G     ++  +P   +  + F+
Sbjct: 197 KAKELLAQVRGGADFAAVAKANSTEFADRGGALGPVENGKPRPVAQVALP-AEVGAAAFA 255

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           L K G  T V+     + I  V       T  F E K D    +   K +  ++E  + L
Sbjct: 256 LTKGG-ITDVVASGDKFYIVKVEQYLAPATKPFAEAKADAITAVTEQKKNAALEEWVEGL 314

Query: 392 E-EFLALGTSMDEISRREKIVSIDLPLVDFA-------GKDVKGKEVAAIP--------- 434
           E +        +  +    + ++    V  +       G +  G+ +  +P         
Sbjct: 315 EKDVKIEVKDPNWRTENPVVATVGGQNVRHSDVISQVVGNEQFGQLLQQVPGDQAAQLVN 374

Query: 435 --YKEQLLFRVFGKDDPLSKDHTVALPDGS--------YMWV--QIKESIPARDRKL-EE 481
              K Q+  ++           ++ LP                 +  +   A  +    +
Sbjct: 375 GMLKPQVTQQLISSYAAPQIARSLKLPVTGTRQEMAAAIAAYGSRNVKVTDADVQAFYTQ 434

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK-NFRDIGKNLGASLLTTNQINRMDNE 540
                +              ++  L    +  G+ +F       G ++     +      
Sbjct: 435 NKAQFQSPATATVDEASFKDRSKALAFRNTWNGQGSFATAASKQGGTVSERGSVT---AG 491

Query: 541 NKFFGYDGISQVFSG-----PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
           +   G +  + VFS        E      ++ G  Y V  VT+ K    Q      S + 
Sbjct: 492 DGKLGQELNAAVFSARTLKSAGEGSLSDVVKVGERYSVAYVTDLKPATTQPLSAVRSQIE 551

Query: 596 QMM 598
             +
Sbjct: 552 SQV 554



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 83/203 (40%), Gaps = 8/203 (3%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                + +++++ ++QA Y +NK ++ SP   TV++  F ++ +A     +      F  
Sbjct: 414 AAYGSRNVKVTDADVQAFYTQNKAQFQSPATATVDEASFKDRSKALAFRNTWNGQGSFAT 473

Query: 299 LAEEQGKSLSDISLGSFSKEYI-PDVSLADSIFSL-----AKKGDFTPVIHGSFGYVIAH 352
            A +QG ++S    GS +         L  ++FS      A +G  + V+     Y +A+
Sbjct: 474 AASKQGGTVS--ERGSVTAGDGKLGQELNAAVFSARTLKSAGEGSLSDVVKVGERYSVAY 531

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V+++KP+ T     V+  I +Q+  TK +E  +    +    L     + E+   ++   
Sbjct: 532 VTDLKPATTQPLSAVRSQIESQVLATKRNEAGQAFLAKQVAALNPTDKLKEVLAAQEKRV 591

Query: 413 IDLPLVDFAGKDVKGKEVAAIPY 435
                      D       A P 
Sbjct: 592 AAAAPKAAPKTDSSKPSTGATPE 614



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/574 (10%), Positives = 150/574 (26%), Gaps = 96/574 (16%)

Query: 30  LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
           L     S +  +  + V  + V          +    +       +  +  ++  + +K+
Sbjct: 30  LGSLFSSPNKGTPALVVNGKTVTAEELDGV--RRSNPVLSSTDTGILGDDFKTFTVAQKV 87

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
              LV+ A  D       ++     V  E+ +       ++      +   L   G+ + 
Sbjct: 88  RQVLVAQAASD-------IKVSRDDVNAEVKKI---REANSLTDSKAWTDALQGVGLTDA 137

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA------KRFYFENRSVDYIVLNNRHVP 203
            Y     + L+    V      +  +     +       ++F  E R +   ++  +   
Sbjct: 138 TYRAQLREQLAVNRKVEELRKAVPAATEAEAKLYYDLNPEKFQSEARIIGRQIVVAKEAK 197

Query: 204 AIADPSN----AVLTQWFEKYKDNY----------RAPEYKRISYILFDVHEKEKKIEIS 249
           A    +     A      +     +             + + ++ +            ++
Sbjct: 198 AKELLAQVRGGADFAAVAKANSTEFADRGGALGPVENGKPRPVAQVALPAEVGAAAFALT 257

Query: 250 NDEL-------QAEYEKNKEKYFSPEIRTVEQ-----LVFPNQKEADEAFQSLKKGKKFI 297
              +          Y    E+Y +P  +   +     +    +++ + A +   +G    
Sbjct: 258 KGGITDVVASGDKFYIVKVEQYLAPATKPFAEAKADAITAVTEQKKNAALEEWVEG--LE 315

Query: 298 QLAEEQGKSLSDISLGSFSK--------------------------EYIPDVSLADSIFS 331
           +  + + K  +  +                                + +P    A  +  
Sbjct: 316 KDVKIEVKDPNWRTENPVVATVGGQNVRHSDVISQVVGNEQFGQLLQQVPGDQAAQLVNG 375

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN----QMRITKASEKVKED 387
           + K      +I       IA   ++K   T + QE+   IA      +++T A  +    
Sbjct: 376 MLKPQVTQQLISSYAAPQIAR--SLKLPVTGTRQEMAAAIAAYGSRNVKVTDADVQAFYT 433

Query: 388 YKRLEEFLALGTSMDEISRR------------------EKIVSIDLPLVDFAGKDVKGKE 429
             + +       ++DE S +                      S     V   G    G  
Sbjct: 434 QNKAQFQSPATATVDEASFKDRSKALAFRNTWNGQGSFATAASKQGGTVSERGSVTAGDG 493

Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
                    +      K         V      Y    + +  PA  + L  V + ++  
Sbjct: 494 KLGQELNAAVFSARTLKSAGEGSLSDVVKVGERYSVAYVTDLKPATTQPLSAVRSQIESQ 553

Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
               K  E   +   + V   +   K    +   
Sbjct: 554 VLATKRNEAGQAFLAKQVAALNPTDKLKEVLAAQ 587


>gi|27065591|pdb|1M5Y|A Chain A, Crystallographic Structure Of Sura, A Molecular Chaperone
           That Facilitates Outer Membrane Porin Folding
 gi|27065592|pdb|1M5Y|B Chain B, Crystallographic Structure Of Sura, A Molecular Chaperone
           That Facilitates Outer Membrane Porin Folding
 gi|27065593|pdb|1M5Y|C Chain C, Crystallographic Structure Of Sura, A Molecular Chaperone
           That Facilitates Outer Membrane Porin Folding
 gi|27065594|pdb|1M5Y|D Chain D, Crystallographic Structure Of Sura, A Molecular Chaperone
           That Facilitates Outer Membrane Porin Folding
          Length = 408

 Score = 80.4 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 25  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 76

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 77  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 132

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 133 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 191

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 192 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 251

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 252 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 311

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 312 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 369

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 370 DAAQKDRAYRMLMNRKFSEEAASWMQE 396



 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 104 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 163

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 164 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 223

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 224 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 283

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 284 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 340


>gi|294625755|ref|ZP_06704374.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664833|ref|ZP_06730154.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292599925|gb|EFF44043.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605389|gb|EFF48719.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 463

 Score = 80.4 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/406 (10%), Positives = 105/406 (25%), Gaps = 68/406 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S    + +      + +   +   +      L +++L+ LV     
Sbjct: 32  DRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLPPDDV-----LQRQVLERLVLVKLQ 86

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +  G+      +   IA       + N  + D    +LA +G+   ++       +
Sbjct: 87  VSRADGNGIRVSDEELNRAIASI----AQQNGTTVDGLRQKLAADGMGYADFRASVRDEI 142

Query: 160 SRTDVVGMFVGG-MRPSNLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAV-- 212
               +   F    +  S   +D    Q      +      ++       A    +     
Sbjct: 143 IVQRLRQSFAQSRISVSEGEVDTALAQQAATGSQYHLAHILIGLPEGANAEQIATGQKKV 202

Query: 213 --LTQWFEKYKDNYRAPEYK-----------RISYILFDVHEKEKKIEISN--------- 250
             +    +K + ++ A   +            + +   D         I +         
Sbjct: 203 DGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSLDEIPNAFAQLIRDMQPGQVAGP 262

Query: 251 ------------DELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQS 289
                        E++      ++K  +        ++            + + D     
Sbjct: 263 LRGPSGFQLLKLVEMRDANAGGEKKMVT--EYHARHILVRIGDNQTEAQAKAKIDTIRAR 320

Query: 290 LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           +  G  F   A+E  +  +       LG F  +          + SL   G  +      
Sbjct: 321 IVGGADFQATAKESSEDTNSRGQGGDLGWFPADAF-GPDFGKQVESLT-DGAVSEPFRTQ 378

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            G+ I      + +   S +  +  +   +   K  E+     + L
Sbjct: 379 AGWHIVQRVGSRQTDV-SAENQRAQVRETIGRRKLEEEYNRYLQEL 423


>gi|21241635|ref|NP_641217.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|81804731|sp|Q8PP23|SURA_XANAC RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|21106996|gb|AAM35753.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 463

 Score = 80.4 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/406 (10%), Positives = 105/406 (25%), Gaps = 68/406 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S    + +      + +   +   +      L +++L+ LV     
Sbjct: 32  DRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLPPDDV-----LQRQVLERLVLVKLQ 86

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +  G+      +   IA       + N  + D    +LA +G+   ++       +
Sbjct: 87  VSRADGNGIRVSDEELNRAIASI----AQQNGTTVDGLRQKLAADGMGYADFRASVRDEI 142

Query: 160 SRTDVVGMFVGG-MRPSNLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAV-- 212
               +   F    +  S   +D    Q      +      ++       A    +     
Sbjct: 143 IVQRLRQSFAQSRISVSEGEVDTALAQQAATGSQYHLAHILIGLPEGANAEQIATGQKKV 202

Query: 213 --LTQWFEKYKDNYRAPEYK-----------RISYILFDVHEKEKKIEISN--------- 250
             +    +K + ++ A   +            + +   D         I +         
Sbjct: 203 DGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSLDEIPNAFAQLIRDMQPGQVAGP 262

Query: 251 ------------DELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQS 289
                        E++      ++K  +        ++            + + D     
Sbjct: 263 LRGPSGFQLLKLVEMRDANAGGEKKMVT--EYHARHILVRIGDNQTEAQAKAKIDTIRAR 320

Query: 290 LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           +  G  F   A+E  +  +       LG F  +          + SL   G  +      
Sbjct: 321 IVGGADFQATAKESSEDTNSRGQGGDLGWFPADAF-GPDFGKQVESLT-DGAVSEPFRTQ 378

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            G+ I      + +   S +  +  +   +   K  E+     + L
Sbjct: 379 AGWHIVQRVGSRQTDV-SAENQRAQVRETIGRRKLEEEYNRYLQEL 423


>gi|82775458|ref|YP_401805.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella dysenteriae
           Sd197]
 gi|309787287|ref|ZP_07681899.1| chaperone surA [Shigella dysenteriae 1617]
 gi|121956480|sp|Q32K41|SURA_SHIDS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|81239606|gb|ABB60316.1| survival protein [Shigella dysenteriae Sd197]
 gi|308924865|gb|EFP70360.1| chaperone surA [Shigella dysenteriae 1617]
          Length = 428

 Score = 80.4 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + +   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLNQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATADIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRL 360


>gi|254494588|ref|ZP_05107759.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291]
 gi|268599899|ref|ZP_06134066.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11]
 gi|268604500|ref|ZP_06138667.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1]
 gi|268685120|ref|ZP_06151982.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268687382|ref|ZP_06154244.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|226513628|gb|EEH62973.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291]
 gi|268584030|gb|EEZ48706.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11]
 gi|268588631|gb|EEZ53307.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1]
 gi|268625404|gb|EEZ57804.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627666|gb|EEZ60066.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 357

 Score = 80.4 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/367 (11%), Positives = 103/367 (28%), Gaps = 94/367 (25%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                     + +       +  +    + +         +     L +++L  LV+ + 
Sbjct: 80  SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 132

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  +   ++A    +   +A++P                      ++  +  +    +
Sbjct: 133 IVQAGKRRNIQASEAEIDAVVAQNPALKN------------------LSPTQRRELADNI 174

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           ++        +   R S   +D                L       I  P  A L Q+  
Sbjct: 175 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 220

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           ++               +    + E     +   ++  Y++                   
Sbjct: 221 QH---------------ILIKADSENAAVGAESTIRKIYDQ------------------- 246

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
                       + G  F  LA    +  S      LG F+   +   +  +++ +L K 
Sbjct: 247 -----------ARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 293

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G     +   FG+ I  ++ ++ + T      ++ I N +R     +K  +    L   L
Sbjct: 294 GQVGAPVRTQFGWHIIKLNEVRDAGTP-----EERIRNSVRQYIFQQKAGQATVNLLRDL 348

Query: 396 ALGTSMD 402
             G  +D
Sbjct: 349 HSGAYVD 355


>gi|257460463|ref|ZP_05625564.1| foldase protein PrsA [Campylobacter gracilis RM3268]
 gi|257441794|gb|EEV16936.1| foldase protein PrsA [Campylobacter gracilis RM3268]
          Length = 269

 Score = 80.4 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 12/162 (7%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK---- 295
            ++  KI I + E+   Y KNK ++  P      Q+V   + EA++  + LK        
Sbjct: 101 AKEASKINIDDKEIADFYNKNKARFTEPARIKAAQIVVKTEAEANDIIKQLKGLSDSALF 160

Query: 296 --FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
             F +LA+ +            LG    + +     AD+I  +      T  I    GY 
Sbjct: 161 TKFAELAKAKSIDPQAKQTSGELGWMPSDQV--KPFADAISKIKDGQITTKAIRSRVGYH 218

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +      +    +S  E K  I   +R  KA++ V++    L
Sbjct: 219 VVLKEESQAKKQLSQSEAKPFIERVLRQQKAAKVVEQKAADL 260


>gi|15595896|ref|NP_249390.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas
           aeruginosa PAO1]
 gi|254239075|ref|ZP_04932398.1| hypothetical protein PACG_05257 [Pseudomonas aeruginosa C3719]
 gi|9946581|gb|AAG04088.1|AE004505_9 probable peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa PAO1]
 gi|126171006|gb|EAZ56517.1| hypothetical protein PACG_05257 [Pseudomonas aeruginosa C3719]
          Length = 314

 Score = 80.4 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299
           S+ ELQA Y+ NK +   P +  V Q+         +   +K A E ++    G  F +L
Sbjct: 140 SDAELQAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELYRQAADG-DFAEL 198

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A +          G      +    L  +        K G  +  I G+ G+ +  ++  
Sbjct: 199 ARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 258

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +   +  EV+  +   +R  +  +  K     L
Sbjct: 259 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293



 Score = 37.7 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 5/128 (3%)

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           A+  + E  KR +E        D      K    D P     G D+ G  + A       
Sbjct: 172 AAGGLAEARKRAQELYRQAADGDFAELARKHS--DDPQTARNGGDIGG--LLAQAQLLPA 227

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           +     +    +    +   +G +  V++ E   AR   L+EV   +++  +  +  +  
Sbjct: 228 IRPALERLKVGAVSEPIQGANG-FHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIA 286

Query: 500 SSKANQLV 507
            +  + LV
Sbjct: 287 KAYLDGLV 294


>gi|291529969|emb|CBK95554.1| PPIC-type PPIASE domain [Eubacterium siraeum 70/3]
          Length = 472

 Score = 80.4 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 112/350 (32%), Gaps = 63/350 (18%)

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLE-ADHGRVWGE--------------------- 118
            +    K I+D L +   + +  +++GL+      +                        
Sbjct: 95  YAQAYRKNIIDMLTNEKLILRKAKELGLDQLTEEEMAEVEKAYTKNLSDWYASFEKKAKT 154

Query: 119 ---IARSPLFHGKDNKFS-------HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
              I+       +D+           ++F   +A  G+ E  ++   T    +  V    
Sbjct: 155 ALGISTDDTSGTEDSANDEKILEKEKELFNEYIAGFGLTEDTFLMWQTNTAIQKKVNDYL 214

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
           +  +  S+  +D                              A   Q +EK   +Y    
Sbjct: 215 LKDITVSDSEVD--------------------DYITKLT---AEAKQAYEKSASSYATDS 251

Query: 229 YKRISYILFDV---HEKEKKIEISN-DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             +  +I  D          I  S+  E+ A   ++       + +  E+L    +K   
Sbjct: 252 EYKKVWIPKDARYIKYIAVGIASSDYAEINAARNESGADDAEIDKKRDEKLAEIKEKADA 311

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTP 340
              ++  +G  F  + +E   + S+ + G      + + +   +L D++F+L K GD + 
Sbjct: 312 ALKKATAEGADFDAVVKEYSSAYSESTKGEQILVLNSKGLISDALYDAVFALEKPGDISG 371

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +I    GY I    +          + +K +  ++  ++ SEK     + 
Sbjct: 372 LIPTDSGYYIVKYVSDAKVTDSDLSDYRKTVRQELLTSRQSEKTNAILEE 421



 Score = 37.3 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 56/143 (39%), Gaps = 12/143 (8%)

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR--MDNEN 541
            D + D K  +   E+  KA+  + + + EG +F  + K   ++   + +  +  + N  
Sbjct: 290 DDAEIDKKRDEKLAEIKEKADAALKKATAEGADFDAVVKEYSSAYSESTKGEQILVLNSK 349

Query: 542 KFFGYDGISQVFSG--PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-------KFIS 592
                     VF+   P ++    P ++G  Y+V  V+++KV      D       + ++
Sbjct: 350 GLISDALYDAVFALEKPGDISGLIPTDSGY-YIVKYVSDAKVTDSDLSDYRKTVRQELLT 408

Query: 593 YLTQMMNKDLLDSVIAYLKSQYS 615
                    +L+   + +  +Y 
Sbjct: 409 SRQSEKTNAILEEWRSAVNYEYD 431


>gi|218893343|ref|YP_002442212.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa LESB58]
 gi|218773571|emb|CAW29385.1| probable peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa LESB58]
          Length = 314

 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 13/155 (8%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299
           S+ ELQA Y+ NK +   P +  V Q+         +   +K A E ++    G  F +L
Sbjct: 140 SDAELQAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELYRQAADG-DFAEL 198

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A +          G      +  V L  +        K G  +  I G+ G+ +  ++  
Sbjct: 199 ARKHSDDPQTARNGGDIGGLLAQVQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 258

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +   +  EV+  +   +R  +  +  K     L
Sbjct: 259 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293


>gi|309379764|emb|CBX21540.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 327

 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 85/273 (31%), Gaps = 34/273 (12%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLL---DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
           ++++R  +              +   D+        + V+  ++           S A +
Sbjct: 60  EVITRRRLAQAVADAKANLPKDVQIGDEELTGQVLMQLVNQSLIVQAGKRRNIQASEAEI 119

Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266
                +     + + E +R     I           +   +S  E+    E+  K+    
Sbjct: 120 DAAAAQNPQLKHLSAEQRRELADSIIAEKVRQQAVMQNSRVSEAEVDRFIEQAQKQGITL 179

Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309
           PE         + ++     E             +   + G  F  LA +  +       
Sbjct: 180 PEGEPLRQYRAQHILIKADGENAAVGAESTIRKIYDQARNGTDFSGLARQYSQDAGAGNG 239

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG FS   +       ++ +L K G  +  +   FG+ I  ++ ++ + T      ++
Sbjct: 240 GDLGWFSDGVMV-APFEAAVHAL-KPGQVSAPVRTQFGWHIIKLNEVRDAGTP-----EE 292

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            I N +R     +K ++    L   L  G  +D
Sbjct: 293 RIRNSVRQYIFQQKAEQATAELLRDLHSGAYID 325


>gi|154149760|ref|YP_001403378.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Methanoregula boonei 6A8]
 gi|153998312|gb|ABS54735.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanoregula boonei
           6A8]
          Length = 93

 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSL 325
                 ++  ++ +A++  + +K G+ F  +A+         S   LG F K  +     
Sbjct: 4   QVRASHILVTSEDDANKILKRIKDGEDFAAVAKRFSSCPSKKSGGDLGWFGKNQMVPEFE 63

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           A +    A +G     +   FGY +  V+  K
Sbjct: 64  AAA--FAADQGTVVGPVKSQFGYHVIKVTGKK 93


>gi|260550086|ref|ZP_05824300.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624]
 gi|260406841|gb|EEX00320.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624]
          Length = 441

 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/405 (12%), Positives = 119/405 (29%), Gaps = 69/405 (17%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           F+      V  V    +  S       +    +  +       E      L  ++LD L+
Sbjct: 31  FAQPTDEVVAIVDNSVILKSDLEQGMAEATHELQSQ-----KKEVPPQQYLQFQVLDQLI 85

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153
                 + ++  G++ D   +   + +      +    S + F  +L    I    Y + 
Sbjct: 86  LRQAQLEQVKRYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--IAPGTYENL 140

Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204
                + L+   +     +  ++ S+  +D      Q +        V ++ ++  +   
Sbjct: 141 RGRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQE 200

Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242
           +   +  V ++  +    N                  +R     P             + 
Sbjct: 201 VQSVAKEVRSKLAQSNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQT 260

Query: 243 EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
              I + +    L+    K  E+           ++            ++  D  ++ LK
Sbjct: 261 TDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLK 320

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA     + G +    SLG  +   +        +  +   G  +      FG
Sbjct: 321 AGEDFATLAATYSNDTGSARDGGSLGWVNPGMMV-PEFDKKMQEIP-VGQISEPFQTQFG 378

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + I  V++ +           KD+ ++ +   A + + E     E
Sbjct: 379 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 413



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 39/285 (13%)

Query: 144 EGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
           +G+ E   E      ++  +  +    +  +      L+Q KR+       D   LN   
Sbjct: 54  QGMAEATHELQSQKKEVPPQQYLQFQVLDQLILRQAQLEQVKRYGI---KPDEKSLNEAV 110

Query: 202 VPAIADPSNAVLTQWFEK-------YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
           +   +   +  L  + +K         +N R    + ++       +   +I+IS+ ++ 
Sbjct: 111 LKVASQSGSKSLEAFQQKLDAIAPGTYENLRGRIAEDLAINRLRQQQVMSRIKISDQDVD 170

Query: 255 AEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
              +  + +        V  +          Q  A E    L +      L ++   +  
Sbjct: 171 NFLKSPQGQAALGNQAHVIHMRISGDNPQEVQSVAKEVRSKLAQSNDLNAL-KKLSTATV 229

Query: 309 DISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN------------ 355
            +         + D+    +   +  + G  T +I    G  +  +              
Sbjct: 230 KVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQ 289

Query: 356 -------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                  I+PS  VS +  K+ I +  +  KA E           
Sbjct: 290 YQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 334


>gi|239502210|ref|ZP_04661520.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB900]
          Length = 436

 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 54/407 (13%), Positives = 124/407 (30%), Gaps = 73/407 (17%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           F+      V  V    +  S       +    +  +       E      L  ++LD L+
Sbjct: 26  FAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 80

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIA---------RSPLFHGKDNKFSHDVFVSRLAREG 145
                 + ++  G++ D   +   +              F  K +  +   + +   R  
Sbjct: 81  LRQAQLEQVKKYGIKPDEKSLNEAVLKVASQSGSKSLEAFQQKFDAIAPGTYENL--RSR 138

Query: 146 INEKEYIDHYTKM--LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
           I E   I+   +   +SR  +    V     S     Q +        V ++ ++  +  
Sbjct: 139 IAEDLAINRLRQQQVMSRIKISDQDVDNFLKSP----QGQAALGNQAHVIHMRISGDNPQ 194

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY------ 257
            + + +   +     +  D     +    +  +       + +     EL A        
Sbjct: 195 EVQNVA-KEVRSQLAQNNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDG 253

Query: 258 --------------------EKNKEKYFSPEIRTVEQLVFPNQ--------KEADEAFQS 289
                               ++N++K   P+ +T   L+ P++        +  D  ++ 
Sbjct: 254 QTTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKR 313

Query: 290 LKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           LK G+ F  LA     + G +    SLG  +   +        +  +   G+ +      
Sbjct: 314 LKAGEDFATLAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQ 371

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           FG+ I  V++ +           KD+ ++ +   A + + E     E
Sbjct: 372 FGWHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 408


>gi|71660705|ref|XP_822068.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Trypanosoma
           cruzi strain CL Brener]
 gi|70887461|gb|EAO00217.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Trypanosoma cruzi]
          Length = 124

 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLA 326
              V  ++      A EA + + +G  F  +A E  +    S   LG   +  +      
Sbjct: 35  KVKVRHILCEKHGRAMEALKKINEGSSFADVAREYSEDKARSGGDLGWKRRGEMVGP-FQ 93

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++ F+L K G     +  SFGY I  V + +
Sbjct: 94  EAAFALPKGGMTPEPVKTSFGYHIILVEDKQ 124


>gi|116048605|ref|YP_792596.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115583826|gb|ABJ09841.1| probable peptidyl-prolyl cis-trans isomerase, PpiC [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 314

 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299
           S+ ELQA Y+ NK +   P +  V Q+         +   +K A E ++    G  F +L
Sbjct: 140 SDAELQAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELYRQAADG-DFAEL 198

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A +          G      +    L  +        K G  +  I G+ G+ +  ++  
Sbjct: 199 ARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 258

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +   +  EV+  +   +R  +  +  K     L
Sbjct: 259 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293



 Score = 37.3 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 5/128 (3%)

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           A+  + E  KR +E        D      K    D P     G D+ G  + A       
Sbjct: 172 AAGGLAEARKRAQELYRQAADGDFAELARKHS--DDPQTARNGGDIGG--LLAQAQLLPA 227

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           +     +    +    +   +G +  V++ E   AR   L+EV   +++  +  +  +  
Sbjct: 228 IRPALERLKVGAVSEPIQGANG-FHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIA 286

Query: 500 SSKANQLV 507
            +  + LV
Sbjct: 287 KAYLDGLV 294


>gi|317493318|ref|ZP_07951740.1| SurA domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918711|gb|EFV40048.1| SurA domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 432

 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 116/374 (31%), Gaps = 78/374 (20%)

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
            +      L  +IL+ L+      Q  + +G++ +   V   I        + N  S D 
Sbjct: 58  QQLPDDATLRHQILERLIMDNIQLQMAKKMGIDINDADVDRAIGNI----AQQNHMSLDQ 113

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
             SRLA +GIN K Y D   K +  ++V                                
Sbjct: 114 MRSRLAADGINYKTYRDQIRKEMLISEVRN------------------------------ 143

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
                V          +    ++      A     +S+IL  + E   + ++ + E    
Sbjct: 144 ---NEVRRRVTILPQEVEALAKQVGAQNGADTELNLSHILIALPENPSQQQVDDAE---- 196

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
                                   ++A +    L KG  F ++A         +  G   
Sbjct: 197 ------------------------QQARQLVDQLNKGADFGKMAVSYSADSQALKGGQMG 232

Query: 317 KEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF-TVSFQEVKKD---I 371
              I +  SL  +    AKKGD    I    G+ I  V++++     VS  EV      +
Sbjct: 233 WGKIQELPSLFAAALQTAKKGDIIGPIRSGVGFHILKVNDLRGGQGNVSVTEVHARHILL 292

Query: 372 ANQ--MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
                M   +A  K++E  ++++   +   + DE +R    VS D       G       
Sbjct: 293 RPSPVMTDDQARAKLQEIAQQIK---SKQITFDEAARA---VSQDPGSALKGGDLGWAVP 346

Query: 430 VAAIPYKEQLLFRV 443
               P     L ++
Sbjct: 347 TMYDPAFRDALMKL 360


>gi|229816170|ref|ZP_04446480.1| hypothetical protein COLINT_03217 [Collinsella intestinalis DSM
           13280]
 gi|229808178|gb|EEP43970.1| hypothetical protein COLINT_03217 [Collinsella intestinalis DSM
           13280]
          Length = 401

 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 99/308 (32%), Gaps = 41/308 (13%)

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKMLS 160
                G+      V  +I        +   +  D  + + LA +G+  + Y ++    ++
Sbjct: 78  AATVNGVNIKEDTVTNQIMSL-----RTGSYDKDADWAAYLASQGLTPESYRENVIDGIA 132

Query: 161 RTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           R  ++       G+  S   LD+A +   +N   D        +      +       + 
Sbjct: 133 RQYLLVEAEKEYGITVSQEDLDKAWKDAVKNYGGDEKAF--VEMIEQVGFT----KDTYL 186

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           +   +  A +  +         E     + S++E+     +N   Y     R    ++F 
Sbjct: 187 ENIKSSLAQQKLK--------DEVAPAEKPSDEEIITYLNENLSTYNGA--RRSSHILFK 236

Query: 279 N------------QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYI--PDV 323
                        + EA +    +  G+ +F + A++  +  S    G    + +     
Sbjct: 237 VAEDATDEQRAKVEAEAQKVLDQINAGEIEFAKAAKKYSEDSSADKGGDVGWDKLTTFVP 296

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF-TVSFQEVKKDIANQMRITKASE 382
              D++  L      + ++  ++GY I   + +       S  EV + I   +     S+
Sbjct: 297 EYQDALSKLG-VDQVSGLVKTTYGYHIIKCTELFEVQAVTSLDEVPEGIRTYVSDMLESQ 355

Query: 383 KVKEDYKR 390
            V   Y  
Sbjct: 356 AVATAYGE 363


>gi|327441514|dbj|BAK17879.1| parvulin-like peptidyl-prolyl isomerase [Solibacillus silvestris
           StLB046]
          Length = 287

 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 98/246 (39%), Gaps = 33/246 (13%)

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--------APEYKRISY-IL 236
             E   +D I+ +   V          L  + E Y +++           E  + +    
Sbjct: 52  LLEQVVIDKILTDQYEVSDKEI--EEQLETYIEMYGESFESALATNGYTEETFKDTIRFQ 109

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
               +  + +E++ +E++  Y++ K +  +        ++   ++EA + ++ + +G  F
Sbjct: 110 LLQQKAMEDVEVTEEEIETYYDQGKYELHT------RHILVETEEEAQQLYEQISEGSDF 163

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A+E  +      +  +LG  S   + + + AD+ ++L + G+ +  +  + G+ I  
Sbjct: 164 ETIAKESSQDSETAENGGNLGWLSISDM-ETTFADAAYAL-ETGEVSEPVESTLGFEIIQ 221

Query: 353 VSNIKPSFTVS-FQEVKKDIANQMRITKA---------SEKVKEDYKRLEEFLALGTSMD 402
           + + +     +  +E K++I   +R             +  +KE    +++    G   +
Sbjct: 222 LVDKREVKDYALLEEQKEEIKKTLRERIVANTEWETVEARLLKEANVTIKDADFKGAFSE 281

Query: 403 EISRRE 408
            ++  E
Sbjct: 282 TLNEEE 287


>gi|15606786|ref|NP_214166.1| hypothetical protein aq_1695 [Aquifex aeolicus VF5]
 gi|2984018|gb|AAC07562.1| putative protein [Aquifex aeolicus VF5]
          Length = 296

 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 48/376 (12%), Positives = 100/376 (26%), Gaps = 117/376 (31%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           I +++ F+ F+             S  V  V   KV        +      I+       
Sbjct: 5   ILVILFFIGFIF------------SQIVAEVDGYKVTKEELDTLFHVFWKRITHLSSAKP 52

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
             E  R   +D       V+   + +  + +G+E     +   I                
Sbjct: 53  TQEDKRIFLIDY------VADLLILKEAKKMGIEVSEKEINDFI---------------- 90

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
                                K + R       +  ++   L+     +   E       
Sbjct: 91  --------------------RKYVGRKIKEKSVINAVKAEILVEKLVDKLMKEQ------ 124

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
                      +PS  +L  ++E YK  +  P   ++                       
Sbjct: 125 ---------ELNPSEDILRAYYEFYKREFYRPSSVKLL---------------------- 153

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
                              +   ++KEA+   Q LK+G+          + +       +
Sbjct: 154 ------------------GIYVKSKKEAERISQILKQGEVPST------EDVKVSKPLWY 189

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           S   +P     +  F     G+ +  I  + GY++  + + KP+  + F+  K  +    
Sbjct: 190 SIPTLPKYIRRN--FRTLSVGEVSKPIKINDGYLVFKILDKKPAGFIPFERAKSLVKKMY 247

Query: 376 RITKASEKVKEDYKRL 391
              K  E  K+    +
Sbjct: 248 LKEKRKEVFKKWLSEV 263



 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 58/154 (37%), Gaps = 10/154 (6%)

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS--RREKIVSIDLPLVDFAG 422
           +++   +  +  +  + + ++  Y+  +      +S+  +    + K  +  +  +   G
Sbjct: 114 EKLVDKLMKEQELNPSEDILRAYYEFYKREFYRPSSVKLLGIYVKSKKEAERISQILKQG 173

Query: 423 KDVKGKEVA-------AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
           +    ++V        +IP   + + R F           + + DG Y+  +I +  PA 
Sbjct: 174 EVPSTEDVKVSKPLWYSIPTLPKYIRRNFRTLSVGEVSKPIKINDG-YLVFKILDKKPAG 232

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
               E   + VKK +   K  E      ++++ +
Sbjct: 233 FIPFERAKSLVKKMYLKEKRKEVFKKWLSEVLKK 266


>gi|254244936|ref|ZP_04938258.1| hypothetical protein PA2G_05813 [Pseudomonas aeruginosa 2192]
 gi|126198314|gb|EAZ62377.1| hypothetical protein PA2G_05813 [Pseudomonas aeruginosa 2192]
          Length = 314

 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299
           S+ ELQA Y+ NK +   P +  V Q+         +   +K A E ++    G  F +L
Sbjct: 140 SDAELQAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELYRQAADG-DFAEL 198

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A +          G      +    L  +        K G  +  I G+ G+ +  ++  
Sbjct: 199 ARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 258

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +   +  EV+  +   +R  +  +  K     L
Sbjct: 259 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293



 Score = 37.3 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 5/128 (3%)

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           A+  + E  KR +E        D      K    D P     G D+ G  + A       
Sbjct: 172 AAGGLAEARKRAQELYRQAADGDFAELARKHS--DDPQTARNGGDIGG--LLAQAQLLPA 227

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           +     +    +    +   +G +  V++ E   AR   L+EV   +++  +  +  +  
Sbjct: 228 IRPALERLKVGAVSEPIQGANG-FHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIA 286

Query: 500 SSKANQLV 507
            +  + LV
Sbjct: 287 KAYLDGLV 294


>gi|167835488|ref|ZP_02462371.1| survival protein SurA, putative [Burkholderia thailandensis MSMB43]
          Length = 448

 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/410 (11%), Positives = 121/410 (29%), Gaps = 68/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + Q+   V  +++     L  ++L+ +V     
Sbjct: 39  DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+  D+  V   + R      + N    D + +R+  +G+    ++      L
Sbjct: 94  VQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDLFVRDARTEL 149

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211
             + +    V   +  S+  +               ++  +++I +        AD   A
Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPTNAPQADIDAA 209

Query: 212 VLTQ-------------WFEKYKDN-------------YRAP-----EYKRISYILFDVH 240
                            +    K               +++P     +       L    
Sbjct: 210 QKKADGLLQQALASGANFERLAKSQSEADDAKKGGDLGFKSPSSLPSDVVDAVSKLRPGE 269

Query: 241 EKEKKIEISND-ELQAEYEKNKEKYFSPE----IRTVEQLVF-----PNQKEADE----A 286
                I + +  E+    E+   +  +         V  ++       ++ +A +     
Sbjct: 270 VNPALIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329

Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + ++ G  F + A    + G +     LG  S           ++ +L + G  +  + 
Sbjct: 330 RRQIEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNTL-QDGQVSNPVR 387

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +GY +  V   + +   S Q+        +   KA +   +  + L +
Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436


>gi|149280301|ref|ZP_01886423.1| peptidyl-prolyl cis-trans isomerase (survival protein) [Pedobacter
           sp. BAL39]
 gi|149228990|gb|EDM34387.1| peptidyl-prolyl cis-trans isomerase (survival protein) [Pedobacter
           sp. BAL39]
          Length = 454

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 93/306 (30%), Gaps = 72/306 (23%)

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
           L  I+Q+    +NS    +  +   IL  L++   L Q  E   +  D  +V  E+    
Sbjct: 39  LSDINQQYAQYLNSGNPSNESVKCLILRELLTTKLLKQQAEIDSVMVDDSQVDEEV---- 94

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
                           ++ R G       +   + L+R+ +               D+ +
Sbjct: 95  ----------DQRMRYQIQRAG-----GEERLEQFLNRSILQ------------YKDEIR 127

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRISYILFDVHE 241
               E      +     ++      +   + ++F+ YK +     P    +  I+     
Sbjct: 128 PEIKEQMISRKMK---GNITQDVSVTPLEVKKYFDSYKKDSLPDIPTEFEVGEIVLHP-- 182

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
                 ++  E Q  Y+K                        D     +K G+ F  LA+
Sbjct: 183 -----TLTKAEKQRFYDK-----------------------IDALRLRVKSGEDFAFLAK 214

Query: 302 ----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               + G +     LG F +  +         F L K G+ +PV     GY I  V   +
Sbjct: 215 SYSEDPGSAPDGGDLGFFDRAQMVK-EFTAWAFKL-KAGEISPVFETEHGYHILQVIERR 272

Query: 358 PSFTVS 363
                +
Sbjct: 273 GEQVQA 278


>gi|118576368|ref|YP_876111.1| parvulin-like peptidyl-prolyl isomerase [Cenarchaeum symbiosum A]
 gi|3599386|gb|AAC62692.1| peptidyl-prolyl cis/trans isomerase [Cenarchaeum symbiosum]
 gi|118194889|gb|ABK77807.1| parvulin-like peptidyl-prolyl isomerase [Cenarchaeum symbiosum A]
          Length = 92

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPD 322
            +      ++   Q EA    + LK G+KF +LA+E     G +  D SLG F +  +  
Sbjct: 2   ADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVK 61

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
               D+ F L + G+ +  +   FGY +  
Sbjct: 62  P-FEDAAFRL-QVGEVSEPVKSEFGYHVIK 89


>gi|320642095|gb|EFX11446.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. G5101]
          Length = 428

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 121/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++         +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEARNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEARNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|300816090|ref|ZP_07096313.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
 gi|300531297|gb|EFK52359.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
          Length = 428

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V        +  
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152

Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               ++   +    +N +   + L++  +P   +P++  + +  E               
Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211

Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268
           +    +     +  ++          EL   + +        +                 
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSAAKKGDIVGPIRSGVGFHILKVN 271

Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306
                             ++         ++A    ++    +K GK  F   A+E  + 
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               + G    ++   I D +  D++  L  KG  +  +H SFG+ +  + + + +   +
Sbjct: 332 PGSANQGGDLGWATADIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               K      +   K SE+     + 
Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416



 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  ++I I   E+++  ++   +  +     +  ++ P 
Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       + +A       + G  F +LA         ++ G      I +   + 
Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S  +S  EV    I  +       E+ 
Sbjct: 244 AQALSAAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   +++   +  G +    +   K  S D    +  G           P     L R+
Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRL 360


>gi|77361548|ref|YP_341123.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas
           haloplanktis TAC125]
 gi|122070669|sp|Q3IFD3|SURA_PSEHT RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|76876459|emb|CAI87681.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 431

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/370 (10%), Positives = 110/370 (29%), Gaps = 64/370 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  V +  +  S       +      ++     + E  +   L  + ++ LV+   +
Sbjct: 28  DKVIGIVNQGVILKSEVDTIVNRVKKQAEEQ-----SQELPKDETLRVQAVERLVNQTLM 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E +GLE    ++   +A      G     S       +   G + + Y +   K +
Sbjct: 83  MQMAERMGLEISDSQLDQTLASMAKEQGG----SIADLRRTIEGSGESFQAYREEIRKEI 138

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYF------ENRSVDYIVLN------NRHVPAIA 206
           +   V+       +  S   +D   +         E   + +I+++         + +  
Sbjct: 139 TTQQVMRANVDRRVYVSEQEVDNLLKIMESQGQNAEEYDIGHILIDIPSDASADEIASAK 198

Query: 207 DPSNAVLTQWFEKYKDNYR-----------APEYKRISYILFDVHEKEKKIEISNDE--- 252
             ++ V+    ++    ++           A E  ++ ++  +         +   +   
Sbjct: 199 TRADKVIELLNDE--QEFKRIAISSSSGSQALEGGQLGWMGINEMPSLFAEAVKGKKQGA 256

Query: 253 ------------LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSL----- 290
                       +    +    +           ++       ++++A            
Sbjct: 257 IIGPLRSGAGFHIIKVQDVRGRQVVETTETRSRHILIKPSIILSEEKARSMLAGFVKDLR 316

Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
                F +LA+E  +       G    ++       +  D++ SL K+ + +      FG
Sbjct: 317 ADKADFAKLAKEYSEDPGSALKGGEYDWADPTSYVPAFRDTLLSL-KQNEISEPFRSQFG 375

Query: 348 YVIAHVSNIK 357
           + I  + + +
Sbjct: 376 WHIVQLLDTR 385



 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 72/207 (34%), Gaps = 25/207 (12%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN 279
             YR    K I+         ++++ +S  E+    +  + +  + E   +  ++   P+
Sbjct: 128 QAYREEIRKEITTQQVMRANVDRRVYVSEQEVDNLLKIMESQGQNAEEYDIGHILIDIPS 187

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQ-------------GKSLSDISLGSFSKEYIPDVSLA 326
              ADE   +  +  K I+L  ++              ++L    LG      +P +  A
Sbjct: 188 DASADEIASAKTRADKVIELLNDEQEFKRIAISSSSGSQALEGGQLGWMGINEMPSL-FA 246

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKAS 381
           +++    K+G     +    G+ I  V +++    V   E +     I     +   KA 
Sbjct: 247 EAVKG-KKQGAIIGPLRSGAGFHIIKVQDVRGRQVVETTETRSRHILIKPSIILSEEKAR 305

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRRE 408
             +    K   +  A      ++++  
Sbjct: 306 SMLAGFVK---DLRADKADFAKLAKEY 329


>gi|213157107|ref|YP_002319152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acinetobacter
           baumannii AB0057]
 gi|215483612|ref|YP_002325833.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301345175|ref|ZP_07225916.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB056]
 gi|301511287|ref|ZP_07236524.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB058]
 gi|332851812|ref|ZP_08433737.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150]
 gi|332865808|ref|ZP_08436592.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113]
 gi|193077182|gb|ABO11972.2| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC
           17978]
 gi|213056267|gb|ACJ41169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acinetobacter
           baumannii AB0057]
 gi|213989120|gb|ACJ59419.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332729819|gb|EGJ61154.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150]
 gi|332735020|gb|EGJ66105.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113]
          Length = 436

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/405 (12%), Positives = 121/405 (29%), Gaps = 69/405 (17%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           F+      V  V    +  S       +    +  +       E      L  ++LD L+
Sbjct: 26  FAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 80

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153
                 + ++  G++ D   +   + +      +    S + F  +L    I    Y + 
Sbjct: 81  LRQAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--IAPGTYENL 135

Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204
                + L+   +     +  ++ S+  +D      Q +        V ++ ++  +   
Sbjct: 136 RSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQE 195

Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242
           + + +  V +Q  +    N                  +R     P             + 
Sbjct: 196 VQNVAKEVRSQLAQSNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQT 255

Query: 243 EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
              I + +    L+    K  E+           ++            ++  D  ++ LK
Sbjct: 256 TDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLK 315

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA     + G +    SLG  +   +        +  +   G+ +      FG
Sbjct: 316 AGEDFATLAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFG 373

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + I  V++ +           KD+ ++ +   A + + E     E
Sbjct: 374 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 408



 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 39/285 (13%)

Query: 144 EGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
           +G+ E   E      ++  +  +    +  +      L+Q K++       D   LN   
Sbjct: 49  QGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILRQAQLEQVKKYGI---KPDEKSLNEAV 105

Query: 202 VPAIADPSNAVLTQWFEK-------YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
           +   +   +  L  + +K         +N R+   + ++       +   +I+IS+ ++ 
Sbjct: 106 LKVASQSGSKSLEAFQQKLDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVD 165

Query: 255 AEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
              +  + +        V  +          Q  A E    L +      L ++   +  
Sbjct: 166 NFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQSNDLNAL-KKLSTATV 224

Query: 309 DISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN------------ 355
            +         + D+    +   +  + G  T +I    G  +  +              
Sbjct: 225 KVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQ 284

Query: 356 -------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                  I+PS  VS +  K+ I +  +  KA E           
Sbjct: 285 YQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 329


>gi|220922111|ref|YP_002497412.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           nodulans ORS 2060]
 gi|219946717|gb|ACL57109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           nodulans ORS 2060]
          Length = 277

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 56/157 (35%), Gaps = 17/157 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----------ADEAFQSLKKGKK 295
           E + +E +  YE+N+ ++ +P++     ++F  +K+           A      LK    
Sbjct: 99  EPTEEECRRYYERNRARFRAPDLVEASHILFAARKDDATGYELARLNARTVVAMLKADPD 158

Query: 296 -FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F +LA       S     SLG  +           ++  +      +  +   +G+ + 
Sbjct: 159 TFEELARVHSACPSAELGGSLGQVTTGQTT-PEFEAALLGMRPGETSSEPVETRYGFHVI 217

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
            +       T+ F+ V++ I  +        + +  Y
Sbjct: 218 RLGRRIDGCTLPFEAVRQRI-AEYLSEAVRRRAQAQY 253


>gi|78061944|ref|YP_371852.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
 gi|77969829|gb|ABB11208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
          Length = 296

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 71/180 (39%), Gaps = 19/180 (10%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----------FQSLKKGKKFI 297
           S+ ELQ+ Y+KN+  + +P    V Q+       AD A             S  +   F 
Sbjct: 122 SDTELQSAYDKNRAAFTAPRALHVAQIYIAVPPNADAATLDKARKQAADLASRARSGDFA 181

Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            LA+   +  +  + G    F  + +   ++  +  +L K G  +  I    G+ +  + 
Sbjct: 182 ALAKANSQDKASAANGGDLGFVPDQLMVPAVRQAADAL-KPGQVSAPIQTPAGFHVVKLI 240

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           +++ +      +VK+ +   +R  +  +  +    +L    A    ++E + ++ + S  
Sbjct: 241 DVRAAAPRPLADVKEQLRAMLRAQRTQQNAQAYLAKL----AANAPINEDALKKALASAR 296



 Score = 43.8 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 42/142 (29%), Gaps = 3/142 (2%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE--QLLFR 442
             D   L++       +   +R     ++             G ++  +P +     + +
Sbjct: 155 NADAATLDKARKQAADLASRARSGDFAALAKANSQDKASAANGGDLGFVPDQLMVPAVRQ 214

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                 P      +  P G +  V++ +   A  R L +V   ++   +  +T +   + 
Sbjct: 215 AADALKPGQVSAPIQTPAG-FHVVKLIDVRAAAPRPLADVKEQLRAMLRAQRTQQNAQAY 273

Query: 503 ANQLVLEYSKEGKNFRDIGKNL 524
             +L           +    + 
Sbjct: 274 LAKLAANAPINEDALKKALASA 295


>gi|330507465|ref|YP_004383893.1| peptidyl-prolyl cis-trans isomerase C [Methanosaeta concilii GP-6]
 gi|328928273|gb|AEB68075.1| Peptidyl-prolyl cis-trans isomerase C [Methanosaeta concilii GP-6]
          Length = 94

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVS 324
                 ++   +K+A E  + L  G + F Q+A +  +  S      LG F K  +    
Sbjct: 4   EVHAAHILCKTEKKALEVKELLASGQESFAQMARKYSQCPSGKSGGDLGWFGKGRMV-PE 62

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
              + F   +KG     +   FGY +  V + K
Sbjct: 63  FEKAAFE-GEKGKIIGPVKSQFGYHLIRVLDKK 94


>gi|304396535|ref|ZP_07378416.1| Peptidylprolyl isomerase [Pantoea sp. aB]
 gi|304356044|gb|EFM20410.1| Peptidylprolyl isomerase [Pantoea sp. aB]
          Length = 431

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 111/382 (29%), Gaps = 66/382 (17%)

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
           Q+ G  +  ++     L  +IL+  +    + Q  +  G++    ++   I         
Sbjct: 54  QQAGQQLPDDK----TLRHQILERQIMDNIILQMGDKAGVQISDEQLDQAIQNIAA---- 105

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FY 186
            NK S D   SRLA +G+N   Y     K ++  +V        +      +D   +   
Sbjct: 106 QNKMSLDQLRSRLAYDGMNYSVYRSQIRKEMTIAEVRNNEVRRRITILPQEVDTLAKQIG 165

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            +N     + +++  +P   +P+   + +  E               +    V       
Sbjct: 166 SQNSQGTELNVSHILLPLPENPTQQQVDEQ-ETLAKQLVGELKNGADFGKMAVTYSADSQ 224

Query: 247 EISN--------DELQAEYEKNKEKYFSPE-----------------------------I 269
            +          +EL   + +        +                              
Sbjct: 225 ALKGGNMGWGKIEELPTLFAQALSSAKKGDIVGPIRSGVGFHILKVNDLRGENKNVSVTE 284

Query: 270 RTVEQLVFP-----NQKEADEAFQSLKKG-----KKFIQLAEEQGKSLSDISLGS---FS 316
                ++         ++A    + +          F   A++        + G    ++
Sbjct: 285 VHSRHILLKPSPILTDEQARAQLEQIANDIRSGKTTFAAAAKQYSDDPGSANQGGDLGWT 344

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
              + D +  D++  L KKG  +  +H SFG+ +  + + +                  R
Sbjct: 345 SPEVFDPAFRDALLRL-KKGQTSQPVHSSFGWHLIQLLDTRQVDKTD----AAQKERAYR 399

Query: 377 ITKASEKVKEDYKRLEEFLALG 398
           +    +  +E    ++E  A  
Sbjct: 400 MLFNRKFAEEAQTWMQEQRASA 421



 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%)

Query: 155 YTKMLSRTDVVGMFV------GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
               +    ++   +       G++ S+  LDQA +                ++ A    
Sbjct: 66  LRHQILERQIMDNIILQMGDKAGVQISDEQLDQAIQ----------------NIAAQNKM 109

Query: 209 SNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
           S   L     +       YR+   K ++      +E  ++I I   E+    ++   +  
Sbjct: 110 SLDQLRSRLAYDGMNYSVYRSQIRKEMTIAEVRNNEVRRRITILPQEVDTLAKQIGSQNS 169

Query: 266 SPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                 V  ++ P  +             A +    LK G  F ++A         +  G
Sbjct: 170 QGTELNVSHILLPLPENPTQQQVDEQETLAKQLVGELKNGADFGKMAVTYSADSQALKGG 229

Query: 314 SFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD- 370
           +     I +  +L     S AKKGD    I    G+ I  V++++  +  VS  EV    
Sbjct: 230 NMGWGKIEELPTLFAQALSSAKKGDIVGPIRSGVGFHILKVNDLRGENKNVSVTEVHSRH 289

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           I  +       E+ +   +++   +  G +    +   K  S D    +  G        
Sbjct: 290 ILLKPSPILTDEQARAQLEQIANDIRSGKT--TFAAAAKQYSDDPGSANQGGDLGWTSPE 347

Query: 431 AAIPYKEQLLFRV 443
              P     L R+
Sbjct: 348 VFDPAFRDALLRL 360


>gi|212636811|ref|YP_002313336.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
 gi|212558295|gb|ACJ30749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
          Length = 434

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 106/326 (32%), Gaps = 59/326 (18%)

Query: 84  GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
            L  ++++ L+      Q  + IGL     ++   IA            S +   +++  
Sbjct: 67  ALRTQVIERLILTRLQMQMADRIGLHIGDLQLDQTIANIAKEQN----ISVEDMRAQIES 122

Query: 144 EGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN--RSVDY------ 194
           +G +  +Y +   + ++  ++        ++ S   ++       E   + V++      
Sbjct: 123 DGTSFAQYREQLREEVTLGEIQRIQVQRRIQVSPQEINNLVSLINEQGLKDVEFQIGHIL 182

Query: 195 IVLNNRHVPAIADPS----NAVLTQWFEKYKDNYR-----------APEYKRISYILFDV 239
           I + +    A  + S    + VL +  +   D++R           A E     Y+  + 
Sbjct: 183 IDVPSDATSAQLEASSKRADVVLKRLKDG--DDFRSIAIAASSGPKALEGGIWDYMNINE 240

Query: 240 HEKEKKIEISNDELQAEY---------------EKNKEKYFSPEIRTVEQLVFP-----N 279
                   +++ ++                   +    +    E      ++       +
Sbjct: 241 MPTLFAEVVNDAKVNDIIGPIKSGAGLHILKIMDARGLQTQEIEEVKSRHILLKPSPILS 300

Query: 280 QKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFS 331
           ++ A    D     ++ G+ KF  +A +  +       G       P+    +   ++ S
Sbjct: 301 EERAKGMMDRFLAQIRSGEAKFEDIARQYSEDPGSAVKGGELGWADPNVWVPAFKQALNS 360

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIK 357
           L KKG+ +     + G+ I  +   +
Sbjct: 361 L-KKGEISEPFRSTHGWHIVQLEGRR 385



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 105/303 (34%), Gaps = 31/303 (10%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             +L+R  +      G+   +L LDQ      + +++     +   + A  +       Q
Sbjct: 75  RLILTRLQMQMADRIGLHIGDLQLDQTIANIAKEQNI-----SVEDMRAQIESDGTSFAQ 129

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           + E+ ++     E +RI        + +++I++S  E+        E+        +  +
Sbjct: 130 YREQLREEVTLGEIQRI--------QVQRRIQVSPQEINNLVSLINEQGLKDVEFQIGHI 181

Query: 276 VF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322
           +              + K AD   + LK G  F  +A         +  G +    I + 
Sbjct: 182 LIDVPSDATSAQLEASSKRADVVLKRLKDGDDFRSIAIAASSGPKALEGGIWDYMNINEM 241

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKAS 381
            +L   + + AK  D    I    G  I  + + +   T   +EVK   I  +     + 
Sbjct: 242 PTLFAEVVNDAKVNDIIGPIKSGAGLHILKIMDARGLQTQEIEEVKSRHILLKPSPILSE 301

Query: 382 EKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
           E+ K    R L +  +     ++I+R+    S D       G+         +P  +Q L
Sbjct: 302 ERAKGMMDRFLAQIRSGEAKFEDIARQY---SEDPGSAVKGGELGWADPNVWVPAFKQAL 358

Query: 441 FRV 443
             +
Sbjct: 359 NSL 361


>gi|50085462|ref|YP_046972.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ADP1]
 gi|49531438|emb|CAG69150.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ADP1]
          Length = 451

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/411 (13%), Positives = 115/411 (27%), Gaps = 77/411 (18%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           F+      V  V    +  S       +    +  +            + L  ++LD L+
Sbjct: 31  FAAPTDEVVAIVDNSVILKSDLEQGVAEAQHQLEAQ---KKTVPPLNYLQL--QVLDQLI 85

Query: 95  SGATLDQFIEDIGLEADHGRVWGE---------IARSPLFHGKDNKFSHDVFVSRLAREG 145
                 + ++  G++ D   +            I     F  K +  +   + S   R  
Sbjct: 86  LRQAQLEQVKRYGIKPDENTLNDAVLKVASQSGIKSLSAFQQKLDAIAPGTYASL--RNR 143

Query: 146 INEKEYIDHYTKMLSRTDV--------------VGMFVGGMRP----------SNLLLDQ 181
           I E   I+   +    + +               G  + G +           S++   Q
Sbjct: 144 IGEDLAINRLRQQQVMSRIKISDQDVANFLKSPQGQAMLGSQVHVIHARISAQSDVDPQQ 203

Query: 182 AKRFYFE-----NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            +    +     N S D   ++ +          A +      Y+D    P         
Sbjct: 204 LQSVAQQVKQALNESNDITAISKKFSTKDIKVEGADM-----GYRDLAELPSELAARVSP 258

Query: 237 FDVHEKEKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADE 285
               +    I + +    L+    KN E+           ++            ++  D 
Sbjct: 259 LQAGQTTDLINVRDGIHVLKLIERKNSEQKAIVTQYQTRHILIQPSEVMSAEMAKQTIDS 318

Query: 286 AFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
            +  LK G+ F  LA     + G +    SLG  +   +        + +    G  +  
Sbjct: 319 IYNRLKAGEDFTTLAATYSADTGSARDGGSLGWVTPGSMV-PEFESKMKN-TPVGQISEP 376

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               FG+ I  V+  +           KD+ ++ +   A + + E     E
Sbjct: 377 FQTQFGWHILQVTATRE----------KDMTHEYQERMARQVLGERQFDSE 417


>gi|310639515|ref|YP_003944273.1| ppic-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           polymyxa SC2]
 gi|309244465|gb|ADO54032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           polymyxa SC2]
          Length = 372

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM----FVGGMRPSNLLLDQAK 183
           K    + + F   ++       EY         R  +V       +   +  +   ++  
Sbjct: 53  KGGTITENEFNQEISMMKFLYPEYEAALASDQVREQIVKQEVVYKLLAAKADDKAKEEGA 112

Query: 184 RFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +   E        +         +    +   +  +F                       
Sbjct: 113 KQGNEQLEQYKKSVGEDKFKTFLSDQKLTEQGVKDYF-----------------TRVMTV 155

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAFQ 288
              +  ++++D+L+ E+EKNK+++ +  +R V  + F + K             A E   
Sbjct: 156 INSETNKVTDDQLKQEFEKNKDQFTTATVRHVL-INFEDPKTKKQRTKEATLKLAKEVKA 214

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGS 345
            L  G  F  +A++  +     S G   +         +  ++             +   
Sbjct: 215 KLDGGADFATIAKKYSEDPGSASNGGLYENASVAQWVPAFKEAA-ETQPINKIGEPVETE 273

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +GY +  V +       +F ++K +    ++   A E ++   + 
Sbjct: 274 YGYHVIKVESRNE---PTFDKLKDNEKAALKNKLAGESIQNFTEN 315


>gi|34498389|ref|NP_902604.1| peptidyl-prolyl cis-trans isomerase [Chromobacterium violaceum ATCC
           12472]
 gi|34104243|gb|AAQ60602.1| probable peptidyl-prolyl cis-trans isomerase [Chromobacterium
           violaceum ATCC 12472]
          Length = 242

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 19/180 (10%)

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------ 279
           A E + I  +L    +      I     +  Y++  E++ + E      ++ P       
Sbjct: 54  ADEQQAIQTLLDSKLQVPA---IDEASCREFYDRYPERFSAGESAVASHILLPKGEGLEA 110

Query: 280 ---QKEADEAFQSLKKGKK-FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332
              + +A+   +  +     F  LA+E     S     SLG F +  +       ++FS 
Sbjct: 111 SLIKAKAEGILEEAQANPSRFAALAQEHSTCPSGKQGGSLGQFGRGQMV-PEFEQAVFS- 168

Query: 333 AKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            + G  TP ++   FGY I  V        + F EVK+ + + +     ++ + E    L
Sbjct: 169 TEAGQITPHLVETQFGYHIIQVEQRAEGGKIGFDEVKERLQHYLADLAVNQAMHEYLNML 228


>gi|313637843|gb|EFS03178.1| foldase protein PrsA 1 [Listeria seeligeri FSL S4-171]
          Length = 160

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI---PDVSLAD 327
           TV  ++  ++  A E    LK G+KF  LA+E     +  + G     +     D +   
Sbjct: 6   TVRHILVDDEATAKEVQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGTGEMDEAFEK 65

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQMRITKASEKV 384
           + ++L K  D + ++  S+GY +  +       T +  + K     I +Q+     +  +
Sbjct: 66  AAYALEKTDDVSGIVKTSYGYHLIQLVKKIDKTTYAKDKAKVKEAYIQSQLTSENMTAAL 125

Query: 385 KEDYKRLE 392
           K++ K   
Sbjct: 126 KKELKAAN 133


>gi|91790420|ref|YP_551372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
 gi|91699645|gb|ABE46474.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
          Length = 289

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 23/188 (12%)

Query: 221 KDNYRAPEYKRI--SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            D   APE      + I   V  +    + + +E +  YE +K ++   +   V  ++F 
Sbjct: 78  PDALSAPELTEAERTVIETMVDREVTTPQPTEEEGRRYYEAHKPQFVVGQALHVRHILFA 137

Query: 279 NQK---------EADEAFQSLK-KG---KKFIQLAEEQG---KSLSDISLGSFSKEYIPD 322
                        A+ A   L  KG   ++F QLA E      S     LG    +    
Sbjct: 138 VTPGVNVQALTVHAERALLELSHKGVRPERFAQLAAELSNCPSSAQGGDLGWIGPDDCA- 196

Query: 323 VSLADSIFSLAKKGDFTPVIH----GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
             LA  +F L      T V        FG+ I  V   +     +++EV++ IA  + + 
Sbjct: 197 PELATELFHLQHAQTGTGVHPRLFHTRFGFHIIDVLERRSGRQPAYEEVRERIAALLTMQ 256

Query: 379 KASEKVKE 386
             +  + +
Sbjct: 257 SRARALHQ 264


>gi|187927495|ref|YP_001897982.1| SurA domain [Ralstonia pickettii 12J]
 gi|309779803|ref|ZP_07674558.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Ralstonia sp. 5_7_47FAA]
 gi|187724385|gb|ACD25550.1| SurA domain [Ralstonia pickettii 12J]
 gi|308921380|gb|EFP67022.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Ralstonia sp. 5_7_47FAA]
          Length = 500

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/409 (12%), Positives = 108/409 (26%), Gaps = 67/409 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +     +N           +   +    RA  +G   ++L+ L+     
Sbjct: 92  DEVVAVVNTDVITRRELLNRADLVERTFRAQNRPL--PPRADLLG---EVLEQLILERVQ 146

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT-KM 158
            Q  ++ G+      V   +        + N  S     S+L   G+   +Y D    ++
Sbjct: 147 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLKDAGMTYDKYRDDLRQEI 202

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFY--------FENRSVDYIVLNNRHVPA------ 204
           L            ++  +  +D               +  +V  I++             
Sbjct: 203 LLARLREREVDSKVQVYDGEIDNYLAQQGGGTAPAGEQQYNVAQILVPVAEGATDAEKAA 262

Query: 205 ---------IADPSNAVLTQWFEKYKDN--------------YRAPEYKRISYILFDVHE 241
                          A   +                       R P     + +     +
Sbjct: 263 ARKKAEGLLKQAQGGADFAKLARDNSGAQDAAQGGELGLRPIGRLPAVFANAVVDMKAGQ 322

Query: 242 KEKKIEISND--ELQAEYEKNKEK---YFSPEIRTVEQLVFPNQK--EADEAFQSLKK-- 292
              ++  S     +    EK           +   V  ++        AD+A + L    
Sbjct: 323 VASQVVESPAGYHVIKLLEKRASSTAIAAKVQQTQVRHILIKTGPTMSADDARRQLVGLR 382

Query: 293 -----GKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
                G  F   A    + G + +   LG  S   +       ++  L K GD +  +  
Sbjct: 383 DRIVHGYDFGDAARRYSQDGSAGAGGELGWVSPGQLV-PEFEQAMNQL-KPGDVSQPVQS 440

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            FG  +  V   + +   S    +    + +R  K     ++  + L +
Sbjct: 441 QFGVHLIQVEGRREAEV-SGDRERDYARSVIREQKVQAAYEDWLRELRD 488



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 102/307 (33%), Gaps = 50/307 (16%)

Query: 138 VSRLAREGINEKEYIDHYT---------------KMLSRTDVVGMFVGGMRPSNLLLDQA 182
              L R  + E+ +                     +L R         G+R S+  +D+A
Sbjct: 106 RELLNRADLVERTFRAQNRPLPPRADLLGEVLEQLILERVQAQTAKESGIRVSDADVDRA 165

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
                +  ++    L ++   A            ++KY+D+ R      I        E 
Sbjct: 166 VESVAQRNNLSVPQLKSKLKDAGMT---------YDKYRDDLRQ----EILLARLREREV 212

Query: 243 EKKIEISNDELQAEYEKNKEKYF--SPEIRTVEQLVFPNQKEADE------------AFQ 288
           + K+++ + E+     +          +   V Q++ P  + A +              +
Sbjct: 213 DSKVQVYDGEIDNYLAQQGGGTAPAGEQQYNVAQILVPVAEGATDAEKAAARKKAEGLLK 272

Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
             + G  F +LA +   +        LG      +P V  A+++  +      + V+   
Sbjct: 273 QAQGGADFAKLARDNSGAQDAAQGGELGLRPIGRLPAV-FANAVVDMKAGQVASQVVESP 331

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKK-DIANQMRI---TKASEKVKEDYKRLEEFLALGTSM 401
            GY +  +   + S T    +V++  + + +     T +++  +     L + +  G   
Sbjct: 332 AGYHVIKLLEKRASSTAIAAKVQQTQVRHILIKTGPTMSADDARRQLVGLRDRIVHGYDF 391

Query: 402 DEISRRE 408
            + +RR 
Sbjct: 392 GDAARRY 398


>gi|325917324|ref|ZP_08179542.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325536458|gb|EGD08236.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 463

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/407 (11%), Positives = 108/407 (26%), Gaps = 70/407 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S    + +      + +   +   +      L +++L+ LV     
Sbjct: 32  DRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLPPDDV-----LQRQVLERLVLVKLQ 86

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +  G+      +   IA       + N  + D    +LA +G+   ++       +
Sbjct: 87  VGRADGSGIRVSDEELNRAIASI----AQQNGTTVDGLRQKLAADGMAYGDFRSSVRDEI 142

Query: 160 SRTDVVGMFVGG-MRPSNLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAV-- 212
               +   F    +  S   +D    Q      +      +V       A    +     
Sbjct: 143 IVQRLRQSFAQSRISVSEGEVDTALAQQATTGSQYHLAHILVGLPEGATADQIATGQKKV 202

Query: 213 --LTQWFEKYKDNYRAPEYK-----------RISYILFDVHEKEKKIEISN--------- 250
             +    +K + ++ A   +            + +   D         I +         
Sbjct: 203 DGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSLDEIPNAFAQLIRDMQPGQVAGP 262

Query: 251 ------------DELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQS 289
                        E++      ++K  +        ++            + + D     
Sbjct: 263 LRGPSGFQLLKLVEMRDANAGGEKKMVT--EYNARHILVRIGDNQTDAQAKAKIDTLRAR 320

Query: 290 LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           +  G +F   A+E  +  +       LG F  +          +  LA  G  +      
Sbjct: 321 IAGGAEFQATAKESSEDTNSRGQGGDLGWFPADAF-GPDFGKQVEGLA-DGAVSEPFRTQ 378

Query: 346 FGYVIA-HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            G+ I   V + +    +S +  +  I   +   K  E+     + L
Sbjct: 379 AGWHIVQRVGSRQ--TDISAENQRAQIRETIGRRKLEEEYNRYLQEL 423


>gi|33598180|ref|NP_885823.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           parapertussis 12822]
 gi|81713639|sp|Q7W4J5|SURA_BORPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|33566738|emb|CAE38950.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           parapertussis]
          Length = 519

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 102/321 (31%), Gaps = 54/321 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V +  +       + K     + ++ G  V  ER     L K++L  L+     
Sbjct: 55  DGIAAIVNKDVITLREVREASKLASADLQKR-GIQVPDER----TLQKQVLQRLIMERLE 109

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q ++ +G+  D  +V   I          NK +     + + + G+  ++Y       +
Sbjct: 110 RQEVDRMGIRVDEAQVDQAINMIAS----RNKITPAAMRAEIEKSGVTWEQYRKSLRDDI 165

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF-E 218
               +                         R+VD          A    S+A +  +  +
Sbjct: 166 RMDRLR-----------------------QRAVD----------ANIIISDAEVDAFLKD 192

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + ++   A   +  +        ++         + A+      +  SP+       V  
Sbjct: 193 QERNPAAAQATRAPAPQQPQPQPRQPAQSGPAMLVLAQILVRVPEGSSPDQ------VAA 246

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            +K+A+      KKG  F  LA        +L    +G+   +  PD+    +  SL+  
Sbjct: 247 LRKKAEGLLARAKKGDDFASLAAANSDGPEALQGGMMGARPLDGWPDL-FVKAAGSLS-A 304

Query: 336 GDFTPVIHGSFGYVIAHVSNI 356
           G  + ++    G+ I  V + 
Sbjct: 305 GQVSGLVQSGNGFHILKVVDR 325



 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 49/147 (33%), Gaps = 16/147 (10%)

Query: 269 IRTVEQLVFPN-----QKEA----DEAFQSLKKGK-KFIQLAEEQGKS---LSDISLGSF 315
                 ++          +A    ++  + L+ G  KF  +A +  +         LG  
Sbjct: 366 QTHARHILIKTSTVMTDDQARQRLEQIRERLQGGAVKFEDMARQYSQDSTAPQGGDLGWV 425

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           +           ++ +L +  + +P +   FG+ +  V   +    VS +  +      +
Sbjct: 426 NPGDTV-PPFEAAMNAL-QPNEISPPVLSPFGWHLIQVLERRE-HDVSDEVQRMRARQLL 482

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMD 402
              +A    ++  ++L     +   ++
Sbjct: 483 FERRAVPAFEDWLEQLRSQAFIDNRLE 509


>gi|300705125|ref|YP_003746728.1| peptidyl-prolyl cis-trans isomerase (ppiase), involved in
           maturation of outer membrane proteins [Ralstonia
           solanacearum CFBP2957]
 gi|299072789|emb|CBJ44144.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Ralstonia
           solanacearum CFBP2957]
          Length = 474

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/408 (11%), Positives = 112/408 (27%), Gaps = 66/408 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +     ++        +  +   +    RA  +G   ++L+ L+     
Sbjct: 67  DEVVAVVNTDIITRRELLDRADLVERTLQAQNRPM--PARADLLG---EVLEQLILERVQ 121

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G+      V   +        + N  S     S+L + G+   +Y +   + +
Sbjct: 122 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLVQSGLAYDKYREDLRQEI 177

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211
               +    V   ++  +  +D              +  +V  I++      +    + A
Sbjct: 178 LLARLRDREVDSKVQVFDGEIDNFLAQQGGGATGEAQEYNVAQILVPVAEDASAEQKAAA 237

Query: 212 ---------------VLTQWFEKY--------------KDNYRAPEYKRISYILFDVHEK 242
                             +                   +   R P     + +     + 
Sbjct: 238 RGKAENLLKQAQGGADFAKLVRDNSSGPEAAQGGELGLRSIGRLPTQFANAVVDLKPGQL 297

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQK--EADEAFQSLKK--- 292
             ++  S          +K    +          V  ++        AD+A + L     
Sbjct: 298 AGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGPTMSADDARRQLAGLRD 357

Query: 293 ----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
               G  F   A    +  S      LG  S   +       ++ +L K G+ +  +   
Sbjct: 358 RIVHGYDFSDAARRYSQDTSASAGGELGWVSPGQLV-PEFEQAM-NLLKPGEVSQPVQSQ 415

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           FG  +  V   + +        +    + +R  K     ++  ++L +
Sbjct: 416 FGVHLIQVEGRRDAEV-PVDRQRDYARSVIREQKVQAAYEDWLRQLRD 462



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/369 (14%), Positives = 117/369 (31%), Gaps = 46/369 (12%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L R         G+R S+  +D+A     +  ++    L ++ V +            ++
Sbjct: 117 LERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVPQLKSKLVQSGLA---------YD 167

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR-TVEQLVF 277
           KY+++ R      I        E + K+++ + E+     +             V Q++ 
Sbjct: 168 KYREDLRQ----EILLARLRDREVDSKVQVFDGEIDNFLAQQGGGATGEAQEYNVAQILV 223

Query: 278 PNQKEA------------DEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPD 322
           P  ++A            +   +  + G  F +L  +      +     LG  S   +P 
Sbjct: 224 PVAEDASAEQKAAARGKAENLLKQAQGGADFAKLVRDNSSGPEAAQGGELGLRSIGRLP- 282

Query: 323 VSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKK-DIANQMRI--- 377
              A+++  L K G     VI    G+ +  + + +   T +  +V +  + + +     
Sbjct: 283 TQFANAVVDL-KPGQLAGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGP 341

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
           T +++  +     L + +  G    + +RR              G    G+ V       
Sbjct: 342 TMSADDARRQLAGLRDRIVHGYDFSDAARRYS-QDTSASAGGELGWVSPGQLVPEFEQAM 400

Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
            LL        P      V    G    +Q++    A    ++      +   +  K   
Sbjct: 401 NLLK-------PGEVSQPVQSQFG-VHLIQVEGRRDAEV-PVDRQRDYARSVIREQKVQA 451

Query: 498 EVSSKANQL 506
                  QL
Sbjct: 452 AYEDWLRQL 460


>gi|32265604|ref|NP_859636.1| hypothetical protein HH0105 [Helicobacter hepaticus ATCC 51449]
 gi|32261652|gb|AAP76702.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 276

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 65/157 (41%), Gaps = 14/157 (8%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLA 300
            +++ +L+  Y++N+ ++   E +    ++  ++ EA E  + L      K   KFI+LA
Sbjct: 112 TMNDAQLRKIYQENEGEFIDQEGK-ARHILVKSESEAKEIIKELDKVGKAKAEAKFIELA 170

Query: 301 EEQGKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
             +          +   LG F +  + D   + + F L         +   FGY I ++ 
Sbjct: 171 NAKSIDPASKQQKNGGDLGVFKRAGM-DPMFSKAAFDLKPGTYTKEPVLTQFGYHIIYLE 229

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                  + +++ KK I N +++      + +  + L
Sbjct: 230 RKSEPKVIPYKDAKKIIENSIKMQSIQGGMMQKIQAL 266


>gi|319790649|ref|YP_004152282.1| hypothetical protein Theam_1685 [Thermovibrio ammonificans HB-1]
 gi|317115151|gb|ADU97641.1| hypothetical protein Theam_1685 [Thermovibrio ammonificans HB-1]
          Length = 428

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 211 AVLTQWFEKYKD-NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
             L   ++K     +   EY     +     E EK I+++++E +A YEKNKE++  P+ 
Sbjct: 232 QALKAGYDKLPRFKHMYEEYYATRAVELFRKELEKGIKVTDEEAKAFYEKNKERFKMPDR 291

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI 329
                  F +++ A EA + L+ GK +  +A   G+  +      + ++  P   +   +
Sbjct: 292 VKAVVFYFKSKERALEAKKMLESGKSWQDVARRLGQFNAKEK--FYYRD--PKDPIGALV 347

Query: 330 F--SLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
           F     KKG    V    FG  YV  +V    P   + ++EVK  +   ++  K  +   
Sbjct: 348 FMNGNPKKGQ---VFVADFGGKYVTVYVEKFVPGGVLPYKEVKNYVKLVLKRQKLRQAEV 404

Query: 386 EDYKRL 391
           E  ++L
Sbjct: 405 EKLRKL 410


>gi|107100164|ref|ZP_01364082.1| hypothetical protein PaerPA_01001186 [Pseudomonas aeruginosa PACS2]
          Length = 314

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299
           S+ ELQA Y+ NK +   P +  V Q+         +   +K A E ++    G  F +L
Sbjct: 140 SDAELQAAYQANKAQLAVPTLYRVSQIFIAASAAGGLAEARKRAQELYRQAADG-DFAEL 198

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A +          G      +    L  +        K G  +  I G+ G+ +  ++  
Sbjct: 199 ARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 258

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +   +  EV+  +   +R  +  +  K     L
Sbjct: 259 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293



 Score = 37.7 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 5/128 (3%)

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           A+  + E  KR +E        D      K    D P     G D+ G  + A       
Sbjct: 172 AAGGLAEARKRAQELYRQAADGDFAELARKHS--DDPQTARNGGDIGG--LLAQAQLLPA 227

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           +     +    +    +   +G +  V++ E   AR   L+EV   +++  +  +  +  
Sbjct: 228 IRPALERLKVGAVSEPIQGANG-FHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIA 286

Query: 500 SSKANQLV 507
            +  + LV
Sbjct: 287 KAYLDGLV 294


>gi|313885295|ref|ZP_07819046.1| putative peptidylprolyl isomerase PrsA1 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619401|gb|EFR30839.1| putative peptidylprolyl isomerase PrsA1 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 316

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 22/241 (9%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-LLDQAKRFYFENRSVDYIVLNNRHVPA 204
           I ++++ +    +  +T +  M +  +   N+   D  K+   E                
Sbjct: 43  ITKEDFYNEMKSLAGKTTLRSMILENVLKQNVKDADALKKSADE-----------EAQEQ 91

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
           +          +  + +         ++          E K+++S++ ++  Y++    Y
Sbjct: 92  LDKVGEDQFNAYLNQMQLGSIDEFKYQLYIRNMFQEVVEGKMDLSDEAIKKFYDE---SY 148

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI---P 321
            +P     +Q++   + EA +    L  G++F  LA+E     +  + G     +     
Sbjct: 149 ETP--MEAQQILVKTEDEAKDVINRLNNGEEFDALAKELSIDEATAANGGLLSPFTSGQM 206

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                D++ +          +   +G+ +     I      +F++VK D+ NQ + +K S
Sbjct: 207 VQEFEDAVKASENGSVTQEPVKSQYGFHVIK--TINNGTKQAFEDVKDDVVNQYKQSKFS 264

Query: 382 E 382
           +
Sbjct: 265 D 265


>gi|327479988|gb|AEA83298.1| NifM protein, putative a peptidyl-prolyl cis/trans isomerase
           [Pseudomonas stutzeri DSM 4166]
          Length = 292

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 88/244 (36%), Gaps = 35/244 (14%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN------AVLTQWFEK---- 219
                S+   +QA+R       ++  VL++     +  P        A +   +E     
Sbjct: 26  APAALSSQQREQAERIVGRQLQLENAVLHSAEACGVVIPDEQVADAWAEIAARYEDPLAL 85

Query: 220 YKDN---------YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
           +K            R    + +              EI++ E+   Y  + E++  P  R
Sbjct: 86  HKALDDSGLDEAGLRQLLARELKVETVLQRVCAGLPEITDTEVSLYYFNHPERFVRPATR 145

Query: 271 TVEQLVFPNQKEADE-------------AFQSLKKGKKFIQLAEEQGKSLSDISLGSFS- 316
              Q++    ++  E             A + L+K ++F + A +  +  S +  GS   
Sbjct: 146 LARQILITVNEDFPENSRTSAWRRINLIAERLLRKPQRFAEQALKHSECPSAMEGGSLGL 205

Query: 317 -KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            +  +    L   +F+L + G+  PV+    G+ +     I P+  +S QEV   +  ++
Sbjct: 206 IRPGVLYPQLEACLFAL-RAGEIGPVVETPLGFHLLFCEEIHPAGHLSLQEVLPHLREKL 264

Query: 376 RITK 379
           R  +
Sbjct: 265 RARQ 268


>gi|94967775|ref|YP_589823.1| hypothetical protein Acid345_0744 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549825|gb|ABF39749.1| hypothetical protein Acid345_0744 [Candidatus Koribacter versatilis
           Ellin345]
          Length = 343

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 100/360 (27%), Gaps = 72/360 (20%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           V  +  V  V    +     +          +Q  G     E      + K  L  +V  
Sbjct: 46  VDETKPVARVNGTVLTERDLLREMYTIFPYAAQHNGVPKKME----PEMRKGALQMIVFE 101

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             + Q             V  +I   P    K                            
Sbjct: 102 ELVYQEA-----------VRRKITFDPSIISKG----------------------EAEMR 128

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
           K          ++     S   + +  R     R++   +L  + V   +  ++A    +
Sbjct: 129 KQFPSQQEFDAWIVAQFGSRQAMHEKMR-----RTMLVQILLKKEVNDKSVVTDAQAKAF 183

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +E     +  PE   I  I     +          + +A                     
Sbjct: 184 YEANSKQFDRPETFSIQTISIIPPQGANPEVKKEADKRAH-------------------- 223

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLA 333
                +A +A ++ K  ++F  LAE+       + +G      +  +P   +  +   + 
Sbjct: 224 -----DAFKAAKATKTYEEFGLLAEKVSDDDWHVKMGDRKAIDRASLP-PDVVKAALVM- 276

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           K G+ + +I     Y +  ++   P+    F EVK  +   M+  K  +      K+L +
Sbjct: 277 KPGEVSDLIQIGPNYTMFRLNAHTPAGRTPFGEVKAKLQEDMKKAKTEQLRGSFDKQLRQ 336


>gi|296390946|ref|ZP_06880421.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa PAb1]
          Length = 314

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299
           S+ ELQA Y+ NK +   P +  V Q+         +   +K A E F+    G  F +L
Sbjct: 140 SDAELQAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELFRQAADG-DFAEL 198

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A +          G      +    L  +        K G  +  I G+ G+ +  ++  
Sbjct: 199 ARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 258

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +   +  EV+  +   +R  +  +  K     L
Sbjct: 259 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293



 Score = 37.7 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 5/128 (3%)

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           A+  + E  KR +E        D      K    D P     G D+ G  + A       
Sbjct: 172 AAGGLAEARKRAQELFRQAADGDFAELARKHS--DDPQTARNGGDIGG--LLAQAQLLPA 227

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           +     +    +    +   +G +  V++ E   AR   L+EV   +++  +  +  +  
Sbjct: 228 IRPALERLKVGAVSEPIQGANG-FHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIA 286

Query: 500 SSKANQLV 507
            +  + LV
Sbjct: 287 KAYLDGLV 294


>gi|268316286|ref|YP_003290005.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
 gi|262333820|gb|ACY47617.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
          Length = 350

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 92/282 (32%), Gaps = 51/282 (18%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           +  +E+    + +L R          ++ +  L+ +  +   E+  V   V++       
Sbjct: 71  LTAEEFRQQLSFILQR-------YPQIQMNPALMPEVHKSIIEDFIVR-HVVDGEIARQG 122

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKR--------------------ISYILFDVHEKEKK 245
                A + Q  E+ +  + +PE  +                    +    F    + + 
Sbjct: 123 IQADPAAVEQELEQIRARFPSPEAFQEALTQDGLTEDSLRGMIAQMVRQRTFREQIESRA 182

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------AFQSLKKG 293
              ++DE++        +    E   V+ ++F     A E               S++ G
Sbjct: 183 TPPTDDEVEQF------RQQQAEEVHVQHILFRLAPNASEEEAAAVKARAQAVLDSIRSG 236

Query: 294 KKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGYV 349
             F ++A    E G +     LG   +    +    ++ F+L   GD T   +   FGY 
Sbjct: 237 ADFAEMARRHSEDGSAQEGGDLGFIRRGETVEP-FEEAAFALRDSGDVTTEPVRTRFGYH 295

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +  +   +    +   E ++ +  + +       ++E   + 
Sbjct: 296 LIRLLERRQGTPMDAAEAREQLLQERKQEAVQHLLEELLAKA 337



 Score = 38.0 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 54/165 (32%), Gaps = 12/165 (7%)

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDI 520
            P  D ++E+      ++         ++  A++            VL+  + G +F ++
Sbjct: 183 TPPTDDEVEQFRQQQAEEVHVQHILFRLAPNASEEEAAAVKARAQAVLDSIRSGADFAEM 242

Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNS 579
            +            +                 F+      V   P+     Y + ++   
Sbjct: 243 ARRHSEDGSAQEGGDLGFIRRGETVEPFEEAAFALRDSGDVTTEPVRTRFGYHLIRLLER 302

Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
           + G   +  +    L Q   ++ +  ++  L ++ +V ++  L+Q
Sbjct: 303 RQGTPMDAAEAREQLLQERKQEAVQHLLEELLAKATVRINPALVQ 347


>gi|153834210|ref|ZP_01986877.1| chaperone SurA [Vibrio harveyi HY01]
 gi|148869398|gb|EDL68404.1| chaperone SurA [Vibrio harveyi HY01]
          Length = 427

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 129/404 (31%), Gaps = 90/404 (22%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            KI+  +LF   L  G++ A   +      V V    +  S    + K       Q  G 
Sbjct: 1   MKIWKSLLFTTLLSCGVTAAPVEL--DKVAVIVNDGVILQSDIDTAMKTLQANARQS-GK 57

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            + S       L  ++++ L+      Q  E IG+  D  R+   IA       ++N  S
Sbjct: 58  SLPSASV----LKDQVVEKLIIDTLQGQEAERIGVRIDDNRLNQAIAEI----ARNNNQS 109

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            +   + +  EG++  E+         R  +                   R     R ++
Sbjct: 110 VEQLAASVQAEGLSYSEF---------REQIRKEIAAS----------EARNALVRRRIN 150

Query: 194 YIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
            +      +    A  +NA +                 +I +I     + + K E+    
Sbjct: 151 ILPAEVDSLADQLAKETNATVQ---------------YKIGHIQLRFSDDKDKSEV---- 191

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSD 309
                                      + EA+   Q LK G  F ++A    K   +L  
Sbjct: 192 ---------------------------EAEANALVQKLKDGADFSEMAYTYSKGPKALQG 224

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
              G   KE +P    AD I  +  KG          G+ I  + ++K   TV+  EV  
Sbjct: 225 GDWGWMRKEEMP-TIFADQI-KMQNKGSIIGPFRSGIGFHILKIEDVKGLETVAVTEVNA 282

Query: 370 D---IANQ--MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
               I     +    A +++ E  +R++   A   +  +++ + 
Sbjct: 283 RHILIKPTVILSDDGAKKELNEFIRRIK---AGEATFGQLATQY 323


>gi|110636617|ref|YP_676824.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279298|gb|ABG57484.1| possible peptidyl-prolyl cis-trans isomerase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 773

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/372 (13%), Positives = 121/372 (32%), Gaps = 55/372 (14%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S  +++V    +    F   + +  G           S  A S    ++ +D        
Sbjct: 39  SPAILTVADDSISTEDFKYIYDKNNGK----------SADAYSRQSIEEYIDLYTKFKLR 88

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE---KEYIDHYT 156
            +  E +GL+            +  F  +   +   +    L  +G+ +   K+  +   
Sbjct: 89  VKEAESLGLD-----------TTAAFKQELAGYQKQLAQPYLTEKGVTDMLVKQAYERMK 137

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
           + +  + ++        P + L+   K      R++     +        DPS       
Sbjct: 138 EEIRASHILIFCNPEATPKDTLIAYNKIVALRERALKGENFDQLAAQYSEDPSAKT---- 193

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK----EKYFSPEIRTV 272
               K +        + Y   +     K   +S   ++ ++  +     ++  S     V
Sbjct: 194 ---NKGDLGYFTALSMVYEFEEAAYNTKVGSVSKP-VRTKFGYHILKVVDRRPSQGQIHV 249

Query: 273 EQLV------------FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFS 316
             ++               + + D+ ++ L+ G  + +L  E    ++       L  FS
Sbjct: 250 AHIMARYSQGMSAEDSILAKNKIDQIYKELQAGTSWNELCGEFSDDVNSRSKNGELQWFS 309

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
              +   S  ++ F+L   G +T  +   +G+ I  +   KP    SF+E++  I  ++ 
Sbjct: 310 TGKMI-PSFENAAFTLTTPGQYTTPVQTPYGWHIIKLLERKPLG--SFEELEPSIRAKVT 366

Query: 377 ITKASEKVKEDY 388
               S+  K+  
Sbjct: 367 KDSRSDLNKKML 378


>gi|303237614|ref|ZP_07324174.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|302482066|gb|EFL45101.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
          Length = 715

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 69/622 (11%), Positives = 171/622 (27%), Gaps = 97/622 (15%)

Query: 48  RQKVPFSSFINSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
            +K+    F    ++    I        ++ +      +  ++   +V+   ++   + +
Sbjct: 50  GKKINVQDFQKLVEEYQDAIKFTMQRDNLSEDELNQ--VKDQVWQQMVTNHVIEADAKKV 107

Query: 107 GLEADHGRVWG--------EIARSPLFHGKDNKFSHDVFVSRLAREG----INEKEYIDH 154
           GL      +           +A++P  + +  +F   +    L         N ++    
Sbjct: 108 GLSVTEQELQNVLNEGTDPMLAQTPFKNQQTGRFDVTILKQFLDEYNKVKTANPQQAEQM 167

Query: 155 -------------YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
                            L       ++ G +  +      A +   E   V    +    
Sbjct: 168 KAAYNYWMFVEKNLRSQLLGQKFQALYAGCVLSNKAEAKLAFKDENEEAQVQLASMAYSS 227

Query: 202 VP-AIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
           +  A    ++  L   +E+ K  +R   E + I Y+ + +   +      N ++ A    
Sbjct: 228 IKDADIKVTDEDLKAKYEELKPMFRQTIETRDIKYVDYKISASQADRNALNKDMAAY--- 284

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319
                                       Q L        +  + G  +  + L   SK Y
Sbjct: 285 ---------------------------QQQLATAVDPALVVSKSGSLIPYLGLPVSSKAY 317

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
                +A  I SL                 I  + +   +                    
Sbjct: 318 QQYPDIASKIDSLGVGTTAVTPNAQDNTLNIVRIMS--KAQLPD----SVQFRQIQVGAA 371

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
             E+       +++ LA G + + I++R       +       ++             Q 
Sbjct: 372 TKEQAATKADSIQKALAGGANFEAIAKRYGQTGEKVWFTGQQYENSTSMNQ----DNRQY 427

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
           +  +   +  ++    V L  G+ + +Q+ +      +    ++  V    K  ++A   
Sbjct: 428 INAI--MNGEVNGIQNVVLTQGN-VILQVLDKKAMTTKTTAAIIKKVIDFSKDTRSA--- 481

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLG-----ASLLTTNQINRMDNENKFFGYDGISQVFS 554
              A     EY  +G    D+ KN G               + D        + +  +F 
Sbjct: 482 ---AFNKFSEYVAKGATLADLEKNAGKYGYRVQEQKNISTAQHDVVGVRATREALKWIFE 538

Query: 555 GPVEMV-KCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIA 608
                + + +   +   ++V  +T             E  + +    +++     +  +A
Sbjct: 539 AKEGDISQLYECGDNDHFMVIALTKVHPQGYRSWDDAEVKEILK--REVIKDKKAEQFMA 596

Query: 609 YLKSQYSVTVHDNLIQRYLDGE 630
            LK      V+     +    +
Sbjct: 597 KLKG-----VNTIAAAQAKGAK 613



 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 107/331 (32%), Gaps = 29/331 (8%)

Query: 262 EKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLG 313
            K   P+     Q+            +AD   ++L  G  F  +A+  G++      +  
Sbjct: 353 SKAQLPDSVQFRQIQVGAATKEQAATKADSIQKALAGGANFEAIAKRYGQTGEKVWFTGQ 412

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDI 371
            +      +      I ++   G+   + +     G VI  V + K   T +   + K +
Sbjct: 413 QYENSTSMNQDNRQYINAIM-NGEVNGIQNVVLTQGNVILQVLDKKAMTTKTTAAIIKKV 471

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
            +  + T+++      + +  E++A G ++ ++ +        +             +V 
Sbjct: 472 IDFSKDTRSA-----AFNKFSEYVAKGATLADLEKNAGKYGYRVQEQKNISTAQ--HDVV 524

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
            +    + L  +F   +           +  +M + + +  P   R  ++   +VK+  K
Sbjct: 525 GVRATREALKWIFEAKEGDISQLYECGDNDHFMVIALTKVHPQGYRSWDD--AEVKEILK 582

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENKFFGYD 547
                +    KA Q + +   +G N     +  GA +   NQI                 
Sbjct: 583 REVIKD---KKAEQFMAKL--KGVNTIAAAQAKGAKVSMVNQITFAAPAFIQATGAAEPA 637

Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
               V +         P++      VF+V  
Sbjct: 638 LSGAVAATATGKFSKNPVKGNAGVYVFQVIK 668


>gi|219852695|ref|YP_002467127.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanosphaerula
           palustris E1-9c]
 gi|219546954|gb|ACL17404.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanosphaerula
           palustris E1-9c]
          Length = 93

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
             +   ++   + +A++  + +  G  F +LA++  +  S      LG F K  +     
Sbjct: 4   QVSAAHILVKTKDQAEDLKKQISAGGNFGELAKKYSECPSGKKGGELGWFGKGMMV-PEF 62

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               F   K+GD    +   FG+ +  +   K
Sbjct: 63  EKVAFE-GKEGDVVGPVKTQFGFHLIKILGQK 93


>gi|226355966|ref|YP_002785706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus deserti
           VCD115]
 gi|226317956|gb|ACO45952.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor
           [Deinococcus deserti VCD115]
          Length = 338

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 7/147 (4%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EEQGK 305
           +  +   Y  N+  +          ++  +Q EA    + L+ G  F ++A    ++ G 
Sbjct: 178 DAVVAGNYNLNRTSFMRQREACARHILVKSQAEAQAVVKELQAGGDFAKIATSKSQDPGS 237

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           +     LG F +  +   +   + F+         ++   FG+ +  VS    +  V   
Sbjct: 238 AAQGGDLGCFGEGDMV-ATFDKASFTGPLN--TPQIVQSEFGWHVVLVSKRTEAGMVPLA 294

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLE 392
           E    I  Q+    A + +     +++
Sbjct: 295 EAAPVIREQLTREAAQKYLNSQIAKMK 321


>gi|307728470|ref|YP_003905694.1| SurA domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307583005|gb|ADN56403.1| SurA domain protein [Burkholderia sp. CCGE1003]
          Length = 468

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/328 (12%), Positives = 89/328 (27%), Gaps = 75/328 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            +    V    +               ++Q+   V  +++     L +++L+ +V     
Sbjct: 57  DTIAAVVNNGVITRRELDERVGLIARRLNQQNAPVPPADQ-----LRQQVLNQMVLERIQ 111

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +++G+  D   V   +                          ++   Y        
Sbjct: 112 LQKAKEVGINIDDAAVQKTL------------------ERLAQANNMSLDTYRARIEAQ- 152

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                      G+  +    D                L  + V +    S+A +  +   
Sbjct: 153 -----------GVPWATFTSDARTELTLSR-------LREKEVDSKVTVSDAEVANYIAS 194

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                R P     S +       +  +     +++A                        
Sbjct: 195 Q----RGPNAGATSDLHMQHIFLKAPLNAPQTDIEA-----------------------A 227

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336
           QK+A+      K G  F +LA+   ++        +G  S   +P      +  SL + G
Sbjct: 228 QKKAEALLAEAKGGANFEKLAKSNSQAPDAGKGGDMGYASPSKLP-PEFVKAASSL-RPG 285

Query: 337 DFTP-VIHGSFGYVIAHVSNIKPSFTVS 363
              P VI  + G+ I  + + +     S
Sbjct: 286 QVNPEVIRTNDGFEIVRLVDRRTGQGTS 313


>gi|190572865|ref|YP_001970710.1| putative survival protein SurA [Stenotrophomonas maltophilia K279a]
 gi|190010787|emb|CAQ44396.1| putative survival protein SurA precursor [Stenotrophomonas
           maltophilia K279a]
          Length = 447

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/407 (10%), Positives = 109/407 (26%), Gaps = 70/407 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    +  S    +        + +   +   +      L +++L+ LV     
Sbjct: 33  DRIAAVVDEDVILQSELQRAIANIKAQYAGRENQLPPEDV-----LSRQVLERLVLVKLQ 87

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +  G+      +   +        + N  + D    RLA +GI+  ++       +
Sbjct: 88  VARAQGSGIRVSDQELNQAMNSI----AQQNGSNLDALRQRLAHDGIDFNDFRASVRDEI 143

Query: 160 SRTDVVGMFVGG-MRPSNLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPS----N 210
           +   +   F    +  S   +D    Q      +      +V       A    +     
Sbjct: 144 TVQRLRQSFAQSRISVSEGEVDAALKQQATVGNQYHLAHILVALPDGANADQIATGQKKA 203

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEI 269
             +    +K + ++ A     + Y       +   +   S DE+   + +  EK    E+
Sbjct: 204 DGVKALLDKGELDFNA---AAVRYSDSPNALEGGDLGWRSLDEIPQAFAQMMEKMKPGEV 260

Query: 270 ------------------RTVE--------------QLVF---------PNQKEADEAFQ 288
                             R                  ++            + + D    
Sbjct: 261 VGPIRGPSGFQLLKLVEVRDASATAGASTVTEYHGRHILVRVDDHQTDAAAKAKIDTLRA 320

Query: 289 SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            +  G  F  +A+E  +  +       LG F  +     +    + ++ + G  +     
Sbjct: 321 RIAGGADFETVAKESSEDNNSKGQGGDLGWFPADAF-GPAFGQQVAAI-QDGGVSQPFRT 378

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             G+ I      + +   +    +  +   +   K  ++     + L
Sbjct: 379 DAGWHILQRVATRQTDVTN-DNQRAQVRETIGRRKLEDEYNRFLQEL 424



 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 55/393 (13%), Positives = 117/393 (29%), Gaps = 51/393 (12%)

Query: 142 AREGINEKEYIDHY---TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
               +  ++ +        +L +  V      G+R S+  L+QA     +    +   L 
Sbjct: 63  RENQLPPEDVLSRQVLERLVLVKLQVARAQGSGIRVSDQELNQAMNSIAQQNGSNLDALR 122

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
            R      D ++             +RA     I+         + +I +S  E+ A  +
Sbjct: 123 QRLAHDGIDFND-------------FRASVRDEITVQRLRQSFAQSRISVSEGEVDAALK 169

Query: 259 KNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQSLKKGK-KFIQLA---EE 302
           +            +  ++               QK+AD     L KG+  F   A    +
Sbjct: 170 QQA---TVGNQYHLAHILVALPDGANADQIATGQKKADGVKALLDKGELDFNAAAVRYSD 226

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
              +L    LG  S + IP  + A  +  + K G+    I G  G+ +  +  ++ +   
Sbjct: 227 SPNALEGGDLGWRSLDEIP-QAFAQMMEKM-KPGEVVGPIRGPSGFQLLKLVEVRDASAT 284

Query: 363 SFQEVKKD-----IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           +      +     I  ++   +     K     L   +A G   + +++     +     
Sbjct: 285 AGASTVTEYHGRHILVRVDDHQTDAAAKAKIDTLRARIAGGADFETVAKESSEDNNSKGQ 344

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
               G        A  P   Q +  +                 G ++  ++       D 
Sbjct: 345 GGDLGWFPAD---AFGPAFGQQVAAI----QDGGVSQPFRTDAGWHILQRVA--TRQTDV 395

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
             +     V++     K  +E +    +L  E 
Sbjct: 396 TNDNQRAQVRETIGRRKLEDEYNRFLQELRGEA 428


>gi|220935878|ref|YP_002514777.1| SurA domain protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997188|gb|ACL73790.1| SurA domain protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 443

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 109/366 (29%), Gaps = 63/366 (17%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V    +  S   N        I  + G  +  +      L  ++L+ L+      Q 
Sbjct: 40  VALVEDDVIMHSELQNRLDTVRQQILSR-GGRLPPDDV----LIPQVLERLIIERLQLQQ 94

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
               G+  D   +   + R      ++N  S   F  RL  +GI+ + + +     ++  
Sbjct: 95  ATRAGIRIDDITLNQTMERI----ARENSMSLPEFRDRLVADGIDFQVFREQIRDEMTIG 150

Query: 163 DV-VGMFVGGMRPSNLLLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFE- 218
            +        ++ S   +D          +R V+Y  L++  VP     + A +    E 
Sbjct: 151 QLRRRQVENRIQVSEQEIDDLIASESGAIDRDVEY-RLSHILVPLPEGANAADIQAARER 209

Query: 219 -----------KYKDNYRAPEY----------------KRISYILFDVHEKEKKIEISND 251
                      +        E                  ++  +        ++ E+S  
Sbjct: 210 AEAIRKRAVAGENFSELALSESAGQQALEGGDLGWRAAAQVPTLFARNVVLMREGEVSEL 269

Query: 252 E-------LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK----GKK 295
                   L    E+   +           ++       +Q++A E    L+     G  
Sbjct: 270 IRSPSGFHLIKLQERRGGERAQITQTHARHILIQPTAILSQEDARERIAGLRNRILMGND 329

Query: 296 FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA     ++G ++    LG      +      + + +LA     +      FG+ I 
Sbjct: 330 FADLARAHSDDRGSAMRGGDLGWTDPGDLV-PQFEEVMNALA-PNTLSEPFLSPFGWHIV 387

Query: 352 HVSNIK 357
            V + +
Sbjct: 388 EVLDRR 393



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             ++ R  +      G+R  ++ L+Q        R      ++                 
Sbjct: 84  RLIIERLQLQQATRAGIRIDDITLNQ-----TMERIARENSMSLPEFRDRLVADGIDFQV 138

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           + E+ +D         ++       + E +I++S  E+                  +  +
Sbjct: 139 FREQIRDE--------MTIGQLRRRQVENRIQVSEQEIDDLIASESGAIDRDVEYRLSHI 190

Query: 276 VFP------------NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYI 320
           + P             ++ A+   +    G+ F +LA  +    ++L    LG  +   +
Sbjct: 191 LVPLPEGANAADIQAARERAEAIRKRAVAGENFSELALSESAGQQALEGGDLGWRAAAQV 250

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITK 379
           P +   + +  L ++G+ + +I    G+ +  +   +        +     I  Q     
Sbjct: 251 PTLFARNVV--LMREGEVSELIRSPSGFHLIKLQERRGGERAQITQTHARHILIQPTAIL 308

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           + E  +E    L   + +G    +++R               G    G  V         
Sbjct: 309 SQEDARERIAGLRNRILMGNDFADLARAHSDDRGSAMRGGDLGWTDPGDLVPQFEEVMNA 368

Query: 440 LF 441
           L 
Sbjct: 369 LA 370


>gi|194099607|ref|YP_002002738.1| putative cis-trans isomerase [Neisseria gonorrhoeae NCCP11945]
 gi|268595616|ref|ZP_06129783.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 35/02]
 gi|293398076|ref|ZP_06642281.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria gonorrhoeae
           F62]
 gi|193934897|gb|ACF30721.1| putative cis-trans isomerase [Neisseria gonorrhoeae NCCP11945]
 gi|268549005|gb|EEZ44423.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 35/02]
 gi|291611339|gb|EFF40409.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria gonorrhoeae
           F62]
 gi|317165096|gb|ADV08637.1| putative cis-trans isomerase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 333

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/367 (11%), Positives = 103/367 (28%), Gaps = 94/367 (25%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                     + +       +  +    + +         +     L +++L  LV+ + 
Sbjct: 56  SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 108

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  +   ++A    +   +A++P                      ++  +  +    +
Sbjct: 109 IVQAGKRRNIQASEAEIDAVVAQNPALKN------------------LSPTQRRELADNI 150

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           ++        +   R S   +D                L       I  P  A L Q+  
Sbjct: 151 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 196

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           ++               +    + +     +   ++  Y++                   
Sbjct: 197 QH---------------ILIKADSKNAAVGAESTIRKIYDQ------------------- 222

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
                       + G  F  LA    +  S      LG F+   +   +  +++ +L K 
Sbjct: 223 -----------ARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 269

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G     +   FG+ I  ++ ++ + T      ++ I N +R     +K  +    L   L
Sbjct: 270 GQVGAPVRTQFGWHIIKLNEVRDAGTP-----EERIRNSVRQYIFQQKAGQATVNLLRDL 324

Query: 396 ALGTSMD 402
             G  +D
Sbjct: 325 HSGAYVD 331


>gi|89892051|gb|ABD78868.1| peptidyl-prolyl cis-trans isomerase [Trypanosoma cruzi]
 gi|322821330|gb|EFZ27686.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Trypanosoma cruzi]
          Length = 124

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLA 326
              V  ++      A EA + + +G  F  +A E  +    S   LG   +  +      
Sbjct: 35  KVKVRHILCEKHGRAMEALKKINEGSSFADVAREYSEDKARSGGDLGWKRRGEMVGP-FQ 93

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++ F+L K G     +  SFGY I  V + +
Sbjct: 94  EAAFALPKGGMTLEPVKTSFGYHIILVEDKQ 124


>gi|298370562|ref|ZP_06981877.1| SurA/PPIASE domain protein [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281172|gb|EFI22662.1| SurA/PPIASE domain protein [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 304

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 77/264 (29%), Gaps = 29/264 (10%)

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
           D  T+      V        + S +  D+ ++          +++           S A 
Sbjct: 36  DVITQREVAQAVAAARSRLPKGSQISNDELRQQVLSQLVNQSLIIQAGK-RKKIQASEAE 94

Query: 213 LTQWFEKYKDNYRAPEYK-------RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
           +     +     +             I           +   +S+ E+     + + +  
Sbjct: 95  IDAVLAQNPTQAKKANKAVRRQIADSIVVEKVRQQAIMQNSRVSDAEVDRFLAQAQRQGI 154

Query: 266 SPE------IRTVEQLVFPNQKE---------ADEAFQSLKKGKKFIQLAEEQGKSLS-- 308
           +            + ++     +           + +   + G  F  LA +  +  S  
Sbjct: 155 TLPAGEPLRQYKAQHILLKADSDNAVSAAESSIRKIYAQARSGTDFSALARQYSQDTSAG 214

Query: 309 -DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
               LG FS   +      D++  L K G  +P +   FG+ I  ++ ++ + T   +  
Sbjct: 215 NGGDLGWFSDGQMV-APFEDAVHKL-KPGQVSPPVRTQFGWHIIKLNEVRDAGTPE-ERQ 271

Query: 368 KKDIANQMRITKASEKVKEDYKRL 391
           +  +   +   KA +      + L
Sbjct: 272 RNAVRQYISNQKAQQATTNLLQEL 295


>gi|288803875|ref|ZP_06409300.1| putative PPIC-type PPIASE domain protein [Prevotella melaninogenica
           D18]
 gi|288333640|gb|EFC72090.1| putative PPIC-type PPIASE domain protein [Prevotella melaninogenica
           D18]
          Length = 488

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 76/198 (38%), Gaps = 33/198 (16%)

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
           +    + + D   + + + +SY     +++ +   I++ +++A  E +K    + +    
Sbjct: 84  VQAALDAHLDTLSSFKKEFLSY----RNQQVRPTFITDADVEA--EGHKLYREAQQQVEA 137

Query: 273 -------EQLVF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
                    ++               ++ AD  + +L+ G  F +LA++    ++    G
Sbjct: 138 NGGMWNCAHILIGLYQNADKEAAEAAKQLADSLYNALRGGADFAELAKKYSTDVNSAMNG 197

Query: 314 S----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
                  K          ++F+L K G+ +  +   FGY I  +   +     +++ ++ 
Sbjct: 198 GQLLHLQKGQTV-PEFEKALFAL-KPGEISAPVLSPFGYHIIKMGGRE--SFPTYETLRP 253

Query: 370 DIANQMRITKASEKVKED 387
           +I   + +    E++ + 
Sbjct: 254 EIMQYIEMQGLREQIIDQ 271


>gi|323493622|ref|ZP_08098743.1| survival protein SurA [Vibrio brasiliensis LMG 20546]
 gi|323312145|gb|EGA65288.1| survival protein SurA [Vibrio brasiliensis LMG 20546]
          Length = 432

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 137/375 (36%), Gaps = 82/375 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            +  V V    V  S    S K  L   ++K G  + SE+     L +++ + L+     
Sbjct: 28  DNIAVIVNSGVVLQSDIDTSLKT-LKANAKKSGQSLPSEQV----LREQVTEKLIVDTIQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG+  D  R+   I        ++N+ + +   + +A+EG++  E+ +   K +
Sbjct: 83  QQEAQRIGVRIDDNRLNEAIEEI----ARNNQQTVEQLSASIAQEGLSYAEFREQVRKEI 138

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFE 218
           + ++     V                    R ++ +     ++  I A  +NA +     
Sbjct: 139 AASEARNALV-------------------RRRINILPAEVDNLANILAKETNATVQ---- 175

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                       +I +I   V++ + K  I                              
Sbjct: 176 -----------YKIGHIQLRVNDGDDKSAI------------------------------ 194

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            +K+A +  + LK+G  F  +A    K   +L     G   KE +P    AD I +L  K
Sbjct: 195 -EKQAQQLVEKLKEGADFSTMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-NLQNK 251

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEF 394
           G          G+ I  + ++K   TV+  EV    I  +  +  + E V++D K + + 
Sbjct: 252 GSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGVQKDLKEITQR 311

Query: 395 LALG-TSMDEISRRE 408
           +  G  +  E++++ 
Sbjct: 312 IKSGKATFAEMAQQY 326


>gi|317046868|ref|YP_004114516.1| SurA domain-containing protein [Pantoea sp. At-9b]
 gi|316948485|gb|ADU67960.1| SurA domain protein [Pantoea sp. At-9b]
          Length = 431

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/370 (12%), Positives = 109/370 (29%), Gaps = 62/370 (16%)

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
               L  +IL+  +  + + Q  E  GL+    ++   I          N  + D   SR
Sbjct: 62  DDNTLRHQILERQIMDSIVLQMGEKAGLQISDQQLDEAIQNIAG----QNHMTLDQLRSR 117

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENRSVDYIVLN 198
           +A +GIN  EY     K +  ++V        +      +D   +    +N     + ++
Sbjct: 118 IAYDGINYNEYRAQIRKEMMISEVRNNEVRRRVTILPQEVDTLAKQIGSQNTQGTELNVS 177

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-------- 250
              +P   +P+   +    E           K   +    V        +          
Sbjct: 178 QILLPLPENPTQQQVDDQ-EALARQLVGELKKGADFGKLAVTYSADPQALKGGNMGWSKI 236

Query: 251 DELQAEYEKNKEKYFSPE-----------------------------IRTVEQLVFP--- 278
           +EL + + +        +                                   ++     
Sbjct: 237 EELPSLFSQALATAQKGDVVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSP 296

Query: 279 ------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADS 328
                  + + +E    ++ GK  F   A++        + G    ++   + D +  D+
Sbjct: 297 ILTDDQARAKLEEIAADIRSGKITFAAAAKQYSDDPGSANQGGDLGWTSPEVFDPAFRDA 356

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           +  L +KG  +  +H SFG+ +  + + +                  R+    +  +E  
Sbjct: 357 LMRL-QKGQTSQPVHSSFGWHLIQLLDTRQVDKTD----AAQKERAYRLLFNRKFAEEAQ 411

Query: 389 KRLEEFLALG 398
             ++E  A  
Sbjct: 412 TWMQEQRASA 421



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 102/319 (31%), Gaps = 50/319 (15%)

Query: 153 DHYTKMLSRTDVVGMFV------GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
           +     +    ++   V       G++ S+  LD+A +                ++    
Sbjct: 64  NTLRHQILERQIMDSIVLQMGEKAGLQISDQQLDEAIQ----------------NIAGQN 107

Query: 207 DPSNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
             +   L     +     + YRA   K +       +E  +++ I   E+    ++   +
Sbjct: 108 HMTLDQLRSRIAYDGINYNEYRAQIRKEMMISEVRNNEVRRRVTILPQEVDTLAKQIGSQ 167

Query: 264 YFSPEIRTVEQLVFP------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
                   V Q++ P             +  A +    LKKG  F +LA         + 
Sbjct: 168 NTQGTELNVSQILLPLPENPTQQQVDDQEALARQLVGELKKGADFGKLAVTYSADPQALK 227

Query: 312 LGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKK 369
            G+     I +  SL     + A+KGD    I    G+ I  V++++  S  +S  EV  
Sbjct: 228 GGNMGWSKIEELPSLFSQALATAQKGDVVGPIRSGVGFHILKVNDLRGESKNISVTEVHA 287

Query: 370 -----DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
                  +  +   +A  K++E      +  +   +    +++    S D    +  G  
Sbjct: 288 RHILLKPSPILTDDQARAKLEEIA---ADIRSGKITFAAAAKQY---SDDPGSANQGGDL 341

Query: 425 VKGKEVAAIPYKEQLLFRV 443
                    P     L R+
Sbjct: 342 GWTSPEVFDPAFRDALMRL 360


>gi|223936140|ref|ZP_03628054.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
 gi|223895362|gb|EEF61809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
          Length = 350

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 95/294 (32%), Gaps = 33/294 (11%)

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
            +V   + R   F     + +   +   L    +  K   +   + L   D       G 
Sbjct: 71  QQVELLVGRDADFIRHQYQNNPQEYQ--LRMVDLMGKGLTNLIQRELVLHDFQN---SGF 125

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
                ++D+  +   + +  D + L  +                     + ++      +
Sbjct: 126 NVPETIIDEIVQDRIKEKYSDRVQLTKQLQKEGLTF-------------EQFKKQIRDDL 172

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEA 283
            Y         + I +S  +++  Y++++  +   +      +V            +K A
Sbjct: 173 IYREMYRKNVPETI-MSPHKIETFYQEHQADFKVADEIKTRIIVLNKPADDTEGSTKKRA 231

Query: 284 DEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
            E    LK G  F ++A    E          G      +    +A+++  L K G++T 
Sbjct: 232 QEIISQLKNGAAFSEMASVYSEGSTRAQGGDAGWQETSVVLKP-IAEAVSKL-KSGEYTD 289

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           VI       +  + + +P+     ++V+ DI   +   +     ++   R+E+ 
Sbjct: 290 VIETPTACFLVLLEDRRPAHVKPLRDVQDDIERTLTAQENFRLYRKWIDRIEKK 343


>gi|59802035|ref|YP_208747.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA 1090]
 gi|59718930|gb|AAW90335.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA 1090]
          Length = 333

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 71/221 (32%), Gaps = 31/221 (14%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     +       +P  +R     I           +   +S  E+ A  E+
Sbjct: 118 IQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 177

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     +             +   + G  F  LA    
Sbjct: 178 AQKQGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIYDQARNGTDFAGLARRYS 237

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 238 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 295

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
                 ++ I N +R     +K  +    L   L  G  +D
Sbjct: 296 P-----EERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVD 331


>gi|289663554|ref|ZP_06485135.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 463

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/432 (10%), Positives = 114/432 (26%), Gaps = 72/432 (16%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +   +L +   I  L+ A  S         V    V  S    + +      + +   + 
Sbjct: 8   VLASLLAITSTISPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLP 67

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
             +      L +++L+ L+         +  G+      +   IA       + N  + D
Sbjct: 68  PDDV-----LQRQVLERLILVKLQVGRADGSGIRVSDEELNRAIASI----AQQNGTTVD 118

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDY 194
               +LA +G+   ++       +    +   F    +  S   +D       +  +   
Sbjct: 119 GLRQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVD--TALAQQAATGSQ 176

Query: 195 IVLNNRHVPAIADPSNAVL----------TQWFEKYKDNYRAPEYK-----------RIS 233
             L +  +      +   +              +K + ++ A   +            + 
Sbjct: 177 YHLAHILIGLPEGATAEQIATGQKKVDGVKALIDKGELDFPAAAVRYSDSPNALEGGDLG 236

Query: 234 YILFDVHEKEKKIEISN---------------------DELQAEYEKNKEKYFSPEIRTV 272
           +   D         I +                      E++      ++K  +      
Sbjct: 237 WRSLDEIPNAFAQLIRDMKPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKMVT--EYNA 294

Query: 273 EQLVF---------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEY 319
             ++            + + D     +  G  F   A+E  +  +       LG F  + 
Sbjct: 295 RHILVRVGDNQTEAQAKAKIDTIRARIVGGADFQATAKESSEDTNSRGQGGDLGWFPADA 354

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
                    +  LA  G  +       G+ I      + +   S +  +  +   +   K
Sbjct: 355 F-GPDFGKQVEGLA-DGAVSEPFRTQAGWHIVQRVGSRQTDV-SAENQRAQVRETIGRRK 411

Query: 380 ASEKVKEDYKRL 391
             E+     + L
Sbjct: 412 LEEEYNRYLQEL 423


>gi|146281741|ref|YP_001171894.1| NifM protein, putative a peptidyl-prolyl cis/trans isomerase
           [Pseudomonas stutzeri A1501]
 gi|145569946|gb|ABP79052.1| NifM protein, putative a peptidyl-prolyl cis/trans isomerase
           [Pseudomonas stutzeri A1501]
          Length = 292

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 88/244 (36%), Gaps = 35/244 (14%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN------AVLTQWFEK---- 219
                S+   +QA+R       ++  VL++     +  P        A +   +E     
Sbjct: 26  APAALSSQQREQAERIIGRQLQLENAVLHSAEACGVVIPDEQVADAWAEIAARYEDPLAL 85

Query: 220 YKDN---------YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
           +K            R    + +              EI++ ++   Y  + E++  P  R
Sbjct: 86  HKALDDSGLDEAGLRQLLARELKVETVLQRVCAGLPEITDTDVSLYYFNHPERFVRPATR 145

Query: 271 TVEQLVFPNQKEADE-------------AFQSLKKGKKFIQLAEEQGKSLSDISLGSFS- 316
              Q++    ++  E             A + L+K ++F + A +  +  S +  GS   
Sbjct: 146 LARQILITVNEDFPENSRTSAWRRINLIAERLLRKPQRFAEQALKHSECPSAMEGGSLGL 205

Query: 317 -KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            +  +    L   +F+L + G+  PV+    G+ +     I P+  +S QEV   +  ++
Sbjct: 206 IRPGVLYPQLEACLFAL-RAGEIGPVVETPLGFHLLFCEEIHPAGHLSLQEVLPHLREKL 264

Query: 376 RITK 379
           R  +
Sbjct: 265 RARQ 268


>gi|325121999|gb|ADY81522.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 436

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/405 (11%), Positives = 123/405 (30%), Gaps = 69/405 (17%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           F+      V  V    +  S       +    +  +       E      L  ++LD L+
Sbjct: 26  FAQPADEVVAIVDNSVILKSDLQQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 80

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153
                 + ++  G++ D   +   + +     G+    S + F  +L    +    Y   
Sbjct: 81  LREAQLEQVKKYGIKPDEKSLNEAVLKVA---GQSGSKSLEAFQQKLDA--MAPGTYESL 135

Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204
                + L+ + +     +  ++ S+  ++      Q +        V ++ ++  +   
Sbjct: 136 RGRIAEDLAISRLRQQQVMSRIKISDQDVENFLKSPQGQAALGNQAHVIHMRISGDNAQE 195

Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242
           +   +  V ++  +    N                  +R     P             + 
Sbjct: 196 VQSVAKEVRSKLAQSNDINALKKLSTANVKVEGADMGFRPLSDIPTELAARITPLQDGQT 255

Query: 243 EKKIEISN-----DELQAEYEKNKEKYFSPEIRTVEQL------VFPNQKEADEAFQSLK 291
              + + +       L+ +  + K      + R +         +   ++  D  ++ LK
Sbjct: 256 TDLVSVRDGVHVLKLLERKQNEQKALVPQFQTRHILIQPSEVVTLENAKQIIDNIYKRLK 315

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA     + G +    SLG  +   +        +  +   G+ +      FG
Sbjct: 316 AGQDFATLAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFG 373

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + I  V++ +           KD+ ++ +   A + + E     E
Sbjct: 374 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 408



 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 85/288 (29%), Gaps = 43/288 (14%)

Query: 143 REGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           ++G+ E   E      ++  +  +    +  +      L+Q K++       D   LN  
Sbjct: 48  QQGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILREAQLEQVKKYGI---KPDEKSLNEA 104

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKR---------ISYILFDVHEKEKKIEISND 251
            +       +  L  +  + K +  AP             ++       +   +I+IS+ 
Sbjct: 105 VLKVAGQSGSKSLEAF--QQKLDAMAPGTYESLRGRIAEDLAISRLRQQQVMSRIKISDQ 162

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           +++   +  + +        V  +          Q  A E    L +      L ++   
Sbjct: 163 DVENFLKSPQGQAALGNQAHVIHMRISGDNAQEVQSVAKEVRSKLAQSNDINAL-KKLST 221

Query: 306 SLSDISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN--------- 355
           +   +         + D+    +   +  + G  T ++    G  +  +           
Sbjct: 222 ANVKVEGADMGFRPLSDIPTELAARITPLQDGQTTDLVSVRDGVHVLKLLERKQNEQKAL 281

Query: 356 ----------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                     I+PS  V+ +  K+ I N  +  KA +           
Sbjct: 282 VPQFQTRHILIQPSEVVTLENAKQIIDNIYKRLKAGQDFATLAATYSN 329


>gi|261378504|ref|ZP_05983077.1| SurA/PPIASE domain protein [Neisseria cinerea ATCC 14685]
 gi|269145052|gb|EEZ71470.1| SurA/PPIASE domain protein [Neisseria cinerea ATCC 14685]
          Length = 331

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 82/262 (31%), Gaps = 30/262 (11%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213
           ++++R  +              +  +     E   +  +   ++             A +
Sbjct: 64  EVITRRRLAQAVADAKANLPKGVQISDTALTEQVLMQLVNQSLIVQAGKRRNIQAGEAEI 123

Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS- 266
                +       + E +R     I           +   +S  E+    E+ +++  + 
Sbjct: 124 AAVVAQNPSLKNLSAEQRRELADSIIAEKVRQQAVMQNSRVSEAEVDRFIEQAQKQGVTL 183

Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309
           PE         + ++     E             +   + G  F  LA +  +  S    
Sbjct: 184 PEGEPMRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNG 243

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG F+   +   +  +++ SL K G  +  +   FG+ I  ++ ++ + T   + V+ 
Sbjct: 244 GDLGWFADGVMV-PAFEETVRSL-KPGQVSAPVRTQFGWHIIKLNEVREAGTPQ-ERVRN 300

Query: 370 DIANQMRITKASEKVKEDYKRL 391
            +   +   KA     +  + L
Sbjct: 301 AVRQYIFQQKAERATADLLRDL 322


>gi|239999806|ref|ZP_04719730.1| putative cis-trans isomerase [Neisseria gonorrhoeae 35/02]
 gi|240014962|ref|ZP_04721875.1| putative cis-trans isomerase [Neisseria gonorrhoeae DGI18]
 gi|240017410|ref|ZP_04723950.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA6140]
 gi|240116565|ref|ZP_04730627.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID18]
 gi|240122031|ref|ZP_04734993.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID24-1]
          Length = 332

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/367 (11%), Positives = 103/367 (28%), Gaps = 94/367 (25%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                     + +       +  +    + +         +     L +++L  LV+ + 
Sbjct: 55  SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 107

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  +   ++A    +   +A++P                      ++  +  +    +
Sbjct: 108 IVQAGKRRNIQASEAEIDAVVAQNPALKN------------------LSPTQRRELADNI 149

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           ++        +   R S   +D                L       I  P  A L Q+  
Sbjct: 150 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 195

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           ++               +    + +     +   ++  Y++                   
Sbjct: 196 QH---------------ILIKADSKNAAVGAESTIRKIYDQ------------------- 221

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
                       + G  F  LA    +  S      LG F+   +   +  +++ +L K 
Sbjct: 222 -----------ARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 268

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G     +   FG+ I  ++ ++ + T      ++ I N +R     +K  +    L   L
Sbjct: 269 GQVGAPVRTQFGWHIIKLNEVRDAGTP-----EERIRNSVRQYIFQQKAGQATVNLLRDL 323

Query: 396 ALGTSMD 402
             G  +D
Sbjct: 324 HSGAYVD 330


>gi|90411942|ref|ZP_01219950.1| putative survival protein SurA [Photobacterium profundum 3TCK]
 gi|90327200|gb|EAS43572.1| putative survival protein SurA [Photobacterium profundum 3TCK]
          Length = 434

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 78/492 (15%), Positives = 145/492 (29%), Gaps = 97/492 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S      +      +++     N     +  L +++++ L+     
Sbjct: 28  DKVVTLVNDSVILQSDVNAMLQTVRINAAEQ-----NQPLPDNALLTEQVMEKLIIETLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+  D  R+   +A       K+ + +       L + GI+   + +   + +
Sbjct: 83  LQQAEQFGIRIDDTRLDQAVAEI----AKERELTIPQLQQELEKSGISYSIFREQMRRDM 138

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +                           E R++  +      +P   D     L      
Sbjct: 139 T-------------------------ASEARTIQ-VRRRINILPQEVDMLAEQL------ 166

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            K   +      IS+I   V E   K++                                
Sbjct: 167 NKQTLQTV-QFNISHIQLRVEEGATKVQREE----------------------------T 197

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           Q++A +    LK G  F  LA       K+L     G   +E +P    AD I S   KG
Sbjct: 198 QQQAQQLVDELKNGADFANLAYSYSKGPKALQGGEWGWMRQEEMP-TIFADQIKS-NGKG 255

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKRL 391
                     GY I  V+++K   TVS  EV      I     +    A  ++++     
Sbjct: 256 AIIGPFRSGVGYHIIKVNDVKGLETVSVTEVNARHILIKTSVILSDDGAKRQLEKAR--- 312

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
           ++ LA   +    +   + +S D       G+         +P  +  +  +     P  
Sbjct: 313 QDILAGRQTF---ADEAQKLSSDPGSAANGGELGWQTPDLYVPEFKDKVETL-----PKG 364

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
                      +  V++ E     DR    V     +   + K  EE  +   +L     
Sbjct: 365 TISEPFKTVHGWHIVEVLERRNV-DRTDAAVKNRAYRILFSRKFNEEAQAWLQEL----- 418

Query: 512 KEGKNFRDIGKN 523
           + G     +G N
Sbjct: 419 RAGAYIEQLGTN 430


>gi|291042915|ref|ZP_06568656.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae DGI2]
 gi|291013349|gb|EFE05315.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae DGI2]
          Length = 333

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/367 (11%), Positives = 103/367 (28%), Gaps = 94/367 (25%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                     + +       +  +    + +         +     L +++L  LV+ + 
Sbjct: 56  SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 108

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  +   ++A    +   +A++P                      ++  +  +    +
Sbjct: 109 IVQAGKRRNIQASEAEIDAVVAQNPALKN------------------LSPTQRRELADNI 150

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           ++        +   R S   +D                L       I  P  A L Q+  
Sbjct: 151 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 196

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           ++               +    + E     +   ++  Y++                   
Sbjct: 197 QH---------------ILIKADSENAAVGAESTIRKIYDQ------------------- 222

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
                       + G  F  LA    +  S      LG F+   +   +  +++ +L K 
Sbjct: 223 -----------ARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 269

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G     +   FG+ I  ++ ++ + T      ++ I N +R     +K  +    L   L
Sbjct: 270 GQVGAPVRTQFGWHIIKLNEVRDAGTP-----EERIRNSVRQYIFQQKAGQATVNLLRDL 324

Query: 396 ALGTSMD 402
             G  +D
Sbjct: 325 HSGAYVD 331


>gi|169335547|ref|ZP_02862740.1| hypothetical protein ANASTE_01962 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258285|gb|EDS72251.1| hypothetical protein ANASTE_01962 [Anaerofustis stercorihominis DSM
           17244]
          Length = 504

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 75/174 (43%), Gaps = 8/174 (4%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLA---EE 302
           + +  + + E+ KN + Y      + + ++  ++  A E ++   +KG  F Q+    ++
Sbjct: 321 KPTEKDAEKEFNKNTKAYDKS-TVSAKHILTSDKSLAKEIYEQATQKGADFDQIMSKYQK 379

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                    LG+F+   + +   + + F  A+KG     +   +GY + +V + K +   
Sbjct: 380 NSAVQEASDLGAFTYPSMVE-DFSKAAFD-AEKGSVVGPVKTEYGYHVIYVYD-KNTVEP 436

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
            F++ K  I +++      E V +  + +++       +++I     ++  +L 
Sbjct: 437 KFEDSKDTILSKLDSQNKLEAVNKLDEDIKDKHNGKVEIEDIDEPYNMLLAELK 490



 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 16/152 (10%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVS-GSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           + KI  + + V  L      ++      +  V  VG  ++P  +        L       
Sbjct: 4   IKKIIGIAMAVTLLFSAFGCSVNEEKLANKAVAKVGDTEIPKMNLDAVVGFTLVSYYANS 63

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE-------IARSPL 124
           G  ++ E +    L +++ +NLV    + +  +D G   +   V          I  S  
Sbjct: 64  GTEISMEDSSVSSLKEEVANNLVEYELVKKAAKDYGYTKNDKEVKEAAKETLKSIKSSSY 123

Query: 125 FHGKDNKFSHDVFVSRLAREGI-NEKEYIDHY 155
             G       D + S L + G  +EK + +  
Sbjct: 124 LKG-------DKYKSVLKQYGFEDEKSFENAV 148


>gi|52840553|ref|YP_094352.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52627664|gb|AAU26405.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 446

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 69/468 (14%), Positives = 140/468 (29%), Gaps = 90/468 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S      +     I  +     N +      L K++L +L+     
Sbjct: 42  DKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQMPDESVLRKQVLQHLIDVDLE 96

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G+  ++  +   I +        N  +       + ++GI+ +EY     + +
Sbjct: 97  MQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRDEITKQGISWQEY----RQNI 148

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            +  ++                               +  + V      +N  + Q+ + 
Sbjct: 149 RKEMLIS-----------------------------RVQQKAVGKDIIVTNEQVEQYLKT 179

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      RI       H K   I +S +               P  + +++     
Sbjct: 180 ---------SGRIENSNLTYHLKNIVIPLSEE---------------PTTKQLQR----A 211

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           + EA+     +KKG+ F +LA E+     +L    LG      +P+V  A  +  + K G
Sbjct: 212 KIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEV-FAKEVVHM-KVG 269

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD--IANQMRITKASEKVKEDYKRLEEF 394
                I    G+ +  +  +          V     + + +    AS    E  K++   
Sbjct: 270 QVAGPIRAGNGFHLIKLVAVGGENQR---HVITQTHVRHILLKPDASMVPSEAIKQVNNI 326

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
                S  + +   K  S+D       G          +P  E+ +  +          H
Sbjct: 327 YRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSL--------PLH 378

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEV--LTDVKKDWKTVKTAEEVS 500
            V+ P  +     + E I  R +   E      V++  +  K  E V 
Sbjct: 379 KVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQ 426


>gi|1213605|emb|CAA65154.1| orf1 [Campylobacter jejuni]
          Length = 281

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 100/278 (35%), Gaps = 26/278 (9%)

Query: 234 YILFDVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           Y +          +I + EL+  Y  ++NK KY     + ++     N+   D A   LK
Sbjct: 12  YEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLK 71

Query: 292 --KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
                KF+ L   +     D ++         DV     + + AK GD       + GY+
Sbjct: 72  NVANAKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYI 125

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           I  ++ + P    +F+E ++++       +A + ++E  K        G  +  +SR   
Sbjct: 126 IVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSS 184

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
             S+ +             ++         L  VF  D        V + D   +  +I 
Sbjct: 185 RESVKV-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVVINDNKAILYKIN 230

Query: 470 ESI-PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
           +        K E+  T ++++ + +K  E      ++L
Sbjct: 231 KQKLDMNSDKFEQYKTMLEQNLQNLKANELKQELVDEL 268



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 97/262 (37%), Gaps = 19/262 (7%)

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
              ++      N+++    + KV + ++  +  +A   ++ ++        +DL      
Sbjct: 29  KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 87

Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
            +  +    + + Y   LL +    D      +     +  Y+ V++ +  P R++  EE
Sbjct: 88  FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 142

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
              +V   + + +  + +  KA   ++ +  +G +   + ++     +  +     D+E 
Sbjct: 143 AREEVLPMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEF 200

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596
            +F  +    VF+        + + N    +++K+   K+        Q K      L  
Sbjct: 201 AYFLMN----VFNTDQNS--SYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQN 254

Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618
           +   +L   ++  LK  Y + +
Sbjct: 255 LKANELKQELVDELKKIYPIKI 276


>gi|315644393|ref|ZP_07897533.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
           V453]
 gi|315280270|gb|EFU43562.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
           V453]
          Length = 311

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 99/272 (36%), Gaps = 22/272 (8%)

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
           + +    I E E++D   K   R  ++ M             QA     + + +D     
Sbjct: 48  ASIQDRAITEDEWVDELKKRYGREMLMTMLN----------RQAVALEAKAKGIDITTAE 97

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPE---YKRISYILFDVHEKEKKIEISNDELQA 255
                 +   S     ++  + ++     E       +Y +         + I   ++ A
Sbjct: 98  VDAEIDVMSRSYGSKERFLSEMENQLGITEAELRMETTYRMLLEKIATSDVYIEPQQIDA 157

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDIS 311
             E   +++   +   +  +   ++ EA++A   L+ G+ F  LA E             
Sbjct: 158 YLELYPDQFRPKKQLNLSMIEVASEDEANQAMDRLENGEDFAALASEISLDEYTREEGGQ 217

Query: 312 LGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
           +G   ++      +L D+   L + GD    I  +  Y I ++ +I      S  ++++ 
Sbjct: 218 IGLIEEDDPFLPPALLDAALEL-EPGDIAGPISLTDTYAIVYLHDIIEPKAPSEDKIREA 276

Query: 371 IANQMRITKA---SEKVKEDYKRLEEFLALGT 399
           +  Q+ + ++   SE  ++  ++ E  ++ GT
Sbjct: 277 VRKQLALEQSISLSELERQLREKYEARISAGT 308


>gi|313105527|ref|ZP_07791795.1| putative peptidyl-prolyl cis-trans isomerase, PpiC [Pseudomonas
           aeruginosa 39016]
 gi|310878297|gb|EFQ36891.1| putative peptidyl-prolyl cis-trans isomerase, PpiC [Pseudomonas
           aeruginosa 39016]
          Length = 247

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299
           S+ ELQA Y+ NK +   P +  V Q+         +   +K A E ++    G  F +L
Sbjct: 73  SDAELQAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELYRQAADG-DFAEL 131

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A +          G      +    L  +        K G  +  I G+ G+ +  ++  
Sbjct: 132 ARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 191

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +   +  EV+  +   +R  +  +  K     L
Sbjct: 192 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 226


>gi|288929625|ref|ZP_06423469.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288329130|gb|EFC67717.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 474

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 27/192 (14%)

Query: 250 NDELQAEYEKNKEKYFSPE--IRTVEQLVFPNQKEA-----------DEAFQSLKKGKKF 296
           +   +  Y+  K++       IR    ++   QK A           D  + +LK+G  F
Sbjct: 107 DKAARQLYDDTKQRIEGQGGLIRVAHIMLLLPQKSAKDLQRRAEQRIDSIYNALKRGADF 166

Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LA     ++G +     L    K         D+ F+L K G+ +  +    GY I  
Sbjct: 167 AALARKLSDDKGSAQQGGELPWLQKGQTLK-EFEDAAFAL-KPGEISKPLLSPAGYHIIK 224

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG----TSMDEISRRE 408
           +   +    + +  VK DI   +  T   E++ +   +L E         T+ D +  R 
Sbjct: 225 MIERR--SFLPYDSVKADIFAYIEQTNMREQIID--NKLNELAKASPTPRTTADVLEERA 280

Query: 409 KIVSIDLPLVDF 420
           + +    P + F
Sbjct: 281 QAMQAKDPALRF 292


>gi|254785700|ref|YP_003073129.1| nitrogen fixation protein NifM [Teredinibacter turnerae T7901]
 gi|237686104|gb|ACR13368.1| nitrogen fixation protein NifM [Teredinibacter turnerae T7901]
          Length = 293

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 90/246 (36%), Gaps = 35/246 (14%)

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSN------AVLTQWFEKYKDNYRAPEYKRIS 233
           D A R       ++  VL++     ++ PSN        +   +E+  D Y   +   + 
Sbjct: 32  DDALRIAQRKIRIEEAVLSSSAAAKVSVPSNQIDEALDQIRGRYEEESDFYTDIQRVGVD 91

Query: 234 ----YILFDVHEKEKKI---------EISNDELQAEYEKNKEKYFSPEIRTVEQLVF--- 277
               Y         + I          ++  E+   Y  N  K+  PE+RT   ++    
Sbjct: 92  ETFFYQALSRELHVEAILDFISSDCDGVTETEISLYYYMNVAKFQMPEVRTARHILVTIN 151

Query: 278 ---------PNQKEADEAFQSL-KKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSL 325
                     + K+ ++    L KK  +F + A +  +  + +  G   K    +    +
Sbjct: 152 EDNVENSRANSLKKINQIVSRLDKKPDRFAEQALKHSECPTSLQGGLMGKVKRGVLYPEI 211

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
             ++F+L K G+ + V+    G+ I     I+   T+  Q+V   +   +   K  ++ +
Sbjct: 212 EQALFAL-KVGELSEVVESPLGFHIVLCEEIQQEGTLPLQDVYPRLEEFLLNRKRKQRQR 270

Query: 386 EDYKRL 391
           +  + +
Sbjct: 271 QWLESI 276


>gi|291556857|emb|CBL33974.1| PPIC-type PPIASE domain [Eubacterium siraeum V10Sc8a]
          Length = 472

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 117/327 (35%), Gaps = 17/327 (5%)

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR--SPLFHGKDNKFSHDVFV 138
            +    K I+D L +   + +  +++GL+        E+ +  +         F      
Sbjct: 95  YAQSYRKNIIDMLTNEKLILRKAKELGLDQLTEEEMAEVEKAYTKNLSDWYASFEKKAKT 154

Query: 139 SR-LAREGINEKEYIDHYTKMLSRTD-VVGMFVGGM-RPSNLLLDQAKRFYFENRSVDY- 194
           +  ++ +G +  E   +  K+L +   +   ++ G     +  L        + +  DY 
Sbjct: 155 ALGISTDGTSGTEDSANDEKILEKEKELFNEYIAGFGLTEDTFLMWQTNTAIQKKVNDYL 214

Query: 195 ---IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV---HEKEKKIEI 248
              I +++  +        A   Q +EK   +Y      +  +I  D          I  
Sbjct: 215 LKDITVSDSEIDDYITKLKAEAKQAYEKSASSYATDSEYKKVWIPEDARYIKYIAVGIAS 274

Query: 249 SN-DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           S+  E+ A   ++       + +  E+L    +K      ++   G  F  + +E   + 
Sbjct: 275 SDYAEINAARNESGADDAEIDKKRDEKLAEIKEKADAALKKATADGADFDAVVKEYSSAY 334

Query: 308 SDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           S+ + G      + + +   +L D++F+L K GD + +I    GY I    +        
Sbjct: 335 SESTAGEQILVLNSKGLISDALYDAVFALEKPGDISGLIPTDSGYYIVKYVSDAKVTDSD 394

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
               +K +  ++  ++ SEK     + 
Sbjct: 395 LSNYRKTVRQELLTSRQSEKTNAILEE 421


>gi|293608269|ref|ZP_06690572.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828842|gb|EFF87204.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 441

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/405 (11%), Positives = 122/405 (30%), Gaps = 69/405 (17%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           F+      V  V    +  S       +    +  +       E      L  ++LD L+
Sbjct: 31  FAQPADEVVAIVDNSVILKSDLQQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 85

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-- 152
                 + ++  G++ D   +   + +      +    S + F  +L    +    Y   
Sbjct: 86  LREAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--MAPGTYESL 140

Query: 153 -DHYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204
            +   + L+ + +     +  ++ S+  ++      Q +        V ++ ++  +   
Sbjct: 141 RNRIAEDLAISRLRQQQVMSRIKISDQDVENFLKSPQGQAALGNQAHVIHMRISGDNAQE 200

Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242
           +   +  V ++  +    N                  +R     P             + 
Sbjct: 201 VQSVAQEVRSKLAQSNDINALKKLSTANVKVEGADMGFRPLSDIPAELAARITPLQDGQT 260

Query: 243 EKKIEISN-----DELQAEYEKNKEKYFSPEIRTVEQL------VFPNQKEADEAFQSLK 291
              + + +       L+ +  + K      + R +         +   ++  D  ++ LK
Sbjct: 261 TDLVSVRDGVHVLKLLERKQNEQKALVPQFQTRHILIQPSEVVTLENAKQIIDNIYKRLK 320

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA     + G +    SLG  +   +      D        G+ +      FG
Sbjct: 321 AGQDFATLAATYSNDTGSARDGGSLGWVTPGMMV--PEFDKQMQEIPVGEISEPFQTQFG 378

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + I  V++ +           KD+ ++ +   A + + E     E
Sbjct: 379 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 413



 Score = 45.0 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 86/286 (30%), Gaps = 39/286 (13%)

Query: 143 REGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           ++G+ E   E      ++  +  +    +  +      L+Q K++       D   LN  
Sbjct: 53  QQGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILREAQLEQVKKYGI---KPDEKSLNEA 109

Query: 201 HVPAIADPSNAVLTQWFEK----YKDNYRAPEYK---RISYILFDVHEKEKKIEISNDEL 253
            +   +   +  L  + +K        Y +   +    ++       +   +I+IS+ ++
Sbjct: 110 VLKVASQSGSKSLEAFQQKLDAMAPGTYESLRNRIAEDLAISRLRQQQVMSRIKISDQDV 169

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           +   +  + +        V  +          Q  A E    L +      L ++   + 
Sbjct: 170 ENFLKSPQGQAALGNQAHVIHMRISGDNAQEVQSVAQEVRSKLAQSNDINAL-KKLSTAN 228

Query: 308 SDISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN----------- 355
             +         + D+    +   +  + G  T ++    G  +  +             
Sbjct: 229 VKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLVSVRDGVHVLKLLERKQNEQKALVP 288

Query: 356 --------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                   I+PS  V+ +  K+ I N  +  KA +           
Sbjct: 289 QFQTRHILIQPSEVVTLENAKQIIDNIYKRLKAGQDFATLAATYSN 334


>gi|126641590|ref|YP_001084574.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC
           17978]
          Length = 414

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/405 (12%), Positives = 121/405 (29%), Gaps = 69/405 (17%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           F+      V  V    +  S       +    +  +       E      L  ++LD L+
Sbjct: 4   FAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 58

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153
                 + ++  G++ D   +   + +      +    S + F  +L    I    Y + 
Sbjct: 59  LRQAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--IAPGTYENL 113

Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204
                + L+   +     +  ++ S+  +D      Q +        V ++ ++  +   
Sbjct: 114 RSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQE 173

Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242
           + + +  V +Q  +    N                  +R     P             + 
Sbjct: 174 VQNVAKEVRSQLAQSNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQT 233

Query: 243 EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
              I + +    L+    K  E+           ++            ++  D  ++ LK
Sbjct: 234 TDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLK 293

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA     + G +    SLG  +   +        +  +   G+ +      FG
Sbjct: 294 AGEDFATLAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFG 351

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + I  V++ +           KD+ ++ +   A + + E     E
Sbjct: 352 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 386



 Score = 40.4 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 39/285 (13%)

Query: 144 EGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
           +G+ E   E      ++  +  +    +  +      L+Q K++       D   LN   
Sbjct: 27  QGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILRQAQLEQVKKYGI---KPDEKSLNEAV 83

Query: 202 VPAIADPSNAVLTQWFEK-------YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
           +   +   +  L  + +K         +N R+   + ++       +   +I+IS+ ++ 
Sbjct: 84  LKVASQSGSKSLEAFQQKLDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVD 143

Query: 255 AEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
              +  + +        V  +          Q  A E    L +      L ++   +  
Sbjct: 144 NFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQSNDLNAL-KKLSTATV 202

Query: 309 DISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN------------ 355
            +         + D+    +   +  + G  T +I    G  +  +              
Sbjct: 203 KVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQ 262

Query: 356 -------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                  I+PS  VS +  K+ I +  +  KA E           
Sbjct: 263 YQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 307


>gi|240113831|ref|ZP_04728321.1| putative cis-trans isomerase [Neisseria gonorrhoeae MS11]
 gi|240118789|ref|ZP_04732851.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID1]
 gi|240126540|ref|ZP_04739426.1| putative cis-trans isomerase [Neisseria gonorrhoeae SK-92-679]
 gi|240129002|ref|ZP_04741663.1| putative cis-trans isomerase [Neisseria gonorrhoeae SK-93-1035]
 gi|260439674|ref|ZP_05793490.1| putative cis-trans isomerase [Neisseria gonorrhoeae DGI2]
          Length = 332

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/367 (11%), Positives = 103/367 (28%), Gaps = 94/367 (25%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                     + +       +  +    + +         +     L +++L  LV+ + 
Sbjct: 55  SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 107

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  +   ++A    +   +A++P                      ++  +  +    +
Sbjct: 108 IVQAGKRRNIQASEAEIDAVVAQNPALKN------------------LSPTQRRELADNI 149

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           ++        +   R S   +D                L       I  P  A L Q+  
Sbjct: 150 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 195

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           ++               +    + E     +   ++  Y++                   
Sbjct: 196 QH---------------ILIKADSENAAVGAESTIRKIYDQ------------------- 221

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
                       + G  F  LA    +  S      LG F+   +   +  +++ +L K 
Sbjct: 222 -----------ARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 268

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G     +   FG+ I  ++ ++ + T      ++ I N +R     +K  +    L   L
Sbjct: 269 GQVGAPVRTQFGWHIIKLNEVRDAGTP-----EERIRNSVRQYIFQQKAGQATVNLLRDL 323

Query: 396 ALGTSMD 402
             G  +D
Sbjct: 324 HSGAYVD 330


>gi|120613390|ref|YP_973068.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
 gi|120591854|gb|ABM35294.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
          Length = 476

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/403 (10%), Positives = 110/403 (27%), Gaps = 66/403 (16%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +  +       +    ++ + G            + +++L+ L++     Q 
Sbjct: 73  VAVVNTEPITNNEVQARVARVEHQLAAQGGERPPRRV-----IAREVLERLINEKIQVQM 127

Query: 103 IEDIGLEADHGRV--------WGEIARSPLFHG--KDNKFSHDVFVSRLARE----GINE 148
             + G++ D   V               P  H     +  S + F S L  +     + E
Sbjct: 128 ATESGIKVDDYAVSQAEQSVARQNSVSIPEMHRRLAADGISPERFRSELRNQLLIQRLRE 187

Query: 149 KEYIDHYT------KMLSRTDVVGMFVGGMR---------------PSNLLLDQAKRFYF 187
           ++                R           +                S  +++Q ++   
Sbjct: 188 RDVESRVRVSDLDVDQYMRDQQQSAMSDPSKIELNLGHILVSVPENASPEVVEQRRQRAQ 247

Query: 188 ENRSV-----DYIVLNNRHVPAIADPSNAVLT-QWFEKYKDNYRAPEYKRISYILFDVHE 241
           +         D+  +      A   P+   L  +  ++Y D +     +     +     
Sbjct: 248 QAADRVRAGEDFAKVARDLSDAPEAPTGGELGLRPADRYPDLFLRTVQQVPVGGIAGPVR 307

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------QKEADEAFQSLK 291
                 +    L+           +     V  ++             ++ A+   + L 
Sbjct: 308 SPAGFHV----LRVIERSRAGIPATALQNHVRHILLRTGPQLTEAAAAERLAEYRRRILS 363

Query: 292 KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
               F  LA E  +  S      LG             +++ +L K  + +  +   FG 
Sbjct: 364 GQADFATLAREHSQDGSAKQGGDLGWAGPGRYV-PEFEEAVDAL-KPDEISQPVVSRFGV 421

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            +  +   + +     ++ +  + + +R  K  E      +  
Sbjct: 422 HLIQLLERREAKLTQREQ-RDMVRDAVREKKLEEAFTNWAQEA 463



 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 43/371 (11%), Positives = 108/371 (29%), Gaps = 50/371 (13%)

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            V      G++  +  + QA++      SV    ++ R       P             +
Sbjct: 124 QVQMATESGIKVDDYAVSQAEQSVARQNSVSIPEMHRRLAADGISP-------------E 170

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY-EKNKEKYFSPEIRTVE--QLVFPN 279
            +R+    ++        + E ++ +S+ ++     ++ +     P    +    ++   
Sbjct: 171 RFRSELRNQLLIQRLRERDVESRVRVSDLDVDQYMRDQQQSAMSDPSKIELNLGHILVSV 230

Query: 280 QKEA------------DEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
            + A             +A   ++ G+ F ++A +   +        LG    +  PD+ 
Sbjct: 231 PENASPEVVEQRRQRAQQAADRVRAGEDFAKVARDLSDAPEAPTGGELGLRPADRYPDLF 290

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ---EVKKDIANQMRITKAS 381
           L          G     +    G+ +  V     +   +      V+  +         +
Sbjct: 291 LRTV--QQVPVGGIAGPVRSPAGFHVLRVIERSRAGIPATALQNHVRHILLRTGPQLTEA 348

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
              +   +     L+       ++R               G          +P  E+ + 
Sbjct: 349 AAAERLAEYRRRILSGQADFATLAREHSQDG----SAKQGGDLGWAGPGRYVPEFEEAVD 404

Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEV 499
            +        K   ++ P  S   V + + +  R+ KL   E    V+   +  K  E  
Sbjct: 405 AL--------KPDEISQPVVSRFGVHLIQLLERREAKLTQREQRDMVRDAVREKKLEEAF 456

Query: 500 SSKANQLVLEY 510
           ++ A +     
Sbjct: 457 TNWAQEARARA 467


>gi|298372477|ref|ZP_06982467.1| ppic-type ppiase domain-containing protein [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298275381|gb|EFI16932.1| ppic-type ppiase domain-containing protein [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 650

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 19/119 (15%)

Query: 269 IRTVEQLVFPNQKEAD------------EAFQSLKKGKKFIQLAEEQGKSL----SDISL 312
              V  ++    + A               +  LK G  F  +A+E         S   L
Sbjct: 226 KVKVAHILKQFPENATKEQRAKLKSEIYAIYDKLKNGADFASMAKENSDDEMSANSGGVL 285

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
             F    + +V   ++ F L  KGD +  I   +G+ I  + + KP    SF+++K DI
Sbjct: 286 NEFGVGRMVEV-FENTAFGLKNKGDISSPIETPYGWHIIQLIDRKP--VDSFEKMKSDI 341



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 120/363 (33%), Gaps = 52/363 (14%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR-HVPAIADPSNAVLT 214
             +L+ T +V   V   + SN+L+    +        +Y+ L NR +V       +  L 
Sbjct: 3   RYILALTVIVISLVMNAQDSNILM-TLGKNKVTKDDFEYLFLKNRTNVKTKPQTIDEYLQ 61

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-------- 266
            +       +R       +     +    K+++   +++   Y  +K+K  +        
Sbjct: 62  TY-----KKFRLKVIDAEALGYDTLGSFRKELDSYRNQMAIGYLTDKDKEKALIEEAYRN 116

Query: 267 -PEIRTVEQLVF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS-- 311
             +      ++                ++A    + LKK + F  +A  +   +      
Sbjct: 117 MQQDVEASHILLLLPQNATPEDTAKVYQKALNIIKRLKK-ENFRTVATAESDDVGTKDNG 175

Query: 312 --LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK- 368
             LG  + + +    +   ++SL   G  +  I   +GY I  V+N + +       VK 
Sbjct: 176 GYLGWITGQMMV-YPVEKELYSLP-IGKISSPIRTGYGYHIIKVTNRRQAVGK----VKV 229

Query: 369 KDIANQM---RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
             I  Q       +   K+K +   + + L  G     +++      +         +  
Sbjct: 230 AHILKQFPENATKEQRAKLKSEIYAIYDKLKNGADFASMAKENSDDEMSANSGGVLNEFG 289

Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            G+ V      E      FG  +       +  P G +  +Q+ +  P      E++ +D
Sbjct: 290 VGRMV------EVFENTAFGLKNKGDISSPIETPYG-WHIIQLIDRKP--VDSFEKMKSD 340

Query: 486 VKK 488
           +  
Sbjct: 341 IIT 343


>gi|294669050|ref|ZP_06734136.1| putative PPIC-type PPIASE domain protein [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309042|gb|EFE50285.1| putative PPIC-type PPIASE domain protein [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 291

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 89/237 (37%), Gaps = 18/237 (7%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFEN-RSVDYIVLNNRHVPAIADPSN-AVLTQWFEKYK 221
           +    +       L+  +A+R   E  +       N R           A   Q ++ Y+
Sbjct: 57  LRNQLLSNTVTRMLVNQEARRLKLEQGQEFKTASENARKSAKEQGADKHADFKQQWDDYQ 116

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
                  +              K   IS+ E++  Y+++++ Y       + +++ PN+ 
Sbjct: 117 AALLIQAFVS---------HIIKTNPISDQEIRRAYDESRKYYQGSSEVQLGEILTPNKA 167

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD------SIFSLAKK 335
           +A++A + LK  K F   A +     +    G  + E+     L        +     KK
Sbjct: 168 DAEQAIKDLKAKKPFTDTARKYSADPAVKQTGGINPEFDALKDLEQSVPPIYAAVKDLKK 227

Query: 336 GDF-TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G F +  + G+  + I ++ + +P     F++V+ +I   ++  K S  V   Y++ 
Sbjct: 228 GQFTSTPVVGNGVFGIFYIHDKRPLQLPPFEQVQNNIRRSLQQQKISRAVDALYQKA 284


>gi|326798883|ref|YP_004316702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp.
           21]
 gi|326549647|gb|ADZ78032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp.
           21]
          Length = 464

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 66/479 (13%), Positives = 140/479 (29%), Gaps = 92/479 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 VG   +  S     + Q L   ++              G+   IL+ L++   L
Sbjct: 28  DKVAAVVGGNIILQSDIEMQYAQYLSEGNR-----------ADPGVKCMILEQLLTNKLL 76

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q      +E     V   I              ++       + G  E        K L
Sbjct: 77  TQQAAIDSIEVTEDEVDDNI--------------NNRLRYMTRQAGGQE-----QLEKFL 117

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +R+ +             + +Q      +             +      +   + ++FEK
Sbjct: 118 NRSLLQYK----EEMRPAVKEQLIAQKMQ-----------AKITEKTGITPLEVKRYFEK 162

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
              +   P Y        +V E     +++ +E Q  Y++                    
Sbjct: 163 IPKD-SLPNYN----TEVEVGEIVVFPKLTKEEKQPFYDR-------------------- 197

Query: 280 QKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
              A+     +K G  F  +A    ++ G + S   LG F +  +         F L K 
Sbjct: 198 ---AESLRMGIKAGDDFGTMARLYSQDPGSASSGGDLGFFDRSSMVK-EFTSVAFRL-KP 252

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVS---FQEVKKDIANQMRITKASEKVKEDYKRLE 392
           G+ + V    +G+    V   +     +      VK    N+  + +A +++   Y +++
Sbjct: 253 GEISNVFESEYGFHFLQVLERRGEQVRARHILIGVKP---NEQSMERAKKQIDSIYTQVK 309

Query: 393 E------FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
           +        A   S DE+++    + ++          +   ++ A  +      +    
Sbjct: 310 DNKIPFSTAAALYSGDEMTKYNGGMMLNAMNQQTRTTYIPVDQLDAADFSAIDTLKAGEY 369

Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
             P +        +G      +K         LE+    +K+  +  K    VS    +
Sbjct: 370 SKPFAFSDPQTKKEGYRFLY-LKSRTEPHRASLEKDYAKIKELAEADKLNRVVSEWFEE 427


>gi|296313516|ref|ZP_06863457.1| SurA/PPIASE domain protein [Neisseria polysaccharea ATCC 43768]
 gi|296839936|gb|EFH23874.1| SurA/PPIASE domain protein [Neisseria polysaccharea ATCC 43768]
          Length = 332

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     +       +P  +R     I           +   +S  E+ A  E+
Sbjct: 117 IQASEAEIDAVVAQNPSLKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 176

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 177 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 236

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ SL K G  +  +   FG+ I  ++ ++ + T
Sbjct: 237 QDASAGNGGDLGWFADGVMV-PAFEETVRSL-KPGQVSAPVRTQFGWHIIKLNEVREAGT 294

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + V+  +   +   KA     +  + L
Sbjct: 295 PQ-ERVRNAVRQYIFQQKAERATADLLRDL 323


>gi|90409117|ref|ZP_01217239.1| diadenosinetetraphosphatase [Psychromonas sp. CNPT3]
 gi|90309791|gb|EAS37954.1| diadenosinetetraphosphatase [Psychromonas sp. CNPT3]
          Length = 413

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/405 (13%), Positives = 126/405 (31%), Gaps = 67/405 (16%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V ++ +  S      K       +               L ++ILD L++ +   Q  
Sbjct: 10  AIVNQEVILSSDVKRMEKDIRARYLKM-----QQALPSKQKLRQQILDKLINDSLQLQVA 64

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
           E +GL  D+ +V   I +      K    +   +   L+R+G + + + D     L+  +
Sbjct: 65  ERMGLRLDNAQVDQTIQQI----LKKEGKNIAQYQQELSRKGQSYQAFSDSVRNELTINE 120

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN--AVLTQWFEKYK 221
           +  M V        + +Q      +  + D       H   I   ++  A L    +  K
Sbjct: 121 IRQMQVRQRLN---ISEQEINLMVQRLNKDGKKNTQFHFIHILLKTDPNAPLHAQQQAKK 177

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISN------DELQAEYEKNKEKYFSPE------- 268
              R  + +  S +     +  K ++  +      DE+ + +    ++  + +       
Sbjct: 178 IMQRLAQGESASSLARQYSQGPKALDGGDWGWRTVDEIPSLFADKFDELKTKKGDILGPF 237

Query: 269 -----------------------IRTVEQLVFP-----NQKEADEAF-----QSLKKGKK 295
                                        ++       + K+A         + L+    
Sbjct: 238 KTRLGLSIIQVSDKKGIKNTTTLEVNARHILIKSNIILSDKKAKLLLNTYRQEILEGKAN 297

Query: 296 FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F +LA    ++ G ++   +LG  +   +      D   SL + G+ +   H   G+ I 
Sbjct: 298 FAELARAHSQDPGSAVKGGNLGW-ADPNMYVPEFRDRAQSL-RIGEISKPFHTMHGWHIL 355

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
            V   + + T      K+   + +   +   +V      + +   
Sbjct: 356 EVLEKRQADTTEKAS-KQKAYSILYKQRFPAEVYAWMNEIRQEAY 399



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 92/299 (30%), Gaps = 18/299 (6%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
           K   R  ++   +       +      R            +  +    IA      L++ 
Sbjct: 43  KQKLRQQILDKLINDSLQLQVAERMGLRLDNAQVDQTIQQILKKEGKNIAQY-QQELSRK 101

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
            + Y+  +       ++       +  +++ IS  E+    ++  +            ++
Sbjct: 102 GQSYQA-FSDSVRNELTINEIRQMQVRQRLNISEQEINLMVQRLNKDGKKNTQFHFIHIL 160

Query: 277 FPN--------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--LA 326
                      Q++A +  Q L +G+    LA +  +    +  G +    + ++    A
Sbjct: 161 LKTDPNAPLHAQQQAKKIMQRLAQGESASSLARQYSQGPKALDGGDWGWRTVDEIPSLFA 220

Query: 327 DSIFSL-AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKA 380
           D    L  KKGD         G  I  VS+ K     +  EV      I +   +   KA
Sbjct: 221 DKFDELKTKKGDILGPFKTRLGLSIIQVSDKKGIKNTTTLEVNARHILIKSNIILSDKKA 280

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
              +    + + E  A    +     ++   ++    + +A  ++   E        ++
Sbjct: 281 KLLLNTYRQEILEGKANFAELARAHSQDPGSAVKGGNLGWADPNMYVPEFRDRAQSLRI 339


>gi|304313026|ref|YP_003812624.1| hypothetical protein HDN1F_34090 [gamma proteobacterium HdN1]
 gi|301798759|emb|CBL46992.1| Hypothetical protein HDN1F_34090 [gamma proteobacterium HdN1]
          Length = 750

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 10/166 (6%)

Query: 235 ILFDVHEKEKKI-EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           +     +  + I  I++ E+ A YEK++  +      +   +   +QK+AD     ++KG
Sbjct: 559 MHHSPEQIRRLIKTITDTEIDAYYEKHQRDFQQIGEVSARHITVSSQKDADRVVDEIRKG 618

Query: 294 KKFIQLAEEQGKSLS-----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG- 347
             F +   +   +         S+G  S+    ++S    +  +   G+ +       G 
Sbjct: 619 LSFEEAVRKYSLASDKTENPPGSMGRISRTE-KNLSFLQKLTLILPAGEVSNSFRMPDGK 677

Query: 348 -YVIAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            + I  V +    S   S + V+ +I   +   KA  +  +    L
Sbjct: 678 SWEILWVDSRTAVSLPKSDESVRSEIRRTLAQEKAQTQFADQVADL 723


>gi|156973131|ref|YP_001444038.1| hypothetical protein VIBHAR_00810 [Vibrio harveyi ATCC BAA-1116]
 gi|156524725|gb|ABU69811.1| hypothetical protein VIBHAR_00810 [Vibrio harveyi ATCC BAA-1116]
          Length = 427

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 69/404 (17%), Positives = 129/404 (31%), Gaps = 90/404 (22%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            KI+  +LF   L  G++ A   +      V V    +  S    + K       Q  G 
Sbjct: 1   MKIWKSLLFTALLSCGVTAAPVEL--DKVAVIVNDGVILQSDIDTAMKTLQANARQS-GK 57

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            + S       L  ++++ L+      Q  E IG+  D  R+   IA       ++N  S
Sbjct: 58  SLPSASV----LKDQVVEKLIIDTLQGQEAERIGVRIDDNRLNQAIAEI----ARNNNQS 109

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            +   + +  EG++  E+         R  +                   R     R ++
Sbjct: 110 VEQLAASVQAEGLSYSEF---------REQIRKEIAAS----------EARNALVRRRIN 150

Query: 194 YIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
            +      +    A  +NA +                 +I +I     + + K E+    
Sbjct: 151 ILPAEVDSLADQLAKETNATVQ---------------YKIGHIQLRFSDDKDKSEV---- 191

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSD 309
                                      + EA+   + LK G  F ++A    K   +L  
Sbjct: 192 ---------------------------EAEANALVKKLKDGADFSEMAYTYSKGPKALQG 224

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
              G   KE +P    AD I  +  KG          G+ I  + ++K   TV+  EV  
Sbjct: 225 GDWGWMRKEEMP-TIFADQI-KMQNKGSIIGPFRSGIGFHILKIEDVKGLETVAVTEVNA 282

Query: 370 D---IANQ--MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
               I     +    A +++ E  +R++   A   +  +++ + 
Sbjct: 283 RHILIKPTVILSDDGAKKELNEFIRRIK---AGEATFGQLATQY 323


>gi|296123565|ref|YP_003631343.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           limnophilus DSM 3776]
 gi|296015905|gb|ADG69144.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           limnophilus DSM 3776]
          Length = 415

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 103/293 (35%), Gaps = 39/293 (13%)

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG--INEKEY--------IDHYTKMLSRT 162
            +V   +  +P+F  +      + +   LA+    +   ++          +    + R 
Sbjct: 99  AQVVARVNGAPIFASEV----LERYGEVLAQAREKLPPDKFNLLRENIIAQNLRAHVERQ 154

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK- 221
            +V      M+P    L Q   +       + + L    +     P        +E  K 
Sbjct: 155 LIVERMRADMKPDQ--LKQLDGYLDAAFEKEMVKLK-EQLKVQTKPELE-----YELNKR 206

Query: 222 ----DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-- 275
               ++ R         + +   +  K   I+  +L   YE + E++        +Q+  
Sbjct: 207 GTCLEDVRQSFQNNRIAMEYLAVKAGKPEPINRKDLVEYYESHPEEFRLESRVKWKQIQC 266

Query: 276 --VFPNQKEA----DEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLA 326
             +  +Q++A      A + L  G+ F  +A +    ++    G      K  + D  L 
Sbjct: 267 SFLKSDQEQARVKMKSALEELANGESFEDVARKYSDGVTAKEGGHWDWTQKGSLSDKKLE 326

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           + +F+ AK G+ + V      Y +  V   + +    F EV+++I  ++  T+
Sbjct: 327 EILFT-AKVGELSDVTIIGRAYQVVFVEERESAGMRPFAEVQQEIHKKIEPTR 378


>gi|294673596|ref|YP_003574212.1| peptidyl-prolyl cis-trans isomerase-like protein [Prevotella
           ruminicola 23]
 gi|294472759|gb|ADE82148.1| peptidyl-prolyl cis-trans isomerase-like protein [Prevotella
           ruminicola 23]
          Length = 711

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 89/726 (12%), Positives = 193/726 (26%), Gaps = 137/726 (18%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-----VSGSSTVVSVGRQKVPFSSF 56
           L  IRK  R       + +    F+     +A  S           +  V   K+    F
Sbjct: 4   LGKIRK--RGVALVCIIGLGLFAFI---AEEAFRSCEATKNQQRQQIGEVLGNKINVQDF 58

Query: 57  INSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
                +   ++   +     + E      +  ++    V+   +    E +GL      +
Sbjct: 59  QALVDEYQDVLKITQNRENFSEEELNQ--IKDQVWSQYVNEQIIANEAEKLGLTVTDEEL 116

Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRL---AREGINEK------------EYI 152
                      + +SP  + +  +F   +    L    + G N +            ++I
Sbjct: 117 QNIMKEGTNPMLMQSPFVNQQTGRFDVTMLTKFLDDYKKAGSNPQLAESYQTIYKYWQFI 176

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNL----------------------------------- 177
           +   +  +        +     SN                                    
Sbjct: 177 EKQLRTNTLAQKYQALLSNCLLSNPISAKMAFEGQNTESDIQLASIAYSSINDNDVKVDD 236

Query: 178 --------LLDQAKRFYFENRSVDYIVLNNRHVPAI-----ADPSNAVLTQWFEKYKDNY 224
                      +  +   E+R + Y+        A         ++A             
Sbjct: 237 KDLKAKYDEEKEMFKQDVESRDIKYVDFQVVASAADRKELMKTMTDAAQKLQSGANAAEV 296

Query: 225 RAPEYKRISYILFDVHEKEKKIEI-----------SNDELQAEYEKN------KEKYFSP 267
                 + +Y      ++    +I           ++   +  ++          K  +P
Sbjct: 297 ARKAQSQFAYTGMAATKRAYPSDIAAKLDSMAVGQTSAVFETAFDNTLNVVKLIAKTQAP 356

Query: 268 EIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
           +     Q+          +K AD  + +LK G  F QLA++ G+     +    +     
Sbjct: 357 DSIEYRQIQVGGATVEAAKKTADSIYTALKAGADFEQLAQKYGQ---PGTKQWLTSAMYE 413

Query: 322 DVSLADSI----FSLAKKGDFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           + S  D       +         V +  F  G +I  V+  K         V   I + +
Sbjct: 414 NSSSIDEESKTYLAAINNLAVNDVKNLEFTQGNIILQVTARKAMVDKYDAAV---IKHTI 470

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
             +K  +   E Y +  +F++   +++++ +        +              VA +  
Sbjct: 471 DFSK--QTYSEAYNKFSQFVSENKTIEDMEKNAAKFGFKV--TPRQDLFNYEHNVANLRS 526

Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
             + +  +F               +   + V + +  P   R +  +   +K +    K 
Sbjct: 527 TRETMKWIFDAKPGEVSPLYECGNNDHLLVVALTKINPVGYRDMSSLKDVLKAEVIRDKK 586

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN-----RMDNENKFFGYDGIS 550
            E++ +K           G N     K  GA +   NQI       +            +
Sbjct: 587 FEQIKAKL---------AGVNDLAAAKAKGARIDAVNQITFSAPVFVQATGASEPALAGA 637

Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
              +   E  K     NG +Y+   V  S     +          QM         +  L
Sbjct: 638 VAAAKAGEFSKHVVKGNGGAYLFKVVKKSNRAGAKFDAAQTEAQLQMQATQAARIFMQEL 697

Query: 611 KSQYSV 616
             +  V
Sbjct: 698 YQKAGV 703


>gi|320182962|gb|EFW57830.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri CDC
           796-83]
          Length = 428

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 60/391 (15%), Positives = 115/391 (29%), Gaps = 78/391 (19%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V           
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRN--------- 143

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
                                     V          +    ++  +   A     +S+I
Sbjct: 144 ------------------------NEVRRRITILPQEVESLAQQVGNQNDASTELNLSHI 179

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           L  + E     +++  E                             +A       + G  
Sbjct: 180 LIPLPENPTSDQVNEAE----------------------------SQARAIVDQARNGDD 211

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           F +LA         ++ G      I +   +     S AKKGD    I    G+ I  V+
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 355 NIK-PSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           +++  S  +S  EV    I  +       E+ +   +++   +  G +    +   K  S
Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKT--TFAAAAKEFS 329

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
            D    +  G           P     L R+
Sbjct: 330 QDPGSANQGGDLGWATPDIFDPAFRDALTRL 360


>gi|167749278|ref|ZP_02421405.1| hypothetical protein EUBSIR_00229 [Eubacterium siraeum DSM 15702]
 gi|167657771|gb|EDS01901.1| hypothetical protein EUBSIR_00229 [Eubacterium siraeum DSM 15702]
          Length = 472

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 111/350 (31%), Gaps = 63/350 (18%)

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLE-ADHGRVWGE--------------------- 118
            +    K I+D L +   + +  +++GL+      +                        
Sbjct: 95  YAQSYRKNIIDMLTNEKLILRKAKELGLDQLTEEEMAEVEKAYTKNLSDWYASFEKKAKT 154

Query: 119 ---IARSPLFHGKDNKFS-------HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
              I+       +D+           ++F   +A  G+ E  ++   T    +  V    
Sbjct: 155 ALGISTDDTSGTEDSANDEKILEKEKELFNEYIAGFGLTEDTFLMWQTNTAIQKKVNDYL 214

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
           +  +  S+  +D                              A   Q +EK   +Y    
Sbjct: 215 LKDITVSDSEVD--------------------DYITKLK---AEAKQAYEKSASSYATDS 251

Query: 229 YKRISYILFDV---HEKEKKIEISN-DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             +  +I  D          I  S+  E+ A   ++       + +  E+L    +K   
Sbjct: 252 EYKKVWIPEDARYIKYIAVGIASSDYAEINAARNESGADDAEIDKKRDEKLAEIKEKADA 311

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTP 340
              ++   G  F  + +E   + S+ + G      + + +   +L D++F+L K GD + 
Sbjct: 312 ALKKATADGADFDAVVKEYSSAYSESTAGEQILVLNSKGLISDALYDAVFALEKPGDISG 371

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +I    GY I    +          + +K +  ++  ++ SEK     + 
Sbjct: 372 LIPTDSGYYIVKYVSDAKVTDSDLSDYRKTVRQELLTSRQSEKTNAILEE 421


>gi|308185631|ref|YP_003929762.1| survival protein SurA precursor [Pantoea vagans C9-1]
 gi|308056141|gb|ADO08313.1| survival protein SurA precursor [Pantoea vagans C9-1]
          Length = 431

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 58/378 (15%), Positives = 110/378 (29%), Gaps = 74/378 (19%)

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
           Q+ G  +  ++     L  +IL+  +    + Q  E  G++    ++   I         
Sbjct: 54  QQAGQQLPDDK----TLRHQILERQIMDNIILQMGEKAGIQISDEQLDQAIQNIAA---- 105

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
            N+ S D   SRLA +G+N   Y     K ++                            
Sbjct: 106 QNRMSLDQLRSRLAYDGMNYSVYRSQIRKEMT---------------------------- 137

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
                   + N  V          +     +            +S+IL  + E   + ++
Sbjct: 138 -----IAEVRNNEVRRRVTILPQEVDTLANQIGSQNSQGTELNVSHILLPLPENPTQQQV 192

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
              E                              A +    LK G  F ++A        
Sbjct: 193 DEQE----------------------------TLAKQLVGELKNGADFGKMAVTYSADSQ 224

Query: 309 DISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQE 366
            +  G+     I +  +L     + AKKGD    +    G+ I  V++++  S  VS  E
Sbjct: 225 ALKGGNMGWGKIEELPTLFAQALATAKKGDIVGPVRSGVGFHILKVNDLRGESKNVSVTE 284

Query: 367 VKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           V    I  +       ++ +   +++   +  G +    +   K  S D    +  G   
Sbjct: 285 VHSRHILLKPSPILTDDQARAQLEQIAADIRSGKT--TFAAAAKQYSDDPGSANQGGDLG 342

Query: 426 KGKEVAAIPYKEQLLFRV 443
                   P     L R+
Sbjct: 343 WTSPEVFDPAFRDALLRL 360


>gi|297205678|ref|ZP_06923074.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus jensenii JV-V16]
 gi|297150256|gb|EFH30553.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus jensenii JV-V16]
          Length = 319

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 27/195 (13%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             S   + + +  YK  Y               +   K I   L  V   +   +I++ +
Sbjct: 90  KVSQKQVDKEYNAYKKQYGSSFESALEQNGYTTSSFKKNIETNLLTVAALKDIKKITSKQ 149

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
            Q  ++  + K       TV+ ++   +  A++  + LK G  F  LA++     +    
Sbjct: 150 EQKAWKSYQPK------VTVQHILVSKKSTAEDIIKQLKSGTSFATLAKKYSTDSATKDK 203

Query: 313 G-----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           G       S +   D     + F L      T  +    GY I  +    PS    F + 
Sbjct: 204 GGKLAAFDSTDTTLDSDFKTAAFKLKTGEYTTTPVKTQSGYEIIKMIK-HPSKGK-FSDH 261

Query: 368 KKDIANQMRITKASE 382
           KK+I  Q+  +   +
Sbjct: 262 KKEIDEQIYQSMEQD 276


>gi|320537952|ref|ZP_08037859.1| hypothetical protein HMPREF9554_02614 [Treponema phagedenis F0421]
 gi|320145205|gb|EFW36914.1| hypothetical protein HMPREF9554_02614 [Treponema phagedenis F0421]
          Length = 510

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 57/491 (11%), Positives = 149/491 (30%), Gaps = 94/491 (19%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV--PFSSFINSWKQELGMISQKIGF 73
           I  +   + F+    +      SG  ++ +    ++              +   +++ G 
Sbjct: 18  IIFLFAVIAFVFIPGAGGFGRNSGLISLGTWDGIRIENTPDGLFAKQYAMISRAAEQYG- 76

Query: 74  VVNSERARSVGLDKKILDNLVSGATLD----QFIEDIGLEADHGRVWGEIARSPLFHGKD 129
           +  ++ A+   +D +I+      A ++    Q  +  G       +   +   P +   +
Sbjct: 77  LYPNDPAQREMIDYQIMHIAFQAAVIELASMQTTQKSGFVLTSDMLNKHL--IPFYSDSN 134

Query: 130 NKFSHDVFVS------RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
             +S  ++ +         R+ +++  Y   Y + L      G    G++ S   +   K
Sbjct: 135 GIYSPQIYQNTSEQVKLARRKEVSDAIYSSQYFQNLFSN---GNDFSGLKMSENEVKFIK 191

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
               + RS  YIV+ ++  PA        + ++ +++KD +                   
Sbjct: 192 DMTKDERSFQYIVITDKVFPA------ENIVKYGKEHKDLF------------------- 226

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEE 302
                                    +  +  L +  Q+EA +    L KK   F      
Sbjct: 227 ------------------------AVHHLSMLTYATQEEAKKVLDLLNKKETSFEDAVAT 262

Query: 303 QGKSLSDISLGSFSKE-------YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
                   S G  +           P+ +  +++ +L +  + + V+    G+ I     
Sbjct: 263 GSTKTGTDSAGKMTHSYRSDVNAMFPETTDLNAVLNL-QPQELSAVVKTGSGFAIVRCDA 321

Query: 356 IKPSFTVSF--QEVKKDIANQMRITK---ASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
           +       F  +E++  + N +   +     + + ++ KR  +     +     +++  +
Sbjct: 322 L--PTEPDFASEEMRTHVFNYLLNNERGIVEDYIADEAKRFVDEAKKESGFGAAAKKANL 379

Query: 411 VSIDLPLVDFAGKDV---------KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
             +          +V              + I   E      F   +    D    L   
Sbjct: 380 NVLTSKSFSINYGNVSVLPQLPRQSDPAFSGIERNENFFKTAFSLKEGQISDPI--LLGN 437

Query: 462 SYMWVQIKESI 472
             + +++ E  
Sbjct: 438 QVVVLKLHEKK 448


>gi|120599971|ref|YP_964545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|146292095|ref|YP_001182519.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|120560064|gb|ABM25991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|145563785|gb|ABP74720.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|319425391|gb|ADV53465.1| outer membrane protein maturation factor, peptidyl-prolyl cis-trans
           isomerase, SurA [Shewanella putrefaciens 200]
          Length = 434

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/342 (11%), Positives = 105/342 (30%), Gaps = 57/342 (16%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
              N        L  ++++ L+      Q  + IGL     ++   I           K 
Sbjct: 56  KAANQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KM 111

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN-- 189
           S      ++  EG++  +Y +   + ++  ++        ++ S   +    +   E   
Sbjct: 112 SVAQMQQKIESEGLSFSQYREQLREEITLGEIQRIQVQRRIQVSPQEISSLVKLIQEQGM 171

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFE---------KYKDNYRAPEYKRIS------- 233
           + V+Y  + +  +    +P++  L    +         K  +++R       S       
Sbjct: 172 KDVEY-QIGHILIDVPNNPTSEQLEASSKRANIVLERLKNGEDFRRTAIASSSGPKALEG 230

Query: 234 ----YILFDVHEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQ 274
               Y+  +         +S  +               +    +    +    E      
Sbjct: 231 GIWDYMNINEMPTLFAEVLSGAKTGDIIGPIKSGAGFHIIKIMDSRGLQTKEIEEVRARH 290

Query: 275 LVFP-------NQKEA--DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321
           ++         ++ +A  ++  + ++ G+ KF  LA +  +     + G    ++   I 
Sbjct: 291 ILLKPSPILSDDRAKAMLEQFLKQIRAGEAKFEDLARQYSEDPGSAAKGGELGWADPNIY 350

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               A ++ SLA     +     + G+ I  +   + +    
Sbjct: 351 VPEFAQTLSSLA-IDQISEPFRTTHGWHITQLEERRKTDATD 391



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 104/306 (33%), Gaps = 37/306 (12%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             +L+R  +      G+   +L LDQA       + +                 +  L+ 
Sbjct: 75  RLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQKMSVA-------QMQQKIESEGLSF 127

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
                   YR    + I+       + +++I++S  E+ +  +  +E+        +  +
Sbjct: 128 ------SQYREQLREEITLGEIQRIQVQRRIQVSPQEISSLVKLIQEQGMKDVEYQIGHI 181

Query: 276 VF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322
           +              + K A+   + LK G+ F + A         +  G +    I + 
Sbjct: 182 LIDVPNNPTSEQLEASSKRANIVLERLKNGEDFRRTAIASSSGPKALEGGIWDYMNINEM 241

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRI 377
            +L   + S AK GD    I    G+ I  + + +   T   +EV+        +  +  
Sbjct: 242 PTLFAEVLSGAKTGDIIGPIKSGAGFHIIKIMDSRGLQTKEIEEVRARHILLKPSPILSD 301

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
            +A   +++  K++    A     ++++R+    S D       G+         +P   
Sbjct: 302 DRAKAMLEQFLKQI---RAGEAKFEDLARQY---SEDPGSAAKGGELGWADPNIYVPEFA 355

Query: 438 QLLFRV 443
           Q L  +
Sbjct: 356 QTLSSL 361


>gi|242237960|ref|YP_002986141.1| nitrogen fixation protein NifM [Dickeya dadantii Ech703]
 gi|242130017|gb|ACS84319.1| nitrogen fixation protein NifM [Dickeya dadantii Ech703]
          Length = 279

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 75/227 (33%), Gaps = 27/227 (11%)

Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT----QWFEKYKDNYRAP 227
             P     D  ++   + R    +V     +      ++ VL     Q  E       AP
Sbjct: 26  ALPPQHQDDFQRQLARQCRLEQAVV--EAALCQSLTVTDDVLQLIEQQLAEPLAQAGFAP 83

Query: 228 EYKRISY------ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           E ++          L       +    +  ++   Y ++ +++  PE R    L+   + 
Sbjct: 84  EERQAVIRHHALMELQLTWVAAQAAAPTGQDVALWYRQHADRFLRPEQRLTHHLLLTAED 143

Query: 282 EADEAFQSLK----------KGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
           E   A    +          +  +F +LA        +L    LG  S+  +    L  S
Sbjct: 144 ERTAALVRAQIRGFHRTLCREPAQFERLARRYSHCPSALEGGLLGWVSRGLLF-SELEQS 202

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           +F + ++G  +  +    G+ +     I+P   +   E    +++ +
Sbjct: 203 LF-MLREGQVSEPVETEIGWHLLWCEAIRPEAPLPESEALPKVSDYL 248


>gi|187477204|ref|YP_785228.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N]
 gi|122070624|sp|Q2KXA6|SURA_BORA1 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|115421790|emb|CAJ48301.1| survival protein (peptidyl-prolyl cis-trans isomerase) [Bordetella
           avium 197N]
          Length = 506

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 93/318 (29%), Gaps = 53/318 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V +  +      +  K+    + ++ G  +  +      L K++L  L+     
Sbjct: 56  DGIAAIVNKDVITMREVQDGVKRAKVDLKER-GIQLPDDNV----LQKQVLQRLIFDRLE 110

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+  D  +V   I          NK +     + + + G++  +Y     + +
Sbjct: 111 RQEADRLGIRVDDAQVTQAINMVAS----RNKLTPQQLRAEVEKNGLSWDDYRKSLREEI 166

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
               +                         R++D  ++           ++A +  + + 
Sbjct: 167 RTDRLR-----------------------QRTIDNHII----------ITDAEVDAYLKD 193

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
              N         + +          + ++  ++         +  SP+       V   
Sbjct: 194 QARNPALQPQSAQAPVQEAPAAATGPVMLALGQI----LVRVPEGASPDT------VASL 243

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDF 338
           +K+A++    LK+G  F  +A         +  G    +       L     S    G  
Sbjct: 244 RKKAEDILARLKRGDDFASVAAASSDGPEALEGGVMGVRPIDGWPDLFVKAVSNVPAGQV 303

Query: 339 TPVIHGSFGYVIAHVSNI 356
           + +I    G+ I  V   
Sbjct: 304 SGIIQSGNGFHILKVLQR 321



 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 49/147 (33%), Gaps = 16/147 (10%)

Query: 269 IRTVEQLVFPN---------QKEADEAFQSLKKG-KKFIQLAEEQGKS---LSDISLGSF 315
                 ++            ++  ++  Q L+ G  KF  +A +  +         LG  
Sbjct: 353 QTHARHILIKTSAVMSDQQARQRLEQVRQRLESGSAKFEDMARQYSQDATAPQGGDLGWV 412

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           +   +   S   ++ SL K G+ +  +   FG+ +  V   +       +  +      +
Sbjct: 413 NPGEMV-PSFEAAMNSL-KPGEISQPVESPFGWHLVQVLERRQKDVTD-EMQRMQARQAL 469

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMD 402
              +A    ++  ++L     +   ++
Sbjct: 470 FERRAGPAFEDWMEQLRAQAYIDNRLE 496


>gi|308066898|ref|YP_003868503.1| Parvulin-like peptidyl-prolyl isomerase [Paenibacillus polymyxa
           E681]
 gi|305856177|gb|ADM67965.1| Parvulin-like peptidyl-prolyl isomerase [Paenibacillus polymyxa
           E681]
          Length = 310

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 94/259 (36%), Gaps = 18/259 (6%)

Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
           +EGI+E++++    K      ++ M     +       +      +      +  +++  
Sbjct: 51  QEGISEEQWVAELKKRYGTDTLLQMLNR--KAVQAETKRLGIKITQEDLQQVLEQDSKGY 108

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPE---YKRISYILFDVHEKEKKIEISNDELQAEYEK 259
            +           +F++ +  +            Y +       + I++   E+   +E+
Sbjct: 109 DSD--------HAYFDEMQRQFGLDPVDLRNEAEYRIGLEKIATQGIQVQEAEIDEYWEQ 160

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF 315
           + E++   +   +  L   N +EA+     +K+G+ F  L +E         S   LG  
Sbjct: 161 HPEEFAVGKQIQLAALYVDNAEEAEALLDRVKQGESFDVLIQEYSGKPFGKDSSGQLGWV 220

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            +                  GD    I  + GY + +V +++   +   Q++++ I   +
Sbjct: 221 DEYDPLQPEAIMKAARELSSGDVAGPISVNDGYAVIYVQDVRLKNSPDKQQIRQQIRRSL 280

Query: 376 RITKASEKVKEDYKRLEEF 394
            + +A+  ++E  K L + 
Sbjct: 281 ALAQAAP-LEEVEKSLRDK 298


>gi|319940878|ref|ZP_08015217.1| hypothetical protein HMPREF9464_00436 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805760|gb|EFW02541.1| hypothetical protein HMPREF9464_00436 [Sutterella wadsworthensis
           3_1_45B]
          Length = 460

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/337 (11%), Positives = 89/337 (26%), Gaps = 95/337 (28%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +               + ++     N +      L  ++L+ L+S   +
Sbjct: 48  DRIVAVVNNDIITEHELEQRVHTVAINLRRQ-----NIQLPAMELLRAQVLERLISERAI 102

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q     G+  D   V   + +      + N  S +    RLA +G+N   + +     +
Sbjct: 103 LQRARQTGIRVDDQMVNASVEQI----ARQNNLSIEELRQRLAADGVNFASFRNEIRDEI 158

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +   +                                   R V    D S + +  +   
Sbjct: 159 TTQRLRE---------------------------------REVNEKIDISESEIDAY--- 182

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                                   ++  I  D+                   VE ++ P 
Sbjct: 183 ----------------------LAEQAGIKGDDKMEY--------------HVEHILLPV 206

Query: 280 Q---------KEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +           A+   +  + G+ F  LA        ++    LG  S   +P  + A+
Sbjct: 207 ETPAENDSVKTAAESLAKRARDGENFSSLAASFSRADDAMKGGDLGWRSLNDLP-ATFAE 265

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           ++ + +  G    V+     + +  + + +       
Sbjct: 266 ALRANSTPGSVY-VVSSQRAWHVFKLEDKRDGVQAKL 301


>gi|254517383|ref|ZP_05129440.1| chaperone SurA [gamma proteobacterium NOR5-3]
 gi|219674221|gb|EED30590.1| chaperone SurA [gamma proteobacterium NOR5-3]
          Length = 412

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/363 (12%), Positives = 103/363 (28%), Gaps = 60/363 (16%)

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
           L ++ LD L+      Q     G+     ++   +AR        N  + + F   L +E
Sbjct: 55  LIRETLDRLILENIQIQMGARFGVRISDAQLDQAMARIAG----QNGLTPEQFAMLLEQE 110

Query: 145 GINEKEYIDHYTKMLSRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
           G +  E   +  + +    V                 + L  ++ ++       + + +L
Sbjct: 111 GRSYGEIRQNIEREMIIQRVQQGNVNQLIQISEQEIENYLSTEEGQKLVQPEYRIIHALL 170

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI---SNDELQ 254
                 +  +   A  T + E   +  R+ E                  ++     D+L 
Sbjct: 171 PITSDTSETEV--AQSTAYCETLVERIRSGEPFDAVMASVPPQYVFSGGDLGWRKLDDLP 228

Query: 255 AEYEKNKEKYFSPE----------------------------IRTVEQLVFP-------- 278
           + +++        E                               V  ++          
Sbjct: 229 SLFQEVAPTLGRGETADLFQSPSGLHIVTMADQRGGGDMTINQTKVRHILIEPSEILTDE 288

Query: 279 -NQKEADEAFQSLKKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
             +  A E     + G+ F  LA E     G +     LG  S   +      +++ S  
Sbjct: 289 QARALAVELKARAEAGEDFGDLAREYSEDIGSAAEGGDLGWTSPGQMV-PEFENTMAS-T 346

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           +    +  +   FG+ I  V + +          K  +   +   K  E++    +++ +
Sbjct: 347 EINTISAPVRSQFGWHILEVLDRREKDVTE-DMRKAQVREFLHGRKYQEELDAWLRKIRD 405

Query: 394 FLA 396
              
Sbjct: 406 EAF 408


>gi|128298|sp|P14890|NIFM_AZOVI RecName: Full=Protein nifM
 gi|142367|gb|AAA64732.1| nifM protein [Azotobacter vinelandii]
          Length = 292

 Score = 78.5 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 101/269 (37%), Gaps = 47/269 (17%)

Query: 175 SNLLLDQAKRFYFENRSV-DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE----- 228
           S   L QA R     R + D ++ +   +  +  PS   L + +      Y +PE     
Sbjct: 31  SEDQLQQADRIIGRQRHIEDAVLRSPDAIGVVIPPS--QLEEAWAHIASRYESPEALQQA 88

Query: 229 ----------YKRISYILFDVHEKEKKI-----EISNDELQAEYEKNKEKYFSPEIRTVE 273
                      + +      V      +     EIS+ ++   Y  + E++  P      
Sbjct: 89  LDAQALDAAGMRAMLARELRVEAVLDCVCAGLPEISDTDVSLYYFNHAEQFKVPAQHKAH 148

Query: 274 QLVF-------PNQKEA----DEAFQSLK-KGKKFIQLAEEQG---KSLSDISLGSFSKE 318
            LV          ++ A    +   + L+ K ++F + A +      ++    LG     
Sbjct: 149 ILVTINEDFPENTREAARTRIETILKRLRGKPERFAEQAMKHSECPTAMQGGLLGEVVPG 208

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN--QMR 376
            +    L   +F +A+ G+ +PV+    G+ + +  ++ P+  ++ +E+   + +  Q+R
Sbjct: 209 TLY-PELDACLFQMAR-GELSPVLESPIGFHVLYCESVSPARQLTLEEILPRLRDRLQLR 266

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEIS 405
             KA ++     K L   L    +++ ++
Sbjct: 267 QRKAYQR-----KWLVCLLQQNATLENLA 290


>gi|302879437|ref|YP_003848001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
           capsiferriformans ES-2]
 gi|302582226|gb|ADL56237.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
           capsiferriformans ES-2]
          Length = 261

 Score = 78.5 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 67/156 (42%), Gaps = 5/156 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            E+ KK  +++ +LQA YE  K K    E  +   ++   + EA      L K  KF +L
Sbjct: 106 QEQLKKNPVTDAQLQAGYETLKSKLGDKEY-SARHILVATEAEARNLIAQLGKKAKFEKL 164

Query: 300 A---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A   ++ G +    +LG    +   +   A+++ +L K       +   FG+ +  + ++
Sbjct: 165 AEKSKDTGSAERGGALGWTVPKNFVEP-FANALLNLKKGEYTKDPVQTQFGWHVIKLDDM 223

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +     SF E+K  +  +++     + + +     +
Sbjct: 224 RALKVPSFDEIKPQLLQRLQQQAIQKIITDLRAAAK 259



 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 11/78 (14%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
             +   V +  +       + K  L              +A +  L K ILD+L++   +
Sbjct: 25  DKSAAVVNKVAISQERVEMNVKSALAQ-----------GQADTPELRKAILDDLINREVM 73

Query: 100 DQFIEDIGLEADHGRVWG 117
            Q     GL+     V  
Sbjct: 74  AQAATASGLDKSADVVQQ 91


>gi|153820172|ref|ZP_01972839.1| survival protein SurA [Vibrio cholerae NCTC 8457]
 gi|126509282|gb|EAZ71876.1| survival protein SurA [Vibrio cholerae NCTC 8457]
          Length = 393

 Score = 78.5 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S  V V    +  S   ++ K       Q           +   L +++L+ L+     
Sbjct: 28  DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG++ D  R+   I        K+N+ + +  ++ +A+EG+   E+        
Sbjct: 83  QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  V          + L+  +      E  ++  ++         A  ++A +      
Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      +IS+I   V + + K                                  
Sbjct: 176 ----------YKISHIQLRVDDGQDKST-------------------------------A 194

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  A++    L+ G  F Q+A    K   +L     G   KE +P    AD I  +  KG
Sbjct: 195 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389
                     G+ I  + ++K   TV+  EV       K  I   +    A +++ E  +
Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310

Query: 390 RLEEFLALGTSMDEISRRE 408
           R++       +  E++++ 
Sbjct: 311 RIKN---GEVTFAELAQQY 326


>gi|268682955|ref|ZP_06149817.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332]
 gi|268623239|gb|EEZ55639.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332]
          Length = 357

 Score = 78.5 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 31/221 (14%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     +       +P  +R     I           +   +S  E+ A  E+
Sbjct: 142 IQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 201

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA    
Sbjct: 202 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYDQARNGTDFTGLARRYS 261

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 262 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 319

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
                 ++ I N +R     +K  +    L   L  G  +D
Sbjct: 320 P-----EERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVD 355


>gi|210620774|ref|ZP_03292241.1| hypothetical protein CLOHIR_00184 [Clostridium hiranonis DSM 13275]
 gi|210155168|gb|EEA86174.1| hypothetical protein CLOHIR_00184 [Clostridium hiranonis DSM 13275]
          Length = 339

 Score = 78.5 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 115/364 (31%), Gaps = 79/364 (21%)

Query: 32  DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
           D+         V  +  +K+ F+      ++        I      E   S    K+++ 
Sbjct: 44  DSNIKNDSKEIVAYIDGEKLRFNEVEKRAEETF-----YIDKNNTIENLGSDTYKKELIK 98

Query: 92  NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
            +V    L +  ++  +      +         F    +KF+ D            + E+
Sbjct: 99  YVVYEDILYRKAKEENIHVTKQEIEDTYCSVEKF--ITSKFNLD------------DAEF 144

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
            + Y     +  +V      ++    L +                            S++
Sbjct: 145 KNKYADD--KNKLVKSMRKSIKAYKYLDE------------------------KTRVSDS 178

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
               +++ +KD +R   Y+ I     D   K    ++S +E+                  
Sbjct: 179 EARAYYDAHKDKFREGVYRDIFISTVDSSGK----KLSKEEID----------------- 217

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP--DVSLADSI 329
                   +  A+E ++ L++G KF  L +E  + +     G      +   D  L + I
Sbjct: 218 ------NAENRANEIYRKLEEGCKFEDLEDEYSEDIEGTIPGGLGDLEMSFTDQKLRNKI 271

Query: 330 FSLAKKGD-FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
            +L K G+     +  ++GY I      +      F +VK++I + +   K  + ++   
Sbjct: 272 STL-KVGECIEKPLRSAYGYHIIKRVGTEEE---PFDKVKEEIKSMLSYKKQIKLIESLM 327

Query: 389 KRLE 392
           K   
Sbjct: 328 KEYN 331


>gi|71413418|ref|XP_808848.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Trypanosoma
           cruzi strain CL Brener]
 gi|70873138|gb|EAN86997.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Trypanosoma cruzi]
          Length = 124

 Score = 78.5 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLA 326
              V  ++   Q  A EA + + +G  F  +A E  +    S   LG   +  +      
Sbjct: 35  KVKVRHILCEKQGRAMEALKKINEGSSFADIAREYSEDKARSGGDLGWKRRGEMVGP-FQ 93

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++ F+L K G     +  SFGY I  V + +
Sbjct: 94  EAAFALPKGGMTPEPVRTSFGYHIILVEDKQ 124


>gi|289670942|ref|ZP_06492017.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 463

 Score = 78.5 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/408 (10%), Positives = 105/408 (25%), Gaps = 72/408 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    V  S    + +      + +   +   +      L +++L+ LV     
Sbjct: 32  DRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLPPDDV-----LQRQVLERLVLVKLQ 86

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +  G+      +   IA       + N  + D    +LA +G+   ++       +
Sbjct: 87  VGRADGSGIRVSDEELNRAIASI----AQQNGTTVDGLRQKLAADGMGYADFRASVRDEI 142

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL----- 213
               +   F    +  S   +D       +  +     L +  +      +   +     
Sbjct: 143 IVQRLRQSFAQSRISVSEGEVD--TALAQQAATGSQYHLAHILIGLPEGATAEQIATGQK 200

Query: 214 -----TQWFEKYKDNYRAPEYK-----------RISYILFDVHEKEKKIEISN------- 250
                    +K + ++ A   +            + +   D         I +       
Sbjct: 201 KVDGVKALIDKGELDFPAAAVRYSDSPNALEGGDLGWRSLDEIPNAFAQLIRDMKPGQVA 260

Query: 251 --------------DELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAF 287
                          E++      ++K  +        ++            + + D   
Sbjct: 261 GPLRGPSGFQLLKLVEMRDANAGGEKKMVT--EYNARHILVRVGDNQTEAQAKAKIDTIR 318

Query: 288 QSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
             +  G  F   A+E  +  +       LG F  +          +  LA  G  +    
Sbjct: 319 ARIVGGADFQATAKESSEDTNSRGQGGDLGWFPADAF-GPDFGKQVEGLA-DGAVSEPFR 376

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              G+ I      + +   S +  +  +   +   K  E+     + L
Sbjct: 377 TQAGWHIVQRVGSRQTDV-SAENQRAQVRETIGRRKLEEEYNRYLQEL 423


>gi|254480950|ref|ZP_05094196.1| SurA N-terminal domain family protein [marine gamma proteobacterium
           HTCC2148]
 gi|214038745|gb|EEB79406.1| SurA N-terminal domain family protein [marine gamma proteobacterium
           HTCC2148]
          Length = 425

 Score = 78.5 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/404 (12%), Positives = 114/404 (28%), Gaps = 59/404 (14%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  V    +  S            IS + G  +  E      L ++ LD L+  +  
Sbjct: 30  DQVIAVVEDDIIMASELRERMTSVTENISTR-GVEMPPEDV----LIRETLDRLILESIQ 84

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q    +G+     ++ G + R        N  S D F   L ++G + +   +   K L
Sbjct: 85  MQKGARVGVRISDTQLNGAMQRVAA----QNGLSLDQFRMALEQQGQSYQVMREQIRKEL 140

Query: 160 SRTDVVGM-------FVGGMRPSNLLLDQAKRFYFENRSV--DYIVLNNRHVPAIADPSN 210
               V                 + L  ++ ++       +    + ++     A  + + 
Sbjct: 141 IIQRVQQGNVNQRIEITEQEVENFLATEEGQKLTQPEYQIMHALLAVSPGAPAAEVERAE 200

Query: 211 AVLTQWFEKYKDNYRAPEYKRI---------------------SYILFDVHEKEKKIEIS 249
           A +T+  E+        E                          +        + K  + 
Sbjct: 201 AYVTRLLEEISAGAPFDEVVSAPGPYNFTGGNLGWRKLDDLPSLFSDVAPGLSKGKTTLV 260

Query: 250 NDE----LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK----GKKF 296
             +    L    ++   +        V  ++          +A     SLK     G+ F
Sbjct: 261 KSDSGFHLVHMADRRGGENMMVSQTKVRHILVKPSEIMTDGQAKALVTSLKARAEDGEDF 320

Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LA E  + +        LG      +       ++  +   G+ +  +   FG+ +  
Sbjct: 321 ADLAREYSEDIGSAQEGGDLGWTDPGQMV-PEFEQTM-QITAVGEISDPVKSQFGWHVLE 378

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           V + +          K    N +   K  E++    +++ +   
Sbjct: 379 VLDRRDEDMTDTAT-KNMAMNYLHNRKYQEELDAWLRQIRDEAF 421


>gi|291326505|ref|ZP_06124797.2| peptidylprolyl cis-trans isomerase SurA [Providencia rettgeri DSM
           1131]
 gi|291313964|gb|EFE54417.1| peptidylprolyl cis-trans isomerase SurA [Providencia rettgeri DSM
           1131]
          Length = 460

 Score = 78.5 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 103/362 (28%), Gaps = 59/362 (16%)

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
               L  +IL+ LV    + Q    + +      V   I        + N  +      R
Sbjct: 83  DDQTLRHQILERLVMDNIILQMASQMQINIPDEAVDATITDI----ARQNGLTLQQMQQR 138

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLN 198
           L  +GIN  +Y     K +   +V        +      +D          + +  + L+
Sbjct: 139 LTADGINMNQYRSEIRKEMLIAEVRNNEVRRRVTILPQEVDSLAEQMSSQANYEMGVNLS 198

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-------- 250
           +  +P   +P+   L    E   D   A   K   +    +        +          
Sbjct: 199 HILIPLAENPTQEQLKT-AEALVDKILAELKKGGDFGKLAIAYSADPQALKGGNMGWSRL 257

Query: 251 DELQAEYEKNKEKYFSPE-----------------------------IRTVEQLVFPN-- 279
            EL   + +  +     +                                   ++  +  
Sbjct: 258 QELPVVFAEQLKNAKKGDVVGPIRSGVGYHILRVNDVSGGSQPISVTEVKARHILIKSSP 317

Query: 280 -QKEADE------AFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADS 328
              +A          Q ++ GK  F   A+E  +       G      +P   D +  D+
Sbjct: 318 IMDDAQARQKLTKIAQEIRSGKISFEDAAKENSEDPGSALKGGELGWNMPDIYDPAFRDA 377

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           +  L  KG+ +  +  +FG+ +  + + + +   +    K      +   K +E+ +   
Sbjct: 378 LMRL-NKGELSQPVQSNFGWHLIQLEDTR-NVDKTDAAQKDQAYRLLFNRKFNEEAQSWM 435

Query: 389 KR 390
           + 
Sbjct: 436 QE 437



 Score = 70.4 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 101/312 (32%), Gaps = 39/312 (12%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR+   K +       +E  +++ I   E+ +  E+   +        +  ++ P 
Sbjct: 145 NMNQYRSEIRKEMLIAEVRNNEVRRRVTILPQEVDSLAEQMSSQANYEMGVNLSHILIPL 204

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--L 325
                       +   D+    LKKG  F +LA         +  G+     + ++    
Sbjct: 205 AENPTQEQLKTAEALVDKILAELKKGGDFGKLAIAYSADPQALKGGNMGWSRLQELPVVF 264

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKD---IANQMRITKAS 381
           A+ + + AKKGD    I    GY I  V+++       S  EVK     I +   +  A 
Sbjct: 265 AEQLKN-AKKGDVVGPIRSGVGYHILRVNDVSGGSQPISVTEVKARHILIKSSPIMDDAQ 323

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
            + ++  K  +E  +   S ++ ++     S D       G+          P     L 
Sbjct: 324 AR-QKLTKIAQEIRSGKISFEDAAKEN---SEDPGSALKGGELGWNMPDIYDPAFRDALM 379

Query: 442 RVFGKD--DPLSKD---HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           R+   +   P+  +   H + L D   +           D+          +     K  
Sbjct: 380 RLNKGELSQPVQSNFGWHLIQLEDTRNV-----------DKTDAAQKDQAYRLLFNRKFN 428

Query: 497 EEVSSKANQLVL 508
           EE  S   +   
Sbjct: 429 EEAQSWMQEQRA 440


>gi|254483636|ref|ZP_05096858.1| PPIC-type PPIASE domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036098|gb|EEB76783.1| PPIC-type PPIASE domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 284

 Score = 78.5 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 17/168 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------- 280
           E  +  ++     E  +  + S+   +    K ++    PE R    ++F  +       
Sbjct: 81  EAYQRDFVFRQYRESLQTPDFSDLAQERYKLKYEKIAAIPEKRVSSHILFAVKLGSSGKR 140

Query: 281 ----KEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-GSFSK-----EYIPDVSLADSIF 330
                +A      L+ G  F ++  E       +   G F K     E        + +F
Sbjct: 141 EEITPKAQGVLDQLRAGADFSKMVAEYSDEPGAVEKDGKFDKWVAYGELGVSPRYTNGLF 200

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
           S+A  G+++ ++   FG  I  +  I+      ++EVK DI  ++   
Sbjct: 201 SIASVGEYSDLVSTQFGIHIIRLDGIQEKSYKPYEEVKADIIKELEAE 248


>gi|184157913|ref|YP_001846252.1| parvulin-like peptidyl-prolyl isomerase [Acinetobacter baumannii
           ACICU]
 gi|332872750|ref|ZP_08440716.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059]
 gi|183209507|gb|ACC56905.1| Parvulin-like peptidyl-prolyl isomerase [Acinetobacter baumannii
           ACICU]
 gi|323517858|gb|ADX92239.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332739047|gb|EGJ69908.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059]
          Length = 436

 Score = 78.5 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/405 (12%), Positives = 121/405 (29%), Gaps = 69/405 (17%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           F+      V  V    +  S       +    +  +       E      L  ++LD L+
Sbjct: 26  FAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 80

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153
                 + ++  G++ D   +   + +      +    S + F  +L    I    Y + 
Sbjct: 81  LRQAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--IAPGTYENL 135

Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204
                + L+   +     +  ++ S+  +D      Q +        V ++ ++  +   
Sbjct: 136 RSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQE 195

Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242
           + + +  V +Q  +    N                  +R     P             + 
Sbjct: 196 VQNVAKEVRSQLAQSNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQT 255

Query: 243 EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
              I + +    L+    K  E+           ++            ++  D  ++ LK
Sbjct: 256 TDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLK 315

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA     + G +    SLG  +   +        +  +   G+ +      FG
Sbjct: 316 AGEDFAILAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFG 373

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + I  V++ +           KD+ ++ +   A + + E     E
Sbjct: 374 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 408


>gi|329888709|ref|ZP_08267307.1| PPIC-type PPIASE domain protein [Brevundimonas diminuta ATCC 11568]
 gi|328847265|gb|EGF96827.1| PPIC-type PPIASE domain protein [Brevundimonas diminuta ATCC 11568]
          Length = 313

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 64/190 (33%), Gaps = 10/190 (5%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            +S   ++  Y + +    + E   V  ++ P +++AD     L +G  F  +A ++   
Sbjct: 129 AVSEQAVERLYAEQQRLARATEEVRVRLILAPTKEQADAVLGVLGQGAAFEAVAAQRSID 188

Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                S   LG  + + +P      +       G     I    G+ +  V + +     
Sbjct: 189 DATRYSGGDLGYSTLDVLPGPYA--AALQGQTPGAVVGPIQTETGWAVLKVEDRRVETPP 246

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
           + ++ +  I   +      + +++   + E  +    S+DE         ++      A 
Sbjct: 247 TLEQARPQIVRYLTYEGVRQLLEQLRGQAEVEI----SLDEAKTAPPSAPVESAAPPAAQ 302

Query: 423 KDVKGKEVAA 432
           K        A
Sbjct: 303 KTSASPAGNA 312



 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 8/225 (3%)

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
            +     +D  S   + V  ++        + + + + + P  ++ L  V    + +  D
Sbjct: 63  LIGEDDPLDASSELFRRVMDEVVDQKLLAAEAERRGLDSSPAAQRRLQAV---RERILGD 119

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
             V       +  Q  E + A  ++L     +V+       T E+  +     VL    +
Sbjct: 120 MLVEKVVSGAVSEQAVERLYAEQQRLARATEEVRVRLILAPTKEQADA-----VLGVLGQ 174

Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
           G  F  +         T      +            +    G        PI+    + V
Sbjct: 175 GAAFEAVAAQRSIDDATRYSGGDLGYSTLDVLPGPYAAALQGQTPGAVVGPIQTETGWAV 234

Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
            KV + +V      ++    + + +  + +  ++  L+ Q  V +
Sbjct: 235 LKVEDRRVETPPTLEQARPQIVRYLTYEGVRQLLEQLRGQAEVEI 279


>gi|224824910|ref|ZP_03698016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
 gi|224602581|gb|EEG08758.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
          Length = 244

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 62/179 (34%), Gaps = 14/179 (7%)

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ----- 280
           A +   ++ +   +  + K  +  ++E++  Y  N  +Y   E+     ++         
Sbjct: 50  ADQTATVAALEHLLEREVKVPQAGDEEVERHYLANPGRYTVGELVFASHILLQVTERTPI 109

Query: 281 ----KEADEAFQSLKKGKK-FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSL 332
                 A+      +     F +LA E      +    SLG   +           +F+ 
Sbjct: 110 QPLLARAEAILHQAQADASRFAELAREMSNCPSAQVGGSLGQLQRGDTV-PEFEAVLFAD 168

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              G    V+   +G+ I  V   +P   +  +  +  +A+ +     S  +++  +RL
Sbjct: 169 GSVGVLPRVVRTRYGFHIVKVERREPGKLLPLEMARDRVASDLAEQSLSRSLQQYLERL 227


>gi|327403972|ref|YP_004344810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
           DSM 16823]
 gi|327319480|gb|AEA43972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
           DSM 16823]
          Length = 737

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/379 (12%), Positives = 115/379 (30%), Gaps = 37/379 (9%)

Query: 271 TVEQLVFPNQK-EADEAFQSLK---------KGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
               ++    + +A +   + K             F +   +  +       G   ++++
Sbjct: 366 KARHILINAPEGDAKKVASAKKLADSLVKLVNNANFAEFVTKYSEDQGSKEKGGVYEDFM 425

Query: 321 PDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIA 372
               +   S F++ K      V+   FG+ I  V + K         V        +D  
Sbjct: 426 DYEMVEPFSKFAMEKPIGTIGVVKTQFGFHIMEVMDRKAGSKFPVLAVVEKTMLPSEDTK 485

Query: 373 NQMRITKASEKVKEDYKRLE---EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
             ++  KA   + +  + LE   +        D I+R+    S     +    +  K + 
Sbjct: 486 ADLK-DKAYTLLAKLDRELEKKSDITDKVILFDTIARKAGYYS---RPLRMFDESPKVQG 541

Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ-IKESIPARDRKLEEVLTDVKK 488
                  + +L   +  +  +    +  + D   + +  +         +L +V   ++ 
Sbjct: 542 FVTKMAIQTILELAYNDEAKVGDMCSAPIQDDKRLVIAMVSSIREKGVPQLVDVYERMRT 601

Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN-QINRMDNENKFFGYD 547
           D    K A ++  K   +         N   + K L   ++           +   +  +
Sbjct: 602 DAMNEKRANKILKKIGSV--------TNLEVLAKKLKTEVMNAEVTFATPSIQGGGYEPE 653

Query: 548 GISQVFSGPVEMVKCFPIENG-LSYVVFKVTN-SKVGPVQEKDKFISYLTQMMNKDLLDS 605
            I  +FSG ++         G     V +V    K   V   D     +   +   + + 
Sbjct: 654 VIGALFSGKIKDKSSSKATVGQSGVYVIRVNKSVKAQTVTSYDAEKMQMLSQIKGSIANV 713

Query: 606 VIAYLKSQYSVTVHDNLIQ 624
               L+ + +V  +  L+ 
Sbjct: 714 SRQALQKKMNVMDNRALLD 732



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 77/658 (11%), Positives = 187/658 (28%), Gaps = 86/658 (13%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN---SWKQELGMISQKIGF 73
              +  + F++ GL D + S   S    ++  + V  + + +    ++       ++   
Sbjct: 17  ITGLALLTFILTGLFDKIGSSVESGNYGTIDGEVVDTAIYNSKLIQFQNTDRQQVEQQQQ 76

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR------------VWGEIAR 121
              +++      DK      V    L+   E +GL                  +  EI +
Sbjct: 77  RQYNDQDAEQSADK-AWSATVDEIVLNGEYEALGLTVSEKEFTSFLFGEDGFSLIPEIQQ 135

Query: 122 SPLFHGKD-NKFSHDVFVSRLAREGINEKEYI--------DHYTKMLSRTDVVGMFVGGM 172
           +  F   +  +F+       +  +  +             +       +         G 
Sbjct: 136 N--FSDPNTGQFNAAQLTKYIEEQEKSTDATAVANWKKTKEAIRNQRMQEKYFQFLGQGA 193

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKD--NYRAPEY 229
             + L          E++S+ ++V   R +       S+  +  ++EK K+   Y+    
Sbjct: 194 YVTKLEAKNEYLAKNESKSISFVVGQFREIKDEDVKVSDKEIRDYYEKNKEKPKYQVMAG 253

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           + + +    +   +  I+  N E++      K  + +    ++  L         E  + 
Sbjct: 254 RDVKFFDIAIEPSKSDIDTFNLEMKKI----KTAFAASTNDSLFILQNS------ELPRM 303

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
              G    QL                +++ +      D++F  A  G             
Sbjct: 304 YASGN---QLTFRPEGDAK-------ARQGMTYPVAMDTVFKTATVGQIVGPYDDKGKTR 353

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           IA V     +                         + D K++     L  S+ ++     
Sbjct: 354 IAKVLGFNSTVLK-------------ARHILINAPEGDAKKVASAKKLADSLVKLVNNAN 400

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWVQI 468
                    +  G   KG         E +  F  F  + P+     V    G +  +++
Sbjct: 401 FAEFVTKYSEDQGSKEKGGVYEDFMDYEMVEPFSKFAMEKPIGTIGVVKTQFG-FHIMEV 459

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN----------FR 518
            +        +  V+        +  T  ++  KA  L+ +  +E +           F 
Sbjct: 460 MDRKAGSKFPVLAVVEK--TMLPSEDTKADLKDKAYTLLAKLDRELEKKSDITDKVILFD 517

Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF------SGPVEMVKCFPIENGLSYV 572
            I +  G         +       F     I  +          V  +   PI++    V
Sbjct: 518 TIARKAGYYSRPLRMFDESPKVQGFVTKMAIQTILELAYNDEAKVGDMCSAPIQDDKRLV 577

Query: 573 VFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
           +  V++ +    +   + +    +M    + +     +  +     +  ++ + L  E
Sbjct: 578 IAMVSSIR---EKGVPQLVDVYERMRTDAMNEKRANKILKKIGSVTNLEVLAKKLKTE 632


>gi|254522723|ref|ZP_05134778.1| chaperone SurA [Stenotrophomonas sp. SKA14]
 gi|219720314|gb|EED38839.1| chaperone SurA [Stenotrophomonas sp. SKA14]
          Length = 447

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/407 (10%), Positives = 108/407 (26%), Gaps = 70/407 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    +  S    +        + +   +   +      L +++L+ LV     
Sbjct: 33  DRIAAVVDEDVILQSELQRAIANIKAQYAGRENQLPPEDV-----LSRQVLERLVLVKLQ 87

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +  G+      +   +        + N  + D    RLA +GI+  ++       +
Sbjct: 88  VARAQSSGIRVGDQELNQAMNAI----AQQNGSTLDALRQRLAHDGIDFNDFRASVRDEI 143

Query: 160 SRTDVVGMFVGG-MRPSNLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPS----N 210
           +   +   F    +  S   +D    Q      +      +V       A    +     
Sbjct: 144 TVQRLRQSFAQSRISVSEGEVDAALKQQATVGNQYHLAHILVALPDGANADQIATGQKKA 203

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEI 269
             +    +K + ++ A     + Y       +   +   S DE+   + +  EK    E+
Sbjct: 204 DGVKALLDKGELDFNA---AAVRYSDSPNALEGGDLGWRSLDEIPQAFAQMMEKMKPGEV 260

Query: 270 ------------------RTVE--------------QLVF---------PNQKEADEAFQ 288
                             R                  ++            + + D    
Sbjct: 261 VGPIRGPSGFQLLKLVDVRDASATAGANTVTEYHGRHILVRVDDHQTDAAAKAKIDTLRA 320

Query: 289 SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            +  G  F  +A+E  +  +       LG F  +     +    +  L + G  +     
Sbjct: 321 RIAGGADFETVAKESSEDNNSKGQGGDLGWFPADAF-GPAFGQQVSGL-QDGGVSQPFRT 378

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             G+ I      + +   +    +  +   +   K  ++     + L
Sbjct: 379 DAGWHIVQRVATRQTDVTN-DNQRAQVRETIGRRKLEDEYNRFLQEL 424



 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 55/393 (13%), Positives = 119/393 (30%), Gaps = 51/393 (12%)

Query: 142 AREGINEKEYIDHY---TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
               +  ++ +        +L +  V      G+R  +  L+QA     +        L 
Sbjct: 63  RENQLPPEDVLSRQVLERLVLVKLQVARAQSSGIRVGDQELNQAMNAIAQQNGSTLDALR 122

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
            R      D ++             +RA     I+         + +I +S  E+ A  +
Sbjct: 123 QRLAHDGIDFND-------------FRASVRDEITVQRLRQSFAQSRISVSEGEVDAALK 169

Query: 259 KNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQSLKKGK-KFIQLA---EE 302
           +            +  ++               QK+AD     L KG+  F   A    +
Sbjct: 170 QQA---TVGNQYHLAHILVALPDGANADQIATGQKKADGVKALLDKGELDFNAAAVRYSD 226

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
              +L    LG  S + IP  + A  +  + K G+    I G  G+ +  + +++ +   
Sbjct: 227 SPNALEGGDLGWRSLDEIP-QAFAQMMEKM-KPGEVVGPIRGPSGFQLLKLVDVRDASAT 284

Query: 363 SFQEVKKD-----IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           +      +     I  ++   +     K     L   +A G   + +++     +     
Sbjct: 285 AGANTVTEYHGRHILVRVDDHQTDAAAKAKIDTLRARIAGGADFETVAKESSEDN----- 339

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
            +  G+        A  +      +V G  D            G ++  ++       D 
Sbjct: 340 -NSKGQGGDLGWFPADAFGPAFGQQVSGLQDG-GVSQPFRTDAGWHIVQRVA--TRQTDV 395

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
             +     V++     K  +E +    +L  E 
Sbjct: 396 TNDNQRAQVRETIGRRKLEDEYNRFLQELRGEA 428


>gi|251794109|ref|YP_003008840.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
 gi|247541735|gb|ACS98753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
          Length = 324

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 79/243 (32%), Gaps = 17/243 (6%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I  ++  +   +      +  M V           Q      E       +++      +
Sbjct: 73  ITAEDLAEQLKRQYGDNVLRTMMVHKAIDLEAEAQQLSLSSEEEERELTSMMDGYDSEEV 132

Query: 206 ADPSNAVLTQWFEKYKDNY---RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                     ++E  KD     ++   + + Y L         + +S  E++     + E
Sbjct: 133 ----------FYEVMKDQLGMTKSDVEEDVKYRLLLEKIAILTVNLSEVEIENYIAAHPE 182

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
           ++       V+ +V   +KEAD+    L  G  F QLA E  K  +    G        D
Sbjct: 183 QFADRLRLHVQWIVTDTEKEADDVLDKLTAGDSFEQLALEYSKDANTSDAGGDLGLIDSD 242

Query: 323 VSLADS----IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
               D+      S  + G+ T  I    GY +  V   + +  +S   +      ++ ++
Sbjct: 243 DPFYDAEMMEEASRLQTGESTGPIKVPEGYAVIRVLERQKTEGLSGHVLYDTARKELALS 302

Query: 379 KAS 381
           KA 
Sbjct: 303 KAK 305


>gi|311748699|ref|ZP_07722484.1| putative PPIC-type PPIASE domain protein [Algoriphagus sp. PR1]
 gi|126577231|gb|EAZ81479.1| putative PPIC-type PPIASE domain protein [Algoriphagus sp. PR1]
          Length = 666

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/359 (11%), Positives = 106/359 (29%), Gaps = 51/359 (14%)

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
           L+  ++     +   ++G++     +                   + +   L    + + 
Sbjct: 75  LNQFINYKLKVREAVELGMDESQEFLMEF----------------ESYKENLKAPYLIKN 118

Query: 150 EYID-HYTKMLSRTDVV---GMFVGGMRPSNLLLDQAKRFYFENRSVDYIV----LNNRH 201
              +    K  SR   V      +    P+    D         +  D I     +N   
Sbjct: 119 SLEEGELRKAYSRMQEVVRASHILFQFPPNASQEDSLSVLRMALKVKDQIENGGDINELA 178

Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE---YE 258
           +    DPS           K +       ++     D     +  ++S+  +        
Sbjct: 179 LEYSEDPSAKQ-------NKGDLGYFTALQMVQPFEDAAFSLQAGQVSDPVMTNFGYHII 231

Query: 259 KNKEKYFSPEIRTVEQLVF---PNQKEADEAFQSL---------KKGKKFIQLAEEQGKS 306
           K  +K  +P    V  ++     +   A++  +           K+   +  + +   + 
Sbjct: 232 KVLDKRPNPGQVRVSHILVRIDADDPNAEDLARRKVADIYTEIQKENTVWENIVKNYSED 291

Query: 307 LSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            +    G     +           + FSL + G+ +P +   +GY I  + + KP    S
Sbjct: 292 PASSQNGGMLPWFSVGSMIPEFEMAAFSLTEIGEVSPPVKTKYGYHILRLEDKKPID--S 349

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
           F+++++ I +++     S  ++     +++        +      +        +   G
Sbjct: 350 FEDLEESIRSRIMRDSRSTMIQSQVMAIQKSRYSFDENETSIGNLESELKTFTQIQLPG 408


>gi|121997086|ref|YP_001001873.1| NifZ family protein [Halorhodospira halophila SL1]
 gi|121588491|gb|ABM61071.1| NifZ family protein [Halorhodospira halophila SL1]
          Length = 321

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQSLKKGKK- 295
           ++++++  Y +N E++   E RTV  L+                  A++    L    + 
Sbjct: 152 TDEDVERFYHENPERFRRDETRTVRHLLITINDDFPENTRQRAWARAEKLTGKLAADPRG 211

Query: 296 FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F   AE       +L    +G   +  + +  L  ++F +A  G+    +  + G  +  
Sbjct: 212 FAAAAERHSECPSALHGGLVGRVPRGQLHE-ELDAALFEMA-AGEVRGPVETAMGLHVLL 269

Query: 353 VSNIKPSFTVSF-QEVKKDIANQMRITKASEKVKEDY 388
              I P        E+++ I   ++  +A +  ++  
Sbjct: 270 CETIHPPDVAPLDDELRERIRGALQEQRARQVQRDRA 306


>gi|282851249|ref|ZP_06260614.1| PPIC-type PPIASE domain protein [Lactobacillus gasseri 224-1]
 gi|282557217|gb|EFB62814.1| PPIC-type PPIASE domain protein [Lactobacillus gasseri 224-1]
          Length = 303

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 17/228 (7%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
           G +  S       +    ++     IV +        + +   + + + KYK  Y +   
Sbjct: 41  GKITESQYYNKMKESQAGQSTLASMIVSDALESQYGKEVTQKQVDKEYNKYKKQYGSQFD 100

Query: 230 KRISYILFDVHEKEKKIE---ISNDELQA------EYEKNKEKYFSPEIRTVEQLVFPNQ 280
             +          +  ++   ++   L+         EK   K + PE+ TV+ ++   +
Sbjct: 101 SVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQEKKAWKNYQPEV-TVQHILVSKK 159

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF-SKEYIPDVSLADSIFSLAKK 335
             A++  + LK G  F +LA++             L +F S +   D S   + F L   
Sbjct: 160 STAEDIIKQLKDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTG 219

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              T  +   +GY +  +  IK     + +E KK I NQ+  + + ++
Sbjct: 220 EITTTPVKTQYGYHVIKM--IKHPAKGTLKEHKKQIDNQIYQSMSEDQ 265



 Score = 45.8 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 23/174 (13%)

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVK----TAEEVSSK--ANQLVLEYSKEGKNFRDI 520
            IK+  PA+++          K WK  +        + SK    + +++  K+G +F+ +
Sbjct: 129 HIKKITPAQEK----------KAWKNYQPEVTVQHILVSKKSTAEDIIKQLKDGGDFKKL 178

Query: 521 GKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
            K       T N    +   D+ +        +  F      +   P++    Y V K+ 
Sbjct: 179 AKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGEITTTPVKTQYGYHVIKMI 238

Query: 578 N--SKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627
              +K    + K +  + + Q M++D  ++ SVIA +  +  V++ D  ++  L
Sbjct: 239 KHPAKGTLKEHKKQIDNQIYQSMSEDQSVMRSVIATVLKRADVSIKDKDLKNVL 292


>gi|196232957|ref|ZP_03131806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
           flavus Ellin428]
 gi|196222935|gb|EDY17456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
           flavus Ellin428]
          Length = 136

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 6/109 (5%)

Query: 290 LKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           +KKG+ F +LA+E  +  S       L  F KE +     +++ F + KKG+ +  +   
Sbjct: 1   MKKGEDFGKLAQEISEDPSAKENKGDLDFFRKEAMV-PEFSNAAFGM-KKGEISDPVRSD 58

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           FG+ +  V++ K + TV+ ++ K  +   ++  K    V+E  K + E 
Sbjct: 59  FGFHVIKVTDRKDAETVTLEKAKPQLLAFLKNQKKQAAVEEVIKGVREK 107


>gi|325270105|ref|ZP_08136712.1| peptidyl-prolyl cis-trans isomerase [Prevotella multiformis DSM
           16608]
 gi|324987406|gb|EGC19382.1| peptidyl-prolyl cis-trans isomerase [Prevotella multiformis DSM
           16608]
          Length = 715

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 119/374 (31%), Gaps = 38/374 (10%)

Query: 262 EKYFSPEIRTVEQLVFPN------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
            K   P+     Q+          + +AD   ++L  G  F  LA+  G++        F
Sbjct: 353 SKAQLPDSVQFRQIQVAANTPDEARAKADSIQKALAGGADFEALAKRYGQT---GEKVWF 409

Query: 316 SKEYIPDVSLADS-----IFSLAKKGDFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVK 368
           + +               I +L   GD     + +   G VI  V + K     +   V 
Sbjct: 410 TGQQYESAPTMSQDNRTYINALL-NGDVNATQNIALAQGNVILQVLDKKAMTAKTTAAV- 467

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
             I   +  +KA+  V   Y +  EF+A  T+ D+I +        +  ++         
Sbjct: 468 --IKKVIDFSKATRSV--AYNKFSEFVAKNTTADDIEKNASKSGYRVQSLNDISTAEHY- 522

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
            VA I      L  +F               +   + + +    P   R  ++    VK+
Sbjct: 523 -VAGIHGTRDALKWLFDAKQGDVSPLYECGDNDHLLVIVLNAIHPQGFRAWDD--AQVKE 579

Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENKFF 544
             K     E +  K  +L++   K G +     +  GA + T NQI              
Sbjct: 580 ILKR----EVMKDKKAELLMAKLK-GVSSIAAARAKGAKVSTVNQITFASPAFVQATGAV 634

Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS--KVGPVQEKDKFISYLTQMMNKDL 602
                  V +         P++      VF+V     + G    +   +    Q   + +
Sbjct: 635 EPALSGAVAATAAGKFSKAPVKGNAGVYVFQVVKKAMRAGSKCNELMVMQQTAQQNMQ-M 693

Query: 603 LDSVIAYLKSQYSV 616
           + + +  L  + +V
Sbjct: 694 VGNFMQDLILKANV 707



 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 82/640 (12%), Positives = 188/640 (29%), Gaps = 81/640 (12%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG-----SSTVVSVGRQKVPFSSF 56
           L  IR  S+  +    + +    FL     +   S +G        +  +  +K+    +
Sbjct: 4   LGKIR--SKGGLLVTAIGLALFAFL---AEEGFRSCNGIKGEARQQIGEILGEKISVQDY 58

Query: 57  INSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
                +    I        ++ E      +  ++   LVS   L    E +GL      +
Sbjct: 59  QKLIDEYQSAIKFTMQRDNLSEEELNQ--VKDQVWQQLVSNRVLQADAEKVGLTVTEQEI 116

Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
                      +A++P  + +  +F  +     L   G ++ +                 
Sbjct: 117 QNVLNDGTNPMLAQTPFVNQQTGRFDVNALKQFLD--GYSKAKSEKS-----------PQ 163

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
                   +  L   K    +     Y  L    V +           + +         
Sbjct: 164 LDQMQTVYDYWLFIEKNLRTQLLGQKYQALLASCVLSNKA---EAKMAFKDNN------- 213

Query: 228 EYKRISYILFDVHEKEK-KIEISNDELQAEYEKNKEKYFSP-EIRTVE----QLVFPNQ- 280
           E  ++          +   I+I++ +L+A+Y++ K  +    E R ++    Q+      
Sbjct: 214 EESQVQLASLSYSSVKDADIKITDADLKAKYDELKPAFRQNVETRDIKFVDYQIKASTAD 273

Query: 281 -----KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
                KE +   + L        +  + G  +  + +   SK Y     +A  I SLA  
Sbjct: 274 RNAVVKEMNGLQKQLAAAADPAMVISKSGSEIPYLGVPVSSKAYRQYPDIASRIDSLAVG 333

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
                         I  V +   +                      ++ +     +++ L
Sbjct: 334 TTGVTENKQDNTLNIIRVLS--KAQLPD----SVQFRQIQVAANTPDEARAKADSIQKAL 387

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           A G   + +++R       +       +           Y   LL      +  ++    
Sbjct: 388 AGGADFEALAKRYGQTGEKVWFTGQQYESAPTMSQDNRTYINALL------NGDVNATQN 441

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           +AL  G+ + +Q+ +      +    V+  V         ++   S A     E+  +  
Sbjct: 442 IALAQGN-VILQVLDKKAMTAKTTAAVIKKVIDF------SKATRSVAYNKFSEFVAKNT 494

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFG-----YDGISQVFSGPVEMVKCFPIENGLS 570
              DI KN   S      +N +     +        D +  +F      V          
Sbjct: 495 TADDIEKNASKSGYRVQSLNDISTAEHYVAGIHGTRDALKWLFDAKQGDVSPLYECGDND 554

Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
           +++  V N+ + P   +    + + +++ ++++    A L
Sbjct: 555 HLLVIVLNA-IHPQGFRAWDDAQVKEILKREVMKDKKAEL 593


>gi|302345884|ref|YP_003814237.1| PPIC-type PPIASE domain protein [Prevotella melaninogenica ATCC
           25845]
 gi|302149581|gb|ADK95843.1| PPIC-type PPIASE domain protein [Prevotella melaninogenica ATCC
           25845]
          Length = 474

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 69/192 (35%), Gaps = 21/192 (10%)

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY-EKNKEKYFSPEIRT 271
           +    + + D   + + + +SY    V            E +  Y E  ++   +  +  
Sbjct: 70  VQAALDAHLDTLSSFKKEFLSYRNQQVRPTFITDADVEAEGRKLYREAQQQVEANGGMWN 129

Query: 272 VEQLVF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----F 315
              ++               ++ AD  + +L+ G  F +LA++    ++    G      
Sbjct: 130 CAHILIGLYQNADKEAAEAAKQLADSLYNALRGGADFAELAKKYSTDVNSAMNGGQLLHL 189

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            K          ++F+L K G+ +  +   FGY I  +   +     +++ ++ +I   +
Sbjct: 190 QKGQTV-PEFEKALFAL-KPGEISAPVLSPFGYHIIKMGGRE--SFPTYETLRPEIMQYI 245

Query: 376 RITKASEKVKED 387
            +    E++ + 
Sbjct: 246 EMQGLREQIIDQ 257


>gi|193083971|gb|ACF09646.1| peptidyl-prolyl cis-trans isomerase ppiC [uncultured marine
           crenarchaeote AD1000-56-E4]
          Length = 91

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSI 329
             ++   Q +A +  + +KKGKKF  +A E      S  D  LG F+K  +      +  
Sbjct: 8   SHILVEKQSQALQLLEEIKKGKKFGAVAREVSTCPSSKKDGDLGYFTKGMMVK-EFDEVA 66

Query: 330 FSLAKKGDFTPVIHGSFGYVIAH 352
           F L + G+ +  +   FGY +  
Sbjct: 67  FKL-QIGEVSEPVKTQFGYHLIK 88


>gi|262403929|ref|ZP_06080486.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC586]
 gi|262349891|gb|EEY99027.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC586]
          Length = 431

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S  V V    +  S   ++ K       Q           +   L +++L+ L+     
Sbjct: 28  DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG++ D  R+   I        K+N+ + +  ++ +A+EG+   E+        
Sbjct: 83  QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  +          + L+  +      E  ++  ++         A  ++A +      
Sbjct: 131 -REQIRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      +IS+I   V + + K                                  
Sbjct: 176 ----------YKISHIQLRVDDGQDKS-------------------------------AA 194

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  A++    LK G  F Q+A    K   +L     G   KE +P    AD I  +  KG
Sbjct: 195 ETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389
                     G+ I  + ++K   TV+  EV       K  I   +    A +++ E  +
Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310

Query: 390 RLEEFLALGTSMDEISRRE 408
           R++       +  E++++ 
Sbjct: 311 RIKN---GEVTFAELAQQY 326


>gi|332305313|ref|YP_004433164.1| SurA domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172642|gb|AEE21896.1| SurA domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 431

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 125/362 (34%), Gaps = 62/362 (17%)

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
           L  + ++ L+  +   Q  + +G++    ++   I        +++  + +     LA E
Sbjct: 66  LRTQAIERLIVDSLQSQMADRMGIQISDPQLDQTIDNI----AREDGTTVEQLRQSLASE 121

Query: 145 GINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN--RSVDYIVLNNRH 201
           G++ + Y +   K L   +V        +  +   +    +   E   +  +Y  L +  
Sbjct: 122 GVSFEVYREQVRKELISGEVRRANVRRRIYITPQEISNLVKLIDEQGGQQAEYH-LGHIL 180

Query: 202 VPAIADPSNAVLTQWFE---------KYKDNY-----------RAPEYKRISYILFDVHE 241
           +    +P++A +++  +              +           +A E   + ++  +   
Sbjct: 181 IGFPPEPTDADVSKAKDTAEKVLELLNNGSEFAKIATASSSGSKALEGGDLGWMNINSMP 240

Query: 242 KEKKIEI---SNDEL------------QAEYEKNKEKYFSPEIRTVEQLVFP-----NQK 281
                 +   S D+L                +    +           ++       + +
Sbjct: 241 TLFAEAVQGTSKDDLIGPIRSGAGFHVLKIIDIRGIEKVEVAELKSRHILIKPSVILSDE 300

Query: 282 EADEAF-----QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
           +A++       Q L     F +LA+E     G +L    LG  +   +   +  D++  L
Sbjct: 301 KAEKMLIEFRKQLLAGEADFAELAKEHSADPGSALRGGDLGW-ADPNVYVPAFRDTLQKL 359

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYKRL 391
            + G+ +  +  + G+ +  + + +       ++ K+D A Q+   +  +E+ +   K +
Sbjct: 360 -EVGEISQPVRSTHGWHLMQLMDKRVQDAT--EKRKEDKAYQLLFQRKFAEETEAWLKEM 416

Query: 392 EE 393
            +
Sbjct: 417 RD 418



 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 81/244 (33%), Gaps = 28/244 (11%)

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------ 277
           YR    K +           ++I I+  E+    +   E+        +  ++       
Sbjct: 128 YREQVRKELISGEVRRANVRRRIYITPQEISNLVKLIDEQGGQQAEYHLGHILIGFPPEP 187

Query: 278 ------PNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
                   +  A++  + L  G +F ++A       K+L    LG  +   +P    A++
Sbjct: 188 TDADVSKAKDTAEKVLELLNNGSEFAKIATASSSGSKALEGGDLGWMNINSMP-TLFAEA 246

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEK 383
           +   +K  D    I    G+ +  + +I+    V   E+K     I     +   KA + 
Sbjct: 247 VQGTSKD-DLIGPIRSGAGFHVLKIIDIRGIEKVEVAELKSRHILIKPSVILSDEKAEKM 305

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           + E  K+L   LA      E+++     S D       G          +P     L ++
Sbjct: 306 LIEFRKQL---LAGEADFAELAKEH---SADPGSALRGGDLGWADPNVYVPAFRDTLQKL 359

Query: 444 FGKD 447
              +
Sbjct: 360 EVGE 363


>gi|260592565|ref|ZP_05858023.1| peptidyl-prolyl cis-trans isomerase [Prevotella veroralis F0319]
 gi|260535611|gb|EEX18228.1| peptidyl-prolyl cis-trans isomerase [Prevotella veroralis F0319]
          Length = 715

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 84/661 (12%), Positives = 198/661 (29%), Gaps = 83/661 (12%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG-----SSTVVSVGRQKVPFSSF 56
           L  IR  S+  +    + +    FL     +A  S +G        +  +  +K+    +
Sbjct: 4   LGKIR--SKGGILVAAIGLALFAFL---AEEAFRSCNGIKSETRQQIGEILGEKISVQDY 58

Query: 57  INSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
                +    I        +         +  ++   LV+   L+   + +GL      +
Sbjct: 59  QKLIDEYQSAIKFTMQRDNLTENELNQ--VKDQVWQQLVNNRVLEADAKKVGLTVTEQEL 116

Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
                      +A++P  + +  +F  +     L   G N+ +     +  L +   +  
Sbjct: 117 SNVLNDGTNPMLAQTPFVNQQTGRFDINALQQFLD--GYNKAK--ASNSPQLEQMQTIY- 171

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
                   +  L   K    +     Y  L    V +           + +         
Sbjct: 172 --------DYWLFVEKNLRTQLLGQKYQALLASCVLSNKA---EAKMAFKDNN------- 213

Query: 228 EYKRISYILFDVHEKEK-KIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEA-- 283
           E   I          +   +++++++L+A+YE+ K  +    E R ++ + +  +  A  
Sbjct: 214 EESEIQLASLAYSTIKDADVKVTDEDLKAKYEELKPAFRQNTETRDIKFVDYQIKASASD 273

Query: 284 --------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
                   +   + L        +  + G  +  + L   SK Y     +A  I SLA  
Sbjct: 274 RNAIVKDMNALQKQLATATDPSMVISKSGSMIPYLGLPVSSKAYQQYPDIASKIDSLAVG 333

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
                         I  V +   +                      E+       +++ L
Sbjct: 334 TTGVTENKQDNTLNIIRVMS--KAQLPD----SVQFRQIQVAANTPEEAHAKADSIQKAL 387

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           A G     I++R       +       +           Y E LL      +  ++    
Sbjct: 388 AGGADFVAIAKRYGQTGEKVWFTGQQYEVAPSMSEDNRTYIEALL------NGEVNAIQN 441

Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           VAL  G+ + +Q+ +    + +    ++  +    K  ++     +K ++ V + +    
Sbjct: 442 VALTQGNII-LQVVDKKAMKTKTTAAIIKKLIDFSKATRSD--AYNKFSEFVAKSATA-A 497

Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFF--GYDGISQVFSGPVEMVKCF---PIENGLS 570
           +        G  + + N ++  ++         D +  +F      V         + L 
Sbjct: 498 DLEKNASKYGYHVQSLNDVSTSEHYVAGVHGTRDALKWLFDAKQGDVSPLYECGDNDHLM 557

Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL-DSVIAYLKSQYSVTVHDNLIQRYLDG 629
            +V    + K     +  +    L + + KD   + ++A LK      V+     +    
Sbjct: 558 VIVLSAIHPKGYRSWDDPQVKEILKREVIKDKKAEKLMAKLKG-----VNSIAAAQAKGA 612

Query: 630 E 630
           +
Sbjct: 613 K 613



 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 106/330 (32%), Gaps = 27/330 (8%)

Query: 262 EKYFSPEIRTVEQLVFPNQ------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
            K   P+     Q+            +AD   ++L  G  F+ +A+  G++   +     
Sbjct: 353 SKAQLPDSVQFRQIQVAANTPEEAHAKADSIQKALAGGADFVAIAKRYGQTGEKVWFTGQ 412

Query: 316 SKEYIPDVSLADSIF-SLAKKGDFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIA 372
             E  P +S  +  +      G+   + + +   G +I  V + K   T +   +   I 
Sbjct: 413 QYEVAPSMSEDNRTYIEALLNGEVNAIQNVALTQGNIILQVVDKKAMKTKTTAAI---IK 469

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
             +  +KA+    + Y +  EF+A   +  ++ +        +  ++          VA 
Sbjct: 470 KLIDFSKATR--SDAYNKFSEFVAKSATAADLEKNASKYGYHVQSLNDVSTSEHY--VAG 525

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
           +      L  +F               +   M + +    P   R  ++    VK+  K 
Sbjct: 526 VHGTRDALKWLFDAKQGDVSPLYECGDNDHLMVIVLSAIHPKGYRSWDD--PQVKEILKR 583

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENKFFGYDG 548
               +    KA +L+ +   +G N     +  GA + T +QI                  
Sbjct: 584 EVIKD---KKAEKLMAKL--KGVNSIAAAQAKGAKVSTVSQITFAAPAFVQATGSAEPAL 638

Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
              V +         P++      VF+V  
Sbjct: 639 SGAVAATAAGKFSKNPVKGNAGVYVFQVVK 668


>gi|284035739|ref|YP_003385669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
 gi|283815032|gb|ADB36870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
          Length = 797

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 86/275 (31%), Gaps = 25/275 (9%)

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV-- 192
           + +  +LA+  + +K  ++       +     +    +        Q        +++  
Sbjct: 98  NTYRKQLAQSYLTDKVLVESLAAEAYQRMQEDVNASHIFIPVSEYAQPSDTLVAYQTIMS 157

Query: 193 -DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS-N 250
                L       +A  ++  +     +   +          Y L           IS  
Sbjct: 158 LRKQALEGTDFTKLARENSKDVKT--AQNGGSLGYIAAFENVYPLETAAYTTPVNGISMP 215

Query: 251 DELQAEYEKNKEKYFSP--EIRTVEQLVFPNQKEADEA------------FQSLKKGKKF 296
              +  Y   K     P      V  ++      ADEA            +  L++G+ F
Sbjct: 216 VRTRFGYHILKVNNRRPSRGRVRVAHILVRMSPAADEAGQKAAQERINKVYAQLQRGESF 275

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            Q+        +  + G     + P     +  D+ F+L+K GD++  +  ++G+ I  +
Sbjct: 276 EQVCRLVSDDATSKANGGVLPPFEPGRWVPAFEDAAFALSKPGDYSKPVKTNYGWHIIKL 335

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
              K     SF  +   +  ++     ++ +++  
Sbjct: 336 IERK--GLESFTTLAPSLRQRVTTDSRADMLRQVT 368



 Score = 38.4 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 54/173 (31%), Gaps = 11/173 (6%)

Query: 462 SYMWVQIKESIPARDRKLEEVLTD---VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
            Y  +++    P+R R    V      V+      +  ++ + +    V    + G++F 
Sbjct: 221 GYHILKVNNRRPSRGR----VRVAHILVRMSPAADEAGQKAAQERINKVYAQLQRGESFE 276

Query: 519 DIGKNLGASLLTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
            + + +     +      +   E   +        F+         P++    + + K+ 
Sbjct: 277 QVCRLVSDDATSKANGGVLPPFEPGRWVPAFEDAAFALSKPGDYSKPVKTNYGWHIIKLI 336

Query: 578 NSKVGP--VQEKDKFISYLTQMMNKDLLDSV-IAYLKSQYSVTVHDNLIQRYL 627
             K               +T     D+L  V +  L+ +Y V     L+   +
Sbjct: 337 ERKGLESFTTLAPSLRQRVTTDSRADMLRQVTVQRLQKEYPVQTDQPLLAIAI 389


>gi|114776872|ref|ZP_01451915.1| Parvulin-like peptidyl-prolyl isomerase [Mariprofundus ferrooxydans
           PV-1]
 gi|114552958|gb|EAU55389.1| Parvulin-like peptidyl-prolyl isomerase [Mariprofundus ferrooxydans
           PV-1]
          Length = 92

 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++   + + +     ++ G  F ++A+E     S      LG F    +       
Sbjct: 5   TARHILVDTEAQCEALKAEIEGGADFAEVAKEHSSCPSGRNGGDLGEFGPGMMV-PEFDK 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +FS A+ G     +   FGY +  V++ 
Sbjct: 64  VVFS-AEVGTVQGPVKTQFGYHLLEVTSR 91


>gi|158423053|ref|YP_001524345.1| putative peptidyl-prolyl cis-trans isomerase [Azorhizobium
           caulinodans ORS 571]
 gi|158329942|dbj|BAF87427.1| putative peptidyl-prolyl cis-trans isomerase [Azorhizobium
           caulinodans ORS 571]
          Length = 304

 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 13/162 (8%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----- 282
           E +  + I   + ++ +  E     L+  Y+ N+ ++ S  +   E ++   ++E     
Sbjct: 108 ETEEEALIRALLAQEVRTPEADEAALRRFYDNNRRRFLSAPLWEAEHILCAARREDAVAF 167

Query: 283 ------ADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAK 334
                 A      L    ++F +LA  Q    S    GS  +    D +   ++      
Sbjct: 168 PAARERAQTLAAVLARAPERFAELARAQSDCPSAGVGGSLGQIGPGDTTPEFEAALKALT 227

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
            G  +  +   +G  +  V+      T+ F+ V+  IA  + 
Sbjct: 228 PGVISEPVETRYGVHLIRVNRHVDGRTLPFEAVRDQIAAYLA 269


>gi|299770418|ref|YP_003732444.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. DR1]
 gi|298700506|gb|ADI91071.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. DR1]
          Length = 436

 Score = 77.7 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/405 (11%), Positives = 117/405 (28%), Gaps = 69/405 (17%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           F+      V  V    +  S       +    +  +       E      L  ++LD L+
Sbjct: 26  FAQPADEVVAIVDNSVILKSDLQQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 80

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153
                 + ++  G++ D   +   + +      +    S + F  +L    +    Y   
Sbjct: 81  LREAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--MAPGTYESL 135

Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204
                + L+ + +     +  ++ S+  ++      Q +        V ++ +   +   
Sbjct: 136 RGRIAEDLAISRLRQQQVMSRIKISDQDVENFLKSPQGQAALGNQAHVIHMRITGDNPQE 195

Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242
           +   +  V ++  +    N                  +R     P             + 
Sbjct: 196 VQSVAQEVRSKLAQSNDINVLKKLSTANAKVDGADMGFRPLSDIPAELAARITPLQEGQT 255

Query: 243 EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
              I + +    L+    K  E+           ++            ++  D  ++ LK
Sbjct: 256 TDLISVRDGVHVLKLIERKQNEQKALVPQYQTRHILIQPSEVVSLDNAKQIIDNIYKRLK 315

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G  F  LA     + G +    SLG  +   +        +  +   G+ +      FG
Sbjct: 316 AGDDFATLAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFG 373

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + I  V+  +           KD+ ++ +   A + + E     E
Sbjct: 374 WHILQVTEKRE----------KDMTHEYQERMARQILGERQFNTE 408



 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 87/288 (30%), Gaps = 43/288 (14%)

Query: 143 REGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           ++G+ E   E      ++  +  +    +  +      L+Q K++       D   LN  
Sbjct: 48  QQGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILREAQLEQVKKYGI---KPDEKSLNEA 104

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKR---------ISYILFDVHEKEKKIEISND 251
            +   +   +  L  +  + K +  AP             ++       +   +I+IS+ 
Sbjct: 105 VLKVASQSGSKSLEAF--QQKLDAMAPGTYESLRGRIAEDLAISRLRQQQVMSRIKISDQ 162

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           +++   +  + +        V  +          Q  A E    L +      L ++   
Sbjct: 163 DVENFLKSPQGQAALGNQAHVIHMRITGDNPQEVQSVAQEVRSKLAQSNDINVL-KKLST 221

Query: 306 SLSDISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN--------- 355
           + + +         + D+    +   +  ++G  T +I    G  +  +           
Sbjct: 222 ANAKVDGADMGFRPLSDIPAELAARITPLQEGQTTDLISVRDGVHVLKLIERKQNEQKAL 281

Query: 356 ----------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                     I+PS  VS    K+ I N  +  KA +           
Sbjct: 282 VPQYQTRHILIQPSEVVSLDNAKQIIDNIYKRLKAGDDFATLAATYSN 329


>gi|153217229|ref|ZP_01950993.1| survival protein SurA [Vibrio cholerae 1587]
 gi|153830824|ref|ZP_01983491.1| survival protein SurA [Vibrio cholerae 623-39]
 gi|229519985|ref|ZP_04409414.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TM
           11079-80]
 gi|229525138|ref|ZP_04414543.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae bv.
           albensis VL426]
 gi|124113752|gb|EAY32572.1| survival protein SurA [Vibrio cholerae 1587]
 gi|148873683|gb|EDL71818.1| survival protein SurA [Vibrio cholerae 623-39]
 gi|229338719|gb|EEO03736.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae bv.
           albensis VL426]
 gi|229342934|gb|EEO07923.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TM
           11079-80]
          Length = 431

 Score = 77.7 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S  V V    +  S   ++ K       Q           +   L +++L+ L+     
Sbjct: 28  DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG++ D  R+   I        K+N+ + +  ++ +A+EG+   E+        
Sbjct: 83  QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  V          + L+  +      E  ++  ++         A  ++A +      
Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      +IS+I   V + + K                                  
Sbjct: 176 ----------YKISHIQLRVDDGQDKS-------------------------------AA 194

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  A++    LK G  F Q+A    K   +L     G   KE +P    AD I  +  KG
Sbjct: 195 ETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389
                     G+ I  + ++K   TV+  EV       K  I   +    A +++ E  +
Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310

Query: 390 RLEEFLALGTSMDEISRRE 408
           R++       +  E++++ 
Sbjct: 311 RIKN---GEVTFAELAQQY 326


>gi|125972872|ref|YP_001036782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum ATCC 27405]
 gi|256005741|ref|ZP_05430696.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 2360]
 gi|281417071|ref|ZP_06248091.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|125713097|gb|ABN51589.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum ATCC 27405]
 gi|255990314|gb|EEU00441.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 2360]
 gi|281408473|gb|EFB38731.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|316940891|gb|ADU74925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 1313]
          Length = 463

 Score = 77.7 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 114/306 (37%), Gaps = 37/306 (12%)

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q  ++ G +A   ++ G    + +   + NKF  + +        +N+ E  D     + 
Sbjct: 38  QESKEFGFQA--LKINGTYVSTDIMKEERNKFF-EKYKRNADVLRMNDHERNDMLLDQVI 94

Query: 161 RTDVVGMFVG---GMRPSNLLLDQAKRFYFENRSVDYI-VLNNRHVPAIADPSNAVLTQW 216
              ++  +V    G+  ++  ++     + + R  D +    +       +   A + ++
Sbjct: 95  ERLLLEDYVNNKSGVTATDSEVEDYINRFIKPRYGDSLGTFMSSQGYTNEEEMKAGIKEY 154

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
             K+K  Y+                KEK + ++  EL   YEK+K +    +IR +    
Sbjct: 155 ILKHKALYK--------------AAKEKNVTLTEQELDEGYEKHKIQNKKVDIRHIFISS 200

Query: 277 -----FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS---KEYIPDVSLADS 328
                   +K ADE +  LK  + F  LA++          G      +    +    ++
Sbjct: 201 QERGKEEAKKLADEIYNRLKNNEDFETLAKQYSDDEKTKESGGVITELRAGFNEAVFDNA 260

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK--ASEKVKE 386
           +F+ A+ G     I  + GY I +V  +       F   + + A  + + K   S+  KE
Sbjct: 261 VFT-AEAGQLLEPIEVARGYEIVYVDKVT-----DFYRTRDEYAELLTVDKFMQSDAYKE 314

Query: 387 DYKRLE 392
            ++  +
Sbjct: 315 WFEEYK 320


>gi|90424410|ref|YP_532780.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
 gi|90106424|gb|ABD88461.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
          Length = 347

 Score = 77.7 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 17/166 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E   +   L              DELQ  Y+ N+     P    + Q+     K+AD+A 
Sbjct: 153 ESALVELYLQSASTPPTNFP-GEDELQKVYDANRSALLVPRQFQLAQIFVAAPKDADKAT 211

Query: 288 QSLKK-------------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           +                 G  F  +A E     +   LG  ++  I    +   +  +AK
Sbjct: 212 EDNANKSLNEIQRQLKTPGADFAAIANENDGK-NSGDLGWLAENQI-RPEIRAQLMGMAK 269

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
               +  +    G+ I  + + K ++T +  EV+  +  QMR  +A
Sbjct: 270 N-AISDPVRLDDGWHILKLIDTKAAYTRTLPEVRDQLIQQMRAERA 314


>gi|268597648|ref|ZP_06131815.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA19]
 gi|268551436|gb|EEZ46455.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA19]
          Length = 333

 Score = 77.7 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 31/221 (14%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     +       +P  +R     I           +   +S  E+ A  E+
Sbjct: 118 IQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 177

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA    
Sbjct: 178 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYDQARNGTDFTGLARRYS 237

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 238 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 295

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
                 ++ I N +R     +K  +    L   L  G  +D
Sbjct: 296 P-----EERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVD 331


>gi|186475166|ref|YP_001856636.1| SurA domain-containing protein [Burkholderia phymatum STM815]
 gi|184191625|gb|ACC69590.1| SurA domain protein [Burkholderia phymatum STM815]
          Length = 463

 Score = 77.7 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/415 (11%), Positives = 119/415 (28%), Gaps = 76/415 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            +    V    +               ++Q+   +  +++     L +++L+ +V     
Sbjct: 43  DTIAAVVNNGVITQRELDMRVGLITKRLNQQHAPIPPADQ-----LRQQVLNQMVLERIQ 97

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q   + G+  D   V   + R      + N    D++ +R+  +G+    ++      L
Sbjct: 98  LQKAREDGITVDDATVQRTLERL----AQANNLQLDMYRARIEAQGVPWTTFMGDAKTEL 153

Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENR----------SVDYIVLNNRHVPAIADP 208
             + +    V   +  S+  +     +    R           +++I L      +  D 
Sbjct: 154 ILSRLREKEVDSKVTVSDAEV---ANYIASQRGPTAGLASDLHLEHIFLKAPLNASQTDI 210

Query: 209 SNAVLTQ---------------WFEKYKDN----------YRAPEYKRISYILFDVHEKE 243
             A                     +               ++AP      ++      + 
Sbjct: 211 EAAQAKANALLQEALKGDNFGKLAKSNSQAPDASKGGDLGFQAPSRLPAEFVTAAATLRP 270

Query: 244 KKIEISNDELQAEYE-----KNKEKYFSPE-------IRTVEQLVF---------PNQKE 282
            ++  S       +E     + +    S            V  ++            +++
Sbjct: 271 GQVNPSVIRTNDGFEIVRLVERRSGQGSASADSTKLVQTHVRHILLRVGDGMSEPQARQK 330

Query: 283 ADEAFQSLKKGK-KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
             E  Q ++ G+  F + A    + G +     LG  S           ++ SL +    
Sbjct: 331 LLEIRQEIEAGQGDFDKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNSL-QDNQI 388

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           +  +   +GY +  V   + +   S  +        +   KA +   +  + L +
Sbjct: 389 SQPVRSEYGYHLIQVLGRREAEG-SVSQQMDLARQAIGQRKAEQAYADWLRELRD 442



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 86/296 (29%), Gaps = 45/296 (15%)

Query: 152 IDHYTKMLSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
            D   + +    V+        R   + +D A       R      L      A      
Sbjct: 80  ADQLRQQVLNQMVLERIQLQKAREDGITVDDATVQRTLERLAQANNLQLDMYRARI---E 136

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY-EKNKEKYFSPEI 269
           A    W       +       +        E + K+ +S+ E+      +          
Sbjct: 137 AQGVPW-----TTFMGDAKTELILSRLREKEVDSKVTVSDAEVANYIASQRGPTAGLASD 191

Query: 270 RTVEQL------------VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGS 314
             +E +            +   Q +A+   Q   KG  F +LA+   ++        LG 
Sbjct: 192 LHLEHIFLKAPLNASQTDIEAAQAKANALLQEALKGDNFGKLAKSNSQAPDASKGGDLGF 251

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
            +   +P      +  +L + G   P VI  + G+ I  +   +     +  +  K +  
Sbjct: 252 QAPSRLP-AEFVTAAATL-RPGQVNPSVIRTNDGFEIVRLVERRSGQGSASADSTKLVQT 309

Query: 374 QMR-----------ITKASEKVKEDYKRLE------EFLALGTSMDEISRREKIVS 412
            +R             +A +K+ E  + +E      +  A   S D  + +   + 
Sbjct: 310 HVRHILLRVGDGMSEPQARQKLLEIRQEIEAGQGDFDKFARTYSQDGSASQGGDLG 365


>gi|325139171|gb|EGC61717.1| PPIC-type PPIASE domain protein [Neisseria meningitidis ES14902]
          Length = 408

 Score = 77.7 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/356 (10%), Positives = 98/356 (27%), Gaps = 90/356 (25%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                     + +       +  +    + +         +     L +++L  LV+ + 
Sbjct: 131 SDGIAAVADNEVITRRRLAEAVSEAKANLPK-------DAQISESELSRQVLMQLVNQSL 183

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  +   ++A    +   +A++P                      ++  +  D    +
Sbjct: 184 IVQAGKRRNIQASEAEIDAVVAKNPALKN------------------LSPAQRRDFADNI 225

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           ++        +   R S   +D                L       I  P  A L Q+  
Sbjct: 226 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 271

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           ++               +    + E     +   ++  Y                     
Sbjct: 272 QH---------------ILIKADSENAAVGAESTIRKIY--------------------- 295

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
                       + G  F  LA +  +  S      LG F+   +   +  +++ +L K 
Sbjct: 296 ---------GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 344

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G     +   FG+ I  ++ ++ + T   + ++  +   +   KA +      + L
Sbjct: 345 GQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 399


>gi|325131574|gb|EGC54281.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis M6190]
          Length = 405

 Score = 77.7 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/356 (10%), Positives = 98/356 (27%), Gaps = 90/356 (25%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
                     + +       +  +    + +         +     L +++L  LV+ + 
Sbjct: 128 SDGIAAVADNEVITRRRLAEAVSEAKANLPK-------DAQISESELSRQVLMQLVNQSL 180

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  +   ++A    +   +A++P                      ++  +  D    +
Sbjct: 181 IVQAGKRRNIQASEAEIDAVVAKNPALKN------------------LSPAQRRDFADNI 222

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           ++        +   R S   +D                L       I  P  A L Q+  
Sbjct: 223 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 268

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           ++               +    + E     +   ++  Y                     
Sbjct: 269 QH---------------ILIKADSENAAVGAESTIRKIY--------------------- 292

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
                       + G  F  LA +  +  S      LG F+   +   +  +++ +L K 
Sbjct: 293 ---------GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 341

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G     +   FG+ I  ++ ++ + T   + ++  +   +   KA +      + L
Sbjct: 342 GQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 396


>gi|226941162|ref|YP_002796236.1| peptidyl-prolyl cis-trans isomerase [Laribacter hongkongensis
           HLHK9]
 gi|226716089|gb|ACO75227.1| Probable peptidyl-prolyl cis-trans isomerase [Laribacter
           hongkongensis HLHK9]
          Length = 243

 Score = 77.7 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 17/161 (10%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------ADEAFQSLKKGKK-FI 297
           +    +  Y+   E++   E      ++FP   +          A+     ++     F 
Sbjct: 74  TEATCREFYDTYPERFSQGESAVASHILFPLGDDELAKVVMRGKAEGVLAEVQAEPSRFA 133

Query: 298 QLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHV 353
            LA       S     SLG F +  +      D++FS    G+ TP ++   FG+ I  V
Sbjct: 134 DLARVHSTCPSGREGGSLGEFGRGQMVKP-FEDAVFS-TPAGEITPQLVETQFGFHIIQV 191

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            +      V+F ++K+ +   +    A + + E    L + 
Sbjct: 192 QDRTQGGAVAFDDIKERLQQYLTDLAARQAMHEYLSGLVDA 232


>gi|153827415|ref|ZP_01980082.1| survival protein SurA [Vibrio cholerae MZO-2]
 gi|149738658|gb|EDM53001.1| survival protein SurA [Vibrio cholerae MZO-2]
          Length = 431

 Score = 77.7 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S  V V    +  S   ++ K       Q           +   L +++L+ L+     
Sbjct: 28  DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG++ D  R+   I        K+N+ + +  ++ +A+EG+   E+        
Sbjct: 83  QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  V          + L+  +      E  ++  ++         A  ++A +      
Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      +IS+I   V + + K                                  
Sbjct: 176 ----------YKISHIQLRVDDGQDKN-------------------------------AA 194

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  A++    LK G  F Q+A    K   +L     G   KE +P    AD I  +  KG
Sbjct: 195 ETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389
                     G+ I  + ++K   TV+  EV       K  I   +    A +++ E  +
Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310

Query: 390 RLEEFLALGTSMDEISRRE 408
           R++       +  E++++ 
Sbjct: 311 RIKN---GEVTFAELAQQY 326


>gi|289422879|ref|ZP_06424710.1| putative foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
 gi|289156709|gb|EFD05343.1| putative foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
          Length = 325

 Score = 77.7 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 80/196 (40%), Gaps = 10/196 (5%)

Query: 204 AIADPSNAVLT--QWFEKYKDNYRAPEYKRISYILF-DVHEKEKKIEISNDELQAEYEKN 260
           A  +     +   ++     D++   +Y R   I   +  E  K+++I  ++++  Y+  
Sbjct: 116 AKQNIEEDKIKSNEYKSLNIDDHVLKKYIRDKMIENKNQEEFNKRVKIKEEDIKKYYKDK 175

Query: 261 KEKYFSPEIRTVEQLV--FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF--- 315
             ++   E    +  +    ++ +A+ A++ LKKG  F  + ++  +  +  + G +   
Sbjct: 176 INEFKEKEFDCYQIWIKNPNDKIKAENAYKDLKKGMDFSTVVKKYSEDENSKNKGGYIGK 235

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            K+      L +    +  K ++T V+    GY I  + N + + T +    +  I + +
Sbjct: 236 IKKENLIPELREKALIMRDK-EYTGVVKSKDGYFIIKIDN-QRNLTKTLDSCRTKIKDDL 293

Query: 376 RITKASEKVKEDYKRL 391
                 E  K+   R+
Sbjct: 294 LEKLYQENNKKIINRI 309


>gi|311109018|ref|YP_003981871.1| peptidyl-prolyl cis-trans isomerase C [Achromobacter xylosoxidans
           A8]
 gi|310763707|gb|ADP19156.1| peptidyl-prolyl cis-trans isomerase C [Achromobacter xylosoxidans
           A8]
 gi|317405706|gb|EFV86002.1| peptidyl-prolyl cis-trans isomerase C [Achromobacter xylosoxidans
           C54]
          Length = 93

 Score = 77.7 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              +   ++   + +A+E   +++ G  F QLA+E     S     +LG+F    +    
Sbjct: 2   AQASARHILVSTEAKANELKTAIENGADFAQLAKENSSCPSSRDGGNLGTFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A  G+    +   FGY +  V++ K
Sbjct: 61  FDTVVFS-APVGEVQGPVKTQFGYHLVEVTSRK 92


>gi|187734680|ref|YP_001876792.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187424732|gb|ACD04011.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 357

 Score = 77.7 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 70/187 (37%), Gaps = 11/187 (5%)

Query: 209 SNAVLTQWFEKY--KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           +   L     +   ++ ++     R+           +  E S+++L+  Y   +++   
Sbjct: 148 TEQYLKTLHGQKLTQEQFQKKIAARLKQTEQLYRATAQAAEASDEDLKTYYNLIRDQLTP 207

Query: 267 PEIRTVEQLVFPN--------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
           P++R    +            ++ A+   + LK G+ F +LA E  +       G     
Sbjct: 208 PDLRKTRHIFLATLNREEAQVRQTAETLLERLKAGESFSRLAREFSEDERSAPAGGELGW 267

Query: 319 YIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             P  +      +LA   D  PV +   +G+ +   S +K   T S++E    + +  R 
Sbjct: 268 ISPARAKETLGLALADVPDNRPVLLKSRWGWHLVEASPVKKGKTPSYEEALPALRDAARS 327

Query: 378 TKASEKV 384
            + ++ V
Sbjct: 328 LRKAQAV 334


>gi|328957038|ref|YP_004374424.1| foldase protein PrsA [Carnobacterium sp. 17-4]
 gi|328673362|gb|AEB29408.1| foldase protein PrsA [Carnobacterium sp. 17-4]
          Length = 333

 Score = 77.7 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 99/299 (33%), Gaps = 38/299 (12%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPS---NLLLDQAKRFYFENRSVDYIVLNNRHV 202
           I E E+ +   + +  + +  + +  +      + + D+     +      Y        
Sbjct: 33  ITEDEFYEAMKETVGTSMLQQLIIEDVLTDLYGDKVTDEVVDKQYATEEETYGGAEAFEY 92

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
             +          +  +   +        I   L      + K E + +E+QA Y+    
Sbjct: 93  IMLQ-------QGYTAENYKD-------TIRLNLLIEEAVKDKTEFTEEEIQAAYDAYVP 138

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEY 319
                   T   ++  +++ A +    +  G  F +LA E     +    G   +FS   
Sbjct: 139 P------VTAAHILVEDEETAKDLITQINDGADFAELATENSVDTATAPNGGEITFSSGE 192

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           +      ++ ++L +    T  +   +G+ +  +  I+     + +E    I +Q+   K
Sbjct: 193 MV-PEFEEAAYALEEGEMTTEPVASEYGFHVIKM--IEKPEKGTLEEETDTIKDQLLTAK 249

Query: 380 ASEK---------VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
            ++          + +D   + +   L T+MD     ++  +++    +    D    E
Sbjct: 250 LADSAAIQEVISGIMQDANIIIDDKDLATAMDAYLAPKEDSAVEESTTEEPAADSSATE 308


>gi|157368404|ref|YP_001476393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Serratia
           proteamaculans 568]
 gi|157320168|gb|ABV39265.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Serratia
           proteamaculans 568]
          Length = 111

 Score = 77.7 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  N+K ADE    LK+G  F  LA +     S     SLG F+K  +   +   ++F
Sbjct: 27  HILVDNEKLADELLAKLKRGVSFDTLARKYSTCPSKRNGGSLGEFNKGTMV-AAFDKAVF 85

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L K       +   FGY I  V
Sbjct: 86  SIPLLKP---YGPVKTQFGYHIIKV 107


>gi|262172454|ref|ZP_06040132.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus MB-451]
 gi|261893530|gb|EEY39516.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus MB-451]
          Length = 431

 Score = 77.7 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 68/379 (17%), Positives = 125/379 (32%), Gaps = 90/379 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S  V V    +  S    + K       Q      N    +   L +++L+ L+     
Sbjct: 28  DSVAVIVNSGVILQSDVDGALKTVKANAKQN-----NQPLPQETVLREQVLEKLIIDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E IG++ D  R+   I        K+N+ + +  +S +A+EG+   E+        
Sbjct: 83  QQEAERIGVKIDDNRLNDAIKEI----AKNNQQTQEQLISSVAQEGLTYPEF-------- 130

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  V          + L+  +      E  ++  ++         A  ++A +      
Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      +IS+I   V E + K E                                
Sbjct: 176 ----------YKISHIQLRVEEGQDKSE-------------------------------A 194

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  A++    LK G  F Q+A    K   +L     G   KE +P    AD I  +  KG
Sbjct: 195 ESLANKLVGELKHGADFAQMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389
                     G+ I  + ++K   TV+  EV       K  I   +    A +++ E  +
Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFIQ 310

Query: 390 RLEEFLALGTSMDEISRRE 408
           R++       +  E++++ 
Sbjct: 311 RIKN---GEATFGELAQQY 326


>gi|239618053|ref|YP_002941375.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506884|gb|ACR80371.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kosmotoga olearia
           TBF 19.5.1]
          Length = 616

 Score = 77.7 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 89/295 (30%), Gaps = 32/295 (10%)

Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
                V G I     F        +D + S L     N +       K   +  +     
Sbjct: 23  IAELTVDGTITGVHAFQ-----VGYDEYESALQGALANYESQGQSIDKYFGKESLPSEIQ 77

Query: 170 GGMRPSNLLLDQ--AKRFYFENR------SVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
            G     +LLD+     F  E         V  I           + + A L  ++    
Sbjct: 78  LGYSVLKVLLDRKVMAFFAMEQDVFPDEAQVQQITDELVSRYISDETTRAQLEMYYGS-I 136

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQ 280
           +N+R      +       +     +   +      +EKNK    +  E      ++   +
Sbjct: 137 ENFRKVVEDIVFVRTLSQNVFNAIVPDYDASATEYFEKNKTDIKNEYESVNAAHILVSTE 196

Query: 281 KEADEAFQSLKKGK-KFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKK 335
             A E  + +  G+  F + A+             ++G      +  +   ++ F+ A  
Sbjct: 197 ASAMELKEKILLGELSFEEAAKRYSLDQYSAQQGGNIGELKHGTVI-LEFEEAAFA-ATP 254

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+    +   +GY +  V++       +F          ++ +KA E +   ++ 
Sbjct: 255 GEIVGPVKTDYGYHLIKVNSKT-----TFDS-----YEDLKNSKAYEDIMSRFEN 299


>gi|260665523|ref|ZP_05866369.1| protease maturation protein [Lactobacillus jensenii SJ-7A-US]
 gi|260560644|gb|EEX26622.1| protease maturation protein [Lactobacillus jensenii SJ-7A-US]
          Length = 304

 Score = 77.3 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 27/195 (13%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             +   + + +  YK  Y               +   K I   L  V   +   +I++ +
Sbjct: 73  KVTQKQVDKEYNAYKKQYGSSFESALEQNGYTTSSFKKNIKTNLLTVAALKDIKKITSKQ 132

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
            Q  ++  + K       TV+ ++   +  A++  + LK G  F  LA++     +  + 
Sbjct: 133 EQKAWKSYQPK------VTVQHILVSKKSTAEDVIKQLKSGTSFATLAKKYSIDSATKNK 186

Query: 313 G-----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           G       S +   D     + F L      T  +    GY I  +  IK      F + 
Sbjct: 187 GGKLTAFDSTDTTLDSDFKTAAFKLKNGEYTTTPVKTQSGYEIIKM--IKHPSKGKFSDH 244

Query: 368 KKDIANQMRITKASE 382
           KK+I  Q+  +   +
Sbjct: 245 KKEIDEQIYQSMEQD 259


>gi|149924928|ref|ZP_01913258.1| peptidylprolyl cis-trans isomerase [Plesiocystis pacifica SIR-1]
 gi|149814196|gb|EDM73809.1| peptidylprolyl cis-trans isomerase [Plesiocystis pacifica SIR-1]
          Length = 397

 Score = 77.3 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 112/370 (30%), Gaps = 78/370 (21%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
            + +VG + +P + F+  ++ E   + ++       + A      +KI+D L+    +  
Sbjct: 73  VLATVGDRSIPKADFLARYEPEATKLLERRDDGKVPD-AYQAMQREKIIDALIWSELMAL 131

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
             E  G++    ++  E  +    H  D       + + L R G   +         L  
Sbjct: 132 EAERSGVDVSPEKLAEEEGKQKA-HVAD-------WNAWLERIGQTPEIRQAMTRDYLRE 183

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK-- 219
             ++                                         + +   L   +++  
Sbjct: 184 RALIEA----------------------------------RKGPIEATEEELRAAYDESI 209

Query: 220 YKDNYRAPE-YKRISYILFDVHEKEKKIEI----------SNDELQAEYEKNKEKYFSPE 268
                 AP+   R S+ L     +E   +I          ++  ++ E++   +      
Sbjct: 210 KAGRLTAPQPMARASHFLITYGPREGDEKIQPVPFKQREETDQAVKDEWKAKAKARAEAL 269

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
               +Q                  G  F +   E  +         +G F +  +   + 
Sbjct: 270 RELAQQ-----------------PGVDFNEFCREYSEGPGAYRGGDMGLFPQTQMIK-AY 311

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
           AD  FSL + G  +  +    GY +  V     +  + F+ V+ D+  Q+   K     +
Sbjct: 312 ADVAFSL-EIGVLSEPVESDKGYYVIKVFGRYEAGDLPFEAVRADLVRQVEGQKLQMGRE 370

Query: 386 EDYKRLEEFL 395
              K LEE  
Sbjct: 371 ALRKELEERF 380


>gi|240081552|ref|ZP_04726095.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA19]
 gi|240124329|ref|ZP_04737285.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID332]
          Length = 332

 Score = 77.3 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 31/221 (14%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     +       +P  +R     I           +   +S  E+ A  E+
Sbjct: 117 IQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 176

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA    
Sbjct: 177 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYDQARNGTDFTGLARRYS 236

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 237 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 294

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
                 ++ I N +R     +K  +    L   L  G  +D
Sbjct: 295 P-----EERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVD 330


>gi|124004175|ref|ZP_01689021.1| chaperone SurA, putative [Microscilla marina ATCC 23134]
 gi|123990245|gb|EAY29744.1| chaperone SurA, putative [Microscilla marina ATCC 23134]
          Length = 460

 Score = 77.3 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 114/356 (32%), Gaps = 81/356 (22%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELG 65
           +  + K ++ VL +   I G S    +  G   V      V    +  S     +   L 
Sbjct: 7   QKLIFKSYIKVLLLCLAI-GFSSMSMAQGGGQLVDKIIAKVNNNIILESDLQQRY---LE 62

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
           +ISQ      +   A    L  KIL+ ++    L    E   +      V  ++      
Sbjct: 63  IISQ------SQTTAPEKDLKCKILEEMIIQKLLVAKAEIDSVIVSDIEVNLQL------ 110

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
              D +  +      L   G  +++    Y K +                + + +  +  
Sbjct: 111 ---DRRIDY-----MLKSVGGEKQQLEKLYGKTM----------------DQIKEDIRDI 146

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
             E  +V  +   N  + +    +   + Q+F+    +               +     +
Sbjct: 147 LKEQMTVSKM---NGEITSTVKITPKEVRQYFDSIPKD--------------SLPYFSDE 189

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           +E+           +  K   P     +++    +++ ++    L KG+ F QLA+E  +
Sbjct: 190 VEV----------GHIVKIPEPTKEQKQKI----RQKLEKIRGRLMKGEDFAQLAQEFSQ 235

Query: 306 S----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                    +LG  ++          ++F L KK + + VI    G+ +  +   +
Sbjct: 236 DYVSAKQGGNLGWQTRGVFV-PKFEAAVFRL-KKNEISKVIETQLGFHVIQLLERR 289


>gi|329119266|ref|ZP_08247953.1| sura/ppiase domain protein [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464613|gb|EGF10911.1| sura/ppiase domain protein [Neisseria bacilliformis ATCC BAA-1200]
          Length = 321

 Score = 77.3 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 87/272 (31%), Gaps = 36/272 (13%)

Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
           A +  +E E   H    L    +V       G+  S    D+A       +      L  
Sbjct: 58  AAQRPSENELRRHILAQLVNRALVVQAGKRRGITASEAETDEALAHAAAQKHTTVENLYA 117

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
           ++                   +   R    + I           ++  +S+ E+ A  E+
Sbjct: 118 QNAKNGIS-------------RATLRKDTAEGIIAEKVRQQAILQQARVSDAEVDAAIER 164

Query: 260 NKEKYFS------PEIRTVEQLVFPNQKE---------ADEAFQSLKKGKKFIQLAEEQG 304
            K++  +              ++   +K+           +     K G+ F  LA++  
Sbjct: 165 AKQQGITLPAGKPVRQYRARHILIKAEKDNALASAESVIRKIQNQAKAGRDFGDLAKQYS 224

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F    +      D++  L KKG  +  +   FG+ +  +++ + S T
Sbjct: 225 QDTSAAQGGDLGWFGDGVMV-PEFEDAVKKL-KKGQISRPVKTQFGWHLIQLTDTRESGT 282

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
              +  +  +   +   KA     +  ++L E
Sbjct: 283 PE-ERQRNAVRQYIMQQKAEAASAQLLQQLHE 313


>gi|326202453|ref|ZP_08192322.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987571|gb|EGD48398.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           papyrosolvens DSM 2782]
          Length = 363

 Score = 77.3 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 113/306 (36%), Gaps = 45/306 (14%)

Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT-- 162
           D+G+      V  +   +       +K     F      +G   KE I   T    +   
Sbjct: 47  DLGITKQEYLVLSKFNMNSFLQNAQSK-DSTKFDWNQKYQGSTAKEQIKKATLDSIQEIK 105

Query: 163 -DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
             ++     G++     LD  ++   +           ++       +   L   +    
Sbjct: 106 IQLIKAKEAGVKLEKADLDNIEKAIDQR---------IQNAGGSRAEAEKQLKNDYGVSL 156

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
            +Y+   YK +      +  +  K++I++DE++ +Y+ +K  Y   +  TV  ++   Q 
Sbjct: 157 ADYKEV-YKELVLSQKYMESERNKVKITDDEIKKQYDAHKADY---DKVTVTHILVATQD 212

Query: 282 -----------------EADEAFQSLKKGKKFIQLAE----EQGKSLSDISLG--SFSKE 318
                            +AD   + +++G     LAE    ++G+     + G  +FSK 
Sbjct: 213 LQTGAAFTEGKKKEAKEKADNLLKQIQQGADMQALAEKNSDDKGQDGKVNNKGVYTFSKG 272

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
            +      D  F+  K GD T V+  S+GY +      + +    F +VK +I + +  T
Sbjct: 273 KMV-PQFEDWAFANHKAGD-TGVVETSYGYHVMKFEKREETK---FDDVKDEIKSTILNT 327

Query: 379 KASEKV 384
           + +++ 
Sbjct: 328 RFNDEF 333


>gi|288800871|ref|ZP_06406328.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332332|gb|EFC70813.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 713

 Score = 77.3 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 56/468 (11%), Positives = 139/468 (29%), Gaps = 97/468 (20%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56
           L  IR         + + V+      +   +A  S   S       +  V  +K+    F
Sbjct: 4   LGKIRSK-----GAVLVGVIGFALFAFIAEEAFRSWESSRNNDRQQLGKVLGKKLDVQEF 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
               ++   +I  + G    SE      +   + +  V    +++ +E +GL      + 
Sbjct: 59  QKLVEEYSEVIKMQQGKENLSEE-EQTQIRDMVWNTFVQNKIIEKEVEALGLTVTDAEIQ 117

Query: 117 --------GEIARSPLFHGKDNKFSHDVFVSRLA----REGINEK---EYID-------- 153
                     +  +P  + +  +F  +     LA    ++  N +   +Y +        
Sbjct: 118 NVLKAGTNQMLMGTPFVNQQTGRFDVNALKKFLADYKTQKSTNPQMAQQYENLYKYWVFI 177

Query: 154 --HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
             +  + L       +F   +  + +    A +   E  ++         +         
Sbjct: 178 EKNLRQQLLAQKYQALFANCLLSNPIEAKMAFKDNTEESNIQLASFPYSSIDD------- 230

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIR 270
                                            KI ++  +L+ +Y++ KE++  P E R
Sbjct: 231 --------------------------------SKISVTESDLKNKYDELKERFKQPVETR 258

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-------DISLGSFSKEYIPDV 323
            ++ +    +    +  + LKK  +F   A++  ++           SL  F    +   
Sbjct: 259 NIKYIDIQVKPSTKD-TEDLKK--QFAGYAKDLSEATDVNNVVRRSTSLVPFLGVAVTKN 315

Query: 324 SLADSIFSLAK---KGDFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
           +    I S       G  + V   +F     I  + + +         V           
Sbjct: 316 AYPQDIASKLDSMSVGQVSNVFESNFDNTLNIIKLVSKQQLP----DSV--QYRQIQVGG 369

Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
             +E+ ++    + + L  G   + ++++       + L     ++  
Sbjct: 370 ATAEQARKTADSVYQALKGGADFEVLAKKYGQTGDKVWLTTSQYQNAP 417



 Score = 70.4 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 61/370 (16%), Positives = 116/370 (31%), Gaps = 40/370 (10%)

Query: 262 EKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
            K   P+     Q+          +K AD  +Q+LK G  F  LA++ G++   + L + 
Sbjct: 352 SKQQLPDSVQYRQIQVGGATAEQARKTADSVYQALKGGADFEVLAKKYGQTGDKVWLTTS 411

Query: 316 SKEYIP----DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-VKKD 370
             +  P    D        +     +   +     G +I  V N            VKK+
Sbjct: 412 QYQNAPSLDNDTKTLIETLNTLPANEVKNIAFTQ-GNIIVQVLNRSAFTNKYVAAVVKKN 470

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           I        +       Y +   F++  T+ + I++        +  ++          +
Sbjct: 471 I------DFSQNTYTTAYNKFSSFVSANTTPEAITKNAAKSGYTV--LERKDVTTAEHYL 522

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKK 488
           A I      L  +F   +           +   + V + +  P   R +   +V   VK 
Sbjct: 523 AGIHGTRDALKWLFDAKEGEVSPMYQCGDNDHLLLVILDKINPKGYRAVTDPQVKEIVKA 582

Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENKFF 544
           +    K AE++ +KA         +G N  +  K  GA++    QI              
Sbjct: 583 EVIKDKKAEQLMAKA---------KGVNSINAAKAKGATISDVAQITFAAPVFIPATGAS 633

Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT-----NSKVGPVQEKDKFISYLTQMMN 599
                  V +         P++   +  +F+VT     N      +E+ K      Q   
Sbjct: 634 EPALSGAVSATAKGKFSAQPVKGNAAVYLFQVTGKATNNVPFKATEEEQKLRQKYMQYAG 693

Query: 600 KDLLDSVIAY 609
             + +  I  
Sbjct: 694 SFMNELYINA 703


>gi|281356754|ref|ZP_06243245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis
           ATCC BAA-548]
 gi|281316881|gb|EFB00904.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis
           ATCC BAA-548]
          Length = 314

 Score = 77.3 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 113/356 (31%), Gaps = 82/356 (23%)

Query: 40  SSTVVSVGRQKVPFSS-FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           +S + SV  + +        + +QE    +   G  +         + +K +D+L+    
Sbjct: 24  NSVLASVNGEPISLWDVLPATRQQEYQAYAAYSGDRLYEAI---RQIRRKTVDDLIDRKL 80

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK-EYIDHYTK 157
           L     D   E  +  +  E+                       R G   + E+I    +
Sbjct: 81  LIADYRDKPFEISNQEIEAELDNIAE------------------RMGYRARSEFIREARE 122

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
                            +   L++ ++   E+  V  ++    HV     P    + +++
Sbjct: 123 -----------------AGSSLEKIRKNVEESLIVQLMIFRRIHVAENVTP--KEIYEYY 163

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           + + + +  PE   +  +L      +    ++ +                    + + + 
Sbjct: 164 KAHSEEFVKPETIELGLLLLSPDR-KDLEAVTAE--------------------ISKKLA 202

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAK 334
            +              + F  LA +      + +  +LG   +  +     A +I S  +
Sbjct: 203 ADP-------------ENFAALARQYSSGPDAENGGNLGLIERRRL-RPEFAAAIPS-PE 247

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           KG     I    G     V N  P+    F+++  +I  ++   K  EK++++Y +
Sbjct: 248 KGKVCGPIRTGDGVSFLKVLNHNPAERREFRKLTPEIRRRIEQDK-REKIRDEYVK 302


>gi|254292211|ref|ZP_04962978.1| survival protein SurA [Vibrio cholerae AM-19226]
 gi|150421868|gb|EDN13848.1| survival protein SurA [Vibrio cholerae AM-19226]
          Length = 431

 Score = 77.3 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S  V V    +  S   ++ K       Q           +   L +++L+ L+     
Sbjct: 28  DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG++ D  R+   I        K+N+ + +  ++ +A+EG+   E+        
Sbjct: 83  QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASIAQEGLTYPEF-------- 130

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  V          + L+  +      E  ++  ++         A  ++A +      
Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      +IS+I   V + + K                                  
Sbjct: 176 ----------YKISHIQLRVDDGQDKS-------------------------------AA 194

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  A++    L+ G  F Q+A    K   +L     G   KE +P    AD I  +  KG
Sbjct: 195 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389
                     G+ I  + ++K   TV+  EV       K  I   +    A +++ E  +
Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310

Query: 390 RLEEFLALGTSMDEISRRE 408
           R++       +  E++++ 
Sbjct: 311 RIKN---GEVTFAELAQQY 326


>gi|206580185|ref|YP_002237552.1| nitrogen fixation protein NifM [Klebsiella pneumoniae 342]
 gi|206569243|gb|ACI11019.1| nitrogen fixation protein NifM [Klebsiella pneumoniae 342]
          Length = 266

 Score = 77.3 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 77/237 (32%), Gaps = 21/237 (8%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV-LT 214
            + L+++                 + A +   +   V    +    +PA      A  L 
Sbjct: 9   RQRLAQSRWNCEPAAIAAVDRQAFEAAWQRQAQMEQVIVAQIAPEAIPAALQEGLATSLG 68

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE-----ISNDELQAEYEKNKEKYFSPEI 269
            W ++    +   E   I      +      I           +QA Y +++ ++  PE 
Sbjct: 69  AWLDE--GGFTPAERAAIVLHHARLETAFAGIASQAPRPDPATVQAWYLRHQAQFMRPEQ 126

Query: 270 RTVEQLVFPNQKEADEAFQSL--------KKGKKFIQLAEEQG---KSLSDISLGSFSKE 318
           R    L+     +    +  +           + F  LA+       +L    LG   + 
Sbjct: 127 RLTRHLLLTVDGDDQTVYSRIRELHGQIEASREAFAPLAQRHSHCPSALDGGLLGWIGRG 186

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            +    L +++F+LA+    +  +    G+ +     I+P+  ++ ++  +   + +
Sbjct: 187 LLY-PQLEEALFALAEN-ALSAPVASELGWHLVWCEAIRPAAPMTPEQALESARDYL 241


>gi|300361160|ref|ZP_07057337.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus gasseri JV-V03]
 gi|300353779|gb|EFJ69650.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus gasseri JV-V03]
          Length = 298

 Score = 77.3 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 17/228 (7%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
           G +  S       +    ++     IV +        D +   + + + KYK  Y +   
Sbjct: 36  GKITESQYYNKMKESQAGQSTLASMIVSDALESQYGKDVTQKQVDKEYNKYKKQYGSQFD 95

Query: 230 KRISYILFDVHEKEKKIE---ISNDELQA------EYEKNKEKYFSPEIRTVEQLVFPNQ 280
             +          +  ++   ++   L+         EK   K + PE+ TV+ ++   +
Sbjct: 96  SVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQEKKAWKNYQPEV-TVQHILVSKK 154

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF-SKEYIPDVSLADSIFSLAKK 335
             A++  + LK G  F +LA++             L +F S +   D S   + F L   
Sbjct: 155 STAEDIIKQLKDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTG 214

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              T  +   +GY +  +  IK     + +E KK I NQ+  + + ++
Sbjct: 215 EITTTPVKTQYGYHVIKM--IKHPAKGTLKEHKKQIDNQIYQSMSEDQ 260



 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 7/131 (5%)

Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMV 560
            + +++  K+G +F+ + K       T N    +   D+ +        +  F      +
Sbjct: 157 AEDIIKQLKDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGEI 216

Query: 561 KCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSV 616
              P++    Y V K+    +K    + K +  + + Q M++D  ++ SVIA +  +  V
Sbjct: 217 TTTPVKTQYGYHVIKMIKHPAKGTLKEHKKQIDNQIYQSMSEDQSVMRSVIATVLKRADV 276

Query: 617 TVHDNLIQRYL 627
           ++ D  ++  L
Sbjct: 277 SIKDKDLKNVL 287


>gi|257789791|ref|YP_003180397.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Eggerthella lenta
           DSM 2243]
 gi|257473688|gb|ACV54008.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Eggerthella lenta
           DSM 2243]
          Length = 418

 Score = 77.3 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/371 (12%), Positives = 104/371 (28%), Gaps = 37/371 (9%)

Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
           G+E     +   I        +      D + + L++         +      ++ +++ 
Sbjct: 45  GVEIAEDTITNYIQGV---REQLGADDEDSWGTWLSQNDYTPASVREEVFNSYAQRELLK 101

Query: 167 MFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS-NAVLTQWFEKYKDN 223
             V   G+   +  +D+       N   D           + + S  A + Q  ++ K  
Sbjct: 102 EGVEEKGITVESSEIDEQIDKVKANYDTDEKWQAALDQAGMTEDSYRAEIEQKLKENK-- 159

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQK 281
                                  + S+ ++    +     Y     +    ++F   ++ 
Sbjct: 160 --------------LYASFASDEDPSDADMLQYAQMYATAY--DGSKRSSHILFNSDDEA 203

Query: 282 EADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDF 338
            A E    L  G+  F+   +E  +    +          P     +    L   +KG  
Sbjct: 204 TAQEVLDKLNSGELDFVDAVKEYSQDPGSVERDGDVGWNNPSNLAKEYKDGLEPLEKGQL 263

Query: 339 TPVIHGSFGYVIAHVSNIK--PSFTVSFQEVKKD----IANQMRITKASEKVKEDYKRLE 392
           + ++   FG  I   +++   P    S  ++ ++    IA+ ++ TK  E  K+      
Sbjct: 264 SGLVTTQFGIHIIKCTDVYKAPEEVTSLDQIPEEWISVIASSLKSTKQQEAYKKWLDETT 323

Query: 393 EF--LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
           E   + +      +     +     P  D    D   +         +            
Sbjct: 324 EAADIKINDMPQGLPYDVDMSKYPAPNADSGATDGTQEGSTDGAEGGEAADGASADGTDA 383

Query: 451 SKDHTVALPDG 461
                 A  DG
Sbjct: 384 PASEDQAATDG 394



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 69/215 (32%), Gaps = 17/215 (7%)

Query: 9   SRTWVAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
            +T++ K    V       WGL    SD   S        +V   ++   +  N  +   
Sbjct: 2   KKTYIMKTVCAVGLTAACAWGLAGCSSDDNASSGTGGVAGTVNGVEIAEDTITNYIQGVR 61

Query: 65  GMI----SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +        G  ++        + +++ ++      L + +E+ G+  +   +  +I 
Sbjct: 62  EQLGADDEDSWGTWLSQNDYTPASVREEVFNSYAQRELLKEGVEEKGITVESSEIDEQID 121

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           +    +  D     + + + L + G+ E  Y     + L    +   F     PS+  + 
Sbjct: 122 KVKANYDTD-----EKWQAALDQAGMTEDSYRAEIEQKLKENKLYASFASDEDPSDADML 176

Query: 181 QAKRFYFENRSVDY----IVLNNRHVPAIADPSNA 211
           Q  + Y            I+ N+       +  + 
Sbjct: 177 QYAQMYATAYDGSKRSSHILFNSDDEATAQEVLDK 211


>gi|322508232|gb|ADX03686.1| Peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           1656-2]
          Length = 414

 Score = 77.3 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/405 (12%), Positives = 121/405 (29%), Gaps = 69/405 (17%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           F+      V  V    +  S       +    +  +       E      L  ++LD L+
Sbjct: 4   FAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 58

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153
                 + ++  G++ D   +   + +      +    S + F  +L    I    Y + 
Sbjct: 59  LRQAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--IAPGTYENL 113

Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204
                + L+   +     +  ++ S+  +D      Q +        V ++ ++  +   
Sbjct: 114 RSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQE 173

Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242
           + + +  V +Q  +    N                  +R     P             + 
Sbjct: 174 VQNVAKEVRSQLAQSNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQT 233

Query: 243 EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291
              I + +    L+    K  E+           ++            ++  D  ++ LK
Sbjct: 234 TDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLK 293

Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            G+ F  LA     + G +    SLG  +   +        +  +   G+ +      FG
Sbjct: 294 AGEDFAILAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFG 351

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           + I  V++ +           KD+ ++ +   A + + E     E
Sbjct: 352 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 386


>gi|304383132|ref|ZP_07365606.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
 gi|304335709|gb|EFM01965.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
          Length = 713

 Score = 77.3 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 70/647 (10%), Positives = 189/647 (29%), Gaps = 98/647 (15%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           L  IR  S+  +  I + V    F+   +  S      +    V  +  +KV    F   
Sbjct: 4   LGKIR--SKGLILIIIISVGLFAFIAEEFVRSCEATRNNERQQVGEIMGEKVSVQDFQKL 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG-- 117
            ++   +I    G    ++      +   + +  V    +++  E +GL      +    
Sbjct: 62  VEEYTNVIKMTQGRENLTDE-EQNQVKDMVWNTYVQNKLIEKETEKLGLTVTDQELQNIL 120

Query: 118 ------EIARSPLFHGKDNKFSHDVFVSRLA----------------REGINEKEYIDH- 154
                  + ++P  + +  +F  +     LA                ++  +   +I+  
Sbjct: 121 NEGTNPMLLQTPFVNQQTGRFDANALKKFLADYKTAKTGDPRAAEQYQQLYDFWTFIEKT 180

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVL 213
             +         +    +  + +    A +   E  +V         +       ++A L
Sbjct: 181 LRQQTLSQKYQSLLAHCLLSNPVEAKMAFKAENEESNVQLAAFPYSSINDNQVKVTDADL 240

Query: 214 TQWFEKYKDNYRA-PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
              +++ K  ++   E + I ++   V        +                        
Sbjct: 241 KAKYDELKPRFKQYEETRDIKFVDVHVQASAADRSV------------------------ 276

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
              +F +    +E    LK      ++  +   ++    LG    +      +A  I S+
Sbjct: 277 ---LFKS---VNELTDQLKAVSDPAEVIRKSNSAVPY--LGVPVSKNAFPQDIAQRIDSM 328

Query: 333 AKKGDFTPVI--HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS------EKV 384
           A  G     +         +  +              K  + + ++           +  
Sbjct: 329 A-VGTVYGPVENKQDNTLNVIRLM------------AKSQLPDSIQFRVIQIGGVSVDAA 375

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           ++    +   L  G   D ++++         +     +     +     Y E L     
Sbjct: 376 RKTADSVYTALKGGAEFDALAKKYGQTGERTWMTTRQYEQSPSMDNDTKTYIEAL----- 430

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
               P+++   +A+  G+ + +Q+ +     ++ +  V   +KK     K     +    
Sbjct: 431 -NTQPVNEIRNIAMTSGN-VILQVVDRKGMTEKYIAAV---IKKPIDFSKNTYSAAYNKF 485

Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF--GYDGISQVFSGPVEMVKC 562
              +  ++     +      G  +     +    +         D +  VF      V  
Sbjct: 486 SKFVSENQTLDGIQKNAAKYGFKVQEAGDVRTSQHYVAGIHSTRDAMKWVFDAKEGEVSP 545

Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
              E G +  +  +  +K+ P+  +D   + +  ++ +++L  + A 
Sbjct: 546 L-YECGDNDHLLVIVLNKIHPMGYRDLDDAQVKDLVRQEVLRDMKAN 591



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 109/353 (30%), Gaps = 35/353 (9%)

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD-------SIF 330
             +K AD  + +LK G +F  LA++ G++         +          D          
Sbjct: 374 AARKTADSVYTALKGGAEFDALAKKYGQT---GERTWMTTRQYEQSPSMDNDTKTYIEAL 430

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +     +   +   S G VI  V + K         V   I   +  +K        Y +
Sbjct: 431 NTQPVNEIRNIAMTS-GNVILQVVDRKGMTEKYIAAV---IKKPIDFSK--NTYSAAYNK 484

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
             +F++   ++D I +        +              VA I      +  VF   +  
Sbjct: 485 FSKFVSENQTLDGIQKNAAKYGFKVQEAGDVRTSQHY--VAGIHSTRDAMKWVFDAKEGE 542

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEVSSKANQLVL 508
                    +   + + + +  P   R L+  +V   V+++            KAN L+ 
Sbjct: 543 VSPLYECGDNDHLLVIVLNKIHPMGYRDLDDAQVKDLVRQEVLRDM-------KANTLIN 595

Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK-----CF 563
           +   +G       K  GA++   NQI                   SG V  V        
Sbjct: 596 KL--KGVTSIAAAKGKGATVQAVNQIT-FAAPVFIASTGAAEPALSGAVSAVGKGRFSPH 652

Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
           P++      +F+VT     PV+   K      +     L  + +  L ++  V
Sbjct: 653 PVKGMAGVYLFQVTGKTTRPVKFDAKAYEQKMKQHAMQLAGNFMQELYAKAKV 705


>gi|256827570|ref|YP_003151529.1| parvulin-like peptidyl-prolyl isomerase [Cryptobacterium curtum DSM
           15641]
 gi|256583713|gb|ACU94847.1| parvulin-like peptidyl-prolyl isomerase [Cryptobacterium curtum DSM
           15641]
          Length = 404

 Score = 77.3 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 94/343 (27%), Gaps = 88/343 (25%)

Query: 45  SVGRQKVPFS---SFINSWKQELGMISQKI-GFVVNSERARSVGLDKKILDNLVSGATLD 100
           +V   ++       F+ ++++  G+  +   G  +         +  +I+D  V      
Sbjct: 40  TVNGTEISEQTVTDFVQNFRETQGLTDEDTWGKWMAKSSMTPSQVRDQIIDYFVGIDLTR 99

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q  E+ G+      V  ++A         N    D + S L + G  E+ Y D     + 
Sbjct: 100 QAAEENGVSVSDEDVDAQVASMKA-----NYSDDDAWQSALKQAGTTEEGYRDSVHNAML 154

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
              +                                       + A  S+  L  + ++Y
Sbjct: 155 ENALKEKVTA--------------------------------ESTAGASDEELLTYAQQY 182

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
             ++   +         D  +  +K+                                  
Sbjct: 183 ARSFSGAKKSSHILFASDDSDTAQKV---------------------------------- 208

Query: 281 KEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKG 336
                    +  G+  F   A+E          G      + +       D++ +L K G
Sbjct: 209 ------LDQINSGQISFEDAAKEYSIDTVSAQDGGNVGWDLLNRFVQPYTDALTNLDK-G 261

Query: 337 DFTPVIHGSFGYVIAHVSNIK--PSFTVSFQEVKKDIANQMRI 377
             + ++   +G  I   +++   P       +V  ++ + +R 
Sbjct: 262 QVSGLVMSDYGIHIIKCTDVYEAPDEVTEIDQVPVELIDYIRK 304


>gi|15640472|ref|NP_230099.1| survival protein SurA [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121729954|ref|ZP_01682374.1| survival protein SurA [Vibrio cholerae V52]
 gi|147674503|ref|YP_001218713.1| survival protein SurA [Vibrio cholerae O395]
 gi|153823925|ref|ZP_01976592.1| survival protein SurA [Vibrio cholerae B33]
 gi|227080656|ref|YP_002809207.1| survival protein SurA [Vibrio cholerae M66-2]
 gi|229507084|ref|ZP_04396590.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae BX
           330286]
 gi|229508761|ref|ZP_04398253.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae B33]
 gi|229519748|ref|ZP_04409191.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC9]
 gi|229606260|ref|YP_002876908.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae MJ-1236]
 gi|254850676|ref|ZP_05240026.1| chaperone surA precursor [Vibrio cholerae MO10]
 gi|255743828|ref|ZP_05417785.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholera CIRS 101]
 gi|262147181|ref|ZP_06027987.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae INDRE
           91/1]
 gi|262167591|ref|ZP_06035295.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC27]
 gi|298501023|ref|ZP_07010824.1| survival protein SurA [Vibrio cholerae MAK 757]
 gi|81788531|sp|Q9KUS0|SURA_VIBCH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|9654869|gb|AAF93618.1| survival protein SurA [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121628294|gb|EAX60804.1| survival protein SurA [Vibrio cholerae V52]
 gi|126518552|gb|EAZ75775.1| survival protein SurA [Vibrio cholerae B33]
 gi|146316386|gb|ABQ20925.1| survival protein SurA [Vibrio cholerae O395]
 gi|227008544|gb|ACP04756.1| survival protein SurA [Vibrio cholerae M66-2]
 gi|227012299|gb|ACP08509.1| survival protein SurA [Vibrio cholerae O395]
 gi|229344437|gb|EEO09412.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC9]
 gi|229354164|gb|EEO19095.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae B33]
 gi|229355829|gb|EEO20749.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae BX
           330286]
 gi|229368915|gb|ACQ59338.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae MJ-1236]
 gi|254846381|gb|EET24795.1| chaperone surA precursor [Vibrio cholerae MO10]
 gi|255738577|gb|EET93965.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholera CIRS 101]
 gi|262023927|gb|EEY42624.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC27]
 gi|262031386|gb|EEY49994.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae INDRE
           91/1]
 gi|297540271|gb|EFH76331.1| survival protein SurA [Vibrio cholerae MAK 757]
          Length = 431

 Score = 77.3 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S  V V    +  S   ++ K       Q           +   L +++L+ L+     
Sbjct: 28  DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG++ D  R+   I        K+N+ + +  ++ +A+EG+   E+        
Sbjct: 83  QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  V          + L+  +      E  ++  ++         A  ++A +      
Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      +IS+I   V + + K                                  
Sbjct: 176 ----------YKISHIQLRVDDGQDKST-------------------------------A 194

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  A++    L+ G  F Q+A    K   +L     G   KE +P    AD I  +  KG
Sbjct: 195 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389
                     G+ I  + ++K   TV+  EV       K  I   +    A +++ E  +
Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310

Query: 390 RLEEFLALGTSMDEISRRE 408
           R++       +  E++++ 
Sbjct: 311 RIKN---GEVTFAELAQQY 326


>gi|238855146|ref|ZP_04645468.1| foldase protein PrsA [Lactobacillus jensenii 269-3]
 gi|282932559|ref|ZP_06337981.1| foldase protein PrsA [Lactobacillus jensenii 208-1]
 gi|313473154|ref|ZP_07813638.1| foldase protein PrsA [Lactobacillus jensenii 1153]
 gi|238832227|gb|EEQ24542.1| foldase protein PrsA [Lactobacillus jensenii 269-3]
 gi|239528600|gb|EEQ67601.1| foldase protein PrsA [Lactobacillus jensenii 1153]
 gi|281303307|gb|EFA95487.1| foldase protein PrsA [Lactobacillus jensenii 208-1]
          Length = 304

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 27/195 (13%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             +   + + +  YK  Y               +   K I   L  V   +   +I++ +
Sbjct: 73  KVTQKQVDKEYNAYKKQYGSSFESALEQNGYTTSSFKKNIETNLLTVAALKDIKKITSKQ 132

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
            Q  ++  + K       TV+ ++   +  A++  + LK G  F  LA++     +  + 
Sbjct: 133 EQKAWKSYQPK------VTVQHILVSKKSTAEDVIKQLKSGTSFATLAKKYSIDSATKNK 186

Query: 313 G-----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           G       S +   D     + F L      T  +    GY I  +  IK      F + 
Sbjct: 187 GGKLTAFDSTDTTLDSDFKTAAFKLKNGEYTTTPVKTQSGYEIIKM--IKHPSKGKFSDH 244

Query: 368 KKDIANQMRITKASE 382
           KK+I  Q+  +   +
Sbjct: 245 KKEIDEQIYQSMEQD 259


>gi|256852157|ref|ZP_05557543.1| protease maturation protein [Lactobacillus jensenii 27-2-CHN]
 gi|260661810|ref|ZP_05862721.1| protease maturation protein [Lactobacillus jensenii 115-3-CHN]
 gi|282933671|ref|ZP_06339030.1| foldase protein PrsA [Lactobacillus jensenii 208-1]
 gi|256615203|gb|EEU20394.1| protease maturation protein [Lactobacillus jensenii 27-2-CHN]
 gi|260547557|gb|EEX23536.1| protease maturation protein [Lactobacillus jensenii 115-3-CHN]
 gi|281302204|gb|EFA94447.1| foldase protein PrsA [Lactobacillus jensenii 208-1]
          Length = 302

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 27/195 (13%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             S   + + +  YK  Y               +   K I   L  V   +   +I++ +
Sbjct: 73  KVSQKQVDKEYNAYKKQYGSSFESALEQNGYTTSSFKKNIETNLLTVAALKDIKKITSKQ 132

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
            Q  ++  + K       TV+ ++   +  A++  + LK G  F  LA++     +    
Sbjct: 133 EQKAWKSYQPK------VTVQHILVSKKSTAEDIIKQLKSGTSFATLAKKYSTDSATKDK 186

Query: 313 G-----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           G       S +   D     + F L      T  +    GY I  +  IK      F + 
Sbjct: 187 GGKLAAFDSTDTTLDSDFKTAAFKLKTGEYTTTPVKTQSGYEIIKM--IKHPSKGKFSDH 244

Query: 368 KKDIANQMRITKASE 382
           KK+I  Q+  +   +
Sbjct: 245 KKEIDEQIYQSMEQD 259


>gi|325107411|ref|YP_004268479.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967679|gb|ADY58457.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           brasiliensis DSM 5305]
          Length = 423

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 49/371 (13%), Positives = 110/371 (29%), Gaps = 71/371 (19%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
            S+ V  V    V        + +++  + +++        A    L K+ L   +    
Sbjct: 104 DSTVVAVVNGNTVLAGDVFAPYARQMVKMREQL--TDEQYLAAQRELLKRDLPGHIERTL 161

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L      +       ++             D                     + +H  K+
Sbjct: 162 LSHA---LKSTLKQEQIDKL----------DGVLDQA---------------FAEHVEKL 193

Query: 159 LSRTDVVGMFVGGMRPSN---LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
           L +T+         +  +    L D  + F  +  ++ Y+                 L  
Sbjct: 194 LVKTETSSALELDKKLQSEGTSLADIRQTFGTQQLAMQYL---ATESQVNVQLGRVDLLN 250

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++ +  D +  P   +   I   +                            + R     
Sbjct: 251 YYRENLDRFSHPTRVKWQEIRVSITP------------------------QQDRRAAVMK 286

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSL 332
           +       +E  + L++G  F  +A E      +    +     ++ + DV L   +FSL
Sbjct: 287 L-------NEVVKKLQEGVAFPDVAREYSDGPTASQGGNWDWTKEDSLADVELNKELFSL 339

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
              G  + +I     + I  V   + +    F++++  +  ++R  K  EK  E  ++L 
Sbjct: 340 P-TGAISRIIETDKYFRIIRVVEREDAHVTPFEKLQDGLREEIRSKKRHEKTAEVLRKLN 398

Query: 393 EFLALGTSMDE 403
           E   + T  D+
Sbjct: 399 ETAVIQTIFDD 409


>gi|330448801|ref|ZP_08312448.1| peptidyl-prolyl cis-trans isomerase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492992|dbj|GAA06945.1| peptidyl-prolyl cis-trans isomerase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 433

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 77/495 (15%), Positives = 160/495 (32%), Gaps = 90/495 (18%)

Query: 22  FVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
            +  ++ G+S    +        V++V    +  S   N+  + + + + +    +    
Sbjct: 8   VLSLMMMGMSATSMAAPQELDQVVMTVNDGVILQSDV-NAMLKTVHLNAAEEHQQLPPND 66

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                L ++++D L+      Q  + +G+  D  ++   IA                   
Sbjct: 67  I----LRQQVMDKLIMENLQIQQAKQLGIRIDDSQLDQAIADVA---------------- 106

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
              + GI     +D   + L++  +          +++L  +A+      R    + +  
Sbjct: 107 --KQRGIT----VDQLRQTLAKAGISYPMFREQMRNDMLASEARTVIVRKR----VNILP 156

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
           + V A+A        Q                        +  + +I +  D  +A  +K
Sbjct: 157 QEVDALAKQMAKQTQQ--------------------NVQYNISQIQIRVDEDAEKAARDK 196

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFS 316
                               ++EA++    LKKG  F QLA       K+L     G  S
Sbjct: 197 -------------------AKQEAEDIVAQLKKGADFSQLAYRYSKGPKALKGGEWGWMS 237

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IAN 373
           KE +P    AD I +  K            GY I  ++++K   +VS  EVK     I  
Sbjct: 238 KEEMP-TIFADQIQNNGKD-AIIGPFRSGVGYHILKINDVKGMPSVSVVEVKARHILIKP 295

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
            + ++ A+ K  ++ +++ + +  G      +   K  S D       G+          
Sbjct: 296 SVILSDAAAK--KELEQIRQRIISGK--QSFAAAAKAYSQDPGSAANGGELGWQVPDMYA 351

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
           P  +  +  +     P+ K          +  V+++      DR    +     +     
Sbjct: 352 PAFKDKVETL-----PVDKISEPFKSAFGWHIVEVEGRRKV-DRTDAAMKNRAAQILFNR 405

Query: 494 KTAEEVSSKANQLVL 508
           K  EE  +   +L  
Sbjct: 406 KFNEEAQTWLQELRA 420


>gi|301166294|emb|CBW25869.1| peptidyl-prolyl cis-trans isomerase [Bacteriovorax marinus SJ]
          Length = 90

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
             + + ++  ++ E  +  + +++GK F +LA +     S     SLGSF K  +     
Sbjct: 3   QISAQHILVDHEYEITDLLKKIEEGKTFEELARDYSNCPSGKDGGSLGSFGKGMMVKP-F 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             + F+L K G+ +  +   FGY +  
Sbjct: 62  EQAAFAL-KVGEVSGAVRTQFGYHLIK 87


>gi|122070648|sp|Q5ZYR3|SURA_LEGPH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 429

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 73/488 (14%), Positives = 146/488 (29%), Gaps = 90/488 (18%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +  V  L  G+  A         V  V    +  S      +     I  +     N + 
Sbjct: 5   IALVCALFSGVCFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 59

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                L K++L +L+      Q  +  G+  ++  +   I +        N  +      
Sbjct: 60  PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 115

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            + ++GI+ +EY     + + +  ++                               +  
Sbjct: 116 EITKQGISWQEY----RQNIRKEMLIS-----------------------------RVQQ 142

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
           + V      +N  + Q+ +            RI       H K   I +S +        
Sbjct: 143 KAVGKDIIVTNEQVEQYLKT---------SGRIENSNLTYHLKNIVIPLSEE-------- 185

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFS 316
                  P  + +++     + EA+     +KKG+ F +LA E+     +L    LG   
Sbjct: 186 -------PTTKQLQR----AKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERH 234

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD--IANQ 374
              +P+V  A  +  + K G     I    G+ +  +  +          V     + + 
Sbjct: 235 LAELPEV-FAKEVVHM-KVGQVAGPIRAGNGFHLIKLVAVGGENQR---HVITQTHVRHI 289

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
           +    AS    E  K++        S  + +   K  S+D       G          +P
Sbjct: 290 LLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVP 349

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV--LTDVKKDWKT 492
             E+ +  +          H V+ P  +     + E I  R +   E      V++  + 
Sbjct: 350 EFEKTMNSL--------PLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQ 401

Query: 493 VKTAEEVS 500
            K  E V 
Sbjct: 402 RKFVEAVQ 409


>gi|116630072|ref|YP_815244.1| peptidylprolyl isomerase [Lactobacillus gasseri ATCC 33323]
 gi|238854106|ref|ZP_04644453.1| foldase protein PrsA 1 [Lactobacillus gasseri 202-4]
 gi|311110302|ref|ZP_07711699.1| foldase protein PrsA 1 [Lactobacillus gasseri MV-22]
 gi|116095654|gb|ABJ60806.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus gasseri ATCC
           33323]
 gi|238833182|gb|EEQ25472.1| foldase protein PrsA 1 [Lactobacillus gasseri 202-4]
 gi|311065456|gb|EFQ45796.1| foldase protein PrsA 1 [Lactobacillus gasseri MV-22]
          Length = 298

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 17/228 (7%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
           G +  S       +    ++     IV +        + +   + + + KYK  Y +   
Sbjct: 36  GKITESQYYNKMKESQAGQSTLASMIVSDALESQYGKEVTQKQVDKEYNKYKKQYGSQFD 95

Query: 230 KRISYILFDVHEKEKKIE---ISNDELQA------EYEKNKEKYFSPEIRTVEQLVFPNQ 280
             +          +  ++   ++   L+         EK   K + PE+ TV+ ++   +
Sbjct: 96  SVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQEKKAWKNYQPEV-TVQHILVSKK 154

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF-SKEYIPDVSLADSIFSLAKK 335
             A++  + LK G  F +LA++             L +F S +   D S   + F L   
Sbjct: 155 STAEDIIKQLKDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTG 214

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              T  +   +GY +  +  IK     + +E KK I NQ+  + + ++
Sbjct: 215 EITTTPVKTQYGYHVIKM--IKHPAKGTLKEHKKQIDNQIYQSMSEDQ 260



 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 7/131 (5%)

Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMV 560
            + +++  K+G +F+ + K       T N    +   D+ +        +  F      +
Sbjct: 157 AEDIIKQLKDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGEI 216

Query: 561 KCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSV 616
              P++    Y V K+    +K    + K +  + + Q M++D  ++ SVIA +  +  V
Sbjct: 217 TTTPVKTQYGYHVIKMIKHPAKGTLKEHKKQIDNQIYQSMSEDQSVMRSVIATVLKRADV 276

Query: 617 TVHDNLIQRYL 627
           ++ D  ++  L
Sbjct: 277 SIKDKDLKNVL 287


>gi|258627055|ref|ZP_05721853.1| survival protein SurA [Vibrio mimicus VM603]
 gi|258580729|gb|EEW05680.1| survival protein SurA [Vibrio mimicus VM603]
          Length = 431

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 124/379 (32%), Gaps = 90/379 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    +  S    + K       Q      N    +   L +++L+ L+     
Sbjct: 28  DGVAVIVNSGVILQSDVDGALKTVKANAKQN-----NQPLPQETVLREQVLEKLIIDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E IG++ D  R+   I        K+N+ + +  +S +A+EG+   E+        
Sbjct: 83  QQEAERIGVKIDDNRLNDAIKEI----AKNNQQTQEQLISSVAQEGLTYPEF-------- 130

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  V          + L+  +      E  ++  ++         A  ++A +      
Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      +IS+I   V E + K E                                
Sbjct: 176 ----------YKISHIQLRVEEGQDKSE-------------------------------A 194

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  A++    LK G  F Q+A    K   +L     G   KE +P    AD I  +  KG
Sbjct: 195 ESLANKLVGELKHGADFAQMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389
                     G+ I  + ++K   TV+  EV       K  I   +    A +++ E  +
Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310

Query: 390 RLEEFLALGTSMDEISRRE 408
           R++       +  E++++ 
Sbjct: 311 RIKN---GEATFGELAQQY 326


>gi|260767121|ref|ZP_05876066.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio furnissii CIP
           102972]
 gi|260617876|gb|EEX43050.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio furnissii CIP
           102972]
 gi|315181264|gb|ADT88178.1| survival protein SurA [Vibrio furnissii NCTC 11218]
          Length = 431

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 59/380 (15%), Positives = 118/380 (31%), Gaps = 92/380 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    +  S    +         +      N        L +++++ L+     
Sbjct: 28  DRVAVIVNNGVILQSDIDTALLSVKANAKKN-----NRALPDEAVLREQVVEKLIIDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E IG+  D  R+   I        K+N  + +     +A EG+   E+     + +
Sbjct: 83  QQEAERIGVRIDDNRLNEAINDI----AKENHQTAEQLRVSVAAEGLTYPEF----REQI 134

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFE 218
            +          +                 R ++ +      +  + A  +NA +     
Sbjct: 135 RKEMSASEARNALV---------------RRRINILPAEVNTLADLLAKETNATIQ---- 175

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                       +IS+I    ++ + K E+                              
Sbjct: 176 -----------YKISHIQLRFNDGQDKSEV------------------------------ 194

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            + +A +  + L KG  F  +A    K   +L     G   KE +P    AD I  +  K
Sbjct: 195 -EAQAKKLVEQLNKGADFSTMAITYSKGPKALDGGDWGWMRKEEMP-TIFADQI-KMQNK 251

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDY 388
           G          G+ I  + ++K   TV+  EV       K  I   +    A +++ E  
Sbjct: 252 GTIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDDGAQKQLNEFV 309

Query: 389 KRLEEFLALGTSMDEISRRE 408
           +R++   A   +  E++++ 
Sbjct: 310 RRIQ---AGEATFGELAQQY 326


>gi|109899724|ref|YP_662979.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           atlantica T6c]
 gi|122070658|sp|Q15QB3|SURA_PSEA6 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|109702005|gb|ABG41925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           atlantica T6c]
          Length = 431

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 123/362 (33%), Gaps = 62/362 (17%)

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
           L  + ++ L+  +  +Q  E +G++    ++   I        +D     D+    LA E
Sbjct: 66  LRTQAIERLIVDSLQNQMAERMGIQISDPQLDQTIDNIA---REDGTTVEDL-RKNLASE 121

Query: 145 GINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN--RSVDYIVLNNRH 201
           G++ + Y +   K L   +V        +  +   +        E   +  +Y  L +  
Sbjct: 122 GVSFEVYREQVRKELVTGEVRRANVRRRIYITPQEISNLVTLIDEQGGQQAEYH-LGHIL 180

Query: 202 VPAIADPSNAVLTQWFE---------KYKDNY-----------RAPEYKRISYILFDVHE 241
           +    +P++  +++  +              +           +A E   + ++  +   
Sbjct: 181 IGFPPEPTDEDVSKAKDTAEKVLELLNNGSEFAKIATASSSGSKALEGGDLGWMNINSMP 240

Query: 242 KEKKIEI---SNDEL------------QAEYEKNKEKYFSPEIRTVEQLVFP-----NQK 281
                 +   S D+L                +    +           ++       + +
Sbjct: 241 TLFAEAVQGTSKDDLIGPIRSGAGFHVLKIIDFRGIEKVEVAELKSRHILIKPSVILSDE 300

Query: 282 EADEAFQS-----LKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
           +A++         L     F +LA+E     G +L    LG  +   +   +  D++ SL
Sbjct: 301 KAEKMLTEFRKELLAGEADFAELAKEHSADPGSALRGGDLGW-ADPNVYVPAFRDTLQSL 359

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYKRL 391
            + G+ +  +  + G+ +  + + +       ++ K+D A Q+   +  +E+ +   K +
Sbjct: 360 -EVGEISQPVRSTHGWHLMQLMDKRVQDAT--EKRKEDKAYQLLFQRKFAEETEAWLKEM 416

Query: 392 EE 393
            +
Sbjct: 417 RD 418



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 77/244 (31%), Gaps = 28/244 (11%)

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------ 277
           YR    K +           ++I I+  E+        E+        +  ++       
Sbjct: 128 YREQVRKELVTGEVRRANVRRRIYITPQEISNLVTLIDEQGGQQAEYHLGHILIGFPPEP 187

Query: 278 ------PNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
                   +  A++  + L  G +F ++A       K+L    LG  +   +P    A++
Sbjct: 188 TDEDVSKAKDTAEKVLELLNNGSEFAKIATASSSGSKALEGGDLGWMNINSMP-TLFAEA 246

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEK 383
           +   +K  D    I    G+ +  + + +    V   E+K     I     +   KA + 
Sbjct: 247 VQGTSKD-DLIGPIRSGAGFHVLKIIDFRGIEKVEVAELKSRHILIKPSVILSDEKAEKM 305

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           + E  K L   LA      E+++     S D       G          +P     L  +
Sbjct: 306 LTEFRKEL---LAGEADFAELAKEH---SADPGSALRGGDLGWADPNVYVPAFRDTLQSL 359

Query: 444 FGKD 447
              +
Sbjct: 360 EVGE 363


>gi|258623407|ref|ZP_05718411.1| survival protein SurA [Vibrio mimicus VM573]
 gi|258584373|gb|EEW09118.1| survival protein SurA [Vibrio mimicus VM573]
          Length = 431

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 66/379 (17%), Positives = 123/379 (32%), Gaps = 90/379 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    +  S    + K       Q      N    +   L +++L+ L+     
Sbjct: 28  DGVAVIVNSGVILQSDVDGALKTVKANAKQN-----NQPLPQETVLREQVLEKLIIDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E IG++ D  R+   I        K+N+ + +  +S +A+EG+   E+        
Sbjct: 83  QQEAERIGVKIDDNRLNDAIKEI----AKNNQQTQEQLISSVAQEGLTYPEF-------- 130

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  V          + L+  +      E  ++  ++         A  ++A +      
Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      +IS+I   V E + K                                  
Sbjct: 176 ----------YKISHIQLRVEEGQDKS-------------------------------KA 194

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  A++    LK G  F Q+A    K   +L     G   KE +P    AD I  +  KG
Sbjct: 195 ESLANKLVGELKHGADFAQMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389
                     G+ I  + ++K   TV+  EV       K  I   +    A +++ E  +
Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310

Query: 390 RLEEFLALGTSMDEISRRE 408
           R++       +  E++++ 
Sbjct: 311 RIKN---GEATFGELAQQY 326


>gi|254293162|ref|YP_003059185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hirschia baltica
           ATCC 49814]
 gi|254041693|gb|ACT58488.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hirschia baltica
           ATCC 49814]
          Length = 322

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 8/149 (5%)

Query: 248 ISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           +    +Q  YE   N ++    E   V Q+V P  + A+   + +     F  LA  +  
Sbjct: 137 VDEASIQKYYETSINLKQLQLGEEYRVRQIVLPTLEAANAMIKQMTAETDFSVLASNRSI 196

Query: 306 S----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                L    LG  + E  P + LA++I + A  G  +       G+V+  V   +P   
Sbjct: 197 DEETRLEGGDLGFINPETAP-LPLANAIQNTAMGG-VSKPFETRKGWVVIKVVEKRPEPL 254

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390
            + Q+++  I + +  ++    +K+ +K 
Sbjct: 255 PTLQDLRPQIWDFLIASELERLLKKLHKD 283


>gi|317489254|ref|ZP_07947771.1| ppic-type ppiase domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325832301|ref|ZP_08165300.1| PPIC-type PPIASE domain protein [Eggerthella sp. HGA1]
 gi|316911655|gb|EFV33247.1| ppic-type ppiase domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486137|gb|EGC88591.1| PPIC-type PPIASE domain protein [Eggerthella sp. HGA1]
          Length = 418

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 92/302 (30%), Gaps = 35/302 (11%)

Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
           G+E     +   I        +      D + + L++         +      ++ +++ 
Sbjct: 45  GVEIAEDTITNYIQGV---REQLGADDEDSWGTWLSQNDYTPASVREEVFNSYAQRELLK 101

Query: 167 MFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS-NAVLTQWFEKYKDN 223
             V   G+   +  +D+       N   D           + + S  A + Q  ++ K  
Sbjct: 102 EGVEEKGITVESSEIDEQIDKVKANYDTDEKWQAALDQAGMTEDSYRAEIEQKLKENK-- 159

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQK 281
                                  + S+ ++    +     Y     +    ++F   ++ 
Sbjct: 160 --------------LYASFASDEDPSDADMLQYAQMYATAY--DGSKRSSHILFNSDDEA 203

Query: 282 EADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDF 338
            A E    L  G+  F+   +E  +    +          P     +    L   +KG  
Sbjct: 204 TAQEVLDKLNSGELDFVDAVKEYSQDPGSVERDGDVGWNNPSNLAKEYKDGLEPLEKGQL 263

Query: 339 TPVIHGSFGYVIAHVSNIK--PSFTVSFQEVKKD----IANQMRITKASEKVKEDYKRLE 392
           + ++   FG  I   +++   P    S  ++ ++    IA+ ++ TK  E  K+      
Sbjct: 264 SGLVTTQFGIHIIKCTDVYKAPEEVTSLDQIPEEWISVIASSLKSTKQQEAYKKWLDETT 323

Query: 393 EF 394
           E 
Sbjct: 324 EA 325



 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 69/215 (32%), Gaps = 17/215 (7%)

Query: 9   SRTWVAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
            +T++ K    V       WGL    SD   S        +V   ++   +  N  +   
Sbjct: 2   KKTYIMKTVCAVGLTAACAWGLAGCSSDDNASSGTGGVAGTVNGVEIAEDTITNYIQGVR 61

Query: 65  GMI----SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             +        G  ++        + +++ ++      L + +E+ G+  +   +  +I 
Sbjct: 62  EQLGADDEDSWGTWLSQNDYTPASVREEVFNSYAQRELLKEGVEEKGITVESSEIDEQID 121

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           +    +  D     + + + L + G+ E  Y     + L    +   F     PS+  + 
Sbjct: 122 KVKANYDTD-----EKWQAALDQAGMTEDSYRAEIEQKLKENKLYASFASDEDPSDADML 176

Query: 181 QAKRFYFENRSVDY----IVLNNRHVPAIADPSNA 211
           Q  + Y            I+ N+       +  + 
Sbjct: 177 QYAQMYATAYDGSKRSSHILFNSDDEATAQEVLDK 211


>gi|288958015|ref|YP_003448356.1| peptidyl-prolyl cis-trans isomerase [Azospirillum sp. B510]
 gi|288910323|dbj|BAI71812.1| peptidyl-prolyl cis-trans isomerase [Azospirillum sp. B510]
          Length = 485

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 82/324 (25%), Gaps = 80/324 (24%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
                   V  + V  S      +  L       G   N E  +   L  +++  L+   
Sbjct: 52  GSEGIAAVVNDEVVSVSDVNARIRMALLNA----GGAANPETIQR--LTPQVMRLLIDER 105

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
              Q  +  G+      +   I R                     +  +N          
Sbjct: 106 LQMQEAKRQGVTVSASEIDDAIKRIAE------------------QNRMN---------- 137

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
                 +  M      P + L DQ +          +  +  R +          +    
Sbjct: 138 ---NQQLQEMLKRQNVPVSTLKDQIRALLA------WQKVMQRRIRQEVVVGEDEVDAAM 188

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E+ K N   PEY      L      +      +DE++                       
Sbjct: 189 ERLKANIGKPEYLVAEIFLAVDSPDQ------DDEVRRN--------------------- 221

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
                A+   + +K+G  F  LA +      + S   LG      +      D   S  +
Sbjct: 222 -----AERLVEEVKRGGNFAALARQFSQSAGAASGGDLGWVRSGEL--SPEVDKALSGMR 274

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKP 358
            G  +  +  + GY I  V   +P
Sbjct: 275 GGQLSAPVRTATGYHILLVRGQRP 298


>gi|315607433|ref|ZP_07882429.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574]
 gi|315250865|gb|EFU30858.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574]
          Length = 490

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 90/285 (31%), Gaps = 42/285 (14%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAK--RFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
           +++    +         P   + +Q    + +    ++D I ++   V          + 
Sbjct: 82  EVMRLQGLAEGITFSGDPDCSIPEQIAVQKLFLHQAAIDSIEVSESEVAQGI---EGQIN 138

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVH----------------EKEKKIEISNDELQAEYE 258
            W +      +  EY++ S                       +  + +++S  +++A + 
Sbjct: 139 SWIQMTGSREKLEEYRKQSITQMRQQMHDDYRNRLLIQKMRMKLVEDVKVSPAQVRAYFR 198

Query: 259 KNKEKY--FSPEIRTVEQLVFPNQKEADEA----------FQSLKKGKK-FIQLAEEQGK 305
                   F P    VE L    +   +E              + KG+  F  LA    +
Sbjct: 199 DMPADSLPFVPTEVEVEILTSQPKISQEEINRVKDELRNYTDRVNKGETTFSTLARLYSE 258

Query: 306 SLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                 +G    ++   + D + A+  F+L      + ++   FGY I  + + +     
Sbjct: 259 DPGTARMGGELDYTGRGMLDPAFANVAFNLTDPKKISKIVESEFGYHIIQLIDKRGDKIK 318

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISR 406
               V+  +   +  ++A +        + ++  A   S +  + 
Sbjct: 319 ----VRHILRKPVVSSEALDASIHRLDSIGDDIRAGKFSFEAAAS 359


>gi|153803547|ref|ZP_01958133.1| survival protein SurA [Vibrio cholerae MZO-3]
 gi|297580585|ref|ZP_06942511.1| survival protein SurA [Vibrio cholerae RC385]
 gi|124120914|gb|EAY39657.1| survival protein SurA [Vibrio cholerae MZO-3]
 gi|297535001|gb|EFH73836.1| survival protein SurA [Vibrio cholerae RC385]
          Length = 431

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S  V V    +  S   ++ K       Q           +   L +++L+ L+     
Sbjct: 28  DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG++ D  R+   I        K+N+ + +  ++ +A+EG+   E+        
Sbjct: 83  QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  V          + L+  +      E  ++  ++         A  ++A +      
Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      +IS+I   V + + K                                  
Sbjct: 176 ----------YKISHIQLRVDDGQDKS-------------------------------AA 194

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  A++    L+ G  F Q+A    K   +L     G   KE +P    AD I  +  KG
Sbjct: 195 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389
                     G+ I  + ++K   TV+  EV       K  I   +    A +++ E  +
Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310

Query: 390 RLEEFLALGTSMDEISRRE 408
           R++       +  E++++ 
Sbjct: 311 RIKN---GEVTFAELAQQY 326


>gi|206562085|ref|YP_002232848.1| putative peptidylprolyl isomerase [Burkholderia cenocepacia J2315]
 gi|198038125|emb|CAR54073.1| putative peptidylprolyl isomerase [Burkholderia cenocepacia J2315]
          Length = 280

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 73/236 (30%), Gaps = 11/236 (4%)

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
           V   V     +   +D       +  + +      R + A      A     +    +  
Sbjct: 39  VEAVVNDTPIARSDVDSMIEATGQTVTPELRAQAKRELIAQHLVEQAAEKANYGSRPEVN 98

Query: 225 RAP-EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           R     + ++     + +      +++ +++A Y+         E R  + +   +  E 
Sbjct: 99  RVVMRARTVAATDLYLRDNVHPQAVTDAQVKARYDDIVANAAQFEYR-ADVIAVADPAEV 157

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF--------SKEYIPDVSLADSIFSLAKK 335
           +     LK+G  F  +A++   + +                K     + LA +I SL + 
Sbjct: 158 NALVAELKQGAAFDAVAKKYNTTPNGGVAQWVELRTPVAEGKTGGLPLPLAQAITSL-QP 216

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G     I     + I  +   + +   +F+  K  +  Q+        +     +L
Sbjct: 217 GAVAGPIRVGNAFAIVKLDEKRATVVPTFEAAKNVLRQQLEGQAQQRAMTALVDKL 272


>gi|114799826|ref|YP_761850.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Hyphomonas neptunium ATCC 15444]
 gi|114740000|gb|ABI78125.1| PPIC-type PPIASE domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 303

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 62/173 (35%), Gaps = 7/173 (4%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           +++++ +   Y +        +  +V  +V   ++EA+  +  ++ G+ F  L       
Sbjct: 129 QVTDEMIDRMYAEQVRLQQVNDEVSVAHIVTDTEEEAEAVWLRVQAGEAFESLVFNHSND 188

Query: 307 LS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
            +    +  LG  S   +PD      + +    G+  P       + I  V + +     
Sbjct: 189 SATRMENGDLGFVSPNDLPDPY--PVVIANTPVGEVAPPFEAEGSWRIVKVKDRRTEPPK 246

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD-EISRREKIVSID 414
           +  E++ +IA  + +++ S  ++            G     E +      ++ 
Sbjct: 247 TRDEMRPEIATFLTLSEVSRILRRLRTEARIEEGGGADYAPENAPEPSAKALT 299



 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 46/145 (31%), Gaps = 14/145 (9%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
              +V  + +  +        E+  +++ +     S RA       ++LD L+    + Q
Sbjct: 40  VAATVNGEAIYTADV------EVEAVARGLVVSGASLRAEDEAYK-QVLDQLIDQKLMAQ 92

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
             + +GLE D   +               +   ++ V  +  E + ++     Y + +  
Sbjct: 93  EAKRLGLEKDPAGMRR-------LEMAQERIMGNLLVESVVAEQVTDEMIDRMYAEQVRL 145

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFY 186
             V          ++   +    + 
Sbjct: 146 QQVNDEVSVAHIVTDTEEEAEAVWL 170


>gi|300728349|ref|ZP_07061713.1| conserved hypothetical protein [Prevotella bryantii B14]
 gi|299774385|gb|EFI71013.1| conserved hypothetical protein [Prevotella bryantii B14]
          Length = 714

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/506 (11%), Positives = 151/506 (29%), Gaps = 90/506 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56
           L  IRK  R  +    +      F+     +A  S   S       V  V  +K+  + F
Sbjct: 4   LGTIRK--RGVILICIIGFGLFAFI---AEEAFRSCESSKNDQRQQVGEVLGEKISVTDF 58

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                +   +I  + G     E  +   +   + +  V    ++   +++GL    G + 
Sbjct: 59  QKLVDEYTEVIKMQQGTDNLPEE-QMNQVKDMVWNTYVQSKLVENEAKELGLTVTDGELQ 117

Query: 117 G--------EIARSPLFHGKDNKFSHDVFVSRL--------AREGINEKEY--------- 151
                     + ++P  + +  +F        L        A+     ++Y         
Sbjct: 118 NILNEGTNPMLLQTPFVNQQTGRFDASSLKKFLADYKSNQSAQNPQMAEQYQKIYNYWTF 177

Query: 152 -IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPS 209
                 +         +       + +    A +   E  S+         +  A     
Sbjct: 178 IEKTLRQQTLAQKYQNLLAHCFISNPVEAKMAFKEENEESSIQLASFPYSDIQDAKIKVE 237

Query: 210 NAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            + +   +E+ K  ++   E + + YI         +++ S+ +                
Sbjct: 238 ESDMKAKYEELKARFKQAIESRDVKYIDV-------QVKASSSD---------------- 274

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
            R   Q  F +        + L   +   ++  + G S++ + +   +K+  P   +A  
Sbjct: 275 -RLALQKQFAD------FQKKLAAAEDPTEILHKSGTSVNYLGI-PVAKDAFP-TDIAAQ 325

Query: 329 IFSLAKKGDFTPVIHG--SFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKAS-EKV 384
           + S+A  G  + V          I  +   +        E+   I    ++++ A+ E  
Sbjct: 326 LDSMA-VGSTSAVKANAQDNTLNIIKLIAKQ--------ELPDSIQFRTIQVSGATPEAA 376

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
            +    +   L  G   + ++++         +     +     +     Y   L     
Sbjct: 377 HKTADSIYTALQGGAEFEALAKKYGQTGEKTWMTTKQYQFAPSMDKDTKTYISAL----- 431

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKE 470
             +  ++    +AL  G+ +   + +
Sbjct: 432 -NNAAVNSYENIALGQGNVILQVVDK 456



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 110/345 (31%), Gaps = 19/345 (5%)

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLA 333
              K AD  + +L+ G +F  LA++ G++     + +    F+     D     S  + A
Sbjct: 375 AAHKTADSIYTALQGGAEFEALAKKYGQTGEKTWMTTKQYQFAPSMDKDTKTYISALNNA 434

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
               +  +  G  G VI  V + K         V   I   +    + +  +  Y ++  
Sbjct: 435 AVNSYENIALGQ-GNVILQVVDKKGMINKYTAAV---IKKTI--DFSQDTYRAAYNKISS 488

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
           F++   + +++ +        +   +          VA I      L  VF  D+     
Sbjct: 489 FVSANQNGEDLLKNAAKNGYTVQEAND--MTTSLHYVANIHSTRDALKWVFDADEKEESP 546

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
                 +   + + + +   A  R L   +V   VK +    K AE++ +K     ++  
Sbjct: 547 LYECGDNDHLLVMVLNKIHRAGYRDLSDPQVREMVKAEVIKDKKAEQIIAK-----VKGV 601

Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571
           K     +  G  +      T                    V +         P++     
Sbjct: 602 KSIAAAKAKGAKVAPVNQVTFAAPVFIASVGASEPALSGAVSATAKGKFVSHPVKGNAGV 661

Query: 572 VVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
            +F+VTN    PV+  +K +    +        + +  L     V
Sbjct: 662 YLFQVTNKTNRPVKFDEKAMEQKLRQRAMQYAGNFMNELYLNAKV 706


>gi|261250209|ref|ZP_05942785.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio orientalis CIP
           102891]
 gi|260939325|gb|EEX95311.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio orientalis CIP
           102891]
          Length = 432

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 124/388 (31%), Gaps = 99/388 (25%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            +  V V    V  S    S K  L   ++K G  + SE      L +++ + L+     
Sbjct: 28  DTVAVIVNTSVVLQSDIDTSIKT-LKANAKKKGQSLPSEEI----LTEQVTEKLIVDTIQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E +G+  D  R+   I+       K+N+ + +   + +A EG+N  E+ +   K +
Sbjct: 83  QQEAERLGVRIDDNRLNEAISEI----AKNNQQTVEQLRASIASEGLNYAEFREQIRKEI 138

Query: 160 SRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           + ++     V   +      +D       +                    +NA +     
Sbjct: 139 AASEARNALVRRRINILPAEVDNLSELLAQE-------------------TNATVQ---- 175

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                       +I +I   V++ + K EI                              
Sbjct: 176 -----------YKIGHIQLRVNDGDDKSEI------------------------------ 194

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            + +A E  + L  G  F  +A       K+L     G   KE +P    AD I  L  K
Sbjct: 195 -EAQAKELVKELNNGADFSTMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KLQNK 251

Query: 336 GDFTPVIHGSFGYVIAHVSN------------------IKPSFTVSFQEVKKDIANQMRI 377
           G          G+ I  + +                  IKP+  +S + VK  + N +R 
Sbjct: 252 GSVIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGVKNTLNNIIRQ 311

Query: 378 TKASEK-VKEDYKRLEEFLALGTSMDEI 404
            KA +    E  ++  +         E+
Sbjct: 312 IKAGDATFGELAQQYSQDPGSAAQNGEL 339


>gi|260878025|ref|ZP_05890380.1| chaperone protein SurA [Vibrio parahaemolyticus AN-5034]
 gi|308089886|gb|EFO39581.1| chaperone protein SurA [Vibrio parahaemolyticus AN-5034]
          Length = 427

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 115/378 (30%), Gaps = 88/378 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    +  S    + K       Q  G  + S       L +++++ L+     
Sbjct: 25  DKVAVIVNDGVILQSDINTAMKTLQANARQS-GKSLPSASV----LKEQVVEKLIIDTLQ 79

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG+  D  R+   IA       ++N  S +   + +  EG++  E+        
Sbjct: 80  GQEADRIGVRIDDNRLNQAIAEI----ARNNNQSVEELAASVQAEGLSYPEF-------- 127

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFE 218
            R  +                   R     R ++ +      +    A  +NA +     
Sbjct: 128 -REQIRKEIAAS----------EARNALVRRRINILPAEVDSLADQLAKETNATVQ---- 172

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                       +I +I     + + K E+                              
Sbjct: 173 -----------YKIGHIQLRFTDGQDKSEV------------------------------ 191

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            + +A    + L  G  F ++A    K   +L     G   KE +P    AD I  +  K
Sbjct: 192 -EAQAKALVKKLNDGADFTEMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNK 248

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKR 390
           G          G+ I  + ++K   TV+  EV      I     +    A  ++ E  +R
Sbjct: 249 GSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGAKNQLNEFVRR 308

Query: 391 LEEFLALGTSMDEISRRE 408
           ++   A   +  +++ + 
Sbjct: 309 IK---AGEATFAQLASQY 323


>gi|330836698|ref|YP_004411339.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           coccoides DSM 17374]
 gi|329748601|gb|AEC01957.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           coccoides DSM 17374]
          Length = 92

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++   +  AD  +  +K G  F  LA       S      LG F    +       
Sbjct: 4   KASHILVKEKALADRLYAQIKGGADFSSLARTHSTCPSKSKGGDLGWFGPGKMVG-EFER 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  L+  G  +  I   FGY I   + ++
Sbjct: 63  AVQKLS-HGAVSAPIRTQFGYHIIKKTGLR 91


>gi|327312390|ref|YP_004327827.1| hypothetical protein HMPREF9137_0079 [Prevotella denticola F0289]
 gi|326946353|gb|AEA22238.1| conserved hypothetical protein [Prevotella denticola F0289]
          Length = 715

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 79/636 (12%), Positives = 195/636 (30%), Gaps = 73/636 (11%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG-----SSTVVSVGRQKVPFSSF 56
           L  IR  S+  +    + +    FL     +   S +G        +  +  +K+    +
Sbjct: 4   LGKIR--SKGGMLVAAIGLALFAFL---AEEGFRSCNGIKGEARQQIGEILGEKISVQDY 58

Query: 57  INSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
                +    I        +  E      +  ++   LVS   L    E +GL      +
Sbjct: 59  QKLIDEYQSAIKFTMQRDNLTEEELNQ--VKDQVWQQLVSNRVLQADAEKVGLTVTEQEI 116

Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
                      +A++P  + +  +F  +     L   G N+ +                 
Sbjct: 117 QNVLNDGTNPMLAQTPFVNQQTGRFDVNALKQFLD--GYNKAKSEKS-----------PQ 163

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
                   +  L   K    +     Y  L    V +           + +  +++    
Sbjct: 164 LDQMQTVYDYWLFIEKNLRTQLLGQKYQALLASCVLSNKA---EAKMAFKDNNEES---- 216

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVE----QLVFPNQ-- 280
              +++ + +   +    I+I++++L+A+Y++ K  +    E R ++    Q+       
Sbjct: 217 -QIQLASLAYSSVKDAD-IKITDEDLKAKYDELKPAFRQNVETRDIKFVDYQIKASTADR 274

Query: 281 ----KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
               KE +   + L        +  + G  +  + +   SK Y     +A  I SLA   
Sbjct: 275 NAVVKEMNGLQKQLATAADPATVVSKSGSEIPYLGVPVSSKAYRQYPDIASRIDSLAVGT 334

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
                        I  V +   +                      ++ +     +++ LA
Sbjct: 335 TGVTENKQDNTLNIIRVLS--KAQLPD----SVQFRQIQVAANTPDEARAKADSIQKALA 388

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
            G   + +++R       +       +           Y   LL         ++    +
Sbjct: 389 GGADFEALAKRYGQTGEKVWFTGQQYEAAPSMSQDNRTYINALLS------GEVNATQNI 442

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
           AL  G+ + +Q+ +      +    V+  +    K   T  E  ++ ++ V + +    +
Sbjct: 443 ALAQGN-VILQVLDKKAMTTKTTAAVIKKLIDFSKA--TRNEAYNRFSEFVAKNTTA-AD 498

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFF--GYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
                   G  + + N I+  ++         D +  +F      V          +++ 
Sbjct: 499 LEKNASKYGYRVQSLNDISTAEHYVAGIHGTRDALKWLFEAKQGDVSQLYECGDNDHLLV 558

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
            V N+ + P   +    + + +++ ++++    A L
Sbjct: 559 IVLNA-IHPQGFRAWDDAQVKEILKREVMKDKKAEL 593



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/379 (16%), Positives = 122/379 (32%), Gaps = 48/379 (12%)

Query: 262 EKYFSPEIRTVEQLVFPN------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
            K   P+     Q+          + +AD   ++L  G  F  LA+  G++        F
Sbjct: 353 SKAQLPDSVQFRQIQVAANTPDEARAKADSIQKALAGGADFEALAKRYGQT---GEKVWF 409

Query: 316 SKEYIPDVSLADSIFSLAKK----------GDFTPVIHGSF--GYVIAHVSNIKPSFTVS 363
           + +        ++  S+++           G+     + +   G VI  V + K   T +
Sbjct: 410 TGQQY------EAAPSMSQDNRTYINALLSGEVNATQNIALAQGNVILQVLDKKAMTTKT 463

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
              V   I   +  +KA+    E Y R  EF+A  T+  ++ +        +  ++    
Sbjct: 464 TAAV---IKKLIDFSKATR--NEAYNRFSEFVAKNTTAADLEKNASKYGYRVQSLNDIST 518

Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
                 VA I      L  +F               +   + + +    P   R  ++  
Sbjct: 519 AEHY--VAGIHGTRDALKWLFEAKQGDVSQLYECGDNDHLLVIVLNAIHPQGFRAWDD-- 574

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----N 539
             VK+  K     E +  K  +L++   K G +     +  GA + T NQI         
Sbjct: 575 AQVKEILKR----EVMKDKKAELLMAKLK-GVSSIAAAQAKGAKVSTVNQITFASPAFVQ 629

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS--KVGPVQEKDKFISYLTQM 597
                       V +         P++      VF+V     + G    +   +    Q 
Sbjct: 630 ATGAVEPALSGAVAATAAGKFSKAPVKGNAGVYVFQVVKKAMRAGSKYNELMVMQQTAQQ 689

Query: 598 MNKDLLDSVIAYLKSQYSV 616
             + ++ + +  L  + +V
Sbjct: 690 NMQ-MVGNFMQDLILKANV 707


>gi|193214032|ref|YP_001995231.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087509|gb|ACF12784.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 728

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/437 (13%), Positives = 135/437 (30%), Gaps = 65/437 (14%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K+F   LF   ++     +L  +     V       +    +  +   +        G  
Sbjct: 12  KLFFAALFSASILTACGGSLSQLP----VAK-----IEQPGWEYAVDLQEFESKYNDGTF 62

Query: 75  VNSERAR-SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +    R +    +  LD  ++     +  +D G       +  E+              
Sbjct: 63  FSDTLRRDTFAAYQDFLDKYITFRLKVKDAQDRGFG-QDPSLLQELKD------------ 109

Query: 134 HDVFVSRLAREGINEK--------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
              + ++LA   + E+        +  D   + ++ + ++ +      P++ L    K  
Sbjct: 110 ---YRAQLAEPYLMERAVMEKNLRDLYDKQQEEINASHILALVSSAADPADTLRAYQKIM 166

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
                 +     ++  +    DPS           K N        + Y   D     K 
Sbjct: 167 EARKLILAGAPFDSVALAFSEDPSVRQ-------NKGNLGYFSGGMMVYQFEDAAYGGKV 219

Query: 246 IE-ISNDELQAEYEKNKEKYFSPEIR--TVEQLVFPNQK------------EADEAFQSL 290
            E +     +  Y   K     P+ +      ++    K            +A+   + +
Sbjct: 220 GELVGPFRTRYGYHIVKIYDRRPKTQPIRASHIMVALPKSPTPSDTLKAYRKAESILRRI 279

Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           +KG+ F  +A+++            LG F    +       + F+L + GD +P+I   F
Sbjct: 280 QKGEDFQSIAKKESDDKLSGARGGDLGLFGLNRMVKP-FETAAFALKQAGDLSPIIRTPF 338

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           GY I  ++  +     S+ E K+ +   +     SEK+K +     + L       E   
Sbjct: 339 GYHIILLTGREEP--KSYDESKELLKRLLSRN--SEKLKHERDLFIQQLKETYHFKENES 394

Query: 407 REKIVSIDLPLVDFAGK 423
              +++  +       +
Sbjct: 395 ALPMLTAKIDSNSTFAQ 411



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 69/212 (32%), Gaps = 15/212 (7%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI------- 246
              +++  V + A  +++    ++  +K ++R  E  ++S I+         I       
Sbjct: 497 LFKVSDETVWSQAAATDSAGRAYYATHKGDFRLGERMKVSEIVVSEKSLADDIYNELTQN 556

Query: 247 -------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                     + ++Q    + + +          QL F   +E     Q   + + F  L
Sbjct: 557 IRQRDVVSAQDVKIQKRKIQAQLRKLKKRRDKKSQLKFQKLQEQLTGLQVDDQPRSFEAL 616

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           A    ++   +     +     +    D +F     G        +  Y I  +  + P 
Sbjct: 617 AARYSETADSLGSAESAIFNRGENRRVDKLFG-KPVGFVAAPESINERYRIMRLDIMLPP 675

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              +++E + +I + ++         E   RL
Sbjct: 676 TEKTYEEARTEIFSILQEQNTRALETEWVNRL 707


>gi|326575894|gb|EGE25817.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           CO72]
          Length = 434

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/405 (14%), Positives = 122/405 (30%), Gaps = 74/405 (18%)

Query: 31  SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
             ++   S    V  V  + +  S    +  + +    QK G  V  ++A+++      L
Sbjct: 23  QASISGNSHDGIVAVVNDEIILKSELNQA-TELVATEIQKNGGNVTQDQAQTL-----AL 76

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI-NEK 149
           D L++       I   G+  +   +  ++ +     G +   S   F S+L  E   +  
Sbjct: 77  DELINEKLQLAIINRAGVVPNDEVIDQQLLQIAQSQGVN---SLSEFQSKLDAERAGSYA 133

Query: 150 EYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFENR--SVDYIVL--------- 197
               +  +  +   +        +R ++  +D         R   V Y +L         
Sbjct: 134 ALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRLLHIRVPYLDN 193

Query: 198 --------NNRHVPAIADPS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
                       V      S       +  +      Y  + +  +   I+         
Sbjct: 194 TASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLINATALPPAIA 253

Query: 243 EKK------------IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQK 281
            K             + ++  ++     K ++            ++            ++
Sbjct: 254 AKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSSDIAEQ 313

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           + +  +Q L++G  F  LA              SLG  ++  +        + + AK GD
Sbjct: 314 KINAIYQQLQQGADFGTLAATYSDDTGSASQHGSLGWVNEGDMV-PEFETMMKNTAK-GD 371

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           F+      FG+ I  V++IK          + DI  Q R   A E
Sbjct: 372 FSTPFRSQFGWHILKVNDIK----------QHDITEQYRRNAAHE 406


>gi|317046370|ref|YP_004114018.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b]
 gi|316947987|gb|ADU67462.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b]
          Length = 93

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++ +A      L+KG  F QLA++     S      LG F K  +   +   ++F
Sbjct: 9   HILVKDEAKAKALLAQLEKGANFQQLAKKHSTCPSGRNGGDLGEFRKGQMV-PAFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L +       +  +FGY I  V
Sbjct: 68  SCPLLQP---YGPVKTAFGYHIIKV 89


>gi|229823923|ref|ZP_04449992.1| hypothetical protein GCWU000282_01227 [Catonella morbi ATCC 51271]
 gi|229786656|gb|EEP22770.1| hypothetical protein GCWU000282_01227 [Catonella morbi ATCC 51271]
          Length = 325

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 67/196 (34%), Gaps = 13/196 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               K+I+ S+  ++  Y    +          + ++   ++EA +    L  G+ F +L
Sbjct: 128 EVVSKQIDQSDATIEDYYNNTYQP-----KMEAQHILVDTEEEAKDIISKLDAGENFDEL 182

Query: 300 AE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A+   + G +     L  F+   +      D +   A        +   FGY I     I
Sbjct: 183 AKTYSKDGSAQQGGLLSPFTSGQMVK-EFEDGVKGQANGEYTKTPVKSKFGYHIIK--TI 239

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
                  F ++K D+  +   +K  ++  +   ++   L     +       K    +L 
Sbjct: 240 NNGEKKPFADIKDDVKKEYLDSKLKDQ--KFSYKIIGKLIEAAKVQIDDADLKDAVKELV 297

Query: 417 LVDFAGKDVKGKEVAA 432
            +     DV  ++  +
Sbjct: 298 DLANQPDDVSSQDAPS 313


>gi|261749602|ref|YP_003257288.1| peptidylprolyl cis-trans isomerase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497695|gb|ACX84145.1| peptidylprolyl cis-trans isomerase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 710

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 94/284 (33%), Gaps = 35/284 (12%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           LE IRK    W+    + ++ + F++       F    SS    V  + +    +++ ++
Sbjct: 4   LEKIRK--NPWILFFLIGIVMLAFILDPHVLFKFFAEKSSIFGKVNGENISIKEYVDCFQ 61

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
             L  + Q               L K+  + L+    L+Q    +G++      W  I+R
Sbjct: 62  F-LKQLRQ---------EESDSHLKKETWNLLIHEKLLNQQAMKLGIQNTKKDFWDAISR 111

Query: 122 ------SPLFHGKDNKFSHDVFVSRLAR----EGINEKEYI----------DHYTKMLSR 161
                  P    K        F   L        ++  +            +  +K +  
Sbjct: 112 QSIYSYIPELQDKFGNLDLKKFQLYLKNLENASHVSHSQMEIEKNVWSYEKNSISKRILA 171

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD---PSNAVLTQWFE 218
              V M + G+  S +  +   +       +DYI +    +    +        +  + +
Sbjct: 172 KKYVEMLMYGLNTSLIEGELNYKEKNFFSIIDYIFIPYSEIEHKYNIFLIGKNEIENFIK 231

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
           K+K  Y+    + +S+ +       +  +   ++++  + K K 
Sbjct: 232 KHKFLYKRENLRSLSFAICRSKPSLEDEKNMKNKMEKLFHKFKS 275



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 80/251 (31%), Gaps = 30/251 (11%)

Query: 273 EQLVFP-----------NQKEADEAFQSL-----KKGKKFIQLAEEQGKSL-----SDIS 311
             ++              +KEA+E    +     K   KF +L  ++   L     +  S
Sbjct: 346 SHILISHKEAIRSSNKRTKKEAEEIANKVYKILQKDPSKFEELVRKKSDDLINAKKNQGS 405

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           LG         +   + IF    K     +    FGY I  + +   S      +    +
Sbjct: 406 LGWLKYNEQNSIGKFN-IFDSENKKRMIGLTETQFGYHIIRIDD--KSVPKPAYQFAVIV 462

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEI--SRREKIVSIDLPLVDFAGKDVKGKE 429
              +   K  +++    ++             I  +R+E   +I L  V  A  D+    
Sbjct: 463 KTLIPSKKTEDRLYSRVRKFFGKNKNHKLNIFINNARKEGYETIFLKYVRSAQWDIDD-- 520

Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
                  ++++   F K+      H  +  +  Y+ V + +        +EE+  ++   
Sbjct: 521 -LKTEVDKEIIDWSFDKNRKEGDCHIFSTSNKDYIIVFLSKIQKEGF-SMEEIKNNLIPF 578

Query: 490 WKTVKTAEEVS 500
            K  K    +S
Sbjct: 579 LKKEKINRLLS 589


>gi|114048604|ref|YP_739154.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
 gi|121956474|sp|Q0HS08|SURA_SHESR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|113890046|gb|ABI44097.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
          Length = 434

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 115/382 (30%), Gaps = 71/382 (18%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
              N        L  ++++ L+      Q  + IGL     ++   I           K 
Sbjct: 56  RAANQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KM 111

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN-- 189
           +      ++  EG++  +Y +   + ++  ++        ++ S   +    +   E   
Sbjct: 112 TVAQMQQKIESEGLSFGQYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGM 171

Query: 190 RSVDY------IVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRAPEYKRIS-------- 233
           + V+Y      I + N       + S+       E+ K  +++R       S        
Sbjct: 172 KDVEYQIGHILIDVPNNPNSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGG 231

Query: 234 ---YILFDVHEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQL 275
              Y+  +         I+  +               +    +    +    E      +
Sbjct: 232 IWDYMNINEMPTLFAEVINGAKKGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHI 291

Query: 276 VFP-----NQKEADEAFQS----LKKGK-KFIQLAEEQGKSLSDISLGS---FSKEYIPD 322
           +       ++  A    +     ++ G+ KF  LA +  +     + G    +++  I  
Sbjct: 292 LLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSATKGGELGWAEPSIYV 351

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
              A ++ SL+     +     + G+ I  +   +          K D  +Q    +A +
Sbjct: 352 PEFAQTLNSLS-PDQISEPFRTTHGWHITQLEERR----------KTDATDQFNTNRAHQ 400

Query: 383 KV------KEDYKRLEEFLALG 398
            +      +E    L+E  A  
Sbjct: 401 LIFRRKFNEELQNWLDEMRADA 422


>gi|325205366|gb|ADZ00819.1| surA/PPIASE domain protein [Neisseria meningitidis M04-240196]
          Length = 387

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 172 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 231

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 232 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 291

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 292 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 349

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 350 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 378


>gi|325203397|gb|ADY98850.1| PPIC-type PPIASE domain protein [Neisseria meningitidis M01-240355]
          Length = 366

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 151 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 210

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 211 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 270

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 271 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 328

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 329 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 357


>gi|325199485|gb|ADY94940.1| PPIC-type PPIASE domain protein [Neisseria meningitidis H44/76]
          Length = 360

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 145 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 204

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 205 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 264

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 265 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 322

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 323 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 351


>gi|325197566|gb|ADY93022.1| PPIC-type PPIASE domain protein [Neisseria meningitidis G2136]
          Length = 360

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 145 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 204

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 205 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 264

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 265 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 322

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 323 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 351


>gi|325145275|gb|EGC67554.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis
           M01-240013]
          Length = 369

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 154 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 213

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 214 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 273

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 274 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 331

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 332 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 360


>gi|325143121|gb|EGC65468.1| PPIC-type PPIASE domain protein [Neisseria meningitidis 961-5945]
          Length = 363

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 148 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 207

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 208 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 267

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 268 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 325

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 326 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 354


>gi|325141118|gb|EGC63621.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis CU385]
          Length = 357

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 142 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 201

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 202 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 261

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 262 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 319

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 320 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 348


>gi|325135085|gb|EGC57713.1| PPIC-type PPIASE domain protein [Neisseria meningitidis M13399]
          Length = 363

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 148 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 207

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 208 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 267

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 268 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 325

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 326 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 354


>gi|325128991|gb|EGC51842.1| surA/PPIASE domain protein [Neisseria meningitidis N1568]
          Length = 390

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 175 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 234

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 235 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 294

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 295 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 352

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 353 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 381


>gi|261391812|emb|CAX49267.1| putative peptidylprolyl isomerase (peptidyl-prolyl cis-trans
           isomerase; PPIase; rotamase; cyclophilin; FKBP65)
           [Neisseria meningitidis 8013]
          Length = 354

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 139 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 198

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 199 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 258

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 259 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 316

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 317 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 345


>gi|254674145|emb|CBA09929.1| PPIC-type PPIASE domain protein [Neisseria meningitidis alpha275]
          Length = 378

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 163 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 222

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 223 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 282

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 283 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 340

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 341 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 369


>gi|15676205|ref|NP_273337.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis MC58]
 gi|7225507|gb|AAF40735.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis MC58]
          Length = 348

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 133 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 192

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 193 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 252

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 253 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 310

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 311 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 339


>gi|238024473|ref|YP_002908705.1| hypothetical protein bglu_2g10690 [Burkholderia glumae BGR1]
 gi|237879138|gb|ACR31470.1| Hypothetical protein bglu_2g10690 [Burkholderia glumae BGR1]
          Length = 278

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 31/187 (16%)

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
            +      PS A ++ ++ K+K +Y       +S+IL                    +EK
Sbjct: 112 DYFMRQITPSEAEISAYYNKHKSDYNL---YSLSHILVK------------------FEK 150

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319
           +     + + + +E   F    +A      LK G  F +LA +     +    G    E 
Sbjct: 151 DPSNLPAEQAKKIEAQAFN---KAQAIEARLKAGADFHELAAQLSDDANSRIDGGRVPET 207

Query: 320 IP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           +      +    I + AK+GD TP +  SFGY I  V  + PS        + D+ N +R
Sbjct: 208 MARFLAPAFKPEILA-AKQGDITPPLKSSFGYHIIMVEGVVPS---DMARNRADVINDIR 263

Query: 377 ITKASEK 383
             K +EK
Sbjct: 264 EGKLAEK 270


>gi|42519550|ref|NP_965480.1| peptidylprolyl isomerase [Lactobacillus johnsonii NCC 533]
 gi|46396699|sp|P60750|PRSA1_LACJO RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|41583839|gb|AAS09446.1| protease maturation protein precursor [Lactobacillus johnsonii NCC
           533]
 gi|329667789|gb|AEB93737.1| protease maturation protein precursor [Lactobacillus johnsonii DPC
           6026]
          Length = 298

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 17/228 (7%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
           G +  S       +    ++     IV +        D +   + + + KYK  Y +   
Sbjct: 36  GKITESQYYDKMKESQAGQSTLASMIVSDALESQYGKDVTQKQVDKEYNKYKKQYGSQFD 95

Query: 230 KRISYILFDVHEKEKKIE---ISNDELQA------EYEKNKEKYFSPEIRTVEQLVFPNQ 280
             +          +  ++   ++   L+         EK   K + PE+ TV+ ++   +
Sbjct: 96  SVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQEKKAWKNYQPEV-TVQHILVSKK 154

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF-SKEYIPDVSLADSIFSLAKK 335
             A++  + L+ G  F +LA++             L +F S +   D S   + F L   
Sbjct: 155 STAEDVIKQLQDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTG 214

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              T  +   +GY +  +  IK     +F+E KK I NQ+  + + ++
Sbjct: 215 EITTTPVKTQYGYHVIKM--IKHPAKGTFKEHKKQIDNQIYQSMSEDQ 260



 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 7/131 (5%)

Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMV 560
            + V++  ++G +F+ + K       T N    +   D+ +        +  F      +
Sbjct: 157 AEDVIKQLQDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGEI 216

Query: 561 KCFPIENGLSYVVFKVTNSKVGPV--QEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSV 616
              P++    Y V K+          + K +  + + Q M++D  ++ SVIA +  +  V
Sbjct: 217 TTTPVKTQYGYHVIKMIKHPAKGTFKEHKKQIDNQIYQSMSEDQNVMRSVIATVLKRADV 276

Query: 617 TVHDNLIQRYL 627
           ++ D  ++  L
Sbjct: 277 SIKDKDLKNVL 287


>gi|28897112|ref|NP_796717.1| survival protein SurA [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838965|ref|ZP_01991632.1| chaperone SurA [Vibrio parahaemolyticus AQ3810]
 gi|260361686|ref|ZP_05774713.1| chaperone protein SurA [Vibrio parahaemolyticus K5030]
 gi|260896920|ref|ZP_05905416.1| chaperone protein SurA [Vibrio parahaemolyticus Peru-466]
 gi|260903392|ref|ZP_05911787.1| chaperone protein SurA [Vibrio parahaemolyticus AQ4037]
 gi|81728608|sp|Q87ST4|SURA_VIBPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|28805321|dbj|BAC58601.1| survival protein SurA [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747553|gb|EDM58485.1| chaperone SurA [Vibrio parahaemolyticus AQ3810]
 gi|308088746|gb|EFO38441.1| chaperone protein SurA [Vibrio parahaemolyticus Peru-466]
 gi|308109029|gb|EFO46569.1| chaperone protein SurA [Vibrio parahaemolyticus AQ4037]
 gi|308115514|gb|EFO53054.1| chaperone protein SurA [Vibrio parahaemolyticus K5030]
 gi|328471910|gb|EGF42787.1| survival protein SurA [Vibrio parahaemolyticus 10329]
          Length = 427

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 116/378 (30%), Gaps = 88/378 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    +  S    + K       Q  G  + S       L +++++ L+     
Sbjct: 25  DKVAVIVNDGVILQSDINTAMKTLQANARQS-GKSLPSASV----LKEQVVEKLIIDTLQ 79

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG+  D  R+   IA       ++N  S +   + +  EG++  E+        
Sbjct: 80  GQEADRIGVRIDDNRLNQAIAEI----ARNNNQSVEELAASVQAEGLSYPEF-------- 127

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFE 218
            R  +                   R     R ++ +      +    A  +NA +     
Sbjct: 128 -REQIRKEIAAS----------EARNALVRRRINILPAEVDSLADQLAKETNATVQ---- 172

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                       +I +I     + + K E+                              
Sbjct: 173 -----------YKIGHIQLRFTDGQDKSEV------------------------------ 191

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            + +A    + L  G  F ++A    K   +L     G   KE +P    AD I  +  K
Sbjct: 192 -EAQAKALVKKLNDGADFTEMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNK 248

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKR 390
           G          G+ I  + ++K   TV+  EV      I     +    A +++ E  +R
Sbjct: 249 GSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGAKKQLNEFVRR 308

Query: 391 LEEFLALGTSMDEISRRE 408
           ++   A   +  +++ + 
Sbjct: 309 IK---AGEATFAQLASQY 323


>gi|54307618|ref|YP_128638.1| putative survival protein SurA [Photobacterium profundum SS9]
 gi|81697526|sp|Q6LV39|SURA_PHOPR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|46912041|emb|CAG18836.1| putative survival protein SurA [Photobacterium profundum SS9]
          Length = 434

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 77/492 (15%), Positives = 144/492 (29%), Gaps = 97/492 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S      +      +++     N        L +++++ L+     
Sbjct: 28  DKVVTLVNDSVILQSDVNAMLQTVRINAAEQ-----NQPLPDDALLTEQVMEKLIIETLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+  D  R+   +A       K+ + +       L + GI+   + +   + +
Sbjct: 83  LQQAEQFGIRIDDTRLDQAVAEI----AKERELTIPQLQKELEKSGISYSIFREQMRRDM 138

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +                           E R++  +      +P   +     L      
Sbjct: 139 T-------------------------ASEARTIQ-VRRRINILPQEVEMLAEQL------ 166

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            K   +      IS+I   V E   K                      E R         
Sbjct: 167 NKQTLQTV-QFNISHIQLRVEEGATK----------------------EQRE------ET 197

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           Q++A +    LK G  F  LA       K+L     G   +E +P    AD I S   KG
Sbjct: 198 QQQAQQIVDELKNGADFANLAYSYSKGPKALQGGEWGWMRQEEMP-TIFADQIKS-NGKG 255

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKRL 391
                     GY I  V+++K   TVS  EV      I     +    A  ++++     
Sbjct: 256 AIIGPFRSGVGYHIIKVNDVKGLETVSVTEVNARHILIKTSVILSDDGAKRQLEKAR--- 312

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
           ++ LA   +    +   + +S D       G+         +P  +  +  +     P  
Sbjct: 313 QDILAGRQTF---ADEAQKLSSDPGSAANGGELGWQTPDLYVPEFKDKIETL-----PKG 364

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
                      +  V++ +     DR    +     +   + K  EE  +   +L     
Sbjct: 365 TISEPFKTVHGWHIVEVLDRRNV-DRTDAAMKNRAYRILFSRKFNEEAQAWLQEL----- 418

Query: 512 KEGKNFRDIGKN 523
           + G     +G N
Sbjct: 419 RAGAYIEQLGTN 430


>gi|316985214|gb|EFV64166.1| PPIC-type PPIASE domain protein [Neisseria meningitidis H44/76]
          Length = 359

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 144 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 203

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 204 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 263

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 264 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 321

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 322 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 350


>gi|161870782|ref|YP_001599955.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442]
 gi|161596335|gb|ABX73995.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442]
          Length = 353

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 138 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 197

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 198 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 257

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 258 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 315

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 316 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 344


>gi|121606645|ref|YP_983974.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595614|gb|ABM39053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
          Length = 282

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 22/177 (12%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK---------EADEAFQSL----KKG 293
           + + DE Q  YE N  ++   +   V  ++F              A++A   L       
Sbjct: 99  QPNEDECQRYYEANPSQFMVGQALHVRHILFAVTPGVNVHALTIHAEKALLELTRKDASP 158

Query: 294 KKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIF----SLAKKGDFTPVIHGSF 346
           ++F+QLA E      S     LG    +      LA+ +F    S    G    +IH  F
Sbjct: 159 ERFVQLAAELSNCPTSAQGGDLGWVGPDDCA-PELANELFHQKHSQWGMGVHPRLIHTRF 217

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-KASEKVKEDYKRLEEFLALGTSMD 402
           G+ I  V N +   T ++ EV++ IA  + +  +A    +     + E L  G +++
Sbjct: 218 GFHIIEVLNRRAGKTPAYAEVRERIATLLAVQSRARALHQYMSLLIGEALVEGIALE 274


>gi|302381139|ref|YP_003816962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302191767|gb|ADK99338.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 317

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 6/149 (4%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS- 306
           I++  +Q  Y++      + E   V  ++   + EAD     L +G  F  +A+E+    
Sbjct: 128 INDQAVQTLYQEQLRLARTSEEIRVRLILSRTKPEADAVIGILGQGASFEAVAQERSIDE 187

Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               S   LG  + + +P           A  G          G+ +  V + +     +
Sbjct: 188 ATRFSGGDLGYSTADVMPQAYAG--ALRDAPAGSTVGPFQTEGGWAVLRVEDRRRESPPT 245

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
             + +  I   +      + ++E   + +
Sbjct: 246 LDQARPQIVRYLTYEGVRQLLEELRGKAK 274



 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 62/202 (30%), Gaps = 26/202 (12%)

Query: 7   KASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
           + SR  +  I    VL +     G  D      G   V  V  Q +  S      ++ + 
Sbjct: 2   RHSRNPLVLIAFSAVLALAACGRGGGDDQPPEPGDRAVARVQDQTIWASDVK---REAVA 58

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH------GRVWGEI 119
                 G  ++     +  L +++LD +V    L +  E  GL+               I
Sbjct: 59  QGLVGEGEPLDI----TSNLFRRVLDEVVDQKLLAREAERRGLDNSALAQRRLEATRERI 114

Query: 120 ARSPLFHG-KDNKFSHD----VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
               L     + + +      ++  +L     +E         +LSRT      V G+  
Sbjct: 115 LGDMLVENVVNGRINDQAVQTLYQEQLRLARTSE---EIRVRLILSRTKPEADAVIGILG 171

Query: 175 SNLLLDQAKRFYFENRSVDYIV 196
                +       + RS+D   
Sbjct: 172 QGASFEAVA----QERSIDEAT 189



 Score = 39.2 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 45/144 (31%), Gaps = 8/144 (5%)

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
            ++R+     + K +   +   L  G S + +++   I         F+G D+       
Sbjct: 148 EEIRVRLILSRTKPEADAVIGILGQGASFEAVAQERSID----EATRFSGGDLGYSTADV 203

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
           +P       R    D P          +G +  +++++        L++    + +    
Sbjct: 204 MPQAYAGALR----DAPAGSTVGPFQTEGGWAVLRVEDRRRESPPTLDQARPQIVRYLTY 259

Query: 493 VKTAEEVSSKANQLVLEYSKEGKN 516
               + +     +  ++     + 
Sbjct: 260 EGVRQLLEELRGKAKVDVLLAAEG 283


>gi|229530289|ref|ZP_04419677.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae 12129(1)]
 gi|229332062|gb|EEN97550.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae 12129(1)]
          Length = 431

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S  V V    +  S   ++ K       Q           +   L +++L+ L+     
Sbjct: 28  DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG++ D  R+   I        K+N+ + +  ++ +A+EG+   E+        
Sbjct: 83  QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAKEGLTYPEF-------- 130

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  V          + L+  +      E  ++  ++         A  ++A +      
Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      +IS+I   V + + K                                  
Sbjct: 176 ----------YKISHIQLRVDDGQDKS-------------------------------AA 194

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  A++    LK G  F Q+A    K   +L     G   KE +P    AD I  +  KG
Sbjct: 195 ETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389
                     G+ I  + ++K   TV+  EV       K  I   +    A +++ E  +
Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310

Query: 390 RLEEFLALGTSMDEISRRE 408
           R++       +  E++++ 
Sbjct: 311 RIKN---GEVTFAELAQQY 326


>gi|330836446|ref|YP_004411087.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           coccoides DSM 17374]
 gi|329748349|gb|AEC01705.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           coccoides DSM 17374]
          Length = 354

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/385 (11%), Positives = 108/385 (28%), Gaps = 91/385 (23%)

Query: 40  SSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           S     V       +         K+     +       ++          ++L+ +++ 
Sbjct: 29  SQPAAVVNLTKNTVITTEQLNAKVKEYQEAAATAGTAAPDAL---------RVLEIMIND 79

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             + Q     G+     +V   +                     L      E++Y    T
Sbjct: 80  ELVMQGSARDGIVITDAQVSQLVVDQ---------------KQTL------EQQYGVTLT 118

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD-YIVLNNRHVPAIAD-PSNAVLT 214
               +  V   F          ++  ++   E   VD Y+      V A    P++  ++
Sbjct: 119 DAQFQQAVTAQFGS--------MEAFRKALKEQLLVDTYVRKAKSDVIAQVKQPTDTEIS 170

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
            +F + +  + +PE  R+S++     E     + ++                        
Sbjct: 171 SFFRQRRSEFFSPESIRLSHVFIPFAEGTDAQKTNDA----------------------- 207

Query: 275 LVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVS--------- 324
               N+        S++ G   F +  ++  +  +   LG        D S         
Sbjct: 208 ----NKATLISLVSSIRSGSLTFEKAVQDYSQDAASRQLGGSIGWLTADNSDVVASLGQG 263

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---------VKKDIANQM 375
             D+ F+L + G  + V+  + GY I    +   +  +   +         V++ I   +
Sbjct: 264 FYDAAFAL-EVGQISNVVESASGYHILKSVSHLDAKMLGLDDTINPETTVTVREYIRQYL 322

Query: 376 RITKASEKVKEDYKRL-EEFLALGT 399
                          L ++  +L  
Sbjct: 323 LAQNQQTAYVNAVNALIQDLRSLAN 347


>gi|229512625|ref|ZP_04402094.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TMA 21]
 gi|229350302|gb|EEO15253.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TMA 21]
          Length = 431

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 61/379 (16%), Positives = 123/379 (32%), Gaps = 90/379 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S  V V    +  S   ++ K       Q           +   L +++L+ L+     
Sbjct: 28  DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG++ D  R+   I        K+N+ + +  ++ +A+EG+   E+        
Sbjct: 83  QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  V          + L+  +      E  ++  ++            ++A +      
Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------TQETDATVQ----- 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      +IS+I   V + + K                                  
Sbjct: 176 ----------YKISHIQLRVDDGQDKS-------------------------------AA 194

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  A++    L+ G  F Q+A    K   +L     G   KE +P    AD I  +  KG
Sbjct: 195 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389
                     G+ I  + ++K   TV+  EV       K  I   +    A +++ E  +
Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310

Query: 390 RLEEFLALGTSMDEISRRE 408
           R++       +  E++++ 
Sbjct: 311 RIKN---GEVTFAELAQQY 326


>gi|238798858|ref|ZP_04642326.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia mollaretii
           ATCC 43969]
 gi|238717308|gb|EEQ09156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia mollaretii
           ATCC 43969]
          Length = 98

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++K+A++    L  G  F +LA++     S      LG F+K  +   +   ++F
Sbjct: 14  HILVDDEKQANDILAQLNNGADFQELAKKFSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 72

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L +       +   FGY I  V
Sbjct: 73  SCELLQP---YGPVKTQFGYHIIKV 94


>gi|156741601|ref|YP_001431730.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232929|gb|ABU57712.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus
           castenholzii DSM 13941]
          Length = 337

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 82/253 (32%), Gaps = 28/253 (11%)

Query: 152 IDHYTKMLSRTDVVGMF--VGGMRPSNLLL-DQAKRFYFENRSVDYIVLNNRHVPAIADP 208
                       +        G+  S+  + +Q +RF  + ++   I L       +  P
Sbjct: 67  EQELVSQFIDQQLTLGLARQRGITVSDADVNEQIERFRQQIQTGSGISLEQAIQEQLGLP 126

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY--EKNKEKYFS 266
             +              +PE++          +  + + +S  +++     E   +    
Sbjct: 127 GES--------------SPEFRLFVTYFLARQKLGETL-VSEVDIRQRISDEVMADTQRM 171

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF---SKEYIPDV 323
            ++ TV  ++   + EA +  + L KG+ F  LA+E  +       G      +      
Sbjct: 172 VDVATVAHILVATEDEAKQVIERLDKGEDFADLAKELSQDPGSAENGGVYENIQRGQFVP 231

Query: 324 SLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
               ++F   + G+ T   +   FG+ +  + +   +  +        I  ++    A E
Sbjct: 232 EFDKAMFEDLQPGETTKTPVQTQFGWHVIRLVSRGEAPALDPANAPAVIEQRV----AQE 287

Query: 383 KVKEDYKRLEEFL 395
              E    LE  L
Sbjct: 288 LPFEQQSALERLL 300



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 46/162 (28%), Gaps = 5/162 (3%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
            +GS TV  V    +          +    + Q+ G          + ++++++   +  
Sbjct: 20  GAGSQTVARVDNVTLTRQELDQRIDRIEKGLQQQAGTGF--PLPSRLDIEQELVSQFIDQ 77

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARS-PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
                     G+      V  +I R                   +L   G +  E+    
Sbjct: 78  QLTLGLARQRGITVSDADVNEQIERFRQQIQTGSGISLEQAIQEQLGLPGESSPEFRLFV 137

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
           T  L+R  +    V  +     + D+        R VD   +
Sbjct: 138 TYFLARQKLGETLVSEVDIRQRISDEVMA--DTQRMVDVATV 177


>gi|329120541|ref|ZP_08249205.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327461280|gb|EGF07612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 290

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 93/237 (39%), Gaps = 18/237 (7%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV--LTQWFEKYK 221
           +    +G +    +++ +A+R   +        + N    A  + ++      Q +E Y+
Sbjct: 57  IRSELLGDIVTRTIVVQEARRLKLDQGKEYKAAIENARKAAQKEGADKKPGFKQQWEDYQ 116

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           +      +              +   +S+ E +  YE+ +  Y       + +++   + 
Sbjct: 117 NELLNQAFV---------AHIVRTQPVSDAEARKNYEEMQNFYKGSSEVQIGEILTQKKD 167

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS------IFSLAKK 335
           +A++A + LK  K F++ A +          G  +KEY P   L  +           KK
Sbjct: 168 DAEKAIKDLKANKPFVETARKYSADPQVKQTGGINKEYDPLKDLEAAAPPVYNAVKDLKK 227

Query: 336 GDF-TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G F T  + G+  Y + ++++ +     +F+++K +I   +   K ++ +    ++ 
Sbjct: 228 GQFTTTPVEGNGAYGVFYINDKRSVQIPAFEQIKANITRSLMQQKVNQAISSLTEKA 284


>gi|51246936|ref|YP_066820.1| hypothetical protein DP3084 [Desulfotalea psychrophila LSv54]
 gi|50877973|emb|CAG37813.1| hypothetical protein DP3084 [Desulfotalea psychrophila LSv54]
          Length = 333

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 100/358 (27%), Gaps = 72/358 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  + +  S       +    I++      + +        +  L++++    +
Sbjct: 37  DKVVAVVNNEVITLSELNAETAEIKHKITET--APADQQEEAMAEAREGALNSIIDKKLI 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++  +      V G IA                                      L
Sbjct: 95  AQKAKEARVFVSDEEVEGTIAGI-------------------------------QKRASL 123

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           SR   +          N   +  +    + + ++Y       + +      + + +++EK
Sbjct: 124 SREQFIEELKKSGLSFNTYQNNIRSQLLQRKVINY------DIRSKIVIPESQIREYYEK 177

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
               Y         Y+                 LQ  ++ +KE+  S E           
Sbjct: 178 ---EYTINAQDGEYYL-----------------LQIGFDWDKEEAGSKEK---------T 208

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS-IFSLAKKGDF 338
            + A        KG+ F  LAE+     S    G      I D+S   +   S  K G+ 
Sbjct: 209 LQFAKRIHAIAVKGQDFGALAEKYSTLPSAKDRGDIGFFAIDDMSENMARAISPLKPGEV 268

Query: 339 TPVIHGSFGYVIAHV---SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           + +I    GY    V             +  VK+ I  ++   +  +      K L+E
Sbjct: 269 SNIIESPAGYQFFKVLSGDQNNSISKAPYATVKEVIQAKLFEIQMQKDFSSWVKELKE 326


>gi|227889497|ref|ZP_04007302.1| peptidylprolyl isomerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849975|gb|EEJ60061.1| peptidylprolyl isomerase [Lactobacillus johnsonii ATCC 33200]
          Length = 298

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 17/228 (7%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
           G +  S       +    ++     IV +        D +   + + + KYK  Y +   
Sbjct: 36  GKITESQYYDKMKESQAGQSTLASMIVSDALESQYGKDVTQKQVDKEYNKYKKQYGSQFD 95

Query: 230 KRISYILFDVHEKEKKIE---ISNDELQA------EYEKNKEKYFSPEIRTVEQLVFPNQ 280
             +          +  ++   ++   L+         EK   K + PEI TV+ ++   +
Sbjct: 96  SVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQEKKAWKSYQPEI-TVQHILVSKK 154

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF-SKEYIPDVSLADSIFSLAKK 335
             A++  + L+ G  F +LA++             L +F S +   D S   + F L   
Sbjct: 155 STAEDVIKQLQDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTG 214

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              T  +   +GY +  +  IK     +F+E KK I NQ+  + + ++
Sbjct: 215 EITTTPVKTQYGYHVIKM--IKHPAKGTFKEHKKQIDNQIYQSMSEDQ 260



 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 23/174 (13%)

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV------SSKANQLVLEYSKEGKNFRDI 520
            IK+  PA+++          K WK+ +    V           + V++  ++G +F+ +
Sbjct: 124 HIKKITPAQEK----------KAWKSYQPEITVQHILVSKKSTAEDVIKQLQDGGDFKKL 173

Query: 521 GKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
            K       T N    +   D+ +        +  F      +   P++    Y V K+ 
Sbjct: 174 AKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGEITTTPVKTQYGYHVIKMI 233

Query: 578 NSKVGPV--QEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627
                    + K +  + + Q M++D  ++ SVIA +  +  V++ D  ++  L
Sbjct: 234 KHPAKGTFKEHKKQIDNQIYQSMSEDQNVMRSVIATVLKRADVSIKDKDLKNVL 287


>gi|168702269|ref|ZP_02734546.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gemmata
           obscuriglobus UQM 2246]
          Length = 420

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/362 (10%), Positives = 100/362 (27%), Gaps = 79/362 (21%)

Query: 43  VVSVGRQK-VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
           V  VG    +     +    Q+   ++   G   ++++        ++L   +    +  
Sbjct: 114 VARVGENNVITDQEVVEGVYQQFRELAALDGHARSAKQKEMYN---QVLRKTIERELILD 170

Query: 102 F-------IEDIGL--EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
                      + +  E           +  +F       S + F + L  +G+      
Sbjct: 171 EMYTKLKKANKMAIIDEVKELATQSIDRQLRMFRKDTGAKSEEEFAAILRTQGLTVP--- 227

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
                 + R  +   F+     S++L ++++R                          A 
Sbjct: 228 ------VIRRQMERQFMAEQYVSSVLKEKSRRTGL-----------------------AE 258

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
           +  +++++ D +R P+     ++   V                                 
Sbjct: 259 VRAYYDQHPDEFRRPDRVVWQHLFIAVRNYPNAQA------------------------- 293

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ--GKSLSDISLGSFSKEYIPDVSLADSIF 330
                    +A    Q    G    +L+ +   G +     LG+  K      +  ++  
Sbjct: 294 ------AYNQAAALAQQANSGADLAELSMKYDEGFAKQQKGLGAGEKRNEIQPADLEATV 347

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-KKDIANQMRITKASEKVKEDYK 389
              + G  + ++    GY +  V     +    F    +  I +++   +   + ++   
Sbjct: 348 WSLQPGQVSGILQTPTGYHLVKVVERDMAGVQPFDAALQSKIRDKLTRAQMESEYQKLVD 407

Query: 390 RL 391
            L
Sbjct: 408 EL 409


>gi|254302830|ref|ZP_04970188.1| peptidylprolyl isomerase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323022|gb|EDK88272.1| peptidylprolyl isomerase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 563

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 73/483 (15%), Positives = 163/483 (33%), Gaps = 66/483 (13%)

Query: 58  NSWKQELGMISQKIGFVVN-SERARSVGLDKKILDNLVSGATLDQFIEDI---GLEADHG 113
           +   ++   +   +G         +  GL K  L N +    L Q   +     +     
Sbjct: 106 SEVNKQYEELESSMGDKEQFRRMLQVRGLTKDSLKNQIEENLLIQKTREEFSKNINPTDE 165

Query: 114 RVWG--EIARSPLFHGKD------NKFSHDVFVSRL--AREGINEKEYIDHYTKMLSRT- 162
            +     +   P    ++      ++   + F   L  AR+ +  K+    Y  +L +T 
Sbjct: 166 EINTYMALYSIPADKKEEAINLYKSEKGAEAFREALLKARKEMQIKDLAPEYENLLEKTA 225

Query: 163 -----------DVVGMFVGGMRPSNLLLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPS 209
                      D+       M    +  + A++   E  +R +    +  +      + +
Sbjct: 226 YEEEGFTITNLDLARSIANVMLGQKISKEDAEKQAKEMISRQIKMAKI-AKEKGVKVNEN 284

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
              ++Q+ +               Y +    +   ++++++DEL   + +NK KY  P  
Sbjct: 285 LDAISQFQD---------------YYIGLAEKVRDEVKLTDDELLKFFNENKSKYSIPAT 329

Query: 270 RTVEQLVF------PNQKEADEAFQSLKK---GKKFIQLAEEQG--KSLSDISLGSFSKE 318
              + +         +   A E  + L      + F +  +  G  + +    LG+F  +
Sbjct: 330 ADAKLIFISVKSAKEDDDLAKEKAEKLLSELTPENFTEKGKSLGNNQDIIYQDLGTFGTK 389

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
            +      +++  +        VI   FGY +A+V     +      EV+  +       
Sbjct: 390 AMVK-EFEEALKDVPSNTIINKVIKTKFGYHVAYVKKNDNNQQW---EVEHILIVPYPSE 445

Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
           K   +  E   +++  +  GT    ++  +KI    +   D  G    G  +    Y  +
Sbjct: 446 KTVTEKLEKLNKIKADIEAGT----LALNDKIDEDVIQSFDAKGITPDGI-IPDFVYSPE 500

Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
           +   VF  +  L+K   +     + +  Q  + + A D   ++    VK D+   K AE 
Sbjct: 501 IAKAVFSTE--LNKVGIINPNKATIVIFQKTKEVKAEDANFDKSKEQVKSDYINKKVAEY 558

Query: 499 VSS 501
           +S 
Sbjct: 559 MSK 561


>gi|148655481|ref|YP_001275686.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus sp.
           RS-1]
 gi|148567591|gb|ABQ89736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus sp.
           RS-1]
          Length = 337

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 11/176 (6%)

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEA 283
           +PE++          +  + + +S ++++     E   +     ++ TV  ++   + EA
Sbjct: 130 SPEFRLFVTYFLARQKLGETL-VSENDIRQRITDEVMADTQRMVDVATVAHILVATEDEA 188

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF---SKEYIPDVSLADSIFSLAKKGDFTP 340
            +  + L KG+ F  LA+E  +     + G      +          ++F   + G+ T 
Sbjct: 189 KQVIERLDKGEAFADLAKELSQDPGSANNGGVYENIQRGQFVPEFDKAMFEDLQPGETTK 248

Query: 341 -VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
             +   FG+ +  + +   +  +   + +  I  ++    A E   E     E  L
Sbjct: 249 TPVQTQFGWHVIRLVSRGQAPALDPADAQAVIEQRV----AQELPFEQQTAFERLL 300


>gi|160902059|ref|YP_001567640.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Petrotoga mobilis
           SJ95]
 gi|160359703|gb|ABX31317.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Petrotoga mobilis
           SJ95]
          Length = 667

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 88/233 (37%), Gaps = 35/233 (15%)

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPS-------NAVLTQW-FEK----YKDNYRAP 227
           +Q     F+ + V Y    +  +P+  + +       +  +TQ+ F++        Y   
Sbjct: 105 NQVVDLLFDEKIVRYYAEQSDLLPSNEEVNNQINTQVDQYITQYKFDETNWNNMLQYYGS 164

Query: 228 EY-----------KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQL 275
           E            + +   L +   K+    +S ++  A  E+N E   +  E   V+ +
Sbjct: 165 EQNIRNILISGLQQTVETDLINNAVKDAVASVSREDALAYIEQNFESIKNDYEEVRVQHI 224

Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIF 330
           +  ++  A+   + +  G+  F   A     +   + +   +G   K    + S  D++F
Sbjct: 225 LLSDEATANSIKEMIATGEITFEDAASLYSLDTSNATNSGEIGWI-KHGNYEQSFEDAVF 283

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNI----KPSFTVSFQEVKKDIANQMRITK 379
           +  + G+    +  S G+ +  V +     KP     + +V  ++ + ++  K
Sbjct: 284 N-GQVGEIIGPVQTSEGFHLIRVLDKKIFEKPEDIFLYVDVYAEVESTVQGQK 335


>gi|308445916|ref|XP_003087049.1| hypothetical protein CRE_13891 [Caenorhabditis remanei]
 gi|308264485|gb|EFP08438.1| hypothetical protein CRE_13891 [Caenorhabditis remanei]
          Length = 438

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/401 (12%), Positives = 120/401 (29%), Gaps = 59/401 (14%)

Query: 33  ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92
           ++++      +  VG   +  S       +    +  +       E      L +++L  
Sbjct: 24  SVYAAPQDQIIAIVGSTAILKSDLDQGVAEATHRLQAQ-----KKEIPPQNILQQQVLSQ 78

Query: 93  LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGINEKEY 151
           L++     + ++  GL+AD   +   + +      +  + S + F  +L        +  
Sbjct: 79  LITHDAQLEQVKKYGLKADEKSLNEAVLKVAQ---QSGENSLEAFQKKLDAVAPGTYELL 135

Query: 152 IDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFENRSV--DYIVL--------NNR 200
            +   + L    +     +  ++ ++L ++   +      +V     VL           
Sbjct: 136 RNRVAEDLLIQRLSQQQVMSRIKITDLDVENFLKSPEGQAAVGSQVHVLHMRISGEAPAS 195

Query: 201 HVPAIADPSNAVLTQWFE--KYKDNYRA------------------PEYKRISYILFDVH 240
            + +IA      L    +    +  +                    P          +  
Sbjct: 196 ELESIAKAVRTDLKDSNDVKSIEKKFSTAQVKVDGADMGFRPLSDIPTDLAARVTTLEPG 255

Query: 241 EKEKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQS 289
           +    I   +    L+   +K+ E+           ++            ++  D  +  
Sbjct: 256 QTTDLIPAKDGVHVLKLLEKKSNEQKALVPQFNTRHILIKTSEVVSPENAKQTIDSIYNR 315

Query: 290 LKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           LK G  F  LA     + G +    SLG  S   +      D +   +   + +      
Sbjct: 316 LKAGDDFATLASTYSNDPGSARDGGSLGWVSPGMMV--PEFDKLMQSSPVNEISKPFQTQ 373

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           FG+ I  V+  +     S  E +K +A Q+   +  E   +
Sbjct: 374 FGWHILQVTGTRQQDMTS--EYQKRMARQILGERQFESEYD 412


>gi|270290459|ref|ZP_06196684.1| foldase prsA [Pediococcus acidilactici 7_4]
 gi|304384659|ref|ZP_07367005.1| peptidyl-prolyl cis-trans isomerase [Pediococcus acidilactici DSM
           20284]
 gi|270281240|gb|EFA27073.1| foldase prsA [Pediococcus acidilactici 7_4]
 gi|304328853|gb|EFL96073.1| peptidyl-prolyl cis-trans isomerase [Pediococcus acidilactici DSM
           20284]
          Length = 300

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 26/175 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             +  V+ + +  YKD Y               A   K+I          +   +IS+ +
Sbjct: 71  KVTKKVVDKQYNAYKDQYGSSFKDILASNGMTEASLRKQIRSNALLKEAVKDNDKISSSD 130

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+ E++  + K       TV Q++   +  A++  + L  GK F +LA++     S  + 
Sbjct: 131 LKKEWKSYQPK------VTVAQILVSKKSTAEDVIKQLNDGKDFAKLAKKYSTDSSSKNK 184

Query: 313 GSFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           G     +       D    D+ F L +    T  +   +GY +  + + KP+   
Sbjct: 185 GGKIAPFDDTNTTLDSDFKDAAFKLDEGKYTTKPVKTQYGYQVIKMLD-KPAKGK 238



 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 53/192 (27%), Gaps = 39/192 (20%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K+ L    +            +  GS TV +    K+    + +S K             
Sbjct: 6   KVLLGFASIAMAFT------LAACGSKTVATTSGGKITQDEYYSSLKDTSN--------- 50

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
                       K++L  ++    L+   +  G +     V     +   +  +      
Sbjct: 51  -----------GKQVLQEMIVNKVLE---KQYGDKVTKKVVDK---QYNAYKDQYGS--- 90

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
             F   LA  G+ E           S   +        + S+  L +  + Y    +V  
Sbjct: 91  -SFKDILASNGMTEASLRKQIR---SNALLKEAVKDNDKISSSDLKKEWKSYQPKVTVAQ 146

Query: 195 IVLNNRHVPAIA 206
           I+++ +      
Sbjct: 147 ILVSKKSTAEDV 158


>gi|91794237|ref|YP_563888.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
 gi|121956465|sp|Q12K61|SURA_SHEDO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|91716239|gb|ABE56165.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
          Length = 434

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/332 (11%), Positives = 106/332 (31%), Gaps = 57/332 (17%)

Query: 82  SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
              L  ++++ L+      Q  E IGL+    ++   I        KD K +      +L
Sbjct: 65  EQALRTQVIERLILTRLQLQMAERIGLQIGDLQLDQTIESI----AKDQKLTVSQLQQQL 120

Query: 142 AREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN--RSVDYIVLN 198
             +G++  +Y +   + ++  ++        ++ S   +    +   E   + V++  + 
Sbjct: 121 ENDGLSFSQYREQLREEITLGEIQRIQVQRRIQVSPQEISGLVKLMQEQGLKEVEF-QIG 179

Query: 199 NRHVPAIADPSNAVLTQWFE---------KYKDNYRAPE----------------YKRIS 233
           +  +   ++PS+  L    +            +++R+                  Y  I+
Sbjct: 180 HILIDVPSEPSSEQLEASSKRANIVLKRLNEGEDFRSTAIASSSGPKALEGGIWDYMNIN 239

Query: 234 YILFDVHEKEKKIEISNDE----------LQAEYEKNKEKYFSPEIRTVEQLVFP----- 278
            +     E     ++ +            +    +    +    E      ++       
Sbjct: 240 EMPTLFAEVVNGAKVGDIIGPIKSGSGFHIIKVMDARGLQTKEVEEVKSRHILLKPSPIL 299

Query: 279 NQKEADEAF-----QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIF 330
           +++ A         Q L     F +LA +  +     + G       PD      A ++ 
Sbjct: 300 SEERAKAMLVNFQKQILSGEADFAELARQYSEDPGSAAKGGELGWSSPDVYVPEFAQTLN 359

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           SL K+ + +     + G+ +  + + + +   
Sbjct: 360 SL-KENEMSEPFRTTHGWHLTQLMDKRKTDAT 390



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 92/270 (34%), Gaps = 25/270 (9%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           S   +    +  +  + L L  A+R   +   +  +      +      + + L Q  E 
Sbjct: 64  SEQALRTQVIERLILTRLQLQMAERIGLQIGDLQ-LDQTIESIAKDQKLTVSQLQQQLEN 122

Query: 220 YK---DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
                  YR    + I+       + +++I++S  E+    +  +E+        +  ++
Sbjct: 123 DGLSFSQYREQLREEITLGEIQRIQVQRRIQVSPQEISGLVKLMQEQGLKEVEFQIGHIL 182

Query: 277 F------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-V 323
                         + K A+   + L +G+ F   A         +  G +    I +  
Sbjct: 183 IDVPSEPSSEQLEASSKRANIVLKRLNEGEDFRSTAIASSSGPKALEGGIWDYMNINEMP 242

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRIT 378
           +L   + + AK GD    I    G+ I  V + +   T   +EVK        +  +   
Sbjct: 243 TLFAEVVNGAKVGDIIGPIKSGSGFHIIKVMDARGLQTKEVEEVKSRHILLKPSPILSEE 302

Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRRE 408
           +A   +    K++   L+      E++R+ 
Sbjct: 303 RAKAMLVNFQKQI---LSGEADFAELARQY 329


>gi|297568757|ref|YP_003690101.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924672|gb|ADH85482.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 305

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 68/164 (41%), Gaps = 6/164 (3%)

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
            L    +   KIE++++ LQ    +N E++       V ++V    ++A E    L    
Sbjct: 111 SLLVEKKLSDKIELNDEVLQRYLHENAEEFTVKTAVQVSKIVVETPEKAREVQARLAASD 170

Query: 295 KFIQLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            F  +A++       + +   LG   ++ +P   LA   F++ ++G+ +  I  S G   
Sbjct: 171 DFAVVAQQFSRHEESAANGGDLGFVGRQALP-SDLAHHAFNVLRQGEISAPIVQSGGIYF 229

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
             VS+ +      F ++++ +  Q+         ++    L+E 
Sbjct: 230 LKVSDYR-GDLPEFDKIRQLLTQQVAPHLRQNAFEQYLAELKEE 272



 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 60/162 (37%), Gaps = 19/162 (11%)

Query: 481 EVLTDVKKDWKTVKTAE---EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
           E+  +V + +      E   + + + +++V+E  ++ +  +          +   Q +R 
Sbjct: 123 ELNDEVLQRYLHENAEEFTVKTAVQVSKIVVETPEKAREVQARLAASDDFAVVAQQFSRH 182

Query: 538 DNEN-----------KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
           +              +    D     F+   +     PI         KV++ + G + E
Sbjct: 183 EESAANGGDLGFVGRQALPSDLAHHAFNVLRQGEISAPIVQSGGIYFLKVSDYR-GDLPE 241

Query: 587 KDKFISYLTQMMN----KDLLDSVIAYLKSQYSVTVHDNLIQ 624
            DK    LTQ +     ++  +  +A LK +Y + ++   ++
Sbjct: 242 FDKIRQLLTQQVAPHLRQNAFEQYLAELKEEYQIEINQEALR 283


>gi|116620016|ref|YP_822172.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223178|gb|ABJ81887.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 313

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 83/200 (41%), Gaps = 33/200 (16%)

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKE------KKIEISNDELQAEYEKNKEKYFS 266
           LT+  E+ K +  +P  + I Y   +V            + +   E+   Y+ NK+KY  
Sbjct: 83  LTKMAEQAKLDQESPYKEAIDYGRMNVLATAQITATVNAMTVEPAEIVKSYDSNKQKYTQ 142

Query: 267 PEIRTV---------------EQLVFPNQKEA--DEAFQSLKKGKKFIQLAEEQGKSLSD 309
            +++ +               ++ +   + +A  ++   +LK G  F++L +E     + 
Sbjct: 143 VKVKAIYVAFSDDAAASTTKGKKPLTEAEAKAKVEKLKAALKGGADFVKLVKENSDDETS 202

Query: 310 ISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              G         + IPD +   ++F+L KKGD +  +    G+ +     +        
Sbjct: 203 REKGGDFATLRYTDNIPD-AFRAAVFAL-KKGDVSEPLKQPNGFYLLRAEEVT---VSPL 257

Query: 365 QEVKKDIANQMRITKASEKV 384
            EV+ DI NQ++  +A++ +
Sbjct: 258 SEVRDDIYNQLKNDRATQWL 277


>gi|288924571|ref|ZP_06418508.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella buccae D17]
 gi|288338358|gb|EFC76707.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella buccae D17]
          Length = 457

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 90/285 (31%), Gaps = 42/285 (14%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAK--RFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
           +++    +         P   + +Q    + +    ++D I ++   V          + 
Sbjct: 49  EVMRLQGLAEGITFSGDPDCSIPEQIAVQKLFLHQAAIDSIEVSESEVAQGI---EGQIN 105

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVH----------------EKEKKIEISNDELQAEYE 258
            W +      +  EY++ S                       +  + +++S  +++A + 
Sbjct: 106 SWIQMTGSREKLEEYRKQSITQMRQQMHDDYRNRLLIQKMRMKLVEDVKVSPAQVRAYFR 165

Query: 259 KNKEKY--FSPEIRTVEQLVFPNQKEADEA----------FQSLKKGKK-FIQLAEEQGK 305
                   F P    VE L    +   +E              + KG+  F  LA    +
Sbjct: 166 DMPADSLPFVPTEVEVEILTSQPKISQEEINRVKDELRNYTDRVNKGETTFSTLARLYSE 225

Query: 306 SLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                 +G    ++   + D + A+  F+L      + ++   FGY I  + + +     
Sbjct: 226 DPGTARMGGELDYTGRGMLDPAFANVAFNLTDPKKISKIVESEFGYHIIQLIDKRGDKIK 285

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISR 406
               V+  +   +  ++A +        + ++  A   S +  + 
Sbjct: 286 ----VRHILRKPVVSSEALDASIHRLDSIGDDIRAGKFSFEAAAS 326


>gi|225018196|ref|ZP_03707388.1| hypothetical protein CLOSTMETH_02133 [Clostridium methylpentosum
           DSM 5476]
 gi|224948993|gb|EEG30202.1| hypothetical protein CLOSTMETH_02133 [Clostridium methylpentosum
           DSM 5476]
          Length = 333

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
           E++       E   V  ++  ++  A EA + ++ G+ F  L  E  +       G    
Sbjct: 187 EQDITDTIHQEFIHVSHMLISDEATAQEALERVQAGEDFDSLVAEYSEDSGMGEEGYTFT 246

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                    D+ ++L ++G+ + ++  ++GY I  
Sbjct: 247 YGEMVQEFEDAAYAL-QEGETSGLVQSTYGYHIIK 280


>gi|326562023|gb|EGE12353.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           103P14B1]
 gi|326574518|gb|EGE24460.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           101P30B1]
 gi|326576358|gb|EGE26267.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           O35E]
          Length = 434

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/405 (14%), Positives = 122/405 (30%), Gaps = 74/405 (18%)

Query: 31  SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
             ++   S    V  V  + +  S    +  + +    QK G  V  ++A+++      L
Sbjct: 23  QASISGNSHDGIVAVVNDEIILKSELNQA-TELVATEIQKNGGNVTQDQAQTL-----AL 76

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI-NEK 149
           D L++       I   G+  +   +  ++ +     G +   S   F S+L  E   +  
Sbjct: 77  DELINEKLQLAIINRAGVIPNDEVIDQQLLQIAQSQGVN---SLSEFQSKLDAERAGSYA 133

Query: 150 EYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFENR--SVDYIVL--------- 197
               +  +  +   +        +R ++  +D         R   V Y +L         
Sbjct: 134 ALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRLLHIRVPYLDN 193

Query: 198 --------NNRHVPAIADPS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
                       V      S       +  +      Y  + +  +   I+         
Sbjct: 194 TASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLINATALPPAIA 253

Query: 243 EKK------------IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQK 281
            K             + ++  ++     K ++            ++            ++
Sbjct: 254 AKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSSDIAEQ 313

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           + +  +Q L++G  F  LA              SLG  ++  +        + + AK GD
Sbjct: 314 KINAIYQQLQQGADFGTLAATYSDDTGSASQHGSLGWVNEGDMV-PEFETMMKNTAK-GD 371

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           F+      FG+ I  V++IK          + DI  Q R   A E
Sbjct: 372 FSTPFRSQFGWHILKVNDIK----------QHDITEQYRRNAAHE 406


>gi|303239171|ref|ZP_07325700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
 gi|302593216|gb|EFL62935.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
          Length = 353

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 74/169 (43%), Gaps = 23/169 (13%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV--------------EQLVFPNQKEAD 284
              +  KIEI++ ++++E+EKNKE+Y    ++ V              E  V   +K AD
Sbjct: 175 ASSQPAKIEINDSDVKSEFEKNKEQYNKVTVKHVLVLTNDSTTNEPLPEDKVAEKKKLAD 234

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           +  +  + G+ F  L ++  +       G   +F K  +      D  F+ AK+GD   V
Sbjct: 235 DILKKAQAGEDFEALVKQYSEDPGSKDKGGEYTFPKGEMVK-EFEDWAFN-AKEGDM-GV 291

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +  ++G+ +      + +   SF   K  + + ++  +  +K+ E  K 
Sbjct: 292 VQTTYGFHVMKFIKREDA---SFDAEKDKLKSSLQNAQYQKKLDELKKA 337


>gi|300728336|ref|ZP_07061701.1| ppic-type ppiase domain protein [Prevotella bryantii B14]
 gi|299774401|gb|EFI71028.1| ppic-type ppiase domain protein [Prevotella bryantii B14]
          Length = 476

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 67/431 (15%), Positives = 140/431 (32%), Gaps = 50/431 (11%)

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI-RT 271
           +    + + D   + + +  SY    V            E    YE  +++  +      
Sbjct: 70  VKAAEDAHLDTLTSFQKEFESYRDQQVRPSFITEAEVEAEAHKIYESERQRIDNNGGMIR 129

Query: 272 VEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSF 315
              ++   ++ A            D  + +LKKG  F +LA+    ++G ++    L   
Sbjct: 130 PSHILLLLKQNAPAKAAEIVKNRIDSIYNALKKGANFQELAKKYSDDKGSAVQGGLLPWI 189

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            K         D  +S+ KKG+ +       GY I  +++       S+  +K +I   +
Sbjct: 190 VKGQTYK-EFEDVAYSM-KKGEMSKPFSSPAGYHIILMTD--KGKFFSYDSLKNNIYRFI 245

Query: 376 RITKASEKVKED-YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
                 E++ +     + + L  G + + +         +               +    
Sbjct: 246 EQRGIREQIIDRNLDSIVKTLPEGATRETVLDERASDMSEKDSNLKYLIQEYHDGLLLYE 305

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
              + ++    KD+   +++       SY W              +E             
Sbjct: 306 ISNRKIWEKAAKDEVGLENYFKR-HKKSYAW--------------DEPRFKGIAY----- 345

Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
               V   A+   ++ S +GK F++    L  +    + I R+  E   F   G + V  
Sbjct: 346 ---HVKDAADVSAVKKSVKGKPFQEWASILRKTFNNDSTI-RIRVEKGIF-KKGDNAVVD 400

Query: 555 GPVEMVKCFPIENGLSYVVFKV--TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
             V  V    I+    Y +  +     K GP   +D   S +      +L    I  L+ 
Sbjct: 401 KMVFHVDTAQIKQIKDYPIDAIFGKKLKKGPETYED-VKSKVISDYQDELEKVWIEALRK 459

Query: 613 QYSVTVHDNLI 623
           +Y V V+ +++
Sbjct: 460 KYPVEVYQDIL 470


>gi|284055341|pdb|2KGJ|A Chain A, Solution Structure Of Parvulin Domain Of Ppid From E.Coli
          Length = 102

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYI 320
             P+      +    + EA      L KG  F  LA+E+   +    +   +G      I
Sbjct: 1   TQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATI 60

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           PD         L +KG  + VI  S G++I  + +I+ +
Sbjct: 61  PD---ELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQAA 96


>gi|171463167|ref|YP_001797280.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192705|gb|ACB43666.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 270

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 68/162 (41%), Gaps = 7/162 (4%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPE---IRTVEQLVFPNQKEADEAFQSLKKG 293
            ++     K  I++ ++QAEY K               V  +    + +A  A   +KKG
Sbjct: 106 LEMSTYMSKNPITDADVQAEYNKEIASLSPQGMIVEYKVSDIAVATEADAQAALARIKKG 165

Query: 294 KKFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVI 350
           + F ++A+    + + +  G+    +       LA ++ +L+K G  +P  I    G+ +
Sbjct: 166 EAFDKVAKSVSLAPNKVQGGAVGWIQPGQVAPQLASTLTTLSK-GQVSPAPIQMQQGWYL 224

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             + + K S   SF++ K+ I   +   K  E + +  K  +
Sbjct: 225 IKLEDKKSSKLPSFEQAKQAIRTGLTQRKQFEFLGQIAKDAK 266


>gi|254671556|emb|CBA09191.1| PPIC-type PPIASE domain protein [Neisseria meningitidis alpha153]
          Length = 366

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 80/262 (30%), Gaps = 30/262 (11%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213
           ++++R  +                 ++        +  +   ++           S A +
Sbjct: 99  EVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEI 158

Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266
                K       +P  +R     I           +   +S  E+ A  E+  K+    
Sbjct: 159 DAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITL 218

Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309
           PE         + ++     E             +   + G  F  LA +  +  S    
Sbjct: 219 PEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNG 278

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T   + ++ 
Sbjct: 279 GDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRN 335

Query: 370 DIANQMRITKASEKVKEDYKRL 391
            +   +   KA +      + L
Sbjct: 336 SVRQYIFQQKAEQATVNLLRDL 357


>gi|121634150|ref|YP_974395.1| putative rotamase [Neisseria meningitidis FAM18]
 gi|120865856|emb|CAM09589.1| putative rotamase [Neisseria meningitidis FAM18]
          Length = 405

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 80/262 (30%), Gaps = 30/262 (11%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213
           ++++R  +                 ++        +  +   ++           S A +
Sbjct: 138 EVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEI 197

Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266
                K       +P  +R     I           +   +S  E+ A  E+  K+    
Sbjct: 198 DAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITL 257

Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309
           PE         + ++     E             +   + G  F  LA +  +  S    
Sbjct: 258 PEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNG 317

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T   + ++ 
Sbjct: 318 GDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRN 374

Query: 370 DIANQMRITKASEKVKEDYKRL 391
            +   +   KA +      + L
Sbjct: 375 SVRQYIFQQKAEQATVNLLRDL 396


>gi|128297|sp|P23119|NIFM_AZOCH RecName: Full=Protein nifM
 gi|142394|gb|AAA22166.1| nifM [Azotobacter chroococcum]
          Length = 293

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 100/269 (37%), Gaps = 46/269 (17%)

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE------ 228
           S   L QA+R     + ++  VL       +  P+ + + + + +  + Y + E      
Sbjct: 31  SEEQLQQAERIIGRQKHIEDAVLRCPDAAGVVIPA-SQIEEAWTQIANRYESAEALQQAL 89

Query: 229 ---------YKRISYILFDVHEKEKKI-----EISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                     + +      V      I     EIS+ ++   Y  + E++  P       
Sbjct: 90  DAQGLERVGMRAMLARELKVQAVLDCICAGLPEISDTDVSLYYFNHAEQFKVPARHKARH 149

Query: 275 LVF--------PNQKEA----DEAFQSLK-KGKKFIQLAEEQG---KSLSDISLGSFSKE 318
           ++           ++ A    +   + L+ K ++F + A +      ++    LG     
Sbjct: 150 ILVTINEDFPENTREAARTRIEAILKRLRGKPERFAEQAAKHSECPTAMQGGLLGEVVPG 209

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN--QMR 376
            +    L   +F +A+ G  +PV+    G+ +    ++  +  ++ +E+   + +  Q+R
Sbjct: 210 TLY-PELDACLFQMAQ-GQLSPVLESPIGFHVLFCESVSTARQLTLEEILPRLRDRLQLR 267

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEIS 405
             KA ++     K LE  L    +++ ++
Sbjct: 268 QRKAYQR-----KWLESLLQQNATLENLA 291


>gi|293393860|ref|ZP_06638167.1| peptidyl-prolyl cis-trans isomerase C [Serratia odorifera DSM 4582]
 gi|291423687|gb|EFE96909.1| peptidyl-prolyl cis-trans isomerase C [Serratia odorifera DSM 4582]
          Length = 93

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  N+K A+E    LK+G  F  LA +     S     SLG F+K  +   +   ++F
Sbjct: 9   HILVDNEKLANELLAKLKRGVSFDTLARKYSTCPSKRNGGSLGEFNKGTMV-AAFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L K       +   FGY I  V
Sbjct: 68  SIPLLKP---YGPVKTQFGYHIIKV 89


>gi|290508670|ref|ZP_06548041.1| nitrogen fixation protein NifM [Klebsiella sp. 1_1_55]
 gi|289778064|gb|EFD86061.1| nitrogen fixation protein NifM [Klebsiella sp. 1_1_55]
          Length = 266

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 72/220 (32%), Gaps = 21/220 (9%)

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV-LTQWFEKYKDNYRAPEYKR 231
                  + A +   +   +    +    +PA      A  L  W ++    +   E   
Sbjct: 26  AVDRQAFEAAWQRQAQMEQLIVAQIAPEAIPAALLEGLATSLGAWLDE--GGFTPAERAA 83

Query: 232 ISYILFDVHEKEKKIE-----ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           I      +      I           +QA Y +++ ++  PE R    L+     +    
Sbjct: 84  IVLHHARLETAFAGIASQAPRPDPATVQAWYLRHQAQFMRPEQRLTRHLLLTVDGDDQAV 143

Query: 287 FQSL--------KKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
           +  +           + F  LA+       +L    LG   +  +    L +++F+LA+ 
Sbjct: 144 YSRIRELHGQIEASREAFAPLAQRHSHCPSALDGGRLGWIGRGLLY-PQLEEALFALAEN 202

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              +  +    G+ +     I+P+  ++ ++  +   + +
Sbjct: 203 -ALSAPVASELGWHLVWCEAIRPAAPMTPEQALESARDYL 241


>gi|46579881|ref|YP_010689.1| peptidyl-prolyl cis-trans isomerase C [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602653|ref|YP_967053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris DP4]
 gi|46449297|gb|AAS95948.1| peptidyl-prolyl cis-trans isomerase C [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562882|gb|ABM28626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris DP4]
 gi|311234118|gb|ADP86972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris RCH1]
          Length = 94

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++ P ++  +E    ++ G+ F ++A    +  S      LG F +  +      +
Sbjct: 5   RARHILVPTEEACNELKTRIEGGEDFAEVARASSRCPSGKRGGDLGEFPRGAMV-PEFDE 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           ++F+  + G     I   FGY +  V++ 
Sbjct: 64  AVFT-GEVGKVLGPIRTQFGYHLVEVTSR 91


>gi|325852084|ref|ZP_08171167.1| hypothetical protein HMPREF9303_2299 [Prevotella denticola CRIS
           18C-A]
 gi|325484640|gb|EGC87556.1| hypothetical protein HMPREF9303_2299 [Prevotella denticola CRIS
           18C-A]
          Length = 715

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 79/636 (12%), Positives = 195/636 (30%), Gaps = 73/636 (11%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG-----SSTVVSVGRQKVPFSSF 56
           L  IR  S+  +    + +    FL     +   S +G        +  +  +K+    +
Sbjct: 4   LGKIR--SKGGMLVAAIGLALFAFL---AEEGFRSCNGIKGEARQQIGEILGEKISVQDY 58

Query: 57  INSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
                +    I        +  E      +  ++   LVS   L    E +GL      +
Sbjct: 59  QKLIDEYQSAIKFTMQRDNLTEEELNQ--VKDQVWQQLVSNRVLQADAEKVGLTVTEQEI 116

Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
                      +A++P  + +  +F  +     L   G N+ +                 
Sbjct: 117 QNVLNDGTNLMLAQTPFVNQQTGRFDVNALKQFLD--GYNKAKSEKS-----------PQ 163

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
                   +  L   K    +     Y  L    V +           + +  +++    
Sbjct: 164 LDQMQTVYDYWLFIEKNLRTQLLGQKYQALLASCVLSNKA---EAKMAFKDNNEES---- 216

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVE----QLVFPNQ-- 280
              +++ + +   +    I+I++++L+A+Y++ K  +    E R ++    Q+       
Sbjct: 217 -QIQLASLAYSSVKDAD-IKITDEDLKAKYDELKPAFRQNVETRDIKFVDYQIKASTADR 274

Query: 281 ----KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
               KE +   + L        +  + G  +  + +   SK Y     +A  I SLA   
Sbjct: 275 NAVVKEMNGLQKQLATAADPATVVSKSGSEIPYLGVPVSSKAYRQYPDIASRIDSLAVGT 334

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
                        I  V +   +                      ++ +     +++ LA
Sbjct: 335 TGVTENKQDNTLNIIRVLS--KAQLPD----SVQFRQIQVAANTPDEARAKADSIQKALA 388

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
            G   + +++R       +       +           Y   LL         ++    +
Sbjct: 389 GGADFEALAKRYGQTGEKVWFTGQQYEAAPSMSQDNRTYINALLS------GEVNATQNI 442

Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
           AL  G+ + +Q+ +      +    V+  +    K   T  E  ++ ++ V + +    +
Sbjct: 443 ALAQGN-VILQVLDKKAMTTKTTAAVIKKLIDFSKA--TRNEAYNRFSEFVAK-NTTTTD 498

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFF--GYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
                   G  + + N I+  ++         D +  +F      V          +++ 
Sbjct: 499 LEKNASKYGYRVQSLNDISTAEHYVAGIHGTRDALKWLFEAKQGDVSQLYECGDNDHLLV 558

Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
            V N+ + P   +    + + +++ ++++    A L
Sbjct: 559 IVLNA-IHPQGFRAWDDAQVKEILKREVMKDKKAEL 593



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 60/379 (15%), Positives = 121/379 (31%), Gaps = 48/379 (12%)

Query: 262 EKYFSPEIRTVEQLVFPN------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
            K   P+     Q+          + +AD   ++L  G  F  LA+  G++        F
Sbjct: 353 SKAQLPDSVQFRQIQVAANTPDEARAKADSIQKALAGGADFEALAKRYGQT---GEKVWF 409

Query: 316 SKEYIPDVSLADSIFSLAKK----------GDFTPVIHGSF--GYVIAHVSNIKPSFTVS 363
           + +        ++  S+++           G+     + +   G VI  V + K   T +
Sbjct: 410 TGQQY------EAAPSMSQDNRTYINALLSGEVNATQNIALAQGNVILQVLDKKAMTTKT 463

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
              V   I   +  +KA+    E Y R  EF+A  T+  ++ +        +  ++    
Sbjct: 464 TAAV---IKKLIDFSKATR--NEAYNRFSEFVAKNTTTTDLEKNASKYGYRVQSLNDIST 518

Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
                 VA I      L  +F               +   + + +    P   R  ++  
Sbjct: 519 AEHY--VAGIHGTRDALKWLFEAKQGDVSQLYECGDNDHLLVIVLNAIHPQGFRAWDD-- 574

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----N 539
             VK+  K     E +  K  +L++   K G +     +  GA +   NQI         
Sbjct: 575 AQVKEILKR----EVMKDKKAELLIAKLK-GVSSIAAAQAKGAKVSMVNQITFASPAFVQ 629

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS--KVGPVQEKDKFISYLTQM 597
                       V +         P++      VF+V     + G    +   +    Q 
Sbjct: 630 ATGAVEPALSGAVAATAAGKFSKAPVKGNAGVYVFQVVKKAMRAGSKYNELMVMQQTAQQ 689

Query: 598 MNKDLLDSVIAYLKSQYSV 616
             + ++ + +  L  + +V
Sbjct: 690 NMQ-MVGNFMQDLILKANV 707


>gi|304410420|ref|ZP_07392038.1| SurA domain protein [Shewanella baltica OS183]
 gi|307304512|ref|ZP_07584262.1| SurA domain protein [Shewanella baltica BA175]
 gi|304350904|gb|EFM15304.1| SurA domain protein [Shewanella baltica OS183]
 gi|306911914|gb|EFN42338.1| SurA domain protein [Shewanella baltica BA175]
          Length = 434

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 115/371 (30%), Gaps = 71/371 (19%)

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
           N        L  ++++ L+      Q  + IGL     ++   I           K S  
Sbjct: 59  NQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KMSVA 114

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
               ++  EG++  +Y     + L     +G              + +R   + R     
Sbjct: 115 QMQQKIESEGLSFSQY----REQLREEITLG--------------EIQRIQVQRR----- 151

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
                        S   +T   +  ++        +I +IL DV       +        
Sbjct: 152 ----------IQVSPQEITSLVKLIQEQGMKDVEYKIGHILIDVPNNPTSEQ-------- 193

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
                               +  + K A+   + LK G+ F + A         +  G +
Sbjct: 194 --------------------LESSSKRANIVLERLKSGEDFRRTAIASSSGPKALEGGIW 233

Query: 316 SKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IAN 373
               I +  +L   + + AK GD    I    G+ I  + + +   T   +EV+   I  
Sbjct: 234 DYMNINEMPTLFAEVINGAKTGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILL 293

Query: 374 QMRITKASEKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
           +     + ++ K   ++ L++  +     ++++R+    S D       G+    +    
Sbjct: 294 KPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQY---SEDPGSATKGGELGWAEPSIY 350

Query: 433 IPYKEQLLFRV 443
           +P   Q L  +
Sbjct: 351 VPEFAQTLNSL 361



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 14/109 (12%)

Query: 268 EIRTVEQLVFP-----NQKEADEAFQS----LKKGK-KFIQLAEEQGKSLSDISLGS--- 314
           E      ++       ++  A    +     ++ G+ KF  LA +  +     + G    
Sbjct: 284 EEVRARHILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSATKGGELG 343

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           +++  I     A ++ SL K    +     + G+ I  +   + +    
Sbjct: 344 WAEPSIYVPEFAQTLNSL-KTDQISEPFRTTHGWHITQLEERRKTDATD 391


>gi|258649127|ref|ZP_05736596.1| peptidyl-prolyl cis-trans isomerase [Prevotella tannerae ATCC
           51259]
 gi|260850781|gb|EEX70650.1| peptidyl-prolyl cis-trans isomerase [Prevotella tannerae ATCC
           51259]
          Length = 739

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/509 (12%), Positives = 137/509 (26%), Gaps = 86/509 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59
           L+ IR  S+  +  I + +    F+   G       + +    V     + +    F N 
Sbjct: 4   LQKIR--SKGKILMIIIGLGLFAFIAESGFQSITGLTNADKQKVGEAFGETLTIQDFQNR 61

Query: 60  WKQELG---MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            +Q      M  Q+ G            + +++  + V+ + +    +  G++     V 
Sbjct: 62  VEQLSNIAKMQKQRAGQSDALTDQEQDQIREQVWSDFVNTSAIKHETDKAGIQVTDEDVQ 121

Query: 117 GEI-----------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID------------ 153
             +           A+    + +  +F  +     L     N  +               
Sbjct: 122 DALRTGQAQSLQMMAQMGFANQQTGRFDVNALQDFLKNYDKNMAQLAQSGQQAYMEQYQM 181

Query: 154 ----------HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
                          L +     M       + +              V+   +    V 
Sbjct: 182 LRQIWEYTEGQLRNELLKMKFYTMLGQTFISNPISAKMDFDARNTLADVEVAAVPYTMVS 241

Query: 204 AI-ADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
                 ++  L   +E+YK+ +  P +   +  +   V    K       +L        
Sbjct: 242 DKDVKVTDEDLKAAYEQYKEQFVNPTKSVDLKVLDVTVEASAK----DKADLT------- 290

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
                              KE +E  Q L+ G     +           +L      +  
Sbjct: 291 -------------------KEVNEVRQKLEAGGDPAAVVNASKTIFPYTTLAMSKNAFSS 331

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
              +A ++ S+   G   PV + +    I  +  I          V+  +   +   K  
Sbjct: 332 TPDIAAALDSMG-VGSVKPVYYNAQDNTINTLKLINKLQAA--DSVRYRMIAAV--GKTP 386

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
           ++ +     + + L  G   D++++R           D         E   +P  +  + 
Sbjct: 387 QESQTRADSILKALQGGAKFDDLAKRYN------QPTDSIWMFSAQYEAPNVPDDQAKMI 440

Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
                   L   ++V       + VQI E
Sbjct: 441 NQINT---LQPGYSVISNAQGSIVVQILE 466


>gi|87310456|ref|ZP_01092586.1| hypothetical protein DSM3645_30196 [Blastopirellula marina DSM
           3645]
 gi|87286955|gb|EAQ78859.1| hypothetical protein DSM3645_30196 [Blastopirellula marina DSM
           3645]
          Length = 838

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 76/575 (13%), Positives = 152/575 (26%), Gaps = 94/575 (16%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-----SVSGSSTVVSVGRQKVPFSSF 56
               RK  +  +A +F V+L + F + G+    F       +    VV +  Q +     
Sbjct: 8   FHFFRKNQKALLA-VFGVLLMIVFTVGGVVSQFFPQRAAYEAADKVVVKIDGQPLTKPEI 66

Query: 57  INSWKQ---------ELGMISQKIGFVVNSERARSVGLDKK----------------ILD 91
               +               +Q+ G   N       GL  +                   
Sbjct: 67  DRLSQDATLVSLVTGMAMARTQEAGGFPNPPAPPIAGLRYQPPSGPNSPGGAMREEISTQ 126

Query: 92  NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-----GI 146
            ++S        E +G+      V   +             S   +   L +       +
Sbjct: 127 VVISDHLFSLEGERLGVAISDDMVREFMTSV-----TGGVISDVQYAELLNQAQGADGRV 181

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR--SVDYIVLNNRHVPA 204
              +  + + + L       + + G+  +         +   NR   V    +N     A
Sbjct: 182 TYDQMFEMFRRTLLVQKTKRLLLEGIS-TATPASAWINYRNLNRTLDVQLYPVNTADYLA 240

Query: 205 IA--DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK------------EKKIEISN 250
                P+ A L + F +Y+D  R P      ++  D                 +  +I++
Sbjct: 241 KVTKKPTEAELKKLFNQYRDQIRNPLTGEPGFLQLDKAAVGFVKADYEKFLEAELAKITD 300

Query: 251 DELQAEYEKNKE-KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-------KFIQLAEE 302
           +++ A+YEKNK+  Y  P      +             +     +           ++ E
Sbjct: 301 EQVAADYEKNKDSSYRKPVADPAAETPLGVPATEPAMEEQPAATEPMTTEPMTTEPMSTE 360

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
             K+       +  K       + +       +                  +  KP+   
Sbjct: 361 PMKTEPAAEKPAEDKPAAEPAKMEEPAKEAPAEEK----TMTETPPATEKSAEEKPAPEA 416

Query: 363 SFQE----VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
             +E     K        + + SE +   ++   E  A     +E    EK      P  
Sbjct: 417 PAEEKPADEKPAAEESSLLGRGSEVMLVAFQEEGEKPAEDKPSEEKPATEKPADDAAPAA 476

Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
           +     +K       P +E  +     +  P  +                    P   R 
Sbjct: 477 E----PMKETPAETKPMEE--MSAPMDETKPTDESPMEEA--------------PVEYRP 516

Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
           LEEV   +K           V     ++     +E
Sbjct: 517 LEEVKDQIKASLARPLAQAAVKDALQKVSDVLQRE 551



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 100/310 (32%), Gaps = 54/310 (17%)

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL-----------------AL 397
              P      +EVK  I   +    A   VK+  +++ + L                   
Sbjct: 508 EEAPVEYRPLEEVKDQIKASLARPLAQAAVKDALQKVSDVLQREYDDYFYADEQNGNPFD 567

Query: 398 GTSMDEISRREKIVSIDLPLVDF-AGKDVKGKEVAAIPYK------------EQLLFRVF 444
              + ++++   +   ++P++D+ A  +    E+    +              + +  +F
Sbjct: 568 DLDLKKLAQEHGVEYGEMPMMDYIAAMESPYGEITHAEFSYNPQQGGLQRNDRRFVDFIF 627

Query: 445 GKDDPL---------SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
           G   PL         S     ++P          +         ++V   V + WK  + 
Sbjct: 628 GNKSPLYRPQEFPGASSSSMFSMPADQQFVFWKTDESKGFLPTFDQVRDQVVEAWKLQQA 687

Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN----QINRMDNENKFFGYDGIS- 550
           A+   ++  + +   ++      ++     A L+  N    Q  R   +       G+  
Sbjct: 688 AKLAEAE-AEKIAASAQGDAPLNEVVPVKDAVLVADNITYYQEIRQPGQYNPAQIPGVEK 746

Query: 551 -------QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603
                  ++F+ PV      P  +   + V +VT  +    + +D+  + +       + 
Sbjct: 747 TGLKTLDKIFATPVGATVVAPNADETVWYVARVTGERKTEAELRDQLKAEMNGDFPFSV- 805

Query: 604 DSVIAYLKSQ 613
            + +  ++SQ
Sbjct: 806 -AYLEGMRSQ 814


>gi|326560318|gb|EGE10706.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           7169]
 gi|326566363|gb|EGE16513.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           BC1]
          Length = 434

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/405 (14%), Positives = 122/405 (30%), Gaps = 74/405 (18%)

Query: 31  SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
             ++   S    V  V  + +  S    +  + +    QK G  V  ++A+++      L
Sbjct: 23  QASISGNSHDGIVAVVNDEIILKSELNQA-TELVATEIQKNGGNVTQDQAQTL-----AL 76

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI-NEK 149
           D L++       I   G+  +   +  ++ +     G +   S   F S+L  E   +  
Sbjct: 77  DELINEKLQLAIINRAGVVPNDEVIDQQLLQIAQSQGVN---SLSEFQSKLDAERAGSYV 133

Query: 150 EYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFENR--SVDYIVL--------- 197
               +  +  +   +        +R ++  +D         R   V Y +L         
Sbjct: 134 ALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRLLHIRVPYLDN 193

Query: 198 --------NNRHVPAIADPS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
                       V      S       +  +      Y  + +  +   I+         
Sbjct: 194 TASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLINATALPPAIA 253

Query: 243 EKK------------IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQK 281
            K             + ++  ++     K ++            ++            ++
Sbjct: 254 AKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSSDIAEQ 313

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           + +  +Q L++G  F  LA              SLG  ++  +        + + AK GD
Sbjct: 314 KINAIYQQLQQGADFGTLAATYSDDTGSASQHGSLGWVNEGDMV-PEFETMMKNTAK-GD 371

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           F+      FG+ I  V++IK          + DI  Q R   A E
Sbjct: 372 FSTPFRSQFGWHILKVNDIK----------QHDITEQYRRNAAHE 406


>gi|293603514|ref|ZP_06685936.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
 gi|292818100|gb|EFF77159.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
          Length = 335

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/318 (11%), Positives = 82/318 (25%), Gaps = 45/318 (14%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V +  +      ++  +    +  + G  V  ++     L  ++L  L+     
Sbjct: 61  DGIAAVVDKDVITLRELRDASVRISSELKSR-GIQVPDDQ----TLQHQVLQRLIMERVQ 115

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               + +G+  D  +V   I          NK S     + + + G     Y     + +
Sbjct: 116 RHEADRLGIRVDDAQVDQAIQTIAA----RNKISVAQLRAEIEKSGAGWDAYRKSLREEI 171

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
               +        +  S+  +D       + R+  +                    +   
Sbjct: 172 RTDRLRQRAVDSNIVISDTEVDAF--LKDQRRNPAFGAAPQAQPEPQPQAQPQPAPE--- 226

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                                   +  + +                 SPE       +  
Sbjct: 227 ----------QAAAPSGPMLYALAQILVRVPEG-------------SSPEQ------LAA 257

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGD 337
            +K+A++     K+G  F  LA         +  G    +       L     S  +KG 
Sbjct: 258 LRKKAEDVLARAKRGDDFASLAAASSDGPEALQGGVMGVRPLDGWPDLFVKAISNLQKGQ 317

Query: 338 FTPVIHGSFGYVIAHVSN 355
            + +I    G+ I  V +
Sbjct: 318 VSGLIQSGNGFHIIKVMD 335


>gi|238755780|ref|ZP_04617112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia ruckeri
           ATCC 29473]
 gi|238706007|gb|EEP98392.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia ruckeri
           ATCC 29473]
          Length = 93

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++K+A++    L  G  F +LA++     S      LG F+K  +   +   ++F
Sbjct: 9   HILVDDEKQANDILAQLNNGANFQELAKKHSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L +       +   FGY I  V
Sbjct: 68  SCELLQP---YGPVKTQFGYHIIKV 89


>gi|262375382|ref|ZP_06068615.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
 gi|262309636|gb|EEY90766.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
          Length = 440

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/397 (12%), Positives = 112/397 (28%), Gaps = 65/397 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S       +    + ++   V          L+++ L+ L+     
Sbjct: 38  DEVVAVVDNSIILRSDLAQGVAEISHQLQKQKKAVPP-----QQYLEQQALEQLIIRQAQ 92

Query: 100 DQFIEDIGLEADHGRVWGEIA---------RSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
            + ++   +  D   +   +              F  K +  + + + S   R  I E  
Sbjct: 93  LEQVKRYNIRPDEKALNEAVLKVARDSGSPSLEAFQQKLDAMAPNTYASL--RNRIAEDL 150

Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
            ++   + +  + +          + L   Q +        V ++ ++  +   IA    
Sbjct: 151 ALNRLRQQIVTSRI--QITDQDVKNFLNTPQGQALLGSQVHVLHLRVSGENAEQIATQVK 208

Query: 211 AVLTQW--FEKYKDNYRA------------------PEYKRISYILFDVHEKEKKIEISN 250
             L      +     Y                    P             +  + I +++
Sbjct: 209 QELNSSNDIQAIGKKYSTGGVKVEAADMGVRNLSEIPAELAARVTTLQPGQTSELIPVAD 268

Query: 251 --DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKKFIQL 299
               L+    K  E+           ++            ++  D  +  LK+G+ F  L
Sbjct: 269 GVHVLKLLERKGGEQKALVPQYLTRHILIQPSEVVSPENAKQMIDSLYNRLKQGEDFTVL 328

Query: 300 AE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A     + G +    SLG  S   +        + S    G F+      FG+ I  VS 
Sbjct: 329 ASTFSNDTGSARDGGSLGWVSPGVMV-PEFEQQMKS-TPVGQFSKPFQSQFGWHILQVSE 386

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            +          ++D+  + +   A + + E     E
Sbjct: 387 TR----------QQDMTQEYQERMARQLLSERQFDAE 413


>gi|114564239|ref|YP_751753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
 gi|121956468|sp|Q07YK0|SURA_SHEFN RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|114335532|gb|ABI72914.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
          Length = 434

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/400 (11%), Positives = 122/400 (30%), Gaps = 67/400 (16%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           KI   +L +      ++  +         V +    +  S   N                
Sbjct: 6   KIIFALLALAMSNTSMAAPM---PLDRVSVQINDGIILESEITNMVSTVKANAKA-ANQT 61

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           + S+ A    L  ++++ L+      Q  E IGL+    ++   I        K+ K + 
Sbjct: 62  LPSDDA----LRTQVIERLILTHLQMQMAERIGLQIGDLQLDQTIENI----AKEQKVTV 113

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN--RS 191
                 +  EG +  +Y +   + ++  ++        ++ S   +    +   E   + 
Sbjct: 114 AQMQQTIESEGTSFSQYREQLRQEVTLGEIQRIQVQRRIQVSPQEISGLVKLIQEQGLKD 173

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFE---------KYKDNYRAPEYKRIS--------- 233
           V++  + +  +   ++P++  L                 D++R+      S         
Sbjct: 174 VEF-QIGHILIEVPSNPTSEQLEGASRRAEIVLKRLNNGDDFRSTAIASSSGPKALEGGI 232

Query: 234 --YILFDVHEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQLV 276
             ++  +         ISN +               +    +    +    E      ++
Sbjct: 233 WDFMNINEMPTLFAEVISNAKKGDIIGPIKSGSGFHIIKVVDTRGLQTQEVEEVKSRHIL 292

Query: 277 FP-----NQKEADEAFQ----SLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIPD 322
                  ++  A          ++ G   F +LA    E+ G +     LG  +   +  
Sbjct: 293 LKPSPILSEDRAKAMLANFLAQVRAGDADFAKLATQYSEDPGSAAKGGELGW-ADPSMYV 351

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                ++ SL ++G ++     + G+ +  + + + +   
Sbjct: 352 PEFTQTLASL-QEGQYSEPFRTTHGWHVVQLESRRKTDAT 390



 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 28/301 (9%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK-- 221
           +    +  +  ++L +  A+R   +   +  +     ++      + A + Q  E     
Sbjct: 68  LRTQVIERLILTHLQMQMAERIGLQIGDLQ-LDQTIENIAKEQKVTVAQMQQTIESEGTS 126

Query: 222 -DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
              YR    + ++       + +++I++S  E+    +  +E+        +  ++    
Sbjct: 127 FSQYREQLRQEVTLGEIQRIQVQRRIQVSPQEISGLVKLIQEQGLKDVEFQIGHILIEVP 186

Query: 281 ------------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLAD 327
                       + A+   + L  G  F   A         +  G +    I +  +L  
Sbjct: 187 SNPTSEQLEGASRRAEIVLKRLNNGDDFRSTAIASSSGPKALEGGIWDFMNINEMPTLFA 246

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRITKASE 382
            + S AKKGD    I    G+ I  V + +   T   +EVK        +  +   +A  
Sbjct: 247 EVISNAKKGDIIGPIKSGSGFHIIKVVDTRGLQTQEVEEVKSRHILLKPSPILSEDRAKA 306

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
            +      L +  A      +++ +    S D       G+         +P   Q L  
Sbjct: 307 MLANF---LAQVRAGDADFAKLATQY---SEDPGSAAKGGELGWADPSMYVPEFTQTLAS 360

Query: 443 V 443
           +
Sbjct: 361 L 361


>gi|315644371|ref|ZP_07897511.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
           V453]
 gi|315280248|gb|EFU43540.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
           V453]
          Length = 361

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 102/283 (36%), Gaps = 39/283 (13%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I EKE+      +   +     F+        L  Q   + +      Y   +++   A 
Sbjct: 52  ITEKEFDLEQRMIQFMSPEYAQFLQMDEFKEYLAKQGVAYEYL-----YAKADDKAKEAA 106

Query: 206 ADPSNAVLTQWFEKY---KDNYRA-------PEYKRISYILFDVHEKE-KKIEISNDELQ 254
              ++ +L Q  +K    +D ++A        E    +Y+L  +   E +K ++S ++++
Sbjct: 107 EKQADDLLKQ--QKNGMGEDQFKAALETQKLTEQDLKNYMLRVLTVMEHEKNQVSEEDIK 164

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKE-------------ADEAFQSLKKGKKFIQLAE 301
            +++ NK+ Y +    +V  ++   +               A E    L KG+ F  +A+
Sbjct: 165 KDFDANKKDYTN---ISVRHVLVSFKDAEGKDRPEGEALKIAKEVENKLNKGEDFAAVAK 221

Query: 302 EQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           E  +  +    G   +            +   +L +    +  +   +GY +  V   + 
Sbjct: 222 EYSQDPASKDKGGLIENKPAGSWVPQFKEKALTL-ELNKISAPVETDYGYHVMKVEKREE 280

Query: 359 SFTVSF-QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
                   + K+ I N++   K    ++ +   L E + L  S
Sbjct: 281 VAYDKLPADQKEGILNELASAKIDNFMQNELNDLIESMDLPKS 323


>gi|254509382|ref|ZP_05121467.1| chaperone SurA [Vibrio parahaemolyticus 16]
 gi|219547690|gb|EED24730.1| chaperone SurA [Vibrio parahaemolyticus 16]
          Length = 431

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 83/337 (24%)

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
               L +++ + L+      Q  E IG+  D  R+   I        K+N  + +     
Sbjct: 64  EQEVLRQQVTEKLIIDTLQQQEAERIGVRIDDNRLNQAIEEI----AKNNNQTIEQLSDS 119

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           +A EG+   E+ +   K ++ T+     V                    R ++ +     
Sbjct: 120 IAAEGLEYSEFREQVRKEIAATEARNALV-------------------RRRINILPAEVD 160

Query: 201 HVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
           ++  I A  +NA +                 +IS+I   V++ +    +           
Sbjct: 161 NLANILAQETNATVQ---------------YKISHIQLRVNDGDDASALEKQ-------- 197

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFS 316
                                  A +    LK+G  F  +A       K+L     G   
Sbjct: 198 -----------------------AKDIVAKLKEGADFATMAYTYSKGPKALQGGDWGWMR 234

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IAN 373
           KE +P    AD+I +L  KG          G+ I  + ++K   TV+  EV      I  
Sbjct: 235 KEEMP-TIFADNI-NLENKGSVIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIRP 292

Query: 374 Q--MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
              +      +++ E  +R++   A   +  E++R+ 
Sbjct: 293 TVILSDEGVQKELNEIIERIQ---AGEATFGELARQY 326


>gi|238784761|ref|ZP_04628764.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia bercovieri
           ATCC 43970]
 gi|238714357|gb|EEQ06366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia bercovieri
           ATCC 43970]
          Length = 93

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++K+A++    L  G  F +LA++     S      LG F+K  +   +   ++F
Sbjct: 9   HILVDDEKQANDILAQLNNGADFQELAKKFSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L +       +   FGY I  V
Sbjct: 68  SCELLQP---YGPVKTQFGYHIIKV 89


>gi|167849967|ref|ZP_02475475.1| putative rotamase [Burkholderia pseudomallei B7210]
          Length = 156

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 6/154 (3%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                + +  D++ A Y + K K  + E   +  L  P + +A      L +G  F +LA
Sbjct: 2   TFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGELA 60

Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                  S      +G  ++  + DV+  + I ++ K G F+  I GS GY + +V + +
Sbjct: 61  MRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDKR 118

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                S  ++++ +    R+ K    + E    +
Sbjct: 119 DIVAPSLDQIREQLIELARVDKFERHLCELRGAV 152


>gi|288934468|ref|YP_003438527.1| nitrogen fixation protein NifM [Klebsiella variicola At-22]
 gi|255761121|gb|ACU32721.1| nitrogen fixation protein NifM [Klebsiella variicola At-22]
          Length = 266

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 72/220 (32%), Gaps = 21/220 (9%)

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV-LTQWFEKYKDNYRAPEYKR 231
                  + A +   +   +    +    +PA      A  L  W ++    +   E   
Sbjct: 26  AVDRQAFETAWQRQAQMEQLIVAQIAPEAIPAALREGLATSLGAWLDE--GGFTPAERAA 83

Query: 232 ISYILFDVHEKEKKIE-----ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           I      +      I           +QA Y +++ ++  PE R    L+     +    
Sbjct: 84  IVLHHARLETAFAGIASQAPRPDPAAVQAWYLRHQAQFMRPEQRLTRHLLLTVDGDDQTV 143

Query: 287 FQSL--------KKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
           +  +           + F  LA+       +L    LG   +  +    L +++F+LA+ 
Sbjct: 144 YSRIRELHGQIEASREAFAPLAQRHSHCPSALDGGLLGWIGRGLLY-PQLEEALFALAEN 202

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              +  +    G+ +     I+P+  ++ ++  +   + +
Sbjct: 203 -ALSAPVASELGWHLIWCEAIRPAAPMTPEQALESARDYL 241


>gi|58583369|ref|YP_202385.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188575375|ref|YP_001912304.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|75508083|sp|Q5GWC1|SURA_XANOR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|58427963|gb|AAW77000.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188519827|gb|ACD57772.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 463

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/431 (10%), Positives = 112/431 (25%), Gaps = 70/431 (16%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +   +L +   I  L+ A  S         V    V  S    + +      + +   + 
Sbjct: 8   VLASLLAITSTISPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLP 67

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
             +      L +++L+ L+         +  G+      +   IA       + N  + D
Sbjct: 68  PDDV-----LQRQVLERLILVKLQVGRADGSGIRVSDEELNRAIASI----AQQNGTTVD 118

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
               +LA +G+   ++       +     +       R S    +       +  +    
Sbjct: 119 GLRQKLAADGMGYADFRASVRDEIIV-QRLRQSFAQSRISVSEGEVDTALTQQAATGSKY 177

Query: 196 VLNNRHVPAIADPSNAVL----------TQWFEKYKDNYRAPEYK-----------RISY 234
            L +  +      +   +              +K + ++ A   +            + +
Sbjct: 178 HLAHILIGLPEGATAEQIATGQKKVDGVKALIDKGELDFPAAAVRYSDSPNALEGGDLGW 237

Query: 235 ILFDVHEKEKKIEISND---------------------ELQAEYEKNKEKYFSPEIRTVE 273
              D         I +                      E++      ++K  +       
Sbjct: 238 RSLDEIPNAFAQLIRDMKPGQVAGPLRGPSGFQLLKLMEMRDANAGGEKKMVT--EYNAR 295

Query: 274 QLVF---------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320
            ++            + + D     +  G  F   A+E  +  +       LG F  +  
Sbjct: 296 HILVRVGDNQTEAQAKAKIDTIRARIVGGADFQATAKESSEDTNSRGQGGDLGWFPADAF 355

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                   +  LA  G  +       G+ I      + +   S +  +  +   +   K 
Sbjct: 356 -GPDFGKQVEGLA-DGAVSEPFRTQAGWHIVQRVGSRQTDV-SAENQRAQVRETIGRRKL 412

Query: 381 SEKVKEDYKRL 391
            E+     + L
Sbjct: 413 EEEYNRYLQEL 423


>gi|121611714|ref|YP_999521.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
 gi|121556354|gb|ABM60503.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
          Length = 482

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 136/478 (28%), Gaps = 92/478 (19%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + V  +   +   +    I+++   + + E      L  ++L+ L+      Q 
Sbjct: 78  VAVVNSEPVTNNEVRSRLVRAEAQIARQGASMPSRE-----WLAHEVLERLILERVQLQQ 132

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
             + G+  D   +            + N  + + F +RL R+GI ++ +       L   
Sbjct: 133 ARESGIRVDDFALAQAEQGV----ARQNGMTLEQFYARLERDGIGKERFRAELRDQLLEQ 188

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            +                         R VD          A    S   + Q+      
Sbjct: 189 RLRE-----------------------REVD----------ARVQVSEQDIDQY------ 209

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
                      +       + K +EI+   +     ++       E R            
Sbjct: 210 ----------LHAEPPAGAQAKPMEINLGHVLVLVPEDATPAQVAERR----------AR 249

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL--AKKGDFTP 340
           A +A + L+ G  F  +A E   +      G        D      + S      G    
Sbjct: 250 AQQAAERLRSGADFATVAREFSDAPEGQRAGGMLGLRPVDRYPELFVSSTRGLPVGSLVG 309

Query: 341 VIHGSFGYVIAHVSNIKPSFTVS--FQEVKKDIA----NQMRITKASEKVKEDYKRLEEF 394
            +    G+ +  V     +   +   Q   + I      +M  T A+E++ +  +R+   
Sbjct: 310 PVRSPAGFHLLKVEQRVIAGQPATVLQSHARHILLRTGPRMSETAAAERLADYRRRV--- 366

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           LA       ++R     S D       G          +P  EQ L  +        +  
Sbjct: 367 LAGQADFAALAREH---SQDDGSAKKGGDLGWANPGQYVPEFEQALQAL--------QPG 415

Query: 455 TVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
            ++ P  +   V + E +  R   L   E     ++  +  K  +   S    L    
Sbjct: 416 DISAPLVTRFGVHLIELLERRQASLTAREQRDMARQAVREKKLDQAYISWTQDLRARA 473


>gi|113969251|ref|YP_733044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
 gi|121956472|sp|Q0HLT0|SURA_SHESM RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|113883935|gb|ABI37987.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
          Length = 434

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 116/382 (30%), Gaps = 71/382 (18%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
              N        L  ++++ L+      Q  + IGL     ++   I           K 
Sbjct: 56  RAANQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KM 111

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN-- 189
           +      ++  EG++  +Y +   + ++  ++        ++ S   +    +   E   
Sbjct: 112 TVAQMQQKIESEGLSFGQYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGM 171

Query: 190 RSVDY------IVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRAPEYKRIS-------- 233
           + V+Y      I + N       + S+       E+ K  +++R       S        
Sbjct: 172 KDVEYQIGHILIDVPNNPNSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGG 231

Query: 234 ---YILFDVHEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQL 275
              Y+  +         I+  +               +    +    +    E      +
Sbjct: 232 IWDYMNINEMPTLFAEVINGAKKGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHI 291

Query: 276 VFP-----NQKEADEAFQS----LKKGK-KFIQLAEEQGKSLSDISLGS---FSKEYIPD 322
           +       ++  A    +     ++ G+ KF  LA +  +     + G    +++  I  
Sbjct: 292 LLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSAAKGGELGWAEPSIYV 351

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
              A ++ SL++    +     + G+ I  +   +          K D  +Q    +A +
Sbjct: 352 PEFAQTLNSLSQD-QISEPFRTTHGWHITQLEERR----------KTDATDQFNTNRAHQ 400

Query: 383 KV------KEDYKRLEEFLALG 398
            +      +E    L+E  A  
Sbjct: 401 LIFRRKFNEELQNWLDEMRADA 422


>gi|304389108|ref|ZP_07371152.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC
           13091]
 gi|304336981|gb|EFM03171.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC
           13091]
          Length = 348

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 133 IQASEAEIDAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 192

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 193 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 252

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 253 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 310

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 311 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 339


>gi|257455283|ref|ZP_05620518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter
           aerosaccus SK60]
 gi|257447245|gb|EEV22253.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter
           aerosaccus SK60]
          Length = 550

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/417 (11%), Positives = 121/417 (29%), Gaps = 73/417 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  V    +  S    +  Q    +  +   V  +++        ++LD L++    
Sbjct: 143 DGVIAIVNDTPILRSQLDRAVAQASAQLQAQNKPVPPAQQLY-----PQVLDQLITKQIQ 197

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG------INEKEYID 153
              I+  GL+A+   V   +        ++   S   F  +L  +       + +K   D
Sbjct: 198 LDLIKRQGLQAEENAVNAALTNLAQ---QNGVASLAEFQQKLDAQRAGGYQALRQKVSED 254

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAV 212
              + L +  +        +  +  L   +    E      + +    +   A   S+  
Sbjct: 255 LAIQTLQQQQLASRIKISDQDVDNFLKSPESNALEKSQYRTLHIRVPFIADAAGKTSDKQ 314

Query: 213 LTQWF-------------EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY-- 257
             Q                   +          +  +               EL      
Sbjct: 315 KKQALTVATQIAKNLQAENANIEQIMTDAQANYNAQIQGGDMGYHVAAELPTELSKNITA 374

Query: 258 ----------------------EKNKEKYFSPEIRTVEQLVFP---------NQKEADEA 286
                                 +K   +    +      ++            +++ D  
Sbjct: 375 LEVGQVTNPIATAEGYNVIKLVDKRGGQQKIIDQWHTRHILISPSTALPADMAKQQIDTI 434

Query: 287 FQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
           ++ L++G+ F  LA    ++ G + +   LG  S+  +      +S+       D++   
Sbjct: 435 YEKLRQGEDFATLASTYSKDPGSASNGGDLGWVSEGDMV--PSFESMMKQTSVNDYSVPF 492

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEV-KKDIANQMRITKASEKVKEDYKRLEEFLALG 398
              FG+ I  V   +        +V +K++A ++   + + +  +D+  +++  A  
Sbjct: 493 QTQFGWHILKVDEKR---QKDVSDVYRKNMAREILYQRMAPQALDDW--MQDLRAQA 544


>gi|319411235|emb|CBY91642.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria meningitidis
           WUE 2594]
          Length = 360

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 145 IQASEAEIDAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 204

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 205 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 264

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 265 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 322

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 323 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 351


>gi|94309382|ref|YP_582592.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
           metallidurans CH34]
 gi|121956449|sp|Q1LRA3|SURA_RALME RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|93353234|gb|ABF07323.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Cupriavidus
           metallidurans CH34]
          Length = 493

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/457 (12%), Positives = 123/457 (26%), Gaps = 83/457 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +     ++   +    +      V          L  ++L+ LV     
Sbjct: 82  DEVVAVVNNSVITRRELLDRADEIESQLRAAKREVPPR-----PDLLGEVLERLVMERVQ 136

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G++     V   I        + NK S     SR+   G++  +Y D   K  
Sbjct: 137 TQAAQEAGIKVTDQEVDRAIESV----AQQNKMSATELRSRVEASGMSWTKYRDELRKQ- 191

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                                           V  I L  R V +     +  +  +   
Sbjct: 192 --------------------------------VQVIRLREREVDSKVQVYDGEIDNYLAA 219

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                   +        F+V +   ++     + Q                         
Sbjct: 220 RNGG----QAAASGPTEFNVAQILVRVPEDASDAQKA---------------------QL 254

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           + +A+   + ++ G  F +LA+   ++       SLG      +P V  A+++  L    
Sbjct: 255 KTKAEGLLKQVQGGADFAELAKANSEAPEASQGGSLGFREIGRLPAV-FANAVVDLQPGA 313

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---VKKDIANQMRI---TKASEKVKEDYKR 390
               V+  + G+ +  + + + +           +  + + +          + K     
Sbjct: 314 VVPEVLESANGFHVVKLVSKRTAAAQPAASDRIAQTQVRHILIRTGPNMPEAEAKRQMAT 373

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
           + + +  G    + +RR              G    G+ V         L      D  +
Sbjct: 374 IRDRITHGVDFADAARRYSQDG-SASQGGELGWVSPGELVPEFEQAMNRLRPGEISDPVV 432

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKL--EEVLTD 485
           ++     +   +    +  E  P + R     EV   
Sbjct: 433 TQFGVHLIQVENR---RETEVSPEKQRDFARAEVREQ 466



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 48/144 (33%), Gaps = 12/144 (8%)

Query: 262 EKYFSPEIRTVEQLVFPNQKEADE------AFQSLKKGKKFIQLAE---EQGKSLSDISL 312
           ++    ++R +     PN  EA+           +  G  F   A    + G +     L
Sbjct: 344 DRIAQTQVRHILIRTGPNMPEAEAKRQMATIRDRITHGVDFADAARRYSQDGSASQGGEL 403

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           G  S   +       ++  L + G+ +  +   FG  +  V N + +     ++ +    
Sbjct: 404 GWVSPGELV-PEFEQAMNRL-RPGEISDPVVTQFGVHLIQVENRRETEVSP-EKQRDFAR 460

Query: 373 NQMRITKASEKVKEDYKRLEEFLA 396
            ++R  K      +  ++L     
Sbjct: 461 AEVREQKLRAAYDDWVRQLRSAAY 484


>gi|223934638|ref|ZP_03626558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
 gi|223896593|gb|EEF63034.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
          Length = 325

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 27/175 (15%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           Y R S +  D  +    +++     +  Y  +      P  +  EQ     +K+AD+   
Sbjct: 155 YIRQSIMTIDAKDYADWVKV-----RYIYIADAGYNSIPAKK--EQTSIETKKKADQILT 207

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---------VSLADSIFSLAKKGDFT 339
            ++ G  F +LA+E   S  ++  G     Y+            +   ++F L K+G+ +
Sbjct: 208 KIRNGTDFAKLADEFTDSPENVVDGKKQGGYMGWRARSWTQFTPAFEAAVFKL-KQGEVS 266

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKK---DIANQMRITKASEKVKEDYKRL 391
             I   FGY +A V            EVK    ++   +   K    +    + +
Sbjct: 267 EPIRSDFGYYLAKVEATG-------LEVKDKDPELKKLIADGKVRPLIDSTLENI 314


>gi|262372454|ref|ZP_06065733.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205]
 gi|262312479|gb|EEY93564.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205]
          Length = 442

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/417 (11%), Positives = 122/417 (29%), Gaps = 69/417 (16%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           A +   ++             F+      V  V    +  S       +    +  +   
Sbjct: 17  ATVLAALISSSM-------HSFAQPTDEVVAIVDNSVILKSDLEQGIAETEHQLKAQNKT 69

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
           V   +  +      ++LD L+      + ++  G++AD   +   + +      +    +
Sbjct: 70  VPPQQYLQM-----QVLDQLIIRQAQLEQVKRYGIKADEKSLNAAVLKVA---NQSGATT 121

Query: 134 HDVFVSRLAREGINEKEYID---HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAK 183
            + F  +L    I    Y +      + L+   +     +  ++ S+L ++      + +
Sbjct: 122 LEAFQQKLDA--IAPGTYENLRNRIAEDLAIGRLRQQQVMSRIKISDLDVENFLNSPEGQ 179

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------------Y 224
                   V ++ ++  +       +  V                              +
Sbjct: 180 AALGTQAHVIHMRISGDNAAEAQKVALEVKNALTNSDDPKAISSKLSTSSVKVDGADMGF 239

Query: 225 RA----PEYKRISYILFDVHEKEKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           R+    P           + +  + I + +    L+    K  ++    +      ++  
Sbjct: 240 RSLSEIPTELAARITPLKIGQTTELINVRDGIHVLKLLERKQNDQKALVDQYQTRHILIQ 299

Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSL 325
                     ++  D  +   K G+ F  LA     + G +    SLG  S   +     
Sbjct: 300 PSEVVSLDRAKQMIDSLYNRAKAGEDFATLAATYSNDTGSARDGGSLGWVSPGVMV-AEF 358

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             ++ +    G  +      FG+ I  V + +        EV++ +A Q+   +  +
Sbjct: 359 EQTMKN-TPVGQISKPFQTQFGWHILQVMDTRQQDMTK--EVQERMARQILGERQFD 412



 Score = 43.8 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 79/280 (28%), Gaps = 36/280 (12%)

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
            E +       +  +  +    +  +      L+Q KR+       D   LN   +    
Sbjct: 59  TEHQLKAQNKTVPPQQYLQMQVLDQLIIRQAQLEQVKRYGI---KADEKSLNAAVLKVAN 115

Query: 207 DPSNAVLTQWFEK-------YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
                 L  + +K         +N R    + ++       +   +I+IS+ +++     
Sbjct: 116 QSGATTLEAFQQKLDAIAPGTYENLRNRIAEDLAIGRLRQQQVMSRIKISDLDVENFLNS 175

Query: 260 NKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
            + +        V  +          QK A E   +L        ++ +   S   +   
Sbjct: 176 PEGQAALGTQAHVIHMRISGDNAAEAQKVALEVKNALTNSDDPKAISSKLSTSSVKVDGA 235

Query: 314 SFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN----------------- 355
                 + ++    +   +  K G  T +I+   G  +  +                   
Sbjct: 236 DMGFRSLSEIPTELAARITPLKIGQTTELINVRDGIHVLKLLERKQNDQKALVDQYQTRH 295

Query: 356 --IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             I+PS  VS    K+ I +     KA E           
Sbjct: 296 ILIQPSEVVSLDRAKQMIDSLYNRAKAGEDFATLAATYSN 335


>gi|167742962|ref|ZP_02415736.1| putative rotamase [Burkholderia pseudomallei 14]
          Length = 190

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +    + +  D++ A Y + K K  + E   +  L  P + +A      L +G  F +L
Sbjct: 35  DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 93

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A       S      +G  ++  + DV+  + I ++ K G F+  I GS GY + +V + 
Sbjct: 94  AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 151

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     S  ++++ +    R+ K    + E    +
Sbjct: 152 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 186


>gi|119944807|ref|YP_942487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
 gi|119863411|gb|ABM02888.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
          Length = 439

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/406 (12%), Positives = 123/406 (30%), Gaps = 65/406 (16%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V ++ +  S    +              + + ++     L K+ILD L++     Q  
Sbjct: 33  AVVNQEIILSSDLQRAQLDIQERYKNSDQTLPSGDK-----LTKQILDKLITDRLQLQIA 87

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
           + IGL  +  ++   + +      +    + +   ++L ++G N   ++D     L+  +
Sbjct: 88  QRIGLRINDAQLQQTVQQI----AQKEGLTSEQLQAKLEKQGKNYAAFVDTIRDELTINE 143

Query: 164 VVGM-FVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           +  +     +  S+  ++Q  KR   E +        +       + S A   Q  EK  
Sbjct: 144 IRQIEVRRRITISDQDVEQMVKRINAEGQKNTQFSFVHLLFKLDKESSAAE-QQRIEKKA 202

Query: 222 DNY---------------------RAPEY-----KRISYILFDVHEKEKKIEISNDELQA 255
            +                      +A E      + I+ +         + + +  ++  
Sbjct: 203 QDLVKKIKLGANASQLALLNSEGPKASEGGDWGWRTINEMPTLFAGIFNEQQTNKGDVIG 262

Query: 256 EY------------EKNKEKYFSPEIRTVEQLVFPN-----QKEADEAF-----QSLKKG 293
            +            +K   +           ++  +      ++A +         +   
Sbjct: 263 PFKSDLGLHIIKIMDKKGAQNVMTVEVNARHILIKSNIILSDQKAQKLLTGYRQDIINGK 322

Query: 294 KKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           K F  LA E  +       G    ++   +      +   SL   G+ +       G+ I
Sbjct: 323 KSFAALAREYSQDPGSAVKGGDLGWADPSMYVPEFKELALSLP-VGEISQPFRTMHGWHI 381

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
             V N + S T   Q  K+   + +   +   +V      + +   
Sbjct: 382 LEVINKRESDTTE-QATKQKAYSLLFQQRFPAEVYAWMNEIRQEAY 426


>gi|34540273|ref|NP_904752.1| hypothetical protein PG0452 [Porphyromonas gingivalis W83]
 gi|34396585|gb|AAQ65651.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
          Length = 715

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 75/651 (11%), Positives = 181/651 (27%), Gaps = 88/651 (13%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           LE IR  +   +  + + V    F+I     S + F       V+ +  +K+    +   
Sbjct: 4   LEKIRGKAGLLI--VVVGVALFAFIIGDFLRSGSTFFRQSQEVVLDINGEKIKIYDYQQR 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            K       Q  G  +  E+     L+ ++    V    L Q  + +GL      +   I
Sbjct: 62  LKAMEKRAEQS-GTKITDEQ--RASLNNQLAQQYVQDYVLGQQADKLGLTVSPEELLALI 118

Query: 120 ARS--------PLFHGKDNKF--SHDVFVSRLA-------------REGI-----NEKEY 151
                        F  +              L              ++G      +E + 
Sbjct: 119 IGDGVQPSMFAQQFFSRFGINGSDRAAVNDFLNHISDKQIKLQPAEQQGYLYEIQSEWQS 178

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSN 210
           ++         + +G  +      N  +D        +R V         +       ++
Sbjct: 179 VEKQIADTRMQEKLGALLTRSYAIN-DIDARYESGVPSREVAVAQAPISVIGDTSIRATD 237

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
             + +++ ++K+ +                                Y     +Y S ++ 
Sbjct: 238 EEIKKYYNEHKEFFVQK-----------------------------YPSTIVQYISSQVV 268

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
              Q +   + E  +    +++      LA          S  + ++    ++ ++ + F
Sbjct: 269 PSAQDMANAEVEMQKVRTEMQQQSDVEALARNYSDKFVSPSFLTSAELDRMNLGVSITEF 328

Query: 331 -SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
              A  G+    +  +  Y +  +   K      F+ +   I   + +  A+        
Sbjct: 329 IKTATPGEVNIPMLENNHYSLVKLVAKKSG----FESLNVAI---IALDSAN---LSKAD 378

Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
            L   L  G      +R                   +  ++      E +  ++      
Sbjct: 379 SLCNALNEGGDFAAAARTFSADPTSRETGGVLTFPNQFTQMPDSTITEAMAQQLHLDTLF 438

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
               + V   +        K   P     +++             + E  + K  +L  E
Sbjct: 439 SVPSNRVIKMNQDKFVFLAKAFNPK--PAVDKYKIAYI-GVDANFSDETYNKKFMELN-E 494

Query: 510 YSKEGKNFRDIGKNL---GASLLTTNQINRMDN--ENKFFGYDGISQVFSGPVEMVKCFP 564
               GK F  + +     G S+    ++    +   N     + +S       + V    
Sbjct: 495 MLNSGKPFPKLAEQARSKGLSIEENAEVTVFSDHVGNIPSSREIVSWALKAEEDEVNEKI 554

Query: 565 IENGLSYVVFKVTNSKVGP-VQEKDKFISYLTQMMNKD-LLDSVIAYLKSQ 613
              G  Y+V      ++    +  +K    +   +  +   + ++A LK++
Sbjct: 555 FRCGTDYLVIAAVKDQIPSGYRPVEKIKEQIANQLRVEKQGEKLVADLKAK 605



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 113/355 (31%), Gaps = 33/355 (9%)

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADS-------- 328
           +AD    +L +G  F   A       +    G           +PD ++ ++        
Sbjct: 376 KADSLCNALNEGGDFAAAARTFSADPTSRETGGVLTFPNQFTQMPDSTITEAMAQQLHLD 435

Query: 329 -IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKVKE 386
            +FS+        +    F + +A   N KP+        K  IA   +    + E   +
Sbjct: 436 TLFSVPSN-RVIKMNQDKFVF-LAKAFNPKPAVD------KYKIAYIGVDANFSDETYNK 487

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
            +  L E L  G    +++ + +   + +   + A   V    V  IP   +++      
Sbjct: 488 KFMELNEMLNSGKPFPKLAEQARSKGLSIE--ENAEVTVFSDHVGNIPSSREIVSWALKA 545

Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
           ++    +          +   +K+ IP+  R +E++   +    +  K  E++ +     
Sbjct: 546 EEDEVNEKIFRCGTDYLVIAAVKDQIPSGYRPVEKIKEQIANQLRVEKQGEKLVADLKAK 605

Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
            L+      N       +   + T   I+   +       +      S P+  +      
Sbjct: 606 KLD------NLEAYASAMNTKIDTLAGIS--YSPRGGEAAELAGYAMSTPLTKLSEPFAA 657

Query: 567 NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
                VV  +T ++    Q  +  I+   + + +         +  Q  VT +  
Sbjct: 658 RNYVMVVKPLTQNEKAAGQSVEAQIAQKRRALGQQTAYRAFRKMLDQVPVTDNRA 712


>gi|126641684|ref|YP_001084668.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii ATCC 17978]
 gi|126387568|gb|ABO12066.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii ATCC 17978]
          Length = 180

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 14/185 (7%)

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
           F    K+   +    + L +G  +WV++++   A  + L + + +VK      K  +   
Sbjct: 2   FNDDVKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEVKAKVIDEKARKAAQ 61

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV--- 557
           +K   ++ E+  +      +      +  +     R    ++          FS P    
Sbjct: 62  AKIATMLTEFKTQ--PAEQVVAKNKVAFESAGVFTR----SQGLKRAIERAAFSVPTPKP 115

Query: 558 --EMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
               V    + N L  V     NS      P  +  +      Q   + +L+    YLKS
Sbjct: 116 GMWSVTTANLPNELVVVAVSNVNSAAVNAMPADQLQQLKQLYRQSRGQQILEDYSEYLKS 175

Query: 613 QYSVT 617
              + 
Sbjct: 176 HAKIK 180


>gi|71909270|ref|YP_286857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
 gi|122070644|sp|Q479U4|SURA_DECAR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|71848891|gb|AAZ48387.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
          Length = 438

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/475 (13%), Positives = 136/475 (28%), Gaps = 94/475 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  VG   + +          L  + ++ G  +  +      L++++L+ L+     
Sbjct: 37  DRIVAVVGSDVITYFELRTRLTAALKQLQKQ-GTPLPPQDV----LERQMLERLIMERAQ 91

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q+  + G++ D  ++   I R                        +   ++     K  
Sbjct: 92  LQYGRETGMKIDDTQLDLAIGRIAA------------------GNKMTVPQFRAALEKDG 133

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIVLNNRHVPAIADPSNAVLTQWFE 218
                                Q  +F  E R  +  + L  R V +    S   +  +  
Sbjct: 134 V--------------------QYAQFREEIRNEMVTVRLREREVDSKLVISEGEIDNYL- 172

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             +    + E  ++++IL    E                        +PE       +  
Sbjct: 173 ANQTATGSEEEYQLAHILLRAPESA----------------------TPEQ------LQK 204

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335
            ++  ++A +  + G+ F QL      +        LG   +      +L     S  + 
Sbjct: 205 LRQRGEQALKRARAGENFAQLTAAFSDAPDALQGGDLGW--RPLARLPALYAEAGSRLQS 262

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT----KASEKVKEDYKRL 391
           G+ + ++  S G+ I  + + +         V++  A  + I      +  +     + +
Sbjct: 263 GEVSDLLRSSAGFHIVKLVSKRGGSAP--ASVQQTHARHILIRSSEVLSEAEATRKLEAV 320

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
            E +A G    E +R            +    +  G  V         L         ++
Sbjct: 321 RERIANGVDFAEQARLYSQDGSAAKGGELGWLNP-GDTVPEFERAMDALK--------IN 371

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
           +   V         +Q+ E    RD   E      ++  +  K  E       QL
Sbjct: 372 EVSQVVQSPFGMHLIQVLERR-ERDVSAERQRAVARQALRERKLDEAYQDWLRQL 425


>gi|294790992|ref|ZP_06756150.1| peptidylprolyl isomerase PrsA1 [Scardovia inopinata F0304]
 gi|294458889|gb|EFG27242.1| peptidylprolyl isomerase PrsA1 [Scardovia inopinata F0304]
          Length = 301

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 26/187 (13%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             ++  + + +EKYK  Y              +A   + I   L      +K  + S  +
Sbjct: 75  SVTDKQVDKAYEKYKKQYGSGFSAYLSQNNYTKASFKRGIRTNLLSEVALKKLKKPSQAQ 134

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+  ++            TV+ ++  ++  A      L  GK F  LA+      S    
Sbjct: 135 LKDAWKTYHP------QVTVQHILTQDEATARSVIAQLNAGKDFASLAKTYSLDTSSKDE 188

Query: 313 G----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
           G      S +   D +  D+ + L K       +  + GY +  +  +      SF+  K
Sbjct: 189 GGKISFLSTDRSYDSTFKDAAYKLQKGKYTKEPVKVTDGYEVIKM--VSNPGKGSFESRK 246

Query: 369 KDIANQM 375
           K++   +
Sbjct: 247 KELTETV 253


>gi|251772783|gb|EES53345.1| probable peptidyl-prolyl cis-trans isomerase [Leptospirillum
           ferrodiazotrophum]
          Length = 289

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 6/176 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
               + + K+++++ ++Q  ++K++++   P    V QL+ P+QK AD    SL+K K F
Sbjct: 116 LIKTQVDDKVKVTDADVQGYFDKHRQEIKQPGYVEVRQLIIPDQKTADRIVSSLRKKKGF 175

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +  E+         +G   +  +P    A   F +   G  T  I    G     +   
Sbjct: 176 SRAIEKF----KGGPVGKIFEGTVP-PQFAKFFFGVP-AGSVTGPIALKDGIHYFKIDKQ 229

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
            P   +SF + K  I   +      +  ++    L     +  +   +       S
Sbjct: 230 VPGKLLSFDQAKAGITQFLTSRMKQDLYQKYLNSLRAKTKIEINQKSLGELMGAAS 285



 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 74/260 (28%), Gaps = 46/260 (17%)

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
           D +  +     I    +  A KD+     A       +L R+        +     LP+ 
Sbjct: 38  DNVVAKVGTREITKESLQSAIKDMNLPSSAPASVPSDVLNRLIDNTLITEEAEQEGLPN- 96

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA-----------NQLVLEY 510
                      P   +KLE+    +    +      +V  K            ++   E 
Sbjct: 97  ----------RPDIRKKLEDARNRI---LRQALIKTQVDDKVKVTDADVQGYFDKHRQEI 143

Query: 511 SKEG--------KNFRDIGKNLGASLLTTNQINRMDNENKFFG---------YDGISQVF 553
            + G           +     + +SL      +R   + K                ++ F
Sbjct: 144 KQPGYVEVRQLIIPDQKTADRIVSSLRKKKGFSRAIEKFKGGPVGKIFEGTVPPQFAKFF 203

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ----MMNKDLLDSVIAY 609
            G        PI        FK+     G +   D+  + +TQ     M +DL    +  
Sbjct: 204 FGVPAGSVTGPIALKDGIHYFKIDKQVPGKLLSFDQAKAGITQFLTSRMKQDLYQKYLNS 263

Query: 610 LKSQYSVTVHDNLIQRYLDG 629
           L+++  + ++   +   +  
Sbjct: 264 LRAKTKIEINQKSLGELMGA 283


>gi|22124271|ref|NP_667694.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis KIM 10]
 gi|45442924|ref|NP_994463.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Microtus str. 91001]
 gi|170026250|ref|YP_001722755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           pseudotuberculosis YPIII]
 gi|186893515|ref|YP_001870627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           pseudotuberculosis PB1/+]
 gi|21957040|gb|AAM83945.1|AE013636_3 peptidyl-prolyl cis-trans isomerase C [Yersinia pestis KIM 10]
 gi|45437791|gb|AAS63340.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Microtus str. 91001]
 gi|169752784|gb|ACA70302.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           pseudotuberculosis YPIII]
 gi|186696541|gb|ACC87170.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 98

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++K+A++    L  G  F +LA++     S      LG F+K  +   +   ++F
Sbjct: 14  HILVDDEKQANDILAQLNNGANFQELAKKFSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 72

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L +       +   FGY I  V
Sbjct: 73  SCELLQP---YGPVKTQFGYHIIKV 94


>gi|227892857|ref|ZP_04010662.1| peptidylprolyl isomerase [Lactobacillus ultunensis DSM 16047]
 gi|227865359|gb|EEJ72780.1| peptidylprolyl isomerase [Lactobacillus ultunensis DSM 16047]
          Length = 308

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 78/239 (32%), Gaps = 28/239 (11%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +++              + L +       E +   Y              S+  + + + 
Sbjct: 48  ITQQQYYDEMKKSQAGKSTLANMIINRALEQQYGKY-------------VSSKKVDKQYN 94

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSP-----EIR 270
            YK  Y +     +          ++ ++   +S   L+   +  K +            
Sbjct: 95  NYKKQYGSQFSAVLQQNGMTASSFKENLKTNLLSEQALKHIKKVTKSQEEKAWKSYQPKV 154

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-----GSFSKEYIPDVSL 325
           TV+ ++   +  A+   + LK GK F  LA++     +  +         S +   D + 
Sbjct: 155 TVQHILVAKKSTAETIIKQLKDGKSFSSLAKKYSLDTATKNKAGKLPAFDSTDNTLDSAF 214

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             + F L      +  +    GY +  + N  P+    F + KK I +++  + A ++ 
Sbjct: 215 KTAAFKLTTGEVTSTPVKSQSGYHVIKMIN-HPAKGK-FADHKKAIDDEIYASMAQDQA 271



 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 70/233 (30%), Gaps = 40/233 (17%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           +   +STV S    K+    +                     +  +     K  L N++ 
Sbjct: 33  NSGSNSTVASYKGGKITQQQYY--------------------DEMKKSQAGKSTLANMII 72

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L+Q     G      +V     +   +  +        F + L + G+    + ++ 
Sbjct: 73  NRALEQQ---YGKYVSSKKVDK---QYNNYKKQYGS----QFSAVLQQNGMTASSFKENL 122

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
              L     +       + +    ++A + Y    +V +I++  +        +   + +
Sbjct: 123 KTNLLSEQALKHIK---KVTKSQEEKAWKSYQPKVTVQHILVAKKS-------TAETIIK 172

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
             +  K      +   +     +   K    + +++ L + ++    K  + E
Sbjct: 173 QLKDGKSFSSLAKKYSLDTATKNKAGKLPAFDSTDNTLDSAFKTAAFKLTTGE 225


>gi|21672423|ref|NP_660490.1| survival protein SurA precursor [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091307|sp|Q8KA01|SURA_BUCAP RecName: Full=Chaperone surA homolog; Flags: Precursor
 gi|21623033|gb|AAM67701.1| survival protein SurA precursor [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 432

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/405 (12%), Positives = 124/405 (30%), Gaps = 78/405 (19%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN---SWKQELGMISQK 70
            K++  ++   FL +        +     +  V  Q +  S       S K+E   +   
Sbjct: 1   MKVYFFLILYVFLSFFSITYSKELEIDKIIAIVNNQIILNSDVNQVLFSLKEEDQRVKIP 60

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
           +             L  KI+  L++   + +  +   +     +V   +++   +  K N
Sbjct: 61  LKINF---------LRNKIIKKLITETLILEEAKKFNIVVTDDQVNNVLSK---YALKKN 108

Query: 131 KFSHDVFVSRLARE---GINEKEYIDHYTKMLSRTDVVGMFVG-----GMRPSNLLLDQA 182
               ++  + L        +  +Y +     L    +    +        +  +L L++ 
Sbjct: 109 ITIEELKRNILMNNTNTSFSYNDYFNKIKNSLKVKIIQDYVLHNRVHISEKEVDLFLNKL 168

Query: 183 KRFYFENRSVDY------------------IVLNNRHVPAIADPSNAVLTQWFE---KYK 221
                E + +D                     +   H        +A    ++E   K  
Sbjct: 169 INTQNELKKIDINCIFLPFIKEKNKIFIKNTKILADHFAKKIK-KDASFNYYYEYFKKNN 227

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDEL-------QAEY--------EKNKEKYFS 266
           + + + E +  S          K   I  +++       +  Y         +NKE   +
Sbjct: 228 NIFLSKEIRSKSLKYLKKIFLNKLKIIKKNQILGPILGLKGFYILKINKIENENKENLTT 287

Query: 267 PEIRTVEQLVFP-----NQKEADE----AFQSLKKGK-KFIQLAEEQGKSL----SDISL 312
                ++  +       + K+A       + ++K  K  F    ++    +        L
Sbjct: 288 --EFHIQHCLIRPSVILDDKQAKNSIYYIYNNIKNKKYSFDYAVQKLSHDVYSSHKKGDL 345

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           G  S ++  +    + +  L K  + +  I  +FG+ I  + +I+
Sbjct: 346 GWISTDFFSN-DFRNFLTDLRKN-EISKPIKSNFGWHIIKLLDIR 388


>gi|238024223|ref|YP_002908455.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderia glumae BGR1]
 gi|237878888|gb|ACR31220.1| Putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderia glumae BGR1]
          Length = 319

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 81/230 (35%), Gaps = 13/230 (5%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
           V G+  +   L+QA+    +  +          +        A  +  ++ Y     A E
Sbjct: 78  VNGVAITRDQLEQARVAANQPDTASVRAALKNQLITRELLRQAAASAHYDTYPQVLAAVE 137

Query: 229 YKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
             + ++     + +  K   +++ E++A+Y++        E++    +V  ++  AD A 
Sbjct: 138 QAKSLAMTQAWLRDHIKPEPVTDAEVKAKYDEVVAGLGQTELKP-RVIVLKDRASADAAL 196

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLADSIFSLAKKG 336
             LK+G  F QLA +     +    G+              +      LA+++  L   G
Sbjct: 197 AQLKQGADFAQLARQAADGPNAAQGGALNWVSFRQPVPPGGQQGWPQPLAEALLKLPVGG 256

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
             +  +     + I  V   + +   ++ + K  +   +      +   E
Sbjct: 257 VTSAPVEADGRFWILRVDEKRATRIPAYADAKDVLRRGLEQAALQKATIE 306


>gi|254420790|ref|ZP_05034514.1| PPIC-type PPIASE domain protein [Brevundimonas sp. BAL3]
 gi|196186967|gb|EDX81943.1| PPIC-type PPIASE domain protein [Brevundimonas sp. BAL3]
          Length = 309

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 54/159 (33%), Gaps = 7/159 (4%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            IS+  +Q  Y +      + E   V  ++   + EA+     L +G  F  +A E+   
Sbjct: 118 AISDQAVQTLYNEQLRLAKTSEEIRVRLILSRTKPEAEAVIGILGQGASFEAVAMERSVD 177

Query: 307 ----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                S   LG  + + +P              G          G+ +  V + +     
Sbjct: 178 EATRFSGGDLGYSTLDVMPQAYAG--ALRDKPAGSTVGPFQTEGGWAVLRVEDRRKESPP 235

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTS 400
           + ++ +  I   +      + +++   + + + L  G +
Sbjct: 236 TLEQARPQIVRYLTYEGVRQLLEQLRGKAKVDVLLAGET 274



 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 47/144 (32%), Gaps = 8/144 (5%)

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
            ++R+     + K + + +   L  G S + ++    +         F+G D+    +  
Sbjct: 139 EEIRVRLILSRTKPEAEAVIGILGQGASFEAVAMERSVD----EATRFSGGDLGYSTLDV 194

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
           +P       R    D P          +G +  +++++        LE+    + +    
Sbjct: 195 MPQAYAGALR----DKPAGSTVGPFQTEGGWAVLRVEDRRKESPPTLEQARPQIVRYLTY 250

Query: 493 VKTAEEVSSKANQLVLEYSKEGKN 516
               + +     +  ++    G+ 
Sbjct: 251 EGVRQLLEQLRGKAKVDVLLAGET 274


>gi|300724849|ref|YP_003714174.1| peptidyl-prolyl cis/trans isomerase [Xenorhabdus nematophila ATCC
           19061]
 gi|297631391|emb|CBJ92088.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Xenorhabdus
           nematophila ATCC 19061]
          Length = 434

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/372 (12%), Positives = 115/372 (30%), Gaps = 63/372 (16%)

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  +  E+A    L  +IL+ L+    + Q    + +      +   IA         N 
Sbjct: 58  GQQIPDEKA----LRHQILERLIMDDIVLQMANRMQITIPDQTLDSAIAGIAA----QNH 109

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAK-RFYFEN 189
            S       L  +GI+   Y +   K ++ ++V        +      +D    +   +N
Sbjct: 110 LSLAQLKQNLVADGISFDTYRNQIRKEMTISEVRNNEVRRRITILPQEVDSLTNQLEGQN 169

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
                + +++  +P   +P+ A + +  E    N  +     + +    +        + 
Sbjct: 170 NQDTELNISHILIPLPENPNQAQVEK-AETTVRNILSELKNGVDFGKLAITYSGDTQALK 228

Query: 250 ----------------NDELQAEYEKNK---------------------EKYFSPEIRTV 272
                            ++LQ+ Y+                         +  +      
Sbjct: 229 GGNMGWNKLQELPSLFTEQLQSAYKGQIIGPIRSGVGFHILKVNDTRGGNRSVAVTEVNA 288

Query: 273 EQLVFPN-----QKEADEAFQSLKKG-----KKFIQLAEEQGKSLSDISLGSFSKEYIP- 321
             ++          +A      L++        F + A+E  +       G      +P 
Sbjct: 289 RHILLKTSPVMNDDQARSELMKLREEILSGKTTFEKAAKEYSEDPGSAMRGGELGWNLPS 348

Query: 322 --DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
             D +  D++  L +KG+ +  +H +FG+ +  + + +     +    K      +   K
Sbjct: 349 AYDPAFRDALTKL-QKGEISQPVHSAFGWHVIQLLDSRK-VDKTDAAQKDRAYRLLFNRK 406

Query: 380 ASEKVKEDYKRL 391
            +E+ +   + L
Sbjct: 407 FNEEAQSWMQEL 418



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/387 (14%), Positives = 117/387 (30%), Gaps = 56/387 (14%)

Query: 148 EKEYIDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           EK       + L   D+V        +   +  LD A         +    L    V   
Sbjct: 64  EKALRHQILERLIMDDIVLQMANRMQITIPDQTLDSAIAGIAAQNHLSLAQLKQNLVADG 123

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
                           D YR    K ++      +E  ++I I   E+ +   + + +  
Sbjct: 124 ISF-------------DTYRNQIRKEMTISEVRNNEVRRRITILPQEVDSLTNQLEGQNN 170

Query: 266 SPEIRTVEQLVFP-----NQKEADEA-------FQSLKKGKKFIQLAEEQGKS---LSDI 310
                 +  ++ P     NQ + ++A          LK G  F +LA         L   
Sbjct: 171 QDTELNISHILIPLPENPNQAQVEKAETTVRNILSELKNGVDFGKLAITYSGDTQALKGG 230

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
           ++G    + +P +         A KG     I    G+ I  V++ +     S    + +
Sbjct: 231 NMGWNKLQELPSLFTEQ--LQSAYKGQIIGPIRSGVGFHILKVNDTR-GGNRSVAVTEVN 287

Query: 371 IANQMRI-------TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
             + +          +A  ++ +  + +   L+  T+ ++ ++     S D       G+
Sbjct: 288 ARHILLKTSPVMNDDQARSELMKLREEI---LSGKTTFEKAAKEY---SEDPGSAMRGGE 341

Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEE 481
                  A  P     L ++   +        ++ P  S     + + + +R  D+    
Sbjct: 342 LGWNLPSAYDPAFRDALTKLQKGE--------ISQPVHSAFGWHVIQLLDSRKVDKTDAA 393

Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVL 508
                 +     K  EE  S   +L  
Sbjct: 394 QKDRAYRLLFNRKFNEEAQSWMQELRA 420


>gi|218768937|ref|YP_002343449.1| putative rotamase [Neisseria meningitidis Z2491]
 gi|121052945|emb|CAM09299.1| putative rotamase [Neisseria meningitidis Z2491]
          Length = 347

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%)

Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259
              S A +     K       +P  +R     I           +   +S  E+ A  E+
Sbjct: 132 IQASEAEIDAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 191

Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304
             K+    PE         + ++     E             +   + G  F  LA +  
Sbjct: 192 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 251

Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +  S      LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T
Sbjct: 252 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 309

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + ++  +   +   KA +      + L
Sbjct: 310 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 338


>gi|254720016|ref|ZP_05181827.1| Chaperone surA precursor [Brucella sp. 83/13]
 gi|265985025|ref|ZP_06097760.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13]
 gi|306838443|ref|ZP_07471287.1| Chaperone surA precursor [Brucella sp. NF 2653]
 gi|264663617|gb|EEZ33878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13]
 gi|306406482|gb|EFM62717.1| Chaperone surA precursor [Brucella sp. NF 2653]
          Length = 311

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 16/160 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E    + +   +  +      S DE Q  YE N+ ++ S  I     ++        EA 
Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQEAR 174

Query: 288 QS------------LKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332
            +            + +   F  +A E     S     +LG  ++          ++  +
Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                    I   FGY I  +        + F  V   IA
Sbjct: 234 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273


>gi|260568390|ref|ZP_05838859.1| LOW QUALITY PROTEIN: PpiC-type peptidyl-prolyl cis-trans isomerase
           [Brucella suis bv. 4 str. 40]
 gi|260155055|gb|EEW90136.1| LOW QUALITY PROTEIN: PpiC-type peptidyl-prolyl cis-trans isomerase
           [Brucella suis bv. 4 str. 40]
          Length = 193

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 42/141 (29%), Gaps = 16/141 (11%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------AFQSLKKGK 294
             S DE Q  YE N+ ++ S  I     ++        E            A   + +  
Sbjct: 16  SASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQTATRLAAAVIAEPA 75

Query: 295 KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F  +A E     S     +LG  ++          ++  +         I   FGY I 
Sbjct: 76  TFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERMTPGETTANPIESRFGYHIV 134

Query: 352 HVSNIKPSFTVSFQEVKKDIA 372
            +        + F  V   IA
Sbjct: 135 RLDRRVEGEELPFDYVVDKIA 155


>gi|325202891|gb|ADY98345.1| PPIC-type PPIASE domain protein [Neisseria meningitidis M01-240149]
 gi|325207310|gb|ADZ02762.1| surA/PPIASE domain protein [Neisseria meningitidis NZ-05/33]
          Length = 348

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 80/262 (30%), Gaps = 30/262 (11%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213
           ++++R  +                 ++        +  +   ++           S A +
Sbjct: 81  EVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEI 140

Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266
                K       +P  +R     I           +   +S  E+ A  E+  K+    
Sbjct: 141 DAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITL 200

Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309
           PE         + ++     E             +   + G  F  LA +  +  S    
Sbjct: 201 PEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNG 260

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T   + ++ 
Sbjct: 261 GDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRN 317

Query: 370 DIANQMRITKASEKVKEDYKRL 391
            +   +   KA +      + L
Sbjct: 318 SVRQYIFQQKAEQATVNLLRDL 339


>gi|325137107|gb|EGC59703.1| rotamase [Neisseria meningitidis M0579]
          Length = 360

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 80/262 (30%), Gaps = 30/262 (11%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213
           ++++R  +                 ++        +  +   ++           S A +
Sbjct: 93  EVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEI 152

Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266
                K       +P  +R     I           +   +S  E+ A  E+  K+    
Sbjct: 153 DAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITL 212

Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309
           PE         + ++     E             +   + G  F  LA +  +  S    
Sbjct: 213 PEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNG 272

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T   + ++ 
Sbjct: 273 GDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRN 329

Query: 370 DIANQMRITKASEKVKEDYKRL 391
            +   +   KA +      + L
Sbjct: 330 SVRQYIFQQKAEQATVNLLRDL 351


>gi|325131008|gb|EGC53735.1| PPIC-type PPIASE domain protein [Neisseria meningitidis OX99.30304]
          Length = 339

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 80/262 (30%), Gaps = 30/262 (11%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213
           ++++R  +                 ++        +  +   ++           S A +
Sbjct: 72  EVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEI 131

Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266
                K       +P  +R     I           +   +S  E+ A  E+  K+    
Sbjct: 132 DAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITL 191

Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309
           PE         + ++     E             +   + G  F  LA +  +  S    
Sbjct: 192 PEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNG 251

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T   + ++ 
Sbjct: 252 GDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRN 308

Query: 370 DIANQMRITKASEKVKEDYKRL 391
            +   +   KA +      + L
Sbjct: 309 SVRQYIFQQKAEQATVNLLRDL 330


>gi|254805678|ref|YP_003083899.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis alpha14]
 gi|254669220|emb|CBA08040.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis alpha14]
          Length = 351

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 80/262 (30%), Gaps = 30/262 (11%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213
           ++++R  +                 ++        +  +   ++           S A +
Sbjct: 84  EVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEI 143

Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266
                K       +P  +R     I           +   +S  E+ A  E+  K+    
Sbjct: 144 DAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITL 203

Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309
           PE         + ++     E             +   + G  F  LA +  +  S    
Sbjct: 204 PEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNG 263

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG F+   +   +  +++ +L K G     +   FG+ I  ++ ++ + T   + ++ 
Sbjct: 264 GDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRN 320

Query: 370 DIANQMRITKASEKVKEDYKRL 391
            +   +   KA +      + L
Sbjct: 321 SVRQYIFQQKAEQATVNLLRDL 342


>gi|148653552|ref|YP_001280645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
 gi|148572636|gb|ABQ94695.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
          Length = 460

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/420 (12%), Positives = 117/420 (27%), Gaps = 73/420 (17%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
           S +  +  V    +  S  +++       I        +++R     L   +L++L+   
Sbjct: 49  STNGMIALVNDTPILKSQLVSAMATAQARIQASGQPAPSAQR-----LQNDVLNSLILRQ 103

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL--AREGINEKEYIDHY 155
                ++  G+  D   V   +AR   F       S       L   + G          
Sbjct: 104 LQLDMVKRAGIRPDADVVNQSLAR---FAQSQGLTSLSQLQQTLDAKQPGSYASLRAQVI 160

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR---------------SVDYIVLNNR 200
            +   +          +R +   +D         R               S DY  +   
Sbjct: 161 EEESLKALQQSQVANRVRITEQDIDAFLASPEAQRLQSAEYRTIHIRIPFSDDYNRITES 220

Query: 201 HVPAIADPSNAV-------------LTQWFEKYKDNYRAPEY----------------KR 231
                   +                L +       NY AP                   +
Sbjct: 221 EKQTALQIAQQAKNLLMNTDDAQSVLDELSAGIAKNYVAPVQGGDMGYHEASGLPTDIAK 280

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKE 282
               L      E +I     ++    +K            V  ++            +++
Sbjct: 281 QITPLNVGQVTEPQITPEGIDVVKLVDKRNNDNMIIPQWKVRHILIKTDEQNSDALAEQK 340

Query: 283 ADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
            ++ ++ L+    F  LA     + G +     L   ++  +      + +     KGD+
Sbjct: 341 INDLYEQLRHDADFSALASTYSNDPGSAGRGGDLDWVAEGQMV-PEFEE-MMKRTPKGDY 398

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
           +      FG+ I  V + +         VK+++A +    + + + +ED+  L+E  A  
Sbjct: 399 SIPFKSQFGWHILKVEDTREKDVS--DTVKRNLAREALYQRLAPQAQEDW--LQELRANA 454


>gi|296532547|ref|ZP_06895259.1| peptidyl-prolyl cis-trans isomerase [Roseomonas cervicalis ATCC
           49957]
 gi|296267124|gb|EFH13037.1| peptidyl-prolyl cis-trans isomerase [Roseomonas cervicalis ATCC
           49957]
          Length = 330

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 7/148 (4%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQG--- 304
           + + L+A Y++        E      ++   + EA  A + +++ G  F ++A  +    
Sbjct: 143 TPEALRARYDREIAGKPGEEEVHARHILTATEAEARAALEEVRRPGADFAEVARRRSTGP 202

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVS 363
            +     LG F K  +     A++ F+L + G  +   +  +FG+ I  V   + +   S
Sbjct: 203 GTQQGGDLGFFKKGDMV-PEFAEAAFAL-QPGQISQAPVRSAFGWHIIKVEERRTAPVPS 260

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391
           F+E  +++         +  V+      
Sbjct: 261 FEESAEELRKAAFEEAVNAAVESTVAAA 288


>gi|126665822|ref|ZP_01736803.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
 gi|126629756|gb|EBA00373.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
          Length = 268

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 18/172 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-----------QKEADEAFQSLKKGKK 295
           + +  + +  +  N  ++ SP +  V  ++              ++  D+  ++L +G+ 
Sbjct: 91  DPTEQDCERFFNANPRRFCSPVVMAVSHILLAAAPDDVAELMRQEEVGDQLLKALFEGRS 150

Query: 296 -FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F  LA++     S     SLG  SK    D      + +L K+G  + +I   +GY I 
Sbjct: 151 RFDDLAKQYSACESRHQSGSLGQISKGQTVD-EFERPVLNL-KEGLHSGLIETRYGYHIV 208

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMD 402
            V        + ++ VK  I   +  +      ++  + L  E    G  ++
Sbjct: 209 RVDQRIDGQPLPYEHVKPKIRQYLSESVTRRACRQYLQVLAAEAGVEGVDLE 260


>gi|296113335|ref|YP_003627273.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis RH4]
 gi|295921029|gb|ADG61380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis RH4]
 gi|326563565|gb|EGE13824.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           12P80B1]
 gi|326570173|gb|EGE20218.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           BC8]
          Length = 434

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/405 (14%), Positives = 122/405 (30%), Gaps = 74/405 (18%)

Query: 31  SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
             ++   S    V  V  + +  S    +  + +    QK G  V  ++A+++      L
Sbjct: 23  QASISGNSHDGIVAVVNDEIILKSELNQA-TELVATEIQKNGGNVTQDQAQTL-----AL 76

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI-NEK 149
           D L++       I   G+  +   +  ++ +     G +   S   F S+L  E   +  
Sbjct: 77  DELINEKLQLAIINRAGVIPNDEVIDQQLLQIAQSQGVN---SLSEFQSKLDAERAGSYV 133

Query: 150 EYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFENR--SVDYIVL--------- 197
               +  +  +   +        +R ++  +D         R   V Y +L         
Sbjct: 134 ALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRLLHIRVPYLDN 193

Query: 198 --------NNRHVPAIADPS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
                       V      S       +  +      Y  + +  +   I+         
Sbjct: 194 TASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLINATALPPAIA 253

Query: 243 EKK------------IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQK 281
            K             + ++  ++     K ++            ++            ++
Sbjct: 254 AKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSSDIAEQ 313

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           + +  +Q L++G  F  LA              SLG  ++  +        + + AK GD
Sbjct: 314 KINAIYQQLQQGADFGTLAATYSDDTGSASQHGSLGWVNEGDMV-PEFETMMKNTAK-GD 371

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           F+      FG+ I  V++IK          + DI  Q R   A E
Sbjct: 372 FSTPFRSQFGWHILKVNDIK----------QHDITEQYRRNAAHE 406


>gi|88859123|ref|ZP_01133764.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas
           tunicata D2]
 gi|88819349|gb|EAR29163.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas
           tunicata D2]
          Length = 430

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/419 (10%), Positives = 122/419 (29%), Gaps = 67/419 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V +V    V  S       +         G  + ++ A    L  + ++ L++   L
Sbjct: 28  DKVVATVNEGVVLQSEIDTIINRVKSRALTD-GQSLPTDDA----LRLQAIERLINQELL 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E +GL+    ++   +        +      D+    +   G + + Y +     +
Sbjct: 83  MQMSERMGLQISDAQLDQTLMMMA---KEQGGTLADL-RKTIESSGESYQAYREEMRVEM 138

Query: 160 S-RTDVVGMFVGGMRPSNLLLDQAKRFYF------ENRSVDYIVLNN-----RHVPAIAD 207
           + +  +       +  S   ++             E   + +I+++            A 
Sbjct: 139 TTQQVLRSNVERRIYISLQEIENLLTILEQQGQTNEEYDIGHILIDLPADGNAQEIEDAK 198

Query: 208 PSNAVLTQWFEKYKDNYR-----------APEYKRISYILFDVHEKEKKIEISNDE---- 252
                + +   +    ++           A E  ++ ++  +         +   +    
Sbjct: 199 VRAEKVIKLLNEG-SEFKRIAIASSGGSKALEGGQLGWMSINEMPTLFAEAVKGKKAGEI 257

Query: 253 -----------LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQ----SLKK 292
                      +    +    +           ++       ++++A          LK+
Sbjct: 258 VGPLRSGAGFHIIKVQDIRGRQVVETVEVRSRHILIQPSIILSEEKARSMLAGFVKDLKE 317

Query: 293 GK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           GK  F  LA+E  +       G    ++       +  D++ SL K    +     ++G+
Sbjct: 318 GKADFATLAKEYSEDQGSALKGGEYDWTDPSTYVPAFRDTLLSLEKD-QLSEPFRSNYGW 376

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
            I  + + + +      +      N+ +    + K KE+    +  +     ++ +   
Sbjct: 377 HIVQLLDKRIADKTELAK-----RNRAQQMLFNRKFKEESFAWQREMREQAHIEILVDE 430



 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 100/301 (33%), Gaps = 37/301 (12%)

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
            +        + L   +++       G++ S+  LDQ      + +           +  
Sbjct: 64  TDDALRLQAIERLINQELLMQMSERMGLQISDAQLDQTLMMMAKEQGG-----TLADLRK 118

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
             + S      + E+            ++         E++I IS  E++      +++ 
Sbjct: 119 TIESSGESYQAYREE--------MRVEMTTQQVLRSNVERRIYISLQEIENLLTILEQQG 170

Query: 265 FSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLA---EEQGKSLSD 309
            + E   +  ++     +            A++  + L +G +F ++A       K+L  
Sbjct: 171 QTNEEYDIGHILIDLPADGNAQEIEDAKVRAEKVIKLLNEGSEFKRIAIASSGGSKALEG 230

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             LG  S   +P    A+++    K G+    +    G+ I  V +I+    V   EV+ 
Sbjct: 231 GQLGWMSINEMP-TLFAEAVKG-KKAGEIVGPLRSGAGFHIIKVQDIRGRQVVETVEVRS 288

Query: 370 -----DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
                  +  +   KA   +    K L+E  A   ++ +    ++  ++     D+    
Sbjct: 289 RHILIQPSIILSEEKARSMLAGFVKDLKEGKADFATLAKEYSEDQGSALKGGEYDWTDPS 348

Query: 425 V 425
            
Sbjct: 349 T 349


>gi|238789352|ref|ZP_04633138.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           frederiksenii ATCC 33641]
 gi|238794291|ref|ZP_04637904.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia intermedia
           ATCC 29909]
 gi|238722495|gb|EEQ14149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           frederiksenii ATCC 33641]
 gi|238726375|gb|EEQ17916.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia intermedia
           ATCC 29909]
          Length = 98

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++K+A++    L  G  F +LA++     S      LG F+K  +   +   ++F
Sbjct: 14  HILVDDEKQANDILAQLNNGANFQELAKKFSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 72

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L +       +   FGY I  V
Sbjct: 73  SCELLQP---YGPVKTQFGYHIIKV 94


>gi|188995374|ref|YP_001929626.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
           gingivalis ATCC 33277]
 gi|188595054|dbj|BAG34029.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 715

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 75/651 (11%), Positives = 181/651 (27%), Gaps = 88/651 (13%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           LE IR  +   +  + + V    F+I     S + F       V+ +  +K+    +   
Sbjct: 4   LEKIRGKAGLLI--VVVGVALFAFIIGDFLRSGSTFFRQSQEVVLDINGEKIKIYDYQQR 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            K       Q  G  +  E+     L+ ++    V    L Q  + +GL      +   I
Sbjct: 62  LKAMEKRAEQS-GTKITDEQ--RASLNNQLAQQYVQDYVLGQQADKLGLTVSPEELLALI 118

Query: 120 ARS--------PLFHGKDNKF--SHDVFVSRLA-------------REGI-----NEKEY 151
                        F  +              L              ++G      +E + 
Sbjct: 119 IGDGVQPSMFAQQFFSRFGINGSDRAAVNDFLNHISDKQIKSQPAEQQGYLYEIQSEWQS 178

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSN 210
           ++         + +G  +      N  +D        +R V         +       ++
Sbjct: 179 VEKQIADTRMQEKLGALLTRSYAIN-DIDARYESGVPSREVAVAQAPISVIGDTSIRATD 237

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
             + +++ ++K+ +                                Y     +Y S ++ 
Sbjct: 238 EEIKKYYNEHKEFFVQK-----------------------------YPSTIVQYISSQVV 268

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
              Q +   + E  +    +++      LA          S  + ++    ++ ++ + F
Sbjct: 269 PSAQDMANAEVEMQKVRTEMQQQSDVEALARNYSDKFVSPSFLTSAELDRMNLGVSITEF 328

Query: 331 -SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
              A  G+    +  +  Y +  +   K      F+ +   I   + +  A+        
Sbjct: 329 IKTATPGEVNIPMLENNHYSLVKLVAKKSG----FESLNVAI---IALDSAN---LSKAD 378

Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
            L   L  G      +R                   +  ++      E +  ++      
Sbjct: 379 SLCNALNEGGDFAAAARTFSADPTSRETGGVLTFPNQFTQMPDSTITEAMAQQLHLDTLF 438

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
               + V   +        K   P     +++             + E  + K  +L  E
Sbjct: 439 SIPSNRVIKMNQDKFVFLAKAFNPK--PAVDKYKIAYI-GVDANFSDETYNKKFMELN-E 494

Query: 510 YSKEGKNFRDIGKNL---GASLLTTNQINRMDN--ENKFFGYDGISQVFSGPVEMVKCFP 564
               GK F  + +     G S+    ++    +   N     + +S       + V    
Sbjct: 495 MLNSGKPFPKLAEQARSKGLSIEENAEVTVFSDHVGNIPSSREIVSWALKAEKDEVNEKI 554

Query: 565 IENGLSYVVFKVTNSKVGP-VQEKDKFISYLTQMMNKD-LLDSVIAYLKSQ 613
              G  Y+V      ++    +  +K    +   +  +   + ++A LK++
Sbjct: 555 FRCGTDYLVIAAVKDQIPSGYRPVEKIKEQIANQLRVEKQGEKLVADLKAK 605



 Score = 38.0 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 13/163 (7%)

Query: 285 EAFQSLKKGKKFIQLAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           E  + L  GK F +LAE+   +G S+ + +  +   +++ ++  +  I S A K +   V
Sbjct: 491 ELNEMLNSGKPFPKLAEQARSKGLSIEENAEVTVFSDHVGNIPSSREIVSWALKAEKDEV 550

Query: 342 IHGSFG-----YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
               F       VIA V +  PS     +++K+ IANQ+R+ K  EK+  D K       
Sbjct: 551 NEKIFRCGTDYLVIAAVKDQIPSGYRPVEKIKEQIANQLRVEKQGEKLVADLKA-----K 605

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
              +++  +         L  + ++ +  +  E+A       L
Sbjct: 606 KLDNLEAYASAMNTKIDTLAGISYSPRGGEAAELAGYAMSTPL 648


>gi|297569281|ref|YP_003690625.1| SurA domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925196|gb|ADH86006.1| SurA domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 326

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/359 (11%), Positives = 102/359 (28%), Gaps = 75/359 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  Q +  S              +  G               ++L  ++    +
Sbjct: 34  DRVVAEVNGQIITLSELEAEMATIGEDFLR--GVPAGERAKARQEAQSQVLSGMIDQILV 91

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           ++  +  G+      +   +A+      +DN+ S +  +  L R G   ++Y       +
Sbjct: 92  ERQAQRRGIFVGEREIDAAMAQIM----EDNRLSREELIRELERSGTTLEQYRQTLRTQI 147

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            +  ++ +                                  V          + +++E+
Sbjct: 148 LQARLLNL---------------------------------EVRERIVIPENRIRRYYEE 174

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +  +    +   +                          +    +   +    E      
Sbjct: 175 HYADGSQQQGYHLL-------------------------QMGFAWDGDDQNRAE-----A 204

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           ++ A  A   +  G  F QLA E      + S   LG F ++ + D  +   I ++   G
Sbjct: 205 KQRATGARDRVLTGGSFRQLARELSDLPSATSGGDLGVFEQDELAD-EMRRHILAMT-PG 262

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           + TP++     Y    +       +  +++++++I   +      E  +     L E +
Sbjct: 263 ELTPIMEIGGAYQFFKLLA-GGGVSRPYEDMREEIREILYQQALEENFERWVSNLREDV 320


>gi|238765154|ref|ZP_04626087.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           kristensenii ATCC 33638]
 gi|238696644|gb|EEP89428.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           kristensenii ATCC 33638]
          Length = 99

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++K+A++    L  G  F +LA++     S      LG F+K  +   +   ++F
Sbjct: 15  HILVDDEKQANDILAQLNNGANFQELAKKFSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 73

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L +       +   FGY I  V
Sbjct: 74  SCELLQP---YGPVKTQFGYHIIKV 95


>gi|330996060|ref|ZP_08319954.1| PPIC-type PPIASE domain protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329574057|gb|EGG55635.1| PPIC-type PPIASE domain protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 459

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 57/512 (11%), Positives = 147/512 (28%), Gaps = 113/512 (22%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSV----GRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +    FL  G+   LF+ S ++ V  V    G + +  S    +            G  +
Sbjct: 8   LYAFVFLFGGIQMHLFAQSPNNVVDEVIWVVGDEAILRSDVEAA--------RMDFGANI 59

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
           +      +       + L          +   +E D+ ++   +                
Sbjct: 60  SGNPYCVIP------EQLAIQKLFLHQAQLDSVEVDNSQISASM--------------EA 99

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
                + R G ++++  ++Y K +++                + +       E  +V  +
Sbjct: 100 RLNELIMRAG-SKEKLEEYYHKTMTQ----------------IREMMFESLKEQYTVQKV 142

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP---EYKRISYILFDVHEKEKKIEISNDE 252
                ++ +    + A + ++F+   ++   P   +   +  I       +++IE    E
Sbjct: 143 R---ENLTSDIKVTPAEVRRYFKDMPED-SLPWISDQVEVQIITQQPRIPQEEIERVKAE 198

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLA----EEQGKSL 307
           L+                                   +  G+  F  LA    E+ G + 
Sbjct: 199 LRDY------------------------------TDRVNNGESSFSTLAILYSEDPGSAR 228

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
               +    +  + D + A+  FSL      + V+   +G+ I  + + +         V
Sbjct: 229 YGGEMDYVGRGEL-DPAFANVAFSLTDPKKISKVVESEYGFHIIQLVDKRGDKVK----V 283

Query: 368 KKDIAN-QMRITKASEKVKEDYKRLEEFLALGTSMDEIS---------RREKIVSIDLPL 417
           +  +   ++        +       E+      S +E +         R  + +  ++  
Sbjct: 284 RHILRKPKLAQADIDTTMVRMDSIAEDVRKEKYSFEEAATFLSDDKDSRNNRGLMTNVKF 343

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY---MWVQIKESIPA 474
               G  ++           ++   V         +  + +          V++K  I A
Sbjct: 344 DQSVGDQIRTSRFQLQELPAEVAKVVSTMKTGEISNPFLMVNSKGKEVCAVVKLKTHIKA 403

Query: 475 RDRKLEE----VLTDVKKDWKTVKTAEEVSSK 502
               + E    +   V    +  K  + +  K
Sbjct: 404 HRASMSEDFQVLKDVVMAKLQEQKINQWIKDK 435


>gi|226952980|ref|ZP_03823444.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ATCC 27244]
 gi|226836301|gb|EEH68684.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ATCC 27244]
          Length = 437

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/426 (11%), Positives = 117/426 (27%), Gaps = 72/426 (16%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           K  +       L  L         S   F+      V  V    +  S  +    +    
Sbjct: 4   KHFQHIFRATVLAALISS------SMHSFAQPADEVVAIVDSSVILKSDLVQGIAEAEHQ 57

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA------ 120
           +  +   V   +  +      ++LD L+      + ++  G++ D   +   +       
Sbjct: 58  LKAQNQTVPPKQYLQM-----QVLDQLIIRQAQLEQVKRYGIKPDENSLNAAVLRVANQS 112

Query: 121 ---RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV------------ 165
                  F  K +  +   + +   R  I E   I    +    + +             
Sbjct: 113 GSNSLSAFQQKLDAIAPGTYENL--RNRIAEDLAIGRLRQQQVMSRIKISDHDVENFLKS 170

Query: 166 --GMFVGGMRP-------SNLLLDQAKRFYFENR-----SVDYIVLNNRHVPAIADPSNA 211
             G    G +        S    ++ ++   E R     S D   ++++          A
Sbjct: 171 PEGQAALGTQVHVLHMRISGTDNNEVQKVAEEVRRSLATSNDPKAISSKLSTGTVTVDGA 230

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE--LQAEYEKNKEKYFSPEI 269
            +      ++     P           V +    + + +    L+    K  ++      
Sbjct: 231 DM-----GFRALSEIPTELAARVTPLQVGQTTGLVNVRDGTHVLKLLERKQNDQRALVPQ 285

Query: 270 RTVEQLVFPN---------QKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFS 316
                ++            ++  D  +  +K G+ F  LA     + G +    +LG  +
Sbjct: 286 YKTRHILIQTSEVVSSDRAKQMIDSLYNRIKAGEDFATLAATFSNDPGSARDGGNLGWVN 345

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
              +        +      G  +      FG+ I  V++ +        E ++ +  Q+ 
Sbjct: 346 AGVMV-PEFEK-VMKEIPVGQLSEPFQSQFGWHILEVTDTRQQDMTK--EAQERMTRQIL 401

Query: 377 ITKASE 382
             +  E
Sbjct: 402 GERQFE 407



 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 61/185 (32%), Gaps = 9/185 (4%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEAD 284
            ++       +   +I+IS+ +++   +  + +        V  +          QK A+
Sbjct: 142 DLAIGRLRQQQVMSRIKISDHDVENFLKSPEGQAALGTQVHVLHMRISGTDNNEVQKVAE 201

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIH 343
           E  +SL        ++ +       +         + ++    +   +  + G  T +++
Sbjct: 202 EVRRSLATSNDPKAISSKLSTGTVTVDGADMGFRALSEIPTELAARVTPLQVGQTTGLVN 261

Query: 344 GSFGYVIAHVSNIKPSFTVSFQ-EVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSM 401
              G  +  +   K +   +   + K   I  Q     +S++ K+    L   +  G   
Sbjct: 262 VRDGTHVLKLLERKQNDQRALVPQYKTRHILIQTSEVVSSDRAKQMIDSLYNRIKAGEDF 321

Query: 402 DEISR 406
             ++ 
Sbjct: 322 ATLAA 326


>gi|145588566|ref|YP_001155163.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046972|gb|ABP33599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 279

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 7/160 (4%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPE---IRTVEQLVFPNQKEADEAFQSLKKG 293
            ++     +  I++ ++QAEY +               +  +    + EA  A   +KKG
Sbjct: 115 LELSTFMAQNPITDADVQAEYNREVSSLGPQGMITEYKISDIAVATEAEAQAALDRIKKG 174

Query: 294 KKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           + F ++A       +     + G      +P   +   + +L K    +  I    G+ +
Sbjct: 175 EPFDKVARSVSLGPNKAQGGAAGWVQPGQVP-PQIGSVLATLGKGQVCSAPIQMQQGWYL 233

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
             V + K S   +F++ K+ +   +   K  E V +  K 
Sbjct: 234 VKVEDKKSSKPPTFEQAKQAVRAGLIQKKQYEFVAKIAKD 273


>gi|269926821|ref|YP_003323444.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790481|gb|ACZ42622.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 380

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 100/273 (36%), Gaps = 29/273 (10%)

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL------LLDQAKR 184
            F  +  V+ +  E I  KE+     K   +  +  M +  +           L ++  +
Sbjct: 84  NFDPNGIVAVVNGEKITNKEFYQELEKRYGQDLISDMVITKLIEQEARKRGVSLSNEDMQ 143

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
              +     +   +   +    + +   L +               ++  +         
Sbjct: 144 KALQQLQTAFPGQSIEEIAQGQNMTGDQLRE---------------QVRVMALLDKMLAP 188

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           +++++  + +  Y +N + + S E   + Q+V  N+++A +A Q+L+ GK   ++  + G
Sbjct: 189 QVKVTEQDARNFYNQNPQVFQSQEQLRLGQVVTDNEQQAADAAQALRDGKDLKEVIAKYG 248

Query: 305 K-----SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIKP 358
                 +  +  LG  S   + D  L  ++  +A  GD +  I    G Y +  + + K 
Sbjct: 249 SKSPERAKKNGDLGYKSLNEL-DPQLGMTVMQMA-VGDVSDPIRLPDGSYAVVKMIDRKG 306

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              + F +VK       +  K +  + +  + L
Sbjct: 307 GVQMPFDQVKDRAMELAKQDKINSMIPKFLEEL 339


>gi|282880884|ref|ZP_06289577.1| PPIC-type PPIASE domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305266|gb|EFA97333.1| PPIC-type PPIASE domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 475

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 89/236 (37%), Gaps = 27/236 (11%)

Query: 240 HEKEKKIEISNDELQA----EYEKNKEK-YFSPEIRTVEQLVFP------------NQKE 282
             + K   I++ +++      Y++   +   S  +  V  ++               ++ 
Sbjct: 93  DAQIKPTMITDADVEQKAHEIYQQTANRVNASGGLVKVSHILIALKQTAGEVDRRIAEQR 152

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKGDF 338
           AD  +++L KG  F +LA+      +  S G       +    +     +IFS+ KKG+ 
Sbjct: 153 ADSVYRALCKGANFGELAKRVSDDRASASRGGELPWLERGQTLE-EFDKAIFSM-KKGEL 210

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV--KEDYKRLEEFLA 396
           +  +    GY I  + + +  F   +  +K +I   +      +++  K+    +E   +
Sbjct: 211 SKPVQTPAGYHIIFLKDKRSFF--PYDSLKTEILQFIEQRGIRDQLISKKIQTAIEHAGS 268

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
             T  D ++++ K +    P + +  K+     +       ++  +       L++
Sbjct: 269 GVTEDDILAQKRKELVAKNPQLKYLIKEYHDGLLLFEVMTREIFSKAQNNAQALNE 324


>gi|89898918|ref|YP_521389.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
 gi|121956453|sp|Q223E5|SURA_RHOFD RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|89343655|gb|ABD67858.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
          Length = 459

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 59/470 (12%), Positives = 143/470 (30%), Gaps = 84/470 (17%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +  +    + ++ L  ++Q+    V+S+      L +++L+ L++     Q 
Sbjct: 55  VAVVNSEPITNNEVRAALQRVLQQLAQQGNPQVDSK-----TLVRQVLERLINEKAQLQL 109

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
             + G+ AD   +            + N+ +      RL +EG    ++ +     +  T
Sbjct: 110 ARESGIAADEAAIDQAEQNI----ARQNQLTVAELRRRLTQEGGVPGQFRNQLRDQILLT 165

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            +                                   R V   A  S   + Q+  + + 
Sbjct: 166 RLRE---------------------------------REVEPRARVSELEIDQFLREQQS 192

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
           +  A +   ++ +L  V +    ++++  + +A+    + +     +  V +    + K 
Sbjct: 193 STPAVQQINLAQVLVSVPDTATPVQVTALQARAQRALARARAGEDFVTLVREFSDASDK- 251

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
                           LA       +   LG  + +  P     ++  +LA  G+ + ++
Sbjct: 252 --------------ASLA-------NGGELGLRTADRYP-PLFLEATHNLA-VGEISALV 288

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI---TKASEKVKEDYKRLEEFLALG- 398
               G+ I  V   K +   +    +    + +            ++     ++ +A G 
Sbjct: 289 RSGAGFHILKVLEKKSAALPAMTVTQSRARHILLRVSPQLTESAARDKLNEFKKRVAAGQ 348

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
                ++R               G          +P  E ++  +     P      +  
Sbjct: 349 ADFAALARDHSQDG----SAAQGGDLGWANPGMFVPEFEAVMNSLT----PGQISEPLV- 399

Query: 459 PDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEVSSKANQL 506
              S   V + + +  R   L   E    V+      K  E   S A  +
Sbjct: 400 ---SRFGVHLIQLMERRQATLSPQEQREAVRAMLHEKKLDEAYISWAQDV 446


>gi|332016995|gb|EGI57794.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Acromyrmex
           echinatior]
          Length = 127

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G+KF ++A    +    S   LG  ++  +      D+
Sbjct: 35  KVRHILCEKQSKILEALEKLKAGQKFNEIAATYSEDKARSGGDLGWMTRGSMVGP-FQDA 93

Query: 329 IFSLAKKGDFTPVI-----HGSFGYVIAHVSNIK 357
            F+L      +PV         FGY I  V   K
Sbjct: 94  AFALPVSSLGSPVYTDPPVKTKFGYHIIMVEGKK 127


>gi|167723994|ref|ZP_02407230.1| putative rotamase [Burkholderia pseudomallei DM98]
 gi|167828511|ref|ZP_02459982.1| putative rotamase [Burkholderia pseudomallei 9]
 gi|167898574|ref|ZP_02485975.1| putative rotamase [Burkholderia pseudomallei 7894]
 gi|167906920|ref|ZP_02494125.1| putative rotamase [Burkholderia pseudomallei NCTC 13177]
 gi|167915279|ref|ZP_02502370.1| putative rotamase [Burkholderia pseudomallei 112]
          Length = 180

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +    + +  D++ A Y + K K  + E   +  L  P + +A      L +G  F +L
Sbjct: 25  DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 83

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A       S      +G  ++  + DV+  + I ++ K G F+  I GS GY + +V + 
Sbjct: 84  AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 141

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     S  ++++ +    R+ K    + E    +
Sbjct: 142 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 176


>gi|254229741|ref|ZP_04923149.1| ppic-type ppiase domain protein [Vibrio sp. Ex25]
 gi|262392437|ref|YP_003284291.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. Ex25]
 gi|151937708|gb|EDN56558.1| ppic-type ppiase domain protein [Vibrio sp. Ex25]
 gi|262336031|gb|ACY49826.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. Ex25]
          Length = 427

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 57/378 (15%), Positives = 122/378 (32%), Gaps = 88/378 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    +  S    + K       Q  G  + S       L +++++ L+     
Sbjct: 25  DKVAVIVNDGVILQSDIETAMKTLQANARQS-GKSLPSASV----LKEQVVEKLIIDTLQ 79

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG+  D  R+   IA       ++N+ S +   + +  EG++  E+ +   K +
Sbjct: 80  GQEADRIGVRIDDNRLNQAIAEI----ARNNEQSVEQLAASVESEGLSYPEFREQIRKEI 135

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFE 218
           + ++     V                    R ++ +      +    +  +NA +     
Sbjct: 136 AASEARNALV-------------------RRRINILPAEVDSLAEQLSQETNATVQ---- 172

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                       +I +I     + ++K  +  +                           
Sbjct: 173 -----------YKIGHIQLRFSDDKEKSAVEAE--------------------------- 194

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            +  A +    L +G  F ++A       K+L     G   KE +P    AD I  +  K
Sbjct: 195 AKALAKK----LNEGADFTEMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNK 248

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKR 390
           G          G+ I  + ++K   TV+  EV      I     +    A +++ E  +R
Sbjct: 249 GSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGAKKQLNEFVRR 308

Query: 391 LEEFLALGTSMDEISRRE 408
           ++   A   +  +++ + 
Sbjct: 309 IK---AGEATFAQLATQY 323


>gi|42521883|ref|NP_967263.1| peptidyl-prolyl cis-trans isomerase C [Bdellovibrio bacteriovorus
           HD100]
 gi|39574413|emb|CAE77917.1| peptidyl-prolyl cis-trans isomerase C [Bdellovibrio bacteriovorus
           HD100]
          Length = 90

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
                 ++  +Q EA++  ++LK GK F +LA+   +  S      LG F++  + D   
Sbjct: 2   KIRASHILVKHQYEAEDILRALKSGKTFEELAQRYSQCPSARVGGDLGVFAEGRM-DEVF 60

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
            ++ F+L         +   FGY I   + 
Sbjct: 61  EEAAFALKVNETTLHPVRTRFGYHIIRRTE 90


>gi|310639535|ref|YP_003944293.1| ppic-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           polymyxa SC2]
 gi|309244485|gb|ADO54052.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           polymyxa SC2]
          Length = 316

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 87/248 (35%), Gaps = 19/248 (7%)

Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
           +EGI+E++++    K      ++ M     +       +      +      +  +++  
Sbjct: 51  QEGISEEQWVAELKKRYGTNTLLQMLNR--KAVQAEAKRLGIKITQEDLQQVLEQDSKGY 108

Query: 203 PAIADPSNAVLTQWFEKYKDNY---RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
            +           +FE+ +  +            Y +       + I++   E+   +E+
Sbjct: 109 DSE--------HAYFEEMQRQFGLNPVDLRNEAEYRIGLEKIATQGIQVEETEIDEYWEQ 160

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS------DISLG 313
           + E++   +   +  +     +EA+     +K+G+ F  L  E   S +         LG
Sbjct: 161 HPEEFAVGKQIKLAAIYVAKAEEAETLLDRVKQGESFDMLLREHSVSGNPLGEDHSGQLG 220

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
              +                  GD    I  + GY + +V +++   +   Q++++ I  
Sbjct: 221 WLDEYDPFQPEAVMKAARELSSGDVAGPISVNDGYAVIYVQDVRLKNSPDKQQIRQQIRR 280

Query: 374 QMRITKAS 381
            + + +A+
Sbjct: 281 SLALAQAA 288


>gi|146308191|ref|YP_001188656.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
 gi|145576392|gb|ABP85924.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
          Length = 93

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  ++ + +E   +++ G  F QLA++     S      LGSF    +    
Sbjct: 2   ARATARHILVASEDKCNELKAAIEGGADFAQLAKDNSSCPSGRNGGDLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A  G     +   FGY +  V++ +
Sbjct: 61  FDTVVFS-APVGVVQGPVKTQFGYHLLEVTSRQ 92


>gi|86143068|ref|ZP_01061490.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Leeuwenhoekiella blandensis MED217]
 gi|85830513|gb|EAQ48972.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Leeuwenhoekiella blandensis MED217]
          Length = 481

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/385 (13%), Positives = 129/385 (33%), Gaps = 47/385 (12%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP-------- 208
           + L +  V G  +      + L++   + Y  +  +D +++N   + +            
Sbjct: 79  ESLKQQKVEGQDLSTCSVMDKLMED--KLYAHHAVIDSVMINEEQIRSYTQQQIDYFVNQ 136

Query: 209 --SNAVLTQWFEKYKDNYRAPE----YKRISYILFDVHEKEKKIEISNDELQAEY----E 258
             S   + +++ K K +    E     +             ++IE++ +E+++ Y    E
Sbjct: 137 LGSEEKVLKFYRKEKMSDLKKELLELNRNQELAKAMQQNIVEEIEVTPEEIRSYYKELEE 196

Query: 259 KNKEKYFSP-EIRTVEQLVFPNQKEADEAFQSL--------KKGKKFIQLA----EEQGK 305
               ++    EI  ++ +    Q+E  +    L        + G  F   A    E++  
Sbjct: 197 DGLPQFGVELEISKIQIIPEVPQEEKQKVIDQLNGYRNDILENGSSFATKAVLWSEDEST 256

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 +    ++        D  FSL ++G+ +      FGY I  V  I+        
Sbjct: 257 RGDGGLIRDVDRKSQFVKEFRDVAFSL-QEGEVSKPFETEFGYHIIKVEKIRGQKIDLRH 315

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
            ++           A +K+++  KR+E+  +    +  E S  ++  S    +++   +D
Sbjct: 316 ILRIPKVTSAAEAAAKDKIEKIRKRIEDGEITFAEAAKEFSDEKETASDGGIMINPTTQD 375

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR------- 477
              +     P     +  +   +  ++ ++        Y    + + I   +        
Sbjct: 376 RMFELKNLPPELYPKVQNLKEGEVSIAFNNPTRTGKTRYEIYTVSDRIEEHEADFAIDYV 435

Query: 478 -----KLEEVLTDVKKDWKTVKTAE 497
                 L+       + W+  K AE
Sbjct: 436 KIKNFALQAKRIKAIEKWQDEKIAE 460


>gi|152999582|ref|YP_001365263.1| SurA domain-containing protein [Shewanella baltica OS185]
 gi|160874201|ref|YP_001553517.1| SurA domain-containing protein [Shewanella baltica OS195]
 gi|217974467|ref|YP_002359218.1| SurA domain-containing protein [Shewanella baltica OS223]
 gi|151364200|gb|ABS07200.1| SurA domain protein [Shewanella baltica OS185]
 gi|160859723|gb|ABX48257.1| SurA domain [Shewanella baltica OS195]
 gi|217499602|gb|ACK47795.1| SurA domain protein [Shewanella baltica OS223]
 gi|315266433|gb|ADT93286.1| SurA domain [Shewanella baltica OS678]
          Length = 434

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 114/371 (30%), Gaps = 71/371 (19%)

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
           N        L  ++++ L+      Q  + IGL     ++   I           K S  
Sbjct: 59  NQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KMSVA 114

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
               ++  EG++  +Y         R  +      G         + +R   + R     
Sbjct: 115 QMQQKIESEGLSFSQY---------REQLREEITLG---------EIQRIQVQRR----- 151

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
                        S   +T   +  ++        +I +IL DV       +        
Sbjct: 152 ----------IQVSPQEITSLVKLIQEQGMKDVEYQIGHILIDVPNNPTSEQ-------- 193

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
                               +  + K A+   + LK G+ F + A         +  G +
Sbjct: 194 --------------------LESSSKRANIVLERLKSGEDFRRTAIASSSGPKALEGGIW 233

Query: 316 SKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IAN 373
               I +  +L   + + AK GD    I    G+ I  + + +   T   +EV+   I  
Sbjct: 234 DYMNINEMPTLFAEVINGAKTGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILL 293

Query: 374 QMRITKASEKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
           +     + ++ K   ++ L++  +     ++++R+    S D       G+    +    
Sbjct: 294 KPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQY---SEDPGSATKGGELGWAEPSIY 350

Query: 433 IPYKEQLLFRV 443
           +P   Q L  +
Sbjct: 351 VPEFAQTLNSL 361



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 14/109 (12%)

Query: 268 EIRTVEQLVFP-----NQKEADEAFQS----LKKGK-KFIQLAEEQGKSLSDISLGS--- 314
           E      ++       ++  A    +     ++ G+ KF  LA +  +     + G    
Sbjct: 284 EEVRARHILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSATKGGELG 343

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           +++  I     A ++ SL K    +     + G+ I  +   + +    
Sbjct: 344 WAEPSIYVPEFAQTLNSL-KTDQISEPFRTTHGWHITQLEERRKTDATD 391


>gi|297568758|ref|YP_003690102.1| hypothetical protein DaAHT2_0779 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924673|gb|ADH85483.1| hypothetical protein DaAHT2_0779 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 296

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 79/187 (42%), Gaps = 6/187 (3%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           + +        E   K++   ++LQ  Y  N E++ + E   + ++V  + +EA +    
Sbjct: 107 RTLLVNTLIEQELAPKVQFGEEDLQEYYRNNPEEFMTREKVRLSRIVVGSAEEAQQVRAR 166

Query: 290 LKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH-GS 345
           L   + F  +A++     ++ +   LG   ++ + +   A   F++   GD +       
Sbjct: 167 LLADEDFAAVAQDLSLEQETAAGGDLGFVERDALSERE-AHLAFNVLGLGDISSPQELAE 225

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
             +V+  +++++   TV ++E+K  +A +M         ++    L++   +  S + I 
Sbjct: 226 NRFVVIKLTDLQ-GETVPYEEIKNLLAQRMETFGRKAAFEDFVATLKQDRKIEFSAEAIQ 284

Query: 406 RREKIVS 412
           +  +   
Sbjct: 285 QLMQEAG 291


>gi|311104077|ref|YP_003976930.1| chaperone surA [Achromobacter xylosoxidans A8]
 gi|310758766|gb|ADP14215.1| chaperone surA [Achromobacter xylosoxidans A8]
          Length = 532

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 81/319 (25%), Gaps = 45/319 (14%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V +  +      ++  +  G +  + G  V  ++     L  ++L  L+     
Sbjct: 64  DGIAAVVDKDVITLRELRDASLRISGELKSR-GIQVPDDQ----TLQHQVLQRLIMERVQ 118

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               + +G+  D  +V   I          NK +       + + G +   Y       +
Sbjct: 119 RHEADRLGIRVDDAQVDQAIQTIAA----RNKITVAQLRQEIEKSGTHWDGYRKSLRDEI 174

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
               +        +  S+  +D       + R+  +                    Q   
Sbjct: 175 RTDRLRQRAVDSTIVISDAEVDAF--LKDQRRNPAFGAAPQAAPQPQPQAQPQPEPQ--- 229

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                                   +  + +                 SPE       +  
Sbjct: 230 ----------QAAAPSGPMLYALAQILVRVPEG-------------SSPEQ------LAA 260

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGD 337
            +K+A+      K+G  F  LA         +  G    +       L     S  +KG 
Sbjct: 261 LRKKAEGLLAQAKRGDDFASLAAAASDGPEALQGGVMGVRPLDGWPDLFVQAVSNLQKGQ 320

Query: 338 FTPVIHGSFGYVIAHVSNI 356
            + +I    G+ I  V + 
Sbjct: 321 VSSLIQSGNGFHIIKVMDR 339


>gi|304405851|ref|ZP_07387509.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345094|gb|EFM10930.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
          Length = 403

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 89/273 (32%), Gaps = 41/273 (15%)

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY-----ILFDVHEKEKKI 246
           V Y  L +R        ++  +  + ++Y +   +    + +         DV    K+I
Sbjct: 136 VGYKTLYDRSSEDDKKSADTEVATFIKQYNEQLTSNAEMKKTVDAAGLTEKDVSGFYKQI 195

Query: 247 ---------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ---------------KE 282
                     +S+ +++AEYEKNK  Y    + +V  ++                   K 
Sbjct: 196 VTIRKYWERNVSDADIKAEYEKNKGGYN---LVSVRHILISTVDPSTGEEKRKDEEALKI 252

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP 340
           A E    L KG  +  LA +          G   +   P+  +A+          G    
Sbjct: 253 AKEVKAKLDKGGDWKALANQYSDDEGSKGNGGLYENASPNSWVAEFKEAAITQPVGTVGE 312

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR----LEEFLA 396
            +   +GY +  V   +      F+E+ +D+  Q++    + K+ +   +    L E + 
Sbjct: 313 PVKSQYGYHVMKVEKRES---KKFEELSEDVKTQVKTGAINTKMGDFMTKELPTLIEKIN 369

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
           L  +    +             D   K  +   
Sbjct: 370 LPKAETPAAGTGTDAGAGTGATDSTEKKDEATT 402


>gi|284008562|emb|CBA75119.1| chaperone SurA protein (peptidyl-prolyl cis-trans isomerase)
           [Arsenophonus nasoniae]
          Length = 433

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 112/365 (30%), Gaps = 61/365 (16%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V    V  S         + + ++  G  +  E A    L  +IL+ L+    + Q  
Sbjct: 31  AIVNDGVVLQSDVDGMLD-IVRINARNAGQQIPDENA----LRHQILERLIIDKIIMQIA 85

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
           E + ++     +   IA         N  +      RL+ +GIN + Y     + +   +
Sbjct: 86  EKMQIQIPDQAIDATIANIAA----QNGLTIGQLQQRLSMDGINLQNYRSDVRREMMIAE 141

Query: 164 VVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWFEK-Y 220
           V        +      +D            D  + L++  +P   +P+N       +   
Sbjct: 142 VRNNEVRRRITILPQEVDSLAAQLNSQAGQDANVNLSHILIPLPENPTNTQSQLAMDTVN 201

Query: 221 KDNYRAPE-----YKRISYILFDVHEKEKKIEISN-DELQAEYEKNKEKYFSPE------ 268
           K   +  +        I+Y       K  ++  S  +EL   + +  +     +      
Sbjct: 202 KIIAQLKQGADFGKLAITYSADPNALKGGQMGWSKVEELPTVFAQQIQHAKKGDIIGPIR 261

Query: 269 -----------------------IRTVEQLVFP---------NQKEADEAFQSLKKGK-K 295
                                        ++              +  +  Q +K G+  
Sbjct: 262 SSVGFHILKLNDIQRGNMPISVTEVKARHILIKLSPIMNNEQAHAKIQQIAQQIKTGQIT 321

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F + A++  +       G      +P   D +  D +  L+K G+ +  IH SFG+ +  
Sbjct: 322 FAEAAKKYSQDPGSALRGGELGWNMPNIYDPAFRDGLMRLSK-GETSQPIHSSFGWHLIQ 380

Query: 353 VSNIK 357
           + + +
Sbjct: 381 LEDTR 385



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 77/208 (37%), Gaps = 22/208 (10%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
              NYR+   + +       +E  ++I I   E+ +   +   +        +  ++ P 
Sbjct: 125 NLQNYRSDVRREMMIAEVRNNEVRRRITILPQEVDSLAAQLNSQAGQDANVNLSHILIPL 184

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
                           ++    LK+G  F +LA       + +  G      + ++    
Sbjct: 185 PENPTNTQSQLAMDTVNKIIAQLKQGADFGKLAITYSADPNALKGGQMGWSKVEELP--- 241

Query: 328 SIFSL----AKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKD-IANQMRITKAS 381
           ++F+     AKKGD    I  S G+ I  +++I+      S  EVK   I  ++     +
Sbjct: 242 TVFAQQIQHAKKGDIIGPIRSSVGFHILKLNDIQRGNMPISVTEVKARHILIKLSPIMNN 301

Query: 382 EKVKEDYKRLEEFLALGT-SMDEISRRE 408
           E+     +++ + +  G  +  E +++ 
Sbjct: 302 EQAHAKIQQIAQQIKTGQITFAEAAKKY 329


>gi|268319932|ref|YP_003293588.1| peptidylprolyl isomerase [Lactobacillus johnsonii FI9785]
 gi|262398307|emb|CAX67321.1| peptidylprolyl isomerase [Lactobacillus johnsonii FI9785]
          Length = 298

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 17/228 (7%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
           G +  S       +    ++     IV +        D +   + + + KYK  Y +   
Sbjct: 36  GKITESQYYDKMKESQAGQSTLASMIVSDALESQYGKDVTQKQVDKEYNKYKKQYGSQFD 95

Query: 230 KRISYILFDVHEKEKKIE---ISNDELQA------EYEKNKEKYFSPEIRTVEQLVFPNQ 280
             +          +  ++   ++   L+         EK   K + PE+ TV+ ++   +
Sbjct: 96  SVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQEKKAWKSYQPEV-TVQHILVSKK 154

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF-SKEYIPDVSLADSIFSLAKK 335
             A++  + L+ G  F +LA++             L +F S +   D S   + F L   
Sbjct: 155 STAEDVIKQLQDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTG 214

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              T  +   +GY +  +  IK     + +E KK I NQ+  + + ++
Sbjct: 215 EITTTPVKTQYGYHVIKM--IKHPAKGTLKEHKKQIDNQIYQSMSEDQ 260



 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 7/131 (5%)

Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMV 560
            + V++  ++G +F+ + K       T N    +   D+ +        +  F      +
Sbjct: 157 AEDVIKQLQDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGEI 216

Query: 561 KCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSV 616
              P++    Y V K+    +K    + K +  + + Q M++D  ++ SVIA +  +  V
Sbjct: 217 TTTPVKTQYGYHVIKMIKHPAKGTLKEHKKQIDNQIYQSMSEDQNVMRSVIATVLKRADV 276

Query: 617 TVHDNLIQRYL 627
           ++ D  ++  L
Sbjct: 277 SIKDKDLKNVL 287


>gi|289805043|ref|ZP_06535672.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 91

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 35/91 (38%)

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           ++ + + + + G+   +Y       L+   ++    G         D+      + R V 
Sbjct: 1   NNRYNAIVNQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVR 60

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
             V++   + A    ++  ++ ++++ K  +
Sbjct: 61  EAVIDVNALAAKQQVTDQEVSSYYDQNKVRF 91


>gi|167923109|ref|ZP_02510200.1| putative rotamase [Burkholderia pseudomallei BCC215]
          Length = 190

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +    + +  D++ A Y + K K  + E   +  L  P + +A      L +G  F +L
Sbjct: 35  DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSVLTVPGEADALRLRNQLIQGASFGEL 93

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A       S      +G  ++  + DV+  + I ++ K G F+  I GS GY + +V + 
Sbjct: 94  AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 151

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     S  ++++ +    R+ K    + E    +
Sbjct: 152 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 186


>gi|163848456|ref|YP_001636500.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526384|ref|YP_002570855.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
           Y-400-fl]
 gi|163669745|gb|ABY36111.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222450263|gb|ACM54529.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
           Y-400-fl]
          Length = 321

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 66/209 (31%), Gaps = 22/209 (10%)

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           +D  ++    +   A    A +    E+ +      +  +    L D +  +++      
Sbjct: 94  IDVELVVQAALAEGATVDEATIDSQVEQLRLAQAGGDEAQFLTFLQDNNIADEEELRRLL 153

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEADEAFQSLKKGKKFIQLAE-- 301
                 E+   K+ + E      ++           +  A+     L+ G  F  LA   
Sbjct: 154 RRDYLIEQMLLKHTTAEQVRARHILVAATPEEAESRKATAEAILAELQGGADFAALARAR 213

Query: 302 --EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
             + G +     LG   +    +    +++FS+ + G+   ++   FG+ I  V+     
Sbjct: 214 SDDPGSAAQGGDLGWAPRGVYVEP-FEEAVFSM-QPGEL-RLVQTDFGWHIIEVTE--GP 268

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDY 388
              SF +        +      E     +
Sbjct: 269 EVRSFTD-----RALLETQAGQEAFSATF 292


>gi|241662025|ref|YP_002980385.1| SurA domain-containing protein [Ralstonia pickettii 12D]
 gi|240864052|gb|ACS61713.1| SurA domain protein [Ralstonia pickettii 12D]
          Length = 500

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/410 (12%), Positives = 111/410 (27%), Gaps = 69/410 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +     +N           +   +    RA  +G   ++L+ L+     
Sbjct: 92  DEVVAVVNTDVITRRELLNRADLVERTFRAQNRPL--PPRADLLG---EVLEQLILERVQ 146

Query: 100 DQFIEDIGLEADHGRVWGEI--------ARSPLFHGK--DNKFSHDVFVSRLAR----EG 145
            Q  ++ G+      V   +           P    K  D   ++D +   L +      
Sbjct: 147 AQTAKESGIRVSDADVDRAVESVAQRNNLSVPQLKSKLKDAGMTYDKYRDDLRQEILLAR 206

Query: 146 INEKE-------YIDHYTKMLSRT---------------DVVGMFVGGMRPSNLLLDQAK 183
           + E+E       Y       L++                 ++     G   +     + K
Sbjct: 207 LREREVDSKVQVYDGEIDNYLAQQGGGTAPAGEQQYNVAQILVPVAEGATDAEKAAARKK 266

Query: 184 R---FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                       D+  L   +  A        L       +   R P     + +     
Sbjct: 267 AEGLLKQAQGGADFAKLARDNSGAQDAAQGGEL-----GLRPIGRLPAVFANAVVDMKAG 321

Query: 241 EKEKKIEISND--ELQAEYEKNK---EKYFSPEIRTVEQLVFPNQK--EADEAFQSLKK- 292
           +   ++  S     +    +K           +   V  ++        AD+A + L   
Sbjct: 322 QVASQVVESPAGYHVIKLLDKRAPGTAIAAKVQQTQVRHILIKTGPTMSADDARRQLVGL 381

Query: 293 ------GKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                 G  F   A    + G + +   LG  S   +       ++  L K GD +  + 
Sbjct: 382 RDRIVHGYDFGDAARRYSQDGSAGAGGELGWVSPGQLV-PEFEQAMNQL-KPGDVSQPVQ 439

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             FG  +  V   + +   S    +    + +R  K     ++  + L +
Sbjct: 440 SQFGVHLIQVEGRREAEV-SGDRQRDYARSVIREQKVQAAYEDWLRELRD 488



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 102/307 (33%), Gaps = 50/307 (16%)

Query: 138 VSRLAREGINEKEYIDHYT---------------KMLSRTDVVGMFVGGMRPSNLLLDQA 182
              L R  + E+ +                     +L R         G+R S+  +D+A
Sbjct: 106 RELLNRADLVERTFRAQNRPLPPRADLLGEVLEQLILERVQAQTAKESGIRVSDADVDRA 165

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
                +  ++    L ++   A            ++KY+D+ R      I        E 
Sbjct: 166 VESVAQRNNLSVPQLKSKLKDAGMT---------YDKYRDDLRQ----EILLARLREREV 212

Query: 243 EKKIEISNDELQAEYEKNKEKYF--SPEIRTVEQLVFPNQKEADE------------AFQ 288
           + K+++ + E+     +          +   V Q++ P  + A +              +
Sbjct: 213 DSKVQVYDGEIDNYLAQQGGGTAPAGEQQYNVAQILVPVAEGATDAEKAAARKKAEGLLK 272

Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
             + G  F +LA +   +        LG      +P V  A+++  +      + V+   
Sbjct: 273 QAQGGADFAKLARDNSGAQDAAQGGELGLRPIGRLPAV-FANAVVDMKAGQVASQVVESP 331

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKK-DIANQMRI---TKASEKVKEDYKRLEEFLALGTSM 401
            GY +  + + +   T    +V++  + + +     T +++  +     L + +  G   
Sbjct: 332 AGYHVIKLLDKRAPGTAIAAKVQQTQVRHILIKTGPTMSADDARRQLVGLRDRIVHGYDF 391

Query: 402 DEISRRE 408
            + +RR 
Sbjct: 392 GDAARRY 398


>gi|51594518|ref|YP_068709.1| peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis IP
           32953]
 gi|108806143|ref|YP_650059.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Antiqua]
 gi|108810256|ref|YP_646023.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Nepal516]
 gi|145600740|ref|YP_001164816.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Pestoides F]
 gi|153947180|ref|YP_001399170.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pseudotuberculosis
           IP 31758]
 gi|153997073|ref|ZP_02022206.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis CA88-4125]
 gi|162419617|ref|YP_001605102.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Angola]
 gi|165926365|ref|ZP_02222197.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939696|ref|ZP_02228239.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009691|ref|ZP_02230589.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213502|ref|ZP_02239537.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402058|ref|ZP_02307537.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421055|ref|ZP_02312808.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425941|ref|ZP_02317694.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468459|ref|ZP_02333163.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis FV-1]
 gi|218930874|ref|YP_002348749.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis CO92]
 gi|229837207|ref|ZP_04457372.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           Pestoides A]
 gi|229839569|ref|ZP_04459728.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229900131|ref|ZP_04515268.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229900422|ref|ZP_04515551.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           Nepal516]
 gi|270488780|ref|ZP_06205854.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
 gi|51587800|emb|CAH19402.1| peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis IP
           32953]
 gi|108773904|gb|ABG16423.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Nepal516]
 gi|108778056|gb|ABG12114.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Antiqua]
 gi|115349485|emb|CAL22459.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis CO92]
 gi|145212436|gb|ABP41843.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Pestoides F]
 gi|149289379|gb|EDM39457.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis CA88-4125]
 gi|152958675|gb|ABS46136.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pseudotuberculosis
           IP 31758]
 gi|162352432|gb|ABX86380.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Angola]
 gi|165912386|gb|EDR31020.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921889|gb|EDR39086.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991613|gb|EDR43914.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205175|gb|EDR49655.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961184|gb|EDR57205.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048532|gb|EDR59940.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055089|gb|EDR64888.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229682441|gb|EEO78528.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           Nepal516]
 gi|229686911|gb|EEO78990.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695935|gb|EEO85982.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229706150|gb|EEO92159.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           Pestoides A]
 gi|270337284|gb|EFA48061.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
 gi|320013526|gb|ADV97097.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 93

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++K+A++    L  G  F +LA++     S      LG F+K  +   +   ++F
Sbjct: 9   HILVDDEKQANDILAQLNNGANFQELAKKFSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L +       +   FGY I  V
Sbjct: 68  SCELLQP---YGPVKTQFGYHIIKV 89


>gi|123440559|ref|YP_001004553.1| peptidyl-prolyl cis-trans isomerase C [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|238750649|ref|ZP_04612148.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia rohdei ATCC
           43380]
 gi|238759819|ref|ZP_04620976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia aldovae
           ATCC 35236]
 gi|332159789|ref|YP_004296366.1| peptidyl-prolyl cis-trans isomerase C [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|122087520|emb|CAL10301.1| peptidyl-prolyl cis-trans isomerase C [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|238701962|gb|EEP94522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia aldovae
           ATCC 35236]
 gi|238711039|gb|EEQ03258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia rohdei ATCC
           43380]
 gi|318607672|emb|CBY29170.1| peptidyl-prolyl cis-trans isomerase ppiC [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664019|gb|ADZ40663.1| peptidyl-prolyl cis-trans isomerase C [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330859832|emb|CBX70164.1| peptidyl-prolyl cis-trans isomerase C [Yersinia enterocolitica
           W22703]
          Length = 93

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++K+A++    L  G  F +LA++     S      LG F+K  +   +   ++F
Sbjct: 9   HILVDDEKQANDILAQLNNGANFQELAKKFSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L +       +   FGY I  V
Sbjct: 68  SCELLQP---YGPVKTQFGYHIIKV 89


>gi|315924902|ref|ZP_07921119.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621801|gb|EFV01765.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 509

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 85/227 (37%), Gaps = 28/227 (12%)

Query: 195 IVLNNRHVPAIAD----------PSNAVLTQWFEKYK------DNYRAPEYKRISYILFD 238
           I +++  V A             P ++ L  + + Y         Y+  E K  +     
Sbjct: 258 IKISSDAVAAQQKLLNMTLKMYFPKDSTLDSYLQNYGMTAAIFRKYQKEEAKGRAAQAAI 317

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS---LKKGKK 295
                K +++SN +++  YE ++  Y  P+  +   ++  +   A +  +    +K    
Sbjct: 318 RSALAKDVKVSNQDVKEYYESHESTYN-PKTVSACHILTKDPVLAKKIAKEAKGIKTKAA 376

Query: 296 FIQLAEEQGKS-----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           F +L  +         L  + LG+F K      + + + F+ +K       +  + GY +
Sbjct: 377 FKKLMRKYSTKTNKKVLESMDLGAF-KSARMVPAFSKAAFNASKNTAV-GPVKTTNGYHV 434

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
             V +       S++  K  I   ++  ++ +  ++  K L++  A 
Sbjct: 435 IFVYDKTQKKD-SWKNHKAAITQSIQQNESKKAYQKQIKDLQDVKAD 480


>gi|323157883|gb|EFZ43986.1| chaperone surA [Escherichia coli EPECa14]
          Length = 356

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 94/317 (29%), Gaps = 75/317 (23%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 45  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V           
Sbjct: 97  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRN--------- 143

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
                                     V          +    ++  +   A     +S+I
Sbjct: 144 ------------------------NEVRRRITILPQEVESLAQQVGNQNDASTELNLSHI 179

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           L  + E     +++  E                             +A       + G  
Sbjct: 180 LIPLPENPTSDQVNEAE----------------------------SQARAIVDQARNGAD 211

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           F +LA         ++ G      I +   +     S AKKGD    I    G+ I  V+
Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271

Query: 355 NIK-PSFTVSFQEVKKD 370
           +++  S  +S  EV   
Sbjct: 272 DLRGESKNISVTEVHAR 288


>gi|308480673|ref|XP_003102543.1| hypothetical protein CRE_04023 [Caenorhabditis remanei]
 gi|308261275|gb|EFP05228.1| hypothetical protein CRE_04023 [Caenorhabditis remanei]
          Length = 119

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSF 315
           E+ K++        V  ++   Q +A EA + LK G KF ++A +  +    S   LG  
Sbjct: 14  EEPKKEAKGGTAVKVRHILCEKQGKALEAIEKLKAGMKFNEVASQYSEDKARSGGDLGWM 73

Query: 316 SKEYIPDVSLADSIFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
           ++  +      D+ F+L+     K     P +   FGY +  V   K
Sbjct: 74  TRGSMVGP-FQDAAFALSNSSCDKPIYTDPPVKTKFGYHVIMVEGKK 119


>gi|225686140|ref|YP_002734112.1| chaperone SurA [Brucella melitensis ATCC 23457]
 gi|254706164|ref|ZP_05167992.1| Chaperone surA precursor [Brucella pinnipedialis M163/99/10]
 gi|254711538|ref|ZP_05173349.1| Chaperone surA precursor [Brucella pinnipedialis B2/94]
 gi|256015078|ref|YP_003105087.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella microti CCM
           4915]
 gi|256029827|ref|ZP_05443441.1| Chaperone surA precursor [Brucella pinnipedialis M292/94/1]
 gi|256059473|ref|ZP_05449675.1| Chaperone surA precursor [Brucella neotomae 5K33]
 gi|256111792|ref|ZP_05452763.1| Chaperone surA precursor [Brucella melitensis bv. 3 str. Ether]
 gi|256157997|ref|ZP_05455915.1| Chaperone surA precursor [Brucella ceti M490/95/1]
 gi|256253044|ref|ZP_05458580.1| Chaperone surA precursor [Brucella ceti B1/94]
 gi|256262736|ref|ZP_05465268.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|261220140|ref|ZP_05934421.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94]
 gi|261313606|ref|ZP_05952803.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M163/99/10]
 gi|261319154|ref|ZP_05958351.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis B2/94]
 gi|261323445|ref|ZP_05962642.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae
           5K33]
 gi|265986843|ref|ZP_06099400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M292/94/1]
 gi|265993257|ref|ZP_06105814.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 3 str. Ether]
 gi|265996512|ref|ZP_06109069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M490/95/1]
 gi|225642245|gb|ACO02158.1| Chaperone surA precursor [Brucella melitensis ATCC 23457]
 gi|255997738|gb|ACU49425.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella microti CCM
           4915]
 gi|260918724|gb|EEX85377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94]
 gi|261298377|gb|EEY01874.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis B2/94]
 gi|261299425|gb|EEY02922.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae
           5K33]
 gi|261302632|gb|EEY06129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M163/99/10]
 gi|262550809|gb|EEZ06970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M490/95/1]
 gi|262764127|gb|EEZ10159.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 3 str. Ether]
 gi|263092541|gb|EEZ16776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|264659040|gb|EEZ29301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M292/94/1]
 gi|326410475|gb|ADZ67539.1| chaperone SurA [Brucella melitensis M28]
 gi|326553767|gb|ADZ88406.1| chaperone SurA [Brucella melitensis M5-90]
          Length = 311

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285
           E    + +   +  +      S DE Q  YE N+ ++ S  I     ++        E  
Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174

Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332
                     A   + +   F  +A E     S     +LG  ++          ++  +
Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                    I   FGY I  +        + F  V   IA
Sbjct: 234 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273


>gi|289811836|ref|ZP_06542465.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
          enterica subsp. enterica serovar Typhi str. AG3]
          Length = 91

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 1  MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
          M++ +R A+ + V KI  V++ V F++ G+S  L   S  +    V  Q++  + F N++
Sbjct: 1  MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59

Query: 61 KQELGMISQKIGFV---VNSERARSVGLDKKI 89
            E   + Q++G     + +       L +++
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQV 91


>gi|296273396|ref|YP_003656027.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097570|gb|ADG93520.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
           nitrofigilis DSM 7299]
          Length = 297

 Score = 74.6 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 6/166 (3%)

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
             F + +K +++  S+ EL+  Y   + KY +P    +  +V      A E  + L+  K
Sbjct: 126 FDFLLTQKAEQLLPSDKELEKYYNDRRYKYDTPAQIELLSIVVEKLSLAKEIIKKLQNAK 185

Query: 295 K----FIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGDFT-PVIHGSFGY 348
                F  LA++   + +  + G F K  +  ++     I    K+G FT   I   FGY
Sbjct: 186 DILQEFSILAKKYSLAPTAKNSGYFGKIPLSVLNSELSPILKDKKRGFFTNKPIKTEFGY 245

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            I ++ N  P +  +F+ VK  +  +              K L+E 
Sbjct: 246 EIFYILNDIPEYNSTFEGVKDKVKEEYVKKTVKTWAINKIKELKEK 291


>gi|226309691|ref|YP_002769585.1| foldase protein PrsA precursor [Brevibacillus brevis NBRC 100599]
 gi|226092639|dbj|BAH41081.1| putative foldase protein PrsA precursor [Brevibacillus brevis NBRC
           100599]
          Length = 355

 Score = 74.6 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 18/162 (11%)

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE--------AF 287
           L +      K  I +  L+  Y++  +   +  + +V  ++   +K   E          
Sbjct: 178 LINQSINVMKKNIDDATLKQTYDQMDKASRT--VASVRHILISTEKRTPEEALKISNDLE 235

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344
             LKKG+ F +LA E          G   +            ++  +  K G+  P +  
Sbjct: 236 ARLKKGEDFAKLATEFTDDPGSKQSGGLYENADVTQWVPEFKEASLT-QKVGEVGPPVKT 294

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +FGY I  V N K     +F E+K+ +     + KA +   +
Sbjct: 295 NFGYHIIKVENRKE---KTFDEMKEQLRAS-SLEKAYDTFAK 332


>gi|317053465|ref|YP_004119232.1| nitrogen fixation protein NifM [Pantoea sp. At-9b]
 gi|255761142|gb|ACU32741.1| nitrogen fixation cis-trans peptidyl prolyl isomerase [Pantoea sp.
           At-9b]
 gi|316953204|gb|ADU72676.1| nitrogen fixation protein NifM [Pantoea sp. At-9b]
          Length = 261

 Score = 74.6 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 86/240 (35%), Gaps = 24/240 (10%)

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA----VLTQWFEKYKDNYRAPEYK 230
           S   L +  R +   R ++Y V        I +   A     L+     +  ++ A E  
Sbjct: 26  SVSQLAEFNRLWQRQRQMEYAVAGATGEELIPETCLANMTTSLSPLLSTH--DFSAAERL 83

Query: 231 RI----SYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
            I    + +   +    ++  + +D ++ A Y +++ ++  PE R    L+    ++   
Sbjct: 84  SIIQHHTRMEIQLARVAEQAPVPDDLQVLAWYRRHQGQFMRPEQRLCWHLLLTTDQDGPA 143

Query: 286 AFQSLK--------KGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
             + ++          + F  LA+       +L    +G   +  +    L + +F++ K
Sbjct: 144 VHRQMQQLRLQITNNRQAFSSLAQRWSHCPSALEGGRMGWIGRGLLY-PELEEVLFAM-K 201

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
               +  I    G+ +     I+P   +  +     + + +      +  ++  K+L E 
Sbjct: 202 PNAVSQPIATQLGWHLLWCEMIRPPAPMEQEAALTRVRSLLTRQNQQQWQRQWLKQLLEK 261


>gi|237809084|ref|YP_002893524.1| nitrogen fixation protein NifM [Tolumonas auensis DSM 9187]
 gi|237501345|gb|ACQ93938.1| nitrogen fixation protein NifM [Tolumonas auensis DSM 9187]
          Length = 279

 Score = 74.6 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 87/254 (34%), Gaps = 39/254 (15%)

Query: 171 GMRPSNLLLDQAKRF--YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
           G  P++L  D+  +     E++      + +    A      A L    ++ K  Y   E
Sbjct: 18  GKTPADLSADEQIQLEKMLEHQLAMEARILDYAAQAGISVQAADLNAALDEVKKAYADEE 77

Query: 229 YKRISYILFDVH---------------EKEKKI-----EISNDELQAEYEKNKEKYFSPE 268
             ++S     +                +   K+      ++ +  +A Y  +  ++  PE
Sbjct: 78  VWKVSMAAVKLDLPSLKEALRRELLVSQVMDKVVENIKPLTQEAAKAWYLDHPRQFLQPE 137

Query: 269 IRTVEQLVFPNQKEADEAFQS-------------LKKGKKFIQLAEEQGKSLSDISLG-- 313
            R    ++        + ++              ++   KF  LA    +  + ++ G  
Sbjct: 138 RRMARHILITIDDANPDNYEETSYARLLDIRGQLIQSPGKFAALAMRYSECPTAVNEGKI 197

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
              K  +    L  ++F L ++G F+ ++    G+ +     I P+  +   E    I  
Sbjct: 198 GLVKAGLLYPELDAALFQLPERG-FSNILRSPMGFHLLWCEKIHPAVPMPLDEAVPKIIA 256

Query: 374 QMRITKASEKVKED 387
             ++  A +K+++ 
Sbjct: 257 A-QLDHAKKKLQKQ 269


>gi|237508070|ref|ZP_04520785.1| peptidylprolyl isomerase [Burkholderia pseudomallei MSHR346]
 gi|235000275|gb|EEP49699.1| peptidylprolyl isomerase [Burkholderia pseudomallei MSHR346]
          Length = 240

 Score = 74.6 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +    + +  D++ A Y + K K  + E   +  L  P + +A      L +G  F +L
Sbjct: 85  DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 143

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A       S      +G  ++  + DV+  + I ++ K G F+  I GS GY + +V + 
Sbjct: 144 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 201

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     S  ++++ +    R+ K    + E    +
Sbjct: 202 RDIVAPSLDQIREQLIELARVDKFERHLCELRSAV 236


>gi|61228635|sp|P0A3Y9|NIFM_KLEPN RecName: Full=Protein nifM
 gi|61228636|sp|P0A3Z0|NIFM_KLEOX RecName: Full=Protein nifM
 gi|43835|emb|CAA31679.1| unnamed protein product [Klebsiella pneumoniae]
 gi|43886|emb|CAA29313.1| nifM (AA 1-266) [Klebsiella pneumoniae]
 gi|149250|gb|AAA25105.1| nifM [Klebsiella pneumoniae]
 gi|225920|prf||1403297C nifM gene
          Length = 266

 Score = 74.6 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 83/247 (33%), Gaps = 31/247 (12%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV---LNNRHV 202
           +N  +         SR +     +             ++ + E   V  +    +    +
Sbjct: 1   MNPWQRFARQRLARSRWNRDPAALDPADTPAFEQAWQRQCHMEQTIVARVPEGDIPAALL 60

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRI----SYILFDVHEKEKKIEISN-DELQAEY 257
             IA    A L  W ++   ++  PE   I    + +     +  ++    +   +QA Y
Sbjct: 61  ENIA----ASLAIWLDE--GDFAPPERAAIVRHHARLELAFADIARQAPQPDLSTVQAWY 114

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL--------KKGKKFIQLAEEQG---KS 306
            +++ ++  PE R    L+     + +   Q +             F  LA+       +
Sbjct: 115 LRHQTQFMRPEQRLTRHLLLTVDNDREAVHQRILGLYRQINASRDAFAPLAQRHSHCPSA 174

Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF----TV 362
           L +  LG  S+  +    L  ++FSLA+    +  I    G+ +     I+P+       
Sbjct: 175 LEEGRLGWISRGLLY-PQLETALFSLAEN-ALSLPIASELGWHLLWCEAIRPAAPMEPQQ 232

Query: 363 SFQEVKK 369
           + +  + 
Sbjct: 233 ALESARD 239


>gi|307297459|ref|ZP_07577265.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916719|gb|EFN47101.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 546

 Score = 74.6 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/366 (12%), Positives = 92/366 (25%), Gaps = 98/366 (26%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK---- 70
           K  L++L   F +  +                    +       ++   +   + +    
Sbjct: 3   KFLLILLAAFFSLTLIGAEYAVRITKGGEAVSNEFWITREEIEQAFSATVANAASQGIIL 62

Query: 71  ---IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
                           GL   I+  +V    +D F  +  L      +  E         
Sbjct: 63  DPYFDSYFTPSEL---GLKTMIIPYIVDEKLIDYFAWESNLIPSEEEIDAETDSM----- 114

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
                  +++ S       +                 +    G M            F  
Sbjct: 115 ------MEMYTS-------SPDMVEQ-----------IEAIYGSM----------DAFRS 140

Query: 188 ENRSVDYIVLNNRHVPAIADP-SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
           E R+     L    V     P ++  L  +FE++K                         
Sbjct: 141 EIRNYVSDALKAELVQESVAPLNDDALAAYFEEFKT------------------------ 176

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAE---- 301
                E++ ++          E      ++   +  A E    +  G+  F + A     
Sbjct: 177 -----EIKNQF----------ETIRARHILVTEEATATELMDRINSGEITFAEAALQFSI 221

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           +   + +   LGS  +         ++I + A  G+    +   FGY +  V        
Sbjct: 222 DSSTAANGGELGSIVRGQTV-PEFEEAILA-APIGELYGPVQSEFGYHLIIVEERNEIN- 278

Query: 362 VSFQEV 367
            S ++V
Sbjct: 279 -SLEDV 283


>gi|291613281|ref|YP_003523438.1| nitrogen fixation protein NifM [Sideroxydans lithotrophicus ES-1]
 gi|291583393|gb|ADE11051.1| nitrogen fixation protein NifM [Sideroxydans lithotrophicus ES-1]
          Length = 282

 Score = 74.6 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 63/176 (35%), Gaps = 18/176 (10%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277
            ++ A   + +           +   +S  ++   Y+ + E++  PE R    ++     
Sbjct: 95  ASFAAALERELKVDAIMEKVGTRAEGVSEMDVDLYYQYHPEQFRRPETRLARHILITINE 154

Query: 278 ----PNQKEADE----AFQSLKK-GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSL 325
                 + EA +        L K  ++F + A +      +L    LG   +  +    L
Sbjct: 155 SIAENTRAEAGKRIAVIQARLAKEPQRFEEQALKHSECPTALDGGKLGDLPRGKLF-PEL 213

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
             ++F L K G+ + V+    G+ +     I  +  + + + K+ I   +   +  
Sbjct: 214 DKALFEL-KAGEVSGVLESELGFHVLRCDAITEANVLGYDQAKQHIRKLLEQKRKR 268


>gi|332283513|ref|YP_004415424.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pusillimonas sp.
           T7-7]
 gi|330427466|gb|AEC18800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pusillimonas sp.
           T7-7]
          Length = 340

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 14/181 (7%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E + +     +   +      S +ELQA YE NK ++ +P    V Q+      +  EA 
Sbjct: 142 ERQVVLQTYLESVSQVPAAYPSQEELQAAYEANKAQFTTPAQYRVSQIFLVAPYQDAEAV 201

Query: 288 QSLKK------------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLA 333
             ++K               F  L +E  +  +  + G  +        + +  +  +  
Sbjct: 202 AKMRKQAGELVKKARADKADFAALVKEHSQDEATAARGGDTGWAPLQQLVPEIRTSVAAL 261

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            KG  +  I    G+ I  + + +   T    +V++ +   +R  + S   K   + L +
Sbjct: 262 DKGAVSEPIQSQAGFHILKLVDQRAPVTPELAQVQEQLREALRRQRKSTVAKAYLEGLVD 321

Query: 394 F 394
            
Sbjct: 322 A 322


>gi|282856786|ref|ZP_06266047.1| hypothetical protein HMPREF7215_0584 [Pyramidobacter piscolens
           W5455]
 gi|282585409|gb|EFB90716.1| hypothetical protein HMPREF7215_0584 [Pyramidobacter piscolens
           W5455]
          Length = 368

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/400 (11%), Positives = 117/400 (29%), Gaps = 91/400 (22%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIW----GLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
           L  +R   + W+  +F+V+            G SD+    +G   V  V  +++  S   
Sbjct: 4   LTALRTQIK-WILALFIVIFTASVGFMYGTGGSSDSDNQRTGDFVVAKVNGEELRISQL- 61

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
              ++ L    ++ G    S++ +   + K + D +VS   +   +  + + A    V  
Sbjct: 62  ---QEHLRSFVERNGIRDLSDK-QMPLIYKAVFDEMVSNRAVIDEVARLKISAPADDVDR 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           ++        ++   + + F+  L  +G + ++      + L+   ++    GG+     
Sbjct: 118 QLKEV-----ENQYVTKEAFMQTLKNQGSSLEQVKAEIARQLAINKMLEDVSGGVV---- 168

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
                                          S+  +   ++  + N+  P      ++  
Sbjct: 169 ------------------------------VSDDEIKTLYDALRGNFTLPAGIEADFVQL 198

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                                                    +++ AD+  + +K  K + 
Sbjct: 199 ----------------------------------------KSKEAADKFAEEVKADKDWD 218

Query: 298 QLAEEQGKSLSDISLGSF-SKEYIPDVSLADSIFSLAKKGDFTPVIH-GSFGYVIAHVSN 355
           +        +   +      +    ++       S    G+ +  I   S  Y + H   
Sbjct: 219 KALTIVSADVVQATSNDVHERIAAMEMVGKLEPISALNDGEISAPIEITSQDYFVVHRIK 278

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
                     EV   I   +  +K  E  +   K L + +
Sbjct: 279 AVSEDVRPLSEVSDGIKTMLLQSKKVEAQRNYIKGLTDKM 318


>gi|24375136|ref|NP_719179.1| survival protein surA [Shewanella oneidensis MR-1]
 gi|81744686|sp|Q8EB95|SURA_SHEON RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|24349906|gb|AAN56623.1|AE015799_10 survival protein surA [Shewanella oneidensis MR-1]
          Length = 434

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/383 (13%), Positives = 121/383 (31%), Gaps = 73/383 (19%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
              N        L  ++++ L+      Q  + IGL     ++   I           K 
Sbjct: 56  KAANQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KM 111

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN-- 189
           +      ++A EGI+  +Y +   + ++  ++        ++ S   +    +   E   
Sbjct: 112 TVAQMQQKIASEGISFSQYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGM 171

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQ---WFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
           + V+Y  + +  +    +P++  L           +  ++ E  R + I      K  + 
Sbjct: 172 KDVEY-QIGHILIDVPNNPTSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEG 230

Query: 247 EISN----DELQAEYEK--------------------------NKEKYFSPEIRTV--EQ 274
            I +    +E+   + +                          +     + EI  V    
Sbjct: 231 GIWDYMNINEMPTLFAEVINGAKKGDIIGPIKTGAGFHIIKIMDARGLQTKEIEEVRARH 290

Query: 275 LVFP-----NQKEADEAFQ----SLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321
           ++       ++  A    +     ++ G+ KF  LA +  +     + G    +++  I 
Sbjct: 291 ILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSATKGGELGWAEPSIY 350

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
               A ++ SL+     +     + G+ I  +   +          K D  +Q    +A 
Sbjct: 351 VPEFAQTLNSLS-PDQISEPFRTTHGWHITQLEERR----------KTDATDQFNTNRAH 399

Query: 382 EKV------KEDYKRLEEFLALG 398
           + +      +E    L+E  A  
Sbjct: 400 QLIFRRKFNEELQNWLDEMRADA 422



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 106/303 (34%), Gaps = 31/303 (10%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             +L+R  +      G+   +L LDQA       + +    +  +        S      
Sbjct: 75  RLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQKMTVAQMQQKIASEGISFS------ 128

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
                   YR    + I+       + +++I++S  E+    +  +E+        +  +
Sbjct: 129 -------QYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGMKDVEYQIGHI 181

Query: 276 VF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322
           +              + K A+   + LK G+ F + A         +  G +    I + 
Sbjct: 182 LIDVPNNPTSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINEM 241

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKAS 381
            +L   + + AKKGD    I    G+ I  + + +   T   +EV+   I  +     + 
Sbjct: 242 PTLFAEVINGAKKGDIIGPIKTGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILSE 301

Query: 382 EKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
           ++ K   ++ L++  +     ++++R+    S D       G+    +    +P   Q L
Sbjct: 302 DRAKAMLEQFLKQIRSGEAKFEDLARQY---SEDPGSATKGGELGWAEPSIYVPEFAQTL 358

Query: 441 FRV 443
             +
Sbjct: 359 NSL 361


>gi|302876603|ref|YP_003845236.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
 gi|307687277|ref|ZP_07629723.1| peptidylprolyl isomerase [Clostridium cellulovorans 743B]
 gi|302579460|gb|ADL53472.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
          Length = 342

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 7/211 (3%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           K+ +  V    +  + V     G  +   +      V  VG +K+         K  +  
Sbjct: 2   KSIKKLVTAALIGAMVVGATGCGFLEKTETNKAKEVVAKVGDEKITKGDVDEEIKYMIEQ 61

Query: 67  ISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS- 122
              + G    S      G++++    L  LV    L Q+++D  +E +   +  E+  + 
Sbjct: 62  AKTQYGEDYASNEEAMKGINEQRKTTLSALVDLKLLLQYVKDNNIEINEDEMEAEVDNAY 121

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
                +        F   L   G   ++Y D        +        G   ++  +D +
Sbjct: 122 KQARDQYGSGDDATFEKLLQDNGYTLEKYKDDIKNAYISSKAREAMSKGAEVTDADIDAS 181

Query: 183 KR---FYFENRSVDYIVLNNRHVPAIADPSN 210
            +   F  +N +  ++      V + A P +
Sbjct: 182 FKKDEFLTQNANAKFVQYLLCKVESSATPED 212



 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 85/234 (36%), Gaps = 31/234 (13%)

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            ++      ++     Y   ++     +   +   L ++ +  K+ Y + + +       
Sbjct: 112 EMEAEVDNAYKQARDQYGSGDDATFEKLLQDNGYTLEKYKDDIKNAYISSKAR------- 164

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DE 285
                 K  E+++ ++ A ++K++    +   + V+ L+   +  A            D 
Sbjct: 165 --EAMSKGAEVTDADIDASFKKDEFLTQNANAKFVQYLLCKVESSATPEDRAAKKKIADA 222

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           A   +K G  F   A++     S       LG+ + E        +    L   G  + V
Sbjct: 223 ALAEIKGGLSFTDAAKKYSDDPSTKDNGGYLGAVTSESGLVEGFKNVAIGL-NPGQMSEV 281

Query: 342 IHGS-FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +    FG+ I    +I     ++F+  K+     +  TK SEK +E  ++L + 
Sbjct: 282 VDEPTFGFFIIK--SISTDEAIAFE--KEKQKTTLLQTKQSEKAEEILQQLRDE 331


>gi|254695417|ref|ZP_05157245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           3 str. Tulya]
 gi|261215795|ref|ZP_05930076.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           3 str. Tulya]
 gi|260917402|gb|EEX84263.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           3 str. Tulya]
          Length = 311

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285
           E    + +   +  +      S DE Q  YE N+ ++ S  I     ++        E  
Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174

Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332
                     A   + +   F  +A E     S     +LG  ++          ++  +
Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                    I   FGY I  +        + F  V   IA
Sbjct: 234 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273


>gi|239995310|ref|ZP_04715834.1| peptidyl-prolyl cis-trans isomerase C [Alteromonas macleodii ATCC
           27126]
 gi|332143295|ref|YP_004429033.1| peptidyl-prolyl cis-trans isomerase C [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553317|gb|AEB00036.1| peptidyl-prolyl cis-trans isomerase C [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 93

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +KEA    + LKKGK F  LA+   K  S      LG F +  +   +  D +F
Sbjct: 8   HILVKTEKEALSILEQLKKGKDFATLAKRHSKCPSGKRGGDLGEFRRGQMVK-AFDDVVF 66

Query: 331 SLAKKGDFT--PVIHGSFGYVIAH 352
              KK        +   FGY +  
Sbjct: 67  ---KKDVLKVHGPVKTRFGYHLIK 87


>gi|56461511|ref|YP_156792.1| parvulin-like peptidyl-prolyl isomerase [Idiomarina loihiensis
           L2TR]
 gi|56180521|gb|AAV83243.1| Parvulin-like peptidyl-prolyl isomerase [Idiomarina loihiensis
           L2TR]
          Length = 92

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
                  ++   + EA++  + L KG KF +LA +     S      LG FS+  +   +
Sbjct: 2   ARAHALHILVETKDEAEKLKEQLTKGAKFAELARKHSLCPSGKKGGDLGEFSRGQMV-PA 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAH 352
               +F      +    +   FG+ +  
Sbjct: 61  FDKVVFGKPTL-EVHGPVKTQFGWHLIK 87


>gi|39934430|ref|NP_946706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris CGA009]
 gi|39648279|emb|CAE26799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris CGA009]
          Length = 347

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 17/177 (9%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--------- 278
           E   +   L  V    +K   S+++LQ  YE N+  +  P    + Q+  P         
Sbjct: 150 ESAAVELYLQSVSTPPEKFP-SDEDLQKVYEANRAAFAMPRQFELAQIYVPLSRDADKAA 208

Query: 279 ---NQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
               +K  D+  + LK  G  F  +A E G   +  +LG   +  I    +   +  LAK
Sbjct: 209 EDAARKSVDDIQRKLKAPGADFSAIASEAG-DANAGALGWVVENQI-RPEIRTKVMELAK 266

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
               +  I    G+    V + K  +T +  EV+  +  Q+R  +++   +     L
Sbjct: 267 N-AISEPIKLDDGWHFIKVLDTKAPYTRTLPEVRDGLVQQIRSERSAALRRAYLAEL 322


>gi|254444073|ref|ZP_05057549.1| PPIC-type PPIASE domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198258381|gb|EDY82689.1| PPIC-type PPIASE domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 326

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 72/179 (40%), Gaps = 16/179 (8%)

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----- 279
              E   ++Y+   + +      +S   ++  Y++ K+++F  E   +  +         
Sbjct: 142 MIKEEIIVNYMRSKMRKSAS--VVSPVRIEKFYDEYKQEFFQEEAIHLRLIRLTKLADES 199

Query: 280 ----QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSL 332
               ++ ADE ++ L+ G  F +LA +             G  +K  + +  L+   F++
Sbjct: 200 DDVLKQTADEIYEKLELGFAFDELASKYSNDAKAKKGGDWGWVTKGSLIE-ELSTPAFAM 258

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            + GD++  I       I +    +P   +   +V++DI + +    A E   +  +RL
Sbjct: 259 TE-GDYSEPITIKNNLFILYCEEHRPEGYMPLPDVREDIEDILISQMAREAEAKFLERL 316



 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 9/136 (6%)

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
           I       ++ + +K+    + E L LG + DE++ +              G   KG  +
Sbjct: 190 IRLTKLADESDDVLKQTADEIYEKLELGFAFDELASKYS-NDAKAKKGGDWGWVTKGSLI 248

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                 E+L    F   +       + + +  ++    +E  P     L +V  D++   
Sbjct: 249 ------EELSTPAFAMTEG-DYSEPITIKNNLFILY-CEEHRPEGYMPLPDVREDIEDIL 300

Query: 491 KTVKTAEEVSSKANQL 506
            +    E  +    +L
Sbjct: 301 ISQMAREAEAKFLERL 316


>gi|262370367|ref|ZP_06063693.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
 gi|262314709|gb|EEY95750.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
          Length = 439

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/401 (11%), Positives = 119/401 (29%), Gaps = 63/401 (15%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
           F  +    V  V    +  S    S  +    +  +    V  E+     L ++ L+ L+
Sbjct: 31  FVHASDEVVAVVDNSVILKSDLEASMTELKHQLESQ-KKQVPPEQ----YLAQQALEQLI 85

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL-AREGINEKEYID 153
              T  + ++   ++ D   +   +        +    S + F  +L             
Sbjct: 86  IRQTQLEQVKRYNIQPDEKSLNEAVLNVA---KQSGSTSLEAFQQKLDKMAPGTYASLRS 142

Query: 154 HYTKMLSRTDVVGMFVGG-MRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPAIA 206
              + L+   +    V   ++ S+  +       Q +        V ++ ++  +   +A
Sbjct: 143 RVAEDLAINRLRQQIVTSRIQISDQDVKNFLNTPQGQAALGNQVHVLHVRVSGDNADTVA 202

Query: 207 D------PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE-- 258
                   ++  +    +K+       E   + +        E    +S  ++    +  
Sbjct: 203 KQVKTVLANDNDVAAIAKKFSTAGTKVEGADMGFRALSDIPSELAARVSPLQVGQITDLI 262

Query: 259 --------------KNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKK 295
                         K  E+           ++            ++  +  +  ++KG+ 
Sbjct: 263 TVRDGVHLLKLVERKGAEQKAIVPQYKARHILIQPSEVVSPENAKQMIESLYNRVQKGED 322

Query: 296 FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F  LA     + G +    SLG  S   +      +++ +    G  +      FG+ I 
Sbjct: 323 FAVLASTYSNDTGSARDGGSLGWVSPGVMV-PQFEETMKN-TPVGQTSKPFQTQFGWHIL 380

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            V+  +          ++D+  + +   A + + E     E
Sbjct: 381 QVTETR----------QQDMTAEYQERMARQILGERQFDAE 411


>gi|293606739|ref|ZP_06689092.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
 gi|292814889|gb|EFF74017.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
          Length = 352

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 79/273 (28%), Gaps = 32/273 (11%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
             +L                 L+   ++             + +A +   E   V   + 
Sbjct: 95  RQQLQDNR---AGMEQWLRARLAEKALIEQARAQGWQDQPEIRRAVQAAEERIVVQSYLE 151

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
           +    P    P++A L   +E+ K     P    +S I       +              
Sbjct: 152 SVSRAPDGY-PTDADLQAAYERAKPQLAVPAQYHVSQIFLPAPLGDADA----------- 199

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
                       R     +    +     F +L +     + +  QG  +  + L   + 
Sbjct: 200 --------VAATRKQALELTKRAQAPKADFAALAQAHSRDETSRAQGGDIGFVPLAQLTP 251

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
           E  P       +    K G+ +  +  + G+ I  ++ ++P+    F++V   +   +R 
Sbjct: 252 EMRP-------VIEQMKAGEVSAPVQSAAGFHILKLTALRPASVTPFEQVSPQLRTALRS 304

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
            +     +   + L    A   ++D  +    +
Sbjct: 305 QRQELAARAYMEGLLN--AGTVTIDGAALNAAL 335


>gi|62317782|ref|YP_223635.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 1 str.
           9-941]
 gi|83269763|ref|YP_419054.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           biovar Abortus 2308]
 gi|189023035|ref|YP_001932776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           S19]
 gi|237817322|ref|ZP_04596314.1| Chaperone surA precursor [Brucella abortus str. 2308 A]
 gi|254699074|ref|ZP_05160902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           2 str. 86/8/59]
 gi|254732517|ref|ZP_05191095.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           4 str. 292]
 gi|260545017|ref|ZP_05820838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           NCTC 8038]
 gi|260760321|ref|ZP_05872669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           4 str. 292]
 gi|260763561|ref|ZP_05875893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           2 str. 86/8/59]
 gi|62197975|gb|AAX76274.1| hypothetical peptidyl-prolyl cis-trans isomerase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82940037|emb|CAJ13074.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           biovar Abortus 2308]
 gi|189021609|gb|ACD74330.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           S19]
 gi|237788135|gb|EEP62351.1| Chaperone surA precursor [Brucella abortus str. 2308 A]
 gi|260098288|gb|EEW82162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           NCTC 8038]
 gi|260670639|gb|EEX57579.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           4 str. 292]
 gi|260673982|gb|EEX60803.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           2 str. 86/8/59]
          Length = 311

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285
           E    + +   +  +      S DE Q  YE N+ ++ S  I     ++        E  
Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174

Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332
                     A   + +   F  +A E     S     +LG  ++          ++  +
Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                    I   FGY I  +        + F  V   IA
Sbjct: 234 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273


>gi|261209784|ref|ZP_05924089.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC341]
 gi|260841174|gb|EEX67687.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC341]
          Length = 431

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 64/379 (16%), Positives = 123/379 (32%), Gaps = 90/379 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    +  S    + K       Q           +   L +++L+ L+     
Sbjct: 28  DGVAVIVNSGVILQSDVDGALKTVKANAKQN-----KQPLPQESVLREQVLEKLIIDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG++ D  R+   I        K+N+ + +  ++ +A+EG+   E+        
Sbjct: 83  QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  V          + L+  +      E  ++  ++         A  ++A +      
Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      +IS+I   V E + K E                                
Sbjct: 176 ----------YKISHIQLRVEEGQDKSE-------------------------------A 194

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +  A++    LK G  F Q+A    K   +L     G   KE +P    AD I  +  KG
Sbjct: 195 ESLANKLVGELKHGADFAQMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389
                     G+ I  + +++   TV+  EV       K  I   +    A +++ E  +
Sbjct: 253 SIIGPFRSGVGFHILKIDDVRGLETVAVTEVNARHILIKPTII--LSDDGAQKQLSEFVQ 310

Query: 390 RLEEFLALGTSMDEISRRE 408
           R++       S  E++++ 
Sbjct: 311 RIKN---GEVSFGELAQQY 326


>gi|302039583|ref|YP_003799905.1| putative peptidylprolyl isomerase, PpiC-type [Candidatus Nitrospira
           defluvii]
 gi|300607647|emb|CBK43980.1| putative Peptidylprolyl isomerase, PpiC-type [Candidatus Nitrospira
           defluvii]
          Length = 304

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 6/159 (3%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                 + K+E+S +EL A   K+  +  +     V  ++ PN   A +  + ++ G  F
Sbjct: 126 LLKDRIKTKVEVSKEELDAYLGKHANQLLANPKVQVSIMLLPNVYAAKDLKRQVEAGGNF 185

Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            + A               LG + K  +      D++      G  +  I  + GY +  
Sbjct: 186 TRFALRYSIDERSRAKGGDLGPYKKGLL--EPEVDALIPSLHPGVISDPIKTAQGYYLVK 243

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           VS ++P    + Q  ++ +  ++   K  +++ + +  L
Sbjct: 244 VSPLEPEILQADQATRERLRQELLAEKRRKRLDDVFAEL 282



 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 9/74 (12%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  +  + +  S F   W+        +             G  ++ LD L+    L
Sbjct: 45  EPVIAMINGRSITQSEFDIRWEDLSQATRARY---------EKEGGKRRFLDELIMRELL 95

Query: 100 DQFIEDIGLEADHG 113
            Q     GL+    
Sbjct: 96  MQEARKQGLDQSDE 109


>gi|270264226|ref|ZP_06192493.1| hypothetical protein SOD_g01590 [Serratia odorifera 4Rx13]
 gi|270041875|gb|EFA14972.1| hypothetical protein SOD_g01590 [Serratia odorifera 4Rx13]
          Length = 93

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  N+K A++    LK+G  F  LA +     S     +LG F+K  +   +   ++F
Sbjct: 9   HILVDNEKLANDLLAKLKRGVSFDTLARKYSSCPSKRNGGALGEFNKGTMV-AAFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L K       +   FGY I  V
Sbjct: 68  SIPLLKP---YGPVKTQFGYHIIKV 89


>gi|325283666|ref|YP_004256207.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           proteolyticus MRP]
 gi|324315475|gb|ADY26590.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           proteolyticus MRP]
          Length = 349

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 9/137 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            E   +   S+  +++ Y  N+  +   E      ++  ++ +A +   +L  G  F  L
Sbjct: 170 SELRTRFTFSDAAVESYYALNRHSFVQREEACARHILVTSEVQARDLRVALLAGADFALL 229

Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIF--SLAKKGDFTPVIHGSFGYVIAHVS 354
           A  Q +     S G       P     +   ++F  +L        V+    G+ +  V+
Sbjct: 230 ARSQSRDPGSASRGGELGCLAPGETVAAFEATLFGAALGTP----QVVQTDHGWHVVEVT 285

Query: 355 NIKPSFTVSFQEVKKDI 371
               +  +  ++    +
Sbjct: 286 ERHAAGVIPPEQAAPQV 302


>gi|209519024|ref|ZP_03267832.1| SurA domain protein [Burkholderia sp. H160]
 gi|209500536|gb|EEA00584.1| SurA domain protein [Burkholderia sp. H160]
          Length = 478

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/339 (12%), Positives = 89/339 (26%), Gaps = 80/339 (23%)

Query: 31  SDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD 86
           + AL    G  TV      V    +               ++Q+   V   ++     L 
Sbjct: 53  AQALGGNGGGQTVDTIAAVVNNGVITQRELDERAGLIAHRLNQQNAPVPPMDQ-----LR 107

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
           +++L  +V      Q  ++ G+  D   V   +                          +
Sbjct: 108 QQVLTQMVLERIQLQKAKEDGITIDDTAVERTL------------------ERLAQANNM 149

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
               Y                   G+  +    D                L  + V +  
Sbjct: 150 TLAMYRARIEAQ------------GVPWTTFTNDARTELTLSR-------LREKEVDSKI 190

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
             ++A +  +        R P   + + +       +  +     +++A           
Sbjct: 191 TVTDAEVANYIASQ----RGPGAGQTNDLHMQHIFVKAPLNAPETDIEA----------- 235

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPD 322
                        QK+A+      K G  F +LA+   ++         LG  +   +P 
Sbjct: 236 ------------AQKKAEGLLAEAKGGADFEKLAKNNSQAPDASKNGGDLGFLAPSKLP- 282

Query: 323 VSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSF 360
                +   L + G+  P +I  + G+ I  +   +   
Sbjct: 283 PEFVKAASGL-RPGEINPDLIRTNDGFEIVRLVERRAGQ 320


>gi|134282592|ref|ZP_01769296.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           305]
 gi|134246149|gb|EBA46239.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           305]
          Length = 240

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +    + +  D++ A Y + K K  + E   +  L  P + +A      L +G  F +L
Sbjct: 85  DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 143

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A       S      +G  ++  + DV+  + I ++ K G F+  I GS GY + +V + 
Sbjct: 144 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 201

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     S  ++++ +    R+ K    + E    +
Sbjct: 202 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 236


>gi|227904499|ref|ZP_04022304.1| peptidylprolyl isomerase [Lactobacillus acidophilus ATCC 4796]
 gi|227867754|gb|EEJ75175.1| peptidylprolyl isomerase [Lactobacillus acidophilus ATCC 4796]
          Length = 306

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 79/238 (33%), Gaps = 28/238 (11%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +++              + L +       E +   Y              S+  + + + 
Sbjct: 47  ITQQQYYDEMKKSQAGKSTLANMIINRALEQQYGKY-------------VSSKKVDKQYN 93

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSP-----EIR 270
            YK  Y +     +          ++ ++   +S   L+   +  K++            
Sbjct: 94  NYKKQYGSQFSAVLQQNGMTASSFKENLKTNLLSEQALKHIKKITKKQEQQAWKSYQPKV 153

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-----GSFSKEYIPDVSL 325
           TV+ ++   +  A +  + LK GK F  LA++     +  +         S +   D + 
Sbjct: 154 TVQHILVAKKSTAQDIIKQLKDGKSFSSLAKKYSLDTATKNKAGKLPSFDSTDNTLDSAF 213

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             + F L      +  +    GY +  + N  P+    F + KK I +++  + A ++
Sbjct: 214 KTAAFKLKTGEVTSTPVKSQSGYHVIKMIN-HPAKGK-FADHKKAIDDEIYASMAQDQ 269



 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 69/233 (29%), Gaps = 40/233 (17%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           +   +STV S    K+    +                     +  +     K  L N++ 
Sbjct: 32  NSGSNSTVASYKGGKITQQQYY--------------------DEMKKSQAGKSTLANMII 71

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L+Q     G      +V     +   +  +        F + L + G+    + ++ 
Sbjct: 72  NRALEQQ---YGKYVSSKKVDK---QYNNYKKQYGS----QFSAVLQQNGMTASSFKENL 121

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
              L     +       + +     QA + Y    +V +I++  +        +   + +
Sbjct: 122 KTNLLSEQALKHIK---KITKKQEQQAWKSYQPKVTVQHILVAKKS-------TAQDIIK 171

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
             +  K      +   +     +   K    + +++ L + ++    K  + E
Sbjct: 172 QLKDGKSFSSLAKKYSLDTATKNKAGKLPSFDSTDNTLDSAFKTAAFKLKTGE 224


>gi|254507748|ref|ZP_05119879.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16]
 gi|219549273|gb|EED26267.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16]
          Length = 181

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 67/185 (36%), Gaps = 17/185 (9%)

Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
           Q +     K+D L+    + +     + V++++        L++V   V      +K  +
Sbjct: 3   QAILSPEVKEDGLN-SEVIEVAPEHVIVVRVEDYRDEMVLPLDDVREQVVATLSKIKGEQ 61

Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
              + A++LV E  KEGK  +++    G +      ++R               +F+ P 
Sbjct: 62  NAIALADKLVAEL-KEGK--QELLNENGLAFNDVQAVDR--------SAPMADVIFAMPK 110

Query: 558 EMVKCFPIEN----GLSYVVFKVTNSKVG-PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
                           +  V K++N       Q   +  + LTQM  +  L  +I+ L+ 
Sbjct: 111 PSEGKVEYAQAKELNGNIAVVKLSNVSDEFDAQYNAQISNQLTQMNAQLDLTGLISVLRK 170

Query: 613 QYSVT 617
              + 
Sbjct: 171 TTDIE 175


>gi|238020925|ref|ZP_04601351.1| hypothetical protein GCWU000324_00822 [Kingella oralis ATCC 51147]
 gi|237867905|gb|EEP68911.1| hypothetical protein GCWU000324_00822 [Kingella oralis ATCC 51147]
          Length = 290

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 89/244 (36%), Gaps = 17/244 (6%)

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR---------HVPAIADPSNAVLTQ 215
           V   V G +       + ++F  +   ++ +V                     S      
Sbjct: 41  VQAVVAGSQGQVQDSPELRQFIAQQTVLETVVTQAAKKQGLDKSKEYKDAESESMKQAKA 100

Query: 216 WFEKYKDNYRAP--EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
                + +++    +Y+    +     +   K  +++ ++Q  Y + K++Y + +   + 
Sbjct: 101 QGADKQADFKQQWADYQNQLLMQVYARDVINKNPVTDAQVQQRYNEIKQRYDNTDEVQIG 160

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS----- 328
           +++  N ++   A + LK  K F ++A +     +  + G+   +YI    L ++     
Sbjct: 161 EIITDNAEQIKAAERDLKAKKSFAEVARKYSIDPNIKAGGAVFSDYISLRDLQEARPNIY 220

Query: 329 -IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
                 KKG ++  I G   + + ++++ +        ++K+ +   +   +  E V   
Sbjct: 221 QAIGSLKKGQYSKPISGDKLHAVYYINDKRKISIEPLDKIKEGLRAGLANERVQEAVGNL 280

Query: 388 YKRL 391
            +  
Sbjct: 281 MQNA 284


>gi|323466514|gb|ADX70201.1| Protease maturation protein [Lactobacillus helveticus H10]
          Length = 301

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 80/210 (38%), Gaps = 27/210 (12%)

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILF 237
            + ++ +  +       S+  + Q +  YK+ Y                   + I   L 
Sbjct: 60  ANLLIYDALNEQYGKKLSSKAVNQEYNNYKERYGDQFASFLSQNGYTTTSFRRMIKINLL 119

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                + +I+ ++ +L+ E++            TV+ ++  ++  A+   Q L  G  F 
Sbjct: 120 SKIALKAQIKPTDKQLKKEWKTYSPS------VTVQHILTTDKNTANTVIQKLNNGTSFA 173

Query: 298 QLAEEQGKSLSDISLGS----FSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            LA++     S  S G     F+K+    D S  D+ + L      T  +  + GY I  
Sbjct: 174 SLAQKYSVDSSSSSNGGKIAAFNKDNKQLDSSFKDTAYKLKNGEYTTTPVKTTNGYEIIK 233

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           +  IK     +F+E K+D+ N +    A+ 
Sbjct: 234 M--IKHPAKGNFEENKQDLINNLYDKWAAN 261


>gi|206890347|ref|YP_002248393.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742285|gb|ACI21342.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 341

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 55/381 (14%), Positives = 125/381 (32%), Gaps = 83/381 (21%)

Query: 14  AKIFLVVLFVPF----LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
            K    ++ V F    LI+ L+           +  V R  + +S        E     +
Sbjct: 23  IKFVFFLMIVFFCTQLLIFKLNAEENKFFVDKVIAVVNRDVITWSELYK--YMEFTAKDE 80

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
                 + +       +++ L+ L+      +  E  G+      + G I        K 
Sbjct: 81  IKALNPDEKFKYFKAHEEEFLERLIDTKLQIEEAEKYGIFVTDSEIEGAINDI----KKK 136

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
              +   F+  L +EG++    I+ Y KML    ++G  +  +  S +++          
Sbjct: 137 YALTEQAFLETLKKEGMS----INDYKKMLKEQIIIGRALNTLVKSKIII---------- 182

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
                              ++A +  +   + +     E   +S I              
Sbjct: 183 -------------------TDAEINNYIAAHPELSCDDEGYYVSQIFL------------ 211

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
                      K++    E+          + + +E F+ L +G+ F ++A +  + ++ 
Sbjct: 212 -----------KKRENQEEL----------KAKINEVFKRLIQGEPFSKVASQMSEDVTA 250

Query: 310 ISLGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
            + G+       +++    ++FS    G  +  +    G  I  +  +       F++  
Sbjct: 251 KTGGAIGLLKKKEIASELSNLFSKMNIGQVSEPMMTEHGIFIFRLDGV------CFKKGS 304

Query: 369 KDIANQMRITKASEKVKEDYK 389
           + + N +R     EK K+DYK
Sbjct: 305 EQLVNYVRSLLEDEKFKKDYK 325


>gi|254183780|ref|ZP_04890372.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           1655]
 gi|184214313|gb|EDU11356.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           1655]
          Length = 240

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 6/155 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +    + +  D++   Y + K K  + E   +  L  P + +A      L +G  F +L
Sbjct: 85  DDFFSAVSVDEDDIGTAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 143

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A       S      +G  ++  + DV+  + I ++ K G F+  I GS GY + +V + 
Sbjct: 144 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 201

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     S  ++++ +    R+ K    + E    +
Sbjct: 202 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 236


>gi|167465135|ref|ZP_02330224.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 246

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 97/351 (27%), Gaps = 112/351 (31%)

Query: 5   IRKASRTWVA---KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +R     W         VV+ V F+I+G + A  +    + V  +G+ K+       +  
Sbjct: 1   MRNIKLLWAVIGGLSLAVVVLVCFVIFGFTGA--ASGNGTVVAEIGKTKIRKGDLEQNLI 58

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
              G                       +L+ ++    +    +  GL+     +  E+  
Sbjct: 59  THYGS---------------------SVLNQMLDREAIKMEAQSAGLQISDADIDKELKV 97

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
               +  +  F    + S   + G++ +E  D                            
Sbjct: 98  MMQAYESEEVF----YQSMKEQLGMSRQEVKD---------------------------- 125

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                     V Y +L  +        S++ +  + + + + Y                 
Sbjct: 126 ---------DVYYKLLLEKVATKDIQVSDSEIQDYIQAHPEEY----------------- 159

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
                                         + ++    +++A++   +  KG  F +LA 
Sbjct: 160 -----------------------AKKREMHLRRVTTKTREQANKVVAAFSKGDDFAKLAR 196

Query: 302 EQGKS---LSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           ++       +   LG   ++  + D  +      L K G  +  +  + GY
Sbjct: 197 DRSIDDYANNGGDLGWVKEDDPLTDKQVMKQAKDL-KVGQISKPVQTNEGY 246


>gi|126173223|ref|YP_001049372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
 gi|125996428|gb|ABN60503.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
          Length = 434

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 114/371 (30%), Gaps = 71/371 (19%)

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
           N        L  ++++ L+      Q  + IGL     ++   I           K S  
Sbjct: 59  NQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KISVA 114

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
               ++  EG++       Y + L                 + L + +R   + R     
Sbjct: 115 QMQQKIESEGLS----FSQYREQLRE--------------EITLGEIQRIQVQRR----- 151

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
                        S   +T   +  ++        +I +IL DV       +        
Sbjct: 152 ----------IQVSPQEITSLVKLIQEQGMKDVEYQIGHILIDVPNNPTSEQ-------- 193

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
                               +  + K A+   + LK G+ F + A         +  G +
Sbjct: 194 --------------------LESSSKRANIVLERLKSGEDFRRTAIASSSGPKALEGGIW 233

Query: 316 SKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IAN 373
               I +  +L   + + AK GD    I    G+ I  + + +   T   +EV+   I  
Sbjct: 234 DYMNINEMPTLFAEVINGAKTGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILL 293

Query: 374 QMRITKASEKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
           +     + ++ K   ++ L++  +     ++++R+    S D       G+    +    
Sbjct: 294 KPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQY---SEDPGSATKGGELGWAEPSIY 350

Query: 433 IPYKEQLLFRV 443
           +P   Q L  +
Sbjct: 351 VPEFAQTLNSL 361



 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 14/109 (12%)

Query: 268 EIRTVEQLVFP-----NQKEADEAFQS----LKKGK-KFIQLAEEQGKSLSDISLGS--- 314
           E      ++       ++  A    +     ++ G+ KF  LA +  +     + G    
Sbjct: 284 EEVRARHILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSATKGGELG 343

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           +++  I     A ++ SL K    +     + G+ I  +   + +    
Sbjct: 344 WAEPSIYVPEFAQTLNSL-KTDQISEPFRTTHGWHITQLEERRKTDATD 391


>gi|294853303|ref|ZP_06793975.1| peptidyl-prolyl cis-trans isomerase C [Brucella sp. NVSL 07-0026]
 gi|294818958|gb|EFG35958.1| peptidyl-prolyl cis-trans isomerase C [Brucella sp. NVSL 07-0026]
          Length = 311

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285
           E    + +   +  +      S DE Q  YE N+ ++ S  I     ++        E  
Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174

Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332
                     A   + +   F  +A E     S     +LG  ++          ++  +
Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                    I   FGY I  +        + F  V   IA
Sbjct: 234 IPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273


>gi|183597819|ref|ZP_02959312.1| hypothetical protein PROSTU_01149 [Providencia stuartii ATCC 25827]
 gi|188022575|gb|EDU60615.1| hypothetical protein PROSTU_01149 [Providencia stuartii ATCC 25827]
          Length = 439

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/362 (11%), Positives = 109/362 (30%), Gaps = 59/362 (16%)

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
               L  +IL+ L++   + Q    + +      V   IA       + N  + +   +R
Sbjct: 62  DDETLRHQILERLITDNIMLQMANQMQINIPEEAVNATIADI----ARQNGLTFEQMQAR 117

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLN 198
           L  +GI+  +Y     K +   +V        +      ++   +        +  + L+
Sbjct: 118 LKADGIDMAKYRSEIRKEMLIAEVRNNEVRRRVTILPQEVESLAKQISSQADYEASVNLS 177

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-------- 250
           +  +P   +P+   L +  +           K  ++    +        +          
Sbjct: 178 HILIPLPENPTQEQLQK-ADAIVAKIMDEIKKGTNFGKLAIAYSADPQALKGGNMGWSRL 236

Query: 251 DELQAEYEKNKEKYFSPE-----------------------------IRTVEQLVFPN-- 279
            EL   + +  +     +                                   ++  +  
Sbjct: 237 QELPVVFAEQLKSAKKGDVVGPIRSGVGYHILRVNEMNSANKTISVTEVKARHILIKSSP 296

Query: 280 -------QKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADS 328
                  +++  +  Q ++ GK  F   A+E  +       G      +PD    +  D+
Sbjct: 297 IMDDNQARQKLTQITQDIRSGKTTFENAAKEFSEDPGSALKGGELGWNMPDVYDPAFRDA 356

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           +  L  KG+ +  +  +FG+ +  + + + +   +    K      +   K +E+ +   
Sbjct: 357 LMRL-NKGEISQPVRSNFGWHLIQLEDTR-NVDKTDAAQKDQAYRLLFNRKFNEEAQSWV 414

Query: 389 KR 390
           + 
Sbjct: 415 QE 416



 Score = 60.4 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 101/314 (32%), Gaps = 43/314 (13%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
             YR+   K +       +E  +++ I   E+++  ++   +        +  ++ P  +
Sbjct: 126 AKYRSEIRKEMLIAEVRNNEVRRRVTILPQEVESLAKQISSQADYEASVNLSHILIPLPE 185

Query: 282 --------EADEAFQSL----KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--LAD 327
                   +AD     +    KKG  F +LA         +  G+     + ++    A+
Sbjct: 186 NPTQEQLQKADAIVAKIMDEIKKGTNFGKLAIAYSADPQALKGGNMGWSRLQELPVVFAE 245

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKKD---IANQ--MRITKAS 381
            + S AKKGD    I    GY I  V+ +  +  T+S  EVK     I +   M   +A 
Sbjct: 246 QLKS-AKKGDVVGPIRSGVGYHILRVNEMNSANKTISVTEVKARHILIKSSPIMDDNQAR 304

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
           +K+ +     ++  +  T+ +  ++     S D       G+          P     L 
Sbjct: 305 QKLTQIT---QDIRSGKTTFENAAKEF---SEDPGSALKGGELGWNMPDVYDPAFRDALM 358

Query: 442 RVFGKDDPLSKDHT-----VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           R+   +             + L D   +           D+          +     K  
Sbjct: 359 RLNKGEISQPVRSNFGWHLIQLEDTRNV-----------DKTDAAQKDQAYRLLFNRKFN 407

Query: 497 EEVSSKANQLVLEY 510
           EE  S   +     
Sbjct: 408 EEAQSWVQEQRAAA 421


>gi|127511815|ref|YP_001093012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
 gi|126637110|gb|ABO22753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
          Length = 434

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 109/344 (31%), Gaps = 63/344 (18%)

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  + S++A    L  ++++ L+      Q  + IGL     ++   I        K+ K
Sbjct: 59  GQSLPSDKA----LRTQVIERLIVTRLQLQMADRIGLHIGDLQLDQTIENI----AKEQK 110

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLS-----RTDVVGMFVGGMRPSNLLLDQAKRFY 186
            + ++   ++  EG++  +Y +   + ++     R  V        +  N L+   +   
Sbjct: 111 MTPEMMREKVEAEGMSWSQYREQLREEITLGEIQRIQVQRRIQVSPQEINSLVKLIEEQG 170

Query: 187 FENRSVDYIVL--------NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
            +        +        N+  + A +  +NAVL +  +    +++       S     
Sbjct: 171 MQQVEYQIGHILIEVPNSPNSEQLEAASSRANAVLKRLQDN--ADFKQTAIASSSGPKAL 228

Query: 239 VHEKEKKIEISN-----DE---------------------LQAEYEKNKEKYFSPEIRTV 272
                  + ++       E                     +    +    +    +    
Sbjct: 229 EGGIWDYMNVNEMPTLFAELLVGAKTGDIIGPVRSGAGFHIIKVMDARGLQTKEIDEVRS 288

Query: 273 EQLVFP-----NQKEADEA----FQSLKKGK-KFIQLAEEQGKSLSDISLGS---FSKEY 319
             ++       +++ A          L++G+  F  LA +  +     + G    ++   
Sbjct: 289 RHILIKPSPILSEERAKAMLDKFAAQLRRGEADFATLARQYSEDPGSAAKGGELGWADPT 348

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           +   + A ++ +L K  + +     S G+ I  +   + +    
Sbjct: 349 VYVPAFAQTLGAL-KINEISEPFRSSHGWHIVQLEERRKTDATD 391



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 75/240 (31%), Gaps = 24/240 (10%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ- 280
             YR    + I+       + +++I++S  E+ +  +  +E+        +  ++     
Sbjct: 128 SQYREQLREEITLGEIQRIQVQRRIQVSPQEINSLVKLIEEQGMQQVEYQIGHILIEVPN 187

Query: 281 -----------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328
                        A+   + L+    F Q A         +  G +    + +  +L   
Sbjct: 188 SPNSEQLEAASSRANAVLKRLQDNADFKQTAIASSSGPKALEGGIWDYMNVNEMPTLFAE 247

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEK 383
           +   AK GD    +    G+ I  V + +   T    EV+     I     +   +A   
Sbjct: 248 LLVGAKTGDIIGPVRSGAGFHIIKVMDARGLQTKEIDEVRSRHILIKPSPILSEERAKAM 307

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           + +   +L    A   ++      +   +     + +A           +P   Q L  +
Sbjct: 308 LDKFAAQLRRGEADFATLARQYSEDPGSAAKGGELGWA------DPTVYVPAFAQTLGAL 361


>gi|121606958|ref|YP_984287.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595927|gb|ABM39366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
          Length = 469

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 66/473 (13%), Positives = 137/473 (28%), Gaps = 89/473 (18%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           VV V  + +  +       +    + Q+     +        L  ++L+ ++S     Q 
Sbjct: 64  VVVVNSEPITNNEVRTKLLRTEQQLKQQ-----SIALPPRSELMPQLLERMISDKAQLQA 118

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            +  G + D   V G +        + N+ + D    RL  +GI+  ++       L  +
Sbjct: 119 AQATGFKIDDNAVEGAVQTV----ARQNQITVDELRRRLKADGIDYAQFRSEIRDELLIS 174

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            +                                   R V +  + S   +  +      
Sbjct: 175 RLRQ---------------------------------REVESRINVSEMEIDDY------ 195

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
             R+ E K  +           +I ++             +  +PE       V   Q +
Sbjct: 196 -LRSQEGKPGAAGAAPAALNLAEILVA-----------VPENATPEQ------VASLQAK 237

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTP 340
           A +  +  K G  F  LA E   + S  + G               ++  SL   G    
Sbjct: 238 ARQVLERAKAGADFAALATEVSAAASRSNGGQIGLRSADRYPPLFVEATQSLP-AGGLAG 296

Query: 341 VIHGSFGYVIAHVSNIK----PSFTVSFQEVKK---DIANQMRITKASEKVKEDYKRLEE 393
            +  + G+ I  V   +    P   ++    +     +  Q+    A EK+    KR+  
Sbjct: 297 PVRSAAGFHILKVIEKRQGGLPDAVITQTHARHILLRLTPQLTEAAAVEKLAGFKKRI-- 354

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
            +A       ++R     +         G        A +P  E+++  +       ++ 
Sbjct: 355 -VAGQADFAALARENSQDA----SAKQGGDLGWVPGGAFVPEFEKVMNAL-----APNQV 404

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
               +       VQ+ E   A     ++    V+   +  K  E     A  +
Sbjct: 405 SDPLVSRFGVHLVQVLERREAPVSPRDQ-REMVRGMLREKKQNEAYVRWAEDI 456


>gi|17537235|ref|NP_496824.1| hypothetical protein Y48C3A.16 [Caenorhabditis elegans]
 gi|5832912|emb|CAB55116.1| C. elegans protein Y48C3A.16, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 126

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
            V  ++   Q +A EA + LK G KF ++A +  +    S   LG  ++  +      D+
Sbjct: 34  KVRHILCEKQGKALEAIEKLKSGMKFNEVAAQYSEDKARSGGDLGWMTRGSMVGP-FQDA 92

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L+     K     P +   FGY +  V   K
Sbjct: 93  AFALSNSSCDKPIYTDPPVKTKFGYHVIMVEGKK 126


>gi|76819072|ref|YP_335569.1| putative rotamase [Burkholderia pseudomallei 1710b]
 gi|254186693|ref|ZP_04893209.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|76583545|gb|ABA53019.1| putative rotamase [Burkholderia pseudomallei 1710b]
 gi|157934377|gb|EDO90047.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 244

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +    + +  D++ A Y + K K  + E   +  L  P + +A      L +G  F +L
Sbjct: 89  DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 147

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A       S      +G  ++  + DV+  + I ++ K G F+  I GS GY + +V + 
Sbjct: 148 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 205

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     S  ++++ +    R+ K    + E    +
Sbjct: 206 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 240


>gi|89072826|ref|ZP_01159383.1| peptidyl-prolyl cis-trans isomerase C [Photobacterium sp. SKA34]
 gi|89051348|gb|EAR56803.1| peptidyl-prolyl cis-trans isomerase C [Photobacterium sp. SKA34]
          Length = 108

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 18/100 (18%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  +++ AD+  + LKKG KF +LA++     S      LG F K  +       
Sbjct: 6   HALHILVKHKELADDILEQLKKGAKFQELAKKHSTCPSGKKGGDLGEFRKGAMV-PQFDK 64

Query: 328 SIF---------SLAKK-----GDFTPVIHGSFGYVIAHV 353
           ++F         +L KK     G     +   FG+ I  V
Sbjct: 65  AVFSGKAISTSEALKKKNNNLRGLIPEPVKTKFGWHIIKV 104


>gi|330504383|ref|YP_004381252.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
 gi|328918669|gb|AEB59500.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
          Length = 93

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVS 324
              T   ++  ++ + +E   +++ G  F QLA++        S   LGSF    +    
Sbjct: 2   ARATARHILVASEDKCNELKSAIEGGADFAQLAKDNSTCPSGRSGGDLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A  G     +   FGY +  V++ +
Sbjct: 61  FDTVVFS-APVGVVQGPVKTQFGYHLLEVTSRQ 92


>gi|254699581|ref|ZP_05161409.1| Chaperone surA precursor [Brucella suis bv. 5 str. 513]
 gi|261750037|ref|ZP_05993746.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5
           str. 513]
 gi|261739790|gb|EEY27716.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5
           str. 513]
          Length = 311

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 16/155 (10%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------- 285
           + +   +  +      S DE Q  YE N+ ++ S  I     ++        E       
Sbjct: 120 ALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQ 179

Query: 286 -----AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGD 337
                A   + +   F  +A E     S     +LG  ++          ++  +     
Sbjct: 180 TATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERMTPGET 238

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
               I   FGY I  +        + F  V   IA
Sbjct: 239 TANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273


>gi|306840866|ref|ZP_07473611.1| Chaperone surA precursor [Brucella sp. BO2]
 gi|306289137|gb|EFM60393.1| Chaperone surA precursor [Brucella sp. BO2]
          Length = 311

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 16/160 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E    + +   +  +      S DE Q  YE N+ ++ S  I     ++        EA 
Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQEAR 174

Query: 288 QS------------LKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSL 332
            +            + +   F  +A E     S     +LG  ++          ++  +
Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                    I   FG+ I  +        + F  V   IA
Sbjct: 234 TPGETTANPIESRFGFHIVRLDRRVEGEELPFDYVADKIA 273


>gi|326570911|gb|EGE20935.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           BC7]
          Length = 434

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 58/405 (14%), Positives = 122/405 (30%), Gaps = 74/405 (18%)

Query: 31  SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
             ++   S    V  V  + +  S    +  + +    QK G  V  ++A+++      L
Sbjct: 23  QASISGNSHDGIVAVVNDEIILKSELNQA-TELVATEIQKNGGNVTQDQAQTL-----AL 76

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI-NEK 149
           D L++       I   G+  +   +  ++ +     G +   S   F S+L  E   +  
Sbjct: 77  DELINEKLQLAIINRAGVIPNDEVIDQQLLQIAQSQGVN---SLSEFQSKLDAERAGSYV 133

Query: 150 EYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFENR--SVDYIVL--------- 197
               +  +  +   +        +R ++  +D         R   V Y +L         
Sbjct: 134 ALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRLLHIRVPYLDN 193

Query: 198 --------NNRHVPAIADPS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
                       V      S       +  +      Y  + +  +   I+         
Sbjct: 194 TASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLINATALPPAIA 253

Query: 243 EKK------------IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQK 281
            K             + ++  ++     K ++            ++            ++
Sbjct: 254 AKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSSDIAEQ 313

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           + +  +Q L++G  F  LA              SLG  ++  +        + + AK GD
Sbjct: 314 KINAIYQQLQQGVDFGTLAATYSDDTGSASQHGSLGWVNEGDMV-PEFETMMKNTAK-GD 371

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           F+      FG+ I  V++IK          + DI  Q R   A E
Sbjct: 372 FSTPFRSQFGWHILKVNDIK----------QHDITEQYRRNAAHE 406


>gi|262039460|ref|ZP_06012764.1| foldase protein PrsA [Leptotrichia goodfellowii F0264]
 gi|261746527|gb|EEY34062.1| foldase protein PrsA [Leptotrichia goodfellowii F0264]
          Length = 607

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 77/269 (28%), Gaps = 41/269 (15%)

Query: 4   IIRKASRTWVAKIFLVVLFVPFLI------WGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
            +RK     + K   + L + F +      W        +     +  V  +K+      
Sbjct: 2   SVRKHKN--IIKGISIALIIAFALSMVYAGWNFLKNNVFIERKKVIAEVNGEKIYADDME 59

Query: 58  NSWK-----------QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
            S+            Q    I+Q  G   N +      L + +L  L+    L    +D+
Sbjct: 60  KSYADLSSRLDSIVAQRKQQIAQLGGNPDNFKSLPEELLREYLLKGLIDQKLLLSSAKDL 119

Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
            ++     +   +        +      + F+  L   G N   Y +     +    V  
Sbjct: 120 KVKVSSADIDKIVEND---QKQAGG--KENFIRLLGTNGYNLTTYKEFIRDKMLLEKVAE 174

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
                 + S+  L +A           Y   N +      +    ++             
Sbjct: 175 KIESSSKISDEELKKAYE--------RYKYFNFQD-QTFEEAKPQLIETLNGDN------ 219

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQA 255
            E   IS  L    +  K I+I ND+++ 
Sbjct: 220 -EQMLISSYLVKAWKNAK-IKIKNDDVKK 246



 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/471 (11%), Positives = 146/471 (30%), Gaps = 61/471 (12%)

Query: 49  QKVPFSSFINSWKQE-LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG 107
            K+       ++++        +       +   ++  D +    L+S   +  + ++  
Sbjct: 180 SKISDEELKKAYERYKYFNFQDQTFEEAKPQLIETLNGDNE--QMLISSYLVKAW-KNAK 236

Query: 108 LEADHGRVWG------------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
           ++  +  V               I     +  +    +  +    +     +E  Y +  
Sbjct: 237 IKIKNDDVKKIDYKKMYENITKTIVEKDGYKFEGGSLNEKIITMFVN----SENGYSEAL 292

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            +                    L     +     +      +      A     N    +
Sbjct: 293 REE---------------AKKSLESDLNKLIEIAKKAKAAGIKASPEAAGIQELNDYAKK 337

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           ++    D Y+  E   +            +  I+   +   ++ +K  +           
Sbjct: 338 YYSYLIDTYKPTEQAMLERFNSKRETYNIQNTIAGQVVGDYFQPSKADFD---------- 387

Query: 276 VFPNQKEADEAFQSLKK---GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
               +K+A+E  +++     G+K  +L+++ G   +   LG      +     A+++   
Sbjct: 388 --EVKKKAEELIKTVNVENFGQKAKELSQDPGSKDNGGQLGVIDLSGMV-PEFAEAV-KK 443

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           A+KG     +   FGY I +V + K S      +V   +          +++ +  K L+
Sbjct: 444 AEKGKIVGPVKTQFGYHIIYVED-KDSSNSDKAKVSHILLTPSVSEATKQELIKKMKTLK 502

Query: 393 EFL-ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP-YKEQLLFRVFGKDDPL 450
           + L A   +  +++ ++K       + +   K  K + +  +  Y  +L  ++F      
Sbjct: 503 DELTAKKVTWQQVNTQDKY---KFEIKEQFKKLTKSQPIPGVGKYDSELSNKLFASKVGD 559

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
             +H        Y  +     +P ++   + V   ++ +       EE+  
Sbjct: 560 IIEHQTEY---GYFLLSKISEVPFKEVTFDSVKERIRLELAFEHVNEEIEK 607


>gi|110679691|ref|YP_682698.1| peptidyl-prolyl cis-trans isomerase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455807|gb|ABG32012.1| peptidyl-prolyl cis-trans isomerase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 276

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 67/185 (36%), Gaps = 17/185 (9%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
              +   E   +  +L +          S   ++AE+EK+  ++ +P +  V  ++    
Sbjct: 69  PSRFETEEEALVRGLLDEAVVVSAP---SAASVRAEWEKDPLRFRTPPLWEVSHILVACD 125

Query: 281 KEADEAF------------QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLA 326
              +EA             Q+L     F +LA  +    S  + G+  ++   D      
Sbjct: 126 PRDEEARRQAHARAVDLTGQALGNPNGFAKLAARESDCGSKSTGGALGQQSPGDTVPEFE 185

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            ++  L + G     I   +G+ I  +  +     + F  VK+ I++ M     +   K+
Sbjct: 186 AALRQLTEGGITGEPILTRYGWHIIKLDAVAIGAVLPFDAVKQKISDAMEKASWARAAKD 245

Query: 387 DYKRL 391
             + L
Sbjct: 246 FVQTL 250


>gi|23500050|ref|NP_699490.1| peptidyl-prolyl cis-trans isomerase [Brucella suis 1330]
 gi|254702703|ref|ZP_05164531.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella suis bv. 3
           str. 686]
 gi|261753291|ref|ZP_05997000.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 3
           str. 686]
 gi|23463639|gb|AAN33495.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella suis 1330]
 gi|261743044|gb|EEY30970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 3
           str. 686]
          Length = 311

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285
           E    + +   +  +      S DE Q  YE N+ ++ S  I     ++        E  
Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174

Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332
                     A   + +   F  +A E     S     +LG  ++          ++  +
Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                    I   FGY I  +        + F  V   IA
Sbjct: 234 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVVDKIA 273


>gi|222056243|ref|YP_002538605.1| hypothetical protein Geob_3161 [Geobacter sp. FRC-32]
 gi|221565532|gb|ACM21504.1| conserved hypothetical protein [Geobacter sp. FRC-32]
          Length = 580

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           ++    ++R      + + +F       +I+++++E++A Y    +++  PE+  +  L 
Sbjct: 390 YKNRIKDFRD----SLLFGMFIQKVVASEIKVTDEEIKAHYNAEIDEFSLPEMLKLRGLA 445

Query: 277 FPNQKEADEAFQSLKKGKKFIQL-AEEQGKSLSDIS-LGSFSKEYIPDVSLAD---SIFS 331
           F  +  A+ A + L+KG ++  L A  +G    D   L SFS+  +   SL +      +
Sbjct: 446 FTRKDFAEAAMEKLQKGTEYQWLQANAEGLVPGDTEGLMSFSQTPVTRKSLPEKMQEAIA 505

Query: 332 LAKKGDFTPVIHGSFGYV-IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            AK G++  +     G+V +  V  + P+     ++VK+ I  ++   K ++ V++  ++
Sbjct: 506 AAKPGEY-RLFETPEGFVYVIQVQEVIPAKPQPLEQVKQSITKEVFNQKLNKSVEDWGQK 564

Query: 391 LEEF 394
           L E 
Sbjct: 565 LREA 568



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 60/441 (13%), Positives = 142/441 (32%), Gaps = 74/441 (16%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            ++ K ++ +  + +  Y++  ++     +R      F  + +A E  ++++ G  F +L
Sbjct: 145 EQQIKDLKPAEADTERFYKEAVKELKVKSVR------FDKEDDAKELARAVQAGGNFDEL 198

Query: 300 AEE--QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           A    +    + +  G F K       +A  + SL + G  +PV+     Y I  + +I+
Sbjct: 199 ANSLIESGKATGVKEGEFVKAKELLPQVAHIVSSL-RVGGISPVVQVGPAYTILKLEDIR 257

Query: 358 -PSFTVSFQEVKKDIANQMRITKASEKVK----EDYKRLEEFLALGTSMDEISRREKIVS 412
            P+  +  +E  ++ A  ++  +   +      + Y +++  L      +        + 
Sbjct: 258 YPADDMEAREAAREQALALKQLQVLTEYNGMLVKKYAKIDRKLLDKLDFESAKPGFDKLL 317

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF-------GKDDPLSKDHTVALPDGSY-- 463
            D  ++      +KG +   +    ++L + F        K   +++    AL D  Y  
Sbjct: 318 KDKRVIA----TIKGDKPITVADLGEMLKQKFFHGVKEAAKGKRINEQKMPALYDIFYAR 373

Query: 464 --------MWVQIKESIPARDRKL----------------------EEVLTDVKKDWKTV 493
                   + +   ES   R +                        EE+      +    
Sbjct: 374 LYPMEAKKLGLDKTESYKNRIKDFRDSLLFGMFIQKVVASEIKVTDEEIKAHYNAEIDEF 433

Query: 494 KTAEEVSSK---------ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI---NRMDNEN 541
              E +  +         A   + +  K  +         G     T  +   ++     
Sbjct: 434 SLPEMLKLRGLAFTRKDFAEAAMEKLQKGTEYQWLQANAEGLVPGDTEGLMSFSQTPVTR 493

Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601
           K         + +      + F    G  YV+ +V        Q  ++    +T+ +   
Sbjct: 494 KSLPEKMQEAIAAAKPGEYRLFETPEGFVYVI-QVQEVIPAKPQPLEQVKQSITKEVFNQ 552

Query: 602 LLDSVIAY----LKSQYSVTV 618
            L+  +      L+  Y V V
Sbjct: 553 KLNKSVEDWGQKLREAYKVQV 573



 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S  V +VG   V    F  S    L  + Q+ G   ++ +         +L+ L++   +
Sbjct: 61  SVPVATVGDDVVTMEEFNQS----LAALHQRAGEDESAGKKDY----NIVLNRLINSKLI 112

Query: 100 DQFIEDIGLEADHGRVWGEIARSP 123
            Q  E++GL AD   V  ++   P
Sbjct: 113 VQEAENMGL-ADLPEVKEKLEDFP 135


>gi|281421755|ref|ZP_06252754.1| chaperone SurA [Prevotella copri DSM 18205]
 gi|281404250|gb|EFB34930.1| chaperone SurA [Prevotella copri DSM 18205]
          Length = 328

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 37/182 (20%)

Query: 253 LQAEYEKNKEKYFSPEI--RTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQ 298
           +   Y+  +     P+     V  ++    ++A            D  +Q+L KG  F  
Sbjct: 87  VLKRYDDVEPCELMPDKGSVHVAHILLRLGQKASYREQEVVERRIDSIYQALCKGADFAD 146

Query: 299 LAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA+    ++G +++  +L  F+K      +     FSL K G+ +      FGY I  + 
Sbjct: 147 LAKKCSDDKGSAVNGGTLAWFTKGQTV-QAFEKVAFSLRK-GEISRPFMSEFGYHIVKLL 204

Query: 355 NIKPSFTVSF-----------------QEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
           +                          +EV+  + N++      +K   D K L  F A 
Sbjct: 205 DKHDDGNQKKYVADAKVENWRGTYQQQEEVENLLLNEICQRNIWDKAAADKKGLAAFYAK 264

Query: 398 GT 399
             
Sbjct: 265 NK 266


>gi|90577547|ref|ZP_01233358.1| peptidyl-prolyl cis-trans isomerase C [Vibrio angustum S14]
 gi|90440633|gb|EAS65813.1| peptidyl-prolyl cis-trans isomerase C [Vibrio angustum S14]
          Length = 108

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 18/100 (18%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  +++ AD+  + LKKG KF +LA++     S      LG F K  +       
Sbjct: 6   HALHILVKHKELADDILEHLKKGAKFQELAKKHSTCPSGKKGGDLGEFRKGAMV-PQFDK 64

Query: 328 SIF---------SLAKK-----GDFTPVIHGSFGYVIAHV 353
           ++F         +L KK     G     +   FG+ I  V
Sbjct: 65  AVFSGKAISTSEALKKKNNNLRGLIPEPVKTKFGWHIIKV 104


>gi|162449966|ref|YP_001612333.1| peptidyl-prolyl cis-trans isomerase [Sorangium cellulosum 'So ce
           56']
 gi|161160548|emb|CAN91853.1| peptidyl-prolyl cis-trans isomerase [Sorangium cellulosum 'So ce
           56']
          Length = 302

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 74/202 (36%), Gaps = 14/202 (6%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK---F 296
            E      ++++E++A YE +++++ SP +  + +++   + EA+     LKK      F
Sbjct: 84  AEAAASSPVTDEEVRAYYEAHRDRFSSPAMVALWRILVATRGEAEAILAELKKDPSPQRF 143

Query: 297 IQLAEEQGKSLS----DISLGSFSKEYI-------PDVSLADSIFSLAKKGDFTPVIHGS 345
            ++A E+    +       LG  + +          D  L  +   +         +   
Sbjct: 144 KEIAREKSLDKATSMRGGDLGFVASDGTTSEPGLKVDPGLLSAAAGVKDAELVPEPVPEG 203

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
            G+ +      +   + S ++    I   +   KA  +VK+   RL      G + + + 
Sbjct: 204 DGFAVLWRRQSRKPVSRSLEQEAPSIRQILAHGKAEAQVKQLLDRLRAQDVSGHAPEIVD 263

Query: 406 RREKIVSIDLPLVDFAGKDVKG 427
             +   + DL      G    G
Sbjct: 264 LIDVTSTGDLQPKRRPGTLASG 285


>gi|78486057|ref|YP_391982.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
           crunogena XCL-2]
 gi|78364343|gb|ABB42308.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
           crunogena XCL-2]
          Length = 93

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           T   ++   + +A E  + +++G  F  +A+       S S   LG F    +       
Sbjct: 5   TARHILVETEAKALELKKQIEEGADFADVAKANSSCPSSRSGGDLGQFGPGMMV-PEFDK 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
             FS A  G     I   FGY +  V++   
Sbjct: 64  VCFS-ADVGSLEGPIKTQFGYHLVEVTDRTE 93


>gi|119355885|ref|YP_910529.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353234|gb|ABL64105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 438

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/310 (16%), Positives = 104/310 (33%), Gaps = 37/310 (11%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRTVEQLV------FPNQ 280
           E K    I     ++   I ++++E    Y  +K++     E+  + Q++        ++
Sbjct: 134 ELKDQQLIETLRKKQLAGITVTHEETVDFYRNHKQQLPQVSELVGLSQILKYPDLPQGSK 193

Query: 281 KEADE----AFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSL 332
             A          LK G  F   A +  +          LG   K  +   S  D+ F L
Sbjct: 194 DAALAQMKIVQAELKAGADFAATARKYSQDPGSAKLGGDLGYVQKGELV-RSFEDAAF-L 251

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFT------VSFQEVKKDIANQMRITKASEKVKE 386
            K G  + ++   +GY I      KP+        +++ + K D          + ++  
Sbjct: 252 LKDGKISDIVETRYGYHIIQRLEKKPNAVHLRHILIAYDQSKTD-------EPGTVQLLS 304

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
             K   + LA   +  +++++     +   L         GK +  +      + ++ G 
Sbjct: 305 RIKS--DVLAGRATFADMAKKYSDDPVSGKLGGVILSGGSGKTLLPVASLRPQMMQIVGS 362

Query: 447 D---DPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
                 +S    +    G+      Q+   IP     LE+    +++     K  E  + 
Sbjct: 363 LRNIGDISDPQKIDFQKGNLFYGIFQLNAKIPVHQLNLEQDYASLEELALEAKKQERYNE 422

Query: 502 KANQLVLEYS 511
             +QL  E  
Sbjct: 423 WLSQLKKEVL 432


>gi|254715206|ref|ZP_05177017.1| Chaperone surA precursor [Brucella ceti M13/05/1]
 gi|261216924|ref|ZP_05931205.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M13/05/1]
 gi|260922013|gb|EEX88581.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M13/05/1]
          Length = 311

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285
           E    + +   +  +      S DE Q  YE N+ ++ S  I     ++        E  
Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174

Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332
                     A   + +   F  +A E     S     +LG  ++          ++  +
Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                    I   FGY I  +        + F  V   IA
Sbjct: 234 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273


>gi|323495831|ref|ZP_08100899.1| putative parvulin-like peptidyl-prolyl isomerase [Vibrio
           sinaloensis DSM 21326]
 gi|323319047|gb|EGA71990.1| putative parvulin-like peptidyl-prolyl isomerase [Vibrio
           sinaloensis DSM 21326]
          Length = 431

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 108/333 (32%), Gaps = 83/333 (24%)

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
           L +++ + L+      Q  E IG+  D  R+   I        K+N  + +     +A E
Sbjct: 68  LRQQVTEKLIIDTLQQQEAERIGIRIDDNRLNEAIEEI----AKNNNQTIEQLSDSIAAE 123

Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
           G+   E+ +   K ++ T+     V                    R ++ +     ++  
Sbjct: 124 GLEYSEFREQVRKEIAATEARNALV-------------------RRRINILPAEVDNLAN 164

Query: 205 I-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
           I A  +NA +                 +I +I   V++ +    I               
Sbjct: 165 ILAQETNATVQ---------------YKIGHIQLRVNDGDDASAI--------------- 194

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYI 320
                           +++A E    L  G  F  +A       K+L     G   KE +
Sbjct: 195 ----------------EQQAKEIVAKLNNGSDFATMAYTYSKGPKALQGGDWGWMRKEEM 238

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--M 375
           P    AD +  +  KG          G+ I  + ++K   TV+  EV      I     +
Sbjct: 239 P-TIFADQV-GVQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIRPTVIL 296

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
                 +++ E   R++   +   +  E++R+ 
Sbjct: 297 SDDGVQKELNEIIARIQ---SGEATFGELARQY 326


>gi|300022454|ref|YP_003755065.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524275|gb|ADJ22744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 292

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 56/158 (35%), Gaps = 18/158 (11%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK------------F 296
                   YE N+ ++ S  +   + ++   +++ D ++ + ++               F
Sbjct: 117 DEATSHRFYENNRRRFTSAALYEADHILIGARRDDDASYAAARERATSIAAVLATEPDQF 176

Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            +LA       S     SLG  +     +     ++ SLA  G+ +  +   +G  +  +
Sbjct: 177 AELARAWSACPSATLGGSLGQIAPGDTTE-EFEAALVSLA-PGEISGPVETRYGVHVIRL 234

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +      T+ F+ V++ I   +       +    Y  L
Sbjct: 235 NRRIEGNTLPFEAVRERIEAYL-DDHVRRQATAQYIAL 271


>gi|254691283|ref|ZP_05154537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           6 str. 870]
 gi|256256468|ref|ZP_05462004.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           9 str. C68]
 gi|260756889|ref|ZP_05869237.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           6 str. 870]
 gi|260882704|ref|ZP_05894318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           9 str. C68]
 gi|297249827|ref|ZP_06933528.1| peptidyl-prolyl cis-trans isomerase C [Brucella abortus bv. 5 str.
           B3196]
 gi|260676997|gb|EEX63818.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           6 str. 870]
 gi|260872232|gb|EEX79301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           9 str. C68]
 gi|297173696|gb|EFH33060.1| peptidyl-prolyl cis-trans isomerase C [Brucella abortus bv. 5 str.
           B3196]
          Length = 311

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285
           E    + +   +  +      S DE Q  YE N+ ++ S  I     ++        E  
Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174

Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332
                     A   + +   F  +A E     S     +LG  ++          ++  +
Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                    I   FGY I  +        + F  V   IA
Sbjct: 234 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273


>gi|167820136|ref|ZP_02451816.1| rotamase [Burkholderia pseudomallei 91]
          Length = 180

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 6/155 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +    + +  D++ A Y + K K  + E   +  L    + +A      L +G  F +L
Sbjct: 25  DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVSGEADALRLRNQLIQGASFGEL 83

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A       S      +G  ++  + DV+  + I ++ K G F+  I GS GY + +V + 
Sbjct: 84  AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 141

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     S  ++++ +    R+ K    + E    +
Sbjct: 142 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 176


>gi|146299709|ref|YP_001194300.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacterium
           johnsoniae UW101]
 gi|146154127|gb|ABQ04981.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacterium
           johnsoniae UW101]
          Length = 475

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 60/384 (15%), Positives = 127/384 (33%), Gaps = 65/384 (16%)

Query: 157 KMLSRTDVVGMFV-------GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD-- 207
           K ++R  ++G  +         ++ S ++ D   R   E R ++Y++     +  + +  
Sbjct: 85  KDITRCQMLGKLLEDKLYAHQAIQDSIIVSDAEVRGMMEER-LNYMIQQVGDINKVVEYY 143

Query: 208 --PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK-NKEKY 264
              S      +F          E K  S +     +  K +EI+ +E++  + K  K++ 
Sbjct: 144 KKSSVEEFKTYFAD-----ILKEQKLASEMR---DKIVKDVEITPEEVRNFFRKIPKDEL 195

Query: 265 FS-PEIRTVEQLVFP---NQKEADEAFQSLKK-------GKKFIQLAEEQGKSLSDISLG 313
            +      V Q+V     ++++  +    L         G  F   A    +       G
Sbjct: 196 PTFGAEMEVAQIVVEPKVSKEDKQKVIDRLNAIRKDVLEGSSFATKAVLYSQDPGSAPNG 255

Query: 314 S---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-------- 362
                +++        D  FSL ++G+ +     +FGY I  V  IK             
Sbjct: 256 GYYKMTRKTPFVKEFKDVAFSL-QEGEISAPFETTFGYHIIMVDKIKGQEVELRHILIAP 314

Query: 363 -----SFQEVKKDIANQMRITKASEKVKEDYKRLE----EFLALGTSMDEISRREKIVSI 413
                + +E K+ IAN      + E    D  R E    E  A G ++   + ++     
Sbjct: 315 TVSESALKEAKERIANIRAKIVSKELTFADAARTESDEKETRANGGTLINPNTQD----- 369

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
                +    D       +    +++   +   DD   K + +          +I E   
Sbjct: 370 --TRFELTKMDPTLYGQVSNLKDDEVSQPLLNTDDKGKKTYKLITVTN-----RIDEHTA 422

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAE 497
              +   ++     K+ +    A+
Sbjct: 423 DYAKDYTKIKELALKEKQINAIAK 446


>gi|294782675|ref|ZP_06748001.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 1_1_41FAA]
 gi|294481316|gb|EFG29091.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 1_1_41FAA]
          Length = 563

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 69/485 (14%), Positives = 158/485 (32%), Gaps = 70/485 (14%)

Query: 58  NSWKQELGMISQKIGFVVN-SERARSVGLDKKILDNLVSGATLDQFIEDI---GLEADHG 113
           +    +   +   +G         +  GL K  L N +    L Q   +     +     
Sbjct: 106 SEVNAQYEELESSMGDKEQFRRMLQVQGLTKDSLKNKIEENLLMQKTREEFSKNINPTDE 165

Query: 114 RVWGE--IARSPLFHGKDN------KFSHDVFVSRL--AREGIN----EKEYIDHYTK-- 157
            +     +   P    +D       +   + F   L  AR+ +       EY +   K  
Sbjct: 166 EINAYMSLYSIPSDKKEDAISLYKMEKGEEAFKLALIKARKEMQIKDLAPEYENLVEKVS 225

Query: 158 ---------MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
                     L    ++  F+   + +    ++  +     +    I +           
Sbjct: 226 YEEDGFKVTNLDLAKIMATFMINQKATKEQAEELAKNMLAKQ----IKVAKMAKEKGVKV 281

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +  +          +  +       Y +    +  ++I+ ++ EL++ +  NK +Y  PE
Sbjct: 282 NEEL----------DLMSQLQ---EYTVGLSEKLREEIKPTDAELESFFNANKSRYNIPE 328

Query: 269 IRTVEQLVFP----------NQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFS 316
               + +              + EA++    L   + F +  +  G  + +    LG+F 
Sbjct: 329 TADAKLIFITVKSTKEDDAVAKAEAEKLLAELT-PENFSEKGKSIGNNQDIIYQDLGTFG 387

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           K+ +      +++  +        VI   FGY + +V     +   S + +   +     
Sbjct: 388 KQAMVK-EFEEALKDVPSNTVINKVIKTKFGYHVVYVKKNDNNQQWSAEHI---LIVPYP 443

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
             K  E+  E   +L+  +  GT    ++   KI    +   D  G    G  +    Y 
Sbjct: 444 SEKTVEEKLEKLNKLKADIEAGT----VALNNKIDEDVIQSFDAKGITPDGI-IPDFIYS 498

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
            ++   V+  + PL+K   +     + +  Q  + + A +     +  +VKKD+  ++  
Sbjct: 499 PEIAKAVY--ETPLNKVGIINPNKATIIVFQKTKEVKAEEANFSNLKEEVKKDYINIQVG 556

Query: 497 EEVSS 501
           E +S 
Sbjct: 557 EYMSK 561



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 71/625 (11%), Positives = 184/625 (29%), Gaps = 81/625 (12%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINS 59
           +   RK  + ++  +  V+  +     G      S +   +   + + +  +       +
Sbjct: 3   IRKFRKQMKPFII-VLTVIFILSLAYGGYESFRTSRANKKAQEAMLLNKDYIQKIDIERA 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            ++              +E      +D    ++++         + + ++     V    
Sbjct: 62  KQEVSRAY---------AETVDKDIVDIIAFNDVIDKKLTLDLAKSLKVKVPSSEVN--- 109

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
           A+             + F   L  +G+ +    +   + L        F   + P++  +
Sbjct: 110 AQYEELESSMG--DKEQFRRMLQVQGLTKDSLKNKIEENLLMQKTREEFSKNINPTDEEI 167

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           +     Y          ++   +    +     L +  ++ +    APEY+ +   +  V
Sbjct: 168 NAYMSLYSIPSDKKEDAISLYKMEKGEEAFKLALIKARKEMQIKDLAPEYENL---VEKV 224

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-LKKGKKFIQ 298
             +E   +++N +L          +   +           +++A+E  ++ L K  K  +
Sbjct: 225 SYEEDGFKVTNLDLAKI----MATFMINQK--------ATKEQAEELAKNMLAKQIKVAK 272

Query: 299 LAEEQGKSLSD------------ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           +A+E+G  +++            + L    +E I         F  A K  +        
Sbjct: 273 MAKEKGVKVNEELDLMSQLQEYTVGLSEKLREEIKPTDAELESFFNANKSRYNIPETADA 332

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
             +   V + K    V+  E +     ++      E   E  K              I  
Sbjct: 333 KLIFITVKSTKEDDAVAKAEAE-----KLLAELTPENFSEKGK-------------SIGN 374

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
            + I+  DL          + +E         ++ +V          +     +      
Sbjct: 375 NQDIIYQDLGTFGKQAMVKEFEEALKDVPSNTVINKVIKTKFGYHVVYVKKNDNNQQWSA 434

Query: 467 QIKESIP-ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           +    +P   ++ +EE            K  +    KA+      +   K   D+ ++  
Sbjct: 435 EHILIVPYPSEKTVEE------------KLEKLNKLKADIEAGTVALNNKIDEDVIQSFD 482

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
           A  +T + I      +  +  +    V+  P+  V      N  + +VF+ T        
Sbjct: 483 AKGITPDGI----IPDFIYSPEIAKAVYETPLNKVGIIN-PNKATIIVFQKTKEVKAEEA 537

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYL 610
                   + +      +   ++ L
Sbjct: 538 NFSNLKEEVKKDYINIQVGEYMSKL 562


>gi|167616017|ref|ZP_02384652.1| peptidylprolyl isomerase [Burkholderia thailandensis Bt4]
 gi|257142572|ref|ZP_05590834.1| peptidylprolyl isomerase [Burkholderia thailandensis E264]
          Length = 265

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 18/172 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------ADEAFQSLKKGKKF 296
           + ++D+ +  Y  +  ++   +I     ++F                    ++L   + F
Sbjct: 89  QPTHDDCERYYRNHAARFRRHDIVHASHILFAVTDATPLALLRREAEAALARALAAPQTF 148

Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             LA E      S    +LG   +          ++F   + G    +++  FG+ I  +
Sbjct: 149 ETLARELSNCPSSAVGGNLGQLLRGDSV-PEFDAAVFDTPELGVLPRLVNTRFGFHIVRI 207

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
               P   V F  V  DIA  +   +   K  + Y  +   LA G  ++ ++
Sbjct: 208 ERRVPGDPVPFDAVAADIAAFLA-QRVRHKAIQQYVTI---LASGARIEGVA 255


>gi|288928286|ref|ZP_06422133.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288331120|gb|EFC69704.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 713

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 72/595 (12%), Positives = 177/595 (29%), Gaps = 80/595 (13%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGF-VVNSERARSVGLDKKILDNLVSGATL 99
             V  V  +K+    F     +    I  + G   +N E+     +   +  + V    +
Sbjct: 43  QQVGEVNGEKISVQEFQKMVDEYAEAIKMQQGQDNLNDEQLNQ--VKDMVWTSYVQNKLV 100

Query: 100 DQFIEDIGLEADHGRVWG--------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
           ++  +++GL      +           + ++P  + +  +F        LA       EY
Sbjct: 101 EKEAKELGLTVTDQEMQNVLNQGTNPMLMQTPFVNQQTGRFDASSLKKFLA-------EY 153

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
            +  T                          K+   +  +  Y  L    + +       
Sbjct: 154 KNQQTTNPQMAQQYESIY------KFWTFIEKQLRTQLLAQKYQSLLAHCLLSNPV---E 204

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK-KIEISNDELQAEYEKNKEKYFS-PEI 269
               + E+        E  +I    F     E  K+++S  +L+A+YE+ K ++    E 
Sbjct: 205 AKMAFKEEN-------EESQIQLAAFPYSSIEDSKVQVSESDLKAKYEELKPRFKQYVET 257

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS-----------LGSFSKE 318
           R ++ +    +   ++    LKK  +F    +E  ++    +           LG    +
Sbjct: 258 RDIKYIDIQVEASPED-KAGLKK--QFADYTKELTEAADPTNVVRKSSSLVNYLGLPVGK 314

Query: 319 YIPDVSLADSIFSLAKKGDFTPVI-HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
                 +A  + S++    + PV         +  +     +       V  +       
Sbjct: 315 DAYPSDIAARLDSMSVGSVYGPVENKQDNTLNLVKLV----AKVQLPDSV--EYRQIQVG 368

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
               E   +    +   L  G   + ++++         +     +     +     Y  
Sbjct: 369 GATPEAAHKTADSIYTALTNGADFEALAKKYGQTGEKTWMTTRQYQMAPSMDKDTKDYIN 428

Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQ------IKESIPARD-RKLEEVLTDVKKDW 490
            L          ++    + L  G+ +         + +   A   R ++      +K +
Sbjct: 429 SL------NTMGVNDIKNITLAQGNIILQVLNRKGMVTKYQAAVVKRTIDFSKETYRKAY 482

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
               +    ++ A+ +V    K G   ++  K++  S      I            + + 
Sbjct: 483 NQFSSFVSANATADAVVKNAVKNGYRLQE-AKDVTTSQHNLAGIRST--------REALK 533

Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605
            +F      V     E G +  +  V    + P+  +    S + +M+  +++  
Sbjct: 534 WLFDAKEGSVSPL-YECGDNNHLLLVILDHINPMGYRSLTDSQVKEMVKAEVIKD 587



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 109/356 (30%), Gaps = 29/356 (8%)

Query: 267 PEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318
           P+     Q+           K AD  + +L  G  F  LA++ G++   + ++   +   
Sbjct: 357 PDSVEYRQIQVGGATPEAAHKTADSIYTALTNGADFEALAKKYGQTGEKTWMTTRQYQMA 416

Query: 319 YIPDVSLADSIFSLAKKG--DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
              D    D I SL   G  D   +     G +I  V N K   T     V K       
Sbjct: 417 PSMDKDTKDYINSLNTMGVNDIKNITLAQ-GNIILQVLNRKGMVTKYQAAVVKR-----T 470

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
           I  + E  ++ Y +   F++   + D + +        L              +A I   
Sbjct: 471 IDFSKETYRKAYNQFSSFVSANATADAVVKNAVKNGYRLQEAKDV--TTSQHNLAGIRST 528

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL--EEVLTDVKKDWKTVK 494
            + L  +F   +           +   + V +    P   R L   +V   VK +    K
Sbjct: 529 REALKWLFDAKEGSVSPLYECGDNNHLLLVILDHINPMGYRSLTDSQVKEMVKAEVIKDK 588

Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
            AE++ +K N  V   +        +      +  +   +                 V +
Sbjct: 589 KAEQILAKLNG-VTSIAAAKAKGAVVTPVNQVTFASPVFLTATGASEPALS----GAVAA 643

Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSV 606
                    P++      +F+VT   + P     +E +  +         + ++ +
Sbjct: 644 TAKGAFDKTPVKGNAGVYMFQVTGRTMRPVKFNAKETEMRLRQRAMQYAGNFMNQL 699


>gi|209964864|ref|YP_002297779.1| peptidyl-prolyl cis-trans isomerase family protein, putative
           [Rhodospirillum centenum SW]
 gi|209958330|gb|ACI98966.1| peptidyl-prolyl cis-trans isomerase family protein, putative
           [Rhodospirillum centenum SW]
          Length = 433

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 58/454 (12%), Positives = 126/454 (27%), Gaps = 95/454 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V  + +  S  +N  +  L       G     E  +   L  ++L  L+     
Sbjct: 44  ERAAALVNEEVISMSDLMNRLQMALS----SSGLPDTPETRQR--LLPQVLRLLIDEVLQ 97

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q    + +      +   +        + N+ S   F   L   G+             
Sbjct: 98  IQEARRLEIRVTEQDIDRALENL----AQQNRLSLGEFQRLLDASGVPVAS--------- 144

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  ++                         SV +  L  R +      S+  +    E+
Sbjct: 145 LRQQLLA------------------------SVAWSRLVQRRIRPTVSVSDDEVQAQLER 180

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            K N   PEY  +S I   V +   + E+S                              
Sbjct: 181 IKANAGKPEYL-VSEIFLAVDDDANEAEVS------------------------------ 209

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336
            + AD   + +  G  F  +A +  +S        LG   +  + + +L  ++  L + G
Sbjct: 210 -RLADRLVEQIAGGANFGAVARQFSQSAGAFTGGDLGWLQQGQL-EQALDTAVQQL-QPG 266

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM--RITKASEKVKEDYKRLEEF 394
            F+  I G  GY I  + + +     +  +++  +   +        E   E  +++ + 
Sbjct: 267 QFSRPIRGVNGYHILWLRDQRAVAAGNPADIQVAVGQLVLPADPANPEAGLEAARQIAQE 326

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
            A   ++   ++R              G       +  +      +  + G     +   
Sbjct: 327 AASCDALSAAAQR------------IPGAQQGQAPLTRLGDLPAEISSIVGALGVGTPTQ 374

Query: 455 TVALPDGSYMWVQIKESIPA-RDRKLEEVLTDVK 487
                 G  + +     +P       ++V   + 
Sbjct: 375 PFLTDRGIMILMVCDRMVPEGSIPPADQVRDAIA 408


>gi|307132747|ref|YP_003884763.1| peptidyl-prolyl cis-trans isomerase ppiD [Dickeya dadantii 3937]
 gi|306530276|gb|ADN00207.1| Peptidyl-prolyl cis-trans isomerase ppiD [Dickeya dadantii 3937]
          Length = 270

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 73/236 (30%), Gaps = 40/236 (16%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV--DYI 195
              L +  + +        + L+ T      V       L+         +   +    +
Sbjct: 42  RQLLRQLALEQAVMEAARRQSLTATSAQLQQVAQQLAQELVSAGFSADEQQAIVLHHSLM 101

Query: 196 VLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
            L    V A AD P  A + +W+ ++ D +R PE +   ++L  V      +        
Sbjct: 102 ELQLASVGAQADEPQPAEVRRWYRQHADRFRRPEQRLTRHLLLTVDGNRPSV-------- 153

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDIS 311
                                   +Q+ A    Q       F  LA+       +L    
Sbjct: 154 ------------------------DQQVAGMLRQLRADPDGFASLAQRHSHCPTALEGGL 189

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           +G  S+  +   +L   +F+LA  G+ +  +    G  +     I+P+  +   E 
Sbjct: 190 MGWVSRGLLF-PALEHCLFALA-AGELSEPVETELGLHLLRCEAIRPAAPLPEAEA 243


>gi|148284345|ref|YP_001248435.1| putative peptidylprolyl isomerase [Orientia tsutsugamushi str.
           Boryong]
 gi|146739784|emb|CAM79651.1| putative peptidylprolyl isomerase [Orientia tsutsugamushi str.
           Boryong]
          Length = 343

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 6/148 (4%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
            +K +    ++    Y+K     F+ E   +  ++  +Q++A E    L KG+ F +LA+
Sbjct: 133 FKKNVPALKEDEYPFYQKQ----FASEKIKISHILLSSQEKAKEVKDKLSKGESFEKLAK 188

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           E+         G   +++     L + IF++ + G   P+      + +  +++  P   
Sbjct: 189 EESLDKETKENGGLVEQWFFQGDLPEPIFAMQEGGVSEPMQLSKTAWQLIKLNSKVP-HI 247

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYK 389
            S +E+  +    +R  K +  + +   
Sbjct: 248 PSKEEI-NEYTFNLRAEKYAAALYDAAN 274


>gi|117921645|ref|YP_870837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
 gi|117613977|gb|ABK49431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
          Length = 434

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/383 (12%), Positives = 120/383 (31%), Gaps = 73/383 (19%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
              N        L  ++++ L+      Q  + IGL     ++   I           K 
Sbjct: 56  RAANQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KM 111

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN-- 189
           +      ++  EG++  +Y +   + ++  ++        ++ S   +    +   E   
Sbjct: 112 TVAQMQQKIESEGLSFSQYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGM 171

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQ---WFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
           + V+Y  + +  +    +PS+  L           +  ++ E  R + I      K  + 
Sbjct: 172 KDVEY-QIGHILIDVPNNPSSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEG 230

Query: 247 EISN----DELQAEYEK--------------------------NKEKYFSPEIRTV--EQ 274
            I +    +E+   + +                          +     + EI  V    
Sbjct: 231 GIWDYMNINEMPTLFAEVINGAKKGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARH 290

Query: 275 LVFP-----NQKEADEAFQ----SLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321
           ++       ++  A    +     ++ G+ KF  LA +  +     + G    +++  I 
Sbjct: 291 ILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSATKGGELGWAEPSIY 350

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
               A ++ SL+     +     + G+ I  +   +          K D  +Q    +A 
Sbjct: 351 VPEFAQTLNSLS-PDQISEPFRTTHGWHITQLEERR----------KTDATDQFNTNRAH 399

Query: 382 EKV------KEDYKRLEEFLALG 398
           + +      +E    L+E  A  
Sbjct: 400 QLIFRRKFNEELQNWLDEMRADA 422



 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 106/303 (34%), Gaps = 31/303 (10%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             +L+R  +      G+   +L LDQA       + +                 +  L+ 
Sbjct: 75  RLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQKMTVA-------QMQQKIESEGLSF 127

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
                   YR    + I+       + +++I++S  E+    +  +E+        +  +
Sbjct: 128 ------SQYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGMKDVEYQIGHI 181

Query: 276 VF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322
           +              + K A+   + LK G+ F + A         +  G +    I + 
Sbjct: 182 LIDVPNNPSSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINEM 241

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKAS 381
            +L   + + AKKGD    I    G+ I  + + +   T   +EV+   I  +     + 
Sbjct: 242 PTLFAEVINGAKKGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILSE 301

Query: 382 EKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
           ++ K   ++ L++  +     ++++R+    S D       G+    +    +P   Q L
Sbjct: 302 DRAKAMLEQFLKQIRSGEAKFEDLARQY---SEDPGSATKGGELGWAEPSIYVPEFAQTL 358

Query: 441 FRV 443
             +
Sbjct: 359 NSL 361


>gi|307133009|ref|YP_003885025.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Dickeya
           dadantii 3937]
 gi|306530538|gb|ADN00469.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Dickeya
           dadantii 3937]
          Length = 93

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +++A +    L+KG  F QLA++     S      LG F K  +       ++F
Sbjct: 9   HILVDTEQQATDILAQLEKGADFQQLAKKHSTCPSKHNGGDLGEFRKGDMV-PDFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L K       +   FGY I  V
Sbjct: 68  SCELLKP---FGPVKTQFGYHIIKV 89


>gi|306845597|ref|ZP_07478166.1| Chaperone surA precursor [Brucella sp. BO1]
 gi|306273918|gb|EFM55745.1| Chaperone surA precursor [Brucella sp. BO1]
          Length = 311

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 16/160 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E    + +   +  +      S DE Q  YE N+ ++ +  I     ++        EA 
Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTNAPILEASHILIAADPADQEAR 174

Query: 288 QS------------LKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332
            +            + +   F  +A E     S     +LG  ++          ++  +
Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                    I   FG+ I  +        + F  V   IA
Sbjct: 234 TPGETTANPIESRFGFHIVRLDRRVEGEELPFDYVADKIA 273


>gi|242016524|ref|XP_002428837.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative
           [Pediculus humanus corporis]
 gi|212513573|gb|EEB16099.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative
           [Pediculus humanus corporis]
          Length = 121

 Score = 73.5 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA   LK+G KF ++A++  +    +   LG  ++  +      D+
Sbjct: 29  KVRHILCEKQGKCLEALGKLKEGMKFNEVAQQYSEDKARAGGDLGWMTRGSMVGP-FQDA 87

Query: 329 IFSLAKKGDFT-----PVIHGSFGYVIAHVSNIK 357
            F+L      +     P +   FGY I  V   K
Sbjct: 88  AFALPVSSLSSPVFTDPPVKTKFGYHIIMVEGKK 121


>gi|254301623|ref|ZP_04969067.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           406e]
 gi|157810736|gb|EDO87906.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           406e]
          Length = 220

 Score = 73.5 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +    + +  D++ A Y + K K  + E   +  L  P + +A      L +G  F +L
Sbjct: 65  DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 123

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A       S      +G  ++  + DV+  + I ++ K G F+  I GS GY + +V + 
Sbjct: 124 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 181

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     S  ++++ +    R+ K    + E    +
Sbjct: 182 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 216


>gi|85711793|ref|ZP_01042849.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           baltica OS145]
 gi|85694408|gb|EAQ32350.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           baltica OS145]
          Length = 432

 Score = 73.5 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 106/315 (33%), Gaps = 51/315 (16%)

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
            ++  ++ +S  F   +           L  +   E+         ++          G+
Sbjct: 48  EQLIKQVKQSENFSSANAPSDK-----VLRTQA-TERLIQQELQLQMAERM-------GI 94

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             S   LDQA     ++R +    L    + +           W       +R      I
Sbjct: 95  EVSEAQLDQAISRIAQDRGMSVDELRENTINSG--------QSW-----PAFREQIKTEI 141

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQ 280
                +    ++++ ++  E++      ++   SP    + Q++               +
Sbjct: 142 ITSQVERAAVQRRVSVTPQEVENLVNLIEQNDASPTEYRLRQILIGVDSDAPNEKQEAAK 201

Query: 281 KEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           + A      L++G+ F QLA        +L    LG  ++  +P  +L   +     KG+
Sbjct: 202 RRAQAVIDRLEEGEDFSQLAIRSSSGSNALDGGDLGWMTENSMP--TLFAEVVKGKSKGE 259

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKRLE 392
               I    G+ I  V++ +    V  QEVK     I     +   KA E + +  +++ 
Sbjct: 260 IIGPIRSGVGFHILQVADKRGEQVVEVQEVKARHILIKPSVILSDNKAKEMLAQFREQI- 318

Query: 393 EFLALGTSMDEISRR 407
             L+   +  E+++ 
Sbjct: 319 --LSGEKTFAELAKE 331



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/389 (11%), Positives = 111/389 (28%), Gaps = 57/389 (14%)

Query: 60  WKQELGMISQKIGFVVNSERARSVG---LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            + ++  + +++    N   A +     L  +  + L+      Q  E +G+E    ++ 
Sbjct: 43  LESQIEQLIKQVKQSENFSSANAPSDKVLRTQATERLIQQELQLQMAERMGIEVSEAQLD 102

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT-KMLSRTDVVGMFVGGMRPS 175
             I+R      +D   S D         G +   + +    ++++           +  +
Sbjct: 103 QAISRI----AQDRGMSVDELRENTINSGQSWPAFREQIKTEIITSQVERAAVQRRVSVT 158

Query: 176 NL-------LLDQAKRFYFENRSVDYIV-LNNRHVPAIADPSNAVLTQWFE--KYKDNYR 225
                    L++Q      E R    ++ +++       + +        +  +  +++ 
Sbjct: 159 PQEVENLVNLIEQNDASPTEYRLRQILIGVDSDAPNEKQEAAKRRAQAVIDRLEEGEDFS 218

Query: 226 APEYKRIS---------YILFDVHEKEKKIEI-----SNDELQAEY------------EK 259
               +  S               +             S  E+                +K
Sbjct: 219 QLAIRSSSGSNALDGGDLGWMTENSMPTLFAEVVKGKSKGEIIGPIRSGVGFHILQVADK 278

Query: 260 NKEKYFSPEIRTVEQLVFP-----NQKEADEAFQS-----LKKGKKFIQLAEEQGKSLSD 309
             E+    +      ++       +  +A E         L   K F +LA+E       
Sbjct: 279 RGEQVVEVQEVKARHILIKPSVILSDNKAKEMLAQFREQILSGEKTFAELAKEHSADPGS 338

Query: 310 ISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
            S G       PD    +     S  +KG  +      FG+ I  V++ +       +  
Sbjct: 339 ASRGGDLGWSRPDRYAEEFKQRVSTLEKGVISEPFRTQFGWHIVEVTDRRTLDATQ-ESK 397

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLA 396
           +      +   K  E+V    + + +   
Sbjct: 398 RDKAYQMLFSRKYREEVDTWRQEMRDRAY 426


>gi|149191632|ref|ZP_01869876.1| parvulin-like peptidyl-prolyl isomerase [Vibrio shilonii AK1]
 gi|148834532|gb|EDL51525.1| parvulin-like peptidyl-prolyl isomerase [Vibrio shilonii AK1]
          Length = 419

 Score = 73.5 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 111/371 (29%), Gaps = 86/371 (23%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V    +  S   ++ K       +      + E   +  + ++ILD L+      Q  + 
Sbjct: 19  VNDGVILQSDIDSATKTLTANARKN-----DQELPSADIIQEQILDKLILEKLQLQEADR 73

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
           IG+  D  R+   +        K+N  + +     +  EG+  + +         R  + 
Sbjct: 74  IGVRIDDNRLESTLNDI----AKNNNQTIEQLRQTVREEGLTWEAF---------REQIR 120

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
                    + ++  +      E                                     
Sbjct: 121 DEIAASEARNAMVRQRINILPAEV-----------------------------DNLAELL 151

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
           A E                    S+  +  +    + ++   E ++V+      +++A +
Sbjct: 152 AKE--------------------SDATVTYKIRHIQLRFNDGEDKSVQ------EQQAKD 185

Query: 286 AFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
               LK G+ F  +A    K   +L     G   KE +P    AD I  +  KG      
Sbjct: 186 LVARLKSGEDFATMAYTYSKGPKALEGGDWGWMRKEEMP-TIFADQI-KMQTKGTIIGPF 243

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKRLEEFLAL 397
               G+ I  + ++K   TVS  EV      I     +       ++     +++   + 
Sbjct: 244 RSGVGFHILKIEDVKGLETVSVTEVNARHILIKPTVILSDEGVQRELNNIIAKVQ---SG 300

Query: 398 GTSMDEISRRE 408
            ++  E++ + 
Sbjct: 301 ESTFAEMAEQY 311



 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 14/99 (14%)

Query: 272 VEQLVFP---------NQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYIP 321
              ++            Q+E +     ++ G+  F ++AE+  +       G       P
Sbjct: 270 ARHILIKPTVILSDEGVQRELNNIIAKVQSGESTFAEMAEQYSQDPGSAVQGGELGYQTP 329

Query: 322 D---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +         + +L   G  +       G+ I  V + +
Sbjct: 330 ELYVPEFKHQVETLP-IGQISKPFKTVHGWHIVEVLDRR 367


>gi|50121865|ref|YP_051032.1| nitrogen fixation protein [Pectobacterium atrosepticum SCRI1043]
 gi|49612391|emb|CAG75841.1| nitrogen fixation protein [Pectobacterium atrosepticum SCRI1043]
          Length = 265

 Score = 73.5 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 239 VHEKEKKIEI-SNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-QKEADEAFQSL------ 290
           +    +++ + ++ E++  Y ++  ++  PE R    L+    + +++   + L      
Sbjct: 97  LASISEQVAVPTSAEVEQWYRRHAARFCRPEQRLTRHLLLTTGEDDSEAISRQLLALRRQ 156

Query: 291 --KKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
                  F  LAE   +   +L    LG  S+  +   SL  ++F+L + G+ + +I   
Sbjct: 157 LQSDTAAFATLAERHSQCPTALEGGLLGWVSRGLLF-TSLDQALFTLHE-GELSAIIETD 214

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            G+ +     I+P   ++ ++      + + + +  E+ ++   +L
Sbjct: 215 IGWHLLLCEAIRPETPMAQEDALAKAYDHLLLQRQKEQQRQWLVQL 260


>gi|170725378|ref|YP_001759404.1| SurA domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169810725|gb|ACA85309.1| SurA domain [Shewanella woodyi ATCC 51908]
          Length = 434

 Score = 73.5 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/345 (9%), Positives = 103/345 (29%), Gaps = 65/345 (18%)

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  + S+ A    L  ++++ L+      Q  + IGL     ++   I            
Sbjct: 59  GQALPSDSA----LRTQVIERLIMTRLQMQMADRIGLHIGDLQLDQTIGNIAKEQNLT-- 112

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENR 190
              D    ++A EG++  +Y +   + ++  ++        ++ S   ++   +   E +
Sbjct: 113 --VDQMQLKIAEEGMSWNQYREQLREEITLGEIQRIQVQRRIQVSPQEINSLVK-MIEEK 169

Query: 191 SVDYIVL-------------NNRHVPAIADPSNAVLTQWFEKYKDNYRAPE--------- 228
            +  +               N+  + + +  +  VL +  +    ++R            
Sbjct: 170 GLQEVEFQIGHILIEVPSSPNSEQLASASKRAETVLKRVKDG--ADFRRTAIAASSGPKA 227

Query: 229 -------YKRISYILFDVHEKEKKIEISNDE----------LQAEYEKNKEKYFSPEIRT 271
                  Y  ++ +     E     +  +            +    +    +    +   
Sbjct: 228 LEGGVWDYMNVNEMPTLFAEVLGNAKPGDVIGPIRSGAGFHIIKVLDARGLQTKEIDEVR 287

Query: 272 VEQLVFP-----NQKEADEAFQSLKK-----GKKFIQLAEEQGKSLSDISLGS---FSKE 318
              ++       +++ A        K        F  LA +  +     + G    ++  
Sbjct: 288 SRHILIKPSPILSEERAKAMLDKFVKEIRTGDADFAALARQYSEDPGSGAKGGELGWADP 347

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            +   + A ++ +L +  + +     S G+ I  +   + +    
Sbjct: 348 SVYVPAFAQTLNAL-ELNEISEPFRSSHGWHIVQLEERRKTDATD 391



 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 80/237 (33%), Gaps = 18/237 (7%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ- 280
           + YR    + I+       + +++I++S  E+ +  +  +EK        +  ++     
Sbjct: 128 NQYREQLREEITLGEIQRIQVQRRIQVSPQEINSLVKMIEEKGLQEVEFQIGHILIEVPS 187

Query: 281 -----------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328
                      K A+   + +K G  F + A         +  G +    + +  +L   
Sbjct: 188 SPNSEQLASASKRAETVLKRVKDGADFRRTAIAASSGPKALEGGVWDYMNVNEMPTLFAE 247

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKED 387
           +   AK GD    I    G+ I  V + +   T    EV+   I  +     + E+ K  
Sbjct: 248 VLGNAKPGDVIGPIRSGAGFHIIKVLDARGLQTKEIDEVRSRHILIKPSPILSEERAKAM 307

Query: 388 YKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
             + ++E          ++R+    S D       G+         +P   Q L  +
Sbjct: 308 LDKFVKEIRTGDADFAALARQY---SEDPGSGAKGGELGWADPSVYVPAFAQTLNAL 361


>gi|115371844|ref|ZP_01459157.1| peptidyl-prolyl cis-trans isomerase D [Stigmatella aurantiaca
           DW4/3-1]
 gi|115371079|gb|EAU70001.1| peptidyl-prolyl cis-trans isomerase D [Stigmatella aurantiaca
           DW4/3-1]
          Length = 334

 Score = 73.5 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 76/230 (33%), Gaps = 25/230 (10%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-EADEAF 287
            + +   L     +EK   ++ +++ A YE NK ++ SP       L+ P  +  AD A 
Sbjct: 108 KRAMVQRLLHKEFEEKAAPVTPEDIAAYYEMNKAEFVSPARWRYSHLLVPAPQGSADRAA 167

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---------------------VSLA 326
           +         +  + Q                 PD                       +A
Sbjct: 168 KKKLAQALLEKARKLQPLDFDGFDALGGEASGNPDTKPASADTHLVTAEELKERLGPEVA 227

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            +   L + GD + V+    G+ +  +++++P        V   + +++   +    V  
Sbjct: 228 AAAGKLQRVGDTSAVVESPKGFHLLKLTDLRPERNQPLDAVSSMLRSRIARERRDASVSA 287

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
              +L+E     T   + +  EK+        + +   V G   A  P +
Sbjct: 288 YTVKLQEQAQFKT---DTAALEKLQVNIQAPQEASSGPVPGYLPAPQPVR 334


>gi|239818232|ref|YP_002947142.1| SurA domain protein [Variovorax paradoxus S110]
 gi|239804809|gb|ACS21876.1| SurA domain protein [Variovorax paradoxus S110]
          Length = 469

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/403 (12%), Positives = 117/403 (29%), Gaps = 69/403 (17%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +  +            +++ I     +ER     L + +L+ L+S     Q 
Sbjct: 66  VALVNSEPITNTEVQ-------SRVTRLIRENAEAERVPRAELTRLVLERLISERAQLQL 118

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            ++ G++ D   +            + N+ S +    R+  EGI+++E+ +     L  T
Sbjct: 119 AKENGIKVDEVAIDQAEQTV----ARQNQISVEELRRRVVAEGISQREFRNDLRDQLLLT 174

Query: 163 DVVGM-FVGGMRPSNLLLDQ----AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            +        ++ S+   D+     +    ++ ++  I L +  V    + + A +    
Sbjct: 175 RLRDREVESKVKISDAEADEYLRDQRNAPTKDAALQNINLAHLLVAVPENATEAQVATLQ 234

Query: 218 ----------------------------------------EKYKDNYRAPEYKRISYILF 237
                                                   ++Y   +           + 
Sbjct: 235 QRAQGLAQRARAGEDFAKLVQENSDSPDRANGGAVGMRTADRYPSLFVEATQSTPVNGIA 294

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------- 290
                     +     +A+           ++R +  L  P +  A    Q         
Sbjct: 295 GPIRSGAGFHVLKVLAKAQLGATDATVTQTQVRHILLLNDPKRTTAQAVAQLAEFKRRLQ 354

Query: 291 KKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            +   F  LA +  +  S      LG  S+         +++  LA  G  +  +   FG
Sbjct: 355 ARTADFAGLARDNSQDASAKEGGDLGW-SRPGQFVPEFEEAMDRLA-PGQISDPVVSRFG 412

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
             +  V   + S      E ++     +R  +  E      + 
Sbjct: 413 VHLIQVVGRRESKLTQ-AEQREAARAVLREQRVEEAFSTWVQE 454



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/368 (12%), Positives = 103/368 (27%), Gaps = 39/368 (10%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
           R  +      G++   + +DQA++       +    L  R V                  
Sbjct: 113 RAQLQLAKENGIKVDEVAIDQAEQTVARQNQISVEELRRRVVAEGIS------------- 159

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE---KYFSPEIRTVEQLVF 277
           +  +R     ++        E E K++IS+ E        +    K  + +   +  L+ 
Sbjct: 160 QREFRNDLRDQLLLTRLRDREVESKVKISDAEADEYLRDQRNAPTKDAALQNINLAHLLV 219

Query: 278 PNQKEADEA------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS- 324
              + A EA             Q  + G+ F +L +E   S    + G+           
Sbjct: 220 AVPENATEAQVATLQQRAQGLAQRARAGEDFAKLVQENSDSPDRANGGAVGMRTADRYPS 279

Query: 325 -LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              ++  S    G     I    G+ +  V              +  + + + +      
Sbjct: 280 LFVEATQSTPVNG-IAGPIRSGAGFHVLKVLAKAQLGATDATVTQTQVRHILLLNDPKRT 338

Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +   +L EF   L     + +   +  S D       G     +    +P  E+ + R
Sbjct: 339 TAQAVAQLAEFKRRLQARTADFAGLARDNSQDASA-KEGGDLGWSRPGQFVPEFEEAMDR 397

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
           +        +     +       +Q+     ++     E     +   +  +  E  S+ 
Sbjct: 398 L-----APGQISDPVVSRFGVHLIQVVGRRESKL-TQAEQREAARAVLREQRVEEAFSTW 451

Query: 503 ANQLVLEY 510
             +     
Sbjct: 452 VQETRARA 459


>gi|110636616|ref|YP_676823.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279297|gb|ABG57483.1| peptidyl-prolyl cis-trans isomerase (survival protein) [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 452

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 83/246 (33%), Gaps = 34/246 (13%)

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA---KRFYFENRSVD 193
           ++  +     + +  +   T  +    +  + +  M  +  ++D     +    +     
Sbjct: 50  YLQFMR----SPEAQMMQTTDDIKCRVLESLIINKMLLARAVMDSVTVEREIINQQIDRR 105

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA---PEYKRISYILFDVHEKEKKIEISN 250
                          + A L  ++ K  D  +    P+ +               + I+ 
Sbjct: 106 M------DYFIQQFGTVAKLESYYNKSIDQLKEELYPQIRDQMVTQKMQDNITAGVTITP 159

Query: 251 DELQAEYEK---NKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLKKGKKFIQ 298
           ++++  Y+    +   YFS E+   + +  P          +++ +E  Q +  G+ F +
Sbjct: 160 NDVKKFYKALPADSLPYFSSEVEVGQIIRLPEINRQDQLKFKQKLEEIRQRVASGEDFCR 219

Query: 299 LAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           LA++  +          +G F K  +      ++  S  + G  + VI   +GY I  + 
Sbjct: 220 LAKQFSQDPVSAKNCGEIGFFKKGELVPEY--EAAASKLQPGQTSGVIETQYGYHIVQLI 277

Query: 355 NIKPSF 360
             + + 
Sbjct: 278 ERRGAE 283



 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 60/437 (13%), Positives = 119/437 (27%), Gaps = 84/437 (19%)

Query: 21  LFVPFLIWGLSDALFSVSG---SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           LFV F+   +++  F  +       V  V  Q V  S    S+ Q +     ++    + 
Sbjct: 10  LFVFFVF--VTNYHFCAAQQVIDKIVAKVDNQIVLKSEVEISYLQFMRSPEAQMMQTTDD 67

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-ARSPLFHGKDNKFSH-- 134
                  +  ++L++L+    L        +  +   +  +I  R   F  +    +   
Sbjct: 68  -------IKCRVLESLIINKMLLARAVMDSVTVEREIINQQIDRRMDYFIQQFGTVAKLE 120

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS---------NLLLDQAKRF 185
             +   + +    ++E        +    +      G+  +          L  D    F
Sbjct: 121 SYYNKSIDQL---KEELYPQIRDQMVTQKMQDNITAGVTITPNDVKKFYKALPADSLPYF 177

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY--KRISYILFDVHEKE 243
             E      I L   +             Q  E+ +    + E   +       D    +
Sbjct: 178 SSEVEVGQIIRLPEINRQDQLK-----FKQKLEEIRQRVASGEDFCRLAKQFSQDPVSAK 232

Query: 244 KKIEI---SNDELQAEYEKNKEKYFSP------------------EIRTVE----QLVFP 278
              EI      EL  EYE    K                      E R  E     ++  
Sbjct: 233 NCGEIGFFKKGELVPEYEAAASKLQPGQTSGVIETQYGYHIVQLIERRGAEYNTRHILIK 292

Query: 279 NQKEADEA-----------FQSLKKGKKFIQLAEEQGKSLSDISLGSF------SKEYIP 321
               + +             + LK    F + A+           G            I 
Sbjct: 293 PASSSKDLIYPTLFLDSLRLEILKDSISFAKAAKNYSSDKQTAFNGGMLSDPESGSSRIA 352

Query: 322 DVSLADSIFSL---AKKGDFTPVIH-----GSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
              L  +IF +    K G+ +         G+    I +  N  P+   + ++  + I +
Sbjct: 353 QEDLPPAIFFVIDTMKIGEISMPAKFTMEDGTEAVRIVYFKNKIPAHQANLKDDYQKIYS 412

Query: 374 QMRITKASEKVKEDYKR 390
                K +  V E + +
Sbjct: 413 AALEEKKNNAVNEWFDK 429


>gi|324513446|gb|ADY45525.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Ascaris
           suum]
          Length = 125

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
            V  ++   Q +A EA + LK G KF ++A    +    S   LG  ++  +   +  D+
Sbjct: 33  KVRHILCEKQSKALEAMEKLKSGMKFNEVAANYSEDKARSGGDLGWMTRGSMVG-AFQDA 91

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L      K     P +   FGY I  V   K
Sbjct: 92  AFALPTSTVDKPVYTDPPVKTQFGYHIIMVEGKK 125


>gi|254498443|ref|ZP_05111173.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella
           drancourtii LLAP12]
 gi|254352330|gb|EET11135.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella
           drancourtii LLAP12]
          Length = 421

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/398 (12%), Positives = 112/398 (28%), Gaps = 77/398 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S            +  +    +  +      + K++L +L+     
Sbjct: 15  DKVVAVVNNSVITASELDKQVAMAKKQLLAQ-RIQLPPDSV----VRKQVLQHLIDVDLQ 69

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G+  D   +   I R    +              + ++G+   EY ++  K +
Sbjct: 70  LQMAKQHGISVDDTELTQAIERIAAANHAT----LSQMREEIVKQGMGWNEYRENIRKEM 125

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             +++                                   + V      +N  + Q+   
Sbjct: 126 ILSNLQQ---------------------------------KAVGHDVMITNEQVEQYL-- 150

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            K     P  +                E +  +++                         
Sbjct: 151 -KTEGDLPVDRTHLTYHLQNIVIPLNDEPTPAQMK-----------------------KA 186

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           Q  A +   S+KKG  F ++A E+     +L    LG      +P++  A  + ++ K G
Sbjct: 187 QAIAAQILISIKKGADFNRVAVEKSTGDFALDSGDLGERHLAELPEL-FAKEVVNM-KVG 244

Query: 337 DFTPVIHGSFGYVIAHVSNI---KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                +    G  +  +  I   +    V+   V+  I  +       E VK+    + +
Sbjct: 245 QVAGPLRAGNGLQLIKLVAIGGEQQQHMVTLTHVR-HILLKPDANMLPEDVKKQVNNIYQ 303

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
            L  G    +++++  +           G    G+ V 
Sbjct: 304 QLKAGKDFAKMAKQYSLDPGSAVKGGDLGWVTPGELVP 341



 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 16/134 (11%)

Query: 271 TVEQLVFP---------NQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSK 317
            V  ++            +K+ +  +Q LK GK F ++A+    + G ++    LG  + 
Sbjct: 277 HVRHILLKPDANMLPEDVKKQVNNIYQQLKAGKDFAKMAKQYSLDPGSAVKGGDLGWVTP 336

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             +       ++  LA     +  +   FG+ +  V   K     +    K+ I   +  
Sbjct: 337 GELV-PEFEKTMNKLALN-QVSQPVKTQFGWHLIEVLGRKQQDDST-AFKKQQIRQFLHQ 393

Query: 378 TKASEKVKEDYKRL 391
            K +E V+   + +
Sbjct: 394 RKFAEAVQNWQQHI 407


>gi|104781902|ref|YP_608400.1| peptidylprolyl isomerase [Pseudomonas entomophila L48]
 gi|95110889|emb|CAK15605.1| putative Peptidylprolyl isomerase [Pseudomonas entomophila L48]
          Length = 318

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 13/178 (7%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E   +   L  V +       S+ EL+  YE  K     P    + Q+    +   D+  
Sbjct: 123 EQIVLRDYLESVSKVPDDYP-SDAELKQAYEAGKAGLQLPARYRLSQIFLRVENPKDDEA 181

Query: 288 QSLK----------KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS--IFSLAKK 335
              +              F  LA E  +     + G  +        L +   + S  K 
Sbjct: 182 VRKQAQALAKQAQASDADFAALAREHSQDAGTAANGGDTGLQALAQLLPEVRGVVSRLKA 241

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           G  +  +  + GY I  +   +P+   +F EV   +   +R  +  +  K   + + +
Sbjct: 242 GTVSEPVQSAAGYHIVKLVEQQPARAATFDEVAPRLRQLLRAQRQEQVAKAYVEGMFD 299


>gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl cis-trans isomerase [Herbaspirillum
           seropedicae SmR1]
 gi|124483574|emb|CAM32660.1| Parvulin-like peptidyl-prolyl [Herbaspirillum seropedicae]
 gi|300072826|gb|ADJ62225.1| parvulin-like peptidyl-prolyl cis-trans isomerase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/417 (12%), Positives = 117/417 (28%), Gaps = 63/417 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S +V V  + +      +     +  +S +   +   ++       +++++ ++     
Sbjct: 90  DSIMVVVNNEVITRQEVADRLASVVKRMSAQNVQLPPRDQLV-----RQLVERMIVERAQ 144

Query: 100 DQFIEDIGLEADHGRVWGEIA--------RSPLFHG--KDNKFSHDVFVSRLAREGI--- 146
            Q  ++ G+  D   +   +             F    +    ++  F   + RE +   
Sbjct: 145 AQMAKENGIVVDDAMLDRAMQRIADQNKLSMAQFRTRLEAEGMNYASFREEIRREILSQR 204

Query: 147 ------------NEKEYIDHYTKMLS----RTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
                        E E  ++     +    R ++    +    P N   DQ  +      
Sbjct: 205 LREREVDNKVVVTESEVDNYLAAEANAGGQRQELDIAQILIRVPENATPDQLAQRRERAE 264

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI---- 246
            V   +         A   +           D    P  +     L  V + +       
Sbjct: 265 DVLRQLKTGADFAKTAAAYSDASDAL--SGGDLGWRPADRLPQLFLDGVAKLQDGQVSGL 322

Query: 247 -------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK-- 292
                   I     +   +  +    + +   V  ++          EA      LK+  
Sbjct: 323 LKSGNGFHILKLVGRRTADGAQAAAPAVQQTHVRHILIKVNQVVTAAEAKRKLTELKERL 382

Query: 293 ---GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
                 F +LA+     LS      LG              ++  L K G+ +  I   F
Sbjct: 383 DHGSATFEELAKLYSNDLSASKGGDLGWVYPGDTV-PEFERAMDQL-KPGEVSQPIETPF 440

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
           GY +  V   K     S +  ++     +R  K  E  ++  +++ +   +    DE
Sbjct: 441 GYHLIQVVERKTDDA-SKERARQAARQAIRERKIDEATEDWMRQIRDRAYVEYRNDE 496



 Score = 66.9 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/379 (11%), Positives = 109/379 (28%), Gaps = 48/379 (12%)

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
               +++ R  V        + + +++D A       R  D   L+        +     
Sbjct: 129 QLVRQLVERMIVERAQAQMAKENGIVVDDAMLDRAMQRIADQNKLSMAQFRTRLEAE--- 185

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
                     ++R    + I        E + K+ ++  E+              +   +
Sbjct: 186 -----GMNYASFREEIRREILSQRLREREVDNKVVVTESEVDNYLAAEANAGGQRQELDI 240

Query: 273 EQLVFPN------------QKEADEAFQSLKKGKKFIQ---LAEEQGKSLSDISLGSFSK 317
            Q++               ++ A++  + LK G  F +      +   +LS   LG    
Sbjct: 241 AQILIRVPENATPDQLAQRRERAEDVLRQLKTGADFAKTAAAYSDASDALSGGDLGWRPA 300

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-------- 369
           + +P +   D +  L + G  + ++    G+ I  +   + +                  
Sbjct: 301 DRLPQL-FLDGVAKL-QDGQVSGLLKSGNGFHILKLVGRRTADGAQAAAPAVQQTHVRHI 358

Query: 370 --DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
              +   +   +A  K+ E  +RL+       + +E+++      +        G    G
Sbjct: 359 LIKVNQVVTAAEAKRKLTELKERLD---HGSATFEELAKLYS-NDLSASKGGDLGWVYPG 414

Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
             V         L        P      +  P G ++   ++       +  E      +
Sbjct: 415 DTVPEFERAMDQLK-------PGEVSQPIETPFGYHLIQVVERKTDDASK--ERARQAAR 465

Query: 488 KDWKTVKTAEEVSSKANQL 506
           +  +  K  E       Q+
Sbjct: 466 QAIRERKIDEATEDWMRQI 484


>gi|73538831|ref|YP_299198.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
 gi|72122168|gb|AAZ64354.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
          Length = 250

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 75/223 (33%), Gaps = 38/223 (17%)

Query: 206 ADPSNAVLTQWFEKYKD---------------NYRAPEYKRISYI-------LFDVHEKE 243
            + ++  + +  ++++D                    E +R+             +    
Sbjct: 8   VELTDDDIEREMDQHRDARNPAHMATVSAILRRLMRTEAERLGIAGGDTDDDALALALLA 67

Query: 244 KKIEISNDEL---QAEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLK--K 292
            +  + + +    +  Y+   +++   E   VE ++F      P     + A Q+L   K
Sbjct: 68  HEAPVPDADESSCRRHYDSRPDRFREGEWVEVEHILFQVTPRVPLDALREVALQTLALIK 127

Query: 293 G--KKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGY 348
           G    F   A+      S    G   + +  +       ++FS   +G    ++   FG 
Sbjct: 128 GDPSSFASHAQALSNCPSGAGGGRLGRVFRGETAPEFERAVFSAPVQGLLPQLVETRFGL 187

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            I  V +      + F  V+ DIA+ +    A ++  + Y  L
Sbjct: 188 HIVRVLDRCDGTRLPFDMVRADIAHALTAA-ARDRAWKQYASL 229


>gi|149197709|ref|ZP_01874759.1| hypothetical protein LNTAR_20788 [Lentisphaera araneosa HTCC2155]
 gi|149139279|gb|EDM27682.1| hypothetical protein LNTAR_20788 [Lentisphaera araneosa HTCC2155]
          Length = 767

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 123/354 (34%), Gaps = 34/354 (9%)

Query: 213 LTQWF--EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
           L  ++  E  K  +  P   ++S +         ++ +S++E++A+Y+KN EKY   +I+
Sbjct: 343 LQAFYNNEDNKRQFLIPRSLQLSLVSLSPSTLYSEVAVSDEEIKADYDKNIEKYKVAQIK 402

Query: 271 TVEQ-LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLAD 327
           + E  +   + K    A  +LK  K  +    +  +     +  +     E++ +     
Sbjct: 403 STEYAITAKDDKSLAAAETTLKAIKDLVDSKAKNLEEELKKNADIKKTDTEWLSENENNK 462

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           S+F +AK G  T +      +    +   +      F E  K+I+  +   KAS K +  
Sbjct: 463 SLFVIAK-GQTTAIEANELKFTFTLIKEKRDE--TPFAEASKEISASITHAKASTKARLA 519

Query: 388 YKRLEEFLALGTS--------MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP----- 434
            ++L+ F++            + E +  +       PL   +G     +    +      
Sbjct: 520 AEKLQSFISSNRGNENFFNLFLTEAASHQFNERKLQPLTPQSGNQQSMQLAMQLLQQGYT 579

Query: 435 ----YKEQLLFRVFGKDDPLSKDHTVA----LPDGSYMWVQIKESIPARDRKLEEVLTDV 486
               + +Q   +V      LS    V+      +G   ++ ++  +P+     E   + +
Sbjct: 580 PPGGFSQQAFAQVGQMLSALSASRPVSDPSVTENGDIQYLLVEREVPSSYVPFERAKSSI 639

Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR-----DIGKNLGASLLTTNQIN 535
                  +      +KA+    E  K              +    +     Q  
Sbjct: 640 AFQVANAQGKVLAKAKADSSKTELEKAEDTGAFFKANSFAEEQSITPENKAQFT 693


>gi|294650562|ref|ZP_06727919.1| peptidyl-prolyl cis-trans isomerase SurA [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823559|gb|EFF82405.1| peptidyl-prolyl cis-trans isomerase SurA [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 437

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/426 (11%), Positives = 118/426 (27%), Gaps = 72/426 (16%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           K  +       L  L         S   F+      V  V    +  S  +    +    
Sbjct: 4   KHFQHIFRATVLAALISS------SMHSFAQPADEVVAIVDSSVILKSDLVQGIAEAEHQ 57

Query: 67  ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA------ 120
           +  +   V   +  +      ++LD L+      + ++  G++ D   +   +       
Sbjct: 58  LKAQNQTVPPKQYLQM-----QVLDQLIIRQAQLEQVKRYGIKPDENSLNAAVLRVANQS 112

Query: 121 ---RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV------------ 165
                  F  K +  +   + +   R  I E   I    +    + +             
Sbjct: 113 GSNSLSAFQQKLDAIAPGTYENL--RNRIAEDLAIGRLRQQQVMSRIKISDHDVENFLKS 170

Query: 166 --GMFVGGMRP-------SNLLLDQAKRFYFENR-----SVDYIVLNNRHVPAIADPSNA 211
             G    G +        S    ++ ++   E R     S D   ++++          A
Sbjct: 171 PEGQAALGTQVHVLHMRISGTNNNEVQKVAEEVRRSLATSNDPKAISSKLSTGTVTVDGA 230

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE--LQAEYEKNKEKYFSPEI 269
            +      ++     P           V +    + + +    L+    K  ++      
Sbjct: 231 DM-----GFRALSEIPTELAARVTPLQVGQTTGLVNVRDGTHVLKLLERKQNDQRALVPQ 285

Query: 270 RTVEQLVFPN---------QKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFS 316
                ++            ++  D  +  +K G+ F  LA     + G +    +LG  +
Sbjct: 286 YKTRHILIQTSEVVSSDRAKQMIDSLYNRIKAGEDFSTLAATFSNDPGSARDGGNLGWVN 345

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
              +        +      G  +      FG+ I  V++ +        E ++ +A Q+ 
Sbjct: 346 ASVMV-PEFEK-VMKEIPVGQLSEPFQSQFGWHILEVTDTRQQDMTK--EAQERMARQIL 401

Query: 377 ITKASE 382
             +  E
Sbjct: 402 GERQFE 407



 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 61/185 (32%), Gaps = 9/185 (4%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEAD 284
            ++       +   +I+IS+ +++   +  + +        V  +          QK A+
Sbjct: 142 DLAIGRLRQQQVMSRIKISDHDVENFLKSPEGQAALGTQVHVLHMRISGTNNNEVQKVAE 201

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIH 343
           E  +SL        ++ +       +         + ++    +   +  + G  T +++
Sbjct: 202 EVRRSLATSNDPKAISSKLSTGTVTVDGADMGFRALSEIPTELAARVTPLQVGQTTGLVN 261

Query: 344 GSFGYVIAHVSNIKPSFTVSFQ-EVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSM 401
              G  +  +   K +   +   + K   I  Q     +S++ K+    L   +  G   
Sbjct: 262 VRDGTHVLKLLERKQNDQRALVPQYKTRHILIQTSEVVSSDRAKQMIDSLYNRIKAGEDF 321

Query: 402 DEISR 406
             ++ 
Sbjct: 322 STLAA 326


>gi|167577892|ref|ZP_02370766.1| peptidylprolyl isomerase [Burkholderia thailandensis TXDOH]
          Length = 265

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 18/172 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------ADEAFQSLKKGKKF 296
           + ++D+ +  Y  +  ++   +I     ++F                    ++    + F
Sbjct: 89  QPTHDDCERYYRNHAARFRRHDIVHASHILFAVTDATPLALLRREAEAALARARAAPQTF 148

Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             LA E      S    +LG   +          ++F   + G    +++  FG+ I  +
Sbjct: 149 ETLARELSNCPSSAVGGNLGQLLRGDSV-PEFDAAVFDTPELGVLPRLVNTRFGFHIVRI 207

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
               P   V F  V  DIA  +   +   K  + Y  +   LA G  ++ ++
Sbjct: 208 ERRVPGDPVPFDAVAADIAAFLA-QRVRHKAIQQYVTI---LASGARIEGVA 255


>gi|116495203|ref|YP_806937.1| parvulin-like peptidyl-prolyl isomerase [Lactobacillus casei ATCC
           334]
 gi|191638713|ref|YP_001987879.1| Protein maturation protease (Peptidylprolyl isomerase)
           [Lactobacillus casei BL23]
 gi|227534778|ref|ZP_03964827.1| peptidylprolyl isomerase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239632085|ref|ZP_04675116.1| protein maturation protease [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|116105353|gb|ABJ70495.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus casei ATCC
           334]
 gi|190713015|emb|CAQ67021.1| Protein maturation protease (Peptidylprolyl isomerase)
           [Lactobacillus casei BL23]
 gi|227187534|gb|EEI67601.1| peptidylprolyl isomerase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239526550|gb|EEQ65551.1| protein maturation protease [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|327382753|gb|AEA54229.1| Peptidyl-prolyl cis-trans isomerase [Lactobacillus casei LC2W]
 gi|327385940|gb|AEA57414.1| Peptidyl-prolyl cis-trans isomerase [Lactobacillus casei BD-II]
          Length = 300

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 80/235 (34%), Gaps = 32/235 (13%)

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVD-YIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           V    G     +   D  K+      ++   IVL           S+  +   F   K  
Sbjct: 25  VANMKGAKVTKDEYYDAMKKTTTGQATLRNMIVLKALEQQYPNKVSDKKVNSQFNTLKKQ 84

Query: 224 Y-----RAPEY---------KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           Y        E           +I   L+     +   + +  ++ A+++K + K      
Sbjct: 85  YGSSFDTTLEQNGYTESSFKDQIRTTLYSEVALKALKKPTEKQIAAQWKKYQPKIT---- 140

Query: 270 RTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKSLSDISLG-----SFSKEYIP 321
             V+ ++   + EA +     +K    K F  LA++          G       + +   
Sbjct: 141 --VQHILVKTEDEAKQIISDYQKDPTEKNFEALAKKNSIDTGTKDKGGKLTAFDNTDTSL 198

Query: 322 DVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           D +   + F L K GD T   +   +GY +  V ++      + +E KKD+ NQ+
Sbjct: 199 DSTFKKAAFKLTKAGDITTTPVKTQYGYHVIRVISV--GKKGTMKEHKKDLENQL 251


>gi|310824216|ref|YP_003956574.1| ppic-type peptidyl-prolyl cis-trans isomerase [Stigmatella
           aurantiaca DW4/3-1]
 gi|309397288|gb|ADO74747.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stigmatella
           aurantiaca DW4/3-1]
          Length = 329

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 76/230 (33%), Gaps = 25/230 (10%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-EADEAF 287
            + +   L     +EK   ++ +++ A YE NK ++ SP       L+ P  +  AD A 
Sbjct: 103 KRAMVQRLLHKEFEEKAAPVTPEDIAAYYEMNKAEFVSPARWRYSHLLVPAPQGSADRAA 162

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---------------------VSLA 326
           +         +  + Q                 PD                       +A
Sbjct: 163 KKKLAQALLEKARKLQPLDFDGFDALGGEASGNPDTKPASADTHLVTAEELKERLGPEVA 222

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            +   L + GD + V+    G+ +  +++++P        V   + +++   +    V  
Sbjct: 223 AAAGKLQRVGDTSAVVESPKGFHLLKLTDLRPERNQPLDAVSSMLRSRIARERRDASVSA 282

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
              +L+E     T   + +  EK+        + +   V G   A  P +
Sbjct: 283 YTVKLQEQAQFKT---DTAALEKLQVNIQAPQEASSGPVPGYLPAPQPVR 329


>gi|225025209|ref|ZP_03714401.1| hypothetical protein EIKCOROL_02106 [Eikenella corrodens ATCC
           23834]
 gi|224941967|gb|EEG23176.1| hypothetical protein EIKCOROL_02106 [Eikenella corrodens ATCC
           23834]
          Length = 288

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 82/244 (33%), Gaps = 10/244 (4%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR-HVPAIADPSNAVLTQWF 217
           +      G           +  +        +    + LN       I + +        
Sbjct: 43  IINEQSNGQVTDSPELRENIARRLVTRELMIQESRRLRLNESPEFKQIIERARTDARTSG 102

Query: 218 EKYKDNYRAP-EYKRISYILFDV-HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           E  K  +R   E    +     +     +   ++  ++Q  Y++   +Y   +   + ++
Sbjct: 103 EDRKPTFRQDWETFEGNVTAQALVAHILRSNPVTEAQVQQAYQEITNRYRGTQEVKLGEI 162

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD-------S 328
           +  N+  A +A   L++G++F  +A +        + G  S  + P   L +       +
Sbjct: 163 ILNNRDNAQKAVADLRRGRRFTDVARQYTIDTPSRANGGISPTFTPLKDLEEGAPMVYNA 222

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           + SL +       +  +  + I ++   +P     F ++K  I   ++     +++   Y
Sbjct: 223 VKSLGQGKFTETPVESNGIFAIFYMEAKRPVRVPPFAQLKPQIQQDLQNLLIEQEIARLY 282

Query: 389 KRLE 392
           ++  
Sbjct: 283 QQAN 286



 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 57/164 (34%), Gaps = 12/164 (7%)

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRIT---KASEKVKEDYKRLEEFLAL---GTSMD 402
            I   + +  +      +  ++I N+ R T   K  E +  +    ++ +A    G    
Sbjct: 128 HILRSNPVTEAQVQ---QAYQEITNRYRGTQEVKLGEIILNNRDNAQKAVADLRRGRRFT 184

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
           +++R+    +ID P     G       +  +     +++             T    +G 
Sbjct: 185 DVARQY---TIDTPSRANGGISPTFTPLKDLEEGAPMVYNAVKSLGQGKFTETPVESNGI 241

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
           +    ++   P R     ++   +++D + +   +E++    Q 
Sbjct: 242 FAIFYMEAKRPVRVPPFAQLKPQIQQDLQNLLIEQEIARLYQQA 285


>gi|254194298|ref|ZP_04900730.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           S13]
 gi|169651049|gb|EDS83742.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           S13]
          Length = 229

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 6/155 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +    + +  D++ A Y + K K  + E   +  L    + +A      L +G  F +L
Sbjct: 74  DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVSGEADALRLRNQLIQGASFGEL 132

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A       S      +G  ++  + DV+  + I ++ K G F+  I GS GY + +V + 
Sbjct: 133 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 190

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     S  ++++ +    R+ K    + E    +
Sbjct: 191 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 225


>gi|194364448|ref|YP_002027058.1| SurA domain [Stenotrophomonas maltophilia R551-3]
 gi|194347252|gb|ACF50375.1| SurA domain [Stenotrophomonas maltophilia R551-3]
          Length = 447

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/407 (10%), Positives = 108/407 (26%), Gaps = 70/407 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    +  S    +          +   +   +      L +++L+ LV     
Sbjct: 33  DRIAAVVDEDVILQSELQRAIANIKAQYVGRENQLPPEDV-----LSRQVLERLVLVKLQ 87

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +  G+      +   +        + N  + D    RLA +GI+  ++       +
Sbjct: 88  VARAQGSGIRVGDQELNQAMNAI----AQQNGSTLDALRQRLAHDGIDFNDFRASVRDEI 143

Query: 160 SRTDVVGMFVGG-MRPSNLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPS----N 210
           +   +   F    +  S   +D    Q      +      ++       A    +     
Sbjct: 144 TVQRLRQSFAQSRISVSEGEVDAALKQQATVGNQYHLAHILIAVPDGANADQIATGQKKA 203

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEI 269
             +    +K + ++ A     + Y       +   +   S DE+   + +  EK  + E+
Sbjct: 204 DGVKALLDKGELDFNA---AAVRYSDSPNALEGGDLGWRSLDEIPQAFAQMMEKMKAGEV 260

Query: 270 ------------------RTVE--------------QLVF---------PNQKEADEAFQ 288
                             R                  ++            + + D    
Sbjct: 261 VGPIRGPSGFQLLKLVEVRDASAAAGANTVTEYHGRHILVRVDDHQTDAAAKAKIDTLRA 320

Query: 289 SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            +  G  F  +A+E  +  +       LG F  +     +    +  + + G  +     
Sbjct: 321 RIAGGADFQTVAKESSEDSNSKGQGGDLGWFPADAF-GPAFGQQVAGI-QDGGVSQPFRT 378

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             G+ I      + +   +    +  +   +   K  ++     + L
Sbjct: 379 DAGWHILQRVATRQTDVTN-DNQRAQVRETIGRRKLEDEYNRFLQEL 424



 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 55/393 (13%), Positives = 116/393 (29%), Gaps = 51/393 (12%)

Query: 142 AREGINEKEYIDHY---TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
               +  ++ +        +L +  V      G+R  +  L+QA     +        L 
Sbjct: 63  RENQLPPEDVLSRQVLERLVLVKLQVARAQGSGIRVGDQELNQAMNAIAQQNGSTLDALR 122

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
            R      D ++             +RA     I+         + +I +S  E+ A  +
Sbjct: 123 QRLAHDGIDFND-------------FRASVRDEITVQRLRQSFAQSRISVSEGEVDAALK 169

Query: 259 KNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQSLKKGK-KFIQLA---EE 302
           +            +  ++               QK+AD     L KG+  F   A    +
Sbjct: 170 QQA---TVGNQYHLAHILIAVPDGANADQIATGQKKADGVKALLDKGELDFNAAAVRYSD 226

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
              +L    LG  S + IP  + A  +  + K G+    I G  G+ +  +  ++ +   
Sbjct: 227 SPNALEGGDLGWRSLDEIP-QAFAQMMEKM-KAGEVVGPIRGPSGFQLLKLVEVRDASAA 284

Query: 363 SFQEVKKD-----IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           +      +     I  ++   +     K     L   +A G     +++           
Sbjct: 285 AGANTVTEYHGRHILVRVDDHQTDAAAKAKIDTLRARIAGGADFQTVAKESS------ED 338

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
            +  G+        A  +      +V G  D            G ++  ++       D 
Sbjct: 339 SNSKGQGGDLGWFPADAFGPAFGQQVAGIQDG-GVSQPFRTDAGWHILQRVA--TRQTDV 395

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
             +     V++     K  +E +    +L  E 
Sbjct: 396 TNDNQRAQVRETIGRRKLEDEYNRFLQELRGEA 428


>gi|293602043|ref|ZP_06684498.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
 gi|292819573|gb|EFF78599.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
          Length = 93

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              +   ++   + + +E   +++ G  F Q+A+E     S     +LG+F    +    
Sbjct: 2   AQASARHILVSTEAKCNELKTAIENGADFAQVAKENSSCPSSRDGGNLGTFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A  G     +   FGY +  V++ +
Sbjct: 61  FDTVVFS-APVGVVQGPVKTQFGYHLVEVTSRQ 92


>gi|225628752|ref|ZP_03786786.1| Chaperone surA precursor [Brucella ceti str. Cudo]
 gi|260167067|ref|ZP_05753878.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella sp. F5/99]
 gi|261756460|ref|ZP_06000169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99]
 gi|225616598|gb|EEH13646.1| Chaperone surA precursor [Brucella ceti str. Cudo]
 gi|261736444|gb|EEY24440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99]
          Length = 311

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285
           E    + +   +  +      S DE Q  YE N+ ++ S  I     ++        E  
Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174

Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332
                     A   + +   F  +A E     S     +LG  ++          ++  +
Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                    I   FGY I  +        + F  V   IA
Sbjct: 234 TPGETTANPIENRFGYHIVRLDRRVEGEELPFDYVADKIA 273


>gi|126445541|ref|YP_001062970.1| rotamase [Burkholderia pseudomallei 668]
 gi|126225032|gb|ABN88537.1| peptidylprolyl isomerase [Burkholderia pseudomallei 668]
          Length = 220

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 6/155 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +    + +  D++ A Y + K K  + E   +  L  P + +A      L +G  F +L
Sbjct: 65  DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 123

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A       S      +G  ++  + D +  + I ++ K G F+  I GS GY + +V + 
Sbjct: 124 AMRFSTDASRDSGGDIGWVAQGVLSDEA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 181

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     S  ++++ +    R+ K    + E    +
Sbjct: 182 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 216


>gi|83717644|ref|YP_439449.1| peptidylprolyl isomerase [Burkholderia thailandensis E264]
 gi|83651469|gb|ABC35533.1| peptidylprolyl isomerase [Burkholderia thailandensis E264]
          Length = 250

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 18/172 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------ADEAFQSLKKGKKF 296
           + ++D+ +  Y  +  ++   +I     ++F                    ++L   + F
Sbjct: 74  QPTHDDCERYYRNHAARFRRHDIVHASHILFAVTDATPLALLRREAEAALARALAAPQTF 133

Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             LA E      S    +LG   +          ++F   + G    +++  FG+ I  +
Sbjct: 134 ETLARELSNCPSSAVGGNLGQLLRGDSV-PEFDAAVFDTPELGVLPRLVNTRFGFHIVRI 192

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
               P   V F  V  DIA  +   +   K  + Y  +   LA G  ++ ++
Sbjct: 193 ERRVPGDPVPFDAVAADIAAFLA-QRVRHKAIQQYVTI---LASGARIEGVA 240


>gi|325523743|gb|EGD02000.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           TJI49]
          Length = 261

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 18/172 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSL-KKGKKF 296
           E    + +  Y ++  ++   +I     ++F           ++ A+ A   +      F
Sbjct: 85  EPDRADCERYYAQHPARFRRNDIVYASHVLFAVTDRVPLAPLRQRAEAALADVVAAPDTF 144

Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             +A       S     SLG   +          ++F     G    +++  FG+ I  +
Sbjct: 145 EAVARASSNCPSAQLGGSLGQLLRGDTV-PEFEAALFDSDGIGVLPKLVNTRFGFHIVRI 203

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
               P  TV F E    IA  +   +  E+    Y  +   LA    ++ ++
Sbjct: 204 ERRVPGDTVPFDEAAAQIAAHL-SARVRERAMRQYVAI---LAGKAHLEGVA 251


>gi|260584542|ref|ZP_05852288.1| foldase protein PrsA [Granulicatella elegans ATCC 700633]
 gi|260157565|gb|EEW92635.1| foldase protein PrsA [Granulicatella elegans ATCC 700633]
          Length = 316

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 28/172 (16%)

Query: 229 YKRISYI-LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---- 283
           Y+   Y+        +K    S++E+Q  Y+  + K         + ++    + A    
Sbjct: 108 YRDTVYLNKLITAAVKKSTTFSDEEVQKYYDSWEPKAT------AQHILIGVSQNASDEE 161

Query: 284 --------DEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFS 331
                   ++  + LK G  F  LA+E         +   +G F +  +     AD+ + 
Sbjct: 162 KAEAKKKAEDLIKQLKDGADFDTLAKENSTDKTSAENGGKIGPFKRSDMVK-EFADAAYG 220

Query: 332 LAKKGDFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           L K G+ T   +   +GY +  + +       S  +V+  + +++   K  +
Sbjct: 221 L-KVGEITEEPVLTQYGYHVIKLVD--KPEKGSLSDVRSTLEDELLAEKLKD 269


>gi|325268744|ref|ZP_08135372.1| hypothetical protein HMPREF9141_0581 [Prevotella multiformis DSM
           16608]
 gi|324988912|gb|EGC20867.1| hypothetical protein HMPREF9141_0581 [Prevotella multiformis DSM
           16608]
          Length = 474

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 61/400 (15%), Positives = 125/400 (31%), Gaps = 64/400 (16%)

Query: 250 NDELQAEYEKNKEKYFSPE-IRTVEQLVF------------PNQKEADEAFQSLKKGKKF 296
             E +  Y   + +  +   +     ++               ++ AD  + +L+KG  F
Sbjct: 107 EAEARKIYRDTRRQIEANGGLWHCAHILVGMRQRASKEEENAARQLADSLYTALQKGADF 166

Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            +LA++         +   L    K          ++ +L K G+ +  +   FGY I  
Sbjct: 167 TELAKKYSTDTRSAKNGGDLPGLQKGQTV-AEFEKAMLAL-KPGETSRPVLSPFGYHIIK 224

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           +   +      +  ++ DI   + +    +++                +D +++      
Sbjct: 225 MIGHEE--LPPYDSLRADIMQYIEMRGLRDQIISQR------------LDSLAQA----- 265

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV---QIK 469
                         GKEV      ++ L  +  KD  L K       DG  M     +  
Sbjct: 266 -------------GGKEVTQEQILDRKLAELEEKDADL-KHLVREYHDGLLMVEMSNRTV 311

Query: 470 ESIPARDRK-LEEVLTDVKKDWKTVK-----TAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
               A+D   LE      +K +K  +      A  V  +A+   ++   +G  F    + 
Sbjct: 312 WDKAAKDETALEAYYRKHRKQYKWAEPRFKGIAYHVKKQADVDAVKACVKGLPFSKWAER 371

Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
           L  +      I R+  E   F     + +               G  Y +  V   K+  
Sbjct: 372 LRDTFNKDGNI-RIRVEKGIFRKGDNALIDREIFGQETAATPVEG--YPIDAVFGKKIKA 428

Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
            +  D     +      +L    +A L+ +Y V V   ++
Sbjct: 429 PEGLDDVRDLVISDYQGELEKEWVASLRRKYKVVVDKAVL 468


>gi|311106144|ref|YP_003978997.1| PPIC-type PPIASE domain-containing protein 2 [Achromobacter
           xylosoxidans A8]
 gi|310760833|gb|ADP16282.1| PPIC-type PPIASE domain protein 2 [Achromobacter xylosoxidans A8]
          Length = 253

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSL-KKGKKFIQLAEEQ 303
           +  Y+ + +++ + E+   + ++F           +  A+     L +   +F ++A EQ
Sbjct: 79  RRYYQMHPQRFMAGELIEADHILFQVTPGVNLDMLRAHANVVLAELLEDPSRFAEVAREQ 138

Query: 304 GKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
               S     SLG   +          ++F+L   G    ++    G  I  V+      
Sbjct: 139 SNCPSAALGGSLGQLGRGDTV-PEFERAVFALPAGGLLPQLLETRHGLHIVRVTRRIEGR 197

Query: 361 TVSFQEVKKDIANQM 375
              ++ V   IA  +
Sbjct: 198 MQPYEHVAAQIATAL 212


>gi|257456351|ref|ZP_05621548.1| basic membrane protein [Treponema vincentii ATCC 35580]
 gi|257446437|gb|EEV21483.1| basic membrane protein [Treponema vincentii ATCC 35580]
          Length = 360

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/407 (13%), Positives = 132/407 (32%), Gaps = 99/407 (24%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSV---GRQKVPFSSFINSWKQELGMISQKIG 72
           +  +++ +   I       F+ +    +  V   GR  +         K  +  + ++IG
Sbjct: 5   VITLLIALSLSI-----GAFAQTNLQPIAEVKLTGRAPITLGQL----KTRVSALEKEIG 55

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW------------GEIA 120
             +           ++ LD L++   + Q  E  G++     V              +I+
Sbjct: 56  RKMTFAE------RQQTLDGLINERLIVQAAEKDGIKIMDSEVNNYFNEYVSSQLGQQIS 109

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
            +        K +  +     A+ G+   E+       L+                    
Sbjct: 110 EADFAKLIKEKTNMSLDEYMKAQNGMTLAEFKSFLRTQLTAQ------------------ 151

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
               +  + +         + + +I  P++  +  ++E  K ++  P+  ++  ++    
Sbjct: 152 ---AYVMQKKQ--------KELQSIPSPTDEQIRSYYEVNKQSFVQPDTVQLFLVVAPKG 200

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI--- 297
           +K    E +  ++Q +   N +   + +IRT  Q          E   + + G+ F+   
Sbjct: 201 DKPSAAEKTIKDIQKKLTANPKD--TADIRTKSQ----------EKNSTYQAGEIFVSKT 248

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            LA EQ     D  L                IF++ K G+ +P+   +  Y    V   K
Sbjct: 249 SLAAEQLGIPMDELL---------------KIFNM-KVGEVSPITETAVNYQCFVVIEKK 292

Query: 358 PSFTVSFQEVKKD---------IANQMRITKASEKVKEDYKRLEEFL 395
            +  +   +V +          I   + + + +E + +    +   L
Sbjct: 293 DAKILGLSDVVEPGGNVSLYEYIKKMVIMQRQNEALNDALVSVTNEL 339


>gi|224098208|ref|XP_002194667.1| PREDICTED: putative peptidyl-prolyl cis-trans isomerase
           NIMA-interacting 4 variant 1 [Taeniopygia guttata]
          Length = 137

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++      A EA + LK G++F ++A +  +  +     LG  ++  +      ++
Sbjct: 45  QVRHILCEKHGRAMEAMEKLKSGQRFSEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 103

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L      K     P +   FGY I  V   K
Sbjct: 104 AFALPVSSMDKPVYTDPPVKTKFGYHIIMVEGRK 137


>gi|167828135|ref|ZP_02459606.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 9]
          Length = 190

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 18/172 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQS-LKKGKKF 296
           E + D  +  Y  +  ++   +I     ++F           ++EA+      L + + F
Sbjct: 14  EPTRDACERYYLNHAARFRRRDIVYASHILFAVTDATPLAPLRREAEATLARVLAEPQTF 73

Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
              A E      +    SLG   +          ++F     G    +++  FG+ I  +
Sbjct: 74  EARARELSNCPSAQVGGSLGQLLRGDSV-PEFDAAVFDTTDSGVLPRLVNTRFGFHIVRI 132

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
               P   V F  V  +IA  +   +   K  + Y  +   LA G  ++ ++
Sbjct: 133 ERRVPGDPVPFDAVAAEIAAFLA-ERVRHKAIQQYVTI---LASGARIEGVA 180


>gi|296134356|ref|YP_003641603.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola sp. JR]
 gi|296032934|gb|ADG83702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola potens
           JR]
          Length = 183

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 13/153 (8%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
            L ++ +  ++        S   S  V +V    +    F   +K  L         + +
Sbjct: 12  LLGLIILVSIVV---FLTKSNGSSDKVATVNGVSISKQEFNKQYKMILSYYETIARKLSD 68

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
            E     GL +++L  LV  A + Q  +   +      V   I++   F G     +  +
Sbjct: 69  KE---KKGLQEEVLARLVDKAIILQEAQKRNIVVTDEEVNKYISQ--KFKG-----NKKL 118

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
               L    +  K+Y +      +R  +  +  
Sbjct: 119 QDEYLKERSLTLKDYKEVVRYQKTREKLYDIVT 151


>gi|189183869|ref|YP_001937654.1| protein export protein PrsA precursor [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180640|dbj|BAG40420.1| protein export protein PrsA precursor [Orientia tsutsugamushi str.
           Ikeda]
          Length = 343

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 63/148 (42%), Gaps = 6/148 (4%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
            +K +    ++    Y+K     F+ E   +  ++  +Q++A E    L KG+ F +LA+
Sbjct: 133 LKKNVPALKEDEYPFYQKQ----FASEKVKISHILLNSQEKAKEVKDKLSKGESFEKLAK 188

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           E+         G   + +     L +SIF++ + G   P+      + +  +++  P   
Sbjct: 189 EESLDKETKENGGLVEHWFFQGDLPESIFAMQEGGVSEPMQLSKTAWQLIKLNSKVP-HI 247

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYK 389
            S +E+  +    +R+ K +  + +   
Sbjct: 248 PSKEEI-NEYTFNIRVKKYARDLYDAAN 274


>gi|88813287|ref|ZP_01128526.1| peptidyl-prolyl cis-trans isomerase C [Nitrococcus mobilis Nb-231]
 gi|88789459|gb|EAR20587.1| peptidyl-prolyl cis-trans isomerase C [Nitrococcus mobilis Nb-231]
          Length = 131

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 5/113 (4%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
            V  ++ P+++   E  + +  G+ F  LA+      S      LG F    +      +
Sbjct: 5   HVRHILVPDEQRCRELKERIDNGEDFATLAKRFSHCPSGHHGGDLGEFGAGRMV-PQFDE 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
             F   +       +   FGY +  V +           +++     +R  +A
Sbjct: 64  VAFE-GELNKVHGPVRTQFGYHLIEVLSRGERKDSPIAVLRRKCQASLRACQA 115


>gi|219849264|ref|YP_002463697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aggregans DSM 9485]
 gi|219543523|gb|ACL25261.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aggregans DSM 9485]
          Length = 515

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/411 (13%), Positives = 111/411 (27%), Gaps = 86/411 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV--------NSERARSVGLDKKILD 91
           S  V  VG   +  S +   W+++    +++I            N + A+       ++D
Sbjct: 65  SRPVAQVGSITLTRSDY---WREQRLAYARQIYQNFQLLDLFGNNPQIAQQFQGRSIVID 121

Query: 92  NLV--------SGATLDQFIEDI---------GLEADHGRVWGEIARSPLFHGKDNKFSH 134
             +        +  T+ ++I+           G+      +         F         
Sbjct: 122 QQIRTLRRAEINEQTVSEWIDRQIKQRASTEFGITIGDDEIMQTAVADLAF--------- 172

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
            +F+  L                  +    V                             
Sbjct: 173 -IFLPALPEPTPTPD-------ANATPVPTVDPSATATPEPTATPSPTPGGPTPTPEPSP 224

Query: 195 IVLNNRHVPAIADPSNAVLT--QWFEKYKDNY--------RAPEYKRISYILFDVHEKEK 244
            ++          P  A +   Q  ++    Y          PE  +  + +  + +   
Sbjct: 225 TLIPTSTPVPTPLPEEARVQFDQIVDEIYRRYELELIVSETKPELSKEEFRMALMEQYRD 284

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------------EADEA 286
           ++     + Q   E        PE  T  Q++   +                    A E 
Sbjct: 285 RLLNERIQAQLVPEDGFTYSTEPERVTARQILIAVKPPAEATPEQIEAAFAAALPTAQEL 344

Query: 287 FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPD------VSLADSIFSLAKKG 336
              L+ G  F  LA E+            +GSF +    D        L  + F+L    
Sbjct: 345 VTQLRNGADFAALAAERSDDPGSRDNGGDIGSFDRNGFADNGATYPPELVAAAFALP-VN 403

Query: 337 DFTPVIHGSFGYVIAHVSN-IKPSFTVSFQEVKKDIANQ-MRITKASEKVK 385
             +  +   FG+ I  V+N I PS     Q+ +    ++ +   +A   ++
Sbjct: 404 QISDPVRTQFGWHILEVTNRIVPSEADQLQKARTKALDEWIAEQRAKADIR 454


>gi|229589919|ref|YP_002872038.1| putative peptidylprolyl isomerase [Pseudomonas fluorescens SBW25]
 gi|229361785|emb|CAY48667.1| putative peptidylprolyl isomerase [Pseudomonas fluorescens SBW25]
          Length = 313

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 87/266 (32%), Gaps = 33/266 (12%)

Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
           +   N           L++  V+             ++Q  R   E       +L+   V
Sbjct: 76  QLRGNRGALETWIRSRLAQKAVLEQADAQGWRQRPEVEQQTRAATEQIVFRDYMLSVSQV 135

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
           PA   PS A L Q ++  K  +  P   R+S I    ++ +    +              
Sbjct: 136 PADY-PSAAELQQAYDSGKAQWVTPPLYRVSQIFLAANDPQTLDTV-------------- 180

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
                  R  ++L            ++      F  LA +  +     + G  S      
Sbjct: 181 ------RRQAQELS----------RRAQAAPGDFAALATQFSQDTDSAARGGDSGMQPLQ 224

Query: 323 VSLAD--SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
             + +  S  S  K G  + V+  + G+ +  ++  +P+ T +  E+++ +   +R  + 
Sbjct: 225 QLVPEVRSAVSRLKVGAVSDVVQSAAGFHVLKLTGQQPARTATLDELRERLTQALRAQRQ 284

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISR 406
            +  K   + +     L     E+++
Sbjct: 285 EQIAKAYLEGMLNTATLSIDGAELNK 310


>gi|227114356|ref|ZP_03828012.1| peptidyl-prolyl cis-trans isomerase C [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 93

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   ++EA++    L+KG  F +LA++     S      LG F K  +   +   ++F
Sbjct: 9   HILVDTEQEANDILAQLEKGADFQKLAQKHSTCPSKRNGGDLGEFRKGDMV-PAFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L K       +   FGY +  V
Sbjct: 68  SCELLKP---FGPVKTQFGYHVIKV 89


>gi|58337850|ref|YP_194435.1| peptidylprolyl isomerase [Lactobacillus acidophilus NCFM]
 gi|58255167|gb|AAV43404.1| PrtM precursor [Lactobacillus acidophilus NCFM]
          Length = 300

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 79/238 (33%), Gaps = 28/238 (11%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +++              + L +       E +   Y              S+  + + + 
Sbjct: 41  ITQQQYYDEMKKSQAGKSTLANMIINRALEQQYGKY-------------VSSKKVDKQYN 87

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSP-----EIR 270
            YK  Y +     +          ++ ++   +S   L+   +  K++            
Sbjct: 88  NYKKQYGSQFSAVLQQNGMTASSFKENLKTNLLSEQALKHIKKITKKQEQQAWKSYQPKV 147

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-----GSFSKEYIPDVSL 325
           TV+ ++   +  A +  + LK GK F  LA++     +  +         S +   D + 
Sbjct: 148 TVQHILVAKKSTAQDIIKQLKDGKSFSSLAKKYSLDTATKNKAGKLPSFDSTDNTLDSAF 207

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             + F L      +  +    GY +  + N  P+    F + KK I +++  + A ++
Sbjct: 208 KTAAFKLKTGEVTSTPVKSQSGYHVIKMIN-HPAKGK-FADHKKAIDDEIYASMAQDQ 263



 Score = 40.4 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 69/233 (29%), Gaps = 40/233 (17%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           +   +STV S    K+    +                     +  +     K  L N++ 
Sbjct: 26  NSGSNSTVASYKGGKITQQQYY--------------------DEMKKSQAGKSTLANMII 65

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L+Q     G      +V     +   +  +        F + L + G+    + ++ 
Sbjct: 66  NRALEQQ---YGKYVSSKKVDK---QYNNYKKQYGS----QFSAVLQQNGMTASSFKENL 115

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
              L     +       + +     QA + Y    +V +I++  +        +   + +
Sbjct: 116 KTNLLSEQALKHIK---KITKKQEQQAWKSYQPKVTVQHILVAKKS-------TAQDIIK 165

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
             +  K      +   +     +   K    + +++ L + ++    K  + E
Sbjct: 166 QLKDGKSFSSLAKKYSLDTATKNKAGKLPSFDSTDNTLDSAFKTAAFKLKTGE 218


>gi|91227110|ref|ZP_01261594.1| survival protein SurA [Vibrio alginolyticus 12G01]
 gi|269964662|ref|ZP_06178900.1| survival protein SurA [Vibrio alginolyticus 40B]
 gi|91188762|gb|EAS75049.1| survival protein SurA [Vibrio alginolyticus 12G01]
 gi|269830561|gb|EEZ84782.1| survival protein SurA [Vibrio alginolyticus 40B]
          Length = 427

 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/378 (15%), Positives = 122/378 (32%), Gaps = 88/378 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    V  S    + K       Q  G  + S       L +++++ L+     
Sbjct: 25  DKVAVIVNDGVVLQSDIETAMKTLQANARQS-GKSLPSTSV----LKEQVVEKLIIDTLQ 79

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG+  D  R+   IA       ++N+ S +   + +  EG++  E+ +   K +
Sbjct: 80  GQEADRIGVRIDDNRLNQAIAEI----ARNNEQSVEQLAASVESEGLSYPEFREQIRKEI 135

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFE 218
           + ++     V                    R ++ +      +    +  +NA +     
Sbjct: 136 AASEARNALV-------------------RRRINILPAEVDSLAEQLSQETNATVQ---- 172

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                       +I +I     + ++K  +  +                           
Sbjct: 173 -----------YKIGHIQLRFSDDKEKSAVEAE--------------------------- 194

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            +  A +    L +G  F ++A       K+L     G   KE +P    AD I  +  K
Sbjct: 195 AKALAKK----LNEGADFTEMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNK 248

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKR 390
           G          G+ I  + ++K   TV+  EV      I     +    A +++ E  +R
Sbjct: 249 GSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGAKKQLNEFVRR 308

Query: 391 LEEFLALGTSMDEISRRE 408
           ++   A   +  +++ + 
Sbjct: 309 IK---AGEATFAQLATQY 323


>gi|254470940|ref|ZP_05084343.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp.
           JE062]
 gi|211960082|gb|EEA95279.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp.
           JE062]
          Length = 295

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 66/174 (37%), Gaps = 21/174 (12%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E+++D     E   I  ++    ++      S DE    YE NK ++ S  I     ++F
Sbjct: 91  EQHEDGSETEEDAAIRELI---EQEVDIPSASQDECLRYYENNKSRFSSEPIYEASHILF 147

Query: 278 ---PNQKEADEAFQSLK---------KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPD 322
              P+Q  A    ++           K + F  LA E     S     +LG  +K     
Sbjct: 148 AAGPDQLTARSIAKARAHDVIKLLQDKPETFADLAMEYSACPSKETGGNLGQLTKGSTV- 206

Query: 323 VSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
                ++ S+ + G  +   I   FGY I  ++      T+ F+ V++ I   +
Sbjct: 207 PEFEVALQSM-QAGQLSEHPIETKFGYHIIFLNRKIDGNTLPFEHVEETIRAWL 259


>gi|188591256|ref|YP_001795856.1| peptidyl-prolyl cis-trans isomerase (ppiase), involved in
           maturation of outer membrane proteins [Cupriavidus
           taiwanensis LMG 19424]
 gi|170938150|emb|CAP63136.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Cupriavidus
           taiwanensis LMG 19424]
          Length = 489

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 89/321 (27%), Gaps = 72/321 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +     ++   +    +    G      RA  +G   ++L+ LV     
Sbjct: 78  DEVVAVVNNSVITRRELLDRADEIESQLRA--GGRPVPARADLLG---EVLERLVMERVQ 132

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G+      V   I        + N+ +      R+   G+   +Y D   K  
Sbjct: 133 TQAAQDAGIRVTDQEVDRAIESV----AQQNQMNAAELRRRVEASGMTWTKYRDELRKQ- 187

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                                           V  I L  R V +     +  +  +   
Sbjct: 188 --------------------------------VQVIRLREREVDSKVQVYDGEIDNY--- 212

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                           L     +      +       Y   +     PE  +  Q     
Sbjct: 213 ----------------LAARGGQGAAAGPTE------YNMAQILVRVPENASDAQKQ-AL 249

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           + +A+   +  + G  F QLA+      ++    ++G      +P +  A+++  L   G
Sbjct: 250 RAKAEGLLKQAQDGADFAQLAQASSEGPEAAQGGAMGFREIGRLPAL-FANAVVDLQPGG 308

Query: 337 DFTPVIHGSFGYVIAHVSNIK 357
               VI  + G+ +  +   +
Sbjct: 309 VAPQVIESAAGFHVIKLVAKR 329


>gi|52424684|ref|YP_087821.1| SurA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306736|gb|AAU37236.1| SurA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 353

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/358 (10%), Positives = 101/358 (28%), Gaps = 86/358 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V +V    +  S    +                  ++A +     K LD ++    +
Sbjct: 65  EQVVATVDGTPILESQLKRAL----------------GKQANNATNRAKALDKIIDDMLV 108

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            + +++  +    G++   +          N  ++   +  L  +GI   ++ ++    L
Sbjct: 109 QKAVKEANVHISEGQLDKIVENIAA----QNNMTYGQLLDALDYQGIGITKFRNNIRNQL 164

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
              +V        +  +   ++   +   E           +     A  +         
Sbjct: 165 MMAEVRNRSIGKNIDVTREQVETLSKQMLEQ---------AKTQGKKAQVTGTE------ 209

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                       ++ +IL  ++      +                               
Sbjct: 210 -----------YQVRHILLKLNPLLNDAQ------------------------------- 227

Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLA 333
            + + ++    ++ GK  F   A++  K      +   LG ++   I D +    I +  
Sbjct: 228 AKAQLNQICSDIQSGKTTFAAAAKDYSKDYLSGANGGDLG-YAFPEIYDPAFGQVIKA-T 285

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           KKG  +      FG+ I  V++ +          ++     +   +  +  K+  K L
Sbjct: 286 KKGVISAPFKTQFGWHILEVTDTRQGDMTE-AAYRQKAYETLVNQQLQDDAKDWVKAL 342


>gi|307720301|ref|YP_003891441.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978394|gb|ADN08429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 92

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++  ++++ +E    ++ G  F ++A+      S      LG F    +       
Sbjct: 5   TARHILVDSEEKCNELKTEIENGADFGEVAQANSSCPSSRNGGDLGQFGPGQMV-PEFDK 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           ++FS    G     I   FGY +  V+  
Sbjct: 64  AVFS-GDVGVVYGPIQTQFGYHLLEVTGR 91


>gi|332995558|gb|AEF05613.1| peptidyl-prolyl cis-trans isomerase C [Alteromonas sp. SN2]
          Length = 92

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +KEA    + LKKGK F  LA+      S      LG F +  +   +  D +F
Sbjct: 8   HILVKTEKEAFAILEQLKKGKDFSTLAKRHSTCPSGKKGGDLGEFRRGQMVK-AFDDVVF 66

Query: 331 SLAKKGDFTPVIHGSFGYVIAH 352
              +       +   FGY +  
Sbjct: 67  K-KEVLKVHGPVKTRFGYHLIK 87


>gi|304382089|ref|ZP_07364600.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
 gi|304336687|gb|EFM02912.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
          Length = 473

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/376 (11%), Positives = 95/376 (25%), Gaps = 84/376 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            +   SV  + +         K ++ M+ Q+ G     +       D  I + L      
Sbjct: 41  DNNPASVIDEVIWVVGDEPILKSDVEMMRQQ-GEAEGMKFPGDP--DCSIPEQLAVQKLF 97

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLF--HGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
                   +      +   I +   +      ++   + +           K+ I    +
Sbjct: 98  LHQAALDSISVTETEINQSIDQQINYWIQMIGSREKLEEYR----------KQSITQIRQ 147

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            L                +    Q      E             +      +   +  +F
Sbjct: 148 ELH--------------DDFKNRQMIHKMREK------------LVEGISVTPGEVRAYF 181

Query: 218 EKYKDNYR--APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
                +     P    +  I       +++I    DEL+                     
Sbjct: 182 RDMPKDSIPFVPTEVEVQIITRTPKIPQEEINRVKDELRQY------------------- 222

Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
                       + + KG+  F  LA    E+ G +     L    +  + D + A   F
Sbjct: 223 -----------TERVNKGETSFATLARLYSEDPGSARQGGELDYTGRGML-DPAFASVAF 270

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +L      + V+   FGY I  + + +         V+  +   +   K  +        
Sbjct: 271 NLTDPKKISKVVETEFGYHIIQLIDKRGDKVK----VRHILKKPVVSQKGIDDAILHLDS 326

Query: 391 L-EEFLALGTSMDEIS 405
           +  +      + DE +
Sbjct: 327 IGSDIRNGKFTFDEAA 342


>gi|53722410|ref|YP_111395.1| rotamase [Burkholderia pseudomallei K96243]
 gi|52212824|emb|CAH38856.1| putative rotamase [Burkholderia pseudomallei K96243]
          Length = 244

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 6/155 (3%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +    + +  D++ A Y + K K  + E   +  L    + +A      L +G  F +L
Sbjct: 89  DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVSGEADALRLRNQLIQGASFGEL 147

Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A       S      +G  ++  + DV+  + I ++ K G F+  I GS GY + +V + 
Sbjct: 148 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 205

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     S  ++++ +    R+ K    + E    +
Sbjct: 206 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 240


>gi|17989299|ref|NP_541932.1| peptidyl-prolyl cis-trans isomerase C [Brucella melitensis bv. 1
           str. 16M]
 gi|256043213|ref|ZP_05446151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|260564427|ref|ZP_05834912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. 16M]
 gi|265989641|ref|ZP_06102198.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|17985164|gb|AAL54196.1| peptidyl-prolyl cis-trans isomerase c [Brucella melitensis bv. 1
           str. 16M]
 gi|260152070|gb|EEW87163.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. 16M]
 gi|263000310|gb|EEZ13000.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 271

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285
           E    + +   +  +      S DE Q  YE N+ ++ S  I     ++        E  
Sbjct: 75  ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 134

Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332
                     A   + +   F  +A E     S     +LG  ++          ++  +
Sbjct: 135 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 193

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                    I   FGY I  +        + F  V   IA
Sbjct: 194 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 233


>gi|307319050|ref|ZP_07598480.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306895157|gb|EFN25913.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
          Length = 289

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 70/190 (36%), Gaps = 9/190 (4%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            +    + F V +  +  E +  EL+  YE N+ ++ +P   + +Q+ F  +  AD A +
Sbjct: 95  RRLAQKLRFIVEDTAQLAEPTEAELRQLYEANRSRFETPGRLSFKQIYFDPEHRADAAAE 154

Query: 289 ------SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
                  L    +    ++              +   +     A  +F++ + G +   +
Sbjct: 155 AKTVLTELNALGESEPASDRLLLGNRFDDASELAISGMFGADFAREVFAV-EPGQWRGPV 213

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
              +G  +  V     +    F+ VK D+  + R  K +E  ++    L +    G  ++
Sbjct: 214 KSGYGLHLVFVMQRTATTPKPFETVKGDVLAEWRRLKQTELSRDFLAALRKKY--GVELE 271

Query: 403 EISRREKIVS 412
           +  +     +
Sbjct: 272 DGVKAALASA 281


>gi|327292088|ref|XP_003230752.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like, partial [Anolis carolinensis]
          Length = 116

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q  A EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 24  KVRHILCEKQSRALEALEKLKAGMRFSEVASQYSEDKARQGGDLGWMARGSMVGP-FQEA 82

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L      K     P +   FGY I  V   K
Sbjct: 83  AFALPVSSMDKPVYTDPPVKTKFGYHIIMVEGRK 116


>gi|327184064|gb|AEA32511.1| peptidylprolyl isomerase [Lactobacillus amylovorus GRL 1118]
          Length = 301

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 82/255 (32%), Gaps = 28/255 (10%)

Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
             G +      +    +++              + L +       E +   Y        
Sbjct: 25  SNGGSNSTVASYKGGKITQQQYYDEMKKSQAGKSTLANMIINRALEQQYGKY-------- 76

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEK 259
                 S+  + + +  YK  Y +     +          ++ ++   +S   L+   + 
Sbjct: 77  -----VSSKKVDKQYNNYKKQYGSQFSAVLQQNGMTASSFKENLKTNLLSEQALKHIKKI 131

Query: 260 NKEKYFS-----PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-- 312
           +K++            TV+ ++   +  A    + LK GK F  LA++     +  +   
Sbjct: 132 SKKQEQQVWKSYQPKVTVQHILVAKKSTAQSIIKQLKDGKSFKSLAKKYSLDTATKNKAG 191

Query: 313 ---GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
                 S +   D S   + F L      +  +    GY +  + +  P+    F + KK
Sbjct: 192 KLPAFDSTDNTLDSSFKTAAFKLKTGEVTSTPVKSQSGYHVIKMIS-HPAKGK-FADHKK 249

Query: 370 DIANQMRITKASEKV 384
            I +++  + A ++ 
Sbjct: 250 TIDDEIYASMAQDQA 264



 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 48/168 (28%), Gaps = 33/168 (19%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           +   +STV S    K+    +                     +  +     K  L N++ 
Sbjct: 26  NGGSNSTVASYKGGKITQQQYY--------------------DEMKKSQAGKSTLANMII 65

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L+Q     G      +V     +   +  +        F + L + G+    + ++ 
Sbjct: 66  NRALEQQ---YGKYVSSKKVDK---QYNNYKKQYGS----QFSAVLQQNGMTASSFKENL 115

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
              L     +       + S     Q  + Y    +V +I++  +   
Sbjct: 116 KTNLLSEQALKHIK---KISKKQEQQVWKSYQPKVTVQHILVAKKSTA 160


>gi|251787801|ref|YP_003002522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya zeae
           Ech1591]
 gi|271502416|ref|YP_003335442.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech586]
 gi|247536422|gb|ACT05043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya zeae
           Ech1591]
 gi|270345971|gb|ACZ78736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech586]
          Length = 93

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +++A +    L+KG  F QLA++     S      LG F K  +       ++F
Sbjct: 9   HILVDTEQQATDILAQLEKGADFQQLAKKHSTCPSKRNGGDLGEFRKGDMV-PDFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L K       +   FGY I  V
Sbjct: 68  SCELLKP---FGPVKTQFGYHIIKV 89


>gi|170748998|ref|YP_001755258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655520|gb|ACB24575.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 277

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 19/158 (12%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----------ADEAFQSLKKGKK 295
           E + +E +  + +N  ++ SP+I  V  ++F  + +           A+     L+    
Sbjct: 99  EPTEEECRRYHARNLARFRSPDIFEVSHILFSARADEASSFALARLNAETVIAMLRTDPD 158

Query: 296 -FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGYVI 350
            F +LA       S     SLG  ++         D++  +   G  +   +   +G+ +
Sbjct: 159 TFAELARAHSACPSGELGGSLGQVTQGQTT-PEFEDALRRMT-PGQVSTEPVETRYGFHV 216

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
             +S      T+ F+ V+  IA  +       + +  Y
Sbjct: 217 IRLSRHIDGRTLPFEAVRTCIAAYL-SEAVRRRAEAQY 253


>gi|156541530|ref|XP_001603612.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 130

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G+KF ++A    +    S   LG  ++  +      ++
Sbjct: 38  KVRHILCEKQSKILEAMEKLKAGQKFNEVAATYSEDKARSGGDLGWMTRGSMVGP-FQEA 96

Query: 329 IFSLAKKGDFTPVI-----HGSFGYVIAHVSNIK 357
            F+L      +PV         FGY I  V   K
Sbjct: 97  AFALPISSLGSPVYTDPPVKTKFGYHIIMVEGKK 130


>gi|77458729|ref|YP_348235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens Pf0-1]
 gi|77382732|gb|ABA74245.1| putative peptidylprolyl isomerase [Pseudomonas fluorescens Pf0-1]
          Length = 310

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 64/170 (37%), Gaps = 12/170 (7%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKK-GKKFIQ 298
           S  ELQ  Y+  K  + +P +  V Q+         +   +K+A E  +  +     F  
Sbjct: 135 SAAELQQAYDAGKANWQTPALYRVSQIFLGVNEPQNLEAVRKQATELSKKAQATSADFAG 194

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADS--IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           LA+E  +       G  +        + +   + +  K G  +  +  S G+ +  ++  
Sbjct: 195 LAKEFSQDRLTAERGGDTGLQPLQQLVPEVRGVVARLKVGAVSDPVQSSGGFHVIKLTEQ 254

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           +P+ T +  E++  +   +R  +  +  +     +     L     E+++
Sbjct: 255 QPARTATLDELRDQLTQALRAQRQEQIAQAYLDGMLNTATLSIDGAELNK 304



 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 38/125 (30%), Gaps = 11/125 (8%)

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
           +    ++  E  K+ +   A       +++      +        G     + V  +   
Sbjct: 171 LEAVRKQATELSKKAQ---ATSADFAGLAKEFSQDRLTAERGGDTGLQPLQQLVPEVRGV 227

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
              L      D   S         G +  +++ E  PAR   L+E+   + +  +  +  
Sbjct: 228 VARLKVGAVSDPVQSS--------GGFHVIKLTEQQPARTATLDELRDQLTQALRAQRQE 279

Query: 497 EEVSS 501
           +   +
Sbjct: 280 QIAQA 284



 Score = 37.3 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 50/141 (35%), Gaps = 4/141 (2%)

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
           +  E V  +A +L  +      +F  + K      LT  +      +        +  V 
Sbjct: 169 QNLEAVRKQATELSKKAQATSADFAGLAKEFSQDRLTAERGGDTGLQPLQQLVPEVRGVV 228

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAY 609
           +         P+++   + V K+T  +       D+    LTQ +     + +  + +  
Sbjct: 229 ARLKVGAVSDPVQSSGGFHVIKLTEQQPARTATLDELRDQLTQALRAQRQEQIAQAYLDG 288

Query: 610 LKSQYSVTVHDNLIQRYLDGE 630
           + +  ++++    + + L+ +
Sbjct: 289 MLNTATLSIDGAELNKVLETK 309


>gi|116492445|ref|YP_804180.1| peptidylprolyl isomerase [Pediococcus pentosaceus ATCC 25745]
 gi|122266091|sp|Q03GD4|PRSA_PEDPA RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|116102595|gb|ABJ67738.1| Parvulin-like peptidyl-prolyl isomerase [Pediococcus pentosaceus
           ATCC 25745]
          Length = 295

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 83/231 (35%), Gaps = 44/231 (19%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             S   +T+ +  YKD Y               +    +I   L      +   +ISN +
Sbjct: 68  KVSKKTVTKQYNSYKDQYGSSFKSILSSNGMTTSSLKTQIRSNLLLKEAVKANDKISNAD 127

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+ E++  + K       TV Q++   +  A++  + L  G  F +LA++     S  + 
Sbjct: 128 LKKEWKSYEPK------VTVAQILVSKKSTAEDIIKKLNDGGDFTKLAKQYSTDSSTKNK 181

Query: 313 GSFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF------T 361
           G     +       D S   + F L +    T  +   +GY +  + N KPS       T
Sbjct: 182 GGKIAAFDDTNSTLDSSFKKAAFKLDEGKYTTTPVKTEYGYQVIKMIN-KPSKGKMSDHT 240

Query: 362 VSFQE------------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
              +E            ++  I   ++    + K K+    L+++L    S
Sbjct: 241 KELKERIWNADMSDSTTLRSVITKVLKKGNVTIKDKDLKNVLDDYLGSSAS 291



 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 53/192 (27%), Gaps = 39/192 (20%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K+ +    +            +  G+ TV +    K+    + +S K             
Sbjct: 3   KVLIGFASIAMAFT------LAACGNKTVATTSGGKITQDEYYSSLKNTTS--------- 47

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
                       K++L  ++    L+   +  G +     V     +   +  +      
Sbjct: 48  -----------GKQVLQEMIVNKVLE---KQYGDKVSKKTVTK---QYNSYKDQYGS--- 87

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
             F S L+  G+            L    +        + SN  L +  + Y    +V  
Sbjct: 88  -SFKSILSSNGMTTSSLKTQIRSNLL---LKEAVKANDKISNADLKKEWKSYEPKVTVAQ 143

Query: 195 IVLNNRHVPAIA 206
           I+++ +      
Sbjct: 144 ILVSKKSTAEDI 155


>gi|194292769|ref|YP_002008676.1| peptidyl-prolyl cis-trans isomerase [Cupriavidus taiwanensis LMG
           19424]
 gi|193226673|emb|CAQ72624.1| Peptidyl-prolyl cis-trans isomerase [Cupriavidus taiwanensis LMG
           19424]
          Length = 250

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 13/165 (7%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------QKEADEAFQ 288
           +  +    E      +  Y+ +  ++   E    + ++F            +  A     
Sbjct: 66  LAREAATPEADEASCRRHYDSHPGRFREGEWVEADHILFQVTPRVPLDALREVAAQTLAL 125

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSF 346
                  F   A       S  + G   + +  +       ++F+  + G    ++   +
Sbjct: 126 VRGDPASFAHHARALSNCPSGANGGRLGRVFRGETAPEFERALFAAQQDGVLPQLLESRY 185

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G  I  +    P   + F+ V+ +IA  +    A ++  + Y  L
Sbjct: 186 GLHIVRILERCPGTRLPFETVRGEIARALGAA-ARDRAWKQYASL 229


>gi|332878099|ref|ZP_08445829.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332684061|gb|EGJ56928.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 459

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/512 (10%), Positives = 147/512 (28%), Gaps = 113/512 (22%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSV----GRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +    FL  G+   LF+ S ++ V  V    G + +  S    +            G  +
Sbjct: 8   LYAFVFLFEGIQMHLFAQSPNNVVDEVIWVVGDEAILRSDVEAA--------RMDFGANI 59

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
           +      +       + L          +   +E ++ ++   +                
Sbjct: 60  SGNPYCVIP------EQLAIQKLFLHQAQLDSVEVENSQISANM--------------EA 99

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
                + R G ++++  ++Y K +++                + +       E  +V  +
Sbjct: 100 RLNELIMRAG-SKEKLEEYYHKTMTQ----------------IREMMFESLKEQYTVQRV 142

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP---EYKRISYILFDVHEKEKKIEISNDE 252
                ++ +    + A + ++F+   ++   P   +   +  I       +++IE    E
Sbjct: 143 R---ENLTSDIKVTPAEVRRYFKDMPED-SLPWISDQVEVQIITQQPRIPQEEIERVKAE 198

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLA----EEQGKSL 307
           L+                                   +  G+  F  LA    E+ G + 
Sbjct: 199 LRDY------------------------------TDRVNNGESSFSTLAILYSEDPGSAR 228

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
               +    +  + D + A+  FSL      + V+   +G+ I  + + +         V
Sbjct: 229 YGGEMDYVGRGEL-DPAFANVAFSLTDPKKISKVVESEYGFHIIQLVDKRGDKVK----V 283

Query: 368 KKDIAN-QMRITKASEKVKEDYKRLEEFLALGTSMDEIS---------RREKIVSIDLPL 417
           +  +   ++        +       E+      S +E +         R  + +  ++  
Sbjct: 284 RHILRKPKLAQADIDTTMVRMDSIAEDIRKEKYSFEEAATFLSDDKDSRNNRGLMTNVKF 343

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY---MWVQIKESIPA 474
               G  ++           ++   V         +  + +          V++K  I A
Sbjct: 344 DQSVGDQIRTSRFQLQELPAEVAKVVSTMKTGEISNPFLMVNSKGKEVCAVVKLKTHIKA 403

Query: 475 RDRKLEE----VLTDVKKDWKTVKTAEEVSSK 502
               + E    +   V    +  K  + +  K
Sbjct: 404 HRASMSEDFQVLKDVVMAKLQEQKINQWIKDK 435


>gi|311695520|gb|ADP98393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine bacterium
           HP15]
          Length = 94

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  ++ + +E  ++++ G+ F ++A++     S      LGSF    +    
Sbjct: 4   AQATARHILVDSEAKCEELKKAIEGGQDFAEVAKQHSSCPSGRNGGDLGSFGPGQMV-PE 62

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
              ++F+  +       +   FGY +  V++ 
Sbjct: 63  FDKAVFN-GELNTVIGPVKTQFGYHLLEVTSR 93


>gi|148260583|ref|YP_001234710.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
           JF-5]
 gi|326403778|ref|YP_004283860.1| putative peptidylprolyl isomerase [Acidiphilium multivorum AIU301]
 gi|146402264|gb|ABQ30791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
           JF-5]
 gi|325050640|dbj|BAJ80978.1| putative peptidylprolyl isomerase [Acidiphilium multivorum AIU301]
          Length = 248

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 72/199 (36%), Gaps = 24/199 (12%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E    S I   +  + +  ++S  + +AE+ +++ ++ +P +     ++      +++A 
Sbjct: 60  ETADESRIRRLLERRIRVADVSEADCRAEFARHRARFRTPPLFEAAHILIAADMSSEDAR 119

Query: 288 QSLKK------------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS-IFSLAK 334
              +                F +LA E     S    G   +    DV+   + + +   
Sbjct: 120 APARAEAARLASLLAARPDSFARLAREHSACPSGADGGGLGQITARDVTPEIASMLAAMT 179

Query: 335 KGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            G   P  +    GY +  +   +    + F+ V+  I + +R  +A          L+ 
Sbjct: 180 PGTICPVPVPTRHGYHLLRLDRREDGRDLPFEAVRDRIRDHLR-QRAW---------LDA 229

Query: 394 FLALGTSMDEISRREKIVS 412
             A   ++ ++S  E+   
Sbjct: 230 ARAYAATLTDVSAEEEPAP 248


>gi|313675957|ref|YP_004053953.1| ppic-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
           DSM 4126]
 gi|312942655|gb|ADR21845.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
           DSM 4126]
          Length = 713

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 8/123 (6%)

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSL 332
              +KE  + ++ L  G+ +  LA ++ + LS    G     F    +P  SL    F L
Sbjct: 255 LQTEKELKKIYEQLNSGENWFILATKESEDLSTKDNGGSLPWFGAGRLP-ASLETVAFEL 313

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRL 391
            +KGD +  +   +G+ I  + + +     S + +++ ++ +++  + SE K  E  K+L
Sbjct: 314 EEKGDISKPVESPYGWHILKLEDKR--GVGSLESMEESLSRRVQRDQRSELKEVEVIKKL 371

Query: 392 EEF 394
           +E 
Sbjct: 372 KEE 374



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 24/141 (17%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-----AFQ 288
           Y+           +++   ++  YE+               ++    K+A       A+Q
Sbjct: 99  YLEEIKKPYLTAEKVNKALVKETYER------LQHEVNASHILIRVDKDAKAEDTLKAYQ 152

Query: 289 SLK-------KGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGD 337
            ++        G+ F  LA E  +  S  S    LG F+   +       + +   + G+
Sbjct: 153 KIEEVKNKFDAGESFEALAREYSEDPSAKSNNGLLGWFTAFQMV-YPFESAAYQ-TEVGE 210

Query: 338 FTPVIHGSFGYVIAHVSNIKP 358
            +P+    FGY I  V++ + 
Sbjct: 211 ISPITRTQFGYHIIKVNDKRE 231



 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 15/102 (14%)

Query: 193 DYIVLNNRHVPAIADPSNAVLTQW-------FEKYKDNYRAPEYKRIS------YILFDV 239
           D+ +L+  +    A+  +  L ++       +E+     + PEYK +        +LF++
Sbjct: 414 DFSLLDFLNEYDSANNIDLELEKYEKSKLIQYEENNLELKYPEYKFLRQEYKDGLLLFEI 473

Query: 240 HEKEKKIEISND--ELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
             ++   +IS D   L+  YE++K +Y +     V ++VF +
Sbjct: 474 MNQKVWSKISEDTTALKKYYEEHKNRYKTDGELKVARIVFSD 515


>gi|120555794|ref|YP_960145.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
 gi|120325643|gb|ABM19958.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
          Length = 92

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  ++ + +E  ++++ G+ F ++A++     S      LGSF    +    
Sbjct: 2   AQATARHILVDSEAKCEELKKAIEGGQDFAEVAKQHSSCPSGRNGGDLGSFGPGQMV-PE 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
              ++F+ ++       I   FGY +  V++ 
Sbjct: 61  FDKAVFN-SELNTVIGPIKTQFGYHLLEVTSR 91


>gi|227878123|ref|ZP_03996103.1| peptidylprolyl isomerase [Lactobacillus crispatus JV-V01]
 gi|256843679|ref|ZP_05549167.1| peptidylprolyl isomerase [Lactobacillus crispatus 125-2-CHN]
 gi|256850147|ref|ZP_05555577.1| peptidylprolyl isomerase [Lactobacillus crispatus MV-1A-US]
 gi|262047710|ref|ZP_06020663.1| peptidylprolyl isomerase [Lactobacillus crispatus MV-3A-US]
 gi|293380430|ref|ZP_06626499.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus crispatus
           214-1]
 gi|295693412|ref|YP_003602022.1| parvulin-like peptidyl-prolyl isomerase [Lactobacillus crispatus
           ST1]
 gi|227862293|gb|EEJ69832.1| peptidylprolyl isomerase [Lactobacillus crispatus JV-V01]
 gi|256615099|gb|EEU20300.1| peptidylprolyl isomerase [Lactobacillus crispatus 125-2-CHN]
 gi|256713119|gb|EEU28110.1| peptidylprolyl isomerase [Lactobacillus crispatus MV-1A-US]
 gi|260571995|gb|EEX28562.1| peptidylprolyl isomerase [Lactobacillus crispatus MV-3A-US]
 gi|290923009|gb|EFD99942.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus crispatus
           214-1]
 gi|295031518|emb|CBL50997.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus crispatus
           ST1]
          Length = 298

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 16/234 (6%)

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDN 223
           V  + GG        D+ K+      ++  +++N           S   + + +  YK  
Sbjct: 33  VASYKGGKITQEQYYDEMKKSQAGKSTLANMIINRALEQQYGKYVSQKKVDKQYNNYKKQ 92

Query: 224 YRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSP-----EIRTVEQL 275
           Y +     +          ++ I+   +S   L+   +  K++            TV+ +
Sbjct: 93  YGSQFSAVLQQNGMTASSFKQNIKTNLLSEQALKHIKKVTKKQEQQAWKSYQPKVTVQHI 152

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-----GSFSKEYIPDVSLADSIF 330
           +   +  A    + LK GK F  LA++     +  +         S +   D S   + F
Sbjct: 153 LVAKKSTAQSIIKQLKDGKSFKVLAKKYSLDTATKNKAGKLPSFDSTDTTLDSSFKTAAF 212

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
            L      +  +    GY +  + +  P+    F + KK I +Q+  + A ++ 
Sbjct: 213 KLKTGEVTSTPVKSQSGYHVIKMIS-HPAKGK-FADHKKAIDDQIYASMAQDQA 264



 Score = 37.3 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 47/168 (27%), Gaps = 33/168 (19%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           +    +TV S    K+    +                     +  +     K  L N++ 
Sbjct: 26  NSGTKATVASYKGGKITQEQYY--------------------DEMKKSQAGKSTLANMII 65

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L+Q     G      +V     +   +  +        F + L + G+    +  + 
Sbjct: 66  NRALEQQ---YGKYVSQKKVDK---QYNNYKKQYGS----QFSAVLQQNGMTASSFKQNI 115

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
              L     +       + +     QA + Y    +V +I++  +   
Sbjct: 116 KTNLLSEQALKHIK---KVTKKQEQQAWKSYQPKVTVQHILVAKKSTA 160


>gi|307208736|gb|EFN86013.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           [Harpegnathos saltator]
          Length = 126

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G+KF ++A    +    S   LG  ++  +      D+
Sbjct: 34  KVRHILCEKQSKILEALEKLKAGQKFNEVAATYSEDKARSGGDLGWMTRGSMVGP-FQDA 92

Query: 329 IFSLAKKGDFTPVI-----HGSFGYVIAHVSNIK 357
            F+L      +PV         FGY I  V + K
Sbjct: 93  AFALPISSLASPVYTDPPVKTKFGYHIIMVESKK 126


>gi|304310966|ref|YP_003810564.1| Probably peptidyl-prolyl CIS-trans isomerase C [gamma
           proteobacterium HdN1]
 gi|301796699|emb|CBL44911.1| Probably peptidyl-prolyl CIS-trans isomerase C [gamma
           proteobacterium HdN1]
          Length = 264

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 84/260 (32%), Gaps = 32/260 (12%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           ++  +V +    +  + +  + A  +  E R   +       V        A L      
Sbjct: 11  AKAMLVSVNGVEIPEAAIKAEMAAEYADEERVKAWEKAATALVIRELLLQQASLQGL--- 67

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                   E      I   +    +         +  +E+N  ++ SP++     ++F  
Sbjct: 68  --------EGDEAECIDTLLSRNIEVPTADESYCRRFFEENPARFRSPDLIEARHILFAA 119

Query: 280 -----------QKEADEAFQSLKK-GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
                      Q+EA    + L+   ++F + A E     S     SLG  SK       
Sbjct: 120 APGDWDARDLAQEEAVRIIERLRATPEQFAEYANEYSACPSREEGGSLGQLSKGSTV-PE 178

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
              +IF L   G     I   +GY +  + +      + ++ VK+ +A  +         
Sbjct: 179 FESAIFGLP-TGLHGTPIESRYGYHVVWIDHRVDGQPLPYEHVKEGVARYLEDN----VF 233

Query: 385 KEDYKRLEEFLALGTSMDEI 404
           ++   +  + LA   ++  I
Sbjct: 234 RQGLSQYLQLLAGSATITGI 253


>gi|260775523|ref|ZP_05884420.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260608704|gb|EEX34869.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 431

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 122/378 (32%), Gaps = 88/378 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    V  S    S K       +      N        L +++ + L+     
Sbjct: 28  DKVAVIVNSGVVLQSDIETSLKTIRANAKKN-----NQSLPDEATLREQVTEKLIVDTIQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E IG+  D  R+   I        K+N  +     + +A EG++  ++ +   K +
Sbjct: 83  QQEAERIGVRIDDNRLNEAIDEI----AKNNNQTLQQLNTSIAEEGLSYAQFREQVRKEI 138

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFE 218
           +  +     V                    R ++ +     ++  I A  +NA +     
Sbjct: 139 AANEARNALV-------------------RRRINILPAEVDNLANILAKETNATVQ---- 175

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                       +I +I   V++ + K  I                              
Sbjct: 176 -----------YKIGHIQLRVNDGDDKAAI------------------------------ 194

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            +++A++  + L +G  F  +A    K   +L     G   KE +P    AD I +L  K
Sbjct: 195 -EEKANQIVKELNQGSDFSTMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-NLQNK 251

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKR 390
           G          G+ I  + ++K   TV+  EV      I     +      +++ +  +R
Sbjct: 252 GSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGVQKELLDITRR 311

Query: 391 LEEFLALGTSMDEISRRE 408
           ++   +   +  E++++ 
Sbjct: 312 IQ---SGKATFAEMAQQY 326


>gi|325522151|gb|EGD00807.1| putative peptidylprolyl isomerase [Burkholderia sp. TJI49]
          Length = 280

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 10/170 (5%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           + ++     V +      +++ E++A Y+         E R  E +   +  + +    +
Sbjct: 105 RTVAATDLYVRDNVHPQAVTDAEVKARYDHIVANAAQFEYR-AEVIAVADPAQMNTVIAA 163

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSF--------SKEYIPDVSLADSIFSLAKKGDFTPV 341
           LK+G  F  LA++   + +                        +A++I SL + G     
Sbjct: 164 LKQGAAFDTLAKQYNTTPNGGVAQWVELRTPVAEGSTGGLPTPIAEAITSL-QPGAVAGP 222

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           I       I  +   +P+   +F   KK +  Q+        +     +L
Sbjct: 223 IRIGNALAIVKLDEKRPTTVPTFDAAKKVLRQQLEAEAQQRAMAALVDKL 272


>gi|326319525|ref|YP_004237197.1| SurA domain-containing protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323376361|gb|ADX48630.1| SurA domain protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 476

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 113/403 (28%), Gaps = 66/403 (16%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +  +       +    ++ + G     +      L +++L+ L++     Q 
Sbjct: 73  VAVVNTEPITNNEVQARLARVEHQLAAQGGERPPRQV-----LAREVLERLINEKIQVQM 127

Query: 103 IEDIGLEADHGRV--------WGEIARSPLFHG--KDNKFSHDVFVSRLAR----EGINE 148
             + G++ D   +               P  H     +  S + F S L      + + E
Sbjct: 128 AIESGIKVDDYAISQAEQSVARQNSVSIPEMHRRLAADGISPERFRSELRNQMLIQRLRE 187

Query: 149 --------------KEYIDHYTK---------MLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
                          +Y+    +          L+  +++        P  +   + +  
Sbjct: 188 RDVESRVRVTDLDVDQYMRDQQQSAISDPSKIELNLANILVAVPENATPEVVEQRRQRAQ 247

Query: 186 YFENRSV---DYIVLNNRHVPAIADPSNAVLT-QWFEKYKDNYRAPEYKRISYILFDVHE 241
              +R     D+  +      A   P    L  +  ++Y D +     +     +     
Sbjct: 248 QAADRVRAGEDFAKVARELSDAPDAPIGGELGLRPADRYPDLFVRTVQQVPVGGIAGPVR 307

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------QKEADEAFQSLK 291
                 +    L+           S     V  ++             ++ A+   + L 
Sbjct: 308 SPAGFHV----LRVLERSRAGIPSSAVQTHVRHILLRTGPQLTEAAAAERLAEYRRRILS 363

Query: 292 KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
               F  LA E  +  S      LG             +++ +L K  + +  I   FG 
Sbjct: 364 GQADFATLAREHSQDGSAKQGGDLGWAGPGRYV-PEFEEAVEAL-KPDEISQPIVSRFGV 421

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            +  +   + +     ++ +  + + +R  K  E      +  
Sbjct: 422 HLIQLLERREAKLTQREQ-RDMVRDAVREKKLEEAFTNWAQEA 463



 Score = 47.3 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/372 (11%), Positives = 111/372 (29%), Gaps = 52/372 (13%)

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            V      G++  +  + QA++      SV    ++ R       P             +
Sbjct: 124 QVQMAIESGIKVDDYAISQAEQSVARQNSVSIPEMHRRLAADGISP-------------E 170

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR---TVEQLVFPN 279
            +R+    ++        + E ++ +++ ++       ++   S   +    +  ++   
Sbjct: 171 RFRSELRNQMLIQRLRERDVESRVRVTDLDVDQYMRDQQQSAISDPSKIELNLANILVAV 230

Query: 280 QKEA------------DEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
            + A             +A   ++ G+ F ++A E   +        LG    +  PD+ 
Sbjct: 231 PENATPEVVEQRRQRAQQAADRVRAGEDFAKVARELSDAPDAPIGGELGLRPADRYPDLF 290

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT----KA 380
           +          G     +    G+ +  V     +   S   V+  + + +  T      
Sbjct: 291 VRTV--QQVPVGGIAGPVRSPAGFHVLRVLERSRAGIPS-SAVQTHVRHILLRTGPQLTE 347

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
           +   +   +     L+       ++R               G          +P  E+ +
Sbjct: 348 AAAAERLAEYRRRILSGQADFATLAREHSQDG----SAKQGGDLGWAGPGRYVPEFEEAV 403

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEE 498
             +        K   ++ P  S   V + + +  R+ KL   E    V+   +  K  E 
Sbjct: 404 EAL--------KPDEISQPIVSRFGVHLIQLLERREAKLTQREQRDMVRDAVREKKLEEA 455

Query: 499 VSSKANQLVLEY 510
            ++ A +     
Sbjct: 456 FTNWAQEARARA 467


>gi|295106377|emb|CBL03920.1| Parvulin-like peptidyl-prolyl isomerase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 439

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/388 (12%), Positives = 110/388 (28%), Gaps = 95/388 (24%)

Query: 29  GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS----QKIGFVVNSERARSVG 84
           G S +           +V   ++P        +     +S       G  +         
Sbjct: 29  GASASGTKTYTGGVAATVNGTEIPEDEVTGMVESIRSQMSMTDADTWGQWLADNAMTPES 88

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
           + ++++D+      + Q  ++  +  +   +   + ++       N    + + + L + 
Sbjct: 89  VREEMIDSFAQQELIKQGAKEKNISVESSEIDDIVNKTKA-----NYEDDEKWKAALEQA 143

Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
           G  E++Y ++    L +  +                                       +
Sbjct: 144 GFTEEKYRENVESQLLQKKL----------------------------------TESFAS 169

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
             +PS   L ++ + Y   Y     KR S+ILFD  ++     + +              
Sbjct: 170 DEEPSQEDLLKYAQMYASAYDG--AKRSSHILFDSGDEATAQSVLD-------------- 213

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
                    Q+       A+ A Q  K   +    +  +G  +    L SF  EY     
Sbjct: 214 ---------QINSGQLDFAEAAKQYSKDNAEGTGGSAAKGGDVGWDKLSSFVTEYT---- 260

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI--------------------KPSFTVSF 364
             D++  L K    + ++   +G  I   +++                            
Sbjct: 261 --DALAGLEKD-QVSGLVTSQYGIHIIKCTDVFNAPKVVGEDGTETVELTSTDQIPVEFL 317

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLE 392
             VK+ +  Q + T   E   E  +  +
Sbjct: 318 DSVKESLKQQNQSTAVQEWFNEYKENAD 345


>gi|85711461|ref|ZP_01042519.1| Parvulin-like peptidyl-prolyl isomerase [Idiomarina baltica OS145]
 gi|85694613|gb|EAQ32553.1| Parvulin-like peptidyl-prolyl isomerase [Idiomarina baltica OS145]
          Length = 92

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
                  ++   + EA+E  + L  G KF  LA +     S      LG F +  +   +
Sbjct: 2   ARAHALHILVKTKPEAEELKKQLANGAKFADLARKHSLCPSGKQGGDLGEFRRGEMV-PA 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAH 352
               +F      +    +  +FGY +  
Sbjct: 61  FDKVVFGQPTL-EVHGPVKTAFGYHLIK 87


>gi|320103204|ref|YP_004178795.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida
           ATCC 43644]
 gi|319750486|gb|ADV62246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida
           ATCC 43644]
          Length = 436

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/378 (11%), Positives = 116/378 (30%), Gaps = 89/378 (23%)

Query: 31  SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV-NSERARSVGLDKKI 89
              + S S S+    VG   +           E+   +Q+ G  +        + ++K +
Sbjct: 107 GGRVLSRSDSTLAARVGDAVITRGELD----HEIDRFAQQNGVSLATLTPEERLQVEKMV 162

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
           L+  +    + Q                 + ++P    K ++F++               
Sbjct: 163 LNERIDRELILQEARR-------------VLKTPEQWAKISEFANQR------------- 196

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
            +       L R                L++  +    + R +                 
Sbjct: 197 -WEAEEAPSLLRE----------AGVETLVELKEWMKRQGRDL----------------- 228

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           +  L  +              ++    +       ++++   E+ A+Y++ +E++   E 
Sbjct: 229 DQELEDY------------RVKVITTEYLRMTLGPRLQVDLPEMLADYQQRREQFRR-EA 275

Query: 270 RTVEQLVFPNQKE----------ADEAFQSLKKGKKFIQLA--EEQGKSLSDISLGSFSK 317
           R V + +  +             A    + L+ G+ F  +A  E  G + SD      + 
Sbjct: 276 RLVWRELLADPARVGGREAAAGLARNWLERLQHGEDFAHIARTESHGVTASDGGRWETTP 335

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVI--HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           E      +  ++ ++      +P +      G  +  + +   +    F +V+  +  ++
Sbjct: 336 EGYNRREVNQALAAMTPP---SPPVLVESEDGVHVIQLESRTQAGFQPFSDVQDQLRERL 392

Query: 376 RITKASEKVKEDYKRLEE 393
              K  ++ +   +RL +
Sbjct: 393 FQAKLQQESRRLLERLRQ 410


>gi|256027747|ref|ZP_05441581.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D11]
          Length = 563

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 123/361 (34%), Gaps = 51/361 (14%)

Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-NLLLDQAKRFYFENRSVDYIVLNNRHV 202
           + I++++      +M+SR   +           N  LD   +F       DY +     V
Sbjct: 249 QKISKEDAEKQAKEMISRQIKMAKIAKEKGVKVNENLDSISQFQ------DYYIGLAEKV 302

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                P++  L ++F   K  Y  P       +   V   ++     +D+L         
Sbjct: 303 RDDVKPTDDELLKFFNANKSKYSIPATADAKLVFISVKSAKE-----DDDL--------- 348

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEYI 320
                            +++A++    L   + F +  +     + +    LG+F    +
Sbjct: 349 ----------------AKEKAEKLLSELT-PENFTEKGKSLSNNQDIIYQDLGTFGTTAM 391

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 +++  +        VI   FGY IA+V     +      EV+  +       K 
Sbjct: 392 VK-EFEEALRDVPSNTVVNKVIKTKFGYHIAYVKKNDNNQQW---EVEHILIVPYPSEKT 447

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
             +  E   +++  +  GT    ++  +KI    +   D  G    G  +    Y  ++ 
Sbjct: 448 VTEKLEKLNKVKAEIEAGT----LTLNDKIDEDVIQSFDAKGITPDGV-IPDFVYNPEIA 502

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
             VFG +  L+K   +     + +  Q  + + A D   ++    VK D+   K AE +S
Sbjct: 503 KAVFGTE--LNKVGIINPNKATIVVFQKTKEVKAEDANFDKSKEQVKSDYINNKVAEYMS 560

Query: 501 S 501
            
Sbjct: 561 K 561



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 81/620 (13%), Positives = 182/620 (29%), Gaps = 72/620 (11%)

Query: 4   IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
            IRK  +    K F+++L V F++        S   S          +    ++      
Sbjct: 2   SIRKFRKQ--MKPFIIILTVVFILSLAYGGYESYKTSRANKKAQEAMLLNKDYVQKID-- 57

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
           +    Q +     S+R     +D    ++++         +D+ ++     V     +  
Sbjct: 58  IERAKQDLSRTY-SDRVDKDIVDILAFNDVIDKNLTLHIAKDLKVKVPSSEVDK---QYE 113

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
                      + F   L   G+ +    +   + L        F   + P++  ++   
Sbjct: 114 ELESSMG--DKEQFRRMLQVRGLTKDSLKNQIEENLLMQKTREEFAKNINPTDEEINTYM 171

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
             Y          +N        +     L +  ++ +    APEY+ +           
Sbjct: 172 ALYSIPADKKEEAVNLYKSEKGNEAFREALLKARKEMQIKDLAPEYENL----------- 220

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
             +E +  E +     N +   +     + Q +     E  +A + + +  K  ++A+E+
Sbjct: 221 --VEKTAYEEEGFNITNLDLARATANIMLGQKISKEDAE-KQAKEMISRQIKMAKIAKEK 277

Query: 304 GKSLSD------------ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           G  +++            I L    ++ +         F  A K  ++         V  
Sbjct: 278 GVKVNENLDSISQFQDYYIGLAEKVRDDVKPTDDELLKFFNANKSKYSIPATADAKLVFI 337

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            V + K               + +   KA + + E     E F   G S+   S  + I+
Sbjct: 338 SVKSAKED-------------DDLAKEKAEKLLSELTP--ENFTEKGKSL---SNNQDII 379

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
             DL          + +E         ++ +V          +     +     V+    
Sbjct: 380 YQDLGTFGTTAMVKEFEEALRDVPSNTVVNKVIKTKFGYHIAYVKKNDNNQQWEVEHILI 439

Query: 472 IP-ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
           +P   ++              T K  +    KA       +   K   D+ ++  A  +T
Sbjct: 440 VPYPSEKT------------VTEKLEKLNKVKAEIEAGTLTLNDKIDEDVIQSFDAKGIT 487

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
            + +      +  +  +    VF   +  V      N  + VVF+ T          DK 
Sbjct: 488 PDGV----IPDFVYNPEIAKAVFGTELNKVGIIN-PNKATIVVFQKTKEVKAEDANFDKS 542

Query: 591 ISYLTQMMNKDLLDSVIAYL 610
              +      + +   ++ L
Sbjct: 543 KEQVKSDYINNKVAEYMSKL 562


>gi|254294289|ref|YP_003060312.1| SurA domain protein [Hirschia baltica ATCC 49814]
 gi|254042820|gb|ACT59615.1| SurA domain protein [Hirschia baltica ATCC 49814]
          Length = 426

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 62/469 (13%), Positives = 129/469 (27%), Gaps = 102/469 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
             TV  V  Q + +S      +  L      +G   N+E  R        ++ L+     
Sbjct: 43  EGTVAIVNDQPISYSDVRQRAQFILV----SLGVQPNAETIRQAQTR--AIEGLIDEKLQ 96

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E   L  +   +   IA              + F+  LA+ G++ +   D     +
Sbjct: 97  LQEAETYELVVEEAEIDDSIANIAARSNAT----PEDFLQGLAQVGLSPRTLRDQIRADI 152

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +   +VG   G                     V    L         + S          
Sbjct: 153 AWRRLVGGRFGS-------------------RVRISSLQIDDNLERLNKSMEE------- 186

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                  P+Y+     L           I+ +E+   Y+                     
Sbjct: 187 -------PQYRIAEIFLPG---------ITQEEISVVYQ--------------------- 209

Query: 280 QKEADEAFQSLKK-GKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKK 335
              A+E  + ++     F  +A +   +    +   +G   +  +     AD + +L+K 
Sbjct: 210 --GAEELKRQIENQAAPFEAVARQFSAAPTASAGGEIGWLGESQL-KKEYADQVRALSKP 266

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI-TKASEKVKEDYKRLEEF 394
           G  T  I    G  +  + N +     +   V   +         A  KV     ++E  
Sbjct: 267 G-LTDPIVTDNGVYLVSLMNKQAPVEEAL--VGFKLKQIYATGADAVSKVDNAAAQIENC 323

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
            AL     E + +E +  +D  +        + ++             +F      S   
Sbjct: 324 AALDN---ESASQEGVAFVDFGVTQLTELSQQYQD-------------LFNAQSDNSHSA 367

Query: 455 TVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEEVSS 501
            + + D     V +     +R       ++   +  +   +  +  +  
Sbjct: 368 PIMVADNKAAIVYVCSHEMSRGNMPTRADIEDKLHGEMVDMMASRYLRD 416


>gi|237744140|ref|ZP_04574621.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 7_1]
 gi|289765704|ref|ZP_06525082.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D11]
 gi|229431369|gb|EEO41581.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 7_1]
 gi|289717259|gb|EFD81271.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D11]
          Length = 356

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 123/361 (34%), Gaps = 51/361 (14%)

Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-NLLLDQAKRFYFENRSVDYIVLNNRHV 202
           + I++++      +M+SR   +           N  LD   +F       DY +     V
Sbjct: 42  QKISKEDAEKQAKEMISRQIKMAKIAKEKGVKVNENLDSISQFQ------DYYIGLAEKV 95

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                P++  L ++F   K  Y  P       +   V   ++     +D+L         
Sbjct: 96  RDDVKPTDDELLKFFNANKSKYSIPATADAKLVFISVKSAKE-----DDDL--------- 141

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEYI 320
                            +++A++    L   + F +  +     + +    LG+F    +
Sbjct: 142 ----------------AKEKAEKLLSELT-PENFTEKGKSLSNNQDIIYQDLGTFGTTAM 184

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 +++  +        VI   FGY IA+V     +      EV+  +       K 
Sbjct: 185 VK-EFEEALRDVPSNTVVNKVIKTKFGYHIAYVKKNDNNQQW---EVEHILIVPYPSEKT 240

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
             +  E   +++  +  GT    ++  +KI    +   D  G    G  +    Y  ++ 
Sbjct: 241 VTEKLEKLNKVKAEIEAGT----LTLNDKIDEDVIQSFDAKGITPDGV-IPDFVYNPEIA 295

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
             VFG +  L+K   +     + +  Q  + + A D   ++    VK D+   K AE +S
Sbjct: 296 KAVFGTE--LNKVGIINPNKATIVVFQKTKEVKAEDANFDKSKEQVKSDYINNKVAEYMS 353

Query: 501 S 501
            
Sbjct: 354 K 354


>gi|167622857|ref|YP_001673151.1| SurA domain-containing protein [Shewanella halifaxensis HAW-EB4]
 gi|167352879|gb|ABZ75492.1| SurA domain [Shewanella halifaxensis HAW-EB4]
          Length = 434

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/346 (13%), Positives = 112/346 (32%), Gaps = 63/346 (18%)

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
           +   +   G  + S+ A    L  ++++ L+      Q  + IGL     ++   I    
Sbjct: 51  IRANAANAGQKLPSDTA----LRTQVIERLILTRLQLQMADRIGLHIGDLQLDQTIENI- 105

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQA 182
               K+ K +     +++  EG    +Y +   + ++  ++        ++ S   ++  
Sbjct: 106 ---AKEQKMTVAQMKAQIESEGTTFAQYREQLREEITLGEIQRIQVQRRIQVSPQEINSL 162

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK------------DNYR----- 225
            +   E   +  +     H+     PS+A   Q     K            D++R     
Sbjct: 163 VKLINEQ-GLKEVEFQIGHILIDV-PSDANSQQLEAASKRAAVVMKRLKDGDDFRSIAIA 220

Query: 226 ------APEYKRISYILFDVHEKEKKIEISNDELQAEY-------------EKNKEKYFS 266
                 A E     Y+  +         +++ +                    +     +
Sbjct: 221 ASSGPKALEGGIWDYMNINEMPTLFAEVVTDAKTGDIIGPIKSASGFHIIKVMDARGLET 280

Query: 267 PEIRTV--EQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG- 313
            E++ V    ++       +++ A    D     +K G+ KF  LA +  +     + G 
Sbjct: 281 KEVKEVKSRHILLKPSPILSEERAKSMMDRFLTQVKSGEAKFEDLARQYSEDPGSAAKGG 340

Query: 314 --SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
              ++   I   + A  + SL + G ++     + G+ I  +   +
Sbjct: 341 ELGWADPNIYVPAFAQELNSL-EIGGYSEPFRSTHGWHIVQLEERR 385



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 101/306 (33%), Gaps = 37/306 (12%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             +L+R  +      G+   +L LDQ                   ++      + A +  
Sbjct: 75  RLILTRLQLQMADRIGLHIGDLQLDQ----------------TIENIAKEQKMTVAQMKA 118

Query: 216 WFEKYK---DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
             E        YR    + I+       + +++I++S  E+ +  +   E+        +
Sbjct: 119 QIESEGTTFAQYREQLREEITLGEIQRIQVQRRIQVSPQEINSLVKLINEQGLKEVEFQI 178

Query: 273 EQLVFPNQKEADE------------AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
             ++     +A+               + LK G  F  +A         +  G +    I
Sbjct: 179 GHILIDVPSDANSQQLEAASKRAAVVMKRLKDGDDFRSIAIAASSGPKALEGGIWDYMNI 238

Query: 321 PD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRIT 378
            +  +L   + + AK GD    I  + G+ I  V + +   T   +EVK   I  +    
Sbjct: 239 NEMPTLFAEVVTDAKTGDIIGPIKSASGFHIIKVMDARGLETKEVKEVKSRHILLKPSPI 298

Query: 379 KASEKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
            + E+ K    R L +  +     ++++R+    S D       G+         +P   
Sbjct: 299 LSEERAKSMMDRFLTQVKSGEAKFEDLARQY---SEDPGSAAKGGELGWADPNIYVPAFA 355

Query: 438 QLLFRV 443
           Q L  +
Sbjct: 356 QELNSL 361


>gi|307171509|gb|EFN63350.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Camponotus
           floridanus]
          Length = 125

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G+KF ++A    +    S   LG  ++  +      D+
Sbjct: 33  KVRHILCEKQSKILEALEKLKAGQKFNEVAATYSEDKARSGGDLGWMTRGSMVGP-FQDA 91

Query: 329 IFSLAKKGDFT-----PVIHGSFGYVIAHVSNIK 357
            F+L      +     P +   FGY I  V   K
Sbjct: 92  AFALPISNLASPIYTDPPVKTKFGYHIIMVEGKK 125


>gi|237740229|ref|ZP_04570710.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 2_1_31]
 gi|229422246|gb|EEO37293.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 2_1_31]
          Length = 356

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 116/350 (33%), Gaps = 44/350 (12%)

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
              + L++  +              +   +     ++  DY +  +  V     P++A L
Sbjct: 47  EQAEELAKNMIAKQIKVAKMAKEKGVKVNEELDLMSQLQDYAIGLSEKVREEIKPTDAEL 106

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
             +F   K  Y  PE      I   V   ++   +                         
Sbjct: 107 ESFFNTNKSRYNIPETADAKLIFITVKSTKEDDAV------------------------- 141

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEYIPDVSLADSIFS 331
                 + EA++    L   + F +  +  G  + +    LG+F  + +      +++  
Sbjct: 142 -----AKAEAEKLLAELT-PENFSEKGKTLGNNQDIIYQDLGTFGTKAMVK-EFEEALKD 194

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +        VI   FGY + +V     +   S + +   +       K   +  E  ++L
Sbjct: 195 VPSNTVINKVIKTKFGYHVVYVKKNDNNQQWSAEHI---LIVPYPSDKTVAEKLEKLEKL 251

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
           +  +  GT    ++  +KI    +   D  G    G  +    Y  ++   VF  + PL+
Sbjct: 252 KADIEAGT----LALNDKIDEDVIQSFDAKGITPDGI-IPDFVYSPEIAKAVF--ETPLN 304

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
           K   +     + +  Q  + + A +    ++  +V+KD+   +  E +S 
Sbjct: 305 KVGIINPNKATIIVFQKTKEVKAEEANFTKLKEEVRKDYINKQVGEYMSK 354


>gi|256823777|ref|YP_003147740.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
           DSM 16069]
 gi|256797316|gb|ACV27972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
           DSM 16069]
          Length = 95

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIF 330
            ++   +KEA      L+KG  F QLA+             LG F +  +      +++F
Sbjct: 8   HILVKTEKEALALKAKLEKGADFYQLAKRHSMCPSKKQGGDLGEFKRGQMVKP-FDNAVF 66

Query: 331 SLAKKGD-FTPVIHGSFGYVIAHV 353
           +   +       +   FGY +  V
Sbjct: 67  AKGSEDKPLIGPVKTRFGYHLIKV 90


>gi|120436843|ref|YP_862529.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gramella forsetii
           KT0803]
 gi|117578993|emb|CAL67462.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gramella forsetii
           KT0803]
          Length = 482

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/339 (12%), Positives = 110/339 (32%), Gaps = 33/339 (9%)

Query: 133 SHDVFVSRLAREGINEKEYID-HYTKMLSRTDVVG--MFVGGMRPSNLLLDQAKRFYFEN 189
             D+    +  +G++  +  D +    L    +         +   +  +        + 
Sbjct: 77  DVDLMYKDMQSQGMSTADVTDCNLAGSLMENKLYAHHAIQDSIIIPDSQISATVDQQIQG 136

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
            +     +  + +      S A L        + ++  + ++++       +  ++IE++
Sbjct: 137 LAQQAGSME-KVLEFYKKESEAELRD------EIFQLTKQRQLA--QRMQQKIIEEIEVT 187

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ---KEADEAFQSL--------KKGKKFIQ 298
            +E++  Y    EK        + Q+V   +    E  +    L        + G  F  
Sbjct: 188 PEEVRQYYVGMDEKPMFGTEVELSQIVIEPEIPESEKQKVIDRLNGFKADIEENGASFST 247

Query: 299 LAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
            A    +   + S G   + +++        D  FSL ++G+ +      FGY I  V  
Sbjct: 248 KAVLYSQDPGNASDGGRITLTRKDAFVKEFKDVAFSL-QEGEISEPFETEFGYHIIQVDK 306

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           I+        E++  I        + E  + +   L   +  G    E +   +  S + 
Sbjct: 307 IRGQTV----ELRHIILIPDVTNASVEAARTEIDTLRSKITAGD--IEFAAAAREASDEE 360

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
              +  GK +  +         ++   +F + + L +  
Sbjct: 361 ETKNEGGKLINPRTGDTRFELTKIDPELFKQVEGLEEGE 399


>gi|139439422|ref|ZP_01772863.1| Hypothetical protein COLAER_01883 [Collinsella aerofaciens ATCC
           25986]
 gi|133775201|gb|EBA39021.1| Hypothetical protein COLAER_01883 [Collinsella aerofaciens ATCC
           25986]
          Length = 407

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/419 (13%), Positives = 112/419 (26%), Gaps = 107/419 (25%)

Query: 6   RKASRTWVAKIFLVVLFV--------PFLIWGLSDALFSVSGS-----STVVSVGRQKVP 52
           RK   +   KI LVV+ V             GL     S S           ++    + 
Sbjct: 29  RKTYVSKTVKIVLVVIGVLAMLLSVSAMACSGLMSQTESASSGYKLTGGVAATINGTNLT 88

Query: 53  FSSFINSWKQELGMISQKIGFVVNSERARSV--------GLDKKILDNLVSGATLDQFIE 104
             +       ++  +    G+  + + A+ +           K+++D+      L Q  +
Sbjct: 89  EDTVTK----QIMSMRTSYGYTKDKDWAQYLVDNDLTPKKYRKQLIDSYAQQILLQQAQK 144

Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
           + G+      V                     F   L   G  E  Y D   + L++  +
Sbjct: 145 ENGVTVSDEEVEKAWKD--ACKSAGG---AKAFKKTLKTYGYTEDTYKDSLKESLAQQKL 199

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
                                                V   + P ++ +  +  +   NY
Sbjct: 200 ----------------------------------KDAVAPTSKPKDSEIVDYINENLSNY 225

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
                     I  D          S+++  A                        + +A 
Sbjct: 226 NDARRSSNILIKVDSDA-------SDEDKAA-----------------------AKAKAQ 255

Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           E    +  G+  F    E+             +G        D     +      KGD +
Sbjct: 256 ECLDKINSGELSFEDAVEQYSDDTGSKDKKGDVGWDKLTTFVDSY--QAALEGLNKGDVS 313

Query: 340 PVIHGSFGYVIAHVSN--IKPSFTVSFQEVKKDIA----NQMRITKASEKVKEDYKRLE 392
            V+  ++GY I   ++     +     ++V KDI     N ++   AS    E  ++ +
Sbjct: 314 DVVESTYGYHIIKCTDYFHVDNQVDDIKQVPKDIKKYVSNVVKTQAASTAYSEWLEQYK 372


>gi|269122654|ref|YP_003310831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sebaldella
           termitidis ATCC 33386]
 gi|268616532|gb|ACZ10900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sebaldella
           termitidis ATCC 33386]
          Length = 600

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/433 (13%), Positives = 145/433 (33%), Gaps = 64/433 (14%)

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARS--PLFHGKDNKFSHDVFVSRLAREGIN- 147
            +L+  + +++  E   +      +         P+   +   F   +  +R+    ++ 
Sbjct: 216 SDLIRNSLIEKQREKAKIVFKDDEIKKLYEEMVRPIAEKEGYSFKEALMDTRILMMVVST 275

Query: 148 ----EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF--ENRSV--DYIVLNN 199
                ++ I    + + + D+  +   G       +  +  F    E R +   Y V   
Sbjct: 276 GTEYSEDLIAKVRESI-QKDLDNLVAVGKAAKEKGIKASPDFVGVDELRDLGKRYFVYLV 334

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
                  +PS+A L + ++  +  Y      R S   + V +     E   +        
Sbjct: 335 DSY----NPSDADLKKIYDADQGKYD----IRHSVGGYVVGDFFDPTEADKE-------- 378

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSF 315
                               +K A+E  ++L   + F++ A++  +          LG  
Sbjct: 379 ------------------NTKKSAEELKKTLT-PENFVETAKKVSEDPGSKDQGGELGWV 419

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
                      ++I S A+KG     +   FG  I +V ++  S     ++V   +    
Sbjct: 420 DSNTNFVPEFLEAIKS-AQKGQIIGPVQTEFGSHIIYVEDV-DSANPDKKKVSHILLLPK 477

Query: 376 RITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
               + +++ +    L++ L     +  ++  ++K       + +   K  +   V  I 
Sbjct: 478 PSEASRKELVDRLDTLKKELEEKKVTWTDVIDQDKY---KYEVKEVFKKIYENSAVPGIG 534

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
           + E+   ++F         + V   +G Y  +     +P + R  EEV   +    +  +
Sbjct: 535 FVEEANKKLFASKVDEVLSYEV---NGGYFLMVKTAEVPYKKRTFEEVKGQI----RNEE 587

Query: 495 TAEEVSSKANQLV 507
             +  + + ++L+
Sbjct: 588 ALKYATQELDKLL 600



 Score = 66.9 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 99/290 (34%), Gaps = 37/290 (12%)

Query: 4   IIRKASRTWV-AKIFLVVLFVPFLIWGLSDALFSV----SGSSTVVSVGRQKVPFSSFIN 58
            +RK  +  V   +  +   +  +   + +++ +       +  +  V   K+       
Sbjct: 2   ALRKFKKLMVPLSVLFIAAMLVPIFLKIGESIRAGKNIQQNNEVIAEVNGHKIHRLDLER 61

Query: 59  SWK------QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
                     ++  +  + G   NSE    + + K IL  LVS A L    ED+ ++A  
Sbjct: 62  GVAGVKNKIMQIKSMKAQQGIEDNSEVPDDI-IKKVILGELVSNALLVSSAEDLKIKASD 120

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI-NEKEYIDHYTKMLSRTDVVGMFVGG 171
             +  +I               + F++ L   GI NEKE      + +  + V+      
Sbjct: 121 KEINDKINEIKA-----GVAKGESFLNYLQSMGIANEKELKRMIKESIEVSRVLETQQKA 175

Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
            + S   L +    Y       Y    ++     A P+            ++Y   EY  
Sbjct: 176 HKLSEEDLKKYYEMY------RYTDFQDQTFE-QAKPT-----------IEDYVGKEYSD 217

Query: 232 -ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
            I   L +   ++ KI   +DE++  YE+        E  + ++ +   +
Sbjct: 218 LIRNSLIEKQREKAKIVFKDDEIKKLYEEMVRPIAEKEGYSFKEALMDTR 267


>gi|153010218|ref|YP_001371432.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562106|gb|ABS15603.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
           anthropi ATCC 49188]
          Length = 308

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 18/161 (11%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E    + +   +  + +    + +E    YE N+ ++ S  I     ++        +A 
Sbjct: 112 ETDEDALVRMVIEREVEVPSATREEALRFYENNRHRFTSAPILEASHILIAADPADSQAR 171

Query: 288 QS------------LKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332
           +             +     F  +A E     S     +LG  ++          ++  L
Sbjct: 172 EKARTTASHLASSVIAAPATFASVAHEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERL 230

Query: 333 AKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              G+ TP  I   FG+ I  +        + F  V   IA
Sbjct: 231 T-PGEITPAPIESRFGFHIVRLDRRIEGEELPFDYVADRIA 270


>gi|94500758|ref|ZP_01307287.1| peptidyl-prolyl cis-trans isomerase C [Oceanobacter sp. RED65]
 gi|94427080|gb|EAT12061.1| peptidyl-prolyl cis-trans isomerase C [Oceanobacter sp. RED65]
          Length = 92

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++K A+E  Q L KG+ F +LA++     S     +LG F K  +   +  D +F
Sbjct: 8   HILVKDKKLAEELKQRLAKGEDFGKLAKQYSTCPSKKQGGNLGEFHKGDMVK-AFDDVVF 66

Query: 331 S---LAKKGDFTPVIHGSFGYVIAH 352
               L   G     I   FGY +  
Sbjct: 67  KRPILKVHG----PIKTRFGYHLIK 87


>gi|298373303|ref|ZP_06983292.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298274355|gb|EFI15907.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 448

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 112/318 (35%), Gaps = 50/318 (15%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI---EISNDELQAEYEKNKEKY- 264
           S   L ++F+K  +  R   ++ I   +     ++K I   ++S  E++  +E  K    
Sbjct: 106 SQEKLEEYFKKSINEIREELFEAIKRQMVVQEVQQKIIGNNKMSPSEVRKFFESMKPDSI 165

Query: 265 -FSPEIRTVEQLVFP---NQKEADEAFQSL--------KKGKKFIQLA----EEQGKSLS 308
              P    V+ +         + +E    L        K    F  LA    E++G S  
Sbjct: 166 PTMPATVEVQVIRLEPNITDAQREEVKNRLRDLAERVNKGNADFTMLARLYSEDEGTSKQ 225

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
             SLG F +  + +   ++  F L + G  + V+   +GY I  +   K           
Sbjct: 226 GGSLGFFGRG-MMEPEFSNVAFDLHEPGKVSRVVETIYGYHIIQLVEKKGDRI------- 277

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALG-----TSMDEIS---RREKIVSIDLPLVDF 420
            +  + +   K S+ VK+      + ++        + +E +     +K   ++  L+  
Sbjct: 278 -NCRHILMRPKVSDDVKKATLARLDSISFSIKNNTMTFEEAAMRFSSDKNTRLNGGLMSN 336

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH----TVALPDGSYMWVQIKESIPARD 476
                   E   +P   ++   V+                 L    Y+ V+IK+      
Sbjct: 337 PNSGSSRFEYQNLPA--EIAKEVYNMQKGEISKPFAMIDTQLGREVYVVVKIKD------ 388

Query: 477 RKLEEVLTDVKKDWKTVK 494
            KL+    ++  D++ +K
Sbjct: 389 -KLDSHKANLTDDYQVIK 405


>gi|326204847|ref|ZP_08194701.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985059|gb|EGD45901.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           papyrosolvens DSM 2782]
          Length = 348

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/407 (13%), Positives = 121/407 (29%), Gaps = 79/407 (19%)

Query: 6   RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
           RK     VA   ++   +P      +    + +  + V  VG   +    +    K  + 
Sbjct: 3   RKFVSALVAVALVLTAMIPAGNTFAAATTKTATPETYVAKVGTDNISKEDYNIFLKDAIS 62

Query: 66  MISQKIGFVVNSERARSVGLD------KKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           MI            A    +       K  LDN+V         +               
Sbjct: 63  MIQSYFNSYNVDWNANINNMKASDYAKKLALDNVVDFKIQLSKAKAAKTALTKKETDDF- 121

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
                        + + +++ LA       E                        +   L
Sbjct: 122 -----------NTNMNSYLNSLAA---TTAEQEKIIKNE----------------TGFTL 151

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
            Q K FY    +V  +   +    +    ++  L ++++  KD +       + +ILF  
Sbjct: 152 SQFKSFYN---NVSIVRKFSSQTQSSYKTTDTELKKFYDSNKDKFY---KVIVGHILFLS 205

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298
           +++  +     D                            +K+A++  + + +    F  
Sbjct: 206 NDENNQSTPQKD-------------------------AEAKKKAEDTLKKVNEPNCDFAA 240

Query: 299 LAEEQGKSLSDISLG---SFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           L +E  +    +  G   +  K +       + ++ S  K GD T ++  S+GY +  + 
Sbjct: 241 LVKELSEDPGSVEKGGKYTVMKNHQYVPEFENWAVDSSRKVGD-TGIVKTSYGYHVMKLM 299

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
            +      SF ++K DI +     +  + +    K  +  L    S+
Sbjct: 300 KVY-----SFTQLKDDIKSGYISKRYDDDLNAWRKDKKYKLVKNESV 341


>gi|227325836|ref|ZP_03829860.1| peptidyl-prolyl cis-trans isomerase C [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 93

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   ++EA++    L+KG  F +LA++     S      LG F K  +   +   ++F
Sbjct: 9   HILVDTEQEANDILAQLEKGADFQKLAQKHSTCPSKRNGGDLGEFRKGDMV-PAFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L K       +   FGY +  V
Sbjct: 68  SCELLKP---FGPVKTQFGYHVIKV 89


>gi|268532952|ref|XP_002631604.1| Hypothetical protein CBG20785 [Caenorhabditis briggsae]
 gi|187023057|emb|CAP37736.1| hypothetical protein CBG_20785 [Caenorhabditis briggsae AF16]
          Length = 120

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
            V  ++   Q +A EA + LK G KF ++A +  +    S   LG  ++  +      D+
Sbjct: 28  KVRHILCEKQGKALEAIEKLKSGMKFNEVAAQYSEDKARSGGDLGWMTRGSMVGP-FQDA 86

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L+     K     P +   FGY +  V   K
Sbjct: 87  AFALSNSSCDKPIYTDPPVKTKFGYHVIMVEGKK 120


>gi|294788198|ref|ZP_06753441.1| putative signal peptide protein [Simonsiella muelleri ATCC 29453]
 gi|294483629|gb|EFG31313.1| putative signal peptide protein [Simonsiella muelleri ATCC 29453]
          Length = 292

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 88/249 (35%), Gaps = 10/249 (4%)

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN-NRHVPAIADPSNAV 212
                  + +  G    G +    + ++        +    + L+ +    A    +   
Sbjct: 39  ERRAENVQKNTQGQISDGPQLRQFITNELITEQLVVQEAKRLKLDKSSDYQAAEAEALKQ 98

Query: 213 LTQWFEKYKDNYRA--PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
                   + +++    +Y+    +L       K+  IS    Q +Y + K +Y      
Sbjct: 99  AKAQGLDKQADFKQNWADYQNRLLMLAYAANLAKQQPISEAAAQQQYNQIKSRYAGSSEI 158

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--- 327
            + ++V     +A+ A   L K KKF  +A++   S S  + G    EY+    L D   
Sbjct: 159 QLGEIVTNKPADAEAAINDLTKKKKFSDVAKKYSMSKSSQTSGGIVPEYVALPDLKDGNN 218

Query: 328 ----SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
               ++  L+K       +      ++ +V++ +     +F E+K  I  QM   + S  
Sbjct: 219 LVYQAVNGLSKGQFTKTPVKDGNVSLVLYVNDKRAINVPTFNEMKASIVQQMEDEQLSLA 278

Query: 384 VKEDYKRLE 392
           +    K+ +
Sbjct: 279 IDNLGKKAK 287



 Score = 40.4 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 28/176 (15%)

Query: 26  LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
           +++ LS +LF    ++TVV+V   K+  S      +        +I        +    L
Sbjct: 12  VLFALSGSLF----AATVVTVNGVKIDSSDVERRAENVQKNTQGQI--------SDGPQL 59

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHG--RVWGEIARSPLFHGKDNKFSHDV----FVS 139
            + I + L++   + Q  + + L+          E  +     G D +         + +
Sbjct: 60  RQFITNELITEQLVVQEAKRLKLDKSSDYQAAEAEALKQAKAQGLDKQADFKQNWADYQN 119

Query: 140 RL----------AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
           RL           ++ I+E      Y ++ SR         G   +N   D     
Sbjct: 120 RLLMLAYAANLAKQQPISEAAAQQQYNQIKSRYAGSSEIQLGEIVTNKPADAEAAI 175


>gi|152996616|ref|YP_001341451.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
           MWYL1]
 gi|150837540|gb|ABR71516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
           MWYL1]
          Length = 92

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   + EA+     L KG  F +LA++     S      LG F K  +   +   ++F
Sbjct: 8   HILVKTKVEAESLKLKLDKGADFHKLAKQFSTCPSGKKGGDLGEFRKGDMV-PAFDKAVF 66

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
              L K       +   FG+ +  V
Sbjct: 67  GGPLYK---IQGPVKTQFGFHLIKV 88


>gi|294338549|emb|CAZ86878.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase, surA
           [Thiomonas sp. 3As]
          Length = 472

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/477 (12%), Positives = 143/477 (29%), Gaps = 83/477 (17%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
           +       VG Q +    +    + E      +         A    L  ++L+ ++   
Sbjct: 65  TSDGIAAIVGNQVIT--DYDLQLRVEATRQQAQAAGATLPSAA---QLRSQVLNQMIDEV 119

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
            L Q+ E IG+  +   +   IA+       +NK +     S + +EG+    Y D   +
Sbjct: 120 ALAQYAEQIGMGVNQDTLDRAIAQVAS----NNKLTVPELRSAIEKEGMGWSTYRDQLKR 175

Query: 158 MLSRTDVVGMFVGGM-RPSNLLLDQAKRFYFENRSVDYIVLNNRHV--PAIADPSNAVLT 214
            +  + +    +  +   S   +D+         +      +   +  P   + + A + 
Sbjct: 176 EILISRLRERSMAQLPTVSESEIDEFLSKQDAAAASPQAAYDIAQIFLPVAQNATEAQVA 235

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                                       ++KI+  + +L+                    
Sbjct: 236 A--------------------------VKQKIDAIDAKLK-------------------- 249

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
                   A  AF  L       + A+          LG      +P     D++ +L +
Sbjct: 250 --------AGAAFAQLATQDSQGEGAKR------GGDLGMRPANRLP-TLFVDTVRNL-Q 293

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G  +PVI  + G+ I  +  +          ++ ++  ++ ++ +++  +   K   + 
Sbjct: 294 PGQISPVIRSAAGFHILKLLQVSGETAAPTTAMQSEVR-EIVLSASTDAQRIRAKAELDS 352

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           +A      ++   EK   +       A     G  +      + +L     + +P     
Sbjct: 353 IAQAVQNGKVQFSEKARELSQDPATAAKGGALGWVLPG--QLDPVLDAALQRLNPGDVSA 410

Query: 455 TVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
            + + +   +   +        R LE  +     ++  +  K AE+       +   
Sbjct: 411 PIVMGNKVVLLQLVDR----AVRPLEASQKRALAREVLQRQKAAEDFDELVRDVRAR 463


>gi|237806951|ref|YP_002891391.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis
           DSM 9187]
 gi|237499212|gb|ACQ91805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis
           DSM 9187]
          Length = 93

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   + +A +  + L  G  F QLA++     S      LG F K  +   S  +++F
Sbjct: 9   HILVKTEAQALDIMKQLAAGADFQQLAKKYSTCPSKKRGGDLGEFKKGDMV-ASFDNAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L +       +   FGY I  V
Sbjct: 68  SCELLQP---VGPVKTRFGYHIIKV 89


>gi|115360188|ref|YP_777326.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
 gi|115285476|gb|ABI90992.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
          Length = 245

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 82/232 (35%), Gaps = 14/232 (6%)

Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
           V G+  +   +D+A R      +          + A      A L Q ++       A E
Sbjct: 4   VNGVPITQAQVDEAVRLSKAPDTPALRAALKNQLIARELFRQAALKQHYDTKPQVVAAVE 63

Query: 229 YKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
             + ++     + ++ K + +++ +++A Y+         E +    +   +   A +  
Sbjct: 64  QAKALAMTQAYLRDQVKPVPVTDADVKARYDAIVATLGENEYKP-SVIAVNDADTAKQII 122

Query: 288 QSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVS--------LADSIFSLAKKG 336
             L+KG+ F  LA E  K   +    +L   S +   +          LA+++  L + G
Sbjct: 123 ARLRKGEDFGALAREFSKGPSAAQSGALNWISFKTPIEAGHTQNWPQQLAEALVKLPQGG 182

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
                +     Y I    + + +   +F + K  +  Q+    A EK     
Sbjct: 183 LTREPVQIGDMYWIVRADDKRQTQVPTFDQAKDTLRQQL-EQVAVEKATAQV 233


>gi|170585656|ref|XP_001897598.1| parvulin-type peptidyl-prolyl cis-trans isomerase, Bm parvulin
           [Brugia malayi]
 gi|158594905|gb|EDP33482.1| parvulin-type peptidyl-prolyl cis-trans isomerase, Bm parvulin
           [Brugia malayi]
          Length = 126

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q +A EA + LK G KF ++A    +  +     LG  ++  +   +  D+
Sbjct: 34  KVRHILCEKQGKAMEAIEKLKSGSKFNEVAANYSEDKAKLGGDLGWMTRGSMVG-TFQDA 92

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L            P +   FGY I  V   K
Sbjct: 93  AFALPNSTVDRPVYTDPPVRTQFGYHIIMVEAKK 126


>gi|315038920|ref|YP_004032488.1| peptidylprolyl isomerase [Lactobacillus amylovorus GRL 1112]
 gi|325957341|ref|YP_004292753.1| peptidylprolyl isomerase [Lactobacillus acidophilus 30SC]
 gi|312277053|gb|ADQ59693.1| peptidylprolyl isomerase [Lactobacillus amylovorus GRL 1112]
 gi|325333906|gb|ADZ07814.1| peptidylprolyl isomerase [Lactobacillus acidophilus 30SC]
          Length = 301

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 82/255 (32%), Gaps = 28/255 (10%)

Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
             G +      +    +++              + L +       E +   Y        
Sbjct: 25  SNGGSNSTVASYKGGKITQQQYYDEMKKSQAGKSTLANMIINRALEQQYGKY-------- 76

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEK 259
                 S+  + + +  YK  Y +     +          ++ ++   +S   L+   + 
Sbjct: 77  -----VSSKKVDKQYNNYKKQYGSQFSAVLQQNGMTASSFKENLKTNLLSEQALKHIKKI 131

Query: 260 NKEKYFSP-----EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-- 312
           +K++            TV+ ++   +  A    + LK GK F  LA++     +  +   
Sbjct: 132 SKKQEQQAWKSYQPKVTVQHILVAKKSTAQSIIKQLKDGKSFKSLAKKYSLDTATKNKAG 191

Query: 313 ---GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
                 S +   D S   + F L      +  +    GY +  + +  P+    F + KK
Sbjct: 192 KLPAFDSTDNTLDSSFKTAAFKLKTGEVTSTPVKSQSGYHVIKMIS-HPAKGK-FADHKK 249

Query: 370 DIANQMRITKASEKV 384
            I +++  + A ++ 
Sbjct: 250 AIDDEIYASMAQDQA 264



 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 49/168 (29%), Gaps = 33/168 (19%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           +   +STV S    K+    +                     +  +     K  L N++ 
Sbjct: 26  NGGSNSTVASYKGGKITQQQYY--------------------DEMKKSQAGKSTLANMII 65

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L+Q     G      +V     +   +  +        F + L + G+    + ++ 
Sbjct: 66  NRALEQQ---YGKYVSSKKVDK---QYNNYKKQYGS----QFSAVLQQNGMTASSFKENL 115

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
              L     +       + S     QA + Y    +V +I++  +   
Sbjct: 116 KTNLLSEQALKHIK---KISKKQEQQAWKSYQPKVTVQHILVAKKSTA 160


>gi|330827221|ref|YP_004390524.1| chaperone surA [Alicycliphilus denitrificans K601]
 gi|329312593|gb|AEB87008.1| Chaperone surA [Alicycliphilus denitrificans K601]
          Length = 471

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/402 (10%), Positives = 112/402 (27%), Gaps = 66/402 (16%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +  +      ++    +S + G  +         L K++L+ L+      Q 
Sbjct: 70  VAVVNSEPITNNEVRQRAERVAQQLSGQ-GAAMPPHEV----LVKEVLERLILEKIQVQL 124

Query: 103 IEDIGLEADHGRVWGEIARSPLFHG-----------KDNKFSHDVFVSRLARE----GIN 147
            ++ G++ D   V                         +  S + F   L  +     + 
Sbjct: 125 AKEGGIKVDDYAVNQAEQNVAR-QNDVSVDEMHRRLAADGISKERFREELRNQLLALRVR 183

Query: 148 EKEYIDHYT-KMLSRTDVVGMFVGGMRPSNLLL----------------DQAKRFYFENR 190
           E++         L     +        P  + +                + A+R      
Sbjct: 184 ERDVESRVRVSDLEVDQYLQDQQKTAGPGKMEINLGHILVKVPEGASPEEVARRAARAQE 243

Query: 191 SVDYIVLNNRHVPAIADPSN--------AVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
            +D +         + + S+         +  +  ++Y + +     +     +      
Sbjct: 244 VLDKLRAGGDFGVLVQEYSDVPEGSGGGLLGLRPLDRYPELFVTAVQQAAVGSIVGPLRS 303

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK----- 292
                I    L+                    ++       ++++A E  + L++     
Sbjct: 304 PAGFHI----LKVVDRSQGGVPTMAVQSHARHILLRVGSGLSERQAAERLEDLRQRVLRG 359

Query: 293 GKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
              F  LA E    G +     LG             +++ +L + G+ +  +   FG  
Sbjct: 360 QADFATLAREYSQDGSAKDGGDLGWAGPGRYV-PEFQEALNAL-RPGEISQPVVSRFGVH 417

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +  +   + +     ++ +  + + +R  K  E      +  
Sbjct: 418 LIQLLERREAKLTQREQ-RDMVRDAVREKKLDEAFTTWIQEA 458



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/393 (11%), Positives = 104/393 (26%), Gaps = 46/393 (11%)

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV---LNNRHVPAIA-- 206
                       + G          L+ +  +R   E   V       +           
Sbjct: 82  EVRQRAERVAQQLSGQGAAMPPHEVLVKEVLERLILEKIQVQLAKEGGIKVDDYAVNQAE 141

Query: 207 -------DPSNAVLTQWFEKY---KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
                  D S   + +        K+ +R     ++  +     + E ++ +S+ E+  +
Sbjct: 142 QNVARQNDVSVDEMHRRLAADGISKERFREELRNQLLALRVRERDVESRVRVSDLEV-DQ 200

Query: 257 YEKNKEKYFSPEIRTVE--QLVFPNQ------------KEADEAFQSLKKGKKFIQLAEE 302
           Y ++++K   P    +    ++                  A E    L+ G  F  L +E
Sbjct: 201 YLQDQQKTAGPGKMEINLGHILVKVPEGASPEEVARRAARAQEVLDKLRAGGDFGVLVQE 260

Query: 303 QGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     G    +       L  +    A  G     +    G+ I  V +      
Sbjct: 261 YSDVPEGSGGGLLGLRPLDRYPELFVTAVQQAAVGSIVGPLRSPAGFHILKVVDRSQGGV 320

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA----LGTSMDEISRREKIVSIDLPL 417
            +   V+    + +    +    ++  +RLE+              ++R           
Sbjct: 321 PTMA-VQSHARHILLRVGSGLSERQAAERLEDLRQRVLRGQADFATLAREYSQDG----S 375

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
               G          +P  ++ L  +        +     +       +Q+ E   A+  
Sbjct: 376 AKDGGDLGWAGPGRYVPEFQEALNAL-----RPGEISQPVVSRFGVHLIQLLERREAKLT 430

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
           + E+    V+   +  K  E  ++   +     
Sbjct: 431 QREQ-RDMVRDAVREKKLDEAFTTWIQEARARA 462


>gi|322788443|gb|EFZ14112.1| hypothetical protein SINV_03411 [Solenopsis invicta]
          Length = 129

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G+KF ++A    +    S   LG  ++  +      D+
Sbjct: 37  KVRHILCEKQSKILEALEKLKAGQKFNEVAATYSEDKARSGGDLGWMTRGSMVGP-FQDA 95

Query: 329 IFSLAKKGDFTPVI-----HGSFGYVIAHVSNIK 357
            F+L      +PV         FGY I  V   K
Sbjct: 96  AFALPISSLASPVYTDPPVKTKFGYHIIMVEGKK 129


>gi|227537536|ref|ZP_03967585.1| peptidyl-prolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242673|gb|EEI92688.1| peptidyl-prolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 458

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 65/401 (16%), Positives = 136/401 (33%), Gaps = 62/401 (15%)

Query: 136 VFVSRLAREGINEKEYIDHY---TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            +   LA+ G++  E    Y     +  +       +  +  S   +D            
Sbjct: 46  QYSQNLAQ-GMSPNEDFKCYILQQLLTQKLLAQQAVLDSIEVSESEVDDNLNNRL----- 99

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK----KIEI 248
                   +V          L  +  +    Y+  E +          + ++    KI++
Sbjct: 100 --------NVMTRQAGGKERLESFLNRSLLQYK-EEMRTSVAEQLKAQKMQQNIVQKIDV 150

Query: 249 SNDELQAEYE---KNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKKF 296
           +  E++  +E   K+   YF  E+   E +++P         ++K A++  + +  G  F
Sbjct: 151 TPLEVKRYFEGLNKDSLPYFDTEVEIGEIVMYPVLTKEEKEASRKRAEDLRKQIVDGSDF 210

Query: 297 IQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A    E++G +++   LG  +++       +   F L K G+ + V    +G+    
Sbjct: 211 GTIARLYSEDKGSAVAGGDLGFSTRDNYVK-EFSAVAFKL-KPGEISQVFETEYGFHFLQ 268

Query: 353 VSNIKPSFTVSFQEVKKD-IANQMRITKAS-EKVKEDYKRL-EEFLALGTSMDEISRREK 409
           V   +       +EV+   I   ++ T AS E+ K     L ++ +         + +  
Sbjct: 269 VLERRG------EEVRARHILVSIKPTNASLERTKVKMDSLYQKLINKKIDFYNAATQYS 322

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA---------LPD 460
               D     F G  V  +  + +    +L   VF   DPL                   
Sbjct: 323 ----DNKETKFNGGMVTDQNRSTLIPVNKLEASVFTAIDPLKAGEYSQPTLFQEEGPAGK 378

Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
             Y    +K  IP     L++  + +K+     KT  ++S 
Sbjct: 379 SGYRISFLKTRIPPHKANLDQDFSKIKEAASEDKTRRKLSE 419


>gi|194366009|ref|YP_002028619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia R551-3]
 gi|194348813|gb|ACF51936.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia R551-3]
          Length = 299

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 72/207 (34%), Gaps = 26/207 (12%)

Query: 225 RAPEYKRIS-YILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           +APE  R+S   +      E  IE    ++++ +  +E+N E++ SP+   +  ++    
Sbjct: 97  QAPEGNRVSDEEVLIQQLLEDAIEDRVPTDEDCRRYFEQNPERFRSPDRVRLRHILLAAP 156

Query: 281 KEADEAFQSLKK---GKK-----------FIQLAEEQG---KSLSDISLGSFSKEYIPDV 323
             AD+          G++           F   A        S     LG   +      
Sbjct: 157 --ADDVAGRFAARTEGERLVGLLKESPHLFADFALRHSRCPSSSEGGDLGWLQRGQTT-P 213

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
                +F L + G     +   +GY +  V   +      F+ V   + + + +     +
Sbjct: 214 EFDRQVFRLRE-GLAGFPVESRWGYHVVCVDAREEGQPQPFEAVLPQLRDYLELQVRQRE 272

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKI 410
           V+    +L+E       +DEI     I
Sbjct: 273 VQAYLLQLQE-RYPVRGLDEIDAEADI 298


>gi|220930452|ref|YP_002507361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulolyticum H10]
 gi|220000780|gb|ACL77381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulolyticum H10]
          Length = 363

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 101/278 (36%), Gaps = 44/278 (15%)

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRT---DVVGMFVGGMRPSNLLLDQAKRFYFEN 189
               F      +G   KE I   T    +     ++     G++     LD  +    + 
Sbjct: 74  DPAKFDWNQKYQGSTAKEQIKKATLDSIQEIKIQLIKAKEAGIKLEKTDLDNIEAAINQR 133

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
                     ++       ++  L Q +     +Y+   YK +      +  +  K+++ 
Sbjct: 134 ---------IQNAGGSRSQADKQLKQDYGVSLADYKEV-YKELVLSQKYIESERNKVKVP 183

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-----------------EADEAFQSLKK 292
           ++E++ +Y+ +K  Y   +  TV  ++   Q                  +A+   + +++
Sbjct: 184 DEEVKKQYDDHKADY---DKVTVTHILIATQDLQTGAAFTEGKKKEAKDKAENLLKQIQE 240

Query: 293 GKKFIQLA------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           G     LA      ++Q  ++++  + +F K  +      D  F+  K GD T ++  S+
Sbjct: 241 GADMQALAEKNSDDKDQNGAVNNKGVYTFVKGQMV-PQFEDWAFANRKAGD-TGIVETSY 298

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
           GY +      + +    + +VK  I + +   K  ++ 
Sbjct: 299 GYHVMRFEKREETK---YDDVKDQIKSTILNKKFEDEF 333


>gi|298370084|ref|ZP_06981400.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281544|gb|EFI23033.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 290

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 66/161 (40%), Gaps = 7/161 (4%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
                K+  +   +++  Y    + Y   +   + Q+   + ++A +A + L+  K F  
Sbjct: 125 AMHIAKQNPVQEKDIKTAYNDFSKFYKGTQEVQLGQIAARSNEDAQKAIKDLEAKKSFAN 184

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLAD-------SIFSLAKKGDFTPVIHGSFGYVIA 351
           + ++          G  ++ Y+P   L         +I  L K G  +  +     Y + 
Sbjct: 185 VLKQYSVDEQAKKAGGIARGYVPLKDLEQSAPPLYAAIKDLKKGGFTSAPLPNGNVYSVF 244

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           ++++ +     S++E+K +I ++++ ++    +    ++ +
Sbjct: 245 YINDRRDIKVPSYEEMKNEIGSELQASRIDAAIGALMQKAD 285


>gi|255011715|ref|ZP_05283841.1| putative exported isomerase [Bacteroides fragilis 3_1_12]
 gi|313149550|ref|ZP_07811743.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
 gi|313138317|gb|EFR55677.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
          Length = 517

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/436 (13%), Positives = 131/436 (30%), Gaps = 60/436 (13%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE-----------QLVFPNQK 281
           +Y                   +  Y++ K +  S E+R +              +   Q 
Sbjct: 91  NYHRSLSKSYLTDSSAEEACARKLYDQMKSRSISGEVRVMHIFRYLPQTALPHHLREAQA 150

Query: 282 EADEAFQSLKKG--KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
             D  +  LK      F  L ++     ++  +              +  FSL K G+++
Sbjct: 151 LMDSLYNVLKTNPDTDFRTLVDQYSDDKAESWISWLQTP----QEFEEVAFSL-KDGEYS 205

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE-DYKRLEEFLALG 398
                  G  I  V+  +      F++++  +  ++     ++K  E    +L+E  +  
Sbjct: 206 QPFFTPKGLHIVKVTGRRE--LPPFEQIRDRLIRKLSYRPGADKGTEILVNKLKE--SYR 261

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            + D+ +  E +         F    + GK      ++        G    L      ++
Sbjct: 262 YTPDKAAMEELLSQGKTSRTLFT---LDGKNFTGKDFERFAAAHPMGTKRQLDAFVVKSI 318

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLT-DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
            D  Y    +++  P   R L+E     +       +T +   + +  L   + +   ++
Sbjct: 319 LD--YENSHLEQKHPEFRRTLQEHRDHLLLAAITRRETHQVSLADSVALKNFFKEHRTDY 376

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFG-------YDGISQVFSGPVE----MVKCFPIE 566
                    ++L       + +  KF          D I   F+ P       ++     
Sbjct: 377 NWDSPRYRGAVLHGTHKKTLKSARKFLKKLPEEEWKDAIRLTFNTPASPAIIRIEQGTFA 436

Query: 567 NGLSYVVFKVT-------------------NSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
            G +  V K+                      K GP   K+  +S L +     L     
Sbjct: 437 EGDNVFVDKLVFKKGNFEPLKSYPFTVVLGEKKKGPESYKE-IVSRLIEDYQNHLDALWT 495

Query: 608 AYLKSQYSVTVHDNLI 623
             L++   V ++  ++
Sbjct: 496 ERLRASAKVEINQEVL 511


>gi|163858778|ref|YP_001633076.1| peptidyl-prolyl cis-trans isomerase C [Bordetella petrii DSM 12804]
 gi|163262506|emb|CAP44809.1| peptidyl-prolyl cis-trans isomerase C [Bordetella petrii]
          Length = 93

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              +   ++   + + +E   +++ G  F Q+A E     S     +LG+F    +    
Sbjct: 2   AQASARHILVSTEAKCNELKAAIEGGADFAQVARENSSCPSARDGGNLGTFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A  G     +   FGY +  V++ +
Sbjct: 61  FDTVVFS-APVGVVQGPVKTQFGYHLVEVTDRQ 92


>gi|85058404|ref|YP_454106.1| peptidyl-prolyl cis-trans isomerase SurA [Sodalis glossinidius str.
           'morsitans']
 gi|121956483|sp|Q2NVX4|SURA_SODGM RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|84778924|dbj|BAE73701.1| survival protein SurA precursor [Sodalis glossinidius str.
           'morsitans']
          Length = 431

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/367 (10%), Positives = 105/367 (28%), Gaps = 53/367 (14%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG----- 127
              N +      L ++ILD L+    + Q  +   +     ++   I             
Sbjct: 54  QEANQQLPDDTTLRRQILDRLIMDNIILQLAQRTNITISDEQLDQAIGNIAA-QNHMSLD 112

Query: 128 ------KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS---------RTDVVGMFVGGM 172
                   +   ++ + +++ +E +  +       + ++            +      G 
Sbjct: 113 QLRSRLPYDGIDYNTYRTQIRKEMLIAEVRNGEVRRRVTILPQEVESLAQQIAAQTGNGA 172

Query: 173 ----------RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
                      P N   DQ  +      S+     +      +A   +A           
Sbjct: 173 EFNLSHILIPLPENPTQDQLDKAEELATSIVEQSKSGADFGKLAITYSADAQALKGGQMG 232

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR-----TVEQLVF 277
             +  E   +        +K   +      +     K  +     +           ++ 
Sbjct: 233 WGKLEELPSLFAARLQGAQKGSIVGPIRSGVGFHILKVNDIRGGDQKVAVTEVHARHIML 292

Query: 278 ---------PNQKEADEAFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSKEYIPDV 323
                      + + ++    +K G+  F   A+    + G +     LG  S +   D 
Sbjct: 293 RTSVVMTDQQARAKLEDIAAQIKSGRISFAAAAKQLSEDPGSANQGGDLGWSSADAF-DP 351

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           +  +++  L KKG+ +  +H SFG+ +  + + +     +    K      +   K +E+
Sbjct: 352 AFRNALMHL-KKGEISTPVHSSFGWHLIQLIDTR-QVDRTDAAQKDRAYRLLFNRKFAEE 409

Query: 384 VKEDYKR 390
            +   + 
Sbjct: 410 AQTWMQE 416



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 95/308 (30%), Gaps = 35/308 (11%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278
           + YR    K +        E  +++ I   E+++  ++   +  +     +  ++ P   
Sbjct: 126 NTYRTQIRKEMLIAEVRNGEVRRRVTILPQEVESLAQQIAAQTGNGAEFNLSHILIPLPE 185

Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328
                     ++ A    +  K G  F +LA         +  G      + +  SL  +
Sbjct: 186 NPTQDQLDKAEELATSIVEQSKSGADFGKLAITYSADAQALKGGQMGWGKLEELPSLFAA 245

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKD---IANQM--RITKASE 382
               A+KG     I    G+ I  V++I+      +  EV      +   +     +A  
Sbjct: 246 RLQGAQKGSIVGPIRSGVGFHILKVNDIRGGDQKVAVTEVHARHIMLRTSVVMTDQQARA 305

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
           K+++   +++            +   K +S D    +  G        A  P     L  
Sbjct: 306 KLEDIAAQIKSGRI------SFAAAAKQLSEDPGSANQGGDLGWSSADAFDPAFRNALMH 359

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEEVS 500
           +        K   ++ P  S     + + I  R  DR          +     K AEE  
Sbjct: 360 L--------KKGEISTPVHSSFGWHLIQLIDTRQVDRTDAAQKDRAYRLLFNRKFAEEAQ 411

Query: 501 SKANQLVL 508
           +   +   
Sbjct: 412 TWMQEQRA 419


>gi|145299728|ref|YP_001142569.1| peptidyl-prolyl cis-trans isomerase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852500|gb|ABO90821.1| peptidyl-prolyl cis-trans isomerase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 92

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 11/88 (12%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
            + ++   +K+  E  + L KG  F Q+A+      S      LG FSK  +      D+
Sbjct: 6   AQHILVKTEKQCLEIKEKLAKGADFGQMAKRFSTCASSKRSGDLGEFSKGDMVKP-FDDA 64

Query: 329 IFSLAKKGD---FTPVIHGSFGYVIAHV 353
           +F    KG+       +   FG+ +  V
Sbjct: 65  VF----KGELLTVLGPVRTKFGFHLIKV 88


>gi|115360451|ref|YP_777588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
 gi|115285779|gb|ABI91254.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
          Length = 262

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 18/171 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSL-KKGKKF 296
           E    + +  Y ++  ++   +I     ++F           ++ A+ A   +      F
Sbjct: 86  EPDRADCERYYAQHPARFRRNDIVYASHVLFAVTDRVPLAPLRQRAERALADVVAAPDTF 145

Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             +A E      +    SLG   +          ++F     G    ++   FG+ I  +
Sbjct: 146 EAVARESSNCPSAQVGGSLGQLLRGDTV-PEFEAALFDTDGLGVLPKLVDTRFGFHIVRI 204

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
               P   V F E    IA  +   +  ++    Y  +   LA G  ++ +
Sbjct: 205 ERRIPGDVVPFDEAAGQIAAYL-SERVRQRAMRQYVAI---LAAGARVEGV 251


>gi|304398127|ref|ZP_07380002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB]
 gi|304354413|gb|EFM18785.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB]
          Length = 93

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +  A E    L KG  F +LA++     S      LG F +  +   +   ++F
Sbjct: 9   HILVKEEALAKEILAKLAKGGNFQELAKKHSTCPSGRKGGDLGEFRQGQMV-PAFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           +  L         +   FGY I  V
Sbjct: 68  TCPLLTP---YGPVKTGFGYHIIKV 89


>gi|330821358|ref|YP_004350220.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           gladioli BSR3]
 gi|327373353|gb|AEA64708.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           gladioli BSR3]
          Length = 264

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 55/171 (32%), Gaps = 18/171 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------QKEADEAFQSLKKGKKF 296
           + +  + +  Y  + E++   E+     ++F            ++      + L   ++F
Sbjct: 88  KPTEADCRRYYTHHPERFRQGELVHASHILFAVTERVPLAPLRERAEAALAEVLAAPERF 147

Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             LA E      +    SLG   +          ++F     G    +++   G+ I  +
Sbjct: 148 EALARESSNCPSAAVGGSLGQLLRGDCV-PEFEAALFGNEALGVLPGLVNTRHGFHIVRI 206

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
               P     F+ V   IA  +   +        Y  +   LA    ++ I
Sbjct: 207 ERRVPGELQPFEAVSGRIAGFLA-ERVRRDAMHQYVAI---LAGAARIEGI 253


>gi|158429505|pdb|2PV3|A Chain A, Crystallographic Structure Of Sura Fragment Lacking The
           Second Peptidyl-Prolyl Isomerase Domain Complexed With
           Peptide Nftlkfwdifrk
 gi|158429506|pdb|2PV3|B Chain B, Crystallographic Structure Of Sura Fragment Lacking The
           Second Peptidyl-Prolyl Isomerase Domain Complexed With
           Peptide Nftlkfwdifrk
          Length = 299

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 96/336 (28%), Gaps = 74/336 (22%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
            + S K       Q++             L  +I++ L+    + Q  + +G++    ++
Sbjct: 25  LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 76

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              IA       K N  + D   SRLA +G+N   Y +   K +  ++V           
Sbjct: 77  DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRN--------- 123

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
                                     V          +    ++  +   A     +S+I
Sbjct: 124 ------------------------NEVRRRITILPQEVESLAQQVGNQNDASTELNLSHI 159

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           L  + E     +++  E                             +A       + G  
Sbjct: 160 LIPLPENPTSDQVNEAE----------------------------SQARAIVDQARNGAD 191

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           F +LA         ++ G      I +   +     S AKKGD    I    G+ I  V+
Sbjct: 192 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 251

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +++          K      +   K SE+     + 
Sbjct: 252 DLRGESKNISAAQKDRAYRMLMNRKFSEEAASWMQE 287


>gi|218885414|ref|YP_002434735.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756368|gb|ACL07267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 94

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++   +   +E    +  G+ F ++A    K  S      LG F +  +      +
Sbjct: 5   KARHILVDTEDACNELKARILAGEDFAEVARAHSKCPSGRRGGDLGEFPRGAMV-PEFDE 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +F+  + G     +   FG+ +  V+  
Sbjct: 64  VVFT-GEVGTVLGPVRTQFGHHLIEVTAR 91


>gi|134094865|ref|YP_001099940.1| putative peptidyl-prolyl cis-trans isomerase (NifM related)
           [Herminiimonas arsenicoxydans]
 gi|133738768|emb|CAL61815.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Herminiimonas arsenicoxydans]
          Length = 248

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 19/169 (11%)

Query: 240 HEKEKKIEISNDELQA---EYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAF 287
               +++ + + +  A    Y    +++ S E+     ++F           ++  +   
Sbjct: 62  ALFAQEVRVPDADEAACATFYRNQPQRFTSGELVEARHILFQVTPSVPLELLRETGEAVL 121

Query: 288 QSLK-KGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VI 342
             L+   ++F +LA E     S     +LG  ++           +F L + G+    ++
Sbjct: 122 AELRVHPERFAELAREYSNCASGTVGGNLGQLTRGQTV-PEFEALVFRLPE-GELADRLL 179

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              FG  I  V        V  + VK  IA+ +        V +  + L
Sbjct: 180 ETRFGLHIVQVLRRVAGEVVPLEAVKAQIADHLSRQAWQRAVHQYLQIL 228


>gi|330684763|gb|EGG96458.1| PPIC-type PPIASE domain protein [Staphylococcus epidermidis VCU121]
          Length = 330

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 76/203 (37%), Gaps = 42/203 (20%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----------NQKEADEAFQ 288
                KI++S+ E++               +    ++             + K+A +  +
Sbjct: 124 ELLNDKIKVSDKEIKDN------------TKKASHILIKVKSKDSDKEGLSDKKAKQKAE 171

Query: 289 SLKK-----GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
            ++K       KF ++A+    ++  +  D SLG  +K  + + S   ++F L K+G+ +
Sbjct: 172 EIQKEVSKDPSKFGEIAKKESMDKSSAKKDGSLGYVTKGQMME-SFDKALFKL-KEGEVS 229

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS---EKVKEDYKRLEEFLA 396
            V+   +GY I             F   K ++ +++   K     + + + YK + +   
Sbjct: 230 KVVKTDYGYHIIK-----ADKETDFNSEKSNLKSKILEQKIQKDPKLLTDAYKEILDEYK 284

Query: 397 LGTSMDEISRREKIVSIDLPLVD 419
           +     +I +      +D   + 
Sbjct: 285 VDYKDRDIKKAVDDTILDPDKIK 307


>gi|224536048|ref|ZP_03676587.1| hypothetical protein BACCELL_00912 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522331|gb|EEF91436.1| hypothetical protein BACCELL_00912 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 513

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 26/219 (11%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-----------EQLVFPNQKE 282
           Y             +S    +  Y+K K    + +IR               ++   +  
Sbjct: 91  YRRQLAKAYLTDESVSELAARQVYDKMKANNRAGQIRVSHIFKFLPQTVTSHVLRSAEAR 150

Query: 283 ADEAFQSLKKG-KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
            D  + +L+ G   F +             +          V   D +F+L K+G+ +  
Sbjct: 151 MDSLYAALQNGQADFDECVRNFSDEKKSFWVSWLQ----MPVEFEDVVFAL-KQGEISRP 205

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDI----ANQMRITKASEKVKEDYKRLEEFLAL 397
                G  I      K    + F++VK +I    + +  + + +E + E  K+  ++ A 
Sbjct: 206 FFTPQGIHIVKAIERKE--ILPFEKVKDEIMRRQSRRYGMDRGTEALVEKLKKEYQYTAD 263

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
            T +DE+  + +    D  L    G++  GK  AA    
Sbjct: 264 KTGVDELLSKGQ---TDKRLFTLDGREYTGKMFAAFAAS 299


>gi|190574687|ref|YP_001972532.1| putative rotamase/peptidyl-prolyl cis-trans isomerase family
           protein [Stenotrophomonas maltophilia K279a]
 gi|190012609|emb|CAQ46237.1| putative rotamase/peptidyl-prolyl cis-trans isomerase family
           protein [Stenotrophomonas maltophilia K279a]
          Length = 299

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 72/207 (34%), Gaps = 26/207 (12%)

Query: 225 RAPEYKRIS-YILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           +APE  R+S   +      E  I+    S+++ +  +E+N E++ SP+   +  ++    
Sbjct: 97  QAPEGNRVSDEEVLIQQLLEDAIKDRVPSDEDCRRYFEQNPERFRSPDRVRLRHILLAAP 156

Query: 281 KEADEAFQSLKK---GKK-----------FIQLAEEQG---KSLSDISLGSFSKEYIPDV 323
             AD+          G++           F   A        S     LG   +      
Sbjct: 157 --ADDVAGRFAARTEGERLVGLLKESPHLFADFALRHSRCPSSSEGGDLGWLQRGQTT-P 213

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
                +F L + G     +   +GY +  V   +      F+ V   + + + +     +
Sbjct: 214 EFDRQVFRLRE-GLAGFPVESRWGYHVVCVDAREEGQPQPFEAVLPQLRDYLELQVRQRE 272

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKI 410
           V+    +L+E       +DEI     I
Sbjct: 273 VQAYLLQLQE-RYPVRGLDEIEAEADI 298


>gi|260891097|ref|ZP_05902360.1| putative chaperone SurA [Leptotrichia hofstadii F0254]
 gi|260859124|gb|EEX73624.1| putative chaperone SurA [Leptotrichia hofstadii F0254]
          Length = 608

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/468 (11%), Positives = 140/468 (29%), Gaps = 50/468 (10%)

Query: 2   LEIIRKASRTW--VAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSS 55
           + + R   +    V+ + + +  +  LI G+    ++   +++    + +V   K+    
Sbjct: 1   MGLFRSHKKAIQIVSAVMIGIFGIAMLITGILFLKNNVFGAMNHREVIATVNGAKIYRDD 60

Query: 56  FINS---WKQELGMISQKIGFVVNSERARSVGLDKK--------ILDNLVSGATLDQFIE 104
           F       K +L  I+Q+    ++     +  +           +L  +++   L     
Sbjct: 61  FDRESYGLKAQLSEINQQKIQQLSQVGVSAENIKNIPDNIINEYVLQLMINKEVLLSSAH 120

Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
           ++G++     +  E         K ++ +   F   L   G N   +     K +    +
Sbjct: 121 NLGIKVSGAEINKEFNNYQ----KQSQMNRKEFADHLRNRGYNITSF----KKAIKDEKI 172

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV--------LTQW 216
           +      +  ++ + D+  +  +E        LN             +        L  +
Sbjct: 173 IEKMREKIFSNDKVTDEEIKKAYERNKYTQAFLNQDFEDVKEQIRENMTQDKNIMILKSY 232

Query: 217 FEKYKDN----YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
             K K+     ++  ++++I   +     +    + +N+ +  +      +         
Sbjct: 233 IAKAKEKTKIVFKNKDFEKIYASMTAAVAQNGDYKYTNEAVNEQLINLVSQTQQGYSDKA 292

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAE-------EQGKSLSDISLGSFSKEYIPDVSL 325
              +    K   + F  +    K   +         EQ +  S          Y PD + 
Sbjct: 293 VNDLKATLKTNLDKFVKISNKAKAAGIKADPELTGVEQLRDYSQKYYNYLIDTYKPDEAA 352

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
             + F+  K  D   + +   GYVI        +    F+  KK  A  +  T   +   
Sbjct: 353 LQAKFNAKK--DSYNIPNSIGGYVI---GEEYQAGDGDFEAAKKQ-AQDIMKTTNKDNFA 406

Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
              K   +      +   +     +  +     +       G  V  I
Sbjct: 407 AKAKEFSKDPGSANNGGSLGETADLSQLVPEFANAVKSGKAGDIVGPI 454



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 118/359 (32%), Gaps = 38/359 (10%)

Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
           ++G ++K   D    + +  D         + + +  D       + R       N  ++
Sbjct: 285 QQGYSDKAVNDLKATLKTNLDKFVKISNKAKAAGIKADPELTGVEQLRDYSQKYYN--YL 342

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                P  A L   F   KD+Y  P      Y+                 +  EY+    
Sbjct: 343 IDTYKPDEAALQAKFNAKKDSYNIPNSIG-GYV-----------------IGEEYQAGDG 384

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
            + +   +  + ++    K+   A           + +++ G + +  SLG  +      
Sbjct: 385 DFEAA-KKQAQDIMKTTNKDNFAAKAK--------EFSKDPGSANNGGSLGETADLSQLV 435

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
              A+++ S  K GD    I   FGY I ++ + K +   +  +V   +        + +
Sbjct: 436 PEFANAVKS-GKAGDIVGPIKTQFGYHIIYIQS-KDANNENVAKVSHILITPTISEASKQ 493

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
           K+ +  + L+  +  G        ++      +   +   K VK   +  I   ++L+ +
Sbjct: 494 KIIKKVQDLKAEIESGKVTWSTVEKQDKYKFSVK--ERFKKMVKSDAIPGIGKNDELMNQ 551

Query: 443 VFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
           +F     L KD  +   D   Y  +     IP      E     V+ +       +E+ 
Sbjct: 552 IFA----LKKDGILERNDASGYYLITKTSEIPFTQATFENSKERVRLELAHEYADKELE 606


>gi|256084172|ref|XP_002578305.1| rotamase [Schistosoma mansoni]
 gi|238663674|emb|CAZ34543.1| rotamase, putative [Schistosoma mansoni]
          Length = 1421

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 271  TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
             V  ++   Q +  EA + LK GK+F Q+AE   +    S   LG  S+  +   +  D+
Sbjct: 1329 KVRHILCEKQSKCLEALEQLKNGKRFNQVAEIYSEDKARSGGDLGWMSRGSMVG-AFQDA 1387

Query: 329  IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
             F+L            P +   +GY I  V   +
Sbjct: 1388 AFNLPISTLENPKYTDPPVKTQYGYHIIMVEGRR 1421


>gi|319765026|ref|YP_004128963.1| sura domain protein [Alicycliphilus denitrificans BC]
 gi|317119587|gb|ADV02076.1| SurA domain protein [Alicycliphilus denitrificans BC]
          Length = 471

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/402 (10%), Positives = 112/402 (27%), Gaps = 66/402 (16%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +  +      ++    +S + G  +         L K++L+ L+      Q 
Sbjct: 70  VAVVNSEPITNNEVRQRAERVAQQLSGQ-GAAMPPHEV----LVKEVLERLILEKIQVQL 124

Query: 103 IEDIGLEADHGRVWGEIARSPLFHG-----------KDNKFSHDVFVSRLARE----GIN 147
            ++ G++ D   V                         +  S + F   L  +     + 
Sbjct: 125 AKEGGIKVDDYAVNQAEQNVAR-QNDVSVDEMHRRLAADGISKERFREELRNQLLALRVR 183

Query: 148 EKEYIDHYT-KMLSRTDVVGMFVGGMRPSNLLL----------------DQAKRFYFENR 190
           E++         L     +        P  + +                + A+R      
Sbjct: 184 ERDVESRVRVSDLEVDQYLQDQQKTAGPGKMEINLGHILVKVPEGASPEEVARRAARAQE 243

Query: 191 SVDYIVLNNRHVPAIADPSN--------AVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
            +D +         + + S+         +  +  ++Y + +     +     +      
Sbjct: 244 VLDKLRAGGDFGVLVQEYSDVPEGSGGGLLGLRPLDRYPELFVTAVQQAAVGSIVGPLRS 303

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK----- 292
                I    L+                    ++       ++++A E  + L++     
Sbjct: 304 PAGFHI----LKVVDRSQGGVPTMAVQSHARHILLRVGSGLSERQAAERLEDLRQRVLRG 359

Query: 293 GKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
              F  LA E    G +     LG             +++ +L + G+ +  +   FG  
Sbjct: 360 QADFATLAREYSQDGSAKDGGDLGWAGPGRYV-PEFQEALNAL-RPGEISQPVVSRFGVH 417

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +  +   + +     ++ +  + + +R  K  E      +  
Sbjct: 418 LIQLLERREAKLTQREQ-RDMVRDAVREKKLDEAFTTWIQEA 458



 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/393 (11%), Positives = 104/393 (26%), Gaps = 46/393 (11%)

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV---LNNRHVPAIA-- 206
                       + G          L+ +  +R   E   V       +           
Sbjct: 82  EVRQRAERVAQQLSGQGAAMPPHEVLVKEVLERLILEKIQVQLAKEGGIKVDDYAVNQAE 141

Query: 207 -------DPSNAVLTQWFEKY---KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
                  D S   + +        K+ +R     ++  +     + E ++ +S+ E+  +
Sbjct: 142 QNVARQNDVSVDEMHRRLAADGISKERFREELRNQLLALRVRERDVESRVRVSDLEV-DQ 200

Query: 257 YEKNKEKYFSPEIRTVE--QLVFPNQ------------KEADEAFQSLKKGKKFIQLAEE 302
           Y ++++K   P    +    ++                  A E    L+ G  F  L +E
Sbjct: 201 YLQDQQKTAGPGKMEINLGHILVKVPEGASPEEVARRAARAQEVLDKLRAGGDFGVLVQE 260

Query: 303 QGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     G    +       L  +    A  G     +    G+ I  V +      
Sbjct: 261 YSDVPEGSGGGLLGLRPLDRYPELFVTAVQQAAVGSIVGPLRSPAGFHILKVVDRSQGGV 320

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA----LGTSMDEISRREKIVSIDLPL 417
            +   V+    + +    +    ++  +RLE+              ++R           
Sbjct: 321 PTMA-VQSHARHILLRVGSGLSERQAAERLEDLRQRVLRGQADFATLAREYSQDG----S 375

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
               G          +P  ++ L  +        +     +       +Q+ E   A+  
Sbjct: 376 AKDGGDLGWAGPGRYVPEFQEALNAL-----RPGEISQPVVSRFGVHLIQLLERREAKLT 430

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
           + E+    V+   +  K  E  ++   +     
Sbjct: 431 QREQ-RDMVRDAVREKKLDEAFTTWIQEARARA 462


>gi|88857634|ref|ZP_01132277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           tunicata D2]
 gi|88820831|gb|EAR30643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           tunicata D2]
          Length = 274

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 76/195 (38%), Gaps = 17/195 (8%)

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
                +   K  +   E K+   +    ++  +++ ++  +++  Y +N+E+Y S + + 
Sbjct: 78  ESQTEYSDEKLAFELFEIKKDLLLNRYFNQYLEQV-VTETDMRNYYAQNQEQYQSQQAKV 136

Query: 272 VEQLVFPNQKE-----------ADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFS 316
              L+  N  +           A EA+  +  G  F  +A    E++  +     LG   
Sbjct: 137 SHILLRVNPADDETTRQAKYSKAVEAYSKINTGSDFSVVAQSLSEDRVSAKKGGQLGWIK 196

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
              I   + +D++F+  K G  +  I   FGY +  +     +   SF+ V+ +I   +R
Sbjct: 197 AGAI-GATFSDTVFNQLKAGQVSEPILTDFGYHVILLEQEPKTVKRSFESVQGNIKRSLR 255

Query: 377 ITKASEKVKEDYKRL 391
                 ++      +
Sbjct: 256 KAAKDAELARLQSTV 270


>gi|126443707|ref|YP_001062622.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia pseudomallei 668]
 gi|126223198|gb|ABN86703.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 668]
          Length = 265

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 18/172 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQS-LKKGKKF 296
           E + D  +  Y  +  ++   +I     ++F           ++EA+      L + + F
Sbjct: 89  EPTRDACERYYLNHAARFRRRDIVYASHILFAVTDATPLAPLRREAEATLARVLAEPQTF 148

Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
              A E      +    SLG   +          ++F     G    +++  FG+ I  +
Sbjct: 149 EARARELSNCPSAQVGGSLGQLLRGDSV-PEFDAAVFDTTDSGVLPRLVNTRFGFHIVRI 207

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
               P   V F  V  +IA  +    A     +  ++    LA G  ++ ++
Sbjct: 208 ERRVPGDPVPFDAVAAEIAAFL----AERVHHKAIQQYVTILASGARIEGVA 255


>gi|56461330|ref|YP_156611.1| parvulin-like peptidyl-prolyl isomerase [Idiomarina loihiensis
           L2TR]
 gi|81678272|sp|Q5QVN9|SURA_IDILO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|56180340|gb|AAV83062.1| Periplasmic parvulin-like peptidyl-prolyl isomerase (two homologous
           domains) [Idiomarina loihiensis L2TR]
          Length = 432

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/400 (11%), Positives = 119/400 (29%), Gaps = 63/400 (15%)

Query: 60  WKQELGMISQKI--GFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            + ++  + Q++  G   NS  A S   L+ + ++ L+      Q    +G+E D  ++ 
Sbjct: 43  LQSQIDQLIQQVKNGQNFNSSNAPSDEVLETQAIERLILQEIQLQMANRMGIEIDDNQLE 102

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDVVGMFVGGMRPS 175
             I               +     +   G++   Y ++    L  +          +  +
Sbjct: 103 QAINEIANNQDLTTAELREN----MVSSGMSWAAYRENIRNELVIQQVQRAAVQQRVSIT 158

Query: 176 NLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWFE---------KYKDNYR 225
              ++   +    N+ V     L    + A ++ S A L +  E             ++ 
Sbjct: 159 PQEINNLVKLIESNQEVQTEYRLAQILISADSNSSQAELEKAKERANTVLNLLDKGSDFA 218

Query: 226 APEYKR-----------ISYILFDVHEKEKKIEISNDE---------------LQAEYEK 259
               +            + ++  +         +                   +    +K
Sbjct: 219 DLAVRSSSGSAALDGGDLGWMTVNGMPTLFAEAVDGKSVGDVVGPIRSGIGFHILKVQDK 278

Query: 260 NKEKYFSPEIRTVEQLVFP-----NQKEADEAF----QSLKKGKK-FIQLAEEQGKSLSD 309
             E+    +      ++       +  +A E      + +  G+K F +LA E       
Sbjct: 279 RGEQTVEVQEVKARHILIKPSVILSDNKAKEMLNKYREQIASGEKTFAELAREHSADPGS 338

Query: 310 ISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
            S G    +++           + S+ +    +      FG+ I  V+  +     +   
Sbjct: 339 ASRGGDLGWARPNKYAPEFKQKVESIEQD-TISEPFSTQFGWHIVEVTGRR-----TLDA 392

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
            +++   +      S K +E+    ++ +     +  ++ 
Sbjct: 393 TEENKQERAYQMLFSRKFREELDNWQQEIRDQAFIRRVAE 432



 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 8/164 (4%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---EEQGK 305
           SN E+Q EY    +   S +  + +  +   ++ A+     L KG  F  LA        
Sbjct: 171 SNQEVQTEYRL-AQILISADSNSSQAELEKAKERANTVLNLLDKGSDFADLAVRSSSGSA 229

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           +L    LG  +   +P    A+++      GD    I    G+ I  V + +   TV  Q
Sbjct: 230 ALDGGDLGWMTVNGMP-TLFAEAVDG-KSVGDVVGPIRSGIGFHILKVQDKRGEQTVEVQ 287

Query: 366 EVKKD-IANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRR 407
           EVK   I  +  +  +  K KE   +  E +A G  +  E++R 
Sbjct: 288 EVKARHILIKPSVILSDNKAKEMLNKYREQIASGEKTFAELARE 331


>gi|313675959|ref|YP_004053955.1| ppic-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
           DSM 4126]
 gi|312942657|gb|ADR21847.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
           DSM 4126]
          Length = 449

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/397 (13%), Positives = 127/397 (31%), Gaps = 52/397 (13%)

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           +  RL+R G    E      + L    +  M       S  +L+       ENR      
Sbjct: 54  YKDRLSRGGQQSAEGRCEVLESLIVNKL--MLAKAEIDSVTVLESQVDAQLENR------ 105

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE---KEKKIEISNDEL 253
                +      S   + +++ K  D ++      +   +          + +E++  ++
Sbjct: 106 ---MKMMVQQIGSEEKIEEYYGKSLDEFKVEIRDDVKEQMIIGEMQRTITQDLEVTPKQV 162

Query: 254 QAEYEKNKEKYFSP---EIRTVEQLVFP---NQKEADEAFQSLK-------KGKKFIQLA 300
           Q  ++ N  K   P       V Q+V     +++  +     L        +G+ F  +A
Sbjct: 163 QNFFD-NIPKDSLPFYSTQVQVGQIVKKPTMSREAKENIKARLNGLRERILEGENFEDIA 221

Query: 301 ----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
               +E G   S  ++G F +  +       +   L K G+ +  +   FG+ I  + + 
Sbjct: 222 RLYSQEPGAKQSGGNIGYFERGQLA-PEYEATALRL-KPGEISKPVETDFGFHIIELLDR 279

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIVSIDL 415
           + +    F      I  +    +  EK  +    +    +    + ++ +          
Sbjct: 280 RGNE---FNTRHILILPKFTK-RDMEKSVQFLDSIRNLIIKDSITFEKAAAEYSDDMNTS 335

Query: 416 PLVDFA-GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI----KE 470
               +    +  G +++       + F +   +        +         V+I     +
Sbjct: 336 SSGGYFIESEAGGTKISVDELDPNIFFTIDTMEVGSITKPIIFRQQDRSEAVRIIYFKDK 395

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
             P R         D++KD++ +K A     K+ +L 
Sbjct: 396 IRPHR--------ADIRKDYQKIKQAALNKKKSEKLA 424


>gi|77918484|ref|YP_356299.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Pelobacter carbinolicus DSM 2380]
 gi|77544567|gb|ABA88129.1| PPIase domain protein [Pelobacter carbinolicus DSM 2380]
          Length = 291

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 58/167 (34%), Gaps = 2/167 (1%)

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +  +   +  +  K   + +E++A ++ + E Y +P +  V  +   ++ E +     L 
Sbjct: 107 LKVMQDRLVPQIDKARFTEEEVKAYFDAHPESYVTPALYDVRIIKAADKAELESLVAELG 166

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS--IFSLAKKGDFTPVIHGSFGYV 349
            G  F +         +    G             D   I    + G  +        + 
Sbjct: 167 GGLTFEEAVRTHSTDAATREKGGAVGRRPLKRFRPDWRGIVEKLEPGKVSEPTAIGDSWY 226

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           +  +       +  +++ K  + N +  T+  E  +  Y++L++  +
Sbjct: 227 LLKLEGKTEPVSHVYEDKKAYVRNDLLYTRYREAWQGTYEKLKKEFS 273


>gi|257125090|ref|YP_003163204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptotrichia
           buccalis C-1013-b]
 gi|257049029|gb|ACV38213.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptotrichia
           buccalis C-1013-b]
          Length = 608

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 62/470 (13%), Positives = 153/470 (32%), Gaps = 61/470 (12%)

Query: 48  RQKVPFSSFINSWKQELGMISQKI-GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
             K+       ++  E    +Q       +  + +      +  + ++  + L +  E  
Sbjct: 182 NDKITEEEIKKAY--ERNKYTQSFANQDFDDVKDQIKETMTQDKNIMILNSYLAKAKEKT 239

Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
            +               +F  K+ +  +    + +A+ G         YT       ++ 
Sbjct: 240 KI---------------VFKDKNFENMYTKVKAVVAQNG------EYKYTNEAVNEQIIN 278

Query: 167 MFVGGMRP-SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL---------TQW 216
                 +  S+ L+++ K    +N    ++ ++ +   A       ++          ++
Sbjct: 279 SVSQTQQGYSDKLVNELKTTLKKNLD-KFVKISEKAKAAGIKADPDLIGVDQLRDYSQKY 337

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +    D+Y+  +    +           +  I    +  EY+  +  +            
Sbjct: 338 YNYLIDSYKPDDATLQARFNAKRDSYNTQNSIGGYVIGEEYQAGESDFEG---------- 387

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSL 332
              +K+ADE  ++  K   F   A+E  K      +  SLG  +         A+++ + 
Sbjct: 388 --AKKQADEIMKTTTK-DNFAAKAKEFSKDPESAKNGGSLGETADLSQLVPEFANAVKN- 443

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            K GD    I   FGY I ++ +  P    +  +V   +        + +KV +  + L+
Sbjct: 444 GKAGDIVGPIKTQFGYHIIYIQSKDPKND-NVAKVSHILITPTISEASKQKVIKKVQNLK 502

Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
             +       + + ++   +  +   +   K VK   +  I   ++L+ ++F     L  
Sbjct: 503 AEIESKKVTWDNAEKQDKYNFSVK--ERFKKLVKTDAIPGIGKNDELMNQIFA----LKI 556

Query: 453 DHTVALPDG-SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
           D  +   D   Y  +     IP      E     V+ +       +++ S
Sbjct: 557 DGILERNDATGYYLIAKTSEIPFAQATFENSKERVRLELAHEYADKQLDS 606



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/446 (14%), Positives = 137/446 (30%), Gaps = 51/446 (11%)

Query: 5   IRKASRTW--VAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFIN 58
            R   +     + I + +  +  LI G+    ++   +++    + +V   K+    F  
Sbjct: 3   FRSHKKGIQLASAIMMGIFGIGMLISGILFLKNNVFGALNHREVIATVNGIKIYRDDFER 62

Query: 59  S---WKQELGMISQKIGFVVNSERARSVGLD--------KKILDNLVSGATLDQFIEDIG 107
                K EL  I+Q+    +      S  +         + +L  +++   L    +++G
Sbjct: 63  ESYSLKNELNEITQQKIQQLAQVGTNSGNIKSVPDDLVNEYVLQLIINKEILLSSAKNLG 122

Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
           ++     V  E         K +K     F   L   G N   +            +   
Sbjct: 123 IKVSGSDVNKEFENY----RKQSKLGKKEFGEYLRSVGYNVSSFKQTIKDQKIIEKMREK 178

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
                + +   +   K +     +  +   +   V      +               +A 
Sbjct: 179 IFSNDKITEEEIK--KAYERNKYTQSFANQDFDDVKDQIKETMTQDKNIMILNSYLAKAK 236

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-NQKEADEA 286
           E  +I +   +      K++    +   EY+   E      I +V Q     + K  +E 
Sbjct: 237 EKTKIVFKDKNFENMYTKVKAVVAQ-NGEYKYTNEAVNEQIINSVSQTQQGYSDKLVNEL 295

Query: 287 FQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYI----------------PDVSLADSI 329
             +LKK    F++++E+   +           + +                PD +   + 
Sbjct: 296 KTTLKKNLDKFVKISEKAKAAGIKADPDLIGVDQLRDYSQKYYNYLIDSYKPDDATLQAR 355

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           F+  +  D     +   GYVI        +    F+  KK  A+++  T   +      K
Sbjct: 356 FNAKR--DSYNTQNSIGGYVI---GEEYQAGESDFEGAKKQ-ADEIMKTTTKDNFAAKAK 409

Query: 390 RLE---EFLALGTSMDEISRREKIVS 412
                 E    G S+ E +   ++V 
Sbjct: 410 EFSKDPESAKNGGSLGETADLSQLVP 435


>gi|262189698|ref|ZP_06048066.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae CT
           5369-93]
 gi|262034418|gb|EEY52790.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae CT
           5369-93]
          Length = 365

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 114/335 (34%), Gaps = 85/335 (25%)

Query: 84  GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
            L +++L+ L+      Q  + IG++ D  R+   I        K+N+ + +  ++ +A+
Sbjct: 1   MLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQ 56

Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
           EG+   E+         R  V          + L+  +      E  ++  ++       
Sbjct: 57  EGLTYPEF---------REQVRKEMAASDARNALVRRRINILPAEVDTLAELL------- 100

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
             A  ++A +                 +IS+I   V + + K                  
Sbjct: 101 --AQETDATVQ---------------YKISHIQLRVDDGQDKS----------------- 126

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYI 320
                           +  A++    L+ G  F Q+A    K   +L     G   KE +
Sbjct: 127 --------------AAETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEM 172

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIAN 373
           P    AD I  +  KG          G+ I  + ++K   TV+  EV       K  I  
Sbjct: 173 P-TIFADQI-KMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII- 229

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +    A +++ E  +R++       +  E++++ 
Sbjct: 230 -LSDEGAQKQLNEFVQRIKN---GEVTFAELAQQY 260


>gi|307298526|ref|ZP_07578329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915691|gb|EFN46075.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 733

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 78/241 (32%), Gaps = 28/241 (11%)

Query: 141 LAREGINEKEYID--------HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN-RS 191
           L  +G N   Y +             L ++ +    +      N +L  A++   E  R 
Sbjct: 95  LRSQGYNLDPYFETENYPSEMGIRYDLFKSLIDQKTLLFYATENGVLPTAEQVDAETNRI 154

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           VD  V +     AI          +     D +       +   +   +  +K I    +
Sbjct: 155 VDEYVADEETKSAII---------YQYGSVDAFSELVRDYVVTQMLATNVTQKAIPDMEE 205

Query: 252 ELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQG----K 305
             +    +N E      E      ++  ++  A E    +  G+  F   A +       
Sbjct: 206 RFENYVNENMEDLKINYEKVDANHILVSDEASAVEIKSMIDSGEISFTDAATQFSIDTDT 265

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           +++  +LG F +  +      D+ F  A  G     +   FGY +  V++       +F+
Sbjct: 266 AINGGALGEFGRGQMV-QEFEDASFD-ATPGLVIGPVESQFGYHLIRVNSKT--TFDTFE 321

Query: 366 E 366
           E
Sbjct: 322 E 322


>gi|302333506|gb|ADL23699.1| peptidylprolyl isomerase, PrsA [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 320

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 47/198 (23%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +KYK+N R   Y +             KI+IS+ E++             + +    ++ 
Sbjct: 110 DKYKENLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 149

Query: 278 P-----------NQKEADEAFQSL-----KKGKKFIQLAEEQ----GKSLSDISLGSFSK 317
                       + KEA +  + +     K   KF ++A+++    G +  D  LG   K
Sbjct: 150 KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKNPSKFGEIAKKESMDTGSAKKDGELGYVLK 209

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
               D     ++F L K G+ + V+  SFGY I             F   K+ +  ++  
Sbjct: 210 GQT-DKDFEKALFKL-KDGEVSDVVKSSFGYHIIK-----ADKPTDFNSEKQSLKEKLVD 262

Query: 378 TKASEKVKEDYKRLEEFL 395
            K  +  K      ++ L
Sbjct: 263 QKVQKNPKLLTDAYKDLL 280


>gi|303236822|ref|ZP_07323401.1| PPIC-type PPIASE domain protein [Prevotella disiens FB035-09AN]
 gi|302482990|gb|EFL46006.1| PPIC-type PPIASE domain protein [Prevotella disiens FB035-09AN]
          Length = 477

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/380 (11%), Positives = 106/380 (27%), Gaps = 54/380 (14%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS----VD 193
            + L    + E E      + ++    +       +          +   +         
Sbjct: 102 QAALDSINVTEAEITQGVEQQINAWIAIPQIGSKEKLEEYQHKSIAQIRQDLHDDFKNRQ 161

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--RAPEYKRISYILFDVHEKEKKIEISND 251
            +      +      S A + ++F+K   +     P    +  I      +  +IE   +
Sbjct: 162 LVQRMQEKLVGDVKVSPAEVREYFKKLPVDSIPMIPTTVEVQLITQTPRIEPTEIERIKN 221

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLA----EEQGKS 306
           +L+                                   + KG+  F  LA    E+ G +
Sbjct: 222 QLRDY------------------------------TDRVVKGETSFETLARLYSEDPGSA 251

Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
                LG   +  + D + A + F+L      + V+   FGY I  + + +         
Sbjct: 252 RQGGELGFMGRGML-DPTFAAAAFNLTDPKKVSKVVESEFGYHIIQLIDRRGDKL----N 306

Query: 367 VKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEIS---RREKIVSIDLPLVDFAG 422
            +  +        A          +  +  A   + DE +     +K    +  L+    
Sbjct: 307 CRHILLKPKVSADALNAATNRLDSIANDIKAGKFTFDEATMIISDDKETKNNHGLMTNVQ 366

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
              +    A      ++  +V             ++ DG    V +   + +R    +E 
Sbjct: 367 GQARTSRFAMRELPSEIARKVENM-KVGEVSEPFSMIDGRGKLVVVIVKLKSRI---DEH 422

Query: 483 LTDVKKDWKTVKTAEEVSSK 502
              + +D + +K    +  +
Sbjct: 423 RATITEDLQAMKDIVALKKR 442


>gi|117619758|ref|YP_856089.1| peptidyl-prolyl cis-trans isomerase C [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561165|gb|ABK38113.1| peptidyl-prolyl cis-trans isomerase C [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 92

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADS 328
            + ++   +KE  E  + + KG  F Q+A+      S      LG FSK  +   +  D+
Sbjct: 6   AQHILVKTEKECLEIKEKIAKGADFGQMAKRFSTCASSKRFGDLGEFSKGDMVK-AFDDA 64

Query: 329 IFSLAKKGD---FTPVIHGSFGYVIAHV 353
           +F    KG+       +   FG+ +  V
Sbjct: 65  VF----KGELLTVLGPVRTKFGFHLIKV 88


>gi|49484083|ref|YP_041307.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425953|ref|ZP_05602377.1| foldase prsA [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428618|ref|ZP_05605016.1| foldase prsA [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431255|ref|ZP_05607632.1| foldase prsA [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433935|ref|ZP_05610293.1| foldase prsA [Staphylococcus aureus subsp. aureus E1410]
 gi|257436851|ref|ZP_05612895.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282904416|ref|ZP_06312304.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus C160]
 gi|282906239|ref|ZP_06314094.1| foldase prsA [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909157|ref|ZP_06316975.1| foldase prsA [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911464|ref|ZP_06319266.1| foldase prsA [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914636|ref|ZP_06322422.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus M899]
 gi|282919602|ref|ZP_06327337.1| foldase prsA [Staphylococcus aureus subsp. aureus C427]
 gi|282924982|ref|ZP_06332648.1| foldase prsA [Staphylococcus aureus subsp. aureus C101]
 gi|283958594|ref|ZP_06376045.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503708|ref|ZP_06667555.1| foldase prsA [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510729|ref|ZP_06669434.1| foldase prsA [Staphylococcus aureus subsp. aureus M809]
 gi|293537271|ref|ZP_06671951.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus M1015]
 gi|295428419|ref|ZP_06821048.1| foldase prsA [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590614|ref|ZP_06949252.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|56749225|sp|Q6GFL5|PRSA_STAAR RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|49242212|emb|CAG40919.1| putative peptidyl-prolyl cis-isomerase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257271647|gb|EEV03793.1| foldase prsA [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275459|gb|EEV06946.1| foldase prsA [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278203|gb|EEV08851.1| foldase prsA [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282028|gb|EEV12165.1| foldase prsA [Staphylococcus aureus subsp. aureus E1410]
 gi|257284202|gb|EEV14325.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313348|gb|EFB43744.1| foldase prsA [Staphylococcus aureus subsp. aureus C101]
 gi|282317412|gb|EFB47786.1| foldase prsA [Staphylococcus aureus subsp. aureus C427]
 gi|282321817|gb|EFB52142.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus M899]
 gi|282325159|gb|EFB55469.1| foldase prsA [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327421|gb|EFB57716.1| foldase prsA [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331531|gb|EFB61045.1| foldase prsA [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596034|gb|EFC00998.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus C160]
 gi|283790743|gb|EFC29560.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920116|gb|EFD97184.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus M1015]
 gi|291095374|gb|EFE25639.1| foldase prsA [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466620|gb|EFF09141.1| foldase prsA [Staphylococcus aureus subsp. aureus M809]
 gi|295127819|gb|EFG57456.1| foldase prsA [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575500|gb|EFH94216.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312437694|gb|ADQ76765.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315195752|gb|EFU26139.1| putative peptidyl-prolyl cis-isomerase [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 320

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 47/198 (23%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +KYK+N R   Y +             KI+IS+ E++             + +    ++ 
Sbjct: 110 DKYKENLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 149

Query: 278 P-----------NQKEADEAFQSLKK-----GKKFIQLAEEQ----GKSLSDISLGSFSK 317
                       + KEA +  + ++K       KF ++A+++    G +  D  LG   K
Sbjct: 150 KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLK 209

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
               D     ++F L K G+ + V+  SFGY I             F   K+ +  ++  
Sbjct: 210 GQT-DKDFEKALFKL-KDGEVSDVVKSSFGYHIIK-----ADKPTDFNSEKQSLKEKLVD 262

Query: 378 TKASEKVKEDYKRLEEFL 395
            K  +  K      ++ L
Sbjct: 263 QKVQKNPKLLTDAYKDLL 280


>gi|39997591|ref|NP_953542.1| hypothetical protein GSU2496 [Geobacter sulfurreducens PCA]
 gi|39984483|gb|AAR35869.1| hypothetical protein GSU2496 [Geobacter sulfurreducens PCA]
          Length = 571

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 74/172 (43%), Gaps = 7/172 (4%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            + + +  F        ++++ DEL+A YE +K +Y  P +  ++ + F +Q  A  A +
Sbjct: 392 QESVIFGHFVEKVIRPDVKVTEDELKAYYEAHKSEYSYPIMVVLDGIAFNDQNAAQSAAE 451

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP-----DVSLADSIFSLAKKGDFTPVIH 343
            L++G  F    E     +   + G    E +P          + + + A+ G++  V  
Sbjct: 452 KLRQGMDFKWFKENAEGHVDAKAAGVLQFEDVPVTLKTLPEGLNKVITGAQTGEY-RVYS 510

Query: 344 GSFGY-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
              G+  +  V N+ P    SF EV+  I   ++  + ++ V E   +L + 
Sbjct: 511 DPNGFTYVILVRNVIPEQVQSFPEVEATIRKNVQSEQLNKLVVEWADKLRKA 562



 Score = 43.8 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 72/523 (13%), Positives = 156/523 (29%), Gaps = 82/523 (15%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V +V  + +  +    S +     +++  G                IL+ +++   + Q 
Sbjct: 60  VATVNDEPITVNDLNASLETVHEGMTE--GKQAPRRNFTD------ILNRIITSKLIIQE 111

Query: 103 IEDIGLEADH------GRVWGEIARSPLFHG------KDNKFSHDVFVSR-----LAREG 145
             +IGL+              ++ R  +          D K     +         +   
Sbjct: 112 GRNIGLDQQEQPKEMIDTFSRKLLRELVLKDHVKDIRPDPKEVEKRYGQLNVEWTFSTLT 171

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
              +E      K L +       V   ++       Q ++  +E+   D + + +   P 
Sbjct: 172 FKNEEDAKKARKALDKGTSFDALVAEEVKEKRAEAKQNEKLKYEHIHPDIVKIIDSLKPG 231

Query: 205 IADP-------------------SNAVLTQWFEK---YKDNYRAPEYKRISYILFDVHEK 242
              P                    +  L    EK       ++A E  R   I     + 
Sbjct: 232 AVGPVIDMQKGAMLFRLDAVKHSDDPKLKDRAEKETLTAARFKALEKFRTELIEKYFKQD 291

Query: 243 EKKIEISNDELQAEYEKNKEKYFS--PEIRTVEQLV----FPNQKEADEAFQSLKKGKKF 296
           +K I+  +      +EK+K  +     + R +  +           A+        G   
Sbjct: 292 KKLIKSLD------FEKDKAGFLKFLEDKRPLATIKGEKPVTVADLAEAIRMKFYHGVDM 345

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK--GDFTPVIHGS-FGYVIAHV 353
             + +++     D  L         +    D  F   K+     T       FG+ +  V
Sbjct: 346 A-IDQKKVNKAKDSLLFEILATRAIEKEGRDKGFDKKKEYLDKVTDYQESVIFGHFVEKV 404

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI-VS 412
             I+P   V+  E+K              +       + + +A        S  EK+   
Sbjct: 405 --IRPDVKVTEDELKAYYEAH------KSEYSYPIMVVLDGIAFNDQNAAQSAAEKLRQG 456

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA---------LPDGSY 463
           +D        +     + A +   E +   +    + L+K  T A          P+G  
Sbjct: 457 MDFKWFKENAEGHVDAKAAGVLQFEDVPVTLKTLPEGLNKVITGAQTGEYRVYSDPNGFT 516

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
             + ++  IP + +   EV   ++K+ ++ +  + V   A++L
Sbjct: 517 YVILVRNVIPEQVQSFPEVEATIRKNVQSEQLNKLVVEWADKL 559


>gi|307730260|ref|YP_003907484.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
 gi|307584795|gb|ADN58193.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
          Length = 304

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 69/186 (37%), Gaps = 16/186 (8%)

Query: 214 TQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
            Q +E       A E  +  +     + ++ K   +++ +++A+Y+         E +  
Sbjct: 107 KQHYESRPQVVAAVEQAKSAAMTAAYLRDQVKPAPVTDADVKAKYDAIVATLGEFEYKPS 166

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDV------ 323
             +   +   A      LKKG  F QLA++      +    +L   S             
Sbjct: 167 A-IAVKDADTAQTVLTQLKKGTDFAQLAKQYSQGPGAAQGGALNWISFRTPIQPGNTQNW 225

Query: 324 --SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM---RIT 378
              LA+++  L + G  +  +     + I  V   +P+    + ++K  +  Q+    + 
Sbjct: 226 PQPLAEALVKLPQGGVSSAPVQVGDAFWILRVDEKRPTQVPQYDQIKDTLRKQLEQVALQ 285

Query: 379 KASEKV 384
           KA+ +V
Sbjct: 286 KATAQV 291


>gi|326315452|ref|YP_004233124.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372288|gb|ADX44557.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 303

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 68/218 (31%), Gaps = 26/218 (11%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +   D+    E    +             +   +  +  YE +  +Y   E   +  +++
Sbjct: 96  DAPADDGTTSEAATQAIEALLEQAIAVP-DPLEESCRRHYEAHAARYRDGERVHLRHILY 154

Query: 278 PN---------QKEADEAFQSLK----KGKKFIQLAEEQG---KSLSDISLGSFSKEYIP 321
                      ++ A+     L+     G+ F + A E            LG  ++    
Sbjct: 155 AVTPGVDVQRLRERAEATLLQLRCADDGGEAFARAARESSNCPTGAEGGDLGWLARGDCA 214

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
               A  +F   + G    ++H  FG  +  V          + EV++ +A  +R     
Sbjct: 215 -PEFAREVFGAQEVGVLPRLVHSRFGLHVVEVVARDAGRQRGYGEVREAVALALRQQ--- 270

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
                  ++  + LA   ++  +     +   D PLV 
Sbjct: 271 -AWVNALRQYLQVLAGEAALQGV----DLEGADTPLVQ 303


>gi|313682198|ref|YP_004059936.1| ppic-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155058|gb|ADR33736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 92

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++   + E +E  + +++G  F ++A +  +  S      LG FS   +       
Sbjct: 5   TARHILVSTEAECNELKKQIEEGASFAEIAADNSQCPSGRKGGDLGRFSPGQMVK-EFDT 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           ++F+    G     I   FGY +  V+  
Sbjct: 64  AVFN-GDVGVLYGPIKTQFGYHLLEVTAR 91


>gi|229552580|ref|ZP_04441305.1| peptidylprolyl isomerase [Lactobacillus rhamnosus LMS2-1]
 gi|258508775|ref|YP_003171526.1| peptidylprolyl cis-trans isomerase PrsA1 [Lactobacillus rhamnosus
           GG]
 gi|258539953|ref|YP_003174452.1| peptidylprolyl cis-trans isomerase PrsA1 [Lactobacillus rhamnosus
           Lc 705]
 gi|229314132|gb|EEN80105.1| peptidylprolyl isomerase [Lactobacillus rhamnosus LMS2-1]
 gi|257148702|emb|CAR87675.1| Peptidylprolyl cis-trans isomerase PrsA1 [Lactobacillus rhamnosus
           GG]
 gi|257151629|emb|CAR90601.1| Peptidylprolyl cis-trans isomerase PrsA1 [Lactobacillus rhamnosus
           Lc 705]
 gi|259650081|dbj|BAI42243.1| peptidylprolyl isomerase [Lactobacillus rhamnosus GG]
          Length = 300

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 32/235 (13%)

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVD-YIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           V    G     +   D  K+      ++   IVL           S+  +   F K K  
Sbjct: 25  VANMKGAKVTKDEYYDAMKKTTTGQATLRNMIVLKALEQQYPNKVSDKKVNSQFNKLKKQ 84

Query: 224 Y-----RAPEY---------KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           Y        E           +I   L+     +   + +  +++++++K + K      
Sbjct: 85  YGSSFDSTLEQNGYTESSFKDQIRTTLYSEVALKDMKKPTTKQIESQWKKYQPKI----- 139

Query: 270 RTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKSLSDISLG-----SFSKEYIP 321
             V+ ++   + EA +     +K    K F  LA++        + G       + +   
Sbjct: 140 -QVQHILVKTEDEAKQIISDYQKDPTEKNFESLAKKNSIDTGTKNKGGKLAAFDNTDTSL 198

Query: 322 DVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           D +   + F L K GD T   +   +GY +  V +I  +   + +E KKD+  Q+
Sbjct: 199 DSTFKSAAFKLKKAGDITTTPVKTQYGYHVIRVISI--AKKGTMKEHKKDLEKQI 251


>gi|189426077|ref|YP_001953254.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
 gi|189422336|gb|ACD96734.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
          Length = 242

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 11/127 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++   +    +    ++ G  F  +A+ +    S      LG+F    +       
Sbjct: 4   TARHILVDTEARCLQLKADIEAGADFADVAQRESSCPSRQKGGDLGTFGPGQMV-PEFDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI------KPSFTVSFQEVKKDIANQMRITKAS 381
            +FS  +       +   FGY +  V+N       +        +    +   M    A 
Sbjct: 63  VVFS-GELNKVLGPVKTQFGYHLIEVTNRWEQPATQAGGESDLDQALVALRQDMSDATAQ 121

Query: 382 EKVKEDY 388
            K  + +
Sbjct: 122 SKFYDAF 128


>gi|148547507|ref|YP_001267609.1| SurA domain-containing protein [Pseudomonas putida F1]
 gi|148511565|gb|ABQ78425.1| SurA N-terminal domain [Pseudomonas putida F1]
          Length = 213

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 47/147 (31%), Gaps = 7/147 (4%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
              V   ++        + + L    + +  + N    +   L  + LD L+    L Q 
Sbjct: 22  AARVNGVEIGLMRLERYFSEYLDAQGRAVTSIRNPGLYKR--LRDQALDELIDKELLWQE 79

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            +  G+      V  +I       G     S  +F  RLA  G +  +Y ++    ++  
Sbjct: 80  AQRQGIAVSDEHVSAQIGEIEAAFG-----SPALFERRLAEAGFDRAQYTEYTRHEMAAQ 134

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFEN 189
            V  +      PS   ++       + 
Sbjct: 135 QVYALLSAVDAPSQGEVEAFYDANQQR 161


>gi|121608769|ref|YP_996576.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
 gi|121553409|gb|ABM57558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
          Length = 261

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 57/145 (39%), Gaps = 4/145 (2%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           +    I     +  K   +++ E QAEY+K        E +    ++   + +A     +
Sbjct: 95  REAILINALFADFRKANPVTDAETQAEYDKFVAANNGKEYK-ASHILVDKEADAKAIIAA 153

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSF 346
           +KKG KF  +A++Q K     + G       P        +++  L +       +   F
Sbjct: 154 IKKGAKFEDIAKKQSKDPGSGAKGGDLGWASPASYVSEFTEALIKLDQGKMTDAPVKSQF 213

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDI 371
           G+ +  + +++P      ++VK  +
Sbjct: 214 GWHVIRLDDMRPIQLPKLEDVKPQV 238


>gi|325851850|ref|ZP_08171015.1| PPIC-type PPIASE domain protein [Prevotella denticola CRIS 18C-A]
 gi|327312553|ref|YP_004327990.1| PPIC-type PPIASE domain-containing protein [Prevotella denticola
           F0289]
 gi|325484692|gb|EGC87605.1| PPIC-type PPIASE domain protein [Prevotella denticola CRIS 18C-A]
 gi|326946030|gb|AEA21915.1| PPIC-type PPIASE domain protein [Prevotella denticola F0289]
          Length = 480

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 100/294 (34%), Gaps = 29/294 (9%)

Query: 240 HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEA----------F 287
            +    +++S  E++  + K         P    VE L    + E +E            
Sbjct: 171 EKLVSDVKVSPAEVREYFRKLPVDSIPMIPTTVEVEILTQTPKVEPEEINRIKNQLRDYT 230

Query: 288 QSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             + KG+  F  LA    E+ G +     LG   +  + D + A + F+L      + V+
Sbjct: 231 DRITKGETSFATLARLYSEDPGSARQGGELGYMGRGML-DPAFAAAAFNLTDPKKVSKVV 289

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSM 401
              FGY I  + + +          +  +        + +  KE    + ++      + 
Sbjct: 290 ESEFGYHIIQLIDRRGDKV----NCRHILLKPNVSMASIDAAKERLDSIGKDIRNGKFTF 345

Query: 402 DEIS---RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG-KDDPLSKDHTVA 457
           ++ +     +K    +  L+  + ++ +           ++   V   K D +S+   + 
Sbjct: 346 EDATAYLSDDKDTKNNHGLMVNSSENARTSRFKMKDLPTEVARVVDTMKVDEVSQPFQMV 405

Query: 458 LPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
            P G  +   V++KE  P     + E    ++      +  + +     + V E
Sbjct: 406 NPRGKVVCAIVKLKERTPEHRATITEDFQAMRDIVTAQRRKDILHDWVVKKVKE 459


>gi|120609364|ref|YP_969042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
 gi|120587828|gb|ABM31268.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
          Length = 303

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 62/195 (31%), Gaps = 19/195 (9%)

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----- 279
              E    +             + S D  +  YE +  +Y   E   +  +++       
Sbjct: 103 TTSEAATQAIEALLEQALAVP-DPSEDACRRHYEAHTARYRDGERVHLRHVLYAVTPGVD 161

Query: 280 ----QKEADEAFQSLK----KGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
               ++ A+     L+     G+ F + A +            LG  ++        A  
Sbjct: 162 VQRLRERAEAELLQLRCAHDGGEAFARAARQWSNCPTGAEGGDLGWLARGDCA-PEFARE 220

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           +F   + G    ++H  FG  +  V          + EV++ +A  +R       +++  
Sbjct: 221 VFGAQEVGVLPRLVHSRFGLHVVEVVARDAGRQRGYGEVREAVALALRQQSWVNALRQYL 280

Query: 389 KRLE-EFLALGTSMD 402
           + L  E    G  +D
Sbjct: 281 QVLAGEAALQGVDLD 295


>gi|146339260|ref|YP_001204308.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
 gi|146192066|emb|CAL76071.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
          Length = 341

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 22/211 (10%)

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD---NYRAPEYKRISYILFDVHEKEKKI 246
           R    +    R + A        L + +++               ++        +    
Sbjct: 96  RDPALLSQTVRAILANRLVLKEALAKKWDQQPAVVAQLARARESILTEGYLQSVTQPPDS 155

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSLKK-G 293
             S  +++A YE N   +  P    + Q++     +A            ++  + LK+ G
Sbjct: 156 YPSEADIKAAYEVNMSAFLVPRRFRIAQILVALANDADKAAEDAAKKKLEDVVRKLKQPG 215

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
             F  LA     E   +  D  +G   +  +    +   +  LAK G  T  I    G+ 
Sbjct: 216 TDFAALARASSDETATAEKDGEIGWVPEPNLRG-EIRSQVAGLAKGG-VTDPIRLDDGWH 273

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           +  + +   S T    EVK  +  ++R  +A
Sbjct: 274 VVKLLDTDASTTRPLAEVKDVLIQRLRAERA 304



 Score = 38.0 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 8/116 (6%)

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKE-------VAAIPYKEQLLFRVFGKDDPLSKD 453
           ++++ R+ K    D   +  A  D                P     +             
Sbjct: 204 LEDVVRKLKQPGTDFAALARASSDETATAEKDGEIGWVPEPNLRGEIRSQVAGLAKGGVT 263

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
             + L DG +  V++ ++  +  R L EV   + +  +  +      +   +LV +
Sbjct: 264 DPIRLDDG-WHVVKLLDTDASTTRPLAEVKDVLIQRLRAERADANRRAYVAELVKQ 318


>gi|241764579|ref|ZP_04762596.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
 gi|241365982|gb|EER60603.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
          Length = 309

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 61/183 (33%), Gaps = 21/183 (11%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-------------G 293
           E S +  +  +E +   +   E   +  ++F      D     L+              G
Sbjct: 130 EPSEEACRRYHEAHPAAHAQGERAQLRHVLFAVTPGVDVKQLRLRAEAMLLDLRCADDGG 189

Query: 294 KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            +F + A +     S      LG  S+        A  +F  A+ G  + ++H  FG  +
Sbjct: 190 VRFAEAAAQWSNCPSGQQGGDLGWLSRADCA-PEFAREVFGSAEIGVLSRLVHSRFGLHV 248

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
             V   +     SF+EV+K I   +R            ++  + LA    ++ +      
Sbjct: 249 VEVVAREAGLQPSFEEVRKAIGLTLRQQ----AWVNALRQYLQLLAGAAVVEGVVLDAAD 304

Query: 411 VSI 413
             +
Sbjct: 305 SPL 307


>gi|119945335|ref|YP_943015.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
 gi|119863939|gb|ABM03416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
          Length = 92

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++ADE    LKKG KF  LA++     S      LG F K  +   +     F
Sbjct: 9   HILVKHKEKADEILLQLKKGAKFQILAKKYSTCPSGKKGGDLGEFKKGQMV-PAFDKVAF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
                G+          FG+ +  V
Sbjct: 68  ----TGEILTPHLVKTKFGWHVIKV 88


>gi|124004173|ref|ZP_01689019.1| putative exported isomerase [Microscilla marina ATCC 23134]
 gi|123990243|gb|EAY29742.1| putative exported isomerase [Microscilla marina ATCC 23134]
          Length = 777

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/406 (11%), Positives = 122/406 (30%), Gaps = 71/406 (17%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
            + ++G   +  S F  ++++ L           N + A +       LD  +       
Sbjct: 37  VIATLGANPIYLSDFKYTYEKSLK----------NKDSAYTRSSVSSYLDLYIKFKLKIL 86

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV--FVSRLAREGINEK--------EY 151
             +  G++                      F++++  +  +LA+  + +K        E 
Sbjct: 87  AAQKKGIDTTDA------------------FNNELSTYKEQLAKPYLTDKAKVEELVREA 128

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
            D   + +  + ++        P + ++   K        ++              PS  
Sbjct: 129 YDRLKEEVRVSHILVKVDKEAEPQDTVVAYNKILELRKTVLNGKSFEQVASTHSQSPSAK 188

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN---DELQAEYEKNKEKYFSPE 268
                       + A    ++ Y   +   + +   IS+    +    + K  ++  +  
Sbjct: 189 Q-----GGNIGYFTA---LQMVYPFENASYQTQVGSISDLLRTKFGYHFLKVTDRRKASG 240

Query: 269 IRTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
                 ++     +A            D+ ++ LK G+ + +L  +  +     + G   
Sbjct: 241 KIQTAHIMIMQPAKANAKDSIEAKRKIDKIYERLKAGEDWDKLCRQFSEDQPSKNKGGVL 300

Query: 317 KEYIPD---VSLADSIFSLAKKGDFTPVIHGSF-GYVIAHVSNIKPSFTVSFQEVKKDIA 372
            E+           + F L + GDF+  ++  + G+ I  +   +     +F EV+  I 
Sbjct: 301 PEFGVGEAIPEFEQASFQLKEVGDFSKPVYTPYSGWHIIKLMKKR--TLDTFTEVEPFIR 358

Query: 373 NQMRITK----ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
            ++                 K++  F       ++   +     + 
Sbjct: 359 QKVAKDSRLKVTHRSFIAKLKKINNFRLNPKVANKAIAKAGTTLLK 404


>gi|298506530|gb|ADI85253.1| conserved hypothetical protein [Geobacter sulfurreducens KN400]
          Length = 572

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 73/172 (42%), Gaps = 7/172 (4%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            + + +  F        ++++ D+L+A YE +K +Y  P +  ++ + F +Q  A  A +
Sbjct: 393 QESVIFGHFVEKVIRPDVKVTEDDLKAYYEAHKSEYSYPIMVVLDGIAFNDQNAAQSAAE 452

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP-----DVSLADSIFSLAKKGDFTPVIH 343
            L++G  F    E     +   + G    E +P          + + + A+ G++  V  
Sbjct: 453 KLRQGMDFKWFKENAEGHVDAKAAGVIQFEDVPVTLKTLPEGLNKVITGAQTGEY-RVYS 511

Query: 344 GSFGY-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
              G+  +  V N+ P     F EV+  I   ++  + ++ V E   +L + 
Sbjct: 512 DPNGFTYVILVRNVIPEQVQPFPEVEAAIRKNVQSEQLNKLVVEWADKLRKA 563



 Score = 44.2 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 70/523 (13%), Positives = 153/523 (29%), Gaps = 82/523 (15%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V +V  + +  +    S +     +    G                IL+ +++   + Q 
Sbjct: 61  VATVNDEPITVNDLNASLETVHEGM--MEGKQAPRRNFTD------ILNRIITSKLIIQE 112

Query: 103 IEDIGLEADH------GRVWGEIARSPLFHG------KDNKFSHDVFVSR-----LAREG 145
             +IGL+              ++ R  +          D K     +         +   
Sbjct: 113 GRNIGLDQQEQPKEMIDTFSRKLLRELVLKDHVKDIRPDPKEVEKRYGQLNVEWTFSTLT 172

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
              +E      K L +       V   ++       Q ++  +E+   D + + +   P 
Sbjct: 173 FKNEEDAKKARKALDKGTSFDALVAEEVKEKRAEAKQNEKLKYEHIHPDIVKIIDSLKPG 232

Query: 205 IADP-------------------SNAVLTQWFEK---YKDNYRAPEYKRISYILFDVHEK 242
              P                    +  L    EK       ++A E  R   I     + 
Sbjct: 233 SVGPVIDMQKGAMLFRLDAVKHSDDPKLKDRAEKETLTAARFKALEKFRTELIEKYFKQD 292

Query: 243 EKKIEISNDELQAEYEKNKEKYFS--PEIRTVEQLV----FPNQKEADEAFQSLKKGKKF 296
           +K I+  +      +EK+K  +     + R +  +           A+        G   
Sbjct: 293 KKLIKSLD------FEKDKAGFLKFLEDKRPLATIKGEKPVTVADLAEAIRMKFYHGVDM 346

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK--GDFTPVIHGS-FGYVIAHV 353
             + +++     D  L         +    D  F   K+             FG+ +  V
Sbjct: 347 A-IDQKKVNKAKDSLLFEILATRAIEKEGRDKGFDKKKEYLDKVADYQESVIFGHFVEKV 405

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI-VS 412
             I+P   V+  ++K              +       + + +A        S  EK+   
Sbjct: 406 --IRPDVKVTEDDLKAYYEAH------KSEYSYPIMVVLDGIAFNDQNAAQSAAEKLRQG 457

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA---------LPDGSY 463
           +D        +     + A +   E +   +    + L+K  T A          P+G  
Sbjct: 458 MDFKWFKENAEGHVDAKAAGVIQFEDVPVTLKTLPEGLNKVITGAQTGEYRVYSDPNGFT 517

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
             + ++  IP + +   EV   ++K+ ++ +  + V   A++L
Sbjct: 518 YVILVRNVIPEQVQPFPEVEAAIRKNVQSEQLNKLVVEWADKL 560


>gi|321479467|gb|EFX90423.1| hypothetical protein DAPPUDRAFT_299806 [Daphnia pulex]
          Length = 130

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G KF ++A    +    S   LG   +  +      ++
Sbjct: 38  KVRHILCEKQSKILEALEKLKAGMKFNEVAATYSEDKARSGGDLGWMVRGSMVGP-FQEA 96

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L            P +   FGY I  V   K
Sbjct: 97  AFALPISSLGNPVYTDPPVKTKFGYHIIMVEGKK 130


>gi|82751495|ref|YP_417236.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus RF122]
 gi|258423118|ref|ZP_05686012.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus A9635]
 gi|283770925|ref|ZP_06343817.1| foldase prsA [Staphylococcus aureus subsp. aureus H19]
 gi|123548081|sp|Q2YTZ6|PRSA_STAAB RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|82657026|emb|CAI81463.1| probable peptidyl-prolyl cis-isomerase [Staphylococcus aureus
           RF122]
 gi|257846682|gb|EEV70702.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus A9635]
 gi|283461072|gb|EFC08162.1| foldase prsA [Staphylococcus aureus subsp. aureus H19]
 gi|283471112|emb|CAQ50323.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus ST398]
 gi|298695109|gb|ADI98331.1| probable peptidyl-prolyl cis-isomerase [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 320

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 47/198 (23%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +KYK+N R   Y +             KI+IS+ E++             + +    ++ 
Sbjct: 110 DKYKENLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 149

Query: 278 P-----------NQKEADEAFQSLKK-----GKKFIQLAEEQ----GKSLSDISLGSFSK 317
                       + KEA +  + ++K       KF ++A+++    G +  D  LG   K
Sbjct: 150 KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLK 209

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
               D     ++F L K G+ + V+  SFGY I             F   K+ +  ++  
Sbjct: 210 GQT-DKDFEKALFKL-KDGEVSDVVKSSFGYHIIK-----ADKPTDFNSEKQSLKEKLVD 262

Query: 378 TKASEKVKEDYKRLEEFL 395
            K  +  K      ++ L
Sbjct: 263 QKVQKNPKLLTDAYKDLL 280


>gi|329314517|gb|AEB88930.1| Foldase protein prsA [Staphylococcus aureus subsp. aureus T0131]
          Length = 320

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 47/198 (23%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +KYK+N R   Y +             KI+IS+ E++             + +    ++ 
Sbjct: 110 DKYKENLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 149

Query: 278 P-----------NQKEADEAFQSLKK-----GKKFIQLAEEQ----GKSLSDISLGSFSK 317
                       + KEA +  + ++K       KF ++A+++    G +  D  LG   K
Sbjct: 150 KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLK 209

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
               D     ++F L K G+ + V+  SFGY I             F   K+ +  ++  
Sbjct: 210 GQT-DKDFEKALFKL-KDGEVSEVVKSSFGYHIIK-----ADKPTDFNSEKQSLKEKLVD 262

Query: 378 TKASEKVKEDYKRLEEFL 395
            K  +  K      ++ L
Sbjct: 263 QKVQKNPKLLTDAYKDLL 280


>gi|323438380|gb|EGA96144.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus O11]
 gi|323441708|gb|EGA99353.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus O46]
          Length = 213

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 47/198 (23%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +KYK+N R   Y +             KI+IS+ E++             + +    ++ 
Sbjct: 3   DKYKENLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 42

Query: 278 P-----------NQKEADEAFQSLKK-----GKKFIQLAEEQ----GKSLSDISLGSFSK 317
                       + KEA +  + ++K       KF ++A+++    G +  D  LG   K
Sbjct: 43  KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLK 102

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
               D     ++F L K G+ + V+  SFGY I             F   K+ +  ++  
Sbjct: 103 GQT-DKDFEKALFKL-KDGEVSDVVKSSFGYHIIK-----ADKPTDFNSEKQSLKEKLVD 155

Query: 378 TKASEKVKEDYKRLEEFL 395
            K  +  K      ++ L
Sbjct: 156 QKVQKNPKLLTDAYKDLL 173


>gi|253690377|ref|YP_003019567.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756955|gb|ACT15031.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 93

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +++A++    L+KG  F +LA++     S      LG F K  +   +   ++F
Sbjct: 9   HILVDTEQQANDILAQLEKGADFQKLAQKHSTCPSKRNGGDLGEFRKGDMV-PAFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L K       +   FGY +  V
Sbjct: 68  SCELLKP---FGPVKTQFGYHVIKV 89


>gi|149375261|ref|ZP_01893032.1| peptidyl-prolyl cis-trans isomerase C2 [Marinobacter algicola
           DG893]
 gi|149360297|gb|EDM48750.1| peptidyl-prolyl cis-trans isomerase C2 [Marinobacter algicola
           DG893]
          Length = 92

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
             T   ++  ++ + +E   +++ G+ F ++A++     S      LG+F    +     
Sbjct: 3   QATARHILVDSEAKCEELKLAIEGGQDFAEVAKQHSSCPSGRNGGDLGAFGPGQMV-PEF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
              +FS  +       +   FGY +  V++ 
Sbjct: 62  DKVVFS-GEVNKVLGPVKTQFGYHLLEVTSR 91


>gi|300770932|ref|ZP_07080809.1| peptidyl-prolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762205|gb|EFK59024.1| peptidyl-prolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 458

 Score = 70.8 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 55/392 (14%), Positives = 130/392 (33%), Gaps = 44/392 (11%)

Query: 136 VFVSRLAREGINEKEYIDHY---TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            +   LA+ G++  E    Y     +  +       +  +  S   +D            
Sbjct: 46  QYSQNLAQ-GMSPNEDFKCYILQQLLTQKLLAQQAVLDSIEVSESEVDDNLNNRL----- 99

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK----KIEI 248
                   +V          L  +  +    Y+  E +          + ++    KI++
Sbjct: 100 --------NVMTRQAGGKERLESFLNRSLLQYK-EEMRTSVAEQLKAQKMQQNIVQKIDV 150

Query: 249 SNDELQAEYE---KNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKKF 296
           +  E++  +E   K+   YF  E+   E +++P         ++K A++  + +  G  F
Sbjct: 151 TPLEVKRYFEGLNKDSLPYFDTEVEIGEIVMYPVLTKEEKEASRKRAEDLRKQIVDGSDF 210

Query: 297 IQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +A    E++G +++   LG  +++       +   F L K G+ + V    +G+    
Sbjct: 211 GTIARLYSEDKGSAVAGGDLGFSTRDNYVK-EFSAVAFKL-KPGEISQVFETEYGFHFLQ 268

Query: 353 VSNIKPSFTVS---FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           V   +     +      +K   A+  R     + + +     +       +    ++  K
Sbjct: 269 VLERRGEEVRARHILVSIKPTNASLERTKVKMDSLYQKLINKKIDFYTAATQYSDNKETK 328

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
                +   + +      K  A++      L         L ++   A   G  +   +K
Sbjct: 329 FNGGMVTDQNRSTLIPVNKLEASVFTAIDPLKAGEYSQPTLFQEEGPAGKSGYRISF-LK 387

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
             IP     L++  + +K+     KT  ++S 
Sbjct: 388 TRIPPHKANLDQDFSKIKEAASEDKTRRKLSE 419


>gi|167841272|ref|ZP_02467956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           thailandensis MSMB43]
          Length = 296

 Score = 70.8 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 59/157 (37%), Gaps = 15/157 (9%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----------FQSLKKGKKFI 297
           S+ E+QA Y++N   + +P    V Q+       A+ A             S  +   F 
Sbjct: 122 SDAEIQAAYDRNLPAFMAPRALHVAQIYIAVPPNAEAATLDKARRQAADLASRARNGDFA 181

Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            LA+   +  +  + G    F  E +    +  +  +L K G  +  I    G+ +  + 
Sbjct: 182 ALAKANSQDHASAANGGDLGFVPEPLMLPEVRQAAGAL-KPGQVSAPIRTPAGFHVVKLI 240

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + + +      +VK+ +   +R  +  +  +    +L
Sbjct: 241 DARAAAPRPLADVKEQVRAMLRAQRTQQNAQAYLAKL 277


>gi|254782280|sp|B5KFL3|PIN4_TAEGU RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4; AltName: Full=Parvulin-14; Short=Par14; AltName:
           Full=Peptidyl-prolyl cis-trans isomerase Pin4;
           Short=PPIase Pin4; AltName: Full=Rotamase Pin4
 gi|197129863|gb|ACH46361.1| putative peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           variant 1 [Taeniopygia guttata]
          Length = 128

 Score = 70.8 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++      A EA + LK G++F ++A +  +  +     LG  ++  +      ++
Sbjct: 36  KVRHILCEKHGRAMEAMEKLKSGQRFSEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 94

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L      K     P +   FGY I  V   K
Sbjct: 95  AFALPVSSMDKPVYTDPPVKTKFGYHIIMVEGRK 128


>gi|332285620|ref|YP_004417531.1| peptidyl-prolyl cis-trans isomerase C [Pusillimonas sp. T7-7]
 gi|330429573|gb|AEC20907.1| peptidyl-prolyl cis-trans isomerase C [Pusillimonas sp. T7-7]
          Length = 93

 Score = 70.8 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
             +   ++   + + +E   +++ G  F ++A E     S     +LG+F    +     
Sbjct: 3   QASARHILVSTEDKCNELKTAIEGGADFAEVARENSSCPSSRDGGNLGTFGPGQMVK-EF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            + +FS A        +   FGY +  V++ +
Sbjct: 62  DEVVFS-APVNVVQGPVKTQFGYHLVEVTSRQ 92


>gi|329894605|ref|ZP_08270411.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [gamma proteobacterium IMCC3088]
 gi|328922959|gb|EGG30287.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [gamma proteobacterium IMCC3088]
          Length = 421

 Score = 70.8 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 53/416 (12%), Positives = 120/416 (28%), Gaps = 85/416 (20%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  V    +  S            I+ + G     E A    L ++ LD L+  +  
Sbjct: 28  DKVIAVVDDDVIMESELQERLIVVKNNITSR-GLEAPPEDA----LVRETLDRLILESIQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM- 158
            Q     G+  +  ++   + R                    ++ G+  ++++D   +  
Sbjct: 83  LQKGVRYGIRIEDQQLAAAVGRLA------------------SQNGLTPQQFVDQLEQSG 124

Query: 159 ---------LSRTDVVGMFVGGMRPS--NLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
                    + R  ++    GG      ++   + + F         I    R + A  D
Sbjct: 125 GSYGELLANIEREMIIQRVQGGNVNQRIDITTAEIEAFLDTEEGQQLIQPAYRLIHARLD 184

Query: 208 PSNA----VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI---SNDELQAEY--- 257
            S+         + E   +   A E             + K  ++      +L + +   
Sbjct: 185 VSDDIDLDAARTYVESLAERINAGEEFNEVIGASTDPYQFKGGDLGIRPESDLPSLFAPI 244

Query: 258 --EKNKEKYFSP-------------EIR---------TVEQLVFP-----NQKEADEAFQ 288
                +  +  P             E R         +V  ++         ++A E   
Sbjct: 245 APTMEQGSFAGPIENGRSFHFIYLLEKRGGTQIIPQTSVRHILIKPSEILTNEQAQELAA 304

Query: 289 SLKK----GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
            L++    G+ F  LA E  + +        LG  S   +    + +   S A+    T 
Sbjct: 305 ELRQRALDGEDFADLAREYSEDIGSAQEGGDLGWASPGQMV--PVFEEQMSNAELNAITE 362

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
                FG+ I  V + +          +    + +   K  E+++   +++ +   
Sbjct: 363 PFQSQFGWHILQVMDRRDQDVTQIVN-RNRAQDYLHNQKYQEELEAWLQQIRDEAF 417


>gi|91087021|ref|XP_974228.1| PREDICTED: similar to peptidyl-prolyl cis-trans isomerase
           [Tribolium castaneum]
 gi|270010516|gb|EFA06964.1| hypothetical protein TcasGA2_TC009923 [Tribolium castaneum]
          Length = 128

 Score = 70.8 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G+KF ++A    +  +     LG  ++  +      D+
Sbjct: 36  KVRHILCEKQGKCLEALEKLKAGQKFPEVAAAYSEDKARQGGDLGWMTRGSMVGP-FQDA 94

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L            P +   FGY I  V   K
Sbjct: 95  AFALPVSNVNNPVYTDPPVKTKFGYHIIMVEGKK 128


>gi|50123136|ref|YP_052303.1| peptidyl-prolyl cis-trans isomerase C [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613662|emb|CAG77113.1| peptidyl-prolyl cis-trans isomerase C [Pectobacterium atrosepticum
           SCRI1043]
          Length = 93

 Score = 70.8 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   ++ A++    L+KG  F +LA++     S      LG F K  +   +   ++F
Sbjct: 9   HILVDTEQLANDILAQLEKGADFQKLAQKHSTCPSKRNGGDLGEFRKGDMV-PAFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L K       +   FGY +  V
Sbjct: 68  SCELLKP---FGPVKTQFGYHVIKV 89


>gi|260103202|ref|ZP_05753439.1| peptidylprolyl isomerase [Lactobacillus helveticus DSM 20075]
 gi|260082993|gb|EEW67113.1| peptidylprolyl isomerase [Lactobacillus helveticus DSM 20075]
          Length = 306

 Score = 70.8 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 80/240 (33%), Gaps = 30/240 (12%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +++              + L +       E +   Y+                     + 
Sbjct: 47  ITQQQYYDEMKKSQAGKSALANMIINRALEQQYGKYVSSKKVDKK-------------YS 93

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSP-----EIR 270
            YK  Y +     +          ++ ++   +S   L+   + +K++            
Sbjct: 94  NYKKQYGSQFSAVLQQNGMTASTFKQNLKTNLLSEAALKHINKISKKQEQQAWKNYQPKV 153

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-----GSFSKEYIPDVSL 325
           TV+ ++   +  A+   + LK GK F  LA++     +  +         S +   D + 
Sbjct: 154 TVQHILVAKKSTAESIIKQLKDGKSFKSLAKKYSLDTATKNKAGKLPAFDSTDNTLDSAF 213

Query: 326 ADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             + F L K G+ T   +    GY +  + +  P+    F + KK I +++  + A ++ 
Sbjct: 214 KTAAFKL-KTGEVTESPVKSQSGYHVIKMIS-HPAKGK-FADHKKAIDDEIYASMAQDQA 270



 Score = 38.0 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 89/301 (29%), Gaps = 64/301 (21%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           +   ++TV S    K+    +                     +  +     K  L N++ 
Sbjct: 32  NSGNNATVASYKGGKITQQQYY--------------------DEMKKSQAGKSALANMII 71

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L+Q     G      +V     +   +  +        F + L + G+    +  + 
Sbjct: 72  NRALEQQ---YGKYVSSKKVDK---KYSNYKKQYGS----QFSAVLQQNGMTASTFKQNL 121

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
              L             + S     QA + Y    +V +I++  +        +   + +
Sbjct: 122 KTNLLSE---AALKHINKISKKQEQQAWKNYQPKVTVQHILVAKKS-------TAESIIK 171

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE------- 268
             +  K      +   +     +   K    + +++ L + ++    K  + E       
Sbjct: 172 QLKDGKSFKSLAKKYSLDTATKNKAGKLPAFDSTDNTLDSAFKTAAFKLKTGEVTESPVK 231

Query: 269 -------IRTVEQLV---FPNQKEA--DEAFQSLKKGKK-----FIQLAEEQGKSLSDIS 311
                  I+ +       F + K+A  DE + S+ + +         + +  G S+ D  
Sbjct: 232 SQSGYHVIKMISHPAKGKFADHKKAIDDEIYASMAQDQAVMKDVIATVLKNAGVSIKDND 291

Query: 312 L 312
           L
Sbjct: 292 L 292


>gi|320103011|ref|YP_004178602.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida
           ATCC 43644]
 gi|319750293|gb|ADV62053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida
           ATCC 43644]
          Length = 370

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/396 (10%), Positives = 100/396 (25%), Gaps = 93/396 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  V    +               I  +I     +E   +  +    ++ LV+   L
Sbjct: 61  DQPLAVVNATPITRRDVQ--------RIMAQIELAPGAEIQDAYNM---AVEMLVNTELL 109

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            QF+   G+      +  E+A                    L  + +  ++         
Sbjct: 110 FQFLNRQGITVTKKDLDDELA---------------RLSESLKAQNLTLEQ--------- 145

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                  +   G     L  D  +   +E                    +   L ++   
Sbjct: 146 ------ALAANGATMQELQKDLTRAKLWEKYVTRVA-------------TEERLKKYVAD 186

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            +D +   +      +L       ++++ S                              
Sbjct: 187 NQDLFNGVKVTARHILLKVPEGASEEVKAS-----------------------------I 217

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKS------LSDISLGSFSKEYIPDVSLADSIFSL 332
           + +       ++ GK +F + A++  +        S   LG F +        A++ F  
Sbjct: 218 KAKLLAIKAEIESGKIEFAEAADKYSEDDGNKQQPSGGFLGEFYRRGQLIEEFAEAAFK- 276

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            K G  +  +   FGY +  V+N        F++ +     Q       E +    ++ +
Sbjct: 277 CKPGVISDPVETEFGYHLILVTNRDEGQPFDFEKGRDIAFQQFESELREEVI--LAEKAK 334

Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
             +       ++                +     G 
Sbjct: 335 AKIEKQPMPSDLVPPATSPETAPSPTPASATPASGS 370


>gi|199599418|ref|ZP_03212812.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus rhamnosus
           HN001]
 gi|199589671|gb|EDY97783.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus rhamnosus
           HN001]
          Length = 300

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 32/235 (13%)

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVD-YIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           V    G     +   D  K+      ++   IVL           S+  +   F K K  
Sbjct: 25  VANMKGAKVTKDEYYDAMKKTTTGQATLRNMIVLKALEQQYPNKVSDKKVNSQFNKLKKQ 84

Query: 224 Y-----RAPEY---------KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           Y        E           +I   L+     +   + +  +++++++K + K      
Sbjct: 85  YGSSFDSTLEQNGYTESSFKDQIRTTLYSEVALKDMKKPTTKQIESQWKKYQPKI----- 139

Query: 270 RTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKSLSDISLG-----SFSKEYIP 321
             V+ ++   + EA +     +K    K F  LA++        + G       + +   
Sbjct: 140 -QVQHILVKTEDEAKQIISDYQKDPTEKNFESLAKKNSIDNGTKNKGGKLAAFDNTDTSL 198

Query: 322 DVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           D +   + F L K GD T   +   +GY +  V +I  +   + +E KKD+  Q+
Sbjct: 199 DSTFKSAAFKLKKAGDITTTPVKTQYGYHVIRVISI--AKKGTMKEHKKDLEKQI 251


>gi|187929591|ref|YP_001900078.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12J]
 gi|309781629|ref|ZP_07676363.1| peptidyl-prolyl cis-trans isomerase [Ralstonia sp. 5_7_47FAA]
 gi|187726481|gb|ACD27646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12J]
 gi|308919604|gb|EFP65267.1| peptidyl-prolyl cis-trans isomerase [Ralstonia sp. 5_7_47FAA]
          Length = 261

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----------DEAFQSLKKGKKF 296
           E +  + +  Y+ +  ++   +I     ++F     A              Q L+  + F
Sbjct: 85  EPTRADCERYYQNHPARFRRNDIVYASHILFAVTDRAPVALLLQKAQQTLQQVLEAPETF 144

Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             +A E     S     SLG   +           +F   + G    ++   FG+ +  +
Sbjct: 145 EAVAREVSNCPSAGVGGSLGQLLRGDSV-PEFERVLFDSTETGVLPRIVKTRFGFHVVRI 203

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +     TV F  V+ +IA  +   +   K  + Y  +            ++ + ++  +
Sbjct: 204 EHRVAGDTVPFDAVEAEIAQYL-EARVRHKATQQYVSI------------LASQAQVEGV 250

Query: 414 DLPLVD 419
           DL   +
Sbjct: 251 DLGAAN 256


>gi|329962622|ref|ZP_08300570.1| PPIC-type PPIASE domain protein [Bacteroides fluxus YIT 12057]
 gi|328529653|gb|EGF56551.1| PPIC-type PPIASE domain protein [Bacteroides fluxus YIT 12057]
          Length = 523

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 60/425 (14%), Positives = 126/425 (29%), Gaps = 65/425 (15%)

Query: 249 SNDE-----LQAEYEKNKEKYFSPEIRTVEQL------------VFPNQKEADEAFQSLK 291
           +++E      +  Y+K K    + ++R V  +            +   + + D  ++SL 
Sbjct: 108 TDEETNERVARRFYDKMKSGRRAGQVR-VSHIYKSLPQNISGYTLRKVEAKMDSIYESLG 166

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           KG       +   K  SD     + +         +  F L + G+ +       G  I 
Sbjct: 167 KGAT-AAAFDAYVKDFSDDKTTFWVRWLQMPAEFEEVAFDL-QPGEISRPFFTPQGIHIV 224

Query: 352 HVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
            V   K      F EVK++ I  + R     +  +   ++L++          +      
Sbjct: 225 KVLERKA--VPPFDEVKEEMIRCRTRRHGMDKGTEALVEKLKQEYHYTPDRAGMEELMSK 282

Query: 411 VSIDLPLVDFAGKDVKGKEVA-AIPYKEQLLFRVFGKDDPLSKDHTVALPDGS----YMW 465
                 L    G+   GKE A       + + R             +   +      Y  
Sbjct: 283 GQTGRTLFTLGGRSYTGKEFARFAAAHPEGIQRQLN---GFVMKSVLDYENNHLERKYPV 339

Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE--------------------------- 498
            ++       D    E+    ++ W   KT E                            
Sbjct: 340 FRLLMQKYREDMLFNEISN--REVWGRSKTDEAGLKGYFEDHRQNYHWEAPRYKGIVLHC 397

Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
            S + ++ V ++ K G    +    +  +    +    +  E   F     + V     +
Sbjct: 398 TSKRVSKQVRKFLK-GLPENEWLDAIRLTFNVGDTPK-VQAEQGLFARGDNAYVDDLVFK 455

Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
             +  P+   +S+    V   KV   ++  +    L       L    IA L++   V +
Sbjct: 456 GKEPAPV---MSFPFTAVLGKKVKGPEDYREVGGQLVTDYQNYLEQRWIAKLRAAGKVEI 512

Query: 619 HDNLI 623
           +  ++
Sbjct: 513 NQEVL 517


>gi|89093533|ref|ZP_01166481.1| peptidyl-prolyl cis-trans isomerase C [Oceanospirillum sp. MED92]
 gi|89082223|gb|EAR61447.1| peptidyl-prolyl cis-trans isomerase C [Oceanospirillum sp. MED92]
          Length = 93

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADS 328
              ++   + EA+   + LK G  F +LA++     S      LG F +  +      D 
Sbjct: 7   ARHILVKTRDEAERLKKRLKLGNDFGKLAKKYSLCPSGKRHGDLGEFRRGQMVKP-FEDV 65

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAH 352
           +F      +    +   FG+ +  
Sbjct: 66  VFKKPLH-EVHGPVKTRFGWHLIE 88


>gi|309388964|gb|ADO76844.1| SurA domain protein [Halanaerobium praevalens DSM 2228]
          Length = 425

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 88/280 (31%), Gaps = 26/280 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-------TVVSVGRQKVPF 53
           M + +R  SR  +  + ++   +     G    L +  G          +  V   ++  
Sbjct: 1   MFDTLRNNSR-IIVYLVVIAFVISGGFMGYGAYLNNRGGGQAPNQGPAVIAEVNGMEISQ 59

Query: 54  SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIE--DIGLEAD 111
             + +  +Q      Q     ++S +   +    ++L+ L+    +    E  DI +E  
Sbjct: 60  QEYYSMLQQ------QAPNSSLSSSQI--IPFRYQVLEALIERKLILAKAEEFDIQVEVS 111

Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML----SRTDVVGM 167
              V            + N+ +       LA +G    E  ++    L    + T+ +  
Sbjct: 112 DSEVDENYNNI----LEQNEITDQELAETLAEQGSTIGELRENIKDSLQNTKTLTEAINQ 167

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
            VG +  S+  + +     +     +       +       S   L +     K   +  
Sbjct: 168 GVGKVEVSDQEIQKLYNQRYLKVETESKKTETENSKQKESDSEPKLEEVSSDLKTEIKNK 227

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
           +            + + +I+I+   L+A ++   E Y   
Sbjct: 228 KRNEAINNWLKELKTDAQIKINQPVLKAYHDLENENYEQA 267


>gi|53722183|ref|YP_111168.1| rotamase/peptidyl-prolyl cis-trans isomerase family protein
           [Burkholderia pseudomallei K96243]
 gi|76817394|ref|YP_335277.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           1710b]
 gi|126456222|ref|YP_001075575.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia pseudomallei 1106a]
 gi|167742587|ref|ZP_02415361.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 14]
 gi|167819750|ref|ZP_02451430.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 91]
 gi|167849600|ref|ZP_02475108.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei B7210]
 gi|167906559|ref|ZP_02493764.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei NCTC
           13177]
 gi|167914915|ref|ZP_02502006.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 112]
 gi|217419213|ref|ZP_03450720.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 576]
 gi|226200237|ref|ZP_03795782.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei Pakistan
           9]
 gi|242311165|ref|ZP_04810182.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 1106b]
 gi|254190243|ref|ZP_04896752.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193423|ref|ZP_04899857.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei S13]
 gi|254263976|ref|ZP_04954841.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1710a]
 gi|254300502|ref|ZP_04967948.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 406e]
 gi|52212597|emb|CAH38623.1| putative rotamase/peptidyl-prolyl cis-trans isomerase family
           protein [Burkholderia pseudomallei K96243]
 gi|76581867|gb|ABA51341.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           1710b]
 gi|126229990|gb|ABN93403.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 1106a]
 gi|157810082|gb|EDO87252.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 406e]
 gi|157937920|gb|EDO93590.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|169650176|gb|EDS82869.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei S13]
 gi|217398517|gb|EEC38532.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 576]
 gi|225927745|gb|EEH23787.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei Pakistan
           9]
 gi|242134404|gb|EES20807.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 1106b]
 gi|254214978|gb|EET04363.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1710a]
          Length = 265

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 18/172 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQS-LKKGKKF 296
           E + D  +  Y  +  ++   +I     ++F           ++EA+      L + + F
Sbjct: 89  EPTRDACERYYLNHAARFRRRDIVYASHILFAVTDATPLAPLRREAEATLARVLAEPQTF 148

Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
              A E      +    SLG   +          ++F     G    +++  FG+ I  +
Sbjct: 149 EARARELSNCPSAQVGGSLGQLLRGDSV-PEFDAAVFDTTDSGVLPRLVNTRFGFHIVRI 207

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
               P   V F  V  +IA  +    A     +  ++    LA G  ++ ++
Sbjct: 208 ERRVPGDPVPFDAVAAEIAAFL----AERVRHKAIQQYVTILASGARIEGVA 255


>gi|289548355|ref|YP_003473343.1| hypothetical protein Thal_0582 [Thermocrinis albus DSM 14484]
 gi|289181972|gb|ADC89216.1| hypothetical protein Thal_0582 [Thermocrinis albus DSM 14484]
          Length = 275

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 80/208 (38%), Gaps = 17/208 (8%)

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKY-KDNYRAP---EYKRISYILFDV-HEKEKKI 246
           V   ++           ++  L ++ EK       +P   E  ++  +   +     + I
Sbjct: 64  VRGKIVEREAKKMGLSVTSKELDEYIEKNVGSKNLSPVVIELLKVEVLTQKITDRIARHI 123

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            I++D++ A Y  N   +  P    + + V  +   A+E +  L KG  ++ +       
Sbjct: 124 RITDDQITAYYYLNLRDFKLPAQVLLSRYVAEDLDTANELYYRLSKG--YLSV-----SD 176

Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           L  + +G    +S + +P+  +  S     ++G  T  I    GY+I  V   +    + 
Sbjct: 177 LRGVKVGPPMWYSIQTLPE--IVKSQLYPYEEGKVTKPIQTEAGYLILRVVRRRGGGILP 234

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391
            +E K  +  ++   +  E  ++  + +
Sbjct: 235 LEEAKPLVREKLLKERRQEVFRKWLEEV 262



 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 83/241 (34%), Gaps = 21/241 (8%)

Query: 270 RTVEQLVFP--NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           R +  L     ++K+ +E    L +GK   + A++ G S++   L  + ++ +   +L+ 
Sbjct: 41  REIIHLPIAQASRKDMEEFLIELVRGKIVEREAKKMGLSVTSKELDEYIEKNVGSKNLSP 100

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-DIANQMRITKASEKVKE 386
            +  L K    T  I       I  +++ +      +  ++   +  Q+ +++   +  +
Sbjct: 101 VVIELLKVEVLTQKITDRIARHI-RITDDQ-ITAYYYLNLRDFKLPAQVLLSRYVAEDLD 158

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
               L   L+ G                L + D  G  V      +I    +++      
Sbjct: 159 TANELYYRLSKGY---------------LSVSDLRGVKVGPPMWYSIQTLPEIVKSQLYP 203

Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
            +       +    G Y+ +++          LEE    V++     +  E       ++
Sbjct: 204 YEEGKVTKPIQTEAG-YLILRVVRRRGGGILPLEEAKPLVREKLLKERRQEVFRKWLEEV 262

Query: 507 V 507
           +
Sbjct: 263 L 263


>gi|288937797|ref|YP_003441856.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
           At-22]
 gi|290513193|ref|ZP_06552555.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella sp. 1_1_55]
 gi|288892506|gb|ADC60824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
           At-22]
 gi|289774404|gb|EFD82410.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella sp. 1_1_55]
          Length = 93

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A E    L++G  F  LA+   K  S      LG F +  +       ++F
Sbjct: 9   HILVKEEKLAHEILAKLERGISFDHLAKRYSKCPSGRHGGDLGEFPQGTMVGP-FDQAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L K       +   FGY I  V
Sbjct: 68  SCPLLKP---YGPVKTKFGYHIIKV 89


>gi|269123720|ref|YP_003306297.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Streptobacillus
           moniliformis DSM 12112]
 gi|268315046|gb|ACZ01420.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Streptobacillus
           moniliformis DSM 12112]
          Length = 599

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 52/427 (12%), Positives = 136/427 (31%), Gaps = 65/427 (15%)

Query: 83  VGLDKKILDNLVSGA-------TLDQFIEDIGLEADHGRVWGEIARSPL--FHGKDNKFS 133
             +  ++ D++++          ++    +  +      +   + +     F  ++ KF 
Sbjct: 199 AEVKDEVKDDILNEKAKIYEKSLIENKFNNAKISISDKTIEPALNKLKEVFFEKEEYKF- 257

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
              ++  L+                     +V +F               +   E     
Sbjct: 258 --TYMDVLS--------------------QIVNLFFKQGNGYTEDFQNMIKGLIETDLDK 295

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
            I + ++ + +    +  +L ++    +  Y A EY       +           + +E+
Sbjct: 296 KIRIRDKAIESGLTLNQDLLPKY----QLEYIAEEYVSKLIGSYVA---------TEEEM 342

Query: 254 QAEYEKNKEKYFSPEIRTVEQL---VFPNQKEADEAFQSLKK------GKKFI----QLA 300
           +A + K +  +      + E +     P+  +A E    + +       + F     +L+
Sbjct: 343 RAIFNKYQGAFDIQHTVSGEIIGMAYIPSDDDAKETENKVIELMKTITKENFADKARELS 402

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           ++ G + +   LG  +           ++ + A+ G     I   FGY I  V   K   
Sbjct: 403 KDPGSAQNGGDLGKANINNFV-PEFRTAV-AKAEAGSIVGPIKTQFGYHIILVEE-KDEN 459

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSIDLPLVD 419
                 +K  +       +  E++K     ++E +     + + I+        +  + D
Sbjct: 460 NKDIATLKHILIKVEAGERTKEEIKNKVLEIKELITSNKLTWENITSDTTGKYNEYGIKD 519

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
              K  +  ++  + Y + +  ++F        D      D S++ +Q  E  P +    
Sbjct: 520 HFSKVKQNDKLPVVGYDKTVNSKLFSAKVG---DFIEISLDDSFVIIQKTEDTPYKKVSY 576

Query: 480 EEVLTDV 486
            EV   +
Sbjct: 577 NEVKEKL 583



 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 90/266 (33%), Gaps = 32/266 (12%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ---ELGMISQ 69
           V  +F+ +  +  +         +    + ++ +  +K+    F   +     ++  +++
Sbjct: 12  VITVFIAIAMLIPVFMSAYTYFSNREKKTVMLKIDGEKIYKEDFDKKYDNFSKQIESLNE 71

Query: 70  KIGFVVNSERARSVGLDKK-----ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
           +I    N ++ +   L ++     +L   V  A     I ++G  A    +  +      
Sbjct: 72  QIIKAKNLDKEKYQALPEELVKGYVLAGQVYEALNKVLINELGARASKKEIEQK------ 125

Query: 125 FHGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
           F   +++       ++ L  +G   +   +     L     + +    +  ++  +++  
Sbjct: 126 FKELEDQLGGSKGLITALNAQGQTVENLRETIKMFLLNDKKLEIIKQKISVTDKEIEE-- 183

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
                         N R      D S A +    ++ KD+    + K     L +     
Sbjct: 184 ------------RFNQRKFTEYEDKSFAEVK---DEVKDDILNEKAKIYEKSLIENKFNN 228

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEI 269
            KI IS+  ++    K KE +F  E 
Sbjct: 229 AKISISDKTIEPALNKLKEVFFEKEE 254


>gi|189463690|ref|ZP_03012475.1| hypothetical protein BACINT_00021 [Bacteroides intestinalis DSM
           17393]
 gi|189438640|gb|EDV07625.1| hypothetical protein BACINT_00021 [Bacteroides intestinalis DSM
           17393]
          Length = 528

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-----------EQLVFPNQKE 282
           Y             +S    +  Y+K K    + ++R               L+   +  
Sbjct: 106 YRRQLAKTYLTDETVSELAARQIYDKMKANQRAGQVRVSHIFKSLPQTATSHLLRTTETR 165

Query: 283 ADEAFQSLKKG-KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
            D  + +L+ G   F               +              D++F + K G+ +  
Sbjct: 166 MDSLYTALQNGQADFDACVRNFSDEKKSFWVSWLQ----MPAEFEDTVFKM-KPGEISRP 220

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRI---TKASEKVKEDYKR------- 390
                G  I  V   K    + F++VK + I  Q R     K +E + E  K+       
Sbjct: 221 FFTPQGIHIVKVLERKD--ILPFEDVKDEIIRRQTRRHGMDKGTESLVEKLKKEYQYTPD 278

Query: 391 ---LEEFLALGTS 400
              ++E LA G +
Sbjct: 279 KVGMDELLAKGQT 291


>gi|152972768|ref|YP_001337914.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238892379|ref|YP_002917113.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040911|ref|ZP_06014137.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330012127|ref|ZP_08307289.1| peptidyl-prolyl cis-trans isomerase [Klebsiella sp. MS 92-3]
 gi|150957617|gb|ABR79647.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238544695|dbj|BAH61046.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041800|gb|EEW42845.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533942|gb|EGF60601.1| peptidyl-prolyl cis-trans isomerase [Klebsiella sp. MS 92-3]
          Length = 93

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A E    L++G  F  LA+   K  S      LG F +  +       ++F
Sbjct: 9   HILVKEEKLALEILAKLERGVSFDHLAKRYSKCPSGRNGGDLGEFQQGAMVGP-FDQAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L K       +   FGY I  V
Sbjct: 68  SCPLLKP---YGPVKTKFGYHIIKV 89


>gi|325106143|ref|YP_004275797.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans
           DSM 12145]
 gi|324974991|gb|ADY53975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans
           DSM 12145]
          Length = 454

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 57/483 (11%), Positives = 131/483 (27%), Gaps = 102/483 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  VG   +  S     + Q +       G   +        +   I+ +++S   L
Sbjct: 24  DKVVAVVGDNIILQSEVEQQYAQYILQ-----GTKPDP------NIKCYIMQSMLSQKLL 72

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            +      +  + G V  E+                                      M+
Sbjct: 73  TKQAAIDSIVVEDGDVDNEV--------------------------------ERRMRTMI 100

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIVLNN---RHVPAIADPSNAVLTQ 215
           +R        G  R    L      +  E R  +   ++       +    + +   + +
Sbjct: 101 TRA------GGEQRLEEFLGRPVILYKDEIRPDIREQLVAQKMQAKITEKVEVTPLDVRR 154

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +++    +               +     ++E+    +         K    E  T    
Sbjct: 155 FYQAIPKD--------------SLPVYNTEVEVGEIVI-------YPKLTKEEKETY--- 190

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
               + + +     +K G  F  LA    ++ G +     L  F +  +         F 
Sbjct: 191 ----KDKLEALRLRIKNGDSFATLARLYSQDPGSARDGGELPFFDRNTMAK-EFTAWAFK 245

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ---MRITKASEKVK 385
           L K G+ +PV    FG+    V   +       + V+     I        + +A  ++ 
Sbjct: 246 L-KPGELSPVFETEFGFHFLEVLERRG------ENVRARHILIVPDSPPAALERARVEID 298

Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
             Y+++       ++   +         +  ++       +   +        +   V  
Sbjct: 299 SIYQKVVAKKMDFSAAASLYSGNNDTKYNGGMILNYESSNRTTYIPTDKLDPSIFLVVDT 358

Query: 446 KDDPLSKDHTVALPD---GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                     V   +     Y ++ +K  IP     LE+    +K+     KT++ VS  
Sbjct: 359 MKVGSYSKPDVFTDNRGKKGYRFLYLKTKIPPHTANLEQDFPKIKEAAYEEKTSKVVSDW 418

Query: 503 ANQ 505
             +
Sbjct: 419 FEK 421


>gi|282917109|ref|ZP_06324867.1| foldase prsA [Staphylococcus aureus subsp. aureus D139]
 gi|282319596|gb|EFB49948.1| foldase prsA [Staphylococcus aureus subsp. aureus D139]
          Length = 320

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 47/198 (23%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +KYK+N R   Y +             KI+IS+ E++             + +    ++ 
Sbjct: 110 DKYKENLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 149

Query: 278 P-----------NQKEADEAFQSLKK-----GKKFIQLAEEQ----GKSLSDISLGSFSK 317
                       + KEA +  + ++K       KF ++A+++    G +  D  LG   K
Sbjct: 150 KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLK 209

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
               D     ++F L K G+ + V+  SFGY I             F   K+ +  ++  
Sbjct: 210 GQT-DKDFEKALFKL-KDGEVSDVVKSSFGYHIIK-----ADKPTDFNSQKQSLKEKLVD 262

Query: 378 TKASEKVKEDYKRLEEFL 395
            K  +  K      ++ L
Sbjct: 263 QKVQKNPKLLTDAYKDLL 280


>gi|254522729|ref|ZP_05134784.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas sp.
           SKA14]
 gi|219720320|gb|EED38845.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas sp.
           SKA14]
          Length = 299

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 63/189 (33%), Gaps = 22/189 (11%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK---GKK 295
           + +       ++++ +  +E+N E++ SP+   +  ++      AD+          G++
Sbjct: 115 LEDAIDDRVPTDEDCRRYFEQNPERFRSPDRVRLRHILLAAP--ADDVAGRFAARTEGER 172

Query: 296 -----------FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
                      F   A        S     LG   +           +F L + G     
Sbjct: 173 LVGLLKESPHLFADFALRHSRCPSSSEGGDLGWLQRGQTT-PEFDRQVFRLRE-GLAGFP 230

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +   +GY +  V   +      F+ V   + + + +     +V+    +L+E       +
Sbjct: 231 VESRWGYHVVCVDAREEGQPQPFEAVLPQLRDYLELQVRQREVQAYLLQLQE-RYPVRGL 289

Query: 402 DEISRREKI 410
           +EI     I
Sbjct: 290 EEIEAEADI 298


>gi|294786339|ref|ZP_06751593.1| peptidylprolyl isomerase PrsA1 [Parascardovia denticolens F0305]
 gi|315225880|ref|ZP_07867668.1| peptidyl-prolyl cis-trans isomerase [Parascardovia denticolens DSM
           10105]
 gi|294485172|gb|EFG32806.1| peptidylprolyl isomerase PrsA1 [Parascardovia denticolens F0305]
 gi|315120012|gb|EFT83144.1| peptidyl-prolyl cis-trans isomerase [Parascardovia denticolens DSM
           10105]
          Length = 300

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 79/234 (33%), Gaps = 31/234 (13%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             S A + + ++ Y+D Y              +    + +   L      +K  ++S  +
Sbjct: 74  SVSQAQVDKAYKGYQDQYGSGFDSYLSQNNYTKDSFKRSLRTNLLSEVALKKLKKVSPAQ 133

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L   ++            TV+ ++  +Q  A +    L +GK F +LA+      S    
Sbjct: 134 LADAWKDFHP------QVTVQHILVSDQATAQQVIDQLGQGKDFSELAKTYSLDTSSKDE 187

Query: 313 G----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
           G      S     D +  D+ ++L +    T  +    GY +  +  +      +F   K
Sbjct: 188 GGKVTFTSSNRAYDSTFKDAAYALTQGKYTTSPVKVVDGYEVIKM--VSNPSKGTFASRK 245

Query: 369 KDIANQ-----MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           K++        +R +   ++V     + E+       +       K+ +  +  
Sbjct: 246 KELTEAVYAKWLRDSTVMKQVISQVLKNEKVQIQDKDLSNALDSYKVPAATVQT 299


>gi|255036261|ref|YP_003086882.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
           fermentans DSM 18053]
 gi|254949017|gb|ACT93717.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
           fermentans DSM 18053]
          Length = 457

 Score = 70.4 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 101/358 (28%), Gaps = 83/358 (23%)

Query: 8   ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
               W+      +  +   +         VS    +  V    +  S   + + Q     
Sbjct: 2   KVNKWIGAHLAAIFMLLCSVVSFGQGQQGVSLDKIIARVDNHYILSSELEDMYNQYKA-- 59

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
                        R      ++L++L+    L    E   +  +   V GE+     +  
Sbjct: 60  -----------EGRGAPEKCQLLESLIINKMLLAKAEIDSVTVEDKEVDGELNAKMNYMV 108

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
           +  +F  +   + +   G + +       + +    +V                      
Sbjct: 109 Q--RFGSEK--NIVEAYGKSIENLKGELRQQVKEQKIVEKM------------------- 145

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH--EKEKK 245
             R++                + A + ++F     +        + YI  +V      KK
Sbjct: 146 -QRTIS----------GNVKITPADVRKFFNSIPKD-------SLPYIPSEVEVGHIVKK 187

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
             ++ ++ +                         +++  E  Q  +KG+ F  LA+   +
Sbjct: 188 GTVTREQKEKL-----------------------RQQLQELKQRAEKGEDFAMLAQIYSE 224

Query: 306 SLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            L    +G    F+K          +   L K G+ + VI   FG+ +  +   + + 
Sbjct: 225 DLGSAKVGGDLGFAKRGQMVPEFEGAALGL-KPGEMSNVIESQFGFHLIKLIETRGAE 281


>gi|157960692|ref|YP_001500726.1| SurA domain-containing protein [Shewanella pealeana ATCC 700345]
 gi|157845692|gb|ABV86191.1| SurA domain [Shewanella pealeana ATCC 700345]
          Length = 434

 Score = 70.4 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 102/326 (31%), Gaps = 59/326 (18%)

Query: 84  GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
            L  ++++ L+      Q  + IGL     ++   I        K+ K +     +++  
Sbjct: 67  ALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQTIENI----AKEQKITVAQMKAQIES 122

Query: 144 EGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
           EG    +Y +   + ++  ++        ++ S   ++   +   E   +  +     H+
Sbjct: 123 EGTTFAQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKLINEQ-GLKEVEFQIGHI 181

Query: 203 PAIADPSNAVLTQWFEKYK------------DNYR-----------APEYKRISYILFDV 239
                PS+A   Q     K            D++R           A E     Y+  + 
Sbjct: 182 LIDV-PSDANSQQLEAASKRSATVMKRLKDGDDFRSIAIAASSGPKALEGGIWDYMNINE 240

Query: 240 HEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQLVFP-----N 279
                   + + +               +    +    +    +      ++       +
Sbjct: 241 MPTLFAEVVGDAKTGDIIGPIKSASGFHIIKVMDARGLQTKEVQEVKSRHILLKPSPILS 300

Query: 280 QKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFS 331
           ++ A    D     +K G+ KF  LA +  +     + G    ++   I   + +  + S
Sbjct: 301 EERAKSMMDRFLAQVKSGEAKFEDLARQYSEDPGSAAKGGELGWADPNIYVPAFSQELNS 360

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIK 357
           L + G ++     + G+ I  +   +
Sbjct: 361 L-EVGAYSEPFRSTHGWHIVQLEEKR 385



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 98/306 (32%), Gaps = 37/306 (12%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             +L+R  +      G+   +L LDQ                   ++      + A +  
Sbjct: 75  RLILTRLQLQMADRIGLHIGDLQLDQ----------------TIENIAKEQKITVAQMKA 118

Query: 216 WFEKYK---DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
             E        YR    + I+       + +++I++S  E+    +   E+        +
Sbjct: 119 QIESEGTTFAQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKLINEQGLKEVEFQI 178

Query: 273 EQLVFPNQKEAD------------EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
             ++     +A+               + LK G  F  +A         +  G +    I
Sbjct: 179 GHILIDVPSDANSQQLEAASKRSATVMKRLKDGDDFRSIAIAASSGPKALEGGIWDYMNI 238

Query: 321 PD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRIT 378
            +  +L   +   AK GD    I  + G+ I  V + +   T   QEVK   I  +    
Sbjct: 239 NEMPTLFAEVVGDAKTGDIIGPIKSASGFHIIKVMDARGLQTKEVQEVKSRHILLKPSPI 298

Query: 379 KASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
            + E+ K    R    +  G    ++++R+    S D       G+         +P   
Sbjct: 299 LSEERAKSMMDRFLAQVKSGEAKFEDLARQY---SEDPGSAAKGGELGWADPNIYVPAFS 355

Query: 438 QLLFRV 443
           Q L  +
Sbjct: 356 QELNSL 361


>gi|325268743|ref|ZP_08135371.1| peptidyl-prolyl cis-trans isomerase [Prevotella multiformis DSM
           16608]
 gi|324988911|gb|EGC20866.1| peptidyl-prolyl cis-trans isomerase [Prevotella multiformis DSM
           16608]
          Length = 480

 Score = 70.4 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 94/296 (31%), Gaps = 33/296 (11%)

Query: 240 HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEA----------F 287
            +    +++S  E++  + K         P    VE L    + E +E            
Sbjct: 171 EKLVGDVKVSPAEVREYFRKLPVDSIPMIPTTVEVEILTQTPKVEPEEINRIKNQLRDYT 230

Query: 288 QSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             + KG+  F  LA    E+ G +     LG   +  + D + A + F+L      + V+
Sbjct: 231 DRITKGETSFATLARLYSEDPGSARQGGELGYMGRGML-DPTFAAAAFNLTDPKKVSKVV 289

Query: 343 HGSFGYVIAHVSNIKPSFT-------VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
              FGY I  + + +                +    A + R+      ++      E+  
Sbjct: 290 ESEFGYHIIQLIDRRGDKVNCRHILLKPNVSMASIDAAKERLDSIGGDIRNGKFTFEDAT 349

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           A  +   +      ++         +   +K      +P +   +      D+       
Sbjct: 350 AYLSDDKDTKNNHGLMVNSSENARTSRFKMK-----DLPTEVARIVDTLKVDEVSQPFQM 404

Query: 456 VALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
           V  P G  +   V++KE IP     + E    ++      +  + +     + V E
Sbjct: 405 VN-PRGKVVCAIVKLKERIPEHRATITEDFQAMRDIVTAQRRKDILHDWVVKKVKE 459


>gi|328793049|ref|XP_001120560.2| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like, partial [Apis mellifera]
          Length = 127

 Score = 70.4 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSF 315
           ++ K+K  +     V  ++   Q +  EA + LK G KF ++A    +    S   LG  
Sbjct: 22  KEEKKKGNAGNAIKVRHILCEKQSKILEALEKLKAGGKFNEVAAIYSEDKARSGGDLGWM 81

Query: 316 SKEYIPDVSLADSIFSLAKKGDFT-----PVIHGSFGYVIAHVSNIK 357
            K  +      ++ F+L      +     P I   FGY I  V + K
Sbjct: 82  IKGSMVGP-FQEAAFALPISSINSPIYTDPPIKTKFGYHIIMVESKK 127


>gi|15597192|ref|NP_250686.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           PAO1]
 gi|107101424|ref|ZP_01365342.1| hypothetical protein PaerPA_01002464 [Pseudomonas aeruginosa PACS2]
 gi|116049947|ref|YP_791243.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892046|ref|YP_002440913.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           LESB58]
 gi|254235079|ref|ZP_04928402.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           C3719]
 gi|254240433|ref|ZP_04933755.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           2192]
 gi|296389594|ref|ZP_06879069.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           PAb1]
 gi|313111192|ref|ZP_07797014.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           39016]
 gi|9947998|gb|AAG05384.1|AE004626_3 peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           PAO1]
 gi|115585168|gb|ABJ11183.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167010|gb|EAZ52521.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           C3719]
 gi|126193811|gb|EAZ57874.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           2192]
 gi|218772272|emb|CAW28054.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           LESB58]
 gi|310883516|gb|EFQ42110.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           39016]
          Length = 92

 Score = 70.4 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++   + EA +  Q L KG+ F  LA++     S      LG      +   S+ ++
Sbjct: 6   ARHILVKTEAEAAQLKQRLAKGEDFATLAKKHSTCPSGKRGGDLGEVRPGQMV-RSIDNA 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHV 353
           IF     G     +   FGY +  V
Sbjct: 65  IFR-KPVGVLQGPLKSQFGYHLLEV 88


>gi|23097538|ref|NP_691004.1| protein secretion protein [Oceanobacillus iheyensis HTE831]
 gi|22775761|dbj|BAC12039.1| protein secretion (post-translocation molecular chaperone)
           [Oceanobacillus iheyensis HTE831]
          Length = 303

 Score = 70.4 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 6/151 (3%)

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           I Y         K IEI  +EL++ Y+    +Y       +  ++  + + A++ +Q L+
Sbjct: 129 IKYRYQLEQLLTKNIEIPEEELRSYYDTYGNQYDFSSSVKLSHILVEDMETAEQVYQELE 188

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL-----ADSIFSLAKKGDFTPVIHGSF 346
            G  F  LA E          G +                    ++     ++       
Sbjct: 189 DGASFRLLAREYSIDDETRQNGGYMGSIYTSSQFLLDSYETQAANMENH-TYSEPFQAEN 247

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
           G  I ++    P+   ++ EV+  + +++ +
Sbjct: 248 GVAIMYLHRKLPAIKFTYDEVQPYVHSEVAM 278


>gi|15924831|ref|NP_372365.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927415|ref|NP_374948.1| hypothetical protein SA1659 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283511|ref|NP_646599.1| hypothetical protein MW1782 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486658|ref|YP_043879.1| putative peptidyl-prolyl cis-isomerase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57650630|ref|YP_186723.1| protein export protein PrsA, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87162356|ref|YP_494473.1| foldase protein PrsA precursor [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195663|ref|YP_500469.1| protein export protein PrsA [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150394374|ref|YP_001317049.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151221945|ref|YP_001332767.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156980157|ref|YP_001442416.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|161510056|ref|YP_001575715.1| peptidylprolyl isomerase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142176|ref|ZP_03566669.1| peptidylprolyl isomerase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315172|ref|ZP_04838385.1| foldase protein PrsA precursor [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253732497|ref|ZP_04866662.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|255006629|ref|ZP_05145230.2| foldase protein PrsA precursor [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793800|ref|ZP_05642779.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A9781]
 gi|258413737|ref|ZP_05682010.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A9763]
 gi|258420756|ref|ZP_05683695.1| foldase prsA [Staphylococcus aureus A9719]
 gi|258438417|ref|ZP_05689701.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus A9299]
 gi|258443862|ref|ZP_05692201.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A8115]
 gi|258447317|ref|ZP_05695464.1| peptidylprolyl isomerase [Staphylococcus aureus A6300]
 gi|258448200|ref|ZP_05696327.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus A6224]
 gi|258452669|ref|ZP_05700668.1| foldase prsA [Staphylococcus aureus A5948]
 gi|258453367|ref|ZP_05701350.1| foldase prsA [Staphylococcus aureus A5937]
 gi|262052668|ref|ZP_06024860.1| hypothetical protein SA930_0804 [Staphylococcus aureus 930918-3]
 gi|269203478|ref|YP_003282747.1| protein export protein PrsA, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895139|ref|ZP_06303358.1| foldase prsA [Staphylococcus aureus A8117]
 gi|282924172|ref|ZP_06331847.1| foldase prsA [Staphylococcus aureus A9765]
 gi|282928579|ref|ZP_06336178.1| foldase prsA [Staphylococcus aureus A10102]
 gi|284024887|ref|ZP_06379285.1| protein export protein PrsA, putative [Staphylococcus aureus subsp.
           aureus 132]
 gi|294850269|ref|ZP_06791004.1| foldase prsA [Staphylococcus aureus A9754]
 gi|295406147|ref|ZP_06815955.1| foldase prsA [Staphylococcus aureus A8819]
 gi|296276027|ref|ZP_06858534.1| protein export protein PrsA, putative [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207443|ref|ZP_06923880.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297244929|ref|ZP_06928806.1| foldase prsA [Staphylococcus aureus A8796]
 gi|300911528|ref|ZP_07128973.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304380557|ref|ZP_07363232.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|46396696|sp|P60747|PRSA_STAAM RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|46396697|sp|P60748|PRSA_STAAN RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|46396698|sp|P60749|PRSA_STAAW RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|56749190|sp|Q6G894|PRSA_STAAS RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|81694206|sp|Q5HET4|PRSA_STAAC RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|122540695|sp|Q2G2S6|PRSA_STAA8 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|123485269|sp|Q2FFQ5|PRSA_STAA3 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|189037914|sp|A7X3U8|PRSA_STAA1 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|189037915|sp|A6U2U4|PRSA_STAA2 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|189037916|sp|A6QI23|PRSA_STAAE RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|189037917|sp|A8YY10|PRSA_STAAT RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|13701634|dbj|BAB42927.1| prsA [Staphylococcus aureus subsp. aureus N315]
 gi|14247613|dbj|BAB58003.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21204952|dbj|BAB95647.1| prsA [Staphylococcus aureus subsp. aureus MW2]
 gi|49245101|emb|CAG43567.1| putative peptidyl-prolyl cis-isomerase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57284816|gb|AAW36910.1| protein export protein PrsA, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87128330|gb|ABD22844.1| foldase protein PrsA precursor [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203221|gb|ABD31031.1| protein export protein PrsA, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|149946826|gb|ABR52762.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Staphylococcus
           aureus subsp. aureus JH1]
 gi|150374745|dbj|BAF68005.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156722292|dbj|BAF78709.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160368865|gb|ABX29836.1| peptidylprolyl isomerase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723778|gb|EES92507.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|257787772|gb|EEV26112.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A9781]
 gi|257839524|gb|EEV63995.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A9763]
 gi|257843360|gb|EEV67770.1| foldase prsA [Staphylococcus aureus A9719]
 gi|257848461|gb|EEV72452.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus A9299]
 gi|257851268|gb|EEV75211.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A8115]
 gi|257853904|gb|EEV76860.1| peptidylprolyl isomerase [Staphylococcus aureus A6300]
 gi|257858439|gb|EEV81315.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus A6224]
 gi|257859644|gb|EEV82493.1| foldase prsA [Staphylococcus aureus A5948]
 gi|257864459|gb|EEV87204.1| foldase prsA [Staphylococcus aureus A5937]
 gi|259159417|gb|EEW44469.1| hypothetical protein SA930_0804 [Staphylococcus aureus 930918-3]
 gi|262075768|gb|ACY11741.1| protein export protein PrsA, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941312|emb|CBI49709.1| putative peptidyl-prolyl cis-isomerase [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282589788|gb|EFB94873.1| foldase prsA [Staphylococcus aureus A10102]
 gi|282592967|gb|EFB97969.1| foldase prsA [Staphylococcus aureus A9765]
 gi|282762483|gb|EFC02624.1| foldase prsA [Staphylococcus aureus A8117]
 gi|285817521|gb|ADC38008.1| Foldase protein PrsA precursor [Staphylococcus aureus 04-02981]
 gi|294822885|gb|EFG39319.1| foldase prsA [Staphylococcus aureus A9754]
 gi|294969144|gb|EFG45165.1| foldase prsA [Staphylococcus aureus A8819]
 gi|296887906|gb|EFH26802.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297178009|gb|EFH37257.1| foldase prsA [Staphylococcus aureus A8796]
 gi|300887160|gb|EFK82360.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302751650|gb|ADL65827.1| peptidylprolyl isomerase, PrsA [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340886|gb|EFM06811.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312830213|emb|CBX35055.1| PPIC-type PPIASE domain protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315130515|gb|EFT86501.1| peptidylprolyl isomerase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315196811|gb|EFU27155.1| peptidylprolyl isomerase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320141309|gb|EFW33154.1| PPIC-type PPIASE domain protein [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143563|gb|EFW35343.1| PPIC-type PPIASE domain protein [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329727671|gb|EGG64127.1| putative foldase protein PrsA [Staphylococcus aureus subsp. aureus
           21172]
 gi|329729514|gb|EGG65916.1| PPIC-type PPIASE domain protein [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329732962|gb|EGG69306.1| PPIC-type PPIASE domain protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 320

 Score = 70.4 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 47/198 (23%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +KYK+N R   Y +             KI+IS+ E++             + +    ++ 
Sbjct: 110 DKYKENLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 149

Query: 278 P-----------NQKEADEAFQSLKK-----GKKFIQLAEEQ----GKSLSDISLGSFSK 317
                       + KEA +  + ++K       KF ++A+++    G +  D  LG   K
Sbjct: 150 KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLK 209

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
               D     ++F L K G+ + V+  SFGY I             F   K+ +  ++  
Sbjct: 210 GQT-DKDFEKALFKL-KDGEVSEVVKSSFGYHIIK-----ADKPTDFNSEKQSLKEKLVD 262

Query: 378 TKASEKVKEDYKRLEEFL 395
            K  +  K      ++ L
Sbjct: 263 QKVQKNPKLLTDAYKDLL 280


>gi|212711199|ref|ZP_03319327.1| hypothetical protein PROVALCAL_02271 [Providencia alcalifaciens DSM
           30120]
 gi|212686367|gb|EEB45895.1| hypothetical protein PROVALCAL_02271 [Providencia alcalifaciens DSM
           30120]
          Length = 451

 Score = 70.4 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 69/447 (15%), Positives = 131/447 (29%), Gaps = 87/447 (19%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
              N +      L ++I+D LV    + Q    + +      V   IA       + N  
Sbjct: 65  RNANQQVPDDQTLRQQIIDRLVMDNIMLQMANQMQINIPEEAVNTTIADI----ARQNNL 120

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           +      RL  +GIN  +Y     K +   +V                        N   
Sbjct: 121 TLPQMEKRLTADGINIAKYRSEIRKEMLLAEVRN----------------------NEVR 158

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
             I +  + V A+AD  ++ +              +   +S+IL  + E           
Sbjct: 159 RRITILPQEVDALADQMDSQMNA-----------QKGVNLSHILIPLPENP--------- 198

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
                        +PE       +   +   D+    LKKG  F +LA         +  
Sbjct: 199 -------------TPEQ------LAKAESLVDKILSDLKKGSDFGKLAIAYSADPQALKG 239

Query: 313 GSFSKEYIPDVS--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ--EVK 368
           G+     + ++    +D + + AKKGD    I    G+ I  V+ +           EVK
Sbjct: 240 GNMGWSRLQELPVVFSDELKN-AKKGDIVGPIRSGVGFHILRVNEVSGDTHQPISVTEVK 298

Query: 369 KD---IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE-KIVSIDLPLVDFAGKD 424
                + +   +  A+ + ++  +  +E      S +E ++   +     L   +     
Sbjct: 299 ARHILLKSSPIMDDATAR-QKLTQLAQEIRNGRISFEEAAKENSEDPGSALKGGELGWNM 357

Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDRKLEEVL 483
               + A      +L      +  P S   H + L D   +           D+      
Sbjct: 358 PDVYDPAFRDALMKLKKGEISQPVPSSFGWHLIQLEDTRSV-----------DKTDAAKK 406

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEY 510
               +     K  EE  +   +     
Sbjct: 407 DQAYRLLFNRKFNEEAQTWMQEQRAAA 433


>gi|189499014|ref|YP_001958484.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides BS1]
 gi|189494455|gb|ACE03003.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides BS1]
          Length = 440

 Score = 70.4 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 59/426 (13%), Positives = 138/426 (32%), Gaps = 34/426 (7%)

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
           +  G      R+   +    +   + ++       + +AR    E +        +    
Sbjct: 23  QRAGAAVAD-RIVAVVGNEMIMQSQVDE------QAMMARLQYTEAKNDPSLKAGILENL 75

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           V    V  +  + +   Q      E R+ + +        +I +  +     +     + 
Sbjct: 76  VTRKIV--LTKARIDSIQVDESDIEKRTDERMRFLRSKFSSIEEMESTFSKSY--AVIEK 131

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVF----- 277
               + +    I     +K   + ++ +E++  Y  N++K    PE   V Q+V      
Sbjct: 132 EIKDDIRDQQLINNLRRQKMMGVNVTYEEVEDFYGANRDKLPVVPEAVEVSQVVMYPKVT 191

Query: 278 -----PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSI 329
                  +   +   Q L+ G+ F  LA E  +      LG    +S+      +     
Sbjct: 192 AEAKAKARAAIEAMQQRLRSGENFAALAREYSQDPGSARLGGDLGYSRRGEFVKNYEKVA 251

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           F L ++G+ + ++   FGY I  + + +     +   +     + +    A   ++    
Sbjct: 252 FGL-EEGEISGIVETRFGYHIIQLLDKEQDAVHTRHILIVFDRSTLDAPAAKAALEMIRS 310

Query: 390 RLEEFLALGTSMDEISRREKIVSIDLP---LVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
              + ++  +   E++R      +      ++           V+++  + + + R F K
Sbjct: 311 ---DIISGKSDFAEMAREYSDDPVSSKYGGVIRNTETGETRFAVSSLRDQLKTVVRSFKK 367

Query: 447 DDPLSKDHTVALPDGS--YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
              +S    VA   G+  Y   ++    PA    L      ++K     K         N
Sbjct: 368 VGDISSVVRVAPESGAPFYAIFKLNSREPAHKLDLSSDYARLEKLAIDEKQNRLFQEWIN 427

Query: 505 QLVLEY 510
           +L  E 
Sbjct: 428 ELQKEV 433



 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 56/447 (12%), Positives = 121/447 (27%), Gaps = 86/447 (19%)

Query: 17  FLVVLFVPFLIWGLS-DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           FL ++ V F++         +      V  VG + +  S                +  + 
Sbjct: 7   FLRLVAVVFIMVAAGFQRAGAAVADRIVAVVGNEMIMQSQVDE---------QAMMARLQ 57

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
            +E      L   IL+NLV+   +        ++ D   +            +  +F   
Sbjct: 58  YTEAKNDPSLKAGILENLVTRKIVLTKARIDSIQVDESDIEKRT-------DERMRFLRS 110

Query: 136 VFVSRLAREGINEKEY---IDHYTKMLSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRS 191
            F S    E    K Y          +    ++       M   N+  ++ + FY  NR 
Sbjct: 111 KFSSIEEMESTFSKSYAVIEKEIKDDIRDQQLINNLRRQKMMGVNVTYEEVEDFYGANRD 170

Query: 192 VDYIVLNNRHVPAIA---DPSN-----------------------AVLTQWFEKYKDN-- 223
              +V     V  +      +                        A L + + +   +  
Sbjct: 171 KLPVVPEAVEVSQVVMYPKVTAEAKAKARAAIEAMQQRLRSGENFAALAREYSQDPGSAR 230

Query: 224 ------YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE--QL 275
                 Y        +Y       +E +I      ++  +  +  +    E   V    +
Sbjct: 231 LGGDLGYSRRGEFVKNYEKVAFGLEEGEIS---GIVETRFGYHIIQLLDKEQDAVHTRHI 287

Query: 276 VFP------NQKEADEAFQSLKKG-----KKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
           +        +   A  A + ++         F ++A E          G   +      +
Sbjct: 288 LIVFDRSTLDAPAAKAALEMIRSDIISGKSDFAEMAREYSDDPVSSKYGGVIRNTETGET 347

Query: 325 ----------LADSIFSLAKKGDFT-----PVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
                     L   + S  K GD +         G+  Y I  +++ +P+  +       
Sbjct: 348 RFAVSSLRDQLKTVVRSFKKVGDISSVVRVAPESGAPFYAIFKLNSREPAHKLDLSSDYA 407

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLA 396
            +       K +   +E    L++ + 
Sbjct: 408 RLEKLAIDEKQNRLFQEWINELQKEVY 434


>gi|223997298|ref|XP_002288322.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975430|gb|EED93758.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 120

 Score = 70.4 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++ P  ++A++    L +   F  LA E     S     SLGSF    +      D
Sbjct: 26  TARHILVPTIEDANDILGKLAEN-SFTSLASEYSTCPSKARGGSLGSFGPGTMVK-EFDD 83

Query: 328 SIFS-LAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            IFS   K G+    +   FGY +  V      
Sbjct: 84  VIFSPETKMGEVVGPVKTQFGYHLIVVDKRTGG 116


>gi|152972767|ref|YP_001337913.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206579081|ref|YP_002241160.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae 342]
 gi|238892378|ref|YP_002917112.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040912|ref|ZP_06014138.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288937798|ref|YP_003441857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
           At-22]
 gi|330012128|ref|ZP_08307290.1| peptidyl-prolyl cis-trans isomerase [Klebsiella sp. MS 92-3]
 gi|150957616|gb|ABR79646.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206568139|gb|ACI09915.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae 342]
 gi|238544694|dbj|BAH61045.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041801|gb|EEW42846.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288892507|gb|ADC60825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
           At-22]
 gi|328533943|gb|EGF60602.1| peptidyl-prolyl cis-trans isomerase [Klebsiella sp. MS 92-3]
          Length = 93

 Score = 70.4 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + LK G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQLKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           S  +  + T  +H  FGY I  V   K
Sbjct: 68  SCPEL-EPTGPLHTQFGYHIIKVLYRK 93


>gi|291407685|ref|XP_002720151.1| PREDICTED: protein (peptidyl-prolyl cis/trans isomerase)
           NIMA-interacting, 4 (parvulin)-like [Oryctolagus
           cuniculus]
          Length = 131

 Score = 70.4 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G KF ++A +  +  +     LG  ++  +      ++
Sbjct: 39  KVRHILCEKHGKIMEAMEKLKSGMKFSEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 97

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 98  AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131


>gi|262164102|ref|ZP_06031841.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus VM223]
 gi|262027630|gb|EEY46296.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus VM223]
          Length = 388

 Score = 70.4 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 116/343 (33%), Gaps = 85/343 (24%)

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
           N    +   L +++L+ L+      Q  E IG++ D  R+   I        K N+ + +
Sbjct: 16  NQPLPQETVLREQVLEKLIIDTLQQQEAERIGVKIDDNRLNDAIKEI----AKSNQQTQE 71

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
             +S +A+EG+   E+         R  V          + L+  +      E  ++  +
Sbjct: 72  QLISSVAQEGLTYPEF---------REQVRKEMAASDARNALVRRRINILPAEVDTLAEL 122

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
           +         A  ++A +                 +IS+I   V E + K E        
Sbjct: 123 L---------AQETDATVQ---------------YKISHIQLRVEEGQDKSE-------- 150

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISL 312
                                   +  A++    LK G  F Q+A    K   +L     
Sbjct: 151 -----------------------AESLANKLVGELKHGADFAQMAYTYSKGPKALQGGDW 187

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV----- 367
           G   KE +P    AD I  +  KG          G+ I  + ++K   TV+  EV     
Sbjct: 188 GWMRKEEMP-TIFADQI-KMQNKGSVIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHI 245

Query: 368 --KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
             K  I   +    A +++ E  +R++       +  E++++ 
Sbjct: 246 LIKPTII--LSDEGAQKQLNEFVQRIKN---GEATFGELAQQY 283


>gi|304405852|ref|ZP_07387510.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345095|gb|EFM10931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
          Length = 364

 Score = 70.4 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 62/163 (38%), Gaps = 23/163 (14%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ---------------KEADEAFQS 289
           +  + + +++A Y+K    + +    TV  ++   +               K+A E  Q 
Sbjct: 163 EQNVKDADMKAIYDKAPSDFNN---ITVRHILIGFKDPSTGKEKLSKADALKKAQEVKQK 219

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFG 347
           L+ G  +  LA++          G   +   P V +       +  + G     +   +G
Sbjct: 220 LEAGGDWAALAKQYSDDEGSKDKGGLYENQEPRVWVEAFKKAANTQEIGKIGDPVETEYG 279

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           Y +  V   +   T ++++V +   +++R + ++  + +   +
Sbjct: 280 YHVMKVEKRE---TRTWEQVPQATKDELRKSASTTVLNDFMTK 319


>gi|323529999|ref|YP_004232151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
 gi|323387001|gb|ADX59091.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
          Length = 308

 Score = 70.4 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 69/186 (37%), Gaps = 16/186 (8%)

Query: 214 TQWFEKYKDNYRAPEY-KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
            Q +E       A E  + ++     + ++ K   +++ +++A+Y+         E +  
Sbjct: 111 KQHYESRPQVVAAVEQARTVAMTAAYLRDQVKPAPVTDADVKAKYDAIVATLGEFEYKPS 170

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDV------ 323
             +   +   A      LKKG  F QLA++      +    +L   S             
Sbjct: 171 A-IAVKDADTAQTVLTQLKKGTDFAQLAKQYSQGPGAAQGGALNWISFRTPIQPGNTQNW 229

Query: 324 --SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM---RIT 378
              LA+++  L + G  +  +     + I  V   + +    + ++K  +  Q+    + 
Sbjct: 230 PQPLAEALVKLPQGGVSSAPVQVGDAFWILRVDEKRATQIPQYDQIKDTLRKQLEQVALQ 289

Query: 379 KASEKV 384
           KA+ +V
Sbjct: 290 KATAQV 295



 Score = 38.0 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 66/244 (27%), Gaps = 21/244 (8%)

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
               G  + +    + + + ++P        +K + +A   +++    + +     +   
Sbjct: 64  ARVNGVVITQAQLDDAVRASNVPDTPALRASIKNQLIARELFRQAAEKQHYESRPQVVAA 123

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVL---TDVKKDWKTVK----TAEEVSSKANQL 506
              A            +  PA      +V      +       +          +   Q 
Sbjct: 124 VEQARTVAMTAAYLRDQVKPA-PVTDADVKAKYDAIVATLGEFEYKPSAIAVKDADTAQT 182

Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQIN---------RMDNENKFFGYDGISQVFSGPV 557
           VL   K+G +F  + K                            + +       +   P 
Sbjct: 183 VLTQLKKGTDFAQLAKQYSQGPGAAQGGALNWISFRTPIQPGNTQNWPQPLAEALVKLPQ 242

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQ 613
             V   P++ G ++ + +V   +   + +    KD     L Q+  +     V+  L   
Sbjct: 243 GGVSSAPVQVGDAFWILRVDEKRATQIPQYDQIKDTLRKQLEQVALQKATAQVVVDLMKN 302

Query: 614 YSVT 617
             + 
Sbjct: 303 AKIQ 306


>gi|237508659|ref|ZP_04521374.1| ppic-type ppiase domain protein [Burkholderia pseudomallei MSHR346]
 gi|235000864|gb|EEP50288.1| ppic-type ppiase domain protein [Burkholderia pseudomallei MSHR346]
          Length = 265

 Score = 70.4 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 18/172 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQS-LKKGKKF 296
           E + D  +  Y  +  ++   +I     ++F           ++EA+      L + + F
Sbjct: 89  EPTRDACERYYLNHAARFRRRDIVYASHILFAVTDGTPLAPLRREAEATLARVLAEPQTF 148

Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
              A E      +    SLG   +          ++F     G    +++  FG+ I  +
Sbjct: 149 EARARELSNCPSAQVGGSLGQLLRGDSV-PEFDAAVFDTTDSGVLPRLVNTRFGFHIVRI 207

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
               P   V F  V  +IA  +    A     +  ++    LA G  ++ ++
Sbjct: 208 ERRVPGDPVPFDAVAAEIAAFL----AERVRHKAIQQYVTILASGARIEGVA 255


>gi|222833212|gb|EEE71689.1| predicted protein [Populus trichocarpa]
          Length = 386

 Score = 70.4 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 58/453 (12%), Positives = 127/453 (28%), Gaps = 91/453 (20%)

Query: 63  ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
            +     + G  +  E      L +++L+ L+      Q  +D GL  D   V   +   
Sbjct: 3   RVAQNIAEQGGQMPPEAL----LAREVLERLIVEKAQLQEAKDTGLRVDDYAVDQALTNV 58

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
                + N        SRL  EG+NEK++ +   + ++   +                  
Sbjct: 59  ----ARQNGLDKAGLQSRLRAEGVNEKQFREELRRQITLQRLRE---------------- 98

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--RAPEYKRISYILFDVH 240
                            R V      ++A + ++  + +     +AP    + +IL  V 
Sbjct: 99  -----------------RDVDGRVRVTDADIDRYLAEQRSGGADKAPAAVNLGHILISVP 141

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           E     E++           + +          Q                     F+ + 
Sbjct: 142 ENASPAEVAE---------REARAKQAAEAARTQ-------------------GDFLAVV 173

Query: 301 EEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           +E          G+   +       L         +G          G+ +  V     +
Sbjct: 174 KEFSDVPDGQGGGAMGMRPLDRYPELFTKAVGQTAQGGIVGPFRSGAGFHVLKVLEKSQA 233

Query: 360 FTVSFQE------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
              S         +   I +QM    A++++ +  +R++   +   S + ++R       
Sbjct: 234 GMPSVVTQNHARHILLRIGDQMTEADAAKRLADYKRRVD---SGQASFESLAREFSQDG- 289

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
                   G          +P  EQ+L  +        +     +       +Q+ E   
Sbjct: 290 ---SARNGGDLGWASPGQFVPEFEQVLNAL-----QPGQVSDPLVSRFGVHLIQLIERRQ 341

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
           A     E+    V+   +  K   +  +   +L
Sbjct: 342 AALTPREQ-RDMVRNVVRERKLETDYQTWLQEL 373


>gi|262378424|ref|ZP_06071581.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SH164]
 gi|262299709|gb|EEY87621.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SH164]
          Length = 441

 Score = 70.4 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 50/393 (12%), Positives = 115/393 (29%), Gaps = 64/393 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S  I    +    +  +   V          L+K+ LD L+     
Sbjct: 36  DEVVAIVDNGVILKSDLIQGVAELKHQLETQKREVPP-----QAFLEKQALDQLILRQAQ 90

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI---DHYT 156
            + +    ++ D   +   + +      +    + + F  +L    +    Y    +   
Sbjct: 91  LEQVRRYNVKPDEKSLNEAVMKVA---SQSGTKTLEAFQQKLDA--MAPGTYESLRNRIA 145

Query: 157 KMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPAIADPS 209
           + L+   +     +  ++ S+  ++      Q +        V +  +  +        S
Sbjct: 146 EDLAINRLRQQQVMSRIKISDQDVENFLKSPQGQAALGSQVHVIHARITPKDKQTANVES 205

Query: 210 NAV--------------LTQWFEKYKDN-------YRA----PEYKRISYILFDVHEKEK 244
            A               +++ +   K         +R+    P           V +  +
Sbjct: 206 VAQQVKNALNTSNDIQAISKQYSDTKVQVEGVDMGFRSLADIPAELAARVSALPVGQTTE 265

Query: 245 KIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
            I   +    L+    K  E+           ++            +   D  +  LK G
Sbjct: 266 LIPARDGVHVLKVLERKTSEQKALVPQYQTRHILIQPSEVVSPENAKHMIDNIYNRLKAG 325

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F  LA     + G +    SLG  S   +      + + S    G  +      FG+ 
Sbjct: 326 EDFTVLASTFSTDTGSARDGGSLGWVSPGVMV-PEFEEKMKS-TPVGQVSAPFQTQFGWH 383

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           I  V++ +       +E ++ +A Q+   +  E
Sbjct: 384 ILQVTDTRQQDMT--EEYQERMARQILGERQFE 414


>gi|284035738|ref|YP_003385668.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
 gi|283815031|gb|ADB36869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
          Length = 458

 Score = 70.4 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 86/244 (35%), Gaps = 32/244 (13%)

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           + + S + +     ++     + ++++  +    +  +   + ++D       +      
Sbjct: 49  EAYQSYVGQNQTPPQKCQLLESLVINKMMLAKAEIDSVVVDDKIVDSELDSRMQ------ 102

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK---KIEISND 251
                         S+  + + + K  +  ++    ++         ++K    ++++  
Sbjct: 103 -------YMVQQFGSDKNIVEAYGKSLEMLKSELRSQVKDQKVVQKMQQKITTDVKVTPR 155

Query: 252 ELQAEYE---KNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSL-------KKGKKFIQL 299
           +++  Y+   K+   Y   E+   + + F  P +++ +   Q L       + G+ F +L
Sbjct: 156 DVRRFYDGIPKDSLPYIPAEVEVGQIVRFAKPTKEQKEVLRQRLLDMKKRVEAGEDFAKL 215

Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A+E  + +     G    F+K  +       +   L K    + V+   FG  +  +   
Sbjct: 216 AKENSEDVGSAQNGGDLGFAKRGMMVAPFEGAALKL-KPNQLSDVVESDFGLHLIQLIET 274

Query: 357 KPSF 360
           + + 
Sbjct: 275 RGAE 278


>gi|126666859|ref|ZP_01737835.1| peptidyl-prolyl cis-trans isomerase C2 [Marinobacter sp. ELB17]
 gi|126628575|gb|EAZ99196.1| peptidyl-prolyl cis-trans isomerase C2 [Marinobacter sp. ELB17]
          Length = 92

 Score = 70.4 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++   + + +E  + ++ G+ F ++A++     S      LGSF    +    
Sbjct: 2   AQATARHILVDTEAKCEELKKDIEGGQDFAEVAKKHSSCPSGGNGGDLGSFGPGQMV-PE 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
               +FS A        +   FGY +  V++ 
Sbjct: 61  FDTVVFS-ADLNTVQGPVKTQFGYHLLEVTSR 91


>gi|323343303|ref|ZP_08083530.1| peptidyl-prolyl cis-trans isomerase [Prevotella oralis ATCC 33269]
 gi|323095122|gb|EFZ37696.1| peptidyl-prolyl cis-trans isomerase [Prevotella oralis ATCC 33269]
          Length = 478

 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 76/218 (34%), Gaps = 26/218 (11%)

Query: 209 SNAVLTQWFEKYKDNYRAP---EYKRISYILFDVHEKEKKIEISNDELQAEYEK--NKEK 263
           S   L +W  +     R     EYK    +     E  K ++++  +++  +        
Sbjct: 133 SREKLEEWRNQTIAQMRQQMHDEYKNTQLVQKMRQELVKDVKVTPADVRNYFRNLPEDSI 192

Query: 264 YFSPEIRTVEQLVFP---NQKEADEAFQSLK-------KGKK-FIQLA----EEQGKSLS 308
            F P    VE +       Q+E +     L+       KG+  F  LA    E+ G +  
Sbjct: 193 PFVPTEVEVEIITKQPKITQEEVNRVKDELRGFTDRVMKGETTFATLARLYSEDPGTARQ 252

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
              LG   +  + D + A   F+L      + ++   FGY I  + + +         V+
Sbjct: 253 GGELGYTGRGML-DPAFASVAFNLTDPKKISKIVETEFGYHIIQLIDKRGDKV----NVR 307

Query: 369 KDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEIS 405
             +   +   +   K K     + ++  A   + +E +
Sbjct: 308 HILLKPVVSAEEIGKTKARLDSIADDIRADKMTFEEAA 345


>gi|308050216|ref|YP_003913782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica
           DSM 9799]
 gi|307632406|gb|ADN76708.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica
           DSM 9799]
          Length = 93

 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIF 330
            ++  ++ +A E  Q L+KG  F  LA++     S      LG F K  +   +   ++F
Sbjct: 9   HILVKHEAKAQELLQQLEKGANFQTLAKKHSTCPSGKKGGHLGEFRKGDMV-PTFDKAVF 67

Query: 331 SLAKKGDF---TPVIHGSFGYVIAHV 353
                G        +   FG+ I  V
Sbjct: 68  ----TGPILKPIGPVKTKFGFHIIKV 89


>gi|302877391|ref|YP_003845955.1| SurA domain [Gallionella capsiferriformans ES-2]
 gi|302580180|gb|ADL54191.1| SurA domain [Gallionella capsiferriformans ES-2]
          Length = 440

 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 122/367 (33%), Gaps = 84/367 (22%)

Query: 51  VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
           +         +  +  + ++      +       L+ ++L+ +++     QF ++ G+  
Sbjct: 49  ITRLELNERLRMVVSQLKKQ-----GTPLPEGAVLETQVLERMIAEMLQAQFAKENGVRV 103

Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
           D  ++   I R      ++N  S   F+++L  +G+N K++ +     +  T +      
Sbjct: 104 DDTQLDMAITRIAQ---QNNFPSLVEFMAKLESDGVNVKKFREEIRAEIVSTRLRE---- 156

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF-EKYKDNYRAPEY 229
                                        R V +    S+  +  +   K K      EY
Sbjct: 157 -----------------------------REVESKLVISDTEVDNYLSNKSKMGLDNDEY 187

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
                ++          + S ++++A                        ++ AD+AF  
Sbjct: 188 HLAHILVVVPE------QASAEKIRA-----------------------ARERADQAFAQ 218

Query: 290 LKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           L  G  F Q++    +   +L    LG  + + IP  +  + + +L K G  T V+    
Sbjct: 219 LSGGADFSQVSAGFSDAKDALKGGDLGWRAGDRIP-PAFMNELQNL-KPGQNTAVLRSPS 276

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR-----LEEFLALGTSM 401
           G+ I  +   +         V      +  + K SE V E   +     +++ +  G   
Sbjct: 277 GFHILKLVEKRGGSAPV---VITQTHARHILIKTSEIVTEAEAKKQLLEIKQRIDGGAGF 333

Query: 402 DEISRRE 408
            E ++R 
Sbjct: 334 AEQAKRY 340



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 16/147 (10%)

Query: 269 IRTVEQLVFPN-----QKEAD----EAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFS 316
                 ++        + EA     E  Q +  G  F + A+   + G +     L   S
Sbjct: 297 QTHARHILIKTSEIVTEAEAKKQLLEIKQRIDGGAGFAEQAKRYSQDGSAQQGGDLDWLS 356

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
                      +I  L + G    ++   FG+ +  V   + +   S Q+ ++     + 
Sbjct: 357 PGQTV-PEFEGAINKL-QVGQM-GMVQTQFGWHLIQVLARRNTDV-SEQQKRQQARVSIG 412

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDE 403
             K+ E  ++  ++L +   +   ++E
Sbjct: 413 TFKSEELYQDWLRQLRDRAFVEYRLEE 439


>gi|116696205|ref|YP_841781.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
 gi|113530704|emb|CAJ97051.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
          Length = 250

 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 13/157 (8%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLK----KGKKF 296
           E      +  Y+   E++   E    + ++F      P     + A Q+L         F
Sbjct: 74  EPDEASCRRHYDSRPERFRDGEWVEADHILFQVTPRVPLDALREIAAQTLALVRGDPSTF 133

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            + A       S  + G   + +  +       ++F+  + G    ++   +G  I  V 
Sbjct: 134 PEHARALSNCPSGANGGRLGRVFRGETAPEFERALFAAQQDGVLPHLLETRYGLHIVRVL 193

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              P   + F  V+ DIA  +    A ++  + Y  L
Sbjct: 194 ERCPGTRLPFDAVRGDIARALASA-ARDRAWKQYASL 229


>gi|261823433|ref|YP_003261539.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           wasabiae WPP163]
 gi|261607446|gb|ACX89932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           wasabiae WPP163]
          Length = 93

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   ++ A +    L+KG  F +LA++     S      LG F K  +   +   ++F
Sbjct: 9   HILVDTEQLASDILAQLEKGADFQKLAQKHSTCPSKRNGGDLGEFRKGDMV-PAFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L K       +   FGY +  V
Sbjct: 68  SCELLKP---FGPVKTQFGYHVIKV 89


>gi|301021433|ref|ZP_07185457.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
 gi|300398069|gb|EFJ81607.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
          Length = 93

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A E    +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALELLDQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 68  SCPVL-EPTGPLHTQFGYHIIKV 89


>gi|300714778|ref|YP_003739581.1| peptidyl-prolyl cis-trans isomerase C [Erwinia billingiae Eb661]
 gi|299060614|emb|CAX57721.1| Peptidyl-prolyl cis-trans isomerase C [Erwinia billingiae Eb661]
          Length = 93

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIF 330
            ++   +K A +    L+KG  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLAQDILAELEKGADFEKLAKKHSTCPSGKKGGHLGEFKQGAMV-PAFDKVVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L         +H  FGY I  V
Sbjct: 68  SCPLIVP---YGPLHTQFGYHIIKV 89


>gi|239637879|ref|ZP_04678840.1| foldase protein PrsA [Staphylococcus warneri L37603]
 gi|239596442|gb|EEQ78978.1| foldase protein PrsA [Staphylococcus warneri L37603]
          Length = 330

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 76/203 (37%), Gaps = 42/203 (20%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----------NQKEADEAFQ 288
                KI++S+ E++               +    ++             + K+A +  +
Sbjct: 124 ELLNDKIKVSDKEIKDN------------TKKASHILIKVKSKDSDKEGLSDKKAKQKAE 171

Query: 289 SLKK-----GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
            ++K       KF ++A+    ++  +  D SLG  +K  + + S   ++F L K+G+ T
Sbjct: 172 EIQKEVSKDPSKFGEIAKKESMDKSTAKKDGSLGYVTKGQMME-SFDKALFKL-KEGEVT 229

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS---EKVKEDYKRLEEFLA 396
            V+   +GY I             F   K ++ +++   K     + + + YK + +   
Sbjct: 230 KVVKTDYGYHIIK-----ADKETDFNSEKSNLKSKILEQKIQKDPKLLTDAYKEILDEYK 284

Query: 397 LGTSMDEISRREKIVSIDLPLVD 419
           +     +I +      +D   + 
Sbjct: 285 VDYKDRDIKKAVDDTILDPDKIK 307


>gi|331701588|ref|YP_004398547.1| Foldase protein prsA [Lactobacillus buchneri NRRL B-30929]
 gi|329128931|gb|AEB73484.1| Foldase protein prsA [Lactobacillus buchneri NRRL B-30929]
          Length = 298

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 86/231 (37%), Gaps = 44/231 (19%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
           D  ++ +   F KYK  Y               +     I   L      +  ++I++ +
Sbjct: 72  DVKDSQVNSEFAKYKKQYGSSFNSVLQQNGMTASQLKDSIRSNLLLKQAVKDNVKITDAQ 131

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+ +++  + K       TV Q++   +  A++    LK GK F  LA++     +  + 
Sbjct: 132 LETQFKSYQPK------VTVNQILVSKKSTAEKVISELKDGKSFSSLAKKYSTDTATKNK 185

Query: 313 G-----SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAH-VSNIKPSFTVSFQ 365
           G       +     D +   + F L K G++T   +   +GY +   V++         +
Sbjct: 186 GGRIAAFDNTNTSLDANFKKAAFKL-KNGEYTKTPVKTQYGYQVIQMVNHPSKGTWKQHE 244

Query: 366 -EVKKDI---------------ANQMRITKASEKVKEDYKRLEEFLALGTS 400
            E+K  I               +  ++  K + + K+    L ++L+  +S
Sbjct: 245 SELKDQIVTSKMSDSNTLHSVVSKVLKKGKVTIQDKDLQNVLSDYLSTSSS 295



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 67/197 (34%), Gaps = 43/197 (21%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           + W+  I L  + + F +        +  GS TV +    K+  S++ +S          
Sbjct: 6   KKWL--IVLAGIMMSFTL--------AACGSKTVATTNGGKITESAYYSS---------- 45

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
                      +S    K++L  ++    L+   +  G +    +V  E A+   +  + 
Sbjct: 46  ----------LKSTSSGKQVLQQMILNKVLE---KQYGKDVKDSQVNSEFAK---YKKQY 89

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
                  F S L + G+   +  D     L            ++ ++  L+   + Y   
Sbjct: 90  GS----SFNSVLQQNGMTASQLKDSIRSNLLLKQ---AVKDNVKITDAQLETQFKSYQPK 142

Query: 190 RSVDYIVLNNRHVPAIA 206
            +V+ I+++ +      
Sbjct: 143 VTVNQILVSKKSTAEKV 159


>gi|290513194|ref|ZP_06552556.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella sp. 1_1_55]
 gi|289774405|gb|EFD82411.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella sp. 1_1_55]
          Length = 93

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + LK G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQLKGGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           S  +  + T  +H  FGY I  V   K
Sbjct: 68  SCPEL-EPTGPLHTQFGYHIIKVLYRK 93


>gi|78185901|ref|YP_373944.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium luteolum DSM
           273]
 gi|78165803|gb|ABB22901.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium luteolum DSM
           273]
          Length = 439

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 18/152 (11%)

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLV------FP 278
           A E +    I     +K   + I   E+ + Y  N+      PE  +V Q++        
Sbjct: 132 ADELRGQQMIETLKRKKFSSVTIGYGEVMSFYRSNQASMPNLPEEVSVSQILKFPGVNSA 191

Query: 279 NQKEADEAFQSLKKGK-----KFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSI 329
           ++ EA +  Q ++K +      F +LA     + G +     LG   +  +      D+ 
Sbjct: 192 SKAEALKKIQEIQKKQGSGFLSFEELARRYSMDPGSAPLGGDLGFVQRGELVKP-FEDAA 250

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           ++L K G  + ++   +GY I      + S  
Sbjct: 251 YAL-KDGHVSGIVETRYGYHIIQRLGREGSSI 281



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 60/454 (13%), Positives = 118/454 (25%), Gaps = 83/454 (18%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           ++KA  +  A I ++++  P           +V     V  VG + +  S   +   +EL
Sbjct: 1   MKKALHSVFAVIAVLLIMPP-------TLSAAVVADKVVAVVGSEVIFKSELDS---REL 50

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
               Q  G            L   ILDN++    +    +   +  D   V         
Sbjct: 51  MTRMQYPGLK------DEASLRSTILDNIIDQKIILTKAKIDSVSIDENAVTSM--AVDR 102

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL------ 178
           F     +F+         R G +           L    ++         S  +      
Sbjct: 103 FRQLSGRFTSK--EDMERRLGRSVDAIRRDLADELRGQQMIETLKRKKFSSVTIGYGEVM 160

Query: 179 ----LDQAK--RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
                +QA       E      +     +  + A+     + +  +K    + + E    
Sbjct: 161 SFYRSNQASMPNLPEEVSVSQILKFPGVNSASKAEA-LKKIQEIQKKQGSGFLSFEELAR 219

Query: 233 SYILF-----------------------DVHEKEKKIEISN-DELQAEYEKNKEKYFSPE 268
            Y +                        D     K   +S   E +  Y   +       
Sbjct: 220 RYSMDPGSAPLGGDLGFVQRGELVKPFEDAAYALKDGHVSGIVETRYGYHIIQRLGREGS 279

Query: 269 IRTVEQLVFP------NQKEADEAFQSLK----KGK-KFIQLAEEQGKSLSDISLGSFS- 316
              V  ++        +  EA     +++     GK  F  +A          SLG    
Sbjct: 280 SIHVRHILVAFERSGSDDGEAAAFLDAIRSKVLAGKVDFATMAGSYSDDPVSASLGGLVL 339

Query: 317 ---------KEYIPDVSLADSIFSLAKKGDFTPVI-----HGSFGYVIAHVSNIKPSFTV 362
                       +    L D + +L   GD +         G   + I  +++      +
Sbjct: 340 ASGTAGKYLDPSMLRPQLRDIVNALRTPGDISRPTKITPPKGDPFFGIFRLNDRIVPHVL 399

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
             ++    +       K  E      K L + + 
Sbjct: 400 DPEKDYPLLEQLALDNKKQELFDAWVKGLHKEVY 433


>gi|325954018|ref|YP_004237678.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Weeksella virosa DSM
           16922]
 gi|323436636|gb|ADX67100.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Weeksella virosa DSM
           16922]
          Length = 448

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 84/285 (29%), Gaps = 45/285 (15%)

Query: 94  VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
           ++     Q  +   +E     V  EI               +        +G+  K+  +
Sbjct: 15  IAQGLFAQTHKANKIEGIAAVVGDEIVLDS---------DVERDFQTAKLQGMEVKDRCE 65

Query: 154 HYTKMLSRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
               ML    ++        + V        L  Q +RF  +    +  V++       A
Sbjct: 66  FLNNMLLEKVLIDRAKQDTLVVVTNDEVQRTLKGQIERF-TQQIGSEKAVIDYFGFKTKA 124

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY-F 265
           +     L  +                 Y           ++ + +E++  +E++K +   
Sbjct: 125 EL-ENELQYYIRDN------------IYAREKRERVVSGLDATPEEVRMFFEEHKTELPD 171

Query: 266 SPEIRTVEQLVF------PNQKEADEAFQSLKK----GKKFIQLAEEQGKSLSDISLGS- 314
             +  ++  ++        N+++  +  + +KK    G  F   A    +     + G  
Sbjct: 172 VKDEYSISHIILYPEIDPENEQKVIDELKQIKKDVEEGSSFATKAILYSEDPGSATNGGQ 231

Query: 315 --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               K  +         F+L + G  +      FGY I  +   K
Sbjct: 232 YLKVKRGMMVKEFDAVAFNLDE-GQVSEPFKTDFGYHIIQLEKRK 275


>gi|319892874|ref|YP_004149749.1| Foldase protein PrsA precursor [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162570|gb|ADV06113.1| Foldase protein PrsA precursor [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464093|gb|ADX76246.1| foldase protein PrsA [Staphylococcus pseudintermedius ED99]
          Length = 318

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 78/229 (34%), Gaps = 54/229 (23%)

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRA------------PEYKRISYILFDVHEKEKK 245
           +      I   ++  + ++    K  + +             E +++  + +      +K
Sbjct: 75  DKVDQKQIDKETDEEIEKY--GGKKQFESLLKQQGMTIDDYKEQRKL--VSYQKELLNEK 130

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF---------------QSL 290
           +++S+ E++               +    ++   +++ D+                 + L
Sbjct: 131 VKVSDKEIK------------ESTKKASHILIKVKQDKDDKEGLSDKDAKKKIDEIKEKL 178

Query: 291 KKG-KKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            K  K F ++A+E+        + SLG   K  +      +++F L K+G  + V+   +
Sbjct: 179 DKNPKDFDKIAKEESMDSTKDKNGSLGYVIKGQMVKP-FEEALFKL-KEGQISDVVKTEY 236

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           GY I             F + K  +  ++   K  E  K      ++ L
Sbjct: 237 GYHIIR-----ADKEDDFDKEKSKLKEKIIQNKLQEDPKILTDAYKDLL 280


>gi|242243062|ref|ZP_04797507.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus epidermidis
           W23144]
 gi|242233520|gb|EES35832.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus epidermidis
           W23144]
          Length = 322

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 41/188 (21%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---- 283
           E K++S           K+ +S+ E++               +    ++   + ++    
Sbjct: 111 EQKKLSAY--QKQLLLDKVNVSDKEIKEN------------SKKASHILIKVKSKSSDKE 156

Query: 284 -----------DEAFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLAD 327
                      ++  + ++K   KF ++A+++    S    D SLG   K  + D S   
Sbjct: 157 GLSDKKAKEKAEKIQKEVEKNPNKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVD-SFEK 215

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           ++F L K+G+ + V+   +GY I             F   K +I  ++   K  +K K  
Sbjct: 216 ALFKL-KEGEVSKVVKTDYGYHIIK-----ADKETDFNSEKSNIKQKLIEEKVQKKPKLL 269

Query: 388 YKRLEEFL 395
               +E L
Sbjct: 270 TDAYKELL 277


>gi|83647099|ref|YP_435534.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
 gi|83635142|gb|ABC31109.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
          Length = 93

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              +   ++  ++ + ++  + ++ G  F  LA+E  +  S      LG F    +    
Sbjct: 2   ARASARHILVNSEDQCNDLKKQIEDGADFAALAKEHSQCPSGRNGGELGEFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A+ G     +   FGY +  V+   
Sbjct: 61  FDQVVFS-AEVGTVQGPVKTQFGYHLLEVTKRT 92


>gi|221198560|ref|ZP_03571605.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD2M]
 gi|221207789|ref|ZP_03580796.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD2]
 gi|221172286|gb|EEE04726.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD2]
 gi|221181011|gb|EEE13413.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD2M]
          Length = 262

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 18/171 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSL-KKGKKF 296
           E    + +  Y ++  ++   +I     ++F           ++ A+ A   +      F
Sbjct: 86  EPDRADCERYYAQHPARFRRNDIVYASHVLFAVTDRVPLAPLRQRAERALADVVAAPDTF 145

Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             +A       S     SLG   +          ++F     G    +++  FG+ I  +
Sbjct: 146 DAVARASSNCPSAQLGGSLGQLLRGDTV-PEFEAALFDTDGLGVLPKLVNTRFGFHIVRI 204

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            +  P  TV F  V   IA  +   +  ++    Y  +   LA G  ++ +
Sbjct: 205 DHRVPGDTVPFDAVAAQIAAHL-TARVRQRAMRQYVAI---LAGGAHIEGV 251


>gi|159162312|pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE,
           Hpar14
          Length = 104

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 12  KVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 70

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 71  AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 104


>gi|206580899|ref|YP_002241159.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae 342]
 gi|206569957|gb|ACI11733.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae 342]
          Length = 93

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            +    +K A E    L++G  F  LA+   K  S      LG F +  +       ++F
Sbjct: 9   HIQVKEEKLAHEILAKLERGISFDHLAKRYSKCPSGRHGGDLGEFPQGTMVGP-FDQAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L K       +   FGY I  V
Sbjct: 68  SCPLLKP---YGPVKTKFGYHIIKV 89


>gi|329962620|ref|ZP_08300568.1| PPIC-type PPIASE domain protein [Bacteroides fluxus YIT 12057]
 gi|328529651|gb|EGF56549.1| PPIC-type PPIASE domain protein [Bacteroides fluxus YIT 12057]
          Length = 455

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/501 (10%), Positives = 128/501 (25%), Gaps = 100/501 (19%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI-GFVVN 76
            VVLF   L+ G +           V  VG + +  S    +       +S    G   +
Sbjct: 9   FVVLFALTLLAGSTVYGQDNVIDEVVWVVGDEAILKSEVEEA------RMSALFDGRKFD 62

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI--ARSPLFHGKDNKFSH 134
            +    +  +  +                  +E     V   +    +       ++   
Sbjct: 63  RDPYCVIPEEIAV------QKLFLHQAALDSIEVSENEVIQRVDYMTNMYIANIGSREKM 116

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           + + ++ + +    +   ++  + L    +    VG                        
Sbjct: 117 EEYFNKTSSQ--IRETLRENAREGLKVQKMQQKLVG------------------------ 150

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRISYILFDVHEKEKKIEISNDE 252
                         + A + ++F+    +     P    +  I        ++IE     
Sbjct: 151 ----------EIKVTPAEVRRYFKNRPQDSIPYIPTQVEVQIITLQPKIPLEEIEDVKKR 200

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+                                   + KG+ F  LA    +       
Sbjct: 201 LREY------------------------------TDRINKGESFSMLARMYSEDRGSAMR 230

Query: 313 GS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
           G    FS   + D + A+  F+L      + ++   +G+ I  +   +     +   + K
Sbjct: 231 GGEIEFSGRGMLDPAYANVAFNLQDPNKVSKIVESEYGFHIIQLIEKRGDRIKTRHILLK 290

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
               +  +T A+ ++      +            +  ++K    +  L+     +    E
Sbjct: 291 PHVPEEALTAANARLDSIADDIRNNKFSFEEAASVLSQDKDTRNNHGLLPNPNNNTSKFE 350

Query: 430 VAAIPYKEQL---------LFRVFGKDDPLSKDHTVALPD-----GSYMWVQIKESIPAR 475
           +  +P +            +   F      +      +         +      +    +
Sbjct: 351 MQELPPEIAKVVDKMKVGEISEAFTMIPQKTGKEECVIVKLKSRTNGHKATIADDYQNLK 410

Query: 476 DRKLEEVLTDVKKDWKTVKTA 496
           +  LE+   +V   W   K  
Sbjct: 411 EIVLEKRRDEVLDKWIREKQK 431


>gi|282875776|ref|ZP_06284643.1| PPIC-type PPIASE domain protein [Staphylococcus epidermidis SK135]
 gi|281294801|gb|EFA87328.1| PPIC-type PPIASE domain protein [Staphylococcus epidermidis SK135]
 gi|329724902|gb|EGG61405.1| PPIC-type PPIASE domain protein [Staphylococcus epidermidis VCU144]
          Length = 325

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 41/188 (21%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---- 283
           E K++S           K+ +S+ E++               +    ++   + ++    
Sbjct: 114 EQKKLSAY--QKQLLLDKVNVSDKEIKEN------------SKKASHILIKVKSKSSDKE 159

Query: 284 -----------DEAFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLAD 327
                      ++  + ++K   KF ++A+++    S    D SLG   K  + D S   
Sbjct: 160 GLSDKKAKEKAEKIQKEVEKNPNKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVD-SFEK 218

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           ++F L K+G+ + V+   +GY I             F   K +I  ++   K  +K K  
Sbjct: 219 ALFKL-KEGEVSKVVKTDYGYHIIK-----ADKETDFNSEKSNIKQKLIEEKVQKKPKLL 272

Query: 388 YKRLEEFL 395
               +E L
Sbjct: 273 TDAYKELL 280


>gi|148977503|ref|ZP_01814092.1| parvulin-like peptidyl-prolyl isomerase [Vibrionales bacterium
           SWAT-3]
 gi|145963298|gb|EDK28564.1| parvulin-like peptidyl-prolyl isomerase [Vibrionales bacterium
           SWAT-3]
          Length = 431

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 122/372 (32%), Gaps = 88/372 (23%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V    +  S    S K       +  G  + S+      LD+++L+ L+      Q  E 
Sbjct: 34  VNEGVILQSDIDTSMKTLRANAKKS-GQTLPSQDV----LDEQVLEKLIIDTIQTQEAER 88

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
           IG+  D  R+   I        KDN  + +   + +A EG++   +         R  V 
Sbjct: 89  IGVRIDDARLDQAIEGI----AKDNNQTVEQLTASVAEEGLSYNAF---------REQVR 135

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNY 224
                             R     R ++ +     ++  I A  +NA +           
Sbjct: 136 KEIAAS----------EARNALVRRRINILPAEVDNLADILAQETNATVQ---------- 175

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
                 +I +I    ++ +     + +EL                          + +A 
Sbjct: 176 -----YKIGHIQLRFNDDQ-----TKEEL--------------------------EAQAK 199

Query: 285 EAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           E  + L  GK F  +A    K   +L     G   KE +P    AD I  +  KG     
Sbjct: 200 ELVEELNSGKDFSTMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKGSIIGP 257

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKRLEEFLA 396
                G+ I  + ++K   TV+  EV      I     +    A E+++E  +R+    A
Sbjct: 258 FRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDDGAKEQLEEITRRVN---A 314

Query: 397 LGTSMDEISRRE 408
              S  +++++ 
Sbjct: 315 GEASFGDMAQQY 326


>gi|118089325|ref|XP_420136.2| PREDICTED: similar to Protein (peptidyl-prolyl cis/trans isomerase)
           NIMA-interacting, 4 (parvulin) [Gallus gallus]
          Length = 125

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++      A EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 33  KVRHILCEKHGRAMEAMEKLKAGVRFSEVASQYSEDKARQGGDLGWMTRGSMVGP-FQEA 91

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L      K     P +   FGY I  V   K
Sbjct: 92  AFALPVSSMDKPVYTDPPVKTKFGYHIIMVEGRK 125


>gi|119945608|ref|YP_943288.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
 gi|119864212|gb|ABM03689.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
          Length = 93

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++  +++   +  Q ++ G  F  LA++     S     +LG F    +        
Sbjct: 6   ARHILVSSEESCLDIKQQIEAGTDFADLAKKHSSCPSGAQGGALGEFGPGMMV-PEFDAV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +FS A  G     +   FGY +  V++ +
Sbjct: 65  VFS-ADVGSVQGPVKTQFGYHLLEVTSRQ 92


>gi|27468439|ref|NP_765076.1| hypothetical protein SE1521 [Staphylococcus epidermidis ATCC 12228]
 gi|46396902|sp|Q8CNR4|PRSA_STAES RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|27315986|gb|AAO05120.1|AE016749_66 prsA [Staphylococcus epidermidis ATCC 12228]
          Length = 325

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 41/188 (21%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---- 283
           E K++S           K+ +S+ E++               +    ++   + ++    
Sbjct: 114 EQKKLSAY--QKQLLLDKVNVSDKEIKEN------------SKKASHILIKVKSKSSDKE 159

Query: 284 -----------DEAFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLAD 327
                      ++  + ++K   KF ++A+++    S    D SLG   K  + D S   
Sbjct: 160 GLSDKKAKEKAEKIQKEVEKNPNKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVD-SFEK 218

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           ++F L K+G+ + V+   +GY I             F   K +I  ++   K  +K K  
Sbjct: 219 ALFKL-KEGEVSKVVKTDYGYHIIK-----ADKETDFNSEKSNIKQKLIEEKVQKKPKLL 272

Query: 388 YKRLEEFL 395
               +E L
Sbjct: 273 TDAYKELL 280


>gi|255320532|ref|ZP_05361713.1| chaperone SurA [Acinetobacter radioresistens SK82]
 gi|255302504|gb|EET81740.1| chaperone SurA [Acinetobacter radioresistens SK82]
          Length = 436

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/393 (12%), Positives = 115/393 (29%), Gaps = 64/393 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S  I    +    +  +   V          L+K+ LD L+     
Sbjct: 31  DEVVAIVDNGVILKSDLIQGVAELKHQLETQKREVPP-----QAFLEKQALDQLILRQAQ 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI---DHYT 156
            + +    ++ D   +   + +      +    + + F  +L    +    Y    +   
Sbjct: 86  LEQVRRYNVKPDEKSLNEAVMKVA---SQSGTKTLEAFQQKLDA--MAPGTYESLRNRIA 140

Query: 157 KMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPAIADPS 209
           + L+   +     +  ++ S+  ++      Q +        V +  +  +        S
Sbjct: 141 EDLAINRLRQQQVMSRIKISDQDVENFLKSPQGQAALGSQVHVIHARITPKDKQTANVES 200

Query: 210 NAV--------------LTQWFEKYKDN-------YRA----PEYKRISYILFDVHEKEK 244
            A               +++ +   K         +R+    P           V +  +
Sbjct: 201 VAQQVKNALNTSNDIQAISKQYSDTKVQVEGVDMGFRSLADIPAELAARVSALPVGQTTE 260

Query: 245 KIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293
            I   +    L+    K  E+           ++            +   D  +  LK G
Sbjct: 261 LIPARDGVHVLKVLERKTSEQKALVPQYQTRHILIQPSEVVSPENAKHMIDNIYNRLKAG 320

Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           + F  LA     + G +    SLG  S   +      + + S    G  +      FG+ 
Sbjct: 321 EDFTVLASTFSTDTGSARDGGSLGWVSPGVMV-PEFEEKMKS-TPVGQVSAPFQTQFGWH 378

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           I  V++ +       +E ++ +A Q+   +  E
Sbjct: 379 ILQVTDTRQQDMT--EEYQERMARQILGERQFE 409


>gi|332861031|ref|XP_001139476.2| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Pan troglodytes]
          Length = 94

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 2   KVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 60

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 61  AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 94


>gi|330817346|ref|YP_004361051.1| Putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderia gladioli BSR3]
 gi|327369739|gb|AEA61095.1| Putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderia gladioli BSR3]
          Length = 325

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 13/194 (6%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRIS-YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            A +   ++         E  + +    F +H++ +   +++ +++A+Y++        E
Sbjct: 125 QAAVKAHYDTQAQVLAVVEQAKTTAMTEFWLHDQVRPASVTDAQVRAKYDEVVGLLGDTE 184

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSF--------SK 317
           ++    +V  ++  AD A   L++G  F QLA +      +    +L             
Sbjct: 185 LKPSA-IVLKDRAAADAALAQLERGADFAQLARQLSQGPGAQQGGALNWVSFRLPIPEGG 243

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
           E      LA ++ +L + G     I  + GY I  V + + +   +F +VK  +  Q+  
Sbjct: 244 EQNWPQPLARALVALPRGGMSREPIEAAGGYWILRVDDKRATRIPAFDDVKAALRQQLET 303

Query: 378 TKASEKVKEDYKRL 391
                   E    L
Sbjct: 304 AALQRATIEVVVDL 317


>gi|293605263|ref|ZP_06687649.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
 gi|292816319|gb|EFF75414.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
          Length = 267

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 60/174 (34%), Gaps = 17/174 (9%)

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSL-KKGKKFIQLAEEQ 303
           +  Y  N +++   E+   + ++F           +  A+   Q L     +F ++A  Q
Sbjct: 93  RRFYHANPQRFMVGELIEADHILFQVTPDVNLDMLRAHANTVLQDLLADPSRFAEVARAQ 152

Query: 304 G---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
                +    +LG   +          ++F+L   G    ++    G  I  V+      
Sbjct: 153 SNCPSAAVGGNLGQLGRGDTV-PEFERAVFALPSGGLLPQLLQTRHGLHIVRVTRRIEGR 211

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRL--EEFLALGTSMDEISRREKIVS 412
            + ++ V + IA  +  + + +     Y +L  E+    G  ++       +  
Sbjct: 212 MLPYEHVAQQIAAAL-SSMSQDTAWRQYTKLLVEQADVQGIDLESSEADRVVAG 264


>gi|291238039|ref|XP_002738936.1| PREDICTED: CG11858-like [Saccoglossus kowalevskii]
          Length = 131

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G++F ++A +  +  +     LG  ++  +      D+
Sbjct: 39  KVRHILCEKHSKVMEAMEKLKAGERFNEVATKYSEDKARQGGDLGWMTRGSMVGP-FQDA 97

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L+           P +   FGY I  +   K
Sbjct: 98  AFALSPSTTGNPVYTDPPVKTKFGYHIIMIEGKK 131


>gi|113931156|ref|NP_081457.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Mus
           musculus]
 gi|82905251|ref|XP_897983.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Mus musculus]
 gi|20139149|sp|Q9CWW6|PIN4_MOUSE RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4; AltName: Full=Parvulin-14; Short=Par14; AltName:
           Full=Peptidyl-prolyl cis-trans isomerase Pin4;
           Short=PPIase Pin4; AltName: Full=Rotamase Pin4
 gi|12845707|dbj|BAB26863.1| unnamed protein product [Mus musculus]
 gi|111600200|gb|AAI19358.1| Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Mus musculus]
 gi|111601005|gb|AAI19356.1| Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Mus musculus]
 gi|123229763|emb|CAM24632.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 4
           (parvulin) [Mus musculus]
 gi|148682182|gb|EDL14129.1| mCG116634 [Mus musculus]
 gi|149042164|gb|EDL95871.1| rCG36372, isoform CRA_a [Rattus norvegicus]
          Length = 131

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 39  KVRHILCEKHGKIMEAMEKLKSGMRFSEVATQYSEDKARQGGDLGWMTRGSMVGP-FQEA 97

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 98  AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131


>gi|134283497|ref|ZP_01770197.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 305]
 gi|167723620|ref|ZP_02406856.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei DM98]
 gi|134245246|gb|EBA45340.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 305]
          Length = 265

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 18/172 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQS-LKKGKKF 296
           E + D  +  Y  +  ++   +I     ++F           ++EA+      L + + F
Sbjct: 89  EPTRDACERYYLNHAARFRRRDIVYASHILFAVTDATPLAPLRREAEATLARVLAEPQTF 148

Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
              A E      +    SLG   +          ++F     G    +++  FG+ I  +
Sbjct: 149 EARARELSNCPSAQVGGSLGQLLRGDSV-PEFDAAVFDTTDSGVLPRLVNTRFGFHIVRI 207

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
               P   V F  V  +IA  +    A     +  ++    LA G  ++ ++
Sbjct: 208 ERRVPGDPVPFDAVAAEIAAFL----AERVRHKAIQQYVTILASGARIEGVA 255


>gi|291279157|ref|YP_003495992.1| hypothetical protein DEFDS_0758 [Deferribacter desulfuricans SSM1]
 gi|290753859|dbj|BAI80236.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 325

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 17/194 (8%)

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKK----IEISNDELQAEYEKNKEKYFSPEIR 270
           ++ +  K+N    +    +Y+  +V +  K+     +I    L+  Y+ N++ + + E  
Sbjct: 123 EYAKALKENGITEKILYETYMDLNVKDIIKEKIFSEKIEPKVLKEYYKNNQQMFSTGESY 182

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQ------LAEEQGKSLSDISLGSFSKEYIP--- 321
            V+  +   + +A E      + KK         L EE  K+      G + ++      
Sbjct: 183 VVKNCLI--KADARELKAKEMEEKKKEAENLLKMLKEEDEKAWQKCDKGIYPEQDTVYKF 240

Query: 322 -DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                   IF L KKGDF       +GY+I  V +IKPS  + F E+K +I   M++ K 
Sbjct: 241 SKNYPIKEIFKL-KKGDFGGPYRNIYGYLIVKVIDIKPSEVLPFDEIKNEIERLMKLKKF 299

Query: 381 SEKVKEDYKRLEEF 394
            +  K   KR ++ 
Sbjct: 300 KDYYKNLLKRAKDE 313


>gi|297585156|ref|YP_003700936.1| SurA domain-containing protein [Bacillus selenitireducens MLS10]
 gi|297143613|gb|ADI00371.1| SurA domain protein [Bacillus selenitireducens MLS10]
          Length = 272

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 56/161 (34%), Gaps = 5/161 (3%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
             V  V  +++    F+ +++ +   ++ +    +  E      +   + D++V+   L 
Sbjct: 81  DVVAEVNGEEISQEEFLATYEPQFQQMAMQ--SQMTGEEVDEAQIRDMVADSMVNNTLLI 138

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q  +  G+EA    +   +        ++   S D F+  L  +G  E   +D     + 
Sbjct: 139 QEADSQGIEATDEDIEQLLTELAQ---QNQMESSDQFLQALEEQGTPEDVVMDQVEMQVK 195

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
              ++    G +  S+  +++        +      L    
Sbjct: 196 VDQLIANEAGEIDVSDAEVEEMYAQLEAQQEQSGGELPPLD 236


>gi|291387204|ref|XP_002710178.1| PREDICTED: protein (peptidyl-prolyl cis/trans isomerase)
           NIMA-interacting, 4 (parvulin)-like [Oryctolagus
           cuniculus]
          Length = 131

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G KF ++A +  +  +    +LG  ++  +      ++
Sbjct: 39  KVRHILCEKHGKIMEAMEKLKSGMKFSEVAAQYSEDKARQGGNLGWMTRGSMVGP-FQEA 97

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 98  AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131


>gi|167589752|ref|ZP_02382140.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ubonensis Bu]
          Length = 310

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 72/194 (37%), Gaps = 16/194 (8%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            A   Q ++       A E  + ++     + ++ K   +++ +++A Y+         E
Sbjct: 110 QAAQKQHYDTKPQVVAAVEQAKALAMTQAYLRDQVKPAPVTDADVKARYDAIVATLGENE 169

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SK 317
            +    +   +   A +     +KG+ F +LA++  K  +    G+              
Sbjct: 170 YKPSA-IAVNDADTAKQLIARFRKGEDFAKLAQDNSKGPAAAQGGALNWISFKTPITAGN 228

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM-- 375
                  LA+++  L + G     +     Y I  V + +P+   +F + K  +  Q+  
Sbjct: 229 TQNWPQPLAEALVKLPQGGLTRDPVQVGDAYWILRVDDKRPTQVPAFDQAKDMLRQQLEQ 288

Query: 376 -RITKASEKVKEDY 388
             + KA+ +V  D 
Sbjct: 289 VAMEKATAQVVADL 302


>gi|317050626|ref|YP_004111742.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum
           indicum S5]
 gi|316945710|gb|ADU65186.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum
           indicum S5]
          Length = 319

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 112/367 (30%), Gaps = 80/367 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD---NLVSG 96
                 V    +       + K+ +   ++     +  E+AR   + + +L+     V  
Sbjct: 28  DGIAAVVNGVPITIQEVRQANKEHIERATR----GLADEQAREATM-QMLLEGTHQKVEQ 82

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             L+ +     +     +V   I +       +N  S     S LA EGI+ + Y     
Sbjct: 83  MLLEDYGRRNRIFISAQQVEEAINQVAA----NNNVSRSALESMLADEGISMESYRRDIR 138

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L    +       +  S L +  A R                                
Sbjct: 139 VQLLVMQIGQKLSQEISVSELEVVSAFR-------------------------------- 166

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
               +  ++   Y  + ++L  +  K     I   E                   + + +
Sbjct: 167 ----EGRFQRIPYADVGHVLIALDGKSDDQAIRIAE------------------RLHERI 204

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
                E +EA +   +G    +     G  + D+  G   +E      L  +IFS+ +KG
Sbjct: 205 ISGDIEFEEAARQYSEGPNAAE-----GGLMKDVRRGRLLRE------LDQAIFSM-EKG 252

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
             T V   S GY I H+ ++  +  +S ++        +   K   +++     L +   
Sbjct: 253 QTTLV-RSSVGYHILHLYDLGFNREMSDEDF-SRTRAALLREKQERRLQGLMDELRDSAV 310

Query: 397 LGTSMDE 403
           +  ++ E
Sbjct: 311 IQYNLKE 317


>gi|119774802|ref|YP_927542.1| cell wall hydrolase/autolysin [Shewanella amazonensis SB2B]
 gi|119767302|gb|ABL99872.1| cell wall hydrolase/autolysin [Shewanella amazonensis SB2B]
          Length = 92

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++   ++EA++    + KG+ F +LA++     S      LG F    +   +  D 
Sbjct: 6   ARHILVKTREEAEKLKARIDKGEDFGKLAKQYSLCPSKRRSGDLGEFGPGQMVK-AFDDV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAH 352
           +F      +    +   FG+ +  
Sbjct: 65  VFKKPIL-EVHGPVKTRFGFHLIQ 87


>gi|295095199|emb|CBK84289.1| Parvulin-like peptidyl-prolyl isomerase [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 93

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLAQDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 68  SCPVL-EPTGPLHTQFGYHIIKV 89


>gi|281338941|gb|EFB14525.1| hypothetical protein PANDA_015066 [Ailuropoda melanoleuca]
          Length = 95

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 3   QVRHILCEKHGKIMEAMEKLKSGMRFSEVATQYSEDKARQGGDLGWMTRGSMVGP-FQEA 61

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 62  AFALPVSGLDKPVFTDPPVKTKFGYHIIMVEGKK 95


>gi|28870204|ref|NP_792823.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853450|gb|AAO56518.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 93

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++  ++++ DE    ++ G  F ++A+      S      LGSF    +       
Sbjct: 5   TARHILVSSEEKCDELKTQIEGGADFAEVAKANSSCPSSRQGGDLGSFGPGQMVK-EFDT 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +FS A        +   FGY +  V++ +
Sbjct: 64  VVFS-APVNTVQGPVKTQFGYHLLEVTSRQ 92


>gi|314936106|ref|ZP_07843453.1| foldase protein PrsA [Staphylococcus hominis subsp. hominis C80]
 gi|313654725|gb|EFS18470.1| foldase protein PrsA [Staphylococcus hominis subsp. hominis C80]
          Length = 329

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 69/187 (36%), Gaps = 40/187 (21%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285
           E KR+S           KI++S+ E++             + +    ++   + ++D+  
Sbjct: 124 EQKRLSAY--QKQLLNDKIKVSDKEIKD------------DTKKASHILIKVKSDSDKEG 169

Query: 286 ------------AFQSLKKG-KKFIQLAEEQG----KSLSDISLGSFSKEYIPDVSLADS 328
                         + ++K   KF +LA+++      +    SLG   K  + D     +
Sbjct: 170 LSDKKAKAKAEKIQKEVEKNPNKFDELAKKESMDSASAKKGGSLGYVIKGQMVD-KFDKA 228

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           +F L K+G  + ++   +GY I   +         F + K  +  ++   K  +  K   
Sbjct: 229 LFKL-KEGQISDIVKTEYGYHIIKANKED-----DFNKQKSQLKTKIIEQKVQKNPKLLT 282

Query: 389 KRLEEFL 395
              ++ L
Sbjct: 283 NAYKDLL 289


>gi|251811182|ref|ZP_04825655.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805310|gb|EES57967.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 322

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 41/188 (21%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---- 283
           E K++S           K+ +S+ E++               +    ++   + ++    
Sbjct: 111 EQKKLSAY--QKQLLLDKVNVSDKEIKEN------------SKKASHILIKVKSKSSDKE 156

Query: 284 -----------DEAFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLAD 327
                      ++  + ++K   KF ++A+++    S    D SLG   K  + D S   
Sbjct: 157 GLSDKKAKEKAEKIQKEVEKNPNKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVD-SFEK 215

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           ++F L K+G+ + V+   +GY I             F   K +I  ++   K  +K K  
Sbjct: 216 ALFKL-KEGEVSKVVKTDYGYHIIK-----ADKETDFNSEKSNIKQKLIEEKVQKKPKLL 269

Query: 388 YKRLEEFL 395
               +E L
Sbjct: 270 TDAYKELL 277


>gi|167898198|ref|ZP_02485600.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 7894]
 gi|167922759|ref|ZP_02509850.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei BCC215]
          Length = 265

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 18/172 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQS-LKKGKKF 296
           E + D  +  Y  +  ++   +I     ++F           ++EA+      L + + F
Sbjct: 89  EPTRDACERYYLNHAARFRRCDIVYASHILFAVTDATPLAPLRREAEATLARVLAEPQTF 148

Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
              A E      +    SLG   +          ++F     G    +++  FG+ I  +
Sbjct: 149 EARARELSNCPSAQVGGSLGQLLRGDSV-PEFDAAVFDTTDSGVLPRLVNTRFGFHIVRI 207

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
               P   V F  V  +IA  +    A     +  ++    LA G  ++ ++
Sbjct: 208 ERRVPGDPVPFDAVAAEIAAFL----AERVRHKAIQQYVTILASGARIEGVA 255


>gi|330809635|ref|YP_004354097.1| peptidylprolyl isomerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377743|gb|AEA69093.1| putative peptidylprolyl isomerase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 314

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 81/268 (30%), Gaps = 35/268 (13%)

Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
            +   N           L+   V+             +++  R   E       + +   
Sbjct: 73  QQMRGNRAALEGWIRARLAEKAVLEQADAQGWRERPEVERQTRAAAEQIVFRDYLQSVSQ 132

Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
           VPA   PS   L Q ++  K N+ AP   R+S I     E +    +             
Sbjct: 133 VPAGY-PSEDELKQAYDAGKANWTAPALYRVSQIFLATTEPQTVEAV------------- 178

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKE 318
                   R   +L    Q              +F  LA    +  S    G    F   
Sbjct: 179 -------RRQALELSKKAQ----------ASPAEFGALASRFSQDRSSAERGGDSGFQPL 221

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
                 + +++  L K G  +  +    G+ +  ++  +P+   +  +V++ +   +R  
Sbjct: 222 QQLVPPVRETVARL-KVGAVSDPVQSPAGFHVIKLTEQQPAREATLDDVRERLTQALRAQ 280

Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISR 406
           +  +  K     + +   L     ++S+
Sbjct: 281 RQEQIAKAYLDGMLDTATLSIDGAQLSK 308


>gi|238650989|ref|YP_002916845.1| hypothetical protein RPR_06330 [Rickettsia peacockii str. Rustic]
 gi|238625087|gb|ACR47793.1| hypothetical protein RPR_06330 [Rickettsia peacockii str. Rustic]
          Length = 295

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 65/190 (34%), Gaps = 16/190 (8%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           L+++   F  + ++ A       + V SV  + +  + F    K  +      +  V + 
Sbjct: 4   LLLIITVFFTFNVAQASL----PNIVASVNDEPITLNEFRARKKMIMA-----LNNVESL 54

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
             A+   L   +L +L+  + L Q+  D   E     +   I          NK  H   
Sbjct: 55  TPAQDKQLSDLVLKSLIDESLLFQYAGDR--EIPQEEIENAIKSIE----DRNKMPHGSL 108

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIV 196
           +  L    +N   +I      L + +++      ++ SN  +D A     +    +   V
Sbjct: 109 LQYLKSRSVNPDSFISQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQKDVEISMQV 168

Query: 197 LNNRHVPAIA 206
             ++     A
Sbjct: 169 FTSKDGGNKA 178


>gi|269216505|ref|ZP_06160359.1| putative peptidylprolyl isomerase PrsA3 [Slackia exigua ATCC
           700122]
 gi|269130034|gb|EEZ61116.1| putative peptidylprolyl isomerase PrsA3 [Slackia exigua ATCC
           700122]
          Length = 424

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 92/308 (29%), Gaps = 28/308 (9%)

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
                G +     V   +A    F   ++      +   +   G   ++           
Sbjct: 51  AATVNGTDIGENAVSSYVAN---FRNLNSLNEDTDWAQWMVDNGYTAEDLRKEVINYYVS 107

Query: 162 TDVVGMF--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS-NAVLTQWFE 218
            ++V        ++     +D+       N   D     +  + A    S N  L     
Sbjct: 108 QELVRQAAEQNNVKVDEDAVDEQLNTMKMNYDSD----GDGSLNADETASWNKALQAVGI 163

Query: 219 KYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
             +D YR   E   +   L            S++++    +     Y     +    ++F
Sbjct: 164 ASEDEYRTLLEMYSLEASL--QKAVVPDTAPSDEDMLQYAQMYATAYDGA--KKSSHILF 219

Query: 278 P--NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFS 331
              +Q  A E    +  G+  F + A++     +  + G      + +       D++  
Sbjct: 220 ASDDQATAQEVLDKINSGELDFAEAAKQYSTDTASAADGGNVGWDVLNSFVKEYTDALSG 279

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNI--KPSFTVSFQEVKKD----IANQMRITKASEKVK 385
           L + G+ + ++   +G  I   + +   P    S  ++  +    I   ++    +   K
Sbjct: 280 LGE-GEVSGLVTSEYGIHIIKCTQVFKTPEEVTSVDQIPSEWLDSIKASLQQANKTSAYK 338

Query: 386 EDYKRLEE 393
             +K   +
Sbjct: 339 AWFKDFYD 346


>gi|330448427|ref|ZP_08312075.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492618|dbj|GAA06572.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 108

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 18/100 (18%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  +++ AD+  + LKKG KF  LA++     S      LG F K  +       
Sbjct: 6   HALHILVKHKELADDILEQLKKGAKFQDLAKKHSTCPSGKKGGDLGEFRKGAMV-PQFDK 64

Query: 328 SIFS-----------LAKK---GDFTPVIHGSFGYVIAHV 353
           ++FS           +      G     +   FG+ +  V
Sbjct: 65  AVFSGNAISTSQALKMKNNNLRGLIPEPVKTKFGWHVIKV 104


>gi|301780252|ref|XP_002925543.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Ailuropoda melanoleuca]
          Length = 131

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 39  KVRHILCEKHGKIMEAMEKLKSGMRFSEVATQYSEDKARQGGDLGWMTRGSMVGP-FQEA 97

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 98  AFALPVSGLDKPVFTDPPVKTKFGYHIIMVEGKK 131


>gi|269104517|ref|ZP_06157213.1| peptidyl-prolyl cis-trans isomerase PpiC [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161157|gb|EEZ39654.1| peptidyl-prolyl cis-trans isomerase PpiC [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 108

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 18/100 (18%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  +++ AD+  + LKKG KF  LA++     S      LG F K  +       
Sbjct: 6   HALHILVKHKELADDILEQLKKGAKFQDLAKKHSTCPSGKKGGDLGEFRKGAMV-PQFDK 64

Query: 328 SIFS-----------LAKK---GDFTPVIHGSFGYVIAHV 353
           ++FS           L      G     +   FG+ +  V
Sbjct: 65  AVFSGKAISTSQALKLKNNNLRGLIPEPVKTKFGWHVIKV 104


>gi|260494276|ref|ZP_05814407.1| peptidylprolyl isomerase [Fusobacterium sp. 3_1_33]
 gi|260198422|gb|EEW95938.1| peptidylprolyl isomerase [Fusobacterium sp. 3_1_33]
          Length = 563

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 122/361 (33%), Gaps = 51/361 (14%)

Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-NLLLDQAKRFYFENRSVDYIVLNNRHV 202
           + I++++      +M+SR   +           N  LD   +F       DY +     V
Sbjct: 249 QKISKEDAEKQAKEMISRQIKMAKIAKEKGVKVNENLDSISQFQ------DYYIGLAEKV 302

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                 ++  L ++F   K  Y  P       +   V   ++     +D+L         
Sbjct: 303 RDDVKLTDDELLKFFNANKSKYSIPATADAKLVFISVKSAKE-----DDDL--------- 348

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEYI 320
                            +++A++    L   + F +  +     + +    LG+F    +
Sbjct: 349 ----------------AKEKAEKLLSELT-PENFTEKGKSLSNNQDIIYQDLGTFGTTAM 391

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 +++  +        VI   FGY IA+V     +      EV+  +       K 
Sbjct: 392 VK-EFEEALRDVPSNTVVNKVIKTKFGYHIAYVKKNDNNQQW---EVEHILIVPYPSEKT 447

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
             +  E   +++  +  GT    ++  +KI    +   D  G    G  +    Y  ++ 
Sbjct: 448 VTEKLEKLNKVKAEIEAGT----LTLNDKIDEDVIQSFDAKGITPDGV-IPDFVYNPEIA 502

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
             VFG +  L+K   +     + +  Q  + + A D   ++    VK D+   K AE +S
Sbjct: 503 KAVFGTE--LNKVGIINPNKATIVVFQKTKEVKAEDANFDKSKEQVKSDYINNKVAEYMS 560

Query: 501 S 501
            
Sbjct: 561 K 561



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 84/621 (13%), Positives = 187/621 (30%), Gaps = 74/621 (11%)

Query: 4   IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
            IRK  +    K F+++L V F++        S   S          +    ++      
Sbjct: 2   SIRKFRKQ--MKPFIIILTVVFILSLAYGGYESYKTSRANKKAQEAMLLNKDYVQKID-- 57

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
           +    Q +     S+R     +D    ++++         +D+ ++     V     +  
Sbjct: 58  IERAKQDLSRTY-SDRVDKDIVDILAFNDVIDKNLTLHIAKDLKVKVPSSEVDK---QYE 113

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
                      + F   L   G+ +    +   + L        F   + P++  ++   
Sbjct: 114 ELESSMG--DKEQFRRMLQVRGLTKDSLKNQIEENLLMQKTREEFAKNINPTDEEINTYM 171

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
             Y          +N        +     L +  ++ +    APEY+ +           
Sbjct: 172 ALYSIPADKKEEAVNLYKSEKGNEAFREALLKARKEMQIKDLAPEYENL----------- 220

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
             +E +  E +     N +   +     + Q +     E  +A + + +  K  ++A+E+
Sbjct: 221 --VEKTAYEEEGFNITNLDLARATANIMLGQKISKEDAE-KQAKEMISRQIKMAKIAKEK 277

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSI-------------FSLAKKGDFTPVIHGSFGYVI 350
           G  +++ +L S S+     + LA+ +             F  A K  ++         V 
Sbjct: 278 GVKVNE-NLDSISQFQDYYIGLAEKVRDDVKLTDDELLKFFNANKSKYSIPATADAKLVF 336

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
             V + K               + +   KA + + E     E F   G S+   S  + I
Sbjct: 337 ISVKSAKED-------------DDLAKEKAEKLLSELTP--ENFTEKGKSL---SNNQDI 378

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           +  DL          + +E         ++ +V          +     +     V+   
Sbjct: 379 IYQDLGTFGTTAMVKEFEEALRDVPSNTVVNKVIKTKFGYHIAYVKKNDNNQQWEVEHIL 438

Query: 471 SIP-ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
            +P   ++              T K  +    KA       +   K   D+ ++  A  +
Sbjct: 439 IVPYPSEKT------------VTEKLEKLNKVKAEIEAGTLTLNDKIDEDVIQSFDAKGI 486

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
           T + +      +  +  +    VF   +  V      N  + VVF+ T          DK
Sbjct: 487 TPDGV----IPDFVYNPEIAKAVFGTELNKVGIIN-PNKATIVVFQKTKEVKAEDANFDK 541

Query: 590 FISYLTQMMNKDLLDSVIAYL 610
               +      + +   ++ L
Sbjct: 542 SKEQVKSDYINNKVAEYMSKL 562


>gi|222151803|ref|YP_002560961.1| peptidyl-prolyl cis/trans-isomerase PrsA homolog [Macrococcus
           caseolyticus JCSC5402]
 gi|222120930|dbj|BAH18265.1| peptidyl-prolyl cis/trans-isomerase PrsA homolog [Macrococcus
           caseolyticus JCSC5402]
          Length = 303

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 73/217 (33%), Gaps = 34/217 (15%)

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
               I   ++  + ++ ++     +  E            E+ KK  ++++  +      
Sbjct: 75  DEDKINKETDKEIKKYGDE-----KTFEQILQQQSSGMTVEQYKKKRVTDEYQKQFLNDT 129

Query: 261 K---EKYFSPEIRTVEQLVFP--------------NQKEADEAFQSLKKGKK-FIQLAEE 302
               +K      +    ++                 + +A+E  + +K  K  F ++A++
Sbjct: 130 IKISDKDIKDNAKKASHILIAVKSDSNKDGLSDKEAKAKAEEILKQVKANKDDFKKIAKK 189

Query: 303 QGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +            LG   K    + +   ++F L K G+ + ++   FGY I    +   
Sbjct: 190 ESDDTQSAKNNGELGYVVKGQTVE-AFEKALFKL-KPGEISNIVKTEFGYHIIMAED--- 244

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
                  + K  +A  +R  K  +  K   + +++  
Sbjct: 245 --DKDIAKEKDKLAQTIRQNKLQDNPKLYVQAVQKLF 279


>gi|311276483|ref|XP_003135228.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Sus scrofa]
          Length = 131

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G KF ++A +  +  +     LG  ++  +      ++
Sbjct: 39  KVRHILCEKHGKILEAMEKLKSGMKFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 97

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L      K     P +   FGY I  V   K
Sbjct: 98  AFALPISVLDKPVFTDPPVKTKFGYHIIMVEGRK 131


>gi|42521668|ref|NP_967048.1| hypothetical protein Bd0019 [Bdellovibrio bacteriovorus HD100]
 gi|39574198|emb|CAE77702.1| ppiD [Bdellovibrio bacteriovorus HD100]
          Length = 269

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 86/189 (45%), Gaps = 32/189 (16%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV---- 276
           +D +    YK +  +  D+ ++ +KI++S+ E++A Y KN      PE+RT   L+    
Sbjct: 83  QDRFNQEMYKAL--LEKDIGQRVQKIQVSDAEMKAWYAKN------PELRTSHILIEFKA 134

Query: 277 -------FPNQKEADEAFQSLKKGKK-FIQLAEEQGKSL----SDISLGSFSKEYIPDVS 324
                     +K A E ++ +KK K+ F +L +              +G  S+  +   +
Sbjct: 135 GATPAQVAEAKKRATEIYEEVKKSKRPFEELVKLYSDDALSKQVGGDIGWQSRVTLV-PN 193

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-KKDIANQMRITKASEK 383
             +++ ++ K G+ T +I   FG+ +  ++  +     SF+   K+ I   +   K  + 
Sbjct: 194 YYEAVVNM-KVGEITGLIETQFGFHVIKLTGRR-----SFENANKRQIRAAVFDEKRKQV 247

Query: 384 VKEDYKRLE 392
             + ++R++
Sbjct: 248 FNDYFERMK 256


>gi|312883922|ref|ZP_07743639.1| survival protein SurA [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368380|gb|EFP95915.1| survival protein SurA [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 428

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/388 (17%), Positives = 123/388 (31%), Gaps = 99/388 (25%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    +  S    + K  L + ++K G  + S       L++++ + L+     
Sbjct: 28  DQVAVIVNDGVILQSDIKTAMKT-LKINAKKEGQTLPSNSV----LEEQVTEKLILDTIQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG++ D GR+   I        K+N+ +       L +EG+N   + D   K +
Sbjct: 83  QQQADRIGVKVDDGRLNEAIEEI----AKNNQQTIAELKEELQKEGLNYALFRDQVRKEI 138

Query: 160 SRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           S ++     V   +      +D       +  S                           
Sbjct: 139 SVSEARNAIVRRRINILPSEVDHLASLLSQESSATV------------------------ 174

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                       +I +I   V + + K +I                              
Sbjct: 175 ----------QYKIGHIQLRVEDGDDKAQI------------------------------ 194

Query: 279 NQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
            +++A +    L+KG  F  +A    +  K+L     G   KE +P    AD I  +  K
Sbjct: 195 -KQQAMDIVSELEKGADFKTMAYTFSKGPKALKGGDWGWMRKEEMP-TIFADEI-KMQNK 251

Query: 336 GDFTPVIHGSFGYVIAHVSN------------------IKPSFTVSFQEVKKDIANQMRI 377
           G          G+ I  + +                  IKPS  +S + VKK++    + 
Sbjct: 252 GSIIGPFMSGSGFHILKIEDVKGLQTVAVTEVNARHILIKPSIILSDEGVKKELIEITKR 311

Query: 378 TKASEK-VKEDYKRLEEFLALGTSMDEI 404
            K+ E    +  K+  +    GT   E+
Sbjct: 312 IKSGEVTFSQMAKQYSQDTGSGTQGGEL 339


>gi|294508706|ref|YP_003572765.1| Foldase protein prsA [Precursor] [Salinibacter ruber M8]
 gi|294345035|emb|CBH25813.1| Foldase protein prsA [Precursor] [Salinibacter ruber M8]
          Length = 342

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 88/278 (31%), Gaps = 45/278 (16%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVP 203
           ++ + Y       + R            PS    DQ +  + +          L      
Sbjct: 63  LSAQRYQQQVRMSMKRQ----------APSQQSEDQMQETHRQLIRGFARQHALRGEAKA 112

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE--------LQA 255
              D     +    EK K  Y + E  +      ++     +  +++          +  
Sbjct: 113 QNLDVDPTQVNARLEKLKQRYESEEQFQKQLARNNMTVDSVRSLLADQFRQQQLQRQMAE 172

Query: 256 EYEK----NKEKYFSPEIR-TVEQLVFPNQKEADE--------AFQSLKKGK-----KFI 297
            YE+    +   Y     R   + ++    + A E        A  +L          F 
Sbjct: 173 NYEEPSSDDVTAYSEKNRRIRAQHILIKAGENAPESEVDSARKAAAALVDSAKMEDVDFA 232

Query: 298 QLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHV 353
           +LA        +     LG F+++ + D   A++ ++L+  GD  P  +H  FG+ +  +
Sbjct: 233 ELARRHSQGPSAQKGGDLGFFTRDRMVD-KFAEAAYALSDSGDVAPEPVHTRFGFHVIRL 291

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +N       +  + +K +  + R     +++    +  
Sbjct: 292 TNAGEPMDTT--KARKQMTKERRQQAVEDQINALLEDA 327


>gi|28900288|ref|NP_799943.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364362|ref|ZP_05777010.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           K5030]
 gi|260880855|ref|ZP_05893210.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           AN-5034]
 gi|260895998|ref|ZP_05904494.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           Peru-466]
 gi|28808599|dbj|BAC61776.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308087035|gb|EFO36730.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           Peru-466]
 gi|308091575|gb|EFO41270.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           AN-5034]
 gi|308113698|gb|EFO51238.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           K5030]
          Length = 93

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++  + LKKG KF  LA++     S      LG F +  +         F
Sbjct: 9   HILVKHKEQAEDIIKQLKKGAKFQTLAKKYSTCPSGKRGGDLGEFRRGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHVSNIKP 358
           S    G+          FG+ +  V    P
Sbjct: 68  S----GEVLTPHLVKTKFGWHVVKVLYRIP 93


>gi|319401108|gb|EFV89327.1| PPIC-type PPIASE domain protein [Staphylococcus epidermidis FRI909]
          Length = 326

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 41/188 (21%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---- 283
           E K++S           K+ +S+ E++               +    ++   + ++    
Sbjct: 114 EQKKLSAY--QKQLLLDKVNVSDKEIKEN------------SKKASHILIKVKSKSSDKE 159

Query: 284 -----------DEAFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLAD 327
                      ++  + ++K   KF ++A+++    S    D SLG   K  + D S   
Sbjct: 160 GLSDKKAKEKAEKIQKEVEKNPNKFREIAKKESMDSSSAKKDGSLGYVIKGQMVD-SFEK 218

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           ++F L K+G+ + V+   +GY I             F   K +I  ++   K  +K K  
Sbjct: 219 ALFKL-KEGEVSKVVKTDYGYHIIK-----ADKETDFNSEKSNIKQKLIEEKVQKKPKLL 272

Query: 388 YKRLEEFL 395
               +E L
Sbjct: 273 TDAYKELL 280


>gi|163797530|ref|ZP_02191481.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium
           BAL199]
 gi|159177279|gb|EDP61838.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium
           BAL199]
          Length = 406

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/478 (11%), Positives = 136/478 (28%), Gaps = 99/478 (20%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
              V  + +      +  +  +      +   + +    +  L  ++L +LV      Q 
Sbjct: 16  AAVVNDEILSMRDLRSRLRMVI------VSSRLPATDETAQRLAPQVLRSLVDEQIQLQE 69

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            + + +      +    +                      R  +   ++ +    +    
Sbjct: 70  AKRLNVAVTDQDLARARSEVE------------------QRNNLKPGQFEEFVRSL---- 107

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
                          ++ Q K        V +  L  R        S   +T   ++ + 
Sbjct: 108 ---------GVDPETVIRQLKS------QVAWTKLVRRRFGNDVTISQEEVTDVLQRMEA 152

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
           +      KR+S I+  V +   + ++                               ++ 
Sbjct: 153 D-AGKTQKRVSEIVLTVDDPANEEQV-------------------------------RQL 180

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           A+   + LK G  F  +A +   S +      +G    E +    +A+++  L + G  +
Sbjct: 181 AERIVEQLKAGANFGAVARQFSASANAAVGGDVGWVLAERMA-PEIAEAVAKL-ETGQIS 238

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT--KASEKVKEDYKRLEEFLAL 397
             +   FGY I  V++ +    V       D+          A + V+   + L E L+ 
Sbjct: 239 APVRTLFGYHIVQVADSRVIAAVDPLTATVDLKQVFLPVPPNAGKDVRPSQQALAEALSG 298

Query: 398 GT----SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
                    E+++      I  P+    G+   G+    +  +   L             
Sbjct: 299 SAQNCTDFVELAKE-----IKSPVSPDLGEMKVGELAPPLRERVAGLK-------VGETT 346

Query: 454 HTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
             V LP+G  + +      P  +    E++ + ++     +     +        +E 
Sbjct: 347 GAVDLPNGVMVVMVCSRQAPPSNLPSPEQIRSQLEAQRFEILAQRYLRDLRRNAFVEL 404


>gi|167839788|ref|ZP_02466472.1| peptidylprolyl isomerase [Burkholderia thailandensis MSMB43]
          Length = 237

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 15/163 (9%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------FQSLKKGKKF 296
           E + D+ +  Y  + E++   +I     ++F        A           ++L   + F
Sbjct: 61  EPTRDDCERYYRNHAERFRRRDIVHASHILFAVTDATPLAPLRREAEAALARALAAPQTF 120

Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             LA E      +    +LG   +          ++F   + G    +++  FG+ I  +
Sbjct: 121 ETLARELSNCPSAAVGGNLGQLLRGDSV-PEFDAAVFDTPELGVLPRLVNTRFGFHIVRI 179

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
              +P   V F  V  DIA  +   +   K  + Y  +    A
Sbjct: 180 ERREPGDPVPFDAVAADIAAFLA-ERVRHKAIQQYVTILASRA 221


>gi|300214306|gb|ADJ78722.1| Foldase protein prsA [Lactobacillus salivarius CECT 5713]
          Length = 296

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 76/198 (38%), Gaps = 30/198 (15%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             S+  + + +  YK  Y              ++   + I   L      +   +I++ +
Sbjct: 68  KVSDKKVNEQYNTYKKQYGSSFDSVLAQNDMTKSSFKQEIRSNLLLKEAVKDNTKITDKQ 127

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKSLSD 309
           L+A++++ + K       TV  ++   +  A++    LK+      F +LA++     S 
Sbjct: 128 LKAQWKEYEPK------VTVAHILVSKKSTAEDIINKLKEDGSYANFKKLAKKYSTDSST 181

Query: 310 ISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            + G       + +   D +   + F L +    T  +   +GY + +  +IK       
Sbjct: 182 KNDGGKLAAFDNTDTSLDSTFKKAAFGLKQGSFTTEPVKTEYGYHVIY--SIKNPGKGKM 239

Query: 365 QEVKKDIANQMRITKASE 382
            +   ++ +Q+  +K S+
Sbjct: 240 SDHTSELKSQIIDSKMSD 257


>gi|333029339|ref|ZP_08457400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           coprosuis DSM 18011]
 gi|332739936|gb|EGJ70418.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           coprosuis DSM 18011]
          Length = 462

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 108/303 (35%), Gaps = 41/303 (13%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP------EIRTVEQLVFPNQKEA 283
           +    +     +    I ++  E++  + ++  +   P      E++ + QL   +  E 
Sbjct: 144 REGETVKMVQDKLVGDIAVTPAEVRRFF-QDLPQDSIPYIPTKVEVQIITQLPRVSLAEV 202

Query: 284 DEAFQSLKKGKK--------FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
           D+  + L++           F  LA    E+ G ++    +G   +  +     A+  F+
Sbjct: 203 DDVKKRLREYTDQVNSGEMPFSTLARLYSEDLGSAMKGGEIGFMGRGMLA-PEYANVAFN 261

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-VKKDIANQMRITKASEKVKEDYKR 390
           + + G  + ++   FGY I  +   +     +    +K  ++++  +TK++ K+      
Sbjct: 262 MQEPGKVSKIVETEFGYHIIQLVEKRGDRVNTRHILLKPKVSDE-DLTKSTNKLDSLAND 320

Query: 391 L-EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
           + +E  + G +   +S   K    +  L+          E+ A+P   ++   +   +  
Sbjct: 321 IRDEKFSFGEAALYLSDN-KETRNNSGLMPNPYDGTSRFEMQALP--PEIAKVIEKLNVG 377

Query: 450 LSKDHTVALPDGSY---MWVQIK------------ESIPARDRKLEEVLTDVKKDWKTVK 494
              +    + D        V++K            +    RD  + E    +  +W   K
Sbjct: 378 DVSNALTMIDDKGREVCAIVRLKDRIQGHKATITEDYQNLRDLVIAEKREAILHNWIVKK 437

Query: 495 TAE 497
             E
Sbjct: 438 QKE 440


>gi|149909113|ref|ZP_01897771.1| peptidyl-prolyl cis-trans isomerase C [Moritella sp. PE36]
 gi|149807864|gb|EDM67809.1| peptidyl-prolyl cis-trans isomerase C [Moritella sp. PE36]
          Length = 92

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
              T   ++  ++ + +E    ++ G  F  +A++      +     LG F    +    
Sbjct: 2   AQATARHILVDDEAKCNELKAQIEAGADFADVAKKNSNCPSAAKGGDLGKFGPGMMV-PE 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
               +FS          +   FGY +  V++ 
Sbjct: 61  FDKVVFSAPLN-TVQGPVKTQFGYHLLDVTSR 91


>gi|189425603|ref|YP_001952780.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
 gi|189421862|gb|ACD96260.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
          Length = 92

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++   + E  +    ++ G  F ++A+      S      LG+F    +      +
Sbjct: 5   TARHILVSTEAECLKLKTEIEGGADFGEVAKLNSSCPSRMRGGDLGAFGPGQMVK-EFDE 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +FS  + G     +   FGY +  V+  
Sbjct: 64  VVFS-GEIGKVLGPVRTQFGYHLIEVTKR 91


>gi|161507900|ref|YP_001577864.1| peptidylprolyl isomerase [Lactobacillus helveticus DPC 4571]
 gi|160348889|gb|ABX27563.1| PrtM precursor protein [Lactobacillus helveticus DPC 4571]
          Length = 300

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 83/240 (34%), Gaps = 30/240 (12%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +++              + L +       E +   Y              S+  + + + 
Sbjct: 41  ITQQQYYDEMKKSQAGKSALANMIINRALEQQYGKY-------------VSSKKVDKKYS 87

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSP-----EIR 270
            YK  Y +     +          ++ ++   +S   L+   + +K++            
Sbjct: 88  NYKKQYGSQFSAVLQQNGMTASTFKQNLKTNLLSEAALKHINKISKKQEQQAWKNYQPKV 147

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-----GSFSKEYIPDVSL 325
           TV+ ++   +  A+   + LK GK F  LA++     +  +         S +   D + 
Sbjct: 148 TVQHILVAKKSTAESIIKQLKDGKSFKSLAKKYSLDTATKNKAGKLPAFDSTDNTLDSAF 207

Query: 326 ADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             + F L K G+ T   +    GY +  + +  P+    F + KK I +++  + A ++ 
Sbjct: 208 KTAAFKL-KTGEVTESPVKSQSGYHVIKMIS-HPAKGK-FADHKKAIDDEIYASMAQDQA 264



 Score = 37.3 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 47/171 (27%), Gaps = 33/171 (19%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           +   ++TV S    K+    +                     +  +     K  L N++ 
Sbjct: 26  NSGNNATVASYKGGKITQQQYY--------------------DEMKKSQAGKSALANMII 65

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L+Q     G      +V     +   +  +        F + L + G+    +  + 
Sbjct: 66  NRALEQQ---YGKYVSSKKVDK---KYSNYKKQYGS----QFSAVLQQNGMTASTFKQNL 115

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
              L             + S     QA + Y    +V +I++  +      
Sbjct: 116 KTNLLSE---AALKHINKISKKQEQQAWKNYQPKVTVQHILVAKKSTAESI 163


>gi|112148583|gb|ABI13576.1| protease maturation protein precursor [Lactobacillus helveticus
           CNRZ32]
 gi|328464668|gb|EGF36014.1| peptidylprolyl isomerase [Lactobacillus helveticus MTCC 5463]
          Length = 300

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 83/240 (34%), Gaps = 30/240 (12%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +++              + L +       E +   Y              S+  + + + 
Sbjct: 41  ITQQQYYDEMKKSQAGKSALANMIINRALEQQYGKY-------------VSSKKVDKKYS 87

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSP-----EIR 270
            YK  Y +     +          ++ ++   +S   L+   + +K++            
Sbjct: 88  NYKKQYGSQFSAVLQQNGMTASTFKQNLKTNLLSEAALKHINKISKKQEQQAWKNYQPKV 147

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-----GSFSKEYIPDVSL 325
           TV+ ++   +  A+   + LK GK F  LA++     +  +         S +   D + 
Sbjct: 148 TVQHILVAKKSTAESIIKQLKDGKSFKSLAKKYSLDTATKNKAGKLPAFDSTDNTLDSAF 207

Query: 326 ADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             + F L K G+ T   +    GY +  + +  P+    F + KK I +++  + A ++ 
Sbjct: 208 KTAAFKL-KTGEVTESPVKSQSGYHVIKMIS-HPAKGK-FADHKKAIDDEIYASMAQDQA 264



 Score = 37.3 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 47/171 (27%), Gaps = 33/171 (19%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           +   ++TV S    K+    +                     +  +     K  L N++ 
Sbjct: 26  NSGNNATVASYKGGKITQQQYY--------------------DEMKKSQAGKSALANMII 65

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L+Q     G      +V     +   +  +        F + L + G+    +  + 
Sbjct: 66  NRALEQQ---YGKYVSSKKVDK---KYSNYKKQYGS----QFSAVLQQNGMTASTFKQNL 115

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
              L             + S     QA + Y    +V +I++  +      
Sbjct: 116 KTNLLSE---AALKHINKISKKQEQQAWKNYQPKVTVQHILVAKKSTAESI 163


>gi|1480131|emb|CAA68024.1| nifM [Pantoea agglomerans]
          Length = 264

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 76/246 (30%), Gaps = 36/246 (14%)

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR--HVPA 204
              +Y         +  +              L+ A     ++  V    L      +  
Sbjct: 27  TPAQYQQFIEAWQRQQVIEEAVAQAA------LEHALNIEPQSVEVTRQALAAELPELEL 80

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
            A  +  +L      ++   R  E             +++  +  + +++A Y  + + +
Sbjct: 81  TATETEELL-----LHQTLLR--EQLN--------WVQQQAPQPDDAQVEAWYRGHAQHF 125

Query: 265 FSPEIRTVEQLVFPNQ-------KEADEAFQSLKKG-KKFIQLAEEQG---KSLSDISLG 313
             PE R    L+   +       ++ D   + L+ G   F + A        ++    LG
Sbjct: 126 VRPEQRYTRHLLLTVEGNSPAVREQIDAIARRLRDGHALFARQALRYSHCPSAMGGGVLG 185

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
              +  +    L D++F L + G  +  +    G+ +     I+    +   E    +  
Sbjct: 186 WVGRGILY-PQLEDTLFRL-EAGQLSSPVETELGWHLLLCEQIRLPQPLPKAEALTRVRQ 243

Query: 374 QMRITK 379
           Q+   +
Sbjct: 244 QLIARQ 249


>gi|294672825|ref|YP_003573441.1| peptidylprolyl isomerase domain-containing protein [Prevotella
           ruminicola 23]
 gi|294471979|gb|ADE81368.1| peptidylprolyl isomerase domain protein [Prevotella ruminicola 23]
          Length = 452

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 90/284 (31%), Gaps = 39/284 (13%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAK--RFYFENRSVDYIVLNNRHVPAIADP------ 208
           + L     +        P   + +Q    + +     +D I + +  V    +       
Sbjct: 42  EALRMQSAMEGVKWSGNPDCTIPEQIAVQKLFKHQAQIDSIEVTDADVAQEVEQQISYWL 101

Query: 209 -----SNAVLTQWFEKYKDNYRA---PEYKRISYILFDVHEKEKKIEISNDELQAEYEK- 259
                S   L ++  +     RA    E K    +     +  + I ++  E++  +   
Sbjct: 102 EMVDGSRERLEEYKHQNLTQIRADLREEMKDRQMVQKMKQKLVEDIAVTPAEVRRYFSAL 161

Query: 260 -NKEKYFSPEIRTVEQLVFPNQKEADEA----------FQSLKKGKK-FIQLA----EEQ 303
                 F P    V+ +    + E +E            + + KG+  F  LA    E+ 
Sbjct: 162 PQDSLPFVPTEVEVQIVQLTPKIEQEELNRVKDELRNYTERVNKGETRFQTLAQLYSEDP 221

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           G +     LG   +  + D + A   F+L      + ++   FG+ I  +   +      
Sbjct: 222 GSARRGGELGLMGRGTL-DPAFAAVAFNLTDPKKVSKIVESEFGFHIIQLIEKRGDKV-- 278

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISR 406
              V+  +   +   ++ ++       +  +  A   S ++ + 
Sbjct: 279 --NVRHILRKPVVSQESVDRALGRLDSIAADLRAEKFSFEDAAS 320


>gi|269137453|ref|YP_003294153.1| parvulin-like peptidyl-prolyl isomerase [Edwardsiella tarda EIB202]
 gi|267983113|gb|ACY82942.1| parvulin-like peptidyl-prolyl isomerase [Edwardsiella tarda EIB202]
 gi|304557527|gb|ADM40191.1| parvulin-like peptidyl-prolyl isomerase [Edwardsiella tarda FL6-60]
          Length = 93

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 12/93 (12%)

Query: 268 EIRTVE-QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDV 323
             R     ++  +Q EA+   Q LK+G +F  LA    +  S      LG F+K  +   
Sbjct: 2   ARRAAALHILVESQAEAESLLQKLKRGAQFQTLARRHSRCPSKRQGGDLGEFTKGSMV-P 60

Query: 324 SLADSIFS---LAKKGDFTPVIHGSFGYVIAHV 353
               ++FS   L   G     I   FGY I  V
Sbjct: 61  EFDRAVFSGPLLTPIG----PIKTRFGYHIIKV 89


>gi|146281972|ref|YP_001172125.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas stutzeri A1501]
 gi|145570177|gb|ABP79283.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas stutzeri A1501]
 gi|327480218|gb|AEA83528.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas stutzeri DSM
           4166]
          Length = 93

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++   + + +E   +++ G  F Q+A+E     S      LGSF    +    
Sbjct: 2   ARATARHILVSTEAKCNELKAAIEGGADFAQVAKENSTCPSSRQGGDLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS          +   FGY +  V++ +
Sbjct: 61  FDTVVFSAPLN-VVQGPVKTQFGYHLLEVTSRQ 92


>gi|115725323|ref|XP_790053.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115958685|ref|XP_001194858.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 113

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +A EA + +K G++F  +AE+  +  +     LG  ++  +      D+
Sbjct: 21  KVRHILCEKHSKAMEALEKIKAGERFNSVAEKYSEDKARQGGDLGWMTRGSMVGP-FQDA 79

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L      K     P +    GY I  +   K
Sbjct: 80  AFALQPSSTDKPIYTDPPVKTKHGYHIIMIEGKK 113


>gi|91215922|ref|ZP_01252891.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Psychroflexus torquis ATCC 700755]
 gi|91185899|gb|EAS72273.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Psychroflexus torquis ATCC 700755]
          Length = 485

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 112/295 (37%), Gaps = 29/295 (9%)

Query: 241 EKEKKIEISNDELQAEYE---KNKEKYFSPEIRTVEQLVFPN--QKEADEAFQSLK---- 291
               ++EI+ +E +  +E   K++    + E+   + +V P   +KE       L     
Sbjct: 180 SIVDEVEITPEETRDFFEAIPKDEIPLINDEVELAQIIVRPEVGEKEQQAVIDKLNFYRD 239

Query: 292 ---KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
               G  F   A    +     S G   + ++E        D+ FSL ++G+ +      
Sbjct: 240 DVVAGGSFATKAVLYSEDRGSRSQGGKITLTREDNFVKEFKDAAFSL-QEGEVSRPFETE 298

Query: 346 FGYVIAHVSNIKPSFTVSFQEVK-----KDIANQMRITKASEKVKEDYKRL-EEFLALGT 399
           FG+ I  V  I+        +V+      +I+++  I KA ++++   K++    +    
Sbjct: 299 FGWHILTVEKIRGQQV----DVRHILLYPEISSE-AIQKAKDEIELVRKKIVNGEVDFKE 353

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK-EQLLFRVFGKDDPLSKDHTVAL 458
           +  E+S   +       L++ A  D + +     P   +Q++     +   + KD     
Sbjct: 354 AAREVSDEMETRESGGQLINNATGDRRFELTKIDPTLYDQVINLKENEVSLVIKDSEPRT 413

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKK-DWKTVKTAEEVSSKANQLVLEYSK 512
               +  + + + IP    +  +  T +++   +  K  E    KA ++   Y K
Sbjct: 414 AKIFFKVITLTKKIPEHIAEFSKDYTKIRELALQQKKLTEIKEWKAEKVTDTYVK 468


>gi|324007449|gb|EGB76668.1| PPIC-type PPIASE domain protein [Escherichia coli MS 57-2]
          Length = 117

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 33  HILVKEEKLALDLLEQIKNGADFSKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 91

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 92  SCPVL-EPTGPLHTQFGYHIIKV 113


>gi|313498575|gb|ADR59941.1| SurA domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 213

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 7/147 (4%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
              V   ++        + + L    + +  + N    +   L  + LD L+    L Q 
Sbjct: 22  AARVNGVEIGLMRLERYFSEYLDAQGRAVTSIRNPGLYKR--LRDQALDELIDKELLWQE 79

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            +  G+     +V  ++       G     S  +F  RLA  G +  +Y ++    ++  
Sbjct: 80  AQRQGIAVSDEQVSAQVGEIEAAFG-----SPALFERRLAEAGFDRAQYTEYTRHEMAAQ 134

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFEN 189
            V  +      PS   ++       E 
Sbjct: 135 QVYALLSAVDAPSQGEVEAFYDANQER 161


>gi|254585847|ref|XP_002498491.1| ZYRO0G11572p [Zygosaccharomyces rouxii]
 gi|238941385|emb|CAR29558.1| ZYRO0G11572p [Zygosaccharomyces rouxii]
          Length = 162

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQ---SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYI 320
           P     + +  P ++   E  Q    ++ G+ F  LA+E+    S      LG F K  +
Sbjct: 70  PASHRSDHITLPKEQAIQELEQLQNRIESGESFESLAKERSDCSSFKRGGDLGWFGKGEM 129

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
              +   + F L   G  + ++    G  +  
Sbjct: 130 -QPTFEKTAFHL-NVGQVSSIVESDSGVHLIK 159


>gi|120555992|ref|YP_960343.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
 gi|120325841|gb|ABM20156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
          Length = 268

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 30/186 (16%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-----------QKEADEAFQSLKKGKK 295
           + S  + +  Y  N  ++ SP I  V  ++              ++   +   +L  G+ 
Sbjct: 91  DPSEQDCERFYAANPGRFCSPTIMAVSHILLAAAPDDIEERMRQEEAGRQLLSALLDGRS 150

Query: 296 -FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F +LA++     S     SLG  SK    +      + SL  +G    +I   +G+ I 
Sbjct: 151 QFNELAKQYSACESRHQGGSLGQISKGQTVE-EFERPVLSL-NEGLHPELIESRYGWHIV 208

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            V        + ++ VK  I   +  +      ++              +  ++    + 
Sbjct: 209 RVDQRINGELLPYEHVKPQIRQYLSESVTRRAFRQY-------------LQVLAAETGVE 255

Query: 412 SIDLPL 417
            +DL L
Sbjct: 256 GVDLEL 261


>gi|296134602|ref|YP_003641844.1| SurA domain protein [Thiomonas intermedia K12]
 gi|295794724|gb|ADG29514.1| SurA domain protein [Thiomonas intermedia K12]
          Length = 459

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/477 (11%), Positives = 142/477 (29%), Gaps = 83/477 (17%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
           +       VG Q +    +    + E      +         A    L  ++L+ ++   
Sbjct: 52  TSDGIAAIVGNQVIT--DYDLQLRVEATRQQAQAAGATLPSAA---QLRSQVLNQMIDEV 106

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
            L Q+ E IG+  +   +   IA+       +NK +     S + +EG+    Y D   +
Sbjct: 107 ALAQYAEQIGMGVNQDTLDRAIAQVAS----NNKLTVPELRSAIEKEGMGWSTYRDQLKR 162

Query: 158 MLSRTDVVGMFVGGM-RPSNLLLDQAKRFYFENRSVDYIVLNNRHV--PAIADPSNAVLT 214
            +  + +    +  +   S   +D+         +      +   +  P   + + A + 
Sbjct: 163 EILISRLRERSMAQLPTVSESEIDEFLSKQDAAAASPQAAYDIAQIFLPVAQNATEAQVA 222

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                                       ++KI+  + +L+                    
Sbjct: 223 A--------------------------VKQKIDAIDAKLK-------------------- 236

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
                   A   F  L       + A+          LG      +P     D++ +L +
Sbjct: 237 --------AGADFAQLATQDSQGEGAKR------GGDLGMRPANRLP-TLFVDTVRNL-Q 280

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G  +PVI  + G+ I  +  +          ++ ++  ++ ++ +++  +   K   + 
Sbjct: 281 PGQISPVIRSAAGFHILKLLQVSGETAAPTTAMQSEVR-EIVLSASTDAQRIRAKAELDS 339

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           +A      ++   EK   +       A     G  +      + +L     + +P     
Sbjct: 340 IAQAVQNGKVQFSEKARELSQDPATAAKGGALGWVLPG--QLDPVLDAALQRLNPGDVSA 397

Query: 455 TVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
            + + +   +   +        R LE  +     ++  +  K AE+       +   
Sbjct: 398 PIVMGNKVVLLQLVDR----AVRPLEASQKRALAREVLQRQKAAEDFDELVRDVRAR 450


>gi|82931574|ref|XP_922271.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Mus musculus]
 gi|148677150|gb|EDL09097.1| mCG140299 [Mus musculus]
          Length = 131

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 39  KVRHILCEKHGKIMEAMEKLKSGMRFSEVATQYSEDKARQGGDLGWMTRGSMVGP-FQEA 97

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 98  AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131


>gi|326386746|ref|ZP_08208367.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208799|gb|EGD59595.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 467

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/471 (13%), Positives = 125/471 (26%), Gaps = 86/471 (18%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V  + +  +         L +I    G            L  ++L NL+      Q  
Sbjct: 76  AIVNGEIITGTDIDQR----LALIINANGGGNKIPAEEQERLRAQVLRNLIDETLQIQEA 131

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
           + +G+E D   V     R         + +       L   G +           ++   
Sbjct: 132 KGVGIEIDEEEVNQSFDRVA--QQNFGQ-NTAALEKYLTSIGSSAASLKRQIKGEMAWQR 188

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++                                  R+V    + S++ + +  ++ K  
Sbjct: 189 LLR---------------------------------RNVQPYINVSDSEVREMMDRMKAA 215

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
            +  E   I  I                              + E R   Q++      A
Sbjct: 216 -KGTEEYHIGEIFLSA--------------------------TDENR--SQVL----ANA 242

Query: 284 DEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           D+  + LKKG  F   A    E   +     LG      +P   LA S  ++   G    
Sbjct: 243 DKIVEQLKKGGSFTAYARQFSEASTAAVGGDLGWIRLVQLP-QELATSATTMG-PGQLAG 300

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
            I  + GY I +V + +   T    + +  I   + + + S    +     +        
Sbjct: 301 PIALAGGYSIIYVIDKRQVLT---ADARDSI---LSLKQVSITFPKGTAEKDAAAKAAEF 354

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
              +        +D          V   ++ A      L   V       +     ++ D
Sbjct: 355 AKVVKAIHGCGQVDAAATQIGASVVANDQIRARDLPVALQDTVLKLAVGEATPPFGSIED 414

Query: 461 GSYMWVQIKESIP--ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
           G  + +      P        E++ + ++ D    +    +       V+E
Sbjct: 415 GVRVLMLCGRDDPKVENGPSFEQLQSQIEDDRVNKRAQTYLRDLRRDAVIE 465


>gi|23015619|ref|ZP_00055390.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 421

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/418 (11%), Positives = 117/418 (27%), Gaps = 104/418 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V  + +         K  L +    +   + S R        ++L  +V     
Sbjct: 28  DRIAAVVNDEIISIRDLDARLK--LAITVSGLPDNIESRRRAVP----QVLRKMVDERIQ 81

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q    + + A    V   +A                      +  +             
Sbjct: 82  AQEAARLKVSAGTEDVARGLANVE------------------NQNRMPPGS--------- 114

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
               ++          + + DQ +        + ++ L  R +          +T+  E 
Sbjct: 115 ----LLTSLAKAGVDPDAVKDQIRA------DIIWVKLIMRSLQPTIKVGEDEITERLET 164

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            +  +  PE+      L     ++++                                 +
Sbjct: 165 IRQQFGQPEFMLAEIFLPVDSPRQEE--------------------------------ES 192

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           ++  +   + L+ G  F  LA +    G + +   LG  S   + D  + D++ S+  KG
Sbjct: 193 KRLGERLIEQLRAGAPFQALARQFSQSGSASNGGVLGWLSPSTLED-EVRDTVMSM-NKG 250

Query: 337 DFTPVIHGSFGYVIAHVSNIK---------------------PSFTVSFQEVKKDIANQM 375
             + +I    GY I  + + +                     P       ++ +  A   
Sbjct: 251 QVSSLIRTGSGYAILALIDKRVAGETFVGDPLLSIVQVFFPIPPGAPPISQLIEKAAELT 310

Query: 376 RITKASEKVKEDYKRLEEFLAL---GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
              K+  ++++  ++L    +    G ++  + +  + +  +LP+   +     G  +
Sbjct: 311 APLKSCPELEDMGRKLNSEQSGRRDGVTLSVMPQNLRSLVTNLPINKASPPVSTGNAL 368


>gi|237800457|ref|ZP_04588918.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331023316|gb|EGI03373.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 93

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++  ++++ +E    ++ G  F ++A+      S      LGSF    +       
Sbjct: 5   TARHILVSSEEKCNELKAQIEGGADFAEIAKANSSCPSSRQGGDLGSFGPGQMVK-EFDT 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +FS A        +   FGY +  V++ +
Sbjct: 64  VVFS-APVNTVQGPVKTQFGYHLLEVTSRQ 92


>gi|45361247|ref|NP_989201.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Xenopus
           (Silurana) tropicalis]
 gi|82202394|sp|Q6P4K8|PIN4_XENTR RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4; AltName: Full=Parvulin-14; Short=Par14; AltName:
           Full=Peptidyl-prolyl cis-trans isomerase Pin4;
           Short=PPIase Pin4; AltName: Full=Rotamase Pin4
 gi|38648988|gb|AAH63359.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Xenopus (Silurana) tropicalis]
          Length = 127

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      D+
Sbjct: 35  KVRHILCEKHGKVMEAMEKLKSGVRFSEVATQYSEDKARQGGDLGWMTRGSMVGP-FQDA 93

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L      K     P +   FGY I  V   K
Sbjct: 94  AFALPVSTMDKPVYTDPPVKTKFGYHIIMVEGRK 127


>gi|306815185|ref|ZP_07449338.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli NC101]
 gi|305851554|gb|EFM52008.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli NC101]
          Length = 93

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQIKNGADFSKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 68  SCPVL-EPTGPLHTQFGYHIIKV 89


>gi|126662091|ref|ZP_01733090.1| peptidyl-prolyl cis-trans isomerase (survival protein)
           [Flavobacteria bacterium BAL38]
 gi|126625470|gb|EAZ96159.1| peptidyl-prolyl cis-trans isomerase (survival protein)
           [Flavobacteria bacterium BAL38]
          Length = 451

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/371 (12%), Positives = 117/371 (31%), Gaps = 54/371 (14%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
                +  ++  ++    F  E        + +          + V+  + +K  +  R+
Sbjct: 82  AIQDSIIVTDAEVN---SFLNEQLDAAVEQIGSI---------DKVVKYYNKKNVEELRS 129

Query: 227 PEYKRISYILFDVHEKEK---KIEISNDELQAEYEKNKEKY--FSPEIRTVEQLVF---- 277
             +  +         ++K    +EI+ +E++  ++               V Q+V     
Sbjct: 130 HFFDAVKMNKLTDQMQKKILESVEITPEEVRNFFKGIPADEIPTFGAEMEVAQIVVNPVV 189

Query: 278 -PNQKEA-----DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF---SKEYIPDVSLADS 328
             ++K+      +E  Q +  G  F   A    +     S G F   +++        D 
Sbjct: 190 GEDEKKRVIDKLNEIRQDVINGSSFFSKAVLFSEDPGSSSNGGFYKMNRKTAFVKEFKDV 249

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
            FSLA+ G+ +      FGY I  V  IK        E++  + +     +A +  KE  
Sbjct: 250 AFSLAE-GEISEPFETEFGYHIIKVEKIKGQEV----ELRHILISPKVSIQAMKDAKEKI 304

Query: 389 KRLEEFLALGT-SMDEISRREKIVSID-------------LPLVDFAGKDVKGKEVAAIP 434
           +++   +     S  + ++                      P  +    D       +  
Sbjct: 305 EQIRNKIINNEISFSDAAKSSSDQKETRNNGGVLLNPRTMEPRFELTKMDPTLYAQVSSL 364

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
              ++   +  ++    K + +   +      +I+E      R   ++     +D +  +
Sbjct: 365 KDNEISLPILDEERGAGKFYKIITVNN-----RIEEHQADFSRDYIKIKELALRDKQIKE 419

Query: 495 TAEEVSSKANQ 505
            A+    K  +
Sbjct: 420 IAKWTEEKIKE 430


>gi|197117512|ref|YP_002137939.1| hypothetical protein Gbem_1123 [Geobacter bemidjiensis Bem]
 gi|197086872|gb|ACH38143.1| conserved hypothetical protein [Geobacter bemidjiensis Bem]
          Length = 613

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 82/207 (39%), Gaps = 20/207 (9%)

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
           V     +    D S   L +  E +K          + +  F     +  +  +  E++ 
Sbjct: 409 VFKKAALEKGLDKSEEYLKR-IEDHKT--------TVLFGAFIEKVIKPDVTFTVAEIKD 459

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL-------AEEQGKSLS 308
            YEK+  +Y +PE   ++ + F  + +A +A   L++G  F  L         +  + L 
Sbjct: 460 YYEKHISEYAAPEKMQIQGIAFTKKDDAQKAIDKLREGVDFAWLRNNADGQVAKNARDLL 519

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY-VIAHVSNIKPSFTVSFQEV 367
             +  + + + +P+      +   A KGD+  +     GY     V   + +     +EV
Sbjct: 520 QFNEEALTLQSMPEP--MQKVLKDAHKGDY-RLYESPEGYSYALFVKEKEEAKARPLEEV 576

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEF 394
           K ++  ++     ++ +++ +K+L E 
Sbjct: 577 KDEVGQKVAWLNLTQDIEKWFKKLREA 603



 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 165/482 (34%), Gaps = 87/482 (18%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF------------SPE 268
           K N+  P  + I+  L     K  +++   DE+++  EK  ++               P+
Sbjct: 130 KKNFMEPLERLINVKLVVQEAKNMELD-RQDEIKSNLEKFADQQLRQVLFLERVKDIKPD 188

Query: 269 IRTVEQ-------------LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
            R V++             L+F     A    + LK GKKF +L ++  K     + G  
Sbjct: 189 ERKVQKEYRDTIKEMKLKSLIFKKDTVAKAFIEELKHGKKFDELRDKALKDGKAETAGQD 248

Query: 316 SKEYIPDVSLA---DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS-FQEVKKDI 371
            ++Y  + +L     +  +  K G  +P+I    G+++A V  I+     +  ++ +  +
Sbjct: 249 EQQYATNAALGPVVSAGLADVKAGGISPIIEIMNGFLVAKVEEIRYVDNPAGLEQARSKV 308

Query: 372 ANQMRITKASEKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
            +QM++        E  K+  +E   L  S+D  +++       L         +KG+E 
Sbjct: 309 LSQMKLDSLKAYKAELVKKYAKENTKLVKSLDFEAKKPGFE--KLLTDKRVVMSIKGEEP 366

Query: 431 AAIPYKEQLLFRVFG-------KDDPLSKDHTVALPDGSYMWV----------------- 466
             +    + L   F        K+  L+++  +AL +   + V                 
Sbjct: 367 IRVSDLAEALNSKFFHGIDNAIKEKKLNREKLLALDELESVRVFKKAALEKGLDKSEEYL 426

Query: 467 -QIKES--------------IPARDRKLEEVLTDVKKDWKTVKTAEEV--------SSKA 503
            +I++                P     + E+    +K        E++            
Sbjct: 427 KRIEDHKTTVLFGAFIEKVIKPDVTFTVAEIKDYYEKHISEYAAPEKMQIQGIAFTKKDD 486

Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTN----QINRMDNENKFFGYDGISQVFSGPVEM 559
            Q  ++  +EG +F  +  N    +        Q N      +         +       
Sbjct: 487 AQKAIDKLREGVDFAWLRNNADGQVAKNARDLLQFNEEALTLQSMPEPMQKVLKDAHKGD 546

Query: 560 VKCFPIENGLSYVVF--KVTNSKVGPVQE-KDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
            + +    G SY +F  +   +K  P++E KD+    +  +     ++     L+  Y V
Sbjct: 547 YRLYESPEGYSYALFVKEKEEAKARPLEEVKDEVGQKVAWLNLTQDIEKWFKKLREAYPV 606

Query: 617 TV 618
            +
Sbjct: 607 KI 608


>gi|88801073|ref|ZP_01116621.1| peptidyl-prolyl cis-trans isomerase C [Reinekea sp. MED297]
 gi|88776212|gb|EAR07439.1| peptidyl-prolyl cis-trans isomerase C [Reinekea sp. MED297]
          Length = 94

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
              ++   ++EA++    L++G+ F +LA        +     LG F +  +      D 
Sbjct: 8   ARHILVKTREEAEKLKARLQRGEDFAKLARRYSTCPSAKKGGDLGEFRRGQMAKP-FDDV 66

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAH 352
           +F  A+  +    +   FG+ +  
Sbjct: 67  VFKKAEL-EIHGPVKTRFGFHLIQ 89


>gi|326795759|ref|YP_004313579.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas
           mediterranea MMB-1]
 gi|326546523|gb|ADZ91743.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas
           mediterranea MMB-1]
          Length = 92

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++ EA++  + L KG+ F +LA++     S      LG F K  +   +   + F
Sbjct: 8   HILVKSKAEAEQLKERLDKGEDFHKLAKKHSLCPSGKRGGDLGEFRKGEMV-SAFDRAAF 66

Query: 331 SLAKKG---DFTPVIHGSFGYVIAHV 353
               KG        +   FG+ +  V
Sbjct: 67  ----KGPLLAVQGPVKTQFGFHLIKV 88


>gi|220928200|ref|YP_002505109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulolyticum H10]
 gi|219998528|gb|ACL75129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulolyticum H10]
          Length = 347

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/406 (14%), Positives = 122/406 (30%), Gaps = 88/406 (21%)

Query: 15  KIFLVVLFVPFLIWGL-------SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
           K    ++ V  ++  +       +    + +  + V  VG  K+    +    +  + MI
Sbjct: 4   KFVNALITVAMVLTSIIPASNTFAATAKTATPETHVAKVGTDKISKEEYNFFLRDAISMI 63

Query: 68  SQKIGF------VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                          ++   S    K  LDN+V         +D  +             
Sbjct: 64  QSYFNSYNVDWNAKINDMKASEYAKKIALDNIVDFKIQLSKAKDAKITLTKNE------- 116

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
              F+G     + + +++ LA      K+  +                     +   L Q
Sbjct: 117 MDEFNG-----NMNSYLNSLAS---TTKDQENIIKNE----------------TGFTLAQ 152

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
            K FY     V              + ++  L +++   K+ +       + +ILF   +
Sbjct: 153 FKSFYNNVYIVRKF---ASETQKKFNCTDTELKKYYNSNKNLFY---KVVVGHILFLTTD 206

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
           +  +             K + +       T+ ++  PN                F  L +
Sbjct: 207 ENNQSTP----------KKEAEAKKKAEETLLKINSPN--------------SDFAALVK 242

Query: 302 EQGKSLSDISLGSFSKEYIPD-----VSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           E  +       G   K  + +         + ++    K GD T +I  S+G+ +  +  
Sbjct: 243 ELSEDPGSKETG--GKYTVMNNNQFVPEFQNWAVNPSRKVGD-TGIIKTSYGFHVMKLMK 299

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           I      SF ++K DI +   I K  + +    K  +  +    S+
Sbjct: 300 IY-----SFNQLKSDIKSSYIIKKYDDNLSAWRKDKKYKVVKNESV 340


>gi|253735279|ref|ZP_04869444.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253726686|gb|EES95415.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 320

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 47/198 (23%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +KYK+N R   Y +             KI+IS+ E++             + +    ++ 
Sbjct: 110 DKYKENLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 149

Query: 278 P-----------NQKEADEAFQSLKK-----GKKFIQLAEEQ----GKSLSDISLGSFSK 317
                       + KEA +  + ++K       KF ++A+++    G +  D  LG   K
Sbjct: 150 KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLK 209

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
               D     ++F L K G+ + V+  SFGY +             F   K+ +  ++  
Sbjct: 210 GQT-DKDFEKALFKL-KDGEVSEVVKSSFGYHVIK-----ADKPTDFNSEKQSLKEKLVD 262

Query: 378 TKASEKVKEDYKRLEEFL 395
            K  +  K      ++ L
Sbjct: 263 QKVQKNPKLLTDAYKDLL 280


>gi|187478286|ref|YP_786310.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N]
 gi|115422872|emb|CAJ49400.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N]
          Length = 93

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              +   ++   +  A E   +++ G  F ++A E     S      LG+F    +    
Sbjct: 2   AQASARHILVSTEARAQELKTAIQNGADFAEVARENSSCPSARQGGDLGTFGPGEMV-RE 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A   +    +   FGY +  V++ +
Sbjct: 61  FDQVVFS-APVNEVQGPVKTQFGYHLVEVTSRR 92


>gi|70730194|ref|YP_259933.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Pseudomonas fluorescens Pf-5]
 gi|68344493|gb|AAY92099.1| PPIC-type PPIASE domain protein [Pseudomonas fluorescens Pf-5]
          Length = 318

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 78/249 (31%), Gaps = 33/249 (13%)

Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
           +   N           L+   V+             ++Q  R   E       + +   V
Sbjct: 78  QLRGNRPALEAWIRSRLAEKAVLEQADAQGWRQRPEVEQQTRAATEQIVFRDYLQSVSQV 137

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
           PA   PS A L Q ++  K  +  P   R+S I   V E +   ++              
Sbjct: 138 PADY-PSPAELQQAYDSGKSAWMTPPLYRVSQIFLGVAEPQAAEQV-------------- 182

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
                  R  ++L    Q    E          F  LA +  +       G  S      
Sbjct: 183 ------RRQAQELSRKAQAAPGE----------FAALAAQYSQDRDSAQRGGDSGLQPLQ 226

Query: 323 VSLAD--SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
             L +  S  +  K G  + V+  + G+ +  ++  +P+ T S  E++  +   +R  + 
Sbjct: 227 QLLPEVRSAVARLKVGGVSEVVQSAAGFHVLKLTEQQPARTASLDELRDRLTQALRAQRQ 286

Query: 381 SEKVKEDYK 389
            +  K   +
Sbjct: 287 EQIAKAYLE 295



 Score = 37.7 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN-QINRMDNENKFFGYDGISQV 552
           + AE+V  +A +L  +       F  +         +     +      +    +  S V
Sbjct: 177 QAAEQVRRQAQELSRKAQAAPGEFAALAAQYSQDRDSAQRGGDSGLQPLQQLLPEVRSAV 236

Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIA 608
               V  V    +++   + V K+T  +       D+    LTQ +     + +  + + 
Sbjct: 237 ARLKVGGVSEV-VQSAAGFHVLKLTEQQPARTASLDELRDRLTQALRAQRQEQIAKAYLE 295

Query: 609 YLKSQYSVTVHDNLIQRYLD 628
            + +  ++++   ++ + L+
Sbjct: 296 GMLNTATLSIDGAVLNQVLE 315


>gi|251795790|ref|YP_003010521.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
 gi|247543416|gb|ACT00435.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
          Length = 343

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/394 (15%), Positives = 119/394 (30%), Gaps = 85/394 (21%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           W+A   L++      +        S SGS  + +VG Q +    F     +  G ++   
Sbjct: 3   WIAGGVLLLASAGLAVAWPQPTGGSPSGSEAIATVGGQPISLDEFRLYMDKAKGEVTNYF 62

Query: 72  GFVVNSERARSVG------------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
                +E  +               L K+ + + V G TL     + GL           
Sbjct: 63  SVTYGAEDRKDYWTSAFGGERPIDRLKKQAMKDAVEGKTLQLLAVENGLAES-------- 114

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
                F      ++ +                     K L +   +              
Sbjct: 115 ---SSFADFTRNWNDNN----------------QSRAKDLKQGKAIYGLGEY-------- 147

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
               +FYF + S   + L  +        ++  L   ++ +   +      +++Y     
Sbjct: 148 -DLSQFYFYSISNLKLDLAEKLGERELKVTDQELLDRYQSH-AEFAG--QTQLTYKELS- 202

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                 I   + E +  Y                       K+  EA Q LK G  F + 
Sbjct: 203 ------IPFGDGEREQAY-----------------------KQITEAQQELKAGLSFEEA 233

Query: 300 AE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A+   E G   + + +G        D  L  +   L + G+++PV+    G+ I  + N 
Sbjct: 234 AKKYTENGLRDNTVIIGGQDSPLQADAVLKQAAARL-EIGEYSPVLDCGSGFSIIRLVNR 292

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
             +F+V    VK  +  ++   K    + +  K+
Sbjct: 293 TDNFSVPLDSVKAQLQEEVLQLKFQAYLADQVKK 326



 Score = 38.8 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 48/133 (36%), Gaps = 8/133 (6%)

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
            E+  +     ++ L  G S +E +++     +    V   G+D     + A    +Q  
Sbjct: 210 REQAYKQITEAQQELKAGLSFEEAAKKYTENGLRDNTVIIGGQD---SPLQADAVLKQAA 266

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            R+      + +   V      +  +++          L+ V   ++++   +K    ++
Sbjct: 267 ARL-----EIGEYSPVLDCGSGFSIIRLVNRTDNFSVPLDSVKAQLQEEVLQLKFQAYLA 321

Query: 501 SKANQLVLEYSKE 513
            +  +  ++  ++
Sbjct: 322 DQVKKRNVQIKQD 334


>gi|83815316|ref|YP_446773.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Salinibacter ruber DSM 13855]
 gi|83756710|gb|ABC44823.1| PPIC-type PPIASE domain protein [Salinibacter ruber DSM 13855]
          Length = 342

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 87/278 (31%), Gaps = 45/278 (16%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVP 203
           ++ + Y       + R            PS    DQ +  + +          L      
Sbjct: 63  LSAQRYQQQVRMSMKRQ----------APSQQSEDQMQETHRQLIRGFARQHALRGEAKA 112

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE--------LQA 255
              +     +    EK K  Y + E  +      ++     +  +++          +  
Sbjct: 113 QNLEVDPTQVNARLEKLKQRYESEEQFQKQLARNNMTVDSVRSLLADQFRQQQLQRQMAE 172

Query: 256 EYEK----NKEKYFSPEIR-TVEQLVFPNQKEADE--------AFQSLKKGK-----KFI 297
            YE+    +   Y     R   + ++    + A E        A  +L          F 
Sbjct: 173 NYEEPSSDDVTAYSEKNRRIRAQHILIKAGENAPESEVDSARKAAAALVDSAKMEDVDFA 232

Query: 298 QLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHV 353
           +LA        +     LG F+++ + D   A++ ++L+  GD  P  +   FG+ +  +
Sbjct: 233 ELARRHSQGPSAQKGGDLGFFTRDRMVD-KFAEAAYALSDSGDVAPEPVRTRFGFHVIRL 291

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +N       +  + +K +  + R     +++    +  
Sbjct: 292 TNAGEPMDTT--KARKQMTKERRQQAVEDQINALLEDA 327


>gi|310791533|gb|EFQ27060.1| ppic-type ppiase domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 146

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA   L+ G KF ++A E  +  +    SLG  +K  + D    D  
Sbjct: 44  VRHILCEKHAKKEEALAKLRDGTKFDEVAREFSEDKARQGGSLGWKTKGSL-DPKFEDVA 102

Query: 330 FSLAKKGDFTPVI---HGSFGYVIAHV 353
           F+L+     +PV       FGY I  V
Sbjct: 103 FALSTSTTASPVYGEAKTEFGYHIIMV 129


>gi|73540204|ref|YP_294724.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
 gi|121956447|sp|Q475Q3|SURA_RALEJ RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|72117617|gb|AAZ59880.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
          Length = 499

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/322 (13%), Positives = 95/322 (29%), Gaps = 73/322 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +     ++   +    +           RA  +G   ++L+ L+     
Sbjct: 83  DEVVAVVNNSVITRRELLDRADEIEAQLRTANRPA--PPRADLLG---EVLERLIMERVQ 137

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +D G++     +   I        + N+ S      R+   G+   +Y D   K  
Sbjct: 138 TQAAQDAGIKVTDQELDRAIESV----AQQNRLSATELRRRVEASGMTWTKYRDELRKQ- 192

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                                           V  I L  R V +     +  +  +   
Sbjct: 193 --------------------------------VQVIRLREREVDSKVQVYDGEIDNY--- 217

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                       ++             E +  ++     +N       E+          
Sbjct: 218 ------------LAARGGQGAAATGPTEFNVSQILVRVPENASDAQKQEL---------- 255

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           QK+A++  +  + G  F QLA+   +   +    ++G      +P +  A+++  L + G
Sbjct: 256 QKKAEQLLKQAQGGADFAQLAQANSQGPEAAQGGAIGFREIGRLPAL-FANAVVDL-QPG 313

Query: 337 DFTP-VIHGSFGYVIAHVSNIK 357
              P V+  + G+ I  ++  +
Sbjct: 314 AVAPEVVESANGFHILKLTAKR 335


>gi|87122616|ref|ZP_01078493.1| peptidyl-prolyl cis-trans isomerase C [Marinomonas sp. MED121]
 gi|86162074|gb|EAQ63362.1| peptidyl-prolyl cis-trans isomerase C [Marinomonas sp. MED121]
          Length = 92

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIF 330
            ++  ++ E ++    L KG  F QLA++      +     LG F K  +   +   ++F
Sbjct: 8   HILTKSKAECEKVKALLDKGGDFHQLAKKYSTCPSAKKGGDLGEFRKGDMVK-AFDKAVF 66

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           +  L K       I   FG+ +  V
Sbjct: 67  NGPLLK---VQGPIKTQFGFHLIKV 88


>gi|71065176|ref|YP_263903.1| peptidyl-prolyl cis-trans isomerase [Psychrobacter arcticus 273-4]
 gi|71038161|gb|AAZ18469.1| possible peptidyl-prolyl cis-trans isomerase [Psychrobacter
           arcticus 273-4]
          Length = 343

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 94/258 (36%), Gaps = 34/258 (13%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-----IADPSNAVLT 214
           SR ++  + V G+      + Q  +++      D + L  + +       +A  S++ L 
Sbjct: 79  SRDELPSVLVNGVMIDRTAIAQELQYHPAENKEDAVFLATQALVVRELLRLAVLSDSSLG 138

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           +        +   E K IS ++    +  K    +N   +  YE+N   + +  I +   
Sbjct: 139 E------SAWDEDEEKAISSLI---DKNVKATTPNNAICERYYEQNITDFMTDPIMSARH 189

Query: 275 LVFP-----------NQKEADEAFQSLKKG----KKFIQLAEEQGKSLS---DISLGSFS 316
           ++              +K A +  + +          I+LA +     S      LG  S
Sbjct: 190 ILLACLPEDGDERLKLKKTAYDLIEQINADSNSTAALIELARQHSACPSKEQGGDLGVIS 249

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           K          ++F L + G     I   +G+ I  V N +P   +++++V   IAN++ 
Sbjct: 250 KGQTV-PEFESTLFKL-ETGIAPSPIESRYGFHIVEVLNKQPGIQMNYEQVSAAIANKLS 307

Query: 377 ITKASEKVKEDYKRLEEF 394
                + + +    L + 
Sbjct: 308 QQAFHQSLCDYLFTLTDE 325


>gi|134291084|ref|YP_001114853.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
 gi|134134273|gb|ABO58598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
          Length = 262

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 58/205 (28%), Gaps = 34/205 (16%)

Query: 229 YKRISYILFDVHEKEKKIEISN--------------DELQAEYEKNKEKYFSPEIRTVEQ 274
            + ++  L D         +                 + +  Y ++  ++   +I     
Sbjct: 54  QRAVALALIDASAPLDDAAVDALLERELTHVPQPDRADCERYYSRHAARFRRGDIVYASH 113

Query: 275 LVFPN---------QKEADEAFQS-LKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIP 321
           ++F           ++ A  A    L     F  +A        +    +LG   +    
Sbjct: 114 VLFAVTERVPLAPLRERAQAALADVLAAPDTFEAVARASSNCPSAQVGGNLGQLLRGDTV 173

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI---T 378
                 ++F     G    +++  FG+ I  +    P   V F E    IA  +      
Sbjct: 174 -PEFEAALFDGDALGVLPKLVNTRFGFHIVRIERRVPGAAVPFDEAAGQIAEYLAQCVRQ 232

Query: 379 KASEKVKED---YKRLEEFLALGTS 400
           +A  +         R+E     G S
Sbjct: 233 RAMRQYVAVLAGAARIEGVAFDGAS 257


>gi|198425666|ref|XP_002128194.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase
           NIMA-interacting 4 (Rotamase Pin4) (PPIase Pin4)
           (Parvulin 14) (hPar14) (Par14) (Peptidyl-prolyl
           cis/trans isomerase EPVH) [Ciona intestinalis]
          Length = 128

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + +K G KF ++A++  +    S   LG   +  +      ++
Sbjct: 36  KVRHILCEKHSKCMEAMEKIKAGMKFNEVAQQYSEDKARSGGDLGWMIRGSMVGP-FQEA 94

Query: 329 IFSLAKKGDFTP-----VIHGSFGYVIAHVSNIK 357
            F+L      +P      +   FGY I  V   K
Sbjct: 95  AFALPVSSLASPKYTDPPVKTKFGYHIIMVEGKK 128


>gi|153873081|ref|ZP_02001781.1| survival protein SurA [Beggiatoa sp. PS]
 gi|152070452|gb|EDN68218.1| survival protein SurA [Beggiatoa sp. PS]
          Length = 328

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 96/310 (30%), Gaps = 38/310 (12%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-- 279
             +R    +++            +I I++ E++       ++        +  ++     
Sbjct: 18  KQWREQARQQLMVERLQQRYVMNRITITDREIENFLATQTQQGTISNEYHILHILIATPE 77

Query: 280 ----------QKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLA 326
                     Q++A+E    LK+G  F   A    +  ++L    LG      +P  +L 
Sbjct: 78  APSPENITLKQQKAEEVVAKLKQGADFEATAVAISDSRQALDGGDLGWLKAGEMP--TLF 135

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           D + +  K  +    +  S G+ I  +   +                +  + K +E + +
Sbjct: 136 DGVVNQMKVDEIKGPLRDSSGFHIIKLVEKRGGKI-----AITQTKARHILMKTNELMSD 190

Query: 387 -----DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA-AIPYKEQLL 440
                  K ++  + LG    +++             +  G   KG  +    P      
Sbjct: 191 VEIEFRLKEIKSRIELGDDFAKLAEAY---------SEDTGSAAKGGSLGWVNPGDLATE 241

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
           F     D  ++K          +  VQ+ E     D   + +     +     K  EE+ 
Sbjct: 242 FEAVMNDLSVNKVSDPFKSRFGWHIVQVLERR-QHDNTEQALRYQAARQIHQRKVYEELE 300

Query: 501 SKANQLVLEY 510
           +   QL  + 
Sbjct: 301 AWLRQLRDQA 310



 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 51/151 (33%), Gaps = 16/151 (10%)

Query: 269 IRTVEQLVFPNQK---------EADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSF 315
                 ++    +            E    ++ G  F +LAE    + G +    SLG  
Sbjct: 174 QTKARHILMKTNELMSDVEIEFRLKEIKSRIELGDDFAKLAEAYSEDTGSAAKGGSLGWV 233

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           +   +   +  +++ +       +      FG+ I  V   +       Q ++   A Q+
Sbjct: 234 NPGDL--ATEFEAVMNDLSVNKVSDPFKSRFGWHIVQVLERRQHDNTE-QALRYQAARQI 290

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISR 406
              K  E+++   ++L +   +   +  ++ 
Sbjct: 291 HQRKVYEELEAWLRQLRDQAYIDYRIANLAD 321


>gi|49073566|gb|AAT49329.1| PA4176 [synthetic construct]
          Length = 94

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  ++ + +E   +++ G  F ++A E     S     +LGSF    +    
Sbjct: 2   ARATARHILVSSEAKCNELKTAIEGGADFAEVAREHSSCPSGRDGGNLGSFGPGQMV-RE 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
               +FS          +   FGY +  V++ +  
Sbjct: 61  FDQVVFSAPLN-VVQGPVKTQFGYHLLEVTSRQDG 94


>gi|323466054|gb|ADX69741.1| Foldase protein prsA 1 [Lactobacillus helveticus H10]
          Length = 306

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 83/241 (34%), Gaps = 32/241 (13%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +++              + L +       E +   Y              S+  + + + 
Sbjct: 47  ITQQQYYDEMKKSQAGKSALANMIINRALEQQYGKY-------------VSSKKVDKQYN 93

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQ------AEYEKNKEKYFSPEI 269
            YK  Y +     +          ++ ++   +S   L+       + E+   K + P  
Sbjct: 94  NYKKQYGSQFSAVLQQNGMTASTFKQNLKTNLLSEAALKHIKKISKKQEQQAWKNYQP-K 152

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-----GSFSKEYIPDVS 324
            TV+ ++   +  A+   + LK GK F  LA++     +  +         S +   D +
Sbjct: 153 VTVQHILVAKKSTAESIIKQLKDGKSFKSLAKKYSLDTATKNKAGKLPAFDSTDNTLDSA 212

Query: 325 LADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              + F L K G+ T        GY +  + +  P+    F + KK I +++  + A ++
Sbjct: 213 FKTAAFKL-KTGEVTESPAKSQSGYHVIKMIS-HPAKGK-FADHKKAIDDEIYASMAQDQ 269

Query: 384 V 384
            
Sbjct: 270 A 270



 Score = 37.3 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 47/171 (27%), Gaps = 33/171 (19%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           +   ++TV S    K+    +                     +  +     K  L N++ 
Sbjct: 32  NSGNNATVASYKGGKITQQQYY--------------------DEMKKSQAGKSALANMII 71

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L+Q     G      +V     +   +  +        F + L + G+    +  + 
Sbjct: 72  NRALEQQ---YGKYVSSKKVDK---QYNNYKKQYGS----QFSAVLQQNGMTASTFKQNL 121

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
              L             + S     QA + Y    +V +I++  +      
Sbjct: 122 KTNLLSE---AALKHIKKISKKQEQQAWKNYQPKVTVQHILVAKKSTAESI 169


>gi|148225514|ref|NP_001084775.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Xenopus laevis]
 gi|47125169|gb|AAH70686.1| MGC83096 protein [Xenopus laevis]
          Length = 127

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      D+
Sbjct: 35  KVRHILCEKHGKVMEAMEKLKSGVRFSEVATQYSEDKARQGGDLGWMTRGSMVGP-FQDA 93

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L+     K     P +   FGY I  V   K
Sbjct: 94  AFALSVSTMDKPVYTDPPVKTKFGYHIIMVEGRK 127


>gi|330875454|gb|EGH09603.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 93

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++  ++ + +E    ++ G  F ++A+      S      LGSF    +       
Sbjct: 5   TARHILVSSEDKCNELKAQIEGGADFAEVAKANSSCPSSRQGGDLGSFGPGQMVK-EFDT 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +FS A        +   FGY +  V++ +
Sbjct: 64  VVFS-APVNTVQGPVKTQFGYHLLEVTSRQ 92


>gi|330830348|ref|YP_004393300.1| peptidyl-prolyl cis-trans isomerase C [Aeromonas veronii B565]
 gi|328805484|gb|AEB50683.1| Peptidyl-prolyl cis-trans isomerase C [Aeromonas veronii B565]
          Length = 92

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
            + ++   +K+  E  + ++KG  F Q+A+      S      LG F+K  +      D+
Sbjct: 6   AQHILVKTEKQCLEIKEKIEKGADFGQMAKRFSTCASAKRSGDLGEFNKGDMVKP-FDDA 64

Query: 329 IFSLAKKGD---FTPVIHGSFGYVIAHV 353
           +F    KG+       +   FG+ +  V
Sbjct: 65  VF----KGELLKVLGPVRTKFGFHLIKV 88


>gi|237727901|ref|ZP_04558382.1| peptidyl-prolyl cis-trans isomerase C [Citrobacter sp. 30_2]
 gi|226910350|gb|EEH96268.1| peptidyl-prolyl cis-trans isomerase C [Citrobacter sp. 30_2]
          Length = 93

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++   +K A +  + +K G  F +LA++     S      LG F +  +   +   
Sbjct: 6   AAVHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDK 64

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHV 353
            +FS     + T  +H  FGY I  V
Sbjct: 65  VVFSCPVL-EPTGPLHTQFGYHIIKV 89


>gi|159897379|ref|YP_001543626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890418|gb|ABX03498.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 315

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 67/219 (30%), Gaps = 40/219 (18%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            + L    ++   +  +  S  L         E        +          P+ A    
Sbjct: 69  RQQLLDQMILQKVI--LEESAKLGAGIDSVSAEQ-----TTMMIDQAVGKEKPTYADYEA 121

Query: 216 WFEKYKDNYRAPEYKRISYI-LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           + ++    +   E  R     +       +K+E+                 +     +  
Sbjct: 122 FAKEN--RFGTVESMRAYVAQILTYESYAQKLEVP---------------SATPQFHLFH 164

Query: 275 LVFPNQ--------KEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPD 322
           ++  +         ++A++    LK G+ F  LA++             LG +++E    
Sbjct: 165 ILLSSDTVSESVALEQANQVLAQLKTGEDFSILAQQYSADPGSGSNGGDLGWYTQEQYAG 224

Query: 323 --VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
                A ++ +L + G  +  +   FGY I  ++  + +
Sbjct: 225 FVPEFAAALNTL-EIGQLSEPVKTQFGYHIIKITESRNA 262



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 74/219 (33%), Gaps = 31/219 (14%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
           +R+ ++     + L ++    ++ G    + + S S  +V VG   +  + F        
Sbjct: 1   MRRHAQ----WLLLCLVIA--ILAGCGSEI-TTSQSKVLVEVGNSSITEAEFTTFLDLNS 53

Query: 65  GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL---EADHGRVWGEI-- 119
            +I+Q      N+    +    +++LD ++    + +    +G         +    I  
Sbjct: 54  NIINQ------NASGLDANTTRQQLLDQMILQKVILEESAKLGAGIDSVSAEQTTMMIDQ 107

Query: 120 ---------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD--VVGMF 168
                    A    F  ++   + +   + +A+  +  + Y        +     +  + 
Sbjct: 108 AVGKEKPTYADYEAFAKENRFGTVESMRAYVAQI-LTYESYAQKLEVPSATPQFHLFHIL 166

Query: 169 VGGMRPSNLL-LDQAKRFYFENRSVDYIVLNNRHVPAIA 206
           +     S  + L+QA +   + ++ +   +  +   A  
Sbjct: 167 LSSDTVSESVALEQANQVLAQLKTGEDFSILAQQYSADP 205


>gi|88857682|ref|ZP_01132325.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas tunicata D2]
 gi|88820879|gb|EAR30691.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas tunicata D2]
          Length = 92

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  ++++AD+    LKKG KF  LA++     S      LG F +  +       
Sbjct: 6   HALHILVKHKEQADDIIAQLKKGAKFQTLAKKFSSCPSGKNGGDLGEFKRGQMV-PQFDK 64

Query: 328 SIFSLAKKGDFTPVI--HGSFGYVIAHV 353
            +FS     +          FG+ +  V
Sbjct: 65  VVFSC----EVLEPQLVKTRFGWHVIKV 88


>gi|121592871|ref|YP_984767.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
 gi|120604951|gb|ABM40691.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
          Length = 278

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 18/175 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLK----KG 293
           E S +  +  +  +       E   +  ++F           ++ A+     L+     G
Sbjct: 99  EPSEEACRRYHAAHPTLGGQGERVRMRHVLFAVTPGVDVKLLRQRAEGVLLDLRCADDDG 158

Query: 294 KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            +F   A +     S      LG  S E       A  +F   + G  + ++H  FG  +
Sbjct: 159 ARFAAAAGQWSNCPSGQEGGDLGWLSAEDCA-PEFAREVFGTQEVGVLSRLVHSRFGLHV 217

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDEI 404
             V   +P   + F++V+  +A  +R       +++  + L  E    G  +D  
Sbjct: 218 VEVCERQPGQELPFEQVRASVALMLRQQAWVNALRQYLQLLAGEAEVEGVHLDAA 272


>gi|38637935|ref|NP_942909.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
 gi|32527273|gb|AAP86023.1| probable peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           H16]
          Length = 250

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 12/137 (8%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLK----KGKKF 296
           E      +  Y+   E++   E    + ++F      P     + A Q+L         F
Sbjct: 74  EPDEASCRRHYDSRPERFRDGEWVEADHILFQVTPRVPLDALREIAAQTLALVRGDPSTF 133

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            + A       S ++ G   + +  +       ++F   + G    ++   FG  I  + 
Sbjct: 134 AEHARALSNCPSGVNGGRLGRVFRGETAPEFERALFGALQDGVLPQLVETRFGLHIVRIL 193

Query: 355 NIKPSFTVSFQEVKKDI 371
              P   + F  V+ DI
Sbjct: 194 ERYPGTRLPFDAVRGDI 210


>gi|157964821|ref|YP_001499645.1| hypothetical protein RMA_1057 [Rickettsia massiliae MTU5]
 gi|157844597|gb|ABV85098.1| hypothetical protein RMA_1057 [Rickettsia massiliae MTU5]
          Length = 303

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 65/190 (34%), Gaps = 16/190 (8%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           L+++   F  + ++ A       + V SV  + +  + F    K  +      +  V + 
Sbjct: 12  LLLIITVFFTFNVAQASL----PNIVASVNDEPITLNEFRARKKMIMA-----LNNVESL 62

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
             A+   L    L +L+  + L Q+  D   E     +   I          NK  H   
Sbjct: 63  TPAQDKQLSDLALKSLIDESLLFQYAGDR--EIPQEEIDNAIKSIE----DRNKMPHGSL 116

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIV 196
           +  L    +N   +I      L + +++ +    ++ SN  +D A     +    +   V
Sbjct: 117 LQYLKSRSVNPDSFISQIKSELIKMNILSILSRSVQVSNKEIDVAILSSDQKDVEISMQV 176

Query: 197 LNNRHVPAIA 206
             ++     A
Sbjct: 177 FTSKDGSNKA 186


>gi|170725314|ref|YP_001759340.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
 gi|169810661|gb|ACA85245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
          Length = 92

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 12/91 (13%)

Query: 270 RTVE--QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
           RT     ++  +++ A+E  Q L KG KF QLA++     S     SLG F K  +   +
Sbjct: 3   RTASALHILVKHKELAEEIIQKLNKGAKFDQLAKKHSTCPSGKKGGSLGEFKKGQMV-PA 61

Query: 325 LADSIFSLAKKGDFTPVI--HGSFGYVIAHV 353
                F     G+          FG+ +  V
Sbjct: 62  FDKVCF----TGELITPHLVKTKFGWHVIKV 88


>gi|170727411|ref|YP_001761437.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
 gi|169812758|gb|ACA87342.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
          Length = 92

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
             T   L+  ++++ +   Q +  G  F  +A+      S      LGSF    +     
Sbjct: 3   QATARHLLVSSEEKCEALKQEIMGGADFADVAKANSSCPSGAQGGDLGSFGPGMMVK-EF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            + +FS     +    +   FGY +  V++ 
Sbjct: 62  DEVVFSAPLN-EVQGPVKTQFGYHLLEVTSR 91


>gi|146284004|ref|YP_001174157.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas stutzeri
           A1501]
 gi|145572209|gb|ABP81315.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas stutzeri
           A1501]
          Length = 392

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 65/176 (36%), Gaps = 18/176 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---NQKEADEAFQSL---------KKGK 294
           E  +   +  +E ++E++  P +  V  ++ P   +   A +A   L             
Sbjct: 214 EPDDAACRRFFEHHRERFAEPLLLRVRHILLPAAPDDARARDAQYRLGQKLLRQLQAAPA 273

Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           +F +LA+      S     +LG  +        L  ++  LA  G     +   +G+ + 
Sbjct: 274 RFTELAQRHSACPSKEDGGALGWLAPGQTV-PELDRALRHLA-IGLHERPLASRYGWHLV 331

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISR 406
            V   +    + +++V + + + +R       ++     LEE +   G  +D  + 
Sbjct: 332 SVDERREERPLPYEQVAERVRHSLREQATRRALRHYLLALEEEIGVEGLRLDADAD 387


>gi|157828877|ref|YP_001495119.1| hypothetical protein A1G_05640 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933604|ref|YP_001650393.1| hypothetical protein RrIowa_1217 [Rickettsia rickettsii str. Iowa]
 gi|157801358|gb|ABV76611.1| hypothetical protein A1G_05640 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908691|gb|ABY72987.1| hypothetical protein RrIowa_1217 [Rickettsia rickettsii str. Iowa]
          Length = 295

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 16/190 (8%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           L+++   F  + ++ A       + V SV  + +  + F    K  +      +  V + 
Sbjct: 4   LLLIITVFFTFNVAQASL----PNIVASVNDEPITLNEFRARKKMIMA-----LNNVASL 54

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
             A+   L    L +L+  + L Q+  D   E     +   I          NK  H   
Sbjct: 55  TPAQDKQLSDLALKSLIDESLLFQYAGDR--EIPQEEIENAIKSIE----DRNKMPHGSL 108

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIV 196
           +  L    +N   +I      L + +++      ++ SN  +D A     +    +   V
Sbjct: 109 LQYLKSRSVNPDSFISQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQKDVEISMQV 168

Query: 197 LNNRHVPAIA 206
             ++     A
Sbjct: 169 FTSKDGGNKA 178


>gi|149924625|ref|ZP_01912979.1| Parvulin-like peptidyl-prolyl isomerase [Plesiocystis pacifica
           SIR-1]
 gi|149814510|gb|EDM74097.1| Parvulin-like peptidyl-prolyl isomerase [Plesiocystis pacifica
           SIR-1]
          Length = 105

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYI 320
           Y      T  +     +++ +   + ++ G  F  LA+      S      LGSF K  +
Sbjct: 13  YQGSARSTATRSKAEAEQQINALAEQIRGGADFGDLAKANSDCPSGAKGGDLGSFGKGQM 72

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                  + F +   G  + VI   FGY I  
Sbjct: 73  VKP-FEVAAFGM-DVGQVSGVIETDFGYHIIK 102


>gi|13786637|pdb|1EQ3|A Chain A, Nmr Structure Of Human Parvulin Hpar14
          Length = 96

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 4   KVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 62

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 63  AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 96


>gi|32474370|ref|NP_867364.1| peptidyl-prolyl cis-trans isomerase [Rhodopirellula baltica SH 1]
 gi|32444908|emb|CAD74910.1| probable peptidyl-prolyl cis-trans isomerase [Rhodopirellula
           baltica SH 1]
          Length = 395

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 97/292 (33%), Gaps = 28/292 (9%)

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
           +    +        G   ++ + +    ++R+ +V      M     LL+Q      + R
Sbjct: 78  RVDAQLSRMLAQASGEVPEDELHYVKLRMTRSLLVQTIQSRMLREAFLLEQVGTAAADKR 137

Query: 191 SVDYIVLNNRH------------VPAIADPSNAVLTQWF--EKYKDNYRAPEYKRISY-I 235
                 +  +             +      S A L      E     +R  E+       
Sbjct: 138 REAEATMAAKARQMFYETELPGLMKKANVDSKAELDDLLRKEGSSLAFRQREFMDQMLGS 197

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSL 290
           L+   +  K   +S  E+   Y++++ KY        EQL       P +  A +A   +
Sbjct: 198 LYIRSKVNKDPAVSLSEIVRYYQEHQSKYEHKARARWEQLTVMFSNHPTRDAAMKAITEM 257

Query: 291 KK----GKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            +    G     +A+ + +   + S       ++  +    L   IFSL   G  + +I 
Sbjct: 258 GREALYGGNMQAVAKAKSEEPFASSGGLHDWTNQGSLVSAILDQQIFSLP-TGKMSEIIE 316

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
            +  Y I  V   + +      E++ DI++ +R  K     +E    + + +
Sbjct: 317 DTDAYHIIRVLEREDAGVTPVGELQDDISDILRQQKIRADQEEVMVEVRQRV 368


>gi|26990197|ref|NP_745622.1| hypothetical protein PP_3485 [Pseudomonas putida KT2440]
 gi|24985139|gb|AAN69086.1|AE016542_1 hypothetical protein PP_3485 [Pseudomonas putida KT2440]
          Length = 213

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 7/147 (4%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
              V   ++        + + L    + +  + N    +   L  + LD L+    L Q 
Sbjct: 22  AARVNGVEIGLMRLERYFSEYLDAQGRAVTSIRNPGLYKR--LRDQALDELIDKELLWQE 79

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            +  G+     +V  ++       G     S  +F  RLA  G +  +Y ++    ++  
Sbjct: 80  AQRQGIAVSDEQVSAQVGEIEAAFG-----SPALFERRLAEAGFDRAQYTEYTRHEMAAQ 134

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFEN 189
            V  +      PS   ++       + 
Sbjct: 135 QVYALLSAVDAPSEGEVEAFFDANQDR 161


>gi|109898004|ref|YP_661259.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           atlantica T6c]
 gi|109700285|gb|ABG40205.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           atlantica T6c]
          Length = 91

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +KEA +    L KG  F QLA++     S      LG FS   +   +    +F
Sbjct: 7   HILVKTEKEAQQLKAQLDKGANFQQLAKKHSLCPSGKKGGDLGEFSPGTMVK-AFDSVVF 65

Query: 331 SLAKKGDFTPVIHGSFGYVIAH 352
              +       +   FGY +  
Sbjct: 66  K-KEILTVHGPVKTQFGYHLIK 86


>gi|149178604|ref|ZP_01857190.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces maris
           DSM 8797]
 gi|148842530|gb|EDL56907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces maris
           DSM 8797]
          Length = 317

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 80/232 (34%), Gaps = 29/232 (12%)

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            ++   +      + L+D+  +   E        + +       DP +  L+Q       
Sbjct: 74  QLLESLINQRLIQDFLVDKKIKVPVELLDQSVSRIRSIIRKTDGDP-DQTLSQM------ 126

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK- 281
               PE  R +  L          +I+ +++Q  + +++E+           ++   +  
Sbjct: 127 -GFPPEKLRAAIELPLAWSIYASTQITPEKIQNYFAEHREELDGT-RIEARHILLKPEDP 184

Query: 282 -------EADEAFQSLKK----GK-KFIQLAEEQGKSLSDISLGSFS----KEYIPDVSL 325
                  +A      ++K    GK  F + A +   + S    G       +  +P V L
Sbjct: 185 SNQESIDKAKAQLADIRKQILDGKLTFAEAAVQHSTAPSKQDGGKLVPSAYRGKMPLV-L 243

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
              IF L ++G  +      FG  IA ++   P    S ++V+ +I   +  
Sbjct: 244 TQKIFPL-EEGAISEPFQTPFGIHIAQLNKKHPGQF-SLEDVRGEIYRSLSR 293


>gi|332521070|ref|ZP_08397528.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
           5H-3-7-4]
 gi|332043163|gb|EGI79360.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
           5H-3-7-4]
          Length = 482

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/373 (12%), Positives = 110/373 (29%), Gaps = 63/373 (16%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
                +  S+  +        E   V++              +   + ++++K       
Sbjct: 110 AIQDSIVVSDAEIRSYVNQQVERFRVNFK-------------TEDEMLKFYKKDNIKALT 156

Query: 227 PEYKRI----SYILFDVHEKEKKIEISNDELQAEY----EKNKEKYFSPEIRTVEQLVFP 278
            E   I            +   +IE++ +E++  +    +  K  + +     V Q+V  
Sbjct: 157 DEMFEINKANKLASEMQRKIVDEIEVTPEEVRQYFSEIPDNEKPTFGT--ELKVAQIVIE 214

Query: 279 ---NQKEADEAFQSL--------KKGKKFIQLA----EEQGKSLSDISLGSFSKEY-IPD 322
                +   E    L        + G  F   A     + G   +   L + ++      
Sbjct: 215 PKVTPEAEQEVIDRLNEFKKDVEENGASFSAKALFNSADTGSKRTGGRLPTMNRAKPQMV 274

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK-----KDIANQMRI 377
               ++ FSL ++G+ +      FG+ I ++  I+        + +      +I+++ + 
Sbjct: 275 KEFREATFSL-QEGEISEPFKTEFGWHIVYLEKIRGQEY----DARHILLIPEISDEAKA 329

Query: 378 TKASEKVKEDYKRLEE-----FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
             A EK++   + + +       A   + DEI  + +   I  P        +       
Sbjct: 330 E-AKEKLEGIRQNIIDGDITFAEAAKEASDEIKTKYEGGLIRNPETQDFTFPLAKMPTEI 388

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA--------RDRKLEEVLT 484
               E L      K                 +  +I E            ++  L E   
Sbjct: 389 YTEIENLETNEVSKVVADFTRTGNVKYKIYTVSDRIDEHKADFSRDFLKIKELALNEKRL 448

Query: 485 DVKKDWKTVKTAE 497
           +    W+  K  +
Sbjct: 449 NAIAKWQKEKIED 461


>gi|282859615|ref|ZP_06268718.1| PPIC-type PPIASE domain protein [Prevotella bivia JCVIHMP010]
 gi|282587618|gb|EFB92820.1| PPIC-type PPIASE domain protein [Prevotella bivia JCVIHMP010]
          Length = 486

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 95/283 (33%), Gaps = 35/283 (12%)

Query: 240 HEKEKKIEISNDELQAEYEK-NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK------- 291
            +    +++S  E++A ++K   +   +   R   +++    K   E    +K       
Sbjct: 177 EQLVSDLKVSPAEVRAYFKKLPADSIPTIPTRVEVEILTQTPKIEKEEVSRIKNQLRDYT 236

Query: 292 ----KGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
               KG+  F  LA    E+ G +     LG   +  + D + A + F+L      + ++
Sbjct: 237 DRVNKGETSFETLARLYSEDPGSARQGGELGFIGRAAL-DPAFAGAAFNLTDPKKLSKIV 295

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSM 401
              FGY I  + + +         V+  +        + +  K     +  +  A   + 
Sbjct: 296 ESEFGYHIIQLIDKRGDKI----NVRHILLKPKVSQASIDAAKARLDSIGNDIRAKKFTF 351

Query: 402 DEIS-----RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
           +  +      ++   S  L +   A        +  +P +   +      D+ +S   T+
Sbjct: 352 EAAAAYVSDDKDTKNSQGLMVNSTASSRTSRFRMQDLPTEVARVVDTMKVDE-ISAPFTM 410

Query: 457 ALPDGSYMWVQIK------ESIPARDRKLEEVLTDVKKDWKTV 493
           A   G  +   +K      E   +     +E+   V  + +  
Sbjct: 411 ANARGKVVCAIVKLKSRTPEHRASITEDFQEMKDIVLAERRKE 453


>gi|307565748|ref|ZP_07628217.1| PPIC-type PPIASE domain protein [Prevotella amnii CRIS 21A-A]
 gi|307345574|gb|EFN90942.1| PPIC-type PPIASE domain protein [Prevotella amnii CRIS 21A-A]
          Length = 466

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 23/183 (12%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYF--SPEIRTVEQLVFPNQKEADEA----------F 287
            +    I++S  E++  + K         P    VE L    + E +E            
Sbjct: 157 EKLVSDIKVSPSEVRTYFNKIPIDSIPIVPTQVEVEILTQTPKIEVEEINRIKNQLRDYT 216

Query: 288 QSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             +  G+  F  LA    E+ G +     LG   +  + D + A + F+L      + ++
Sbjct: 217 NRINNGETTFETLARLYSEDPGSARQGGELGFIGRASL-DPAFAGAAFNLTDPKKISKIV 275

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSM 401
              FGY I  + + +         V+  +        A +  K     +  +  +   + 
Sbjct: 276 ESEFGYHIIQLIDKRGDKI----NVRHILLKPKVSQAAIDAAKNKLDSIGNDIRSKKYTF 331

Query: 402 DEI 404
           + +
Sbjct: 332 EAV 334


>gi|239833408|ref|ZP_04681736.1| Chaperone surA precursor [Ochrobactrum intermedium LMG 3301]
 gi|239821471|gb|EEQ93040.1| Chaperone surA precursor [Ochrobactrum intermedium LMG 3301]
          Length = 301

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 16/160 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------- 280
           E    + +   +  + +    + +E    YE N+ ++ S  I     ++           
Sbjct: 105 ETDEDALVRMVIEREVEVPSATREEALRFYENNRHRFTSAPILEASHILIAADPADSQAR 164

Query: 281 KEADEAFQSLKKG-----KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332
           ++A      L          F  +A E     S     +LG  ++          ++  +
Sbjct: 165 EKARATAARLASAVIAEPATFASVAHEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 223

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           A        I   FG+ I  +        + F  V   IA
Sbjct: 224 AAGEITANPIESRFGFHIVRLDRRIEGEELPFDYVADRIA 263


>gi|13488227|ref|NP_085712.1| hypothetical protein mlr9159 [Mesorhizobium loti MAFF303099]
 gi|14027961|dbj|BAB54553.1| mlr9159 [Mesorhizobium loti MAFF303099]
          Length = 360

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 69/182 (37%), Gaps = 29/182 (15%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------------------PNQ 280
           ++  ++ ++ N+E++  Y+++   +      T++ LV                      +
Sbjct: 110 NDLYQRTQVGNEEVRRYYDEHVSDFVD---YTLQHLVIGYHGAESARNVGRKDMAEDDAR 166

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDF 338
            EA++  + L +G+ F +L +         S G    E      L +     +  K+ + 
Sbjct: 167 AEAEQLRKQLLEGENFAELVQCYSYDDDSKSDGGLLPETASRNLLPEIAQGIADLKENEI 226

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY--KRLEEFLA 396
           +  I   +GY +  V         SF++ ++ I N ++     +++      +RL +  A
Sbjct: 227 SHPIKTLYGYHLVRVIKR---SDNSFEDARRHIVNLLKSQIVDQQIDAIIWRRRLSDVFA 283

Query: 397 LG 398
             
Sbjct: 284 AA 285


>gi|88860987|ref|ZP_01135622.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas tunicata D2]
 gi|88816915|gb|EAR26735.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas tunicata D2]
          Length = 92

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++  +++   E  + ++ G  F Q+A++     S      LG F    +        
Sbjct: 6   ARHILVDSEEHCLELKKQIESGADFAQVAKDHSTCPSGQAGGELGEFGPGMMV-PEFDTV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +FS A        +   FGY +  V++  
Sbjct: 65  VFS-APVNTVQGPVQTQFGYHLLEVTSRT 92


>gi|84393693|ref|ZP_00992443.1| parvulin-like peptidyl-prolyl isomerase [Vibrio splendidus 12B01]
 gi|84375692|gb|EAP92589.1| parvulin-like peptidyl-prolyl isomerase [Vibrio splendidus 12B01]
          Length = 431

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 124/372 (33%), Gaps = 88/372 (23%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V    +  S    S K       +  G  + S+      L++++L+ L+      Q  E 
Sbjct: 34  VNEGVILQSDIDASMKTLRANAKKS-GQTLPSQDV----LNEQVLEKLIIDTIQTQEAER 88

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
           IG+  D  R+   I        KDN  + +   + +A EG++   +         R  V 
Sbjct: 89  IGVRIDDARLDQAIEGI----AKDNNQTVEQLTASVAEEGLSYNAF---------REQVR 135

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNY 224
                             R     R ++ +     ++  I A  +NA +           
Sbjct: 136 KEIAAS----------EARNALVRRRINILPAEVDNLADILAQETNATVQ---------- 175

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
                 +I +I    ++ +     + +EL                          + +A 
Sbjct: 176 -----YKIGHIQLRFNDDQ-----TKEEL--------------------------EAQAK 199

Query: 285 EAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           E  + L  GK F  +A    K   +L     G   KE +P    AD I  +  KG     
Sbjct: 200 EVVEELNSGKDFSTMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKGSIIGP 257

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQMRITK--ASEKVKEDYKRLEEFLA 396
                G+ I  + ++K   TV+  EV      I   + ++   A E+++E  +R+    A
Sbjct: 258 FRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDYGAKEQLEEITRRVN---A 314

Query: 397 LGTSMDEISRRE 408
              S  E++++ 
Sbjct: 315 GEASFGELAQQY 326


>gi|127513936|ref|YP_001095133.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
 gi|126639231|gb|ABO24874.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
          Length = 92

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  +++ A+E  + L KG KF QLA++     S     SLG F K  +   +     F
Sbjct: 9   HILVKHKELAEEIIEKLNKGAKFDQLAKKHSTCPSGKKGGSLGEFKKGQMV-PAFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GELITPHLVKTKFGWHVVKV 88


>gi|332345756|gb|AEE59090.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli UMNK88]
          Length = 93

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 68  SCPVL-EPTGPLHTQFGYHIIKV 89


>gi|323934167|gb|EGB30598.1| ppic-type ppiase domain-containing protein [Escherichia coli E1520]
          Length = 108

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 24  HILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 82

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 83  SCPVL-EPTGPLHTQFGYHIIKV 104


>gi|301047344|ref|ZP_07194429.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
 gi|300300761|gb|EFJ57146.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
          Length = 92

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 8   HILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 66

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 67  SCPVL-EPTGPLHTQFGYHIIKV 88


>gi|218692055|ref|YP_002400267.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli ED1a]
 gi|218429619|emb|CAR10580.2| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli ED1a]
          Length = 93

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 68  SCPVL-EPTGPLHTQFGYHIIKV 89


>gi|172065726|ref|YP_001816438.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
 gi|171997968|gb|ACB68885.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
          Length = 262

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 58/195 (29%), Gaps = 29/195 (14%)

Query: 229 YKRISYILFDVHEKEKKIEISN--------------DELQAEYEKNKEKYFSPEIRTVEQ 274
            + ++  L D         +                 + +  Y ++  ++   +I     
Sbjct: 54  QRAVALALIDERAPLDDATVDALLERELTHMPEPERADCERYYAQHPARFRRNDIVYASH 113

Query: 275 LVFPN---------QKEADEAFQSL-KKGKKFIQLAEEQG---KSLSDISLGSFSKEYIP 321
           ++F           ++ A+ A   +      F  +A E      +    SLG   +    
Sbjct: 114 VLFAVTDRVPLAPLRQRAERALADVVAAPDTFEAVARESSNCPSAQVGGSLGQLLRGDTV 173

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                 ++F     G    +++  FG+ I  +    P   V F E    IA  +   +  
Sbjct: 174 -PEFEAALFDTDGLGVLPKLVNTRFGFHIVRIERRVPGDIVPFDEAAGQIAAYL-SERVR 231

Query: 382 EKVKEDYKRLEEFLA 396
           ++    Y  +    A
Sbjct: 232 QRAMRQYVAILAAAA 246


>gi|30584149|gb|AAP36323.1| Homo sapiens protein (peptidyl-prolyl cis/trans isomerase)
           NIMA-interacting, 4 (parvulin) [synthetic construct]
          Length = 132

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 39  KVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 97

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 98  AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131


>gi|15804366|ref|NP_290406.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli O157:H7 EDL933]
 gi|15833963|ref|NP_312736.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. Sakai]
 gi|16131633|ref|NP_418223.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli str. K-12 substr. MG1655]
 gi|26250515|ref|NP_756555.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli CFT073]
 gi|74314289|ref|YP_312708.1| peptidyl-prolyl cis-trans isomerase C [Shigella sonnei Ss046]
 gi|82546130|ref|YP_410077.1| peptidyl-prolyl cis-trans isomerase C [Shigella boydii Sb227]
 gi|82779043|ref|YP_405392.1| peptidyl-prolyl cis-trans isomerase C [Shigella dysenteriae Sd197]
 gi|89110241|ref|AP_004021.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli str. K-12
           substr. W3110]
 gi|91213297|ref|YP_543283.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli UTI89]
 gi|110644105|ref|YP_671835.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 536]
 gi|117626038|ref|YP_859361.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli APEC O1]
 gi|157144407|ref|YP_001451724.1| hypothetical protein CKO_00116 [Citrobacter koseri ATCC BAA-895]
 gi|157159000|ref|YP_001465256.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli E24377A]
 gi|157163250|ref|YP_001460568.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli HS]
 gi|168751733|ref|ZP_02776755.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4113]
 gi|168753669|ref|ZP_02778676.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4401]
 gi|168764147|ref|ZP_02789154.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4501]
 gi|168768053|ref|ZP_02793060.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4486]
 gi|168775677|ref|ZP_02800684.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4196]
 gi|168780671|ref|ZP_02805678.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4076]
 gi|168786610|ref|ZP_02811617.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC869]
 gi|168800992|ref|ZP_02825999.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC508]
 gi|170022196|ref|YP_001727150.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           ATCC 8739]
 gi|170083264|ref|YP_001732584.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli str. K-12 substr. DH10B]
 gi|187731031|ref|YP_001882399.1| peptidyl-prolyl cis-trans isomerase C [Shigella boydii CDC 3083-94]
 gi|188492216|ref|ZP_02999486.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 53638]
 gi|191166088|ref|ZP_03027923.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B7A]
 gi|191174379|ref|ZP_03035884.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli F11]
 gi|193066141|ref|ZP_03047196.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli E22]
 gi|193071034|ref|ZP_03051961.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli E110019]
 gi|194429785|ref|ZP_03062300.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B171]
 gi|194434610|ref|ZP_03066866.1| peptidyl-prolyl cis-trans isomerase C [Shigella dysenteriae 1012]
 gi|194438654|ref|ZP_03070742.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 101-1]
 gi|195938064|ref|ZP_03083446.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli O157:H7 str. EC4024]
 gi|208808398|ref|ZP_03250735.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4206]
 gi|208813213|ref|ZP_03254542.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4045]
 gi|208819051|ref|ZP_03259371.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4042]
 gi|209400598|ref|YP_002273294.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4115]
 gi|215489105|ref|YP_002331536.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli O127:H6 str. E2348/69]
 gi|217325985|ref|ZP_03442069.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. TW14588]
 gi|218550998|ref|YP_002384789.1| peptidyl-prolyl cis-trans isomerase C [Escherichia fergusonii ATCC
           35469]
 gi|218556338|ref|YP_002389252.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli IAI1]
 gi|218560842|ref|YP_002393755.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli S88]
 gi|218697493|ref|YP_002405160.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli 55989]
 gi|218707413|ref|YP_002414932.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli UMN026]
 gi|227888640|ref|ZP_04006445.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli 83972]
 gi|237702786|ref|ZP_04533267.1| peptidyl-prolyl cis-trans isomerase C [Escherichia sp. 3_2_53FAA]
 gi|238902858|ref|YP_002928654.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli BW2952]
 gi|253775598|ref|YP_003038429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038988|ref|ZP_04873039.1| peptidyl-prolyl cis-trans isomerase C [Escherichia sp. 1_1_43]
 gi|254163720|ref|YP_003046828.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli B str. REL606]
 gi|254795774|ref|YP_003080611.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. TW14359]
 gi|256021482|ref|ZP_05435347.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Shigella sp.
           D9]
 gi|256026123|ref|ZP_05439988.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia sp.
           4_1_40B]
 gi|260846448|ref|YP_003224226.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O103:H2
           str. 12009]
 gi|260857818|ref|YP_003231709.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O26:H11
           str. 11368]
 gi|260870501|ref|YP_003236903.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O111:H-
           str. 11128]
 gi|261225549|ref|ZP_05939830.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261255596|ref|ZP_05948129.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. FRIK966]
 gi|283787544|ref|YP_003367409.1| peptidyl-prolyl cis-trans isomerase C [Citrobacter rodentium
           ICC168]
 gi|291285191|ref|YP_003502009.1| Peptidyl-prolyl cis-trans isomerase C [Escherichia coli O55:H7 str.
           CB9615]
 gi|293407407|ref|ZP_06651327.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli FVEC1412]
 gi|293413220|ref|ZP_06655882.1| peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli B354]
 gi|293417241|ref|ZP_06659866.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B185]
 gi|293468094|ref|ZP_06664506.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B088]
 gi|297519155|ref|ZP_06937541.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli OP50]
 gi|298383147|ref|ZP_06992741.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli FVEC1302]
 gi|300823307|ref|ZP_07103438.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
 gi|300900680|ref|ZP_07118833.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
 gi|300904026|ref|ZP_07121908.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
 gi|300921519|ref|ZP_07137863.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
 gi|300923275|ref|ZP_07139324.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
 gi|300930062|ref|ZP_07145492.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
 gi|300947369|ref|ZP_07161565.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
 gi|300955223|ref|ZP_07167618.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
 gi|300979304|ref|ZP_07174488.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
 gi|301028986|ref|ZP_07192143.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
 gi|301303670|ref|ZP_07209791.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
 gi|301325465|ref|ZP_07218948.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
 gi|301646160|ref|ZP_07246059.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
 gi|307140476|ref|ZP_07499832.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli H736]
 gi|307313647|ref|ZP_07593267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W]
 gi|309784487|ref|ZP_07679125.1| peptidyl-prolyl cis-trans isomerase C [Shigella dysenteriae 1617]
 gi|309796284|ref|ZP_07690694.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
 gi|312969494|ref|ZP_07783696.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 2362-75]
 gi|312971941|ref|ZP_07786115.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 1827-70]
 gi|331644509|ref|ZP_08345629.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli H736]
 gi|331649601|ref|ZP_08350683.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli M605]
 gi|331655460|ref|ZP_08356453.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli M718]
 gi|331660119|ref|ZP_08361055.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA206]
 gi|331670621|ref|ZP_08371458.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA271]
 gi|331679885|ref|ZP_08380548.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli H591]
 gi|331685496|ref|ZP_08386080.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli H299]
 gi|332282716|ref|ZP_08395129.1| peptidyl-prolyl cis-trans isomerase C [Shigella sp. D9]
 gi|71159799|sp|P0A9L7|PPIC_ECO57 RecName: Full=Peptidyl-prolyl cis-trans isomerase C; Short=PPIase
           C; AltName: Full=Parvulin; AltName: Full=Rotamase C
 gi|71159800|sp|P0A9L6|PPIC_ECOL6 RecName: Full=Peptidyl-prolyl cis-trans isomerase C; Short=PPIase
           C; AltName: Full=Parvulin; AltName: Full=Rotamase C
 gi|71159801|sp|P0A9L5|PPIC_ECOLI RecName: Full=Peptidyl-prolyl cis-trans isomerase C; Short=PPIase
           C; AltName: Full=Par10; AltName: Full=Parvulin; AltName:
           Full=Rotamase C
 gi|12518636|gb|AAG58970.1|AE005609_2 peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli O157:H7 str. EDL933]
 gi|26110945|gb|AAN83129.1|AE016769_244 Peptidyl-prolyl cis-trans isomerase C [Escherichia coli CFT073]
 gi|693800|gb|AAB32054.1| parvulin [Escherichia coli]
 gi|836657|gb|AAA67578.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli str. K-12
           substr. MG1655]
 gi|1790211|gb|AAC76780.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli str. K-12 substr. MG1655]
 gi|13364184|dbj|BAB38132.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. Sakai]
 gi|73857766|gb|AAZ90473.1| peptidyl-prolyl cis-trans isomerase C [Shigella sonnei Ss046]
 gi|81243191|gb|ABB63901.1| peptidyl-prolyl cis-trans isomerase C [Shigella dysenteriae Sd197]
 gi|81247541|gb|ABB68249.1| peptidyl-prolyl cis-trans isomerase C [Shigella boydii Sb227]
 gi|85676272|dbj|BAE77522.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli str. K12
           substr. W3110]
 gi|91074871|gb|ABE09752.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli UTI89]
 gi|110345697|gb|ABG71934.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 536]
 gi|115515162|gb|ABJ03237.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli APEC O1]
 gi|157068930|gb|ABV08185.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli HS]
 gi|157081030|gb|ABV20738.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli E24377A]
 gi|157081612|gb|ABV11290.1| hypothetical protein CKO_00116 [Citrobacter koseri ATCC BAA-895]
 gi|169757124|gb|ACA79823.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           ATCC 8739]
 gi|169891099|gb|ACB04806.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli str. K-12 substr. DH10B]
 gi|187428023|gb|ACD07297.1| peptidyl-prolyl cis-trans isomerase C [Shigella boydii CDC 3083-94]
 gi|187768876|gb|EDU32720.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4196]
 gi|188014263|gb|EDU52385.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4113]
 gi|188487415|gb|EDU62518.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 53638]
 gi|189001576|gb|EDU70562.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4076]
 gi|189359243|gb|EDU77662.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4401]
 gi|189362581|gb|EDU81000.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4486]
 gi|189365788|gb|EDU84204.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4501]
 gi|189373218|gb|EDU91634.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC869]
 gi|189376805|gb|EDU95221.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC508]
 gi|190903864|gb|EDV63578.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B7A]
 gi|190905356|gb|EDV64990.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli F11]
 gi|192926238|gb|EDV80877.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli E22]
 gi|192955621|gb|EDV86097.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli E110019]
 gi|194412197|gb|EDX28504.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B171]
 gi|194417129|gb|EDX33242.1| peptidyl-prolyl cis-trans isomerase C [Shigella dysenteriae 1012]
 gi|194422458|gb|EDX38457.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 101-1]
 gi|208728199|gb|EDZ77800.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4206]
 gi|208734490|gb|EDZ83177.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4045]
 gi|208739174|gb|EDZ86856.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4042]
 gi|209161998|gb|ACI39431.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4115]
 gi|209753548|gb|ACI75081.1| hypothetical protein ECs4709 [Escherichia coli]
 gi|209753550|gb|ACI75082.1| hypothetical protein ECs4709 [Escherichia coli]
 gi|209753552|gb|ACI75083.1| hypothetical protein ECs4709 [Escherichia coli]
 gi|209753554|gb|ACI75084.1| hypothetical protein ECs4709 [Escherichia coli]
 gi|209753556|gb|ACI75085.1| hypothetical protein ECs4709 [Escherichia coli]
 gi|215267177|emb|CAS11625.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli O127:H6 str. E2348/69]
 gi|217322206|gb|EEC30630.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. TW14588]
 gi|218354225|emb|CAV00876.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli 55989]
 gi|218358539|emb|CAQ91187.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           fergusonii ATCC 35469]
 gi|218363107|emb|CAR00747.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli IAI1]
 gi|218367611|emb|CAR05395.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli S88]
 gi|218434510|emb|CAR15437.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli UMN026]
 gi|222035479|emb|CAP78224.1| Peptidyl-prolyl cis-trans isomerase C [Escherichia coli LF82]
 gi|226838679|gb|EEH70707.1| peptidyl-prolyl cis-trans isomerase C [Escherichia sp. 1_1_43]
 gi|226902957|gb|EEH89216.1| peptidyl-prolyl cis-trans isomerase C [Escherichia sp. 3_2_53FAA]
 gi|227834479|gb|EEJ44945.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli 83972]
 gi|238861994|gb|ACR63992.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli BW2952]
 gi|242379308|emb|CAQ34119.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli BL21(DE3)]
 gi|253326642|gb|ACT31244.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975621|gb|ACT41292.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli B str. REL606]
 gi|253979777|gb|ACT45447.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli BL21(DE3)]
 gi|254595174|gb|ACT74535.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli O157:H7 str. TW14359]
 gi|257756467|dbj|BAI27969.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O26:H11
           str. 11368]
 gi|257761595|dbj|BAI33092.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O103:H2
           str. 12009]
 gi|257766857|dbj|BAI38352.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O111:H-
           str. 11128]
 gi|260451379|gb|ACX41801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           DH1]
 gi|281180826|dbj|BAI57156.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE15]
 gi|282950998|emb|CBG90675.1| peptidyl-prolyl cis-trans isomerase C [Citrobacter rodentium
           ICC168]
 gi|290765064|gb|ADD59025.1| Peptidyl-prolyl cis-trans isomerase C [Escherichia coli O55:H7 str.
           CB9615]
 gi|291321472|gb|EFE60910.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B088]
 gi|291425518|gb|EFE98556.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli FVEC1412]
 gi|291431009|gb|EFF04004.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B185]
 gi|291468168|gb|EFF10665.1| peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli B354]
 gi|294491161|gb|ADE89917.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli IHE3034]
 gi|298276383|gb|EFI17902.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli FVEC1302]
 gi|299878029|gb|EFI86240.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
 gi|300308057|gb|EFJ62577.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
 gi|300317877|gb|EFJ67661.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
 gi|300355829|gb|EFJ71699.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
 gi|300403978|gb|EFJ87516.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
 gi|300411587|gb|EFJ94897.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
 gi|300420420|gb|EFK03731.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
 gi|300453031|gb|EFK16651.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
 gi|300462050|gb|EFK25543.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
 gi|300524093|gb|EFK45162.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
 gi|300840970|gb|EFK68730.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
 gi|300847692|gb|EFK75452.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
 gi|301075629|gb|EFK90435.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
 gi|306906628|gb|EFN37140.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W]
 gi|307555905|gb|ADN48680.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli ABU 83972]
 gi|307628840|gb|ADN73144.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli UM146]
 gi|308120166|gb|EFO57428.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
 gi|308927593|gb|EFP73062.1| peptidyl-prolyl cis-trans isomerase C [Shigella dysenteriae 1617]
 gi|309704215|emb|CBJ03562.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli ETEC
           H10407]
 gi|310334318|gb|EFQ00523.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 1827-70]
 gi|312286041|gb|EFR13959.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 2362-75]
 gi|312948332|gb|ADR29159.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315063073|gb|ADT77400.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli W]
 gi|315138353|dbj|BAJ45512.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli DH1]
 gi|315254139|gb|EFU34107.1| PPIC-type PPIASE domain protein [Escherichia coli MS 85-1]
 gi|315284674|gb|EFU44119.1| PPIC-type PPIASE domain protein [Escherichia coli MS 110-3]
 gi|315293140|gb|EFU52492.1| PPIC-type PPIASE domain protein [Escherichia coli MS 153-1]
 gi|315300850|gb|EFU60072.1| PPIC-type PPIASE domain protein [Escherichia coli MS 16-3]
 gi|315618524|gb|EFU99110.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 3431]
 gi|320176018|gb|EFW51087.1| Peptidyl-prolyl cis-trans isomerase ppiC [Shigella dysenteriae CDC
           74-1112]
 gi|320185436|gb|EFW60205.1| Peptidyl-prolyl cis-trans isomerase ppiC [Shigella flexneri CDC
           796-83]
 gi|320191130|gb|EFW65780.1| Peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli O157:H7
           str. EC1212]
 gi|320197589|gb|EFW72201.1| Peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli
           WV_060327]
 gi|320198516|gb|EFW73117.1| Peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli EC4100B]
 gi|320639260|gb|EFX08882.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. G5101]
 gi|320644645|gb|EFX13695.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H-
           str. 493-89]
 gi|320649970|gb|EFX18473.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H-
           str. H 2687]
 gi|320655316|gb|EFX23258.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660941|gb|EFX28384.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320666065|gb|EFX33079.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. LSU-61]
 gi|323155178|gb|EFZ41362.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli EPECa14]
 gi|323161160|gb|EFZ47078.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli E128010]
 gi|323167629|gb|EFZ53334.1| peptidyl-prolyl cis-trans isomerase C [Shigella sonnei 53G]
 gi|323173393|gb|EFZ59022.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli LT-68]
 gi|323177786|gb|EFZ63370.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 1180]
 gi|323182549|gb|EFZ67953.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 1357]
 gi|323189501|gb|EFZ74781.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli RN587/1]
 gi|323380865|gb|ADX53133.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           KO11]
 gi|323938916|gb|EGB35135.1| ppic-type ppiase domain-containing protein [Escherichia coli E482]
 gi|323943821|gb|EGB39916.1| ppic-type ppiase domain-containing protein [Escherichia coli H120]
 gi|323949338|gb|EGB45228.1| ppic-type ppiase domain-containing protein [Escherichia coli H252]
 gi|323954091|gb|EGB49888.1| ppic-type ppiase domain-containing protein [Escherichia coli H263]
 gi|323959034|gb|EGB54703.1| ppic-type ppiase domain-containing protein [Escherichia coli H489]
 gi|323969281|gb|EGB64581.1| ppic-type ppiase domain-containing protein [Escherichia coli TA007]
 gi|323974360|gb|EGB69488.1| ppic-type ppiase domain-containing protein [Escherichia coli
           TW10509]
 gi|324014721|gb|EGB83940.1| PPIC-type PPIASE domain protein [Escherichia coli MS 60-1]
 gi|324016175|gb|EGB85394.1| PPIC-type PPIASE domain protein [Escherichia coli MS 117-3]
 gi|324111004|gb|EGC04991.1| ppic-type ppiase domain-containing protein [Escherichia fergusonii
           B253]
 gi|324115760|gb|EGC09695.1| ppic-type ppiase domain-containing protein [Escherichia coli E1167]
 gi|325499251|gb|EGC97110.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           fergusonii ECD227]
 gi|326344234|gb|EGD67994.1| Peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli O157:H7
           str. 1125]
 gi|326347939|gb|EGD71653.1| Peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli O157:H7
           str. 1044]
 gi|330908079|gb|EGH36598.1| peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli AA86]
 gi|331036181|gb|EGI08416.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli H736]
 gi|331041471|gb|EGI13619.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli M605]
 gi|331046781|gb|EGI18865.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli M718]
 gi|331052687|gb|EGI24722.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA206]
 gi|331062094|gb|EGI34016.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA271]
 gi|331072432|gb|EGI43764.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli H591]
 gi|331077197|gb|EGI48411.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli H299]
 gi|332084709|gb|EGI89897.1| peptidyl-prolyl cis-trans isomerase C [Shigella boydii 5216-82]
 gi|332084933|gb|EGI90115.1| peptidyl-prolyl cis-trans isomerase C [Shigella dysenteriae 155-74]
 gi|332089057|gb|EGI94168.1| peptidyl-prolyl cis-trans isomerase C [Shigella boydii 3594-74]
 gi|332105068|gb|EGJ08414.1| peptidyl-prolyl cis-trans isomerase C [Shigella sp. D9]
          Length = 93

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 68  SCPVL-EPTGPLHTQFGYHIIKV 89


>gi|312888862|ref|ZP_07748425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mucilaginibacter
           paludis DSM 18603]
 gi|311298737|gb|EFQ75843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mucilaginibacter
           paludis DSM 18603]
          Length = 457

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 73/233 (31%), Gaps = 41/233 (17%)

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           D+ +    E R  + +    + +    + +   + ++F+    +               +
Sbjct: 124 DELRPDIKEQRVAEKMR---QKITEKVNVTPFDIKKYFDAIPKD--------------SL 166

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               K++E+    +         K  + E +         + +A+     +K G+ F  L
Sbjct: 167 PTYNKEVEVGEISI-------TPKLTAEEKKQF-------KDKAESLRARVKGGEDFGNL 212

Query: 300 A----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           A    ++ G S     LG   +        A   F L K G+ +PV    FG+    V  
Sbjct: 213 ARLYSQDPGSSPDGGDLGFADRSTFVK-EFAAMAFKL-KAGEISPVFETDFGFHFLQVIE 270

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +         V+  +        + ++ K     +   L+    +D  S   
Sbjct: 271 RRGEQV----HVRHILIKTEVSQGSLDRAKVKIDSVYTLLSGNKKIDFSSAAA 319


>gi|242374090|ref|ZP_04819664.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348215|gb|EES39817.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus epidermidis
           M23864:W1]
          Length = 331

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 71/188 (37%), Gaps = 41/188 (21%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---- 283
           E K++S           K+++S+ E++             + +    ++   + ++    
Sbjct: 114 EQKKLSAY--QKQLLLDKVKVSDKEIKD------------DSKKASHILIKVKSKSSDKE 159

Query: 284 -----------DEAFQSLKKGKK-FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLAD 327
                      ++  + ++K    F ++A+++    S    D SLG   K  + D S   
Sbjct: 160 GLSDKKAKEKAEKIQKEVEKNPSKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVD-SFEK 218

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           ++F L K+G  + V+   +GY I             F + K ++  ++   K  +K K  
Sbjct: 219 ALFKL-KEGQVSKVVKTDYGYHIIK-----ADKETDFNKEKSNLKEKIIEQKVQKKPKLL 272

Query: 388 YKRLEEFL 395
               ++ L
Sbjct: 273 TDAYKDLL 280


>gi|146313640|ref|YP_001178714.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter sp.
           638]
 gi|145320516|gb|ABP62663.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter sp.
           638]
          Length = 93

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQIKNGADFEKLAKKHSTCPSGKKGGHLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 68  SCPVL-EPTGPLHTQFGYHIIKV 89


>gi|19704655|ref|NP_604217.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714961|gb|AAL95516.1| Peptidyl-prolyl cis-trans isomerase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 356

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 123/361 (34%), Gaps = 51/361 (14%)

Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-NLLLDQAKRFYFENRSVDYIVLNNRHV 202
           + I++++      +M+SR   +           N  LD   +F       DY V     V
Sbjct: 42  QKISKEDAEKQAKEMISRQIKMAKIAKEKGVKVNENLDSISQFQ------DYYVGLAEKV 95

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                P++  L ++F   ++ Y  P       +   V   ++     +D+L         
Sbjct: 96  RDEVKPTDDELMKFFNANREKYSIPATADAKLVFISVKSAKE-----DDDL--------- 141

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEYI 320
                            +++A++    L   + F +  +  G  + +    LG+F  + +
Sbjct: 142 ----------------AKEKAEKLLSELT-PENFTEKGKTLGNNQDIIYQDLGTFGTKAM 184

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                 +++  +        VI   FGY +A V     +     + +   +       K 
Sbjct: 185 VK-EFEEALKDVPSNTVVNKVIKTKFGYHVALVKENNNNRQWGVEHI---LIVPYPSEKT 240

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
             +  E   +++  +  GT    ++  +KI    +   D  G    G  +    Y  ++ 
Sbjct: 241 VTEKLEKLNKIKADIEAGT----LALNDKIDEDAIQSFDAKGITPDGI-IPDFVYSPEIA 295

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
             VF  +  L+K   +     + +  Q  + + A +   ++    VK D+   K AE +S
Sbjct: 296 KAVFSTE--LNKVGIINPNKATIIIFQKTKEVKAENANFDKSKEQVKSDYVNKKVAEYMS 353

Query: 501 S 501
            
Sbjct: 354 K 354


>gi|157785591|ref|NP_001099127.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Bos taurus]
 gi|254782279|sp|A6QPY8|PIN4_BOVIN RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4; AltName: Full=Parvulin-14; Short=Par14; AltName:
           Full=Peptidyl-prolyl cis-trans isomerase Pin4;
           Short=PPIase Pin4; AltName: Full=Rotamase Pin4
 gi|151556240|gb|AAI49560.1| PIN4 protein [Bos taurus]
 gi|296470836|gb|DAA12951.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Bos taurus]
          Length = 131

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G KF ++A +  +  +     LG  ++  +      ++
Sbjct: 39  KVRHILCEKHGKILEAMEKLKSGMKFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 97

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L      K     P +   FGY I  V   K
Sbjct: 98  AFALPISVLDKPVFTDPPVKTKFGYHIIMVEGRK 131


>gi|228475889|ref|ZP_04060599.1| foldase protein PrsA [Staphylococcus hominis SK119]
 gi|228270044|gb|EEK11514.1| foldase protein PrsA [Staphylococcus hominis SK119]
          Length = 319

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 69/187 (36%), Gaps = 40/187 (21%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285
           E KR+S           KI++S+ E++             + +    ++   + ++D+  
Sbjct: 114 EQKRLSAY--QKQLLNDKIKVSDKEIKD------------DTKKASHILIKVKSDSDKEG 159

Query: 286 ------------AFQSLKKG-KKFIQLAEEQG----KSLSDISLGSFSKEYIPDVSLADS 328
                         + ++K   KF +LA+++      +    SLG   K  + D     +
Sbjct: 160 LSDKKAKAKAEKIQKEVEKNPNKFDELAKKESMDSASAKKGGSLGYVIKGQMVD-KFDKA 218

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           +F L K+G  + ++   +GY I   +         F + K  +  ++   K  +  K   
Sbjct: 219 LFKL-KEGQISDIVKTEYGYHIIKANKED-----DFNKQKSQLKTKIIEQKVQKNPKLLT 272

Query: 389 KRLEEFL 395
              ++ L
Sbjct: 273 NAYKDLL 279


>gi|116334085|ref|YP_795612.1| peptidylprolyl isomerase [Lactobacillus brevis ATCC 367]
 gi|122269231|sp|Q03QE1|PRSA_LACBA RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|116099432|gb|ABJ64581.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus brevis ATCC
           367]
          Length = 305

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 76/195 (38%), Gaps = 35/195 (17%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             S + +T+ F+KYK  Y              ++     I   L      +  + +++ +
Sbjct: 68  KVSKSAVTKQFDKYKSQYGSSFSSVLSQSGMTQSSLKTEIRSNLLLKEAVKDNVTVTDAQ 127

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK------FIQLAEEQGKS 306
           L+ +++  +     PE+ +V  ++   +  A    + LK  K       F +LA++    
Sbjct: 128 LKKQFKSYE-----PEV-SVAHILVSKKSTAQTIIKDLKSTKSSDMTSEFTKLAKKYSTD 181

Query: 307 LSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSF 360
            +  + G       S +   D +   + F L K G++T   +   +GY +  +   K   
Sbjct: 182 TATKNKGGKLSSFDSTDTSLDSTFKKAAFKL-KTGEYTATPVKTQYGYHVILML--KNPG 238

Query: 361 TVSFQEVKKDIANQM 375
             + +E K ++  Q+
Sbjct: 239 KGTIKEHKAELTKQI 253


>gi|297710312|ref|XP_002831846.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like isoform 1 [Pongo abelii]
 gi|332263759|ref|XP_003280920.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like isoform 1 [Nomascus leucogenys]
 gi|20139299|sp|Q9Y237|PIN4_HUMAN RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4; AltName: Full=Parvulin-14; Short=Par14; Short=hPar14;
           AltName: Full=Parvulin-17; Short=Par17; Short=hPar17;
           AltName: Full=Peptidyl-prolyl cis-trans isomerase Pin4;
           Short=PPIase Pin4; AltName: Full=Peptidyl-prolyl
           cis/trans isomerase EPVH; Short=hEPVH; AltName:
           Full=Rotamase Pin4
 gi|4689436|gb|AAD27893.1|AF143096_1 peptidyl-prolyl cis-trans isomerase EPVH [Homo sapiens]
 gi|5420453|dbj|BAA82320.1| parvulin [Homo sapiens]
 gi|57163115|emb|CAI39856.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Homo sapiens]
          Length = 131

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 39  KVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 97

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 98  AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131


>gi|229590103|ref|YP_002872222.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25]
 gi|229361969|emb|CAY48869.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25]
          Length = 93

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++   + + +E    ++ G  F ++A+      S     +LGSF    +    
Sbjct: 2   AKATARHILVSTEDKCNELKAQIEGGADFAEIAKANSSCPSSRDGGNLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A        +   FGY +  V++ +
Sbjct: 61  FDTVVFS-APVNTVQGPVKTQFGYHLLEVTSRQ 92


>gi|330721567|gb|EGG99598.1| Peptidyl-prolyl cis-trans isomerase ppiC [gamma proteobacterium
           IMCC2047]
          Length = 92

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
              ++   ++EA+   + L  G  F  LA++      +     LG F    +   ++ + 
Sbjct: 6   ARHILVKTKEEAEAIKKKLAGGADFATLAKKHSLCNSAKRGGDLGEFGPGKMIK-AVDNV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAH 352
           +F           I   FGY +  
Sbjct: 65  VFKKPVL-KVHGPIKTKFGYHLIE 87


>gi|229587026|ref|YP_002845527.1| hypothetical protein RAF_ORF0929 [Rickettsia africae ESF-5]
 gi|228022076|gb|ACP53784.1| Unknown [Rickettsia africae ESF-5]
          Length = 295

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 16/190 (8%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           L+++   F  + ++ A       + V SV  + +  + F    K  +      +  V + 
Sbjct: 4   LLLIITVFFTFNVAQASL----PNIVASVNDEPITLNEFRARKKMIMA-----LNNVESL 54

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
             A+   L    L +L+  + L Q+  D   E     +   I          NK  H   
Sbjct: 55  TPAQDKQLSDLALKSLIDESLLFQYAGDR--EIPQEEIENAIKSIE----DRNKMPHGAL 108

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIV 196
           +  L    +N   +I      L + +++      ++ SN  +D A     +    +   V
Sbjct: 109 LQYLKSRSVNPDSFISQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQKDVEISMQV 168

Query: 197 LNNRHVPAIA 206
             ++     A
Sbjct: 169 FTSKDGGNKA 178


>gi|296235752|ref|XP_002763032.1| PREDICTED: hypothetical protein LOC100394726 [Callithrix jacchus]
          Length = 235

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 143 KVRHILCEKHSKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 201

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 202 AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 235


>gi|332978701|gb|EGK15395.1| peptidyl-prolyl cis-trans isomerase [Psychrobacter sp. 1501(2011)]
          Length = 92

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 12/95 (12%)

Query: 270 RTVE--QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
           RT     ++  +++ A+E    LKKG  F  LA++     S      LG F K  +   +
Sbjct: 3   RTASALHILVKDKELAEEIIAKLKKGAHFDVLAKKHSTCPSGKKGGDLGEFRKGQMV-PA 61

Query: 325 LADSIFSLAKKGDFTPVI--HGSFGYVIAHVSNIK 357
                F     G+          FG+ +  V   K
Sbjct: 62  FDKVCF----NGELLTPHLVKTKFGWHVVKVLYRK 92


>gi|330968107|gb|EGH68367.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 93

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++  ++ + +E    ++ G  F ++A+      S      LGSF    +       
Sbjct: 5   TARHILVSSEDKCNELKTQIEGGADFAEVAKANSSCPSSRQGGDLGSFGPGQMVK-EFDT 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +FS A        +   FGY +  V++ +
Sbjct: 64  VVFS-APVNTVQGPVKTQFGYHLLEVTSRQ 92


>gi|213970614|ref|ZP_03398740.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato T1]
 gi|301386322|ref|ZP_07234740.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060903|ref|ZP_07252444.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato K40]
 gi|302133966|ref|ZP_07259956.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213924611|gb|EEB58180.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato T1]
 gi|331015428|gb|EGH95484.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 93

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++  ++++ +E    ++ G  F ++A+      S      LGSF    +       
Sbjct: 5   TARHILVSSEEKCNELKTQIEGGADFAEVAKANSSCPSSRQGGDLGSFGPGQMVK-EFDT 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +FS A        +   FGY +  V++ +
Sbjct: 64  VVFS-APVNTVQGPVKTQFGYHLLEVTSRQ 92


>gi|70730930|ref|YP_260671.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas fluorescens
           Pf-5]
 gi|68345229|gb|AAY92835.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas fluorescens
           Pf-5]
          Length = 93

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
              T   ++  ++ + +E    ++ G  F ++A++      S    +LGSF    +    
Sbjct: 2   AKATARHILVASEAKCNELKAEIEAGADFAEVAKKNSTCPSSRDGGNLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A        +   FGY +  V++ +
Sbjct: 61  FDTVVFS-APVNVVQGPVKTQFGYHLLEVTSRQ 92


>gi|254492427|ref|ZP_05105599.1| PPIC-type PPIASE domain, putative [Methylophaga thiooxidans DMS010]
 gi|224462319|gb|EEF78596.1| PPIC-type PPIASE domain, putative [Methylophaga thiooxydans DMS010]
          Length = 93

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 5/94 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVS 324
              T   ++  +++   E  + +++G  F  +A+E        S   LG F    +    
Sbjct: 2   AKATARHILVESEEICLELKREIEQGADFADIAKEHSSCPSGRSGGDLGEFGPGMMV-PE 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
               +FS A        +   FGY +  V++   
Sbjct: 61  FDKVVFS-APVNTVQGPVQTQFGYHLLEVTSRSE 93


>gi|222109651|ref|YP_002551915.1| ppic-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
           TPSY]
 gi|221729095|gb|ACM31915.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
           TPSY]
          Length = 278

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 18/175 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLK----KG 293
           E S +  +  +  +       E   +  ++F           ++ A+     L+     G
Sbjct: 99  EPSEEACRRYHAAHPTLGGQGERVRMRHVLFAVTPGVDVKLLRQRAEGVLLDLRCADDDG 158

Query: 294 KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            +F   A +     S      LG  S E       A  +F   + G  + ++H  FG  +
Sbjct: 159 ARFAAAAGQWSNCPSGQEGGDLGWLSAEDCA-PEFAREVFGTQEVGVLSRLVHSRFGLHV 217

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDEI 404
             V   +P   + F++V+  +A  +R       +++  + L  E    G  +D  
Sbjct: 218 VEVCERQPGQELPFEQVRASVALMLRQQAWVNALRQYLQLLAGEAEVEGVHLDAA 272


>gi|57867315|ref|YP_188945.1| protein export protein PrsA [Staphylococcus epidermidis RP62A]
 gi|293366181|ref|ZP_06612867.1| foldase PrsA [Staphylococcus epidermidis M23864:W2(grey)]
 gi|81674051|sp|Q5HN96|PRSA_STAEQ RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|57637973|gb|AAW54761.1| protein export protein PrsA, putative [Staphylococcus epidermidis
           RP62A]
 gi|291319703|gb|EFE60063.1| foldase PrsA [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329734300|gb|EGG70615.1| putative foldase protein PrsA [Staphylococcus epidermidis VCU045]
 gi|329737249|gb|EGG73503.1| putative foldase protein PrsA [Staphylococcus epidermidis VCU028]
          Length = 325

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 41/188 (21%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---- 283
           E K++S           K+ +S+ E++               +    ++   + ++    
Sbjct: 114 EQKKLSAY--QKQLLLDKVNVSDKEIKEN------------SKKTSHILIKVKSKSSDKE 159

Query: 284 -----------DEAFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLAD 327
                      ++  + ++K   KF ++A+++    S    D SLG   K  + D S   
Sbjct: 160 GLSDKKAKEKAEKIQKEVEKNPNKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVD-SFEK 218

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           ++F L K+G+ + V+   +GY I             F   K +I  ++   K  +K K  
Sbjct: 219 ALFKL-KEGEVSKVVKTDYGYHIIK-----ADKETDFNSEKSNIKQKLIEEKVQKKPKLL 272

Query: 388 YKRLEEFL 395
               +E L
Sbjct: 273 TDAYKELL 280


>gi|330970019|gb|EGH70085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 93

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  ++++ +E    ++ G  F ++A+      S      LGSF    +    
Sbjct: 2   AKATARHILISSEEKCNELKAQIEGGADFAEIAKANSSCPSSRQGGDLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A        +   FGY +  V++ +
Sbjct: 61  FDTVVFS-APVNTVQGPVKTQFGYHLLEVTSRQ 92


>gi|66472646|ref|NP_001018389.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Danio
           rerio]
 gi|82228864|sp|Q503Y7|PIN4_DANRE RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4; AltName: Full=Parvulin-14; Short=Par14; AltName:
           Full=Peptidyl-prolyl cis-trans isomerase Pin4;
           Short=PPIase Pin4; AltName: Full=Rotamase Pin4
 gi|63101795|gb|AAH95126.1| Zgc:110008 [Danio rerio]
 gi|182889122|gb|AAI64671.1| Zgc:110008 protein [Danio rerio]
          Length = 128

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + +K G +F ++A +  +  +     LG  ++  +      D+
Sbjct: 36  KVRHILCEKHGKCMEAMEKIKSGMRFSEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQDA 94

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L      K     P +   FGY I  V   K
Sbjct: 95  AFALPISTMDKPVYTDPPVKTKFGYHIIMVEGKK 128


>gi|331246221|ref|XP_003335744.1| hypothetical protein PGTG_16979 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309314734|gb|EFP91325.1| hypothetical protein PGTG_16979 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 124

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
            V  ++   Q  A EA   LK G  F ++A E  +    +  SLG  ++  +      ++
Sbjct: 32  KVRHILCSKQSNALEAIARLKSGVSFDKVASELSEDKARNGGSLGWMTRGSMVGP-FQEA 90

Query: 329 IFSLAKKGDFTPVI-----HGSFGYVIAHVSNIK 357
            F L      +P+        +FGY +  V   K
Sbjct: 91  AFQLQTSSVGSPIFTDPAIKTNFGYHVIMVEERK 124


>gi|212635970|ref|YP_002312495.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
 gi|212557454|gb|ACJ29908.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
          Length = 92

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSL 325
             T   L+   +++ +E  Q +  G  F  +A+       S     LGSF    +     
Sbjct: 3   QATARHLLVETEEKCEELKQQIIAGADFADVAKANSSCPSSAQGGDLGSFGPGMMVK-EF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            + +FS     +    +   FGY +  V++ 
Sbjct: 62  DEVVFSAPLN-EVQGPVKTQFGYHLLEVTSR 91


>gi|33357145|pdb|1JNS|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
           Isomerase Parvulin 10
 gi|33357146|pdb|1JNT|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
           Isomerase Parvulin 10
          Length = 92

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 8   HILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 66

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 67  SCPVL-EPTGPLHTQFGYHIIKV 88


>gi|94313616|ref|YP_586825.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
           metallidurans CH34]
 gi|93357468|gb|ABF11556.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
           metallidurans CH34]
          Length = 291

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 16/233 (6%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
             V G+  +   LD A R   +  +        + +        +     +++  +  +A
Sbjct: 48  AVVNGVPIAQTQLDDALRVARQADTPQMRQFFTQELIVREVLRQSAEKDGYDRRPEVVQA 107

Query: 227 PEYKRISY-ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
               + S      + +  +   I++ +++A Y++        E + V  +   + + A  
Sbjct: 108 ANTAKASAEAELYLRDNLRLDPITDAQVKARYDEVVSMMGKEEYK-VRIISVADDRTART 166

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLADSIFSLAK 334
             + L+ G  F +L      + S    G              K     V++A+++  L  
Sbjct: 167 VLEKLRAGVSFDELVRMYSVASSKEGGGEMPWITFRVPVVEGKSQGVPVAVAEAVSHLEV 226

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM---RITKASEKV 384
                  +      VI  +   + +   +F +VK DI  Q+    + KA   V
Sbjct: 227 GAVTQEPVVVDNLRVIVRLDAKRATQVPAFDDVKDDIRRQLHIVALNKARADV 279



 Score = 38.0 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 48/163 (29%), Gaps = 3/163 (1%)

Query: 351 AHVSNIKPSFTVS-FQEVKKDIANQMRITKASEKVKEDYKR-LEEFLALGTSMDEISRRE 408
             +  I  +   + + EV   +  +    +      +   R + E L  G S DE+ R  
Sbjct: 125 LRLDPITDAQVKARYDEVVSMMGKEEYKVRIISVADDRTARTVLEKLRAGVSFDELVRMY 184

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPY-KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
            + S      +      +   V          +       +  +      + D   + V+
Sbjct: 185 SVASSKEGGGEMPWITFRVPVVEGKSQGVPVAVAEAVSHLEVGAVTQEPVVVDNLRVIVR 244

Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
           +      +    ++V  D+++    V   +  +     L+   
Sbjct: 245 LDAKRATQVPAFDDVKDDIRRQLHIVALNKARADVVGNLMQAA 287


>gi|182679969|ref|YP_001834115.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182635852|gb|ACB96626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 303

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 81/280 (28%), Gaps = 48/280 (17%)

Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
           G++     +   I   P                 +            +    +   +   
Sbjct: 32  GMDVSMKEIRARIDLLPETDRATLTKDPAQLTQFVR----------GYLADRVLLREAHD 81

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
                  P    LDQA         +  +            P+ A +   ++  K    A
Sbjct: 82  TGFDQKTPIKARLDQAHDALLMELYLQSVTHVPDTY-----PTEAEVRAAYDANKSALIA 136

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           P   +++ I     +                ++ K+     E               DE 
Sbjct: 137 PRRYQLAQIFIAAPKI---------------DQTKDDKTKDEK---------TSARLDEL 172

Query: 287 FQSLK-KGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
            + L+ K   F  LA E       +     +G  ++  +    +  ++  L K G  T  
Sbjct: 173 MKKLQGKSGDFEVLAREYSDAKAEAAKGGEIGWLAEPSLM-PEIRQAVSGLTK-GATTAP 230

Query: 342 IHGSFGYVIAHVSNIKPS--FTVSFQEVKKDIANQMRITK 379
           I  + G+ I H+ +I+ +    + F EVK  +A QMR  +
Sbjct: 231 IRLNDGWHILHILDIREAGSEPLPFTEVKGPLAEQMRRQR 270


>gi|283779709|ref|YP_003370464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
           DSM 6068]
 gi|283438162|gb|ADB16604.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
           DSM 6068]
          Length = 490

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/378 (13%), Positives = 105/378 (27%), Gaps = 65/378 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS--VGLDKKILDNLVSGA 97
           S  V  VG Q V          Q +G    +       E   S      K +L  ++   
Sbjct: 132 SQIVARVGNQFVLAGDVDAIVNQMIGPALARAKSDQEREAIESSRANASKMVLQRMIDMK 191

Query: 98  TL----DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG-----INE 148
            L    ++ IE          +   I          ++   D F   LA           
Sbjct: 192 VLYGDFERNIEKNAGRDKLDEIRKNI----------DRRMRDQFEKELASMREKVRKAKP 241

Query: 149 KEYIDHYTKM-----LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN----N 199
            E      +      ++                LL           R      L      
Sbjct: 242 AELQAMLARDPQMPVVAMLMEEHQIENLGDLDLLLRKYGSSLEKTQRYYRESTLGRSQVA 301

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
            +V  I + ++  +  +++ + +++                           + +A +E 
Sbjct: 302 ENVREIPEVTHKAMLDYYQSHAEDFAL-------------------------QARARFEM 336

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS--- 316
              K+     R              +    +  G  F  +A++  +  S    G F    
Sbjct: 337 MSVKFVGFPTRQAAYQTIG------QMGNEVFYGAPFESVAKKYSQDPSASRGGYFDWTQ 390

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           +  +    L  ++FSL + G  + ++    GY I  V   + + +V F+  +  I + + 
Sbjct: 391 QGALSTEVLDRAVFSL-EPGKLSQILEDERGYYIVRVIEREEAGSVPFEVAQTKIKDAIE 449

Query: 377 ITKASEKVKEDYKRLEEF 394
                E  +    ++++ 
Sbjct: 450 TQYREENYRNYLTKVKQQ 467


>gi|148652482|ref|YP_001279575.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
 gi|148571566|gb|ABQ93625.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
          Length = 317

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 98/295 (33%), Gaps = 31/295 (10%)

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
             +     LA E  N +  I    + L    V G+ +     +  L         +   +
Sbjct: 31  DQEFIQKALAEERSNHQNLIASSREELPTVRVNGVVIDKQAIAQELQYHPAPTKEDALFL 90

Query: 193 DYIVLNNRHVPAIADPSNAVL-TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
               L  R +   A   +  L    +E  ++            I   + +         D
Sbjct: 91  ATQALVVRELLKNAVLDDDTLGQAAWEANEEQ----------AISDLIEKNVTASTPDGD 140

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPN-----------QKEADEAFQSLK----KGKKF 296
             +  YE+NK  Y +  I +V  ++  +           +K+A E  + +        +F
Sbjct: 141 TCERYYEQNKADYKTAPIMSVRHILLASLPEDGEERLALKKQAYELIEQINNSTNADAEF 200

Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           I+LA +     S      LG  ++           +FS+ +    +PV    +G+ I  V
Sbjct: 201 IELARQYSACPSKEQGGELGVLTQGQTV-PEFESVVFSMDEGLAPSPV-ETRYGFHIVQV 258

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            + +P   + + + K  IAN++        + +    L E   +     E+++  
Sbjct: 259 LDKQPGVQLDYLQAKPAIANKLAQQAFHHGLCDYLYTLAEQAEIDGIQMELAQEN 313


>gi|229366844|gb|ACQ58402.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Anoplopoma
           fimbria]
          Length = 127

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      D+
Sbjct: 35  KVRHILCEKHGKCMEAMEKLKAGVRFSEVASQYSEDKARQGGDLGWMTRGSMVGP-FQDA 93

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L      K     P +   FGY I  V   K
Sbjct: 94  AFALPISSMDKPVYTDPPVKTKFGYHIIMVEGKK 127


>gi|153834526|ref|ZP_01987193.1| peptidyl-prolyl cis-trans isomerase C [Vibrio harveyi HY01]
 gi|156976478|ref|YP_001447384.1| peptidyl-prolyl cis-trans isomerase C [Vibrio harveyi ATCC
           BAA-1116]
 gi|269962816|ref|ZP_06177156.1| peptidyl-prolyl cis-trans isomerase C [Vibrio harveyi 1DA3]
 gi|148869045|gb|EDL68086.1| peptidyl-prolyl cis-trans isomerase C [Vibrio harveyi HY01]
 gi|156528072|gb|ABU73157.1| hypothetical protein VIBHAR_05251 [Vibrio harveyi ATCC BAA-1116]
 gi|269832370|gb|EEZ86489.1| peptidyl-prolyl cis-trans isomerase C [Vibrio harveyi 1DA3]
          Length = 92

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++  Q LKKG KF  LA++     S      LG F +  +         F
Sbjct: 9   HILVKHKEQAEDIIQQLKKGAKFQTLAKKYSTCPSGKRGGDLGEFRRGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GEVLTPHLVKTKFGWHVVKV 88


>gi|317494801|ref|ZP_07953212.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316917126|gb|EFV38474.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 93

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K+A +  + LK G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKQALDLLEQLKNGGDFEKLAKKHSICPSGRKGGHLGEFKQGAMV-PAFDKVVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L +       +H  FGY I  V
Sbjct: 68  SCPLLEP---YGPLHTQFGYHIIKV 89


>gi|261417353|ref|YP_003251036.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373809|gb|ACX76554.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327407|gb|ADL26608.1| PPIC-type PPIASE domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 335

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 107/369 (28%), Gaps = 77/369 (20%)

Query: 29  GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88
           G++ A    S S  V+ V +  +       S    LG   Q  G  +  E      L   
Sbjct: 18  GIASAQLMNSKSLDVIRVEKTGISAGKID-SLATMLGQ-QQAPGQKLTDEM--MTQLRYA 73

Query: 89  ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
           ++DNLV    +    + +G++    +V      + LF  +        F   L +     
Sbjct: 74  VVDNLVGQELIKLEAKKMGIKVAPAKVDSL---TNLFKKQFPSED--AFQKELKKSNTTM 128

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
           K++ +     L    ++                                  + VP  + P
Sbjct: 129 KQFKEKIEDQLKSEQILE---------------------------------KKVPYPSAP 155

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +   L  +++  K                          IS   +          + S +
Sbjct: 156 TEKDLEAFWQLNKSK------------------VAINDTISGARI----------FISTK 187

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSL 325
            +  +++          A Q   K   F QLA            G    +++      + 
Sbjct: 188 GKNAQEISDAKDMLKGLAAQVRSKKATFAQLAAMYSDDKEAKKTGGIMNKFVAKSKSAAF 247

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
           A ++    K GD + VI  + G  I  ++         F+  K  I   +R+    E+  
Sbjct: 248 AKAV-GKIKVGDISEVITENDGVSIFMLTEKNDGK---FESYKHQIDYILRVQAEQERQA 303

Query: 386 EDYKRLEEF 394
           +    L++ 
Sbjct: 304 KLKAYLDDL 312


>gi|261343042|ref|ZP_05970900.1| peptidyl-prolyl cis-trans isomerase [Enterobacter cancerogenus ATCC
           35316]
 gi|288314605|gb|EFC53543.1| peptidyl-prolyl cis-trans isomerase [Enterobacter cancerogenus ATCC
           35316]
          Length = 93

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + LK G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLAQDLLEQLKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           S     + T  +H  FGY +  V   K
Sbjct: 68  SCPVL-EPTGPLHTQFGYHVIKVLYRK 93


>gi|114051057|ref|NP_001040140.1| peptidyl-prolyl cis-trans isomerase [Bombyx mori]
 gi|87248189|gb|ABD36147.1| peptidyl-prolyl cis-trans isomerase [Bombyx mori]
          Length = 135

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G+KF  +A    +  +     LG  ++  +      D+
Sbjct: 43  KVRHILCEKQSKCLEALEKLKAGQKFPDVAAAYSEDKARQGGDLGWMTRGSMVGP-FQDA 101

Query: 329 IFSL-----AKKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L            P +    GY I  V   K
Sbjct: 102 AFALPISSVTNPVYTNPPVKTKLGYHIIMVEGKK 135


>gi|260774240|ref|ZP_05883155.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio metschnikovii CIP
           69.14]
 gi|260611201|gb|EEX36405.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio metschnikovii CIP
           69.14]
          Length = 92

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++ADE  Q LKKG KF  LA++     S      LG F +  +   +   + F
Sbjct: 9   HILVKHKEQADELLQQLKKGAKFQTLAKKYSLCPSGKRGGDLGEFRQGQMV-PAFDKACF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
               +G+          FG+ +  V
Sbjct: 68  ----QGEILTPQLVKTKFGWHVIKV 88


>gi|254249300|ref|ZP_04942620.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
 gi|124875801|gb|EAY65791.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
          Length = 410

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 72/234 (30%), Gaps = 11/234 (4%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD-NYR 225
             V  M  +   +D       +  +        R +        A     +    +    
Sbjct: 171 AVVNNMPIAQSDVDAIVSASGQADTPALRDAVKRDLIVRQLVEQAADKANYGSRPEVQGI 230

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
               +  +     + +      +++ +++A Y+         E R  E +   +  +A+ 
Sbjct: 231 VSRARANAAADLYLRDALGAQRVTDAQVKAHYDYIVANAAQFEYR-AEVVAVADPAKANA 289

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGS--------FSKEYIPDVSLADSIFSLAKKGD 337
           A   LK+G  F  +A++   + +                +     + LA ++ SL K G 
Sbjct: 290 AAAELKQGAAFDTVAKKYNTTANGGVAEWSELKTPLAEGRTGGLPMPLAQAMTSL-KPGA 348

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            +  I     Y    + + +P    SF + K  +  Q+        +     +L
Sbjct: 349 VSGPIRIGNAYAFVKLDDKRPVVVPSFDKAKGVLRQQLEQQARQSAMTALVDKL 402


>gi|91228750|ref|ZP_01262661.1| peptidyl-prolyl cis-trans isomerase C [Vibrio alginolyticus 12G01]
 gi|153838954|ref|ZP_01991621.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           AQ3810]
 gi|254229070|ref|ZP_04922490.1| peptidyl-prolyl cis-trans isomerase C [Vibrio sp. Ex25]
 gi|260903134|ref|ZP_05911529.1| foldase protein PrsA [Vibrio parahaemolyticus AQ4037]
 gi|262396656|ref|YP_003288509.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio sp. Ex25]
 gi|269966089|ref|ZP_06180179.1| peptidyl-prolyl cis-trans isomerase C [Vibrio alginolyticus 40B]
 gi|91187696|gb|EAS74017.1| peptidyl-prolyl cis-trans isomerase C [Vibrio alginolyticus 12G01]
 gi|149747588|gb|EDM58518.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           AQ3810]
 gi|151938361|gb|EDN57199.1| peptidyl-prolyl cis-trans isomerase C [Vibrio sp. Ex25]
 gi|262340250|gb|ACY54044.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio sp. Ex25]
 gi|269829236|gb|EEZ83480.1| peptidyl-prolyl cis-trans isomerase C [Vibrio alginolyticus 40B]
 gi|308107784|gb|EFO45324.1| foldase protein PrsA [Vibrio parahaemolyticus AQ4037]
 gi|328470253|gb|EGF41164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Vibrio
           parahaemolyticus 10329]
          Length = 92

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++  + LKKG KF  LA++     S      LG F +  +         F
Sbjct: 9   HILVKHKEQAEDIIKQLKKGAKFQTLAKKYSTCPSGKRGGDLGEFRRGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GEVLTPHLVKTKFGWHVVKV 88


>gi|118580921|ref|YP_902171.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
 gi|118503631|gb|ABL00114.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
          Length = 93

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 5/94 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              +   ++   ++   +  Q ++ G  F   A +     S      LG F    +    
Sbjct: 2   ARASARHILVSTEEACLKLKQEIEAGADFAACARDHSLCPSSRQGGELGEFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
             + +FS A+ G     +   FGY +  V+    
Sbjct: 61  FDEVVFS-AEVGTVQGPVKTQFGYHLVEVTRRTA 93


>gi|327541306|gb|EGF27848.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopirellula
           baltica WH47]
          Length = 350

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 94/292 (32%), Gaps = 28/292 (9%)

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
           +    +        G   ++ + +    ++R+ +V      M     LL+Q      + R
Sbjct: 33  RVDAQLSRMLAQASGEVPEDELHYVKLRMTRSLLVQTIQSRMLREAFLLEQVGTAAADKR 92

Query: 191 SVDYIVLNNRH------------VPAIADPSNAVLTQWF--EKYKDNYRAPEYKRISYI- 235
                 +  +             +      S A L      E     +R  E+       
Sbjct: 93  REAEATMAAKARQMFYETELPGLMKKANVDSKAELDDLLRKEGSSLAFRQREFMDQMLGS 152

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSL 290
           L+   +  K   +S  E+   Y++++ KY        EQL         +  A      +
Sbjct: 153 LYIRSKVNKDPAVSLSEIVRYYQEHQSKYEHKARARWEQLTVMFSNHATRDAARSKLSQM 212

Query: 291 KK----GKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                 G     +A+ Q +   + S       ++  +    L   IFSL   G+ + VI 
Sbjct: 213 ANEALYGGSMTSVAKAQSEEPFASSGGLHDWTNQGSLVSTILDQQIFSLP-IGEMSDVIE 271

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
            +  Y +  V   + +      E++ DI++ +R  K     +E    + + +
Sbjct: 272 DNDAYHVIRVLEREDAGVTPVGELQDDISDILRQQKIRADQEEVMVEVRQRV 323


>gi|225621308|ref|YP_002722566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brachyspira
           hyodysenteriae WA1]
 gi|225216128|gb|ACN84862.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brachyspira
           hyodysenteriae WA1]
          Length = 317

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/387 (14%), Positives = 125/387 (32%), Gaps = 98/387 (25%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           ++V  + F+    S+ LF+   +S V  VG   + +  F++  K  L + ++ IG  V  
Sbjct: 4   IIVFILSFIFI-QSNLLFNDVVNSIVGIVGSMPITYEDFLSR-KTFLTLQARSIGQKVTD 61

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
           +          +  +LV    +   +++     +   V   +        K    + D F
Sbjct: 62  DM---------VYKDLVEERVMYLKLKENNFVIEENDVKRRLESI----AKQYNMNADQF 108

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
             +L  EGI+ +EY +   K ++  ++ G+ V                            
Sbjct: 109 AKQLMAEGISYEEYKNSIKKQIAMENLYGLVVNNT------------------------- 143

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDN--YRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
                    + S+    +++   KD   + A    ++S+I F      +K E        
Sbjct: 144 ---------EISDKEADEFYNNTKDKSAFEADTLVKLSWIFFKAATFTEKGE-------- 186

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDIS 311
                                   Q+ A +      +G+ F +LA++  +      +   
Sbjct: 187 -----------------------KQELASKVRGMAARGQDFAELAKQYSEDEATRKNGGD 223

Query: 312 LGS---FSKEYIPDVSLADSIFSLA----KKGDFTPVIH-GSFGYVIAHVSNIKPSFTVS 363
           LG    +        +  ++  +LA    K G  + V      G+ I  +  I+      
Sbjct: 224 LGYNLLYDAGKRSLPAQINAGLNLAKRGYKVGTVSSVRELVGKGFYIVKIMEIE----KD 279

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
            + ++  + N +   K  E   +    
Sbjct: 280 MESIRTRVKNYLSEAKMRESFIKWLDE 306


>gi|163800282|ref|ZP_02194183.1| peptidyl-prolyl cis-trans isomerase C [Vibrio sp. AND4]
 gi|159175725|gb|EDP60519.1| peptidyl-prolyl cis-trans isomerase C [Vibrio sp. AND4]
          Length = 92

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++  Q LKKG KF  LA++     S      LG F +  +         F
Sbjct: 9   HILVKHKEQAEDIIQQLKKGAKFQTLAKKYSTCPSGKKGGDLGEFRRGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GEVLTPHLVKTKFGWHVVKV 88


>gi|312961354|ref|ZP_07775859.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens WH6]
 gi|311285012|gb|EFQ63588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens WH6]
          Length = 93

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++   + + +E    ++ G  F ++A+      S      LGSF    +    
Sbjct: 2   AKATARHILVSTEDKCNELKAQIEGGADFAEVAKANSSCPSSRQGGDLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A        +   FGY +  V++ +
Sbjct: 61  FDTVVFS-APVNTVQGPVKTQFGYHLLEVTSRQ 92


>gi|239947019|ref|ZP_04698772.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921295|gb|EER21319.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 295

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 65/190 (34%), Gaps = 16/190 (8%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           L+++   F  + ++ A       + V SV  + +  + F    K  +      +  V + 
Sbjct: 4   LLLIITVFFTFNVAQASL----PNIVASVNDEPITLNEFRARKKMIMA-----LNNVESL 54

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
             A+   L   ++ +L+  + L Q+  D   E     +   I          NK  H   
Sbjct: 55  TPAQDKQLSDLVIKSLIDESLLFQYAGDR--EIPQEEIDNAIKSIE----DRNKMPHGSL 108

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIV 196
           +  L    +N   +I      L + +++      ++ SN  +D A     +    +   V
Sbjct: 109 LQYLKSRSVNPDSFISQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQKDVEISMQV 168

Query: 197 LNNRHVPAIA 206
             ++     A
Sbjct: 169 FTSKDGGNKA 178


>gi|73542615|ref|YP_297135.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
 gi|72120028|gb|AAZ62291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
          Length = 272

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 12/164 (7%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           + ++ K   +S+ +++A Y+         E +    +   ++  A  A   +K G+ F +
Sbjct: 102 LKDRIKPAPVSDADVKARYDAIVATLGDKEYK-ARLIQVGDEAGAKAALARIKSGEDFAK 160

Query: 299 LAEEQGKSLSDISLGSF-----------SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           +AE    + S  S G              K     + +A ++  L         I  +  
Sbjct: 161 VAEAVSLAPSKASGGQMDWISFKVPVQEGKTQNLPLPIAQALAVLPAGAVTATPIAWNNH 220

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           Y +  +  ++P+   +F++ K  I   ++             +L
Sbjct: 221 YYLMKLDEVRPTQVPTFEQTKPGIQQALQAQALERATTALVTQL 264



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 74/248 (29%), Gaps = 25/248 (10%)

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           +A   S++ ++  +  V+  L     A        +       +L  +   KD  L    
Sbjct: 24  VAHAASVNGVAIPDSQVTATLQQSRLADTPQARSAITQQLIARELFRQEAAKDKSLESRP 83

Query: 455 TVA--LPDGSYMWVQ---IKESIPARDRKLEEVL---TDVKKDWKTVKTAEEV----SSK 502
            V   + D     +    +K+ I        +V      +       +    +       
Sbjct: 84  DVQQAIRDARTAILTQAWLKDRIKPAPVSDADVKARYDAIVATLGDKEYKARLIQVGDEA 143

Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---------INRMDNENKFFGYDGISQVF 553
             +  L   K G++F  + + +  +    +          +   + + +         + 
Sbjct: 144 GAKAALARIKSGEDFAKVAEAVSLAPSKASGGQMDWISFKVPVQEGKTQNLPLPIAQALA 203

Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----SVIAY 609
             P   V   PI     Y + K+   +   V   ++    + Q +    L+    +++  
Sbjct: 204 VLPAGAVTATPIAWNNHYYLMKLDEVRPTQVPTFEQTKPGIQQALQAQALERATTALVTQ 263

Query: 610 LKSQYSVT 617
           L ++  V+
Sbjct: 264 LLAKAKVS 271


>gi|254456904|ref|ZP_05070332.1| peptidyl-prolyl cis-trans isomerase [Campylobacterales bacterium GD
           1]
 gi|207085696|gb|EDZ62980.1| peptidyl-prolyl cis-trans isomerase [Campylobacterales bacterium GD
           1]
          Length = 92

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++  ++ E +     ++ G  F  +A+   +  S      LG F    +       
Sbjct: 5   TARHILVASEDECNTLKAEIENGASFESVAQAHSQCPSGAQGGDLGQFGPGQMV-PEFDK 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           ++FS    G     I   FGY +  V++ 
Sbjct: 64  AVFS-GDVGVLYGPIQTQFGYHLLEVTSR 91


>gi|288800858|ref|ZP_06406315.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288332319|gb|EFC70800.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 463

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 68/209 (32%), Gaps = 30/209 (14%)

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY--FSPEIRT 271
            Q  + +K+     E K+         +  K I ++  +++  +E          P    
Sbjct: 137 QQMHDDFKNRLLIQEMKK---------KLVKDIAVTPGDVRRYFESLPADSIPTIPTAVE 187

Query: 272 VEQL----------VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSK 317
           VE +          +   + E  E  + + KG+  F  LA    +       G    ++ 
Sbjct: 188 VEIITMLPRVSQEEIAKVKNELREYTERVTKGETSFATLARLYSEDPGSARQGGEMDYTG 247

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             + D + A   F+L      + ++   FGY I  + + +         V+  +   +  
Sbjct: 248 RGMFDPAFAAVAFNLTDPKKISKIVETEFGYHIIQLIDKRGDKVK----VRHILRKPVVS 303

Query: 378 TKASEKVKEDYKR-LEEFLALGTSMDEIS 405
            +  E  K      L +      + ++ +
Sbjct: 304 AEIVEATKVKMDSLLADLRDGKFTFEDAA 332


>gi|322834954|ref|YP_004214981.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602]
 gi|321170155|gb|ADW75854.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602]
          Length = 122

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIF 330
            ++   + +A +  + LK G  F +LA++     S      LG F +  +   +    +F
Sbjct: 38  HILVKEEAQALDLLEQLKNGGDFEKLAKKHSTCPSGKKGGHLGEFKQGAMV-PAFDKVVF 96

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     +    +H  FGY I  +
Sbjct: 97  SAPLI-EPQGPLHTQFGYHIIKI 118


>gi|15599371|ref|NP_252865.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           PAO1]
 gi|218889495|ref|YP_002438359.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           LESB58]
 gi|254237056|ref|ZP_04930379.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           C3719]
 gi|254242860|ref|ZP_04936182.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           2192]
 gi|9950385|gb|AAG07563.1|AE004834_3 peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           PAO1]
 gi|126168987|gb|EAZ54498.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           C3719]
 gi|126196238|gb|EAZ60301.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           2192]
 gi|218769718|emb|CAW25478.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           LESB58]
          Length = 93

 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  ++ + +E   +++ G  F ++A E     S     +LGSF    +    
Sbjct: 2   ARATARHILVSSEAKCNELKTAIEGGADFAEVAREHSSCPSGRDGGNLGSFGPGQMV-RE 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS          +   FGY +  V++ +
Sbjct: 61  FDQVVFSAPLN-VVQGPVKTQFGYHLLEVTSRQ 92


>gi|227818745|ref|YP_002822716.1| hypothetical protein NGR_b05010 [Sinorhizobium fredii NGR234]
 gi|36958998|gb|AAQ87423.1| Hypothetical protein RNGR00297 [Sinorhizobium fredii NGR234]
 gi|227337744|gb|ACP21963.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
          Length = 291

 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 37/208 (17%)

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
            R    +         IA+P    L Q+++ + D +R        ++ F    +      
Sbjct: 95  RRLAQKLTFLIEDAARIAEPKEDDLRQFYDAHPDMFRQEARVSFDHVFFSGSRRPDAA-- 152

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
              E +     +     +  I   +Q +         A   LK GK+   +A + G    
Sbjct: 153 --AEARRVLAASGGPDQTAIIDQGDQWL---------AAAGLKAGKE-SDIAAQFG---- 196

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
                          + A ++ +L   G++   I  ++G  +  V  + P+    F EVK
Sbjct: 197 --------------PAFARAVVALP-TGEWMGPIESAYGQHLVRVYEVVPAAGRPFAEVK 241

Query: 369 KDIANQMRITKA----SEKVKEDYKRLE 392
            ++  Q R  +          E  K+ E
Sbjct: 242 AEVLAQWRDEQRRNYERRYFAELLKKYE 269



 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 10/126 (7%)

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
           F +     D  +   ++++        A  D   + +AA   K      +  +  P    
Sbjct: 142 FFSGSRRPDAAAEARRVLAASGGPDQTAIIDQGDQWLAAAGLKAGKESDIAAQFGPAFAR 201

Query: 454 HTVALPDGSYM----------WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
             VALP G +M           V++ E +PA  R   EV  +V   W+  +         
Sbjct: 202 AVVALPTGEWMGPIESAYGQHLVRVYEVVPAAGRPFAEVKAEVLAQWRDEQRRNYERRYF 261

Query: 504 NQLVLE 509
            +L+ +
Sbjct: 262 AELLKK 267


>gi|71278338|ref|YP_270156.1| peptidyl-prolyl cis-trans isomerase C [Colwellia psychrerythraea
           34H]
 gi|71144078|gb|AAZ24551.1| peptidyl-prolyl cis-trans isomerase C [Colwellia psychrerythraea
           34H]
          Length = 92

 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A E    L KG  F  LA++     S      LG F +  +   +  D +F
Sbjct: 8   HILVKTEKLAVELKTQLDKGANFGALAKKHSLCPSKKKGGDLGEFRRGQMVK-AFDDVVF 66

Query: 331 S--LAKKGDFTPVIHGSFGYVIAH 352
              L K       I   FGY +  
Sbjct: 67  KRPLLK---VHGPIKTKFGYHLIK 87


>gi|332974542|gb|EGK11462.1| peptidyl-prolyl cis-trans isomerase [Kingella kingae ATCC 23330]
          Length = 293

 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/272 (10%), Positives = 92/272 (33%), Gaps = 10/272 (3%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
            + +   G               +    G           + ++        +    + L
Sbjct: 22  QTVVTVNGTKIDSSELDARAKFVQQQSQGKVQDTPELRQYIANEVVLETVVTQEAKRLQL 81

Query: 198 NNRHVPAIADPSN-AVLTQWFEKYKDNYRAPEYKRISYILFD--VHEKEKKIEISNDELQ 254
           +        +        +     + +++    +  + +L D    +  KK  +S+ ++Q
Sbjct: 82  DKSSEYKTVEADALKQAREKGLDKQPDFKGNWARFQNQLLMDVYAQDVAKKNPVSDADVQ 141

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI---- 310
             Y+  K +Y + +   + ++V   + +A  A + L   K F  +A++     +      
Sbjct: 142 KRYDDIKSRYHNTDEVQLGEIVTDKEDQAKAAIRELGAKKSFADVAKKYSIDPAVKAGQP 201

Query: 311 ---SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
                 S          + +++ +L K       + G   +V+ + ++ +     +F ++
Sbjct: 202 ALNEYTSLVDLKDGRPKIFEAVQNLKKGEYTRNAVKGEGIFVVFYANDKRKITVPAFDQI 261

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
           + ++ ++++  +    V +  ++ +   A G 
Sbjct: 262 RDNVRDELQQERVQAAVGKLMQQAKIVPADGK 293


>gi|66046132|ref|YP_235973.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
 gi|257484577|ref|ZP_05638618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289650297|ref|ZP_06481640.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298486854|ref|ZP_07004910.1| Peptidyl-prolyl cis-trans isomerase ppiC [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|302189910|ref|ZP_07266583.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae 642]
 gi|63256839|gb|AAY37935.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
 gi|298158721|gb|EFH99785.1| Peptidyl-prolyl cis-trans isomerase ppiC [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330890128|gb|EGH22789.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330901187|gb|EGH32606.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. japonica str. M301072PT]
 gi|330944508|gb|EGH46494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. pisi str. 1704B]
 gi|330950414|gb|EGH50674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           Cit 7]
 gi|330980416|gb|EGH78519.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
 gi|330988826|gb|EGH86929.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331008138|gb|EGH88195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 93

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  ++++ +E    ++ G  F ++A+      S      LGSF    +    
Sbjct: 2   AKATARHILVSSEEKCNELKAQIEGGADFAEIAKANSSCPSSRQGGDLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A        +   FGY +  V++ +
Sbjct: 61  FDTVVFS-APVNTVQGPVKTQFGYHLLEVTSRQ 92


>gi|113866541|ref|YP_725030.1| peptidyl-prolyl cis-trans isomerase (rotamase c)protein [Ralstonia
           eutropha H16]
 gi|113525317|emb|CAJ91662.1| Peptidyl-prolyl cis-trans isomerase (rotamase c)protein [Ralstonia
           eutropha H16]
          Length = 491

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 62/477 (12%), Positives = 129/477 (27%), Gaps = 93/477 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +     ++   +  G +    G  V   RA  +G   ++L+ LV     
Sbjct: 80  DEVVAVVNNSVITRRELLDRADEIEGQLRA-AGRPV-PARADLLG---EVLERLVMERVQ 134

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ++ G+      +   I        + N+ +      R+   G+   +Y +   K  
Sbjct: 135 TQAAQEAGIRVTDQEIDRAIESV----AQQNRLNATELRRRVEASGMTWTKYREELRKQ- 189

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                                           V  I L  R V +     +  +  +   
Sbjct: 190 --------------------------------VQVIRLREREVDSKVQVYDGEIDNYLAA 217

Query: 220 YKDNYRA--PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
                 A  P    ++ IL  V                   +N         R       
Sbjct: 218 RGGQGAASGPTEYNVAQILVRVP------------------ENASDAQKQAQR------- 252

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
               +A+   +  + G  F QLA+      ++    ++G      +P +  A+++  L  
Sbjct: 253 ---AKAEGLLKQAQGGADFAQLAQANSEGPEAAQGGAMGFREIGRLPAL-FANAVVDLQA 308

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI-------TKASEKVKED 387
            G    V+  + G+ +  +   + +   S     K    Q+R             + +  
Sbjct: 309 GGVAPQVVESAAGFHVVKLVAKRAAPASSPAAASKITQTQVRHILIRTGPNMPEAEARRQ 368

Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
              L + +  G    + ++R              G    G+ V         L      +
Sbjct: 369 LSTLRDRITHGGDFADAAKRFSQDG-SAQNGGDLGWVSPGELVPEFEQAMSRLRPNEISE 427

Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKL--EEVLTD----VKKDWKTVKTAEE 498
             +++     +     +  +  E  P + R     EV          DW     ++ 
Sbjct: 428 PVVTQFGVHLIQ---VLNRRETEMSPEKQRDFARAEVREQKLRAAYDDWVRQLRSQA 481


>gi|124265396|ref|YP_001019400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylibium
           petroleiphilum PM1]
 gi|124258171|gb|ABM93165.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylibium
           petroleiphilum PM1]
          Length = 437

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 64/473 (13%), Positives = 136/473 (28%), Gaps = 89/473 (18%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V R+ V  +         L   + + G  +  +      L +++LD L+        
Sbjct: 40  VAIVDRELVTNAEVQQRL-AALRREAAQSGQALPPDD----ELRRRMLDTLIDERAQLSA 94

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
             + G+  D   +   +          N+ +      RL R+GI    +  +    L   
Sbjct: 95  ARESGVRIDEAELDRTVGNVAA----QNRITLAQLRERLQRDGIEFSRFRSNLRDQLLLE 150

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            V                                   R V +    S++ +       + 
Sbjct: 151 RVRE---------------------------------REVQSRIKISDSEVETLL-ASRA 176

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
           +  AP    ++ +L  V E   + E+                     R V          
Sbjct: 177 SGVAPPQFNVAQLLIGVPEGAGEAEL-------------------AQRRV---------L 208

Query: 283 ADEAFQSLKKGKKFIQLAEE--QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           A++A Q  + G+ F +L  E   G      +LG  + + +PD+  AD++  L        
Sbjct: 209 AEQALQRARGGEDFARLVNELSTGSKEQGGALGLRTLDRLPDL-FADAVRDLRGGAIVPQ 267

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-T 399
           V+    G+ +  V   +    +  Q   + I  +                 ++ +  G  
Sbjct: 268 VLQSGAGFHVLKVVERRDGGMMVPQTRARHILLRTSAQLTQSAAVARLAEFKQQVDSGKA 327

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           S  +++R       +       G+         +P  E+ +  +          + V+ P
Sbjct: 328 SFAQLARENS----EDGSAAQGGELGWASPGQFVPEFEEAMKAL--------GINQVSDP 375

Query: 460 DGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
             S   V + + +  R   ++  +     +   +  K        A  +    
Sbjct: 376 VVSRFGVHLIQVLERRSVPVDRKQQREIARNVLREQKFESAYQEWARDVRARA 428


>gi|262374583|ref|ZP_06067857.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205]
 gi|262310579|gb|EEY91669.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205]
          Length = 361

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 91/257 (35%), Gaps = 34/257 (13%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-----IADPSNAVLT 214
           SR ++  + V G+      + Q  +++      D + L  + +       +A  S+  L 
Sbjct: 97  SRDELPSVLVNGVMIDRTAIAQEVQYHPAKNKEDAVFLATQALVVRELLRLAIVSDNELG 156

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           +        +   E K IS ++    +  K         +  YE+N E + +  + +V  
Sbjct: 157 E------SAWAEDEEKAISALI---DKNVKATIPDAATCERYYEQNIEDFITDPVMSVRH 207

Query: 275 LVFPNQKEADEAFQSLKK---------------GKKFIQLAEEQGKSLS---DISLGSFS 316
           ++     E  E    LKK                  FI+LA +     S      LG  S
Sbjct: 208 ILLACLPEDGEERLKLKKTAYDYIEQIQSDSNPAAAFIELARQHSACPSKEQGGDLGVIS 267

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           K           +F L + G     I   +G+ +  V N +    +++++V   I+N++ 
Sbjct: 268 KGQTV-PEFEKVLFKL-ETGLAPSPIESRYGFHVVDVLNKQQGIQMTYEQVSAAISNKLS 325

Query: 377 ITKASEKVKEDYKRLEE 393
                + + +    L +
Sbjct: 326 QKAFHQSLCDYLFTLAD 342


>gi|255690563|ref|ZP_05414238.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides
           finegoldii DSM 17565]
 gi|260624024|gb|EEX46895.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides
           finegoldii DSM 17565]
          Length = 460

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/367 (11%), Positives = 101/367 (27%), Gaps = 54/367 (14%)

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI----ADPSN 210
               +     +       +        + +     R      L  + +          + 
Sbjct: 97  QRVDMMTNMYIQQIGSKEKMEEYFNKTSTQIRETLRDNARDGLTVQKMQQKLVGEIKVTP 156

Query: 211 AVLTQWFEKYKDNYR--APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           A + ++F+    +     P    +  I         +IE    +L+              
Sbjct: 157 AEVRRYFKDLPQDSIPYIPTQVEVQIITLQPKIPISEIEDVKKKLRDY------------ 204

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323
                                + KG+  F  LA    E++  ++     G   +  + D 
Sbjct: 205 ------------------TDRVTKGEIDFSTLARLYSEDKASAIKGGECGFMGRG-MMDP 245

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           + A+  FSL      + ++   FGY I  +   +     +       +  ++   + +E 
Sbjct: 246 AYANVAFSLQDPKKVSKIVESEFGYHIIQLIEKRGDRVNTR---HILLRPKVSEKELTEA 302

Query: 384 VKEDYKRLEEFLALGTSMDEIS-------RREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
                   ++  A   S DE +              I + + + +G      ++  +P  
Sbjct: 303 CARLDSIADDIRANKFSFDEAAAVISQDKDTRNNHGIMVNVNEHSGITTSKFQMQDLPQD 362

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
              +       +       +   DG  +   V++K  I      + E   D+K+     +
Sbjct: 363 VAKVVDKMNVGEISKAFTMINEKDGKEVCAIVKLKTKINGHKATIAEDYQDLKEIVMDKR 422

Query: 495 TAEEVSS 501
             E +  
Sbjct: 423 REEMLQK 429


>gi|46125831|ref|XP_387469.1| hypothetical protein FG07293.1 [Gibberella zeae PH-1]
          Length = 470

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYI 320
           K    +   V  ++     + +EA   L  G KF ++A E  +  +    SLG  +K  +
Sbjct: 372 KAKGAQSINVRHILCEKHAKKEEALAKLNDGVKFDEVAREYSEDKARQGGSLGWKTKGSL 431

Query: 321 PDVSLADSIFSLAKKGDFTPVI---HGSFGYVIAHVSNIK 357
            D    +  F+L      +P        FGY I  V   K
Sbjct: 432 -DPKFEEVAFALETSTTNSPKFVEVKTGFGYHIIMVEGRK 470


>gi|26989798|ref|NP_745223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           KT2440]
 gi|148547861|ref|YP_001267963.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           F1]
 gi|170721885|ref|YP_001749573.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           W619]
 gi|24984695|gb|AAN68687.1|AE016497_12 peptidyl-prolyl cis-trans isomerase C [Pseudomonas putida KT2440]
 gi|148511919|gb|ABQ78779.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           F1]
 gi|169759888|gb|ACA73204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           W619]
 gi|313498898|gb|ADR60264.1| PpiC [Pseudomonas putida BIRD-1]
          Length = 93

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  ++ + +E    ++ G  F ++A+      S      LGSF    +    
Sbjct: 2   ARATARHILVSSEDKCNELKAQIEAGADFAEIAKANSTCPSSRQGGDLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A        +   FGY +  V++ +
Sbjct: 61  FDTVVFS-APVNTVQGPVKTQFGYHLLEVTSRQ 92


>gi|170100132|ref|XP_001881284.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643963|gb|EDR08214.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 98

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLADSI 329
           V  ++     +A EA Q +++G+ F ++A+E  +    +  SLG   +  +   +  D  
Sbjct: 8   VRHILCEKHSKATEALQKIQEGQAFNKVAQEYSEDKAKAGGSLGWMVRGSMVG-AFQDVA 66

Query: 330 FSLAKKGD----FTPVIHGSFGYVIAHVSNIK 357
           F+L          + ++  +FGY I  V   +
Sbjct: 67  FALTPSTVDKPLVSGLVKTNFGYHIIMVEGRR 98


>gi|326692482|ref|ZP_08229487.1| parvulin-like peptidyl-prolyl isomerase [Leuconostoc argentinum
           KCTC 3773]
          Length = 303

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 92/253 (36%), Gaps = 33/253 (13%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++    G +   + L D  K    +    + +V          D S + + Q F+  K  
Sbjct: 28  LMTSDAGKVTEKSFLADLKKSPAGQQAFANTVVTTVLDNKYGGDVSKSDVQQAFDTQKAQ 87

Query: 224 Y------------RAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           Y                  +  I   L      +   ++SN +L+  Y+         + 
Sbjct: 88  YGDAFKTVLASNNMTEAQFKTNIKNNLIMTAAVKANYKVSNSQLEQAYKDYH------QS 141

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF-SKEYIPDVS 324
            T+  +   ++  A +A + LK GK +  + ++         S+  L +F S     D +
Sbjct: 142 TTISMIKAKDEDSAKKAIEDLKSGKSWNDVYKQYTTDKTYEKSNGQLPAFDSTSTSVDSA 201

Query: 325 LADSIFSLAKKGDF-TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI-----T 378
           + D+ F LAK GD+ T  +  +  Y +  +         S   V+  + +++        
Sbjct: 202 IQDAAFKLAKTGDYTTDPVTSNGSYYVIRLDKTT--KKPSLNSVRTQLTDKLVTNFLNDQ 259

Query: 379 KASEKVKEDYKRL 391
           K+S+KV+    ++
Sbjct: 260 KSSDKVQAIIGKI 272



 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 67/227 (29%), Gaps = 37/227 (16%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K    +L V F           ++ S T+++    KV   SF+                 
Sbjct: 3   KFIWGLLVVIFAG---GLIYLGLNSSKTLMTSDAGKVTEKSFL----------------- 42

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
                 +     ++   N V    LD      G +     V         F  +  ++  
Sbjct: 43  ---ADLKKSPAGQQAFANTVVTTVLDN---KYGGDVSKSDVQQ------AFDTQKAQY-G 89

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           D F + LA   + E ++  +    L  T          + SN  L+QA + Y ++ ++  
Sbjct: 90  DAFKTVLASNNMTEAQFKTNIKNNLIMT---AAVKANYKVSNSQLEQAYKDYHQSTTISM 146

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
           I   +      A         W + YK  Y   +    S       +
Sbjct: 147 IKAKDEDSAKKAIEDLKSGKSWNDVYK-QYTTDKTYEKSNGQLPAFD 192


>gi|308272984|emb|CBX29588.1| DNA-directed RNA polymerase subunit beta' [uncultured
           Desulfobacterium sp.]
          Length = 1470

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 96/252 (38%), Gaps = 29/252 (11%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEY---IPDVS 324
            +  ++  +++ A    + ++ G+ F Q+  +  +SL+   D  +G   KE    I D+ 
Sbjct: 577 RMSHIMVSSEEVAKSVHERIRNGEAFSQMVNQYSESLNKKLDGDIGLLRKEEFTRIFDID 636

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
            AD +FS+ ++G+ + +I     Y I  ++  +    + F  +     N+++  K+   +
Sbjct: 637 DADLVFSV-EEGEISEIIPSQDKYHIFQINEKRAE--IPFDAI-----NKVQDKKSLRDL 688

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
            +   R         +   ++ R K +          G  +   ++     K+ ++ +  
Sbjct: 689 VDYAYR----NLGPKATVVLADRLKDIG--FRYSTEGGLSISIGDMIIPAAKKDIIKKAE 742

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
            K   + + +T  L      + ++ +              DV  +       E +     
Sbjct: 743 VKVLEIGRQYTEGLITQGEKYNKVVDIWAKAT-------DDVANEMMNAMKVEPLKDSDG 795

Query: 505 QLVLEYSKEGKN 516
            +VL+  K+GK 
Sbjct: 796 NIVLD--KDGKT 805


>gi|90961451|ref|YP_535367.1| peptidylprolyl isomerase [Lactobacillus salivarius UCC118]
 gi|227890540|ref|ZP_04008345.1| peptidylprolyl isomerase [Lactobacillus salivarius ATCC 11741]
 gi|122449241|sp|Q1WUQ1|PRSA_LACS1 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|90820645|gb|ABD99284.1| Peptidyl-prolyl cis-trans isomerase [Lactobacillus salivarius
           UCC118]
 gi|227867478|gb|EEJ74899.1| peptidylprolyl isomerase [Lactobacillus salivarius ATCC 11741]
          Length = 296

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 76/198 (38%), Gaps = 30/198 (15%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             S+  + + +  YK  Y              ++   + I   L      +   +I+N +
Sbjct: 68  KVSDKKVNEQYNTYKKQYGSSFDSVLAQNDMTKSSFKQEIRSNLLLKEAVKDNTKITNKQ 127

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKSLSD 309
           L+A++++ + K       TV  ++   +  A++    LK+      F +LA++     S 
Sbjct: 128 LKAQWKEYEPK------VTVAHILVSKKSTAEDIINKLKEDGSYANFKKLAKKYSTDSST 181

Query: 310 ISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            + G       + +   D +   + F L +    T  +   +GY + +  +IK       
Sbjct: 182 KNDGGKLAAFDNTDTSLDSTFKKAAFGLKQGSFTTEPVKTEYGYHVIY--SIKNPGKGKM 239

Query: 365 QEVKKDIANQMRITKASE 382
            +   ++ +Q+  +K S+
Sbjct: 240 SDHTSELKSQIIDSKMSD 257


>gi|71066075|ref|YP_264802.1| peptidylprolyl isomerase [Psychrobacter arcticus 273-4]
 gi|71039060|gb|AAZ19368.1| possible peptidylprolyl isomerase [Psychrobacter arcticus 273-4]
          Length = 465

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/422 (12%), Positives = 115/422 (27%), Gaps = 78/422 (18%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
            S    +  V    +  S  I +  Q                 A S  L  ++L+ L+  
Sbjct: 56  NSTDGIIALVNENAILKSDLIAAIAQTQARA-----KAAGEPIANSAQLQSEVLNALILR 110

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL--AREGINEKEYIDH 154
                 I+ +GL  D   +   + +       +   S      RL  A+ G +       
Sbjct: 111 ELQLSLIKRVGLNPDEAAINKRLEQIA---KAEGLNSIAALQQRLDSAQAG-SYATLRAQ 166

Query: 155 YTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSV---------------DYIVLN 198
             +  +   +        +R S   +D         R                 DY  L+
Sbjct: 167 LIEDAAIQALQQRQITNRVRISEQDIDAFLASPEAKRLNQSEYQTVHVRVPYMDDYSRLS 226

Query: 199 NRHVPAIADPSNA----------VLTQWFEKYKDNYRAPEYK-RISYILFDVHEKEKKIE 247
                     +             + +     + +Y  P     + +        E   E
Sbjct: 227 EAQRNDALKVAQKLRTRLLVPNIDVAEAIAASQGSYPIPLQGGDMGFHKAAALPTELSSE 286

Query: 248 ISNDE----------------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKE 282
           I+  E                ++   +K+ +    P       ++            +++
Sbjct: 287 ITKLEVGAVSAPLITPEGIDIIKLANKKSSDTMLVP-QWNTRHILVKVDELQTDALAEQK 345

Query: 283 ADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
            ++ +  L+ G  F  LA     + G +     L    ++ +      +++      GD+
Sbjct: 346 INDLYSQLRNGAAFDGLASTYSDDPGSAGRGGDLDWVGEDQMIGP--FEAMMKNTAVGDY 403

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR--LEEFLA 396
           +      FG+ I  +   +       Q+V  +    M      +++    K   L+E  A
Sbjct: 404 SAPFKTQFGWHILKIEGKRQ------QDVSDEYRRTMARQALYQRLAPQAKEDWLQELRA 457

Query: 397 LG 398
             
Sbjct: 458 GA 459


>gi|330958458|gb|EGH58718.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 93

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  ++ + +E    ++ G  F ++A+      S      LGSF    +    
Sbjct: 2   AKATARHILVSSEDKCNELKTQIEGGADFAEIAKANSSCPSSRQGGDLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A        +   FGY +  V++ +
Sbjct: 61  FDTVVFS-APVNVVQGPVKTQFGYHLLEVTSRQ 92


>gi|15892946|ref|NP_360660.1| hypothetical protein RC1023 [Rickettsia conorii str. Malish 7]
 gi|34581354|ref|ZP_00142834.1| hypothetical protein [Rickettsia sibirica 246]
 gi|81527992|sp|Q92GU9|Y1023_RICCN RecName: Full=Uncharacterized protein RC1023; Flags: Precursor
 gi|15620140|gb|AAL03561.1| unknown [Rickettsia conorii str. Malish 7]
 gi|28262739|gb|EAA26243.1| unknown [Rickettsia sibirica 246]
          Length = 295

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 16/190 (8%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           L+++   F  + ++ A       + V SV  + +  + F    K  +      +  V + 
Sbjct: 4   LLLIITVFFTFNVAQASL----PNIVASVNDEPITLNEFRARKKMIMA-----LNNVESL 54

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
             A+   L    L +L+  + L Q+  D   E     +   I          NK  H   
Sbjct: 55  TPAQDKQLSDLALKSLIDESLLFQYAGDR--EIPQEEIENAIKSIE----DRNKMPHGSL 108

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIV 196
           +  L    +N   +I      L + +++      ++ SN  +D A     +    +   V
Sbjct: 109 LQYLKSRSVNPDSFISQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQKDVEISMQV 168

Query: 197 LNNRHVPAIA 206
             ++     A
Sbjct: 169 FTSKDGGNKA 178


>gi|242001848|ref|XP_002435567.1| rotamase, putative [Ixodes scapularis]
 gi|215498903|gb|EEC08397.1| rotamase, putative [Ixodes scapularis]
          Length = 132

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + +K G KF + A    +  +     LG  ++  +      D+
Sbjct: 40  KVRHILCEKQSKVLEALEKIKGGMKFNEAAATYSEDKARQGGDLGWMTRGSMVGP-FQDA 98

Query: 329 IFSL-----AKKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L     A      P +   FGY I  V   K
Sbjct: 99  AFALPISTLANPVYTDPPVKTKFGYHIIMVEGKK 132


>gi|152984891|ref|YP_001348658.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa PA7]
 gi|150960049|gb|ABR82074.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa PA7]
          Length = 92

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++     EA++  Q L +G+ F  LA +     S      LG      +    + ++
Sbjct: 6   ARHILVKTAAEAEQLKQRLARGEDFATLARKHSTCPSGKRGGDLGEVRPGQMV-RPIDNA 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHV 353
           IF     G     +   FGY +  V
Sbjct: 65  IFR-KPVGVLQGPLKSQFGYHLLEV 88


>gi|167033786|ref|YP_001669017.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           GB-1]
 gi|166860274|gb|ABY98681.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           GB-1]
          Length = 93

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  ++++ +E    ++ G  F ++A+      S      LGSF    +    
Sbjct: 2   ARATARHILVSSEEKCNELKAQIEAGADFAEIAKANSTCPSSRQGGDLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A        +   FGY +  V++ +
Sbjct: 61  FDTVVFS-APVNTVQGPVKTQFGYHLLEVTSRQ 92


>gi|251794076|ref|YP_003008807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
 gi|247541702|gb|ACS98720.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
          Length = 368

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 85/277 (30%), Gaps = 35/277 (12%)

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
           KD   +   F   L    I +  Y         +  ++  FV     +    +   +   
Sbjct: 58  KDGTVTEAEFNKYLDIFNIMQPGYEQVIAIPQFKEQLLQQFVSYKILAKQATEATLKKAD 117

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
           +  +       +         +NA + +  +  K    +    R    L  V  +    +
Sbjct: 118 DETNDQMKSFEDTLK------TNADVKKTLDDKK---VSTADVRTYLNLMLVVVEHMNSK 168

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD----------------EAFQSLK 291
           +++DE++AEYEKN   Y      TV  ++      AD                EA   L 
Sbjct: 169 VTDDEMKAEYEKNIGNYNP---VTVRHILVATTDPADSTKTLRTKEEALARAKEAKAKLD 225

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGY 348
            G  +  LA+E          G   K+           ++  +    G     +   +GY
Sbjct: 226 AGGDWTALAKEYSDDTGSKDSGGEYKDAKASDWVEGFKNAALT-QPVGKIGDPVETEYGY 284

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            +  V        V++ ++  +   +++   A   + 
Sbjct: 285 HVILVEKR---DQVTYDKITDEQKQEVQSVVAYNHMN 318


>gi|220935707|ref|YP_002514606.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997017|gb|ACL73619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 93

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              L+  +++  +E    ++ G+ F  LA+E     S      LG F +  +        
Sbjct: 6   ARHLLVDSEELCNELKARIEAGEDFAALAKEYSSCPSGQQGGELGRFGRGQMV-PEFDRV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +FS A        +   FGY +  V++ +
Sbjct: 65  VFS-APVNTVQGPVKTQFGYHLLEVTSRQ 92


>gi|320102636|ref|YP_004178227.1| hypothetical protein Isop_1090 [Isosphaera pallida ATCC 43644]
 gi|319749918|gb|ADV61678.1| hypothetical protein Isop_1090 [Isosphaera pallida ATCC 43644]
          Length = 708

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 91/702 (12%), Positives = 215/702 (30%), Gaps = 110/702 (15%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD---ALFS--VSGSSTVVSVGRQKVPFSS 55
           ML+ +R+  +    KI  ++  V   ++ L D    LF   ++ +     +  +KV  + 
Sbjct: 1   MLDAVRRNQK----KILAIMAIVAMFLFTLGDALPYLFGPTMTQNREEAVLYGRKVMTAD 56

Query: 56  FI-----NSWKQEL--GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ------- 101
                   +   E    +I  K G  +N +        + + D ++     D+       
Sbjct: 57  LSKIAQTRALANEFIDLVIRAKYGVSLNPQPFGGTSTRELV-DAMILQKVADEAGIPSTP 115

Query: 102 -----FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
                ++  +G++    +    +         ++  S  +  +               Y 
Sbjct: 116 ELGEDYLRALGIDISDAKDNALLVNVKSSRYGNSVTSDQLLSAI-----------ASQYR 164

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             L+++  V   V  +   +   D+ +R     R      + +      A PS A L   
Sbjct: 165 LSLAQSLGVVAPVTPLDVYDGYRDRNERIAGVAREF---KVEDYLDQVTAQPSEADLQAL 221

Query: 217 FEKYKDN----------YRAPEYKRISYILFDVHEKEKKIE----ISNDELQAEYEKNKE 262
           F KYK+           ++ P   R +    D     + I       + EL+  ++  K 
Sbjct: 222 FNKYKNQLPDANPAEPGFKIPRKVRFAIASIDSQALAQTIRTRLVADDHELREMFQIRKP 281

Query: 263 KYFSPEIRTVEQLVFPNQ-KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
           +      R +   V   +  + D     L +G        +   +L+ ++L       + 
Sbjct: 282 QIQLDRARAIRNAVAAARWTDLDALPTDLFQG--------DPTATLTPLTLAMVQNTLVE 333

Query: 322 DVSLADSIFSLAK-----KGDFTPVIHGSFGYVIAHVSNIK------PSFTVSFQEV--- 367
           D++      +L +     +          +   +   +  +              E+   
Sbjct: 334 DLTTERVALTLDERFGVLQTRVVDPFINLYDQAVDRATRSRGRSAEGQEEDPPLDELLEF 393

Query: 368 --KKDIANQMR---------------ITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
             ++ +   +                I   +  ++   +++EE       +     R  +
Sbjct: 394 GLRQGVEQLLSGLGVTPPPIKDGSGVIAAFNAALQAVVQKIEEMQFQ---VSPAVSRATL 450

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR-VFGKDDPL-SKDHTVALPDGSYMWVQI 468
             +       +G         ++P   QL  +  F ++  L  K  TV      Y   +I
Sbjct: 451 AELGPIASSVSGTTYPDPRSGSVPDTSQLFAQMAFEQNTRLFEKLETVDAEGRVYNAWRI 510

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
            +  PAR     EV   V   W+  +  +   + A   + E   +  + R         +
Sbjct: 511 AD-EPARVPSFNEVREQVIAAWRFAEARKLAQAAAEAFLAEVRAKNGDLRAAAGE--NPV 567

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQ 585
           +T   + +         +   +Q      ++ +     + L    FK+    ++ V P  
Sbjct: 568 ITIAPVTKFVELPNLSPFS--AQTTYRANDIFEFVNAGDQLRDAYFKLERPGDAFVAPNA 625

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
             D+F     +   K   +  +     +   ++   L+++ L
Sbjct: 626 PIDRFYVVAYENRLKAPFNDFVGINNQRERESIQSELLRQTL 667


>gi|197334077|ref|YP_002155047.1| chaperone SurA [Vibrio fischeri MJ11]
 gi|197315567|gb|ACH65014.1| chaperone SurA [Vibrio fischeri MJ11]
          Length = 437

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 55/376 (14%), Positives = 121/376 (32%), Gaps = 81/376 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S    S K  + + +Q+ G  +  E      L +++L+ L+     
Sbjct: 28  DRVVAIVDEGVVLQSDIDTSLKT-VKINAQEKGQPLPDEAV----LREQVLEKLIVDTIQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E +G+  D  R+   +        K+N  +      + A +G+    + +   K +
Sbjct: 83  SQQAEKMGIRIDDTRLEAALNDI----AKENNMTLAQLQQKTAAQGLPYANFREQIRKEI 138

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           + ++                          +    I +  + V ++A             
Sbjct: 139 AASEARNA----------------------QVRRRINILPQEVESLAQLLAEETQA---- 172

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      +IS+I   V +   +   ++ E                           
Sbjct: 173 -------TVQYKISHIQLRVEDGATQ---TDKE-------------------------AL 197

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +K+A++  + LK+G  F  +A       K+L     G   KE +P    AD I    K  
Sbjct: 198 EKQAEDLTERLKQGADFATMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQITGQGKNS 256

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD----IANQMRITKASEKVKEDYKRLE 392
                     G+ I  + ++K   TV+  EV         + +   + ++++      ++
Sbjct: 257 -IIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKTSVIMSDEGAQRLLNTI--ID 313

Query: 393 EFLALGTSMDEISRRE 408
           +  +   +  ++++R 
Sbjct: 314 DIKSGKETFADMAQRY 329


>gi|225715790|gb|ACO13741.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Esox
           lucius]
          Length = 142

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      D+
Sbjct: 50  KVRHILCEKHSKCMEAMEKLKAGVRFSEVASQYSEDKARQGGDLGWMTRGSMTGP-FQDA 108

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L      K     P +   FGY I  V   K
Sbjct: 109 AFALPNSTMDKPIYTDPPVKTKFGYHIIMVEGKK 142


>gi|107103693|ref|ZP_01367611.1| hypothetical protein PaerPA_01004764 [Pseudomonas aeruginosa PACS2]
 gi|116052218|ref|YP_788938.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296387268|ref|ZP_06876767.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           PAb1]
 gi|313109626|ref|ZP_07795572.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           39016]
 gi|115587439|gb|ABJ13454.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310882074|gb|EFQ40668.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           39016]
          Length = 93

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  ++ + +E   +++ G  F ++A E     S     +LGSF    +    
Sbjct: 2   ARATARHILVSSEAKCNELKTAIEGGADFAEVAREHSTCPSGRDGGNLGSFGPGQMV-RE 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS          +   FGY +  V++ +
Sbjct: 61  FDQVVFSAPLN-VVQGPVKTQFGYHLLEVTSRQ 92


>gi|109131190|ref|XP_001092957.1| PREDICTED: hypothetical protein LOC699273 isoform 2 [Macaca
           mulatta]
          Length = 164

 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 72  KVRHILCEKHGKIMEAMEKLKSGMRFNEVASQYSEDKARQGGDLGWMTRGSMVGP-FQEA 130

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 131 AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 164


>gi|325981594|ref|YP_004293996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
 gi|325531113|gb|ADZ25834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
          Length = 93

 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 5/92 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              +   ++   +++ +     ++ G  F  LA+E     S      LG F +  +    
Sbjct: 2   ARASARHILVKTEEQCNNLKAEIESGADFGTLAQEHSLCPSGKQGGELGEFGRGQMV-QE 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
               +FS A  G+    +   FGY +  V+  
Sbjct: 61  FDTVVFS-APVGEVQGPVKTQFGYHLLEVTQR 91


>gi|90414390|ref|ZP_01222367.1| putative peptidyl-prolyl cis-trans isomerase C [Photobacterium
           profundum 3TCK]
 gi|90324503|gb|EAS41059.1| putative peptidyl-prolyl cis-trans isomerase C [Photobacterium
           profundum 3TCK]
          Length = 92

 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIF 330
            ++  +Q++A++  + LKKG KF  LA++        S   LG F K  +         F
Sbjct: 9   HILVKHQEKAEDIIEQLKKGAKFQTLAKKYSNCPSGKSGGDLGEFRKGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
                G+          FG+ I  V
Sbjct: 68  ----TGELLTPHLVKTKFGWHIVKV 88


>gi|54302531|ref|YP_132524.1| putative peptidyl-prolyl cis-trans isomerase C [Photobacterium
           profundum SS9]
 gi|46915953|emb|CAG22724.1| putative peptidyl-prolyl cis-trans isomerase C [Photobacterium
           profundum SS9]
          Length = 122

 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIF 330
            ++  +Q++A++  + LKKG KF  LA++        S   LG F K  +         F
Sbjct: 39  HILVKHQEKAEDIIEQLKKGAKFQTLAKKYSNCPSGKSGGDLGEFRKGQMV-PQFDKVCF 97

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
                G+          FG+ I  V
Sbjct: 98  ----TGELLTPHLVKTKFGWHIVKV 118


>gi|78485939|ref|YP_391864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
           crunogena XCL-2]
 gi|78364225|gb|ABB42190.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
           crunogena XCL-2]
          Length = 102

 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++   + E     Q +   + F QLA E     S      LG F    +       
Sbjct: 15  KARHILVKTEAECLALKQQINDFETFDQLAREHSLCPSGRVGGDLGIFGPGKMV-PEFDQ 73

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +F+ A  G+    +   FGY +  +++ K
Sbjct: 74  VVFNDA-IGEVHGPVPTQFGYHLIWITDRK 102


>gi|91779927|ref|YP_555135.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderia xenovorans LB400]
 gi|91692587|gb|ABE35785.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderia xenovorans LB400]
          Length = 313

 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 78/251 (31%), Gaps = 28/251 (11%)

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
               +     +    D V   V      +      +    E        L  +       
Sbjct: 65  PAGVVARVNNISITQDQVDQIVHTTNAPDT--PALRANIKEQLIAR--ELFRQAAEKDHY 120

Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
            +   +    ++ K+      Y R         ++ K   +++ +++A+Y+K        
Sbjct: 121 ATKPEVQAAIDQAKNAAIVQAYLR---------DQIKPAPVTDADVKAQYDKVIATLGDS 171

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS-----------FS 316
           E +    +   +   A      LKKG  F QLA++  +  +    G+             
Sbjct: 172 EYKP-SVIAVKDAATAQTILDQLKKGVDFAQLAKQYSQGPAAAQGGAQNWISFKTPIQAG 230

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM- 375
                   LA+++  L +    +  +     + I  V   +P+    F + K  +  Q+ 
Sbjct: 231 NTQNWPQPLAEALVKLPQGAVSSEPVQVGDAFWILRVDQKRPTQIPPFDQTKDVLRRQLE 290

Query: 376 --RITKASEKV 384
              + KA+ +V
Sbjct: 291 QAAMQKATAQV 301


>gi|225023463|ref|ZP_03712655.1| hypothetical protein EIKCOROL_00321 [Eikenella corrodens ATCC
           23834]
 gi|224943812|gb|EEG25021.1| hypothetical protein EIKCOROL_00321 [Eikenella corrodens ATCC
           23834]
          Length = 317

 Score = 67.7 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 80/261 (30%), Gaps = 32/261 (12%)

Query: 147 NEKEYIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
           +E+E        L    ++        ++  +  ++        +R              
Sbjct: 62  SEQELQRQTLMQLVNQSLLVQAGRRNNIQVPDAEVEAEIARIAASRRQSLAQFEAAQARF 121

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
             D             K   R      +        +   + ++S DE+ A   + + + 
Sbjct: 122 GID-------------KTALRRQVRDSMIAQRVQQGQTAGEAKVSEDEINAAIARARAQG 168

Query: 265 FS------PEIRTVEQLVFPNQKE-----ADEAFQSLKKGKKFIQLAEEQ---GKSLSDI 310
            +            + ++  +Q E     A    Q+ ++G  F  LA +    G + +  
Sbjct: 169 ITLPQATPKTQYHAQHILIASQGERAQRLAQRLAQNAQRGADFSALARQYSQDGSAANGG 228

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            LG  S+          ++  L K G  +  +H  FG+ +  +   +   T     ++  
Sbjct: 229 DLGWLSEGETV-PEFERAMRGL-KPGQVSAPVHTQFGWHVIRLVEARTPNTPD-ARIRAG 285

Query: 371 IANQMRITKASEKVKEDYKRL 391
           + + +   K    ++   ++L
Sbjct: 286 VHDAIAAQKTQAAMQSLLQQL 306



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 12/158 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            K  ++ L +    + ++ A    S  + V  V  + +       +       + +    
Sbjct: 3   MKTLVLALGMSLA-FQVASANTVRSVDNIVAVVENEVITQRELDQAVAHTRSQMPR---- 57

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                +     L ++ L  LV+ + L Q      ++     V  EIAR      +    S
Sbjct: 58  ---GTQVSEQELQRQTLMQLVNQSLLVQAGRRNNIQVPDAEVEAEIARIAASRRQ----S 110

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
              F +  AR GI++          +    V      G
Sbjct: 111 LAQFEAAQARFGIDKTALRRQVRDSMIAQRVQQGQTAG 148


>gi|332307005|ref|YP_004434856.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174334|gb|AEE23588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 91

 Score = 67.7 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +KEA +    L KG  F QLA++     S      LG FS   +   +  + +F
Sbjct: 7   HILVKTEKEAQQLKTQLDKGANFQQLAKKHSLCPSGKKGGDLGEFSPGTMVK-AFDNVVF 65

Query: 331 SLAKKGDFT--PVIHGSFGYVIAH 352
              KK   T    +   FG+ +  
Sbjct: 66  ---KKDILTVHGPVKTQFGFHLIK 86


>gi|148553334|ref|YP_001260916.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingomonas
           wittichii RW1]
 gi|148498524|gb|ABQ66778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingomonas
           wittichii RW1]
          Length = 446

 Score = 67.7 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 56/478 (11%), Positives = 127/478 (26%), Gaps = 103/478 (21%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V    +  +         L ++    G  +  E      L  ++L NL+      Q  
Sbjct: 58  AIVNGTIITQTDVEQR----LALVIAANGGNIPDEERER--LRLQVLRNLIDETLQIQEA 111

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
               +E     V                     +    A    + KE+ +   +  S   
Sbjct: 112 TAQKVEVSREEVQQT------------------YDRVAANFRKSPKEFAEFLHEKGSSQA 153

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
            +   + G                      +  + +R V      S+  +          
Sbjct: 154 SIKRQIEG-------------------EAAWRRVLSRKVEPFVAVSDEEVNA-------- 186

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
                            +   +  +    L A          +PE              A
Sbjct: 187 ---------IIARLKASKGANEYHVGEIFLSA----------TPETMN------EANANA 221

Query: 284 DEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           +     +++G  F   A    E   +     LG    E +PD     ++ +  + G  + 
Sbjct: 222 ERIIDQVRRGASFAAYARQFSEASTAAVGGDLGWVRAEQLPDQ--LSAVVNQLQPGQISQ 279

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-------MRITKASEKVKEDYKRLEE 393
            I    GY I  +S+ +       ++ +  +          +   +A+ KV+   K LE+
Sbjct: 280 PIAIPGGYSILLLSDKRQVLGADPRDAQLLLKQLTVNFPPGITQAQATPKVEAFAKALEQ 339

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
               G + +  +             +   + V   ++       QL   +       S  
Sbjct: 340 IKGCGNANEVAA-------------NIGAEVVNNDQMKIRDLPPQLQEVMLNLQIGQSTP 386

Query: 454 HTVALPDGSYMWVQ--IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
              ++ DG    +     +  P+     E++ + ++++    +    +       V+E
Sbjct: 387 PFGSMRDGIRALILCGRDDPAPSSGPSFEQIQSQIEQERVNRRAQRYLRDLRRDAVIE 444


>gi|242237656|ref|YP_002985837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech703]
 gi|242129713|gb|ACS84015.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech703]
          Length = 93

 Score = 67.7 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +++A +    L++G  F QLA++     S      LG F K  +   +   ++F
Sbjct: 9   HILVDTEQQAHDLLAQLEQGADFQQLAQKHSTCPSRRNGGDLGEFRKGDMV-PAFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L K       +   FGY +  V
Sbjct: 68  SCELLKP---FGPVKTQFGYHLIKV 89


>gi|188532348|ref|YP_001906145.1| Peptidyl-prolyl cis-trans isomerase C [Erwinia tasmaniensis Et1/99]
 gi|259906858|ref|YP_002647214.1| Peptidyl-prolyl cis-trans isomerase C [Erwinia pyrifoliae Ep1/96]
 gi|188027390|emb|CAO95237.1| Peptidyl-prolyl cis-trans isomerase C [Erwinia tasmaniensis Et1/99]
 gi|224962480|emb|CAX53935.1| Peptidyl-prolyl cis-trans isomerase C [Erwinia pyrifoliae Ep1/96]
 gi|283476650|emb|CAY72478.1| peptidyl-prolyl cis-trans isomerase C [Erwinia pyrifoliae DSM
           12163]
          Length = 93

 Score = 67.7 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + LK+G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQLKQGADFEKLAKKHSTCPSGKKGGHLGEFKQGAMV-PAFDKVVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L +       +H  FGY I  V
Sbjct: 68  SCPLIEPQ---GPLHTQFGYHIIKV 89


>gi|87306930|ref|ZP_01089076.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Blastopirellula
           marina DSM 3645]
 gi|87290303|gb|EAQ82191.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Blastopirellula
           marina DSM 3645]
          Length = 369

 Score = 67.7 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 89/296 (30%), Gaps = 78/296 (26%)

Query: 83  VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142
            GL   +L+ L+      Q+IE          V  EI+R                   L 
Sbjct: 92  FGLKSSVLNRLIDRELALQYIESTDFRPSSSEVNREISRV---------------KKELE 136

Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
             G +   Y+      +                              R + + +   R+ 
Sbjct: 137 ARGKSLDAYLTENHTDMRML--------------------------RRRIAWNIAWPRY- 169

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
            A A  ++  L ++FE ++ ++     +++S IL   +E E    +              
Sbjct: 170 -ADASLTDDNLRRYFELHRRDFDG-TQRKLSQILLTTNETEPSQVVER------------ 215

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKE 318
                  R +          A      +K+G+  F + A     + S      +G   + 
Sbjct: 216 ------QRDI----------AARLRVQIKRGEFAFEKAARSYSNAPSSEQGGLVGWIGRH 259

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
                 + ++ F  A  G+    I  SFG  +  V+  +      ++EVK ++   
Sbjct: 260 NQLPEEIHNAAFD-APLGEVAGPIQTSFGIHLICVTEEQLGEI-PWEEVKHEVREA 313


>gi|296105332|ref|YP_003615478.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059791|gb|ADF64529.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 93

 Score = 67.7 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + LK G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQLKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           S     + T  +H  FGY +  V   K
Sbjct: 68  SCPVL-EPTGPLHTQFGYHVIKVLYRK 93


>gi|148264051|ref|YP_001230757.1| hypothetical protein Gura_1994 [Geobacter uraniireducens Rf4]
 gi|146397551|gb|ABQ26184.1| hypothetical protein Gura_1994 [Geobacter uraniireducens Rf4]
          Length = 585

 Score = 67.7 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 89/202 (44%), Gaps = 15/202 (7%)

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
            ++    +++      + + +F       +I++S+DE +A Y K+   Y +PE+  ++ L
Sbjct: 391 HYKDRIKDFKD----SLLFGMFIQKVVAPEIKVSDDETKAYYNKHIGDYSTPELLRIKGL 446

Query: 276 VFPNQKEADEAFQSLKKGKKFIQL-------AEEQGKSLSDISLGSFSKEYIPDVSLADS 328
            F  ++ A+ A   L+KG ++  L       A ++   L + S    ++  +P+      
Sbjct: 447 AFTRKEYAEAAIDKLRKGTEYQWLQANAEGQAAKESAGLLEFSPTPVTRNGLPEK--MQE 504

Query: 329 IFSLAKKGDFTPVIHGSFG-YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
             +  K G++  +     G + +  + ++ P+     + V+K I  ++   K ++ V+E 
Sbjct: 505 ATAGGKAGEY-RLYESPEGFFYVLLIQDVVPAKPQPLENVQKVIVKKLFNAKLNQAVEEW 563

Query: 388 YKRLEEFLALGTSMDEISRREK 409
             +L +   +   + ++    K
Sbjct: 564 GVKLRDAYKVQVYITDLGAVNK 585



 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 55/439 (12%), Positives = 135/439 (30%), Gaps = 70/439 (15%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
             + K ++    E++  Y++  +++       ++ + F  + +A E  ++++ G  F +L
Sbjct: 147 DLQIKSLQPDATEVEKYYKEAVKEW------KIKSVKFEKEDDAKELARTVQAGGNFDEL 200

Query: 300 AEE--QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                     +    G + K       +A+ +  + + G  +PVI     Y I  + +++
Sbjct: 201 VNTLIDSGKATGTKEGEYVKARDLLPQVANVVAGM-RAGSVSPVIQVGPSYAIFKLEDVR 259

Query: 358 -PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA--LGTSMDEIS-RREKIVSI 413
            P+      E +     Q    K  E +    K L +  A      +D++     K    
Sbjct: 260 YPAGN---AEAQDAAREQALAMKQIEALAAYNKSLTKKYAKINQKLLDKLDFEAAKPGFA 316

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF--GKDDPLSKDHTVA-------------- 457
            L        ++KG +   +    + L + F  G D+ +                     
Sbjct: 317 QLLKDRRVVVEIKGDKPITVADMAESLSQKFFHGIDEAIKGKRINEQKMSALYDIFYARL 376

Query: 458 -LPDGSYMWVQIKESIPARDRKLEE-----------VLTDVKK----------------- 488
            L +   + +        R +  ++           V  ++K                  
Sbjct: 377 YLKEAKKLGIDKTGHYKDRIKDFKDSLLFGMFIQKVVAPEIKVSDDETKAYYNKHIGDYS 436

Query: 489 --DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI-GKNLGASLLTTNQI---NRMDNENK 542
             +   +K       +  +  ++  ++G  ++ +     G +   +  +   +       
Sbjct: 437 TPELLRIKGLAFTRKEYAEAAIDKLRKGTEYQWLQANAEGQAAKESAGLLEFSPTPVTRN 496

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVF--KVTNSKVGPVQEKDK-FISYLTQMMN 599
                       G     + +    G  YV+    V  +K  P++   K  +  L     
Sbjct: 497 GLPEKMQEATAGGKAGEYRLYESPEGFFYVLLIQDVVPAKPQPLENVQKVIVKKLFNAKL 556

Query: 600 KDLLDSVIAYLKSQYSVTV 618
              ++     L+  Y V V
Sbjct: 557 NQAVEEWGVKLRDAYKVQV 575



 Score = 37.7 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V +VG ++V       S    L  + ++ G    + R + V     +L+ L++   + Q 
Sbjct: 66  VATVGDEQVTLDELNKS----LAALHERAGEDKTAGRKKYVT----VLNRLINSRLIVQE 117

Query: 103 IEDIGLE 109
            E +GLE
Sbjct: 118 AESMGLE 124


>gi|309775740|ref|ZP_07670736.1| putative foldase protein PrsA [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916503|gb|EFP62247.1| putative foldase protein PrsA [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 332

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 91/280 (32%), Gaps = 38/280 (13%)

Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
            I   E   +  K   ++ +   F   +   ++      +   E    +          +
Sbjct: 53  NITADELYKNLNKTYGKSMLFMKFQAEVIDKSVKTSDELKKTAETYESNIKQSAQSQASS 112

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
               ++A++ Q   +Y   + + +       +  + + +              +K+ ++ 
Sbjct: 113 SGADADALIAQNIAQY--GFTSDQLYEYCMTVAKMEKLQN----------DYIDKHLDEL 160

Query: 265 FSP-----EIRTVEQLVFPNQKEA----------DEAFQSLKKGKKFIQLAEEQGKSLSD 309
           F+P     + RTV  ++   +              +   +LKKG  F  +A++     S 
Sbjct: 161 FTPIYKEKKSRTVSHILIKMEDAKNPTKKELEKVQKVEDALKKGDSFADVAKKYSDDSSA 220

Query: 310 IS---LGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGS---FGYVIAHVSNIKPSFTV 362
                LG    +     S  ++ F L K G+ +  V   +    G+ +  V     +   
Sbjct: 221 SDGGYLGYMDSDTSYVDSFKNAAFKL-KAGETSDWVKESNDNYNGWHLIRVEETDKAKLE 279

Query: 363 SFQEVKKDIANQMR---ITKASEKVKEDYKRLEEFLALGT 399
             ++ K+ +   +       ++  + E  K+L+   A   
Sbjct: 280 KDKKAKESLYKAIANGTQNLSNTYLWEAAKKLDIKYANDD 319


>gi|323343304|ref|ZP_08083531.1| hypothetical protein HMPREF0663_10066 [Prevotella oralis ATCC
           33269]
 gi|323095123|gb|EFZ37697.1| hypothetical protein HMPREF0663_10066 [Prevotella oralis ATCC
           33269]
          Length = 475

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 66/190 (34%), Gaps = 32/190 (16%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE--------QLVFPNQKEADEAFQS-- 289
            ++ +   I+N +++A   +    Y   + R            ++    ++A +A Q   
Sbjct: 93  DQQIRPAMITNADVEA---EAWRIYSQAQHRVDSMGGLVKPAHILIGIPQKASQAEQDAA 149

Query: 290 ----------LKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKK 335
                     LKK   F +LA++    ++    G       K         + IFS+ KK
Sbjct: 150 KQRVDSIYNILKKDGDFAELAKKYSSDVASARNGGELPWIEKGQTLK-EFDEKIFSM-KK 207

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM-RITKASEKVKEDYKRLEEF 394
           G+ +       GY I  + +        +  ++ DI   + +     E +      L + 
Sbjct: 208 GELSKPFLTPAGYHIVILKD--KGKFFPYDSLRADILKFIDQRGLRDEIINHRLDSLAKA 265

Query: 395 LALGTSMDEI 404
              G S D++
Sbjct: 266 AGNGKSPDDV 275


>gi|260221806|emb|CBA30735.1| hypothetical protein Csp_C25050 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 728

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 53/153 (34%), Gaps = 10/153 (6%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
            G   V  V  + + F       ++    ++Q+       E      L + +L+ +++  
Sbjct: 7   PGDYIVAVVNSEPITFQELSIEVRRVSQQLTQQGQAAPAPEE-----LRRLVLERMINDK 61

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
              Q   + G+  D   +              N         +LA++G+  + + D    
Sbjct: 62  AQLQLAREQGIRMDATAIDRAEQNVAS----QNGVDVLALRQKLAKDGVTVQSFRDGLRD 117

Query: 158 MLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN 189
            L+ + +        ++ S++ +D+A +    N
Sbjct: 118 QLTLSRLHEREVESSIKVSDVDVDRAIQEQQAN 150



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 93/293 (31%), Gaps = 38/293 (12%)

Query: 139 SRLAREGINEKEYIDHYTKMLSRT-----DVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            +L ++G       +    +L R       +      G+R     +D+A++       VD
Sbjct: 34  QQLTQQGQAAPAPEELRRLVLERMINDKAQLQLAREQGIRMDATAIDRAEQNVASQNGVD 93

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
            + L  +                      ++R     +++       E E  I++S+ ++
Sbjct: 94  VLALRQKLAKDGVTV-------------QSFRDGLRDQLTLSRLHEREVESSIKVSDVDV 140

Query: 254 QAEYEKNKEKYFSP--EIRTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQL 299
               ++ +     P  +   + Q++    ++A                Q  + G+ F  L
Sbjct: 141 DRAIQEQQANNTDPFAQELNIAQILIVVPEKANGEEAAALYVKAQRVLQRARDGEDFTNL 200

Query: 300 AEEQGK-SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
            +E      ++       +      S  ++   L K G+   V+    G+ I  +   K 
Sbjct: 201 VKEFSAADRNNGGQIGLRRGDRLPPSFVNATQGL-KVGEIADVVRTGAGFHILKLVERKA 259

Query: 359 SFTVSFQEVKKDIANQMRITK----ASEKVKEDYKRLEEFLALGTSMDEISRR 407
              +    V+    + +         ++ +       ++ ++  T    ++R+
Sbjct: 260 PTRLVQTMVQTRARHILLRNSPQLPQAQAIARLADARQQIVSGKTDFASMARK 312


>gi|74007777|ref|XP_849819.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase
           NIMA-interacting 4 (Rotamase Pin4) (PPIase Pin4) [Canis
           familiaris]
          Length = 224

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 132 KVRHILCEKHGKIMEAMEKLKSGMRFNEVATQYSEDKARQGGDLGWMTRGSMVGP-FQEA 190

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P I   FGY I  V   K
Sbjct: 191 AFALPVSGPDEPVFTDPPIRTEFGYHIIMVEGRK 224


>gi|301631437|ref|XP_002944804.1| PREDICTED: chaperone surA-like [Xenopus (Silurana) tropicalis]
          Length = 255

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 59/163 (36%), Gaps = 17/163 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLK----KG 293
           E S D  +  +  +       E   +  +++           ++ A+     L+     G
Sbjct: 80  EPSEDACRRYHAAHPTLGGRGERARLRHVLYAVTPGVDVRQLRQHAEALLLELRCADDGG 139

Query: 294 KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            +F Q A +     S      LG    E       A ++F   + G  + ++H  FG  +
Sbjct: 140 TRFAQAARQWSNCPSGQEGGELGWLRAEDCA-PEFARAVFGTQEVGVLSRLVHSRFGLHV 198

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             V   +P   + F++++  +A  +R       +++  + L +
Sbjct: 199 VEVCERQPGEALPFEQIRASVALLLRQQAWVNALRQYLQLLVD 241


>gi|296136914|ref|YP_003644156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
 gi|295797036|gb|ADG31826.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
          Length = 226

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 53/156 (33%), Gaps = 14/156 (8%)

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQ----------KEADEAFQSLKKGKKFIQLA 300
            E +  Y ++ +     ++   + ++F             K  D  +  +     F ++A
Sbjct: 53  AECERYYAQHADALRQGDMVEADHILFAVTPSTPIDALRHKAEDTLYALMADSSGFAEMA 112

Query: 301 EEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                   +    +LG  + +         ++   A+ G    ++   FG  I  ++ I 
Sbjct: 113 RGLSNCPSAQIGGNLGQLTADQCV-PEFWQALMEHAEPGVLPRLVRTRFGLHIVRIARIA 171

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                 F+ V+  IA  +R       ++   + LE+
Sbjct: 172 RGQLPPFEAVQAQIAQTLRQQSLVRALQLYAEDLEQ 207


>gi|90407687|ref|ZP_01215866.1| peptidyl-prolyl cis-trans isomerase C [Psychromonas sp. CNPT3]
 gi|90311156|gb|EAS39262.1| peptidyl-prolyl cis-trans isomerase C [Psychromonas sp. CNPT3]
          Length = 93

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  + +  ++  + ++ G  F  +A++     S      LG F    +       
Sbjct: 5   RARHILVTSSELCEDLKKQIEAGSDFTSIAQKHSTCPSGATGGDLGQFGPGQMV-PEFDK 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +FS A  G+    +   FGY +  V+  
Sbjct: 64  VVFS-APIGEVQGPVKTQFGYHLLEVTER 91


>gi|15601706|ref|NP_233337.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121586688|ref|ZP_01676472.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae 2740-80]
 gi|121726404|ref|ZP_01679678.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae V52]
 gi|147672166|ref|YP_001215127.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae O395]
 gi|153212171|ref|ZP_01947966.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae 1587]
 gi|153801415|ref|ZP_01956001.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MZO-3]
 gi|153818331|ref|ZP_01970998.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae NCTC 8457]
 gi|153821043|ref|ZP_01973710.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae B33]
 gi|153824744|ref|ZP_01977411.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MZO-2]
 gi|153827820|ref|ZP_01980487.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae 623-39]
 gi|227812519|ref|YP_002812529.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae M66-2]
 gi|229505907|ref|ZP_04395416.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae BX
           330286]
 gi|229510239|ref|ZP_04399719.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae B33]
 gi|229514365|ref|ZP_04403826.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae TMA 21]
 gi|229517631|ref|ZP_04407076.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae RC9]
 gi|229522478|ref|ZP_04411894.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae TM
           11079-80]
 gi|229526497|ref|ZP_04415901.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae bv.
           albensis VL426]
 gi|229528148|ref|ZP_04417539.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae 12129(1)]
 gi|229605439|ref|YP_002876143.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae MJ-1236]
 gi|254224743|ref|ZP_04918359.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae V51]
 gi|254284579|ref|ZP_04959546.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae AM-19226]
 gi|254850119|ref|ZP_05239469.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MO10]
 gi|255746306|ref|ZP_05420253.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholera CIRS 101]
 gi|262158187|ref|ZP_06029305.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae INDRE
           91/1]
 gi|262169214|ref|ZP_06036907.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae RC27]
 gi|262191931|ref|ZP_06050098.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae CT
           5369-93]
 gi|262403035|ref|ZP_06079595.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio sp. RC586]
 gi|297579998|ref|ZP_06941925.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae RC385]
 gi|298499727|ref|ZP_07009533.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MAK 757]
 gi|9658391|gb|AAF96849.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121549116|gb|EAX59151.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae 2740-80]
 gi|121631152|gb|EAX63527.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae V52]
 gi|124116723|gb|EAY35543.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae 1587]
 gi|124123081|gb|EAY41824.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MZO-3]
 gi|125622806|gb|EAZ51124.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae V51]
 gi|126511144|gb|EAZ73738.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae NCTC 8457]
 gi|126521417|gb|EAZ78640.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae B33]
 gi|146314549|gb|ABQ19089.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae O395]
 gi|148876665|gb|EDL74800.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae 623-39]
 gi|149741700|gb|EDM55729.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MZO-2]
 gi|150425364|gb|EDN17140.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae AM-19226]
 gi|227011661|gb|ACP07872.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae M66-2]
 gi|227015600|gb|ACP11809.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae O395]
 gi|229334510|gb|EEN99995.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae 12129(1)]
 gi|229336655|gb|EEO01673.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae bv.
           albensis VL426]
 gi|229340463|gb|EEO05469.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae TM
           11079-80]
 gi|229345667|gb|EEO10640.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae RC9]
 gi|229348345|gb|EEO13303.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae TMA 21]
 gi|229352684|gb|EEO17624.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae B33]
 gi|229356258|gb|EEO21176.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae BX
           330286]
 gi|229371925|gb|ACQ62347.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae MJ-1236]
 gi|254845824|gb|EET24238.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MO10]
 gi|255736060|gb|EET91458.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholera CIRS 101]
 gi|262022495|gb|EEY41203.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae RC27]
 gi|262030065|gb|EEY48711.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae INDRE
           91/1]
 gi|262032165|gb|EEY50736.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae CT
           5369-93]
 gi|262350534|gb|EEY99667.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio sp. RC586]
 gi|297535644|gb|EFH74478.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae RC385]
 gi|297541708|gb|EFH77759.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MAK 757]
 gi|327485928|gb|AEA80334.1| Peptidyl-prolyl cis-trans isomerase ppiC [Vibrio cholerae
           LMA3894-4]
          Length = 92

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++AD+    LKKG KF  LA++     S      LG F +  +   +   + F
Sbjct: 9   HILVKHKEQADDILAQLKKGAKFHVLAKKYSTCPSGKKGGDLGEFRQGQMV-PAFDKACF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
               +G+          FG+ +  V
Sbjct: 68  ----QGEVLTPQLVKTKFGWHVVKV 88


>gi|325277737|ref|ZP_08143302.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas sp.
           TJI-51]
 gi|324097130|gb|EGB95411.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas sp.
           TJI-51]
          Length = 93

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  ++ + +E    ++ G  F ++A+      S      LGSF    +    
Sbjct: 2   ARATARHILVASEDKCNELKAQIEAGADFAEIAKANSTCPSSRQGGDLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A        +   FGY +  V++ +
Sbjct: 61  FDTVVFS-APVNTVQGPVKTQFGYHLLEVTSRQ 92


>gi|119713671|gb|ABL97722.1| hypothetical protein MBMO_EB0-39H12.0098 [uncultured marine
           bacterium EB0_39H12]
          Length = 269

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 76/172 (44%), Gaps = 9/172 (5%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----AD 284
            +R++  +  + ++      S +++   Y KN +KYF  +  T   + F         A+
Sbjct: 87  KRRLAQKIGFLRQEADSSLPSEEQVSDFYSKNIDKYFVAKRLTFSHVYFSTNDNGKTLAE 146

Query: 285 EAFQSLKKGKKFIQLAEEQ--GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
           EA   +K G       E    GK+ S  S+    + +      +++I ++  K +++  +
Sbjct: 147 EALILIKSGASESDFGEPFLLGKNFSSKSISEIERSF--GKQFSENIQNIIPK-EWSGPL 203

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
              +G  + +V++I  SFT S +E+K  + N + + K +  V E  K L   
Sbjct: 204 DSEYGSHLIYVNSISDSFTPSLEEIKDIVINDVILEKQNNSVNEYLKELRNK 255


>gi|313901127|ref|ZP_07834615.1| PPIC-type PPIASE domain protein [Clostridium sp. HGF2]
 gi|312954085|gb|EFR35765.1| PPIC-type PPIASE domain protein [Clostridium sp. HGF2]
          Length = 332

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 84/279 (30%), Gaps = 36/279 (12%)

Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
            I   E   + +K   ++ +   F   +  S++      +   E    +      +   +
Sbjct: 53  NITADELYKNLSKTYGKSMLFMKFQAEVINSSIKTTDELKKTAEEYESNI----KQSAES 108

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
            A  S         +    Y     +   Y +                      K+ ++ 
Sbjct: 109 QAASSGTDAEALISQNIAQYGFTSDQLYDYCMTVAKM--------EKMQNDYISKHLDEL 160

Query: 265 FSP-----EIRTVEQLVFPNQ----------KEADEAFQSLKKGKKFIQLAEEQ---GKS 306
           F+P     + RTV  ++   +          ++  +   +LKKG  F  +A++    G +
Sbjct: 161 FTPIYKEKKSRTVSHILIKMEDANKPTKKELEKVQKVEDALKKGDSFADVAKKYSDDGSA 220

Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS---FGYVIAHVSNIKPSFTVS 363
                LG    +     S  ++ F L  K     V   +    G+ +  V     +    
Sbjct: 221 SDGGYLGYMDSDTSYVDSFKNAAFKLKAKETSDWVKESNDSYNGWHLIKVEETDKAKLEK 280

Query: 364 FQEVKKDIANQMR---ITKASEKVKEDYKRLEEFLALGT 399
            ++ K  +   +       ++  + E  K+L+   A   
Sbjct: 281 DKKAKDSLYKAIANGTENLSNTYLWEAAKKLDIKYANDD 319


>gi|206603475|gb|EDZ39955.1| Probable peptidil-prolyl cis-trans isomerase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 289

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 6/143 (4%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           ++ ++   Y K+++    P    V Q+VFP++K A   F  LKK   F    ++  K   
Sbjct: 120 TDSDIMNYYNKHQKDIKQPGYVDVRQVVFPDEKTAKRDFSLLKKNGGF----KKLTKMFK 175

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
              +G   +  +P        F + + G  T  I    G     +        ++  + +
Sbjct: 176 GGPVGKIYEGTVP-PKFVSFFFGVPE-GSITGPIPLKDGIHYFKIDRSVKGVQLTLDQAR 233

Query: 369 KDIANQMRITKASEKVKEDYKRL 391
             I N +R  +     +     L
Sbjct: 234 DGIRNYLRNRQNKTIYQTLVNHL 256



 Score = 40.4 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 12/74 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S +  VG   +  +                +G   +    +   +  ++L+ +V  + L
Sbjct: 30  DSVLAKVGDTTISQADLKKKLD--------SMGLASS----KDPNVTSELLNQMVDNSLL 77

Query: 100 DQFIEDIGLEADHG 113
                  GL+    
Sbjct: 78  AMEARKEGLDKTPE 91



 Score = 38.4 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 541 NKFFGYDGISQVFSGPVE-MVKCFPIENGLSYVVF--KVTNSKVGPVQEKDKFISYLTQM 597
                   +S  F  P   +    P+++G+ Y      V   ++   Q +D   +YL   
Sbjct: 184 EGTVPPKFVSFFFGVPEGSITGPIPLKDGIHYFKIDRSVKGVQLTLDQARDGIRNYLRNR 243

Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLI 623
            NK +  +++ +L+S  +V +++  +
Sbjct: 244 QNKTIYQTLVNHLRSTTTVQINNKAL 269


>gi|297180116|gb|ADI16339.1| parvulin-like peptidyl-prolyl isomerase [uncultured bacterium
           HF130_01F24]
          Length = 436

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 54/429 (12%), Positives = 127/429 (29%), Gaps = 82/429 (19%)

Query: 20  VLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
           +    F    GLS +   V     +  V    +  S        +L   + + G  +  E
Sbjct: 16  IAITVFATFVGLSASAQRVLLDRVIALVDEGVILQSELDIRI-NDLQQAAARDGRPLPPE 74

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
                 +   +L+ L+      Q  E + +  D   +   ++       +++  S D +V
Sbjct: 75  ----SEIRDDVLEALIVENIQLQMAEQVSIRYDDDTINRVLSNM----AENSNMSFDEYV 126

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY-IVL 197
           + L   G+  +       +M+ +    GM    +  +   +D           +     +
Sbjct: 127 TALENGGVYLQTREQVRQQMMIQELQRGMVNRRITITEQEIDNFLNSEMGREVMAPDFFI 186

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE- 256
           ++  V A    S+    Q     K  + A    ++      +  + +  E SN ++Q+  
Sbjct: 187 DHMVVVASGTDSDEEKQQ-----KLRFAADLTAQVEEGSNFLQVRAEASESSNFQIQSTD 241

Query: 257 ----------------------------------YE------KNKEKYFSPEIRTVEQLV 276
                                             Y       K        +   +  ++
Sbjct: 242 FGWRKAEQLPILFSSIVVEMKEGEIAGPIEAGNGYHVIFLAGKRGGTEQIVKQTNIRHIM 301

Query: 277 FPNQK---------EADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDV 323
               +         E  E  Q +  G+ F  +A +         +   L   ++  +P  
Sbjct: 302 LSPNEIRNEEQTITEIQELRQRILSGEDFAVIARQHSDDATSVVAGGDLDWVNEGGMP-P 360

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
               ++  + ++   +     + G+ IA V   + S          D++ Q   ++A+  
Sbjct: 361 EFE-AVIQVLEENTLSEPFESATGWHIAEVLGRRES----------DLSQQYTRSQAANS 409

Query: 384 VKEDYKRLE 392
           ++     LE
Sbjct: 410 LRNRKFDLE 418


>gi|67484012|ref|XP_657226.1| peptidyl-prolyl cis-trans isomerase [Entamoeba histolytica
           HM-1:IMSS]
 gi|56474474|gb|EAL51841.1| peptidyl-prolyl cis-trans isomerase, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 120

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLA 326
              V  ++   Q +  EA   L++GK F Q+A E  +  +    SLG   +  +   +  
Sbjct: 32  KIKVRHILCEKQSKILEALAKLEEGKPFSQVATEYSEDKANQGGSLGWVIRGQMCG-AFQ 90

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           D  F+ A  G +T      FGY I  V   K
Sbjct: 91  DVAFN-APVGKYTQPFKTPFGYHIVLVEERK 120


>gi|167383933|ref|XP_001736743.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting [Entamoeba
           dispar SAW760]
 gi|165900781|gb|EDR27021.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative
           [Entamoeba dispar SAW760]
          Length = 120

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLA 326
              V  ++   Q +  EA   L++GK F Q+A E  +  +    SLG   +  +   +  
Sbjct: 32  KIKVRHILCEKQSKILEALAKLEEGKPFSQVATEYSEDKANQGGSLGWVIRGQMCG-AFQ 90

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           D  F+ A  G +T      FGY I  V   K
Sbjct: 91  DVAFN-APVGKYTQPFKTPFGYHIVLVEERK 120


>gi|148653021|ref|YP_001280114.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
 gi|148572105|gb|ABQ94164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
          Length = 92

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 270 RTVE--QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
           RT     ++  +++ A+E    L KG  F  LA++     S      LG F K  +   +
Sbjct: 3   RTASALHILVKDKELAEEIIAKLNKGAHFDVLAKKHSTCPSGKKGGDLGEFRKGQMV-PA 61

Query: 325 LADSIFSLAKKGDFTPVI--HGSFGYVIAHV 353
                F     G+          FG+ +  V
Sbjct: 62  FDKVCF----NGELLTPHLVKTKFGWHVVKV 88


>gi|89095401|ref|ZP_01168315.1| peptidyl-prolyl cis-trans isomerase C [Oceanospirillum sp. MED92]
 gi|89080339|gb|EAR59597.1| peptidyl-prolyl cis-trans isomerase C [Oceanospirillum sp. MED92]
          Length = 93

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
              T   L+   +++ ++    ++ G  F + A++      S     LGSF +  +    
Sbjct: 2   ARATARHLLVDTEEQCNQIKAEIEAGLDFAEAAKQHSSCPSSAQGGDLGSFGRGQMV-PE 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
              ++F+  + G     I   FG+ +  V++ +
Sbjct: 61  FDKAVFT-GEVGVVQGPIQTQFGFHLLEVTSRE 92


>gi|297584461|ref|YP_003700241.1| hypothetical protein Bsel_2171 [Bacillus selenitireducens MLS10]
 gi|297142918|gb|ADH99675.1| hypothetical protein Bsel_2171 [Bacillus selenitireducens MLS10]
          Length = 250

 Score = 67.3 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 8/151 (5%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQK-IGFVVNSERARSVGLDKKILDNLVSGAT 98
              V +V  + +P ++     +Q   M +Q+ I F      A  + + + I+D L+    
Sbjct: 67  GDVVATVNGEDIPMANLEMQLQQYEMMFAQQGIDFEDEENMALLMQIQEGIVDELIQLEL 126

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L Q  +   ++AD   V  E+ +        ++F  D F   LA +G  E    +     
Sbjct: 127 LVQEADSQNIQADEDEVQAEMEQI------RSQFDDD-FEEVLASQGYTEDLLENEIRDS 179

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           L    ++           +  ++ +  Y + 
Sbjct: 180 LKLNQLLSPEYIETLDFEVTDEELEEAYEQQ 210


>gi|330808744|ref|YP_004353206.1| peptidylprolyl isomerase (peptidyl-prolyl cis-trans isomerase)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376852|gb|AEA68202.1| peptidylprolyl isomerase (peptidyl-prolyl cis-trans isomerase)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 93

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++   + + +E    ++ G  F ++A+      S      LGSF    +    
Sbjct: 2   AKATARHILVSTEDKCNELKAQIEAGADFAEVAKANSSCPSSRQGGDLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS          +   FGY +  V++ +
Sbjct: 61  FDTVVFSAPIN-VVQGPVKTQFGYHLLEVTSRQ 92


>gi|312129915|ref|YP_003997255.1| ppic-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
           byssophila DSM 17132]
 gi|311906461|gb|ADQ16902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
           byssophila DSM 17132]
          Length = 768

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 56/379 (14%), Positives = 120/379 (31%), Gaps = 75/379 (19%)

Query: 84  GLDKKILDNLVSGATLDQFIEDIGLEADH---GRVWG----EIARSPLFHGKDNKFSHDV 136
           G  ++IL  L+            G++       ++       +A +   H +  K  ++ 
Sbjct: 67  GSHEEILQELLQRKLFIAEARSQGMDTTENFREQIQSHLSLAVASALEDHSEIRKLENEA 126

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           +   L               K ++ + +         P++ L     + Y E   +  + 
Sbjct: 127 YERYL---------------KEVNASHLFVPISPYAAPADTL-----KLYNELLQIRNMA 166

Query: 197 LNNRHVPAIAD---------PSNAVL-------------TQWFEKYKDNYRAPEYKRISY 234
           + N+     A           S   L             +  ++  KD+   P      Y
Sbjct: 167 IQNKDFETQAKRWSKDPKTASSGGQLGWFSVFYLVYPLESAVYKVPKDSISLPVRTPAGY 226

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
            L  V++  K    S+  +Q    ++  K+  PE    E L    +K+ D     +  G 
Sbjct: 227 HLIKVNDIRK----SSGMVQI---QHIFKHIGPESEDKETL----RKQLDSLRTEILNGL 275

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F    E+     +        + +     +    +++F+L KKG+ +  I  S G  + 
Sbjct: 276 PFETAVEQHSDDFNSKPNKGILQPFGVGKTEPGFEEAVFAL-KKGEISMPIQSSTGLHLV 334

Query: 352 HVSNIKPSFTVS--FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT---SMDEISR 406
            V +     T S   ++ +  I    R            K++ +F A      S + +  
Sbjct: 335 KVIDRLKPLTRSQFIEQNRAKITTDSRGEYLR------LKQINDFRAKNNVSFSDEALDN 388

Query: 407 REKIVSIDLPLVDFAGKDV 425
             K  S+ +   ++   + 
Sbjct: 389 ALKFASVRILTRNWQKPNT 407


>gi|270339925|ref|ZP_06006472.2| peptidyl-prolyl cis-trans isomerase [Prevotella bergensis DSM
           17361]
 gi|270333285|gb|EFA44071.1| peptidyl-prolyl cis-trans isomerase [Prevotella bergensis DSM
           17361]
          Length = 483

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 95/285 (33%), Gaps = 42/285 (14%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAK--RFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
           +M+    +      G  P   + +Q    + +    ++D I ++   V +        + 
Sbjct: 76  EMMRMQGMAEGISWGSNPDCAIPEQLAVQKLFLHQAAIDSIEVSESEVASGV---EQQIR 132

Query: 215 QWFEKYKDNYRAPEYKRISYILFDV----------------HEKEKKIEISNDELQAEYE 258
           +W E      +  EY++ S     +                 +  + I++S  +++  + 
Sbjct: 133 RWIETAGGQEKLEEYRKQSVNEMRMSLHDDFKNQQLIQKMKQKLVEDIKVSPADVRRFFR 192

Query: 259 K--NKEKYFSPEIRTVEQLVFPNQKEADEA----------FQSLKKGK-KFIQLAEEQGK 305
                   F P    V+ +    + + +E              +  G+  F  LA    +
Sbjct: 193 SLPQDSIPFVPTEVEVQVIERSPKIKQEEINRVKDLLRSYTDRVTNGEITFATLARLYSE 252

Query: 306 SLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                 +G    +    + D + A+  F+L      + ++   FG+ I  + + +     
Sbjct: 253 DPVSARVGGEMDYIGRGLLDPAFANVAFNLTDPKKISKIVETDFGFHIIQLIDKRGDKIK 312

Query: 363 SFQE-VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
                +K  ++ +  I +A+E++        +  +   S +E + 
Sbjct: 313 CRHILLKPKVSAE-EIKRAAEQLDSIGT---DIRSGKFSFEEAAS 353


>gi|86148121|ref|ZP_01066421.1| parvulin-like peptidyl-prolyl isomerase [Vibrio sp. MED222]
 gi|218708410|ref|YP_002416031.1| putative parvulin-like peptidyl-prolyl isomerase [Vibrio splendidus
           LGP32]
 gi|85834108|gb|EAQ52266.1| parvulin-like peptidyl-prolyl isomerase [Vibrio sp. MED222]
 gi|218321429|emb|CAV17381.1| putative Parvulin-like peptidyl-prolyl isomerase [Vibrio splendidus
           LGP32]
          Length = 431

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 117/372 (31%), Gaps = 88/372 (23%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V    +  S    S K       +  G  + S+      L++++L+ L+      Q  E 
Sbjct: 34  VNEGVILQSDIDTSMKTLRANAKKS-GQTLPSQDV----LNEQVLEKLIIDTIQTQEAER 88

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
           IG+  D  R+   I        KDN          + +  +      +  +    R  V 
Sbjct: 89  IGVRIDDARLDQAIEGI----AKDN-------NQTVQQ--LTASVAEEGLSYNAFREQVR 135

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNY 224
                             R     R ++ +     ++  I A  +NA +           
Sbjct: 136 KEIAAS----------EARNALVRRRINILPAEVDNLADILAQETNATVQ---------- 175

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
                 +I +I    ++ +     + +EL                          + +A 
Sbjct: 176 -----YKIGHIQLRFNDDQ-----TKEEL--------------------------EAQAT 199

Query: 285 EAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           +  + L  GK F  +A    K   +L     G   KE +P    AD I  +  KG     
Sbjct: 200 DLVEELNNGKDFSTMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKGSIIGP 257

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKRLEEFLA 396
                G+ I  + ++K   TV+  EV      I     +    A E+++E  +R+    A
Sbjct: 258 FRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDDGAKEQLEEITRRVN---A 314

Query: 397 LGTSMDEISRRE 408
              S  +++++ 
Sbjct: 315 GEASFGDLAQQY 326


>gi|218960640|ref|YP_001740415.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729297|emb|CAO80208.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
          Length = 486

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 94/251 (37%), Gaps = 20/251 (7%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            +I L +     L+W +S        ++ V  +G ++  +  F + +K  L    +  G 
Sbjct: 5   VQIVLAIC----LLWTMSLISAKPDPNALVGKIGDREYNYKKFNDGFKSYLQYHGK--GK 58

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA-RSPL-------F 125
           V+  +   S+ L+ +  + L+     DQ I+   ++     +  EI    P        F
Sbjct: 59  VLTKQ--DSIKLNNQYWEELIGMYVYDQAIKAGKIKVTDAELEAEIKKNIPAEIKQIKDF 116

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
              + KF    +   L      ++E +++   + S   ++      ++ +   +  A   
Sbjct: 117 Q-TNGKFDKAKYEQALKDHPDFKREVMNYSRDLYSYNKLIKTIKNEVKANPDSVKNAWLK 175

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
             +  S   I  +   + +  + ++  +  ++E +KD ++    +  SY+L        K
Sbjct: 176 ENDYASAKIIHFDYNKLTS-VNATDDEVRAFYEAHKDEFKRENGR--SYLLARFPGNLSK 232

Query: 246 IEISNDELQAE 256
            E +  + Q  
Sbjct: 233 AENAEQKAQEN 243


>gi|170743751|ref|YP_001772406.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
           4-46]
 gi|168198025|gb|ACA19972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
           4-46]
          Length = 277

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 18/159 (11%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----------NQKEADEAFQSLKKGKK-F 296
           + +E +  YE+N  ++ +P++     ++F             +  A      L++    F
Sbjct: 101 TEEECRRYYERNPARFRTPDLFEASHILFAAARDDAAAYELARLNAQMIIAMLEEDPDTF 160

Query: 297 IQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGYVIAH 352
            +LA       S     SLG  +           ++  + + G+ +   +   +G  +  
Sbjct: 161 EELARLHSACPSGEVGGSLGQVTTGQTT-PDFEAALRGM-RPGEISRAPVETRYGVHVIR 218

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +       T+ F+     IA  +          +   RL
Sbjct: 219 LGRRLDGGTLPFEAASPRIAAYLSEALRRRAQAQYVARL 257


>gi|302345883|ref|YP_003814236.1| PPIC-type PPIASE domain protein [Prevotella melaninogenica ATCC
           25845]
 gi|302149858|gb|ADK96120.1| PPIC-type PPIASE domain protein [Prevotella melaninogenica ATCC
           25845]
          Length = 480

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 18/139 (12%)

Query: 240 HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEA----------F 287
                 + +S  E++  ++K         P    VE L    + E +E            
Sbjct: 171 QNLVNDVAVSPAEVREYFKKLPVDSIPMIPTTVEVEILTQTPKIETEEINRIKNQLRDYT 230

Query: 288 QSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             + KG+  F  LA    E+ G +     LG   +  + D + A + F+L      + V+
Sbjct: 231 DRVTKGETSFATLARLYSEDPGSARQGGELGYMGRGVL-DPAFAAAAFNLTDPKKISKVV 289

Query: 343 HGSFGYVIAHVSNIKPSFT 361
              FGY I  + + +    
Sbjct: 290 ESEFGYHIIQLIDRRGDKV 308


>gi|24115070|ref|NP_709580.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Shigella
           flexneri 2a str. 301]
 gi|30064928|ref|NP_839099.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Shigella
           flexneri 2a str. 2457T]
 gi|110807533|ref|YP_691053.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri 5 str.
           8401]
 gi|24054335|gb|AAN45287.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Shigella
           flexneri 2a str. 301]
 gi|30043189|gb|AAP18910.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Shigella
           flexneri 2a str. 2457T]
 gi|110617081|gb|ABF05748.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri 5 str.
           8401]
 gi|281603167|gb|ADA76151.1| Peptidyl-prolyl cis-trans isomerase C [Shigella flexneri 2002017]
 gi|313647778|gb|EFS12225.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri 2a str.
           2457T]
 gi|332750998|gb|EGJ81403.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri 4343-70]
 gi|332751087|gb|EGJ81491.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri K-671]
 gi|332751921|gb|EGJ82316.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri 2747-71]
 gi|332764381|gb|EGJ94616.1| PPIC-type PPIASE domain protein [Shigella flexneri 2930-71]
 gi|332996860|gb|EGK16480.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri VA-6]
 gi|332997909|gb|EGK17516.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri K-218]
 gi|332998281|gb|EGK17883.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri K-272]
 gi|333013578|gb|EGK32945.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri K-304]
 gi|333013820|gb|EGK33183.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri K-227]
          Length = 93

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +    +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLVQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 68  SCPVL-EPTGPLHTQFGYHIIKV 89


>gi|153005187|ref|YP_001379512.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028760|gb|ABS26528.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 288

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 18/157 (11%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-----------EADEAFQSLKKGKKFIQ 298
            D L+  Y   K++        V  + F  +            +A  A+  L  G  F  
Sbjct: 115 EDLLRERYAARKDQLAR-RRIHVAHVAFLARDGEPRAKAAAQSKASRAYARLAGGDAFEA 173

Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +A+E  +          LG   +  + D    ++  +L   G+F+  I   +G+ +    
Sbjct: 174 VAKEMSEDPVTGAKGGDLGPLLEGEV-DQGFFEAAAALT-AGEFSKPIETPYGFHVVKAL 231

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
               + T SF +V+  +A + R     + ++   + +
Sbjct: 232 ERVETVTPSFDDVRSALAAEARRETQVKLLERLREDV 268


>gi|255067238|ref|ZP_05319093.1| conserved hypothetical protein [Neisseria sicca ATCC 29256]
 gi|255048606|gb|EET44070.1| conserved hypothetical protein [Neisseria sicca ATCC 29256]
          Length = 287

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 80/245 (32%), Gaps = 23/245 (9%)

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
              + L+   V+   V       L LDQ+  F               H    A    A  
Sbjct: 56  ELRRELTERQVINTVV-SQEAKRLKLDQSAEFKQA----------LEHARTDAKKQGADK 104

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
              F+     + +                 ++  +   +++  Y+     Y   +   + 
Sbjct: 105 KAHFKTEWAAFESD-----LLGQAYAIHVLRQNPVQEKDVKTAYDNFSNFYKGTQEVQLG 159

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD------ 327
           +++   Q +A +A   L   K F  + ++          G   + Y+P   L +      
Sbjct: 160 EIITRTQADAQKAISDLNAKKSFASVLKQYSIDERAKQAGGIQQGYVPLKDLQEAVPPLY 219

Query: 328 -SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            ++  L K    T  +  S  Y + +V++ +     S+ E K  IA  ++ ++  E ++ 
Sbjct: 220 AAVKDLKKGAHTTTPLQDSDVYAVFYVNDRRDVKLPSYDESKSSIAQDLQASRVDEALQS 279

Query: 387 DYKRL 391
             ++ 
Sbjct: 280 LLQKA 284


>gi|112148585|gb|ABI13575.1| protease maturation protein precursor [Lactobacillus helveticus
           CNRZ32]
          Length = 301

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 74/186 (39%), Gaps = 29/186 (15%)

Query: 217 FEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
           +E YK+ Y              RA   + I          E +I+ ++ +L+A ++  + 
Sbjct: 85  YESYKERYGSQFNNFLVQGGYTRASFKRMIQINFLSRIALESQIKPTDKQLKAAWKDYQP 144

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY--- 319
                    V+ ++  ++  A++  + L  GK F  LA++     S  + G     +   
Sbjct: 145 SIT------VQHILTTSKATAEQVIEQLNDGKSFSSLAKKYSVDSSTSNNGGKLAAFNQE 198

Query: 320 --IPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
               D +  ++ + L + G++T   +  + GY +  +  +K     +F+  + ++  ++ 
Sbjct: 199 NKSLDSTFKNAAYKL-EDGEYTKTPVKVTDGYEVIKM--VKHPDKGNFESNRAELTKELY 255

Query: 377 ITKASE 382
              A+ 
Sbjct: 256 NKWAAN 261


>gi|56757089|gb|AAW26716.1| SJCHGC03333 protein [Schistosoma japonicum]
          Length = 136

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK GK+F Q+AE   +    S   LG  S+  +   +  D+
Sbjct: 44  KVRHILCEKYSKCLEALEQLKNGKRFNQVAELYSEDKARSGGDLGWMSRGSMVG-AFQDA 102

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L              +   +GY I  V   +
Sbjct: 103 AFNLPVSTLENPKYTVSPVKTQYGYHIIMVEGRR 136


>gi|153809076|ref|ZP_01961744.1| hypothetical protein BACCAC_03384 [Bacteroides caccae ATCC 43185]
 gi|149128409|gb|EDM19628.1| hypothetical protein BACCAC_03384 [Bacteroides caccae ATCC 43185]
          Length = 460

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/367 (11%), Positives = 100/367 (27%), Gaps = 54/367 (14%)

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI----ADPSN 210
               +     +       +        + +     R      L  + +          + 
Sbjct: 97  QRVDMLTNMYIQQIGSREKMEEYFNKTSAQIRETLRDNARDGLTVQKMQQKLVGEIKVTP 156

Query: 211 AVLTQWFEKYKDNYR--APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           A + ++F+    +     P    +  I         +IE     L+              
Sbjct: 157 AEVRRYFKDLPQDSIPYIPTQVEVQIITLQPKIPVAEIEDVKKRLRDY------------ 204

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323
                                + KG+  F  LA    E++  ++     G   +  + D 
Sbjct: 205 ------------------TDRVTKGEIDFSTLARLYSEDKASAIKGGECGFMGRG-MMDP 245

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           S A+  FSL      + ++   FGY I  +   +     +       +  ++   + +E 
Sbjct: 246 SYANVAFSLQDPKKVSKIVESEFGYHIIQLIEKRGDRVNTR---HILLRPKVSEKELTEA 302

Query: 384 VKEDYKRLEEFLALGTSMDEIS-------RREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
                   ++  A   S DE +              I + + + +G      ++  +P  
Sbjct: 303 CARLDSIADDIRANKFSFDEAAAVISHDKDTRNNHGIMVNINENSGVTTSKFQMQDLPQD 362

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
              +       +       +   DG  +   V++K  I      + E   D+K+     +
Sbjct: 363 VAKVVDKMNVGEISKAFTMINEKDGKEVCAIVKLKAKINGHKATIAEDYQDLKEIVMDKR 422

Query: 495 TAEEVSS 501
             E +  
Sbjct: 423 REEMLHK 429


>gi|209921249|ref|YP_002295333.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE11]
 gi|209914508|dbj|BAG79582.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE11]
          Length = 93

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQIKNGANFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 68  SCPVL-EPTGPLHTQFGYHIIKV 89


>gi|153007316|ref|YP_001381641.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030889|gb|ABS28657.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 339

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 87/216 (40%), Gaps = 31/216 (14%)

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
           N + +    +     L ++++ +K +Y  P+  R++ ++++                   
Sbjct: 108 NFQDLEGAKNLPEPELQKYYDDHKSDYFRPKRVRLAAVIWNAPA---------------- 151

Query: 258 EKNKEKYFSPEI--RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
                   SPE   +  +      + +A+E   +L   +   Q +E+     +   L   
Sbjct: 152 -------GSPERAKKLAQAKAALAKIKAEEKKNALAFNQAVAQYSEDAATKSAGGDLQFK 204

Query: 316 SKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           S E +       LAD+ F+L + G  + VI    G  +  ++  +     SF +VK  IA
Sbjct: 205 SHEELSQAFSKELADAAFAL-QAGQTSGVIETPKGLYLLKLTAQQEELNRSFDQVKTQIA 263

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
           N++   + +++  E  KRL++   +  S+DE +   
Sbjct: 264 NKLYRERKTKEFDEWLKRLKDEAKI--SVDEKALEA 297


>gi|223984303|ref|ZP_03634447.1| hypothetical protein HOLDEFILI_01741 [Holdemania filiformis DSM
           12042]
 gi|223963736|gb|EEF68104.1| hypothetical protein HOLDEFILI_01741 [Holdemania filiformis DSM
           12042]
          Length = 365

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/317 (11%), Positives = 101/317 (31%), Gaps = 50/317 (15%)

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           +  + I   E+ D     +    V       +   ++   +  +   ++           
Sbjct: 48  IGDQDITAGEFYDTLFNEMGVAGVYQFMEKAVVDPSIETTEEMKTQAQSY--------AD 99

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF-DVHEKEKKIEISNDELQAEYEK 259
            + A    +      + ++YK+         + Y    D+ +    I+ +   ++     
Sbjct: 100 SITAQYQST------YGDQYKEMLLT-ALNGVGYSKLSDLTDYFIHIQKTQQMIKDYINA 152

Query: 260 NKEKY-----FSPEIRTVEQLVFPNQKEAD----------EAFQSLKKGKKFIQLAEE-- 302
           + ++Y      + + R V  ++      A+              +L  G+ F ++A+E  
Sbjct: 153 HADEYIPAYVEAKKPRIVSHILIKMDDPANPTEEETNRVNAVKDALASGRDFGEVAQELS 212

Query: 303 --QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
              G ++ + S+G    +        ++  ++  +G+ +  I  ++G+ I          
Sbjct: 213 EDSGSAVQNGSIGYMDADSQLVSPFLETALAM-NEGEVSEWIQTTYGWHIIKCDVSSTET 271

Query: 361 TVSFQEVKKDIAN-------QMRITKASEKVKEDY--KRLEEFLALGTSMDEISRREKIV 411
              + E    +A        ++   KA E   +      L+  L     +  +   EK  
Sbjct: 272 LKGYDEFYDALATYYPNLQPKVVWEKAQEMNLDFKGNDELQNKL-----LIYMGLNEKDE 326

Query: 412 SIDLPLVDFAGKDVKGK 428
               P      ++ +G+
Sbjct: 327 PETQPETTENTENPEGQ 343


>gi|89075561|ref|ZP_01161966.1| putative survival protein SurA [Photobacterium sp. SKA34]
 gi|89048701|gb|EAR54273.1| putative survival protein SurA [Photobacterium sp. SKA34]
          Length = 433

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 78/495 (15%), Positives = 147/495 (29%), Gaps = 90/495 (18%)

Query: 22  FVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
            +  ++ G+S    +        V++V    +  S   N+  + + + + +    +    
Sbjct: 8   VLSLMMMGMSATSMAAPQELDQVVMTVNDGVILQSDV-NAMLKTVHLNAAEEHQQLPPNN 66

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                L ++++D L+      Q  + +G+  D  ++   IA       K    S D    
Sbjct: 67  I----LRQQVMDKLILENLQLQQAQQLGIRIDDSQLDKAIADV----AKQRNMSVDQLRQ 118

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            LA  GI+   + +     +                            E R++       
Sbjct: 119 SLANAGISYAMFREQMRNDM-------------------------LASEARNII------ 147

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
             V    +     +    ++     +      IS I   V E   K              
Sbjct: 148 --VRKRVNVLPQEVESLAKQMAKQTQQNVQYNISQIQIRVDEDADKAA------------ 193

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFS 316
            ++K        V QL               KKG  F QLA       K+L     G   
Sbjct: 194 -RDKAKQEAEDIVAQL---------------KKGANFSQLAYRYSKGPKALKGGEWGWMG 237

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IAN 373
           K  +P    AD I +  K            G+ I  ++++K   +VS  EVK     I  
Sbjct: 238 KAEMP-TVFADQIQNNGKN-AIIGPFRSGVGFHILKINDVKGMPSVSVVEVKARHILIKP 295

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
            M ++ A+ K +   +++ + +  G      S   K  S D       G+          
Sbjct: 296 SMILSDAAAKAE--LEKIRQSIISGK--QTFSAAAKAYSEDPGSAVNGGQLGWQVPNMYA 351

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
           P  +  +  +     P+ K          +  V+++      DR    +     +     
Sbjct: 352 PAFKDKVETL-----PVDKISEPFKSSFGWHIVEVEGRRKV-DRTDAAMKNRAAQIIFNR 405

Query: 494 KTAEEVSSKANQLVL 508
           K  EE  +   +L  
Sbjct: 406 KFNEEAQTWLQELRA 420


>gi|328956331|ref|YP_004373664.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Coriobacterium
           glomerans PW2]
 gi|328456655|gb|AEB07849.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Coriobacterium
           glomerans PW2]
          Length = 404

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/418 (11%), Positives = 113/418 (27%), Gaps = 112/418 (26%)

Query: 11  TWVAKIFLVVLFV--------PFLIWGLSDALFSVSG----SSTVVSVGRQKVPFSSFIN 58
             + KI LV + V             G+ +   +            +V    +   S   
Sbjct: 34  GRIVKIVLVAIGVFAMLLSVTTMACAGIMNQAKTKKSYELTGGVAATVNGVNIKEDSITE 93

Query: 59  SWKQELGMISQKIGFVVNSER----------ARSVGLDKKILDNLVSGATLDQFIEDIGL 108
                  ++  K G   +++                L K  + +L     ++   +   +
Sbjct: 94  ------QIMQTKEGGKYDTDEKWAKYLVDSNQTPEELRKTKIKSLAKQYLIEDAEKKHDI 147

Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
                 +  +      +  +  K+  +  F+ ++ + G+ E  Y       L +  +   
Sbjct: 148 TVSDDELNDD------WKDQVKKYDSEQAFIDQIKKMGMTEASYKSSIRNSLMQKKL--- 198

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
                                             V    DPS+  +  +  K    Y   
Sbjct: 199 -------------------------------KEEVAPEKDPSDQDIIDYVNKDISKYN-- 225

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           + +R S ILF +     +                                  +++A    
Sbjct: 226 DARRSSNILFKIESGADEQSD----------------------------AKVKEKAQGVL 257

Query: 288 QSLKKGK-KFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             +  G+  F   AE+  +          +G   K         D++ +LA     + ++
Sbjct: 258 DKINSGELTFEDAAEKYSEDDGSKKDKGDVGW-DKLTTFVKEYQDALNNLAAD-QVSGLV 315

Query: 343 HGSFGYVIAHVSN--IKPSFTVSFQE----VKKDIANQMRITKASEKVKEDYKRLEEF 394
             ++GY I   +          S  +    +K+ I++ ++   +S+        L + 
Sbjct: 316 KSTYGYHIIRCTGYFHVDGTVNSIDQIPKNMKEKISDTIKKDSSSKAYTAWEDDLVDK 373


>gi|288803874|ref|ZP_06409299.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella
           melaninogenica D18]
 gi|288333639|gb|EFC72089.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella
           melaninogenica D18]
          Length = 459

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 18/139 (12%)

Query: 240 HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEA----------F 287
                 + +S  E++  ++K         P    VE L    + E +E            
Sbjct: 150 QNLVNDVAVSPAEVREYFKKLPVDSIPMIPTTVEVEILTQTPKIETEEINRIKNQLRDYT 209

Query: 288 QSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             + KG+  F  LA    E+ G +     LG   +  + D + A + F+L      + V+
Sbjct: 210 DRVTKGETSFATLARLYSEDPGSARQGGELGYMGRGVL-DPAFAAAAFNLTDPKKISKVV 268

Query: 343 HGSFGYVIAHVSNIKPSFT 361
              FGY I  + + +    
Sbjct: 269 ESEFGYHIIQLIDRRGDKV 287


>gi|81428241|ref|YP_395241.1| peptidylprolyl isomerase [Lactobacillus sakei subsp. sakei 23K]
 gi|123564491|sp|Q38XZ9|PRSA_LACSS RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|78609883|emb|CAI54930.1| Protein maturation protease precursor (peptidylprolyl isomerase)
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 303

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 62/161 (38%), Gaps = 16/161 (9%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           +I+  +      +   +++N +L+ +++  + K        V+ ++   +  A+     L
Sbjct: 107 QITTQMLANAALKANKKVTNADLKKQWKTYEPK------VEVQHILVEKKDTAETVISEL 160

Query: 291 KKG---KKFIQLAEEQGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
           KK    K F  LA++          G       S +   D +   + F L      T  +
Sbjct: 161 KKDNSTKNFTALAKKYSTDTGTKKDGGKLPVFDSTDTSLDPTFKTAAFKLKTNEYTTTPV 220

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             S+GY +  +  IK        + KK + +Q+    A+++
Sbjct: 221 KTSYGYHVIRM--IKNPGKGKMADHKKTLTDQVYAKWANDQ 259


>gi|32473571|ref|NP_866565.1| peptidyl-prolyl cis-trans isomerase [Rhodopirellula baltica SH 1]
 gi|32398251|emb|CAD78346.1| probable peptidyl-prolyl cis-trans isomerase [Rhodopirellula
           baltica SH 1]
          Length = 626

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 90/256 (35%), Gaps = 25/256 (9%)

Query: 220 YKDNYRAPEYKRISYILFDVHE---KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
            ++    P+      I   +        ++ +S DE          ++   E      ++
Sbjct: 149 NEERDITPDQYSREIIWPMLALRKLVADEVAVSQDE---FNRAFVSQFG--EAIKCRMVM 203

Query: 277 FPNQKEADEA-FQSLKKGKKFIQLAEEQGKSLSDISLGSF---SKEYIPDVSLADSIFSL 332
             ++ +A +   Q++ +   F +LA+E  +  +  S+G      + Y+ D ++ ++ F+L
Sbjct: 204 VQDKSQATQLRAQAVAEPSSFARLAKEFSEDPTSASVGGLIPPIRRYMGDETIEEAAFAL 263

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS-------FQEVKKDIANQMRITKASEKVK 385
            K  + + ++     ++        P+ T S         +++  I ++   T AS+   
Sbjct: 264 -KVDEVSELLPVGDHWMFLQAVRRMPASTPSPQAMPAIKDQIEDRIRDEKMKTAASQLFA 322

Query: 386 EDYKRLEEFLALGTSMDE-----ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
           +  ++ +    LG          ++       + +  V        G+ V       +LL
Sbjct: 323 QLQEQAQVVKILGAPQASAKHPGVAAIINGQQVSISNVAAECIKRHGESVLEGEINRKLL 382

Query: 441 FRVFGKDDPLSKDHTV 456
            +   K      +  +
Sbjct: 383 TQALAKAGKKVTNEDL 398



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 50/151 (33%), Gaps = 29/151 (19%)

Query: 20  VLFVPFL--IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           +L   F+  + G S      + +S V  V    +   S   +         Q+ G     
Sbjct: 50  LLAAAFVAILSGFSTMRVEAAENSVVAVVNADPISRDSLATA-------SVQRYGTD--- 99

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
                      +LDNL++   + Q  +  GL      V  EI R      K    + + +
Sbjct: 100 -----------VLDNLINRHLIMQECKRRGLGVTTEEVRTEINRV----AKKFGLNVESY 144

Query: 138 VSRLAREG-INEKEY-IDHYTKMLSRTDVVG 166
           +  L  E  I   +Y  +    ML+   +V 
Sbjct: 145 LQLLNEERDITPDQYSREIIWPMLALRKLVA 175



 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 62/158 (39%), Gaps = 12/158 (7%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK---FIQ 298
            E +  ++ ++LQ  +E +           V   V  +Q+ A + ++  +       F Q
Sbjct: 453 VEDETVLTQEDLQIGFESHYGP-----RAEVLACVLSDQRSAQKVWEMARDNPTDQFFGQ 507

Query: 299 LAEEQGKSL-SDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           LA +      S  + G     +++    S+   +F + K GD + +I     Y+I     
Sbjct: 508 LANQYSIEPVSSSNFGKVPPIRQHGGQPSVEKEVFQM-KPGDLSGIIATGDKYIILRCQG 566

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                   F+ V++++ + +   K +  +   Y  L++
Sbjct: 567 FTEPVVSDFEAVQEELRSVLIEKKMNVAMSLKYDELKQ 604


>gi|157826081|ref|YP_001493801.1| hypothetical protein A1C_05205 [Rickettsia akari str. Hartford]
 gi|157800039|gb|ABV75293.1| hypothetical protein A1C_05205 [Rickettsia akari str. Hartford]
          Length = 296

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 67/193 (34%), Gaps = 17/193 (8%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K+ L+++ V F        +   S  + V SV  + +  + F  + K+ +  ++   G  
Sbjct: 3   KLILIIITVFFTF-----NVAQASLPNIVASVNDEPITLNEF-RARKKMIMALNNVDG-- 54

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           +   + +   L    + +L+  + L Q+  D   E     +   I          NK   
Sbjct: 55  LTPSQDKQ--LSDLAIKSLIDESLLFQYAGDR--EIPQEEIDNAIKSIE----DRNKMPQ 106

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVD 193
              +  L    +N   +I      L + +++      ++ SN  +D A     +    + 
Sbjct: 107 GSLLQYLESRSVNPNSFIAQIKSELIKMNILSSLSRSVQVSNKEIDAAILSSDQKDVEIS 166

Query: 194 YIVLNNRHVPAIA 206
             V  ++     A
Sbjct: 167 MQVFTSQDSSKKA 179


>gi|326569504|gb|EGE19564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis BC8]
          Length = 367

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 100/331 (30%), Gaps = 65/331 (19%)

Query: 71  IGFVVNSERARSVGLDKKILD--NLVSG--ATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           +G   +  +     LDK+I D  NL++    TL     + G+  D   V  E+   P   
Sbjct: 77  LGRPSSDAQFIKQALDKEIFDSTNLIASSHQTLPNITVN-GVAIDPKAVAAEVQYHPA-- 133

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
              N     +F++                 + L R +V+                 +R +
Sbjct: 134 ---NSQEEALFLAA-----------QALVMRELLRQEVIECLG-------------ERAW 166

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            EN       L  + V A   P  A    ++   +  + +     + +IL     +E + 
Sbjct: 167 LENEEATIAKLLEQQVIAK-SPDKASCQNYYHANQVEFVSTPIMTLRHILLACPPQEGEE 225

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            I   EL+ +  +  ++      R                         FI+ A      
Sbjct: 226 RI---ELKKQARQLIDRLNQSHNRD----------------------SDFIEFARRYSAC 260

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG   K          ++F+L   G     I   +G  +  V   +    +S
Sbjct: 261 PSKDDGGELGVLQKGSTV-PEFESAVFALP-VGISINPIETRYGIHVIEVLQKQEGRQLS 318

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           F+E    I N ++       + +    L + 
Sbjct: 319 FEEAYPIIENHLKQQSFHHSLCDYLFELSQK 349


>gi|227510549|ref|ZP_03940598.1| peptidylprolyl isomerase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190201|gb|EEI70268.1| peptidylprolyl isomerase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 293

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 72/195 (36%), Gaps = 27/195 (13%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
              ++ + + F KYK  Y               +     I   L          + ++ +
Sbjct: 68  KVKDSAVNKDFNKYKKQYGSSFNAVLQQNGMTASQLKDSIRSNLLLQQAVRDNTKFTDAQ 127

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+A+++  + K       TV Q++   +  A+   + LK GK F  LA++     +  + 
Sbjct: 128 LKAQFKSYQPK------VTVNQILVSKKSTAETVIKQLKAGKSFSSLAKKYSTDTATKNK 181

Query: 313 G-----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           G       +     D +   + F L         +   +GY +  + N  P+   ++++ 
Sbjct: 182 GGRISAFDNTNTSLDSNFKKAAFKLKNGDYTKTPVKTQYGYQVIQMVN-HPAKG-TYKDH 239

Query: 368 KKDIANQMRITKASE 382
           + ++  Q+   + ++
Sbjct: 240 ESELKTQLVDKRLAD 254



 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 58/187 (31%), Gaps = 36/187 (19%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           ++ +  ++        +  GS +V +    K+  S++ +S                    
Sbjct: 5   LIVLAGVLM---SFTLAACGSKSVATTNGGKITESAYYSS-------------------- 41

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
            +     K++L  ++    L+   +  G +     V  +  +   +  +        F +
Sbjct: 42  LKGTSSGKQVLQQMILNKVLE---KQYGKKVKDSAVNKDFNK---YKKQYGS----SFNA 91

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L + G+   +  D     L             + ++  L    + Y    +V+ I+++ 
Sbjct: 92  VLQQNGMTASQLKDSIRSNLLLQQ---AVRDNTKFTDAQLKAQFKSYQPKVTVNQILVSK 148

Query: 200 RHVPAIA 206
           +      
Sbjct: 149 KSTAETV 155


>gi|148268312|ref|YP_001247255.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|147741381|gb|ABQ49679.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Staphylococcus
           aureus subsp. aureus JH9]
          Length = 271

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 47/185 (25%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +KYK N R   Y +             KI+IS+ E++             + +    ++ 
Sbjct: 110 DKYKQNLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 149

Query: 278 P-----------NQKEADEAFQSLKK-----GKKFIQLAEEQ----GKSLSDISLGSFSK 317
                       + KEA +  + ++K       KF ++A+++    G +  D  LG   K
Sbjct: 150 KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLK 209

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
               D     ++F L K G+ + V+  SFGY I             F   K+ +  ++  
Sbjct: 210 GQT-DKDFEKALFKL-KDGEVSEVVKSSFGYHIIK-----ADKPTDFNSEKQSLKEKLVD 262

Query: 378 TKASE 382
            K  +
Sbjct: 263 QKVQK 267


>gi|315123321|ref|YP_004065327.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas sp. SM9913]
 gi|315017081|gb|ADT70418.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas sp. SM9913]
          Length = 92

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  +++ A++  + L KG KF  LA++     S      LG F +  +       
Sbjct: 6   HALHILVKHKEIAEDIIKQLGKGAKFQTLAKKYSSCPSGKKGGDLGEFRRGQMV-PQFDK 64

Query: 328 SIFSLAKKGDFTPVI--HGSFGYVIAHV 353
             FS    G           FG+ +  V
Sbjct: 65  VAFS----GAILEPHLVKTKFGWHVIKV 88


>gi|283834548|ref|ZP_06354289.1| peptidyl-prolyl cis-trans isomerase [Citrobacter youngae ATCC
           29220]
 gi|291069678|gb|EFE07787.1| peptidyl-prolyl cis-trans isomerase [Citrobacter youngae ATCC
           29220]
          Length = 93

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++   +K A +  + +K G  F +LA++     S      LG F +  +   +   
Sbjct: 6   AAVHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDK 64

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHV 353
            +FS          +H  FGY I  V
Sbjct: 65  LVFSCPVLEPV-GPLHTQFGYHIVKV 89


>gi|260769945|ref|ZP_05878878.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio furnissii CIP
           102972]
 gi|260615283|gb|EEX40469.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio furnissii CIP
           102972]
 gi|315182059|gb|ADT88972.1| peptidyl-prolyl cis-trans isomerase C [Vibrio furnissii NCTC 11218]
          Length = 92

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++AD+  Q LKKG KF  LA++     S      LG F +  +       + F
Sbjct: 9   HILVKHKEQADDIMQQLKKGAKFQTLAKKYSLCPSGKKGGDLGEFRQGQMV-PQFDKACF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
               KG+          FG+ +  V
Sbjct: 68  ----KGEILTPQLVKTKFGWHVIKV 88


>gi|261749107|ref|YP_003256792.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497199|gb|ACX83649.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 421

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 118/327 (36%), Gaps = 33/327 (10%)

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE----YKRISYILFDVHEKEKKIEISN 250
           + ++N+ + +        L ++   +  N+   E     K   YI     + ++ IEIS 
Sbjct: 86  LQIDNQEIQSKK---EEFLKEFNSNFSKNFSLEELTEKIKNNQYIEKFYQKMKEDIEISP 142

Query: 251 DELQAEYEKNKEKY-FSPEIRTVEQLVFP---NQKEADEAFQSLKK-------GKKFIQ- 298
           +E++  + K KEK    P+   V  ++     +++  ++    LKK        K F   
Sbjct: 143 EEVKYFFNKEKEKLPIIPKKICVSYMILSPKFSKEHREKIVNFLKKIKKEIHSDKDFSMK 202

Query: 299 ---LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              L+E+   +     +    K+ I        +FSL +K   +       G+ +  +  
Sbjct: 203 AILLSEDYSSAFKGGLINGVKKKNISK-EFERIVFSLEEK-QISEPFETDLGFHLVKLEK 260

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSID 414
            +        +++  +       +   K K     ++  L     S + IS    ++   
Sbjct: 261 KRGEEI----DIRHILIQPKYTEEELRKAKSFAYEIKNHLINHKISFETISNERPLLHNG 316

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW-VQIKESIP 473
           +       K +  +E       ++ L  +  KD  +S+ +   +      + V++ +  P
Sbjct: 317 IVN-HSVWKKIWVEENQISKNMKKTLQNL--KDGEISEPYKEIVNGKEVFFIVKLLKRKP 373

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVS 500
           +     +E  T +K     +K  E++ 
Sbjct: 374 SHPISFKEDYTQLKNLVMNIKQEEKIK 400



 Score = 40.0 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 19/142 (13%)

Query: 268 EIRTVEQLVFPNQ------KEADEAFQSLKKGK-----KFIQLAEEQGKSLSDI-SLGSF 315
           E   +  ++   +      ++A      +K         F  ++ E+    + I +   +
Sbjct: 264 EEIDIRHILIQPKYTEEELRKAKSFAYEIKNHLINHKISFETISNERPLLHNGIVNHSVW 323

Query: 316 SKEYIPDVSLAD---SIFSLAKKGDFTPVIH----GSFGYVIAHVSNIKPSFTVSFQEVK 368
            K ++ +  ++          K G+ +        G   + I  +   KPS  +SF+E  
Sbjct: 324 KKIWVEENQISKNMKKTLQNLKDGEISEPYKEIVNGKEVFFIVKLLKRKPSHPISFKEDY 383

Query: 369 KDIANQMRITKASEKVKEDYKR 390
             + N +   K  EK+K   K 
Sbjct: 384 TQLKNLVMNIKQEEKIKNWIKN 405


>gi|258622473|ref|ZP_05717495.1| peptidyl-prolyl cis-trans isomerase C [Vibrio mimicus VM573]
 gi|258625154|ref|ZP_05720070.1| peptidyl-prolyl cis-trans isomerase C [Vibrio mimicus VM603]
 gi|261212993|ref|ZP_05927277.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio sp. RC341]
 gi|262164493|ref|ZP_06032231.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio mimicus VM223]
 gi|262173338|ref|ZP_06041015.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio mimicus MB-451]
 gi|258582529|gb|EEW07362.1| peptidyl-prolyl cis-trans isomerase C [Vibrio mimicus VM603]
 gi|258585173|gb|EEW09900.1| peptidyl-prolyl cis-trans isomerase C [Vibrio mimicus VM573]
 gi|260838058|gb|EEX64735.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio sp. RC341]
 gi|261890696|gb|EEY36683.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio mimicus MB-451]
 gi|262026873|gb|EEY45540.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio mimicus VM223]
          Length = 92

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++AD+    LKKG KF  LA++     S      LG F +  +   +   + F
Sbjct: 9   HILVKHKEQADDILAQLKKGAKFHVLAKKYSLCPSGKKGGDLGEFRQGQMV-PAFDKACF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
               +G+          FG+ +  V
Sbjct: 68  ----QGEVLTPQLVKTKFGWHVVKV 88


>gi|227524701|ref|ZP_03954750.1| peptidylprolyl isomerase [Lactobacillus hilgardii ATCC 8290]
 gi|227088185|gb|EEI23497.1| peptidylprolyl isomerase [Lactobacillus hilgardii ATCC 8290]
          Length = 293

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 77/196 (39%), Gaps = 29/196 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
              ++ + + F KYK  Y               +     I   L          + ++ +
Sbjct: 68  KVKDSAVNKDFNKYKKQYGSSFNAVLQQNGMTASQLKDSIRSNLLLQQAVRDNTKFTDAQ 127

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+A+++  + K       TV Q++   +  A+   + LK GK F  LA++     +  + 
Sbjct: 128 LKAQFKSYQPK------VTVNQILVSKKSTAETVIKQLKAGKSFSSLAKKYSTDTATKNK 181

Query: 313 G-----SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQE 366
           G       +     D +   + F L K G++T   +   +GY +  + N  P+   ++++
Sbjct: 182 GGRISAFDNTNTSLDSNFKKAAFKL-KNGEYTKTPVKTQYGYQVIQMVN-HPAKG-TYKD 238

Query: 367 VKKDIANQMRITKASE 382
            + ++  Q+   + ++
Sbjct: 239 HESELKTQLVDKRLAD 254



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/187 (10%), Positives = 57/187 (30%), Gaps = 36/187 (19%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           ++ +  ++        +  GS +V +    K+  S++ +S                    
Sbjct: 5   LIVLAGVLM---SFTLAACGSKSVATTNGGKITESAYYSS-------------------- 41

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
            +     K++   ++    L+   +  G +     V  +  +   +  +        F +
Sbjct: 42  LKGTSSGKQVFQQMILNKVLE---KQYGKKVKDSAVNKDFNK---YKKQYGS----SFNA 91

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L + G+   +  D     L             + ++  L    + Y    +V+ I+++ 
Sbjct: 92  VLQQNGMTASQLKDSIRSNLLLQQ---AVRDNTKFTDAQLKAQFKSYQPKVTVNQILVSK 148

Query: 200 RHVPAIA 206
           +      
Sbjct: 149 KSTAETV 155


>gi|163848606|ref|YP_001636650.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526541|ref|YP_002571012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
           Y-400-fl]
 gi|163669895|gb|ABY36261.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222450420|gb|ACM54686.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
           Y-400-fl]
          Length = 302

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 8/114 (7%)

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ----GKSLSDISLGSFSK 317
            +    ++     ++  ++  A      L+ G  F  LA ++    G + +   LG   +
Sbjct: 145 ARNTRADMARARHILVADEATAQATLAELQAGADFATLAAQRSQDTGSAANGGDLGWTPR 204

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-VSFQEVKKD 370
                    ++IFSL        ++   FG+ I  V   +      SF +++  
Sbjct: 205 GEFV-PQFEEAIFSLPLN--TPQIVQTDFGFHIVEVLERESQRPFSSFDDLRTR 255



 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 7/113 (6%)

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-ARSPLFHGKDNKFSHDVFVSRLAR 143
           L ++I + ++    L Q+    G+  D   +  EI AR P               + LAR
Sbjct: 80  LRRQIFEQMIQNELLLQYARQHGIGIDPAALDAEIAARLPADADPAEVQD---LRNVLAR 136

Query: 144 EGINEKEYIDHYTKMLSRT---DVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           E I       +    ++R     V          + L            RS D
Sbjct: 137 EQIVFAVIARNTRADMARARHILVADEATAQATLAELQAGADFATLAAQRSQD 189


>gi|289550444|ref|YP_003471348.1| Foldase protein PrsA precursor [Staphylococcus lugdunensis
           HKU09-01]
 gi|289179976|gb|ADC87221.1| Foldase protein PrsA precursor [Staphylococcus lugdunensis
           HKU09-01]
          Length = 322

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 67/162 (41%), Gaps = 15/162 (9%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK---EADEAFQSLKKGKK-FI 297
              KI++S+ +++   +K        + +  ++    ++K   +A+E  + ++K    F 
Sbjct: 126 LADKIKVSDKDVKDNSKKASHILIKVKSKDSDKEGLSDKKAKEKAEEIQKQVEKDPSKFG 185

Query: 298 QLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           ++A+++    S    D SLG   K  + D     ++F L K+G  + VI   +GY I   
Sbjct: 186 EIAKKESMDSSSAKKDGSLGYVIKGQMVD-EFEKALFDL-KEGKVSKVIKTDYGYHIIK- 242

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
                     F   K +I  +M   K  +  K      ++ L
Sbjct: 243 ----ADKESDFNSEKANIKEKMIEQKVQKNPKLLTDAYKDLL 280


>gi|126740048|ref|ZP_01755738.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           SK209-2-6]
 gi|126718867|gb|EBA15579.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           SK209-2-6]
          Length = 265

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 67/188 (35%), Gaps = 19/188 (10%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-- 278
              +   E   I  +L     +      ++DE++AE+ ++  ++ S  +  V  ++    
Sbjct: 70  PGRFETDEEALIRGLL---ETEVDVKSPTDDEIKAEWARDPARFRSAPLWEVSHILCACD 126

Query: 279 --NQKEADEAFQS--------LKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSL 325
             +++  ++A +         L K   F  LA+++   G   +  SLG            
Sbjct: 127 PRDEEGREKALKKAQFLTATLLAKPSIFASLAKKESDCGSKEAGGSLGQLRPGDSV-PEF 185

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
              +F L +       +    GY I  +  +     + F+  K+ I   M     +   +
Sbjct: 186 EQVLFDLEQGQITAEPVLSRHGYHIVRMDALAEGQELPFEAAKRSIMLAMEKAAWTRAAQ 245

Query: 386 EDYKRLEE 393
              ++L E
Sbjct: 246 AYVQKLIE 253


>gi|296122979|ref|YP_003630757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           limnophilus DSM 3776]
 gi|296015319|gb|ADG68558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           limnophilus DSM 3776]
          Length = 377

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 89/258 (34%), Gaps = 34/258 (13%)

Query: 163 DVVGMFVGGMRPSNLLLDQ-AKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            V+      + P +++ ++   R+  E     ++  ++      A    +   +T    +
Sbjct: 72  KVMARVNKEIIPFDMVAEECVARYGKEVLDDIINRTMIQQACEAAGVTVTEEEVTAEINR 131

Query: 220 YKDNY----------------RAPEYKRISYILFDVHEKE---KKIEISNDELQAEYEKN 260
               +                  P+  R S I   +  K+   +KI+I  +EL   + +N
Sbjct: 132 IAKRFNLDVNNWYQMLQAERGINPQQYRRSVIWPMLALKKLASEKIDIKEEELNRAFVRN 191

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKE- 318
                         ++  N + A   ++        F + A+E        +LG      
Sbjct: 192 YGP-----RVKARMILMDNLRRATTVWEKANADADNFEKYAQEFSIDPQSRALGGSVPPI 246

Query: 319 --YIPDVSLADSIFSLAKKGDFTPVIH-GSFGYVIAHVSNIKPSFTVSF-QEVKKDIANQ 374
             Y  + SL  + F+L K+G+ + VI  G   + I               QE++  + ++
Sbjct: 247 PKYSGNDSLEKAAFAL-KEGEISGVIEVGPSRFAIIKCEGRTVPTVNELTQEIRDSLYDE 305

Query: 375 MRITKASEKVKEDYKRLE 392
           +   K    V + ++ ++
Sbjct: 306 LAEQKTQVSVAKTFEEIQ 323



 Score = 38.8 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 74/229 (32%), Gaps = 22/229 (9%)

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV---FVSRLAR 143
           K++LD++++   + Q  E  G+      V  EI R         +F+ DV   +    A 
Sbjct: 97  KEVLDDIINRTMIQQACEAAGVTVTEEEVTAEINRIA------KRFNLDVNNWYQMLQAE 150

Query: 144 EGINEKEYIDHYT-KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
            GIN ++Y       ML+   +    +        L     R Y        I+++N   
Sbjct: 151 RGINPQQYRRSVIWPMLALKKLASEKID--IKEEELNRAFVRNYGPRVKARMILMDNLRR 208

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK--------EKKIEISNDELQ 254
                         FEKY   +      R          K        +    +   E+ 
Sbjct: 209 ATTVWEKANADADNFEKYAQEFSIDPQSRALGGSVPPIPKYSGNDSLEKAAFALKEGEIS 268

Query: 255 AEYEKNKEKYF--SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
              E    ++     E RTV  +    Q+  D  +  L + K  + +A+
Sbjct: 269 GVIEVGPSRFAIIKCEGRTVPTVNELTQEIRDSLYDELAEQKTQVSVAK 317


>gi|221069847|ref|ZP_03545952.1| SurA domain protein [Comamonas testosteroni KF-1]
 gi|220714870|gb|EED70238.1| SurA domain protein [Comamonas testosteroni KF-1]
          Length = 475

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 10/148 (6%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +  +       +    ++++ G + +        L +++L+ L+      Q 
Sbjct: 73  VAVVNSEPITNNEVRARMARVAQNVTEQGGQLPS-----QSELARQVLERLIVERVQLQE 127

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
             D G+  D+  V   +A       + N       VSRL  EGI+E ++       +   
Sbjct: 128 ARDTGINVDNLAVDQAVANV----ARQNSTDRAGLVSRLKAEGISEAQFRAEIRSQMLMQ 183

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENR 190
            V    V G R      D  +    + R
Sbjct: 184 RVRERDVDG-RVKVTEADIDRYLKEQKR 210



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 16/136 (11%)

Query: 269 IRTVEQLVFPNQK---EADEAFQ------SLKKG-KKFIQLAEEQGKSLS---DISLGSF 315
                 ++    +   EA  A +       ++ G   F QLA+E  K  S      LG  
Sbjct: 330 QNHARHILLTVGEGMTEAQAAKRLEDYKRRVEAGQATFQQLAQEFSKDGSARNGGDLGWS 389

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           S            + SL + G  +  +   FG  +  +   +       ++ ++ + N +
Sbjct: 390 SPGQFV-PEFERVLDSL-QPGQISNPVVSRFGVHLIQLIERRQEKLTEREQ-REMVRNVV 446

Query: 376 RITKASEKVKEDYKRL 391
           R  KA +  +   K L
Sbjct: 447 RERKAEQDYETWLKEL 462



 Score = 38.8 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 48/374 (12%), Positives = 114/374 (30%), Gaps = 51/374 (13%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             ++ R  +      G+   NL +DQA        S D   L +R               
Sbjct: 117 RLIVERVQLQEARDTGINVDNLAVDQAVANVARQNSTDRAGLVSRLKAEGIS-------- 168

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE--KYFSPEIRTVE 273
                +  +RA    ++        + + +++++  ++    ++ K   +  +     + 
Sbjct: 169 -----EAQFRAEIRSQMLMQRVRERDVDGRVKVTEADIDRYLKEQKRPGEAAAGAAANLG 223

Query: 274 QLVFPNQKEADEAFQS------------LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
            ++    + A  A                +K   FI    E     +    G+     + 
Sbjct: 224 HILITVPENASPAVVEEREARAKQAAEAARKNPDFIAAVREFSDVPNGQGGGAMGMRAMS 283

Query: 322 D-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF------QEVKKDIANQ 374
           D   L       A  G          G+ +  V     S    +      + +   +   
Sbjct: 284 DYPELFVQQVGNAAVGAIVGPFRSGAGFHVLKVLEKSQSGAPVYITQNHARHILLTVGEG 343

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
           M   +A++++++  +R+E   A   +  ++++               G          +P
Sbjct: 344 MTEAQAAKRLEDYKRRVE---AGQATFQQLAQEFS----KDGSARNGGDLGWSSPGQFVP 396

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKT 492
             E++L  +        +   ++ P  S   V + + I  R  KL   E    V+   + 
Sbjct: 397 EFERVLDSL--------QPGQISNPVVSRFGVHLIQLIERRQEKLTEREQREMVRNVVRE 448

Query: 493 VKTAEEVSSKANQL 506
            K  ++  +   +L
Sbjct: 449 RKAEQDYETWLKEL 462


>gi|221133455|ref|ZP_03559760.1| peptidyl-prolyl cis-trans isomerase C [Glaciecola sp. HTCC2999]
          Length = 92

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K+A +    +K+GK F +LA++     S      LG F +  +      D +F
Sbjct: 8   HILVKTEKQALDILAQIKQGKDFGKLAKQHSTCPSRKRGGDLGEFKRGQMVKQ-FDDVVF 66

Query: 331 SLAKKGDFTPVIHGSFGYVIAH 352
                      +   FGY +  
Sbjct: 67  KKPIL-TVHGPVKTKFGYHLIK 87


>gi|152983709|ref|YP_001346304.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa PA7]
 gi|150958867|gb|ABR80892.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa PA7]
          Length = 93

 Score = 66.9 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  ++ + +E   +++ G  F ++A +     S     +LGSF    +    
Sbjct: 2   ARATARHILVSSEAKCNELKTAIEGGADFAEIARQHSTCPSGRDGGNLGSFGPGQMV-RE 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS          +   FGY +  V++ +
Sbjct: 61  FDQVVFSAPLN-VVQGPVKTQFGYHLLEVTSRQ 92


>gi|320324321|gb|EFW80400.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328556|gb|EFW84558.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330885585|gb|EGH19734.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 93

 Score = 66.9 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  + ++  E    ++ G  F ++A+      S      LGSF    +    
Sbjct: 2   AKATARHILVSSAEKCKELKAQIEGGADFAEIAKANSSCPSSRQGGDLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A        +   FGY +  V++ +
Sbjct: 61  FDTVVFS-APVNTVQGPVKTQFGYHLLEVTSRQ 92


>gi|195391926|ref|XP_002054610.1| GJ22713 [Drosophila virilis]
 gi|194152696|gb|EDW68130.1| GJ22713 [Drosophila virilis]
          Length = 130

 Score = 66.9 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G+KF ++A    +  +     LG   +  +      D+
Sbjct: 38  KVRHILCEKQGKIMEALEKLKAGQKFPEVAAAYSEDKARQGGDLGWQIRGAMVGP-FQDA 96

Query: 329 IFSLAKKGDFT-----PVIHGSFGYVIAHVSNIK 357
            F+L      +     P I   FGY I  V   K
Sbjct: 97  AFALPISTVNSPVYTDPPIKTKFGYHIIMVEGKK 130


>gi|93140533|sp|Q4I665|PIN4_GIBZE RecName: Full=Peptidyl-prolyl cis-trans isomerase PIN4;
           Short=PPIase PIN4; AltName: Full=Parvulin-14;
           Short=Par14
          Length = 133

 Score = 66.9 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYI 320
           K    +   V  ++     + +EA   L  G KF ++A E  +  +    SLG  +K  +
Sbjct: 35  KAKGAQSINVRHILCEKHAKKEEALAKLNDGVKFDEVAREYSEDKARQGGSLGWKTKGSL 94

Query: 321 PDVSLADSIFSLAKKGDFTPVI---HGSFGYVIAHVSNIK 357
            D    +  F+L      +P        FGY I  V   K
Sbjct: 95  -DPKFEEVAFALETSTTNSPKFVEVKTGFGYHIIMVEGRK 133


>gi|294637926|ref|ZP_06716195.1| peptidylprolyl isomerase PrsA2 [Edwardsiella tarda ATCC 23685]
 gi|291088952|gb|EFE21513.1| peptidylprolyl isomerase PrsA2 [Edwardsiella tarda ATCC 23685]
          Length = 93

 Score = 66.9 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  +Q EA+   Q L++G  F  LA    +  S      LG F +  +       ++F
Sbjct: 9   HILVDSQTEAEALLQKLRRGANFQALARRHSRCPSKRQGGDLGEFRRGSMV-PEFDRAVF 67

Query: 331 S---LAKKGDFTPVIHGSFGYVIAHV 353
           S   L   G     +   FGY I  V
Sbjct: 68  SSPLLTPVG----PVKTRFGYHIIKV 89


>gi|258649206|ref|ZP_05736675.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella tannerae
           ATCC 51259]
 gi|260850471|gb|EEX70340.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella tannerae
           ATCC 51259]
          Length = 452

 Score = 66.9 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 88/257 (34%), Gaps = 46/257 (17%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK-----------YK------DN 223
             ++ Y     +D I ++   +   A   + ++ ++ +            +K      ++
Sbjct: 68  AIQKLYLHQAEIDSITVSEGDIIRAA---DEIINRYIQNIGSKEGVEAVMHKSISQLRED 124

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS--PEIRTVEQLVF---P 278
           ++  +  R+  I  +     +K+ I+  E++  ++          P    VE +     P
Sbjct: 125 FKRSQRDRMR-IQREQQRITEKVAITPAEVREYFKNLPADSLPLIPTQVEVEIITAQPQP 183

Query: 279 NQKEADEAFQSLKKGKK--------FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLA 326
            + E +     L+            F  LA    ++ G S +   +    +  +     A
Sbjct: 184 TRAEVERIENKLRSFADRVNSGETEFSTLARFYSQDPGSSRNGGEMDYMGRGQLV-PEFA 242

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-VKKDI------ANQMRITK 379
           +  FSL+     + ++   FGY I  + + +          +K DI        + ++  
Sbjct: 243 NVAFSLSDPKKVSKIVKTEFGYHIIQLVDKRGDKVKVRHILLKPDISSDEFARQEAKLDS 302

Query: 380 ASEKVKEDYKRLEEFLA 396
            +  ++E     E+  A
Sbjct: 303 IATLIREHKLSFEDAAA 319


>gi|59710895|ref|YP_203671.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Vibrio fischeri
           ES114]
 gi|75507097|sp|Q5E863|SURA_VIBF1 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|59478996|gb|AAW84783.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Vibrio fischeri
           ES114]
          Length = 437

 Score = 66.9 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 55/376 (14%), Positives = 119/376 (31%), Gaps = 81/376 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    V  S    S K  + + +Q+ G  +  E      L +++L+ L+     
Sbjct: 28  DRVVAIVDEGVVLQSDIDTSLKT-VKINAQEKGQPLPDEAV----LREQVLEKLIVDTIQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E +G+  D  R+   +        K+N  +      + A +G+    + +   K +
Sbjct: 83  SQQAEKMGIRIDDTRLEAALNDI----AKENNMTLAQLQQKTAAQGLPYANFREQIRKEI 138

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           + ++                          +    I +  + V ++A             
Sbjct: 139 AASEARNA----------------------QVRRRINILPQEVESLAQLLAEETQA---- 172

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                      +IS+I   V +   + +    E                           
Sbjct: 173 -------TVQYKISHIQLRVEDGATQADKEALE--------------------------- 198

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
            K+A++  + LK+G  F  +A       K+L     G   KE +P    AD I    K  
Sbjct: 199 -KQAEDLTERLKQGADFATMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQITGQGKNS 256

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD----IANQMRITKASEKVKEDYKRLE 392
                     G+ I  + ++K   TV+  EV         + +   + ++++      ++
Sbjct: 257 -IIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKTSVIMSDEGAQRLLNTI--ID 313

Query: 393 EFLALGTSMDEISRRE 408
           +  +   +  ++++R 
Sbjct: 314 DIKSGKETFADMAQRY 329


>gi|77459294|ref|YP_348801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens Pf0-1]
 gi|77383297|gb|ABA74810.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens Pf0-1]
          Length = 93

 Score = 66.9 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  ++ + +E    ++ G  F ++A+      S      LGSF    +    
Sbjct: 2   AKATARHILVSSEAKCNELKAQIEGGADFAEVAKANSTCPSSRQGGDLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS          +   FGY +  V++ +
Sbjct: 61  FDTVVFSAPIN-VVQGPVKTQFGYHLLEVTSRQ 92


>gi|168049559|ref|XP_001777230.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671458|gb|EDQ58010.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 144

 Score = 66.9 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA++ LK+G           +F +LA E  +  S      LG F +
Sbjct: 46  KARHILCEKQGKINEAYKKLKEGWLDSGDKVPPAEFAKLAAEYSECPSGKKGGDLGWFPR 105

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      +  F+    G  +     + GY I      K
Sbjct: 106 GKMAGP-FQEVAFN-TPPGVLSAPFKSTHGYHIILAEGRK 143


>gi|256822557|ref|YP_003146520.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
           DSM 16069]
 gi|256796096|gb|ACV26752.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
           DSM 16069]
          Length = 272

 Score = 66.9 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 18/173 (10%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----------ADEAFQSLKKGK 294
            E+S+++ Q  YE+N+ K+ +  I  V  ++     +           A++    L K  
Sbjct: 93  QEVSDEDCQRYYEQNQAKFMTAPIMEVSHILLAVAPDDIEGRIEKKTVAEKLISKLLKDS 152

Query: 295 K-FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F  +  E     S     SLG  SK           +F L + G +   I   +GY I
Sbjct: 153 SLFTDMVIEYSGCPSNKTGGSLGQISKGQTV-PEFERQLFPLDE-GIYDKPIESRYGYHI 210

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMD 402
             ++       + +  V + I + + + +  + V +   +L E+    G  + 
Sbjct: 211 VFINKKIDGNQLEYSMVSEKIHDYLNVRRHRQAVSDYLYQLVEDSTIEGLELK 263


>gi|227513558|ref|ZP_03943607.1| peptidylprolyl isomerase [Lactobacillus buchneri ATCC 11577]
 gi|227083431|gb|EEI18743.1| peptidylprolyl isomerase [Lactobacillus buchneri ATCC 11577]
          Length = 293

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 62/157 (39%), Gaps = 13/157 (8%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            I   L          + ++ +L+A+++  + K       TV Q++   +  A+   + L
Sbjct: 106 SIRSNLLLQQAVRDNTKFTDAQLKAQFKSYQPK------VTVNQILVSKKSTAETVIKQL 159

Query: 291 KKGKKFIQLAEEQGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           K GK F  LA++     +  + G       +     D +   + F L         +   
Sbjct: 160 KAGKSFSSLAKKYSTDTATKNKGGRISAFDNTNTSLDSNFKKAAFKLKNGDYTKTPVKTQ 219

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           +GY +  + N  P+   ++++ + ++  Q+   + ++
Sbjct: 220 YGYQVIQMVN-HPAKG-TYKDHESELKTQLVDKRLAD 254



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 58/187 (31%), Gaps = 36/187 (19%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           ++ +  ++        +  GS +V +    K+  S++ +S                    
Sbjct: 5   LIVLAGVLM---SFTLAACGSKSVATTNGGKITESAYYSS-------------------- 41

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
            +     K++L  ++    L+   +  G +     V  +  +   +  +        F +
Sbjct: 42  LKGTSSGKQVLQQMILNKVLE---KQYGKKVKESAVNKDFNK---YKKQYGS----SFNA 91

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L + G+   +  D     L             + ++  L    + Y    +V+ I+++ 
Sbjct: 92  VLQQNGMTASQLKDSIRSNLLLQQ---AVRDNTKFTDAQLKAQFKSYQPKVTVNQILVSK 148

Query: 200 RHVPAIA 206
           +      
Sbjct: 149 KSTAETV 155


>gi|73662267|ref|YP_301048.1| peptidyl-prolyl cis trans isomerase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72494782|dbj|BAE18103.1| peptidyl-prolyl cis trans isomerase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 330

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 61/150 (40%), Gaps = 15/150 (10%)

Query: 278 PNQKEADEAFQSLKKGKK-FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
             + +A++  + ++K    F ++A+    ++  +  D SLG   K  + D     ++F L
Sbjct: 165 EAKAKAEKIQKEVEKHPDKFGEIAKKESMDKASAKKDGSLGYVVKGQMED-KFEKALFKL 223

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS---EKVKEDYK 389
            K+G  + V+   +GY I             F + K  +  Q+  TK     + + + YK
Sbjct: 224 -KEGKVSDVVKTDYGYHIIKADKEN-----DFDKEKGKLKAQLIQTKIQKDPKLLTDAYK 277

Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            L +   +     +I +  +   +D   + 
Sbjct: 278 ELLDEYKVDYKDRDIKKAIEDSILDPEKIK 307


>gi|329297876|ref|ZP_08255212.1| peptidyl-prolyl cis-trans isomerase C [Plautia stali symbiont]
          Length = 82

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFS-- 331
              + +A      L+KG  F QLA++     S      LG F K  +   +   ++F+  
Sbjct: 1   MKQEAQAKALLAQLEKGANFQQLAKKHSTCPSGRNGGDLGEFRKGQMV-PTFDKAVFTCP 59

Query: 332 LAKKGDFTPVIHGSFGYVIAHV 353
           L +       +  +FGY I  V
Sbjct: 60  LLQP---YGPVKTAFGYHIIKV 78


>gi|326566313|gb|EGE16464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 12P80B1]
          Length = 367

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 100/331 (30%), Gaps = 65/331 (19%)

Query: 71  IGFVVNSERARSVGLDKKILD--NLVSG--ATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           +G   +  +     LDK+I D  NL++    TL     + G+  D   V  E+   P   
Sbjct: 77  LGRPSSDAQFIKQALDKEIFDSTNLIASSHQTLPNITVN-GVAIDPKAVAAEVQYHPA-- 133

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
              N     +F++                 + L R +V+                 +R +
Sbjct: 134 ---NSQEEALFLAA-----------QALVMRELLRQEVIECLG-------------ERAW 166

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            EN       L  + V A   P  A    ++   +  + +     + +IL     +E + 
Sbjct: 167 LENEEATIAKLLEQKVIAK-SPDKASCQNYYHANQVEFVSTPIMTLRHILLACPPQEGEE 225

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            I   EL+ +  +  ++      R                         FI+ A      
Sbjct: 226 RI---ELKKQARQLIDRLNQSHNRD----------------------SDFIEFARRYSAC 260

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG   K          ++F+L   G     I   +G  +  V   +    +S
Sbjct: 261 PSKDDGGELGVLQKGSTV-PEFESAVFALP-VGISINPIETRYGIHVIEVLQKQEGRQLS 318

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           F+E    I N ++       + +    L + 
Sbjct: 319 FEEAYPIIENHLKQQSFHHSLCDYLFELSQK 349


>gi|296282383|ref|ZP_06860381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Citromicrobium
           bathyomarinum JL354]
          Length = 492

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/371 (11%), Positives = 112/371 (30%), Gaps = 35/371 (9%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
              R  V+   +           Q      E  +  Y +L  ++  +     +  L    
Sbjct: 136 QALRMQVLRNLIDETLQIQAAAAQDMEVSSEEVNQRYAILAQQNFGSNPQQMDKFLIA-A 194

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
                  +      I++ +         I +S +E+    E+ K      E R  E  + 
Sbjct: 195 GSSPATLKRQIQGEIAWQMLLRRNVAPFINVSAEEVNDTIERLKTSRGQEEYRLAEIYLS 254

Query: 278 PN-------QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
                    +  A++    ++ G  F   A +  +S +      LG      +P      
Sbjct: 255 ATPETAATVEANAEQIMDQIRAGGSFQAYARQFSESTTASVGGDLGFVRLGTLPGQMAE- 313

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP-------SFTVSFQEVKKDIANQMRITKA 380
            + +    G     +    GYVI  + + +           +S +++           +A
Sbjct: 314 -VATKMTPGQLVGPVPIPGGYVIMLLLDKRQVLTADPRDAVLSLKQIAITFPQGTSQDRA 372

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
           + +V+E    +      G + + ++       +D   +           V  +P   QL 
Sbjct: 373 NARVEEFANAIGTIRGCGDA-NRVAESVGASVVDNDSIT----------VRDLP--PQLQ 419

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA--RDRKLEEVLTDVKKDWKTVKTAEE 498
             +       +     ++ DG  + +      P    +   ++++  ++++  + +    
Sbjct: 420 ASLMDLQVGQTTPPFGSMQDGVRVLLLCGRDDPEVNGEPDFDQIMDRIEEERISKRAQRF 479

Query: 499 VSSKANQLVLE 509
           +    +  ++E
Sbjct: 480 LRDLRDDAIIE 490


>gi|161522420|ref|YP_001585349.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans ATCC 17616]
 gi|189348704|ref|YP_001941900.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia multivorans
           ATCC 17616]
 gi|160345973|gb|ABX19057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans ATCC 17616]
 gi|189338842|dbj|BAG47910.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia multivorans
           ATCC 17616]
          Length = 262

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 18/171 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSL-KKGKKF 296
           E    + +  Y ++  ++   +I     ++F           ++ A+ A   +      F
Sbjct: 86  EPDRADCERYYAQHPARFRRNDIVYASHVLFAVTDRVPLAPLRQRAERALADVVAAPDTF 145

Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             +A        +    SLG   +          ++F     G    +++  FG+ I  +
Sbjct: 146 DAVARASSNCPSAQVGGSLGQVLRGDTV-PEFEAALFDTDGLGVLPKLVNTRFGFHIVRI 204

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
                  TV F  V   IA  +   +  ++    Y  +   LA G  ++ +
Sbjct: 205 DRRVAGDTVPFDAVAAQIAAHL-TARVRQRAMRQYVAI---LAGGARIEGV 251


>gi|95929247|ref|ZP_01311991.1| hypothetical protein Dace_1864 [Desulfuromonas acetoxidans DSM 684]
 gi|95134745|gb|EAT16400.1| hypothetical protein Dace_1864 [Desulfuromonas acetoxidans DSM 684]
          Length = 539

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 72/201 (35%), Gaps = 15/201 (7%)

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPE---YKRISYILFDVHEKEKKIEISNDELQA 255
              + A +  S   L + +E  K  +++      +       +        ++S++EL  
Sbjct: 326 ANDIVAQSLTSMEALNRHYES-KPPFQSVYFFYQRHRLIRELESKLILPYTQVSDEELSH 384

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
            Y +++E Y  P       +   N+K A +  + L++G  F Q       +LS +S    
Sbjct: 385 YYNEHREDYAYPVRVRYASVETRNEKMALKLREDLRQGADFYQ-------TLSPLSPAGI 437

Query: 316 SKEYIPDVSL---ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
             +  P   L      +    + G  + ++     +    +          F +++  + 
Sbjct: 438 ETKTTPLAHLIPEMQDLIDRLQPGQ-SDMLEVDGYFHFIRLIEEPKVDYKPFDQIRDALK 496

Query: 373 NQMRITKASEKVKEDYKRLEE 393
            Q+   K S++  E   +L +
Sbjct: 497 AQLTQAKFSQRRAELVAQLRQ 517



 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/478 (10%), Positives = 144/478 (30%), Gaps = 54/478 (11%)

Query: 198 NNRHVPAIADPSNAVLT-QWFEKYKDNYRAPEYKRI-SYILFDVHEKEKKIEISNDELQA 255
           +          S+     Q +++ +   +   + ++ S ++    E ++KI +S++E+  
Sbjct: 63  SPDDFIDWILLSDEAEQMQLYDEPRFKQKVHTFLKVRSLMMLKNEEVDEKISVSDEEIDR 122

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS- 314
            Y ++           +  +   ++++     Q++ +G    ++  +    L    L   
Sbjct: 123 IYHRDYTPLL-----KLRSIELDSEEQCAAFMQAVSQGLSSDEVLADPLLQLPQTGLSEP 177

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
             +          +++    +  + P       + I  +    P        V + I+  
Sbjct: 178 IVQRPNQLPPHVRTLYEQDPQTRYLPAYSYQDRWFILEIMQRDPGNDNDRANVAESISYT 237

Query: 375 MRITKASEKVKEDYKRLEEF------------LALGTSMDEISRREKIVSIDLPLVDFAG 422
           +R  K  E   +   RL E             +      ++++    I   D  +     
Sbjct: 238 LRKDKQRELTGQLNMRLMEKYQVKMDEQGMKRIHEDGPEEDVAEAAMITFPDFTITGQIL 297

Query: 423 ----------------KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
                           KD   +E+      + +   +   +       +       Y + 
Sbjct: 298 YKNALSHYQRFGGKEMKDTSFEEIVQRVANDIVAQSLTSMEALNRHYESKPPFQSVYFFY 357

Query: 467 Q----IKESIPARDRKLEEVLTDVKKDWKTVKTAEEV----------SSKANQLVLEYSK 512
           Q    I+E          +V  +    +      +             ++  ++ L+  +
Sbjct: 358 QRHRLIRELESKLILPYTQVSDEELSHYYNEHREDYAYPVRVRYASVETRNEKMALKLRE 417

Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572
           + +   D  + L    L+   I            +    +            ++    ++
Sbjct: 418 DLRQGADFYQTLSP--LSPAGIETKTTPLAHLIPEMQDLIDRLQPGQSDMLEVDGYFHFI 475

Query: 573 -VFKVTNSKVGPVQE-KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
            + +       P  + +D   + LTQ         ++A L+ + ++TV+ N  QR L+
Sbjct: 476 RLIEEPKVDYKPFDQIRDALKAQLTQAKFSQRRAELVAQLRQRTTITVNQNQWQRCLN 533


>gi|71734009|ref|YP_274529.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554562|gb|AAZ33773.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 93

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  + ++ +E    ++ G  F ++A+      S      LGSF    +    
Sbjct: 2   AKATARHILVSSAEKCNELKAQIEGGADFAEIAKANSSCPSSRQGGDLGSFGPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS A        +   FGY +  V++ +
Sbjct: 61  FDTVVFS-APVNTVQGPVKTQFGYHLLEVTSRQ 92


>gi|150011009|gb|ABR57161.1| foldase protein precursor [Staphylococcus xylosus]
          Length = 329

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 81/215 (37%), Gaps = 44/215 (20%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--------- 278
           E K++            K++IS+ E++             + +    ++           
Sbjct: 114 EQKKLQAY--QKELLNDKVDISDKEIKK------------DTKKGSHILIKVKENKDDKE 159

Query: 279 --NQKEADEAFQSLKK-----GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLAD 327
             + K+A    + ++K       KF ++A+++    S    D SLG   K  + D     
Sbjct: 160 GLSDKDAKAKAEKIQKQVEKDPDKFGEIAKKESMDKSSGKKDGSLGYVIKGQMED-KFEK 218

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK---V 384
           ++F L K+G+ + V+   +GY I             F + K  + +Q+  +K  ++   +
Sbjct: 219 ALFKL-KEGNISDVVKTDYGYHIIK-----ADKQDDFDKEKGKLKSQLIQSKVQKEPKLL 272

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            + YK L +   +     +I +  +   +D   + 
Sbjct: 273 TDAYKELLDEYKVDYKDRDIKKAIEDSILDPEKIK 307


>gi|330883238|gb|EGH17387.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 192

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/156 (10%), Positives = 61/156 (39%), Gaps = 18/156 (11%)

Query: 268 EIRTVEQLVFP---------NQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGS 314
           +   V  ++            ++ A++ +  ++ G+ F +LA+    + G +L+   L  
Sbjct: 41  DEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQNGEDFAELAKSFSEDPGSALNGGDLNW 100

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA-N 373
                +        + +   +G+ +     ++G+ +  V   + +      + ++  A N
Sbjct: 101 VDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYGWHVLEVLGRRSTDAT--DQAREQQALN 156

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
            +R  K  E+++   +++ +   +   +   ++  +
Sbjct: 157 VLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQAAQ 192



 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS--FQEVK--------KDIANQMRITK 379
            S    GD TP      G++I  +   +     +    EV          +I N+    +
Sbjct: 4   LSAMPVGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKR 63

Query: 380 ASEKVKEDYKRLEEFLALGTSMDE 403
            +EK+ +  +  E+F  L  S  E
Sbjct: 64  LAEKIYDRIQNGEDFAELAKSFSE 87


>gi|292486653|ref|YP_003529523.1| peptidyl-prolyl cis-trans isomerase C [Erwinia amylovora CFBP1430]
 gi|292897890|ref|YP_003537259.1| peptidyl-prolyl cis-trans isomerase C [Erwinia amylovora ATCC
           49946]
 gi|291197738|emb|CBJ44833.1| peptidyl-prolyl cis-trans isomerase C [Erwinia amylovora ATCC
           49946]
 gi|291552070|emb|CBA19107.1| peptidyl-prolyl cis-trans isomerase C [Erwinia amylovora CFBP1430]
 gi|312170719|emb|CBX78981.1| peptidyl-prolyl cis-trans isomerase C [Erwinia amylovora ATCC
           BAA-2158]
          Length = 93

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + L++G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQLRQGADFEKLAKKHSTCPSGKKGGHLGEFKQGAMV-PAFDKVVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L +       +H  FGY I  V
Sbjct: 68  SCPLIEPQ---GPLHTQFGYHIIKV 89


>gi|240849525|ref|NP_001155773.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           [Acyrthosiphon pisum]
 gi|239789189|dbj|BAH71234.1| ACYPI008778 [Acyrthosiphon pisum]
          Length = 126

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G KF ++A    +  +     LG   +  +      D+
Sbjct: 34  KVRHILCEKQSKVLEAMEKLKAGVKFNEVATLYSEDKARQGGDLGWMIRGSMVGP-FQDA 92

Query: 329 IFSLAKKGDFTPVI-----HGSFGYVIAHVSNIK 357
            F+L+     +PV         FGY I  +   K
Sbjct: 93  AFALSVSSLASPVYTDPPVKTKFGYHIIMIEGKK 126


>gi|224368980|ref|YP_002603144.1| PpiC1 [Desulfobacterium autotrophicum HRM2]
 gi|223691697|gb|ACN14980.1| PpiC1 [Desulfobacterium autotrophicum HRM2]
          Length = 93

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++   +    +    +  G  F +LA++  K  S      LG F    +        
Sbjct: 6   ARHILVDTEAMCQDLIDQINNGTDFAELAKKHSKCPSGRQGGDLGEFGPGQMV-PEFDKV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +F+ A  G     +  +FG+ +  +++   
Sbjct: 65  VFNEA-VGKPHGPVKTTFGFHVVEITSRTE 93


>gi|75773864|gb|AAI04654.1| PIN4 protein [Homo sapiens]
          Length = 141

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 49  KVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 107

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 108 AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 141


>gi|197123566|ref|YP_002135517.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
 gi|196173415|gb|ACG74388.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
          Length = 590

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 66/168 (39%), Gaps = 4/168 (2%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            + +  F        + + +D+L+A Y+ +++++ +  +  ++QL FP+ K A  A + L
Sbjct: 411 SLVFGTFVQRVLVPDVSLKDDDLRAYYDGHRDEFTAAPLYRLDQLAFPDMKGAQRATERL 470

Query: 291 KKGKKFIQL-AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP--VIHGSFG 347
            +G  F  L A  +G+         F  + +    L + +             +  G  G
Sbjct: 471 ARGTDFKWLKANAEGQLPPAQRALDFEGQLLSAKGLPEDLAGALASAQVGDYRLHQGPRG 530

Query: 348 Y-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
              +  V +        F+E K DI  ++     +  V +   +L + 
Sbjct: 531 QGYVVQVVSRTDPQVQPFEEAKPDIQKKLFGQALNRAVTDWAAKLRDA 578



 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 142/436 (32%), Gaps = 68/436 (15%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  + ++    E++  Y+++  ++       V  L+F  +++A     +L  GK F++L
Sbjct: 157 QQVTQDVKPDALEVERVYKESVRRW------KVRSLLFQKEEDAAAVKPALAGGKGFVEL 210

Query: 300 AEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A++   + K+           +    + +  +     +KG  TP +    G+ I +V +I
Sbjct: 211 AKQLVAEKKAEGSGEPEVLPPDQT--LPVVTTALQRLQKGQATPPLKLQKGFAILYVEDI 268

Query: 357 K----PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK-IV 411
                P+     ++   D  +   +T   +++   Y +++E L    + D        +V
Sbjct: 269 VYPDDPAKRAEAEKASVDRQSGQVLTAFRKELDRKYVKIDEALLRKINFDAPKPGFAVLV 328

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
               P+V  AG+        A    E+    V         D          ++ ++   
Sbjct: 329 KDKRPIVRIAGEAPITVADLANAVGEKFFHGVEKPQQEKRVDKLKRPRLDGLIYKRVFT- 387

Query: 472 IPARDRKLEEVLTDVKK---------------------------DWKT-------VKTAE 497
             AR RKL++    ++                            D +          TA 
Sbjct: 388 KEARVRKLDQSEEYLRAVEEYENSLVFGTFVQRVLVPDVSLKDDDLRAYYDGHRDEFTAA 447

Query: 498 EV---------SSKANQLVLEYSKEGKNFRDIGKNLGASL---LTTNQINRMDNENKFFG 545
            +           K  Q   E    G +F+ +  N    L                K   
Sbjct: 448 PLYRLDQLAFPDMKGAQRATERLARGTDFKWLKANAEGQLPPAQRALDFEGQLLSAKGLP 507

Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKV--TNSKVGPVQEKDKFISY--LTQMMNKD 601
            D    + S  V   +      G  YVV  V  T+ +V P +E    I      Q +N+ 
Sbjct: 508 EDLAGALASAQVGDYRLHQGPRGQGYVVQVVSRTDPQVQPFEEAKPDIQKKLFGQALNRA 567

Query: 602 LLDSVIAYLKSQYSVT 617
           + D   A L+  + + 
Sbjct: 568 VTD-WAAKLRDAHRIE 582


>gi|71277915|ref|YP_270304.1| peptidyl-prolyl cis-trans isomerase C [Colwellia psychrerythraea
           34H]
 gi|71143655|gb|AAZ24128.1| peptidyl-prolyl cis-trans isomerase C [Colwellia psychrerythraea
           34H]
          Length = 92

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSL 325
             +   L+   +++       ++ GK F ++A+E      +     LGSF    +     
Sbjct: 3   QASARHLLVDTEEKCLALKAEIEAGKDFAEVAKEHSNCPSNAQGGDLGSFGPGQMV-PEF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
              +FS          +   FGY +  V+   
Sbjct: 62  DKVVFSAPLN-TVQGPVQTQFGYHLLEVTARN 92


>gi|260591263|ref|ZP_05856721.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella
           veroralis F0319]
 gi|260537128|gb|EEX19745.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella
           veroralis F0319]
          Length = 478

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 60/181 (33%), Gaps = 25/181 (13%)

Query: 240 HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEA----------F 287
            +    +++S  E++  + K         P    VE L    + E +E            
Sbjct: 169 AKLVGDVKVSPAEVREYFRKLPVDSIPMIPTTVEVEILTQTPKVEPEEVNRIKNQLRDYT 228

Query: 288 QSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             + KG+  F  LA    E+ G S     LG   +  + D + A   F+L      + ++
Sbjct: 229 DRVTKGETSFATLARLYSEDPGSSRQGGELGYMGRGML-DPAFAAVAFNLTDPKKVSKIV 287

Query: 343 HGSFGYVIAHVSNIKPSFT-------VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
              FGY I  + + +                +      + R+      ++++    E+  
Sbjct: 288 ESEFGYHIIQLIDRRGDKINCRHILLKPRVSMASIDTAKERLDSIGRDLRKEKFTFEDAT 347

Query: 396 A 396
           A
Sbjct: 348 A 348


>gi|197249971|ref|YP_002148838.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197213674|gb|ACH51071.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 93

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           S     + T  +H  FGY I  V   K
Sbjct: 68  SCPVL-EPTGPLHTQFGYHIIKVLYRK 93


>gi|16762221|ref|NP_457838.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16767186|ref|NP_462801.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143710|ref|NP_807052.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56415769|ref|YP_152844.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62182385|ref|YP_218802.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161617027|ref|YP_001590992.1| hypothetical protein SPAB_04855 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553321|ref|ZP_02347071.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994605|ref|ZP_02575696.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234229|ref|ZP_02659287.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238365|ref|ZP_02663423.1| peptidyl-prolyl cis-trans isomerase C (PPIase C) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168244961|ref|ZP_02669893.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168263199|ref|ZP_02685172.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168822964|ref|ZP_02834964.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194446230|ref|YP_002043149.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451515|ref|YP_002047932.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470361|ref|ZP_03076345.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194735487|ref|YP_002116844.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197264763|ref|ZP_03164837.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364698|ref|YP_002144335.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198245194|ref|YP_002217849.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200388005|ref|ZP_03214617.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204930319|ref|ZP_03221296.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354518|ref|YP_002228319.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859123|ref|YP_002245774.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213027842|ref|ZP_03342289.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213051681|ref|ZP_03344559.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213421551|ref|ZP_03354617.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425874|ref|ZP_03358624.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213581335|ref|ZP_03363161.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213609769|ref|ZP_03369595.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213648396|ref|ZP_03378449.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213864702|ref|ZP_03386821.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224585732|ref|YP_002639531.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912918|ref|ZP_04656755.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289825744|ref|ZP_06544912.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|61229953|sp|P0A265|PPIC_SALTY RecName: Full=Peptidyl-prolyl cis-trans isomerase C; Short=PPIase
           C; AltName: Full=Parvulin; AltName: Full=Rotamase C
 gi|61229954|sp|P0A266|PPIC_SALTI RecName: Full=Peptidyl-prolyl cis-trans isomerase C; Short=PPIase
           C; AltName: Full=Parvulin; AltName: Full=Rotamase C
 gi|25512550|pir||AE0923 peptidyl-prolyl cis-trans isomerase C [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|6960285|gb|AAF33475.1| 95% identity with E. coli peptidyl-prolyl cis-trans isomerase C
           (PPIC) (SPP39159); contains similarity to Pfam family
           PF00639 (PPIC-type PPIASE domain), score=155.9,
           E=6.8e-43, N=1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16422478|gb|AAL22760.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16504525|emb|CAD09407.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139345|gb|AAO70912.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56130026|gb|AAV79532.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62130018|gb|AAX67721.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161366391|gb|ABX70159.1| hypothetical protein SPAB_04855 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404893|gb|ACF65115.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409819|gb|ACF70038.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456725|gb|EDX45564.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710989|gb|ACF90210.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197096175|emb|CAR61771.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197243018|gb|EDY25638.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288728|gb|EDY28103.1| peptidyl-prolyl cis-trans isomerase C (PPIase C) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197939710|gb|ACH77043.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605103|gb|EDZ03648.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320723|gb|EDZ05925.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274299|emb|CAR39321.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205322213|gb|EDZ10052.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327563|gb|EDZ14327.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331808|gb|EDZ18572.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336238|gb|EDZ23002.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340710|gb|EDZ27474.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348090|gb|EDZ34721.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710926|emb|CAR35291.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470260|gb|ACN48090.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261249040|emb|CBG26898.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996191|gb|ACY91076.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160432|emb|CBW19959.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915033|dbj|BAJ39007.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088327|emb|CBY98087.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225436|gb|EFX50493.1| Peptidyl-prolyl cis-trans isomerase ppiC [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322612992|gb|EFY09943.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617420|gb|EFY14320.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625588|gb|EFY22410.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627011|gb|EFY23804.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631273|gb|EFY28036.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638306|gb|EFY35005.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642844|gb|EFY39430.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647000|gb|EFY43502.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650388|gb|EFY46801.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656322|gb|EFY52616.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657547|gb|EFY53817.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665958|gb|EFY62139.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666697|gb|EFY62874.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671060|gb|EFY67190.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679233|gb|EFY75285.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681637|gb|EFY77664.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686036|gb|EFY82024.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716878|gb|EFZ08449.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323132263|gb|ADX19693.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192662|gb|EFZ77890.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197831|gb|EFZ82962.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203720|gb|EFZ88741.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205405|gb|EFZ90379.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210776|gb|EFZ95652.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215942|gb|EGA00675.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221435|gb|EGA05853.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227335|gb|EGA11502.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231732|gb|EGA15843.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236147|gb|EGA20224.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239616|gb|EGA23664.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244288|gb|EGA28296.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249615|gb|EGA33527.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250293|gb|EGA34179.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256500|gb|EGA40231.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259802|gb|EGA43435.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265210|gb|EGA48708.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268361|gb|EGA51833.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326625636|gb|EGE31981.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629653|gb|EGE35996.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332990751|gb|AEF09734.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 93

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           S     + T  +H  FGY I  V   K
Sbjct: 68  SCPVL-EPTGPLHTQFGYHIIKVLYRK 93


>gi|310766107|gb|ADP11057.1| Peptidyl-prolyl cis-trans isomerase C [Erwinia sp. Ejp617]
          Length = 93

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + LK+G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLAFDLLEQLKQGADFEKLAKKHSTCPSGKKGGHLGEFKQGAMV-PAFDKVVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           S  L +       +H  FGY I  V
Sbjct: 68  SCPLIEPQ---GPLHTQFGYHIIKV 89


>gi|260596006|ref|YP_003208577.1| peptidyl-prolyl cis-trans isomerase C [Cronobacter turicensis
           z3032]
 gi|260215183|emb|CBA27011.1| Peptidyl-prolyl cis-trans isomerase C [Cronobacter turicensis
           z3032]
          Length = 129

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 45  HILVKEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMV-PAFDKVVF 103

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 104 SCPVL-EPTGPLHTQFGYHIIKV 125


>gi|156935892|ref|YP_001439808.1| hypothetical protein ESA_03780 [Cronobacter sakazakii ATCC BAA-894]
 gi|161505574|ref|YP_001572686.1| hypothetical protein SARI_03744 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|311281540|ref|YP_003943771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae
           SCF1]
 gi|156534146|gb|ABU78972.1| hypothetical protein ESA_03780 [Cronobacter sakazakii ATCC BAA-894]
 gi|160866921|gb|ABX23544.1| hypothetical protein SARI_03744 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|308750735|gb|ADO50487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae
           SCF1]
          Length = 93

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 68  SCPVL-EPTGPLHTQFGYHIIKV 89


>gi|294341087|emb|CAZ89484.1| putative peptidyl-prolyl cis-trans isomerase [Thiomonas sp. 3As]
          Length = 226

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 51/155 (32%), Gaps = 14/155 (9%)

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQ----------KEADEAFQSLKKGKKFIQLA 300
            E +  Y ++ +     ++   + ++F             K  D  +  +     F ++A
Sbjct: 53  AECERYYAQHADALRQGDMVEADHILFAVTPSTPIDALRHKAEDTLYALMADSSGFAEMA 112

Query: 301 EEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                   +    +LG  + +         +    A+ G    ++   FG  I  ++ I 
Sbjct: 113 RGLSNCPSAQIGGNLGQLTADQCV-PEFWQAFMEHAEPGVLPRLVRTRFGLHIVRIARIA 171

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                 F+ V+  IA  +R       ++   + LE
Sbjct: 172 RGQLPPFEAVQAQIAQTLRQQSLVRALQLYAEDLE 206


>gi|294141729|ref|YP_003557707.1| peptidyl-prolyl cis-trans isomerase C [Shewanella violacea DSS12]
 gi|293328198|dbj|BAJ02929.1| peptidyl-prolyl cis-trans isomerase C [Shewanella violacea DSS12]
          Length = 92

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSL 325
             T   L+  ++++ +   Q +  G  F  +A+       S     LGSF    +     
Sbjct: 3   QATARHLLVSSEEKCEALKQEILGGADFGDVAKANSSCPSSAQGGDLGSFGPGMMVK-EF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            + +F+     +    +   FGY +  V++ 
Sbjct: 62  DEVVFNAPLN-EVQGPVKTQFGYHLLEVTSR 91


>gi|156370357|ref|XP_001628437.1| predicted protein [Nematostella vectensis]
 gi|156215413|gb|EDO36374.1| predicted protein [Nematostella vectensis]
          Length = 108

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +A EA + LK G+KF ++A    +  +     LG  ++  +      ++
Sbjct: 16  KVRHILCEKHSKAMEAMEKLKAGQKFNEVATAYSEDKARQGGDLGWMTRGSMVGP-FQEA 74

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F L            P +   FGY I  V   K
Sbjct: 75  AFELQTSTVDRPVYTDPPVKTKFGYHIIMVEGKK 108


>gi|224476899|ref|YP_002634505.1| putative foldase protein prsA 1 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421506|emb|CAL28320.1| putative foldase protein prsA 1 [Precursor] [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 330

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 60/174 (34%), Gaps = 39/174 (22%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------------NQKEADEA 286
              K+++S+ EL+             + +    ++                  +K+A+E 
Sbjct: 126 LMDKVKVSDKELKD------------DTKKASHILIKVKSDDKDKEGLSDKEAKKKAEEI 173

Query: 287 FQSLKKGKK-FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
            + ++K    F ++A+    ++  +  D SLG   K  +        +F L K    + V
Sbjct: 174 HKEVEKNPDKFGEIAKKESMDKASAKKDGSLGYVIKGQMVKP-FDKELFKL-KDSQISDV 231

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           +   +GY I             F   +  + +Q+   K  +  +      ++ L
Sbjct: 232 VKTDYGYHIIK-----ADKPTDFSSERSKLKSQIIQNKVQKDPQILVDAYKDLL 280


>gi|157804053|ref|YP_001492602.1| hypothetical protein A1E_04460 [Rickettsia canadensis str. McKiel]
 gi|157785316|gb|ABV73817.1| hypothetical protein A1E_04460 [Rickettsia canadensis str. McKiel]
          Length = 295

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 60/176 (34%), Gaps = 16/176 (9%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            K  L+++ + F        +   S  + V SV  + +  + F+   K  +      +  
Sbjct: 1   MKKLLLIIGIVFTF-----NVAQASRPNIVASVNDEPITLNEFLARKKMIIA-----LNN 50

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
           V +   A+   L    + +L+  + L Q+  D   E     +   I          NK  
Sbjct: 51  VESLTPAQDKQLSDLAIKSLIDESLLFQYAGDR--EITQEEIDNAIKSIE----DRNKMP 104

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           H   +  L    +N   +I      L + +++      ++ SN  +D A     + 
Sbjct: 105 HGSLLQYLKSRSVNPGSFIAQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQK 160


>gi|163751092|ref|ZP_02158322.1| peptidyl-prolyl cis-trans isomerase C [Shewanella benthica KT99]
 gi|161329048|gb|EDQ00120.1| peptidyl-prolyl cis-trans isomerase C [Shewanella benthica KT99]
          Length = 92

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSL 325
             T   L+  ++++ +   Q +  G  F  +A+       S     LGSF    +     
Sbjct: 3   QATARHLLVSSEEKCEALKQEILGGADFADVAKANSSCPSSAQGGDLGSFGPGMMVKE-- 60

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            D++   A   +    +   FGY +  V++ 
Sbjct: 61  FDAVVFHAPLNEVQGPVKTQFGYHLLEVTSR 91


>gi|163846602|ref|YP_001634646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222524398|ref|YP_002568869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
           Y-400-fl]
 gi|163667891|gb|ABY34257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222448277|gb|ACM52543.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
           Y-400-fl]
          Length = 490

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/398 (11%), Positives = 106/398 (26%), Gaps = 60/398 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMI------------------SQKIGFVVNSER-- 79
           S  V  VG   +  S +    +                         Q  G  +  ++  
Sbjct: 38  SRPVAQVGSVTLTRSDYWREQRIAYARQIIQNFQLLDLFGNNPQIAQQFQGRSIVIDQQI 97

Query: 80  --ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
              R   +D++++   +      +   + G+  +   V   I     F            
Sbjct: 98  RALRRAEVDQQVVSEWIDRQIKQRAAGEFGITINDDEVIQNIVADLGFIFIPPLPEP--- 154

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
            +      +  +  +D                           +         + +   L
Sbjct: 155 -TPTPDSNVTPEPTVDPAATATPE---PTATPSPTPGGPTPTPEPSPTPVPTFTPEPTPL 210

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                       + V  ++  +     R PE  +  +    + +  +++     + +   
Sbjct: 211 PAEARVQFDQIIDEVFRRYELELIVTERQPELSKDEFRQALLDQYRERLLNEQIQARLVP 270

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEAD------------------EAFQSLKKGKKFIQL 299
           E         E  +  Q++      A+                  E    L+ G  F  L
Sbjct: 271 EDGFTYKTEAERVSARQILVAVTPPAEATPEQIEAAFAAALPAAQEIVAQLRNGADFATL 330

Query: 300 AEEQGKSLS----DISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYV 349
           A E+   +        +GSF +    D        L  + FSL      +  I   FG+ 
Sbjct: 331 AAERSDDIGSRENGGDIGSFDRNGFADNGATYPPELVAAAFSLP-VNQVSDPIRTQFGWH 389

Query: 350 IAHVSN-IKPSFTVSFQEVKKDIANQ-MRITKASEKVK 385
           I  +++   PS      + + +  ++ +   +A+  V+
Sbjct: 390 ILEITDQTIPSQEEQLSQARTEAFDRWIAEQRAAADVR 427


>gi|38679892|ref|NP_006214.2| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 isoform 1
           [Homo sapiens]
          Length = 156

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 64  KVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 122

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 123 AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 156


>gi|222055935|ref|YP_002538297.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
 gi|221565224|gb|ACM21196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
          Length = 92

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++   ++E  +    ++ G  F + A+      S      LG+F++  +        
Sbjct: 6   ARHILVDTEEECLKLKTEIENGADFAETAKLNSACPSRMRGGDLGTFAQGQMV-PEFDQV 64

Query: 329 IFS--LAKKGDFTPVIHGSFGYVIAHVSNI 356
           +FS  L K       +   FGY +  ++  
Sbjct: 65  VFSGDLNK---VLGPVKTDFGYHLIEITKR 91


>gi|86160748|ref|YP_467533.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85777259|gb|ABC84096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 356

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/380 (14%), Positives = 106/380 (27%), Gaps = 110/380 (28%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           S      V +     +          ++   I  +           ++   K+ LDNLV 
Sbjct: 25  SKKSGPAVATGNGFTITAGELKARLDEQSPFIRARY---------STLERKKEFLDNLVR 75

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L +  E  GL           A  P                                
Sbjct: 76  FEVLAREAERQGL-----------ANDPEVQLT--------------------------L 98

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            K++ +  V   F      +   L +A                              L +
Sbjct: 99  KKVMVQKLVQKNFQDASGAAAEALPEA-----------------------------DLQK 129

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +++++K  Y  P   R++ I+++                           SPE       
Sbjct: 130 YYDEHKAEYYRPRRVRLAAIVWNAPA-----------------------GSPERAAKV-- 164

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDV---SLADS 328
               +  A    +  K    F QL  E  +  +       LG  ++E +        AD 
Sbjct: 165 ALAKKALAKLKAEEKKNTLAFAQLVNEFSEDAASKATAGDLGFKTREDLEKAYSKEFADV 224

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
            ++L + G  + V+    G  +   +  +     +F++VK  I  ++   K +++     
Sbjct: 225 AYNL-QPGATSGVLETPNGVYLVKGTGEQDELNRTFEQVKPQIQTKLYREKKTKEFDAWL 283

Query: 389 KRLEEFLALGTSMDEISRRE 408
           K+L +      S+DE +   
Sbjct: 284 KKLRDDAK--VSIDEKALEA 301


>gi|45945695|gb|AAH05234.2| PIN4 protein [Homo sapiens]
 gi|47683021|gb|AAH70288.1| PIN4 protein [Homo sapiens]
          Length = 140

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 48  KVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 106

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 107 AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 140


>gi|150025239|ref|YP_001296065.1| peptidyl-prolyl cis-trans isomerase precursor [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771780|emb|CAL43254.1| Peptidyl-prolyl cis-trans isomerase precursor [Flavobacterium
           psychrophilum JIP02/86]
          Length = 459

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 19/170 (11%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFS 266
           + V+  + +  + ++R   +  I         ++K ++   I+ +E++  ++   +    
Sbjct: 121 DKVIQYFKKSNEQDFRTELFDIIKINKLTAEMQKKVVDAVIITPEEVRNFFKAIPKADLP 180

Query: 267 --PEIRTVEQLVFP---NQKEADEAFQSLKK-------GKKFIQLAEEQGKSLSDISLGS 314
                  V Q+V     +Q+   +    LK        G  F   A    +     S G 
Sbjct: 181 VFGAEMEVAQIVVKPTVSQEAKQKVIDQLKAIKKEVQEGSSFFGKAVLYSEDKGSSSNGG 240

Query: 315 ---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                +         D  F L K+G+ +      FGY I ++  I+    
Sbjct: 241 YYKMDRRTQFVKEFKDVAFGL-KEGEISEPFLTDFGYHIIYLEKIRGQEV 289


>gi|315657935|ref|ZP_07910809.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus lugdunensis
           M23590]
 gi|315496971|gb|EFU85292.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus lugdunensis
           M23590]
          Length = 322

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 15/162 (9%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK---EADEAFQSLKKGKK-FI 297
              KI++S+ +++   +K        + +  ++    ++K   +A+E  + ++K    F 
Sbjct: 126 LADKIKVSDKDVKDNSKKASHILIKVKSKDSDKEGLSDKKAKEKAEEIQKQVEKDPSKFG 185

Query: 298 QLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           ++A+++    S    D SLG   K  I D     ++F L K+G  + VI   +GY I   
Sbjct: 186 EIAKKESMDSSSAKKDGSLGYVIKGQIVD-EFEKALFDL-KEGKVSKVIKTDYGYHIIK- 242

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
                     F   K +I  +M   K  +  K      ++ L
Sbjct: 243 ----ADKESDFNSEKANIKEKMIEQKVQKNPKLLTDAYKDLL 280


>gi|260777432|ref|ZP_05886326.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260607098|gb|EEX33372.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 92

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++  + LKKG KF  LA++     S      LG F K  +         F
Sbjct: 9   HILVKHKEQAEDIIKQLKKGAKFQTLAKKYSTCPSGKKGGDLGEFRKGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GETLVPHLVKTKFGWHVVKV 88


>gi|171464151|ref|YP_001798264.1| SurA domain [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171193689|gb|ACB44650.1| SurA domain [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 482

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/398 (10%), Positives = 105/398 (26%), Gaps = 88/398 (22%)

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL----------FH 126
           ++      L K ILD L+      Q  E  G+   +  +   I                 
Sbjct: 74  AKLPEDGTLRKAILDRLILEKIQLQNAEQEGIRVTNKELDKYIGDIAAKNKLSLAELKAK 133

Query: 127 GKDNKFSHDVFVSRLARE----GINEKEYIDHYT-------------------------- 156
                 S + +   L          E+E                                
Sbjct: 134 INAYGTSFERYRQMLRDNIMVSRYREREVEAKVKITDAEIDNFIIERTRGAAPTGVQRSA 193

Query: 157 -------KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIVLNNRHVPAIADP 208
                  + +    +      G         +A     + R  VD+I L           
Sbjct: 194 PAAKGEPEEIDVAQIFIPVDAGAGVQVKAKKKADALLRDARGDVDFIQLGAMAAKENPKI 253

Query: 209 SNAVL---------TQWFEKYKDNY---------RAPEYKRISYILFDVHEKE--KKIEI 248
               L           ++E  ++           ++     +  +L            ++
Sbjct: 254 KFQELGYRTPDRLPQLFYEAVRNTGSGQVANAVVKSSAGYHVLKVLDRRAVGASPPPQQV 313

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--EADEAFQSL--------KKGKKFIQ 298
           +  +      +N     +        ++  ++      +A + L         +   F +
Sbjct: 314 AAPDAGQAVPQNIPIIQT----LSRHILLRSRAGLTDQDAERRLQGYRDQVRARTADFAE 369

Query: 299 LAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           LA++    G + +   LG      +       ++  L + G+ +  +   FG+ +  V +
Sbjct: 370 LAKKYSEDGSAANGGDLGWMGPGDLV-PEFEQAMNRL-QIGEVSNPVKIEFGWHLIQVID 427

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            +    ++ ++ ++     +R  K  +  +E  + L +
Sbjct: 428 RREGQ-LTVEKQRQFARAAIRERKLDQAYQEWVRELHD 464


>gi|219847928|ref|YP_002462361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aggregans DSM 9485]
 gi|219542187|gb|ACL23925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aggregans DSM 9485]
          Length = 302

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 52/159 (32%), Gaps = 10/159 (6%)

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSK 317
            +    ++     ++  ++  A      L+ G  F  LA  + +      +   LG  ++
Sbjct: 145 ARNTRADMAHARHILVDDEASAQAILADLQGGANFATLAATRSRDTASAANGGDLGWATR 204

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
                 +  ++IF+L        ++   FG+ +  V   +      F   ++    Q   
Sbjct: 205 GDFV-PAFEEAIFTLPLN--TPQIVKTDFGFHVVEVLERE--LQRPFDTFEQLRVRQNAG 259

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
               E     Y+ L     L   +  I+      ++ +P
Sbjct: 260 QFYQETFVPWYEELRRQFELSGELQ-IADGFDPNALPIP 297


>gi|114205601|gb|AAI11395.1| PIN4 protein [Homo sapiens]
          Length = 142

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 50  KVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 108

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 109 AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 142


>gi|67458647|ref|YP_246271.1| hypothetical protein RF_0255 [Rickettsia felis URRWXCal2]
 gi|75536887|sp|Q4UMV2|Y255_RICFE RecName: Full=Uncharacterized protein RF_0255; Flags: Precursor
 gi|67004180|gb|AAY61106.1| unknown [Rickettsia felis URRWXCal2]
          Length = 296

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 17/193 (8%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K+ L+++ V F        +   S  + V SV  + +  + F    K  +      +  V
Sbjct: 3   KLLLIIITVFFAF-----NVAQASLPNIVASVNYEPITLNEFRARKKMIMA-----LNNV 52

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
            +   A+   L    + +L+  + L Q+  D   E     +   I          NK  H
Sbjct: 53  ESLTPAQDKQLSDLAIKSLIDESLLFQYAGDR--EIPQEEIDNAIKSIE----DHNKMPH 106

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVD 193
              +  L    +N   +I      L + +++      ++ SN  +D A     +    + 
Sbjct: 107 GSLLQYLKSRSVNPDSFISQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQKDVEIS 166

Query: 194 YIVLNNRHVPAIA 206
             V  ++     A
Sbjct: 167 MQVFTSKDGGNKA 179


>gi|326336412|ref|ZP_08202582.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325691285|gb|EGD33254.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 461

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 88/264 (33%), Gaps = 48/264 (18%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           V       ++ S+  +         NR ++++      +  +         Q++ K  + 
Sbjct: 90  VNQAIQDSIKVSDTDIRDGV-----NRRIEFLTDQLGDIQKVI--------QFYHKDDEQ 136

Query: 224 YRAPEYKRI----SYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS-PEIRTVEQLVF 277
               E   I            +  + IE++ +E++  + K  K++  +      + Q+V 
Sbjct: 137 SLRDELFDILRQNELSSRMKAKIVENIEVTPEEVKQFFNKIPKDELPTIGTELEIAQIVI 196

Query: 278 PNQK---EADEAFQSLK--------KGKKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSL 325
             +    E ++  + LK         G  F   A        +     +F+++       
Sbjct: 197 EPKAPQSEVNKVIEQLKEIKKDVQENGASFPTKAILYSADRATGGKELTFNRKSSFAKEF 256

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-------------SFQEVKKDIA 372
            D  FSL ++G+ +      FG+ I  V  I+                  S +E KK I 
Sbjct: 257 KDVAFSL-QEGEISDPFKTDFGWHILQVVKIRGKEVSVRHILMVPQIPQNSLEEAKKKI- 314

Query: 373 NQMRITKASEK--VKEDYKRLEEF 394
           N +R    +++    E  K   + 
Sbjct: 315 NDIRNKIINKEFTFAEAAKNFSDE 338


>gi|323496638|ref|ZP_08101690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Vibrio sinaloensis
           DSM 21326]
 gi|323318291|gb|EGA71250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Vibrio sinaloensis
           DSM 21326]
          Length = 92

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++  + LKKG KF  LA++     S      LG F +  +         F
Sbjct: 9   HILVKHKEQAEDIIKQLKKGAKFQTLAKKYSTCPSGKRGGDLGEFKRGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GETLVPHLVKTKFGWHVVKV 88


>gi|93006642|ref|YP_581079.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           cryohalolentis K5]
 gi|92394320|gb|ABE75595.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           cryohalolentis K5]
          Length = 92

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 270 RTVE--QLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
           RT     ++  ++++A++    LKKG  F  LA++      +    SLG F +  +    
Sbjct: 3   RTASALHILVKDKEQAEDILAKLKKGNMFDVLAKKYSTCPSAKKGGSLGEFKQGDMV-PP 61

Query: 325 LADSIFSLAKKGDFTPVI--HGSFGYVIAHV 353
                FS    G+          FG+ +  V
Sbjct: 62  FDKICFS----GELLTPHLVKTKFGWHVVKV 88


>gi|254507147|ref|ZP_05119284.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus 16]
 gi|219549857|gb|EED26845.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus 16]
          Length = 92

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++  + LKKG KF  LA++     S      LG F +  +         F
Sbjct: 9   HILVKHKEQAEDIIKQLKKGAKFQTLAKKYSTCPSGKKGGDLGEFRRGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GETLVPHLVKTKFGWHVVKV 88


>gi|291615694|ref|YP_003518436.1| PpiC [Pantoea ananatis LMG 20103]
 gi|291150724|gb|ADD75308.1| PpiC [Pantoea ananatis LMG 20103]
 gi|327395959|dbj|BAK13381.1| peptidyl-prolyl cis-trans isomerase C PpiC [Pantoea ananatis
           AJ13355]
          Length = 93

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++ +A    + L+KG+ F QLA +     S      LG F +  +   +   ++F
Sbjct: 9   HILVKHEAQAIALLEKLQKGENFQQLARKHSVCPSGRNGGDLGEFRRGKMV-AAFDKAVF 67

Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353
           +  L +       +  +FGY I  V
Sbjct: 68  TCPLLQP---FGPVKTAFGYHIIKV 89


>gi|261250951|ref|ZP_05943525.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio orientalis CIP
           102891]
 gi|260937824|gb|EEX93812.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio orientalis CIP
           102891]
          Length = 92

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++  + LKKG KF  LA++     S      LG F +  +         F
Sbjct: 9   HILVKHKEQAEDIIKQLKKGAKFQTLAKKYSTCPSGKKGGDLGEFRRGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GETLVPHLVKTKFGWHVVKV 88


>gi|114776940|ref|ZP_01451983.1| peptidyl-prolyl cis-trans isomerase C [Mariprofundus ferrooxydans
           PV-1]
 gi|114553026|gb|EAU55457.1| peptidyl-prolyl cis-trans isomerase C [Mariprofundus ferrooxydans
           PV-1]
          Length = 100

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
              ++ P++ + +     ++ G  F +LA +      +     LG F +  +      D 
Sbjct: 13  ARHILVPDRAQCEALKAEIEAGADFAELARKHSTCPSASKGGDLGEFRERQMVK-EFNDV 71

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +FS A+       +   FGY +  ++    
Sbjct: 72  VFS-AELHTVHGPVKTQFGYHLIEITARNK 100


>gi|332532929|ref|ZP_08408801.1| peptidyl-prolyl cis-trans isomerase PpiC [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037595|gb|EGI74047.1| peptidyl-prolyl cis-trans isomerase PpiC [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 92

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  +++ A++  + L KG KF  LA++     S      LG F +  +       
Sbjct: 6   HALHILVKHKEIAEDIIKQLGKGAKFQTLAKKYSSCPSGKKGGDLGEFRRGQMV-PQFDK 64

Query: 328 SIFSLAKKGDFTPVI--HGSFGYVIAHV 353
             F    KG           FG+ +  V
Sbjct: 65  IAF----KGAILEPHLVKTKFGWHVIKV 88


>gi|149187216|ref|ZP_01865514.1| peptidyl-prolyl cis-trans isomerase C [Vibrio shilonii AK1]
 gi|148838752|gb|EDL55691.1| peptidyl-prolyl cis-trans isomerase C [Vibrio shilonii AK1]
          Length = 92

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++  + LKKG KF  LA++     S      LG F K  +         F
Sbjct: 9   HILVKHKEQAEDIIKQLKKGAKFQTLAKKYSTCPSGKKGGDLGEFRKGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GETLVPHLVKTKFGWHVVKV 88


>gi|302675721|ref|XP_003027544.1| hypothetical protein SCHCODRAFT_86066 [Schizophyllum commune H4-8]
 gi|300101231|gb|EFI92641.1| hypothetical protein SCHCODRAFT_86066 [Schizophyllum commune H4-8]
          Length = 137

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLADSI 329
           V  ++     +A EA Q +++G  F ++A+E  +    +  SLG   +  +      ++ 
Sbjct: 47  VRHILCEKHSKATEALQKIQEGVAFNKVAQEYSEDKAKAGGSLGWMVRGSMVGP-FQEAA 105

Query: 330 FSLA----KKGDFTPVIHGSFGYVIAHVSNIK 357
           F+L      K   + ++  +FGY I  V   +
Sbjct: 106 FALTPSTVDKPITSGLVKTNFGYHIIMVEGRR 137


>gi|152978410|ref|YP_001344039.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus
           succinogenes 130Z]
 gi|150840133|gb|ABR74104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus
           succinogenes 130Z]
          Length = 317

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/375 (10%), Positives = 119/375 (31%), Gaps = 78/375 (20%)

Query: 19  VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
            +      ++ +S    +V     V +V  + +  S                       +
Sbjct: 8   AIALAAMGLFVISSGAQAVKVEQVVATVNGEPILESQLQRVM----------------GK 51

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
           RA +    +  +D ++    + + +++ G++ +  +V   +        ++      + +
Sbjct: 52  RANTESNRRVAVDKIIDDMLVQKAVKESGVKVNPAQVNQIVHNIA---DQNGLTYGQL-L 107

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
             L  +GI+  ++  + +  +   +V       G+  S   +++  R   +         
Sbjct: 108 DALDYQGISLSQFKANISNQILMAEVRNRSIGKGVDVSREQVEELSRKMLQQ-------- 159

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                 A  +P     TQ+  ++              +       + + +    +++A+ 
Sbjct: 160 ----AKAGGNPKAITATQYKARH------------ILLKLTPLLNDAQAKAQLTQIRADI 203

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS-FS 316
           +  K  +                 EA + +            +++     +   LG  F 
Sbjct: 204 QSGKTTF----------------AEAAKNY------------SKDYLSGANGGDLGFAFP 235

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           + Y+P+ +    + + AK+G  +      FG+ I  V++ +          ++     + 
Sbjct: 236 ENYVPEFA---KMMTTAKQGVISAPFKTEFGWHILEVTDTRQGDITDVA-YRQKAYETLV 291

Query: 377 ITKASEKVKEDYKRL 391
             +  E  K+  K L
Sbjct: 292 NEQLREYSKDWVKAL 306


>gi|257065468|ref|YP_003145140.1| parvulin-like peptidyl-prolyl isomerase [Slackia heliotrinireducens
           DSM 20476]
 gi|256793121|gb|ACV23791.1| parvulin-like peptidyl-prolyl isomerase [Slackia heliotrinireducens
           DSM 20476]
          Length = 438

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/375 (10%), Positives = 100/375 (26%), Gaps = 30/375 (8%)

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
                G+E     + G I     F   +       +   +   G   ++           
Sbjct: 48  AATVNGVEIGENSITGYIED---FRSLNGLTEDAAWAEWMVNAGYTAEDLRSEVINYYVN 104

Query: 162 TDVVGMFV--GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             +V       G+   +  +D        N   +                +  L     +
Sbjct: 105 QTLVRQAAEENGVTVDSAEIDSQVETMKSNYEDEAAW-------------DEALQSVGIQ 151

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
            ++ YR+ E +  +     V       E S ++L    +     Y     +    ++F  
Sbjct: 152 SEEVYRS-ELELYAMEQALVPIVAGDAEPSEEDLLMYAQMYGPAYDGA--KKSSHILFAA 208

Query: 279 -NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAK 334
            ++  A +    +  G+  F   A +     +  + G        +  + +     S  +
Sbjct: 209 DDEATAQQVLDQINNGEIDFADAAAQYSIDTASAADGGNVGWDALNSFVTEYTDALSNLE 268

Query: 335 KGDFTPVIHGSFGYVIAHVSNIK--PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +G  + ++   +G  I   + +   P    S +E+ +++ + +    +S      Y+   
Sbjct: 269 EGQVSGLVTSDYGIHIIKCTEVFTCPEEVTSIEELPQELQDLIMDYVSSSAQDMAYQEWF 328

Query: 393 EFLALGTS--MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
                G    ++++                      G E A    +E         +   
Sbjct: 329 SSYQEGADIVINDMPEGLPYDVDTSEAEAAMAASDTGAESADTATEEAPSDGAAADESAD 388

Query: 451 SKDHTVALPDGSYMW 465
             D  +         
Sbjct: 389 DVDAAIEETVNGAAA 403


>gi|322420018|ref|YP_004199241.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320126405|gb|ADW13965.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 93

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
           +      ++   ++        ++ G  F ++A       S      LG F    +    
Sbjct: 2   QRAKARHILVATEEACIALKSQIEAGADFAEVARANSLCPSGNQGGLLGEFGPGQMV-RE 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
             + +FS  + G     +   FGY +  +++   
Sbjct: 61  FDEVVFS-GEVGKVLGPVKTQFGYHLIEITSRTA 93


>gi|104782209|ref|YP_608707.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas entomophila L48]
 gi|95111196|emb|CAK15916.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Pseudomonas entomophila L48]
          Length = 93

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              T   ++  ++ + +E    ++ G  F ++A+      S      LGSF    +    
Sbjct: 2   ARATARHILVSSEDQCNELKAQIEAGADFAEIAKANSTCPSSRQGGDLGSFGPGQMV-RE 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +FS          +   FGY +  V++ +
Sbjct: 61  FDTVVFSAPLN-VVQGPVKTQFGYHLLEVTSRQ 92


>gi|296122448|ref|YP_003630226.1| hypothetical protein Plim_2201 [Planctomyces limnophilus DSM 3776]
 gi|296014788|gb|ADG68027.1| hypothetical protein Plim_2201 [Planctomyces limnophilus DSM 3776]
          Length = 913

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 62/196 (31%), Gaps = 25/196 (12%)

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
            +LV             +  D   V   I R       D K S + F   + R  I+E  
Sbjct: 150 SDLVLKDVFLAEARQQNIVLDDAAVDRFIRRI-----TDEKLSAEDFRKVIRRLNIDESR 204

Query: 151 YIDHYTKMLSRTDVV---------GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
             +     L+                 V  + P+                +    L    
Sbjct: 205 LFEVIKSELTANLAARLLRPPVARQGVVTTLTPTPDQYWAEFEKLNLKEELRVAALPVVA 264

Query: 202 V-PAIADPSNAVLTQWFEKYKDN---------YRAPEYKRISYILFDVHEKEKK-IEISN 250
               + +P+NA LT +F KYKD          +  P    +  +  D    E + +  + 
Sbjct: 265 FVGELPEPTNAELTAFFNKYKDKFPTPTGTPGFLQPPKVSLGSLAADFEVFENEVVRPTE 324

Query: 251 DELQAEYEKNKEKYFS 266
           DEL+  YE+NK ++ +
Sbjct: 325 DELRLFYEQNKPRFRA 340



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 106/374 (28%), Gaps = 116/374 (31%)

Query: 356 IKPSFTVSFQEVKKDIANQMRITKA----SEKVKEDYKRLEEFL------ALGTSMDEI- 404
           +       F++V+  I   +   +A       +      +E  L        G  +DE  
Sbjct: 547 VAKDAIQPFEDVRNQIEEMILKERAFAAMRAAISNASSEIETALRLYPTPVEGDKVDEAK 606

Query: 405 -----------------------------------SRREKIVSIDLPLVDFAGKDVKGKE 429
                                              ++    + + L        + +   
Sbjct: 607 RTAAMAEIATKVKEIAGKHKLKYEETSHLSEMELRAKTAGHIGVALETTLDRNPNQQPVP 666

Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE--VLTDVK 487
           V    +K       F +D  +++D              + E  P+R  +L +  V   V 
Sbjct: 667 VHTAAFKIDPFRSRFAEDRLVNRD----------FIYWVIERKPSRVPELSDGPVKDMVV 716

Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEG-KNFRDIGKNLGASLLTTNQINRMDNENKFF-- 544
           + WK  K  E    +A++LV + +KEG K   DI K+   +    + +  + + N F   
Sbjct: 717 EAWKREKARELAEKRASELV-KLAKEGNKPLADIVKDQTITGKPESPVITLRDTNAFSWM 775

Query: 545 -----------------------------GYDGISQVF-SGPVEMVKCFPIENGLSYVVF 574
                                        G D +  VF       V     ++     + 
Sbjct: 776 TVDSSNPQMSFFKAFLRPALSNVTGVTGAGNDFMRTVFQDLQPGQVGAALNQDRSIVYLV 835

Query: 575 KVTNSKVGPVQ-------------------EKDKFI-----SYLTQMMNKDLLDSVIAYL 610
           +VT     P                     EK +F       YLT+  + +L       L
Sbjct: 836 EVTKRAGLPDSGLTSLEELRSEYLATSFIPEKSQFNLPTTYQYLTEGQSMELQQRWFDEL 895

Query: 611 KSQYSVTVHDNLIQ 624
           ++++ V   D  ++
Sbjct: 896 RTRFDVKFSDGEVE 909


>gi|162455542|ref|YP_001617909.1| hypothetical protein sce7260 [Sorangium cellulosum 'So ce 56']
 gi|161166124|emb|CAN97429.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 358

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 73/223 (32%), Gaps = 24/223 (10%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-------GK 294
                +I   E++A YE N +K+  PE R V  +V  ++   ++  +  +K       G+
Sbjct: 131 LPAPADIPASEVRAYYEANADKFSEPERRRVAAIVVGDRALGEKVLKEAQKAGSSSAWGE 190

Query: 295 KF----IQLAEEQGKSLS---DISLGSFSKEYIP-------DVSLADSIFSLAKKGDFT- 339
            F    +   +++  +        LG  S    P          +  + F +   G    
Sbjct: 191 LFFKHSLTAPKDKSAAPPLDLAGELGIVSPPGDPRGAHPRVPEPVRAAAFRIGGVGAVGE 250

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
            ++     + I  ++ +       F E ++ I   +   K  ++ +     L +      
Sbjct: 251 ELVEADGRFFIVRLNGLTGGHRREFAEAERSIRVALLQQKMQDQERALEDELRKKF--PV 308

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
            ++E +     +   L     A +    K +   P +      
Sbjct: 309 EINEAALSSVKLPAQLMGTGSAAQPDPAKPLTPQPERSGAAAA 351



 Score = 38.4 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 91/299 (30%), Gaps = 20/299 (6%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
             ++L +  ++   E    L   +     A  +G    D ++    ++ + +  +A +  
Sbjct: 71  QFDRLRYQTKERRRELLSELIDAELLALEARRRGLD-KDPAVEDTIRQILREAMIARARK 129

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-VKKDIANQMRITKA-SEKVKEDY 388
            L    D             + V     +    F E  ++ +A  +   +A  EKV ++ 
Sbjct: 130 GLPAPADIPA----------SEVRAYYEANADKFSEPERRRVAAIVVGDRALGEKVLKEA 179

Query: 389 KRLEEFLALGT-----SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFR 442
           ++     A G      S+     +     +DL   +       G    A P   + +   
Sbjct: 180 QKAGSSSAWGELFFKHSLTAPKDKSAAPPLDL-AGELGIVSPPGDPRGAHPRVPEPVRAA 238

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
            F      +    +   DG +  V++        R+  E    ++      K  ++  + 
Sbjct: 239 AFRIGGVGAVGEELVEADGRFFIVRLNGLTGGHRREFAEAERSIRVALLQQKMQDQERAL 298

Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
            ++L  ++  E          L A L+ T    + D           S   + P     
Sbjct: 299 EDELRKKFPVEINEAALSSVKLPAQLMGTGSAAQPDPAKPLTPQPERSGAAAAPSSDAG 357


>gi|77920470|ref|YP_358285.1| peptidyl-prolyl cis-trans isomerase activity [Pelobacter
           carbinolicus DSM 2380]
 gi|77546553|gb|ABA90115.1| peptidyl-prolyl cis-trans isomerase activity [Pelobacter
           carbinolicus DSM 2380]
          Length = 93

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
              +   ++ P ++E     + ++ G+ F  +A +  K  S     +LG F    +    
Sbjct: 2   ARASARHILVPTEEECLSLKKRIEAGETFAAIAGQYSKCPSGRQGGALGEFRPGQMVK-E 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             + +FS  + G     +   FGY +  + + 
Sbjct: 61  FDEVVFS-GEIGKVLGPVKTQFGYHLIEILSR 91


>gi|221215735|ref|ZP_03588696.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD1]
 gi|221164437|gb|EED96922.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD1]
          Length = 262

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 18/171 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSL-KKGKKF 296
           E    + +  Y ++  ++   +I     ++F           ++ A+ A   +      F
Sbjct: 86  EPDRADCERYYAQHPARFRRNDIVYASHVLFAVTDRVPLAPLRQRAERALADVVAAPDTF 145

Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             +A        +    SLG   +          ++F     G    +++  FG+ I  +
Sbjct: 146 DAVARASSNCPSAQVGGSLGQVLRGDTV-PEFEAALFDTDGLGVLPKLVNTRFGFHIVRI 204

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
                  TV F  V   IA  +   +  ++    Y  +   LA G  ++ +
Sbjct: 205 DRRVAGDTVPFDAVAAQIAAHLTA-RVRQRAMRQYVAI---LAGGARIEGV 251


>gi|167754419|ref|ZP_02426546.1| hypothetical protein ALIPUT_02713 [Alistipes putredinis DSM 17216]
 gi|167659044|gb|EDS03174.1| hypothetical protein ALIPUT_02713 [Alistipes putredinis DSM 17216]
          Length = 469

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 61/524 (11%), Positives = 148/524 (28%), Gaps = 107/524 (20%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           ++K  L    +   I+  +     V     V  VG   + +S     +  EL    ++ G
Sbjct: 1   MSKKILFCAALVLAIFAGAAQKRQVMLDRVVAVVGGSSILWSEVD-EYAGELVEQRRQQG 59

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
           +  + +         + L+ L+    L        ++  +  +   +             
Sbjct: 60  YTSDRDP------HDEALEQLLMQKLLFNQALIDSVDVSYSGIAQRV------------- 100

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
                                H   ++     +             + +  R  +E ++ 
Sbjct: 101 -------------------EAHLQALIDDAGSIAALETKQHMPIFNVREMLRQRYEEQA- 140

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
            Y       V          + ++++K                  D         I    
Sbjct: 141 -YAQAMQSSVVGKIKVIPGEVERYYKK-----------------TDPDSLP---TIPEQY 179

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDIS 311
           + A+  +        + RT E+L+        +  + + KG+  F  +A       S IS
Sbjct: 180 VYAQITRFPASIKEAKQRTKERLL--------DMRERIIKGQTRFDIMARMYSMDGSAIS 231

Query: 312 LGSFSKEYIPDV--SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK------------ 357
            G    + +       AD++  L K G  + V+   +GY +  + + K            
Sbjct: 232 GGELDPQPLDGFVRQFADALADL-KPGQVSEVVETQYGYHLIQLIDQKGRMYHARHIVLR 290

Query: 358 --------PSFTVSFQEVKKDIANQ-MRITKASEKVKEDYK-RLEEFLALGTSMDEISRR 407
                    +       +   I    +   +A+ K  +D   ++   +     + E+++R
Sbjct: 291 PSYTLEELAAPARMLDSIANLIRKDSITFEEAARKFSDDDNSKMNGGVVTNHDLLELTQR 350

Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL----LFRVFGKDDPLSKDHTVALPDGSY 463
            +    +   +        GK +        L    +   +  +D +    +        
Sbjct: 351 WEASYTETRFMKEDFGRAGGKSLDDYNALRNLKEGEISDAYQTEDWMGNQLSKI------ 404

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
             V++ + IP     L+E    V++     K  +      ++ +
Sbjct: 405 --VKLVKVIPPHKVSLDEDYIRVEQLALNAKREKVFKEWLDKKI 446


>gi|325107772|ref|YP_004268840.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           brasiliensis DSM 5305]
 gi|324968040|gb|ADY58818.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           brasiliensis DSM 5305]
          Length = 310

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 94/276 (34%), Gaps = 47/276 (17%)

Query: 135 DVFVSRLAREGINEKEYIDHYTK---MLSRTDVVGMFVG--GMRPSNLLLDQAKRFYFEN 189
           D++++ L   G+ E ++  H ++    L    +V  F+    + P +  LD+      + 
Sbjct: 52  DLYLTTL---GLPEDQWDTHRSRAVDQLIERTLVRQFLNERNVTPPSATLDRQLALVEQV 108

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
              +    N          +   L                      L     +  +  +S
Sbjct: 109 LRNEE---NPEAALKKLGMTRDELQA-----------------ELSLPLAWRRYVRQIVS 148

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSLKKGK-KF 296
             ++   +EK++ +      R   Q+     ++A            +E  Q ++ G+  F
Sbjct: 149 ERQIAEYFEKHQSELDGT-KRKAAQIFLKLPQDASETDIEQAKSRLNELKQQIQAGQLTF 207

Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            + A++  +S S      LG+F+       ++A   F     G+ +     SFG  + HV
Sbjct: 208 AEAAQQHSESPSADKGGELGAFTFSGQMPAAIAKQAFE-TPVGEISEPFASSFGVHLLHV 266

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           +   P    S ++ +  I ++       + V    +
Sbjct: 267 TEEIPGQF-SLEDARPAILDRYSDEIWKQAVNRLKQ 301


>gi|330823101|ref|YP_004386404.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans K601]
 gi|329308473|gb|AEB82888.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans K601]
          Length = 275

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLK----KG 293
           E S +  +  +  +   +   E   +  ++F           ++ A+     L+     G
Sbjct: 96  EPSEEACRRYHAAHPTLHGEGERLRLRHVLFAVTPGVDVKQLRQRAESVLLDLRCDDDGG 155

Query: 294 KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            +F + A +     S      LG  ++        A  IF  A+ G  + ++H  FG  +
Sbjct: 156 VRFAEAARQWSNCPSGQQGGELGWLTQADCA-PEFAREIFGKAEVGVLSRLVHSRFGLHV 214

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
             V   +    ++F+EV+  +A  +R            ++  + LA    ++ +      
Sbjct: 215 VEVCEREAGRALAFEEVQASVALLLRQQ----AWINALRQYLQLLAGAAEVEGVQLDAAD 270

Query: 411 VSI 413
             +
Sbjct: 271 TPL 273


>gi|299742349|ref|XP_001832406.2| peptidyl-prolyl cis-trans isomerase pin4 [Coprinopsis cinerea
           okayama7#130]
 gi|298405143|gb|EAU89440.2| peptidyl-prolyl cis-trans isomerase pin4 [Coprinopsis cinerea
           okayama7#130]
          Length = 139

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLADSI 329
           V  ++     +A EA Q +++G+ F ++A+E  +    +  SLG   +  +   +  D+ 
Sbjct: 49  VRHILCEKHSKASEALQKIQEGQAFNKVAQEYSEDKAKAGGSLGWMVRGSMVG-AFQDAA 107

Query: 330 FSLA----KKGDFTPVIHGSFGYVIAHVSNIK 357
           F+L      K   + ++  +FGY I  V   +
Sbjct: 108 FALTPSTVDKPITSGLVKTNFGYHIIMVEGRR 139


>gi|157374718|ref|YP_001473318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
 gi|157317092|gb|ABV36190.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
          Length = 92

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
             T   L+   + + +E  Q +  G  F  +A+      S      LGSF    +     
Sbjct: 3   QATARHLLVSTEVQCEELKQQILAGADFGDVAKANSSCPSGAQGGDLGSFGPGMMVK-EF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            + +FS     +    +   FGY +  V++ 
Sbjct: 62  DEVVFSAPLN-EVQGPVKTQFGYHLLEVTSR 91


>gi|90408115|ref|ZP_01216285.1| peptidyl-prolyl cis-trans isomerase C [Psychromonas sp. CNPT3]
 gi|90310801|gb|EAS38916.1| peptidyl-prolyl cis-trans isomerase C [Psychromonas sp. CNPT3]
          Length = 92

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  +++ A++  Q LKKG KF  LA++     S     SLG F K  +   +     F
Sbjct: 9   HILVKHRELAEDIMQQLKKGAKFQTLAKKYSSCPSAKKGGSLGEFKKGSMV-PAFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S                FG+ +  V
Sbjct: 68  SA----QILTPQIVKTKFGWHVIKV 88


>gi|56477779|ref|YP_159368.1| putative peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
 gi|56313822|emb|CAI08467.1| putative peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
          Length = 236

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 67/150 (44%), Gaps = 14/150 (9%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSL-- 290
           +  + K   ++++E++  ++ N++++ S  +  V  ++F       ++  A +A ++L  
Sbjct: 46  LEREVKLEPVADEEIRRYFDANRQRFRSGALFEVRHILFDTTRDGSDRATAQKAERALFH 105

Query: 291 --KKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
                + F ++A E+     +    +LG  S+  +       ++ +  K G    ++   
Sbjct: 106 LRNNPEAFERVAAEESCCTSAKIGGALGQISEGAVV-PEFWVALVNFGKAGLLPQLVETR 164

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           FG+ I  + ++     + F+ V+  I + +
Sbjct: 165 FGHHIVMIDHLALGEALPFEAVQARIRDYL 194


>gi|282878158|ref|ZP_06286955.1| PPIC-type PPIASE domain protein [Prevotella buccalis ATCC 35310]
 gi|281299736|gb|EFA92108.1| PPIC-type PPIASE domain protein [Prevotella buccalis ATCC 35310]
          Length = 476

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/406 (14%), Positives = 121/406 (29%), Gaps = 52/406 (12%)

Query: 240 HEKEKKIEISNDELQA-----EYEKNKEKYFSPEIRTVEQLVF------------PNQKE 282
            ++ +   I++ +++        E  +       +     ++F              ++ 
Sbjct: 95  DQQIRPAMITDADVEQRAREIYRESQQRVDGVGGLVKPAHILFGIRQTDGEDKKNQAKQR 154

Query: 283 ADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           AD  + +L KG  F  LA     ++G +     L    K         D  FSL K G+ 
Sbjct: 155 ADSVYNALLKGADFAALARQLSDDRGSAEQGGELPWIEKGQTLK-EFEDMAFSLRK-GEL 212

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK-VKEDYKRLEEFLAL 397
           +       GY I  + +        +  ++  I   +      E+ + +  + L +    
Sbjct: 213 SKPFLSPAGYHIVLLKD--KGKFFPYDSLRTSILRFIEQRGIREQIISQKIETLAKAAGP 270

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
             + DE+        +     +   KD   K +    +   LLF +  K+          
Sbjct: 271 NVTADEV--------LAKKCAEMVAKDSNLKYLIQEYHDGLLLFEISSKEFWSKAQSDER 322

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
                Y     K+    +              +   K   +   K  + +         F
Sbjct: 323 -GQADYFKKNKKKYKWEQP------RFKGIAYYTKDKKDVKAVRKVVKQL--------PF 367

Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
               + L ++    + I R+  E   F     S V            +E    Y      
Sbjct: 368 DQWTEKLHSTFNNDS-ILRIKVEKGIFKAGDNSLVDRNVFGKKVLLKLEKDYPYAATYGK 426

Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
             K    ++     + +      +L    +  L+ QY+VTV+ +++
Sbjct: 427 KLKAP--KDYRDVKAQVVADYQDELEKQWVERLRKQYAVTVNRSVL 470


>gi|303243162|ref|ZP_07329598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
 gi|302589297|gb|EFL59109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
          Length = 461

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 93/344 (27%), Gaps = 85/344 (24%)

Query: 28  WGLSDALFSVSGSSTVVSVGRQ--------KVPFSSFINS-WKQELGMISQKIGFVVNSE 78
           WG        + +ST   V           K+  +    + + ++     +K        
Sbjct: 24  WGPFFKKGGDNVNSTSAKVDESKQFGFETLKINGAYVNTALFNEQYNAFYEKYKNNAEML 83

Query: 79  RARSVGLDKKILDNLVSGATLDQF-IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
           +      +   LD L+    +D +      ++     V   +A+               +
Sbjct: 84  QKTDEERNDMFLDQLIEKVVMDDYFANKSNVKVSDEEVNAYVAKYVAPRY-SGSEEQTTY 142

Query: 138 VSRLAREGI-NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
                  G  NE++  +     L +  V                                
Sbjct: 143 FQ---SMGFANEEDMKNTIKDYLLKQQVYYA----------------------------- 170

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
                  A    ++      +E++K   +  + + I   + D                  
Sbjct: 171 ---AATKAGLTLTDKERKDAYEEHKSYNKKVDLRNILVAIND------------------ 209

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
                        RT EQ     Q+ A+  +  LK G+ F  LA++          G   
Sbjct: 210 ------------KRTKEQ----AQELANTVYTKLKNGESFEALAKQYSDDSESKENGGQK 253

Query: 317 KEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           K  +P   +    +++F  A+ G     I+ + GY I  +  + 
Sbjct: 254 KNVLPGNNETDYDNAVFK-AEAGQLLEPIYLAKGYEIVKIEKVT 296


>gi|32475387|ref|NP_868381.1| peptidyl-prolyl cis-trans isomerase C2 [Rhodopirellula baltica SH
           1]
 gi|32445928|emb|CAD78659.1| peptidyl-prolyl cis-trans isomerase C2 [Rhodopirellula baltica SH
           1]
 gi|327537999|gb|EGF24693.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopirellula
           baltica WH47]
          Length = 93

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADS 328
              ++   ++   +    ++KG+ F  +A E        S  +LG+FS   +      + 
Sbjct: 6   ARHILVETEEACQDLKDQIEKGQDFGAIAAEFSSCPSGKSGGALGTFSPGQMVK-EFDEV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           +FS  + G     +   FGY +  ++  
Sbjct: 65  VFS-GELGKVHGPVKTQFGYHLIEITQR 91


>gi|326561196|gb|EGE11561.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 7169]
          Length = 367

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 100/331 (30%), Gaps = 65/331 (19%)

Query: 71  IGFVVNSERARSVGLDKKILD--NLVSG--ATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           +G   +  +     LDK+I D  NL++    TL     + G+  D   V  E+   P   
Sbjct: 77  LGRPSSDAQFIKQVLDKEIFDSTNLIASSHQTLPNITVN-GVAIDPKAVAAEVQYHPA-- 133

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
              N     +F++                 + L R +V+                 +R +
Sbjct: 134 ---NSQEEALFLAA-----------QALVMRELLRQEVIECLG-------------ERAW 166

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            EN       L  + V A   P  A    ++   +  + +     + +IL     +E + 
Sbjct: 167 LENEEATIAKLLEQQVIAK-SPDKASCQNYYHANQVEFVSTPIMTLRHILLACPPQEGEE 225

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            I   EL+ +  +  ++      R                         FI+ A      
Sbjct: 226 RI---ELKKQARQLIDRLNQSHNRD----------------------SDFIEFARRYSAC 260

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG   K          ++F+L   G     I   +G  +  V   +    +S
Sbjct: 261 PSKDDGGELGVLQKGSTV-PEFESAVFALP-VGISINPIETRYGIHVIEVLQKQEGRQLS 318

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           F+E    I N ++       + +    L + 
Sbjct: 319 FEEAYPIIENHLKQQSFHHSLCDYLFELSQK 349


>gi|297670993|ref|XP_002813636.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Pongo abelii]
          Length = 157

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 65  KVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 123

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 124 AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 157


>gi|268316847|ref|YP_003290566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
 gi|262334381|gb|ACY48178.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
          Length = 684

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 72/528 (13%), Positives = 159/528 (30%), Gaps = 103/528 (19%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
               V   G + +  ++F + + + +G    ++    +S +A      +  L+  V+   
Sbjct: 28  NPEVVAVAGSEVIDLTTFEDQYARSVG---NRLEAADDSLQAY-----QDFLERYVNYRL 79

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
             Q     G + D   V                     +   LAR  +  +E I+   + 
Sbjct: 80  RVQEARARGYDRDSAIVAEA----------------SAYQLELARNHLMRQEVIEPLLRT 123

Query: 159 LSRTDV----VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV----LNNRHVPAIADPSN 210
           L         +      +       D    +      +D +      N        DPS 
Sbjct: 124 LYARMPDMVDISHIFVRVPTDATPEDTLAAYRRLQALIDSVRQGADFNEIAFRHSDDPSA 183

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL------------QAEYE 258
                         R+P   R  +      +  + IE                  +  Y 
Sbjct: 184 --------------RSPRSTRGGWGHIGWIKMGQTIEPMETYAFNTPVGELSPIFRTRYG 229

Query: 259 KN----KEKYFSPEIRTVEQLVF---PNQKEADEAFQSLKK--------GKKFIQLAEEQ 303
            +     ++  +P       ++    P  +++    ++L             F +LA + 
Sbjct: 230 YHVLKVHDRKPAPYDVRAAHIMITPAPTPEDSARVRRTLDSLRQLVLSGKADFAELARQH 289

Query: 304 GKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            +          LG  S      V + D++F+L + GD + ++   FG  I  + + +P 
Sbjct: 290 SEDWRTKSRGGDLGYLSFAQPMPVMVRDTLFALKEIGDVSHIVTTPFGLHIFQLKDRRPI 349

Query: 360 FTVSFQ-----------------EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
              +F+                 E +     Q+R              L +  A   ++ 
Sbjct: 350 -PPTFEAAYDTLLTVADRLGRLQEARNRFVAQLRRRLHVRLDTAQLFTLLQVAAHPDTLA 408

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY-KEQLLFRVFGKDDPLSKDHTVALPDG 461
               R ++ ++DL     + +D        I Y  +Q L R   + D ++++  +   D 
Sbjct: 409 LRVSRRELGALDLSQPFASVEDSSYTLAELIDYINQQNLLRRTSRRDTIAQERLLRAADR 468

Query: 462 -------SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
                  SY  ++  E  P   R +++ +  +       +   +V+ +
Sbjct: 469 FLDDRVLSYEALRRAEQDPEFQRTMQDFIDGLLAFKLLEEAVWKVAER 516



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 87/245 (35%), Gaps = 23/245 (9%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN----RSVDYIVLNNRHVPAIAD--PS 209
            + L   D+   F   +  S+  L +   +  +     R+     +    +   AD    
Sbjct: 413 RRELGALDLSQPF-ASVEDSSYTLAELIDYINQQNLLRRTSRRDTIAQERLLRAADRFLD 471

Query: 210 NAVLTQWFEKYKDNYRAPEYKR--------ISYILFDVHEKEKKIEISNDELQAEYEKNK 261
           + VL+  +E  +   + PE++R        +           K  E     L+A YE + 
Sbjct: 472 DRVLS--YEALRRAEQDPEFQRTMQDFIDGLLAFKLLEEAVWKVAERDTAGLRAYYEAHA 529

Query: 262 EKYFSPEIRTVEQLVFPNQKEA---DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
            ++  PE   V  L F  Q+++      ++ L++G    +L  E     S          
Sbjct: 530 GEFVFPERTRV--LSFRTQRDSVLEQRVYEPLQQGVPVARLIAELTADSSAGITVDTVYI 587

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
             P  S  D    L + G +T       G+V+ +   ++P    +F+E + D+ +  +  
Sbjct: 588 EKPTGSFYDRALRL-EAGRYTEPFRYWNGHVLLYNDGLEPPRPKTFREARADVLSAYQKE 646

Query: 379 KASEK 383
             +  
Sbjct: 647 LEARL 651


>gi|62739712|gb|AAH93700.1| Protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Homo sapiens]
 gi|85567709|gb|AAI12282.1| Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Homo sapiens]
 gi|313883986|gb|ADR83479.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [synthetic construct]
          Length = 156

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 64  KVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 122

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY I  V   K
Sbjct: 123 AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 156


>gi|78223024|ref|YP_384771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
 gi|78194279|gb|ABB32046.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
          Length = 92

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++   + E  +    ++ G  F ++A +     S      LG+F    +      +
Sbjct: 5   TARHILVSTEAECLQLKAEIEAGADFAEIARKNSACPSRMQGGDLGAFVPGQMVK-EFDE 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +FS  +       +   FGY +  ++  
Sbjct: 64  VVFS-GEINKVLGPVRTQFGYHLIEITKR 91


>gi|297568735|ref|YP_003690079.1| hypothetical protein DaAHT2_0756 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924650|gb|ADH85460.1| hypothetical protein DaAHT2_0756 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 544

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 60/161 (37%), Gaps = 7/161 (4%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-ADEAFQSLKKGKK 295
            D    + +  +   E++  Y+++ E +  PE   +  ++F    E  D+  + +  G+ 
Sbjct: 367 LDARLIQPRTVVEEAEIEDYYQRHPELFTRPEE--LSFMLFTGPAELVDDLRREIVGGRD 424

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F           +     + ++    D ++A     LA  G+ + +      Y +  +S 
Sbjct: 425 FTAAISRHSPGGAPRQRLAVTE---LDPAVAAVAAELA-PGEVSRLFPLHNHYALLRLSG 480

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
             P        V+++I   ++  K  E   E   RL +  A
Sbjct: 481 RHPGRLQPLAAVREEIRQTLQEQKEQEVRAELINRLRQHAA 521



 Score = 44.2 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 59/446 (13%), Positives = 144/446 (32%), Gaps = 66/446 (14%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           S +     E +++IE+++D L   Y +            V    F  +++A  A   L++
Sbjct: 101 SLMRLKAEEVDQRIELTDDRLYQLYLEQHTPVLQ-----VRNFFFHTEEQATAAAAELQE 155

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           G +                     + ++P   +      + A  GD    + G+ G ++ 
Sbjct: 156 GHRTADELATLPTDAGGPDHSGERRLHLPRKPADWQQALAGAVPGDVVGPLPGTHGAIVL 215

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR-REKI 410
            +     S +   +  +  +   +R  +      E   RL    A+  + + ++R   + 
Sbjct: 216 QIIAAVESTSADLEPHRAGLERDLRRREEQRLTSELVARLRAKFAVEINHELLARLSPEP 275

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI-K 469
              +L  +     + +   VA         + V G++    + H  A  +   +  ++  
Sbjct: 276 PGEELADLVLIDNNQEPITVAQ-------FWAVLGREQEFRRRHQFAAEEFERLKQRVVN 328

Query: 470 ESIPA-------------RDRKLE-------------EVLTDVKKDWKTVKTAE------ 497
             I               R   L              E+   + +    V+ AE      
Sbjct: 329 GIIAQTLISWEADARDYHRREPLAPIYQFYRQHRLIQELDARLIQPRTVVEEAEIEDYYQ 388

Query: 498 ---EVSSKANQLVLEYSKEGKNF-RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
              E+ ++  +L             D+ + +      T  I+R            ++++ 
Sbjct: 389 RHPELFTRPEELSFMLFTGPAELVDDLRREIVGGRDFTAAISRHSPGGAPRQRLAVTELD 448

Query: 554 S---------GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNK 600
                      P E+ + FP+ N   Y + +++    G +Q     +++    L +   +
Sbjct: 449 PAVAAVAAELAPGEVSRLFPLHN--HYALLRLSGRHPGRLQPLAAVREEIRQTLQEQKEQ 506

Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRY 626
           ++   +I  L+   ++ ++    QR 
Sbjct: 507 EVRAELINRLRQHAAIEINQPAWQRL 532


>gi|221128893|ref|XP_002155754.1| PREDICTED: similar to Y48C3A.16 [Hydra magnipapillata]
          Length = 141

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA   LK GK+F  +A +  +    S   LG   +  +      D+
Sbjct: 49  KVRHILCEKQGKCLEAMALLKAGKRFSDVATQYSEDKARSGGDLGWMVRGSMVGP-FQDA 107

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L            P +  +FGY I  +   K
Sbjct: 108 AFALQPSTVDNPIYTDPPVKTNFGYHIIMIEGKK 141


>gi|93006523|ref|YP_580960.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           cryohalolentis K5]
 gi|92394201|gb|ABE75476.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           cryohalolentis K5]
          Length = 465

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/419 (12%), Positives = 110/419 (26%), Gaps = 72/419 (17%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
            S    +  V    +  S  I +  Q                 A S  L  ++L+ L+  
Sbjct: 56  NSTDGIIALVNENAILKSDLIAAIAQTQARA-----KAAGEPIANSAQLQSEVLNALILR 110

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL-AREGINEKEYIDHY 155
                 I+ +GL  D   +   + +       +   S      RL + +  +        
Sbjct: 111 ELQLSLIKRVGLNPDEASINKRLEQIA---KAEGLNSIAALQQRLDSAQSGSYATLRAQL 167

Query: 156 TKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSV---------------DYIVLNN 199
            +  +   +        +R S   +D         R                 DY  L+ 
Sbjct: 168 IEDAAIQALQQRQITNRVRISEQDIDAFLASPEAKRLNQSEYQTVHVRVPYMDDYSRLSE 227

Query: 200 RHVPAIADPSNA----------VLTQWFEKYKDNYRAPEYK-RISYILFDVHEKEKKIEI 248
                    +             + +     + +Y  P     + +        E   EI
Sbjct: 228 AQRNDALKVAQKLRTRLLVPNVNVAEAIAASQGSYPIPLQGGDMGFHKAAALPTELSSEI 287

Query: 249 SNDE----------------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEA 283
           +  E                ++   +K  +    P       ++            +++ 
Sbjct: 288 TKLEVGAVSAPLVTPEGIDIIKLANKKANDTMLVP-QWNTRHILVKVDELQTDALAEQKI 346

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA--DSIFSLAKKGDFTPV 341
           ++ +  L+ G  F  LA            G        D  +A  +++      GD++  
Sbjct: 347 NDLYSQLRNGAAFDSLASTYSDDPGSAGRGGDLDWVGEDQMIAPFEAMMKNTAVGDYSAP 406

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR--LEEFLALG 398
               FG+ I  V   +       Q+V  +    M      +++    K   L+E  A  
Sbjct: 407 FKTQFGWHILKVEGKRQ------QDVSDEYRRTMARQALYQRLAPQAKEDWLQELRAGA 459


>gi|114563785|ref|YP_751298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
 gi|114335078|gb|ABI72460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
          Length = 92

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
             T   L+   Q++ +   Q ++ G  F  +A+      S      LGSF    +     
Sbjct: 3   QATARHLLVSTQEQCESLKQQIEAGADFADVAKANSSCPSGAQGGELGSFGPGMMVK-EF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            D +FS          +   FG+ +  V++ 
Sbjct: 62  DDVVFSAPLN-VVQGPVKTQFGFHLLEVTSR 91


>gi|313222184|emb|CBY39168.1| unnamed protein product [Oikopleura dioica]
          Length = 132

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 258 EKNKEKYFSPEI-RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGS 314
           EK   K  +P     V  ++   Q +  EA   LK+G+ F  +A    +    S  SLG 
Sbjct: 26  EKPVAKSAAPARSINVRHILCEKQSKVLEAMGKLKEGQAFNTVATNYSEDKARSGGSLGW 85

Query: 315 FSKEYIPDVSLADSIFSL-----AKKGDFTPVIHGSFGYVIAHVSNIK 357
             +  +      ++ F L     +      P +   FGY I  +   K
Sbjct: 86  MLRGTMVGP-FQEAAFQLPISTCSNPSYTDPPVKTKFGYHIIMIEGKK 132


>gi|326563012|gb|EGE13287.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 46P47B1]
          Length = 367

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 100/331 (30%), Gaps = 65/331 (19%)

Query: 71  IGFVVNSERARSVGLDKKILD--NLVSG--ATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           +G   +  +     LDK+I D  NL++    TL     + G+  D   V  E+   P   
Sbjct: 77  LGRPSSDAQFIKQALDKEIFDSTNLIASSHQTLPNITVN-GVAIDPKAVAAEVQYHPA-- 133

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
              N     +F++                 + L R +V+                 +R +
Sbjct: 134 ---NSQEEALFLAA-----------QALVMRELLRQEVIECLG-------------ERAW 166

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            EN       L  + V A   P  A    ++   +  + +     + +IL     +E + 
Sbjct: 167 LENEEATIAKLLEQKVIAK-SPDKASCQNYYHANQVEFVSMPIMTLRHILLACPPQEGEE 225

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            I   EL+ +  +  ++      R                         FI+ A      
Sbjct: 226 RI---ELKKQARQLIDRLNQSHNRD----------------------SDFIEFARRYSAC 260

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG   K          ++F+L   G     I   +G  +  V   +    +S
Sbjct: 261 PSKDDGGELGVLQKGSTV-PEFESAVFALP-VGISINPIETRYGIHVIEVLQKQEGRQLS 318

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           F+E    I N ++       + +    L + 
Sbjct: 319 FEEAYPIIENHLKQQSFHHSLCDYLFELSQK 349


>gi|119468650|ref|ZP_01611702.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Alteromonadales
           bacterium TW-7]
 gi|119447706|gb|EAW28972.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Alteromonadales
           bacterium TW-7]
          Length = 92

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 10/88 (11%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  +++ A++  + L KG KF  LA++     S      LG F +  +       
Sbjct: 6   HALHILVKHKEIAEDIIKQLGKGAKFQTLAKKYSSCPSGKKGGDLGEFRRGQMV-PQFDK 64

Query: 328 SIFSLAKKGDFTPVI--HGSFGYVIAHV 353
             F     G           FG+ +  V
Sbjct: 65  IAF----NGAILEPHLVKTKFGWHVIKV 88


>gi|332882741|ref|ZP_08450352.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679243|gb|EGJ52229.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 463

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 115/327 (35%), Gaps = 46/327 (14%)

Query: 157 KMLSRTDVVGMFV-------GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
           K ++R  ++G  +         ++ S  L D   R     R ++Y+      +       
Sbjct: 73  KNITRCQMLGKLMEDKLYAHQAVQDSVKLTDAEVREQVNQR-IEYLT---AQLGGDIK-- 126

Query: 210 NAVLTQWFEKYKDNYRAPEYKRI----SYILFDVHEKEKKIEISNDELQAEYE----KNK 261
              L ++++K  +     E   +    +       +  K +E++ +E++  +       +
Sbjct: 127 --KLLEFYKKDDEQSMREELFTLFKVNTLAQRMRQQIVKDVEVTPEEVRNFFNAIPADER 184

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSL-----------KKGKKFIQLAEEQGKS-LSD 309
             + +     + Q+V           + +           + G  F   A    +   + 
Sbjct: 185 PHFGT--ELEIAQIVVNPVAPPSAVQKVIDLLNDIKKDVEENGMSFATKAILYSQDRATG 242

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             L +F++    D +  D  F+L + G+ +     SFG+ I  +  I+         V+ 
Sbjct: 243 GQLLTFNRNSAFDKAFKDVAFTLRE-GEISKPFESSFGWHIIQMDKIRGKEV----SVRH 297

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSIDLPLVDFAGKDVKGK 428
            +       +A ++ KE   ++ + +     + DE +R     S +    +  G+ +  +
Sbjct: 298 ILIMPDIPQEALDEAKEKIAKIRDRIVNKELTFDEAARNF---SDEKETRNDGGQLINPE 354

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           ++++     ++   ++ +   L  D  
Sbjct: 355 DLSSRFELTRIEPSLYARISDLKDDEV 381


>gi|332971078|gb|EGK10048.1| peptidyl-prolyl cis-trans isomerase [Desmospora sp. 8437]
          Length = 337

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 87/252 (34%), Gaps = 30/252 (11%)

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
           +     ++   V      G +      +  K+F  + + +              D     
Sbjct: 89  EIVKNYIAEQMVAKRVKNGKKYEKQAEESMKQFEEQLKQM-------PAEGKDKDKKKQD 141

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF------- 265
           L  + +++   +   + K        V    +   ++  +L+ +Y K+ + Y        
Sbjct: 142 LEGYLKEH--GFTKGQLKDFLEKNNKVSAYFED-RVNEKDLKKQYNKSDDFYNIKLRHIL 198

Query: 266 -----SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
                 PE +  ++     +  A++  + L+ GKKF ++A++        + G    E  
Sbjct: 199 ISTTEDPEGKKKKRSDKDAKARAEKVKKELEGGKKFSEMAKKYSDDPGSKAQGG-EMEGT 257

Query: 321 PD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
           PD      + +          +  I   +GY I  V+  K    +SF +VK+++  Q   
Sbjct: 258 PDQWVPEFSKAAVK-TPIDKISDPIKSDYGYHIIQVTERKK---LSFDKVKEEMMGQKVT 313

Query: 378 TKASEKVKEDYK 389
                 +K++ K
Sbjct: 314 ELYQAFIKDEVK 325


>gi|330721601|gb|EGG99623.1| Peptidyl-prolyl cis-trans isomerase ppiC [gamma proteobacterium
           IMCC2047]
          Length = 93

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              L+   +++  +    ++ G  F ++A++     S      LG F    +      + 
Sbjct: 6   ARHLLVSTEEQCQQIKTDIENGADFGEMAKQHSSCPSGGRGGDLGEFGPGQMV-REFDEV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +FS          +   FGY +  V++   
Sbjct: 65  VFSAPLN-TVQGPVKTQFGYHLLEVTSRTE 93


>gi|323494654|ref|ZP_08099757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Vibrio brasiliensis
           LMG 20546]
 gi|323311087|gb|EGA64248.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Vibrio brasiliensis
           LMG 20546]
          Length = 92

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++  + LKKG KF  LA++     S      LG F +  +         F
Sbjct: 9   HILVKHKEQAEDIIKQLKKGAKFQTLAKKYSNCPSGKRGGDLGEFKRGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GETLVPHLVKTKFGWHVVKV 88


>gi|229552932|ref|ZP_04441657.1| peptidylprolyl isomerase [Lactobacillus rhamnosus LMS2-1]
 gi|258540457|ref|YP_003174956.1| peptidylprolyl isomerase [Lactobacillus rhamnosus Lc 705]
 gi|229313708|gb|EEN79681.1| peptidylprolyl isomerase [Lactobacillus rhamnosus LMS2-1]
 gi|257152133|emb|CAR91105.1| Endopeptidase maturation protein prtM [Lactobacillus rhamnosus Lc
           705]
          Length = 300

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 28/188 (14%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             S   +   +  YK+ Y              ++   + I   L      +K  +++N +
Sbjct: 77  SVSAKSVDNTYNSYKNEYGENFTSFLSQNGFSKSSFRQSIRTNLLSEVALKKLKKVTNSQ 136

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+A ++  + K       TV+ ++  ++  A +    L  GK F  LA+      S    
Sbjct: 137 LKAAWKTYQPK------VTVQHILTSDESTAKQVISDLAAGKDFTTLAKTYSIDTSTKDK 190

Query: 313 G----SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           G      S     D +  D+ + L K G++T   +  + GY +  +  IK     +F + 
Sbjct: 191 GGKVSFESNSKSLDSTFKDAAYKL-KNGEYTQSPVKVTNGYEVIKM--IKHPAKGTFSDS 247

Query: 368 KKDIANQM 375
           KK +   +
Sbjct: 248 KKALTASV 255


>gi|330722348|gb|EGH00205.1| hypothetical protein imdm_1574 [gamma proteobacterium IMCC2047]
          Length = 260

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 60/163 (36%), Gaps = 17/163 (10%)

Query: 245 KIEISNDE-LQAEYEKNKEKYFSPEIRTVEQLVF-----------PNQKEADEAFQSLKK 292
           ++ + +DE  +  + +N+E + +     V  + F             ++ A E  + + +
Sbjct: 82  EVPVPDDESCERFFNENRESFATAPECEVSHIFFSAPIADHEAREAARQRASEVLEKIHQ 141

Query: 293 GKK-FIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
             + F ++A ++     + +   LG  SK      +   ++ ++ +       +    G+
Sbjct: 142 NPQCFERMARQESGCASAANGGYLGRISKGQTV-PAFETALMAMHRGDISEQPVETGGGF 200

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            I  V + +    + F+ +K  I   +      + +      L
Sbjct: 201 HIIRVDDREDGEDLPFEILKTWIRQNLINQSRQKAIDGYVNGL 243


>gi|313207040|ref|YP_004046217.1| ppic-type peptidyl-prolyl cis-trans isomerase [Riemerella
           anatipestifer DSM 15868]
 gi|312446356|gb|ADQ82711.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Riemerella
           anatipestifer DSM 15868]
 gi|315022566|gb|EFT35593.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Riemerella
           anatipestifer RA-YM]
 gi|325335523|gb|ADZ11797.1| peptidylprolyl isomerase [Riemerella anatipestifer RA-GD]
          Length = 455

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/398 (12%), Positives = 124/398 (31%), Gaps = 54/398 (13%)

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
             +   +   ++G       +   K+LS   ++          + L++       +    
Sbjct: 48  DIEQQENYARQQGAQTANRCEFLEKVLSNKLLIY-----EAKKDTLIENHSEAIKQQAEA 102

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP---EYKRIS--YILFDVHEKEKKIE 247
            Y  L  +       PS   L   + K+++++      E       Y           + 
Sbjct: 103 KYNELLAQF------PSEKELLAAY-KFRNSFEMKSAIEQIDTDQYYGQAKYQRITSGVN 155

Query: 248 ISNDELQAEYEKNKEKY--FSPEIRTVEQLVFP--NQKEADEAFQSLKK-------GKKF 296
           I+ +E+   Y   K +      EI   +  ++P   ++   +    L +       G+ F
Sbjct: 156 ITPNEVTDFYNIYKGQLPMVKDEISLAKITLYPKLTKEHQQKLIDKLNQIKKDIEGGESF 215

Query: 297 IQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            ++A    +     + G      +K  +   +   +  +L ++G+ +  I   FGY +  
Sbjct: 216 EKMARIYSEDPGSAATGGLYKNIAKGAMVK-AFEAAALNL-QEGELSKPIESEFGYHLIQ 273

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEIS---RRE 408
           +          F + +  +      T+     K++   + + +  G  +  E +     +
Sbjct: 274 LIKKSGK----FYDARHILLKAEPNTEEIAAAKKELNEIRKQIEDGKITFKEAAYKYSDD 329

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
           K    +  ++   G   + +++         +  +   D   + +            V++
Sbjct: 330 KATKFNAGVISTPGGSDRLEKLHLPANYSYQIVGLKVGDITEAFEDVADRDKKVVSIVKV 389

Query: 469 KESIPARDR------------KLEEVLTDVKKDWKTVK 494
            E IPA                LE+    V + W   K
Sbjct: 390 LEEIPAHSLDLTSDYERIKNYALEQKKGKVMEKWIVEK 427


>gi|114048893|ref|YP_739443.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
 gi|117919077|ref|YP_868269.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
 gi|113890335|gb|ABI44386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
 gi|117611409|gb|ABK46863.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
          Length = 92

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  ++++A++  + L KG  F  LA+      S      LG F +  +       
Sbjct: 6   AAVHILVKHKEQAEDIIKQLNKGANFGALAKRYSSCPSAKKGGDLGEFKRGQMV-PQFDK 64

Query: 328 SIFSLAKKGDFTPVI--HGSFGYVIAHV 353
             FS    G+          FG+ +  V
Sbjct: 65  VAFS----GELLVPHLVKTKFGWHVVKV 88


>gi|300985812|ref|ZP_07177604.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
 gi|300407963|gb|EFJ91501.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
          Length = 93

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67

Query: 331 S---LAKKGDFTPVIHGSFGYVIAHV 353
           S   L   G      H  FGY I  V
Sbjct: 68  SCPVLEPTGSL----HTQFGYHIIKV 89


>gi|314934005|ref|ZP_07841370.1| foldase protein PrsA [Staphylococcus caprae C87]
 gi|313654155|gb|EFS17912.1| foldase protein PrsA [Staphylococcus caprae C87]
          Length = 333

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 69/188 (36%), Gaps = 41/188 (21%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---- 283
           E K++S           K+++S+  ++               +    ++   + ++    
Sbjct: 114 EQKKLSAY--QKQLLLDKVKVSDKNIKDN------------SKKASHILIKVKSKSSDKE 159

Query: 284 -----------DEAFQSLKKGKK-FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLAD 327
                      ++  + ++K    F ++A+++    S    D SLG   K  + D S   
Sbjct: 160 GLSDKKAKEKAEKIQKEVEKNPSKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVD-SFEK 218

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           ++F L K+G  + V+   +GY I             F + K ++  ++   K  +K K  
Sbjct: 219 ALFKL-KEGQVSKVVKTDYGYHIIKADKEN-----DFNKEKSNLKEKIIEQKVQKKPKLL 272

Query: 388 YKRLEEFL 395
               ++ L
Sbjct: 273 TDAYKDLL 280


>gi|257095903|ref|YP_003169544.1| nitrogen fixation protein NifM [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048427|gb|ACV37615.1| nitrogen fixation protein NifM [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 277

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 62/168 (36%), Gaps = 18/168 (10%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------- 278
           + +               +S+ +++  +  N++++   E R +  L+             
Sbjct: 100 RDLVVEAVLERVAAAAAPVSDTDVEIFWYMNQQRFRHGETRVLRHLLVTINENLAGNERQ 159

Query: 279 -NQKEADEAFQSL-KKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLA 333
             +   +     L ++ ++F + A +      ++    LG   +  +    +  + F+LA
Sbjct: 160 TARARIEAIRARLLREPQRFAEQALKHSECPTAVHGGLLGRVPRGQLY-PQVDAAAFTLA 218

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           + G  + VI    GY +     I+    +SF E ++ I   +   + +
Sbjct: 219 E-GMLSEVIESELGYHLIRCEAIQHERLLSFAEARQTIREHLDGQQQA 265


>gi|323336931|gb|EGA78188.1| Ess1p [Saccharomyces cerevisiae Vin13]
          Length = 190

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLAEEQGKSLS---D 309
           K+K+    P     E +    Q   DE    +       K   F  LA+E+    S    
Sbjct: 88  KHKDS-RRPASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSYKRG 146

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LG F +  +   S  D+ F L K G+ + ++    G  +  
Sbjct: 147 GDLGWFGRGEM-QPSFEDAAFQL-KVGEVSDIVESGSGVHVIK 187


>gi|151945094|gb|EDN63345.1| PPIase [Saccharomyces cerevisiae YJM789]
 gi|190409503|gb|EDV12768.1| ESS1 protein [Saccharomyces cerevisiae RM11-1a]
 gi|256269534|gb|EEU04819.1| Ess1p [Saccharomyces cerevisiae JAY291]
          Length = 170

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLAEEQGKSLS---D 309
           K+K+    P     E +    Q   DE    +       K   F  LA+E+    S    
Sbjct: 68  KHKDS-RRPASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSYKRG 126

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LG F +  +   S  D+ F L K G+ + ++    G  +  
Sbjct: 127 GDLGWFGRGEM-QPSFEDAAFQL-KVGEVSDIVESGSGVHVIK 167


>gi|854592|emb|CAA60941.1| ESS1 [Saccharomyces cerevisiae]
 gi|1015652|emb|CAA89541.1| ESS1 [Saccharomyces cerevisiae]
          Length = 190

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLAEEQGKSLS---D 309
           K+K+    P     E +    Q   DE    +       K   F  LA+E+    S    
Sbjct: 88  KHKDS-RRPASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSYKRG 146

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LG F +  +   S  D+ F L K G+ + ++    G  +  
Sbjct: 147 GDLGWFGRGEM-QPSFEDAAFQL-KVGEVSDIVESGSGVHVIK 187


>gi|37362669|ref|NP_012551.2| Ess1p [Saccharomyces cerevisiae S288c]
 gi|78099772|sp|P22696|ESS1_YEAST RecName: Full=Peptidyl-prolyl cis-trans isomerase ESS1;
           Short=PPIase ESS1; AltName: Full=Parvulin ESS1; AltName:
           Full=Processing/termination factor 1
 gi|758286|emb|CAA59961.1| Processing/Termination Factor 1 [Saccharomyces cerevisiae]
 gi|285812911|tpg|DAA08809.1| TPA: Ess1p [Saccharomyces cerevisiae S288c]
          Length = 170

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLAEEQGKSLS---D 309
           K+K+    P     E +    Q   DE    +       K   F  LA+E+    S    
Sbjct: 68  KHKDS-RRPASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSYKRG 126

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LG F +  +   S  D+ F L K G+ + ++    G  +  
Sbjct: 127 GDLGWFGRGEM-QPSFEDAAFQL-KVGEVSDIVESGSGVHVIK 167


>gi|1097162|prf||2113292A processing/termination factor
          Length = 170

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLAEEQGKSLS---D 309
           K+K+    P     E +    Q   DE    +       K   F  LA+E+    S    
Sbjct: 68  KHKDS-RRPASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSYKRG 126

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LG F +  +   S  D+ F L K G+ + ++    G  +  
Sbjct: 127 GDLGWFGRGEM-QPSFEDAAFQL-KVGEVSDIVESGSGVHVIK 167


>gi|323354333|gb|EGA86173.1| Ess1p [Saccharomyces cerevisiae VL3]
          Length = 190

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 12/103 (11%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLAEEQGKSLS---D 309
           K+K+    P     E +    Q   DE    +       K   F  LA+E+    S    
Sbjct: 88  KHKDS-RRPASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSYKRG 146

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LG F +  +   S  D+ F L K G+ + +     G  +  
Sbjct: 147 GDLGWFGRGEM-QPSFEDAAFQL-KVGEVSDIXESGSGVHVIK 187


>gi|148973943|ref|ZP_01811476.1| peptidyl-prolyl cis-trans isomerase C [Vibrionales bacterium
           SWAT-3]
 gi|145965640|gb|EDK30888.1| peptidyl-prolyl cis-trans isomerase C [Vibrionales bacterium
           SWAT-3]
          Length = 92

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++  + LKKG KF  LA++     S      LG F K  +         F
Sbjct: 9   HILVKHKEQAEDIIKQLKKGAKFQTLAKKHSTCPSGKKGGDLGEFQKGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GETLVPHLVKTKFGWHVVKV 88


>gi|301166280|emb|CBW25855.1| putative peptidyl-prolyl cis-trans isomerase [Bacteriovorax marinus
           SJ]
          Length = 100

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFS 316
            K  + S        ++  + ++A    + L++G+ F +LA+E      S     LG F 
Sbjct: 3   EKRMHKSLARYRARHILLEDVEDAQYVLEKLQQGEDFGELAKELSECNSSQKGGDLGLFV 62

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
              +    +  +I+ L K  + +  +   +G+ I  
Sbjct: 63  SGQVA-PEVERAIYHL-KIDEISEPVESEYGFHIIQ 96


>gi|332531965|ref|ZP_08407849.1| peptidyl-prolyl cis-trans isomerase PpiC [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038592|gb|EGI75035.1| peptidyl-prolyl cis-trans isomerase PpiC [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 93

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
              ++  ++ +  +    +++G+ F +LA+            +LG F    +        
Sbjct: 6   ARHILVDSEAQCLDLKTKIEQGEDFAELAKAHSNCPSGQDGGALGEFGPGMMV-PEFDKV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +FS          +   FGY +  V++   
Sbjct: 65  VFSAPIN-QVQGPVQTQFGYHLLEVTSRSE 93


>gi|47211406|emb|CAF94222.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 129

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     ++ EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 37  KVRHILCEKLGKSMEAMEKLKAGVRFSEVATQYSEDKARQGGDLGWMTRGSMVGP-FQEA 95

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L      K     P +   FGY I  V   K
Sbjct: 96  AFALPISSMDKPVYTDPPVKTKFGYHIIMVEGKK 129


>gi|300728335|ref|ZP_07061700.1| peptidyl-prolyl cis-trans isomerase family protein [Prevotella
           bryantii B14]
 gi|299774400|gb|EFI71027.1| peptidyl-prolyl cis-trans isomerase family protein [Prevotella
           bryantii B14]
          Length = 486

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 84/260 (32%), Gaps = 42/260 (16%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV- 239
             ++ +    ++D I +    V       +  +  W +      +  EY++++       
Sbjct: 105 AIQKLFLHQAAIDSIEVTESEVSQGI---DDQINYWIQLIGSREKLEEYRKMTITQIRQQ 161

Query: 240 ---------------HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKE 282
                           E  K I+++  +++A ++        F P    V+ +    +  
Sbjct: 162 MHDDFKNQQLIRKEREELVKDIKVTPAQVRAYFKNLPEDSIPFVPTEVEVQVITRQPKIS 221

Query: 283 ADEAF----------QSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLAD 327
            DE            + +  G+  F  LA    E+ G +     LG   +  + D + A+
Sbjct: 222 KDETERIKEQLRDFTKRVNDGETSFSTLARLYSEDPGSARQGGELGYIGRGML-DPAFAN 280

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
             F+L      + ++   FG+ I  + + +          +  +       +A +     
Sbjct: 281 VAFNLTDPKKISKIVETEFGFHIIQLIDKRGDKI----NCRHILLKPTVSEEALQSASLR 336

Query: 388 YKRL-EEFLALGTSMDEISR 406
              + ++  A   S +  + 
Sbjct: 337 LDSIADDIRANKFSFESAAS 356


>gi|168467674|ref|ZP_02701511.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195629962|gb|EDX48622.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 93

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIF 330
            ++   +K A +  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                 + T  +H  FGY I  V   K
Sbjct: 68  FCPVL-EPTGPLHTQFGYHIIKVLYRK 93


>gi|317475723|ref|ZP_07934982.1| ppic-type ppiase domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908106|gb|EFV29801.1| ppic-type ppiase domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 541

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/429 (13%), Positives = 114/429 (26%), Gaps = 47/429 (10%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEAFQSL 290
           +Y    V         ++   +  Y++ K ++   ++R V  +    P    +D    ++
Sbjct: 116 NYRARLVESYLTDTVEADAAARRWYDRMKARHRGGQVR-VRHIFKYLPQNVSSDALRDAV 174

Query: 291 KKGKKFIQLAEEQGKS---------LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
            +     +   +              SD     +       V   D  F L   G  +  
Sbjct: 175 ARMDSIHEYLRKNPGDNAFNACVERFSDDKRSLWVSWLQMPVEFEDVAFELP-VGGVSQP 233

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
                G  I  V   +      F++VK +I  +    +A   V+   ++L++        
Sbjct: 234 FFTPQGIHIVKVLERRE--LPPFEKVKDEIMARQSRHEADRGVEVQVEKLKKEYRYTPDK 291

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKE----VAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
             +            L   AG+   G +     AA P   +     F     L  ++T  
Sbjct: 292 AGVDELTNSGHTSRTLFTLAGRSYTGTDFARFAAAYPAGVRKQLDAFIVKTVLDYENTCL 351

Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA-------NQLVLEY 510
                 +   ++                + K+ +     +E   KA       +    E 
Sbjct: 352 EQKYPDLRCLVQNYKEQALL-----KKIIDKEIRKRAATDEAGLKAYFEKHRSDYQWEER 406

Query: 511 SKEGKNFRDIGKNL---------GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
              G     + K +                    R+             Q    P +   
Sbjct: 407 RYRGIVLHGVSKRVVKQARKFLKSLPEEEWKDAIRLTFNAGAQPQIQTEQGVFAPGDNAY 466

Query: 562 ----CFPIENGLSYVVFKVTNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
                F  ++    V F  T     KV    +  +    L       L    +  L+S  
Sbjct: 467 VDDLVFKGKDATPLVSFPFTAVLGKKVKGPDDYQEVKDRLVADYQTYLDGRWVDRLRSSA 526

Query: 615 SVTVHDNLI 623
            V ++  ++
Sbjct: 527 KVEINQEVL 535


>gi|241896492|ref|ZP_04783788.1| peptidylprolyl isomerase [Weissella paramesenteroides ATCC 33313]
 gi|241870214|gb|EER73965.1| peptidylprolyl isomerase [Weissella paramesenteroides ATCC 33313]
          Length = 353

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 64/190 (33%), Gaps = 29/190 (15%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI--------------SNDE 252
             S   +   +   K  Y +   + +S            + I              SN +
Sbjct: 71  KVSKKSIESQYNDAKSQYGSQFSQVLSQNGMTEDSFRDSLRIQALEKQAVIADKHYSNKQ 130

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L   Y++ + K       +V  ++  ++ +A +    L KG  F +LA+E+    +    
Sbjct: 131 LHKAYKEYQPK------VSVSVILTSSEDDAKKIIAQLDKGGDFAKLAKEKSIDTNTKKN 184

Query: 313 G-----SFSKEYIPDVSLADSIFSLAKKGDFTPVIH--GSFGYVIAHVSNIKPSFTVSFQ 365
           G       S +   +     + F L K       +    S GY I  +++   S   SF 
Sbjct: 185 GGKMTSFDSTDTNLEDDFKTAAFKLKKGEYTKTPVKSTSSQGYFIIKMNS--KSDKKSFS 242

Query: 366 EVKKDIANQM 375
            +K  + + +
Sbjct: 243 ALKSKMKSIL 252



 Score = 36.9 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 13/117 (11%)

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
           L N++    LD   +  G +     +  +       +          F   L++ G+ E 
Sbjct: 55  LANMIIQKVLD---KKYGDKVSKKSIESQ-------YNDAKSQYGSQFSQVLSQNGMTED 104

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
            + D               +     SN  L +A + Y    SV  I+ ++       
Sbjct: 105 SFRDSLRIQALEKQ---AVIADKHYSNKQLHKAYKEYQPKVSVSVILTSSEDDAKKI 158


>gi|196015559|ref|XP_002117636.1| hypothetical protein TRIADDRAFT_51090 [Trichoplax adhaerens]
 gi|190579805|gb|EDV19894.1| hypothetical protein TRIADDRAFT_51090 [Trichoplax adhaerens]
          Length = 130

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA   LK+G  F Q+A +  +  +     LG  ++  +      ++
Sbjct: 38  KVRHILCEKHSKVMEAMAKLKEGIAFNQVATQYSEDKARQGGDLGWMTRGSMVGP-FQEA 96

Query: 329 IFSLAKKGDFT-----PVIHGSFGYVIAHVSNIK 357
            F+L      +     P +   FGY I  +   K
Sbjct: 97  AFNLEPSTVASPSYTDPPVKTKFGYHIIMIEGKK 130


>gi|313241741|emb|CBY33960.1| unnamed protein product [Oikopleura dioica]
          Length = 142

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 258 EKNKEKYFSPEI-RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGS 314
           EK   K  +P     V  ++   Q +  EA   LK+G+ F  +A    +    S  SLG 
Sbjct: 36  EKPVAKSAAPARSINVRHILCEKQSKVLEAMGKLKEGQAFNTVATNYSEDKARSGGSLGW 95

Query: 315 FSKEYIPDVSLADSIFSL-----AKKGDFTPVIHGSFGYVIAHVSNIK 357
             +  +      ++ F L     +      P +   FGY I  +   K
Sbjct: 96  LLRGTMVGP-FQEAAFQLPISTCSNPSYTDPPVKTKFGYHIIMIEGKK 142


>gi|160882392|ref|ZP_02063395.1| hypothetical protein BACOVA_00341 [Bacteroides ovatus ATCC 8483]
 gi|237719065|ref|ZP_04549546.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4]
 gi|260172001|ref|ZP_05758413.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D2]
 gi|293369504|ref|ZP_06616083.1| PPIC-type PPIASE domain protein [Bacteroides ovatus SD CMC 3f]
 gi|299148148|ref|ZP_07041210.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           3_1_23]
 gi|315920314|ref|ZP_07916554.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156112205|gb|EDO13950.1| hypothetical protein BACOVA_00341 [Bacteroides ovatus ATCC 8483]
 gi|229451444|gb|EEO57235.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4]
 gi|292635389|gb|EFF53902.1| PPIC-type PPIASE domain protein [Bacteroides ovatus SD CMC 3f]
 gi|298512909|gb|EFI36796.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           3_1_23]
 gi|313694189|gb|EFS31024.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 460

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 93/288 (32%), Gaps = 30/288 (10%)

Query: 240 HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEAFQ--------- 288
            +    I+++  E++  ++        + P    V+ +    +    E            
Sbjct: 146 QKLAGDIKVTPAEVRRYFKDLPQDSIPYIPTQVEVQIITLQPKIPVSEIEDVKRTLRDYT 205

Query: 289 -SLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             + KG+  F  LA    E++  ++     G   +  + D + A+  FSL      + ++
Sbjct: 206 DRVTKGEIDFSTLARLYSEDKASAIKGGECGFMGRG-MMDPAYANVAFSLQDPKKVSKIV 264

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
              FG+ I  +   +     +   +   +  ++   + +E         ++  A   + D
Sbjct: 265 ESEFGFHIIQLIEKRGDRVNTRHIL---LRPKVSEKELTEACARLDSIADDIRANKFTFD 321

Query: 403 EIS-------RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
           + +              I + + + +G      ++  +P     +       +       
Sbjct: 322 DAAAVISQDKDTRNNHGIMVNINEHSGITTSKFQMQDLPQDVAKVVDKMNVGEISKAFTM 381

Query: 456 VALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
           +   DG  +   V++K  I      + E   D+K+     +  E +  
Sbjct: 382 INEKDGKEVCAIVKLKTKINGHKATIAEDYQDLKEIVMDKRREEVLQK 429


>gi|167033456|ref|YP_001668687.1| SurA domain-containing protein [Pseudomonas putida GB-1]
 gi|166859944|gb|ABY98351.1| SurA domain [Pseudomonas putida GB-1]
          Length = 213

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 7/147 (4%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
              V   ++        + + L    + +  + N    +   L  + LD L+    L Q 
Sbjct: 22  AARVNGVEIELLRLERYFSEYLDAQGRAVTSIRNPGLYKR--LRDQALDELIDKELLWQE 79

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            +  G+     RV   +       G     S  VF  RLA  G +  +Y ++  + ++  
Sbjct: 80  AQRQGIAVSDERVSAHVGEVEAAFG-----SPAVFERRLAEAGFDRAQYTEYTRQDMAAQ 134

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFEN 189
            V         PS   ++       E 
Sbjct: 135 QVYAQLSAVDAPSQGEVEAFYDANKER 161


>gi|330881719|gb|EGH15868.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 256

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 76/287 (26%), Gaps = 73/287 (25%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +  S      + E+     K G  V    A    L  ++LD L+     
Sbjct: 33  DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 87

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E  G+      +   I        + N  S + F + LA +G++  +  +   + +
Sbjct: 88  LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 143

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             + V                       + R           V      S   +  +   
Sbjct: 144 IISRV----------------------RQRR-----------VAERIQVSQQEVKNFLAS 170

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            +   +  E   ++ IL    +      I    ++                         
Sbjct: 171 DQGKAQLSEKFHLANILIATPDSASSDAIQAAAVK------------------------- 205

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDV 323
              A   +  LKKG  F +LA        +L    +G      +P  
Sbjct: 206 ---AKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPP 249


>gi|308051066|ref|YP_003914632.1| peptidylprolyl isomerase [Ferrimonas balearica DSM 9799]
 gi|307633256|gb|ADN77558.1| Peptidylprolyl isomerase [Ferrimonas balearica DSM 9799]
          Length = 428

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 78/239 (32%), Gaps = 23/239 (9%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-- 277
               YR    + I+       + +++++IS  E+    E   E+        V  ++   
Sbjct: 125 NYAAYREQIRREITIGQVQRIQVQRRVQISPQEINTLVEMINEQGLQDAEFHVGHILIDF 184

Query: 278 -----PNQKEADEAFQSLKKGKKFIQ--LAEEQG-KSLSDISLGSFSKEYIPDVSLADSI 329
                  +  AD+  + L+ G  F Q  LA   G K+L     G  +   +P  +L   +
Sbjct: 185 GGDETAARARADKVLELLEGGADFAQTALAASSGPKALEGGDWGFMNINEMP--TLFAEV 242

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRITKASEKV 384
              AKKGD    I    G+ I  + + +        EV         +  +    A   +
Sbjct: 243 VKDAKKGDIIGPIKSGAGFHIITIYDTRGQEVQEVAEVNARHILLKPSPILSEDMAKTLL 302

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
            E    +++         E++R     S D       G          +P     L R+
Sbjct: 303 DEFMADVKD---GKADFGELAREH---SDDPGSAARGGDLGWADPNMYVPAFRDTLARL 355



 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 47/151 (31%), Gaps = 10/151 (6%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    +  S         +   + + G  + S+ A    L  +++D L++ +  
Sbjct: 27  DEVAVLVNDGVILKSEIDERMTS-VKRGALQAGQQLPSDAA----LRTQVIDRLIAESLQ 81

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E +GL     ++   +       G     +       +  +G N   Y +   + +
Sbjct: 82  LQMAERMGLVISDIQLDQTLENMAREQG----MTLQGLRQEIESDGTNYAAYREQIRREI 137

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN 189
           +   V        ++ S   ++       E 
Sbjct: 138 TIGQVQRIQVQRRVQISPQEINTLVEMINEQ 168


>gi|264680840|ref|YP_003280750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
 gi|262211356|gb|ACY35454.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
          Length = 475

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 10/148 (6%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +  +      ++    ++++ G + +        L +++L+ L+      Q 
Sbjct: 73  VAVVNSEPITNNEVRARMERVAQNVTEQGGQLPS-----QSELARQVLERLIVERVQLQE 127

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            +D G+  D+  V   +A       + N       VSRL  EGI+E ++       +   
Sbjct: 128 AKDTGINIDNMTVDQAVANV----ARQNNTDKAGLVSRLKAEGISEAQFRSEIRNQMLMQ 183

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENR 190
            V    V G R      D  +    + R
Sbjct: 184 RVRERDVDG-RVKVGEADIDRYLKDQKR 210



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 16/136 (11%)

Query: 269 IRTVEQLVFPNQK---EADEAFQ------SLKKG-KKFIQLAEEQGKSLS---DISLGSF 315
                 ++        EA  A +       ++ G   F QLA+E  K  S      LG  
Sbjct: 330 QNHARHILLTVGDGMTEAQAAKRLEDYKRRVEAGQATFQQLAQEFSKDGSARNGGDLGWS 389

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           S            + +L + G  +  +   FG  +  +   +       ++ ++ + N +
Sbjct: 390 SPGQFV-PEFERVLDNL-QPGQISNPVVSRFGVHLIQLIERRQEKLTEREQ-REMVRNVV 446

Query: 376 RITKASEKVKEDYKRL 391
           R  KA +  +   K L
Sbjct: 447 RERKAEQDYETWLKEL 462



 Score = 38.0 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 94/308 (30%), Gaps = 38/308 (12%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPN 279
             +R+    ++        + + ++++   ++    +  K      +     +  ++   
Sbjct: 170 AQFRSEIRNQMLMQRVRERDVDGRVKVGEADIDRYLKDQKRPGDAAAGAAANLGHILITV 229

Query: 280 QKEADEAFQS------------LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
            + A  A  +             +K   FI    E     +    G+     + D   L 
Sbjct: 230 PENASPAVVAEREAKAKQAAEAARKNPDFIAAVREFSDVPNGQGGGAMGMRPMSDYPELF 289

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF---QEVKK---DIANQMRITKA 380
                 +  G          G+ +  V     +    +      +     + + M   +A
Sbjct: 290 SQQVGNSAVGAIVGPFRSGAGFHVLKVLEKSQAGAPVYITQNHARHILLTVGDGMTEAQA 349

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
           ++++++  +R+E   A   +  ++++               G          +P  E++L
Sbjct: 350 AKRLEDYKRRVE---AGQATFQQLAQEFS----KDGSARNGGDLGWSSPGQFVPEFERVL 402

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEE 498
             +        +   ++ P  S   V + + I  R  KL   E    V+   +  K  ++
Sbjct: 403 DNL--------QPGQISNPVVSRFGVHLIQLIERRQEKLTEREQREMVRNVVRERKAEQD 454

Query: 499 VSSKANQL 506
             +   +L
Sbjct: 455 YETWLKEL 462


>gi|145590048|ref|YP_001156645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048454|gb|ABP35081.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 484

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/434 (10%), Positives = 112/434 (25%), Gaps = 93/434 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V    +            + ++ ++      ++      L K IL+ L+     
Sbjct: 46  DGVAAVVNTGYITRKDID----DRIAVLKKQ-----GTKLPEGEALRKVILERLILEKIQ 96

Query: 100 DQFIEDIGLEADHGRVWGEIARSPL----------FHGKDNKFSHDVFVSRLAR----EG 145
            Q  E  G       +   IA +               + +  S + +  +L        
Sbjct: 97  LQNAEQEGFYVSSKELDKIIADTAAKNKLTFVELKAKIEASSTSFEKYKQQLREEVIVSR 156

Query: 146 INEKE--------------YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK-------- 183
             E+E              +I    + +              P  + + Q          
Sbjct: 157 YREREVDAKIKISDAEIDNFISERNRAMLSGVTRPSPSANGGPEEIDVAQIFIPVDSGAG 216

Query: 184 -------------RFYFENRSVDYIVLNNRHVPAIADPSNAVL---------TQWFEKYK 221
                                VD++ L               L           ++E  +
Sbjct: 217 AGAQADAKKKADLLLREAKGDVDFLQLGAMAAKDNPQIKFQELGYRPPDRLPQLFYEAVR 276

Query: 222 DNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
           +           ++P    +   + D                 E      +  +      
Sbjct: 277 NTGSGQVAGAVVKSPAGYHV-LKVLDRRSMAAGSPPPAQAAPQEPASTTPQNIAITQTNA 335

Query: 273 EQLVFPN-----QKEADEAFQSL-----KKGKKFIQLAEEQ---GKSLSDISLGSFSKEY 319
             ++  N      ++A+   Q        K   F  LA++    G + +  +LG      
Sbjct: 336 RHILLRNRPGLSDQDAERRLQGYRDQVRAKTADFGDLAKKYSEDGSASNGGNLGWMGPGD 395

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           +       ++  L + G+ +  +   FG+ +  V   + +  ++ ++ ++     +R  K
Sbjct: 396 LV-PEFELAMNKL-QIGEVSNPVKTEFGWHLIQVIERREAQ-LTVEKQREFARAAIRSRK 452

Query: 380 ASEKVKEDYKRLEE 393
             +  ++  + L +
Sbjct: 453 FEQAYQDWMRELRD 466



 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/407 (13%), Positives = 117/407 (28%), Gaps = 55/407 (13%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             +L +  +      G   S+  LD+          + ++ L  +   +           
Sbjct: 89  RLILEKIQLQNAEQEGFYVSSKELDKIIADTAAKNKLTFVELKAKIEASSTS-------- 140

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS--------- 266
            FEKYK   R      +    +   E + KI+IS+ E+     +      S         
Sbjct: 141 -FEKYKQQLRE----EVIVSRYREREVDAKIKISDAEIDNFISERNRAMLSGVTRPSPSA 195

Query: 267 ---PEIRTVEQLVFPN------------QKEADEAFQSLKKGKKFIQL---AEEQGKSLS 308
              PE   V Q+  P             +K+AD   +  K    F+QL   A +    + 
Sbjct: 196 NGGPEEIDVAQIFIPVDSGAGAGAQADAKKKADLLLREAKGDVDFLQLGAMAAKDNPQIK 255

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK---PSFTVSFQ 365
              LG    + +P +   +++ +         V+    GY +  V + +          Q
Sbjct: 256 FQELGYRPPDRLPQL-FYEAVRNTGSGQVAGAVVKSPAGYHVLKVLDRRSMAAGSPPPAQ 314

Query: 366 EVKKDIANQMRITKASEKVKEDY----------KRLEEFLALGTSMDEISRREKIVSIDL 415
              ++ A+      A  +    +           +  E    G      ++      +  
Sbjct: 315 AAPQEPASTTPQNIAITQTNARHILLRNRPGLSDQDAERRLQGYRDQVRAKTADFGDLAK 374

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
              +       G      P      F +      + +       +  +  +Q+ E   A+
Sbjct: 375 KYSEDGSASNGGNLGWMGPGDLVPEFELAMNKLQIGEVSNPVKTEFGWHLIQVIERREAQ 434

Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
              +E+     +   ++ K  +       +L    + +  N  D   
Sbjct: 435 L-TVEKQREFARAAIRSRKFEQAYQDWMRELRDTATVKILNVEDAAT 480


>gi|299142782|ref|ZP_07035911.1| ppic-type ppiase domain-containing protein [Prevotella oris C735]
 gi|298575811|gb|EFI47688.1| ppic-type ppiase domain-containing protein [Prevotella oris C735]
          Length = 477

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/400 (14%), Positives = 121/400 (30%), Gaps = 66/400 (16%)

Query: 250 NDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKF 296
             E +  Y   + +  S   +  V  ++    + A            D  +++LK G  F
Sbjct: 111 EAEARRIYTLTQHQVDSLGGMVKVRHILLELGQRAPKSTETEVKQRIDSIYKALKAGADF 170

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            ++A +        S G       P           + L KKG+ +       GY I  +
Sbjct: 171 SEMARKYSDDKGSASAGGSLPWLQPGQTLPEFEAQAYRL-KKGEMSLPFLSPAGYHIILL 229

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            +   S  + +  ++ DI   +      +K+ +D        A  T    + ++   +  
Sbjct: 230 ED--KSNFLPYDSLRNDILCFIDQRNLRDKLIDDRLNERAQAAHTTPAAILEKQRMELEK 287

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL-------SKDHTVALPDGSYMWV 466
           + P + +  ++     +        +  +    +  L        K +  + P    +  
Sbjct: 288 NDPSLKYLIQEYHDGLLLFEISNRTIWEKAARDEAGLIDYFNHNKKKYRWSSPRYKGVVF 347

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
            +KE          +V   V K  K V                      +F   G  L  
Sbjct: 348 HVKEV--------SDVK-KVTKALKKV----------------------DFEKWGSILEK 376

Query: 527 SLLTTNQINRMDNENKFFGYDGI---SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
                 +I     +  F   D     S++F          P+++   Y    V   K+  
Sbjct: 377 QFNQNGEIRVKAEKGIFKQGDNAWIDSEIF---KHGTSPAPLKD---YPFSGVCGKKLKA 430

Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
            +        +     + +    I  L+++Y V+++ N++
Sbjct: 431 PKTMSDVRKQVLSDYQEAMEQQWIKDLRAKYPVSINQNIL 470


>gi|302406618|ref|XP_003001145.1| peptidyl-prolyl cis-trans isomerase PIN4 [Verticillium albo-atrum
           VaMs.102]
 gi|261360403|gb|EEY22831.1| peptidyl-prolyl cis-trans isomerase PIN4 [Verticillium albo-atrum
           VaMs.102]
          Length = 131

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFS 316
           K+  K    +   V  ++     + +EA   ++ G KF  +A E  +  +    SLG  S
Sbjct: 21  KDTSKVKGAQSINVRHILCEKHGKKEEALAKIRDGAKFDDVAREFSEDKARQGGSLGWKS 80

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPV---IHGSFGYVIAHV 353
           +  + D +  +  F L      +P        FGY I  V
Sbjct: 81  RGSL-DPAFEEVAFGLEASSTGSPKWGEAKTGFGYHIIMV 119


>gi|207722835|ref|YP_002253270.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum MolK2]
 gi|206588019|emb|CAQ18600.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum MolK2]
          Length = 278

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 70/237 (29%), Gaps = 27/237 (11%)

Query: 159 LSRTDVVGMF-VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
           +++  +       G   +  ++   K+              N           AV     
Sbjct: 41  ITQAQLDRAVAQTGAGANPNVVQALKQQLIARELFRQQAAKNPAYDKQPAVQQAV----- 95

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
                     E    +     + +  K + +++++++A Y+         E +    +  
Sbjct: 96  ---------KETHDAAITQLWLKDNIKPVPVTDEQVKARYDAIVASLGDKEYK-ARVIQV 145

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLA 326
            +   A +    LK+G  F +LA++   + +    G              K     + LA
Sbjct: 146 GDDVTASQVIAQLKQGGDFAKLAQQYSTAPNKARGGEMDWVSFKVPLEEGKTQNMPLPLA 205

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             I +L         +       I  V +++P+   +F  VK  I   +   +    
Sbjct: 206 REISTLQPGAVSAAPVEAGSQRFIVKVDSVRPTQVPAFDAVKPAIRQALETAELERA 262


>gi|299531915|ref|ZP_07045315.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
 gi|298720090|gb|EFI61047.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
          Length = 475

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 10/148 (6%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +  +      ++    ++++ G + +        L +++L+ L+      Q 
Sbjct: 73  VAVVNSEPITNNEVRARMERVAQNVTEQGGQLPS-----QSELARQVLERLIVERVQLQE 127

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            +D G+  D+  V   +A       + N       VSRL  EGI+E ++       +   
Sbjct: 128 AKDTGINIDNMTVDQAVANV----ARQNNTDKAGLVSRLKAEGISEAQFRSEIRNQMLMQ 183

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENR 190
            V    V G R      D  +    + R
Sbjct: 184 RVRERDVDG-RVKVGEADIDRYLKDQKR 210



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 16/136 (11%)

Query: 269 IRTVEQLVFPNQK---EADEAFQ------SLKKG-KKFIQLAEEQGKSLS---DISLGSF 315
                 ++        EA  A +       ++ G   F QLA+E  K  S      LG  
Sbjct: 330 QNHARHILLTVGDGMTEAQAAKRLEDYKRRVEAGQATFQQLAQEFSKDGSARNGGDLGWS 389

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           S            + +L + G  +  +   FG  +  +   +       ++ ++ + N +
Sbjct: 390 SPGQFV-PEFERVLENL-QPGQISNPVVSRFGVHLIQLIERRQEKLTEREQ-REMVRNVV 446

Query: 376 RITKASEKVKEDYKRL 391
           R  KA +  +   K L
Sbjct: 447 RERKAEQDYETWLKEL 462



 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 94/308 (30%), Gaps = 38/308 (12%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPN 279
             +R+    ++        + + ++++   ++    +  K      +     +  ++   
Sbjct: 170 AQFRSEIRNQMLMQRVRERDVDGRVKVGEADIDRYLKDQKRPGDAAAGAAANLGHILITV 229

Query: 280 QKEADEAFQS------------LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
            + A  A  +             +K   FI    E     +    G+     + D   L 
Sbjct: 230 PENASPAVVAEREAKAKQAAEAARKNPDFIAAVREFSDVPNGQGGGAMGMRPMSDYPELF 289

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF---QEVKK---DIANQMRITKA 380
                 +  G          G+ +  V     +    +      +     + + M   +A
Sbjct: 290 SQQVGNSAVGAIVGPFRSGAGFHVLKVLEKSQAGAPVYITQNHARHILLTVGDGMTEAQA 349

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
           ++++++  +R+E   A   +  ++++               G          +P  E++L
Sbjct: 350 AKRLEDYKRRVE---AGQATFQQLAQEFS----KDGSARNGGDLGWSSPGQFVPEFERVL 402

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEE 498
             +        +   ++ P  S   V + + I  R  KL   E    V+   +  K  ++
Sbjct: 403 ENL--------QPGQISNPVVSRFGVHLIQLIERRQEKLTEREQREMVRNVVRERKAEQD 454

Query: 499 VSSKANQL 506
             +   +L
Sbjct: 455 YETWLKEL 462


>gi|228472041|ref|ZP_04056809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276653|gb|EEK15366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 451

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 89/264 (33%), Gaps = 48/264 (18%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           V       ++ S+  +         NR +D++V     +  + D        ++ K  + 
Sbjct: 80  VSQAIQDSIKISDNDIRDGV-----NRRIDFLVEQLGDIKKVVD--------FYHKDDEQ 126

Query: 224 YRAPEYKRI----SYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS-PEIRTVEQLVF 277
               E   I            +  + IE++ +E++  + K  K++  +      + Q+V 
Sbjct: 127 SLRDELFEILRQNELSSRMKAKIVENIEVTPEEVKQFFNKIPKDELPTIGTELEIAQIVI 186

Query: 278 PNQK---EADEAFQSLK--------KGKKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSL 325
             +    E D+  + LK         G  F   A        +     +F+++       
Sbjct: 187 EPKAPQSEIDKVIEQLKEIKKDVLENGTSFSTKAILYSADRATGGKELTFNRKSSFAKEF 246

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-------------SFQEVKKDIA 372
            D  FSL ++G+ +      FG+ I  V  I+                  S +E KK I 
Sbjct: 247 KDVAFSL-QEGEISDPFKTDFGWHILQVVKIRGKEVSVRHILMVPQIPQNSLEEAKKKI- 304

Query: 373 NQMRITKASEK--VKEDYKRLEEF 394
           N +R    +++    E  K   + 
Sbjct: 305 NDIRDKIINKEFTFAEAAKNFSDE 328


>gi|59713880|ref|YP_206655.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Vibrio fischeri
           ES114]
 gi|197337353|ref|YP_002158333.1| peptidyl-prolyl cis-trans isomerase C [Vibrio fischeri MJ11]
 gi|59482128|gb|AAW87767.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Vibrio fischeri
           ES114]
 gi|197314605|gb|ACH64054.1| peptidyl-prolyl cis-trans isomerase C [Vibrio fischeri MJ11]
          Length = 92

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++  Q LKKG KF  LA++     S      LG F K  +         F
Sbjct: 9   HILVKHKEQAEDIIQQLKKGAKFHVLAKKYSSCPSGKRGGDLGEFKKGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GETLVPHLVKTKFGWHVVKV 88


>gi|325679983|ref|ZP_08159552.1| putative lipoprotein [Ruminococcus albus 8]
 gi|324108421|gb|EGC02668.1| putative lipoprotein [Ruminococcus albus 8]
          Length = 416

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 116/361 (32%), Gaps = 54/361 (14%)

Query: 45  SVGRQKVPFSSFINSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQ 101
           +V    + F  F   +   L    Q  G     +   +        +++  +      D+
Sbjct: 81  TVDGIDISFDEFRFYYFYNLDSYKQNYGVTEDALRDNQVAYNSFLSEVVRAIKQELVTDK 140

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
              + G+  D      ++  + + + K N  S + F   + R  + E+ Y     KM  R
Sbjct: 141 LAAEHGIVLDDE--DQQVVDNNMQNAKANYDSEEEFQKDMQRAHLTEEIY----KKMFVR 194

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
                  +  +  ++                ++   ++  +  I DP      Q+   ++
Sbjct: 195 AQTYNKVMSTLFAND---------------GEFATSHDDFLKMIQDP-----EQY--AHE 232

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
            +   P Y +                     L  +       Y + +    E      ++
Sbjct: 233 VHIMIPFYSQAELDDSTAEGY------DELTLSQKIGAKSAAYSALDDEAKETAKAKAKE 286

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEY---IPDVSLADSIFSLAKKG 336
            A+EA +  K G+ F +L EE G  +   D + G + K+         L D+ FSL K G
Sbjct: 287 VAEEALERAKNGEDFNKLVEEYGWDIGLEDPTKGYYMKKDNTGGYPEDLLDAAFSL-KPG 345

Query: 337 DFTP--VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT---KASEKVKEDYKRL 391
           +     V + +FGY I                V ++I + +         EK  E    +
Sbjct: 346 EVADTLVENDTFGYFIVK------RIEPDMDYVNENIDSMIASNDQPAIQEKFTEIMDAM 399

Query: 392 E 392
           E
Sbjct: 400 E 400


>gi|199599019|ref|ZP_03212426.1| peptidylprolyl isomerase [Lactobacillus rhamnosus HN001]
 gi|199590055|gb|EDY98154.1| peptidylprolyl isomerase [Lactobacillus rhamnosus HN001]
          Length = 300

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 18/160 (11%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           K ++R      I   L      +K  +++N +L+  ++  + K       TV+ ++  ++
Sbjct: 109 KSSFRQ----SIRTNLLSEVALKKLKKVTNSQLKTAWKTYQPK------VTVQHILTSDE 158

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKG 336
             A +    L  GK F  LA+      S    G      S     D +  D+ + L K G
Sbjct: 159 STAKQIISDLAAGKDFTTLAKTYSIDTSTKDKGGKVSFESSSKSLDSTFKDAAYKL-KNG 217

Query: 337 DFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           ++T   +  + GY +  +    P+   +F + KK +   +
Sbjct: 218 EYTQSPVKVTNGYEVIKMIE-HPAKG-TFSDSKKALTASV 255


>gi|301104932|ref|XP_002901550.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Phytophthora infestans T30-4]
 gi|262100554|gb|EEY58606.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Phytophthora infestans T30-4]
          Length = 148

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKK----FIQLAEEQGKSLS---DISLGSFSKEYIPDV 323
               ++ P + E DE  + L+        F +LA+E+ K  S      LGSF +  +   
Sbjct: 37  RASHILVPTETECDEILKELQAADDLESTFARLAKERSKCPSSRQGGDLGSFGRGQMV-P 95

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
                 F     G+   V    FG+ +  +++ 
Sbjct: 96  EFDTVAFE-KPVGEVHKV-KTQFGWHLVLINDR 126


>gi|223043514|ref|ZP_03613559.1| foldase protein PrsA [Staphylococcus capitis SK14]
 gi|222443002|gb|EEE49102.1| foldase protein PrsA [Staphylococcus capitis SK14]
          Length = 333

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 69/188 (36%), Gaps = 41/188 (21%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---- 283
           E K++S           K+++S+  ++               +    ++   + ++    
Sbjct: 114 EQKKLSAY--QKQLLLDKVKVSDKGIKDN------------SKKASHILIKVKSKSSDKE 159

Query: 284 -----------DEAFQSLKKGKK-FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLAD 327
                      ++  + ++K    F ++A+++    S    D SLG   K  + D S   
Sbjct: 160 GLSDKKAKEKAEKIQKEVEKNPSKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVD-SFEK 218

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           ++F L K+G  + V+   +GY I             F + K ++  ++   K  +K K  
Sbjct: 219 ALFKL-KEGQVSKVVKTDYGYHIIKADKEN-----DFNKEKSNLKEKIIEQKVQKKPKLL 272

Query: 388 YKRLEEFL 395
               ++ L
Sbjct: 273 TDAYKDLL 280


>gi|269103549|ref|ZP_06156246.1| peptidyl-prolyl cis-trans isomerase SurA [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163447|gb|EEZ41943.1| peptidyl-prolyl cis-trans isomerase SurA [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 357

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/368 (16%), Positives = 127/368 (34%), Gaps = 43/368 (11%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +    V      G+R  +  L+QA     + R++    L  +        ++     + +
Sbjct: 1   METLQVQQAKQMGIRIDDSQLEQAIGQIAKERNMSIDQLRQQLAQYGISFAD-----FRD 55

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF- 277
           + + +  A E +             ++I I   E++   ++  ++        + Q+   
Sbjct: 56  QIRRDLMASEART--------AIVRRRINILPQEVENLAQQLGQQTQQNTEYNISQIQIR 107

Query: 278 -----------PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDV 323
                        ++EAD+  + L  G  F +LA    K   +L     G  SKE +P  
Sbjct: 108 VDESASKAERDAAKEEADKLVKDLNDGADFAKLAYTYSKGPKALKGGEWGWMSKEEMP-T 166

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQMRITKA 380
             AD I +   KG          GY I  ++++K   TVS  EVK     +   + ++ A
Sbjct: 167 IFADQIKN-NGKGAIIGPFRSGVGYHILKINDVKGLQTVSVMEVKARHILLKPSVILSDA 225

Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
             K  ++ +++ + +  G   +  ++  K +S D       G+         +P  +  +
Sbjct: 226 GAK--QELEQVRQKILSGK--ETFAQAAKAISQDPGSAANGGELGWQTPDLYVPAFKDKV 281

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
             +     P+            +  V+++      DR    +     +     K  EE  
Sbjct: 282 ETL-----PVDTISQPFKTVHGWHIVEVEGRRNV-DRTDAALKNRAYRILFNRKFNEEAQ 335

Query: 501 SKANQLVL 508
           +   +L  
Sbjct: 336 TWLQELRA 343



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 105/349 (30%), Gaps = 62/349 (17%)

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
                Q  + +G+  D  ++   I +      K+   S D    +LA+ GI+  ++ D  
Sbjct: 2   ETLQVQQAKQMGIRIDDSQLEQAIGQI----AKERNMSIDQLRQQLAQYGISFADFRDQI 57

Query: 156 TKMLSRTDVVGMFVG---GMRPSNLLLDQAKRFYFENRSVDY------IVLNNRHVPAIA 206
            + L  ++     V     + P  +     +      ++ +Y      I ++     A  
Sbjct: 58  RRDLMASEARTAIVRRRINILPQEVENLAQQLGQQTQQNTEYNISQIQIRVDESASKAER 117

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEKNKEK 263
           D +     +     KD     ++ +++Y      +  K  E   +S +E+   +    + 
Sbjct: 118 DAAKEEADKL---VKDLNDGADFAKLAYTYSKGPKALKGGEWGWMSKEEMPTIFADQIKN 174

Query: 264 YFSPE----------------------------IRTVEQLVFP---------NQKEADEA 286
                                                  ++            ++E ++ 
Sbjct: 175 NGKGAIIGPFRSGVGYHILKINDVKGLQTVSVMEVKARHILLKPSVILSDAGAKQELEQV 234

Query: 287 FQSLKKG-KKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVI 342
            Q +  G + F Q A+   +     + G       PD    +  D + +L      +   
Sbjct: 235 RQKILSGKETFAQAAKAISQDPGSAANGGELGWQTPDLYVPAFKDKVETLP-VDTISQPF 293

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
               G+ I  V   + +   +   +K      +   K +E+ +   + L
Sbjct: 294 KTVHGWHIVEVEGRR-NVDRTDAALKNRAYRILFNRKFNEEAQTWLQEL 341


>gi|118595195|ref|ZP_01552542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
           bacterium HTCC2181]
 gi|118440973|gb|EAV47600.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
           bacterium HTCC2181]
          Length = 428

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/413 (12%), Positives = 122/413 (29%), Gaps = 103/413 (24%)

Query: 11  TWVAKIFLVVLFVPFL--IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
           + +  +  +VL        WG  D          V  V +  +      +  +     + 
Sbjct: 3   SVINSLIFIVLIASHACLSWGYDDY---EPLDKIVAVVEKDVITKKEMEHGIESFNKGLR 59

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
                 + SE+     + + +LD L+    + Q+ E   +  D  ++   +         
Sbjct: 60  GSNPNNLPSEK----EIREIVLDELIEKKIISQYAEQSQIIIDIQQIDNALKNIAA---- 111

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
                            I                  +       + S  L D  +   F+
Sbjct: 112 --------------NNNIT-----------------LEQLKESAKKSGGLDDLYEEVRFQ 140

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
              +   ++  R + +  + S+  + ++ E  K+  R P+   IS+IL   +  ++    
Sbjct: 141 ---LTLRIIKERAIFSQINISDYEIKKFIE--KERLRNPDQYSISHILLKKNSGDEN--- 192

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK--- 305
                                    QL    +K   E          F ++A+E      
Sbjct: 193 -------------------------QLTLKLEKVLIELQNR-----PFDEVAQELSDGPY 222

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           +     +G F    +P++   + +  ++ + + +       GY I  V+ ++   T    
Sbjct: 223 AEKGGLMGWFELNSLPNI-FVEHVKGMSVR-EISKPFLSDNGYHILLVNEMQSKST---- 276

Query: 366 EVKKDIANQ--------MRITK--ASEKVKEDYKRLEEFLALGTSMDEISRRE 408
             K+ I +         ++  +  A   +      ++  ++ G    E + + 
Sbjct: 277 --KEKIYSTQYNINQILLKKNQVTAENDLISKLNNIKNQISDGLPFAEAASQY 327


>gi|153004697|ref|YP_001379022.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028270|gb|ABS26038.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 584

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 110/332 (33%), Gaps = 39/332 (11%)

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
            + A    ++  +    V+ A    + +   L+    R+  ++ R+  F      F    
Sbjct: 267 EDEALRAKIESTVRGEAVAKALQAYYAK---LKKQLVRIDTKLLRAVSFDKPKGGF---- 319

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV---- 192
               L ++            K ++  +V       +        +  +   + +      
Sbjct: 320 --EALRKDRRVVARVEG--AKPVTLGEVAESLARPLFHGVAPAQEQGKLDKQKQDALDAL 375

Query: 193 ---DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
                + +    +     P        FE             + +  F       +++++
Sbjct: 376 VSKRLVTIEAERLRLDDTPEAKRRAAEFETN-----------LLFTTFIDRVVIPEVKVT 424

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF-------IQLAEE 302
             E +A YEK K+++  P    +E L F + K A +A +SL+ G  F         L  E
Sbjct: 425 EAEDRAAYEKRKDEFKYPAFYRLEGLAFQDAKNAQKALKSLQGGTDFKWLRSNSDGLVPE 484

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           + +     +  + S   +P+     ++   A+ GD   V      Y +  V+   P    
Sbjct: 485 EEQVFRLDATQTISARAMPE-EFRKALAG-AQDGDVRLVASKDQHY-VVRVAQFTPESVR 541

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            F+EV+ +I   +  T  +  +    ++L + 
Sbjct: 542 PFEEVRPEIHKDVFGTAIARALDGWVEKLRDA 573



 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 64/446 (14%), Positives = 141/446 (31%), Gaps = 76/446 (17%)

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
                    K + +   E++  Y++ + ++       +  + F  + EA +   +L  G 
Sbjct: 147 FDLVRKHASKDVTVDPAEVKRLYDEARREW------RIRSVFFGQEAEAKKFTAALAAGG 200

Query: 295 KFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           +F  LA++  +           + +     VS+A  +  LA  G  T  +    G+ +  
Sbjct: 201 EFDALAKKAAEDKVARSGEGSQWIRVSEIQVSVAKEVEKLA-PGKATAPLKAGPGWTVVR 259

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL----------------- 395
           +   +       + ++  I + +R    ++ ++  Y +L++ L                 
Sbjct: 260 LDEKRSVED---EALRAKIESTVRGEAVAKALQAYYAKLKKQLVRIDTKLLRAVSFDKPK 316

Query: 396 ----ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
               AL      ++R E    + L  V  +        VA    + +L  +     D L 
Sbjct: 317 GGFEALRKDRRVVARVEGAKPVTLGEVAESLARPLFHGVAPAQEQGKLDKQKQDALDALV 376

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD----------VKKDWKTVKTAEEVS- 500
               V +       +++ +  P   R+  E  T+          V  + K  +  +  + 
Sbjct: 377 SKRLVTIEAER---LRLDD-TPEAKRRAAEFETNLLFTTFIDRVVIPEVKVTEAEDRAAY 432

Query: 501 ----------------------SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
                                 +K  Q  L+  + G +F+ +  N    +    Q+ R+D
Sbjct: 433 EKRKDEFKYPAFYRLEGLAFQDAKNAQKALKSLQGGTDFKWLRSNSDGLVPEEEQVFRLD 492

Query: 539 NENKFFGYDGISQ---VFSGPVEMVKCFPIENGLSYV--VFKVTNSKVGPVQE-KDKFIS 592
                       +     +G  +            YV  V + T   V P +E + +   
Sbjct: 493 ATQTISARAMPEEFRKALAGAQDGDVRLVASKDQHYVVRVAQFTPESVRPFEEVRPEIHK 552

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTV 618
            +        LD  +  L+  + V V
Sbjct: 553 DVFGTAIARALDGWVEKLRDAHEVNV 578


>gi|296112972|ref|YP_003626910.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis RH4]
 gi|295920666|gb|ADG61017.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis RH4]
          Length = 307

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 100/331 (30%), Gaps = 65/331 (19%)

Query: 71  IGFVVNSERARSVGLDKKILD--NLVSG--ATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           +G   +  +     LDK+I D  NL++    TL     + G+  D   V  E+   P   
Sbjct: 17  LGRPSSDAQFIKQALDKEIFDSTNLIASSHQTLPNITVN-GVAIDPKAVAAEVQYHPA-- 73

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
              N     +F++                 + L R +V+                 +R +
Sbjct: 74  ---NSQEEALFLAA-----------QALVMRELLRQEVIECLG-------------ERAW 106

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            EN       L  + V A   P  A    ++   +  + +     + +IL     +E + 
Sbjct: 107 LENEEATIAKLLEQQVIAK-SPDKASCQNYYHANQVEFVSTPIMTLRHILLACPPQEGEE 165

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            I   EL+ +  +  ++      R                         FI+ A      
Sbjct: 166 RI---ELKKQARQLIDRLNQSHNRD----------------------SDFIEFARRYSAC 200

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG   K          ++F+L   G     I   +G  +  V   +    +S
Sbjct: 201 PSKDDGGELGVLQKGSTV-PEFESAVFALP-VGISINPIETRYGIHVIEVLQKQEGRQLS 258

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           F+E    I N ++       + +    L + 
Sbjct: 259 FEEAYPIIENHLKQQSFHHSLCDYLFELSQK 289


>gi|323488673|ref|ZP_08093915.1| SurA domain-containing protein [Planococcus donghaensis MPA1U2]
 gi|323397691|gb|EGA90495.1| SurA domain-containing protein [Planococcus donghaensis MPA1U2]
          Length = 253

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 56/150 (37%), Gaps = 5/150 (3%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
            V  V  +++    F + +  +   ++ +    ++ +      L +++ D+LV+   L Q
Sbjct: 62  VVAEVNGEEITKEDFESIYTGQFEQMAMQ--SQLSGQEVDQSQLKEQVADSLVAQELLVQ 119

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
             E   L A   +    +        ++   S D  ++ L  +GI+E+E +      +  
Sbjct: 120 ETEKQKLTASEEQTNTALEELAQ---QNGLTSSDELLAALKEQGISEEEVMKQIETQVKI 176

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
             ++    G ++ ++  L          + 
Sbjct: 177 EQLIAAETGEIKLTDEELQTYYDEAKAQQE 206


>gi|77362220|ref|YP_341794.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76877131|emb|CAI89348.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 92

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  +++ A++    L KG KF  LA++     S      LG F +  +       
Sbjct: 6   HALHILVKHKEIAEDIITQLGKGAKFQTLAKKYSSCPSGKKGGDLGEFRRGQMV-PQFDK 64

Query: 328 SIFSLAKKGDFTPVI--HGSFGYVIAHV 353
             F     G           FG+ +  V
Sbjct: 65  IAF----NGAILEPHLVKTKFGWHVIKV 88


>gi|258509270|ref|YP_003172021.1| peptidylprolyl isomerase [Lactobacillus rhamnosus GG]
 gi|257149197|emb|CAR88170.1| Endopeptidase maturation protein prtM [Lactobacillus rhamnosus GG]
 gi|259650551|dbj|BAI42713.1| peptidylprolyl isomerase [Lactobacillus rhamnosus GG]
          Length = 300

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 18/160 (11%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           K ++R      I   L      +K  +++N +L+  ++  + K       TV+ ++  ++
Sbjct: 109 KSSFRQ----SIRTNLLSEVALKKLKKVTNSQLKTAWKTYQPK------VTVQHILTSDE 158

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKG 336
             A +    L  GK F  LA+      S    G      S     D +  D+ + L K G
Sbjct: 159 STAKQVISDLAAGKDFTTLAKTYSIDTSTKDKGGKVSFESSSKSLDSTFKDAAYKL-KNG 217

Query: 337 DFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           ++T   +  + GY +  +    P+   +F + KK +   +
Sbjct: 218 EYTQSPVKVTNGYEVIKMIE-HPAKG-TFSDSKKALTASV 255


>gi|195453617|ref|XP_002073865.1| GK12925 [Drosophila willistoni]
 gi|194169950|gb|EDW84851.1| GK12925 [Drosophila willistoni]
          Length = 129

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G+KF ++A    +  +     LG   +  +      D+
Sbjct: 37  KVRHILCEKQGKITEAMEKLKAGQKFPEVAAAYSEDKARQGGDLGWQIRGAMVGP-FQDA 95

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L            P I   FGY I  V   K
Sbjct: 96  AFALPISTVNNPVYTDPPIKTKFGYHIIMVEGKK 129


>gi|327541670|gb|EGF28194.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopirellula
           baltica WH47]
          Length = 599

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 90/256 (35%), Gaps = 25/256 (9%)

Query: 220 YKDNYRAPEYKRISYILFDVHE---KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
            ++    P+      I   +        ++ +S DE          ++   E      ++
Sbjct: 122 NEERDITPDQYSREIIWPMLALRKLVADEVAVSQDE---FNRAIVSQFG--EAIKCRMVM 176

Query: 277 FPNQKEADEA-FQSLKKGKKFIQLAEEQGKSLSDISLGSF---SKEYIPDVSLADSIFSL 332
             ++ +A +   Q++ +   F +LA+E  +  +  S+G      + Y+ D ++ ++ F+L
Sbjct: 177 VQDKSQATQLRAQAVAEPSSFARLAKEFSEDPTSASVGGLIPPIRRYMGDETIEEAAFAL 236

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS-------FQEVKKDIANQMRITKASEKVK 385
            K  + + ++     ++        P+ T S         +++  I ++   T AS+   
Sbjct: 237 -KVDEVSELLPVGDHWMFLQAVRRMPASTPSPQAMPAIKDQIEDRIRDEKMKTAASQLFA 295

Query: 386 EDYKRLEEFLALGTSMDE-----ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
           +  ++ +    LG          ++       + +  V        G+ V       +LL
Sbjct: 296 QLQEQAQVVKILGDPQASAKHPGVAAIINGQQVSISNVAAECIKRHGESVLEGEINRKLL 355

Query: 441 FRVFGKDDPLSKDHTV 456
            +   K      +  +
Sbjct: 356 TQALAKAGKKVTNEDL 371



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 50/151 (33%), Gaps = 29/151 (19%)

Query: 20  VLFVPFL--IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           +L   F+  + G S      + +S V  V    +   S   +         Q+ G     
Sbjct: 23  LLAAAFVAILSGFSTMRVEAAENSVVAVVNADPISRDSLATA-------SVQRYGTD--- 72

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
                      +LDNL++   + Q  +  GL      V  EI R      K    + + +
Sbjct: 73  -----------VLDNLINRHLIMQECKRRGLGVTTEEVRTEINRV----AKKFGLNVESY 117

Query: 138 VSRLAREG-INEKEY-IDHYTKMLSRTDVVG 166
           +  L  E  I   +Y  +    ML+   +V 
Sbjct: 118 LQLLNEERDITPDQYSREIIWPMLALRKLVA 148



 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 12/158 (7%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK---FIQ 298
            E K  ++ ++LQ  +E +           V   V  +Q+ A + ++  +       F Q
Sbjct: 426 VEDKTVLTQEDLQIGFESHYGP-----RAEVLACVLSDQRSAQKVWEMARDNPTDQFFGQ 480

Query: 299 LAEEQGKSL-SDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           LA +      S  + G     K +    S+   +F + K GD + +I     Y+I     
Sbjct: 481 LANQYSIEPVSSSNFGKVPPIKRHGGQPSVEKEVFQM-KPGDLSGIIATGDKYIILRCQG 539

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                   F+ V++++ + +   K +  +   Y  L++
Sbjct: 540 FTEPVVSDFEAVQEELRSVLIEKKMNVAMSLKYDELKQ 577


>gi|189463692|ref|ZP_03012477.1| hypothetical protein BACINT_00023 [Bacteroides intestinalis DSM
           17393]
 gi|189438642|gb|EDV07627.1| hypothetical protein BACINT_00023 [Bacteroides intestinalis DSM
           17393]
          Length = 454

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 86/251 (34%), Gaps = 28/251 (11%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK---KIEISNDELQAEYEK--NKEK 263
           S   + ++F K     R    +     L     ++K   +I+I+  E++  ++       
Sbjct: 112 SREKMEEYFNKTSSQIRETLRENAREGLKVQKMQQKLVGEIKITPAEVRRYFKDLPQDSI 171

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQ----------SLKKGKKFIQLAE----EQGKSLSD 309
            + P    V+ +    +   +E              + KG+ F  LA     ++G +++ 
Sbjct: 172 PYIPTQVEVQIITQQPKIPLEEIEDVKRRLREYTERVNKGESFSMLARLYSDDRGTAING 231

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
             +    + Y+ D + A+  F+L      + ++   +G+ I  +   +         V+ 
Sbjct: 232 GEMPFTGRGYL-DPAFANVAFNLQDPNKVSKIVESEYGFHIIQLMEKRGDRIK----VRH 286

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSIDLPLVDFAGKDVKGK 428
            +       +A          + + +  G  S +E +    ++S D    +  G      
Sbjct: 287 ILLKPHVPEEALMAGTARLDSIADDIRNGKFSFEEAAS---VLSQDKDTRNNHGLLPNPN 343

Query: 429 EVAAIPYKEQL 439
              +    ++L
Sbjct: 344 NNTSKFEMQEL 354


>gi|127513398|ref|YP_001094595.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
 gi|126638693|gb|ABO24336.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
          Length = 92

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
             T   L+  +++E  +  Q +  G  F ++A+      S      LGSF    +     
Sbjct: 3   QATARHLLVSSEEECAQIKQQILDGADFGEMAKAHSSCPSGAQGGDLGSFGPGMMV-REF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            + +FS     +    +   FGY +  V++ 
Sbjct: 62  DEVVFSAPLN-EVQGPVKTQFGYHLLEVTSR 91


>gi|282859614|ref|ZP_06268717.1| PPIC-type PPIASE domain protein [Prevotella bivia JCVIHMP010]
 gi|282587617|gb|EFB92819.1| PPIC-type PPIASE domain protein [Prevotella bivia JCVIHMP010]
          Length = 377

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 72/207 (34%), Gaps = 34/207 (16%)

Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS---NAVLTQWFEKYKDNYRAPE 228
                  LD+   F  +  S+    +    +P ++ PS        + + +        E
Sbjct: 68  AAAEEARLDKTASFNEQVESLLSPTVAPVSIPTVSTPSASLEQDARRLYNE--------E 119

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            + +               +S  E+     ++   Y   + R +          AD  ++
Sbjct: 120 RREVE---------GNGGLVSYGEILIRINQHATAYEEDKARVL----------ADSVYR 160

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           +L+ G  F  LA++  ++          +  + +  +  ++FS+ + G+    +   FG+
Sbjct: 161 ALQGGADFATLAKKYSQTKGGRVFAVVGRNEVLE-EVEKALFSM-QAGELRAPVTSPFGF 218

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQM 375
            I  V   +     +++ V+  +  Q+
Sbjct: 219 HILKVYARE--QYPAYEVVRPRLIKQL 243


>gi|186474397|ref|YP_001863368.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
 gi|184198356|gb|ACC76318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
          Length = 284

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 71/242 (29%), Gaps = 29/242 (11%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           + +  +        +P    L QA +     R +                    + Q   
Sbjct: 48  IPQAQLDAAVQATRQPDTPQLRQALKAQLITRELFRQNAEKAGYGNKP-----EVQQVIN 102

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             K N         +     + +      +++ ++++ Y++        + R    +   
Sbjct: 103 ATKVN---------AESQLYLKDNIHPDAVTDAQVKSRYDEIVASLGKDDYRP-RIIAVA 152

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLAD 327
           +   A      LK GK F  LA +   +    + G              K     + +A 
Sbjct: 153 DAMTAATVLGGLKAGKSFDVLARQYSITPDKANGGELPWVSFKAPAAEGKTSGLPLPVAQ 212

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ---MRITKASEKV 384
           ++  L   G     +      VI  +   +P+    F +VK  I  Q   + + KAS + 
Sbjct: 213 ALTQLPVGGVTPEPVIVGNARVIVKLDAKRPTQVPKFDQVKDTIRQQLQALALEKASAQF 272

Query: 385 KE 386
             
Sbjct: 273 TA 274



 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 47/158 (29%), Gaps = 12/158 (7%)

Query: 354 SNIKPSFTVSFQEVK---KDIANQMRITKASEKVKEDYKRLEEF-----LALGTSMDEIS 405
            NI P       +VK    +I   +       ++      +        L  G S D ++
Sbjct: 116 DNIHPDAVTD-AQVKSRYDEIVASLGKDDYRPRIIAVADAMTAATVLGGLKAGKSFDVLA 174

Query: 406 RREKIVSIDL--PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
           R+  I         + +        E         +   +            V + + + 
Sbjct: 175 RQYSITPDKANGGELPWVSFKAPAAEGKTSGLPLPVAQALTQLPVGGVTPEPVIVGN-AR 233

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
           + V++    P +  K ++V   +++  + +   +  + 
Sbjct: 234 VIVKLDAKRPTQVPKFDQVKDTIRQQLQALALEKASAQ 271


>gi|332293065|ref|YP_004431674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332171151|gb|AEE20406.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 483

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/439 (13%), Positives = 133/439 (30%), Gaps = 103/439 (23%)

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           ++L +L+    L        +     RV  E+ +               F S+L     +
Sbjct: 98  QVLGSLLENKLLTHQAVQDSIVVQDSRVNSEVDQM-----------VQRFASQLG----S 142

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
           E++ ++ Y K         +F   +R +N+L D+  +   E+                 D
Sbjct: 143 EQKVVEFYRKESMADLRAELF--SIRKNNILSDRMNQKIVES----------------VD 184

Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
            +   +  +F       R P  +  ++ +  ++     + + + +E Q   ++ K     
Sbjct: 185 VTPDEIKTFFN------RIPADELPTFGVELEIARIVIEPKATEEERQKVIDRLKGF--- 235

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDV 323
              R +                 L+ G  F   A    + G S  D  L    ++     
Sbjct: 236 --RRDI-----------------LENGSSFATKAVLYTDDGASRPDGGLMVIDRKTPLVK 276

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR----ITK 379
              D  FSL + G+ +      FG+ I  V   K          +KDI + +        
Sbjct: 277 EFRDVAFSL-QDGEISEPFETEFGFHIVTVEKTKGE--------RKDIRHILLVPEIKEA 327

Query: 380 ASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA------ 432
             E+ K+   ++ + +  G  + +E ++       D     F G  +   +         
Sbjct: 328 QEEEAKDLVNKVRKRIIDGELTFEEAAKEFS----DETETKFEGGTLTNPQTLDKRFELG 383

Query: 433 --IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV----QIKESIPARDRKLEEVLT-- 484
              P     +  +  ++  L            ++      +++E      +   ++    
Sbjct: 384 RLDPDIYPKVNNLADEEVSLVYTDQTRTGTKQFLIYTVDNRLEEHKADYVKDYIKIKELA 443

Query: 485 ------DVKKDWKTVKTAE 497
                    + W+  K  E
Sbjct: 444 LREKQIAAIEKWQKEKITE 462


>gi|323347922|gb|EGA82182.1| Ess1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 170

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLAEEQGKSLS---DISLGSFSK 317
           P     E +    Q   DE    +       K   F  LA+E+    S      LG F +
Sbjct: 75  PASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSYKRGGDLGWFGR 134

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +   S  D+ F L K G+ + ++    G  +  
Sbjct: 135 GEM-QPSFEDAAFQL-KVGEVSDIVESGSGVHVIK 167


>gi|323332847|gb|EGA74250.1| Ess1p [Saccharomyces cerevisiae AWRI796]
          Length = 190

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLAEEQGKSLS---DISLGSFSK 317
           P     E +    Q   DE    +       K   F  LA+E+    S      LG F +
Sbjct: 95  PASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSYKRGGDLGWFGR 154

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +   S  D+ F L K G+ + ++    G  +  
Sbjct: 155 GEM-QPSFEDAAFQL-KVGEVSDIVESGSGVHVIK 187


>gi|323308448|gb|EGA61693.1| Ess1p [Saccharomyces cerevisiae FostersO]
          Length = 170

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLAEEQGKSLS---DISLGSFSK 317
           P     E +    Q   DE    +       K   F  LA+E+    S      LG F +
Sbjct: 75  PASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSYKRGGDLGWFGR 134

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +   S  D+ F L K G+ + ++    G  +  
Sbjct: 135 GEM-QPSFEDAAFQL-KVGEVSDIVESGSGVHVIK 167


>gi|323304351|gb|EGA58124.1| Ess1p [Saccharomyces cerevisiae FostersB]
          Length = 170

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLAEEQGKSLS---DISLGSFSK 317
           P     E +    Q   DE    +       K   F  LA+E+    S      LG F +
Sbjct: 75  PASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSYKRGGDLGWFGR 134

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +   S  D+ F L K G+ + ++    G  +  
Sbjct: 135 GEM-QPSFEDAAFQL-KVGEVSDIVESGSGVHVIK 167


>gi|259147486|emb|CAY80738.1| Ess1p [Saccharomyces cerevisiae EC1118]
          Length = 170

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLAEEQGKSLS---DISLGSFSK 317
           P     E +    Q   DE    +       K   F  LA+E+    S      LG F +
Sbjct: 75  PASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSYKRGGDLGWFGR 134

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +   S  D+ F L K G+ + ++    G  +  
Sbjct: 135 GEM-QPSFEDAAFQL-KVGEVSDIVESGSGVHVIK 167


>gi|282878157|ref|ZP_06286954.1| PPIC-type PPIASE domain protein [Prevotella buccalis ATCC 35310]
 gi|281299735|gb|EFA92107.1| PPIC-type PPIASE domain protein [Prevotella buccalis ATCC 35310]
          Length = 484

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/323 (10%), Positives = 80/323 (24%), Gaps = 80/323 (24%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           VG + +  S        E+  +  +    +  +R     + ++I              E 
Sbjct: 56  VGDEPIMKSDV------EMSRLQAE-AEGIKFKRNPDFAIPEQI----AVQKLFLHQAEL 104

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
             ++    +V   I R      +    S +         G +  +             +V
Sbjct: 105 DSVKVQESQVTANIERQINRWIEMAGGSVERLEQY---RGQSIAQMRSQLRDDFRNNLLV 161

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
                                               +      + + +  +F+   ++  
Sbjct: 162 QSMQ------------------------------EKLVEDVKVTPSDVRAYFKNLPEDSI 191

Query: 226 --APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
              P    +  I        ++I    DEL+                             
Sbjct: 192 PFVPTEVEVEIITRTPRILPEEINRVKDELRNY--------------------------- 224

Query: 284 DEAFQSLKKGKK-FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFT 339
               + + KG+  F  LA    +       G    ++   + D + A+  F+L      +
Sbjct: 225 ---TERVTKGETTFATLARLYSEDPGSARQGGEMDYTGRGMLDPAFANVAFNLTDPKKIS 281

Query: 340 PVIHGSFGYVIAHVSNIKPSFTV 362
            ++   FG+ I  + + +     
Sbjct: 282 KIVETEFGFHIIQLVDKRGDKIK 304


>gi|194741062|ref|XP_001953008.1| GF17558 [Drosophila ananassae]
 gi|194908758|ref|XP_001981834.1| GG11384 [Drosophila erecta]
 gi|195504429|ref|XP_002099075.1| GE23581 [Drosophila yakuba]
 gi|190626067|gb|EDV41591.1| GF17558 [Drosophila ananassae]
 gi|190656472|gb|EDV53704.1| GG11384 [Drosophila erecta]
 gi|194185176|gb|EDW98787.1| GE23581 [Drosophila yakuba]
          Length = 130

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G+KF ++A    +  +     LG   +  +      D+
Sbjct: 38  KVRHILCEKQGKITEAMEKLKAGQKFPEVAAAYSEDKARQGGDLGWQIRGAMVGP-FQDA 96

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L            P I   FGY I  V   K
Sbjct: 97  AFALPISTVNNPVYTDPPIKTKFGYHIIMVEGKK 130


>gi|160890578|ref|ZP_02071581.1| hypothetical protein BACUNI_03021 [Bacteroides uniformis ATCC 8492]
 gi|270295715|ref|ZP_06201915.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317479880|ref|ZP_07938997.1| ppic-type ppiase domain-containing protein [Bacteroides sp. 4_1_36]
 gi|156859577|gb|EDO53008.1| hypothetical protein BACUNI_03021 [Bacteroides uniformis ATCC 8492]
 gi|270273119|gb|EFA18981.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|290769660|gb|ADD61440.1| putative protein [uncultured organism]
 gi|316903954|gb|EFV25791.1| ppic-type ppiase domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 455

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 100/320 (31%), Gaps = 32/320 (10%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK---KIEISNDELQAEYEK--NKEK 263
           S   + ++F K     R    +     L     ++K   +I+I+  E++  ++       
Sbjct: 112 SREKMEEYFNKTSSQIRETLRENAREGLKVQKMQQKLVGEIKITPAEVRRYFKDLPQDSI 171

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQ----------SLKKGKKFIQLAEEQGKSLSDISLG 313
            + P    V+ +    +   +E              + KG+ F  LA    +       G
Sbjct: 172 PYIPTQVEVQIITQQPKVPLEEIEDVKRRLREYTDRVNKGESFSMLARLYSEDRGSAMRG 231

Query: 314 S---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-VKK 369
               FS   + D + A+  F+L      + ++   +G+ I  +   +     +    +K 
Sbjct: 232 GEIEFSGRGMLDPAYANVAFNLQDPSKVSKIVESEYGFHIIQLIEKRGDRIKTRHILLKP 291

Query: 370 DIANQ------MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
            I  +       R+   ++ ++ +    EE  ++ +   +      ++            
Sbjct: 292 HIPEEALAAGCARLDSIADDIRNNKFSFEEAASVLSQDKDTRNNHGLLPNPNTNTSRFEM 351

Query: 424 DVKGKEVAAIPYKEQL--LFRVFGKDDPLSKDHTVALPD-----GSYMWVQIKESIPARD 476
                E+A +  K ++  +   F      +      +         +      +    ++
Sbjct: 352 QELPPEIAKVVDKMKVGEISEAFTMIPQKTGKEECVIVKLKSRTTGHKATIADDYQNLKE 411

Query: 477 RKLEEVLTDVKKDWKTVKTA 496
             LE+   +V   W   K  
Sbjct: 412 IVLEKRRDEVLDKWIREKQK 431


>gi|153872834|ref|ZP_02001612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beggiatoa sp. PS]
 gi|152070703|gb|EDN68391.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beggiatoa sp. PS]
          Length = 253

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 66/175 (37%), Gaps = 6/175 (3%)

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
           + +  G +       D  K    + +      +    +          L +  E++ D  
Sbjct: 29  LAIINGEVLTQQDYDDYVKARTTQTQRRATPEILLEELVQRELLKQDALKKKLEQHPDFI 88

Query: 225 R-APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           R   + +    +   +H+  +K  +    L+ EY+K       P+   +  ++    ++A
Sbjct: 89  RKLTDMRNSLLVAMAIHDDLEKHALDEAALKKEYDKQIAHVEVPKEYQIRHILVETAEQA 148

Query: 284 DEAFQSLKKGKKFIQLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
                 L++GK F +LA+E+      +     LG  +K+ I D ++ + +  L K
Sbjct: 149 KAIIAELEQGKAFGELAKEKSIDKPSANKAGELGWITKQQI-DPNVGEMVEKLEK 202


>gi|227533717|ref|ZP_03963766.1| peptidylprolyl isomerase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|400854|sp|Q02473|PRSA_LACPA RecName: Full=Foldase protein prsA; AltName: Full=Protease
           maturation protein prtM; Flags: Precursor
 gi|149581|gb|AAA25247.1| maturation protein [Lactobacillus paracasei]
 gi|227188701|gb|EEI68768.1| peptidylprolyl isomerase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 299

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 74/232 (31%), Gaps = 26/232 (11%)

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
             V     G +  SN   +  +    +    + ++    +       S   +   ++ YK
Sbjct: 31  QKVATYSGGKVTESNFYKELKQSPTTKTMLANMLIYRALNHAYGKSVSTKTVNDAYDSYK 90

Query: 222 DNY--------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
             Y              R+   + +          +K  ++S  +L+A ++  + K    
Sbjct: 91  QQYGENFDAFLSQNGFSRSSFKESLRTNFLSEVALKKLKKVSESQLKAVWKTYQPK---- 146

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDV 323
              TV+ ++  ++  A +    L  GK F  LA+      +    G      S     D 
Sbjct: 147 --VTVQHILTSDEDTAKQVISDLAAGKDFATLAKTDSIDTATKDNGGKISFESNNKTLDA 204

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           +  D+ + L         +  + GY +  +  I      +F   KK +   +
Sbjct: 205 TFKDAAYKLKNGDYTQTPVKVTNGYEVIKM--INHPAKGTFTSSKKALTASV 254


>gi|298490621|ref|YP_003720798.1| PpiC-type peptidyl-prolyl cis-trans isomerase ['Nostoc azollae'
           0708]
 gi|298232539|gb|ADI63675.1| PpiC-type peptidyl-prolyl cis-trans isomerase ['Nostoc azollae'
           0708]
          Length = 252

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 93/260 (35%), Gaps = 23/260 (8%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-------SVDYIVLN 198
           +    +     + +    V+       + +  + D  +++  E          +   ++ 
Sbjct: 1   MEPSSFFTINDEQIDLYQVIQYLQVSGKLNQFISDVLRQYVLEQELETRNDIEISTALIE 60

Query: 199 NR--HVPAIADPSN-AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
                       ++     +W +    +Y        + + F    ++ K  I   +L  
Sbjct: 61  QAIIDYRLKNQLTDPEQFQKWLKNNGSDYAT----FHASVTFSFKLEKLKALIVEPKLPE 116

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISL 312
            + + K      +   + +++  N++ A+E    +++G  F QLA+E   +   + +  +
Sbjct: 117 YFIERKIYL---DRVVLSRIMVDNRELAEELHTQIEEGGSFEQLAKEYSLADERIFNGMM 173

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           G  S+  +PD  +  +    A  G     I       +  + NI P+   +  + K+ + 
Sbjct: 174 GPISRGSLPD--ILRAAVDAATPGKLIGPIELEGSLSLFRLENILPASLEN-TQFKQSLQ 230

Query: 373 NQMRITKASEKVKEDYKRLE 392
           N++      EK++    +L+
Sbjct: 231 NELFEKWLGEKIQNLTVKLQ 250


>gi|224143511|ref|XP_002336050.1| predicted protein [Populus trichocarpa]
 gi|222869555|gb|EEF06686.1| predicted protein [Populus trichocarpa]
          Length = 141

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA+Q L+ G           +F +LA E  +  S      LG F +
Sbjct: 43  KARHILCEKQGKINEAYQKLQDGWLSNGDKVPPAEFAKLASEYSECPSGKKGGDLGWFPR 102

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      D  F+  + G  +     + GY +      K
Sbjct: 103 GKMAGP-FQDVAFA-TQIGATSAPFKSTHGYHVILCEGRK 140


>gi|224098920|ref|XP_002311318.1| predicted protein [Populus trichocarpa]
 gi|222851138|gb|EEE88685.1| predicted protein [Populus trichocarpa]
          Length = 148

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA+Q L+ G           +F +LA E  +  S      LG F +
Sbjct: 50  KARHILCEKQGKINEAYQKLQDGWLSNGDKVPPAEFAKLASEYSECPSGKKGGDLGWFPR 109

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      D  F+  + G  +     + GY +      K
Sbjct: 110 GKMAGP-FQDVAFA-TQIGATSAPFKSTHGYHVILCEGRK 147


>gi|332143233|ref|YP_004428971.1| Parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553255|gb|AEA99973.1| Parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 264

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 80/245 (32%), Gaps = 20/245 (8%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +S T+   + V G   S  ++D   +++        +V     +      +   + +   
Sbjct: 1   MSLTNTPDITVNGKTISAAMIDAEVQYHPAESRRQAMVKAAETLIIGELVTQKAMEKGIP 60

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
               +    +  ++   L          E + +E +  Y  NK  + +  +     ++  
Sbjct: 61  LNPKSDAIEQNSQLIDSLLASEVCVP--EATTEECERYYSANKGTFKTAPLIEASHILIA 118

Query: 279 NQKE-----------ADEAFQSLKKGKK-FIQLAEEQGKSLS---DISLGSFSKEYIPDV 323
           +  +           A      L+ G+    +LA++     S   D SLG  S       
Sbjct: 119 SDPKDLEHRAESHALAVNLIHKLQGGESTLGELAKQFSSCPSKDVDGSLGQLSYGQTV-R 177

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
                +F+ ++ G     +   +GY +  V+       +SF  V++ I   +   K   K
Sbjct: 178 EFERQVFAASE-GLMPQPVETRYGYHVVLVARKVDGKPLSFDMVREKIKQYL-NDKVHRK 235

Query: 384 VKEDY 388
               Y
Sbjct: 236 ALSQY 240


>gi|325208828|gb|ADZ04280.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
          Length = 288

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 80/253 (31%), Gaps = 19/253 (7%)

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
             +    ++      +    +     + ++  + KR   +          +         
Sbjct: 41  AAFRAENSRAEDTPQLRQSLLENEVVNTVVAQEVKRLKLDR---------SAEFKNALAK 91

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVH---EKEKKIEISNDELQAEYEKNKEKYF 265
             A   +  +  K +++      + Y L          K   +S  E++A Y+     Y 
Sbjct: 92  LRAEAKKSGDDKKPSFKTVWQ-AVKYGLNGEAYALHIAKTQPVSEQEIKAAYDNISGFYK 150

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG----KSLSDISLGSFSKEYIP 321
             +   + +++   ++ A +A   LK  K F  + ++         +   +G    + + 
Sbjct: 151 GTQEVQLGEILTDKEENAKKAVADLKAKKGFDAVLKQYSLNDRTKQTGAPVGYVPLKDLE 210

Query: 322 D--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
                L  +I  L K       +     Y + +V++ +     SF E+K  IA  ++  +
Sbjct: 211 QGVPPLYQAIKDLKKGEFTATPLKNGDFYGVYYVNDSREVKVPSFDEMKGQIAGNLQAER 270

Query: 380 ASEKVKEDYKRLE 392
               V     +  
Sbjct: 271 IDRAVGALLGKAN 283


>gi|332665906|ref|YP_004448694.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334720|gb|AEE51821.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 455

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/323 (10%), Positives = 94/323 (29%), Gaps = 85/323 (26%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V ++G  ++     ++  +++      +    V  E          +++ ++    L   
Sbjct: 27  VATIGG-EIT---LLSEVEEQYAYTKAQRNGAVPPEA------RCMLVEQILVNKLLLNQ 76

Query: 103 IEDIGLEADHGRVWGE----IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
            +   +E     V  +    I R   +   D K   + +       G    E  + + + 
Sbjct: 77  AKLDSIEVKDEEVESQLTARIERILSYMNDDLKQFEEYY-------GQTVNEVREQFRED 129

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L    ++                                    + A    + + +  +  
Sbjct: 130 LRNNLLIERMR------------------------------AKIMADVSVTPSEVKDF-- 157

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                +R      + Y   +V   E   ++                 + E + V      
Sbjct: 158 -----FRRIPKDSLPYFSSEVEVGEIVYKVP---------------INKEQKRV------ 191

Query: 279 NQKEADEAFQSLKKG-KKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
             ++ ++  + + +G + F +LA++    G +     LG   +          + + L +
Sbjct: 192 TMEKLEDIRKRIVEGKEDFAELAKKYSDDGSARGGGDLGWAKRGKYV-TEFEAAAYKLEE 250

Query: 335 KGDFTPVIHGSFGYVIAHVSNIK 357
             + +PVI   FG+ +  +   +
Sbjct: 251 M-EVSPVIETQFGFHVLQMLGRR 272


>gi|288929626|ref|ZP_06423470.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288329131|gb|EFC67718.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 458

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/373 (12%), Positives = 101/373 (27%), Gaps = 98/373 (26%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           VG + +  S    +      + ++  G             D  I + L            
Sbjct: 38  VGDEPILKSDVEAA-----RLQAENEGHKF------KGNPDCSIPEQLALQKLFLHQAAI 86

Query: 106 IGLEADHGRVWGEIARSPLF--HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
             LE     +   I     +      +K   + +           K+ I    + +    
Sbjct: 87  DSLEVSESEISQGIEEQINYWIQLIGSKEKLEEYR----------KQTISEMRQAMH--- 133

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
                       +   ++      E             + +    S A + ++F+    +
Sbjct: 134 -----------DDYKNNRLIAMMKEK------------LVSDVKVSPADVRKYFKDLPAD 170

Query: 224 Y--RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
                P    +  I  +   K +++    D+L+                           
Sbjct: 171 SIPMVPTMVEVEIITQNPKVKTEEVNRIKDQLREY------------------------- 205

Query: 282 EADEAFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
                   + KG+  F  LA    E+ G +     LG   +    D + A   F+L    
Sbjct: 206 -----TDRVTKGETTFATLARLYSEDPGSARQGGELGFTGRAAF-DPAFAAVAFNLTDPN 259

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE---- 392
             + ++   FGY I  + + +         V+  +   ++   A + +     RL+    
Sbjct: 260 KISKIVETEFGYHIIQLIDKRGDKI----NVRHIL---LKPRIAQDDIDRSKARLDSIAS 312

Query: 393 EFLALGTSMDEIS 405
           +  A   S +E +
Sbjct: 313 DIKAGKFSFEEGA 325


>gi|205372831|ref|ZP_03225640.1| protein export protein prsA [Bacillus coahuilensis m4-4]
          Length = 242

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 80/213 (37%), Gaps = 18/213 (8%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           ++  D+    +   RP   +    +     +       +++  +    + +   L   +E
Sbjct: 38  ITEEDLYNQLLNNYRP--QVEQALRDLTLLHILEQNYDVSSEELQLELENAKEALGSQYE 95

Query: 219 KYKDNYRAPE---YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +Y + Y+  E    ++++  +         +E +  +LQ  Y       ++P I  V  +
Sbjct: 96  EYLNEYQINEEQFKEQLALQVLQRKAAISTLEATEKDLQDFYTT-----WTPAI-NVRHI 149

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQG----KSLSDISLGSFS--KEYIPDVSLADSI 329
           +  +++ A +    L+ G  F  LAE        + S  +LG+ S  +       +  ++
Sbjct: 150 LVSDKETAKKVLDELQSGTAFEDLAETYSIDSLTASSGGNLGTISYLERDAFSTEMLQAM 209

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
             L +  + +  I   +G+ I  ++  +   T 
Sbjct: 210 DEL-QVNEISQPIESPYGFHIVEITEKERKKTT 241


>gi|84385275|ref|ZP_00988307.1| peptidyl-prolyl cis-trans isomerase [Vibrio splendidus 12B01]
 gi|84379872|gb|EAP96723.1| peptidyl-prolyl cis-trans isomerase [Vibrio splendidus 12B01]
          Length = 92

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  +++ A++  + LKKG KF  LA++     S      LG F K  +         F
Sbjct: 9   HILVKHKEVAEDIIKQLKKGAKFQTLAKKHSTCPSGKKGGDLGEFKKGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GETLVPHLVKTKFGWHVVKV 88


>gi|315223421|ref|ZP_07865278.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea F0287]
 gi|314946594|gb|EFS98585.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea F0287]
          Length = 471

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/398 (11%), Positives = 107/398 (26%), Gaps = 83/398 (20%)

Query: 15  KIFLVVLFVPFL--IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           KI+ V++ + F    +  ++    V G      VG   +  S    ++            
Sbjct: 25  KIWSVLVILLFTTPFFAQNNERRKVDG--VAAVVGDYLILESDIDKAY------------ 70

Query: 73  FVVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
             +  +   +  +++ ++L  L+             ++     V  ++ +   F      
Sbjct: 71  IDLQQQEVDTREINRCQMLGKLMEDKLYAHQAVQDSVKLTDSEVRDQVNQRIEFLTAQLG 130

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
                 +          K+        L     V M    M+                  
Sbjct: 131 GDIKKLLEFYK------KDDEQSMRDELFNLLKVSMLAQRMK------------------ 166

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
                   + +    + +   +  +F     +    E       L         +   + 
Sbjct: 167 --------QQIIKDIEVTPEEVRTFFNAIPAD----ERPHFGTELEIAQIVVNPVAPKSS 214

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-LSDI 310
             +   + N  K    E                        G  F   A    +   +  
Sbjct: 215 VQKVINQLNDIKKDVEE-----------------------NGMSFSTKAILYSQDRATGG 251

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            + +F++    D +  D  F+L + G+ +     SFG+ I  +  I+         V+  
Sbjct: 252 QVLTFNRNSAFDKAFKDVAFTLRE-GEISKPFESSFGWHIIQMDKIRGKEV----SVRHI 306

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRR 407
           +       +A  + KE   ++ + +     + DE +R 
Sbjct: 307 LLMPEIPQEALNEAKEKIAKIRDRIVNKELTFDEAARN 344


>gi|319761234|ref|YP_004125171.1| ppic-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans BC]
 gi|317115795|gb|ADU98283.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans BC]
          Length = 275

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 63/183 (34%), Gaps = 21/183 (11%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLK----KG 293
           E S +  +  +  +   +   E   +  ++F           ++ A+     L+     G
Sbjct: 96  EPSEEACRRYHAAHPTLHGEGERLRLRHVLFAVTPGVDVKQLRQRAESVLLDLRCADDGG 155

Query: 294 KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            +F + A +     S      LG  ++        A  IF  A+ G  + ++H  FG  +
Sbjct: 156 VRFAEAARQWSNCPSGQQGGELGWLTQADCA-PEFAREIFGKAEVGVLSRLVHSRFGLHV 214

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
             V   +    + F+EV+  +A  +R            ++  + LA    ++ +      
Sbjct: 215 VEVCEREAGRALVFEEVQASVALLLRQQ----AWINALRQYLQLLAGAAEVEGVQLDAAD 270

Query: 411 VSI 413
             +
Sbjct: 271 TPL 273


>gi|281423985|ref|ZP_06254898.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris F0302]
 gi|281401910|gb|EFB32741.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris F0302]
          Length = 477

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 58/398 (14%), Positives = 124/398 (31%), Gaps = 62/398 (15%)

Query: 250 NDELQAEYEKNKEKYFS-PEIRTVEQLVF------------PNQKEADEAFQSLKKGKKF 296
             E +  Y   + +  S   +  V  ++               ++  D  +++LK G  F
Sbjct: 111 EAEARRIYTLTQHQVDSLGGMVKVRHILLGLGQRAPKSTETEVKQRIDSIYKALKAGADF 170

Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            ++A     ++G +L+  SL                 + L KKG+ +       GY I  
Sbjct: 171 SEMARKYSDDKGSALAGGSLPWLQPGQTL-PEFEAQAYRL-KKGEMSLPFLSPAGYHIIL 228

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           + +   S  + +  ++ DI   +      +K+ +D    E   A  T+   I  ++++  
Sbjct: 229 LED--KSNFLPYDSLRNDILCFIDQRNLRDKLIDDRLN-ERAQATHTTPAAILEKQRMEL 285

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
                            +       + ++    +D+    D         Y     K+  
Sbjct: 286 EKNDPSLKYLIQEYHDGLLLFEISNRTIWEKAARDEAGLID---------YFNHNKKKYR 336

Query: 473 PARDRKLEEVLTDV--KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
            +  R        +   K+   VK   +   KA+            F   G  L      
Sbjct: 337 WSSPR----YKGVIFHVKEVSDVKKVTKALKKAD------------FEKWGSILEKQFNQ 380

Query: 531 TNQINRMDNENKFFGYDGI---SQVFS--GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
             +I     +  F   D     S++F    P   +K +P           V   K+   +
Sbjct: 381 NGEIRVKAEKGIFKQGDNAWIDSEIFKHGAPPTPLKDYPFSG--------VCGKKLKAPK 432

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
                   +     + +    I  L+++Y V+++ N++
Sbjct: 433 TMSDVRKQVLSDYQEAMERQWIKDLRAKYPVSINQNVL 470



 Score = 37.7 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 43/113 (38%), Gaps = 27/113 (23%)

Query: 19  VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE--------------- 63
           V++ +  L++G     FS S    V++V  + V  S F  ++++                
Sbjct: 7   VIISLAMLLYG--SMAFSQSNDPVVMTVNGKPVLRSEFEYAYRKNNSAGVIDRKSVEEYA 64

Query: 64  ----------LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
                        ++ ++  + + +   +   D++I  +L++ A ++     I
Sbjct: 65  ELFIDYKLKVEAALAAQLDTLTSFKEEFAGCRDQQIRPSLINDADIEAEARRI 117


>gi|325108901|ref|YP_004269969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           brasiliensis DSM 5305]
 gi|324969169|gb|ADY59947.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           brasiliensis DSM 5305]
          Length = 365

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 70/169 (41%), Gaps = 11/169 (6%)

Query: 229 YKRISYILFDVHEKE-KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
            + + + +  + +   ++++IS  ++Q  ++++              ++  N + A+E +
Sbjct: 148 RRDVIWPMIALRKLAGEEVQISQADMQRAFQRDYGP-----RVRCRMIMMDNVRRANEVW 202

Query: 288 QSLKKGKK-FIQLAEEQGKSLSDISLGSFSKE---YIPDVSLADSIFSLAKKGDFTPVIH 343
           +   +    F +LA E     +  SLG        Y  + +L D+ F L + G+ + +I 
Sbjct: 203 EKANRTPDEFDKLAREYSVESNSRSLGGSIPPISRYSGNQNLEDAAFRL-QPGEVSGLIQ 261

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               YVI              ++V  ++  Q+   K  E+V   ++ L+
Sbjct: 262 VENHYVILKCEGHTEQVVTDIKDVWDELHAQLVEEKTQERVALVFENLK 310



 Score = 38.0 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 40/126 (31%), Gaps = 30/126 (23%)

Query: 33  ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92
           +L     S  +  V  Q +    +    ++                      + +++L+N
Sbjct: 53  SLGQPQQSPALARVNGQTIT---YDIVARECFER------------------IGEEVLEN 91

Query: 93  LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS--HDVFVSRLA-REGINEK 149
           +++   +    E  G++     +  E+ +         KF+   D +   L    G++  
Sbjct: 92  MINRTVIHVETERRGVQVTEADINNEVTKIA------GKFNLPVDTWYQMLQTERGLSPM 145

Query: 150 EYIDHY 155
           +Y    
Sbjct: 146 QYRRDV 151


>gi|86130559|ref|ZP_01049159.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
 gi|85819234|gb|EAQ40393.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
          Length = 484

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 55/378 (14%), Positives = 119/378 (31%), Gaps = 60/378 (15%)

Query: 167 MFVGGMRPSNLLLDQAKR---FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
             +G +  S LL  QA +      + R    +    +   +       V+  + +    +
Sbjct: 99  QVMGNLLESKLLAHQAVQDSLIVQDARVNSEVDQIIQRFSSQLGSEQKVVEFYKKDNMAD 158

Query: 224 YRAPE---YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY--FSPEIRTVEQLVF- 277
            RA      K I        +  + ++++ DE++  +E   E           + ++V  
Sbjct: 159 LRAELFGIRKDIILSELMNDKIIETVDVTPDEVKTFFESIPEDQVPTVGVELEISRIVIE 218

Query: 278 --PNQKEADEAFQSLK--------KGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVS 324
              +++E  +    LK         G  F   A    +     S G      +       
Sbjct: 219 PKASEEERQKVIDRLKGFRRDILENGSSFATKAVLYTQDPGSRSEGGLMVIDRNTPLVKE 278

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR----ITKA 380
             D  FSL + G+ +      FG+ I +V   +          +KDI + +         
Sbjct: 279 FRDVAFSL-QDGEISEPFETEFGFHIVYVEKTRGE--------RKDIRHILLVPEIKEAQ 329

Query: 381 SEKVKEDYKRLEEFLALGT-SMDEISRR--------EKIVSIDLPLV---DFAGKDVKGK 428
            E+ K+  K + + +  G  + +E ++             ++ +P      F    V   
Sbjct: 330 EEEAKDLVKLVRKRIIDGELTFEEAAKEFSDEEETKYDGGTLTIPQTGSRRFELTKVDPD 389

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSK---------DHTVALPDGSYMWVQIKESIPARDRKL 479
             + I   E+    +   D   +          ++ +      Y    + + I  ++  L
Sbjct: 390 IYSKIDDLEEGEVSLVFTDQTRTGQKQYLLYSVNNRLEEHKADY----VNDYIKIKELAL 445

Query: 480 EEVLTDVKKDWKTVKTAE 497
            +      + W+  K AE
Sbjct: 446 RQKQIKAIEKWQEEKIAE 463


>gi|149907522|ref|ZP_01896269.1| survival protein surA [Moritella sp. PE36]
 gi|149809192|gb|EDM69121.1| survival protein surA [Moritella sp. PE36]
          Length = 428

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 80/224 (35%), Gaps = 22/224 (9%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           ++Y+     +I        +  ++I IS+ ++        E+        V  ++     
Sbjct: 125 NDYKEEIRTQILTNEVQRMQMRRRITISDQDVDNLIAIIDEQGQKNRQYRVNHIMLRVPN 184

Query: 282 EADEA------------FQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLA 326
           EAD A               L  G+ F  LA       K+L     G  +   +P    A
Sbjct: 185 EADNATMEALQTKIADIQTQLNAGEPFANLALALSAGPKALDGGDWGWMNINEMP-TLFA 243

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKAS 381
           +++ + AKKGD    I    G  I  VS+++   TV  +EV      I     +   KA 
Sbjct: 244 EAVTN-AKKGDIIGPIRSGAGLHIIQVSDMRGVETVLTKEVNARHILIKPSVILSDDKAQ 302

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
             + E   R++   A    + +    +   ++    + +A  ++
Sbjct: 303 SLLNEYLTRIKSGDAEFAELAKAYSDDTGSAVKGGELGWADPNI 346



 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/408 (11%), Positives = 119/408 (29%), Gaps = 63/408 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  V  + +  S   N+  + +   + K G  + S+      L ++ LD L+  +  
Sbjct: 25  DEVIAIVNEEVILASDV-NTLTRSVTARATKAGQTLPSQEV----LTQQALDKLIIDSLQ 79

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + +G+   + ++   +        K +  + +     +  +G +  +Y +     +
Sbjct: 80  LQMAKKMGMRISNAQLEDTLNNI----AKGDNQTVEQLRQSVVADGGDFNDYKEEIRTQI 135

Query: 160 S-----RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
                 R  +        +  + L+        +NR      +  R      + +   L 
Sbjct: 136 LTNEVQRMQMRRRITISDQDVDNLIAIIDEQGQKNRQYRVNHIMLRVPNEADNATMEALQ 195

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKE-----------------KKIEISNDE----- 252
                 +    A E      +      K                      ++N +     
Sbjct: 196 TKIADIQTQLNAGEPFANLALALSAGPKALDGGDWGWMNINEMPTLFAEAVTNAKKGDII 255

Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQ----SLKKG 293
                     +    +    +    +      ++       +  +A          +K G
Sbjct: 256 GPIRSGAGLHIIQVSDMRGVETVLTKEVNARHILIKPSVILSDDKAQSLLNEYLTRIKSG 315

Query: 294 -KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA----KKGDFTPVIHGSFGY 348
             +F +LA+           G       P++ +    F LA    KKG+ +P    S G+
Sbjct: 316 DAEFAELAKAYSDDTGSAVKGGELGWADPNIYVP--AFKLALQDLKKGEISPTFRSSHGW 373

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
            I  + + +   T      ++     +   +A+E+ +     L++   
Sbjct: 374 HIVQLIDRRTQDTTDKAN-RQKAWQLLYNRRAAEESQSWLNELKQEAY 420


>gi|145218834|ref|YP_001129543.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145204998|gb|ABP36041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 439

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 80/269 (29%), Gaps = 35/269 (13%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRTVEQLV---------- 276
           E +    I     +K   + I   E+ + Y  N++   + PE  +  Q++          
Sbjct: 134 EIRSQQMIETLRRQKFSGVTIGYGEVMSFYRDNRDAMPTLPEEVSFSQILKFPGVTRAAK 193

Query: 277 FPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFS 331
              +K+ ++  +    G   F +LA               LG   +  +      D+ + 
Sbjct: 194 ASARKKIEDIEKKFTTGFLSFDELARRYSDDPGSAQLGGDLGFVQRGELVKP-FEDAAYG 252

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           L K G  + ++   +G+ I      +         V+  +    R  +   +     + +
Sbjct: 253 L-KDGHVSGIVETRYGFHIIQRLGREGRSI----HVRHILVAFDRSDRDEAETVALLEAI 307

Query: 392 EEFLALGT-SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
              L  G  S  E++R+     +   L          +           L  + G    L
Sbjct: 308 RSGLLEGKGSFAEMARKYSDDPVSASLGGAVLASGSSRPYLDPRSLRPELQAIIG---GL 364

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKL 479
                ++ P         ++  P R    
Sbjct: 365 RTQGEISHP---------RKITPPRGEPF 384


>gi|239630128|ref|ZP_04673159.1| ase protein prsA [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301067278|ref|YP_003789301.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus casei str.
           Zhang]
 gi|239527740|gb|EEQ66741.1| ase protein prsA [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439685|gb|ADK19451.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus casei str.
           Zhang]
          Length = 299

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 26/187 (13%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             S   +   ++ YK  Y              R+   + +          +K  ++S  +
Sbjct: 76  SVSTKTVNDAYDSYKQQYGENFDAFLSQNGFSRSSFKESLRTNFLSEVALKKLKKVSESQ 135

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+A ++  + K       TV+ ++  ++  A +    L  GK F  LA+      +    
Sbjct: 136 LKAAWKTYQPK------VTVQHILTSDEDTAKQVISDLAAGKDFATLAKTDSIDTATKDN 189

Query: 313 G----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
           G      S     D +  D+ + L         +  + GY +  +  I      +F   K
Sbjct: 190 GGKISFESNNKTLDATFKDAAYKLKNGDYTQTPVKVTDGYEVIKM--INHPAKGTFTSSK 247

Query: 369 KDIANQM 375
           K +   +
Sbjct: 248 KALTASV 254


>gi|15676260|ref|NP_273394.1| putative cell-binding factor [Neisseria meningitidis MC58]
 gi|121635519|ref|YP_975764.1| hypothetical protein NMC1825 [Neisseria meningitidis FAM18]
 gi|161870724|ref|YP_001599897.1| cell-binding factor, putative [Neisseria meningitidis 053442]
 gi|218768879|ref|YP_002343391.1| putative periplasmi hypothetical protein [Neisseria meningitidis
           Z2491]
 gi|254805619|ref|YP_003083840.1| Parvulin-like peptidyl-prolyl isomerase [Neisseria meningitidis
           alpha14]
 gi|304386526|ref|ZP_07368814.1| conserved hypothetical protein [Neisseria meningitidis ATCC 13091]
 gi|7225566|gb|AAF40788.1| putative cell-binding factor [Neisseria meningitidis MC58]
 gi|120867225|emb|CAM10994.1| putative periplasmi hypothetical protein [Neisseria meningitidis
           FAM18]
 gi|121052887|emb|CAM09239.1| putative periplasmi hypothetical protein [Neisseria meningitidis
           Z2491]
 gi|161596277|gb|ABX73937.1| cell-binding factor, putative [Neisseria meningitidis 053442]
 gi|254669161|emb|CBA07861.1| Parvulin-like peptidyl-prolyl isomerase [Neisseria meningitidis
           alpha14]
 gi|254670178|emb|CBA05266.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis alpha153]
 gi|254671970|emb|CBA04400.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis alpha275]
 gi|261391870|emb|CAX49329.1| conserved hypothetical periplasmic protein [Neisseria meningitidis
           8013]
 gi|304339355|gb|EFM05427.1| conserved hypothetical protein [Neisseria meningitidis ATCC 13091]
 gi|316984350|gb|EFV63324.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|319411180|emb|CBY91585.1| conserved hypothetical periplasmic protein [Neisseria meningitidis
           WUE 2594]
 gi|325128931|gb|EGC51785.1| hypothetical protein NMXN1568_0307 [Neisseria meningitidis N1568]
 gi|325130875|gb|EGC53605.1| hypothetical protein NMBOX9930304_0328 [Neisseria meningitidis
           OX99.30304]
 gi|325134926|gb|EGC57558.1| hypothetical protein NMBM13399_0343 [Neisseria meningitidis M13399]
 gi|325138885|gb|EGC61435.1| hypothetical protein NMBES14902_0329 [Neisseria meningitidis
           ES14902]
 gi|325140994|gb|EGC63500.1| hypothetical protein NMBCU385_0305 [Neisseria meningitidis CU385]
 gi|325143031|gb|EGC65383.1| hypothetical protein NMB9615945_0390 [Neisseria meningitidis
           961-5945]
 gi|325145140|gb|EGC67422.1| hypothetical protein NMBM01240013_0366 [Neisseria meningitidis
           M01-240013]
 gi|325198965|gb|ADY94421.1| conserved hypothetical protein [Neisseria meningitidis G2136]
 gi|325199539|gb|ADY94994.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325202835|gb|ADY98289.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
 gi|325203458|gb|ADY98911.1| conserved hypothetical protein [Neisseria meningitidis M01-240355]
 gi|325205422|gb|ADZ00875.1| conserved hypothetical protein [Neisseria meningitidis M04-240196]
          Length = 288

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 80/253 (31%), Gaps = 19/253 (7%)

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
             +    ++      +    +     + ++  + KR   +          +         
Sbjct: 41  AAFRAENSRAEDTPQLRQSLLENEVVNTVVAQEVKRLKLDR---------SAEFKNALAK 91

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVH---EKEKKIEISNDELQAEYEKNKEKYF 265
             A   +  +  K +++      + Y L          K   +S  E++A Y+     Y 
Sbjct: 92  LRAEAKKSGDDKKPSFKTVWQ-AVKYGLNGEAYALHIAKTQPVSEQEVKAAYDNISGFYK 150

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG----KSLSDISLGSFSKEYIP 321
             +   + +++   ++ A +A   LK  K F  + ++         +   +G    + + 
Sbjct: 151 GTQEVQLGEILTDKEENAKKAVADLKAKKGFDAVLKQYSLNDRTKQTGAPVGYVPLKDLE 210

Query: 322 D--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
                L  +I  L K       +     Y + +V++ +     SF E+K  IA  ++  +
Sbjct: 211 QGVPPLYQAIKDLKKGEFTATPLKNGDFYGVYYVNDSREVKVPSFDEMKGQIAGNLQAER 270

Query: 380 ASEKVKEDYKRLE 392
               V     +  
Sbjct: 271 IDRAVGALLGKAN 283


>gi|119513160|ref|ZP_01632209.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nodularia spumigena
           CCY9414]
 gi|119462181|gb|EAW43169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nodularia spumigena
           CCY9414]
          Length = 252

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 86/243 (35%), Gaps = 27/243 (11%)

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN----------A 211
              V       + ++ + D  +++  E    +   +            +           
Sbjct: 17  NQAVKYLQASGKLAHFIGDILRQYVIEQEIQNRDDIQISPALTEQTIIDFRLKNQLNDPQ 76

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
              +W ++   +Y          I F    ++ K+ I+  ++   + + K      +   
Sbjct: 77  TFQEWLQQNATDYAT----FYESIAFSFKLEKLKVLIAEPKISEYFIERKIFL---DRVI 129

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
           V +++  NQ+ A+E    +++G  F QLA+E   S     +  +G  S+  +PD     +
Sbjct: 130 VSRIIVDNQEIAEELQTQIEEGGSFEQLAKEYSLSEDRMVNGMMGPVSRGTMPDQL--RA 187

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           +  +A  G     I     Y +  V    P+   S +++   +   ++     + + E  
Sbjct: 188 VIDIANPGKVVGPIEIEGRYGLFRVEQFLPA---SLEDM--QLKQALQNELFEKWLVEKI 242

Query: 389 KRL 391
           ++L
Sbjct: 243 QKL 245


>gi|74662494|sp|Q7RYY4|PIN4_NEUCR RecName: Full=Peptidyl-prolyl cis-trans isomerase pin-4;
           Short=PPIase pin-4; AltName: Full=Parvulin-14;
           Short=Par14
          Length = 130

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA   ++ G  F  +A E  +  +    SLG   K  + D       
Sbjct: 41  VRHILCEKHGKKEEALAKIRDGADFGAVAREYSEDKARTGGSLGWKQKGTL-DPEFEKVA 99

Query: 330 FSLAKKGDFTPVI---HGSFGYVIAHVSNIK 357
           F+L      +P I      FGY I  V   K
Sbjct: 100 FALETSSTSSPKIGEVKTQFGYHIIMVEGKK 130


>gi|281421754|ref|ZP_06252753.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella copri
           DSM 18205]
 gi|281404249|gb|EFB34929.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella copri
           DSM 18205]
          Length = 484

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 66/214 (30%), Gaps = 35/214 (16%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             ++ +    ++D I ++   V       +  +  W        +  EY++ S       
Sbjct: 102 AVQKLFLHQAAIDSIEVSESEVMNGI---DEQINSWVSMIGSREKLEEYRKQSITQMRQQ 158

Query: 241 E----------------KEKKIEISNDELQAEYEKNKEKY--FSPEIRTVEQLVFP---- 278
                              K I++S  +++  ++        F P    VE L       
Sbjct: 159 MHDDFKNQQLIQKMKQELVKDIKVSPAQVRKYFKDLPADSIPFVPTEVEVEILTMQPRIP 218

Query: 279 ------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADS 328
                  + +  E    + KG+  F  LA    +      +G    +    + D + A+ 
Sbjct: 219 LEEINRVKNQLREFTDRVNKGETSFATLARLYSEDPGSARMGGEMDYIGRGMLDPAFANV 278

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
            F+L      + ++   FGY I  + + +     
Sbjct: 279 AFNLTDPKKISKIVESEFGYHIIQLIDKRGDKIK 312


>gi|114564788|ref|YP_752302.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
 gi|114336081|gb|ABI73463.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
          Length = 92

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIF 330
            ++  +Q +A++  + L  G KF  LA++      + S  +LG F K  +         F
Sbjct: 9   HILVKHQTQAEDIIKQLNNGAKFDVLAKKHSSCPSAKSGGNLGEFKKGQMV-PPFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
                G+          FG+ +  V
Sbjct: 68  ----NGELITPHLVKTKFGWHVVKV 88


>gi|268316845|ref|YP_003290564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
 gi|262334379|gb|ACY48176.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
          Length = 458

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 67/524 (12%), Positives = 152/524 (29%), Gaps = 126/524 (24%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  VG + +  S    ++   L    Q+     + E      L  + L+ L+    L + 
Sbjct: 31  VAVVGNELILRSEVD-AF---LAGYLQQQRIPYSDE------LWLEALNQLIDQKVLAEH 80

Query: 103 IE-DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
              D  ++    RV   +                                          
Sbjct: 81  ARRDTTIQISDDRVEQALQE--------------------------------------RL 102

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
             ++    G  R   +      +   E R                               
Sbjct: 103 NQLMQQVGGQTRLEEIYGKTLTQLKAELR------------------------------- 131

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY--FSPEIRTVEQLV--- 276
           +++R  E           + K ++I I+  E++A +E+         P++  +  +V   
Sbjct: 132 EDFR--EQMLAETFR---NRKLQQIRITPSEVRAWFEQFPTDSLPTLPDLVRLSHIVRYP 186

Query: 277 ---FPNQKEADEAFQSLKKG-----KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD- 327
                 ++EA E   +++         F  +A    +     + G     +IPD  LAD 
Sbjct: 187 RPSEKARQEAFEIASAIRDSIVSGRSSFEDMARRFSEDPGSAAAG----GHIPDTRLADL 242

Query: 328 -----SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF-------QEVKKDIANQM 375
                ++ +    G+ +      FG  I  V+  +    + F        E + D +  +
Sbjct: 243 VPEFAAVAARIPIGEISQPFETPFGVHILRVNRRQ-GDLIDFNHILIRIDESQADPSEAI 301

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI-- 433
              +A       Y      +A   S +E +  +    +D        +  +   V +   
Sbjct: 302 AYLEAVRDSILQYNIPFGLMARRHSEEEATAAQGGRVVD-------PRTGERDLVLSALD 354

Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
           P  ++ +  +   +     +  +     +Y  V++   +P+    LE     +++     
Sbjct: 355 PTWQRTIDTLEVGEISHPAEAVLLDGRRAYHIVRLDRFVPSHRVSLETDYARIEQLALQE 414

Query: 494 KTAEEVSSKANQLVLEYS-KEGKNFRDIGKNLGASLLTTNQINR 536
           K    +    N+L      +     R++ +     ++T+    R
Sbjct: 415 KRQRVLRQWLNELRQSVVIRLAGKARELAERYPDKIVTSTLAQR 458


>gi|253700225|ref|YP_003021414.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
 gi|251775075|gb|ACT17656.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
          Length = 93

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADS 328
              ++   ++E       ++ G  F   A E     S      LG F    +      + 
Sbjct: 6   ARHILVATEQECVALKTKIEAGADFGDCARENSLCPSGNQGGRLGEFRPGQMV-REFDEV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +FS  + G     +   FGY +  + +   
Sbjct: 65  VFS-GEVGKVLGPVKTQFGYHLIEIMSRTA 93


>gi|114320159|ref|YP_741842.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114226553|gb|ABI56352.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 260

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----------NQKEADEAFQSLKK-GK 294
           +      +  +E+N + + +P++  V  ++              ++ A+   + L+    
Sbjct: 83  QADEATCRRWFEQNPDHFRTPDLAEVRHILVAGHPEDLEEREQARQTAEGLIRQLQADPA 142

Query: 295 KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F  LA        S     LG  S+         D++  L   G     I   +G+ + 
Sbjct: 143 AFPALATAHSRCPSSEQGGLLGQVSRGETV-PEFEDAVLRLP-VGLAPQPIKTRYGFHVV 200

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            V    P   + F+ V + IA  +        + +
Sbjct: 201 EVLQRIPGTALPFEAVHERIAEYLEAVSRQRALNQ 235


>gi|261493819|ref|ZP_05990333.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261495044|ref|ZP_05991511.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309286|gb|EEY10522.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261310522|gb|EEY11711.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 314

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 108/384 (28%), Gaps = 88/384 (22%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           + K    V      +               V  V    +               + + +G
Sbjct: 3   LVKSLFAVAVATMSLT----QTAHAFEERVVALVNDTPI-----------MQSQVQRVLG 47

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
               +E A+   +D+ I D LV  A      ++ G++     V   +    +     N  
Sbjct: 48  KKKATETAQRAAIDQVIDDMLVQQAM-----KEAGVKVSPAAVNQAVENVAI----QNGI 98

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRS 191
           ++   +  L  +GI  +++  +  + ++   V        ++ +   +    +       
Sbjct: 99  TYGQLLDALDYQGITLEQFKRNIAQQMAMEQVRHISISKSIQVAPQQVQALAK------- 151

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
              ++  ++    +   S                     RIS+IL   +      +    
Sbjct: 152 --ELMAKDKAAGKLKTVSGKE-----------------HRISHILLKTNPILNDAQ---- 188

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDI 310
                                       + +       +  GK  F + A+      +  
Sbjct: 189 ---------------------------AKAKLSSLTADINSGKISFEEAAKAHSVDYASG 221

Query: 311 SLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           + G    F+   I D + A+ + S  K    +      FG+ I  V++ +     +    
Sbjct: 222 TDGGDLGFNFLEIYDPAFAN-VASKIKPNQISAPFKSQFGWHILKVTDTRNG-DRTEDAY 279

Query: 368 KKDIANQMRITKASEKVKEDYKRL 391
            +    Q+   +A E  K+  K L
Sbjct: 280 HQRAYQQLVNKQAEEASKDWVKAL 303


>gi|83816066|ref|YP_445916.1| peptidylprolyl cis-trans isomerase [Salinibacter ruber DSM 13855]
 gi|294507826|ref|YP_003571884.1| peptidyl-prolyl cis-trans isomerase surA [Salinibacter ruber M8]
 gi|83757460|gb|ABC45573.1| peptidylprolyl cis-trans isomerase [Salinibacter ruber DSM 13855]
 gi|294344154|emb|CBH24932.1| Peptidyl-prolyl cis-trans isomerase surA [Salinibacter ruber M8]
          Length = 464

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 63/484 (13%), Positives = 143/484 (29%), Gaps = 92/484 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 VG + V  S      +++    +      +  E           L  LV    L
Sbjct: 43  DRIAAVVGDEIVLKSEVDQLVRRQTRQQNVSYSNSLWME----------ALRQLVDQKLL 92

Query: 100 DQFIE-DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
            +    D  +     ++              ++         + R G +E+     Y K 
Sbjct: 93  AEQARRDTTITVSDQQLS-------------DQLDR-RISQYVERAG-SEERLEQAYGKS 137

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +    +   F   +R   +L  Q +R   ++                 D + + + QWFE
Sbjct: 138 ILE--IKEQFREDLRG-QILSQQLRRRRMQS----------------IDITPSEVRQWFE 178

Query: 219 KYKDNY--RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +   +   + P+  R+S+I+       K  E S  + ++     ++   +          
Sbjct: 179 QIPQDSLPQLPKTVRLSHIV----RYPKPTEASRQQAKSLITSVRDSIVNGG-------- 226

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
                    + +++ +       A     +L+D++L     E+        ++ S    G
Sbjct: 227 --------ASLEAMARQFSAPDAAGTASGALTDVNLNDLVPEFA-------AVASRTPVG 271

Query: 337 DFTPVI--HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA--SEKVKEDYKRLE 392
             +         G+ I  +     S          D+ + +    A   ++ KE    + 
Sbjct: 272 QISQPFYNESQNGFHILRIDAKDGSTV--------DLHHVLIKPNAPTGKRAKEYLSAVR 323

Query: 393 EFLALGT--SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI----PYKEQLLFRVFGK 446
           + L      S + ++RR                   G     +    P   + +  +   
Sbjct: 324 DTLVNNEDVSFERMARRHSEEDRTAQNGGRVTDPESGARDLVLDALGPSWTRTIRPLEAG 383

Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
           D        +   D +Y  V++   +PA    LE     +++     K + ++    +QL
Sbjct: 384 DISEPSRVQLLNDDEAYHIVRLDRRVPAHRASLETDYEQIRQRALQDKRSRKMREWTDQL 443

Query: 507 VLEY 510
             + 
Sbjct: 444 REKI 447


>gi|70726122|ref|YP_253036.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus haemolyticus
           JCSC1435]
 gi|68446846|dbj|BAE04430.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 324

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 67/188 (35%), Gaps = 41/188 (21%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------- 280
           E K+++           K+++S+ EL+               +    ++   +       
Sbjct: 114 EQKKLAAY--QKQLLADKVKVSDKELKEN------------TKKASHILIKVKSSSSDKE 159

Query: 281 --------KEADEAFQSLKKGKK-FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLAD 327
                   ++A++  + ++K    F ++A+++    S    D SLG   K  +       
Sbjct: 160 GLSDKKAKEKAEKIQKEVEKNPDKFGEIAKKESMDSSSAKKDGSLGYVVKGQMV-SKFEK 218

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           ++F L K+G  + V+   +GY +             F + K  +  ++   K  +  K  
Sbjct: 219 ALFKL-KEGQVSDVVKTDYGYHVIK-----ADKESDFDKQKSKLKAKLIEQKVQKDPKIL 272

Query: 388 YKRLEEFL 395
               ++ L
Sbjct: 273 TNAYKDLL 280


>gi|242279456|ref|YP_002991585.1| SurA domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242122350|gb|ACS80046.1| SurA domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 312

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/383 (10%), Positives = 108/383 (28%), Gaps = 89/383 (23%)

Query: 21  LFVPFLI-WGLSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +   FL    +  A F+ +    V      V  + V              ++ Q  G  +
Sbjct: 4   IIAGFLASMIIGSASFATAEEKVVDGIVAVVNGEVVTMYELNRKL---APIMKQFDGKSL 60

Query: 76  NSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           ++  A  +  + ++ILD  ++   +DQ  + + ++     V  E+               
Sbjct: 61  SAVEAEQLKRVRQQILDRFINEIIIDQESKRLKVDVSAQDVDNEVKAIKE---------- 110

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN-RSVD 193
                   +  ++++++                         L       F  +  + + 
Sbjct: 111 --------KSNLSDEDFERQL--------------------ELQKTNLAAFKEKIGKDIR 142

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
              L +  V +    ++  +   +                                    
Sbjct: 143 KHRLLSYKVKSKVVVTDDEIKAAWNS---------------------------------- 168

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGK-SLSDIS 311
                   ++    +   ++ ++FP    AD+  + +  G+  F + A++      S   
Sbjct: 169 -----TRTDQGEVAKSVHLKLILFPENVSADQVREQIVAGETTFEEAADKYTTGPGSGSG 223

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
                 E+           +  K G  +          +  + +   +   SF++ K++I
Sbjct: 224 GDLGVLEWNDLAQTWHEALTGLKPGGISQPFEVQSFKALLKLDSYVNTEAASFEDSKQEI 283

Query: 372 ANQMRITKASEKVKEDYKRLEEF 394
             ++   K  E   +  K+L E 
Sbjct: 284 YQKLYRQKQDELFADFIKKLREK 306


>gi|163781566|ref|ZP_02176566.1| hypothetical protein HG1285_01748 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882786|gb|EDP76290.1| hypothetical protein HG1285_01748 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 275

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 65/150 (43%), Gaps = 7/150 (4%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
             ++  +S+ E++A Y  NK +++ P    + ++V  ++ +A   +++L+ G        
Sbjct: 120 LVRETSVSDGEIEAYYILNKREFYYPNQVKLLRVVADSRDKAYRVYKALRSGGN----VP 175

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
            +   +       +S + +P            + G  +  I    GY+I  +++ + S  
Sbjct: 176 RREGIVVGRER-WYSLQALPKRVKRR--LYPYRVGVVSRPIKLETGYLILKITDKRKSGV 232

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +   EVK+ +  ++   K  E ++E +K  
Sbjct: 233 MPLSEVKEKVKRKLLRIKRQEVLREWFKEA 262



 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/209 (10%), Positives = 54/209 (25%), Gaps = 60/209 (28%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
            + +G   V  VG + +    F + +      +        + +R  +    K+ L   +
Sbjct: 13  LTFAGQGIVAKVGDRVITKGEFNSLFSFYWKEMLH-----FSPKRP-TFEDRKRFLFRYI 66

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
            G  ++    D+G+  D G V   +           + + D                   
Sbjct: 67  KGLIVEDLAPDMGIRVDDGEVLRRLRSW-------GRRNPD------------------- 100

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
                                 L++        E      +             S+  + 
Sbjct: 101 --------------------PRLVMFARMELLLERIERRLVR--------ETSVSDGEIE 132

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKE 243
            ++   K  +  P   ++  ++ D  +K 
Sbjct: 133 AYYILNKREFYYPNQVKLLRVVADSRDKA 161


>gi|24372226|ref|NP_716268.1| peptidyl-prolyl cis-trans isomerase C [Shewanella oneidensis MR-1]
 gi|24346144|gb|AAN53713.1|AE015510_6 peptidyl-prolyl cis-trans isomerase C [Shewanella oneidensis MR-1]
          Length = 92

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 10/88 (11%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  ++++A++  + L  G  F  LA+      S      LG F +  +       
Sbjct: 6   AAVHILVKHKEQAEDIIKQLNNGANFGALAKRYSSCPSAKKGGDLGEFKRGQMV-PQFDK 64

Query: 328 SIFSLAKKGDFTPVI--HGSFGYVIAHV 353
             FS    G+          FG+ +  V
Sbjct: 65  VAFS----GELLVPHLVKTKFGWHVVKV 88


>gi|27367962|ref|NP_763489.1| peptidyl-prolyl cis-trans isomerase ppiC [Vibrio vulnificus CMCP6]
 gi|37676090|ref|NP_936486.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
 gi|320158234|ref|YP_004190612.1| peptidyl-prolyl cis-trans isomerase ppiC [Vibrio vulnificus
           MO6-24/O]
 gi|27359535|gb|AAO08479.1| Peptidyl-prolyl cis-trans isomerase ppiC [Vibrio vulnificus CMCP6]
 gi|37200630|dbj|BAC96456.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
 gi|319933546|gb|ADV88409.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio vulnificus
           MO6-24/O]
          Length = 92

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++    LKKG KF  LA++     S      LG F +  +         F
Sbjct: 9   HILVKHKEQAEDIIAQLKKGAKFHVLAKKHSLCPSGKRGGDLGEFKRGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
                G+          FG+ +  V
Sbjct: 68  ----TGEVLTPHLVKTKFGWHVLKV 88


>gi|83591773|ref|YP_425525.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83574687|gb|ABC21238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 444

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/348 (11%), Positives = 86/348 (24%), Gaps = 87/348 (25%)

Query: 17  FLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
            L +  + ++      W +  A  +V        V    V            +       
Sbjct: 30  LLGIALLAWVAVLGCGWPVHTAQAAVPTQRIAAVVNEDAVSLYDLNARIDIVMA-----T 84

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G + NS   R   L  +IL  L+      Q  +   +      + G I R          
Sbjct: 85  GGMPNSPEVRQR-LAPQILRALIDETLKIQEAKRANVTVSTEDINGGIERLE-------- 135

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR- 190
                      +  +        +                                + R 
Sbjct: 136 ----------RQNKLPPGGLEKAFKAAGLDQQ--------------------SLIHQIRA 165

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
            + +I      +    + S   ++ + +  + N   PEY      L   +  +    ++ 
Sbjct: 166 ELGWIKAVQSTLGPRVNVSEDEISLYQQNLQRNLGKPEYLVADIFLPVDNAAQDAEVLT- 224

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSL 307
                                           A    + ++ G  F  LA++      + 
Sbjct: 225 -------------------------------AAQRMIEQMRLGANFAALAQQFSRGPAAQ 253

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
               LG      I D  +  ++ ++A  G+ +  I    GY I  + +
Sbjct: 254 RGGDLGWVGPGEI-DAEVLQALGAMA-PGNLSQPIRTFGGYHILLLRD 299


>gi|326572731|gb|EGE22717.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis BC7]
 gi|326574047|gb|EGE23996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis CO72]
 gi|326577330|gb|EGE27217.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis O35E]
          Length = 367

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 100/331 (30%), Gaps = 65/331 (19%)

Query: 71  IGFVVNSERARSVGLDKKILD--NLVSG--ATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           +G   +  +     LDK+I D  NL++    TL     + G+  D   V  E+   P   
Sbjct: 77  LGRPSSDAQFIKQALDKEIFDSTNLIASSHQTLPNITVN-GVAIDPKAVAAEVQYHPA-- 133

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
              N     +F++                 + L R +V+                 +R +
Sbjct: 134 ---NSQEEALFLAA-----------QALVMRELLRQEVIECLG-------------ERAW 166

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            EN       L  + V A   P  A    ++   +  + +     + +IL     +E + 
Sbjct: 167 LENEEATIAKLLEQKVIAK-SPDKASCQNYYHANQVEFVSMPIMTLRHILLACPPQEGEE 225

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            I   EL+ +  +  ++      R                         FI+ A      
Sbjct: 226 RI---ELKKQARQLIDRLNQSHNRD----------------------SDFIEFACRYSAC 260

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG   K          ++F+L   G     I   +G  +  V   +    +S
Sbjct: 261 PSKDDGGELGVLQKGSTV-PEFESAVFALP-VGISINPIETRYGIHVIEVLQKQEGRQLS 318

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           F+E    I N ++       + +    L + 
Sbjct: 319 FEEAYPIIENHLKQQSFHHSLCDYLFELSQK 349


>gi|90416509|ref|ZP_01224440.1| peptidyl-prolyl cis-trans isomerase C2 [marine gamma
           proteobacterium HTCC2207]
 gi|90331708|gb|EAS46936.1| peptidyl-prolyl cis-trans isomerase C2 [marine gamma
           proteobacterium HTCC2207]
          Length = 93

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++  ++++  +  Q ++ G  F  +A E     S      LG F    +      + 
Sbjct: 6   ARHILVDSEEKCADLKQQIEAGADFANVASEHSSCPSGSRGGDLGQFGPGQMV-REFDEV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +FS  + G     +   FGY +  +++ +
Sbjct: 65  VFS-GELGMVHGPVQTQFGYHLLEITSRE 92


>gi|157962465|ref|YP_001502499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
           ATCC 700345]
 gi|157847465|gb|ABV87964.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
           ATCC 700345]
          Length = 92

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSL 325
             T   L+   + +  E  Q +  G  F  +A+       S     LGSF    +     
Sbjct: 3   QATARHLLVDTEAQCLELKQQILDGADFGDVAKANSSCPSSAQGGDLGSFGPGMMVK-EF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            + +FS     +    +   FGY +  V++ 
Sbjct: 62  DEVVFSAPLN-EVQGPVKTQFGYHLLEVTSR 91


>gi|328768505|gb|EGF78551.1| hypothetical protein BATDEDRAFT_30473 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 127

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 8/102 (7%)

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYI 320
           K  +     V  ++     +  EA + LK G++F ++AE+  +    +  SLG  ++  +
Sbjct: 27  KLKAANSIKVRHILCEKHSKIMEALELLKSGQRFDKVAEQYSEDKAKAGGSLGWMTRGSM 86

Query: 321 PDVSLADSIFSL-----AKKGDFTPVIHGSFGYVIAHVSNIK 357
             V   D+ F L      K     P +  +FGY I  V + K
Sbjct: 87  VGV-FQDAAFLLVPSTPDKPIYTNPPVKSNFGYHIIMVEDRK 127


>gi|195573805|ref|XP_002104882.1| GD21195 [Drosophila simulans]
 gi|194200809|gb|EDX14385.1| GD21195 [Drosophila simulans]
          Length = 130

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G+KF ++A    +  +     LG   +  +      D+
Sbjct: 38  KVRHILCEKQGKITEAMEKLKAGQKFPEVAAAYSEDKARQGGDLGWQIRGAMVGP-FQDA 96

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L            P I   FGY I  V   K
Sbjct: 97  AFALPISTVNNPVYTDPPIKTKFGYHIIMVEGKK 130


>gi|95930624|ref|ZP_01313358.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133276|gb|EAT14941.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 93

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLAD 327
              ++  ++++  E    ++ G   F + A++  +  S      LG F+   +      +
Sbjct: 6   ARHILVSSEEKCLELKSQIEAGATDFAECAQKFSQCPSGRKGGDLGQFAPGQMVK-EFDE 64

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +FS  + G     +   FGY +  V+  
Sbjct: 65  VVFS-GEVGKVLGPVKTQFGYHLIEVTKR 92


>gi|290988271|ref|XP_002676845.1| predicted protein [Naegleria gruberi]
 gi|284090449|gb|EFC44101.1| predicted protein [Naegleria gruberi]
          Length = 113

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 15/106 (14%)

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQG---KSLS 308
           +K  + +      ++     +A+E  + L++G           +F +LAE+         
Sbjct: 10  DKLGTVKEVQARHILCEKMGKAEEVMKKLQEGWLSRDVKVPSSEFGKLAEQYSDCSSKNK 69

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
             +LG F +  +     ++  F+    G+ + +     GY I  V 
Sbjct: 70  GGNLGWFGRTKMVGP-FSEVAFN-TPVGEVSKIFKTEHGYHIVLVE 113


>gi|261344779|ref|ZP_05972423.1| hypothetical protein PROVRUST_06044 [Providencia rustigianii DSM
           4541]
 gi|282567224|gb|EFB72759.1| peptidylprolyl cis-trans isomerase SurA [Providencia rustigianii
           DSM 4541]
          Length = 440

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 92/314 (29%), Gaps = 38/314 (12%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
               YR+   K +       +E  ++I I   E+ A   +   +  +     +  ++ P 
Sbjct: 124 NMAKYRSEIRKEMLLAEVRNNEVRRRITILPQEVDALSNQMDSQANAEMGVNLSHILIPL 183

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--L 325
                       +    +    LKKG  F +LA         +  G+     + ++    
Sbjct: 184 PENPTPEQLATAEALVSKVLSELKKGSDFGKLAIAYSADPQALKGGNMGWSRLQELPVVF 243

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI-------T 378
           +D + S +KKGD    I    G+ I  V+ I           +    + +         T
Sbjct: 244 SDQLKS-SKKGDIVGPIRSGVGFHILRVNEISGGSQQPISVTEVKARHILLKSSPIMDDT 302

Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRRE-KIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
            A +K+ +  + +        S +E ++   +     L   +         + A      
Sbjct: 303 MARQKLTQLSQEI---RNGKISFEEAAKENSEDPGSALKGGELGWNMPDVYDPAFRDALM 359

Query: 438 QLLFRVFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
           +L      +  P S   H + L D   +           D+          +     K  
Sbjct: 360 KLKKGEISQPVPSSFGWHLIQLEDTRNV-----------DKTDAAKKDQAYRLLFNRKFN 408

Query: 497 EEVSSKANQLVLEY 510
           EE  +   +     
Sbjct: 409 EEAQTWMQEQRAAA 422



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/366 (12%), Positives = 106/366 (28%), Gaps = 66/366 (18%)

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI----------ARSPLFHGKDN 130
               L  +I++ LV    + Q    + L      V   I                    +
Sbjct: 62  DDQTLRSQIIERLVMDNIMLQMANQMQLNIPEEAVNATIEDIARQNGLTLAQMEKRLVAD 121

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
             +   + S + +     +  +        R  +  +       SN +  QA      N 
Sbjct: 122 GINMAKYRSEIRK-----EMLLAEVRNNEVRRRITILPQEVDALSNQMDSQANAEMGVNL 176

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRAPEYKRISYILFDVHEKEKKIEI 248
           S   I L     P     + A++++   + K   ++       I+Y       K   +  
Sbjct: 177 SHILIPLPENPTPEQLATAEALVSKVLSELKKGSDFG---KLAIAYSADPQALKGGNMGW 233

Query: 249 SN-DELQAEYEKNKEKYFSPE------------------------------IRTVEQLVF 277
           S   EL   +    +     +                                    ++ 
Sbjct: 234 SRLQELPVVFSDQLKSSKKGDIVGPIRSGVGFHILRVNEISGGSQQPISVTEVKARHILL 293

Query: 278 PN---------QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD---VS 324
            +         +++  +  Q ++ GK  F + A+E  +       G      +PD    +
Sbjct: 294 KSSPIMDDTMARQKLTQLSQEIRNGKISFEEAAKENSEDPGSALKGGELGWNMPDVYDPA 353

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             D++  L KKG+ +  +  SFG+ +  + + + +   +    K      +   K +E+ 
Sbjct: 354 FRDALMKL-KKGEISQPVPSSFGWHLIQLEDTR-NVDKTDAAKKDQAYRLLFNRKFNEEA 411

Query: 385 KEDYKR 390
           +   + 
Sbjct: 412 QTWMQE 417


>gi|167647829|ref|YP_001685492.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter sp. K31]
 gi|167350259|gb|ABZ72994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter sp. K31]
          Length = 372

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 57/183 (31%), Gaps = 16/183 (8%)

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
             E    + I   + E+      S +  +  Y+  + ++ SP +     ++   Q E D 
Sbjct: 70  REETDEEALIRAVLDEEIDIETPSTELCRRIYDTQRSRFTSPALVEAAHILIAPQGEEDA 129

Query: 286 --------AFQSLK----KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
                   A  ++K    +  +F  LA+      S     SLG      +    +  ++ 
Sbjct: 130 HWEAARLTAVDAVKTLTRQPGQFAALAKALSSCPSAEVGGSLGQLGPGDVV-SEIEQALT 188

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +L         +   FG+ +  +        + F  V+  I   +     +         
Sbjct: 189 ALRPGQVLDQPVRSRFGWHVLKLDRRIEGRELPFDYVEDKIRLHLESRAWTAAATRYVSD 248

Query: 391 LEE 393
           L +
Sbjct: 249 LAD 251


>gi|320586255|gb|EFW98934.1| peptidyl-prolyl cis-trans isomerase [Grosmannia clavigera kw1407]
          Length = 139

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLS--DISLGS 314
           +  K      +   V  ++     + +EA   ++ +G KF  +A    +  +    +LG 
Sbjct: 35  DAKKGDVKGAQQINVRHILCEKHAKKEEALAKIRSEGAKFDDVARTFSEDKARQGGTLGW 94

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVI---HGSFGYVIAHVSNIK 357
             +  + D +  +  F+L      +PV+     SFGY I  V   K
Sbjct: 95  KVRGSL-DPAFEEVAFALPASTTVSPVVGEAKTSFGYHIIMVEGRK 139


>gi|149372557|ref|ZP_01891669.1| putative exported peptidyl-prolyl cis-trans isomerase [unidentified
           eubacterium SCB49]
 gi|149354600|gb|EDM43164.1| putative exported peptidyl-prolyl cis-trans isomerase [unidentified
           eubacterium SCB49]
          Length = 490

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 90/261 (34%), Gaps = 59/261 (22%)

Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
           +F  D+    L  +GI  +E        +SR  ++G  +              + Y  + 
Sbjct: 81  EFDIDLSYQELKAQGIPVEE--------ISRCQLMGKLM------------EDKLYAHHA 120

Query: 191 SVDYIVLNNRHVPAIADP----------SNAVLTQWF------EKYKDNYRAPEYKRISY 234
             D I++++  +    D           S   +  ++      E  K+ +   + ++++ 
Sbjct: 121 KQDSIMVSDNEITQQIDQQMEYMVSELGSEEKVAAYYRKESISELRKELFEVNKTQKLAG 180

Query: 235 ILFDVHEKEKKIEISNDELQAEY----EKNKEKYFSPEIRTVEQLVFP---NQKEADEAF 287
            +       + +E++ +E+++ +    E  +  + +     V QLV      Q+   +A 
Sbjct: 181 EMQR--SIIENVEVTPEEVRSFFYNIPEDERPIFSA--EVEVAQLVVEPKITQESRQDAI 236

Query: 288 QSL--------KKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             L        + G  F   A    + G +     +    +         D  FSL + G
Sbjct: 237 DQLNEWRTDILENGSSFATKAVLYSKDGSAQKGGLIAGVRRNSPMAKEFKDQAFSLLE-G 295

Query: 337 DFTPVIHGSFGYVIAHVSNIK 357
           + +      FG+ I  V  I+
Sbjct: 296 EISEPFQTEFGFHILKVDKIR 316


>gi|195062884|ref|XP_001996270.1| GH22285 [Drosophila grimshawi]
 gi|193899765|gb|EDV98631.1| GH22285 [Drosophila grimshawi]
          Length = 130

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA   LK G+KF ++A    +  +     LG   +  +      D+
Sbjct: 38  KVRHILCEKQGKIMEAMDKLKAGQKFPEVATAYSEDKARQGGDLGWQIRGAMVGP-FQDA 96

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L            P I   FGY I  V   K
Sbjct: 97  AFALPISNVNNPIYTDPPIKTKFGYHIIMVEGKK 130


>gi|167624635|ref|YP_001674929.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
 gi|167354657|gb|ABZ77270.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
          Length = 92

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSL 325
             T   L+   + +  +  Q +  G  F  +A+       S     LGSF    +     
Sbjct: 3   QATARHLLVDTEAQCQDLKQQILDGADFGDVAKANSSCPSSAQGGDLGSFGPGMMVK-EF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            + +FS     +    +   FGY +  V++ 
Sbjct: 62  DEVVFSAPLN-EVQGPVKTQFGYHLLEVTSR 91


>gi|302916033|ref|XP_003051827.1| hypothetical protein NECHADRAFT_79295 [Nectria haematococca mpVI
           77-13-4]
 gi|256732766|gb|EEU46114.1| hypothetical protein NECHADRAFT_79295 [Nectria haematococca mpVI
           77-13-4]
          Length = 132

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSF 315
           +    K    +   V  ++     + +EA   L +G KF ++A E  +  +    SLG  
Sbjct: 29  DAGGGKAKGAQSINVRHILCEKHAKKEEALAKLNEGVKFDEVAREFSEDKARQGGSLGWK 88

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVI---HGSFGYVIAHVSNIK 357
           +K  + D    ++ F L      +P        FGY I  V   K
Sbjct: 89  TKGSL-DPKFEEAAFVLETSTTASPKFVEVKTEFGYHIIMVEGRK 132


>gi|50309377|ref|XP_454696.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643831|emb|CAG99783.1| KLLA0E16567p [Kluyveromyces lactis]
          Length = 162

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 28/152 (18%)

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS--------PEIR 270
           K ++ +  PE K   +                D+ +   E+N  +  +           R
Sbjct: 18  KKREYFFNPETKESVWEAPSGT--------DEDQSKKYLEENPLRVRALHLLIKHKDSRR 69

Query: 271 TVEQ----LVFPNQKEADEAF---QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYI 320
                   +     +  +E     + L  G+ F  LA+E+     +     LG F    +
Sbjct: 70  PASHRNENITITKDEAKEELETYIKRLNGGEPFESLAKERSDCSSAKRGGDLGFFGHGEM 129

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
              S   + F+L K    + ++    G  I  
Sbjct: 130 -QPSFEKAAFAL-KIDQVSDIVESDSGLHIIK 159


>gi|39995929|ref|NP_951880.1| peptidyl-prolyl cis-trans isomerase C [Geobacter sulfurreducens
           PCA]
 gi|39982693|gb|AAR34153.1| peptidyl-prolyl cis-trans isomerase C [Geobacter sulfurreducens
           PCA]
          Length = 92

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++  ++ E  +    ++ G +F  +A +     S      LG+F++  +      D
Sbjct: 5   TARHILVSSEAECLQLKAEIEAGAEFADVARQHSLCPSRAQGGDLGTFTQGQMVK-EFDD 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +FS  +       +   FGY +  ++  
Sbjct: 64  IVFS-GEINKVLGPVRTQFGYHLIEITKR 91


>gi|86137742|ref|ZP_01056318.1| hypothetical peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           MED193]
 gi|85825334|gb|EAQ45533.1| hypothetical peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           MED193]
          Length = 266

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 40/229 (17%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
            P  A +          +   E   I  +L     + +    + +E++AE+ ++  ++ S
Sbjct: 62  TPEPAEVE------PGRFETDEEALIRGLL---EARVEVDAPTEEEVRAEWARDPSRFRS 112

Query: 267 PEIRTVEQLVFP-----------NQKEADEAFQSLK-KGKKFIQLAE---EQGKSLSDIS 311
           P +  V  ++               K+A+     LK   K F+ LA+   + G   S  +
Sbjct: 113 PPLWEVSHILCACDPRDKAAKEKALKKANVLNDRLKTNPKDFVALAKTESDCGSKSSGGA 172

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
           LG               +  L K+G+ TP  +    GY I  +  +     + F+  K+ 
Sbjct: 173 LGQLGPGDTV-PEFERYLHHL-KEGEITPVPVLSRHGYHIVRMDAVAEGQELPFEAAKRA 230

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
           I+  M + KAS              +    + E++   +I   DL  V 
Sbjct: 231 IS--MAMEKAS-----------WARSAQAFVQELAAGAEISGADLQPVG 266


>gi|107027409|ref|YP_624920.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116693880|ref|YP_839413.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
 gi|105896783|gb|ABF79947.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116651880|gb|ABK12520.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
          Length = 276

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 74/237 (31%), Gaps = 13/237 (5%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
             V G   +   +D   R   +  S          +        A     +    +   A
Sbjct: 33  ATVNGTPITQADVDTLLRASGQPDSPQIRQAIKNQLITRVLVQQAAEKANYADKPEVKAA 92

Query: 227 PEYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
            +  +++  +   + +  K   +++++++A Y++        E +    +V  +   A  
Sbjct: 93  MQQAKVTAEVQLYLRDHVKPEPVTDEQVKARYDELVAALGKNEYKP-RVIVVKDPVAAAT 151

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLADSIFSLAK 334
               LK GK F  LA +   + S  + G              K     + +A ++  L  
Sbjct: 152 VLSELKAGKSFDGLARQYSLAPSRDTGGELPWVSFNTPAAEGKTAGLPLPVAQALEKLTV 211

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                  I       I  +   +P+    F+  K  +  Q++   A +   +    L
Sbjct: 212 GATTKDSIPVDGVRAIVKLDAKRPTQVPGFETAKPTLQQQLQAIAAEKASAQMIGNL 268



 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 15/96 (15%)

Query: 26  LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
            + G          + TV +V    +  +      +               S +  S  +
Sbjct: 15  ALAGALSGPVHAQTAETVATVNGTPITQADVDTLLR--------------ASGQPDSPQI 60

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            + I + L++   + Q  E     AD   V   + +
Sbjct: 61  RQAIKNQLITRVLVQQAAEKANY-ADKPEVKAAMQQ 95


>gi|325266271|ref|ZP_08132950.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC
           33394]
 gi|324982233|gb|EGC17866.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC
           33394]
          Length = 292

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 95/266 (35%), Gaps = 11/266 (4%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
            + +   G               +    G           + ++        +    + L
Sbjct: 22  QTVVTVNGTKIDSDELDARAKFVQQQSQGQVKDSPELRQFIANEVVVETVVVQEARRLKL 81

Query: 198 N-NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD--VHEKEKKIEISNDELQ 254
           + +         +           + +++A   + ++ +L D       ++  +++++LQ
Sbjct: 82  DQSADYKTAEADARRQARDRGLDKQPDFQANWKRFLNQVLMDVYAQHIVQQNPVTDEQLQ 141

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
             Y   K +Y + +   + +++    ++A  A + L   K F  +A +        +  S
Sbjct: 142 ERYNAIKTRYDNTDEVQIGEIITDKAEQAQAAIRELAAKKSFADVARKYSIDPEVKAGQS 201

Query: 315 FSKEYIPDVSLADS---IFSL---AKKGDFT--PVIHGSFGYVIAHVSNIKPSFTVSFQE 366
              +++  V L ++   IF+     K G+FT   +   +  +V+ ++S  +      F++
Sbjct: 202 AISDFMALVDLKEARPKIFAAVQNLKAGEFTRQALNEDNKAFVVFYMSTRRKIAVEPFEK 261

Query: 367 VKKDIANQMRITKASEKVKEDYKRLE 392
           V++ + N MR  +    V    ++  
Sbjct: 262 VREGLLNNMRQERVQAAVGALMQKAN 287


>gi|300088060|ref|YP_003758582.1| putative protein export protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527793|gb|ADJ26261.1| putative protein export protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 426

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 57/430 (13%), Positives = 139/430 (32%), Gaps = 69/430 (16%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALF--SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           W+    + V  +   I  ++  L    +    TV+++         +  ++      +S+
Sbjct: 35  WIGLGVIGVAALVVSIGVIASWLIPVYLPLQKTVLTINDT-----EYKAAY------VSK 83

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
            + F    +   S      +LD +     +     ++G+      +   I  + L    D
Sbjct: 84  MVNFYTGGDATYSYLYIDLVLDQIEKNQLMKDGAAELGITVSDQEIKDAIKTAEL---DD 140

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           N+ + D+  + L  + +N++ +         +   + M +     +  +  +  +     
Sbjct: 141 NEVTRDIVRASLLYQKLNDEHFDAQVPASGEQRQALVMLLESQEKAETVRSRLSQGE--- 197

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
                    +  V    DP+   L      +   +             +    +++++  
Sbjct: 198 ------SFADIAVELSLDPTTVTLEGDMGYHPPGFLD--------GKLNADGLDERVDAG 243

Query: 250 ND-ELQAEYEKNKEK--------------YFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
              +    Y++NK K                      V  ++ P  ++A+EA Q +  G+
Sbjct: 244 QPGDTGFFYDENKSKKGGFWIVKATERQTADDNTQVQVFGILLPTLEKAEEARQRVLDGE 303

Query: 295 KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIF-SLAKKGDFTPVI-----HG 344
            F  + EE         S   LG  S +   +   AD IF    +  + +  I       
Sbjct: 304 DFATVVEEMTQHVSSKASGGDLGLLSADS--EAPYADFIFDENTELNELSQPIFAPTADT 361

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
           + G+    V++++ S   S ++         R     +   E  ++LE          E+
Sbjct: 362 TGGWWFYQVASVEQSRLYSEED---------RTQLIEDVFTEWMEQLEAAAEDDIIRVEL 412

Query: 405 SRREKIVSID 414
           ++  K +  +
Sbjct: 413 TQEMKDLIAE 422



 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 99/306 (32%), Gaps = 53/306 (17%)

Query: 244 KKIEISNDELQA---EYEKNKEKYFSP-----EIRTVEQLVFPNQKEADEAFQSLKKGKK 295
              E++ D ++A     + N E + +      E R    ++  +Q++A+     L +G+ 
Sbjct: 139 DDNEVTRDIVRASLLYQKLNDEHFDAQVPASGEQRQALVMLLESQEKAETVRSRLSQGES 198

Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF----- 346
           F  +A E     +    +  +G     ++     AD    L ++ D        F     
Sbjct: 199 FADIAVELSLDPTTVTLEGDMGYHPPGFLDGKLNAD---GLDERVDAGQPGDTGFFYDEN 255

Query: 347 -----GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
                G+ I   +  + +   +  +V   +   +          E  +   + +  G   
Sbjct: 256 KSKKGGFWIVKATERQTADDNTQVQVFGILLPTL----------EKAEEARQRVLDGEDF 305

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH------- 454
             +                      G ++  +    +  +  F  D+    +        
Sbjct: 306 ATVVEEM---------TQHVSSKASGGDLGLLSADSEAPYADFIFDENTELNELSQPIFA 356

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE-EVSSKANQLVLEYSKE 513
             A   G + + Q+     +R    EE  T + +D  T    + E +++ + + +E ++E
Sbjct: 357 PTADTTGGWWFYQVASVEQSRLYS-EEDRTQLIEDVFTEWMEQLEAAAEDDIIRVELTQE 415

Query: 514 GKNFRD 519
            K+   
Sbjct: 416 MKDLIA 421


>gi|206561958|ref|YP_002232721.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia J2315]
 gi|198037998|emb|CAR53944.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia J2315]
          Length = 272

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 78/244 (31%), Gaps = 13/244 (5%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           ++T      V G   +   +D   R   +  S          +        A     +  
Sbjct: 22  AQTAATVATVNGTPITQTDVDTLLRASGQPDSPQIRQAIKNQLITRVLVQQAAEKANYAD 81

Query: 220 YKDNYRAPEYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             +   A +  +++  +   + +  K   +++++++A Y++        E +    +V  
Sbjct: 82  KPEVKAAMQQAKVTAEVQLYLRDHVKPEPVTDEQVKARYDELVAALGKNEFKP-RLIVVK 140

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLAD 327
           +   A      LK GK F  LA +   + S  + G              +     + +A 
Sbjct: 141 DPVAAATVLSELKAGKSFDGLARQYSVAPSRDTGGELPWVSFNTPAVEGRTAGLPLPVAQ 200

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           ++  L+        I       I  +   +P+    F+  K  +  Q++   A +   + 
Sbjct: 201 ALEKLSVGAVTKDSIPVDGVRAIVKLDAKRPTQVPGFETAKPTLQQQLQAIAAEKASAQM 260

Query: 388 YKRL 391
              L
Sbjct: 261 IGNL 264



 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 15/96 (15%)

Query: 26  LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
            + G          ++TV +V    +  +      +               S +  S  +
Sbjct: 11  ALAGALSGPVHAQTAATVATVNGTPITQTDVDTLLR--------------ASGQPDSPQI 56

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            + I + L++   + Q  E     AD   V   + +
Sbjct: 57  RQAIKNQLITRVLVQQAAEKANY-ADKPEVKAAMQQ 91



 Score = 37.3 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 52/202 (25%), Gaps = 20/202 (9%)

Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD----VKKDWK 491
            +Q   +    D P  K         + + + +++ +       E+V       V    K
Sbjct: 70  VQQAAEKANYADKPEVKAAMQQAKVTAEVQLYLRDHVKPEPVTDEQVKARYDELVAALGK 129

Query: 492 TVKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---------INRMDN 539
                  +  K   A   VL   K GK+F  + +    +                  ++ 
Sbjct: 130 NEFKPRLIVVKDPVAAATVLSELKAGKSFDGLARQYSVAPSRDTGGELPWVSFNTPAVEG 189

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
                       +    V  V    I       + K+   +   V   +     L Q + 
Sbjct: 190 RTAGLPLPVAQALEKLSVGAVTKDSIPVDGVRAIVKLDAKRPTQVPGFETAKPTLQQQLQ 249

Query: 600 KDLLD----SVIAYLKSQYSVT 617
               +     +I  L     +T
Sbjct: 250 AIAAEKASAQMIGNLLKDAKIT 271


>gi|164425050|ref|XP_957324.2| hypothetical protein NCU06433 [Neurospora crassa OR74A]
 gi|157070769|gb|EAA28088.2| predicted protein [Neurospora crassa OR74A]
          Length = 131

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA   ++ G  F  +A E  +  +    SLG   K  + D       
Sbjct: 41  VRHILCEKHGKKEEALAKIRDGADFGAVAREYSEDKARTGGSLGWKQKGTL-DPEFEKVA 99

Query: 330 FSLAKKGDFTPVI---HGSFGYVIAHVSNIKP 358
           F+L      +P I      FGY I  V     
Sbjct: 100 FALETSSTSSPKIGEVKTQFGYHIIMVEGFHA 131


>gi|209809291|ref|YP_002264829.1| peptidyl-prolyl cis-trans isomerase C [Aliivibrio salmonicida
           LFI1238]
 gi|208010853|emb|CAQ81253.1| peptidyl-prolyl cis-trans isomerase C [Aliivibrio salmonicida
           LFI1238]
          Length = 92

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++  + L KG KF  LA++     S      LG F K  +         F
Sbjct: 9   HILVKHKEQAEDIIKQLNKGAKFHVLAKKYSSCPSGKKGGDLGEFKKGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GETLVPHLVKTKFGWHVIKV 88


>gi|260909467|ref|ZP_05916171.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260636392|gb|EEX54378.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 483

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/325 (12%), Positives = 84/325 (25%), Gaps = 87/325 (26%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           VG + +  S    +      + ++  G             D  I + L            
Sbjct: 63  VGDEPILKSDVEAA-----RLQAENEGHKF------KGNPDCSIPEQLAVQKLFLHQAAI 111

Query: 106 IGLEADHGRVWGEIARSPLF--HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
             LE     +   I     +      +K   + +           K+ I    + +    
Sbjct: 112 DSLEVSESEISQGIEEQINYWIQMVGSKEKLEEYR----------KQTITEMRQSMH--- 158

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
                       +   ++      E             + +    S A + ++F+    +
Sbjct: 159 -----------DDYKNNRLIAMMKEK------------LVSDVKVSPADVRKFFKDLPAD 195

Query: 224 Y--RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
                P    +  I  +   K +++    D+L+                           
Sbjct: 196 SIPMVPTMVEVEIITQNPKVKTEEVNRVKDQLREY------------------------- 230

Query: 282 EADEAFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
                   + KG+  F  LA    E+ G +     LG   +    D + A   F+L    
Sbjct: 231 -----TDRVTKGETTFATLARLYSEDPGSARQGGELGFTGRAAF-DPAFAAVAFNLTDPN 284

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFT 361
             + ++   FGY I  + + +    
Sbjct: 285 KISKIVETEFGYHIIQLIDKRGDKV 309


>gi|227530453|ref|ZP_03960502.1| peptidylprolyl isomerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349631|gb|EEJ39922.1| peptidylprolyl isomerase [Lactobacillus vaginalis ATCC 49540]
          Length = 310

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 68/203 (33%), Gaps = 35/203 (17%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI--------------EISNDE 252
             S+  +   +  YK+ Y +     +        + +++I               I+N +
Sbjct: 70  QVSDKQVNAQYNTYKNQYGSQFSAVLQQQGLTEKKLKQQIRSNLCLEAAVRSYTHITNAQ 129

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG----KKFIQLAEEQGKSLS 308
           +  +++K + K  + E      ++  ++ +A      L       K F +L + +    S
Sbjct: 130 INKQWKKYEPKVQTAE------ILVGSKDDAQSIIDQLNNSDHPYKTFKKLVKSKSTDAS 183

Query: 309 DISLGSFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
             + G     +       D +   + F L      T  +    GYV+ ++    P+    
Sbjct: 184 TKNAGGKVAAFDNTSTSVDSAYKKAAFKLKTGEYTTEPVKTDDGYVVIYMIE-HPAKGK- 241

Query: 364 FQEVKKDIANQMRITKASEKVKE 386
               K    N ++     EK+ +
Sbjct: 242 ----KSQHINDLKTQIVQEKMND 260



 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 65/201 (32%), Gaps = 44/201 (21%)

Query: 8   ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
            S+  +A I    L +P              GS  V +    K+    + N  K      
Sbjct: 2   KSKKLIAMIACATLVLPLA----------ACGSKAVATTSGGKITQEEYYNEMKTTTN-- 49

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
                              K++L  ++    L+   ++ G +    +V    A+   +  
Sbjct: 50  ------------------GKQVLQQMILDKVLE---KEYGKQVSDKQVN---AQYNTYKN 85

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD-QAKRFY 186
           +        F + L ++G+ EK+        L    +          +N  ++ Q K++ 
Sbjct: 86  QYGS----QFSAVLQQQGLTEKKLKQQIRSNLC---LEAAVRSYTHITNAQINKQWKKYE 138

Query: 187 FENRSVDYIVLNNRHVPAIAD 207
            + ++ + +V +     +I D
Sbjct: 139 PKVQTAEILVGSKDDAQSIID 159



 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 17/162 (10%)

Query: 484 TDVKKDWKT----VKTAEEV---SSKANQLVLEYSKEG---KNFRDIGKNLGASLLTTNQ 533
             + K WK     V+TAE +      A  ++ + +      K F+ + K+      T N 
Sbjct: 128 AQINKQWKKYEPKVQTAEILVGSKDDAQSIIDQLNNSDHPYKTFKKLVKSKSTDASTKNA 187

Query: 534 ---INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN--SKVGPVQEKD 588
              +   DN +           F          P++    YVV  +    +K    Q  +
Sbjct: 188 GGKVAAFDNTSTSVDSAYKKAAFKLKTGEYTTEPVKTDDGYVVIYMIEHPAKGKKSQHIN 247

Query: 589 KFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYLD 628
              + + Q    D   L  V++ +  + +V++ DN ++  +D
Sbjct: 248 DLKTQIVQEKMNDSKFLHKVVSNVLKKGNVSIKDNDLKNIMD 289


>gi|326567917|gb|EGE18014.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis BC1]
          Length = 360

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 100/331 (30%), Gaps = 65/331 (19%)

Query: 71  IGFVVNSERARSVGLDKKILD--NLVSG--ATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           +G   +  +     LDK+I D  NL++    TL     + G+  D   V  E+   P   
Sbjct: 70  LGRPSSDAQFIKQALDKEIFDSTNLIASSHQTLPNITVN-GVAIDPKAVAAEVQYHPA-- 126

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
              N     +F++                 + L R +V+                 +R +
Sbjct: 127 ---NSQEEALFLAA-----------QALVMRELLRQEVIECLG-------------ERAW 159

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            EN       L  + V A   P  A    ++   +  + +     + +IL     +E + 
Sbjct: 160 LENEEATIAKLLEQKVIAK-SPDKASCQNYYHANQVEFVSMPIMTLRHILLACPPQEGEE 218

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            I   EL+ +  +  ++      R                         FI+ A      
Sbjct: 219 RI---ELKKQARQLIDRLNQSHNRD----------------------SDFIEFACRYSAC 253

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG   K          ++F+L   G     I   +G  +  V   +    +S
Sbjct: 254 PSKDDGGELGVLQKGSTV-PEFESAVFALP-VGISINPIETRYGIHVIEVLQKQEGRQLS 311

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           F+E    I N ++       + +    L + 
Sbjct: 312 FEEAYPIIENHLKQQSFHHSLCDYLFELSQK 342


>gi|163748477|ref|ZP_02155731.1| parvulin-like peptidyl-prolyl isomerase [Shewanella benthica KT99]
 gi|294142261|ref|YP_003558239.1| peptidyl-prolyl cis-trans isomerase C [Shewanella violacea DSS12]
 gi|161332055|gb|EDQ02732.1| parvulin-like peptidyl-prolyl isomerase [Shewanella benthica KT99]
 gi|293328730|dbj|BAJ03461.1| peptidyl-prolyl cis-trans isomerase C [Shewanella violacea DSS12]
          Length = 92

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++  + LKKG KF  LA++     S     SLG F K  +         F
Sbjct: 9   HILVKHKEQAEDIIKQLKKGVKFDVLAKKHSSCPSGKKGGSLGEFKKGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
                G+          FG+ +  V
Sbjct: 68  ----TGELITPHLVKTKFGWHVIKV 88


>gi|297733955|emb|CBI15202.3| unnamed protein product [Vitis vinifera]
          Length = 175

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA++ L+ G           +F +LA E  +  S      LG F +
Sbjct: 77  KARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKLAAEYSECPSGKKGGDLGWFPR 136

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      D  FS    G  +     + GY I      K
Sbjct: 137 GKMAGP-FQDVAFS-TVIGATSAPFKSTHGYHIILCEGRK 174


>gi|225457367|ref|XP_002284794.1| PREDICTED: similar to peptidyl-prolyl cis-trans isomerase PPIC-type
           family protein isoform 1 [Vitis vinifera]
          Length = 144

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA++ L+ G           +F +LA E  +  S      LG F +
Sbjct: 46  KARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKLAAEYSECPSGKKGGDLGWFPR 105

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      D  FS    G  +     + GY I      K
Sbjct: 106 GKMAGP-FQDVAFS-TVIGATSAPFKSTHGYHIILCEGRK 143


>gi|225457365|ref|XP_002284796.1| PREDICTED: similar to peptidyl-prolyl cis-trans isomerase PPIC-type
           family protein isoform 2 [Vitis vinifera]
          Length = 158

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA++ L+ G           +F +LA E  +  S      LG F +
Sbjct: 60  KARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKLAAEYSECPSGKKGGDLGWFPR 119

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      D  FS    G  +     + GY I      K
Sbjct: 120 GKMAGP-FQDVAFS-TVIGATSAPFKSTHGYHIILCEGRK 157


>gi|152993831|ref|YP_001359552.1| peptidyl-prolyl cis-trans isomerase C [Sulfurovum sp. NBC37-1]
 gi|151425692|dbj|BAF73195.1| peptidyl-prolyl cis-trans isomerase C [Sulfurovum sp. NBC37-1]
          Length = 93

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLAD 327
              ++  ++    E  + +  G+  F   A+E     S      LG+FS+  +       
Sbjct: 6   ARHILVNDEALCKELKEKINSGETTFEAAAKEYSTCPSGARGGELGTFSQGQMV-PEFDK 64

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +F+  + G     +   FGY +  ++  
Sbjct: 65  VVFN-DEVGIVHGPVKTQFGYHLLEITER 92


>gi|223939125|ref|ZP_03631008.1| hypothetical protein Cflav_PD1553 [bacterium Ellin514]
 gi|223892174|gb|EEF58652.1| hypothetical protein Cflav_PD1553 [bacterium Ellin514]
          Length = 329

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 81/253 (32%), Gaps = 19/253 (7%)

Query: 156 TKMLSRTDVVGMF-VGGMRPSNLLLDQAKRFYFENRSVDYIVLN-NRHVPAIADPSNAVL 213
            + L +  ++    +   + + L  D   R  +E+  V  +              S   +
Sbjct: 72  KQALLQEMILHELNLQKAKVAGLENDAEVRRTYEDVLVARVKETQLTSRLEAVKVSADEI 131

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
              +++    Y  P   +++ I    + K    +I+  E +               +   
Sbjct: 132 RAAYDRDIAKYTRPAKAKLALIYIKANSKLSAEKIAELEGR----------MHEAQKQAH 181

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
            L           F  +       Q +  QG  +     G     +     +  + F+L 
Sbjct: 182 TLATATPG-----FGRIAVDFSDDQPSRYQGGDVGWYDEGLVEYRW--PKEVVAAGFALK 234

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            KG+ + VI  + G+ +    +++       ++ +  I  ++   K  +  +   + +  
Sbjct: 235 AKGEISDVIKTADGFYLVMKLDLRDQVITPLEQAQASIERRLLSEKRRQLEETFVREMRA 294

Query: 394 FLALGTSMDEISR 406
           F  + T  D +++
Sbjct: 295 FAPVQTDSDALAK 307


>gi|197119010|ref|YP_002139437.1| PpiC-type peptidylprolyl cis-trans isomerase [Geobacter
           bemidjiensis Bem]
 gi|197088370|gb|ACH39641.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           bemidjiensis Bem]
          Length = 93

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADS 328
              ++   ++E       ++ G  F   A E     S      LG F    +      + 
Sbjct: 6   ARHILVATEQECVALKTKIESGADFGDCARESSLCPSGNQGGRLGEFRPGQMV-REFDEV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +FS  + G     +   FGY +  + +   
Sbjct: 65  VFS-GEVGKVLGPVKTQFGYHLIEIMSRTA 93


>gi|297263527|ref|XP_002798823.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Macaca mulatta]
          Length = 197

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 105 KVRHILCEKHGKIMEAVEKLKSGMRFNEVASQYSEDKARQGGDLGWMTRGSMVGP-FQEA 163

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FG  I  V   K
Sbjct: 164 AFALPVSGMDKRVFTDPPVKTKFGDHIIMVEGRK 197


>gi|120599379|ref|YP_963953.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|146292625|ref|YP_001183049.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|120559472|gb|ABM25399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|145564315|gb|ABP75250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|319425929|gb|ADV54003.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens 200]
          Length = 92

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
             T   L+  ++++     Q +  G  F Q+A       S      LGSF    +     
Sbjct: 3   QATARHLLVSSEEQCQALKQQIIDGADFAQIARAHSSCPSGAQGGELGSFGPGMMV-REF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            + +FS     +    +   FGY +  V++ 
Sbjct: 62  DEVVFSAPLN-EVQGPVKTQFGYHLLEVTSR 91


>gi|316976102|gb|EFV59445.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Trichinella
           spiralis]
          Length = 422

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 13/93 (13%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-------DISLGSFSKEYIPDV 323
            V  ++     +A+EA + LK G+KF  +A    +  +          LG   +  +   
Sbjct: 53  KVRHILCEKLSKANEAMEKLKAGEKFNIVASSYSEDKARQGCIVLQGDLGWMVRGSMVGP 112

Query: 324 SLADSIFSLA-----KKGDFTPVIHGSFGYVIA 351
              D+ F L      K     P +   FGY I 
Sbjct: 113 -FQDAAFGLPISTVDKPVFTDPPVKTKFGYHII 144


>gi|298480175|ref|ZP_06998373.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           D22]
 gi|298273456|gb|EFI15019.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           D22]
          Length = 460

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/367 (10%), Positives = 100/367 (27%), Gaps = 54/367 (14%)

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI----ADPSN 210
               +     +       +        + +     R      L  + +          + 
Sbjct: 97  QRVDMMTNMYIQQIGSREKMEEYFNKTSTQIRETLRDNARDGLTVQKMQQKLVGEIKVTP 156

Query: 211 AVLTQWFEKYKDNYR--APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           A + ++F+    +     P    +  I         +IE     L+              
Sbjct: 157 AEVRRYFKDLPQDSIPYIPTQVEVQIITLQPKIPISEIEDVKKTLRDY------------ 204

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323
                                + KG+  F  LA    E++  ++     G   +  + D 
Sbjct: 205 ------------------TDRVTKGEIDFSTLARLYSEDKASAIKGGECGFMGRG-MMDP 245

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           + A+  FSL      + ++   FG+ I  +   +     +       +  ++   + +E 
Sbjct: 246 AYANVAFSLQDPKKVSKIVESEFGFHIIQLIEKRGDRVNTR---HILLRPKVSEKELTEA 302

Query: 384 VKEDYKRLEEFLALGTSMDEIS-------RREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
                   ++  A   + D+ +              I + + + +G      ++  +P  
Sbjct: 303 CARLDSIADDIRANKFTFDDAAAVISQDKDTRNNHGIMVNINENSGVTTSKFQMQDLPQD 362

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
              +       +       +   DG  +   V++K  I      + E   D+K+     +
Sbjct: 363 VAKVVDKMNVGEISKAFTMINEKDGKEVCAIVKLKAKINGHKATIAEDYQDLKEIVMEKR 422

Query: 495 TAEEVSS 501
             E +  
Sbjct: 423 REEMLQK 429


>gi|110082627|dbj|BAE97397.1| probable peptidyl-prolyl cis-trans isomerase [Halomonas
           halodenitrificans]
          Length = 273

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 60/173 (34%), Gaps = 18/173 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS------------LKKGK 294
           E S ++ +  +  + E++  P    V  ++     +  EA  +            ++  +
Sbjct: 95  EPSEEDCRRFHATHAERFSEPTRLRVRHILLAAAPDDAEARDAGYRLGEKLVKQLVEHPE 154

Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           +F + A+      S      LG  +       +  D       +G     +   +G+ + 
Sbjct: 155 RFTEFAQRHSACPSKEEGGELGWLAPGQTV--AELDGALQHLNEGLHDRPLASRYGWHVI 212

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDE 403
            +   +      ++EV + + + +R       ++     L+  +   G S+D+
Sbjct: 213 SIDARQEGRERPYEEVAEHVRHSLREQSTRRALRHYLMALQSEIGVEGISLDD 265


>gi|90424481|ref|YP_532851.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
 gi|90106495|gb|ABD88532.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
          Length = 346

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 82/278 (29%), Gaps = 52/278 (18%)

Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD-VVGM 167
           +     V   I            F      + LAR   +  +       +L+    +   
Sbjct: 77  DITAEEVRAAI-----------SFLDARQQAALAR---DPAQLSQTVRAILANRLALKEA 122

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
                    +++ Q  R         Y  L +   P  + P+ + +   ++        P
Sbjct: 123 LAKKWDQQPVIVAQLARVRESQIVESY--LQSLTTPPESYPNESEIKAVYDANASALMVP 180

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
              +++ I+  V +   K                                  +K+ D+  
Sbjct: 181 RRFQLAQIVVAVAKDADKAAED----------------------------AGRKKLDDVL 212

Query: 288 QSLKK-GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
           +  K  G  F  LA       +    D  +G  ++  +    +   I  LAK G  +  +
Sbjct: 213 KKAKAPGADFAALARSVSDDAATAERDGEIGWAAEPDL-KTEIRSQIVGLAK-GAISEPV 270

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
               G+ I  + + + S   S  EV+  +  ++R  +A
Sbjct: 271 RLDDGWHILKLLDTEASRLRSLSEVRDALVQRIRAERA 308


>gi|59801983|ref|YP_208695.1| hypothetical protein NGO1656 [Neisseria gonorrhoeae FA 1090]
 gi|194099536|ref|YP_002002666.1| Cell-binding factor, putative [Neisseria gonorrhoeae NCCP11945]
 gi|239999742|ref|ZP_04719666.1| Cell-binding factor, putative [Neisseria gonorrhoeae 35/02]
 gi|240014900|ref|ZP_04721813.1| Cell-binding factor, putative [Neisseria gonorrhoeae DGI18]
 gi|240017348|ref|ZP_04723888.1| Cell-binding factor, putative [Neisseria gonorrhoeae FA6140]
 gi|240081490|ref|ZP_04726033.1| Cell-binding factor, putative [Neisseria gonorrhoeae FA19]
 gi|240113770|ref|ZP_04728260.1| Cell-binding factor, putative [Neisseria gonorrhoeae MS11]
 gi|240116505|ref|ZP_04730567.1| Cell-binding factor, putative [Neisseria gonorrhoeae PID18]
 gi|240118728|ref|ZP_04732790.1| Cell-binding factor, putative [Neisseria gonorrhoeae PID1]
 gi|240121970|ref|ZP_04734932.1| Cell-binding factor, putative [Neisseria gonorrhoeae PID24-1]
 gi|240124267|ref|ZP_04737223.1| Cell-binding factor, putative [Neisseria gonorrhoeae PID332]
 gi|240126477|ref|ZP_04739363.1| Cell-binding factor, putative [Neisseria gonorrhoeae SK-92-679]
 gi|240128940|ref|ZP_04741601.1| Cell-binding factor, putative [Neisseria gonorrhoeae SK-93-1035]
 gi|254494530|ref|ZP_05107701.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260439738|ref|ZP_05793554.1| Cell-binding factor, putative [Neisseria gonorrhoeae DGI2]
 gi|268595556|ref|ZP_06129723.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268597591|ref|ZP_06131758.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268599842|ref|ZP_06134009.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268602176|ref|ZP_06136343.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268604442|ref|ZP_06138609.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682896|ref|ZP_06149758.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268685062|ref|ZP_06151924.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268687326|ref|ZP_06154188.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291042988|ref|ZP_06568726.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293398329|ref|ZP_06642520.1| cell-binding factor [Neisseria gonorrhoeae F62]
 gi|59718878|gb|AAW90283.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193934826|gb|ACF30650.1| Cell-binding factor, putative [Neisseria gonorrhoeae NCCP11945]
 gi|226513570|gb|EEH62915.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548945|gb|EEZ44363.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268551379|gb|EEZ46398.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268583973|gb|EEZ48649.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268586307|gb|EEZ50983.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268588573|gb|EEZ53249.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268623180|gb|EEZ55580.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268625346|gb|EEZ57746.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627610|gb|EEZ60010.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291013127|gb|EFE05096.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611253|gb|EFF40337.1| cell-binding factor [Neisseria gonorrhoeae F62]
          Length = 288

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 87/255 (34%), Gaps = 23/255 (9%)

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
             +    ++      +    +     + ++  + KR   +          +         
Sbjct: 41  AAFRAENSRAEDTPQLRQSLLENEVVNTVVAQEVKRLKLDR---------SAEFKDALAK 91

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVH---EKEKKIEISNDELQAEYEKNKEKYF 265
             A   +  +  K +++      + Y L          K   +S  E++A Y+     Y 
Sbjct: 92  LRAEAKKSGDDKKPSFKTVWQ-AVKYGLNGEAYALHIAKTQPVSEQEVKAVYDNISGFYK 150

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
             +   + +++   ++ A +A   LK  K F  + ++   +      G+    Y+P   L
Sbjct: 151 GTQEVQLGEILTDKEENAKKAVADLKAKKGFDAVLKQYSLNDRTKRTGA-PDGYVPLKDL 209

Query: 326 AD------SIFSLAKKGDF--TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
                         KKG+F  TP+ +G F Y + +V++ +     SF E+K  IA  ++ 
Sbjct: 210 EQGVPPLYQAIKDLKKGEFTATPLKNGDF-YGVYYVNDSREVKVPSFDEMKGQIAGNLQA 268

Query: 378 TKASEKVKEDYKRLE 392
            +    V     +  
Sbjct: 269 ERIDRAVGALLGKAN 283


>gi|308388554|gb|ADO30874.1| hypothetical protein NMBB_0386 [Neisseria meningitidis alpha710]
 gi|325136920|gb|EGC59517.1| hypothetical protein NMBM0579_0318 [Neisseria meningitidis M0579]
          Length = 288

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 80/253 (31%), Gaps = 19/253 (7%)

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
             +    ++      +    +     + ++  + KR   +          +         
Sbjct: 41  AAFRAENSRAEDTPQLRQSLLENEVVNTVVAQEVKRLKLDR---------SAEFKNALAK 91

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVH---EKEKKIEISNDELQAEYEKNKEKYF 265
             A   +  +  K +++      + Y L          K   +S  E++A Y+     Y 
Sbjct: 92  LRAEAKKSGDDKKPSFKTVWQ-AVKYGLNGEAYALHIAKTQPVSEQEVKAAYDNISGFYK 150

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG----KSLSDISLGSFSKEYIP 321
             +   + +++   ++ A +A   LK  K F  + ++         +   +G    + + 
Sbjct: 151 GTQEVQLGEILTDKEENAKKAVADLKAKKGFDAVLKQYSLNDRTKQTGAPVGYVPLKDLE 210

Query: 322 D--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
                L  +I  L K       +     Y + +V++ +     SF E+K  IA  ++  +
Sbjct: 211 QGVPPLYRAIKDLKKGEFTATPLKNGDFYGVYYVNDSREVKVPSFDEMKGQIAGNLQAER 270

Query: 380 ASEKVKEDYKRLE 392
               V     +  
Sbjct: 271 IDRAVGALLGKAN 283


>gi|187917921|ref|YP_001883484.1| hypothetical protein BH0039 [Borrelia hermsii DAH]
 gi|119860769|gb|AAX16564.1| hypothetical protein BH0039 [Borrelia hermsii DAH]
          Length = 502

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 115/360 (31%), Gaps = 78/360 (21%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKV------PFSSFINSWK 61
                + L+++   F+I  L   LF  + SS +   G    Q +        + ++NS+ 
Sbjct: 23  GLWGLLALILIVFGFIIAPLMPGLFDTTDSSNL-KFGSYKGQPIYYEKGNKLAQYVNSYS 81

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                + +      ++       +        V         +          +   +  
Sbjct: 82  NFYSKLKK------DNNLDIEYFIWNLAFMKYVEDIAFLDLAKTNSFYVSKNILNKNLMN 135

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
           SP++      FS   +      +    K + +    +LS    +          + + + 
Sbjct: 136 SPVYLDSSGNFSPKRYNKVSDYQKF--KIHSESVENLLSSNMQI-FLSSSFILPDSIPNA 192

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
            K      ++V Y+ L+ +  P         ++ + E+ +  +++ +   I         
Sbjct: 193 IKSMSEARKNVAYVELSYQDFPK------DEVSSYAEQNQKLFKSLDIVSIR-------- 238

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
                                              F N K+A +A++ L KG  F ++A+
Sbjct: 239 -----------------------------------FKNLKDAGDAYEKLSKGMPFEEVAK 263

Query: 302 EQGKSLSDISLGSFSKEYIPDVSL-----AD--SIFSLAKKGDFTPVIHGSFG--YVIAH 352
              + +++    + S++Y  D+ L      D  +IFSL K  +FT  I    G  Y I  
Sbjct: 264 FFSEDVTNFKGVASSRKYYFDLDLMLEKKEDLAAIFSL-KMNEFTSPIKSKNGNEYEIYK 322


>gi|91793769|ref|YP_563420.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
 gi|91715771|gb|ABE55697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
          Length = 92

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSL 325
             T   L+   Q E ++  Q +  G  F Q+A E      +    +LGSF    +     
Sbjct: 3   QATARHLLVSTQVECEDLKQQIIAGADFAQIAREHSSCPSAAEGGNLGSFGPGMMV-QEF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
              +FS     +    +   FGY +  V+  
Sbjct: 62  DAVVFSAPLN-EVQGPVKTQFGYHLLEVTQR 91


>gi|15676261|ref|NP_273395.1| hypothetical protein NMB0346 [Neisseria meningitidis MC58]
 gi|7225567|gb|AAF40789.1| hypothetical protein NMB0346 [Neisseria meningitidis MC58]
 gi|316984351|gb|EFV63325.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325134927|gb|EGC57559.1| hypothetical protein NMBM13399_0344 [Neisseria meningitidis M13399]
 gi|325140995|gb|EGC63501.1| hypothetical protein NMBCU385_0306 [Neisseria meningitidis CU385]
 gi|325145141|gb|EGC67423.1| hypothetical protein NMBM01240013_0367 [Neisseria meningitidis
           M01-240013]
 gi|325199540|gb|ADY94995.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
          Length = 252

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 83/235 (35%), Gaps = 21/235 (8%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
                 ++         S     QA R     R     VL NR +    D  +  +   F
Sbjct: 32  DTLVAQIMQQADRHAEQSQKPDGQAIRNDAVRRLQTLEVLKNRALKEGLD-KDKDVQNRF 90

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +  + ++ A EY R           E+   +S DEL   YE+            ++Q+ F
Sbjct: 91  KIAEASFYAEEYVRF---------LERSETVSEDELHKFYEQQIRMI------KLQQVSF 135

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
             ++EA +A Q L KG  F  L +           G    + +P+   +   F+   +GD
Sbjct: 136 ATEEEARQAQQLLLKGLSFEGLMKRYPNDEQAFD-GFIMAQQLPEPLASQ--FAAMNRGD 192

Query: 338 FT-PVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            T   +     Y +  +S + K      F+ V+  +   +R  KA  K+    + 
Sbjct: 193 VTRDPVKLGERYYLFKLSEVGKNPDAQPFELVRNQLEQGLRQEKARLKIDALLEE 247


>gi|88813286|ref|ZP_01128525.1| peptidyl-prolyl cis-trans isomerase C [Nitrococcus mobilis Nb-231]
 gi|88789458|gb|EAR20586.1| peptidyl-prolyl cis-trans isomerase C [Nitrococcus mobilis Nb-231]
          Length = 93

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
                  ++ P +++  E  + +  G+ F  +A E  K  S      LG F++  +    
Sbjct: 2   AKARARHILVPEEQQCLELKERIDNGEDFAAIAREHSKCPSGQKGGDLGEFTQGQMV-PE 60

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +F+  +       +   FGY +  V    
Sbjct: 61  FDKVVFN-DELNKVHGPVRTQFGYHLLEVLERT 92


>gi|326559933|gb|EGE10332.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 103P14B1]
 gi|326573879|gb|EGE23831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 101P30B1]
          Length = 342

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 100/331 (30%), Gaps = 65/331 (19%)

Query: 71  IGFVVNSERARSVGLDKKILD--NLVSG--ATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
           +G   +  +     LDK+I D  NL++    TL     + G+  D   V  E+   P   
Sbjct: 52  LGRPSSDAQFIKQALDKEIFDSTNLIASSHQTLPNITVN-GVAIDPKAVAAEVQYHPA-- 108

Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
              N     +F++                 + L R +V+                 +R +
Sbjct: 109 ---NSQEEALFLAA-----------QALVMRELLRQEVIECLG-------------ERAW 141

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            EN       L  + V A   P  A    ++   +  + +     + +IL     +E + 
Sbjct: 142 LENEEATIAKLLEQKVIAK-SPDKASCQNYYHANQVEFVSMPIMTLRHILLACPPQEGEE 200

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            I   EL+ +  +  ++      R                         FI+ A      
Sbjct: 201 RI---ELKKQARQLIDRLNQSHNRD----------------------SDFIEFACRYSAC 235

Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
            S      LG   K          ++F+L   G     I   +G  +  V   +    +S
Sbjct: 236 PSKDDGGELGVLQKGSTV-PEFESAVFALP-VGISINPIETRYGIHVIEVLQKQEGRQLS 293

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           F+E    I N ++       + +    L + 
Sbjct: 294 FEEAYPIIENHLKQQSFHHSLCDYLFELSQK 324


>gi|170721642|ref|YP_001749330.1| hypothetical protein PputW619_2461 [Pseudomonas putida W619]
 gi|169759645|gb|ACA72961.1| conserved hypothetical protein [Pseudomonas putida W619]
          Length = 213

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 7/150 (4%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S    V    +        + + L    + +  + N    +   L  + LD L+    L
Sbjct: 19  DSPAARVNGVDIGLLRLERYFSEYLQAQGRAVTSIRNPTLYKR--LRSQALDELIDKELL 76

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G+     +V  ++             S  +F  RLA  G +   Y D+  + L
Sbjct: 77  WQEAQRRGIAISDEQVSAQLGEVEAAFS-----SPALFERRLAEAGFDRAAYADYLHREL 131

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           +   V         P+   ++   +   E 
Sbjct: 132 AAQQVYAQLSAVAEPTQAEVEAFYQANQER 161


>gi|120600309|ref|YP_964883.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|126172833|ref|YP_001048982.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
 gi|146291762|ref|YP_001182186.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|153002247|ref|YP_001367928.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS185]
 gi|160876971|ref|YP_001556287.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS195]
 gi|217974834|ref|YP_002359585.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS223]
 gi|120560402|gb|ABM26329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|125996038|gb|ABN60113.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
 gi|145563452|gb|ABP74387.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|151366865|gb|ABS09865.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS185]
 gi|160862493|gb|ABX51027.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS195]
 gi|217499969|gb|ACK48162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS223]
 gi|315269174|gb|ADT96027.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS678]
 gi|319424998|gb|ADV53072.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens 200]
          Length = 92

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 10/88 (11%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  ++++A++  + L  G  F  LA+      S      LG F K  +       
Sbjct: 6   AAVHILVKHKEQAEDIVKQLNNGANFAVLAKRFSSCPSAKKGGDLGEFKKGQMV-PQFDK 64

Query: 328 SIFSLAKKGDFTPVI--HGSFGYVIAHV 353
             FS    G+          FG+ +  V
Sbjct: 65  VAFS----GELLVPHIVKTKFGWHVVKV 88


>gi|319789938|ref|YP_004151571.1| hypothetical protein Theam_0963 [Thermovibrio ammonificans HB-1]
 gi|317114440|gb|ADU96930.1| hypothetical protein Theam_0963 [Thermovibrio ammonificans HB-1]
          Length = 414

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 139/418 (33%), Gaps = 67/418 (16%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +L    L +  +    +      ++ V  + V +S F          +  ++        
Sbjct: 4   LLVAAVLFFAPAAFSGTCPPDEPLLKVDGRTVNYSYFE--------FVESRLPKWALRRF 55

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
              +   +K+L+ +     +  + E  G               P+   +  KF  D  +S
Sbjct: 56  YSGLSGREKLLEKIGQRQLILTYYEKRGY-----------FNDPVVKRRLEKFKIDELIS 104

Query: 140 RLAREGIN-----EKEYIDHYTKMLS--RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
            L  + ++      +E      K     R  +       ++       + K +    R V
Sbjct: 105 MLVNKRLSEVKVSPEEVEKALEKYPPKERARLRKFVEINIKAHKFEDAERKLYSGAMRGV 164

Query: 193 DYIVLNNRHVPAIADP-------------------SNAVLTQ-------WFEKYKDNYRA 226
             + L+      +                      S   L +       + +        
Sbjct: 165 KIVNLHPEKEGDVVAVYPGGKVTYGELQPLLNGSSSAEALKRAVRDYMLYLKAKAQGLDR 224

Query: 227 PEYKR--ISYILFDVH------EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
            E  +  + Y            E   ++++S+DE++  Y ++K+++ +PE   V    F 
Sbjct: 225 TEKFKNELLYYKESFAVKAFESEIASQVKVSDDEVKRYYREHKQEFRTPERAKVTVYPFE 284

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           +++ A EA Q LKKG    +   ++  S   +       E   +  +A  +F   +KG  
Sbjct: 285 SEEAAKEALQKLKKGIPPAKAIPKEVFSRGRV----VEVEEGQNNPVAQLVF--TEKGKK 338

Query: 339 TPVIHGSFG-YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
             +++   G  ++  +    PS  + + +V   I N++++ K    VK   + L++  
Sbjct: 339 LYLLNVPSGKTLLVVLDRFVPSRVLGYGDVYTTIKNRLKVEKERRLVKRKLEELKKEF 396


>gi|21356303|ref|NP_651364.1| CG11858 [Drosophila melanogaster]
 gi|7301304|gb|AAF56433.1| CG11858 [Drosophila melanogaster]
 gi|17946706|gb|AAL49383.1| RH66629p [Drosophila melanogaster]
 gi|220958600|gb|ACL91843.1| CG11858-PA [synthetic construct]
          Length = 130

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G+KF ++A    +  +     LG   +  +      D+
Sbjct: 38  KVRHILCEKQGKITEAMEKLKAGQKFPEVAAAYSEDKARQGGDLGWQIRGAMVGP-FQDA 96

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L            P I   FGY I  V   K
Sbjct: 97  AFALPISTVNNPVYTDPPIKTKFGYHIIMVEGKK 130


>gi|256820408|ref|YP_003141687.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea DSM 7271]
 gi|256581991|gb|ACU93126.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea DSM 7271]
          Length = 451

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/398 (11%), Positives = 106/398 (26%), Gaps = 83/398 (20%)

Query: 15  KIFLVVLFVPFL--IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           KI+  ++ + F    +  ++    V G      VG   +  S    ++            
Sbjct: 5   KIWSALVILLFTTPFFAQNNERRKVDG--VAAVVGDYLILESDIDKAY------------ 50

Query: 73  FVVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
             +  +   +  +++ ++L  L+             ++     V  ++ +   F      
Sbjct: 51  IDLQQQEVDTREINRCQMLGKLMEDKLYAHQAVQDSVKLTDSEVRDQVNQRIEFLTAQLG 110

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
                 +          K+        L     V M    M+                  
Sbjct: 111 GDIKKLLEFYK------KDDEQSMRDELFNLLKVSMLAQRMK------------------ 146

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
                   + +    + +   +  +F     +    E       L         +   + 
Sbjct: 147 --------QQIIKDIEVTPEEVRTFFNAIPAD----ERPHFGTELEIAQIVVNPVAPKSS 194

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-LSDI 310
             +   + N  K    E                        G  F   A    +   +  
Sbjct: 195 VQKVINQLNDIKKDVEE-----------------------NGMSFSTKAILYSQDRATGG 231

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            + +F++    D +  D  F+L + G+ +     SFG+ I  +  I+         V+  
Sbjct: 232 QVLTFNRNSAFDKAFKDVAFTLRE-GEISKPFESSFGWHIIQMDKIRGKEV----SVRHI 286

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRR 407
           +       +A  + KE   ++ + +     + DE +R 
Sbjct: 287 LLMPEIPQEALNEAKEKIAKIRDRIVNKELTFDEAARN 324


>gi|238897972|ref|YP_002923652.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465730|gb|ACQ67504.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 322

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 60/391 (15%), Positives = 117/391 (29%), Gaps = 82/391 (20%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           + W   + + +L   F ++     +     +  V  V    +  S              +
Sbjct: 2   KNWRIYVLVWLLCSHFTVFSAPKEI-----NKIVAIVNDSVILLSDL-----NHRLKAIK 51

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
                +N        L  +IL+ L+  +   Q    IGL+     +   IA       + 
Sbjct: 52  INANNINQSLPDDAILRHQILERLIVESIQLQIANKIGLKIPDEDLDKIIADI----ARK 107

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYT-KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
           N+ + D   S+LA E IN   Y +    ++L    +       +      +D   +    
Sbjct: 108 NRLTVDQIRSKLASENINYGTYRNEIRNQILISEVLKNAVQPRINILPQEVDSLSKLILN 167

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
                                        EK ++         +S IL  + E   + EI
Sbjct: 168 -----------------------------EKNQNM-----ELNLSQILIPLTENPSQKEI 193

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
              E                 +   +LV   +K A+ A  ++              ++  
Sbjct: 194 DKAE-----------------KKANKLVSQLKKGANFAKLAIAYSAD--------SQAFK 228

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
             ++G    + +P  +L      +  K D    I    G+ I  ++++   F  S     
Sbjct: 229 GGTMGWKKVQELP--TLFSEKLKVIHKFDIIGPIRSGVGFHILRINDLHTIFENS----- 281

Query: 369 KDIANQMRITKASEKVKEDYKR-LEEFLALG 398
           +DI NQ      + K  E  +  ++E  A  
Sbjct: 282 EDIKNQAYKILFNRKFSEQAETWIQEQRASA 312


>gi|312129916|ref|YP_003997256.1| ppic-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
           byssophila DSM 17132]
 gi|311906462|gb|ADQ16903.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
           byssophila DSM 17132]
          Length = 440

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/370 (11%), Positives = 114/370 (30%), Gaps = 41/370 (11%)

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK---DNY-------- 224
            L     ++       +D +++ N  +    D     +   +   K   D +        
Sbjct: 60  ALESMAIQKLLVAKAEIDSVIVENDQIKDQLDARMNQMVTVYGNEKNIVDQFGKSIETLK 119

Query: 225 --RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLV---- 276
                E K             +K+ ++  E++  YE       +   +   + Q+V    
Sbjct: 120 NEMRSELKEQMTAEKMKGVIYEKVSVTPLEVKKFYESIPKDSLWKVGQKVKLSQIVRLAP 179

Query: 277 ------FPNQKEADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLA 326
                      +  +  + ++ G+ F +LA+E    QG + +   LG   +  +      
Sbjct: 180 LTPELRTDLITKLQDIKRRIQSGEDFGKLAKEYSEDQGSAANGGDLGWSKRGMMV-PEFE 238

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            +  SL   G  + ++   +G+ +      +     +   +       +   +    +  
Sbjct: 239 AAAMSL-DTGQISDIVESEYGFHLIQTLAKRGQEYRARHILLMPDYQILSTDEPKRYLDS 297

Query: 387 DYKR-LEEFLALGT-----SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
             K  + + L  G      S DE ++    +  + P    A + +    V   P     +
Sbjct: 298 LRKVIIADTLDWGKMVKLHSQDEFTKDAGGIIAN-PQTGEAWQTID---VNMEPALYIAV 353

Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
             +   D     ++           +++ +        LE+   ++++    +K  E + 
Sbjct: 354 SSLKLGDLSQVVNYRTPQGKTGMRLIKVVDVKKEHVINLEDDYEELRRYTLNIKQNERIE 413

Query: 501 SKANQLVLEY 510
              ++ + E 
Sbjct: 414 QWFSEALAEV 423


>gi|161870723|ref|YP_001599896.1| hypothetical protein NMCC_1796 [Neisseria meningitidis 053442]
 gi|161596276|gb|ABX73936.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 289

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 21/235 (8%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
                 ++         S     QA R     R     VL NR +    D  +  +   F
Sbjct: 69  DTLVAQIMRQADRHAEQSQKPDGQAIRNDAVRRLQTLEVLKNRALKEGLD-KDKDVQNRF 127

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +  + ++ A EY R           E+   +S   L+  YE+            ++Q+ F
Sbjct: 128 KIAEASFYAEEYVRF---------LERSETVSESALRQFYERQIRMI------KLQQVSF 172

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
             ++EA +A Q L KG  F  L +           G    + +P+   +   F+   +GD
Sbjct: 173 ATEEEARQAQQLLLKGLSFEGLMKRYPNDEQAFD-GFIMAQQLPEPLASQ--FAAMNRGD 229

Query: 338 FT-PVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            T   +     Y +  +S + K      F+ V+  +   +R  KA  K+    + 
Sbjct: 230 VTRDPVKLGERYYLFKLSEVGKNPDAQPFELVRNQLEQGLRQEKARLKIDAILEE 284


>gi|66817294|ref|XP_642500.1| hypothetical protein DDB_G0277775 [Dictyostelium discoideum AX4]
 gi|60470582|gb|EAL68561.1| hypothetical protein DDB_G0277775 [Dictyostelium discoideum AX4]
          Length = 124

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 5/92 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSL 325
              V  ++   + +  EA   +K GK F  +A+   +    +S   LG   +  +     
Sbjct: 35  QVKVRHILCEKEAKLMEAVNLIKSGKTFNSVAQSHSEDKARVSSGLLGYIGRGDMV-QEF 93

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            D  F+    G  +      FGY I  V + K
Sbjct: 94  TDRAFN-QPIGVVSEPFRTQFGYHIILVEDKK 124


>gi|260426113|ref|ZP_05780092.1| conserved hypothetical protein [Citreicella sp. SE45]
 gi|260420605|gb|EEX13856.1| conserved hypothetical protein [Citreicella sp. SE45]
          Length = 282

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 9/161 (5%)

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---FQSLK 291
           +LF             D L+  Y +N  ++  P      Q++ P     ++     ++L+
Sbjct: 107 MLFLAEAPAASRTPDTDALETYYRENAARFRQPGRVGFAQVLLPQNAMEEDVSGTLEALR 166

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            G     L        + I        + I  +  A  +  L + G +T  +   +G  +
Sbjct: 167 AGSDPEALGSG-SLLPARIDATPLPGVDRIFGIGFAARLVDLPE-GQWTGPVESGYGRHL 224

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITK---ASEKVKEDY 388
             +  ++P +    + V+  +    R  +   A E   E  
Sbjct: 225 VRLDAMQPGYLPPLEVVRDRVLADWRAQEMKVAREAFTEAL 265


>gi|237714321|ref|ZP_04544802.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
 gi|262408154|ref|ZP_06084701.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645120|ref|ZP_06722845.1| PPIC-type PPIASE domain protein [Bacteroides ovatus SD CC 2a]
 gi|294809728|ref|ZP_06768415.1| PPIC-type PPIASE domain protein [Bacteroides xylanisolvens SD CC
           1b]
 gi|229445485|gb|EEO51276.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
 gi|262353706|gb|EEZ02799.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639544|gb|EFF57837.1| PPIC-type PPIASE domain protein [Bacteroides ovatus SD CC 2a]
 gi|294443062|gb|EFG11842.1| PPIC-type PPIASE domain protein [Bacteroides xylanisolvens SD CC
           1b]
 gi|295088067|emb|CBK69590.1| Parvulin-like peptidyl-prolyl isomerase [Bacteroides xylanisolvens
           XB1A]
          Length = 460

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/367 (10%), Positives = 100/367 (27%), Gaps = 54/367 (14%)

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI----ADPSN 210
               +     +       +        + +     R      L  + +          + 
Sbjct: 97  QRVDMMTNMYIQQIGSREKMEEYFNKTSTQIRETLRDNARDGLTVQKMQQKLVGEIKVTP 156

Query: 211 AVLTQWFEKYKDNYR--APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           A + ++F+    +     P    +  I         +IE     L+              
Sbjct: 157 AEVRRYFKDLPQDSIPYIPTQVEVQIITLQPKIPISEIEDVKKTLRDY------------ 204

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323
                                + KG+  F  LA    E++  ++     G   +  + D 
Sbjct: 205 ------------------TDRVTKGEIDFSTLARLYSEDKASAIKGGECGFMGRG-MMDP 245

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           + A+  FSL      + ++   FG+ I  +   +     +       +  ++   + +E 
Sbjct: 246 AYANVAFSLQDPKKVSKIVESEFGFHIIQLIEKRGDRVNTR---HILLRPKVSEKELTEA 302

Query: 384 VKEDYKRLEEFLALGTSMDEIS-------RREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
                   ++  A   + D+ +              I + + + +G      ++  +P  
Sbjct: 303 CARLDSIADDIRANKFTFDDAAAVISQDKDTRNNHGIMVNINENSGVTTSKFQMQDLPQD 362

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
              +       +       +   DG  +   V++K  I      + E   D+K+     +
Sbjct: 363 VAKVVDKMNVGEISKAFTMINEKDGKEVCAIVKLKAKINGHKATIAEDYQDLKEIVMDKR 422

Query: 495 TAEEVSS 501
             E +  
Sbjct: 423 REEMLQK 429


>gi|53803327|ref|YP_114963.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Methylococcus capsulatus str. Bath]
 gi|53757088|gb|AAU91379.1| PpiC-type peptidylprolyl isomerase domain protein [Methylococcus
           capsulatus str. Bath]
          Length = 312

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 102/299 (34%), Gaps = 61/299 (20%)

Query: 137 FVSRLAREG------INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
           +V+ L R        + ++   +   +++    +    +                 F+  
Sbjct: 63  YVNFLQRNQAYVQKSMTDEGKAEVIREIIGNQLLKDDIIKKGLAKKDATAAELGEAFQK- 121

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
                 L   H P    P    + +++  ++++Y  PE  RIS                 
Sbjct: 122 ------LAKEHFPLPPVPEEDAVYKYYLDHQNDYGIPEMVRIS----------------- 158

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EEQGKS 306
                     + ++  P+  T EQ     Q+  + A + L+ G+ F ++A    E     
Sbjct: 159 ----------QIQFRVPDNATAEQKAAARQRA-EAALRRLEAGEPFPKVAGELTENPSAK 207

Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
                +G   +E   D  L +++ +L K G+ T VI    GY I  +++++ +    +  
Sbjct: 208 PPQGDIGFLPREG--DPWLTEAVRNL-KVGEHTKVIESPAGYEILMLTDVRKALITPYVN 264

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           V+  +  +MR               E+       + ++++  KI  +   L     K V
Sbjct: 265 VRDKVIQRMR-------------GAEQARLRDAYIRDLAKHAKIEIVQEELKPLFPKGV 310


>gi|77361403|ref|YP_340978.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876314|emb|CAI87536.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 93

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
              ++  ++ +  +  + +++G+ F  LA+            +LG F    +        
Sbjct: 6   ARHILVDSEAQCLDLKEKIEQGEDFAVLAKAHSNCPSGQDGGALGEFGPGMMV-PEFDKV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +FS          +   FGY +  V++   
Sbjct: 65  VFSAPIN-QVQGPVQTQFGYHLLEVTSRSE 93


>gi|90022282|ref|YP_528109.1| cell wall hydrolase/autolysin [Saccharophagus degradans 2-40]
 gi|89951882|gb|ABD81897.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus
           degradans 2-40]
          Length = 92

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSL 325
                 ++   + EA++  Q L  G  F  LA++      +     LG F+   +   + 
Sbjct: 3   RAAARHILVKTKSEAEKLKQQLANGADFGTLAKKHSLCASAKQGGDLGEFNPGQMVK-AF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            + +F           I   FG+ +  
Sbjct: 62  DNVVFKKPIL-TVHGPIKTQFGFHLIE 87


>gi|29349256|ref|NP_812759.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570398|ref|ZP_04847807.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6]
 gi|298384796|ref|ZP_06994355.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           1_1_14]
 gi|29341164|gb|AAO78953.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840779|gb|EES68861.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6]
 gi|298261940|gb|EFI04805.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           1_1_14]
          Length = 460

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/367 (10%), Positives = 97/367 (26%), Gaps = 54/367 (14%)

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI----ADPSN 210
               +     +       +        A +     R      L  + +          + 
Sbjct: 97  QRVDMMTNMYIQQIGSKEKMEEYFNKTATQIRETLRENARDGLTVQKMQQKLVGDIKVTP 156

Query: 211 AVLTQWFEKYKDNYR--APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           A + ++F+    +     P    +  I         +IE     L+              
Sbjct: 157 AEVRRYFKDLPQDSIPYIPTQVEVQIITLQPKIPIAEIEDVKRRLRDY------------ 204

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323
                                + KG+  F  LA    E++  ++    L    +  + D 
Sbjct: 205 ------------------TDRVTKGEIDFSTLARLYSEDKASAIKGGELDFMGRGML-DP 245

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           + A+  FSL      + ++   FGY I  +   +     +       +  ++   + +E 
Sbjct: 246 AYANVAFSLQDPKKVSKIVESEFGYHIIQLIEKRGDRVNTR---HILLRPKVSEKELTEA 302

Query: 384 VKEDYKRLEEFLALGTSMDEIS-------RREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
                   ++      + DE +              + +   +  G      ++  +P  
Sbjct: 303 CARLDSIGDDIRQNKFTFDEAASVISQDKDTRNNHGLMVNTNERTGITTSKFQMQDLPQD 362

Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
              +       +       +   DG  +   V++K  I      + E   D+K+     +
Sbjct: 363 VAKVVDKMNVGEISRAFTMINEKDGKEVCAIVKLKAKINGHKATIAEDYQDLKEIVMDKR 422

Query: 495 TAEEVSS 501
             E +  
Sbjct: 423 REEMLQK 429


>gi|241589917|ref|YP_002979942.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12D]
 gi|240868629|gb|ACS66288.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12D]
          Length = 278

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 68/237 (28%), Gaps = 27/237 (11%)

Query: 159 LSRTDVVGMF-VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
           +++  +       G   +  ++   K+              N           AV     
Sbjct: 41  ITQAQLDRAVAQTGAGANPNVVQALKQQLIARELFRQQAAKNPAYEKQPAVQQAVKEAH- 99

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
                          +     + +  +   +++++++A Y+         E +    +  
Sbjct: 100 -------------DAAITQLWLKDNIRPSPVTDEQVKARYDAIVASLGDKEYK-ARVIQV 145

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLA 326
            +   A +    LK+G  F +LA++   + +    G              K     + LA
Sbjct: 146 GDDVTASQVIAQLKQGGDFAKLAQQYSTAPNKARGGEMDWVSFKVPVEDGKTQSMPLPLA 205

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             I +L         +       I  V +++P+   +F  VK  I   +   +    
Sbjct: 206 HEITTLQPGAVSAAPVDAGNQRFIVKVDSVRPTQVPAFDAVKPAIKQALETAELERA 262


>gi|114799875|ref|YP_760276.1| putative peptidylprolyl cis-trans isomerase [Hyphomonas neptunium
           ATCC 15444]
 gi|114740049|gb|ABI78174.1| putative peptidylprolyl cis-trans isomerase [Hyphomonas neptunium
           ATCC 15444]
          Length = 372

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 84/234 (35%), Gaps = 22/234 (9%)

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             PE   I  +L   +E+      +++ ++A Y+ N E + SP +     ++ P    ++
Sbjct: 69  ETPEEALIRAVL---NEEVDADPAADEAVRAVYDGNPEGFRSPPLLEASHILVPPADASE 125

Query: 285 EAFQSLKKGKK------------FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSI 329
           EA+++ ++  +            F ++A  +     +    SLG      +    +  ++
Sbjct: 126 EAYRAAREKARALIADLQANPSGFARMAASRSACPSASEGGSLGQLRPGDVL-PPIWTAL 184

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
            ++ +       +    G+ +  + +      + F  V+  IA Q+   +A    K    
Sbjct: 185 TNMEEGTIRAEPVATEHGWHVLRLDHRSDGERLPFDYVRPHIALQL---EARAWTKSAAL 241

Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
            ++  LA   +   +   +     D   +      + GK ++ +      L   
Sbjct: 242 YVDRLLAESAANPGLCLSDNGRLDDRNGIVARADGLLGKALSDVQMAYGALSEA 295


>gi|119774399|ref|YP_927139.1| peptidyl-prolyl cis-trans isomerase C [Shewanella amazonensis SB2B]
 gi|119766899|gb|ABL99469.1| peptidyl-prolyl cis-trans isomerase C [Shewanella amazonensis SB2B]
          Length = 92

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
             T   L+  +Q++ +   + ++ G  F  +A E     S      LGSF    +     
Sbjct: 3   RATARHLLVSSQEQCEVLKKLIEGGADFADIAREHSACPSGSQGGELGSFGPGMMV-REF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            + +FS          +   FGY +  V++ 
Sbjct: 62  DEVVFSAPLH-VVQGPVKTQFGYHLLEVTSR 91


>gi|163858138|ref|YP_001632436.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Bordetella petrii DSM 12804]
 gi|163261866|emb|CAP44168.1| PPIC-type PPIASE domain protein [Bordetella petrii]
          Length = 248

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 46/159 (28%), Gaps = 15/159 (9%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQS 289
           +  + +  +      +  YE++  ++ S  +  V  ++F           +  A E  Q 
Sbjct: 63  LAAEVRTPQADEAACRRYYEQHPGQFLSGALVEVWHILFQLTPRVDPRRLRARAGEVLQE 122

Query: 290 L--KKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           +       F   A +      +     LG   +          ++F++        ++  
Sbjct: 123 VHRAAPDAFADYARQYSNCMSAQEGGRLGDIGRGDTL-PEFEQAVFAMPAHTLLDRLVQT 181

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             G+ I           ++F  V   IA  +        
Sbjct: 182 RHGFHIVRTGRKVEGTPMAFDAVHARIAAWLAQASERRA 220


>gi|319900078|ref|YP_004159806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           helcogenes P 36-108]
 gi|319415109|gb|ADV42220.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           helcogenes P 36-108]
          Length = 455

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 97/320 (30%), Gaps = 32/320 (10%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK---KIEISNDELQAEYEK--NKEK 263
           S   + ++F K     R          L     ++K   +I+++  E++  ++       
Sbjct: 112 SREKMEEYFNKTSSQIRETLRDNAREGLKVQKMQQKLVGEIKVTPAEVRRYFKDLPQDSI 171

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQ----------SLKKGKKFIQLAEEQGKSLSDISLG 313
            + P    V+ +    +   +E              + KG+ F  LA    +       G
Sbjct: 172 PYIPTQVEVQIITLQPKIPQEEIEDVKRRLREYTDRVNKGESFSMLARMYSEDRGSAIRG 231

Query: 314 ---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-VKK 369
               FS   + D + A   F+L      + ++   +G+ I  +   +     +    +K 
Sbjct: 232 GEIDFSGRGMLDPAYASVAFNLQDPTKVSKIVESEYGFHIIQLIEKRGDRIKTRHILLKP 291

Query: 370 DIANQ------MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
            I  +       R+   ++ ++ +    EE  ++ +   +      ++            
Sbjct: 292 HIPTEALTAGCARLDSIADDIRNNKFSFEEAASVLSQDKDTRNNHGLLPNPNSNTSKFEM 351

Query: 424 DVKGKEVAAIPYKEQL--LFRVFGKDDPLSKDHTVALPD-----GSYMWVQIKESIPARD 476
                E+A +  K ++  +   F      +      +         +      +    +D
Sbjct: 352 QELPPEIAKVVDKMKVGEISEAFTMIPQKTGKEECVIVKLKSRINGHKATIADDYQNLKD 411

Query: 477 RKLEEVLTDVKKDWKTVKTA 496
             LE+    V   W   K  
Sbjct: 412 IVLEKRRDVVLDKWIREKQK 431


>gi|300871204|ref|YP_003786077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brachyspira
           pilosicoli 95/1000]
 gi|300688905|gb|ADK31576.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brachyspira
           pilosicoli 95/1000]
          Length = 295

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 110/365 (30%), Gaps = 97/365 (26%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +S V  VG   + +  F++  K  L + ++ IG  +N +          +  +LV    +
Sbjct: 3   NSIVGVVGSIPITYEDFVSR-KSFLSLQARSIGKKINDDM---------VYKDLVEERIM 52

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
              +++     +   V   +             + D F  +L  EGI+  EY +   K +
Sbjct: 53  YLKLKEYNYVIEENDVSRRLENIAN----QYNLTLDQFAKQLKAEGISYDEYRNSIKKQI 108

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +  ++ G+ V                                     + ++A   +++  
Sbjct: 109 AMENLSGLVVNNT----------------------------------EITDAEADEYYNN 134

Query: 220 YKDN--YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
            KD   +      ++S+I F      +K E                              
Sbjct: 135 SKDKTAFEVDTLVKLSWIFFKATTFTEKGE------------------------------ 164

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGS---FSKEYIPDVSLADSIF 330
             Q+ AD+      +G  F +LA++             LG    +        +  ++  
Sbjct: 165 -KQELADKVRGMAARGNDFAELAKKYSDDEKTKNYGGDLGYNLLYDAGKRSLPAQVNAGL 223

Query: 331 SLA----KKGDFTPVIH-GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
           +LA    K G  + V      G+ I  +  I+         ++  + N +   +  +   
Sbjct: 224 TLAKRGYKVGTVSSVRELVGKGFYIVKIVEIQ----KDMDSIRTRVKNYLSEIRMRDSFV 279

Query: 386 EDYKR 390
           +    
Sbjct: 280 KWLDD 284


>gi|332885978|gb|EGK06222.1| hypothetical protein HMPREF9456_00096 [Dysgonomonas mossii DSM
           22836]
          Length = 673

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 55/377 (14%), Positives = 119/377 (31%), Gaps = 67/377 (17%)

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           G  + E     +  ++ F+L K+GD +  +   +G+ I  +    P    S+ ++K  + 
Sbjct: 296 GVLNLESRLSPTFIEAAFNLKKEGDVSEPVQSEYGFHIIRLLKKIP--VPSYADMKSALK 353

Query: 373 NQ-MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
            + +   K+ E   E  KR+ + L    +     R  +I +   P      K+V      
Sbjct: 354 ARILESDKSEEMTIEKRKRMSQELGFNFNRVAYDRLNEIANKISPKDSSFLKNVDNNNDI 413

Query: 432 AIPYKEQLLFRVFG----------------KDDPLSKDHTVALPDG-------------- 461
              + ++ ++ V                   D P +  +T A+ +               
Sbjct: 414 LFSFGDKKIYTVANFVEYIRLRQNLMDNKPTDAPETVVYTEAINNSLSTDVLKEYFNAYY 473

Query: 462 -----SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
                 Y ++ +    P   ++L+E+   +       K   E ++   + + EY K+ KN
Sbjct: 474 SRCLTDYYYLSLPNREPEYKKQLDEISNGLLSFGVMNKNIWERATTDEKGLSEYFKKNKN 533

Query: 517 FRDIG----------KNLGASLLTTNQINRMDNENKFF----------------GYDGIS 550
               G               +L     +++ +                         GI 
Sbjct: 534 KYSFGGTKYRGLIVYAKDEKALTVATSLSKSEKNRDILIEKIRHALNKDSLRVLMEPGIW 593

Query: 551 QVFSGPVEMVKCFPIEN---GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
                P    K F  +     + Y  F V    V    + +     +       L     
Sbjct: 594 AKGENPYVDNKVFAGKEVKAKMGYPYFIVLGDFVSKPTDYNDVRYAVESDYQALLEQQWK 653

Query: 608 AYLKSQYSVTVHDNLIQ 624
           A L+ +Y V ++++++ 
Sbjct: 654 ADLRKKYKVEINNSVLN 670



 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 58/372 (15%), Positives = 129/372 (34%), Gaps = 63/372 (16%)

Query: 273 EQLVFPNQ-----KEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----------LGSFSK 317
           E++++P       ++A +    L K   F   AE   K LS  +          +G  + 
Sbjct: 136 EKIIYPADTVVLYQKAIDLQGRLSKNG-FA--AEGYSKVLSSSTVLDYNRQNGYIGWVA- 191

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVK---KDIAN 373
            ++ +  +  +I+SL    + +  I  S GY I  V N +P+  +V  ++V      I  
Sbjct: 192 PFMFNAKVEQAIYSLH-VNEVSMPIRCSDGYHIIQVLNKRPAVGSVDIEQVLFNFSRIPA 250

Query: 374 QM-RITKASEKVKEDYKRLEEFLALGTSMDEISR--REKIVSIDLPLVDFAGKDVKGKEV 430
            + +I    +    +Y+ +       +  DE +R  +         +++   +       
Sbjct: 251 DLNQIDSVGKVAWREYRNIRTASDYQSLCDEFTRVMQMGEKGCHFGVLNLESR------- 303

Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD- 489
                    +   F           V    G +  +++ + IP       ++ + +K   
Sbjct: 304 ----LSPTFIEAAFNLKKEGDVSEPVQSEYG-FHIIRLLKKIP--VPSYADMKSALKARI 356

Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK------NLGASLLTTNQINRMDNENKF 543
            ++ K+ E    K  ++  E    G NF  +            S   ++ +  +DN N  
Sbjct: 357 LESDKSEEMTIEKRKRMSQEL---GFNFNRVAYDRLNEIANKISPKDSSFLKNVDNNNDI 413

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFK--VTNSKVGPVQEKDKFISYLTQMMNKD 601
                   +FS      K + + N + Y+  +  + ++K     E   +   +   ++ D
Sbjct: 414 --------LFS--FGDKKIYTVANFVEYIRLRQNLMDNKPTDAPETVVYTEAINNSLSTD 463

Query: 602 LLDSVIAYLKSQ 613
           +L        S+
Sbjct: 464 VLKEYFNAYYSR 475


>gi|295657789|ref|XP_002789460.1| hypothetical protein PAAG_08629 [Paracoccidioides brasiliensis
           Pb01]
 gi|226283794|gb|EEH39360.1| hypothetical protein PAAG_08629 [Paracoccidioides brasiliensis
           Pb01]
          Length = 132

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF ++A E  +  +    SLG   +  + D S   + 
Sbjct: 43  VRHILCEKHSKKEEALEKLRNGAKFDEVAREFSEDKARQGGSLGWKIRGSL-DASFEKAA 101

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           + L +               FGY I  V   K
Sbjct: 102 YDL-EPSTTGNPKWTEVKTGFGYHIIMVEGRK 132


>gi|91200129|emb|CAJ73172.1| Strongly similar to peptidyl-prolyl cis-trans isomerase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 92

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
                 ++   Q+E ++    ++ G++F  +A++  +  S      LG F    +     
Sbjct: 3   RARARHILVSTQQECEDIKSKIQNGEEFATMAQQYSQCPSGKQGGDLGEFGPGQMVK-EF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
              +F   + G     I   FGY +  +++ 
Sbjct: 62  DQVVFR-DEVGKVHGPICTQFGYHLIEITSR 91


>gi|325685772|gb|EGD27846.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 313

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
             S+  +   + KYK  Y +     +SY        ++ +  +N    A  +  K+   +
Sbjct: 80  KVSSKKINAEYNKYKKQYGSNFSTVLSYSGLTTKSFKQNLA-TNLYSVAALKDLKKPTTT 138

Query: 267 PEIR---------TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLG 313
            E           TV+ +V   +  A+   + LK G  F  LA++     +       L 
Sbjct: 139 QEKNWWKSYHTKTTVQHIVVDKKSTAETVIKKLKSGTSFATLAKKYSTDTATKKKAGKLA 198

Query: 314 SF-SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           +F S +     +   +++ L +    T  +  S GY +  V         S+ + K  I 
Sbjct: 199 AFDSTDTSLSSTFKSAVWKLKEGEYTTTPVKTSSGYEVIKVLKTTEKG--SYTKNKSFID 256

Query: 373 NQMRITKASE 382
            Q+    A++
Sbjct: 257 KQLYAKWAAD 266


>gi|37678664|ref|NP_933273.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
 gi|37197404|dbj|BAC93244.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
          Length = 443

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 22/204 (10%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277
           + +R    K ++          ++I I   E+    E   ++  +     +  +      
Sbjct: 140 EEFREQIRKEMAASEARNALVRRRINILPAEVDNLAELLSKETNASVEYRIGHIQLRFTD 199

Query: 278 -----PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSI 329
                  + +A E  + LK+G  F  +A    K   +L     G   KE +P    AD I
Sbjct: 200 GQDKSALEAQAKELVEKLKQGADFSTMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI 258

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRITKASEKV 384
             +  KG          G+ I  + ++K   TV+  EV            +    A  ++
Sbjct: 259 -KMQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILLKPTVILSDEGAQREL 317

Query: 385 KEDYKRLEEFLALGTSMDEISRRE 408
            E  +R+    A   +  E++++ 
Sbjct: 318 NEFIRRI---RAGEATFGELAQQY 338



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/405 (14%), Positives = 126/405 (31%), Gaps = 70/405 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    +  S    + K       +    + +++      L+++I+D L+     
Sbjct: 40  DKVAVIVNDGVILQSDIDTATKTLRANAKKSGQALPDADV-----LNEQIVDKLIIDTLQ 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG+  D  R+   I        ++N  + D   + +A EG++ +E+ +   K +
Sbjct: 95  TQEADRIGVRIDDTRLNQAIEEI----ARNNNQTIDELSAAIASEGVSYEEFREQIRKEM 150

Query: 160 SRTDVVGMFV-GGMRPSNLLLDQAKRFYFE--NRSVDYIV----------LNNRHVPAIA 206
           + ++     V   +      +D       +  N SV+Y +           +   + A A
Sbjct: 151 AASEARNALVRRRINILPAEVDNLAELLSKETNASVEYRIGHIQLRFTDGQDKSALEAQA 210

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRI----SYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                 L Q  +     Y   +  +      +      E      I  D+++    +NK 
Sbjct: 211 KELVEKLKQGADFSTMAYTYSKGPKALQGGDWGWMRKEEMP---TIFADQIKM---QNKG 264

Query: 263 KYFSPEI-----------------------RTVEQLVFP---------NQKEADEAFQSL 290
               P                              ++            Q+E +E  + +
Sbjct: 265 SIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILLKPTVILSDEGAQRELNEFIRRI 324

Query: 291 KKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSF 346
           + G+  F +LA++  +     +         PD         + +L   G  +       
Sbjct: 325 RAGEATFGELAQQYSQDPGSAAQDGELGYQTPDLYVPEFKHQVETLP-VGTISEPFKTVH 383

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G+ I  V + +     +   +K      +   K +E+V    + L
Sbjct: 384 GWHIVEVLDRRE-VDRTDSAMKNKAYRILFNRKFNEEVGAWMQEL 427


>gi|319639214|ref|ZP_07993965.1| hypothetical protein HMPREF0604_01589 [Neisseria mucosa C102]
 gi|317399398|gb|EFV80068.1| hypothetical protein HMPREF0604_01589 [Neisseria mucosa C102]
          Length = 290

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 82/245 (33%), Gaps = 23/245 (9%)

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
              +ML+   V+   V       L LDQ+  F            +     A   P+    
Sbjct: 56  ELRQMLTERQVISTVV-TQEAKKLKLDQSAEFKAALEQARA---DAAKQGADKKPT---F 108

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
              +  ++++     +              ++  +   +++A Y      Y   +   + 
Sbjct: 109 KTEWAAFENDLLGQAF---------AAHIIRQFPVQEKDVKAAYNDFSNFYKGTQEVQLG 159

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP-------DVSLA 326
           ++V  +   A +A   L   K F+ +  +     +    G   K Y+P          L 
Sbjct: 160 EIVTDSNSNAQKAIADLDAKKSFVSVLNQYSIDEAAKKAGGIPKAYVPLKDLQESAPPLY 219

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +++  L K       +     Y + +V++ +     S++  K +I + ++  + +  ++ 
Sbjct: 220 EAVKDLKKGAHTKTPLQNGNLYAVFYVNDRRNVTVPSYEASKNEIGSDLQGARVNAAIQS 279

Query: 387 DYKRL 391
             K+ 
Sbjct: 280 LLKKA 284


>gi|307726843|ref|YP_003910056.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
 gi|307587368|gb|ADN60765.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
          Length = 259

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 18/162 (11%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSL--KKGK- 294
           E + D  +  +     ++   E      ++F           +K A+     L  + G  
Sbjct: 79  EPTEDACRRYHAAQPGRFAVGERVRARHVLFAVTPGLDIGALRKRAESCLLELRCENGTV 138

Query: 295 --KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
             +F ++A +     S      LG    +       A  +F     G    ++H  FG  
Sbjct: 139 SDRFARVARDMSNCPSGAYGGDLGWLRIDECA-PEFAKELFGRPDIGVLPHLVHSRFGLH 197

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +  V    P     F  V++ +A  +R    +  +++    L
Sbjct: 198 VVEVMERDPGIVPEFDTVREAVAQALRQQAFATALRQYISVL 239


>gi|157376732|ref|YP_001475332.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
 gi|157319106|gb|ABV38204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
          Length = 92

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  +++ A++  + L KG KF  LA++     S     SLG F K  +         F
Sbjct: 9   HILVKHKELAEDIIKQLNKGAKFDVLAKKHSTCPSGKKGGSLGEFKKGQMV-PPFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
                G+          FG+ +  +
Sbjct: 68  ----TGELITPHLVKTKFGWHVIKI 88


>gi|261880044|ref|ZP_06006471.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333284|gb|EFA44070.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 474

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 51/155 (32%), Gaps = 21/155 (13%)

Query: 250 NDELQAEYEKNKEKYFSPEI-RTVEQLVFPNQKEA------------DEAFQSLKKGKKF 296
             E +  Y + +++         V  ++   +++A            D  +++LKKG  F
Sbjct: 108 EAEARKIYRQTQQQVDQNGGMVHVAHILVMMKQQATPDENRKAKVRIDSVYEALKKGADF 167

Query: 297 IQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             LA++  +     + G       K         D  +SL K G+ +       G+ I  
Sbjct: 168 AALAKQVSQDPGSANNGGELPMIVKGQTLK-EFEDVAWSL-KDGEMSEPFMSPAGWHIVL 225

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
               +     S+   +  I   +      E++   
Sbjct: 226 KKGHQ--NFYSYDSQRDAIMKYIDQRGLREQIINA 258


>gi|325132900|gb|EGC55577.1| hypothetical protein NMBM6190_0280 [Neisseria meningitidis M6190]
          Length = 288

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 80/253 (31%), Gaps = 19/253 (7%)

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
             +    ++      +    +     + ++  + KR   +          +         
Sbjct: 41  AAFRAENSRAEDTPQLRQSLLENEVVNTVVAQEVKRLKLDR---------SAEFKNALAK 91

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVH---EKEKKIEISNDELQAEYEKNKEKYF 265
             A   +  +  K +++      + Y L          K   +S  E++A Y+     Y 
Sbjct: 92  LRAEAKKSGDDKKPSFKTVWQ-AVKYGLNGEAYALHIAKTQPVSEQEVKAAYDNISGFYK 150

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG----KSLSDISLGSFSKEYIP 321
             +   + +++   ++ A +A   L+  K F  + ++         +   +G    + + 
Sbjct: 151 GTQEVQLGEILTDKEENAKKAVADLRAKKGFDAVLKQYSLNDRTKQTGAPVGYVPLKDLE 210

Query: 322 D--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
                L  +I  L K       +     Y + +V++ +     SF E+K  IA  ++  +
Sbjct: 211 QGVPPLYQAIKDLKKGEFTATPLKNGDFYGVYYVNDSREVKVPSFDEMKGQIAGNLQAER 270

Query: 380 ASEKVKEDYKRLE 392
               V     +  
Sbjct: 271 IDRAVGALLGKAN 283


>gi|195152313|ref|XP_002017081.1| GL21710 [Drosophila persimilis]
 gi|194112138|gb|EDW34181.1| GL21710 [Drosophila persimilis]
          Length = 130

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G+KF ++A    +  +     LG   +  +      D+
Sbjct: 38  KVRHILCEKQGKIMEAMEKLKAGQKFPEVATAYSEDKARQGGDLGWQIRGAMVGP-FQDA 96

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L            P +   FGY I  V   K
Sbjct: 97  AFALPISNVNNPVYTDPPVKTKFGYHIIMVEGKK 130


>gi|320540196|ref|ZP_08039851.1| putative peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Serratia symbiotica str. Tucson]
 gi|320029862|gb|EFW11886.1| putative peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Serratia symbiotica str. Tucson]
          Length = 131

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 11/86 (12%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  N+K  +     LK+G  F  LA +     S     SLG F K  +   +   ++F
Sbjct: 33  HILVDNEKLTNVLLVELKRGVSFDTLARKYSGCPSKRHGGSLGEFIKGSMV-AAFDKAVF 91

Query: 331 S---LAKKGDFTPVIHGSFGYVIAHV 353
           S   L   G         FGY I  V
Sbjct: 92  SIPLLKPHGSV----KTQFGYHIIKV 113


>gi|255645973|gb|ACU23475.1| unknown [Glycine max]
          Length = 146

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA++ L+ G           +F ++A+E  +  S      LG F +
Sbjct: 48  KARHILCEKQGKINEAYKKLQDGWLCNGDKVPPAEFAKIAQEYSECPSGKKGGDLGWFPR 107

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      D  F+    G  +     + GY I      K
Sbjct: 108 GKMAGP-FQDVAFN-TPVGATSAPFKSTHGYHIILSEGRK 145


>gi|119471814|ref|ZP_01614147.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Alteromonadales
           bacterium TW-7]
 gi|119445304|gb|EAW26593.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Alteromonadales
           bacterium TW-7]
          Length = 93

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
              ++  ++ +  +    +++G+ F +LA+            +LG F    +        
Sbjct: 6   ARHILVDSEAQCLDLKTKIEQGEDFAELAKVHSNCPSGQDGGALGEFGPGMMV-PEFDKV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +FS          +   FGY +  V++   
Sbjct: 65  VFSAPIN-QVQGPVQTQFGYHLLEVTSRSE 93


>gi|160896561|ref|YP_001562143.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
 gi|160362145|gb|ABX33758.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
          Length = 300

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 17/145 (11%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ---------KEADEAFQSLK----KGKKF 296
            D  +  ++ N  ++   E   +  ++F            + A+     L+     G +F
Sbjct: 124 EDACRRHFDANPARFAQGERVRLRHVLFAVTPGVDVRALTQRAEALLIELRCADDAGLRF 183

Query: 297 IQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            + A +     S      LG   +        A  +F+  + G    ++H  FG  +  V
Sbjct: 184 AEAARQWSNCPSGQHGGELGWLGRSDCA-PEFARDVFASQEIGVLPRLVHSRFGLHVVEV 242

Query: 354 SNIKPSFTVSFQEVKKDIANQMRIT 378
              +      +Q+ +  +A  +   
Sbjct: 243 CAREAGVLPDWQQARPAVAQALHQQ 267


>gi|237742313|ref|ZP_04572794.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 4_1_13]
 gi|229429961|gb|EEO40173.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 4_1_13]
          Length = 356

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 124/360 (34%), Gaps = 49/360 (13%)

Query: 144 EGINEKEYIDHYTKMLSRT--DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
           + I++++      +++SR    V      G++ +   LD   +F       DY V     
Sbjct: 42  QKISKEDAEKQAKELISRQIKMVKIAKEKGVKVNE-NLDTISQFQ------DYYVGLAEK 94

Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
           V     P++  L ++F + K  Y  P       +   V   ++   ++ ++ +    +  
Sbjct: 95  VRDEVKPTDEDLLKFFNENKSKYSIPATADAKLVFISVKSAKEDDNLAKEKAEKLLSELT 154

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
            + F+                        +KGK          + +    LG+F    + 
Sbjct: 155 PENFT------------------------EKGKSLS-----NNQDIIYQDLGTFGTTAMV 185

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                +++  +        VI   FGY +A+V     +   + + +   +       K  
Sbjct: 186 K-EFEEALKDVPSNTVVNKVIKTKFGYHVAYVKKNDNNRQWAVEHI---LIVPYPSEKTM 241

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
            +  E   +++  +  GT    ++  +KI    +   D  G    G     I Y  ++  
Sbjct: 242 TEKLEKLNKVKADIEAGT----LTLNDKIDEDVIQSFDAKGITPDGIIPNFI-YDPEIAK 296

Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
            VFG +  L+K   +     + +  Q  + + A D    +    VK D+   K AE +S 
Sbjct: 297 AVFGTE--LNKVGIINPNKATIVVFQKTKEVKAEDANFNKSKEQVKSDYINNKVAEYMSK 354


>gi|17229105|ref|NP_485653.1| hypothetical protein alr1613 [Nostoc sp. PCC 7120]
 gi|17135433|dbj|BAB77979.1| alr1613 [Nostoc sp. PCC 7120]
          Length = 252

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 81/246 (32%), Gaps = 27/246 (10%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-------- 210
           +S    V       +    + D  +++  E        +            +        
Sbjct: 14  ISIEQTVKYLQSSGKLGQFISDVLRQYVIEQEIQGRDDVEINPALTEQTVIDFRLKNQLA 73

Query: 211 --AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
                  W      +Y     +  + I F+   ++ K  ++  +L   + + K      +
Sbjct: 74  DPQAFQDWLTNNGTDYA----RFHASITFNFKLEKLKTLVTEAKLPEYFIEQKIFL---D 126

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSL 325
              + ++V  +++ A+E    + +G  F QLA+E       L +  +G  S+  +PD   
Sbjct: 127 RVVISRIVVDSRELAEELQLQIAEGGSFEQLAKEYSILDDRLVNGMMGPISRGTMPDKL- 185

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
             +   +A  G     I     Y +  V    P+   S  ++   +   ++     + + 
Sbjct: 186 -RAAIDVATPGQLVGPIEIDGRYGLFRVEQFLPA---SLDDI--QLKQALQNELFEKWLA 239

Query: 386 EDYKRL 391
           E  ++L
Sbjct: 240 EKIQKL 245


>gi|212636856|ref|YP_002313381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
 gi|212558340|gb|ACJ30794.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
          Length = 92

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIF 330
            ++  +++ A++  + L KG KF  LA++     S      LG F K  +   +     F
Sbjct: 9   HILVKHKELAEDIIKQLNKGAKFDVLAKKHSSCPSGKKGGHLGEFKKGAMV-PAFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
                G+          FG+ +  V
Sbjct: 68  ----TGELLTPHLVKTKFGWHVIKV 88


>gi|86159490|ref|YP_466275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776001|gb|ABC82838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 587

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 6/166 (3%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            + +  F        + I + +L+A Y+ +++++ +  +  ++QL FP+ K A  A + L
Sbjct: 408 SLVFGTFVQRVLVPDVSIKDADLRAYYDGHRDEFTAAPLYRLDQLAFPDMKGAQRAAERL 467

Query: 291 KKGKKFIQLAEEQGKSLSDISLG-SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF--- 346
            +G  F  L       L+       F  + +    L + +                    
Sbjct: 468 ARGTDFKWLKANAEGQLAPAQRALDFEGQLLSAKGLPEDLAGALASAQVGDYRMHQGPRG 527

Query: 347 -GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            GYV+  V +        ++E +KDI  ++     +  V +   +L
Sbjct: 528 QGYVVL-VVSRTDPQVQPYEEARKDIQKKLFGQALNRAVTDWAAKL 572



 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 69/435 (15%), Positives = 135/435 (31%), Gaps = 66/435 (15%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K ++    E++  Y+++  ++       V  L+F  +++A     +L  GK F++L
Sbjct: 154 QQVTKDVKPDALEVERVYKESVRRW------KVRSLLFQKEEDAAAVKPALAGGKSFVEL 207

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK--KGDFTPVIHGSFGYVIAHVSN-I 356
           A++   +          +   PD  L     +L    KG+ T  +    G+ I +V + +
Sbjct: 208 AKQL-VAEKKADGSGEPEVLPPDQILPAVAAALQPLHKGEVTAPLKLQNGFAILYVEDLV 266

Query: 357 KPSFTVSFQEVKKDIANQMRIT---KASEKVKEDYKRLEEFLALGTSMDEISRREK-IVS 412
            P       E +    ++          +++   Y +++E L      D        +V 
Sbjct: 267 YPDDPAKRAEAEAASIDRQGGQILIAFRKELDRKYVKIDEALLRKIDFDAPKPGFAVLVK 326

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
              P+   AG+        A    E+    V         D          ++ ++    
Sbjct: 327 DKRPIARIAGEAPITVSDLANAVGEKFFHGVEKPQQEKRVDKLKRPRLDGLIYKRVFT-K 385

Query: 473 PARDRKLEEVLTDVKKDWKTV--------------------------------------- 493
            AR RKL++    ++                                             
Sbjct: 386 EARVRKLDQSEEYLRAVADQENSLVFGTFVQRVLVPDVSIKDADLRAYYDGHRDEFTAAP 445

Query: 494 --KTAEEV--SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN---QINRMDNENKFFGY 546
             +  +      K  Q   E    G +F+ +  N    L                K    
Sbjct: 446 LYRLDQLAFPDMKGAQRAAERLARGTDFKWLKANAEGQLAPAQRALDFEGQLLSAKGLPE 505

Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKV--TNSKVGPVQE--KDKFISYLTQMMNKDL 602
           D    + S  V   +      G  YVV  V  T+ +V P +E  KD       Q +N+ +
Sbjct: 506 DLAGALASAQVGDYRMHQGPRGQGYVVLVVSRTDPQVQPYEEARKDIQKKLFGQALNRAV 565

Query: 603 LDSVIAYLKSQYSVT 617
            D   A L++ + + 
Sbjct: 566 TD-WAAKLRAAHDIE 579


>gi|75910422|ref|YP_324718.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anabaena variabilis
           ATCC 29413]
 gi|75704147|gb|ABA23823.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anabaena variabilis
           ATCC 29413]
          Length = 252

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 81/246 (32%), Gaps = 27/246 (10%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-------- 210
           +S    V       +    + D  +++  E        +            +        
Sbjct: 14  ISIEQTVKYLQSSGKLGQFISDVLRQYVIEQEIQGRDDVEINPALTEQTVIDFRLKNQLA 73

Query: 211 --AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
                  W      +Y     +  + I F+   ++ K  ++  +L   + + K      +
Sbjct: 74  DPQAFQDWLTNNGTDYA----RFHASITFNFKLEKLKTLVTEAKLPEYFIEQKIFL---D 126

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSL 325
              + ++V  +++ A+E    + +G  F QLA+E       L +  +G  S+  +PD   
Sbjct: 127 RVVISRIVVDSRELAEELQLQIAEGGSFEQLAKEYSVLDDRLVNGMMGPISRGTMPDKL- 185

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
             +   +A  G     I     Y +  V    P+   S  ++   +   ++     + + 
Sbjct: 186 -RAAIDVATPGQLVGPIEIDGRYGLFRVEQFLPA---SLDDI--QLKQALQNELFEKWLA 239

Query: 386 EDYKRL 391
           E  ++L
Sbjct: 240 EKIQKL 245


>gi|331006788|ref|ZP_08330054.1| peptidyl-prolyl cis-trans isomerase C [gamma proteobacterium
           IMCC1989]
 gi|330419406|gb|EGG93806.1| peptidyl-prolyl cis-trans isomerase C [gamma proteobacterium
           IMCC1989]
          Length = 91

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
              ++  N++ A++  Q L KG+ F  LA++      +     LG   K  +   S+   
Sbjct: 5   ARHILVKNKEAAEKLKQRLSKGEAFDVLAKKHSTCNSAKKGGDLGEIRKGQLVK-SVEQV 63

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHV 353
           IF    K      +   FG+ +  V
Sbjct: 64  IFKKPLK-QVHGPVKSQFGFHLIEV 87


>gi|170736766|ref|YP_001778026.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
 gi|254249421|ref|ZP_04942741.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
 gi|124875922|gb|EAY65912.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
 gi|169818954|gb|ACA93536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
          Length = 276

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 74/237 (31%), Gaps = 13/237 (5%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
             V G   +   +D   R   +  S          +        A     +    +   A
Sbjct: 33  ATVNGTPITQADVDTLLRASGQPDSPQIRQAIKNQLITRVLVQQAAEKANYADKPEVKAA 92

Query: 227 PEYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
            +  +++  +   + +  K   +++++++A Y++        E +    +V  +   A  
Sbjct: 93  MQQAKVTAEVQLYLRDHVKPEPVTDEQVKARYDELVAALGKNEYKP-RVIVVKDPVAAAT 151

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLADSIFSLAK 334
               LK GK F  LA +   + S  + G              K     + +A ++  L  
Sbjct: 152 VLSELKAGKSFDGLARQYSLAPSRDTGGELPWVSFNTPAAEGKTARLPLPVAQALEKLTV 211

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                  I       I  +   +P+    F+  K  +  Q++   A +   +    L
Sbjct: 212 GATTKDSIPVDGVRAIVKLDAKRPTQVPGFETAKPTLQQQLQAIAAEKASAQMIGNL 268



 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 15/96 (15%)

Query: 26  LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
            + G          + TV +V    +  +      +               S +  S  +
Sbjct: 15  ALAGALSGPVHAQTAETVATVNGTPITQADVDTLLR--------------ASGQPDSPQI 60

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            + I + L++   + Q  E     AD   V   + +
Sbjct: 61  RQAIKNQLITRVLVQQAAEKANY-ADKPEVKAAMQQ 95


>gi|332706783|ref|ZP_08426844.1| hypothetical protein LYNGBM3L_23620 [Lyngbya majuscula 3L]
 gi|332354667|gb|EGJ34146.1| hypothetical protein LYNGBM3L_23620 [Lyngbya majuscula 3L]
          Length = 318

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 81/228 (35%), Gaps = 31/228 (13%)

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
                   R V  +      V A+ +PS+ VL  +  ++ D Y  P     + I F    
Sbjct: 118 QNDLIVRRRVVQKMQFLVEDVSALREPSDQVLQAYLGEHADRYTIPGKFSFAQIYFSREM 177

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
           +  +   ++ E +                        NQ +A+   +  +K      L  
Sbjct: 178 RRDR---TDAEARD---------------------LLNQLQANPNLERFQKLGDRSMLPI 213

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
               + ++I   +F        S    +  + + G      H ++G  + +VS+I+P   
Sbjct: 214 TYNLASAEILSNTFGG------SFGQEMAGVTENGW-QGPFHSAYGSHLVYVSDIEPGHN 266

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
            +  EVK+D+       +  +  ++ Y++L +   +    D +++  +
Sbjct: 267 ATLAEVKRDVRRDWMRDQRQQLDEQFYQQLRDRYTVSIDQDALNQAIQ 314


>gi|195354844|ref|XP_002043906.1| GM17827 [Drosophila sechellia]
 gi|194129144|gb|EDW51187.1| GM17827 [Drosophila sechellia]
          Length = 126

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G+KF ++A    +  +     LG   +  +      D+
Sbjct: 34  KVRHILCEKQGKITEAMEKLKAGQKFPEVAAAYSEDKARQGGDLGWQIRGAMVGP-FQDA 92

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L            P I   FGY I  V   K
Sbjct: 93  AFALPISTVNNPVYTDPPIKTKFGYHIIMVEGKK 126


>gi|149916817|ref|ZP_01905319.1| hypothetical protein PPSIR1_05633 [Plesiocystis pacifica SIR-1]
 gi|149822534|gb|EDM81923.1| hypothetical protein PPSIR1_05633 [Plesiocystis pacifica SIR-1]
          Length = 323

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 99/273 (36%), Gaps = 26/273 (9%)

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           F  ++       +   E + +    +      +  + +  +    L+L QA+ F      
Sbjct: 54  FDEEIAFELQKLQNPTEDQLMRRLAE------LEPLALDNLIGRKLMLSQAQTFQVGATE 107

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK---RISYILFDVHEKEKKIEI 248
            +  V   +   +    S A L    E+       PEY+   R   IL+ +  +   I +
Sbjct: 108 QEVEVYLQQLARSAQLSSVAELRTAVEQSGRYGTWPEYRNKLREDIILYKLQGQLLNIAV 167

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------ADEAFQSLKKGKKFIQ 298
           S+ ++   Y   +          V +LVF   ++          A    + L  G+ F  
Sbjct: 168 SDAQVLERY--RELSKGEESRLAVRRLVFRAGEDSSERDAVFKRAKTVVRRLSGGEDFEA 225

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +A E G++         ++  +    + + +F  AK GD    +    GYV+  V  +  
Sbjct: 226 VAAELGQAAESEE---VTRSGV-SRPIGERLFK-AKAGDVVGPLSSGQGYVVFLVEEVIA 280

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           S  + F+E K  +   +      + +KE Y++L
Sbjct: 281 SDLLGFEEAKDRLRRLLEEEARQKALKELYEQL 313



 Score = 40.4 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 11/131 (8%)

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
              +  +   K  + V+     G++F  +   LG     + ++ R              +
Sbjct: 198 EDSSERDAVFKRAKTVVRRLSGGEDFEAVAAELG-QAAESEEVTR-----SGVSRPIGER 251

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVI 607
           +F      V   P+ +G  YVVF V            + KD+    L +   +  L  + 
Sbjct: 252 LFKAKAGDV-VGPLSSGQGYVVFLVEEVIASDLLGFEEAKDRLRRLLEEEARQKALKELY 310

Query: 608 AYLKSQYSVTV 618
             L+++  V +
Sbjct: 311 EQLRARAHVDI 321


>gi|317504768|ref|ZP_07962727.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315664099|gb|EFV03807.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 470

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 58/149 (38%), Gaps = 8/149 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSL 325
            R  +Q     ++  D  + +L+ G  F ++A     + +  +LG      +P       
Sbjct: 136 QRASKQTEIEVKQRIDSIYNALQHGADFGEMARRYSDNKTATNLGEHQPWLLPGQTLPEF 195

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
               ++L KKG+ +       GY I  + +    F   +  V+ D+   +       K+ 
Sbjct: 196 ETQAYAL-KKGEMSTPFLTPAGYHIILIEDKSAYF--PYDSVRNDLLRFVSQRNLRNKLT 252

Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSID 414
               RL+E      S ++++ +++   ++
Sbjct: 253 AA--RLQERSFAQRSSEDMALKKQAKDLE 279


>gi|15604516|ref|NP_221034.1| hypothetical protein RP673 [Rickettsia prowazekii str. Madrid E]
 gi|6226388|sp|O05951|Y673_RICPR RecName: Full=Uncharacterized protein RP673; Flags: Precursor
 gi|2073481|emb|CAA72481.1| hypothetical protein [Rickettsia prowazekii]
 gi|3861210|emb|CAA15110.1| unknown [Rickettsia prowazekii]
 gi|292572304|gb|ADE30219.1| hypothetical protein rpr22_CDS651 [Rickettsia prowazekii Rp22]
          Length = 295

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 71/179 (39%), Gaps = 16/179 (8%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           L+++   F  + ++ A      +S V SV  + +  + F  + K+ +  ++       + 
Sbjct: 4   LLLIITVFFTFNVAQASL----TSIVASVNDKPITLNEFH-ARKKMIMALNNIENLTADQ 58

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
           ++     L+   +++L+  + L Q+  D   E     +   I          NK +H   
Sbjct: 59  DK----QLNDLAINSLIDESLLFQYAGDR--EIPQDEIDNAIKSIE----DRNKMAHGSL 108

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           +  L  + +N + +I      L + +++      ++ SN  +D       + + V+ ++
Sbjct: 109 LQYLKNKSVNPESFILQIKSELIKMNILSSLSRSVQVSNKEID-VAILSSDQKDVEILM 166


>gi|116495723|ref|YP_807457.1| peptidylprolyl isomerase [Lactobacillus casei ATCC 334]
 gi|116105873|gb|ABJ71015.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus casei ATCC
           334]
          Length = 299

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 26/187 (13%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             S   +   ++ YK  Y              R+   + +          +K  ++S  +
Sbjct: 76  SVSTKTVNDAYDSYKQQYGENFDAFLSQNGFSRSSFKESLRTNFLSEVALKKLKKVSESQ 135

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+A ++  + K       TV+ ++  ++  A +    L  G+ F  LA+      +    
Sbjct: 136 LKAAWKTYQPK------VTVQHILTSDEDTAKQVISDLAAGQDFATLAKTDSIDTATKDN 189

Query: 313 G----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
           G      S     D +  D+ + L         +  + GY +  +  I      +F   K
Sbjct: 190 GGKISFESNNKTLDATFKDAAYKLKNGDYTQTPVKVTDGYEVIKM--INHPAKGTFTSSK 247

Query: 369 KDIANQM 375
           K +   +
Sbjct: 248 KALTASV 254


>gi|313124214|ref|YP_004034473.1| parvulin-like peptidyl-prolyl isomerase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280777|gb|ADQ61496.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 311

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 17/190 (8%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
             S+  +   + KYK  Y +     +SY        ++ +  +N    A  +  K+   +
Sbjct: 74  KVSSKKINAEYNKYKKQYSSNFSTVLSYSGLTTKSFKQNLA-TNLYSVAALKDLKKPTTT 132

Query: 267 PEIR---------TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL----- 312
            E           TV+ +V   +  A+   + LK G  F  LA++     +         
Sbjct: 133 QEKNWWKSYHTKTTVQHIVVDKKSTAETVIKKLKSGTSFATLAKKYSTDTATKKKAGKMA 192

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              S +     +   +++ L +    T  +  S GY +  V         S+ + K  I 
Sbjct: 193 AFDSTDTNLSSTFKSAVWKLKEGEYTTTPVKTSSGYEVIKVLKTTEKG--SYTKNKSFID 250

Query: 373 NQMRITKASE 382
            Q+    A++
Sbjct: 251 KQLYAKWAAD 260


>gi|86133091|ref|ZP_01051673.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
 gi|85819954|gb|EAQ41101.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
          Length = 459

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/389 (13%), Positives = 126/389 (32%), Gaps = 69/389 (17%)

Query: 154 HYTKMLSRTDVVG--MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
              + L +  ++     +  +  S+  +         +R    +        ++    + 
Sbjct: 71  EMLEELMQQKLLAHHAVIDSVTVSDEEIS--------SRVERSVAFFTEQFGSV----DK 118

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVH---EKEKKIEISNDELQAEYEKNKEKYFSPE 268
           V+  +     D+ +   Y   S  +       +   KI+++ +E++  Y   KE    PE
Sbjct: 119 VIKAYGFNDLDDLKKELYSVQSENVLIEKEQLKITDKIDVTPEEVRLYYVGLKEDGELPE 178

Query: 269 ---IRTVEQLVFPNQKEADE----------AFQSLKKGKKFIQLAEEQGKSLSDISLGS- 314
                 + QLV   +   +E            + ++ G  F   A          + G  
Sbjct: 179 FSAEIELAQLVIKAKPTEEENQRIINKLNELKKEIEDGANFKMKAIINSDDPGVTNNGGR 238

Query: 315 --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK------------PSF 360
              +KE        +  FSL   G  +      FGY +  +  IK            P+ 
Sbjct: 239 YEVTKESQFIKEFKEMAFSL-DVGQVSKPFKSDFGYHLMQLHEIKGNMRIASHILMQPNV 297

Query: 361 TVSF----QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
             S     +E    IAN +++ K +    E  ++  +        DE ++ +  + ++ P
Sbjct: 298 PESLLTETKEKAIKIANDIKLGKIT--FTEAVRKYSD--------DEDTKNDDGLLMN-P 346

Query: 417 LVDFAGKDVKGKEVAAIPYKEQL----LFRVFGKDDPLSKD--HTVALPD--GSYMWVQI 468
                  D+   + A      +L    L  V+  ++   +     + + D   ++    +
Sbjct: 347 YTGENTWDLTRMDPALYARVAELQKGELSDVYFDENRSGEKMYKFIIMRDRTNTHTADLV 406

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAE 497
            + +  ++  L +   +    W   K ++
Sbjct: 407 NDYVKVQELALAKKKEEAITKWAKEKISD 435


>gi|73984320|ref|XP_849005.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase
           NIMA-interacting 4 (Rotamase Pin4) (PPIase Pin4)
           (Parvulin 14) (Par14) (Peptidyl-prolyl cis/trans
           isomerase EPVH) (hPar14) [Canis familiaris]
          Length = 131

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +       +
Sbjct: 39  KVRHILCEKHGKIMEAMEKLKSGMRFNEVATQYSEDKARQGGDLGWMTRGSMVGP-FQAA 97

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P I   FGY I  V   K
Sbjct: 98  AFALPVSGPDKPVFTDPPIRTEFGYRIIMVEGRK 131


>gi|229590093|ref|YP_002872212.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Pseudomonas
           fluorescens SBW25]
 gi|312961365|ref|ZP_07775870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens WH6]
 gi|229361959|emb|CAY48859.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Pseudomonas
           fluorescens SBW25]
 gi|311285023|gb|EFQ63599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens WH6]
          Length = 91

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++    +EA++  Q + KG+ F  LA++     S      LG      +      D
Sbjct: 4   QARHILVKTSEEAEQLKQRIAKGEAFDVLAKKYSTCPSGKRGGDLGEVRPGQMVGAI--D 61

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHV 353
           ++            I   FGY +  V
Sbjct: 62  AVIFKKPVKVVHGPIKSKFGYHLVQV 87


>gi|255547349|ref|XP_002514732.1| rotamase, putative [Ricinus communis]
 gi|223546336|gb|EEF47838.1| rotamase, putative [Ricinus communis]
          Length = 145

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA++ L+ G           +F +LA E  +  S      LG F +
Sbjct: 47  KARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKLAAEYSECPSGKKGGDLGWFPR 106

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      +  F+    G  +     + GY I      K
Sbjct: 107 GKMAGP-FQEVAFN-TVVGATSAPFKSTHGYHIILCEGRK 144


>gi|237740460|ref|ZP_04570941.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 2_1_31]
 gi|229422477|gb|EEO37524.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 2_1_31]
          Length = 219

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 76/173 (43%), Gaps = 8/173 (4%)

Query: 228 EYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           E   I Y L  +  +  +  +I ++ L+  Y++NKE Y  PE   ++ +    Q +A++ 
Sbjct: 37  ETLFIRYFLEREAAKVVEGTKIEDEVLKKIYDENKEFYTFPEKVKLDTIFIREQDKAEKL 96

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIFSLAKKGDFTP-V 341
            + +     F ++ +E+    +D++  +    +I       ++A+ IF+  KK      +
Sbjct: 97  LKEVTV-ANFNEI-KEKNDEKTDVTQKNVDDNFIFITDIHPAIAEEIFNENKKDVILANL 154

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           +    G+ I ++ + +     +F+E K+ I N ++     +   +    +   
Sbjct: 155 VPVQEGFHIVYLKDKEDKRQATFEEAKETILNDVKRNLFGQAYNQLIADIANE 207


>gi|319948816|ref|ZP_08022932.1| SurA domain-containing protein [Dietzia cinnamea P4]
 gi|319437523|gb|EFV92527.1| SurA domain-containing protein [Dietzia cinnamea P4]
          Length = 246

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 55/153 (35%), Gaps = 6/153 (3%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
             V  V   ++    F++ ++ +   +S +    ++ +      L +   D L+    L 
Sbjct: 50  DPVAEVNGTEISRDEFLSVFENQYQQMSMQ--AQMSGQPVDEAQLKELTTDGLIGTELLT 107

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q     G+E     +  E+        + N+ S D FV  +  +G++    +D   K L 
Sbjct: 108 QEAGTRGIEVSDEEIQAEL----AVFAERNQVSTDEFVEAMGGQGLDRAAVLDQIDKQLR 163

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
              ++    G    +   +  A     + +++ 
Sbjct: 164 VQKLITDEYGEFEVTEAEVQAAYEQVAQQQAMS 196


>gi|303242616|ref|ZP_07329091.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
 gi|302589824|gb|EFL59597.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
          Length = 471

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 88/250 (35%), Gaps = 31/250 (12%)

Query: 128 KDNKF-SHDVFVSRLAREGINEKEYIDHYT--KMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
              +F    +F    ++  +   +  D     +      ++   +     +N L++++ +
Sbjct: 59  VGGEFVDKKLFQDEKSQIYLKVDKQADLMQASQEEIDDRILSAVIDDAVVNNFLINKSGK 118

Query: 185 FYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
              E    +YI +       N+         S+             +       +   + 
Sbjct: 119 QVTEAEIDEYIKVYIKSKYDNDEDFKVFLTTSDYESEDELRDVAKLFL------LKLKVM 172

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--------ADEAFQS 289
                E  I +++ EL  EYE  K         T   +   N+K+        A+  ++ 
Sbjct: 173 PDIAAEYGITVTDKELNEEYESFKAANT---EYTFRHIYISNEKKSDQEALNLANNIYKQ 229

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD---SIFSLAKKGDFTPVIHGSF 346
           L +G  F +LA++        + G  + EY+P  S+ +   + +S AK G+    +    
Sbjct: 230 LSEGADFKELAKKYSDDQDTKNNGGLN-EYVPFSSINEELKAAYSNAKVGELIAPVKMKS 288

Query: 347 GYVIAHVSNI 356
           GY IA + +I
Sbjct: 289 GYNIALIEHI 298


>gi|255942625|ref|XP_002562081.1| Pc18g02370 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586814|emb|CAP94461.1| Pc18g02370 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 129

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF ++A E  +  +    SLG  +K  + D +  +  
Sbjct: 40  VRHILCEKHAKKEEALEKLRNGTKFDEVAREFSEDKARQGGSLGWKTKGGL-DPAFENVA 98

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           F L +              +FGY I  V   K
Sbjct: 99  FEL-ETSTTGNPKYAEVKTAFGYHIIMVEGRK 129


>gi|312884158|ref|ZP_07743870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309368206|gb|EFP95746.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 92

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  ++++A++  + LKKG KF  LA+      S      LG F +  +         F
Sbjct: 9   HILVKHKEQAEDIIKQLKKGAKFQTLAKRHSTCPSGKRGGDLGEFKRGQMV-AQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GETLVPHLVKTKFGWHVVKV 88


>gi|290474826|ref|YP_003467706.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Xenorhabdus
           bovienii SS-2004]
 gi|289174139|emb|CBJ80926.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Xenorhabdus
           bovienii SS-2004]
          Length = 416

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/375 (13%), Positives = 106/375 (28%), Gaps = 71/375 (18%)

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
               L  +IL+ L+    + Q  + + +      +   IA         N    D     
Sbjct: 44  DEKALRHQILERLIMDDIILQMAKQMQITIPDQVLDSTIANIAA----QNHMGLDELKKN 99

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRF------YFENRSVD 193
           L  EG+N   Y +   K +   +V        +      ++   +            +V 
Sbjct: 100 LTAEGLNFNTYRNQIRKEMIIAEVRNNEIRRRVTILPQEVEALAKNLSSENNQNTELNVS 159

Query: 194 YIVLNNRHVPAIADPSNAV------LTQWFEKYKDNYRAPEYKRISYILFDVHEK----- 242
            I++  R  P+ A    A       L++   K   ++       I+Y       K     
Sbjct: 160 NILIPLRENPSQAQVEKATAIINKILSEL--KNGADFG---KLAITYSGDTQALKGGNMG 214

Query: 243 -EKKIEISNDELQAEYEKNKEKYFSPEI-------------------------RTVEQLV 276
             K  E+ +   +     +K +   P                                ++
Sbjct: 215 WRKLQELPSLFAEQLQSAHKGQIIGPIRSGVGFHILKINDIRGSNMPQVAATEVNARHIL 274

Query: 277 FPN-----QKEADEAFQSLKKG-----KKFIQLAEEQGKSLSDISLGSFSKEYIP---DV 323
                     +A      L++        F   AE+  +       G      +P     
Sbjct: 275 LKTSPIMTDDQARSTLMKLREEILSGKTTFNAAAEKYSEDPGTAMRGGELGWNVPSTYAP 334

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           +  D++  L KKG+ +  +H +FG+ +  + + +               N  R+    + 
Sbjct: 335 AFRDALVKL-KKGELSQPVHSTFGWHLIQLIDTRKVDRTD----SAQKDNAYRLLLNRKL 389

Query: 384 VKEDYKRLEEFLALG 398
            +E    +++  A  
Sbjct: 390 GEETQNWMQDLRASA 404



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 76/242 (31%), Gaps = 22/242 (9%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
             + YR    K +       +E  +++ I   E++A  +    +        V  ++ P 
Sbjct: 106 NFNTYRNQIRKEMIIAEVRNNEIRRRVTILPQEVEALAKNLSSENNQNTELNVSNILIPL 165

Query: 279 --NQKEAD---------EAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVS 324
             N  +A          +    LK G  F +LA         L   ++G    + +P + 
Sbjct: 166 RENPSQAQVEKATAIINKILSELKNGADFGKLAITYSGDTQALKGGNMGWRKLQELPSLF 225

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT---KAS 381
                   A KG     I    G+ I  +++I+ S        + +  + +  T      
Sbjct: 226 AEQ--LQSAHKGQIIGPIRSGVGFHILKINDIRGSNMPQVAATEVNARHILLKTSPIMTD 283

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
           ++ +    +L E +  G +    +      S D       G+          P     L 
Sbjct: 284 DQARSTLMKLREEILSGKTTFNAAAE--KYSEDPGTAMRGGELGWNVPSTYAPAFRDALV 341

Query: 442 RV 443
           ++
Sbjct: 342 KL 343


>gi|282901153|ref|ZP_06309084.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193985|gb|EFA68951.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 252

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 92/262 (35%), Gaps = 27/262 (10%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-------SVDYIVLN 198
           +    +     + +  + VV       R +  + D  +++  E          +   ++ 
Sbjct: 1   MESSSFFTINDEQIELSQVVNYLQVSGRLNQFINDVVRQYILEKEIKNRNDVDISTALIE 60

Query: 199 NR--HVPAIADPSN-AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
                       ++      W      +Y          + F    ++ K+ I+  ++  
Sbjct: 61  QAIIDFRLKNQLTDQEQFQNWLTNNGTDYGT----FYESVSFSFKLEKLKVVITEPKIPE 116

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISL 312
            + + K      +   + +++   ++ A+E    +++G  F QLA+E   +     +  +
Sbjct: 117 YFIERKIYL---DRVVLSRIMVSTRELAEELQTQIQEGGSFEQLAKEYSLADEKTFNGMM 173

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV--KKD 370
           G  S+  +PD  +  +    A  G+    I     + +  + NI      S + V  K+ 
Sbjct: 174 GPISRGSLPD--ILRASVDGANMGELIGPIEIEGTFNLFRLENIL---LSSLENVQLKQS 228

Query: 371 IANQMRITKASEKVKEDYKRLE 392
           + N++      EK++    +L+
Sbjct: 229 LQNELFEKWLGEKIQNVTVKLQ 250


>gi|224025969|ref|ZP_03644335.1| hypothetical protein BACCOPRO_02720 [Bacteroides coprophilus DSM
           18228]
 gi|224019205|gb|EEF77203.1| hypothetical protein BACCOPRO_02720 [Bacteroides coprophilus DSM
           18228]
          Length = 457

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 84/256 (32%), Gaps = 36/256 (14%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP----------SNAVLTQWFEKYKDNYR---AP 227
             ++ Y     +D + ++ + V    +           +   + +++ K     R     
Sbjct: 73  AIQKLYLHQAEIDSVTVSEQAVLQEVETYTAWLIEQIGTKEKMEEYYNKTSTQIREMLRE 132

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEK---NKEKYFSPEIRTVEQLVFPNQKEAD 284
             +    +     +    I+++  E++  + K   +   Y  P    V+ +    +   +
Sbjct: 133 NMRNKQIVQEMQRKIVGDIKLTPAEVRNYFSKLPADSIPYILP-QVEVQIITLEPKVTEE 191

Query: 285 EAF----------QSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSI 329
           E              + KG+  F  LA    E+ G +      G   +  +     A+ +
Sbjct: 192 EKERIKSELREFTDRINKGETTFSTLARMYSEDPGSARQGGEYGFMGRGQLV-PEFANVV 250

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           F+L      + V    FG+ IA +   +     S++ +   +  ++   +  E + +   
Sbjct: 251 FNLTDTKKISKVFETEFGFHIAQLIEKRGDRV-SYRHI--LLKPRIDQKEIDEALAKLDT 307

Query: 390 RLEEFLALGTSMDEIS 405
              +      + D+ +
Sbjct: 308 LANDIRKGKVNFDDAA 323


>gi|71065417|ref|YP_264144.1| peptidylprolyl isomerase [Psychrobacter arcticus 273-4]
 gi|71038402|gb|AAZ18710.1| peptidylprolyl isomerase [Psychrobacter arcticus 273-4]
          Length = 92

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 270 RTVE--QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324
           RT     ++  +++ AD+    LKKG +F  LA++     S     SLG F +  +    
Sbjct: 3   RTASALHILVKHKELADDIIAKLKKGAQFDVLAKKHSTCPSGKKGGSLGEFKQGQMVQP- 61

Query: 325 LADSIFSLAKKGDFTPVI--HGSFGYVIAHV 353
                FS    G+          FG+ +  V
Sbjct: 62  FDKVCFS----GELFTPHLVKTKFGWHVVKV 88


>gi|152955223|emb|CAM59672.1| parvulin-type peptidyl-prolyl cis/trans isomerase [Lotus japonicus]
          Length = 145

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA++ L+ G           +F ++A+E  +  S      LG F +
Sbjct: 47  KARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIAQEYSECPSGKKGGDLGWFPR 106

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      D  F+    G  +     + GY I      K
Sbjct: 107 GKMAGP-FQDVAFN-TVVGATSAPFKSTHGYHIILSEGRK 144


>gi|315125622|ref|YP_004067625.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas sp. SM9913]
 gi|315014135|gb|ADT67473.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas sp. SM9913]
          Length = 93

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
              ++  ++ +  +    +++G+ F +LA+            +LG F    +        
Sbjct: 6   ARHILVDSEAQCLDLKDKIEQGEDFAELAKLHSNCPSGQDGGALGEFGPGMMV-PEFDKV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +FS          +   FGY +  +++   
Sbjct: 65  VFSAPLN-QVQGPVQTQFGYHLLEITSRSE 93


>gi|113968969|ref|YP_732762.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
 gi|113883653|gb|ABI37705.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
          Length = 92

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  ++++A++  + L KG  F  LA+      S      LG F +  +       
Sbjct: 6   AAVHILVKHKEQAEDIIKQLNKGANFGALAKRYSSCPSAKKGGDLGEFKRGQMV-PQFDK 64

Query: 328 SIFSLAKKGD--FTPVIHGSFGYVIAHV 353
             FS    G+     ++   FG+ +  V
Sbjct: 65  VAFS----GELLVLHLVKTKFGWHVVKV 88


>gi|283780046|ref|YP_003370801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
           DSM 6068]
 gi|283438499|gb|ADB16941.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
           DSM 6068]
          Length = 724

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 18/166 (10%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK---FIQLA 300
            ++E++ ++LQ  YE N           V   V  +Q++A + ++  +       F +LA
Sbjct: 525 NRVEVTEEDLQKGYESNYGP-----RVEVLACVLTDQRQAQKVWEMARANPTNDFFAELA 579

Query: 301 EEQGKSLSDISLGSFS---KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +     S  S G      + Y    ++ +  F L K G+ + +I     Y+I       
Sbjct: 580 RQYSVEPSSRSNGGQVPPIRRYGGGAAIEEEAFKL-KAGELSGLIAVGDQYIILRCLGRT 638

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK------RLEEFLAL 397
                 F  VK ++   ++  K    +  ++       +++ FLA 
Sbjct: 639 SPVKADFATVKDELVADIQEKKLRILMNSEFDNTVASAQIDNFLAG 684



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 94/228 (41%), Gaps = 23/228 (10%)

Query: 224 YRAPEYKRISYILFDV--HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           +   EY+                KI+++ +EL+  +E      F P++R    +   +++
Sbjct: 224 FSEQEYRTTVVWQMIALRRLVADKIQVTPEELKMAFESE----FGPKVR-ARMIAVSSKE 278

Query: 282 EADEAFQSLK-KGKKFIQLAEEQGKSLSDIS-LGSFS--KEYIPDVSLADSIFSLAKKGD 337
           +AD+   +   K + F  LA++  +  +  S  G     + +  D +L    FSL K G+
Sbjct: 279 KADQVLAAAAAKPESFGDLAKQYCEDPAVASARGVIPPIRMHTGDPTLEQIAFSL-KPGE 337

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDYKRLEEF 394
            + VI  +  Y I       P   ++ Q +   ++ + +++R  K      + ++ + + 
Sbjct: 338 LSSVIKVANLYYILLCDEQVPRMVLAPQHIPAQQERLTDKLRENKLRVSAAQFFENMRKS 397

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
             +    ++ ++++ +  +           + G+ V+ +   E+ + R
Sbjct: 398 AQVVNVFEDPAKQKAMPGV--------AATINGRPVSMLQLSEECISR 437


>gi|255036260|ref|YP_003086881.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
           fermentans DSM 18053]
 gi|254949016|gb|ACT93716.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
           fermentans DSM 18053]
          Length = 774

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 56/151 (37%), Gaps = 12/151 (7%)

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLA 333
             +   DEA+  L+ G ++  + E+          G     F    +    + ++ F+L 
Sbjct: 270 SAKTRIDEAYAQLQAGDEWNLVVEKFSDDRESRKNGGLLPLFGTGQMV-PEIEEAAFALT 328

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED-YKRLE 392
           +   ++  +   +G+ I  +   +P    +F  +   +  ++      + +++    RL 
Sbjct: 329 RPQSYSKPVLTMYGWHIIRLIEKRP--IETFANMAPALRKKVVTDSRGKVIEQANATRLR 386

Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
           +  A    + E   + K+V+         GK
Sbjct: 387 KKYA----LQEAPEQWKLVAALADSTLRTGK 413



 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 112/318 (35%), Gaps = 38/318 (11%)

Query: 211 AVLTQWFEKYKDNYRAPEYK----RISYILFDVHEKEKKI---EISNDE-LQAEYEKNKE 262
             L ++   + +    PE++     I   +      E+++    +S+    ++ YE+NKE
Sbjct: 473 ESLMEYERDHLEE-TNPEFRSLMNEIREGVLLSQIMEEQVWQRSLSDSTGQRSFYERNKE 531

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
           +Y  PE      +   + +  +   +SL     K  + ++E    ++ + +G+   + + 
Sbjct: 532 RYNYPERALATIVTAKDTQTLNSVRKSLATSPYKLERKSKELLFPVNSVEIGNEQLDALT 591

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
           D+ +      + K  D+           +  ++  + +           + N ++   A 
Sbjct: 592 DLYII-----MQKNADY-----------VVEIAGYRSADEPEITS-STRVRNVVKYLNAR 634

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
                   R+ E      S  + +  E+   +       +  DV+    A  P    +  
Sbjct: 635 NI---PILRIIEKDYG--SFRQSAEPERNRRVAFQFFSQSKSDVEKVYNADAPGAVTIRE 689

Query: 442 RVFGKDDPL------SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
             F K DPL            A   G++ W+ + +  P R +   E    V  D++    
Sbjct: 690 GYFPKSDPLLAGFKWQTGEQTANASGTFTWLNVAKIDPPRAKTFSEARGTVINDYQKELE 749

Query: 496 AEEVSSKANQLVLEYSKE 513
            + ++    +  ++ + +
Sbjct: 750 KQWLARLQEKYPVKVNAQ 767


>gi|191639211|ref|YP_001988377.1| peptidylprolyl isomerase [Lactobacillus casei BL23]
 gi|190713513|emb|CAQ67519.1| Foldase protein prsA precursor (Protease maturation protein prtM)
           [Lactobacillus casei BL23]
 gi|327383289|gb|AEA54765.1| Peptidyl-prolyl cis-trans isomerase [Lactobacillus casei LC2W]
 gi|327386472|gb|AEA57946.1| Peptidyl-prolyl cis-trans isomerase [Lactobacillus casei BD-II]
          Length = 299

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 59/173 (34%), Gaps = 19/173 (10%)

Query: 214 TQWFEKYKDNYRAPE-------YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
            Q + +  D + +          + +          +K  ++S  +L+A ++  + K   
Sbjct: 90  KQQYGENFDAFLSQNGFSRSSFKESLRTNFLSEVALKKLKKVSESQLKAAWKTYQPK--- 146

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPD 322
               TV+ ++  ++  A +    L  GK F  LA+      +    G      S     D
Sbjct: 147 ---VTVQHILTSDEDTAKQVISDLAAGKDFATLAKTDSIDTATKDNGGKISFESNNKTLD 203

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            +  D+ + L         +  + GY +  +  I      +F   KK +   +
Sbjct: 204 ATFKDAAYKLKNGDYTQTPVKVTDGYEVIKM--INHPAKGTFTSSKKALTASV 254


>gi|113970791|ref|YP_734584.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
 gi|114048018|ref|YP_738568.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
 gi|117921059|ref|YP_870251.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
 gi|113885475|gb|ABI39527.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
 gi|113889460|gb|ABI43511.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
 gi|117613391|gb|ABK48845.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
          Length = 92

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
             T   L+  ++++     Q +  G  F Q+A       S      LGSF    +     
Sbjct: 3   QATARHLLVSSEEQCQALKQQILDGADFAQIARAHSSCPSGAQGGELGSFGPGMMV-REF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            + +FS          +   FGY +  V++ 
Sbjct: 62  DEVVFSAPLN-VVQGPVKTQFGYHLLEVTSR 91


>gi|294782456|ref|ZP_06747782.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 1_1_41FAA]
 gi|294481097|gb|EFG28872.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 1_1_41FAA]
          Length = 223

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 77/188 (40%), Gaps = 9/188 (4%)

Query: 228 EYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           E   I Y L  +  +  ++ +I ++ L+  Y++NKE Y  PE   ++ +    +++A+E 
Sbjct: 37  ETLFIRYFLEREAAKVVEETKIEDEVLKKIYDENKEFYTFPEKVKLDTIFVKEKEKAEEL 96

Query: 287 FQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            + +  G  F ++ E+  +    +  D+         I      + +    K      +I
Sbjct: 97  LKIVNVG-NFNEIKEKNDEKTDATQKDVDDNFIFITDIHPAIAEELLKENRKDVIIENLI 155

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF---LALGT 399
               G+ I ++ + + +   +F+E K+ I N ++     +   +    +      L    
Sbjct: 156 PVQEGFHIVYLKDKEDAKQATFEEAKETILNDVKRNLFGQVYNQIITDIANEKLTLETND 215

Query: 400 SMDEISRR 407
           + +E + +
Sbjct: 216 TKEEATEK 223


>gi|121956507|sp|Q7MP84|SURA_VIBVY RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 428

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 22/204 (10%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277
           + +R    K ++          ++I I   E+    E   ++  +     +  +      
Sbjct: 125 EEFREQIRKEMAASEARNALVRRRINILPAEVDNLAELLSKETNASVEYRIGHIQLRFTD 184

Query: 278 -----PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSI 329
                  + +A E  + LK+G  F  +A    K   +L     G   KE +P    AD I
Sbjct: 185 GQDKSALEAQAKELVEKLKQGADFSTMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI 243

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRITKASEKV 384
             +  KG          G+ I  + ++K   TV+  EV            +    A  ++
Sbjct: 244 -KMQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILLKPTVILSDEGAQREL 302

Query: 385 KEDYKRLEEFLALGTSMDEISRRE 408
            E  +R+    A   +  E++++ 
Sbjct: 303 NEFIRRI---RAGEATFGELAQQY 323



 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/405 (14%), Positives = 126/405 (31%), Gaps = 70/405 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    +  S    + K       +    + +++      L+++I+D L+     
Sbjct: 25  DKVAVIVNDGVILQSDIDTATKTLRANAKKSGQALPDADV-----LNEQIVDKLIIDTLQ 79

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG+  D  R+   I        ++N  + D   + +A EG++ +E+ +   K +
Sbjct: 80  TQEADRIGVRIDDTRLNQAIEEI----ARNNNQTIDELSAAIASEGVSYEEFREQIRKEM 135

Query: 160 SRTDVVGMFV-GGMRPSNLLLDQAKRFYFE--NRSVDYIV----------LNNRHVPAIA 206
           + ++     V   +      +D       +  N SV+Y +           +   + A A
Sbjct: 136 AASEARNALVRRRINILPAEVDNLAELLSKETNASVEYRIGHIQLRFTDGQDKSALEAQA 195

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRI----SYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                 L Q  +     Y   +  +      +      E      I  D+++    +NK 
Sbjct: 196 KELVEKLKQGADFSTMAYTYSKGPKALQGGDWGWMRKEEMP---TIFADQIKM---QNKG 249

Query: 263 KYFSPEI-----------------------RTVEQLVFP---------NQKEADEAFQSL 290
               P                              ++            Q+E +E  + +
Sbjct: 250 SIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILLKPTVILSDEGAQRELNEFIRRI 309

Query: 291 KKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSF 346
           + G+  F +LA++  +     +         PD         + +L   G  +       
Sbjct: 310 RAGEATFGELAQQYSQDPGSAAQDGELGYQTPDLYVPEFKHQVETLP-VGTISEPFKTVH 368

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G+ I  V + +     +   +K      +   K +E+V    + L
Sbjct: 369 GWHIVEVLDRRE-VDRTDSAMKNKAYRILFNRKFNEEVGAWMQEL 412


>gi|24373397|ref|NP_717440.1| peptidyl-prolyl cis-trans isomerase C [Shewanella oneidensis MR-1]
 gi|24347669|gb|AAN54884.1|AE015627_2 peptidyl-prolyl cis-trans isomerase C [Shewanella oneidensis MR-1]
          Length = 92

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
             T   L+  ++ +     Q +  G  F Q+A       S      LGSF    +     
Sbjct: 3   QATARHLLVSSEDQCQALKQQILDGADFAQIARAHSSCPSGAQGGELGSFGPGMMV-REF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            + +FS          +   FGY +  V++ 
Sbjct: 62  DEVVFSAPLN-VVQGPVKTQFGYHLLEVTSR 91


>gi|319943482|ref|ZP_08017764.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
           51599]
 gi|319743297|gb|EFV95702.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
           51599]
          Length = 203

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 11/138 (7%)

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      IS++ +  EY+  ++     ++ TV  ++  ++ EA +    L+ G  F + A
Sbjct: 47  DVPPPQPISDEVIGQEYDAYRQSVKGQKMYTVSYILLSDETEARQWIARLRSGASFEKAA 106

Query: 301 EEQG----KSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDF-TPVIHGSFGYVIAHV 353
            E       +     LG+F+  +     V L D++    K G      +  S G+ I  +
Sbjct: 107 REHSRHPLSAKEGGKLGTFATCRWARDTVQLLDTL----KPGQIYAKPVKASAGWGIYRL 162

Query: 354 SNIKPSFTVSFQEVKKDI 371
             +K    +S+ + K+ +
Sbjct: 163 DAVKALEPISYAQYKEQL 180


>gi|149194720|ref|ZP_01871815.1| possible periplasmic protein [Caminibacter mediatlanticus TB-2]
 gi|149135143|gb|EDM23624.1| possible periplasmic protein [Caminibacter mediatlanticus TB-2]
          Length = 271

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 68/230 (29%), Gaps = 66/230 (28%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K  L+++F+ F+   + D          V  V  + +       ++K             
Sbjct: 3   KFILILIFLNFVNAKIVD--------RVVAVVNGEPITSYDITKTFKS----------LN 44

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           ++          ++ L+ L+    ++  I+  G+E D   +   I +        + F  
Sbjct: 45  ISP---------REALNILIDQKIIENEIKRRGIEVDDFDIENAIEKIAK-QNGMSVFE- 93

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
             F + L   G     ++ +  K + +  +    V                         
Sbjct: 94  --FKNYLKERG-EYNNFLKNLKKDIQKQKLFAQIVNS----------------------- 127

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-ISYILFDVHEKE 243
                         SN  L  ++++ K+ +   +    I YI  +  E +
Sbjct: 128 ----------KLKVSNKELKNFYDQNKEKFTTFKQIEVIEYISQNPDELK 167



 Score = 56.9 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 13/173 (7%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           +N+     K I            K+++SN EL+  Y++NKEK+ + +   V + +  N  
Sbjct: 105 NNFLKNLKKDIQKQKLFAQIVNSKLKVSNKELKNFYDQNKEKFTTFKQIEVIEYISQNPD 164

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
           E     + +KK             S   I    F    IP   +   +F+  K+G+FTP+
Sbjct: 165 E----LKHIKKNPL-------YNSSNIKIENRVFKYNQIPLNLMF--LFNSTKEGEFTPI 211

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           I+    YV+ +++  +    + F+++K  IANQ+   K +  +KE +  L+  
Sbjct: 212 INNGNSYVMFYINKKEGKVILPFEQIKNIIANQLMQQKRNAILKEYFNTLKNQ 264


>gi|17549753|ref|NP_523093.1| signal peptide protein [Ralstonia solanacearum GMI1000]
 gi|17432008|emb|CAD18685.1| putative ppic-type peptidyl-prolyl cis-trans isomerase signal
           peptide protein [Ralstonia solanacearum GMI1000]
          Length = 282

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 67/236 (28%), Gaps = 27/236 (11%)

Query: 159 LSRTDVVGMF-VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
           +++  +       G++ +  +    K+              N     +     A      
Sbjct: 44  ITQEQLDRAIAQSGVQANPQVAQALKQQLIARELFRQQAAKNPAYDKLPAVKQA------ 97

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
                     E          + +  K   I+ ++++A Y+         E +    +  
Sbjct: 98  --------MQEAHDAVITQAWLKDNIKPAPITEEQVKARYDAIVASLGDKEYK-ARVIQL 148

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLA 326
            +   A +    LK+G  F +LA++   + + +  G              K     + LA
Sbjct: 149 GDDVTAAQVLAQLKQGGDFAKLAQQYSTAPNKVRGGDMDWVSFKVPVEEGKTQNLPLPLA 208

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             I +L      T  +       I  V   +P+    +  V+  I   +   +   
Sbjct: 209 REIAALGTGATSTAPVEVGSQRYIVKVEAARPTQVPGYDTVRPAIRQALETAELER 264


>gi|254362982|ref|ZP_04979046.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213]
 gi|153094638|gb|EDN75442.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213]
          Length = 314

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 108/384 (28%), Gaps = 88/384 (22%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           + K    V      +               V  V    +               + + +G
Sbjct: 3   LVKSLFAVAVATMSLT----QTAHAFEERVVALVNDTPI-----------MQSQVQRVLG 47

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
               +E A+   +D+ I D LV  A      ++ G++     V   +    +     N  
Sbjct: 48  KKKATETAQRAAIDQVIDDMLVQQAM-----KEAGVKVSPAAVNQAVENVAI----QNGI 98

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRS 191
           ++   +  L  +GI  +++  +  + ++   V        ++ +   +    +       
Sbjct: 99  TYGQLLDALDYQGITLEQFKRNIAQQMAMEQVRHISISKSIQVAPQQVQALAK------- 151

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
              ++  ++    +   S                     RIS+IL   +      +    
Sbjct: 152 --ELMAKDKAAGKLKTVSGKE-----------------HRISHILLKTNPILNDAQ---- 188

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDI 310
                                       + +       +  GK  F + A+      +  
Sbjct: 189 ---------------------------AKAKLSSLTTDINSGKISFEEAAKTHSVDYASG 221

Query: 311 SLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           + G    F+   I D + A+ + S  K    +      FG+ I  V++ +     +    
Sbjct: 222 ADGGDLGFNFLEIYDPAFAN-VASKIKPNQISAPFKSQFGWHILKVTDTRNG-DRTEDAY 279

Query: 368 KKDIANQMRITKASEKVKEDYKRL 391
            +    Q+   +A E  K+  K L
Sbjct: 280 HQRAYQQLVNKQAEEASKDWVKAL 303


>gi|125776498|ref|XP_001359294.1| GA11241 [Drosophila pseudoobscura pseudoobscura]
 gi|54639037|gb|EAL28439.1| GA11241 [Drosophila pseudoobscura pseudoobscura]
          Length = 130

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK G+KF ++A    +  +     LG   +  +      D+
Sbjct: 38  KVRHILCEKQGKIMEAMEKLKAGQKFPEVATAYSEDKARQGGDLGWQIRGAMVGP-FQDA 96

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L            P +   FGY I  V   K
Sbjct: 97  AFALPISNVNNPVYTDPPVKTKFGYHIIMVEGKK 130


>gi|86144485|ref|ZP_01062817.1| peptidyl-prolyl cis-trans isomerase [Vibrio sp. MED222]
 gi|218676075|ref|YP_002394894.1| Peptidyl-prolyl cis-trans isomerase C [Vibrio splendidus LGP32]
 gi|85837384|gb|EAQ55496.1| peptidyl-prolyl cis-trans isomerase [Vibrio sp. MED222]
 gi|218324343|emb|CAV25695.1| Peptidyl-prolyl cis-trans isomerase C [Vibrio splendidus LGP32]
          Length = 92

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  +++ A++    LKKG KF  LA++     S      LG F K  +         F
Sbjct: 9   HILVKHKELAEDIMTQLKKGAKFQTLAKKHSTCPSGKKGGDLGEFKKGQMV-PQFDKICF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GETLVPHLVKTKFGWHVVKV 88


>gi|91794656|ref|YP_564307.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
 gi|91716658|gb|ABE56584.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
          Length = 92

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIF 330
            ++  +Q +A++  + L+ G KF  LA++      + +  +LG F K  +         F
Sbjct: 9   HILVKHQTQAEDIIKQLQNGAKFDVLAKKHSTCPSAKNGGNLGEFKKGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
           S    G+          FG+ +  V
Sbjct: 68  S----GELIIPHLVKTKFGWHVIKV 88


>gi|124266895|ref|YP_001020899.1| putative rotamase/peptidyl-prolyl cis-trans isomerase family
           protein [Methylibium petroleiphilum PM1]
 gi|124259670|gb|ABM94664.1| putative rotamase/peptidyl-prolyl cis-trans isomerase family
           protein [Methylibium petroleiphilum PM1]
          Length = 264

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 79/263 (30%), Gaps = 29/263 (11%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           +   E      + L R   +   +        +         E      I        A+
Sbjct: 21  LPADELRRRAHQELLRQQAMAQGLLAADDPAPVEGAPSEAASE-----AIEALLSQALAV 75

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
            +P  A   +W       +   E  R+ +ILF        ++I+    +A       +  
Sbjct: 76  PEPDEATCRRWHAANPTRFAQGERVRVRHILF---GVTDGVDITRLRARA-------EAC 125

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPD 322
             E+R+  +          E    + +G +F   A       S      LG         
Sbjct: 126 LVELRSRSR---------SEIDAPVAEGDRFATAAARLSNCPSGEHGGELGWLEAADCA- 175

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
              A ++F   + G    ++H  FG  +  V   +      F+ V+  +   ++    + 
Sbjct: 176 PEFARALFGQPELGMLPRLVHTRFGLHVVEVLQRQSGRVPGFEAVQASVRAALQRQAFAT 235

Query: 383 KVKEDYKRLE-EFLALGTSMDEI 404
            +++  +RL  E    G  +D  
Sbjct: 236 ALRQHLQRLAGEAHIEGVELDAA 258


>gi|225682401|gb|EEH20685.1| predicted protein [Paracoccidioides brasiliensis Pb03]
 gi|226289798|gb|EEH45282.1| predicted protein [Paracoccidioides brasiliensis Pb18]
          Length = 127

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF ++A E  +  +    SLG   +  + D S   + 
Sbjct: 38  VRHILCEKHSKKEEALEKLRNGAKFDEVAREFSEDKARQGGSLGWKIRGSL-DASFEKAA 96

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           + L +               FGY I  V   K
Sbjct: 97  YDL-EPSTTGNPKWTEVKTGFGYHIIMVEGRK 127


>gi|203283968|ref|YP_002221708.1| hypothetical protein BDU_44 [Borrelia duttonii Ly]
 gi|201083411|gb|ACH93002.1| uncharacterized conserved protein [Borrelia duttonii Ly]
          Length = 502

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 114/360 (31%), Gaps = 78/360 (21%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKV------PFSSFINSWK 61
                  L+++   F+I  L   LF  + SS +   G    Q +       F+ ++N + 
Sbjct: 22  GMWGIFALILIVFGFIIAPLMPGLFDTTDSSNL-KFGFYKGQPIYYAKDNKFAQYVNFYS 80

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                + +   + ++        + +      V         +          +   +  
Sbjct: 81  NFYSKLKRDNNYDID------YFIWRLAFMKYVEDIAFLDLAKSSNFYISKSVLSQNVMN 134

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
           SP++   +  FS   +      +    K Y D   + L  +++          S+ LL  
Sbjct: 135 SPVYLDSNGNFSPKRYNKVSDYQKF--KIYSDAV-ENLLSSNIQIFLNSSFVFSDFLLSA 191

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
            K      +++ YI L+    P     S      + E  +  +++ +   IS+       
Sbjct: 192 VKNMSKIRKNIAYITLSYEDFPKDKVIS------YAEDNQKLFKSLDLVSISFKNLS--- 242

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
                                                   +A++A+  L KG  F ++A+
Sbjct: 243 ----------------------------------------DANDAYDKLFKGMPFEEVAK 262

Query: 302 EQGKSLSDISLGSFSKEYIPDVSL-----AD--SIFSLAKKGDFTPV--IHGSFGYVIAH 352
              + +++    + S++Y  D+ L      D  SIFSL K  +FT       S  Y I  
Sbjct: 263 FYSEDVANFKGIASSRQYYFDLDLMLKEKEDLSSIFSL-KVNEFTNPIKSKSSGEYKIYK 321


>gi|163755249|ref|ZP_02162369.1| putative exported peptidyl-prolyl cis-trans isomerase [Kordia
           algicida OT-1]
 gi|161324669|gb|EDP95998.1| putative exported peptidyl-prolyl cis-trans isomerase [Kordia
           algicida OT-1]
          Length = 491

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 37/186 (19%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFS--PEIRTVEQLVF---PNQKEADEAFQSLK--- 291
            +  + +EI+ +E++  +EK              V Q++    P+++  D+  Q LK   
Sbjct: 186 SKVVRDVEITPEEVRQFFEKIPADQRPRIGVELEVSQIIIEPEPSKEAVDKVIQKLKDIK 245

Query: 292 ----KGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
                G  F   A    K  +    G     +K         D  FSL ++G+ +     
Sbjct: 246 AEVEGGSSFGTKAILYSKDRASGRQGGLMPINKRQSLAKEFKDVAFSL-QQGEISDPFET 304

Query: 345 SFGYVIAHVSNIK------------PSFTVS-FQEVKKDI--------ANQMRITKASEK 383
            FG+ I  V  ++            P  T    +E +K+I        A ++   +A+  
Sbjct: 305 DFGWHIVMVEKVRGQERDVRHILLIPEVTADRLEEARKEIDTLRTRIVAGELTFEEAARS 364

Query: 384 VKEDYK 389
             +D +
Sbjct: 365 FSDDKE 370


>gi|149176439|ref|ZP_01855053.1| probable peptidyl-prolyl cis-trans isomerase [Planctomyces maris
           DSM 8797]
 gi|148844791|gb|EDL59140.1| probable peptidyl-prolyl cis-trans isomerase [Planctomyces maris
           DSM 8797]
          Length = 369

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 85/238 (35%), Gaps = 20/238 (8%)

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK-IEISNDELQAEYEKNKEKYFSPEI 269
            +L    +   + YR    + + + +  + +   +  ++S D++Q  + ++         
Sbjct: 143 EMLQAERKMNPNQYR----RNVIWPMLALRKLAGQRTKLSQDQVQKAFVRDYGP-----R 193

Query: 270 RTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLSDISLGSFSKE---YIPDVSL 325
                ++  N   A + +  +KK    F + A +     +  +LG   +    +  + SL
Sbjct: 194 VKARMIMMDNLSRAQKVWDEVKKNPGDFERFARDYSIEPNSRALGGAIQPIPQFSENESL 253

Query: 326 ADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             + F L K+G+ + ++      Y I            S +EV+  + +Q+   +  E V
Sbjct: 254 WKAAFKL-KEGEVSGIVQIGLSRYAILLCEGRTEPIVNSIKEVENQLVDQLTEEQTQEAV 312

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
              + +L+E     T +D          +             G+   AIP   Q L  
Sbjct: 313 ARVFAKLKEQ----TRVDNYITGTTTGGVSQTSGTSFSNGQPGQSGGAIPSPTQGLNG 366


>gi|298504944|gb|ADI83667.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           sulfurreducens KN400]
          Length = 92

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++  ++ E  +    ++ G +F  +A       S      LG+F++  +      D
Sbjct: 5   TARHILVSSEAECLQLKSEIEAGAEFADVARRHSLCPSRAQGGDLGTFTQGQMVK-EFDD 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +FS  +       +   FGY +  ++  
Sbjct: 64  IVFS-GEINKVLGPVRTQFGYHLIEITKR 91


>gi|301104936|ref|XP_002901552.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Phytophthora infestans T30-4]
 gi|262100556|gb|EEY58608.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Phytophthora infestans T30-4]
          Length = 265

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 14/104 (13%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGK----KFIQLAEEQGKSLS---DISLGSFSKEYIP 321
                 ++   + EAD+    L +      KF QLA+E  K  S      LG+F +  + 
Sbjct: 31  QAHASHILVDTEAEADDLSVQLGEASNLFLKFAQLAKEHSKCPSSRKGGDLGTFDRGQMV 90

Query: 322 DVSLADSIFSLAKKGDFTPVI--HGSFGYVIAHVSNIKPSFTVS 363
                   F    +G+   V      FG+ +  +S         
Sbjct: 91  -PEFDKVAF----EGEIGVVHKVKTQFGWHLVLISRRLDGTEEP 129



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 10/95 (10%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKK----FIQLAEEQGKSLS---DISLGSFSKEYIP 321
                 ++  ++ EAD+ F+ +   +       +LA +     S      LG F +  + 
Sbjct: 167 RARAFHILVKSEDEADKLFKEIDAAEDKKTKLSELAGKHSTCPSGKKGGDLGMFGRGEMV 226

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
                  +F   + G+   V    FG+ +   +  
Sbjct: 227 -PQFDKVVFE-GEVGELAKV-QTQFGWHVLLCTER 258


>gi|320157503|ref|YP_004189882.1| survival protein SurA (Peptidyl-prolyl cis-trans isomerase SurA)
           [Vibrio vulnificus MO6-24/O]
 gi|319932815|gb|ADV87679.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase SurA) [Vibrio vulnificus MO6-24/O]
          Length = 432

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 22/204 (10%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277
             +R    K ++          ++I I   E+    E   ++  +     +  +      
Sbjct: 129 AEFREQIRKEMAASEARNALVRRRINILPAEVDNLAELLSKETNASVEYRIGHIQLRFTD 188

Query: 278 -----PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSI 329
                  + +A E  + LK+G  F  +A    K   +L     G   KE +P    AD I
Sbjct: 189 GQDKSALEAQAKELVEKLKQGADFSTMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI 247

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRITKASEKV 384
             +  KG          G+ I  + ++K   TV+  EV            +    A  ++
Sbjct: 248 -KMQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILLKPTVILSDEGAQREL 306

Query: 385 KEDYKRLEEFLALGTSMDEISRRE 408
            E  +R+    A   +  E++++ 
Sbjct: 307 NEFIRRI---RAGEATFGELAQQY 327



 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/405 (14%), Positives = 125/405 (30%), Gaps = 70/405 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    +  S    + K       +    + +++      L+++I+D L+     
Sbjct: 29  DKVAVIVNDGVILQSDIDTATKTLRANAKKSGQALPDADV-----LNEQIVDKLIIDTLQ 83

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG+  D  R+   I        ++N  + D   + +A EG++  E+ +   K +
Sbjct: 84  TQEADRIGVRIDDTRLNQAIEEI----ARNNNQTIDELSAAIASEGVSYAEFREQIRKEM 139

Query: 160 SRTDVVGMFV-GGMRPSNLLLDQAKRFYFE--NRSVDYIV----------LNNRHVPAIA 206
           + ++     V   +      +D       +  N SV+Y +           +   + A A
Sbjct: 140 AASEARNALVRRRINILPAEVDNLAELLSKETNASVEYRIGHIQLRFTDGQDKSALEAQA 199

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRI----SYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                 L Q  +     Y   +  +      +      E      I  D+++    +NK 
Sbjct: 200 KELVEKLKQGADFSTMAYTYSKGPKALQGGDWGWMRKEEMP---TIFADQIKM---QNKG 253

Query: 263 KYFSPEI-----------------------RTVEQLVFP---------NQKEADEAFQSL 290
               P                              ++            Q+E +E  + +
Sbjct: 254 SIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILLKPTVILSDEGAQRELNEFIRRI 313

Query: 291 KKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSF 346
           + G+  F +LA++  +     +         PD         + +L   G  +       
Sbjct: 314 RAGEATFGELAQQYSQDPGSAAQDGELGYQTPDLYVPEFKHQVETLP-VGTISEPFKTVH 372

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G+ I  V + +     +   +K      +   K +E+V    + L
Sbjct: 373 GWHIVEVLDRRE-VDRTDSAMKNKAYRILFNRKFNEEVGAWMQEL 416


>gi|304410941|ref|ZP_07392558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS183]
 gi|307304888|ref|ZP_07584638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           BA175]
 gi|304350838|gb|EFM15239.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS183]
 gi|306912290|gb|EFN42714.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           BA175]
          Length = 92

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 10/88 (11%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  ++++A++  + L  G  F  LA+      S      LG F K  +       
Sbjct: 6   AAVHILVKHKEQAEDIVKQLNNGANFSVLAKRFSSCPSAKKGGDLGEFKKGQMV-PQFDK 64

Query: 328 SIFSLAKKGDFTPVI--HGSFGYVIAHV 353
             FS    G+          FG+ +  V
Sbjct: 65  VAFS----GELLVPHIVKTKFGWHVVKV 88


>gi|303316792|ref|XP_003068398.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240108079|gb|EER26253.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 126

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA   L+ G KF ++A E  +  +    SLG   +  + D +   + 
Sbjct: 37  VRHILCEKHSKKEEALAKLRAGAKFDEVAREFSEDKARQGGSLGWKIRGSL-DAAFEKAA 95

Query: 330 FSLAKKGDFTPVI---HGSFGYVIAHVSNIK 357
           + L      +P        FGY I  V   K
Sbjct: 96  YDLEPSTTASPKYAEVKTGFGYHIIMVEGRK 126


>gi|89891028|ref|ZP_01202536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium BBFL7]
 gi|89516672|gb|EAS19331.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium BBFL7]
          Length = 453

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 84/284 (29%), Gaps = 59/284 (20%)

Query: 154 HYTKMLSRTDVVG--MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
              + + R  +         +  S+  ++         R          +   I     A
Sbjct: 69  QLIESILREKMFAHHAVQDSITVSDQEVEAETD----QRI--------AYFKGILGSDEA 116

Query: 212 VLTQWFEKYKDNYRAPE---YKRISYILFDVHEKEKKIEISNDELQAEY----EKNKEKY 264
           VL ++ +      R+      + +           +++EI+ +E++  +    E  +  +
Sbjct: 117 VLKKYQKSSMPELRSALNRITRDMKLAQRMQQRITEEVEITPEEVREFFYDLPEDERPLF 176

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQS-----------LKKGKKFIQLAEEQGKSLSDISLG 313
            +     + Q+V   +   D                L+ G  F   A    + ++    G
Sbjct: 177 NT--EVEMAQIVVKPKPSEDAIKDVVDKLNEYRTDVLENGASFAAKAALFSEDVATERQG 234

Query: 314 SF---SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP------------ 358
                 +         ++ FSL + G+ +      FG+ I  V  +K             
Sbjct: 235 GIISLKRGDPFVKEFKEAAFSLTE-GEVSEPFETVFGWHILKVEKVKGQVRDVRHILLYP 293

Query: 359 --------SFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEE 393
                          E++  I   ++   +A+ ++ ++ +  + 
Sbjct: 294 YISVAQVNDAKQKLDEMRDRIILGEITFDQAAREMSDEKETAKN 337


>gi|213402891|ref|XP_002172218.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           [Schizosaccharomyces japonicus yFS275]
 gi|212000265|gb|EEB05925.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           [Schizosaccharomyces japonicus yFS275]
          Length = 101

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     +  +A + L  G++F ++A++  +  +    +LG  ++  +      D+ 
Sbjct: 12  VRHILCEKHSKIMQAQEKLNAGERFDKVAQQFSEDKAKRGGNLGWMTRGSMVGP-FQDAA 70

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           F L +       I      +FGY I  +   K
Sbjct: 71  FKL-EPSKVDKPITTMVKTNFGYHIIMIEGKK 101


>gi|198276169|ref|ZP_03208700.1| hypothetical protein BACPLE_02358 [Bacteroides plebeius DSM 17135]
 gi|198270981|gb|EDY95251.1| hypothetical protein BACPLE_02358 [Bacteroides plebeius DSM 17135]
          Length = 467

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 85/254 (33%), Gaps = 32/254 (12%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP----------SNAVLTQWFEKYKDNYRAPEYK 230
             ++ +     +D I ++++ V    +           S   L +++ K     R    +
Sbjct: 83  AVQKLFLHQAEIDSIEVSDQEVLQQVETRISWLTDQIGSKEKLEEYYNKTSTQIREMLRE 142

Query: 231 RISYILFDVHEKEK---KIEISNDELQAEYEK--NKEKYFSPEIRTVEQLV--------- 276
            I   L     ++K    I+++  E++  + K       F P    V+ +          
Sbjct: 143 NIRDGLTVQEMQKKIVGDIKLTPAEVRNYFSKLPQDSIPFVPTQVEVQIITREPKIKEEE 202

Query: 277 -FPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFS 331
               +KE  +    + KG+  F  LA    +       G    F+         A+ +F+
Sbjct: 203 IERVKKELRDFTDRINKGETTFSTLARMYSEDPGSARRGGEYGFTGRGELTPEFANVVFN 262

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           L      + V    +GY IA +   +     S++ +   I  ++   +   ++ +     
Sbjct: 263 LTDPKKISKVFETEYGYHIAQLIEKRGDRV-SYRHI--LIKPRVDEKEIEAELNKLDTLA 319

Query: 392 EEFLALGTSMDEIS 405
            +      + DE +
Sbjct: 320 NDIRKGKVTFDEAA 333


>gi|85374605|ref|YP_458667.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594]
 gi|84787688|gb|ABC63870.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594]
          Length = 473

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 88/277 (31%), Gaps = 21/277 (7%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  V+   +           Q      +  +  Y  L  ++     D  +A L      
Sbjct: 119 VRMQVLRNLIDETLQVQEAAAQEINITADEVNQRYAQLAAQNFGNQPDAMDAYLLS-IGS 177

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
              + +      +++           I +S +E+    ++ +E   + E   +E  +   
Sbjct: 178 SPASLKRQIQGELAWQRLLRRNIAPFINVSEEEVNDLIKRLEESRGTEEYHIMEIYLPAT 237

Query: 280 QKEADEAFQ-------SLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSI 329
            +      Q        L+ G  F+  A    E   + +   LG    E +P   +A + 
Sbjct: 238 AETRQAVIQNGQQIMEQLRGGASFLAYARQFSESSTAATGGDLGFVRLETLP-AEMATAA 296

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKP-------SFTVSFQEVKKDIANQMRITKASE 382
            ++ + G  T  +    G+VI ++ + +           +S +++       +   +A+ 
Sbjct: 297 QTM-QPGQLTGPVEIPGGFVIIYLRDKRAVLTADPRDALLSLKQISISFEEGISQEEATS 355

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
           KV+     +      G + +  ++      +    + 
Sbjct: 356 KVEAFAGAVGSIRGCGDA-ERAAQTVGAEVVTNDQIR 391



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 60/192 (31%), Gaps = 15/192 (7%)

Query: 29  GLSDALFSVSGSS-----TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV 83
           G+ D    +  S+         V    +  +      +  L + S + G +   E  R  
Sbjct: 64  GIPDNFSLLGESNPNVRKATAVVNGSVITGTDID--HRTALVVASAQ-GELAEEEMVR-- 118

Query: 84  GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
            +  ++L NL+      Q      +      V    A+        N+   D   + L  
Sbjct: 119 -VRMQVLRNLIDETLQVQEAAAQEINITADEVNQRYAQLAA-QNFGNQ--PDAMDAYLLS 174

Query: 144 EGINEKEYIDHYTKMLS-RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
            G +           L+ +  +       +  S   ++   +   E+R  +   +   ++
Sbjct: 175 IGSSPASLKRQIQGELAWQRLLRRNIAPFINVSEEEVNDLIKRLEESRGTEEYHIMEIYL 234

Query: 203 PAIADPSNAVLT 214
           PA A+   AV+ 
Sbjct: 235 PATAETRQAVIQ 246


>gi|332524713|ref|ZP_08400912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrivivax
           benzoatilyticus JA2]
 gi|332108021|gb|EGJ09245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrivivax
           benzoatilyticus JA2]
          Length = 436

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/476 (11%), Positives = 142/476 (29%), Gaps = 91/476 (19%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
           +G   V  V ++ V  +   +  ++ L   + + G   + E      + K++LD+L+   
Sbjct: 32  NGDYIVAIVNQEAVTAAEVESRVQRVL-QAAARSGAQPSLEV-----VRKRVLDDLIEER 85

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
            +  +  D G+  +   V   I                      A+  +      D   +
Sbjct: 86  AIVTYARDSGIRVEDPEVDRAIQSVA------------------AQNQLT----ADQLRE 123

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            L    +            +L+++ +      R                  ++  + ++ 
Sbjct: 124 RLRADGLDYARFRANLRDQILIERVREREVYQR---------------IRVTDGEVDRY- 167

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
                                     ++   +  +++    +       PE    EQ++ 
Sbjct: 168 ------------------------LAQQNIATQADVELNIAQILV--IVPEGGD-EQVLA 200

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKG 336
             +  A++A   ++ G+ F  +A E  +  +    G    +       L          G
Sbjct: 201 ARKARAEQALARVRGGEDFAAVAREISEDANQERGGVIGLRPSARLPDLFVEAVRDVPAG 260

Query: 337 DFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRITKASEKVKEDYKR 390
           +  P ++    G+ +  V   K +  V   +          + ++    A++++ E  ++
Sbjct: 261 EVKPELVRSGAGFHVLKVVERKETMAVRVTQTHARHILVRTSERVSPEMAAQRLAEFRRQ 320

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
           +   ++     ++++R+        P     G    G  V   P  E+ + R+     P+
Sbjct: 321 I---VSGQRRFEDVARQYSEDG-SAPSGGDLGWFAPGTMV---PEFEEAMNRL-----PI 368

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
                          +Q+ E          +V    +   +  K  +  +  A  L
Sbjct: 369 EGVSPPVRSRFGVHLIQVLERRDTAVEAR-QVREQARNVLRERKFDDAYTEWAKDL 423


>gi|15640000|ref|NP_219453.1| basic membrane protein (tpn39b) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189026239|ref|YP_001934011.1| basic membrane protein [Treponema pallidum subsp. pallidum SS14]
 gi|231640|sp|P29725|BMP_TREPA RecName: Full=Basic membrane protein; Flags: Precursor
 gi|155055|gb|AAA27475.1| basic membrane protein precursor [Treponema pallidum]
 gi|3323343|gb|AAC65966.1| basic membrane protein (tpn39b) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018814|gb|ACD71432.1| basic membrane protein [Treponema pallidum subsp. pallidum SS14]
 gi|291060373|gb|ADD73108.1| basic membrane protein [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 361

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/393 (12%), Positives = 124/393 (31%), Gaps = 76/393 (19%)

Query: 41  STVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
             +  V    R+ V         K  +  I +++G  +++         ++ +D+L+   
Sbjct: 25  QPIAEVNLFRREPVTLGQI----KARISAIEKEMGKKLSTAE------RRQFMDSLIDEK 74

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE---GINEKEYIDH 154
              Q  E  G++     V                     F   L+++    + E E+ ++
Sbjct: 75  LFAQAAEKAGIQVTDAEVNQY------------------FNGMLSQQIGRAVTEAEFANY 116

Query: 155 Y--TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNA 211
               + +S    +    G       + +  K    +  +  Y+          +  P ++
Sbjct: 117 VKEKQNISLDQFMKQQNGM-----TMAEYKKFLKTQVSTQRYVAQKKADEFRNLKGPEDS 171

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
            +  ++E  K  +  P+  ++  I           +    E   + + +  K  +     
Sbjct: 172 QIRSYYELNKQAFFRPDTVKLFLISVPKGSGPAAAKAKAQEFVKKLKSSGVKATAD---- 227

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
                   + +A+ A      G+ ++      GK+    +    + E + +      IF 
Sbjct: 228 -------IKSKANGAQAGYSAGEIYL------GKTAVTATQLGLTMEALLE------IFG 268

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-VKKD--------IANQMRITKASE 382
           +   G  + V   +  Y    V   + +  ++  + V+ D        I N +      +
Sbjct: 269 MG-VGAVSDVNETANDYQCFIVLKKEEAKILTLSDLVEPDKTVSLYEFIKNLLTSQIQQK 327

Query: 383 KVKEDYKRLE-EFLALGTSMDEISRREKIVSID 414
            +++  + +  E    GT    ++  E    +D
Sbjct: 328 ALEDAIREVSAELRKSGTYKVFLADAELGKVLD 360


>gi|326470862|gb|EGD94871.1| peptidyl-prolyl cis-trans isomerase [Trichophyton tonsurans CBS
           112818]
 gi|326478426|gb|EGE02436.1| peptidyl-prolyl cis-trans isomerase pin4 [Trichophyton equinum CBS
           127.97]
          Length = 132

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF ++A E  +  +    SLG   +  + D +   + 
Sbjct: 43  VRHILCEKHSKKEEALEKLRAGAKFDEVAREFSEDKARQGGSLGWKVRGSL-DAAFEKAA 101

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           + L +               FGY I  V   K
Sbjct: 102 YEL-EPSTTGNPKYVEVKTGFGYHIIMVEGRK 132


>gi|126342882|ref|XP_001372681.1| PREDICTED: similar to cAMP responsive element binding protein 5
           [Monodelphis domestica]
          Length = 183

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++        EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 91  KVRHILCEKYGRIMEAMEMLKSGVRFNEVASQYSEDKARQGGDLGWMTRGSMVGP-FQEA 149

Query: 329 IFSLAKKG-----DFTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FGY +  +   K
Sbjct: 150 AFALPVSGLDKPVYTDPPVKTKFGYHVIMIEGRK 183


>gi|325294667|ref|YP_004281181.1| hypothetical protein Dester_0468 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065115|gb|ADY73122.1| hypothetical protein Dester_0468 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 426

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 60/145 (41%), Gaps = 3/145 (2%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +   K+++++ E++  YEK+K +  +PE   +E   F ++ +A +A   ++KGK   ++
Sbjct: 261 KKILSKVKVTDKEIKEYYEKHKSELKTPERADIEVFEFSDENKAKKALLDIEKGKSPKEV 320

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
             +   S         +   I    ++  +F    K     V+      +I  V    P+
Sbjct: 321 IPKNVYSTGKEWK--VTSADIDRNPVSALVFKEKNKNVNVLVMPDGRALLIV-VKKRYPA 377

Query: 360 FTVSFQEVKKDIANQMRITKASEKV 384
            T+ + +    I   +   KA +  
Sbjct: 378 GTLPYGDAYSQIKRMLTSEKARKLA 402



 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 112/296 (37%), Gaps = 32/296 (10%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKN-KEKYFSPEIRTVEQLVFPNQK---EADE 285
           ++++Y     + +  ++++S++E++   EK  K K  +PE+    ++    QK   + +E
Sbjct: 113 RQLAYRYL--NSQVGEVKVSDEEVKKAIEKYYKGKKVTPELEKAVRINLEAQKFQSKRNE 170

Query: 286 AFQSLKKGKKFIQ---------LAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAK 334
             ++++   +F +         +A   G ++    +     + +P   L +++  + L+K
Sbjct: 171 ILKNIENKIEFKEKKSYKPNDVVATYNGITIYYKDIEPIIPKNMPKERLKEAVTYYVLSK 230

Query: 335 KGDFTPVIH-GSFGYVIAHVSN---IKPSFTVSFQEVK---KDIANQMRITKASEKVKED 387
                 +     F      +     +K        +VK   K+I       K+  K  E 
Sbjct: 231 LAQKEGIDKKTDFQLTYNRLLEDLAVKDFEKKILSKVKVTDKEIKEYYEKHKSELKTPER 290

Query: 388 YK----RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
                    +      ++ +I + +    +    V   GK+ K   V +       +  +
Sbjct: 291 ADIEVFEFSDENKAKKALLDIEKGKSPKEVIPKNVYSTGKEWK---VTSADIDRNPVSAL 347

Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
             K+   + +  + +PDG  + + +K+  PA      +  + +K+   + K  +  
Sbjct: 348 VFKEKNKNVN-VLVMPDGRALLIVVKKRYPAGTLPYGDAYSQIKRMLTSEKARKLA 402


>gi|145255175|ref|XP_001398885.1| peptidyl-prolyl cis-trans isomerase pin4 [Aspergillus niger CBS
           513.88]
 gi|134084475|emb|CAK43229.1| unnamed protein product [Aspergillus niger]
          Length = 124

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF ++A E  +  +    SLG  ++  + D +   + 
Sbjct: 35  VRHILCEKFSKKEEALEKLRNGAKFDEVAREFSEDKARQGGSLGWKTRGSL-DATFEKAA 93

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           + L +               FGY I  V   K
Sbjct: 94  YDL-EPSTTGNPKYVDVKTGFGYHIIMVEGRK 124


>gi|253567247|ref|ZP_04844697.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
 gi|251944078|gb|EES84597.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
          Length = 517

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/425 (13%), Positives = 127/425 (29%), Gaps = 70/425 (16%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVE-----------QLVFPNQKEADEAFQSLKK--GKK 295
                +  Y++ K +  + E++ +              +   Q   D  +  L+   G  
Sbjct: 107 DEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPHHLREAQNLMDSLYHVLEAHPGID 166

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  L  +      +  +G             +  FSL K G+++       G  I  V+ 
Sbjct: 167 FKTLVNKYSDDKKEFWMGWLQTS----QEFEEVAFSL-KDGEYSKPFFTPKGIQIVKVTG 221

Query: 356 IKPSFTVSFQEVKKDIANQMRI----TKASEKVKEDYKRLEEFLALGTSMDEI--SRREK 409
            +      F++++ ++ +++       K  E      K + ++      M E+  S R  
Sbjct: 222 RRE--IPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKSICQYTPDKAGMKELLASGRTS 279

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
                L    F GKD +     A P   +     F     L  ++            +++
Sbjct: 280 RTLFTLDGKSFTGKDFERFA-DAHPMGIKRQLNAFVVKSILDYENN-----------RLE 327

Query: 470 ESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
           +  P     L++   D +       ++ +   S +  L   + +   ++         ++
Sbjct: 328 QKYPDFRLALQQRRDDLLLAAITRRESRQVSLSDSVALKAFFKEHRTDYNWDSPRYRGAV 387

Query: 529 LTTNQINRMDNENKFFG-------YDGISQVFSGPVE----MVKCFPIENGLSYVVFKVT 577
           L       + +  KF          D I   F+ P       ++      G +  V K+ 
Sbjct: 388 LHGTHKKTLKSARKFLKKLPEEEWKDAIRLTFNTPASPATIRIEQGTFAEGDNVFVDKLV 447

Query: 578 -------------------NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                                K GP    +  I  L +     L       L++   V +
Sbjct: 448 FKKGDFEPLKSYPFTVVLGEKKKGPESYHE-IIPQLIRDYQNHLDALWTERLRASAKVEI 506

Query: 619 HDNLI 623
           +  ++
Sbjct: 507 NQEVL 511


>gi|326423746|ref|NP_759646.2| survival protein SurA [Vibrio vulnificus CMCP6]
 gi|121956501|sp|Q8DED4|SURA_VIBVU RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|319999108|gb|AAO09173.2| Survival protein surA precursor (Peptidyl-prolyl cis-trans
           isomerase surA) [Vibrio vulnificus CMCP6]
          Length = 428

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 22/204 (10%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277
             +R    K ++          ++I I   E+    E   ++  +     +  +      
Sbjct: 125 AEFREQIRKEMAASEARNALVRRRINILPAEVDNLAELLSKETNASVEYRIGHIQLRFTD 184

Query: 278 -----PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSI 329
                  + +A E  + LK+G  F  +A    K   +L     G   KE +P    AD I
Sbjct: 185 GQDKSALEAQAKELVEKLKQGADFSTMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI 243

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRITKASEKV 384
             +  KG          G+ I  + ++K   TV+  EV            +    A  ++
Sbjct: 244 -KMQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILLKPTVILSDEGAQREL 302

Query: 385 KEDYKRLEEFLALGTSMDEISRRE 408
            E  +R+    A   +  E++++ 
Sbjct: 303 NEFIRRI---RAGEATFGELAQQY 323



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/405 (14%), Positives = 125/405 (30%), Gaps = 70/405 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
               V V    +  S    + K       +    + +++      L+++I+D L+     
Sbjct: 25  DKVAVIVNDGVILQSDIDTATKTLRANAKKSGQALPDADV-----LNEQIVDKLIIDTLQ 79

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + IG+  D  R+   I        ++N  + D   + +A EG++  E+ +   K +
Sbjct: 80  TQEADRIGVRIDDTRLNQAIEEI----ARNNNQTIDELSAAIASEGVSYAEFREQIRKEM 135

Query: 160 SRTDVVGMFV-GGMRPSNLLLDQAKRFYFE--NRSVDYIV----------LNNRHVPAIA 206
           + ++     V   +      +D       +  N SV+Y +           +   + A A
Sbjct: 136 AASEARNALVRRRINILPAEVDNLAELLSKETNASVEYRIGHIQLRFTDGQDKSALEAQA 195

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRI----SYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                 L Q  +     Y   +  +      +      E      I  D+++    +NK 
Sbjct: 196 KELVEKLKQGADFSTMAYTYSKGPKALQGGDWGWMRKEEMP---TIFADQIKM---QNKG 249

Query: 263 KYFSPEI-----------------------RTVEQLVFP---------NQKEADEAFQSL 290
               P                              ++            Q+E +E  + +
Sbjct: 250 SIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILLKPTVILSDEGAQRELNEFIRRI 309

Query: 291 KKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSF 346
           + G+  F +LA++  +     +         PD         + +L   G  +       
Sbjct: 310 RAGEATFGELAQQYSQDPGSAAQDGELGYQTPDLYVPEFKHQVETLP-VGTISEPFKTVH 368

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G+ I  V + +     +   +K      +   K +E+V    + L
Sbjct: 369 GWHIVEVLDRRE-VDRTDSAMKNKAYRILFNRKFNEEVGAWMQEL 412


>gi|67527584|ref|XP_661673.1| hypothetical protein AN4069.2 [Aspergillus nidulans FGSC A4]
 gi|74657276|sp|Q5B5W1|PIN4_EMENI RecName: Full=Peptidyl-prolyl cis-trans isomerase pin4;
           Short=PPIase pin4; AltName: Full=Parvulin-14;
           Short=Par14
 gi|40739767|gb|EAA58957.1| hypothetical protein AN4069.2 [Aspergillus nidulans FGSC A4]
 gi|259481343|tpe|CBF74769.1| TPA: Peptidyl-prolyl cis-trans isomerase pin4 (PPIase pin4)(EC
           5.2.1.8)(Parvulin pin4)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B5W1] [Aspergillus
           nidulans FGSC A4]
          Length = 128

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 14/109 (12%)

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSF 315
           + +K K    +   V  ++     + +EA + ++ G KF ++A E  +  +    SLG  
Sbjct: 25  DDSKGKMKGAQSVNVRHILCEKFSKKEEALEKIRNGAKFDEVAREYSEDKARQGGSLGWK 84

Query: 316 SKEYIPDVSLADSIFSL-------AKKGDFTPVIHGSFGYVIAHVSNIK 357
           SK  + ++   +  FSL        K G+        +GY I  V   K
Sbjct: 85  SKGEL-ELPFEEVAFSLEQSTTGNPKIGE----AKTGYGYHIIMVEGRK 128


>gi|126173880|ref|YP_001050029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
 gi|125997085|gb|ABN61160.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
          Length = 92

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 5/92 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
             T   L+  ++++     Q + +G  F Q+A       S      LGSF    +     
Sbjct: 3   QATARHLLVSSEEQCQALKQQILEGADFAQIARAHSSCPSGAQGGELGSFGPGMMV-REF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            + +FS     +    +   FG+ +  V++  
Sbjct: 62  DEVVFSAPLN-EVQGPVKTQFGFHLLEVTSRT 92


>gi|329957336|ref|ZP_08297856.1| PPIC-type PPIASE domain protein [Bacteroides clarus YIT 12056]
 gi|328523049|gb|EGF50152.1| PPIC-type PPIASE domain protein [Bacteroides clarus YIT 12056]
          Length = 455

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 86/252 (34%), Gaps = 29/252 (11%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK---KIEISNDELQAEYEK--NKEK 263
           S   + ++F K     R          L     ++K   +I+I+  E++  ++       
Sbjct: 112 SREKMEEYFNKTSSQIRETLRDNAREGLKVQKMQQKLVGEIKITPAEVRRYFKDLPQDSI 171

Query: 264 YFSPEIRTVEQLVFPNQKEADEAF----------QSLKKGK-KFIQLA----EEQGKSLS 308
            + P    V+ +    +   +E              + KG+  F  LA    E++G +++
Sbjct: 172 PYIPTQVEVQIITQQPKVPLEEIENVKKRLRDFTDRITKGETSFSTLARMYSEDRGTAIN 231

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
              +    + Y+ D + A+  F+L      + ++   FG+ I  +   +         V+
Sbjct: 232 GGEMPFTGRGYL-DPAFANVAFNLQDPNKVSKIVESEFGFHIIQLMEKRGDRIK----VR 286

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSIDLPLVDFAGKDVKG 427
             +       +A          + + +  G  S +E +    ++S D    +  G     
Sbjct: 287 HILLKPHIPEEALVSGMARLDSIADDIRNGKFSFEEAAS---VLSQDKDTRNNHGLLPNP 343

Query: 428 KEVAAIPYKEQL 439
               +    ++L
Sbjct: 344 NTNTSKFEMQEL 355


>gi|319953958|ref|YP_004165225.1| ppic-type peptidyl-prolyl cis-trans isomerase [Cellulophaga
           algicola DSM 14237]
 gi|319422618|gb|ADV49727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga
           algicola DSM 14237]
          Length = 485

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 93/293 (31%), Gaps = 50/293 (17%)

Query: 141 LAREGINEKEYID-HYTKMLSRTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
           L  +G++  +         L    +         +  ++  ++       +         
Sbjct: 86  LRNQGVSADDVSRCSLLGKLMEDRLYAHQAVQDSILVADDEVNATSDAQIQQLVTRVG-- 143

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI----EISNDEL 253
                      S   +  +++K  +     E  +I+ +       ++KI    EI+ +E+
Sbjct: 144 -----------SMEKVLSFYKKTDEESFREELYKINKLRMLSERMQRKIVEEIEITPEEV 192

Query: 254 QAEYEK----NKEKYFSP-EIRTVEQLVFPNQKEADEAFQSL--------KKGKKFIQLA 300
           +  + K     +  + S  EI  + +     ++E  +    L        +KG  F   A
Sbjct: 193 RQFFNKIPKDQRPVFGSELEIAQIVKKPVAPEEEKQKVVDRLNRIREDILEKGSSFSIKA 252

Query: 301 EEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +       G      K+        D  FSL   G+ +     +FGY I  V  I 
Sbjct: 253 ILNSEDPGSKQNGGYYKIDKQTGFVKEFKDVAFSL-NVGEVSEPFETTFGYHIITVEKIL 311

Query: 358 PSFTVSFQEVKKDIANQMRI----TKASEKVKEDYKRLEEFLALGT-SMDEIS 405
                     +++I + + I     +A +  K++   +   +  G  +  E +
Sbjct: 312 GQ--------EREIRHILMIPKVPQRALDASKQELDSIRNQIIEGKYTFAEAA 356


>gi|159042823|ref|YP_001531617.1| hypothetical protein Dshi_0267 [Dinoroseobacter shibae DFL 12]
 gi|157910583|gb|ABV92016.1| hypothetical protein Dshi_0267 [Dinoroseobacter shibae DFL 12]
          Length = 449

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 79/273 (28%), Gaps = 28/273 (10%)

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           Y      +++            I +S D+L   Y K   +    ++        P +  A
Sbjct: 91  YIRLRQAKVAEAYLGAR--FDAISVSEDDLVDMYLKTYGRLAWFDLTVA---TLPKRDAA 145

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
               Q +  GK F + A E G   S        ++ + D ++  +   L   G  +  + 
Sbjct: 146 QAFAQRVALGKSFAEAAREAGAEASLFEADWLRRKEL-DPAILRAAAVLHSGG-VSDPVR 203

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA--LGTSM 401
              G+ +     I       F  V+ ++    R  +  E ++      ++ +      + 
Sbjct: 204 SRSGWHVVRADMIW--HAPPFFGVRDELTKLARFEQVLEALRTQSDAPQDLIYLLENETR 261

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKE----------VAAIPYKEQLLFRVF------G 445
             ++       +      +       +E          ++A P ++  L  V        
Sbjct: 262 RFLAEAALAGGVGHGPFVWRSSKRYLEEHGDRVEYLVRLSAFPTRDAALDAVDYVRNRHR 321

Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
             +           D    WV+    +PA    
Sbjct: 322 ATEGFEPQPDWRPVDDQTAWVRPST-LPASLMP 353


>gi|320101858|ref|YP_004177449.1| hypothetical protein Isop_0305 [Isosphaera pallida ATCC 43644]
 gi|319749140|gb|ADV60900.1| hypothetical protein Isop_0305 [Isosphaera pallida ATCC 43644]
          Length = 449

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 124/378 (32%), Gaps = 56/378 (14%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS------- 209
           ++++R  +    V       L    A+    +      + +    + A  D         
Sbjct: 84  QVITRQMLSDECVARRGVEILETLIARVLIDQAIQAQGLSVTAEEINAEIDSVAQRMAGL 143

Query: 210 --NAVLTQWFEKYKDNYRAPEY--KRISYILFDVHEKEKK-IEISNDELQAEYEKNKEKY 264
              A L   +   K+   +PE   + I Y    + +  +  ++I+  +LQ  ++      
Sbjct: 144 SREAWLKTLY---KERGISPEQYARDIIYPTLALRKLAEPLVQITPKDLQIAFDATYG-- 198

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
              +      ++    + A E +Q LK     F ++A E+   L+  SLG    E I   
Sbjct: 199 ---DKLRCRMIMVDKLRVAQEIWQELKANPGGFEKIAMERSMDLNTRSLGGLIAEPISRH 255

Query: 324 SLAD----SIFS--------------LAKKGDFTPVIH-GSFGYVIAHVSNIKPSFTVSF 364
           +  +    + F+                K GD T  I      ++I     + P+     
Sbjct: 256 AAPETVSAAAFAQLVDGNPNDKDPSHKPKDGDITGPIQVSETSWIILKREAVIPAQAKDP 315

Query: 365 QE--VKKDIANQMRITKASEKVKEDYK------RLEEFLALGTSMDEISRREKIVSIDLP 416
            +  +   +   +R TK  EK+ E +       ++E  L     M      +    +D  
Sbjct: 316 NDPAIAAQLEELVRDTKIKEKMGEVFNALMKRAQIENRLTGHIKMAN-EDPDPATGVDAA 374

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
           +   +  D +           + +      D P ++   + LP             P   
Sbjct: 375 IRRASNNDQEQSAPPQTAPAPKTITPPPVADGPGAQSPKLKLPV-------PAGVTPEMI 427

Query: 477 RKLEEVLTDVKKDWKTVK 494
           R+ E +   ++K+ ++VK
Sbjct: 428 RERERLREQIRKEAQSVK 445


>gi|294618799|ref|ZP_06698326.1| foldase protein PrsA [Enterococcus faecium E1679]
 gi|291594987|gb|EFF26337.1| foldase protein PrsA [Enterococcus faecium E1679]
          Length = 336

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 87/270 (32%), Gaps = 32/270 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +  D+  M  G +  S+   +   +   ++     I+    +       ++  +   ++K
Sbjct: 26  TNKDIATMKGGTITVSDFYDEAKLKSSNQSLVQRMIIYKVFNNKYGDKVTDKQVDAEYDK 85

Query: 220 YKDN-------------YRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              +             Y    YK  I   L      +  ++I++D+L+  ++       
Sbjct: 86  QAKSLGDTFESQLEAAGYTKDTYKEYIRNNLAFEAGLKAHVDITDDDLKTAWKSFHP--- 142

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIP 321
                  + +   ++ EA +  +S   G  F +LA+++         G   K        
Sbjct: 143 ---EVEAQIIKLSSEDEAKDVKKSADDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTI 199

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSF------GYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              + ++ F L K G+ + VI  +        Y +  +   +        + K  + +  
Sbjct: 200 PAEVKEAAFKL-KDGEISDVITTTNPTSYATEYYVVKMVKNQNKGN-DMDKYKDQLKDIA 257

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEIS 405
             TK S+         EE       + + +
Sbjct: 258 TETKLSDNAFTTKVIGEELKDANVKIKDDA 287


>gi|110589212|gb|ABG77115.1| peptidyl-prolyl cis-trans isomerase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 241

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 79/271 (29%), Gaps = 70/271 (25%)

Query: 93  LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
           L++     Q    +G+  D   +   IA       ++N  S +     L  +GIN   + 
Sbjct: 1   LITNQLQLQTATRLGITVDDATLSRTIASI----ARNNNISLNRLRETLESDGINFTHFR 56

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
           +   + +    +                       +   V+ IV+           +   
Sbjct: 57  EKLRREIIINRL----------------------RQKEVVNRIVI-----------TEQD 83

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
           +     +   + R      I +IL    E     ++                        
Sbjct: 84  VRSHMAREAGSSRQRAAFHIQHILIATPEGAAPEDVQ----------------------- 120

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSI 329
                  + +A++    L++G  F   A    +  ++L    LG      +P  S+   +
Sbjct: 121 -----AARGKAEQLVLELREGADFSSTAIRESDGRQALEGGDLGWIEAARVP--SIFTHL 173

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
               + GD +  +  + G+ I  +  ++ + 
Sbjct: 174 MDQLEPGDISDPVRNASGFHIIKLVEVRGAK 204


>gi|213962588|ref|ZP_03390850.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           sputigena Capno]
 gi|213954914|gb|EEB66234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           sputigena Capno]
          Length = 451

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/402 (9%), Positives = 106/402 (26%), Gaps = 95/402 (23%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           KI+ +++ + F     +              VG   +  S    ++              
Sbjct: 5   KIWSILVMLLFTTPFFAQNNERKKVDGVAAVVGDYLILESDIDKAY------------ID 52

Query: 75  VNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
           +  +   +  +++ ++L  L+             ++     V  ++ +   F        
Sbjct: 53  LQQQEVDTREINRCQMLGKLMEDKLYAHQAVQDSVKLTDSEVRDQVNQRIEFLTAQLGGD 112

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
               +          K+        L     V M    M+                    
Sbjct: 113 IKKLLQFYK------KDDEQSMRDELFNLLKVSMLAQRMK-------------------- 146

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
                 + +    + +   +  +F     +    E       L         +      +
Sbjct: 147 ------QQIIKDVEVTPEEIRTFFNAIPAD----ERPHFGTELEIAQIVVNPVA-PKSSV 195

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-LSDISL 312
           Q   ++                +   +K+ +E       G  F   A    +   +   +
Sbjct: 196 QKVIDQ----------------LNDIKKDVEE------NGMSFSTKAILYSQDRATGGQV 233

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT----------- 361
            +F++    D +  D  F+L ++G+ +     SFG+ I  +  I+               
Sbjct: 234 LTFNRNSAFDKAFKDVAFTL-QEGEISKPFESSFGWHIIQMDKIRGKEVSVRHILLMPDI 292

Query: 362 --VSFQEVKKDIA--------NQMRITKASEKVKEDYKRLEE 393
              +  E K+ I+         ++   +A+    ++ +   +
Sbjct: 293 PEEALNEAKEKISKIRERIINKELTFDEAARNFSDEKETRND 334


>gi|300811432|ref|ZP_07091927.1| putative foldase protein PrsA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497590|gb|EFK32617.1| putative foldase protein PrsA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 307

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 17/190 (8%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
             S+  +   + KYK  Y +     +SY        ++ +  +N    A  +  K+   +
Sbjct: 74  KVSSKKINAEYNKYKKQYGSNFSTVLSYSGLTTKSFKQNLA-TNLYSVAALKDLKKPTTT 132

Query: 267 PEIR---------TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL----- 312
            E           TV+ +V   +  A+   + LK G  F  LA++     +         
Sbjct: 133 QEKNWWKSYHTKTTVQHIVVDKKSTAETVIKKLKSGTSFATLAKKYSTDTATKKKAGKMA 192

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              S +     +   +++ L +    T  +  S GY +  V         S+ + K  I 
Sbjct: 193 AFDSTDTNLSSTFKSAVWKLKEGEYTTTPVKTSSGYEVIKVLKTTEKG--SYTKNKSFID 250

Query: 373 NQMRITKASE 382
            Q+    A++
Sbjct: 251 KQLYAKWAAD 260


>gi|118579009|ref|YP_900259.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
 gi|118501719|gb|ABK98201.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
          Length = 243

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 36/125 (28%), Gaps = 12/125 (9%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++   +    +    ++ G  F  +A  +    S      LG+F+   +       
Sbjct: 4   TARHILVDTEDLCLKLKTEIEAGADFADVARRESSCPSRQQGGDLGTFNPGQMV-PEFDH 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI-------KPSFTVSFQEVKKDIANQMRITKA 380
           ++F+  +       +   FGY +  V+               +       +   +   KA
Sbjct: 63  AVFT-GEVNKLLGPVQTQFGYHLIEVTRRWEEAAAEASPAENALDRALAALHQDVNDPKA 121

Query: 381 SEKVK 385
                
Sbjct: 122 QSAFY 126


>gi|320038240|gb|EFW20176.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 124

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA   L+ G KF ++A E  +  +    SLG   +  + D +   + 
Sbjct: 35  VRHILCEKHSKKEEALAKLRAGAKFDEVAREFSEDKARQGGSLGWKIRGSL-DAAFEKAA 93

Query: 330 FSLAKKGDFTPVI---HGSFGYVIAHVSNIK 357
           + L      +P        FGY I  V   K
Sbjct: 94  YDLEPSTTASPKYAEVKTGFGYHIIMVEGRK 124


>gi|319649925|ref|ZP_08004075.1| hypothetical protein HMPREF1013_00680 [Bacillus sp. 2_A_57_CT2]
 gi|317398363|gb|EFV79051.1| hypothetical protein HMPREF1013_00680 [Bacillus sp. 2_A_57_CT2]
          Length = 254

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 9/153 (5%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
               TV  V  Q++    + +       M  Q        + A    + ++ LD+LV   
Sbjct: 62  DEEKTVAIVNDQEILGREYNSVLTSSQMMYQQMGQDPTTKDAADK--IKEQTLDSLVGQT 119

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGINEKEYIDHYT 156
            L Q  +  G +A    V  ++  +        +F  D  F + + + G+N         
Sbjct: 120 LLLQEADKKGYKASDEEVKKQLEETK------GQFKDDKEFETAMKQAGLNPDSLEKEIA 173

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
             +  T  +   +     ++  + +    Y   
Sbjct: 174 NNIKYTKYINGEIKPGEVTDAEIQKFYDEYASQ 206


>gi|149042165|gb|EDL95872.1| rCG36372, isoform CRA_b [Rattus norvegicus]
          Length = 80

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSIFSLAKKGD----- 337
           EA + LK G +F ++A +  +  +     LG  ++  +      ++ F+L   G      
Sbjct: 2   EAMEKLKSGMRFSEVATQYSEDKARQGGDLGWMTRGSMVGP-FQEAAFALPVSGMDKPVF 60

Query: 338 FTPVIHGSFGYVIAHVSNIK 357
             P +   FGY I  V   K
Sbjct: 61  TDPPVKTKFGYHIIMVEGRK 80


>gi|157110825|ref|XP_001651262.1| peptidyl-prolyl cis/trans isomerase, putative [Aedes aegypti]
 gi|108883863|gb|EAT48088.1| peptidyl-prolyl cis/trans isomerase, putative [Aedes aegypti]
          Length = 135

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK+G+ F  +A    +  +     LG   +  +      D+
Sbjct: 43  KVRHILCEKQGKILEALEKLKEGQSFNVVATNYSEDKARQGGDLGWQIRGAMVGP-FQDA 101

Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
            F+L            P I   FGY I  V   K
Sbjct: 102 AFALPISTINAPKYTDPPIKTKFGYHIIMVEGKK 135


>gi|86749346|ref|YP_485842.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris HaA2]
 gi|86572374|gb|ABD06931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris HaA2]
          Length = 350

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 15/176 (8%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E   +   L  V    ++   S D+LQ  Y+ N+     P    + Q+     K+AD+A 
Sbjct: 153 ESAAVELYLQTVSTPPERFP-SEDDLQRVYDANRAALLMPRQFELAQIFVALPKDADKAA 211

Query: 288 QSLKKG--KKFIQLAEEQGKS----------LSDISLGSFSKEYIPDVSLADSIFSLAKK 335
           +   K   +   +  +  G             +  +LG  ++  I    +   +  L+K 
Sbjct: 212 EDKAKKSVEDIQRKLKAPGVDFAAVAAEAGNANGGALGWVAESQI-RPEIRAKVMELSKN 270

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              +  I    G+    V + K  +T +  EV+  +  Q+R  +A+   +     L
Sbjct: 271 -AVSDPIKLDDGWHFVKVLDTKAPYTRTLPEVRDGLIAQIRTERAAALRRAYLAEL 325


>gi|170055273|ref|XP_001863510.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Culex
           quinquefasciatus]
 gi|167875254|gb|EDS38637.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Culex
           quinquefasciatus]
          Length = 135

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 16/98 (16%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLADS 328
            V  ++   Q +  EA + LK+G+ F  +A    +        LG   +  +      D+
Sbjct: 43  KVRHILCEKQSKILEAMEKLKEGQPFNVVATAYSEDKATKGGDLGWQPRGAMVGP-FQDA 101

Query: 329 IFSLAKKGDFT---------PVIHGSFGYVIAHVSNIK 357
            F L      +         P I   FGY I  V   K
Sbjct: 102 AFELP----ISTIGTPRYTDPPIKTKFGYHIIMVEGKK 135


>gi|171060582|ref|YP_001792931.1| SurA domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170778027|gb|ACB36166.1| SurA domain [Leptothrix cholodnii SP-6]
          Length = 464

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/437 (14%), Positives = 126/437 (28%), Gaps = 74/437 (16%)

Query: 3   EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
           ++IR  S   V+ + L +        G +      +    V  V R+ V  S      ++
Sbjct: 30  QLIR-HSPLVVSLLMLGLAPAS----GSAQEGSRQNADYIVAVVNRELVTNSEVQQRVER 84

Query: 63  ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
            L   + +    V S  A    L + +LD L+          + GL  D   +   +A  
Sbjct: 85  -LEQEAARANAQVPSRDA----LQRDVLDQLIDERAQLGVARESGLRIDDAELDRTVASV 139

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
                  N+ +      RL  +G++   + D+    L    +    V       ++    
Sbjct: 140 AA----QNQLTVAEMRERLRADGLDYPRFRDNLRDRLLLERLREREVQARL--RIVDADI 193

Query: 183 KRFYFENRSVDYIV--LNNR----HVPAIADPSNA------------------------- 211
           + +  + R         N       VP  A+ ++                          
Sbjct: 194 ENWLVQQREKSGASNEFNIAQILIAVPENANVADTAARRAVAVNVLQRLRAGEDFGKLVL 253

Query: 212 VLTQWFEKYKDNY------RAPEYKRISYILFDVHEKEKKIEISND--ELQAEYEKNKEK 263
            L+   +              P+    +       E   ++  S     +    E+    
Sbjct: 254 ELSDASKANGGELGLRRGDALPDLFVEAVQPLLAGEVAPQVVRSGAGFHVLKLIERKDAT 313

Query: 264 YFSPEIRTVEQLVFPNQKEADE-AFQSLKKG--------KKFIQLAE---EQGKSLSDIS 311
              P+ R    L+ P    + E     L +          +F +LA    E G +     
Sbjct: 314 LSIPQTRARHILLRPGPGLSQETVIARLAEFRQRILGGRARFEELARQFSEDGSAAGGGD 373

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ--EVKK 369
           LG  +           ++  L + G  +  +   FG  +  +   +    VS    + ++
Sbjct: 374 LGWAAPGQFV-PEFEQAMQDL-QPGGLSAPVVSRFGVHLIQLIERR---QVSLDVRQQRE 428

Query: 370 DIANQMRITKASEKVKE 386
              N +R  K  E   E
Sbjct: 429 VARNALREQKYEETYLE 445


>gi|157963035|ref|YP_001503069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
           ATCC 700345]
 gi|167625206|ref|YP_001675500.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
 gi|157848035|gb|ABV88534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
           ATCC 700345]
 gi|167355228|gb|ABZ77841.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
          Length = 92

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  +Q  A++  + L KG KF  LA++     S     SLG F K  +         F
Sbjct: 9   HILVKHQTLAEDIIKQLNKGAKFDVLAKKHSTCPSGKKGGSLGEFKKGQMV-PQFDKVCF 67

Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353
                G+          FG+ +  V
Sbjct: 68  ----TGELITPHLVKTKFGWHVIKV 88


>gi|116326589|ref|YP_796510.1| peptidylprolyl isomerase [Lactococcus lactis subsp. cremoris SK11]
 gi|122064922|sp|Q02VE3|PRSA_LACLS RecName: Full=Foldase protein prsA; AltName: Full=Protease
           maturation protein prtM; Flags: Precursor
 gi|47198|emb|CAA32349.1| unnamed protein product [Lactococcus lactis subsp. cremoris]
 gi|76574943|gb|ABA47412.1| peptidyl-prolyl isomerase, maturation protein [Lactococcus lactis]
 gi|116108957|gb|ABJ74079.1| Parvulin-like peptidyl-prolyl isomerase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 299

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 26/187 (13%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             S   +   ++ YK  Y              R+   + +          +K  ++S  +
Sbjct: 76  SVSTKTVNDAYDSYKQQYGENFDAFLSQNGFSRSSFKESLRTNFLSEVALKKLKKVSESQ 135

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+A ++  + K       TV+ ++  ++  A +    L  GK F  LA+      +    
Sbjct: 136 LKAAWKTYQPK------VTVQHILTSDEDTAKQVISDLAAGKDFAMLAKTDSIDTATKDN 189

Query: 313 GSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
           G            D +  D+ + L         +  + GY +  +  I      +F   K
Sbjct: 190 GGKISFELNNKTLDATFKDAAYKLKNGDYTQTPVKVTDGYEVIKM--INHPAKGTFTSSK 247

Query: 369 KDIANQM 375
           K +   +
Sbjct: 248 KALTASV 254


>gi|261378345|ref|ZP_05982918.1| conserved hypothetical protein [Neisseria cinerea ATCC 14685]
 gi|269145451|gb|EEZ71869.1| conserved hypothetical protein [Neisseria cinerea ATCC 14685]
          Length = 288

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 91/255 (35%), Gaps = 23/255 (9%)

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
             +    ++      +    +     + ++  + KR   +          +         
Sbjct: 41  AAFRAENSRAEDSPRLRQALLKNEVVNTVVAQEVKRLKLDQ---------SAEFKDTLAK 91

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVH---EKEKKIEISNDELQAEYEKNKEKYF 265
            +A   +  +  K +++   +  + Y L          K   +S  + +A Y+     Y 
Sbjct: 92  LHAEAKKSGDDKKPSFKTV-WSAVEYELNGRAYALHIAKTQPVSEQDAKAAYDNISGFYK 150

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
             +   + +++   +  A +A   LK  K F  + ++   +      G+   EY+P  +L
Sbjct: 151 GTQEVQLGEVLTDKEDNAKKAVADLKAKKGFDAVLKQYSLNDRAKQTGA-PDEYVPLKNL 209

Query: 326 ADSIFSL------AKKGDFTPV--IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
                 L       KKG+FT V   +G F Y + +V++ +     SF E+K+ IA  ++ 
Sbjct: 210 EQDALPLYQAVKDLKKGEFTAVPLKNGDF-YGVYYVNDRRNVKVPSFDELKEQIAGDLQA 268

Query: 378 TKASEKVKEDYKRLE 392
            +    V     + +
Sbjct: 269 ERIDRAVGALLNKAD 283


>gi|122064921|sp|P0C2B5|PRSA_LACLC RecName: Full=Foldase protein prsA; AltName: Full=Protease
           maturation protein prtM; Flags: Precursor
 gi|432402|gb|AAA03532.1| maturation protein [Lactococcus lactis]
 gi|623055|gb|AAA60395.1| proteinase activation protein [Lactococcus lactis]
          Length = 299

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 26/187 (13%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             S   +   ++ YK  Y              R+   + +          +K  ++S  +
Sbjct: 76  SVSTKTVNDAYDSYKQQYGENFDAFLSQNGFSRSSFKESLRTNFLSEVALKKLKKVSESQ 135

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+A ++  + K       TV+ ++  ++  A +    L  GK F  LA+      +    
Sbjct: 136 LKAAWKTYQPK------VTVQHILTSDEDTAKQVISDLAAGKDFAMLAKTDSIDTATKDN 189

Query: 313 GSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
           G            D +  D+ + L         +  + GY +  +  I      +F   K
Sbjct: 190 GGKISFELNNKTLDATFKDAAYKLKNGDYTQTPVKVTDGYEVIKM--INHPAKGTFTSSK 247

Query: 369 KDIANQM 375
           K +   +
Sbjct: 248 KALTASV 254


>gi|150388633|ref|YP_001318682.1| hypothetical protein Amet_0798 [Alkaliphilus metalliredigens QYMF]
 gi|149948495|gb|ABR47023.1| hypothetical protein Amet_0798 [Alkaliphilus metalliredigens QYMF]
          Length = 233

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 68/214 (31%), Gaps = 7/214 (3%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           I + ++ +  +         S      V +V    +    F N+ ++      Q+     
Sbjct: 10  IVVGLIALLVIGCASEGENLSQDQGEVVATVNGASITREVFENTVERTKLNYQQQGIEFE 69

Query: 76  NSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
             E    +  + ++ L++L+    L Q  ++ G +     +  E+        K    S 
Sbjct: 70  GEEGEAMLVQVREQALNSLLQEEVLLQEAKEKGYDVSEEAIETELESM-----KGQFESE 124

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK-RFYFENRSVD 193
           + F + L      E +  +     ++    +   +     S+    +   ++  + + + 
Sbjct: 125 EEFEAALEFNQFTEDDLRNMLASEMAIEQFLQNELEEAPASDEEAQELYDQYAAQMKEIA 184

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
                   +PA  +    +  Q  ++ +    A 
Sbjct: 185 EETGETEEMPAFEEVKEQLKMQIAQENQQELMAQ 218


>gi|262067517|ref|ZP_06027129.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291378780|gb|EFE86298.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 219

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 79/181 (43%), Gaps = 8/181 (4%)

Query: 228 EYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           E   I Y L  +  +  +  +I ++ L+  Y++NKE Y  PE   ++ +    Q++A+E 
Sbjct: 33  ESLFIRYFLEREAAKVVEDTKIEDEVLKKIYDENKEFYTFPEKVKLDTIFVKEQEKAEEL 92

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIFSLAKKGD-FTPV 341
            + +     F ++ +E+    +DI+  +    +I       ++A+ +    KK    + +
Sbjct: 93  LKEVTI-DNFNEI-KEKNDEKTDINQKNVDDNFIFITDIHPAIAEELLKENKKSAIISNL 150

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
           +    G+ I ++ + + S   +F+E K+ I N ++     +   +    +        S 
Sbjct: 151 VPVQEGFHIVYLKDKEDSRQATFEEAKETILNDVKRNLFGQVYNQIIADIANEKVTLESN 210

Query: 402 D 402
           +
Sbjct: 211 E 211


>gi|262274058|ref|ZP_06051870.1| peptidyl-prolyl cis-trans isomerase PpiC [Grimontia hollisae CIP
           101886]
 gi|262221868|gb|EEY73181.1| peptidyl-prolyl cis-trans isomerase PpiC [Grimontia hollisae CIP
           101886]
          Length = 92

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  +Q +A++    LKKG KF  LA++     S      LG F +  +       
Sbjct: 6   HALHILVKHQNQAEDLVSQLKKGAKFQTLAKKYSLCPSGKKGGDLGEFRRGQMV-PQFDK 64

Query: 328 SIFSLAKKGDFTPVI--HGSFGYVIAHV 353
             F+     +          FG+ +  V
Sbjct: 65  VCFNA----EILTPHIVKTKFGWHVVKV 88


>gi|315635080|ref|ZP_07890360.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC
           33393]
 gi|315476201|gb|EFU66953.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC
           33393]
          Length = 307

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/379 (10%), Positives = 110/379 (29%), Gaps = 91/379 (24%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +F+ + F+ F+         + +    V +V    V  S   ++  ++            
Sbjct: 7   LFVALGFLAFI-------ANAQAEEKVVATVNGVPVLESQVKSALTKKSNR--------- 50

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
                      +  LD ++    + Q +++ G+  ++ +V   I          N  +  
Sbjct: 51  -----------QAALDKVIDDILVAQAVKESGVSVNNAQVDQIIEGIAA----QNGLTFG 95

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDY 194
             +  L  +GI+   Y     + L  ++V        +  S   ++   +          
Sbjct: 96  QLLDALDYQGISYAAYRQQIAQQLMMSEVRNRAISQSVDVSREQVEALAKKMLAE----- 150

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
                +    +A  ++                     + +IL  ++         + + +
Sbjct: 151 ----AKAKGNVAKLTDT-----------------QYEVRHILLKLNPLLN-----DAQAK 184

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
           A+ E+ +                            L     F   A +  K     + G 
Sbjct: 185 AQLEQIR-------------------------ADILAGKTTFADAALKYSKDYLSGANGG 219

Query: 315 FSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                 P++ +   +      K+G  +      FG+ I  V+N + +   +    ++   
Sbjct: 220 SLGYAFPEMYVGPFNKAVRTTKQGVISAPFKTEFGWHILEVTNTRQA-DRTEDAYRQKAY 278

Query: 373 NQMRITKASEKVKEDYKRL 391
            Q+   +  +  ++  + L
Sbjct: 279 EQIVNQQLQDSARDWVQAL 297



 Score = 37.7 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 84/268 (31%), Gaps = 16/268 (5%)

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
            +VK  +  +     A +KV +D    +     G S++     + I  I        G+ 
Sbjct: 38  SQVKSALTKKSNRQAALDKVIDDILVAQAVKESGVSVNNAQVDQIIEGIAAQNGLTFGQL 97

Query: 425 VKG------------KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
           +              +++A      ++  R   +   +S++   AL        + K ++
Sbjct: 98  LDALDYQGISYAAYRQQIAQQLMMSEVRNRAISQSVDVSREQVEALAKKMLAEAKAKGNV 157

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
                   EV   +      +    +  ++  Q+  +       F D         L+  
Sbjct: 158 AKLTDTQYEVRH-ILLKLNPLLNDAQAKAQLEQIRADILAGKTTFADAALKYSKDYLSGA 216

Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
               +            ++      + V   P +    + + +VTN++     E      
Sbjct: 217 NGGSLGYAFPEMYVGPFNKAVRTTKQGVISAPFKTEFGWHILEVTNTRQADRTEDAYRQK 276

Query: 593 YLTQMMNKDLLDS---VIAYLKSQYSVT 617
              Q++N+ L DS    +  L+ + ++ 
Sbjct: 277 AYEQIVNQQLQDSARDWVQALRKRANIK 304


>gi|293391019|ref|ZP_06635353.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951553|gb|EFE01672.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 310

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/360 (9%), Positives = 103/360 (28%), Gaps = 85/360 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V +V    +  S   ++                     +     +  L+ ++    +
Sbjct: 26  EKVVATVNGIPILESQVQSAIN-------------------KKTNDRQAALNKVIDDILV 66

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           DQ +++  ++ ++ ++   I          N  +    +  L  +GI+ + Y     + +
Sbjct: 67  DQAVKESDVKVNNAQIDQIIEGIAA----QNGLTFGQLLDALDYQGISYRAYRQQIAQQV 122

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
             ++V        +  S   ++   +   +           +   ++A  S+        
Sbjct: 123 MMSEVRNHAISQSVDVSREQVEALAKKMLDE---------AKAKGSVAQISDT------- 166

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                        + +IL  ++      +                               
Sbjct: 167 ----------QYEVRHILLKLNPLLNDAQ------------------------------- 185

Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA--DSIFSLAKK 335
            + + ++    +  GK  F   A +  K     + G       P++ +   +      K 
Sbjct: 186 AKAQLEQIRADIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPEMYVGPFNQAVRTTKP 245

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G  +      FG+ I  V+N + +   +    ++    Q+   +  +  ++  + L + +
Sbjct: 246 GVISAPFRTEFGWHILEVTNTRQA-DRTEDAYRQKAYEQIVNQQLQDSARDWVQALRKRV 304


>gi|329893793|ref|ZP_08269881.1| hypothetical protein IMCC3088_2019 [gamma proteobacterium IMCC3088]
 gi|328923516|gb|EGG30830.1| hypothetical protein IMCC3088_2019 [gamma proteobacterium IMCC3088]
          Length = 309

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 65/154 (42%), Gaps = 7/154 (4%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQ 303
            +S+ +++  Y  N+ ++++PE  T   + FP ++EAD    + K G   + F Q     
Sbjct: 150 SLSDQDIRDYYSNNQAQFWAPERYTFSHVFFPREREADMRQLAAKLGTEIQDFDQALNYG 209

Query: 304 GKSLSDISLGSFSKEYIP---DVSLADSIFSL-AKKGDFTPVIHGSFGYVIAHVSNIKPS 359
              L        + E +          +  +L  + G++   I  +FG+ +  +  ++  
Sbjct: 210 APFLPGYHFTRQTAEQLARQFGAGFVSNFLALPPRVGEWQSPIASTFGWHLVWLQEVETG 269

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            T+S  E +KDI   ++  +    + +    L +
Sbjct: 270 RTLSLDEAQKDIVATLQRERRDMALSDAKAVLRQ 303


>gi|16125933|ref|NP_420497.1| peptidyl-prolyl cis-trans isomerase family protein [Caulobacter
           crescentus CB15]
 gi|13423099|gb|AAK23665.1| peptidyl-prolyl cis-trans isomerase family protein [Caulobacter
           crescentus CB15]
          Length = 501

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/414 (10%), Positives = 117/414 (28%), Gaps = 91/414 (21%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
             S    V    +     +   +    ++    G     E      ++++ L +L+    
Sbjct: 106 SESVAAVVNDDIISSYDLMQRMR----LLMATSGMQPTQENL--PQIEQEALRSLIDERL 159

Query: 99  LDQFIEDIG------LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
             Q ++ +       + +    V  +I        + N+   +    +L  +GI    + 
Sbjct: 160 QMQELKRVEKQQKITIISTDKEVEEQIGDI----AQSNRLQPEQLKQQLVAQGIGLDTWR 215

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
                                      + + + + + R    + +               
Sbjct: 216 AQLR----------------------AESSWQSWIQGRYGSRLRI-----------GEDQ 242

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
           +  +  +  D    P+Y+     L        ++ ++                       
Sbjct: 243 IKAYQRRLADAAAKPQYQISEVFLDAARVGGMEVAVN----------------------- 279

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSI 329
                     A +    +++G  F  +A +      + +   +G  S+  +P     D+ 
Sbjct: 280 ---------GATQLINQMQQGAPFAAVARQFSGSATAANGGEVGWVSQGEMPTE--VDAA 328

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
               + G  +  I    G  I ++ + +     +  ++K  +A  +       ++    K
Sbjct: 329 LEQLRPGQLSRPIQVKDGVYIIYLRDKRAGSKTAIVDLK-QVAAPLAADATEAQIAAATK 387

Query: 390 RLEEFLALGTSMDEI----SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           +L +     TS   +    ++ + +V+ DL   +        +E A      Q+
Sbjct: 388 QLVDLKPKITSCQSLEATAAKVDGLVAGDLGEAEITDLAPAFQEAANKLEVGQI 441


>gi|297181721|gb|ADI17902.1| parvulin-like peptidyl-prolyl isomerase [uncultured
           Desulfobacterales bacterium HF0200_07G10]
          Length = 299

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 79/243 (32%), Gaps = 29/243 (11%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
                Q+   + ++   A + L  G  F ++        S      LG   +  +   S+
Sbjct: 3   RVRASQIFTHSMEDVVAAKKQLDSGISFEEVVTNFSTCPSKENAGDLGWMPEGNL--QSI 60

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKV 384
                S +  G+    +H  +GY I  +S I+       F         ++ +  A++  
Sbjct: 61  MGQEVSESDIGNVIGPVHSQYGYHILKISEIEVEKIEGPFN-------AELSMESANQIF 113

Query: 385 KEDYKRLEEFLALGTSM------DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
            + +  L +   +G  M      D ++   K    +L  V         ++  +I   E+
Sbjct: 114 PDVHNILFKEFHIGLPMTPYGKNDNLASVCKANGKNLQEVINCLNKEYSEKNISIMTCEE 173

Query: 439 LLFRVFGKDDPLSKD-------HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
           L  ++   + P+  D           +     +  +  E I       E+    V  DWK
Sbjct: 174 LKQKIDCDNKPVLLDIRESWERDISKIEGSHIINSENNEHI---LGTFEKGREIVLIDWK 230

Query: 492 TVK 494
             +
Sbjct: 231 QDR 233


>gi|294622205|ref|ZP_06701265.1| foldase protein PrsA [Enterococcus faecium U0317]
 gi|291598247|gb|EFF29340.1| foldase protein PrsA [Enterococcus faecium U0317]
          Length = 323

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 32/270 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +  D+  M  G +  S+   +       ++     I+    +       ++  +   ++K
Sbjct: 26  TNKDIATMKGGTITVSDFYDEAKLESSNQSLVQRMIIYKVFNNKYGDKVTDKQVDAEYDK 85

Query: 220 YKDN-------------YRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              +             Y    YK  I   L      +  ++I++D+L+  ++       
Sbjct: 86  QAKSLGDTFESQLEAAGYTKDTYKEYIRNNLAFEAGLKAHVDITDDDLKTAWKSFHP--- 142

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIP 321
                  + +   ++ EA +  +S   G  F +LA+++         G   K        
Sbjct: 143 ---EVEAQIIKLSSEDEAKDVKKSADDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTI 199

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSF------GYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              + ++ F L K G+ + VI  +        Y +  +   +        + K  + +  
Sbjct: 200 PAEVKEAAFKL-KDGEISDVITTTNPTSYATEYYVVKMVKNQNKGN-DMDKYKDQLKDIA 257

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEIS 405
             TK S+         EE       + + +
Sbjct: 258 TETKLSDNAFTTKVIGEELKDANVKIKDDA 287


>gi|315500015|ref|YP_004088818.1| ppic-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
           excentricus CB 48]
 gi|315418027|gb|ADU14667.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
           excentricus CB 48]
          Length = 423

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/390 (11%), Positives = 107/390 (27%), Gaps = 52/390 (13%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           G   V  V  + +               +   I   V   +       ++ L  L+    
Sbjct: 40  GEGVVALVNDKLISSYDLKQRM------LLLIITSGVQVTQQNYAAFQQQALRALIDEHL 93

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
                +   L      +  EIA       + +  S D  ++ L R GI  +   D     
Sbjct: 94  QLAEADHFKLNVSDEEIDEEIANM----AQQSGLSKDQLLAELKRAGIEAQTLRDQIKAE 149

Query: 159 LSRTDVVG------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
           ++   +V         VG  +    +    +        V  I+++   V      + A 
Sbjct: 150 IAWGQLVNGRFRPKARVGKDQVDAFMTKLTEDSQKPQYLVAEILIDPE-VAGGQKEAEAG 208

Query: 213 LTQWFEKYKD----------------------------NYRAPEYKRISYILFDVHEKEK 244
             Q F++                               +              +  +  +
Sbjct: 209 AQQLFDQIAQGVAPFQSVARQFSNAPSAANGGDAGWLVSGTIDPKIETVLKGMNPGQMTR 268

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---NQKEADEAFQSLKKGKKFIQLAE 301
            I ++++ +   Y + K++  +     ++Q   P                K      L  
Sbjct: 269 PI-VTDEGVYIYYLREKKEGKADAKVRLKQAAVPLTGGDSAMRALASFRAKYPTCDALNN 327

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF- 360
           E+G     ++   F+         A ++  L K G  T  +  +    + +V +   +  
Sbjct: 328 EKGNGQVSVADLGFTALSDLKPEYASALQPL-KVGQSTEPMKNTMNINVVYVCDKTAAGD 386

Query: 361 -TVSFQEVKKDIANQMRITKASEKVKEDYK 389
              S ++V++ +  Q         +++   
Sbjct: 387 DVPSREQVEQRLTQQKVAMLGRRYLRDIRD 416


>gi|203287511|ref|YP_002222526.1| hypothetical protein BRE_43 [Borrelia recurrentis A1]
 gi|201084731|gb|ACH94305.1| uncharacterized conserved protein [Borrelia recurrentis A1]
          Length = 502

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 87/267 (32%), Gaps = 28/267 (10%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKV------PFSSFINSWK 61
                  L+++   F+I  L   LF  + SS +   G    Q +       F+ ++N + 
Sbjct: 22  GMWGIFALILIVFGFIIAPLMPGLFDTTDSSNL-KFGFYKGQPIYYAKDNKFAQYVNFYS 80

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                + +   + ++        + +      V         +          +   +  
Sbjct: 81  NFYSKLKRDNNYDID------YFIWRLAFMKYVEDIAFLDLAKSSNFYISKSVLSQNVMN 134

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
           SP++   +  FS   +      +    K Y D   + L  +++          S+ LL  
Sbjct: 135 SPVYLDSNGNFSPKRYNKVSDYQKF--KIYSDAV-ENLLSSNIQIFLNSSFVFSDFLLSA 191

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD-VH 240
            K      +++ YI L+    P     S      + E  +  +++ +   IS+      +
Sbjct: 192 VKNMSKIRKNIAYITLSYEDFPKDKVIS------YAEDNQKLFKSLDLVSISFKNLSNAN 245

Query: 241 EKEKKIE--ISNDELQAEYEKNKEKYF 265
           +   K+   +  +E+   Y ++   + 
Sbjct: 246 DAYDKLSKGMPFEEVAKFYSEDVANFK 272


>gi|254295064|ref|YP_003061087.1| hypothetical protein Hbal_2717 [Hirschia baltica ATCC 49814]
 gi|254043595|gb|ACT60390.1| hypothetical protein Hbal_2717 [Hirschia baltica ATCC 49814]
          Length = 263

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 4/151 (2%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-KEADEAFQSLKKGKKFIQLAEEQ 303
               + +E+   Y ++ + Y + +  +V Q+ F ++  + ++    L  G+         
Sbjct: 109 PATPTPEEMLEFYTEHLDYYTTEKFYSVRQVFFEDKPDDIEDKLVKLNAGESVEADTYWI 168

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           G    +  L +    +  D+S   + F     G +        G+ +  V        + 
Sbjct: 169 GDYFPEYGLSALRSIFGNDIS---ASFDGFTDGVWEGPFQTQRGWHLLRVEERFEPKILP 225

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           F EV++ I    + TK +E +    ++L+E 
Sbjct: 226 FSEVQQQIERDYQHTKNAETLDTYIQQLKEK 256


>gi|307190110|gb|EFN74266.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Camponotus
           floridanus]
          Length = 162

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 53/169 (31%), Gaps = 38/169 (22%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK-IEISNDELQAEYEKNKEKYFSPE 268
           +  L   +EK         Y    Y      ++  K  + S++           K   PE
Sbjct: 3   DEELPAGWEKRLSRSTGQHYYLNIYTKESQWDRPDKPADPSDN----------GKADGPE 52

Query: 269 IRTVEQLVFP-----------------NQKEADEA----FQSLKKGK-KFIQLAEEQG-- 304
                 L+                   +++EA E      + +  GK  F +LA +    
Sbjct: 53  EVQCSHLLVKHSGSRRPSSWREENITRSKEEALELVKSYREQIASGKATFAELASKYSDC 112

Query: 305 -KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +     LG FS+  +       + F+L K G+ +  +H   G  I  
Sbjct: 113 SSAKRGGDLGPFSRGAMQKP-FEQAAFTL-KVGELSSPVHTDSGIHIIQ 159


>gi|298243928|ref|ZP_06967735.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ktedonobacter
           racemifer DSM 44963]
 gi|297556982|gb|EFH90846.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ktedonobacter
           racemifer DSM 44963]
          Length = 485

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/379 (11%), Positives = 122/379 (32%), Gaps = 56/379 (14%)

Query: 12  WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           WV    + +  V  +++   +    +    T+ SV  + +P ++F       +  +  ++
Sbjct: 61  WVLATLIALTIVGTVVFSWVNINVIIPN-HTITSVNGENIPLANFRK-----MAALQAQL 114

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
              +NS    +   D     +     T+D   + I        +  +I   P      + 
Sbjct: 115 R--LNSINGLTKQSDSLTKQSSQLQKTIDSTNKQI------DDLNKQIKALPADQKDQH- 165

Query: 132 FSHDVFVSRLAREG-----INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
               +       +        +K+ +D     + +  +       +   + + + +  + 
Sbjct: 166 --DALTKQVTDAQAKVKDTQTKKDTLDAQANNILQNQIPNAKQ--LYTQSQVANDSSDWL 221

Query: 187 FENRSVDYIVLNN-RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
            ++  +     N   +V    +P+   +TQ F  +K +         +       +    
Sbjct: 222 QQDAMIRQWEANQGTNVRTQINPAPNTITQAFNAFKAD--------TASSNGGYSQFLSS 273

Query: 246 IEISNDELQAEY-----EKNKEKYFSPE------IRTVEQLVFPNQKEADEAFQSLKKGK 294
             +S+ ++           N +KY + +            +    Q +A +A   L KG 
Sbjct: 274 DNVSDQDIHDMITIKVRRDNMQKYLAGQYITPAYQVQARGMTLDTQADAQKALDRLHKGD 333

Query: 295 KFIQLAEEQGKSLS----DISLGSFSKEYI-------PDVSLADSIFSLA-KKGDFTPVI 342
            F ++ ++  K ++        G                  + + +F+   K  + +P+I
Sbjct: 334 DFAKVVKDMSKDVNTNTKGGDFGWLVNGQYSLDYAQKVGGVVDNWLFASQRKVNELSPII 393

Query: 343 HGSFGYVIAHVSNIKPSFT 361
             +  + I  ++ I+ S  
Sbjct: 394 SDAGAFHIVQITGIQQSRA 412


>gi|325117413|emb|CBZ52965.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Neospora
           caninum Liverpool]
          Length = 224

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQ---GKSLSDISLGSFSKE 318
            +P  R   Q V  ++++A     +L+     + F QLA +    G       LG F++ 
Sbjct: 22  RNPISRRTNQAVTKSKEQAHADLSALQSSVCQENFAQLANQYSDCGSFQKGGDLGFFTRG 81

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            +      D+ F+L + G+ + ++    G  + +
Sbjct: 82  -MMQKPFEDASFAL-QVGEISDIVDTDSGLHLIY 113


>gi|218128451|ref|ZP_03457255.1| hypothetical protein BACEGG_00019 [Bacteroides eggerthii DSM 20697]
 gi|217989342|gb|EEC55655.1| hypothetical protein BACEGG_00019 [Bacteroides eggerthii DSM 20697]
          Length = 557

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/412 (13%), Positives = 108/412 (26%), Gaps = 47/412 (11%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEAFQSLKKGKKFIQLAEEQGKS- 306
           +   +  Y++ K  +   ++R V  +    P     D    ++ +     +   +     
Sbjct: 149 DAAARRWYDRMKAHHRGGQVR-VRHIFKYLPQNVSGDALRDAVARMDSIYEYLRKNPGDN 207

Query: 307 --------LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
                    SD     +       V   D  F L   G  +       G  I  V   + 
Sbjct: 208 AFDACVERFSDDKRSLWVSWLQMPVEFEDVAFELP-VGGVSQSFFTPQGIHIVKVLERRE 266

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
                F++VK +I  +    +A   V+   ++L++          +            L 
Sbjct: 267 --LPPFEKVKDEIMARQSRHEADRGVEVQVEKLKKEYRYTPDKAGMDELTNSGHTSRTLF 324

Query: 419 DFAGKDVKGKE----VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
             AG+   G +     AA P   +     F     L  ++T        +   ++     
Sbjct: 325 TLAGRSYTGTDFARFAAAYPADVRKQLDAFIMKTVLDYENTCLEQKYPDLRCLVQNYKEQ 384

Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKA-------NQLVLEYSKEGKNFRDIGKNL--- 524
                      + K+ +     +E   KA       +    E    G     + K +   
Sbjct: 385 ALL-----KKIIDKEIRKRAATDEAGLKAYFEKHRSDYQWEERRYRGIVLHGVSKRVVKQ 439

Query: 525 ------GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVF 574
                            R+             Q    P +        F  ++    V F
Sbjct: 440 ARKFLKSLPEEEWKDAIRLTFNAGAQPQIQAEQGVFAPGDNAYVDDLVFKGKDATPLVSF 499

Query: 575 KVTNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
             T     KV    +  +    L       L    +  L+S   V ++  ++
Sbjct: 500 PFTAVLGKKVKGPDDYQEVKDRLVADYQTYLDGRWVDRLRSSAKVEINQEVL 551


>gi|296313595|ref|ZP_06863536.1| hypothetical protein NEIPOLOT_00406 [Neisseria polysaccharea ATCC
           43768]
 gi|296839829|gb|EFH23767.1| hypothetical protein NEIPOLOT_00406 [Neisseria polysaccharea ATCC
           43768]
          Length = 288

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 87/255 (34%), Gaps = 23/255 (9%)

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
             +    ++      +    +     + ++  + KR   +          +     +   
Sbjct: 41  AAFRAENSRAEDSPQLRRALLNQEITNTVVAQEVKRLKLDR---------SAEFKDMLAK 91

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVH---EKEKKIEISNDELQAEYEKNKEKYF 265
             A   +  +  K +++      + Y L          K   +S  + +A Y+     Y 
Sbjct: 92  LRAEAEKSGDDKKPSFKTVWQ-AVEYGLNGRAYALHIAKTQPVSEQDAKAAYDNISGFYK 150

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
             +   + +++   ++ A +A   LK  K F  + ++   +      G     Y+P   L
Sbjct: 151 GTQEVQLGEILTDKEENAKKAVAGLKAKKGFDAVLKQYSLNDHTKQTGK-PDGYVPLKDL 209

Query: 326 AD------SIFSLAKKGDF--TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
                         KKG+F  TP+ +G F Y + +V++ +     SF E+K+ +   ++ 
Sbjct: 210 EQGVPPLYQAIKDLKKGEFTATPLKNGDF-YGVYYVNDRRDVKVPSFDEMKEQLTGDLQA 268

Query: 378 TKASEKVKEDYKRLE 392
            +    V     + +
Sbjct: 269 ERIDRAVGALLDKAD 283


>gi|170736613|ref|YP_001777873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
 gi|169818801|gb|ACA93383.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
          Length = 278

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 72/234 (30%), Gaps = 11/234 (4%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD-NYR 225
             V  M  +   +D       +  +        R +        A     +    +    
Sbjct: 39  AVVNNMPIAQSDVDAIVSASGQADTPALRDAVKRDLIVRQLVEQAADKANYGSRPEVQGI 98

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
               +  +     + +      +++ +++A Y+         E R  E +   +  +A+ 
Sbjct: 99  VSRARANAAADLYLRDALGAQRVTDAQVKAHYDYIVANAAQFEYR-AEVVAVADPAKANA 157

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGS--------FSKEYIPDVSLADSIFSLAKKGD 337
           A   LK+G  F  +A++   + +                +     + LA ++ SL K G 
Sbjct: 158 AAAELKQGAAFDTVAKKYNTTANGGVAEWSELKTPLAEGRTGGLPMPLAQAMTSL-KPGA 216

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            +  I     Y    + + +P    SF + K  +  Q+        +     +L
Sbjct: 217 VSGPIRIGNAYAFVKLDDKRPVVVPSFDKAKGVLRQQLEQQARQSAMTALVDKL 270


>gi|28378171|ref|NP_785063.1| peptidylprolyl isomerase [Lactobacillus plantarum WCFS1]
 gi|254556379|ref|YP_003062796.1| peptidylprolyl isomerase [Lactobacillus plantarum JDM1]
 gi|300767131|ref|ZP_07077043.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180351|ref|YP_003924479.1| peptidylprolyl isomerase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|46396873|sp|Q88X05|PRSA1_LACPL RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|28271006|emb|CAD63911.1| peptidylprolyl isomerase [Lactobacillus plantarum WCFS1]
 gi|254045306|gb|ACT62099.1| peptidylprolyl isomerase [Lactobacillus plantarum JDM1]
 gi|300494950|gb|EFK30106.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308045842|gb|ADN98385.1| peptidylprolyl isomerase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 298

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 78/250 (31%), Gaps = 38/250 (15%)

Query: 146 INEKEYIDHYT-----KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           I E +Y          K + +  ++   +     S +   Q  + Y       Y      
Sbjct: 33  ITESQYYSSMKGTSSGKQVLQQMILNKVLEKDYGSKVSTKQVTKQYN-----TYKSQYGS 87

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
               +   +      + E+ + N    E  +             K++I++  L+ +++  
Sbjct: 88  SFSTVLSQNGLTTKTFKEQLRSNLLLKEAVK------------DKVKITDKALKKQWKSY 135

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKSL----SDISLG 313
           + K       TV+ ++      AD+   +LKK      F +LA++             L 
Sbjct: 136 EPK------VTVQHILVAKSATADKVLDALKKDSSQANFTKLAKKYSTDTTTKNDGGKLS 189

Query: 314 SFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           +F             + F L      T  +  S GY I  +  IK        +   D+ 
Sbjct: 190 AFDNTNTSYSSKFLTAAFKLKNGEYTTSAVKTSNGYEIIRM--IKNPGKGKMSDHTADLK 247

Query: 373 NQMRITKASE 382
            Q+     S+
Sbjct: 248 KQIWDNDMSD 257



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 64/197 (32%), Gaps = 43/197 (21%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           + W+  I L  + + F + G         GS TV S    K+  S +           S 
Sbjct: 2   KKWL--IALAGVLLTFTLAGC--------GSKTVASTSGGKITESQY----------YSS 41

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
             G              K++L  ++    L+   +D G +    +V     +   +  + 
Sbjct: 42  MKGTSSG----------KQVLQQMILNKVLE---KDYGSKVSTKQVTK---QYNTYKSQY 85

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
                  F + L++ G+  K + +     L    +       ++ ++  L +  + Y   
Sbjct: 86  GS----SFSTVLSQNGLTTKTFKEQLRSNLL---LKEAVKDKVKITDKALKKQWKSYEPK 138

Query: 190 RSVDYIVLNNRHVPAIA 206
            +V +I++         
Sbjct: 139 VTVQHILVAKSATADKV 155


>gi|295132738|ref|YP_003583414.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zunongwangia
           profunda SM-A87]
 gi|294980753|gb|ADF51218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zunongwangia
           profunda SM-A87]
          Length = 467

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/401 (13%), Positives = 130/401 (32%), Gaps = 52/401 (12%)

Query: 133 SHDVFVSRLAREGINEKEYID-HYTKMLSRTDVV--GMFVGGMRPSNLLLDQAKRFYFEN 189
             D+    +  +G +     D      L    +         +   +  ++         
Sbjct: 62  DIDLTRKDIQSQGNSTANVTDCQLAGSLMENKLYAHQAIQDSIIVPDAQINNYIDQQIAG 121

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
                  + +       D       + F+  K +  A + ++         +  + IE++
Sbjct: 122 MVRQLGSIEDVLEFYKRDSEAEFRNELFDLNKQSQLAQKMRQ---------KIIENIEVT 172

Query: 250 NDELQAEYEKNKEKYFS--PEIRTVEQLVFPNQKEADEAFQS-----------LKKGKKF 296
            +E++A + +  +       +   + ++V   +   +E  ++           L+ G KF
Sbjct: 173 PEEVRAYFNEIPKDSLPVFGDEVEISEIVVKPEVPEEEKQKTIDRLNQFREDVLENGSKF 232

Query: 297 IQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              A        +  ++ S  ++        D  FSL + G+ +     ++GY I  +  
Sbjct: 233 ATKAILYSDDTQTGGNILSLGRKDAFVKEFKDVAFSLRE-GEISEPFETTYGYHIIQLVK 291

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
           ++        +V+  +        A EK K++  ++ E +  G    E ++  + VS   
Sbjct: 292 VRGQEI----DVRHILLIPDVNNAAVEKAKKEIDQVREKIVNGE--IEFAQAAREVSDRE 345

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFG-----KDDPLSKDHTVALPDGSYMW--VQI 468
                 GK            ++ L  R++      KD  +S   T     G  ++  V+I
Sbjct: 346 ETKADGGKMRNPTTGDTGFDQKNLPPRLYSQISELKDGEISYRLTEQDEMGRPIFKIVKI 405

Query: 469 KESIPAR------------DRKLEEVLTDVKKDWKTVKTAE 497
            + IP              D  L++      ++W+  K  +
Sbjct: 406 DKRIPQHIADYGTDYMKIKDLALQDKRIKAIQEWQKEKIQD 446


>gi|257125063|ref|YP_003163177.1| hypothetical protein Lebu_0266 [Leptotrichia buccalis C-1013-b]
 gi|257049002|gb|ACV38186.1| hypothetical protein Lebu_0266 [Leptotrichia buccalis C-1013-b]
          Length = 298

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 93/269 (34%), Gaps = 19/269 (7%)

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
           +  + I  Y   ++      ++  G+   +L  DQ      +   +  I LN        
Sbjct: 34  SPDKQIKVYENEVNNELAKSLYSSGVDEKDLTSDQIA--QMKQSIIKNIALNRALAIKGK 91

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           +       ++ E           +++   L  ++E   K ++++ + +  Y+ N   +  
Sbjct: 92  EKKLDQDKKYTES-----TDILQEQLLASLATLNEVNDKAKVTDADAKNIYDANAANFTR 146

Query: 267 PE-IRTVEQLVFPNQKEADE---AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
            E    ++ +VF     A       +++     F   A +   ++  ++    ++E IP 
Sbjct: 147 QEDSVRLQLIVFNTSDSAKANQVLKEAIANPADFTSYARKYNANIQGVTENGETQE-IPL 205

Query: 323 VSLA------DSIFSLAKKGDFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
             L+      +      K G     V+       +  V        + F++VK+ I  Q+
Sbjct: 206 TQLSSRFGPLNEAIKDVKAGQIVNKVVTVGNDLYVVKVLERNGKGLIPFEKVKETIKTQL 265

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEI 404
           R  K   + ++  K + +   L    + +
Sbjct: 266 RNQKRQVEQQKYLKSISDEFKLSNMDEAL 294


>gi|242280654|ref|YP_002992783.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           salexigens DSM 2638]
 gi|242123548|gb|ACS81244.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           salexigens DSM 2638]
          Length = 93

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              L+  +++   +  + ++ G  F ++A++     S      LG F    +        
Sbjct: 6   ARHLLVSDEQTCLDLKKQIQDGADFGEVAKKHSSCPSGQRGGDLGEFRPGQMV-PEFDTV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           +F+ A  G+    +   FGY +  + + +
Sbjct: 65  VFNEA-VGEVHGPVKTQFGYHLLIIDSRE 92


>gi|88803460|ref|ZP_01118986.1| peptidyl-prolyl cis-trans isomerase [Polaribacter irgensii 23-P]
 gi|88781026|gb|EAR12205.1| peptidyl-prolyl cis-trans isomerase [Polaribacter irgensii 23-P]
          Length = 460

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 90/282 (31%), Gaps = 61/282 (21%)

Query: 154 HYTKMLSRTDVVG--MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP--- 208
              + L +  ++     +  +  S+  +          RS+ +       +  +      
Sbjct: 72  EMLEELMQQKLLSHHAVIDSVTVSDAEVSNKV-----ERSIQFFTQEYGSLEKVVSAYGF 126

Query: 209 -SNAVLT-QWFEKYKDN-YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
                L  + +   KDN     E  +I+          +K++++ +E++  +   KE   
Sbjct: 127 NDLEDLKGELYNVQKDNILVEKEQLKIT----------EKVDVTPEEVRLYFNGLKENGE 176

Query: 266 SPE---IRTVEQLV---FPNQKEADEAFQSLKK-------GKKFIQLAEEQGKSLS---D 309
            PE      + Q+V    P   E     + L +       G  F   A    K      D
Sbjct: 177 LPEFTAEIELAQIVLNSVPTDAEELRVLEQLTQIRKEVLEGASFRMKAIINSKDPGVTRD 236

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK------------ 357
             L   +KE        +  FSL +  + +      FGY I  +  IK            
Sbjct: 237 NGLMEVTKESNFIKEFKEVSFSLEQD-EISKPFKTLFGYHIIKLHTIKGNTRTVSHILLQ 295

Query: 358 PSFTVSF--------QEVKKDIAN-QMRITKASEKVKEDYKR 390
           P    S         +E+K+DI   ++   +A +K  +D   
Sbjct: 296 PEIPESRLRETRLKVEEIKRDIQEGKLTFEEAVKKFSDDKDS 337


>gi|297696521|ref|XP_002825436.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Pongo abelii]
          Length = 127

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +    K+     LG  ++  +      ++
Sbjct: 39  KVRHILCEKHGKIMEAMEKLKSGMRFNEVATQYSEYKARQGGDLGWMTRGSMVGP-FQEA 97

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIA 351
            F+L   G        P +   FGY I 
Sbjct: 98  AFTLPISGMDKPVFTDPPVKTKFGYHII 125


>gi|257894185|ref|ZP_05673838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,408]
 gi|257830564|gb|EEV57171.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,408]
          Length = 340

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 32/270 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +  D+  M  G +  S+   +       ++     I+    +       ++  +   ++K
Sbjct: 30  TNKDIATMKGGTITVSDFYDEAKLESSNQSLVQRMIIYKVFNNKYGDKVTDKQVDAEYDK 89

Query: 220 YKDN-------------YRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              +             Y    YK  I   L      +  ++I++D+L+  ++       
Sbjct: 90  QAKSLGDTFESQLEAAGYTKDTYKEYIRNNLAFEAGLKAHVDITDDDLKTAWKSFHP--- 146

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIP 321
                  + +   ++ EA +  +S   G  F +LA+++         G   K        
Sbjct: 147 ---EVEAQIIKLSSEDEAKDVKKSADDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTI 203

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSF------GYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              + ++ F L K G+ + VI  +        Y +  +   +        + K  + +  
Sbjct: 204 PAEVKEAAFKL-KDGEISDVITTTNPTSYATEYYVVKMVKNQNKGN-DMDKYKDQLKDIA 261

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEIS 405
             TK S+         EE       + + +
Sbjct: 262 TETKLSDNAFTTKVIGEELKDANVKIKDDA 291


>gi|289626305|ref|ZP_06459259.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|330867003|gb|EGH01712.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 96

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKSLS---DISLGSFSKEYIP 321
              T   ++  ++++ +E    ++ G     F ++A+      S      LGSF    + 
Sbjct: 2   AKATARHILVSSEEKCNELKAQIEGGADFADFAEIAKANSSCPSSRQGGDLGSFGPGQMV 61

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                  +FS A        +   FGY +  V++ +
Sbjct: 62  K-EFDTVVFS-APVNTVQGPVKTQFGYHLLEVTSRQ 95


>gi|217075350|gb|ACJ86035.1| unknown [Medicago truncatula]
          Length = 144

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA++ L+ G           +F ++A+E  +  S      LG F +
Sbjct: 46  KARHILCEKQGKINEAYKKLQDGWLDNGDKVPPAEFAKVAQEYSECPSGKKGGDLGWFPR 105

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      +  F+    G  +     + GY I      K
Sbjct: 106 GKMAGP-FQEVAFN-TPVGVTSAPFKSTHGYHIILSEGRK 143


>gi|78357053|ref|YP_388502.1| peptidyl-prolyl cis-trans isomerase C [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219458|gb|ABB38807.1| peptidyl-prolyl cis-trans isomerase C [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 93

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++   ++   E  + ++ G+ F  +A E  +  S      LG F K  +      + 
Sbjct: 6   ARHILVNTEEACLELKKRIEAGEAFADIAREHSRCPSGRRGGDLGKFRKGQMV-PEFDEV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +FS          +   FG+ +  ++    
Sbjct: 65  VFS-GDLNVVHGPVRTQFGFHLLEITERSE 93


>gi|23013326|ref|ZP_00053234.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 106

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           E +   + L +G  F Q+A +     S      LG F K  +       + F+L K G+ 
Sbjct: 32  EINNIKEELNQGADFGQMARQYSDCPSGEDGGDLGEFPKGAMV-PEFEVAAFAL-KSGEV 89

Query: 339 TPVIHGSFGYVIAHVSN 355
           + V+   FG+ +   ++
Sbjct: 90  SGVVETPFGFHLIQRTD 106


>gi|313667751|ref|YP_004048035.1| periplasmic hypothetical protein [Neisseria lactamica ST-640]
 gi|313005213|emb|CBN86646.1| putative periplasmic hypothetical protein [Neisseria lactamica
           020-06]
          Length = 288

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 83/241 (34%), Gaps = 23/241 (9%)

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            +    +       ++  + KR   +          +     +     A   +  +  K 
Sbjct: 55  QLRRALLNQEITHTVVAQEVKRLKLDR---------SAEFKDMLAKLRAEAEKSGDDKKP 105

Query: 223 NYRAPEYKRISYILFDVH---EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +++      + Y L          K   +S  + +A Y+     Y   +   + +++   
Sbjct: 106 SFKTVWQ-AVEYGLNGRAYALHIAKTQPVSEQDAKAAYDNISGFYKGTQEVQLGEILTDK 164

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD------SIFSLA 333
           ++ A +A   LK  K F  + ++   +      G     Y+P   L              
Sbjct: 165 EENAKKAVADLKAKKGFDAVLKQYSLNDHTKQTGK-PDGYVPLKDLEQGVPPLYQAVKDL 223

Query: 334 KKGDF--TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           KKG+F  TP+ +G F Y + +V++ +     SF E+K+ +   ++  +    V     + 
Sbjct: 224 KKGEFTATPLKNGDF-YGVYYVNDRREVKVPSFDEMKEQLTGDLQAERIDRAVGALLDKA 282

Query: 392 E 392
           +
Sbjct: 283 D 283


>gi|310779548|ref|YP_003967881.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ilyobacter
           polytropus DSM 2926]
 gi|309748871|gb|ADO83533.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ilyobacter
           polytropus DSM 2926]
          Length = 575

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 70/592 (11%), Positives = 179/592 (30%), Gaps = 119/592 (20%)

Query: 4   IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
            +RK  +  +  +  +  FV  L   +S+    +   S    +  +KV       +    
Sbjct: 5   KLRKNMK-PIIWVITIAFFVSMLTVIVSNIRMGMGNQSYAFKINGEKVETLKVERTMTNL 63

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
            G+  Q  G  ++ E +     +    + ++      Q  + + ++     +  E  +  
Sbjct: 64  SGVYQQYFGANLDKELS-----NLIAFNQVIEKELTMQIAKKLKVKVPKKEINAEYDKI- 117

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-------- 175
                ++    + F   L  +G  +        + L     +        PS        
Sbjct: 118 ----VNSINDKEQFKRMLQIQGYTKTTLKKEIEEGLLLEKTIAAIKEQYIPSEDELKEEY 173

Query: 176 -------------NLLLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAVLTQWFEK- 219
                          +  + +    + + ++    +L+        +  +    ++ E+ 
Sbjct: 174 EENKYGTYLGKTYEEVKPELEAQLKDKKGIEKYSALLHEEKENMKLEAVDEEYVKYLEQP 233

Query: 220 --YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ--- 274
              KD +        +  + ++     ++  + +  +  +E + +       R +     
Sbjct: 234 SLEKDGFVITNVDMANRTIRNLFATGGEVTQAEEMTKQSFETDIKIAKEAIKRGLSVEEN 293

Query: 275 ---------LVFPNQKEADEAF----QSLKKGKKFIQLAEE--QGKSLSDISLGSFSKEY 319
                    L    +K+  +++      LK   +  +LA +       + +   +   E 
Sbjct: 294 LSTTDKLYGLRTKLEKDIKDSYKVSEDELKNFFEKNKLAYDTAASSDANIVEFKAEVSEK 353

Query: 320 IPDVSLADS-------------IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
             + +L  +               ++      +    G  G+        K      F++
Sbjct: 354 DKETALEKAKEILKEATPENFEELAIKYSEGPSGPKGGDLGWF------EKGQMVKPFED 407

Query: 367 V---------------------------KKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
                                       K++   + R    + K+ ++ K+L +  AL  
Sbjct: 408 AVFKGESGKVYPEIVETQFGHHIIYVEEKEESKAKARHILITNKISDETKKLLKDEAL-- 465

Query: 400 SMDEISRREKIVSIDLPLVDFAGKDV----------KGKEVAAIPYKEQLLFRVFGKDDP 449
               +  + +   +    V   GK++          +G  +  + YK +L   +F  +  
Sbjct: 466 ---SVVDKLQNKELTFEEVSKGGKNIVASKAYTGITEGGYIPELGYKIELAKEIFKSE-- 520

Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
           L+K   V      Y++ +IKE    +    EEV   VK D   +K+ EE+  
Sbjct: 521 LNKFQFVESQGEIYVFQKIKEVKYKKA-DFEEVKDRVKYDLLNIKSQEELKK 571


>gi|257880272|ref|ZP_05659925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,230,933]
 gi|257882126|ref|ZP_05661779.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,502]
 gi|257885317|ref|ZP_05664970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,501]
 gi|257890929|ref|ZP_05670582.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,410]
 gi|260562427|ref|ZP_05832941.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           C68]
 gi|257814500|gb|EEV43258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,230,933]
 gi|257817784|gb|EEV45112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,502]
 gi|257821173|gb|EEV48303.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,501]
 gi|257827289|gb|EEV53915.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,410]
 gi|260073351|gb|EEW61692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           C68]
          Length = 340

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 32/270 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +  D+  M  G +  S+   +       ++     I+    +       ++  +   ++K
Sbjct: 30  TNKDIATMKGGTITVSDFYDEAKLESSNQSLVQRMIIYKVFNNKYGDKVTDKQVDAEYDK 89

Query: 220 YKDN-------------YRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              +             Y    YK  I   L      +  ++I++D+L+  ++       
Sbjct: 90  QAKSLGDTFESQLEAAGYTKDTYKEYIRNNLAFEAGLKAHVDITDDDLKTAWKSFHP--- 146

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIP 321
                  + +   ++ EA +  +S   G  F +LA+++         G   K        
Sbjct: 147 ---EVEAQIIKLSSEDEAKDVKKSADDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTI 203

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSF------GYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              + ++ F L K G+ + VI  +        Y +  +   +        + K  + +  
Sbjct: 204 PAEVKEAAFKL-KDGEISDVITTTNPTSYATEYYVVKMVKNQNKGN-DMDKYKDQLKDIA 261

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEIS 405
             TK S+         EE       + + +
Sbjct: 262 TETKLSDNAFTTKVIGEELKDANVKIKDDA 291


>gi|257458242|ref|ZP_05623392.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
 gi|257444352|gb|EEV19445.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
          Length = 506

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/442 (11%), Positives = 151/442 (34%), Gaps = 82/442 (18%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSS---FINSWKQELGMISQKIG 72
           I LV   + F+    +      +  + +     +++ +++   F+  ++ +L   ++  G
Sbjct: 15  IILVFSVITFVFIPAAGGQAGSNAKTMLGKWKNKRLDYTADGLFLREYR-QLRSSAEMRG 73

Query: 73  FVVNSERARSVGLDKKILD-----NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
           ++ +  +A+   ++++I+      +++  A   +   + G    +  +   +     +  
Sbjct: 74  YLRSDNKAQQEFMERQIMRTAFNASMIQLAA-QEEALNAGFYLPNKNINRAL--ISFYTD 130

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG------GMRPSNLLLDQ 181
               +S  ++     ++ +    Y       L+    +    G      G++ S+     
Sbjct: 131 STGAYSEKLYNETSEQQRL---AYRRQVIDYLTAQRYIEDNFGTYDNIFGLKTSSAETAF 187

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
            ++   + R  +Y+V      P                                      
Sbjct: 188 VQKMAEKERIFNYVVFEESQFP-------------------------------------- 209

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLA 300
                    ++++   E++ + +       +  + F +Q++A++  Q+L+KG+  F    
Sbjct: 210 --------QEKIREYGEEHADLFA---EHNLLMMTFTSQEDANKTAQALEKGEITFEDAV 258

Query: 301 EEQGKSLSDISLGSFSKEY-------IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
                 +   S G     Y        P+    D++  L    + +PV+  S+GY I   
Sbjct: 259 ITNSTKVGTDSNGKLLSPYRTTVNRTFPESKDLDTVLKLG-VDEVSPVVKTSYGYAIVKC 317

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITK---ASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
           +    +   +  E +  + + M+  +     + +++  K   E   +G    E S  + +
Sbjct: 318 TAPVTAADFTLTETQDRVFSYMKSNERGIIEDYLEQKAKTFAEAAKIGGFAHEASVNDLV 377

Query: 411 VSIDLPLVDFAGKDVKGKEVAA 432
           V    P+    G      +++A
Sbjct: 378 VQTSNPITLNYGNAAILPQISA 399


>gi|163788662|ref|ZP_02183107.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Flavobacteriales bacterium ALC-1]
 gi|159875899|gb|EDP69958.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Flavobacteriales bacterium ALC-1]
          Length = 484

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 113/369 (30%), Gaps = 61/369 (16%)

Query: 166 GMFVGGMRPSNLLLDQAKRFYFE------NRSVDYIVLNNRHVPAIADPSNAVLTQ-WFE 218
                 +  + L +        +       R + Y+      +      S   L    FE
Sbjct: 110 QAIQDSVLVNELYIQSQVEQRLQYLLAQTKRDMQYL------LNIYNKDSEEALRDEMFE 163

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE---KNKEKYFSPEIRTVEQL 275
             K+ Y A E ++         +   +IE++ +E++  +    ++++  F  E++  E +
Sbjct: 164 ITKNEYLALEMQK---------KVTGEIEVTPEEVRQFFNSIPEDEKPIFGTELKLAEIV 214

Query: 276 VFP--NQKEADEAFQSLK--------KGKKFIQLAEEQGKSLSDISLGSF----SKEYIP 321
           V P   Q         LK         G  F                G       K+   
Sbjct: 215 VIPEVTQAAKQAVIDKLKGFKRDVEENGASFTTKVLFYTDDKPSKPNGGLYKLNRKQPRM 274

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                +  FSL ++G+ +      +GY I  +  I+        +V+  +        A 
Sbjct: 275 VKEFREVAFSL-QEGEISEPFETEYGYHIILLEKIRGQQY----DVRHILLRPELTQDAI 329

Query: 382 EKVKEDYKRLEEFLALGT-SMDEISRR--------EKIVSIDLPLVDFAGKDVKGKEVAA 432
           +K K++   +   +  GT +  + +R          +   +  P       ++   +   
Sbjct: 330 QKAKDEIDEVRAKIIDGTLTFAQAAREFSDEDKTKYEGGQMTNPTTQDFNFELTKMDTEL 389

Query: 433 IPYKEQL----LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
               + L    +  V   +D +++     L        +I +      R   ++     +
Sbjct: 390 YTQIQDLKDSEISEVLQDEDQVNRLKFKILTVTD----RIDDHKADFARDYLKIKELALQ 445

Query: 489 DWKTVKTAE 497
           D +    A+
Sbjct: 446 DKQVEAIAK 454


>gi|69244418|ref|ZP_00602834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           DO]
 gi|258614785|ref|ZP_05712555.1| rotamase family protein [Enterococcus faecium DO]
 gi|293560739|ref|ZP_06677218.1| foldase protein PrsA [Enterococcus faecium E1162]
 gi|293566174|ref|ZP_06678577.1| foldase protein PrsA [Enterococcus faecium E1071]
 gi|314938540|ref|ZP_07845824.1| putative foldase protein PrsA [Enterococcus faecium TX0133a04]
 gi|314940885|ref|ZP_07847791.1| putative foldase protein PrsA [Enterococcus faecium TX0133C]
 gi|314948094|ref|ZP_07851496.1| putative foldase protein PrsA [Enterococcus faecium TX0082]
 gi|314952022|ref|ZP_07855045.1| putative foldase protein PrsA [Enterococcus faecium TX0133A]
 gi|314991903|ref|ZP_07857358.1| putative foldase protein PrsA [Enterococcus faecium TX0133B]
 gi|314995161|ref|ZP_07860275.1| putative foldase protein PrsA [Enterococcus faecium TX0133a01]
 gi|68196359|gb|EAN10787.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           DO]
 gi|291590100|gb|EFF21892.1| foldase protein PrsA [Enterococcus faecium E1071]
 gi|291605330|gb|EFF34785.1| foldase protein PrsA [Enterococcus faecium E1162]
 gi|313590570|gb|EFR69415.1| putative foldase protein PrsA [Enterococcus faecium TX0133a01]
 gi|313593487|gb|EFR72332.1| putative foldase protein PrsA [Enterococcus faecium TX0133B]
 gi|313595812|gb|EFR74657.1| putative foldase protein PrsA [Enterococcus faecium TX0133A]
 gi|313600243|gb|EFR79086.1| putative foldase protein PrsA [Enterococcus faecium TX0133C]
 gi|313642097|gb|EFS06677.1| putative foldase protein PrsA [Enterococcus faecium TX0133a04]
 gi|313645510|gb|EFS10090.1| putative foldase protein PrsA [Enterococcus faecium TX0082]
          Length = 336

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 32/270 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +  D+  M  G +  S+   +       ++     I+    +       ++  +   ++K
Sbjct: 26  TNKDIATMKGGTITVSDFYDEAKLESSNQSLVQRMIIYKVFNNKYGDKVTDKQVDAEYDK 85

Query: 220 YKDN-------------YRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              +             Y    YK  I   L      +  ++I++D+L+  ++       
Sbjct: 86  QAKSLGDTFESQLEAAGYTKDTYKEYIRNNLAFEAGLKAHVDITDDDLKTAWKSFHP--- 142

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIP 321
                  + +   ++ EA +  +S   G  F +LA+++         G   K        
Sbjct: 143 ---EVEAQIIKLSSEDEAKDVKKSADDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTI 199

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSF------GYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              + ++ F L K G+ + VI  +        Y +  +   +        + K  + +  
Sbjct: 200 PAEVKEAAFKL-KDGEISDVITTTNPTSYATEYYVVKMVKNQNKGN-DMDKYKDQLKDIA 257

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEIS 405
             TK S+         EE       + + +
Sbjct: 258 TETKLSDNAFTTKVIGEELKDANVKIKDDA 287


>gi|212690534|ref|ZP_03298662.1| hypothetical protein BACDOR_00016 [Bacteroides dorei DSM 17855]
 gi|237708010|ref|ZP_04538491.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
 gi|212666883|gb|EEB27455.1| hypothetical protein BACDOR_00016 [Bacteroides dorei DSM 17855]
 gi|229457996|gb|EEO63717.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
          Length = 446

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 53/143 (37%), Gaps = 16/143 (11%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLV------------FPNQKEADEAFQSLKKGKKFI 297
              ++  Y +++++  + +   +  +                 ++ D  + +L+ G  F 
Sbjct: 103 EQTVRQLYLRSEQRLQTNDWIRIAHISKYLPQNVGRQDELRVLQQMDSVYAALQGGADFS 162

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHGSFGYVIAHVSN 355
            LA       +  ++G        + ++ + I  LA  +K   +   +   G  I    +
Sbjct: 163 ALACRYSDDTTCKNMGGLLPWMPVNKNMQEWIDKLASLEKNKISAPFYSPMGIHIIKWID 222

Query: 356 IKPSFTVSFQEVKKDIANQMRIT 378
            KP   +SF+E ++ + N +   
Sbjct: 223 RKPG--ISFEEKREQLLNYLEKN 243


>gi|301165393|emb|CBW24964.1| putative peptidyl-prolyl cis-trans isomerase [Bacteriovorax marinus
           SJ]
          Length = 271

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 30/167 (17%)

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSL-- 290
           D+  + KKI +++ ++   Y+ +      PE RT   ++F     P ++E + A      
Sbjct: 101 DLEPRLKKIVVTDADVDKYYKDH------PEYRTA-HILFRVRTNPEKEENEAALNQALK 153

Query: 291 ------KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK---KGDFTPV 341
                 KK + F +LA +  +S +  + G     + P + LA   F+  K       TP 
Sbjct: 154 VYNTLKKKPELFSELANKFSQSSTAPNGGDM--GFQPAIRLAPEYFNAIKGKADNFITPP 211

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           +   FGY I  V  +K     S       +  ++   +  + + ++Y
Sbjct: 212 VKTQFGYHIIKVMAVK--SVKSINNA---LYKKIVYDQKRDAILDNY 253



 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 46/132 (34%), Gaps = 1/132 (0%)

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
             +  E   ++A ++     K+ + F ++      S    N  +           +  + 
Sbjct: 140 EKEENEAALNQALKVYNTLKKKPELFSELANKFSQSSTAPNGGDMGFQPAIRLAPEYFNA 199

Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
           +  G  +     P++    Y + KV   K         +   +       +LD+  + L+
Sbjct: 200 I-KGKADNFITPPVKTQFGYHIIKVMAVKSVKSINNALYKKIVYDQKRDAILDNYFSELR 258

Query: 612 SQYSVTVHDNLI 623
           ++ ++ +++  +
Sbjct: 259 AKANIKINEETL 270


>gi|238503942|ref|XP_002383203.1| peptidyl-prolyl cis-trans isomerase [Aspergillus flavus NRRL3357]
 gi|317138383|ref|XP_003189039.1| peptidyl-prolyl cis-trans isomerase pin4 [Aspergillus oryzae RIB40]
 gi|220690674|gb|EED47023.1| peptidyl-prolyl cis-trans isomerase [Aspergillus flavus NRRL3357]
          Length = 122

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF  +A E  +  +    SLG   +  + D +   + 
Sbjct: 33  VRHILCEKHSKKEEALEKLRNGSKFDDVAREFSEDKARQGGSLGWKVRGSL-DGTFEKAA 91

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           + L +               FGY I  V   K
Sbjct: 92  YEL-EPSTTANPKYVEVKTGFGYHIIMVEGRK 122


>gi|83312815|ref|YP_423079.1| parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
 gi|82947656|dbj|BAE52520.1| Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
          Length = 421

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/421 (11%), Positives = 118/421 (28%), Gaps = 104/421 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
                 V  + +         K  L +    +   + S R        ++L  +V     
Sbjct: 28  DRIAAVVNDEIISIRDLDARLK--LAITVSGLPDNIESRRRAVP----QVLRKMVDERVQ 81

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q    + + A    V   +A                      +  +             
Sbjct: 82  AQEAARLRVAAGADEVARGVANVE------------------NQNRMPPGS--------- 114

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
               ++          + + DQ K        + ++ L  R +          +T+  E 
Sbjct: 115 ----LLPSLAKAGVDPDAVKDQIKA------DIIWVKLIMRTLQPTIRVGEDEITERIET 164

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            +  +  PE+      L     ++++                                 +
Sbjct: 165 LRQQFGQPEFMLAEIFLPVDSPRQEE--------------------------------ES 192

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           ++  +   + L+ G  F  LA +    G + +   LG  S   + D  + +++  L K G
Sbjct: 193 KRLGERLIEQLRAGAPFQALARQFSQSGTANNGGVLGWLSAAALED-DIRETVSRLDK-G 250

Query: 337 DFTPVIHGSFGYVIAHVSNIK---------------------PSFTVSFQEVKKDIANQM 375
             + ++    GY I  + + +                     P  +    ++    A   
Sbjct: 251 QVSGLVRTGTGYAILALIDKRVAGESNVSDPKLNISQVFFPVPPGSPPISQLMAKAAELT 310

Query: 376 RITKASEKVKEDYKRLEEFLAL---GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
              ++ +++ +  ++L    +    G ++  + +  + V+  LPL   +     GK +  
Sbjct: 311 ANVRSCDEMDDLGRKLNSEQSGRRDGVTLSVLPQNIRSVASSLPLHKASAPINMGKALLV 370

Query: 433 I 433
           +
Sbjct: 371 L 371


>gi|300694578|ref|YP_003750551.1| isomerase [Ralstonia solanacearum PSI07]
 gi|299076615|emb|CBJ35952.1| putative isomerase [Ralstonia solanacearum PSI07]
          Length = 278

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 12/167 (7%)

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
            E    +     + +  K   +++++++A Y+         E +    +   +   A + 
Sbjct: 96  QEAHDAAITQAWLKDNIKPAPVTDEQVKARYDAIVASLGDKEYK-AHVIQLGDDVTAAQV 154

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLADSIFSLAKK 335
              LK+G  F +LA++   + + +  G              K     + LA  I +LA  
Sbjct: 155 LAQLKQGGDFAKLAQQYSTAPNKVRGGDMDWVSFKVPAEEGKTQNLPLPLAREIAALAVG 214

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
              T  +       +  V   +P+   ++  VK  I   +   +   
Sbjct: 215 ATSTAPVEVGSQRYLVKVDAARPTQVPAYDVVKPAIRQALETAELER 261


>gi|291060284|gb|ADD73019.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 507

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/502 (12%), Positives = 144/502 (28%), Gaps = 103/502 (20%)

Query: 6   RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
           R A  +    + L V  + F+   L        G   + S G   +  +   + + Q+  
Sbjct: 8   RGALASTGGCVVLAVAALMFVF--LPALSGGGHGHVRLGSWGGVALTNAP-DSLFSQQYS 64

Query: 66  MISQKIGF--VVNSERARSVGLDKKILDNLVSGATLD----QFIEDIGLEADHGRVWGEI 119
            ++Q      +   +     G+D+++L      A +     +  +  G       +  E+
Sbjct: 65  ALAQTAERYNLYPKDAQEREGMDRRVLRAAFRAAVVQLAGTEQTKQSGFTLSEELLDREV 124

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV---------- 169
                +   D  +S   +           +       K +  + +   ++          
Sbjct: 125 LS--FYADADGTYSPQRYQG-------TPEHVRLSQRKKMRDSLLSDQYLYHLFGKETGR 175

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
           GG++ ++  L   +    + RS  Y+VL     PA        ++ + +++   +     
Sbjct: 176 GGLKLNSRELRFVQDMAKKERSFRYVVLGEERFPA------ERVSAYGKEHAHLFTL--- 226

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
                                                     +  L + ++++A    ++
Sbjct: 227 ----------------------------------------HHLSLLTYSSEEDARRTARA 246

Query: 290 LKKGK-KFIQLAEEQGKSLSDISLGSFSK-------EYIPDVSLADSIFSLAKKGDFTPV 341
           L+K +  F          +   + G  +        E+ PD    D++   A  G  +PV
Sbjct: 247 LEKRELSFEDAVATGSTKVGTDATGKMTHSYRSDVNEFFPDAQDLDTVLRTA-VGALSPV 305

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITK--ASEKVKEDYKRLEEFLAL 397
           +    G+ I             F +   ++ +   M   +    E+  E+        A 
Sbjct: 306 VKIERGFAIVRTDA--EPSAPDFSDAATRERVFAHMARVERGTIERFLEEEAHTFSTRAK 363

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVK---------GKEVAAIPYKEQLLFRVFGKDD 448
                  ++   +             +V             +A I Y E+     F    
Sbjct: 364 QGGFTAAAQSLNLDVHTSRSFPINFGNVDVLPALPRQSDPPLARIAYDEKFFSTAFALLP 423

Query: 449 PLSKDHTVALPDGSYMWVQIKE 470
               D  +   D S + +Q+ E
Sbjct: 424 GQVSDPLIL--DSSVVLLQLHE 443


>gi|256845592|ref|ZP_05551050.1| peptidylprolyl isomerase [Fusobacterium sp. 3_1_36A2]
 gi|294785119|ref|ZP_06750407.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 3_1_27]
 gi|256719151|gb|EEU32706.1| peptidylprolyl isomerase [Fusobacterium sp. 3_1_36A2]
 gi|294486833|gb|EFG34195.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 3_1_27]
          Length = 563

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 117/353 (33%), Gaps = 44/353 (12%)

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
           KE  +   K L    +  + +   +   +  +      F+    DY V     V     P
Sbjct: 253 KEDAEKQAKELISRQIKMVKIAKEKGVKVNENLDTISQFQ----DYYVGLAEKVRDEVKP 308

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           ++  L ++F + K  Y  P       +   V   ++   ++ ++ +    +   + F+  
Sbjct: 309 TDEDLLKFFNENKSKYSIPATADAKLVFISVKSAKEDDNLAKEKAEKLLSELTPENFT-- 366

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
                                 +KGK          + +    LG+F    +      ++
Sbjct: 367 ----------------------EKGKSLS-----NNQDIIYQDLGTFGTTAMVK-EFEEA 398

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           +  +        VI   FGY +A+V     +   + + +   +       K   +  E  
Sbjct: 399 LKDVPSNTVVNKVIKTKFGYHVAYVKKNDNNRQWAVEHI---LIVPYPSEKTMTEKLEKL 455

Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
            +++  +  GT    ++  +KI    +   D  G    G     I Y  ++   VFG + 
Sbjct: 456 NKVKADIEAGT----LTLNDKIDEDVIQSFDAKGITPDGIIPNFI-YDPEIAKAVFGTE- 509

Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
            L+K   +     + +  Q  + + A D    +    VK D+   K AE +S 
Sbjct: 510 -LNKVGIINPNKATIVVFQKTKEVKAEDANFNKSKEQVKSDYINNKVAEYMSK 561



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 87/622 (13%), Positives = 198/622 (31%), Gaps = 76/622 (12%)

Query: 4   IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
            IRK  +    K F+++L V F++        S   S          +    +I   K E
Sbjct: 2   SIRKFRKQ--MKPFIIILTVVFILSLAYGGYESYKTSRANKKAQEAMLLNKDYIQ--KIE 57

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
           +    Q +     ++R     +D    ++++         +D+ ++     V     +  
Sbjct: 58  IERAKQDLSRTY-ADRVDKDIVDILAFNDVIDKNLTLHIAKDLKVKVPSSEVDK---QYE 113

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
                      + F   L   G+ +    +   + L        F   + P++  ++   
Sbjct: 114 ELESSMG--DKEQFRRMLQVRGLTKDSLKNQIEENLLMQQTREEFAKNINPTDEEINAYM 171

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
             Y          +N       A+     L +  ++ +    APEY+ +   +     +E
Sbjct: 172 ALYSIPADKKEEAVNLYKSEKGAEAFREALLKARKEMQIKDLAPEYENL---IEKTAYEE 228

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEE 302
           +   I+N +L            +  +   +++   ++++A++  + L   + K +++A+E
Sbjct: 229 EGFAITNLDLAR---------ATANVMLGQKI---SKEDAEKQAKELISRQIKMVKIAKE 276

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSI-------------FSLAKKGDFTPVIHGSFGYV 349
           +G  +++ +L + S+     V LA+ +             F    K  ++         V
Sbjct: 277 KGVKVNE-NLDTISQFQDYYVGLAEKVRDEVKPTDEDLLKFFNENKSKYSIPATADAKLV 335

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
              V + K               + +   KA + + E     E F   G S+   S  + 
Sbjct: 336 FISVKSAKED-------------DNLAKEKAEKLLSELTP--ENFTEKGKSL---SNNQD 377

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
           I+  DL          + +E         ++ +V          +     +     V+  
Sbjct: 378 IIYQDLGTFGTTAMVKEFEEALKDVPSNTVVNKVIKTKFGYHVAYVKKNDNNRQWAVEHI 437

Query: 470 ESIP-ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
             +P   ++              T K  +    KA+      +   K   D+ ++  A  
Sbjct: 438 LIVPYPSEKT------------MTEKLEKLNKVKADIEAGTLTLNDKIDEDVIQSFDAKG 485

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
           +T + I      N  +  +    VF   +  V      N  + VVF+ T          +
Sbjct: 486 ITPDGI----IPNFIYDPEIAKAVFGTELNKVGIIN-PNKATIVVFQKTKEVKAEDANFN 540

Query: 589 KFISYLTQMMNKDLLDSVIAYL 610
           K    +      + +   ++ L
Sbjct: 541 KSKEQVKSDYINNKVAEYMSKL 562


>gi|23394408|gb|AAN31492.1| peptidylprolyl isomerase [Phytophthora infestans]
          Length = 265

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 14/104 (13%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGK----KFIQLAEEQGKSLS---DISLGSFSKEYIP 321
                 L+   + EAD+    L +      KF QLA+E  K  S      LG+F +  + 
Sbjct: 31  QAHASHLLVDTEAEADDLSVQLGEASNLFLKFAQLAKEHSKCPSSRKGGDLGTFDRGQMV 90

Query: 322 DVSLADSIFSLAKKGDFTPVI--HGSFGYVIAHVSNIKPSFTVS 363
                   F    +G+   V      FG+ +  +S         
Sbjct: 91  -PEFDKVAF----EGEIGVVHKVKTQFGWHLVLISRRLDGTEEP 129



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 10/95 (10%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKK----FIQLAEEQGKSLS---DISLGSFSKEYIP 321
                 ++  ++ EAD+ F+ +   +       +LA +     S      LG F +  + 
Sbjct: 167 RARAFHILVKSEDEADKLFKEIDAAEDKKTKLSELAGKHSTCPSGKKGGDLGMFGRGEMV 226

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
                  +F   + G+   V    FG+ +   +  
Sbjct: 227 -PQFDKVVFE-GEVGELAKV-QTQFGWHVLLCTER 258


>gi|163859314|ref|YP_001633612.1| peptidylprolyl isomerase family protein [Bordetella petrii DSM
           12804]
 gi|163263042|emb|CAP45345.1| Peptidylprolyl isomerase family protein [Bordetella petrii]
          Length = 248

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 50/154 (32%), Gaps = 18/154 (11%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------ 292
           +  +    E  +   +  YE + E++   E+   + ++F    + D   Q L++      
Sbjct: 64  LDSQAATPEPDDAACRRHYEMHPERFTVGELVEADHILFQVTPQVD--LQRLRERAEAAL 121

Query: 293 ------GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                  ++F +LA        +    SLG   +          ++F          ++ 
Sbjct: 122 QQAQAEPERFAELARALSNCPSAAVGGSLGQLGRGDTV-PEFERAVFGQPAGTVLPRLVE 180

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
              G  I  +        + +++V   IA  +  
Sbjct: 181 TRHGLHIVRIVRHVAGRLLPYEQVAPRIAQALAA 214


>gi|119592218|gb|EAW71812.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Homo sapiens]
          Length = 80

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSIFSLAKKGD----- 337
           EA + LK G +F ++A +  +  +     LG  ++  +      ++ F+L   G      
Sbjct: 2   EAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEAAFALPVSGMDKPVF 60

Query: 338 FTPVIHGSFGYVIAHVSNIK 357
             P +   FGY I  V   K
Sbjct: 61  TDPPVKTKFGYHIIMVEGRK 80


>gi|46849509|dbj|BAD17840.1| unknown protein [Hydrogenobacter thermophilus]
          Length = 174

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 67/176 (38%), Gaps = 12/176 (6%)

Query: 451 SKDHTVALPDGS-YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
            KD  +   +G  Y+ V +    PA  R  EEV   ++      + A  +  KA ++   
Sbjct: 4   QKDGILVTKEGDEYLIVYLYRVEPAGIRSFEEVKEQIRSALIDKRKASLLRDKAQEIYKR 63

Query: 510 YSKEGKNFRDIGKNLGASLLT--TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN 567
            ++        GK++    LT     ++++ +  K      +S + S   ++   + +  
Sbjct: 64  LTE--------GKDVSVKYLTFEDTPVDQIMSIAKVKEGQVVSFILS-KQKVFGPYELSQ 114

Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           G    V      K    +E  K    +  M +   ++ +I +L     + +++ +I
Sbjct: 115 GYGVFVITDRKKKPADEEEIKKLTQDILNMKSDATVNYLIEHLIRSAKIKINEEVI 170



 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
           V      Y+I ++  ++P+   SF+EVK+ I + +   + +  +++  + + + L  G  
Sbjct: 10  VTKEGDEYLIVYLYRVEPAGIRSFEEVKEQIRSALIDKRKASLLRDKAQEIYKRLTEGKD 69

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
           +    +        +  +    K  +G+ V+ I  K+++ 
Sbjct: 70  VS--VKYLTFEDTPVDQIMSIAKVKEGQVVSFILSKQKVF 107


>gi|83311573|ref|YP_421837.1| parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
 gi|82946414|dbj|BAE51278.1| Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
          Length = 106

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 282 EADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           E +   + + +G  F Q+A +      S     LG F K  +       + F+L K G+ 
Sbjct: 32  EINNIKEEINQGADFGQMARQYSDCPSSEDGGDLGEFPKGAMV-PEFEVAAFAL-KSGEV 89

Query: 339 TPVIHGSFGYVIAHVSN 355
           + V+   FG+ +   ++
Sbjct: 90  SGVVETPFGFHLIQRTD 106


>gi|224536050|ref|ZP_03676589.1| hypothetical protein BACCELL_00914 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522333|gb|EEF91438.1| hypothetical protein BACCELL_00914 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 454

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 76/217 (35%), Gaps = 25/217 (11%)

Query: 240 HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEAFQ--------- 288
            +   +I+I+  E++  ++        + P    V+ +    +   +E            
Sbjct: 146 QKLVGEIKITPAEVRRHFKDLPQDSIPYIPTQVEVQIITQQPKIPLEEIEDVKSRLREYT 205

Query: 289 -SLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
             + KG+ F  LA     ++G +++   +    + Y+ D + A+  F+L      + ++ 
Sbjct: 206 DRVNKGESFSMLARLYSDDRGTAINGGEMPFTGRGYL-DPAFANVAFNLQDPNKVSKIVE 264

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMD 402
             +G+ I  +   +         V+  +       +A          + + +  G  + +
Sbjct: 265 SEYGFHIIQLMEKRGDRIK----VRHILLKPHVPEEALMAGTARLDSIADDIRNGKFTFE 320

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           E +    ++S D    +  G     +   +    ++L
Sbjct: 321 EAAS---VLSQDKDTRNNHGLLPNPQTNTSKFEMQEL 354


>gi|197124849|ref|YP_002136800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
 gi|196174698|gb|ACG75671.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
          Length = 354

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 35/219 (15%)

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
             + +  A      A L ++++++K  Y  P   R++ ++++                  
Sbjct: 111 FQDANGAAAEAMPEADLQKYYDEHKAEYYRPRRVRLAAVVWNAPA--------------- 155

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD----ISL 312
                    SPE           +  A    +  K    F QL  E  +  +       L
Sbjct: 156 --------GSPERAAKV--ALAKKALAKLKAEEKKNTLAFAQLVNEFSEDAASKATAGDL 205

Query: 313 GSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
           G  S+E +        AD  F+L + G  + V+  +    +   +  +     +F++VK 
Sbjct: 206 GFKSREDLEKAYSKEFADVTFNL-QPGATSGVLETANAVYLVKGTGEQDELNRTFEQVKA 264

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I  ++   K +++     K+L +      S+DE +   
Sbjct: 265 QIQTKLYREKKTKEFDGWLKKLRDDAK--VSIDEKALEA 301


>gi|261867180|ref|YP_003255102.1| SurA [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412512|gb|ACX81883.1| SurA [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 310

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/355 (9%), Positives = 97/355 (27%), Gaps = 83/355 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V +V    +  S   ++                     +     +  L+ ++    +
Sbjct: 26  EKVVATVNGIPILESQVQSAIN-------------------KKTNDRQAALNKVIDDILV 66

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           DQ +++  ++ ++ ++   I          N  +    +  L  +GI+ + Y     + +
Sbjct: 67  DQAVKESDVKVNNAQIDQIIEGIAA----QNGLTFGQLLDALDYQGISYRAYRQQIAQQV 122

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
             ++V        +  S   ++   +   +           +   ++A  S+        
Sbjct: 123 MMSEVRNHAISQSVDVSREQVEVLAKKMLDE---------AKAKGSVAQISDT------- 166

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                        + +IL  ++      +                    E    + +V  
Sbjct: 167 ----------QYEVRHILLKLNPLLNDAQAK---------------AQLEQIRADIIVGK 201

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA--DSIFSLAKKG 336
                            F   A +  K     + G       P++ +   +      K G
Sbjct: 202 T---------------TFADAALKYSKDYLSGANGGSLGYAFPEMYVGPFNQAVRTTKPG 246

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +      FG+ I  V+N + +   +    ++    Q+   +  +   +  + L
Sbjct: 247 VISAPFKTEFGWHILEVTNTRQA-DRTEDAYRQKAYEQIVNQQLQDSALDWVQAL 300



 Score = 37.3 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 3/123 (2%)

Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
           +  ++  Q+  +       F D         L+      +            +Q      
Sbjct: 185 QAKAQLEQIRADIIVGKTTFADAALKYSKDYLSGANGGSLGYAFPEMYVGPFNQAVRTTK 244

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS---VIAYLKSQY 614
             V   P +    + + +VTN++     E         Q++N+ L DS    +  L+ + 
Sbjct: 245 PGVISAPFKTEFGWHILEVTNTRQADRTEDAYRQKAYEQIVNQQLQDSALDWVQALRKRA 304

Query: 615 SVT 617
            + 
Sbjct: 305 DIK 307


>gi|237725282|ref|ZP_04555763.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D4]
 gi|229436548|gb|EEO46625.1| peptidyl-prolyl cis-trans isomerase [Bacteroides dorei 5_1_36/D4]
          Length = 446

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 53/143 (37%), Gaps = 16/143 (11%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLV------------FPNQKEADEAFQSLKKGKKFI 297
              ++  Y +++++  + +   +  +                 ++ D  + +L+ G  F 
Sbjct: 103 EQTVRQLYLRSEQRLQTNDWIRIAHISKYLPQNVGRQDELRVLQQMDSVYAALQGGADFS 162

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHGSFGYVIAHVSN 355
            LA       +  ++G        + ++ + I  LA  +K   +   +   G  I    +
Sbjct: 163 ALACRYSDDTTCKNMGGLLPWMPVNKNMQEWIDKLASLEKNKISAPFYSPMGIHIIKWID 222

Query: 356 IKPSFTVSFQEVKKDIANQMRIT 378
            KP   +SF+E ++ + N +   
Sbjct: 223 RKPG--ISFEEKREQLLNYLEKN 243


>gi|31983504|ref|NP_858118.1| peptidylprolyl isomerase [Lactococcus lactis subsp. cremoris]
 gi|13491881|gb|AAK27980.1|AF247159_5 PrtM precursor [Lactococcus lactis subsp. cremoris]
          Length = 299

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 26/187 (13%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             S   +   ++ YK  Y              R+   + +          +K  ++S  +
Sbjct: 76  SVSTKTVNDAYDSYKQQYGENFDAFLSQNGFSRSSFKESLRTNFLSEVALKKLKKVSESQ 135

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+A ++  + K       TV+ ++  ++  A +    L  GK F  LA+      +    
Sbjct: 136 LKAAWKTYQPK------VTVQHILTSDEDTAKQVISDLASGKDFAMLAKTDSIDTATKDN 189

Query: 313 GSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
           G            D +  D+ + L         +  + GY +  +  I      +F   K
Sbjct: 190 GGKISFELNNKTLDATFKDAAYKLKNGDYTQTPVKVTDGYEVIKM--INHPAKGTFTSSK 247

Query: 369 KDIANQM 375
           K +   +
Sbjct: 248 KVLTASV 254


>gi|297851036|ref|XP_002893399.1| peptidyl-prolyl cis-trans isomerase PPIC-type family protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297339241|gb|EFH69658.1| peptidyl-prolyl cis-trans isomerase PPIC-type family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 142

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA++ L+ G           +F ++A E  +  S      LG F +
Sbjct: 44  KARHVLCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIAAEYSECPSGKKGGDLGWFPR 103

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      D  F+    G  +     + GY I      K
Sbjct: 104 GKMAGP-FQDVAFN-TPVGVTSAPFKSTHGYHIILSEGRK 141


>gi|18395946|ref|NP_564250.1| peptidyl-prolyl cis-trans isomerase PPIC-type family protein
           [Arabidopsis thaliana]
 gi|9797744|gb|AAF98562.1|AC013427_5 Contains similarity to peptidyl-prolyl cis-trans isomerase EPVH
           from Homo sapiens gb|AF143096 and contains a Rotamase
           (PPIC-type PPIASE) PF|00639 domain. ESTs gb|T45176,
           gb|F14479, gb|AA586142, gb|F14459, gb|AI997648 come from
           this gene [Arabidopsis thaliana]
 gi|12083236|gb|AAG48777.1|AF332414_1 unknown protein [Arabidopsis thaliana]
 gi|21553425|gb|AAM62518.1| unknown [Arabidopsis thaliana]
 gi|332192582|gb|AEE30703.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Arabidopsis
           thaliana]
          Length = 142

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA++ L+ G           +F ++A E  +  S      LG F +
Sbjct: 44  KARHVLCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIAAEYSECPSGKKGGDLGWFPR 103

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      D  F+    G  +     + GY I      K
Sbjct: 104 GKMAGP-FQDVAFN-TPVGVTSAPFKSTHGYHIILSEGRK 141


>gi|53715358|ref|YP_101350.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
 gi|52218223|dbj|BAD50816.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
          Length = 517

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/425 (13%), Positives = 127/425 (29%), Gaps = 70/425 (16%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVE-----------QLVFPNQKEADEAFQSLKKGKK-- 295
                +  Y++ K +  + E++ +              +   Q   D  +  L+      
Sbjct: 107 DEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPHHLREAQNLMDSLYHVLEAHPDID 166

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  L  +      +  +G             +  FSL K G+++       G  I  V+ 
Sbjct: 167 FKTLVNKYSDDKKEFWMGWLQTS----QEFEEVAFSL-KDGEYSKPFFTPKGIQIVKVTG 221

Query: 356 IKPSFTVSFQEVKKDIANQMRI----TKASEKVKEDYKRLEEFLALGTSMDEI--SRREK 409
            +      F++++ ++ +++       K  E      K + ++      M+E+  S R  
Sbjct: 222 RRE--IPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKSICQYTPDKAGMEELLASGRTS 279

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
                L    F GKD +     A P   +     F     L  ++            +++
Sbjct: 280 RTLFTLDGKSFTGKDFERFA-DAHPMGIKRQLNAFVVKSILDYENN-----------RLE 327

Query: 470 ESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
           +  P     L++   D +       ++ +   S +  L   + +   ++         ++
Sbjct: 328 QKYPDFRLALQQRRDDLLLAAITRRESRQVSLSDSVALKAFFKEHRTDYNWDSPRYRGAV 387

Query: 529 LTTNQINRMDNENKFFG-------YDGISQVFSGPVE----MVKCFPIENGLSYVVFKVT 577
           L       + +  KF          D I   F+ P       ++      G +  V K+ 
Sbjct: 388 LHGTHKKTLKSARKFLKKLPEEEWKDAIRLTFNTPASPATIRIEQGTFAEGDNVFVDKLV 447

Query: 578 -------------------NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                                K GP    +  I  L +     L       L++   V +
Sbjct: 448 FKKGDFEPLKSYPFTVVLGEKKKGPESYHE-IIPQLIRDYQNHLDALWTERLRASAKVEI 506

Query: 619 HDNLI 623
           +  ++
Sbjct: 507 NQEVL 511


>gi|51473852|ref|YP_067609.1| hypothetical protein RT0667 [Rickettsia typhi str. Wilmington]
 gi|81389996|sp|Q68W65|Y667_RICTY RecName: Full=Uncharacterized protein RT0667; Flags: Precursor
 gi|51460164|gb|AAU04127.1| rickettsial conserved hypothetical protein [Rickettsia typhi str.
           Wilmington]
          Length = 295

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 67/179 (37%), Gaps = 16/179 (8%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           L+++   F  + ++ A      +S V SV  + + F+ F    K  +      +  V N 
Sbjct: 4   LLLIITVFSTFNVAQASL----TSIVASVNDKPITFNEFHARKKMIM-----VLNNVENL 54

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
              +   L    +++L+  + L Q+  D   E     +   I          NK  H   
Sbjct: 55  TSDQDKQLSDLAINSLIDESLLFQYAGDR--EIQQDEIDNAIKSIE----DRNKMPHGSL 108

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           +  L  + +N + +I      L + +++      ++ SN  +D       + + V+ ++
Sbjct: 109 LQYLKNKSVNPESFIFQIKSELIKMNILSSLSRSVQVSNKEID-VAILSSDQKDVEILM 166


>gi|301597698|ref|ZP_07242706.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB059]
          Length = 344

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQ--------KEADEAFQSLKKGKKFIQLAE----EQGK 305
           ++N++K   P+ +T   L+ P++        +  D  ++ LK G+ F  LA     + G 
Sbjct: 182 KQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSNDTGS 241

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           +    SLG  +   +        +  +   G+ +      FG+ I  V++ +        
Sbjct: 242 ARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFGWHILQVTDKRE------- 292

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLE 392
              KD+ ++ +   A + + E     E
Sbjct: 293 ---KDMTHEYQERMARQILGERQFNTE 316



 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 54/189 (28%), Gaps = 27/189 (14%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEAD 284
            ++       +   +I+IS+ ++    +  + +        V  +          Q  A 
Sbjct: 50  DLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAK 109

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIH 343
           E    L +      L ++   +   +         + D+    +   +  + G  T +I 
Sbjct: 110 EVRSQLAQSNDLNAL-KKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLIS 168

Query: 344 GSFGYVIAHVSN-------------------IKPSFTVSFQEVKKDIANQMRITKASEKV 384
              G  +  +                     I+PS  VS +  K+ I +  +  KA E  
Sbjct: 169 VRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDF 228

Query: 385 KEDYKRLEE 393
                    
Sbjct: 229 ATLAATYSN 237


>gi|294614167|ref|ZP_06694087.1| foldase protein PrsA [Enterococcus faecium E1636]
 gi|291592943|gb|EFF24532.1| foldase protein PrsA [Enterococcus faecium E1636]
          Length = 324

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 32/270 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +  D+  M  G +  S+   +       ++     I+    +       ++  +   ++K
Sbjct: 26  TNKDIATMKGGTITVSDFYDEAKLESSNQSLVQRMIIYKVFNNKYGDKVTDKQVDAEYDK 85

Query: 220 YKDN-------------YRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              +             Y    YK  I   L      +  ++I++D+L+  ++       
Sbjct: 86  QAKSLGDTFESQLEAAGYTKDTYKEYIRNNLAFEAGLKAHVDITDDDLKTAWKSFHP--- 142

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIP 321
                  + +   ++ EA +  +S   G  F +LA+++         G   K        
Sbjct: 143 ---EVEAQIIKLSSEDEAKDVKKSADDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTI 199

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSF------GYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              + ++ F L K G+ + VI  +        Y +  +   +        + K  + +  
Sbjct: 200 PAEVKEAAFKL-KDGEISDVITTTNPTSYATEYYVVKMVKNQNKGN-DMDKYKDQLKDIA 257

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEIS 405
             TK S+         EE       + + +
Sbjct: 258 TETKLSDNAFTTKVIGEELKDANVKIKDDA 287


>gi|289810450|ref|ZP_06541079.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 52

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142
           ++ L+  A LDQ+  ++ L     +V   I  +P F   D KF ++ + + + 
Sbjct: 1   MNRLIDEALLDQYSRELKLGISDEQVKQAIFATPAFQ-VDGKFDNNRYNAIVN 52


>gi|332654773|ref|ZP_08420515.1| putative mucin-2 (MUC-2) (Intestinal mucin-2) [Ruminococcaceae
           bacterium D16]
 gi|332516116|gb|EGJ45724.1| putative mucin-2 (MUC-2) (Intestinal mucin-2) [Ruminococcaceae
           bacterium D16]
          Length = 426

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/377 (11%), Positives = 105/377 (27%), Gaps = 71/377 (18%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELG---MISQKIG-----FVVNSERARSVGLDK 87
            +SG + V +VG  ++   S +      +         +G        ++E      + +
Sbjct: 53  GLSGDTVVATVGDTEITADSLLYWLAATVDGTAQYYAMMGMSASDLPWDTEMEDGSTMAE 112

Query: 88  KILDNLVSGATLDQF----IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
             L+N +  A L        +  GL                F  +       +    L  
Sbjct: 113 GFLNNALQTAALYALVPVIAQQEGLSVSDESAQTIQQAIDSFAQQAGG--DAMVDHMLWS 170

Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
             +    Y          T ++  + G   P                             
Sbjct: 171 SVLTRDLYTRMMQAGDLNTQLMNRYYGDGAPD---------------------------- 202

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
               P +A +  +              +  +IL    +  K I+ ++ +   EYE   + 
Sbjct: 203 ---APKDADILTYVSDNLQI-----AYKAKHILLKTVDTSKPIKDADGKATGEYEPLDDA 254

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
             + +  T E ++   Q  +D       K   F +L +E  +       G+ +     + 
Sbjct: 255 TVAQKKATAEDILAQLQATSD-------KEALFDELMKEYSEDTDSS--GNVNSPDGYEA 305

Query: 324 SLADSIFSLA------KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
                + +        + G+ + ++   +GY I     I+ +      + +    + +  
Sbjct: 306 KSGQMVAAFEEAALALQPGEISGIVESPYGYHIILRLPIQAA------DYRDQYVSYLMS 359

Query: 378 TKASEKVKEDYKRLEEF 394
            +    +++      + 
Sbjct: 360 QRQQGWLEQFPVETNDE 376


>gi|332687190|ref|YP_004456964.1| foldase protein PrsA , clustered with pyrimidine conversion
           [Melissococcus plutonius ATCC 35311]
 gi|332371199|dbj|BAK22155.1| foldase protein PrsA precursor, clustered with pyrimidine
           conversion [Melissococcus plutonius ATCC 35311]
          Length = 327

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 74/211 (35%), Gaps = 25/211 (11%)

Query: 200 RHVPAIADPSNAV---LTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIEISNDELQA 255
           +     A  + A    +  + ++        EYK+ I   L      E  I+ISN +L+ 
Sbjct: 81  KQYDETAKAAEAQGTTIEDYLKQNGQ--TVKEYKKTIKQGLAYQKGIEDHIKISNKDLKT 138

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDIS 311
            ++              + +  P +K+A +  + L  G  F ++A+E+            
Sbjct: 139 AWKSFHP------EVEAQIIQIPAEKDAKDIKKQLTDGGDFTKIAKEKSTDNQTKKDGGK 192

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG------SFGYVIAHVSNIKPSF--TVS 363
           +   S+       + D+ F L K G+ +  I           Y +  ++  K        
Sbjct: 193 IKFDSQTQSIPQEVKDAAFKL-KDGEVSEPIQTTNSSTYQSSYYLVKMNKNKAKGNDMKP 251

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           + +  K IA Q ++   +   K     L++ 
Sbjct: 252 YNKELKKIAKQTKMNDQAFTTKVIGDELKDA 282


>gi|330808733|ref|YP_004353195.1| peptidylprolyl isomerase (peptidyl-prolyl cis-trans isomerase C)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376841|gb|AEA68191.1| peptidylprolyl isomerase (peptidyl-prolyl cis-trans isomerase C)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 91

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++    +EA++  Q + KG+ F  LA++     S      LG      +  V   D
Sbjct: 4   QARHILVKTAEEAEQLKQRIAKGEAFDVLAKKYSTCPSGKRGGDLGEVRPGQMVGVI--D 61

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHV 353
           ++            I   FGY +  V
Sbjct: 62  AVIFKKPLRVVHGPIKSKFGYHLVQV 87


>gi|296272834|ref|YP_003655465.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097008|gb|ADG92958.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
           nitrofigilis DSM 7299]
          Length = 95

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLAD 327
              ++  N+   ++  + +  G   F++ AE+     S      LG+F K  +      D
Sbjct: 7   ARHILIDNEDICNQVKEQIISGDLDFVEAAEQYSLCPSGDQGGELGTFGKGQMVK-EFED 65

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +FS A  G+    +   FGY +  V++  
Sbjct: 66  VVFS-APVGEIQGPVQTEFGYHLIEVTSRN 94


>gi|220919567|ref|YP_002494871.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219957421|gb|ACL67805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 354

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
             + +  A      A L ++++++K  Y  P   R++ I+++                  
Sbjct: 111 FQDANGAAAEALPEADLQKYYDEHKAEYYRPRRVRLAAIVWNAPA--------------- 155

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD----ISL 312
                    SPE           +  A    +  K    F QL  E  +          L
Sbjct: 156 --------GSPERAAKV--ALAKKALAKLKAEEKKNTLAFAQLVNEFSEDAVSKATAGDL 205

Query: 313 GSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
           G  S+E +        AD  F+L + G  + V+  +    +   +  +     +F++VK 
Sbjct: 206 GFKSREDLEKAYSKEFADVTFNL-QPGATSGVLETANAVYLVKGTGEQDELNRTFEQVKA 264

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            I  ++   K +++     K+L +      S+DE +   
Sbjct: 265 QIQTKLYREKKTKEFDGWLKKLRDDAK--VSIDEKALEA 301


>gi|227508896|ref|ZP_03938945.1| peptidylprolyl isomerase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227191657|gb|EEI71724.1| peptidylprolyl isomerase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 295

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 15/160 (9%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            + +   L      +   + + D L+ +++  + K       TV Q++   +  A +   
Sbjct: 106 KRNLKEDLLLRAAIKADTKFTPDMLKQQFKHYQPK------VTVNQILVSKKATAQKVIN 159

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTP-VI 342
            L  G  F +LA       +            +     D +   + F L K G +T   +
Sbjct: 160 QLNAGHSFAKLAAAYSTDTATKKKSGRISPFDNTNTTLDPNFKKAAFKL-KTGQYTKTPV 218

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
              +GY +  +  +      ++Q  K+ + NQ+  TKA++
Sbjct: 219 KTQYGYEVIQM--VNHPAKGTYQNHKEALKNQIVDTKAAD 256


>gi|114778306|ref|ZP_01453165.1| peptidyl-prolyl cis-trans isomerase C1 [Mariprofundus ferrooxydans
           PV-1]
 gi|114551408|gb|EAU53964.1| peptidyl-prolyl cis-trans isomerase C1 [Mariprofundus ferrooxydans
           PV-1]
          Length = 99

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 9/87 (10%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
            + ++   + EA+     L  G  F  LA +     S      LG      +    + + 
Sbjct: 13  AKHILVKTKAEAEALKVRLAGGADFAALARKYSLCPSKKRGGDLGEIYPGQLV-RPIENV 71

Query: 329 IFS--LAKKGDFTPVIHGSFGYVIAHV 353
           IF   L K       +   FGY +  V
Sbjct: 72  IFKQPLLK---LHGPVKSQFGYHLVIV 95


>gi|261209199|ref|ZP_05923591.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           TC 6]
 gi|289566116|ref|ZP_06446551.1| foldase prsA [Enterococcus faecium D344SRF]
 gi|260076745|gb|EEW64480.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           TC 6]
 gi|289162061|gb|EFD09926.1| foldase prsA [Enterococcus faecium D344SRF]
          Length = 328

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 32/270 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +  D+  M  G +  S+   +       ++     I+    +       ++  +   ++K
Sbjct: 30  TNKDIATMKGGTITVSDFYDEAKLESSNQSLVQRMIIYKVFNNKYGDKVTDKQVDAEYDK 89

Query: 220 YKDN-------------YRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              +             Y    YK  I   L      +  ++I++D+L+  ++       
Sbjct: 90  QAKSLGDTFESQLEAAGYTKDTYKEYIRNNLAFEAGLKAHVDITDDDLKTAWKSFHP--- 146

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIP 321
                  + +   ++ EA +  +S   G  F +LA+++         G   K        
Sbjct: 147 ---EVEAQIIKLSSEDEAKDVKKSADDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTI 203

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSF------GYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              + ++ F L K G+ + VI  +        Y +  +   +        + K  + +  
Sbjct: 204 PAEVKEAAFKL-KDGEISDVITTTNPTSYATEYYVVKMVKNQNKGN-DMDKYKDQLKDIA 261

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEIS 405
             TK S+         EE       + + +
Sbjct: 262 TETKLSDNAFTTKVIGEELKDANVKIKDDA 291


>gi|257069381|ref|YP_003155636.1| SurA-like protein [Brachybacterium faecium DSM 4810]
 gi|256560199|gb|ACU86046.1| SurA-like protein [Brachybacterium faecium DSM 4810]
          Length = 269

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 5/151 (3%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
             V +V  + +    F   +  E       +      E      L +++ + LV    L 
Sbjct: 75  DVVATVNGEDISKDEFTQIY--ESQFQQMAMQQQSTGEEVDQAALKQQVAEQLVDNHLLL 132

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q   + G+E     +   +        ++   S D  VS L ++G++E++  +       
Sbjct: 133 QGASEAGIEPTDEDIDATLEEIAQ---QNGLGSADEVVSTLEQQGMSEEDVREDAASQHM 189

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
            T  +        PS   L        E +S
Sbjct: 190 LTAYIEQEADIEEPSEEELQAQYDQLVEQQS 220


>gi|265754204|ref|ZP_06089393.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
 gi|263234913|gb|EEZ20468.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
          Length = 427

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 53/143 (37%), Gaps = 16/143 (11%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLV------------FPNQKEADEAFQSLKKGKKFI 297
              ++  Y +++++  + +   +  +                 ++ D  + +L+ G  F 
Sbjct: 84  EQTVRQLYLRSEQRLQTNDWIRIAHISKYLPQNVGRQDELRVLQQMDSVYAALQGGADFS 143

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHGSFGYVIAHVSN 355
            LA       +  ++G        + ++ + I  LA  +K   +   +   G  I    +
Sbjct: 144 ALACRYSDDTTCKNMGGLLPWMPVNKNMQEWIDKLASLEKNKISAPFYSPMGIHIIKWID 203

Query: 356 IKPSFTVSFQEVKKDIANQMRIT 378
            KP   +SF+E ++ + N +   
Sbjct: 204 RKPG--ISFEEKREQLLNYLEKN 224


>gi|50122778|ref|YP_051945.1| peptidyl-prolyl cis-trans isomerase SurA [Pectobacterium
           atrosepticum SCRI1043]
 gi|81693097|sp|Q6D0E2|SURA_ERWCT RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|49613304|emb|CAG76755.1| survival protein [Pectobacterium atrosepticum SCRI1043]
          Length = 431

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 10/160 (6%)

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           NS  Q + + +Q+ G  +         L  +I D L+    + Q  + +G++    ++  
Sbjct: 43  NSLLQSVKLNAQQAGQQLP----DDATLRHQITDRLIMDNIILQMAQKMGIQVTDEQLDQ 98

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSN 176
            I          N+ S D   S+LA EG+N   Y     K +  ++V        +    
Sbjct: 99  AITNIAA----QNRMSIDQLKSQLANEGLNYNTYRSQIRKEMLISEVRNNEVRRRVTVLP 154

Query: 177 LLLDQAKR-FYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             +D   +    +    D + L++  +P   +P+   + +
Sbjct: 155 QEVDTLAKQIANQTGENDELNLSHILLPLPENPTQQQVDE 194



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 17/134 (12%)

Query: 271 TVEQLVFP---------NQKEADEAFQSLKKG-KKFIQ----LAEEQGKSLSDISLGSFS 316
               ++            Q +  +  Q +K G   F      L+++ G +     LG  S
Sbjct: 286 HARHILIKPSVVMTDSQAQAKLADVAQQIKNGSTDFAAQAKLLSQDPGSANQGGDLGWAS 345

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
            + + D +  D++  L KKG+ +  IH SFG+ +  + + +     +    K+     + 
Sbjct: 346 PD-MYDPAFRDALLKL-KKGEISQPIHSSFGWHLIQLLDTR-QVDKTDAAQKEQAYRMIF 402

Query: 377 ITKASEKVKEDYKR 390
             K +E+ +   + 
Sbjct: 403 NRKFAEEAQTWMQE 416


>gi|64213910|gb|AAY41234.1| putative peptidyl-prolyl cis-trans isomerase [Gossypium hirsutum]
          Length = 143

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA++ L+ G           +F ++A+E  +  S      LG F +
Sbjct: 45  KARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKVAQEYSECPSGKKGGDLGWFPR 104

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      +  F+    G  +     + GY I      K
Sbjct: 105 GKMAGP-FQEVAFN-TVIGATSAPFKSTHGYHIILCEGRK 142


>gi|327307516|ref|XP_003238449.1| peptidyl-prolyl cis-trans isomerase [Trichophyton rubrum CBS
           118892]
 gi|326458705|gb|EGD84158.1| peptidyl-prolyl cis-trans isomerase [Trichophyton rubrum CBS
           118892]
          Length = 132

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF ++A E  +  +    SLG   +  + D +   + 
Sbjct: 43  VRHILCEKHSKKEEALEKLRAGVKFDEVAREFSEDKARQGGSLGWKVRGSL-DAAFEKAA 101

Query: 330 FSLAKKGDFTPVI---HGSFGYVIAHVSNIK 357
           + L      +P        FGY I  V   K
Sbjct: 102 YELEPSTTGSPKYVEVKTGFGYHIIMVEGRK 132


>gi|110639457|ref|YP_679666.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282138|gb|ABG60324.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 130

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 15/99 (15%)

Query: 271 TVEQLVFPNQ---------KEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKE 318
               ++ P +           A+     LK G+ F  LA + G         +LG F++ 
Sbjct: 30  EASHILTPAESPEQFENAQDTAEVIIAKLKNGESFSDLALQYGSDGTKTQGGNLGWFTRG 89

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +      DS ++         ++   FG  +  V+  K
Sbjct: 90  MMVQP-FEDSCYNATINKPL--IVKTQFGVHVVKVTGKK 125


>gi|92113460|ref|YP_573388.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
           salexigens DSM 3043]
 gi|91796550|gb|ABE58689.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
           salexigens DSM 3043]
          Length = 270

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 59/176 (33%), Gaps = 18/176 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-QKEADEAFQSLKKGKK---------- 295
           E S  + +  +  + E++  P    V  ++      +A+      + G+           
Sbjct: 92  EPSEADCRRFHAAHAERFSEPTRLRVRHILLAAAPDDAEARDTGYRLGETLITQLSECPE 151

Query: 296 -FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F + A+      S      LG  +        L  ++  LA  G     +   +G+ + 
Sbjct: 152 RFTEFAQRHSACPSKDKGGELGWLAPGQTV-PELDRALQHLA-TGLHARPLASRYGWHLV 209

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISR 406
            +   +    + +  V + + + +R       ++     LE+ +   G  +DE + 
Sbjct: 210 SLDAREEGRALPYDAVAERVRHSLREQATRRALRHYLLALEDDIGIQGFRLDEQAD 265


>gi|153000160|ref|YP_001365841.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS185]
 gi|160874787|ref|YP_001554103.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS195]
 gi|217973872|ref|YP_002358623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS223]
 gi|304409751|ref|ZP_07391371.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS183]
 gi|307304107|ref|ZP_07583860.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           BA175]
 gi|151364778|gb|ABS07778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS185]
 gi|160860309|gb|ABX48843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS195]
 gi|217499007|gb|ACK47200.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS223]
 gi|304352269|gb|EFM16667.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS183]
 gi|306913005|gb|EFN43428.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           BA175]
 gi|315267025|gb|ADT93878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS678]
          Length = 92

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
             T   L+  ++++     Q + +G  F Q+A       S      LGSF    +     
Sbjct: 3   QATARHLLVSSEEQCQALKQQILEGADFAQIARAHSSCPSGAQGGELGSFGPGMMV-REF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            + +FS     +    +   FG+ +  V++ 
Sbjct: 62  DEVVFSAPLN-EVQGPVKTQFGFHLLEVTSR 91


>gi|472835|gb|AAA17676.1| ORF1 [Lactococcus lactis subsp. cremoris]
          Length = 295

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 58/173 (33%), Gaps = 19/173 (10%)

Query: 214 TQWFEKYKDNYRAPE-------YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
            Q + +  D + +          + +          +K  ++S  +L+A ++  + K   
Sbjct: 90  KQQYGENFDAFLSQNGFSRSSFKESLRTNFLSEVALKKLKKVSESQLKAAWKTYQPK--- 146

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIPD 322
               TV+ ++  ++  A +    L  GK F  LA+      +    G            D
Sbjct: 147 ---VTVQHILTSDEDTAKQVISDLAAGKDFAMLAKTDSIDTATKDNGGKISFELNNKTLD 203

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            +  D+ + L         +  + GY +  +  I      +F   KK +   +
Sbjct: 204 ATFKDAAYKLKNGDYTQTPVKVTDGYEVIKM--INHPAKGTFTSSKKALTASV 254


>gi|167765432|ref|ZP_02437545.1| hypothetical protein BACSTE_03822 [Bacteroides stercoris ATCC
           43183]
 gi|167697060|gb|EDS13639.1| hypothetical protein BACSTE_03822 [Bacteroides stercoris ATCC
           43183]
          Length = 455

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 103/322 (31%), Gaps = 35/322 (10%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK---KIEISNDELQAEYEK--NKEK 263
           S   + ++F K     R    +     L     ++K   +I+++  E++  ++       
Sbjct: 112 SREKMEEYFNKTSSQIRETLRENAREGLKVQKMQQKLVGEIKVTPAEVRRYFKDLPQDSI 171

Query: 264 YFSPEIRTVEQLVFPNQKEADEAF----------QSLKKGK-KFIQLAEEQGKSLSDISL 312
            + P    V+ +    +   +E              + KG+  F  LA    +       
Sbjct: 172 PYIPTQVEVQIITQQPKVPLEEIENVKKRLRDFTDRITKGETSFSTLARMYSEDRGSAIR 231

Query: 313 GS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-VK 368
           G    FS   + D + A+  F+L      + ++   +G+ I  +   +     +    +K
Sbjct: 232 GGEIEFSGRGMLDPAYANVAFNLQDPNKVSKIVESEYGFHIIQLIEKRGDRIKTRHILLK 291

Query: 369 KDIANQ------MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
             I  +       R+   ++ ++      EE  ++ +   +      ++           
Sbjct: 292 PHIPEESLTAGMARLDSIADDIRNGKFSFEEAASVLSQDKDTRNNHGLLPNPNTNTSKFE 351

Query: 423 KDVKGKEVAAIPYKEQL--LFRVFGK-DDPLSKDHTVAL-----PDGSYMWVQIKESIPA 474
                 E+A +  K ++  +   F        K+  V +      +G    V   +    
Sbjct: 352 MQELPPEIAKVVDKMKVGEISEAFTMIPQKTGKEECVIVKLKSRTNGHKATVA-DDYQNL 410

Query: 475 RDRKLEEVLTDVKKDWKTVKTA 496
           ++  LE+   ++   W   K  
Sbjct: 411 KEIVLEKRRDEMLDKWIREKQK 432


>gi|237742522|ref|ZP_04573003.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 4_1_13]
 gi|256845859|ref|ZP_05551317.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 3_1_36A2]
 gi|229430170|gb|EEO40382.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 4_1_13]
 gi|256719418|gb|EEU32973.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 3_1_36A2]
          Length = 231

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 4/164 (2%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           Y+  +  +  +   I  D L+  YE+N+  Y  P+   ++ +   + ++A+E  + +   
Sbjct: 44  YLEREAAKIVENTNIEEDVLKKIYEENQSLYKYPKRVKIDTIFVKDLEKAEEILKEV-NL 102

Query: 294 KKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           K F +L E   E+G+    ++        I  V   + +    K       I    G+ I
Sbjct: 103 KNFNELKEKNDEKGQEAKGVTDEFLFITEIHPVIAEEILKEEGKNVIIKKAIPVQEGFHI 162

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            ++ +I+      F E ++ I   ++     +   +  + +   
Sbjct: 163 LYLKDIEDERQAIFDEAREAILADVKRNIFGQVYNQLIQDIANE 206


>gi|329120542|ref|ZP_08249206.1| hypothetical protein HMPREF9123_2637 [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327461281|gb|EGF07613.1| hypothetical protein HMPREF9123_2637 [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 248

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 10/159 (6%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           Y        E    +S++EL+A Y +            ++Q+ FP++ EA +A Q L KG
Sbjct: 93  YAEQYAKHLEAAAAVSDEELRAAYAEQTRA------VKLQQVGFPSEAEALQAQQLLLKG 146

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGYVIAH 352
             F +L +       +   G  +   +P    A +  ++ ++G  +   +     Y +  
Sbjct: 147 LSFEELMKRHPNPAQEQLSGFVALAQLP-PEFAAAAATM-QRGQISHKPVAFQGSYYLLK 204

Query: 353 VSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           ++   +      F+E+K  IA  ++  KA E++    K 
Sbjct: 205 IAATEQAENAPPFEELKDQIAALLKQRKAQEQIATLLKA 243


>gi|291515480|emb|CBK64690.1| Parvulin-like peptidyl-prolyl isomerase [Alistipes shahii WAL 8301]
          Length = 463

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 54/466 (11%), Positives = 131/466 (28%), Gaps = 98/466 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  VG   + +S   + + ++L    ++ G+  + +         + L+ L++   L
Sbjct: 23  DKVVAVVGGSSILYSEVDD-YARQLTEQRRQEGYTSDRDPM------NEALEALMTQKLL 75

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               +   ++ +   +   +                                 +   +M+
Sbjct: 76  YNQAQIDSVKVNDADIMARV--------------------------------EEQVQQMV 103

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
                +             + +  R  +E ++  Y       V          + ++++ 
Sbjct: 104 EAEGSIPQLEAKHHMPIFNIREIMRQRYEEQA--YANSMQTEVVDKVSVIPGEVERFYK- 160

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                       IS     +        +++  + A+  K  +   + + RT E+L+   
Sbjct: 161 -----------SISKDSLPL--------VADQYVYAQITKFPKSMTAAKQRTRERLI--- 198

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI---PDVSLADSIFSLAKKG 336
               D   + +    KF  LA    +    +  G           D +   +     + G
Sbjct: 199 ----DMRERVITGKAKFENLARMYSQDPGTMMRGGEMDPSTLEQLDPAFG-AALEKMRPG 253

Query: 337 DFTPVIHGSFGYVIAHVSNIK--------------------PSFTVSFQEVKKDIANQ-M 375
             + V+   FG+ I  + + +                         +   + K I    +
Sbjct: 254 QISEVVESQFGFHIIQLLDKRGRLYHFRHILLRPVYTTEELGGSLNTLDSLVKVIRKDSI 313

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
              +A+    +D +   +      S  +I  R       L +  F  +D    +      
Sbjct: 314 TFERAALLYSDDAQS--KMNGGIVSNHDILERFNAFDAKLTVTKFLKEDFGRFKSLDDYN 371

Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
               L      +  L++D    L +     V++ E IP     L E
Sbjct: 372 ALNRLKPGEISEAYLTED---MLGNQMAKIVKLVEVIPTHTASLNE 414


>gi|241668931|ref|ZP_04756509.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877463|ref|ZP_05250173.1| peptidyl-prolyl cis-trans isomerase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254843484|gb|EET21898.1| peptidyl-prolyl cis-trans isomerase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 470

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/413 (12%), Positives = 128/413 (30%), Gaps = 71/413 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           + TV  V  + +           E+           +S  + S+ + ++ L +L++ + L
Sbjct: 53  NKTVAIVNSKPITSFELDQ----EVAKFEAMNPN--SSFHSDSLQIRREALQDLIAQSVL 106

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E   +   + ++   I          N  S +     +   G++ + Y     + L
Sbjct: 107 LQLAERNNIIISNQQLDAAIKDIAA----KNGVSVESLKLNVEASGMSFESYKKRIREQL 162

Query: 160 SRT-DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN-----------NRHVPAIAD 207
             +          +  S   + +  + + E    +   +                 A   
Sbjct: 163 MVSQLQQQAISQQVYVSPEEIQKYIKKHQEQFDREMAPIKLYTLKNLIVALPDSKKARQK 222

Query: 208 PSN-----------------AVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKK 245
             +                  V+ Q+ +     Y     +  ++  I  +  D  +  K+
Sbjct: 223 KIDLFKKLAIAVNKGYIDFSEVVKQFSQAPNATYGGIVSQQVKFDSIPSMYRDYVKDLKE 282

Query: 246 IEISN-----DELQAEYEKNKEKYFSPEIRTVEQ-----LVFP-----NQKEA----DEA 286
            ++S        LQ  Y  N ++      + V +     +         ++ A    D A
Sbjct: 283 HQVSEPFIVNHTLQMIYIDNIDEKAPMLSKKVTKYYVYAIEIKLDGGMTEEGAKSSLDRA 342

Query: 287 FQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVI 342
             +++ G+ F ++A +  +     +      S+   P      +   L   K+G+ +   
Sbjct: 343 RLAIESGQDFTKVALKYNQDYDHANGKFRWVSRLDSPPAIPPAAFAKLETMKEGEVSEPF 402

Query: 343 H-GSFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEE 393
                 ++I   + +K       +E+K+  A   +   KA E  K     +++
Sbjct: 403 QADPKTWMIMKYTKVKEHDAA--EELKEQKALEAIFSEKAQEVYKTWLTSMKD 453


>gi|116786570|gb|ABK24159.1| unknown [Picea sitchensis]
          Length = 142

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA++ L+ G           +F ++A E  +  S      LG F +
Sbjct: 44  KARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKVAAEYSECPSGKKGGDLGFFPR 103

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      +  F+    G  +     + GY I      K
Sbjct: 104 GKMAGP-FQEVAFN-TPVGATSAPFKSTHGYHIILAEGRK 141


>gi|254373986|ref|ZP_04989468.1| peptidyl-prolyl cis-trans isomerase [Francisella novicida
           GA99-3548]
 gi|151571706|gb|EDN37360.1| peptidyl-prolyl cis-trans isomerase [Francisella novicida
           GA99-3548]
          Length = 469

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 54/486 (11%), Positives = 141/486 (29%), Gaps = 94/486 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQ-KIGFVVNSERARSVGLDKKILDNLVSGAT 98
           + TV  V  + +           EL  +   +     N++  +   L ++ L +L+S + 
Sbjct: 52  NKTVAIVNSRPITSFELDQ----ELAKLEAMQPNSAFNTDPLK---LKRQALQDLISQSV 104

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L Q  E   +   + ++   I          N  S +     +   G++   Y       
Sbjct: 105 LLQLAERNNITISNQQLDSAIQDIAA----KNGVSVESLKLNVEAAGMSFDSYKKRIRDQ 160

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L  + +                                   + +      S   + ++ +
Sbjct: 161 LMISQLQ---------------------------------QQAIAQQVYVSPEEIQKYIK 187

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           K++  +         Y L       K + ++  + +   +K  + +              
Sbjct: 188 KHQKEFDREMSPVKLYTL-------KNLIVALPDSKKARQKKIDLF-------------- 226

Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKK 335
                 +   ++  G   F ++ ++  ++ + +S G  S++   D    +        K 
Sbjct: 227 -----KKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKN 281

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK----DIANQMRITKASEKVKEDYKRL 391
              +     +    + ++ NI     +  ++V K     I  ++  +   E  K   +R 
Sbjct: 282 HQVSQPFIVNHTLQMIYIDNIDEKAPILSKKVTKYYVYAIEIKLDGSMNEEGAKSSLERA 341

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
           +  +  G    +++ +              G      E+ + P      F    +     
Sbjct: 342 KLAIESGQEFTKVALKYNQ-----DYDHPNGNFRWVSELDSPPSLPPAAFAQLKQLKENE 396

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV-SSKANQLVLEY 510
                     ++M ++  ++             D  +  K  K  E + S KA ++   +
Sbjct: 397 LSEPFQADGRTWMIIKYTKTKE----------YDAAEQLKEQKALEAIFSEKAQEIYKTW 446

Query: 511 SKEGKN 516
               K+
Sbjct: 447 LTSMKD 452


>gi|32475679|ref|NP_868673.1| hypothetical protein RB9030 [Rhodopirellula baltica SH 1]
 gi|32446221|emb|CAD76050.1| hypothetical protein-transmembrane prediction [Rhodopirellula
           baltica SH 1]
          Length = 827

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 98/302 (32%), Gaps = 59/302 (19%)

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL--------------EEFLALGTS--- 400
            +    F++V+  IA +M    A +K+ +    +              E  +A+G S   
Sbjct: 500 ETKPQPFEDVRDQIATEMVSETARQKLDQTITEVYGLMRDYFSEMAVHEGNVAVGVSDES 559

Query: 401 -------MDEISRREKIVSIDLPLVDFA--GKDVKGKEVA--------AIPYKEQLLFRV 443
                  +  I+ ++ +      LV+    G D  G+             PY   +    
Sbjct: 560 DAPKRPDLKAIADQKGLGYGTTGLVNRVSIGDDPIGESYGLGQSLQRRGAPYYAMMFGAA 619

Query: 444 FG------KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
                        S   +V L +         E I A   +LEEV  +V    +T +   
Sbjct: 620 MQDGSSIPSQPEFSPQRSVDLENAKSYVSWKTEDIEAYTPELEEVRDEVILAIRTQEARN 679

Query: 498 EVSSKANQLVLEYSKEGKNFRDI-----GKNLGASLLTTNQIN---------RMDNENKF 543
            ++ KA + + E   +GK   D        NL   L     +N             E   
Sbjct: 680 -LAQKAAEGIAEAIGQGKKLADAIPKGKEANLHTDLGPFTWLNMVGMMQTSLGNVPELNA 738

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS----YLTQMMN 599
            G + +  VFS  V  VK  P      Y V +    +    Q +++F      ++ Q++ 
Sbjct: 739 VGNEFMQSVFSTEVGSVKVAPNAPQSVYYVVQPIEFQPEVEQLREQFSQPQQRFMAQLIG 798

Query: 600 KD 601
            D
Sbjct: 799 DD 800



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 100/278 (35%), Gaps = 52/278 (18%)

Query: 30  LSDALFSVSGSS---TVVSVGRQKVPFSSFINSWKQELGMIS----------------QK 70
           L   L    GS+    V       +  S    + +Q   ++                 Q 
Sbjct: 67  LDTYLRRGGGSNSDPVVAEYDGVTLTQSRVARTTQQHRAVVGFLSDLGQETIRRGGVPQV 126

Query: 71  IGFVVNSE--RARSVGLDKK-ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
            GF  + E  + +S+G+D     +  ++        +  G + D   V   ++       
Sbjct: 127 PGFQYDQESGQIQSIGIDANPSEEATINTMRFYSEAKKAGFQLDDTMVRTWLS-----RY 181

Query: 128 KDNKFSHDVFVSRLAR---EGINEKEYIDHYT----KMLSRTDVVGMFVGGMRPSNLLLD 180
            D   S +   S L +     +   +  +         L +   +   + G  P +  L 
Sbjct: 182 TDGLLSDNEIGSMLMQFTKNQMGPIQLYEQLRMHLLADLYQRSAMVGLMNGRLPVSTPLA 241

Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIAD--PSNAVLTQWFEKYKD------------NY 224
           Q + F    ++ +++   +         D  PS + +T+ +E  KD             +
Sbjct: 242 QWRNFLKTNQSATINAYGVLVEEYIDQTDESPSKSQITEVYEAGKDLLAYPNDQDPEPKF 301

Query: 225 RAPEYKRISYILFDVHEK--EKKIEISNDELQAEYEKN 260
           R P+  +I Y++ D++E    +K ++S+++++AEYE+ 
Sbjct: 302 RRPDSAKIEYLVADLNEFVEREKAKLSDEQIRAEYERR 339



 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           +    ++T   +EV+ ++   +R  +A    ++  + + E +  G  + +   + K  ++
Sbjct: 651 TEDIEAYTPELEEVRDEVILAIRTQEARNLAQKAAEGIAEAIGQGKKLADAIPKGKEANL 710

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQL-------LFRVFGKDDPLSKDHTVALPDGSYMWV 466
              L  F   ++ G    ++    +L       +  VF  +    K    A P   Y  V
Sbjct: 711 HTDLGPFTWLNMVGMMQTSLGNVPELNAVGNEFMQSVFSTEVGSVKVAPNA-PQSVYYVV 769

Query: 467 QIKESIPARDRKLEE 481
           Q  E  P  ++  E+
Sbjct: 770 QPIEFQPEVEQLREQ 784


>gi|218261362|ref|ZP_03476209.1| hypothetical protein PRABACTJOHN_01875 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224050|gb|EEC96700.1| hypothetical protein PRABACTJOHN_01875 [Parabacteroides johnsonii
           DSM 18315]
          Length = 226

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 14/135 (10%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
              +   FL    S + +       V  V  + +    F +   +   M   + G     
Sbjct: 23  FAFIIGDFL---NSGSTYFRQSQEKVAEVDGEVIKIQEFQDRVDEMTEMYKMQTGSTSLP 79

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---------EIARSPLFHGK 128
           E      + + + D +V    L++   ++G+      ++           I +  +F   
Sbjct: 80  EE-YQTQIRQSVFDGMVQDIVLNEATSELGMGVGPEELFDMVQGENISPMIQQMQMFVNP 138

Query: 129 -DNKFSHDVFVSRLA 142
               F     ++ L 
Sbjct: 139 QTGAFDKTALLNFLK 153


>gi|160913548|ref|ZP_02076239.1| hypothetical protein EUBDOL_00024 [Eubacterium dolichum DSM 3991]
 gi|158434100|gb|EDP12389.1| hypothetical protein EUBDOL_00024 [Eubacterium dolichum DSM 3991]
          Length = 334

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 76/219 (34%), Gaps = 24/219 (10%)

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFSPEIR 270
            L ++     +    P       +        K  ++++D ++A  +    + Y + + R
Sbjct: 117 DLKEYINAQLN----PLGYDYDTLDEYAMLAVKMNKLTSDYVKAHLDTLFTDYYNAKQPR 172

Query: 271 TVEQLVFP----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFS 316
           TV  ++             +++ ++  + L  GK F ++A++             LG   
Sbjct: 173 TVSHILIKMADSQNPTEEEKEKIEKVEKELAAGKDFAEVAKKYSDDTGSKENGGYLGLMD 232

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSF----GYVIAHVSNIKPSFTVSFQEVKKDIA 372
           K+     S  ++ F L K G+ +  +        G+ +  V        +  ++++  I 
Sbjct: 233 KDTQYVESFKNAAFKL-KSGEVSEWVKEDNSSYKGWHMIKVHETDKDKLLKDKDLEDTIV 291

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
           N +  +  S           + L +  +  ++  + K  
Sbjct: 292 NAILNSDTSNAYGNAIWEASKKLDIKYNDKDLEAQIKAS 330


>gi|156845787|ref|XP_001645783.1| hypothetical protein Kpol_1010p41 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116451|gb|EDO17925.1| hypothetical protein Kpol_1010p41 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 164

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 29/153 (18%)

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN------------KEKYFS 266
           K ++ +  PE K          + E    +  D+L++  E +             ++   
Sbjct: 19  KKREYFFNPETK--------ASQWEAPEGVDEDKLRSFLETHPLRVRCLHLLIKHKESRR 70

Query: 267 PEIRTVEQLVFPNQKEADEA---FQSLKKGKK-FIQLAEEQGKSLS---DISLGSFSKEY 319
           P     E +    ++  +E     + LK     F +LA+E+    S      LG F K  
Sbjct: 71  PASHRSEDITISKEEAIEELKGYQEKLKNDPTLFEELAKERSDCSSFKRGGDLGYFGKGE 130

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           +   S   + F L K  + + ++    G  +  
Sbjct: 131 M-QPSFEKAAFKL-KINEISDIVESDSGVHLIK 161


>gi|104781925|ref|YP_608423.1| hypothetical protein PSEEN2850 [Pseudomonas entomophila L48]
 gi|95110912|emb|CAK15628.1| conserved hypothetical protein; putative signal peptide
           [Pseudomonas entomophila L48]
          Length = 213

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 7/150 (4%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            + V  V   ++        + + L    + +  + N    +   L ++ LD L+    L
Sbjct: 19  EAPVARVNGVEIGALRLERYFTEYLQAQGRAVASIRNPNLYQR--LREQALDELIDKELL 76

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q     G+  D  +V   +A      G     S  VF  RL   G +   + D+    +
Sbjct: 77  WQEARRQGIAIDDEQVRARVAEVEAAFG-----SPAVFARRLEDAGFDHDSFADYTRHEM 131

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           +  +          PS   +        + 
Sbjct: 132 AAQEAFARLTVVEEPSAAEIAAFYDANRQR 161


>gi|294784959|ref|ZP_06750247.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 3_1_27]
 gi|294486673|gb|EFG34035.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 3_1_27]
          Length = 227

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 4/164 (2%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           Y+  +  +  +   I  D L+  YE+N+  Y  P+   ++ +   + ++A+E  + +   
Sbjct: 40  YLEREAAKIVENTNIEEDVLKKIYEENQSLYKYPKRVKIDTIFVKDLEKAEEILKEV-NL 98

Query: 294 KKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           K F +L E   E+G+    ++        I  V   + +    K       I    G+ I
Sbjct: 99  KNFNELKEKNDEKGQEAKGVTDEFLFITEIHPVIAEEILKEEGKNVIIKKAIPVQEGFHI 158

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            ++ +I+      F E ++ I   ++     +   +  + +   
Sbjct: 159 LYLKDIEDERQAIFDEAREAILADVKRNIFGQVYNQLIQDIANE 202


>gi|289620047|emb|CBI53491.1| unnamed protein product [Sordaria macrospora]
          Length = 130

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA   ++ G  F  +A E  +  +    SLG   K  + D       
Sbjct: 41  VRHILCEKHGKKEEALAKIRDGADFGAVAREYSEDKARTGGSLGWKQKGTL-DPEFERVA 99

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           F+L +               FGY I  V   K
Sbjct: 100 FAL-ETSTTGKPQIGEAKTPFGYHIIMVEGKK 130


>gi|282880885|ref|ZP_06289578.1| PPIC-type PPIASE domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305267|gb|EFA97334.1| PPIC-type PPIASE domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 489

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 91/267 (34%), Gaps = 46/267 (17%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP-----------SNAVLTQWFEKYKDNYRAP-- 227
             ++ +     +D + +    V A  +            S   L  +  +     R+   
Sbjct: 94  AVQKLFLHQAELDSVEIPEAQVTASIERQINRWIEMAGGSAERLEAYRGQTISQMRSQLR 153

Query: 228 -EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY--FSPEIRTVEQLVFPNQKEAD 284
            +++    +     +  + ++++  +++A ++        F P    VE +    +   +
Sbjct: 154 DDFRNNLLVQNMQEKLVQDVKVTPSDVRAYFKDLPADSIPFVPTEVEVEIITRKPKILPE 213

Query: 285 EA----------FQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSI 329
           E              +  G+  F  LA    E+ G +     +    +  + D   A+  
Sbjct: 214 EINRVKNELRNFTNRVTSGETSFATLARLYSEDPGSARQGGEMDYMGRGML-DPDFANVA 272

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV----------SFQEVKKDIANQMRITK 379
           F+L      + ++   FGY I  + + +               S +EV+K +   +R+  
Sbjct: 273 FNLTDPKKISKIVETEFGYHIIQLIDKRGDKIKVRHILLKPKVSDEEVQKVL---VRLDS 329

Query: 380 ASEKVKEDYKRL-EEFLALGTSMDEIS 405
            + +++ D  RL  +  A   S  E +
Sbjct: 330 VATELRADTFRLSSDQHAPSLSFGEAA 356


>gi|89885882|ref|YP_516080.1| hypothetical protein Rfer_4396 [Rhodoferax ferrireducens T118]
 gi|89347880|gb|ABD72082.1| hypothetical protein Rfer_4396 [Rhodoferax ferrireducens T118]
          Length = 274

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 64/162 (39%), Gaps = 4/162 (2%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E + +S + F    + +   +S+ E+   Y++N               +    ++A +  
Sbjct: 109 EREVLSNLYFSRIGEREVKGVSDAEIDQFYQRNLSD-SMFARIGASYFLSATDEDATQFA 167

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             L++G K      +   + +  ++     ++  D+     +    K G+ +  +    G
Sbjct: 168 LKLREGDKEAAAKLKPFLNPAGKAIAFAPADFPYDMG---KLIQTMKVGEVSGSLATRNG 224

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           + +  V  + P    + +E+K+ + + +   +  EK+++  K
Sbjct: 225 FFVVRVDEVVPGKRPAIKEIKEQLRSALVNQRVGEKLQQLRK 266


>gi|17547900|ref|NP_521302.1| signal peptide protein [Ralstonia solanacearum GMI1000]
 gi|17430206|emb|CAD16969.1| putative peptidyl-prolyl isomerase signal peptide protein
           [Ralstonia solanacearum GMI1000]
          Length = 281

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 66/236 (27%), Gaps = 27/236 (11%)

Query: 159 LSRTDVVGMF-VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
           +++  +       G + +  +    K+              N     +     A      
Sbjct: 44  ITQEQLDRAIAQSGAQANPQVAQALKQQLIARELFRQQAAKNPAYDKLPAVKQA------ 97

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
                     E          + +  K   I+ ++++A Y+         E +    +  
Sbjct: 98  --------MQEAHDAVITQAWLKDNIKPAPITEEQVKARYDAIVASLGDKEYK-ARVIQL 148

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLA 326
            +   A +    LK+G  F +LA++   + + +  G              K     + LA
Sbjct: 149 GDDVTAAQVLAQLKQGGDFAKLAQQYSTAPNKVRGGDMDWVSFKVPVEEGKTQNLPLPLA 208

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             I +L      T  +       I  V   +P+    +  V+  I   +   +   
Sbjct: 209 REIAALGIGAASTAPVEVGSQRYIVKVEAARPTQVPGYDTVRPAIRQALETAELER 264


>gi|260591262|ref|ZP_05856720.1| putative peptidyl-prolyl cis-trans isomerase [Prevotella veroralis
           F0319]
 gi|260537127|gb|EEX19744.1| putative peptidyl-prolyl cis-trans isomerase [Prevotella veroralis
           F0319]
          Length = 474

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 16/224 (7%)

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
            DY+ L   +   +    +A L      +K  +     ++I        + EK       
Sbjct: 57  ADYVDLFINYKLKVQAALDARLDTL-SSFKQEFLTYRDQQIRPSFLTNSDIEKAARDIYQ 115

Query: 252 ELQAEYEKNKEKY------FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           E +   E N   +           R  ++     +  AD  + +L+ G  F +LA++   
Sbjct: 116 ETKESIEANGGLWCCAHILVGLNQRATKEEELKAKVLADSIYNALQHGANFGELAKKYSA 175

Query: 306 SLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                  G       K          ++ +L K G+ +      +GY I  +   +    
Sbjct: 176 DRESAQNGGELPLLQKGQTV-QEFEHAMLAL-KPGEMSKPTLSPYGYHIIKMIAHE--GL 231

Query: 362 VSFQEVKKDIANQMRITKASEKVKE-DYKRLEEFLALGTSMDEI 404
             +  +   I   + +    +++ +     L +    G + +++
Sbjct: 232 APYDSLHARILQFIEMRGLRDQIVDKKLDSLVQQAGKGVTREQL 275


>gi|332298394|ref|YP_004440316.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Treponema
           brennaborense DSM 12168]
 gi|332181497|gb|AEE17185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Treponema
           brennaborense DSM 12168]
          Length = 511

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/502 (9%), Positives = 119/502 (23%), Gaps = 107/502 (21%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVP--FSSFINSWKQELGMISQKIG 72
           + L++  V F+   +   +              ++ +     S+  S  Q      +  G
Sbjct: 32  LILILAAVSFIF--IPAMVQGSGTELPPFGRFNKKPIEYKTGSYFASMVQYYSEQMKNNG 89

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
             ++        +      + V      Q +E  G       +   +   P F+  +  +
Sbjct: 90  SQLDESA--YFSIFNTAFSSTVLNMAFTQAVEASGYIVPDAAIDRSML--PYFYDSNGVY 145

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG----------------GMRPSN 176
           S  +F                     ++   V   +                  G++ ++
Sbjct: 146 SPKIFRD-------TPDTDKIELRNQIANGLVYQRYYDDSFGSQSEALGDSPLYGIKTAS 198

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
                 +R     RS +Y        P            W  +  D +            
Sbjct: 199 AETPFLQRMGERQRSFEYAAFKTADYPRT------EAAAWGMQNPDLFTK---------- 242

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
                               Y+             +  +   ++  A +  + L+  +  
Sbjct: 243 --------------------YD-------------MSVVSVSDENTAKKLLKQLQNNELV 269

Query: 296 FIQLAEEQGKSLSDISLGSFS-------KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           F     E  ++    + G          K  + D    + +  L + G  + VI    G+
Sbjct: 270 FEDAVAEYSRNYYSSTDGKVVNSYRYQLKSIMKDEQSLNELTGL-EPGAISGVIPTVNGF 328

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMR-----ITKASEKVKEDYKRLEEFLALGTSMDE 403
            I  ++   P+    F +    I               E+   D  +    +A  +  D 
Sbjct: 329 SIFKLNA--PAVDADFTD-SAMIETVYSYMNSYEAGVIERYYVDTAKDFAAVATRSGFDA 385

Query: 404 ISRREKIVSIDLPLVDFA--------GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
              +  +    L                      +A     +  L   F           
Sbjct: 386 ACAQYGLTKGALDAFPLNYNDNPLLKTMSAADTALAGASLNDNFLKTAFSMQKD-EISSP 444

Query: 456 VALPDGSYMWVQIKESIPARDR 477
           + +     +    +E     ++
Sbjct: 445 IVVNKNVIVLKMTEEITVPAEQ 466


>gi|257888119|ref|ZP_05667772.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,141,733]
 gi|257896990|ref|ZP_05676643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com12]
 gi|257824173|gb|EEV51105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,141,733]
 gi|257833555|gb|EEV59976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com12]
          Length = 340

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 99/316 (31%), Gaps = 51/316 (16%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +  D+  M  G +  S+   +       ++     I+    +       ++  +   ++K
Sbjct: 30  TNKDIATMKGGTITVSDFYDEAKLESSNQSLVQRMIIYKVFNNKYGDKVTDKQVDAEYDK 89

Query: 220 YKDN-------------YRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              +             Y    YK  I   L      +  ++I++D+L+  +E       
Sbjct: 90  QAKSLGDTFESQLETAGYTKDSYKEYIRNNLAFEAGLKAHVDITDDDLKTAWESFHP--- 146

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIP 321
                  + +   ++ EA +  +S   G  F +LAE++         G   K        
Sbjct: 147 ---EVEAQIIKLSSEDEAKDVKKSADDGDDFSKLAEDKSTDSETKEDGGKVKFDSTTTTI 203

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
              + ++ F L K G+ + V              I  + T S+                 
Sbjct: 204 PAEVKEAAFKL-KDGEVSDV--------------ITATNTTSY-----------ATEYYV 237

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
            K+ ++  +  +       + EI+   K+   +       G+++K   V       + + 
Sbjct: 238 VKMVKNQNKGNDMDKYKDQLKEIATETKLSD-NAFTTKVIGEELKDANVKIKDDAFENVL 296

Query: 442 RVFGKDDPLSKDHTVA 457
             F      +KD + A
Sbjct: 297 SAFTTTSSGAKDSSEA 312


>gi|227552654|ref|ZP_03982703.1| peptidylprolyl isomerase [Enterococcus faecium TX1330]
 gi|293378656|ref|ZP_06624815.1| putative foldase protein PrsA [Enterococcus faecium PC4.1]
 gi|227178280|gb|EEI59252.1| peptidylprolyl isomerase [Enterococcus faecium TX1330]
 gi|292642696|gb|EFF60847.1| putative foldase protein PrsA [Enterococcus faecium PC4.1]
          Length = 336

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 99/316 (31%), Gaps = 51/316 (16%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +  D+  M  G +  S+   +       ++     I+    +       ++  +   ++K
Sbjct: 26  TNKDIATMKGGTITVSDFYDEAKLESSNQSLVQRMIIYKVFNNKYGDKVTDKQVDAEYDK 85

Query: 220 YKDN-------------YRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              +             Y    YK  I   L      +  ++I++D+L+  +E       
Sbjct: 86  QAKSLGDTFESQLETAGYTKDSYKEYIRNNLAFEAGLKAHVDITDDDLKTAWESFHP--- 142

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIP 321
                  + +   ++ EA +  +S   G  F +LAE++         G   K        
Sbjct: 143 ---EVEAQIIKLSSEDEAKDVKKSADDGDDFSKLAEDKSTDSETKEDGGKVKFDSTTTTI 199

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
              + ++ F L K G+ + V              I  + T S+                 
Sbjct: 200 PAEVKEAAFKL-KDGEVSDV--------------ITATNTTSY-----------ATEYYV 233

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
            K+ ++  +  +       + EI+   K+   +       G+++K   V       + + 
Sbjct: 234 VKMVKNQNKGNDMDKYKDQLKEIATETKLSD-NAFTTKVIGEELKDANVKIKDDAFENVL 292

Query: 442 RVFGKDDPLSKDHTVA 457
             F      +KD + A
Sbjct: 293 SAFTTTSSGAKDSSEA 308


>gi|309378643|emb|CBX22714.1| putative cell-binding factor [Neisseria lactamica Y92-1009]
          Length = 288

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 83/241 (34%), Gaps = 23/241 (9%)

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            +    +       ++  + KR   +          +     +     A   +  +  K 
Sbjct: 55  QLRRALLNQEITHTVVAQEVKRLKLDR---------SAEFKDMLAKLRAEAEKSGDDKKP 105

Query: 223 NYRAPEYKRISYILFDVH---EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +++      + Y L          K   +S  + +A Y+  +  Y   +   + +++   
Sbjct: 106 SFKTVWQ-AVEYGLNGRAYALHIAKTQPVSEQDAKAAYDNIRGFYKGTQEVQLGEILTDK 164

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD------SIFSLA 333
           +  A +A   LK  K F  + ++   +      G     Y+P   L              
Sbjct: 165 EDNAKKAVAGLKAKKGFDAVLKQYSLNDHTKQTGK-PDGYVPLKDLEQGVPPLYQAIKDL 223

Query: 334 KKGDF--TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           KKG+F  TP+ +G F Y + +V++ +     SF E+K+ +   ++  +    V     + 
Sbjct: 224 KKGEFTATPLKNGDF-YGVYYVNDRRDVKVPSFDEMKEQLTGDLQAERIDRAVGALLDKA 282

Query: 392 E 392
           +
Sbjct: 283 D 283


>gi|293400822|ref|ZP_06644967.1| putative foldase protein PrsA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305848|gb|EFE47092.1| putative foldase protein PrsA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 333

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 112/420 (26%), Gaps = 134/420 (31%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS------VSGSSTVVSVGRQKVPFS 54
           M++ +    + W   + + ++F+ F ++ + D           +G   + ++  + +   
Sbjct: 1   MIDTL---KKQWFV-VLIALIFIGFTVFIIYDTNKGKLPGKSENGKDVIATINGKSISAD 56

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
              +S            G  +   R ++  +D+ +                         
Sbjct: 57  DLYDSM------YKSNGGNTLLYLRFQAAVIDESV--------------------KSTDE 90

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +                                     D   + L+          G   
Sbjct: 91  IEKT---------------------------------ADQLKEYLNSNAQNQASSSGQSA 117

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
              L  +  ++ F+   +DY       +  +          + +K+ +    P       
Sbjct: 118 EEYLKTELAKYGFQEDELDYFCNVQAKMSKMQ-------KDYIDKHMEELFTP------- 163

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--- 291
                                 YEKNK        RTV  ++   +   +   + +K   
Sbjct: 164 ---------------------LYEKNKG-------RTVSHILVKMKDANNPTEEEMKTVK 195

Query: 292 ------KGKKFIQLAEEQ------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                 K   F ++A++         +     LG          S       + KKG+ +
Sbjct: 196 AIEKDLKTMSFAEVAKKYKDKGDTSSAEKGGFLGYMDSTTGFVDSFKKQALKM-KKGEVS 254

Query: 340 P-VIHGS---FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI---TKASEKVKEDYKRLE 392
             V   +    G+ +  V        +  ++ K  I + +       AS+ + E  K+L+
Sbjct: 255 NWVKESNDNYNGWHMIKVEETDKDAILKDKKAKDSIYSAIENANSDLASKYISEAMKKLD 314


>gi|225075434|ref|ZP_03718633.1| hypothetical protein NEIFLAOT_00439 [Neisseria flavescens
           NRL30031/H210]
 gi|224953252|gb|EEG34461.1| hypothetical protein NEIFLAOT_00439 [Neisseria flavescens
           NRL30031/H210]
          Length = 290

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 79/245 (32%), Gaps = 23/245 (9%)

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
              +ML+   V+   V       L LDQ+  F                         A  
Sbjct: 56  ELRQMLTERQVISTVV-TQEAKKLKLDQSAEFKTALEQAR------ADAAKQGADKKATF 108

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
              +  ++++     +              ++  +   +++A Y      Y   +   + 
Sbjct: 109 KTEWAVFENDLLGQAF---------AAHIVRQYPVQEKDVKAAYNDFSNFYKGTQEVQLG 159

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD------ 327
           ++V  +   A +A   L   K F+ +  +     +    G   K Y+P   L +      
Sbjct: 160 EIVTDSSSNAQKAIADLDAKKSFVSVLNQYSIDEAAKKAGGIPKAYVPLKDLQESAPPLY 219

Query: 328 SIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +     KKG  T   +     Y + +V++ +     S++  K +I + ++  +    ++ 
Sbjct: 220 AAVKDLKKGAHTKTPLQNGNLYAVFYVNDRRNVTVPSYETAKNEIGSDLQAARVDAAIQS 279

Query: 387 DYKRL 391
             K+ 
Sbjct: 280 LLKKA 284


>gi|256828005|ref|YP_003156733.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577181|gb|ACU88317.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 93

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDV 323
                  ++   ++      + + ++G  F ++A    +  S      LG+F    +   
Sbjct: 2   AKARARHILVATEEVCQALKKKITEEGGDFAEIARNYSQCPSGKRGGDLGTFGPGQMV-A 60

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
                 F+ A  G     +   FG+ +  V+  
Sbjct: 61  EFDQVCFNEA-VGVVHGPVKTQFGFHLVEVTER 92


>gi|255711148|ref|XP_002551857.1| KLTH0B01540p [Lachancea thermotolerans]
 gi|238933235|emb|CAR21419.1| KLTH0B01540p [Lachancea thermotolerans]
          Length = 161

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAF---QSLKKGKKFIQLAEEQGKSLS---DISL 312
           K+K+    P     E +     +   E     Q L++G++F  LA E+    S      L
Sbjct: 62  KHKDS-RRPASHRSEHITLSKDEALQELAAYQQRLEQGERFEDLARERSDCSSFKRGGDL 120

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           G F++  +   +     F+L      +  +    G  +  
Sbjct: 121 GFFARGEM-QPAFESVAFALP-VSAVSAPVDTDSGVHLIK 158


>gi|284040908|ref|YP_003390838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
 gi|283820201|gb|ADB42039.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
          Length = 133

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 278 PNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
              +E    ++ LK G  F +LA    ++ G   +   LG   K  I        I  ++
Sbjct: 37  TANREIARLYRKLKAGYAFDKLALEYSQDYGSFTAGGKLGW-QKPDIFVPEFNQVISQMS 95

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           K   F+      FGY I  + + KP   ++
Sbjct: 96  KD-QFSKPFKTEFGYHIVQLLDKKPGEVLT 124


>gi|88705926|ref|ZP_01103635.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88699997|gb|EAQ97107.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 266

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 4/162 (2%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF-Q 288
           + +   L       +  E S  +L   Y  N E+Y++    +  Q VF +  E  EA  +
Sbjct: 97  RELIIELMQQRVTGEIAEPSPKDLVNFYADNIERYYTEASISFSQKVFASAPENPEALRE 156

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            L +G         QG    D  + S  +       L   I      G++        G+
Sbjct: 157 QLNQGGGQAGAVPWQGSDFPDYGV-SMVRGLFGQPLLE--ILQSLAFGEWQGPYESRQGW 213

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
               V+  +    + F+ V+  +    +    ++ V E    
Sbjct: 214 HYFRVTARRAPQLLPFERVRDQVLADYQAAAVAQAVAEFTDA 255


>gi|115315252|ref|YP_763975.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|169656704|ref|YP_001429113.2| hypothetical protein FTA_1682 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254368149|ref|ZP_04984169.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
           257]
 gi|115130151|gb|ABI83338.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253959|gb|EBA53053.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
           257]
 gi|164551772|gb|ABU62157.2| hypothetical protein FTA_1682 [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 475

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/326 (10%), Positives = 93/326 (28%), Gaps = 74/326 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQ-KIGFVVNSERARSVGLDKKILDNLVSGAT 98
           + TV  V  + +           EL  +   +     N++  +   L ++ L +L+S + 
Sbjct: 58  NKTVAIVNSRPITSFELDQ----ELAKLEAMQPNSAFNTDPLK---LKRQALQDLISQSV 110

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L Q  E   +   + ++   I          N  S +     +   G++   Y       
Sbjct: 111 LLQLAERNNIMISNQQLDSAIQDIAA----KNGVSVESLKLNVEAAGMSFDSYKKRIRDQ 166

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L  + +                                   + +      S   + ++ +
Sbjct: 167 LMISQLQ---------------------------------QQAIAQQVYVSPEEIQKYIK 193

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           K++  +         Y L       K + ++  + +   +K  + +              
Sbjct: 194 KHQKEFDREMSPVKLYTL-------KNLIVALPDSKKARQKKIDLF-------------- 232

Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKK 335
                 +   ++  G   F ++ ++  ++ + +S G  S++   D    +        K 
Sbjct: 233 -----KKLALAVNNGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKN 287

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFT 361
              +     +    + ++ NI     
Sbjct: 288 HQVSQPFIVNHTLQMIYIDNIDEKAP 313


>gi|218888773|ref|YP_002437637.1| putative peptidyl-prolyl isomerase [Pseudomonas aeruginosa LESB58]
 gi|218768996|emb|CAW24754.1| putative peptidyl-prolyl isomerase [Pseudomonas aeruginosa LESB58]
          Length = 428

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++S+ + +A Y +N E+Y +        +   +Q  AD+ +  L+ G  F +       +
Sbjct: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRGGLAFDEAVRRYSLA 329

Query: 307 -----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     LG    +      L  +   + K    +  +     + I  V + K    
Sbjct: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTAL-IQKADTVSQPMRIDGAFEIVRVRSRK-DRQ 387

Query: 362 VSFQE--VKKDIANQMRITKASEKVKEDYKRL 391
           +   +  V+ ++   +   + + + +   + L
Sbjct: 388 LPLDDRSVRFEVNQAVAREQLAAQFETRLRNL 419


>gi|218128453|ref|ZP_03457257.1| hypothetical protein BACEGG_00021 [Bacteroides eggerthii DSM 20697]
 gi|217989344|gb|EEC55657.1| hypothetical protein BACEGG_00021 [Bacteroides eggerthii DSM 20697]
          Length = 455

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 93/288 (32%), Gaps = 32/288 (11%)

Query: 240 HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEAF---------- 287
            +   +I+I+  E++  ++        + P    V+ +    +   +E            
Sbjct: 146 QKLVGEIKITPAEVRRYFKDLPQDSIPYIPTQVEVQIITQQPKVPLEEIENVKKRLRDFT 205

Query: 288 QSLKKGK-KFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
             + KG+  F  LA    +  +    G    FS   + D + A+  F+L      + ++ 
Sbjct: 206 DRITKGETSFSTLARMYSEDRASAIRGGEIEFSGRGMLDPAYANVAFNLQDPNKVSKIVE 265

Query: 344 GSFGYVIAHVSNIKPSFTVSFQE-VKKDI------ANQMRITKASEKVKEDYKRLEEFLA 396
             +G+ I  +   +     +    +K  I      A  +R+   ++ ++      EE  +
Sbjct: 266 SEYGFHIIQLIEKRGDRIKTRHILLKPHIPEAALTAGMLRLDSIADDIRNGKFSFEEAAS 325

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL--LFRVFGK-DDPLSKD 453
           + +   +      ++                 E+A +  K ++  +   F        K+
Sbjct: 326 VLSQDKDTRNNHGLLPNPNNNTSKFEMQELPPEIAKVVDKMKVGEISEAFTMIPQKTGKE 385

Query: 454 HTVAL-----PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
             V +      +G    V   +    ++  LE+    +   W   K  
Sbjct: 386 ECVIVKLKSRTNGHKATVA-DDYQNLKEIVLEKRRDQMLDKWIREKQK 432


>gi|322707187|gb|EFY98766.1| Peptidyl-prolyl cis-trans isomerase PIN4 [Metarhizium anisopliae
           ARSEF 23]
          Length = 124

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA   L  G KF ++A    +  +    +LG  +K  + D    ++ 
Sbjct: 35  VRHILCEKHAKKEEALAKLNDGVKFDEVARNYSEDKARQGGALGWKTKGSL-DPKFEEAA 93

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           F+L +               FGY I  V   K
Sbjct: 94  FAL-EPSTTNNPKIAEAKTEFGYHIIMVEGRK 124


>gi|255534611|ref|YP_003094982.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340807|gb|ACU06920.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 467

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 94/300 (31%), Gaps = 36/300 (12%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT---VEQLVFP---NQKEADEAF 287
           Y         +K +++ +E+   +  N  ++  PE++    + Q+           DE  
Sbjct: 155 YGQMKFGRITEKADVTPNEVTDFF--NTYQFQLPEVKDEVSLSQITMYPKLTDAHKDEII 212

Query: 288 QSLKK-------GKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKG 336
             L K       G+ F   A    +     + G      ++  +       +  +L ++G
Sbjct: 213 ARLNKIKADIAAGESFESQARIYSEDPGSAATGGLYKNVARGKMVKP-FEAAALNL-QEG 270

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           + +  +   FGY +  +            + +  +             +++   +   + 
Sbjct: 271 ELSEPVESEFGYHLIQLVKKSGKMY----DARHILLKAEPNADEIASARKELDSIRTLIN 326

Query: 397 LGT-SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
            G  +  E + R                      +  +     + +++ G +     D  
Sbjct: 327 EGKLTFKEAAFRFSDDKQTKFNAGILTSQDGSDRLEKLNLPPVVSYQIAGLNKGDITDVF 386

Query: 456 VALPDGSYMW--VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
                   +   +++ + I A          D+  D+  +K    ++ K N++V ++ KE
Sbjct: 387 QDTVQDRKVVTLIKVDDVIAAH-------RLDITTDYDRIKQM-ALNKKKNEMVEKWVKE 438


>gi|162455703|ref|YP_001618070.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sorangium cellulosum
           'So ce 56']
 gi|161166285|emb|CAN97590.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sorangium cellulosum
           'So ce 56']
          Length = 175

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 24/136 (17%)

Query: 242 KEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVFPNQKEADE--------------- 285
                 I   E  A  E+ +      P+      L+  ++    +               
Sbjct: 42  LAVSAPIRAAEEDAAIERERAVIASQPKQIGARHLLVMHEGSKSKPEGLRRTRAEARARA 101

Query: 286 --AFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
             A   ++ G  F +   E             LG F +  +     +D+ F+L K G+ +
Sbjct: 102 QEALLKIRGGASFEEAVAEYSDEPGAAERGGDLGVFERGMMVK-GFSDAAFAL-KIGEVS 159

Query: 340 PVIHGSFGYVIAHVSN 355
            +I   FG+ I   + 
Sbjct: 160 EIIETPFGFHIIQRTE 175


>gi|294507824|ref|YP_003571882.1| PPIC-type PPIASE domain protein [Salinibacter ruber M8]
 gi|294344152|emb|CBH24930.1| PPIC-type PPIASE domain protein [Salinibacter ruber M8]
          Length = 685

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 8/156 (5%)

Query: 284 DEAFQSLKKGK-KFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           D     ++ G   F   A E  +         +LG  +   +P   L  ++ +L   G  
Sbjct: 290 DSLRTEIRDGPLSFAAAAREYSQDRQSASEGGALGEVTPRALP-PPLRKTVAALDSAGAV 348

Query: 339 TPVIHGSFGYVIAHVSNI--KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           + ++   FGY +  + +   +PSF  ++ E+K  +  Q R  + +       +      A
Sbjct: 349 SGIVQTRFGYHLLKLIDRSERPSFDEAYSELKDRLVGQPRAEERTAAFARTVRAEVGAAA 408

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
               +  I+R   + S+  PL+  A         AA
Sbjct: 409 DTARLLTIARAGSVDSLARPLLTHADTLSGAARPAA 444



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 82/305 (26%), Gaps = 46/305 (15%)

Query: 271 TVEQLVF---------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS--------LG 313
            V  ++             +EA     S+ +G  F  LA     + +  +          
Sbjct: 161 DVSHILIRPTSSSDTLAAYREAQAIADSVGRGVPFGDLALRNSDAPAARTEGRRGYRGRL 220

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
            + +         D ++++   G  + +    FGY I  V + +P+          ++A+
Sbjct: 221 GYLQAGDIVEPFEDRMYAVP-PGGTSDIFRTKFGYHILKVHDRRPAAQP------VELAH 273

Query: 374 QMRITK-----ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
            +R  +     +   +      + +      S    +R              A +     
Sbjct: 274 ILRRPQGDSATSRRLLDSLRTEIRD---GPLSFAAAAREYS------QDRQSASEGGALG 324

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK-LEEVLTDVK 487
           EV        L   V   D   +    V           + + I   +R   +E  +++K
Sbjct: 325 EVTPRALPPPLRKTVAALDSAGAVSGIVQT----RFGYHLLKLIDRSERPSFDEAYSELK 380

Query: 488 KDWKTV-KTAEEVSSKANQLVLEYSKEGKN--FRDIGKNLGASLLTTNQINRMDNENKFF 544
                  +  E  ++ A  +  E            I +      L    +   D  +   
Sbjct: 381 DRLVGQPRAEERTAAFARTVRAEVGAAADTARLLTIARAGSVDSLARPLLTHADTLSGAA 440

Query: 545 GYDGI 549
                
Sbjct: 441 RPAAT 445


>gi|213581625|ref|ZP_03363451.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 139

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 284 DEAFQSLKKGKK-FIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFT 339
           +E    +K GK  F   A+E  +     + G    ++   I D +  D++  L K G  +
Sbjct: 19  EEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHK-GQIS 77

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
             +H SFG+ +  + + +     +    K      +   K SE+     + 
Sbjct: 78  APVHSSFGWHLIELLDTRK-VDKTDAAQKDRAYRMLMNRKFSEEAATWMQE 127


>gi|149925857|ref|ZP_01914121.1| hypothetical protein LMED105_06517 [Limnobacter sp. MED105]
 gi|149825974|gb|EDM85182.1| hypothetical protein LMED105_06517 [Limnobacter sp. MED105]
          Length = 284

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 85/177 (48%), Gaps = 6/177 (3%)

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           + E+ K   RA E + +S +      +E +  +S+D+++A Y+ N       +   V   
Sbjct: 110 YVEEAKAALRAAEREVLSTLYTTKRMEELRKAVSDDDVKAYYDANVLDQNF-QQWKVSYY 168

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
           +  +QK+  +  + L+KG+K    A +Q K L +   G    + +P       + S  KK
Sbjct: 169 LSNDQKDVQQTLEKLRKGEKD---ALDQLKPLVEQGDGYAVAQALPYNLGR--VVSKMKK 223

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           G+F+ V+    G ++  + + K     + +E+K+DI   + + K + ++++  ++ +
Sbjct: 224 GEFSEVLRLRNGLLVLKIEDSKQLKKPTVEELKQDIVQALALEKFNAELEQARRQAK 280


>gi|332288953|ref|YP_004419805.1| peptidyl-prolyl cis-trans isomerase SurA [Gallibacterium anatis
           UMN179]
 gi|330431849|gb|AEC16908.1| peptidyl-prolyl cis-trans isomerase SurA [Gallibacterium anatis
           UMN179]
          Length = 313

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/386 (11%), Positives = 106/386 (27%), Gaps = 89/386 (23%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           +T   K  L+V  +     G +           V +V    +  S    +          
Sbjct: 2   KTKWIKFLLLVGCLSLATTGYAV-------EKVVATVNGTPILNSQVKQAL--------- 45

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
                   +RA +       LD+++    + + I+D  +     ++   + +       +
Sbjct: 46  -------GKRADTAANRAAALDDVIDDMLVQKAIKDAKISVSQQQIQQIMHQIAN----E 94

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFE 188
           N  ++  F+  L  +GI E ++       +    V        +  S   +++       
Sbjct: 95  NGLTYGQFLDALDYQGIGEAKFRQQIAHQIIMGQVRNKAISESISVSREQIEKLG----- 149

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
                                     Q + + K        K   Y L      +    +
Sbjct: 150 -------------------------KQMYNEAKQKGTLKTVKSPQY-LVSHILIKTNPLL 183

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           ++ + + +    +                            +     F   A+   K   
Sbjct: 184 NDAQAKKQLSSLRSDI-------------------------IAGKTTFAAAAKTYSKDYL 218

Query: 309 DISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
             + G    ++   + +      + + +KKG  +      +G+ I  V + +     + +
Sbjct: 219 SGANGGSLDWNFPEVYEPEFQSMVKN-SKKGVISQPFKTKYGWHILEVVDKRDG-DKTKE 276

Query: 366 EVKKDIANQMRITKASEKVKEDYKRL 391
              +    Q+   +A E  K+  K L
Sbjct: 277 AYMQKAYQQVVNQQAMEASKDWVKTL 302


>gi|313111450|ref|ZP_07797252.1| putative peptidyl-prolyl isomerase [Pseudomonas aeruginosa 39016]
 gi|310883754|gb|EFQ42348.1| putative peptidyl-prolyl isomerase [Pseudomonas aeruginosa 39016]
          Length = 428

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++S+ + +A Y +N E+Y +        +   +Q  AD+ +  L+ G  F +       +
Sbjct: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLA 329

Query: 307 -----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     LG    +      L  +   + K    +  +     + I  V + +    
Sbjct: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTAL-IQKADTVSQPMRIDGAFEIVRVRS-REDRQ 387

Query: 362 VSFQE--VKKDIANQMRITKASEKVKEDYKRL 391
           +   +  V+ ++   +   + + + +   + L
Sbjct: 388 LPLDDRSVRFEVNQAVAREQLAAQFETRLRNL 419


>gi|330875443|gb|EGH09592.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 91

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++    +EA++  Q + KG+ F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKTAEEAEQLKQRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVG-AMDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHV 353
            IF    +      I   FGY +  V
Sbjct: 63  VIFKKPLR-VVHGPIKSKFGYHLVQV 87


>gi|116053747|ref|YP_788182.1| putative peptidyl-prolyl isomerase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115588968|gb|ABJ14983.1| putative peptidyl-prolyl isomerase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 428

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++S+ + +A Y +N E+Y +        +   +Q  AD+ +  L+ G  F +       +
Sbjct: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLA 329

Query: 307 -----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     LG    +      L  +   + K    +  +     + I  V + +    
Sbjct: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTAL-IQKADTVSQPMRIDGAFEIVRVRS-REDRQ 387

Query: 362 VSFQE--VKKDIANQMRITKASEKVKEDYKRL 391
           +   +  V+ ++   +   + + + +   + L
Sbjct: 388 LPLDDRSVRFEVNQAVAREQLAAQFETRLRNL 419


>gi|170739823|ref|YP_001768478.1| hypothetical protein M446_1543 [Methylobacterium sp. 4-46]
 gi|168194097|gb|ACA16044.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
          Length = 303

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 61/206 (29%), Gaps = 33/206 (16%)

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
            R    +         IA+P    L ++++ + + YR                       
Sbjct: 105 RRLAQKLSFLVEDTARIAEPGEDQLRRFYQDHAERYRTAPRLS----------------- 147

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
                       ++ +FSPE R          +    +  + +       LA       S
Sbjct: 148 -----------FQQIFFSPERRPQAAAEASAARTLLSSASATETLPDGDPLA----LDSS 192

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
              +   +   +   + A + F+L   G ++  +  ++G  +  VS+        + EV+
Sbjct: 193 FADIDLQALSSLFGPAFARAAFALP-VGSWSGPVESAYGTHLVLVSSRAQGALRGYDEVR 251

Query: 369 KDIANQMRITKASEKVKEDYKRLEEF 394
             ++      K  E       RL + 
Sbjct: 252 NLVSEDWHRAKERELKDAYLGRLRDK 277


>gi|71282523|ref|YP_267498.1| peptidyl-prolyl cis-trans isomerase C [Colwellia psychrerythraea
           34H]
 gi|71148263|gb|AAZ28736.1| peptidyl-prolyl cis-trans isomerase C [Colwellia psychrerythraea
           34H]
          Length = 92

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++  +++ A++  + L KG KF  LA++     S      LG F +  +         F
Sbjct: 9   HILVKHKEIAEDIIEQLGKGAKFQTLAKKYSSCPSGKKGGDLGEFKRGQMV-PQFDKIAF 67

Query: 331 --SLAKKGDFTPVIHGSFGYVIAHV 353
             +L +    + ++   FG+ +  V
Sbjct: 68  KGALLE----SHLVKTKFGWHVIKV 88


>gi|261401822|ref|ZP_05987947.1| conserved hypothetical protein [Neisseria lactamica ATCC 23970]
 gi|269208029|gb|EEZ74484.1| conserved hypothetical protein [Neisseria lactamica ATCC 23970]
          Length = 288

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 83/241 (34%), Gaps = 23/241 (9%)

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            +    +       ++  + KR   +          +     +     A   +  +  K 
Sbjct: 55  QLRRALLNQEITHTVVAQEVKRLKLDR---------SAEFKDMLAKLRAEAEKSGDDKKP 105

Query: 223 NYRAPEYKRISYILFDVH---EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +++      + Y L          K   +S  + +A Y+  +  Y   +   + +++   
Sbjct: 106 SFKTVWQ-AVEYGLNGRAYALHIAKTQPVSEQDAKAAYDNIRGFYKGTQEVQLGEILTDK 164

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD------SIFSLA 333
           +  A +A   LK  K F  + ++   +      G     Y+P   L              
Sbjct: 165 EDNAKKAVAGLKAKKGFDAVLKQYSLNDHTKQTGK-PDGYVPLKDLEQGVPPLYQAIKDL 223

Query: 334 KKGDF--TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           KKG+F  TP+ +G F Y + +V++ +     SF E+K+ +   ++  +    V     + 
Sbjct: 224 KKGEFTATPLKNGDF-YGVYYVNDRREVKVPSFDEMKEQLTGDLQAERIDRAVGALLGKA 282

Query: 392 E 392
           +
Sbjct: 283 D 283


>gi|118497158|ref|YP_898208.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. novicida U112]
 gi|194323456|ref|ZP_03057233.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           novicida FTE]
 gi|118423064|gb|ABK89454.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella novicida
           U112]
 gi|194322311|gb|EDX19792.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           novicida FTE]
          Length = 469

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/326 (10%), Positives = 93/326 (28%), Gaps = 74/326 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQ-KIGFVVNSERARSVGLDKKILDNLVSGAT 98
           + TV  V  + +           EL  +   +     N++  +   L ++ L +L+S + 
Sbjct: 52  NKTVAIVNSRPITSFELDQ----ELAKLEAMQPNSAFNTDPLK---LKRQALQDLISQSV 104

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L Q  E   +   + ++   I          N  S +     +   G++   Y       
Sbjct: 105 LLQLAERNNITISNQQLDSAIQDIAA----KNGVSVESLKLNVEAAGMSFDSYKKRIRDQ 160

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L  + +                                   + +      S   + ++ +
Sbjct: 161 LMISQLQ---------------------------------QQAIAQQVYVSPEEIQKYIK 187

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           K++  +         Y L       K + ++  + +   +K  + +              
Sbjct: 188 KHQKEFDREMSPVKLYTL-------KNLIVALPDSKKARQKKIDLF-------------- 226

Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKK 335
                 +   ++  G   F ++ ++  ++ + +S G  S++   D    +        K 
Sbjct: 227 -----KKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKN 281

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFT 361
              +     +    + ++ NI     
Sbjct: 282 HQVSQPFIVNHTLQMIYIDNIDEKAP 307


>gi|254281870|ref|ZP_04956838.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
 gi|219678073|gb|EED34422.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
          Length = 294

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 14/166 (8%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK---EADEAFQSLKKGKKF 296
            E    ++I+  +L A  ++++++Y +P   +   L F       +  +A Q  +     
Sbjct: 112 AEAVPALDITPADLSAYVDEHRDRYRTPAQISFSHLYFARDDRDPDGKQALQEARTALNS 171

Query: 297 IQLAEEQGKSLSD--------ISLGSFSKEYIPDVSLADSIFSLAKKGDF-TPVIHGSFG 347
             L+     +L D             +          A+ +F+L          I    G
Sbjct: 172 ATLSS--TSALGDRFPYHRHYAERDQYYIGSHFGEEFAEEVFALTPDAQKWQGPIASRLG 229

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           Y +  V+ +  + T   + +K  +   +   +   +  E    L +
Sbjct: 230 YHLVRVTALSAAATPKLETIKVRVEEDILRERRLSQRAEVLNTLVD 275


>gi|281423984|ref|ZP_06254897.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella oris
           F0302]
 gi|281401909|gb|EFB32740.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella oris
           F0302]
          Length = 480

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 65/215 (30%), Gaps = 37/215 (17%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             ++ +    ++D I +    +          +  W        +  EY+  S       
Sbjct: 97  AVQKLFLHQAALDSIEVTESDIAQTV---EQQINYWINSVGSREKLEEYQGKSLSQIRSD 153

Query: 241 ----------------EKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPN--- 279
                           +    + ++  +++  ++        F P    VE LV      
Sbjct: 154 LHDDVKNSKMIQQMKRKIMSDVTVTPADVRRYFKNLPEDSIPFVPTEVEVEILVKKPRIP 213

Query: 280 QKEADEAFQSLK-------KGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLAD 327
           Q E +     L+       KG+  F  LA    E+ G +     +    +  + D + A 
Sbjct: 214 QSEINRVKDQLRSFTDRVTKGETSFSTLARLYSEDPGSARQGGEMDYAGRGTL-DPAFAS 272

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
             F+L      + ++   FGY I  + + +     
Sbjct: 273 VAFNLTDPKKISKIVESEFGYHIIQLVDKRGDKVK 307


>gi|207723025|ref|YP_002253444.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum MolK2]
 gi|206588214|emb|CAQ18779.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum MolK2]
          Length = 268

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 69/229 (30%), Gaps = 14/229 (6%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT--QWFEKYKDNY 224
             V G + +   LD+A        +        + + A             + +      
Sbjct: 24  ALVNGTQVTQAQLDRAIAQSGAQANPQIAQALKQQLIARELFRQQAAKNPAYEKLPAVKL 83

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
              E          + +  K   I++++++A Y+         E +    +   +   A 
Sbjct: 84  AMQEAHDAVITQAWLKDNIKPAPITDEQVKARYDAIVASLGDKEYK-ARVIQLGDDVTAA 142

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLADSIFSLA 333
           +    LK+G  F +LA++   + + +  G              K     + LA  I +L 
Sbjct: 143 QVLALLKQGGDFAKLAQQYSTAPNKVRGGDMDWVSFKVPAEEGKTQNLPLPLAREIAALG 202

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                T  +       I  V   +P+   ++  VK  I   +   +   
Sbjct: 203 IGATSTAPVEVGSQRYIVKVEAARPTQVPAYDTVKPAIRQALESAELER 251


>gi|113461696|ref|YP_719765.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Haemophilus somnus
           129PT]
 gi|112823739|gb|ABI25828.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Haemophilus somnus
           129PT]
          Length = 314

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 27/203 (13%)

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA--------EYEKNKEK 263
            +  +       YR     +I             + ++ +E+Q           ++ KEK
Sbjct: 106 DVLDYQGINYQAYRQQIAYQILISEVRNQAIGSSVNVTREEIQDLGLKLFKQAKKQGKEK 165

Query: 264 YFSPEIRTVEQLVFP-----NQKEADEAFQS-----LKKGKKFIQLAEEQGKS----LSD 309
             +     V  ++       N  +A           L     F   A +  K        
Sbjct: 166 KVTAPEYNVRHILLKLNPLLNDAQAKAKLTQIRADILANKITFADAALKYSKDYLSGADG 225

Query: 310 ISLGS-FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
            SLG  F + Y+P+ +    +   +KKG  +      FG+ I  V++I+ +   + +   
Sbjct: 226 GSLGFMFPEAYVPEFA---KVIRASKKGVISTPFKTEFGWHILEVTDIRNADI-TREAYM 281

Query: 369 KDIANQMRITKASEKVKEDYKRL 391
           ++   Q+   +  E   +  K L
Sbjct: 282 QEAYQQIVNQQLQEASGDWIKAL 304


>gi|293556277|ref|ZP_06674862.1| foldase protein PrsA [Enterococcus faecium E1039]
 gi|291601536|gb|EFF31803.1| foldase protein PrsA [Enterococcus faecium E1039]
          Length = 336

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 85/270 (31%), Gaps = 32/270 (11%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +  D+  M  G +  S+   +       ++     I+    +       ++  +   ++K
Sbjct: 26  TNKDIATMKGGTITVSDFYDEAKLESSNQSLVQRMIIYKVFNNKYGDKVTDKQVDAEYDK 85

Query: 220 YKDN-------------YRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              +             Y    YK  I   L      +  ++I++D+L+  ++       
Sbjct: 86  QAKSLGDTFESQLEAAGYTKDTYKEYIRNNLAFEAGLKAHVDITDDDLKTAWKSFHP--- 142

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIP 321
                  + +   ++ EA +  +S   G  F +LA+++         G   K        
Sbjct: 143 ---EVEAQIIKLSSEDEAKDVKKSADDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTI 199

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSF------GYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              + ++ F L K G+ + VI  +        Y +  +   +        + K  + +  
Sbjct: 200 PAEVKEAAFKL-KDGEISDVITTTNPTSYATEYYVVKMVKNQNKGN-DMDKYKDQLKDIA 257

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEIS 405
              K S+         EE       + + +
Sbjct: 258 TEIKLSDNAFTTKVIGEELKDANVKIKDDA 287


>gi|254671971|emb|CBA04403.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis alpha275]
          Length = 252

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 83/235 (35%), Gaps = 21/235 (8%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
                 ++         S     QA R     R     VL NR +    D  +  +   F
Sbjct: 32  DTLVAQIMQQADRHAEQSQKPDGQAIRNDAVRRLQTLEVLKNRALKEGLD-KDKDVQNRF 90

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +  + ++ A EY R           E+   +S   L+  YE+            ++Q+ F
Sbjct: 91  KIAEASFYAEEYVRF---------LERSETVSESALRQFYERQIRMI------KLQQVSF 135

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
             ++EA +A Q L KG  F  L +           G    + +P+   +   F+   +GD
Sbjct: 136 ATEEEARQAQQLLLKGLSFEGLMKRYPNDEQAFD-GFIMAQQLPEPLASQ--FAAMNRGD 192

Query: 338 FT-PVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            T   +     Y +  +S + K   T  F+ V+  +   +R  KA  K+    + 
Sbjct: 193 VTRDPVKLGERYYLFKLSEVGKNPDTQPFELVRNQLEQGLRQEKARLKIDAILEE 247


>gi|60683327|ref|YP_213471.1| putative exported isomerase [Bacteroides fragilis NCTC 9343]
 gi|60494761|emb|CAH09567.1| putative exported isomerase [Bacteroides fragilis NCTC 9343]
          Length = 517

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 57/425 (13%), Positives = 127/425 (29%), Gaps = 70/425 (16%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVE-----------QLVFPNQKEADEAFQSLKKGKK-- 295
                +  Y++ K +  + E++ +              +   Q   D  +  L+      
Sbjct: 107 DEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPHHLREAQILMDSLYHVLETHPDID 166

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  L  +      +  +G             +  FSL K G+++       G  I  V+ 
Sbjct: 167 FKTLVNKYSDDKKEFWMGWLQTS----QEFEEVAFSL-KDGEYSKPFFTPKGIQIIKVTG 221

Query: 356 IKPSFTVSFQEVKKDIANQMRI----TKASEKVKEDYKRLEEFLALGTSMDEI--SRREK 409
            +      F++++ ++ +++       K  E      K + ++      M+E+  S R  
Sbjct: 222 RRE--IPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKSICQYTPDKAGMEELLASGRTS 279

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
                L    F GKD +     A P   +     F     L  ++            +++
Sbjct: 280 RTLFTLDGKSFTGKDFERFA-DAHPMGIKRQLNAFVVKSILDYENN-----------RLE 327

Query: 470 ESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
           +  P     L++   D +       ++ +   S +  L   + +   ++         ++
Sbjct: 328 QKYPDFRLALQQRRDDLLLAAITRRESRQVSLSDSVALKAFFKEHRTDYNWDSPRYRGAV 387

Query: 529 LTTNQINRMDNENKFFG-------YDGISQVFSGPVE----MVKCFPIENGLSYVVFKVT 577
           L       + +  KF          D I   F+ P       ++      G +  V K+ 
Sbjct: 388 LHGTHKKTLKSARKFLKKLPEEEWKDAIRLTFNTPASPATIRIEQGTFAEGDNVFVDKLV 447

Query: 578 -------------------NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
                                K GP    +  I  L +     L       L++   V +
Sbjct: 448 FKKGDFEPLKSYPFTVVLGEKKKGPESYHE-IIPQLIRDYQNHLDALWTERLRASAKVEI 506

Query: 619 HDNLI 623
           +  ++
Sbjct: 507 NQEVL 511


>gi|254243138|ref|ZP_04936460.1| hypothetical protein PA2G_03937 [Pseudomonas aeruginosa 2192]
 gi|126196516|gb|EAZ60579.1| hypothetical protein PA2G_03937 [Pseudomonas aeruginosa 2192]
          Length = 428

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++S+ + +A Y +N E+Y +        +   +Q  AD+ +  L+ G  F +       +
Sbjct: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRGGLAFDEAVRRYSLA 329

Query: 307 -----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     LG    +      L  +   + K    +  +     + I  V + +    
Sbjct: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTAL-IQKADTVSQPMRIDGAFEIVRVRS-REDRQ 387

Query: 362 VSFQE--VKKDIANQMRITKASEKVKEDYKRL 391
           +   +  V+ ++   +   + + + +   + L
Sbjct: 388 LPLDDRSVRFEVNQAVAREQLAAQFETRLRNL 419


>gi|330718762|ref|ZP_08313362.1| peptidylprolyl isomerase [Leuconostoc fallax KCTC 3537]
          Length = 301

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 95/369 (25%), Gaps = 123/369 (33%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K    +L V F+         SV+ S T+ +    K+    F N                
Sbjct: 3   KFIWGLLVVIFVG---GMVFLSVNSSKTLATSTAGKITEKDFYN---------------- 43

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
               + +     K+    +V    L+   +  G       V         F  + +++  
Sbjct: 44  ----QIKKSSAGKQEFAKMVINKVLE---DKYGDNVSKADV------DSAFEAQKSQYGS 90

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
             F   LA   + EK+  D     L                                   
Sbjct: 91  S-FKEVLASNNMTEKQLKDSLRNNL----------------------------------- 114

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
             L    + A  + +   + + ++ YK                        + IS     
Sbjct: 115 --LTKAAIKANYNVTEKQIKKAYDDYK----------------------PAVTIS----- 145

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-- 312
                               L   N++ A  A   +K GK + ++ ++     +  S   
Sbjct: 146 -------------------MLKAKNEENAKNAANDIKDGKSWSEVYKKYSTDSTYKSTTG 186

Query: 313 ---GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
                 S     D S+ ++ F L K GD+      S  Y +  +         S   ++ 
Sbjct: 187 KISAFDSTSTSVDSSIQNAAFKLNKVGDYAVTSDSSGNYYLLKLEKKTDK--PSLNSLRS 244

Query: 370 DIANQMRIT 378
            +  Q+   
Sbjct: 245 KLTEQIITE 253


>gi|315055243|ref|XP_003176996.1| peptidyl-prolyl cis-trans isomerase pin4 [Arthroderma gypseum CBS
           118893]
 gi|311338842|gb|EFQ98044.1| peptidyl-prolyl cis-trans isomerase pin4 [Arthroderma gypseum CBS
           118893]
          Length = 130

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
              ++     + +EA + L+ G KF ++A E  +  +    SLG   +  + D +   + 
Sbjct: 41  ARHILCEKHSKKEEALEKLRAGAKFDEVAREFSEDKARQGGSLGWKVRGSL-DAAFEKAA 99

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           + L +               FGY I  V   K
Sbjct: 100 YEL-EPSTTGNPKYVEVKTGFGYHIIMVEGRK 130


>gi|217977671|ref|YP_002361818.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
           silvestris BL2]
 gi|217503047|gb|ACK50456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
           silvestris BL2]
          Length = 263

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 57/174 (32%), Gaps = 16/174 (9%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------- 280
           E    + I   +  + +         +  Y+ ++ ++ +P++     ++F  +       
Sbjct: 66  EADEEAMIRVLLEREVRTPTADESVCRRYYDNHRARFQTPDLFEPAHILFKVRRDDAAAY 125

Query: 281 ----KEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYIPDV--SLADSIFSLA 333
               + A+     L +    F   A       S    G   +  + D        + ++ 
Sbjct: 126 ARAIERAEAVLAKLAERPDRFGDFARNLSDCPSGKEGGRLGQVALGDTTSEFETCLLAM- 184

Query: 334 KKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           + G   P  +   +G  +  +    P  T+ F+ V+  IA  +  +     V +
Sbjct: 185 EGGQICPTPVRARYGVHVLRLERKAPGQTLPFEAVRDRIAAYLEESSWRRAVAQ 238


>gi|300173120|ref|YP_003772286.1| foldase protein prsA precursor [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887499|emb|CBL91467.1| Foldase protein prsA precursor [Leuconostoc gasicomitatum LMG
           18811]
          Length = 302

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 85/253 (33%), Gaps = 43/253 (16%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMF--------VGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
           I EK++I+   K  +                  G   S   +  A           +  +
Sbjct: 36  ITEKQFINDVKKSSAGQQEFANMTINKVLDNQYGGNVSKADIQNAYDTQKAQYGDSFKSV 95

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
              +                   +D ++      I   L      +   ++++ ++   Y
Sbjct: 96  LASN----------------NATEDQFKT----NIKNNLVMNAAIKANYKVTDKQINQAY 135

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK----SLSDISLG 313
           +            T+  +   +   A +A ++LK G  +  + ++       +  +  L 
Sbjct: 136 KDYHPNI------TISMITAKDDNSAKQAIEALKSGDSWNTVYKKYTTEKTYAKQNGQLP 189

Query: 314 SF-SKEYIPDVSLADSIFSLAKKGDF--TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
           SF S     D ++ ++ F L+K  D+  +P+   + G+ +  ++        S   V+  
Sbjct: 190 SFDSTSTSVDSAVQEAAFKLSKPNDYSDSPITGSNGGFYVIQLNKTT--TKPSLNNVRSK 247

Query: 371 IANQMRITKASEK 383
           +++++  T  +++
Sbjct: 248 LSDKIVSTSLNDQ 260


>gi|189188062|ref|XP_001930370.1| peptidyl-prolyl cis-trans isomerase pin4 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|330922090|ref|XP_003299691.1| hypothetical protein PTT_10742 [Pyrenophora teres f. teres 0-1]
 gi|187971976|gb|EDU39475.1| peptidyl-prolyl cis-trans isomerase pin4 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|311326516|gb|EFQ92203.1| hypothetical protein PTT_10742 [Pyrenophora teres f. teres 0-1]
          Length = 125

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 14/130 (10%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                K K  + S  + +++ + +  K        V  ++     + +EA + L+ G KF
Sbjct: 1   MAPKNKGKGKDDSKSDAKSDSKASNSKLKPATSINVRHILCEKHSKKEEALEKLRNGAKF 60

Query: 297 IQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSIFSL-------AKKGDFTPVIHGSFG 347
            ++A E  +  +    SLG   +  +         + L        K G+       S G
Sbjct: 61  DEVAREMSEDKARQGGSLGWKVRGSLM-QEFEKVAYELEPSTTGSPKIGEV----KTSEG 115

Query: 348 YVIAHVSNIK 357
           Y I  V   K
Sbjct: 116 YHIVMVEGRK 125


>gi|107099020|ref|ZP_01362938.1| hypothetical protein PaerPA_01000028 [Pseudomonas aeruginosa PACS2]
          Length = 428

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++S+ + +A Y +N E+Y +        +   +Q  AD+ +  L+ G  F +       +
Sbjct: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRSGLAFDEAVRRYSLA 329

Query: 307 -----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     LG    +      L  +   + K    +  +     + I  V + +    
Sbjct: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTAL-IQKADTVSQPMRIDCAFEIVRVRS-REDRQ 387

Query: 362 VSFQE--VKKDIANQMRITKASEKVKEDYKRL 391
           +   +  V+ ++   +   + + + +   + L
Sbjct: 388 LPLDDRSVRFEVNQAVAREQLAAQFETRLRNL 419


>gi|144897804|emb|CAM74668.1| peptidyl-prolyl cis/trans isomerase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 212

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 22/125 (17%)

Query: 247 EISNDELQAEYEKNKEKYFSPE-IRTVEQLVF-----------PNQKEA----DEAFQSL 290
           EIS+  ++  +  +  +   PE       ++             ++ EA    +     +
Sbjct: 88  EISDV-VETPFGFHLIQRTVPEAQIRASHILLMYEGSMHSSAERSKAEALAQINAIKADI 146

Query: 291 KKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
             G  F + A +     S      LG F +  +       + F+L   G  + V+   FG
Sbjct: 147 AAGADFAKQAIDHSDCPSGREGGDLGDFGRGQMVG-EFETAAFAL-DVGQISDVVETPFG 204

Query: 348 YVIAH 352
           Y +  
Sbjct: 205 YHLIQ 209



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 20/102 (19%)

Query: 269 IRTVEQLVF-----------PNQKEADE----AFQSLKKGKKFIQLAEEQGKSLSD---I 310
                 ++             ++ EA          + KG  F QLA +     S     
Sbjct: 4   QIRASHILLMYQGSMRSTATRSKDEALAMITDLKAQIAKGADFAQLAAQNSDCPSGREGG 63

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            LG+F    +      D+      +G+ + V+   FG+ +  
Sbjct: 64  DLGTFGPGMMV--PDFDAAAFALAEGEISDVVETPFGFHLIQ 103


>gi|45185568|ref|NP_983284.1| ACL120Wp [Ashbya gossypii ATCC 10895]
 gi|44981286|gb|AAS51108.1| ACL120Wp [Ashbya gossypii ATCC 10895]
          Length = 163

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 267 PEIRTVEQLVFPNQKEADEA---FQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYI 320
           P     E +         E     +  ++G++F +LA E+    S      LG+F +  +
Sbjct: 71  PASHRNEHITLDKAAAVAELEQYAERYRQGERFEELARERSDCSSYKRGGDLGTFGRGEM 130

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
              S     F+L   G  + V+    G  +  
Sbjct: 131 -QPSFEKVAFALP-VGGVSDVVESDSGVHLIK 160


>gi|15595225|ref|NP_248717.1| hypothetical protein PA0027 [Pseudomonas aeruginosa PAO1]
 gi|9945847|gb|AAG03417.1|AE004442_4 hypothetical protein PA0027 [Pseudomonas aeruginosa PAO1]
          Length = 428

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++S+ + +A Y +N E+Y +        +   +Q  AD+ +  L+ G  F +       +
Sbjct: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRGGLAFDEAVRRYSLA 329

Query: 307 -----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     LG    +      L  +   + K    +  +     + I  V + +    
Sbjct: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTAL-IQKADTVSQPMRIDGAFEIVRVRS-REDRQ 387

Query: 362 VSFQE--VKKDIANQMRITKASEKVKEDYKRL 391
           +   +  V+ ++   +   + + + +   + L
Sbjct: 388 LPLDDRSVRFEVNQAVAREQLAAQFETRLRNL 419


>gi|28870210|ref|NP_792829.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213970608|ref|ZP_03398734.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato T1]
 gi|301386316|ref|ZP_07234734.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. tomato Max13]
 gi|302060898|ref|ZP_07252439.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. tomato K40]
 gi|302133972|ref|ZP_07259962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|28853456|gb|AAO56524.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213924605|gb|EEB58174.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato T1]
 gi|330968409|gb|EGH68669.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331015438|gb|EGH95494.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 91

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++    +EA++  Q + KG+ F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKTAEEAEQLKQRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVG-AIDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHV 353
            IF    +      I   FGY +  V
Sbjct: 63  VIFKKPLR-VVHGPIKSKFGYHLVQV 87


>gi|85375039|ref|YP_459101.1| hypothetical protein ELI_11060 [Erythrobacter litoralis HTCC2594]
 gi|84788122|gb|ABC64304.1| hypothetical protein ELI_11060 [Erythrobacter litoralis HTCC2594]
          Length = 271

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 86/262 (32%), Gaps = 23/262 (8%)

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD------ 207
              + + R  +V   +GG         Q +     +R +D        +    +      
Sbjct: 5   ERARTILREPLVHFLLGGALIFAFFAWQGEEADPASRVIDVDEQVQAQIALTYERTMQRP 64

Query: 208 PSNAVLTQWFEK-------YKDNYRA--------PEYKRISYILFDVHEKEKKIEISNDE 252
           P++A L    ++       Y++  R            +    + F      +  E   DE
Sbjct: 65  PTDAELDALIDRWVREEVLYREALRLGLDAGDPVVRRRLAKKMDFLAASSAQATEPDEDE 124

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L   Y  N  +Y      + +Q+ F  Q EA      L++G + +        S+    L
Sbjct: 125 LADWYRANAGRYAEDTRLSFDQVYFAEQPEAAAVLTQLRQGWQGVGDPASLPGSIEGRGL 184

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
            + + ++  D   A+ +  +     +   +    G+    +  ++         V++ + 
Sbjct: 185 PAVAAQFGQD--FANRLAGMEPSAAWEGPVRSGVGWHFVRLRAVEVGEVPPLDAVRQRVI 242

Query: 373 NQMRITKASEKVKEDYKRLEEF 394
              R+  +  + +E Y+ L + 
Sbjct: 243 EDWRLETSKTREEEAYRLLRDA 264


>gi|294012540|ref|YP_003546000.1| peptidyl-prolyl cis-trans isomerase SurA [Sphingobium japonicum
           UT26S]
 gi|292675870|dbj|BAI97388.1| peptidyl-prolyl cis-trans isomerase SurA [Sphingobium japonicum
           UT26S]
          Length = 461

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/464 (12%), Positives = 118/464 (25%), Gaps = 97/464 (20%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V  + +  +         L +I    G  V+ E      L  ++L NL+      Q  
Sbjct: 73  AIVNGRIITGTDVDQR----LALIITANGGKVSDEE--KERLRVQVLRNLIDETLQIQEA 126

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
               ++ D   +                     +    A    +  ++  +  +  S + 
Sbjct: 127 AANDIKVDKAEIDQS------------------YERVAANFRQSPAQFDQYLRQQGSSSA 168

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
            +   + G                    + +  L  R++    + S   +          
Sbjct: 169 SIKRQIEG-------------------ELAWSRLLRRNIQPFVNVSEDEVKS-------- 201

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
                         +  +   +  I    L A          +PE +  +Q++      A
Sbjct: 202 ---------VVDRMNAAKGSDEFRIGEIYLSA----------TPENQ--QQII----ANA 236

Query: 284 DEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                 +K+G  F   A    E   +     LG      +PD  LA +   + + G    
Sbjct: 237 RNIIDQIKQGGSFAAYARQFSEASTAAVGGDLGWVRPVQLPD-ELAQAAAEM-QVGQIAG 294

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
            I    G  I +V + +   T        D  + +   K            E+      +
Sbjct: 295 PIGVPGGVSIIYVMDKRKVLT-------ADPRDALLSLKQLSVSFPAGTTKEQASTRAAA 347

Query: 401 MDEISRREKIVSIDLPLVDFAGKD-VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
                +  K       L    G D V    V       QL   +       +     ++ 
Sbjct: 348 FAAQVKAVKGCGQANELGGKIGADVVDNDNVKLRDLPPQLQDILLNLQVGEATPPFGSIN 407

Query: 460 DGSYMWV---QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
           DG  + V   + + S  A           +    +  +  +   
Sbjct: 408 DGVRVLVVCGRDEASSAAAPNA-----EQIMAQLEEERVNKRAR 446


>gi|169632503|ref|YP_001706239.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter baumannii SDF]
 gi|169794825|ref|YP_001712618.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter baumannii AYE]
 gi|184159400|ref|YP_001847739.1| parvulin-like peptidyl-prolyl isomerase [Acinetobacter baumannii
           ACICU]
 gi|213157847|ref|YP_002320645.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           AB0057]
 gi|215482372|ref|YP_002324554.1| Peptidyl-prolyl cis-trans isomerase C [Acinetobacter baumannii
           AB307-0294]
 gi|239501754|ref|ZP_04661064.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii AB900]
 gi|260557192|ref|ZP_05829408.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter baumannii ATCC
           19606]
 gi|301345444|ref|ZP_07226185.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii AB056]
 gi|301510337|ref|ZP_07235574.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii AB058]
 gi|301595025|ref|ZP_07240033.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii AB059]
 gi|332852279|ref|ZP_08434084.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           6013150]
 gi|332870502|ref|ZP_08439266.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           6013113]
 gi|332876240|ref|ZP_08444015.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           6014059]
 gi|169147752|emb|CAM85615.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter baumannii AYE]
 gi|169151295|emb|CAO99993.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter baumannii]
 gi|183210994|gb|ACC58392.1| Parvulin-like peptidyl-prolyl isomerase [Acinetobacter baumannii
           ACICU]
 gi|193078274|gb|ABO13238.2| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii ATCC 17978]
 gi|213057007|gb|ACJ41909.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           AB0057]
 gi|213985865|gb|ACJ56164.1| Peptidyl-prolyl cis-trans isomerase C [Acinetobacter baumannii
           AB307-0294]
 gi|260409298|gb|EEX02600.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter baumannii ATCC
           19606]
 gi|322509312|gb|ADX04766.1| ppiC [Acinetobacter baumannii 1656-2]
 gi|323519339|gb|ADX93720.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332729409|gb|EGJ60749.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           6013150]
 gi|332732239|gb|EGJ63507.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           6013113]
 gi|332735512|gb|EGJ66564.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           6014059]
          Length = 96

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
           V  ++  ++  A++  + L+ G  F +LA++      +     LG   K  +    +   
Sbjct: 6   VRHILVKDKDLAEQLKKKLQSGADFAKLAKQYSTCNSAKRGGELGEVKKGQLV-PVIDKV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +F+ A++      I   FGY +  V 
Sbjct: 65  VFTAAER-VLQGPIKSQFGYHLLEVK 89


>gi|260548864|ref|ZP_05823086.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter sp. RUH2624]
 gi|293611035|ref|ZP_06693334.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|260408032|gb|EEX01503.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter sp. RUH2624]
 gi|292826687|gb|EFF85053.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 96

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
           V  ++  ++  A++  + L+ G  F +LA++      +     LG   K  +    +   
Sbjct: 6   VRHILVKDKDLAEQLKKKLQSGADFAKLAKQYSTCNSAKRGGELGEVKKGQLV-PVIDKV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +F+ A++      I   FGY +  V 
Sbjct: 65  VFTAAER-VLQGPIKSQFGYHLLEVK 89


>gi|226327125|ref|ZP_03802643.1| hypothetical protein PROPEN_00990 [Proteus penneri ATCC 35198]
 gi|225204343|gb|EEG86697.1| hypothetical protein PROPEN_00990 [Proteus penneri ATCC 35198]
          Length = 312

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 73/218 (33%), Gaps = 18/218 (8%)

Query: 5   IRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTV-VSVGRQKVPFSSFINS 59
           +RK     + K    +F+ ++    +    S   F+    + V   V    V  S     
Sbjct: 1   MRKTHNGKLMKNWKTLFIGLMIT--VGAATSSTTFAAQELNRVSAIVNNGVVLESDVNRM 58

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +       +        E      L ++IL+ LV    + Q  + + ++     V   I
Sbjct: 59  LQTV-----KMNAKNAGQEMPDEQVLRQQILERLVMDNIILQMAQQMQIDIPDAAVESTI 113

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLL 178
                    +NK S D    RLA +GI+  +Y     K +   +V        +      
Sbjct: 114 QGIAA----ENKLSLDQLKKRLAADGISYNDYRQDIRKEMMLAEVRNNEVRRRITILPQE 169

Query: 179 LDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQ 215
           +D   +      S    + L++  +P   +P+ A + +
Sbjct: 170 VDSLAKQIEGQASQRVDLNLSHILIPLSENPAPAEIEK 207



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 32/236 (13%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY----IVLNNRHVPAIADPSNAV 212
           + + R  ++            ++D       +   +D     +    + + A    S   
Sbjct: 76  EQVLRQQILERL---------VMDNIILQMAQQMQIDIPDAAVESTIQGIAAENKLSLDQ 126

Query: 213 LTQWFEKY---KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           L +         ++YR    K +       +E  ++I I   E+ +  ++ + +      
Sbjct: 127 LKKRLAADGISYNDYRQDIRKEMMLAEVRNNEVRRRITILPQEVDSLAKQIEGQASQRVD 186

Query: 270 RTVEQLVFP-----NQKEADEAFQ-------SLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
             +  ++ P        E ++A Q        LK G  F +LA         ++ G+   
Sbjct: 187 LNLSHILIPLSENPAPAEIEKAQQVITRIMNQLKNGTDFGKLAATYSADPQALNGGNMGW 246

Query: 318 EYIPDVS--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF-TVSFQEVKKD 370
             I ++    A  + + A+KG     IH   G  I  V++I+    T+S  EVK  
Sbjct: 247 ASIDELPTLFAKELTN-AQKGQIVGPIHSGVGLHIIKVNDIRGGSNTLSVTEVKSR 301


>gi|57168199|ref|ZP_00367338.1| probable periplasmic protein Cj1289 [Campylobacter coli RM2228]
 gi|305431656|ref|ZP_07400825.1| SurA domain protein [Campylobacter coli JV20]
 gi|57020573|gb|EAL57242.1| probable periplasmic protein Cj1289 [Campylobacter coli RM2228]
 gi|304445251|gb|EFM37895.1| SurA domain protein [Campylobacter coli JV20]
          Length = 271

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/376 (12%), Positives = 106/376 (28%), Gaps = 115/376 (30%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
           + + F+ +       + + ++  V V ++ +       +                     
Sbjct: 4   ILLSFVFF--ISLTHANTINAIAVVVDKEPITTYDIEQTM-------------------- 41

Query: 81  RSVGL-DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           +++ +   + L  L++       I+  G+      +   I +        NK S + F  
Sbjct: 42  KTLNIPKNQALGILINEKMELSQIKQFGIYTSELELDNAIGKM----LAQNKISLEDFKR 97

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L  +G N +++  ++ K   +  +                                   
Sbjct: 98  DLQAKGQNYEQFRSNFKKDFEKRKLYEKIAST---------------------------- 129

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
               A  D S+    ++FE+ K+ +                                 E 
Sbjct: 130 ----AKTDFSDEGAKKFFEQNKNKFTL-----------------------------FTEI 156

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319
           N   Y S   + +E +    +        +L       +L       LS I +GSF    
Sbjct: 157 NVNIYRSNNAQDLENIKATTKTALKAEKATLTPNNSDPRLL----GLLSSIPIGSF---- 208

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
                              +PV++   GY I  V +     T  + ++K +I N     +
Sbjct: 209 -------------------SPVLNSQKGYEIYQVKDKNGGQTPEYYQIKNEILNAYVSEQ 249

Query: 380 ASEKVKEDYKRLEEFL 395
               +++ + +L   +
Sbjct: 250 RQNYIQDYFDKLRSKI 265


>gi|255636250|gb|ACU18465.1| unknown [Glycine max]
          Length = 292

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 26/156 (16%)

Query: 267 PEIRTVEQLVFP--NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIP 321
           P    V+ L+    +QK   +  Q +  G+    LA E     S      LG   K  + 
Sbjct: 84  PREILVQHLLVKEDDQKLLLDIQQRISSGEDLSDLAVEYSLCPSKEEGGMLGWVRKGQMV 143

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                ++ F+       +      FG+ +  V            E ++ I   ++     
Sbjct: 144 -PEFEEAAFTAPLNKVVS--CKTKFGWHLLQV----------LSEREESILQDIQPD--- 187

Query: 382 EKVKEDYKRLEE-FLALGTSMDEISRREKIVSIDLP 416
               E + ++++     G  + ++   E++    LP
Sbjct: 188 ----ELHVKIQDPSFFDGAQLIDVREPEEVAKASLP 219


>gi|66563115|ref|XP_624205.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
           [Apis mellifera]
          Length = 162

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 49/168 (29%), Gaps = 36/168 (21%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           +  L   +EK         Y    Y      ++  K                 K   PE 
Sbjct: 3   DEELPAGWEKRLSRSTGQHYYLNIYTKESQWDRPDKPADP---------SGNNKGDGPEE 53

Query: 270 RTVEQLVFP-----------------NQKEADEA----FQSLKKGK-KFIQLAEEQG--- 304
                L+                   +++EA E      + +  GK  F +LA +     
Sbjct: 54  VQCSHLLVKHSGSRRPSSWREENITRSKEEALELIKSYREQIVSGKVTFAELASKYSDCS 113

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            +     LG FS+  +       + F+L K G+ +  +H   G  I  
Sbjct: 114 SAKRGGDLGPFSRGAMQKP-FEQAAFAL-KVGELSSPVHTDSGIHIIQ 159


>gi|262278898|ref|ZP_06056683.1| ppic-type ppiase domain-containing protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|262259249|gb|EEY77982.1| ppic-type ppiase domain-containing protein [Acinetobacter
           calcoaceticus RUH2202]
          Length = 351

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 24/147 (16%)

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQ--------KEADEAFQSLKKGKKFIQLAE----EQGK 305
           ++N++K   P+ +T   L+ P++        +  D  ++ LK G  F  LA     + G 
Sbjct: 189 KQNEQKALVPQFQTRHILIQPSEVVSLENAKQIIDNIYKRLKAGDDFATLAATYSNDTGS 248

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           +    SLG  +   +        +  +   G+ +      FG+ I  V+  +        
Sbjct: 249 ARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFGWHILQVTEKRE------- 299

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLE 392
              KD+ ++ +   A + + E     E
Sbjct: 300 ---KDMTHEYQERMARQILGERQFNTE 323



 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 56/189 (29%), Gaps = 27/189 (14%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------NQKEAD 284
            ++       +   +I+IS+ +++   +  + +        V  +          Q  A 
Sbjct: 57  DLAISRLRQQQVMSRIKISDQDVENFLKSPQGQAALGNQVRVIHMRIAGENPQEVQSVAQ 116

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIH 343
           E   +L +      L ++   +   +         + D+    +   +  + G  T +I 
Sbjct: 117 EVRSNLAQSNDINAL-KKLSTANVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLIS 175

Query: 344 GSFGYVIAHVSN-------------------IKPSFTVSFQEVKKDIANQMRITKASEKV 384
              G  +  +                     I+PS  VS +  K+ I N  +  KA +  
Sbjct: 176 VRDGVHVLKLIERKQNEQKALVPQFQTRHILIQPSEVVSLENAKQIIDNIYKRLKAGDDF 235

Query: 385 KEDYKRLEE 393
                    
Sbjct: 236 ATLAATYSN 244


>gi|254411803|ref|ZP_05025579.1| PPIC-type PPIASE domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196181525|gb|EDX76513.1| PPIC-type PPIASE domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 205

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 69/188 (36%), Gaps = 28/188 (14%)

Query: 208 PSNAVLTQ----WFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIEIS-----------ND 251
            S   L      + +++K    APE    ++     V +  + I +S            +
Sbjct: 11  ISEEELQAAGDSFRQEHK-LLSAPETLAWLAQYRMTVEDWSRGIHVSLLTQRLKEILFGE 69

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDI 310
            +   Y  N+  Y       + Q++   + EA+   Q ++ +   F  LA +  +     
Sbjct: 70  TVDTHYMSNRNDYR---RVALSQILVYERVEAERIIQLIRVQPASFCALALDYSQGKQSK 126

Query: 311 SLGSF-SKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
             G F    ++ +    +A ++ + ++ G+    I    GY I  +    P     F+EV
Sbjct: 127 ENGGFLGIHFLAELQPEIAQAVTNRSE-GEVIDPIQTQLGYHILKLEKWLPIE---FREV 182

Query: 368 KKDIANQM 375
           ++ I   +
Sbjct: 183 REQILEYL 190


>gi|312868729|ref|ZP_07728921.1| putative foldase protein PrsA [Lactobacillus oris PB013-T2-3]
 gi|311095715|gb|EFQ53967.1| putative foldase protein PrsA [Lactobacillus oris PB013-T2-3]
          Length = 318

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 62/193 (32%), Gaps = 31/193 (16%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKR--ISYILFDVHEKEKKIEISNDE 252
             S+  +   +  YK  Y               +  +  +   L           I+N +
Sbjct: 70  QVSDKQVNAQYNSYKSQYGSQFSSFLQQNGMTEKSLKQQLRSNLLLEAAVRDYSHITNKQ 129

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK----FIQLAEEQGKSLS 308
           + A+++K + K  + E      ++  ++ +A +    L         F +LA+ +    S
Sbjct: 130 INAQWKKYQPKVQTAE------ILVGSKNDAQDIIDQLNNSSDKYKTFKKLAKSKSTDTS 183

Query: 309 DISLGSFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           +   G     +       D +  ++ F L      T  +    GY + ++         S
Sbjct: 184 NKDNGGRVPAFDNTDNSLDSAYKEAAFKLKTGEYTTTPVKTDDGYQVIYMIEHPAKGKKS 243

Query: 364 --FQEVKKDIANQ 374
               +++  I  +
Sbjct: 244 QHIADLRTQIVQE 256



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 86/262 (32%), Gaps = 48/262 (18%)

Query: 8   ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
            S+  +A I    L +P              G+  V +    K+  S + +S K      
Sbjct: 2   KSKKLIAVIAGAALMLPLA----------ACGNKAVATTSGGKITQSEYYSSMKATSN-- 49

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
                              K++L  ++    L+   ++ G +    +V    A+   +  
Sbjct: 50  ------------------GKQVLQQMILDKVLE---KEYGKQVSDKQVN---AQYNSYKS 85

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD-QAKRFY 186
           +        F S L + G+ EK         L    +          +N  ++ Q K++ 
Sbjct: 86  QYGS----QFSSFLQQNGMTEKSLKQQLRSNLL---LEAAVRDYSHITNKQINAQWKKYQ 138

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            + ++ + +V +      I D     L    +KYK   +  + K       D   +    
Sbjct: 139 PKVQTAEILVGSKNDAQDIID----QLNNSSDKYKTFKKLAKSKSTDTSNKDNGGRVPAF 194

Query: 247 EISNDELQAEYEKNKEKYFSPE 268
           + +++ L + Y++   K  + E
Sbjct: 195 DNTDNSLDSAYKEAAFKLKTGE 216


>gi|301058980|ref|ZP_07199949.1| tetratricopeptide repeat protein [delta proteobacterium NaphS2]
 gi|300446976|gb|EFK10772.1| tetratricopeptide repeat protein [delta proteobacterium NaphS2]
          Length = 824

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 10/198 (5%)

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
           LD     Y E+   D      +    +A  +     + +   +   ++   KR      +
Sbjct: 626 LDTLAAAYAESGLFDKAQETAKKAGILAKSTGQE--RLWADIERRLQSYRSKRAFCSPRN 683

Query: 239 VHEKEKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
              + +   +S    E +  +  +     S     +  +    Q  A E  + LK G  F
Sbjct: 684 PKTEVESTHLSKLKTEEKNRHLWHGSGKKSESRVRISIISVKEQPIAQEILRELKAGGNF 743

Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            +L         +     +G  +   + +  L     +L K G ++  +    GY I   
Sbjct: 744 SELVRRYSIGPGAEHGGDIGYIAPGDMVE-DLRAVAMNL-KVGQYSGTVETGNGYFIIMK 801

Query: 354 SNIKPSFTVSFQEVKKDI 371
           ++ + S   +  E  ++I
Sbjct: 802 TDER-SSPQTLPEETQEI 818


>gi|237800449|ref|ZP_04588910.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023308|gb|EGI03365.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 91

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++  N +EA++  Q + KG+ F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKNAEEAEQLKQRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVG-AIDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHV 353
            IF    +      +   FGY +  V
Sbjct: 63  VIFKKPLR-VVHGPVKSKFGYHLVQV 87


>gi|254237731|ref|ZP_04931054.1| hypothetical protein PACG_03819 [Pseudomonas aeruginosa C3719]
 gi|126169662|gb|EAZ55173.1| hypothetical protein PACG_03819 [Pseudomonas aeruginosa C3719]
          Length = 428

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++S+ + +A Y +N E+Y +        +   +Q  AD+ +  L+ G  F +       +
Sbjct: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRGGLAFDEAVRRYSLA 329

Query: 307 -----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     LG    +      L  +   + K    +  +     + I  V + +    
Sbjct: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTAL-IQKADTVSQPMRIDCAFEIVRVRS-REDRQ 387

Query: 362 VSFQE--VKKDIANQMRITKASEKVKEDYKRL 391
           +   +  V+ ++   +   + + + +   + L
Sbjct: 388 LPLDDRSVRFEVNQAVAREQLAAQFETRLRNL 419


>gi|170718609|ref|YP_001783810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus
           2336]
 gi|168826738|gb|ACA32109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus
           2336]
          Length = 321

 Score = 60.4 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 27/203 (13%)

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA--------EYEKNKEK 263
            +  +       YR     +I             + ++ +E+Q           ++ KEK
Sbjct: 113 DVLDYQGINYQAYRQQIAYQILISEVRNQAIGSSVNVTREEIQDLGLKLFKQAKKQGKEK 172

Query: 264 YFSPEIRTVEQLVFP-----NQKEADEAFQS-----LKKGKKFIQLAEEQGKS----LSD 309
             +     V  ++       N  +A           L     F   A +  K        
Sbjct: 173 KVTAPEYNVRHILLKLNPLLNDAQAKAKLTQIRADILANKITFADAALKYSKDYLSGADG 232

Query: 310 ISLGS-FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
            SLG  F + Y+P+ +    +   +KKG  +      FG+ I  V++I+ +   + +   
Sbjct: 233 GSLGFMFPEAYVPEFA---KVIRTSKKGVISTPFKTEFGWHILEVTDIRNADI-TREAYM 288

Query: 369 KDIANQMRITKASEKVKEDYKRL 391
           ++   Q+   +  E   +  K L
Sbjct: 289 QEAYQQIVNQQLQEASGDWIKAL 311


>gi|114571246|ref|YP_757926.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
           MCS10]
 gi|114341708|gb|ABI66988.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
           MCS10]
          Length = 277

 Score = 60.4 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 62/177 (35%), Gaps = 18/177 (10%)

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEAD 284
            PE    S I   +  + K  E      +  Y+ N+EK  +P++     ++   ++++A 
Sbjct: 78  RPEAPDDSLIRVMLDVEVKTPEPDEASCRRYYDNNREKLRAPDLYEPAHILLQADRRDAP 137

Query: 285 EAFQSLKKGKK-----------FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIF 330
              ++L + +            F ++A ++     +     LG   +         +++ 
Sbjct: 138 AFERALAEARTLLETLSEKPDLFARMARDRSDCVSATEGGRLGQVMRGQT--TPAFEAVL 195

Query: 331 SLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +  + G   P  +   +G  I  + +        F + +  +   +R       V +
Sbjct: 196 AQMQAGAIHPEPVETPYGVHIIRLDHAVRGNIPEFAQARPLVEEFLRDASWRRAVSQ 252


>gi|89901568|ref|YP_524039.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
 gi|89346305|gb|ABD70508.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
          Length = 263

 Score = 60.4 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 54/184 (29%), Gaps = 21/184 (11%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK----------- 295
           E S +  +  +  +   Y + E   V  ++F   +  D      +               
Sbjct: 82  EPSEEACRRHHAAHIALYSTGERIEVRHILFAVTQGVDVVALRNRAETTLLDVRCHDGTG 141

Query: 296 ----FIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYV 349
               F + A       S    G        D     A  +F   + G    ++H  FG  
Sbjct: 142 AEDRFAKAASTLSNCPSGAQGGHLGWLVAADCAPEFAKELFGHTEVGVLPRLVHSRFGLH 201

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
           +  V   +P     F+ V+  +A  +R     +      ++  + LA    +  +     
Sbjct: 202 VVEVLAREPGAEQPFEAVRGAVAMSLR----QKTYVTALRQYLQLLAGQADIAGVDLEAS 257

Query: 410 IVSI 413
             ++
Sbjct: 258 ETAL 261


>gi|89256873|ref|YP_514235.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. holarctica LVS]
 gi|167009233|ref|ZP_02274164.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|290953904|ref|ZP_06558525.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312729|ref|ZP_06803471.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144704|emb|CAJ80035.1| Peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. holarctica LVS]
          Length = 469

 Score = 60.4 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/326 (10%), Positives = 93/326 (28%), Gaps = 74/326 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQ-KIGFVVNSERARSVGLDKKILDNLVSGAT 98
           + TV  V  + +           EL  +   +     N++  +   L ++ L +L+S + 
Sbjct: 52  NKTVAIVNSRPITSFELDQ----ELAKLEAMQPNSAFNTDPLK---LKRQALQDLISQSV 104

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L Q  E   +   + ++   I          N  S +     +   G++   Y       
Sbjct: 105 LLQLAERNNIMISNQQLDSAIQDIAA----KNGVSVESLKLNVEAAGMSFDSYKKRIRDQ 160

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L  + +                                   + +      S   + ++ +
Sbjct: 161 LMISQLQ---------------------------------QQAIAQQVYVSPEEIQKYIK 187

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           K++  +         Y L       K + ++  + +   +K  + +              
Sbjct: 188 KHQKEFDREMSPVKLYTL-------KNLIVALPDSKKARQKKIDLF-------------- 226

Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKK 335
                 +   ++  G   F ++ ++  ++ + +S G  S++   D    +        K 
Sbjct: 227 -----KKLALAVNNGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKN 281

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFT 361
              +     +    + ++ NI     
Sbjct: 282 HQVSQPFIVNHTLQMIYIDNIDEKAP 307


>gi|228965301|ref|ZP_04126394.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228794386|gb|EEM41899.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 94

 Score = 60.4 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              ++ + L   G  +  +  ++GY I  V++ K      F EVK  I   +   +  + 
Sbjct: 3   EFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKKE--LKPFDEVKDKIRKDLEQQRLQDT 59

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIV 411
             +  +++   L     +   ++  K  
Sbjct: 60  TGKWKQQVVNDLLNDADIKVNNKEFKDT 87


>gi|220918358|ref|YP_002493662.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956212|gb|ACL66596.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 587

 Score = 60.4 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 63/165 (38%), Gaps = 4/165 (2%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            + +  F        + + +++L+A Y+ +++++ S  +  +EQ+ F + K A  A + L
Sbjct: 408 SMVFGTFVQRVLVPDVSLKDEDLRAYYDGHRDEFTSAPLYRLEQVAFADMKGAQRAAERL 467

Query: 291 KKGKKFIQL-AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP--VIHGSFG 347
            +G  F  L A  +G+         F  + +    L + +             +  G  G
Sbjct: 468 ARGTDFKWLKANAEGQLPPAQRALDFEGQLLSAKGLPEDLAGALGSAQVGDYRLHQGPRG 527

Query: 348 Y-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              +  V +        + E + DI  ++     +  V +   +L
Sbjct: 528 QGYVVLVVSRTEPQVQPYAEARPDIQKKLFGQALNRAVTDWAAKL 572



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 133/434 (30%), Gaps = 64/434 (14%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  K ++    E++  Y+++  ++       V  L+F  +++A     +L  GK F +L
Sbjct: 154 QQLTKDVKPDALEVERVYKESVRRW------KVRSLLFRQEEDAAAVKPALAGGKGFAEL 207

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHGSFGYVIAHVSNIK 357
           A++          G   +   PD +L     +L   +KG+ T  +    G+ + +V +I 
Sbjct: 208 AKQLIAEKKAEGTGE-PEVLPPDQTLPAVAAALKPLQKGEATTPLKLQNGFAVLYVEDIV 266

Query: 358 ----PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK-IVS 412
               P+     ++   D  +   +T   +++   Y +++E L      D        +V 
Sbjct: 267 YPSDPAKRAEAEKASVDRQSGQLLTAFRKELDRKYVKIDEALLRKIDFDAPKPGFAVLVK 326

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
              P+V  AG+        A    E+    V         D          ++ ++    
Sbjct: 327 DKRPIVRIAGEAPITVGDLANAVGEKFFHGVEKPQQEKRVDKLKRPRLDGLIYKRVFT-K 385

Query: 473 PARDRKLEEVLTDVKKD------------------------------------------- 489
            AR RKL++    ++                                             
Sbjct: 386 EARVRKLDQSEEYLRAVEDQENSMVFGTFVQRVLVPDVSLKDEDLRAYYDGHRDEFTSAP 445

Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL---LTTNQINRMDNENKFFGY 546
              ++       K  Q   E    G +F+ +  N    L                K    
Sbjct: 446 LYRLEQVAFADMKGAQRAAERLARGTDFKWLKANAEGQLPPAQRALDFEGQLLSAKGLPE 505

Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKV--TNSKVGP-VQEKDKFISYLTQMMNKDLL 603
           D    + S  V   +      G  YVV  V  T  +V P  + +      L        +
Sbjct: 506 DLAGALGSAQVGDYRLHQGPRGQGYVVLVVSRTEPQVQPYAEARPDIQKKLFGQALNRAV 565

Query: 604 DSVIAYLKSQYSVT 617
               A L++ + + 
Sbjct: 566 TDWAAKLRAAHEIE 579



 Score = 37.3 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 50/525 (9%), Positives = 126/525 (24%), Gaps = 77/525 (14%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           + V  +  Q V  +    +         +K G   + +        K +L  L+    L 
Sbjct: 72  TPVARIDDQVVRLAELQEALAATHD--ERKAGAATSPDF-------KAVLQRLIDSRLLI 122

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN----------EKE 150
               ++GL+             P    +   F        L ++ +           E+ 
Sbjct: 123 MEAREMGLD-----------ELPELKEQLAVFKDVTLRETLQQQ-LTKDVKPDALEVERV 170

Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
           Y +   +   R+ +             L           + +          P +  P  
Sbjct: 171 YKESVRRWKVRSLLFRQEEDAAAVKPALAGGKGFAELAKQLIAEKKAEGTGEPEVLPPDQ 230

Query: 211 ---AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--DELQAEYEKNKEKYF 265
              AV        K     P   +  + +  V +     + +   +  +A  ++   +  
Sbjct: 231 TLPAVAAALKPLQKGEATTPLKLQNGFAVLYVEDIVYPSDPAKRAEAEKASVDRQSGQLL 290

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
           +   + +++      +              F  L +++   +        +   + +   
Sbjct: 291 TAFRKELDRKYVKIDEALLRKIDFDAPKPGFAVLVKDKRPIVRIAGEAPITVGDLANAVG 350

Query: 326 ADSIFSLAKKGD---FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN--------- 373
                 + K         +       +I      K +      + ++ +           
Sbjct: 351 EKFFHGVEKPQQEKRVDKLKRPRLDGLIYKRVFTKEARVRKLDQSEEYLRAVEDQENSMV 410

Query: 374 -------------QMRITKAS--------EKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
                         ++             E       RLE+         + +       
Sbjct: 411 FGTFVQRVLVPDVSLKDEDLRAYYDGHRDEFTSAPLYRLEQVAFADMKGAQRAAERLARG 470

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD--------GSYM 464
            D   +    +        A+ ++ QLL      +D      +  + D        G   
Sbjct: 471 TDFKWLKANAEGQLPPAQRALDFEGQLLSAKGLPEDLAGALGSAQVGDYRLHQGPRGQGY 530

Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
            V +      + +   E   D++K          V+  A +L   
Sbjct: 531 VVLVVSRTEPQVQPYAEARPDIQKKLFGQALNRAVTDWAAKLRAA 575


>gi|109148909|ref|XP_001119408.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like, partial [Macaca mulatta]
          Length = 138

 Score = 60.4 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 46  KVRHILCEKHGKIMEAVEKLKSGMRFNEVASQYSEDKARQGGDLGWMTRGSMVGP-FQEA 104

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
            F+L   G        P +   FG  I  V   K
Sbjct: 105 AFALPVSGMEKPVFTDPPVKTKFGDHIIMVEGRK 138


>gi|326385672|ref|ZP_08207302.1| hypothetical protein Y88_2730 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209830|gb|EGD60617.1| hypothetical protein Y88_2730 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 286

 Score = 60.4 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 10/166 (6%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEADEAFQ 288
           ++       +    +  E S DEL A Y  + + Y      + + + F     +      
Sbjct: 100 RQRLIERMRMDMAPEPAEPSEDELMAFYATHAQSYSLEPSISFDHVYFLHAPADPAAVLA 159

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEY---IPDVSLADSIFSLAKKGDFTPVIHGS 345
            L  G+K      E         L  + +     +  +   D + +L + G +   +   
Sbjct: 160 RLNAGEKV-----EGDDFWMGRDLPRYGRSMISAMFGLPFLDKLETLPQ-GRWVGPVASI 213

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            G     V++ +P+    + EV+  + +  +   A + ++    RL
Sbjct: 214 KGTHFVRVNDRRPAIPRPYPEVRDLVLHDWKTAHADQALQSQLTRL 259



 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 27/164 (16%)

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGT---SMDEISRREKIVSIDLPLVDFA-- 421
           V++ +  +MR+  A E  +     L  F A      S++     + +  +  P    A  
Sbjct: 99  VRQRLIERMRMDMAPEPAEPSEDELMAFYATHAQSYSLEPSISFDHVYFLHAPADPAAVL 158

Query: 422 GKDVKGKEVAAIPY---------KEQLLFRVFGKDDPLSKDHTVALPDGSYM-------- 464
            +   G++V    +            ++  +FG       D    LP G ++        
Sbjct: 159 ARLNAGEKVEGDDFWMGRDLPRYGRSMISAMFGLPFL---DKLETLPQGRWVGPVASIKG 215

Query: 465 --WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
             +V++ +  PA  R   EV   V  DWKT    + + S+  +L
Sbjct: 216 THFVRVNDRRPAIPRPYPEVRDLVLHDWKTAHADQALQSQLTRL 259


>gi|283779465|ref|YP_003370220.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
           DSM 6068]
 gi|283437918|gb|ADB16360.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
           DSM 6068]
          Length = 325

 Score = 60.4 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 107/360 (29%), Gaps = 79/360 (21%)

Query: 23  VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN-SWKQELGMISQKIGFVVNSERAR 81
           +P L+     A   +S   T+ +V    +  +       K      S +    V      
Sbjct: 16  LPLLLLVAMGAAAELSADETLATVNGHAITRADVDAFVAKLAPPKSSTQPPQPVEVPVVD 75

Query: 82  SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
           +  L  + L  LV    +  F+E   L A    +   +A                F   L
Sbjct: 76  NPQLRAETLAMLVDRELVLSFLERSKLAASEEDIDLIVAS---------------FTREL 120

Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
             +G+   +++      L+R                         ++             
Sbjct: 121 TTQGLTLDDHLKQQQLSLAR---------------FRRQLLWNESWKKYVAR-------- 157

Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
                  ++A L ++F K   ++      R++++   V                      
Sbjct: 158 -----QTTDANLEKFFTKRVRDFDG-TRIRVAHLRLPVDANA------------------ 193

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSK 317
               +PE    EQ++      A E  +S+  G+  F    ++  ++ S      LG   +
Sbjct: 194 ----TPE--AAEQVM----ARAREIKRSIDAGELTFAAACQQFSEAPSAKSGGELGWIGR 243

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
                   A + FSL + G  +  +    G  + H   I+P     + EV+ ++ + +  
Sbjct: 244 HDSMPEPFAAAAFSL-EVGQTSGPVLSPVGVQLVHCLAIEPGKRK-WHEVRGELQSAVVK 301


>gi|262281146|ref|ZP_06058928.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257377|gb|EEY76113.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 96

 Score = 60.4 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
           V  ++  ++  A++  + L+ G  F +LA++      +     LG   K  +    +   
Sbjct: 6   VRHILVKDKDLAEQLKKKLQSGADFAKLAKQYSTCNSAKRGGELGEVKKGQLV-PVIDKV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +F+ A++      I   FGY +  V 
Sbjct: 65  VFTAAER-VLQGPIKSQFGYHLLEVK 89


>gi|156306337|ref|XP_001617585.1| hypothetical protein NEMVEDRAFT_v1g225960 [Nematostella vectensis]
 gi|156194689|gb|EDO25485.1| predicted protein [Nematostella vectensis]
          Length = 367

 Score = 60.4 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 81/237 (34%), Gaps = 24/237 (10%)

Query: 278 PNQKEADEAFQSLKKG-KKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSL 332
             +  A+      K   + F  LA          + G      +   +   +  D +F+ 
Sbjct: 146 EAKALANSLLAQAKSNPEGFSALAMANSDDPGSKNNGGEYDNITPGQMV-PTFNDFVFN- 203

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK-KDIANQMRITKAS-EKVKEDYKR 390
              G    V+   +G+ +  VS         +  ++   IA ++  + A+ +++      
Sbjct: 204 NPVGSI-GVVETDYGFHVIKVSGK-------YDAIRLATIAKKVEPSNATIDELYRKAST 255

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
            E  +  G   DE ++  K       +V  +      + + ++  + +++   F  D  L
Sbjct: 256 FEANV-KGKDFDETAKAAKFT-----VVPASNIKSSDEYIQSLGAQREIVRWTFNDDTEL 309

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
                   P G ++  ++K         ++     +    +  K AEE+  K  +L+
Sbjct: 310 GDVKRFETPTG-FVVAKLKNKNDTGLLSMDVARESIGVILRNEKKAEEIKRKWRELL 365


>gi|150003018|ref|YP_001297762.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
           8482]
 gi|319642196|ref|ZP_07996856.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
 gi|149931442|gb|ABR38140.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
           8482]
 gi|317386182|gb|EFV67101.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
          Length = 456

 Score = 60.4 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 81/251 (32%), Gaps = 38/251 (15%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP----------SNAVLTQWFEKYKDNYR---AP 227
             ++ +    ++D I ++ + + +  +           S   + +++ K     R     
Sbjct: 73  AIQKLFLHQAAIDSIEVSEQEIISDVERRTNWLIDQIGSKEKVEEYYNKTSTQIREMLRE 132

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADE 285
             +    +     +    I+I+  E++  ++        F P    V+ +    +   +E
Sbjct: 133 NIRDGKTVQKMQQQIVGDIKITPAEVRRYFKDLPQDSIPFIPTQVEVQIITMEPKIPQEE 192

Query: 286 AF----------QSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
                       + +  G+  F  LA    E++G       LG   +  +     A+  F
Sbjct: 193 IERVKKTLRDYTERVTSGEIAFSTLARLYSEDEGSRRRGGELGFMGRAELV-PEYANVAF 251

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-------VSFQEVKKDIANQMRITKASEK 383
           +L      + ++   FG+ I  +   +               + K   A  +R+   +  
Sbjct: 252 NLQDPNKVSKIVESEFGFHIIQLIEKRGDRINTRHILLKPKVDEKDLEAALLRLDSIAND 311

Query: 384 VKEDYKRLEEF 394
           ++ +    ++ 
Sbjct: 312 IRNEKFTFDDA 322


>gi|146282555|ref|YP_001172708.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas stutzeri A1501]
 gi|145570760|gb|ABP79866.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas stutzeri A1501]
          Length = 92

 Score = 60.4 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++   + EA +  + L  G+ F  LA +     S      LG      +   S+   
Sbjct: 6   ARHILVKTEAEAAQLKKRLANGEAFDVLARKYSTCPSGKKGGDLGEVRPGQMV-RSIDQV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHV 353
           IF    + +    +   FGY +  V
Sbjct: 65  IFKKPLR-EVHGPVKSQFGYHLVQV 88


>gi|77459306|ref|YP_348813.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens Pf0-1]
 gi|77383309|gb|ABA74822.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Pseudomonas
           fluorescens Pf0-1]
          Length = 91

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++    +EA++  Q +  G+ F  LA++     S      LG      +      D
Sbjct: 4   QARHILVKTAEEAEKLKQRIANGEAFDVLAKKFSTCPSGKRGGDLGEVRPGQMVGAI--D 61

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHV 353
           ++            I   FGY +  V
Sbjct: 62  AVIFKKPLRTVHGPIKSKFGYHLVQV 87


>gi|21233477|ref|NP_639394.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770441|ref|YP_245203.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21115325|gb|AAM43276.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575773|gb|AAY51183.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 322

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 88/280 (31%), Gaps = 50/280 (17%)

Query: 144 EGINEKEYIDHYTKMLSRTDVVG-----MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
           +     EY       L R           FV       LLLDQA++ + ++  V  + L 
Sbjct: 72  QAFTAPEYRALALADLPRGANPAGAADPAFVRAFADRRLLLDQARQVHLQDDPVVAVQLR 131

Query: 199 NRHVPAIAD-----------PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
                 +AD              A +   F  +  +Y       +   L    +  +   
Sbjct: 132 QATDAILADAMQRRARTTAHIDAAQVQAQFNAHPHDYDEVRLSHVFVALQPQGDARRGAP 191

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           +S+ +                              A +  + L  G  F ++A+ +    
Sbjct: 192 LSDAQAL--------------------------ARAQQLKRQLDSGTPFEEVAKRESDDG 225

Query: 308 SDI-SLGSFSKEYIPDVS--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
           S     G  S  ++ +V+   A  + +L   GD +  + G  GY +  V    P+   + 
Sbjct: 226 STAAEGGELSSIFLRNVADVFAAPVQALG-VGDVSAPVRGPEGYHLIRVDARIPA---TL 281

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
           +  +  I  Q+R  +A+    E  ++         +++  
Sbjct: 282 ETARGQIEVQLR-EQAATAALERLRQANPLQFDHAALEAA 320


>gi|251793857|ref|YP_003008589.1| SurA [Aggregatibacter aphrophilus NJ8700]
 gi|247535256|gb|ACS98502.1| SurA [Aggregatibacter aphrophilus NJ8700]
          Length = 308

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/355 (10%), Positives = 103/355 (29%), Gaps = 83/355 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V +V    V  S   ++                     +     +  L+ ++    +
Sbjct: 24  EKVVATVNGIPVLESQVQSALN-------------------KKTNNRQAALNKVIDDILV 64

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           DQ +++ G++ ++ +V   I          N  +    +  L  +GI+ + Y     + +
Sbjct: 65  DQAVQESGVKVNNAQVDKIIEGIAA----QNGLTFGQLLDALDYQGISYRAYRQQIAQQV 120

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             ++V    +      ++  +Q +    +           +   ++A  S+         
Sbjct: 121 MMSEVRNHAISQSV--DISREQVEALAKKMLD------EAKSKGSVAKVSDT-------- 164

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                       + +IL  ++      +                                
Sbjct: 165 ---------QYEVRHILLKLNPLLNDAQ-------------------------------A 184

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA--DSIFSLAKKG 336
           + + ++    +  GK  F   A +  K     + G       P++ +   +      K+G
Sbjct: 185 KAQLEQIRADIIAGKMTFADAALKYSKDYLSGANGGSLGYAFPEMYVGPFNQAIRTTKQG 244

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +      FG+ I  V+N +     +    ++    Q+   +  +  ++  + L
Sbjct: 245 VISAPFKTEFGWHILEVTNTRQG-DRTEDAYRQKAYEQIVNQQLQDSARDWVQAL 298



 Score = 37.3 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 3/123 (2%)

Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
           +  ++  Q+  +       F D         L+      +            +Q      
Sbjct: 183 QAKAQLEQIRADIIAGKMTFADAALKYSKDYLSGANGGSLGYAFPEMYVGPFNQAIRTTK 242

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS---VIAYLKSQY 614
           + V   P +    + + +VTN++ G   E         Q++N+ L DS    +  L+ + 
Sbjct: 243 QGVISAPFKTEFGWHILEVTNTRQGDRTEDAYRQKAYEQIVNQQLQDSARDWVQALRKRA 302

Query: 615 SVT 617
            + 
Sbjct: 303 DIK 305


>gi|223999243|ref|XP_002289294.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974502|gb|EED92831.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 118

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG-----KKFIQLAEEQGKSLSD----ISLGSFSKEYIP 321
           T   ++  +  +A++    +KK       KF  LA+   K  S       LG F K  + 
Sbjct: 21  TASHILL-DGDDAEKRLTDMKKEIKQDYNKFKNLAKMHSKCPSGKSAGGKLGKF-KPGMM 78

Query: 322 DVSLADSIFSL-AKKGDFTPVIHGSFGYVIAHVSNIK 357
                 +IF+  +K G+    +  +FG+ +  +   +
Sbjct: 79  VPPFDKAIFAKESKVGEVIGPVQTNFGWHLIWIEERE 115


>gi|21244891|ref|NP_644473.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21110602|gb|AAM39009.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 320

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 60/167 (35%), Gaps = 27/167 (16%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-----------------KEADEA 286
           +  +I   +++A+++ +   Y   +   +  +    +                   A   
Sbjct: 146 ESAQIDAAQIKAQFDAHPHDY---DEVHLSHVFVALKPQGEARRGTPLTDAQALARAQRL 202

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK---GDFTPVIH 343
            Q L+ G  F +LA  Q    S  + G      +   ++AD+  +  +    G  +  + 
Sbjct: 203 KQQLESGTPFAELAMRQSDDASTAAEGG-ELSPMFLRNVADAFVAPVQDLAVGQVSVPVR 261

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G  GY +  V   +P+   +    +  I  Q+R   A+  +++  + 
Sbjct: 262 GPEGYHLIRVDARRPA---TLDSARGQIEVQLRDQAAANALEQLRQA 305


>gi|332025211|gb|EGI65389.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Acromyrmex
           echinatior]
          Length = 162

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 49/168 (29%), Gaps = 36/168 (21%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           +  L   +EK         Y    Y      ++  K                 K   PE 
Sbjct: 3   DEELPAGWEKRLSRSTGQHYYLNIYTKESQWDRPDKPADP---------SGNGKTDGPEE 53

Query: 270 RTVEQLVFP-----------------NQKEADEA----FQSLKKGK-KFIQLAEEQG--- 304
                L+                   +++EA +      + +  GK  F +LA +     
Sbjct: 54  VQCSHLLVKHSGSRRPSSWREENITRSKEEALDLVKSYREQIASGKATFAELASKYSDCS 113

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            +     LG FS+  +       + F+L K G+ +  +H   G  I  
Sbjct: 114 SAKRGGDLGPFSRGAMQKP-FEQAAFAL-KVGELSSPVHTDSGIHIIQ 159


>gi|254805618|ref|YP_003083839.1| putative peptidyl-prolyl isomerasen [Neisseria meningitidis
           alpha14]
 gi|254669160|emb|CBA07858.1| putative peptidyl-prolyl isomerasen [Neisseria meningitidis
           alpha14]
          Length = 254

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 82/236 (34%), Gaps = 21/236 (8%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS-NAVLTQW 216
                 ++         S     QA R     R     VL NR +    D   +  +   
Sbjct: 32  DTLVAQIMQQADRHAEQSQKPDGQAIRNDAVRRLQTLEVLKNRALKEGLDKDKDKDVQNR 91

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           F+  + ++ A EY R           E+   +S   L+  YE+            ++Q+ 
Sbjct: 92  FKIAEASFYAEEYVRF---------LERSETVSESALRQFYERQIRMI------KLQQVS 136

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           F  ++EA +A Q L KG  F  L +           G    + +P+   +   F+   +G
Sbjct: 137 FATEEEARQAQQLLLKGLSFEGLMKRYPNDEQAFD-GFIMAQQLPEPLASQ--FAAMNRG 193

Query: 337 DFT-PVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           D T   +     Y +  +S + K      F+ V+  +   +R  KA  K+    + 
Sbjct: 194 DVTRDPVKLGERYYLFKLSEVGKNPDAQPFELVRNQLEQGLRQEKARLKIDAILEE 249


>gi|296111979|ref|YP_003622361.1| peptidylprolyl isomerase [Leuconostoc kimchii IMSNU 11154]
 gi|295833511|gb|ADG41392.1| peptidylprolyl isomerase [Leuconostoc kimchii IMSNU 11154]
          Length = 302

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 91/254 (35%), Gaps = 34/254 (13%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++    G +  +  + D  K    +    + ++          + S + +   F+  K  
Sbjct: 28  LMTSDSGKITENEFMADIKKSSAGQQEFANMVINKVLAKQYGGNVSKSDVQDAFDTQKAQ 87

Query: 224 Y------------RAPEYKRISYI--LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           Y               +  +I+    L      +   +I++ +L   Y+   +       
Sbjct: 88  YGDSFKQALASNNTTEDQLKINIKNNLIMTAAVKANYKITDKQLNDAYKNYHQN------ 141

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKK----FIQLAEEQGKSLSDISLGSF-SKEYIPDVS 324
            T+  +   N+  A +A   LK G      + +   ++  +  D  L +F S     D +
Sbjct: 142 TTISLITAKNEDAAKKAIDDLKSGDNWKTVYAKYTADKTYAKQDGQLPAFDSTSTAVDTA 201

Query: 325 LADSIFSLAKKGDF--TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-----MRI 377
           + ++ F L K GD+  TPV   + GY +  ++        S   V+  +++Q     +  
Sbjct: 202 IQEAAFKLNKSGDYTNTPVTGSNGGYYVVTLNKKT--NKPSLNSVRNKLSDQIVSSFLND 259

Query: 378 TKASEKVKEDYKRL 391
            K + K++    ++
Sbjct: 260 QKNTSKIQAIVGKI 273



 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 69/248 (27%), Gaps = 38/248 (15%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K    +L V F+          ++ S T+++    K+  + F                  
Sbjct: 3   KFIWGLLVVIFIG---GLVFLGLNSSKTLMTSDSGKITENEF------------------ 41

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
                 +     ++   N+V    L    +  G       V         F  +  ++  
Sbjct: 42  --MADIKKSSAGQQEFANMVINKVL---AKQYGGNVSKSDVQD------AFDTQKAQY-G 89

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           D F   LA     E +   +    L  T          + ++  L+ A + Y +N ++  
Sbjct: 90  DSFKQALASNNTTEDQLKINIKNNLIMT---AAVKANYKITDKQLNDAYKNYHQNTTISL 146

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
           I   N      A   +      ++     Y A +            +      +     +
Sbjct: 147 ITAKNEDAAKKA-IDDLKSGDNWKTVYAKYTADKTYAKQDGQLPAFD-STSTAVDTAIQE 204

Query: 255 AEYEKNKE 262
           A ++ NK 
Sbjct: 205 AAFKLNKS 212


>gi|94677050|ref|YP_588994.1| peptidylprolyl cis-trans isomerase SurA [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|122070619|sp|Q1LSS0|SURA_BAUCH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|94220200|gb|ABF14359.1| peptidylprolyl cis-trans isomerase SurA [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 433

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 46/413 (11%), Positives = 117/413 (28%), Gaps = 75/413 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S       + L    Q    +   E+     L+K I+D L+    +
Sbjct: 30  DQVVAIVNNDIILESEL-----KILRDSIQNYAKLNYQEQLEDNQLNKHIIDRLIIKKII 84

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +   +     ++   I             S ++ +++L     + +   D Y   L
Sbjct: 85  QQQAKLSHITIAETKLNKIIHDLTS--------SQNLSIAKLRHLMYSNRNIYDIYRAQL 136

Query: 160 SRTDVVGMFVGGMRPSN-LLLDQAKRFYFENRSVDY--------IVLNNRHVPAIADPSN 210
            +  ++   +         +L Q   F  +  ++          +++     P+    + 
Sbjct: 137 RQDLLIAEVLNSALHRRITILPQEVEFLAKKIAIRKNTTFNLSHMLIPLPEKPSRKQKNE 196

Query: 211 AVLTQWF----EKYKDNYR-------APEYKRISYILFDVH------------------- 240
           A     F     + ++++R              S+ +  +                    
Sbjct: 197 AEALALFLMAQSEKQNDFRELAIKYSTDTQMLNSFSMIGIQHTKLPLILAKHLYGAQKGS 256

Query: 241 ---EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE---------AFQ 288
                   I I   ++      +       E+     ++     + ++           +
Sbjct: 257 VIGPIYSDIGIHILKVHDMIRTHMSNIPITEV-YARHILLRTSVKRNDNQARVQLLNIAR 315

Query: 289 SLKKGK-KFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            +  G   F  +A++  + +        LG  +       +    + SL  KG  +  + 
Sbjct: 316 KINIGDISFSIVAKQISEDIISSQQGGDLGWNALNAFT-PTFRKLLLSL-NKGQLSIPVR 373

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
            S G+ +  + NI+     + +E    I   +   K +E      +   +   
Sbjct: 374 SSQGWHLIQLQNIRQVENTTNKEAAYRI---LWHRKLAEIAHIWIQEQRDLAY 423


>gi|330503610|ref|YP_004380479.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
 gi|328917896|gb|AEB58727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
          Length = 92

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++   + EA    + +  G+ F  LA +     S      LG      +   ++   
Sbjct: 6   ARHILVKTEAEAAALKKRIAAGEAFDVLARKHSTCPSGKKGGDLGEVRPGQMV-RAVDQV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHV 353
           IF    + +    +   FGY +  V
Sbjct: 65  IFKKPLR-EVHGPVKTQFGYHLIQV 88


>gi|294775653|ref|ZP_06741161.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Bacteroides vulgatus PC510]
 gi|294450497|gb|EFG18989.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Bacteroides vulgatus PC510]
          Length = 452

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 81/251 (32%), Gaps = 38/251 (15%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP----------SNAVLTQWFEKYKDNYR---AP 227
             ++ +    ++D I ++ + + +  +           S   + +++ K     R     
Sbjct: 69  AIQKLFLHQAAIDSIEVSEQEIISDVERRTNWLIDQIGSKEKVEEYYNKTSTQIREMLRE 128

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADE 285
             +    +     +    I+I+  E++  ++        F P    V+ +    +   +E
Sbjct: 129 NIRDGKTVQKMQQQIVGDIKITPAEVRRYFKDLPQDSIPFIPTQVEVQIITMEPKIPQEE 188

Query: 286 AF----------QSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
                       + +  G+  F  LA    E++G       LG   +  +     A+  F
Sbjct: 189 IERVKKTLRDYTERVTSGEIAFSTLARLYSEDEGSRRRGGELGFMGRAELV-PEYANVAF 247

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-------VSFQEVKKDIANQMRITKASEK 383
           +L      + ++   FG+ I  +   +               + K   A  +R+   +  
Sbjct: 248 NLQDPNKVSKIVESEFGFHIIQLIEKRGDRINTRHILLKPKVDEKDLEAALLRLDSIAND 307

Query: 384 VKEDYKRLEEF 394
           ++ +    ++ 
Sbjct: 308 IRNEKFTFDDA 318


>gi|311748700|ref|ZP_07722485.1| peptidyl-prolyl cis-trans isomerase (survival protein)
           [Algoriphagus sp. PR1]
 gi|311302821|gb|EAZ81480.2| peptidyl-prolyl cis-trans isomerase (survival protein)
           [Algoriphagus sp. PR1]
          Length = 458

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 91/322 (28%), Gaps = 76/322 (23%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V    +  S    ++   L  ++Q+       +   +     ++ ++L+    +   
Sbjct: 38  VAKVDNNILLESDIQRAY---LEALAQR-------QEGVTPPTRCEVFESLMVNKLMVAK 87

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            E   +      V        +            F   L + G NE+   + Y K     
Sbjct: 88  AEIDSVVVTDAEV--------MLQT------DQRFNMVLQQFGGNEETLAEVYGK----- 128

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
                       ++ +  + +    E   V  +      +      S A +  ++     
Sbjct: 129 -----------TADQIKTEIEDVIKEQLIVQRMR---GKITEGLTVSPAEVRAFYNAIPK 174

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
           +        +      V +  KK E+S    +  +EK         +R  +Q        
Sbjct: 175 D-----SLPLFTSEATVGQIVKKPEVSPKIKEEIFEK---------LRQFKQ-------- 212

Query: 283 ADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
                  L     F +LA    E+ G       LG F    +       +  +L K+G+ 
Sbjct: 213 -----DILDGKSTFSELATAYSEDPGSRTQGGDLGFFRSGELA-PEYEATALAL-KQGEI 265

Query: 339 TPVIHGSFGYVIAHVSNIKPSF 360
           +  +   FG  +  +   +   
Sbjct: 266 SEPVESDFGIHLIQLLEKRNGS 287


>gi|22536972|ref|NP_687823.1| foldase protein PrsA [Streptococcus agalactiae 2603V/R]
 gi|46396914|sp|Q8E0C6|PRSA_STRA5 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|22533826|gb|AAM99695.1|AE014228_16 protease maturation protein, putative [Streptococcus agalactiae
           2603V/R]
          Length = 309

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 84/244 (34%), Gaps = 22/244 (9%)

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           T+VV M    +  S+           +   +  I+            S+  +++ + K  
Sbjct: 31  TNVVTMKGDTITVSDFYDQVKTSKAAQQSMLTLILSRVFDTQYGDKVSDKKVSEAYNKTA 90

Query: 222 DNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
             Y              PE  +       + E   K     +  +A Y++  + Y +PE 
Sbjct: 91  KGYGNSFSSALSQAGLTPEGYKQQIRTTMLVEYAVKEAAKKELTEANYKEAYKNY-TPET 149

Query: 270 RTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLS-DISLGSFSKEYIPDVSLAD 327
            +V+ +    + +A    + +K  G  F ++A+E+  +    +     S        +  
Sbjct: 150 -SVQVIKLDAEDKAKSVLKDVKADGADFAKIAKEKTTATDKKVEYKFDSAGTTLPKEVMS 208

Query: 328 SIFSLAKKG---DFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           + F L K G     + V   ++   Y I  V++     +  ++  K  +   +   K S+
Sbjct: 209 AAFKLDKNGVSDVVSTVDSTTYKTSYYIIKVTDKTEKKS-DWKSYKNRLKEVILKDKTSD 267

Query: 383 KVKE 386
           +  +
Sbjct: 268 RAFQ 271


>gi|254372525|ref|ZP_04988014.1| hypothetical protein FTCG_00087 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570252|gb|EDN35906.1| hypothetical protein FTCG_00087 [Francisella novicida GA99-3549]
          Length = 469

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/486 (11%), Positives = 141/486 (29%), Gaps = 94/486 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQ-KIGFVVNSERARSVGLDKKILDNLVSGAT 98
           + TV  V  + +           EL  +   +     N++  +   L ++ L +L+S + 
Sbjct: 52  NKTVAIVNSRPITSFELDQ----ELAKLEAMQPNSAFNTDPLK---LKRQALQDLISQSV 104

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L Q  E   +   + ++   I          N  S +     +   G++   Y       
Sbjct: 105 LLQLAERNNIMISNQQLDSAIQDIAA----KNGVSVESLKLNVEAAGMSFDSYKKRIRDQ 160

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L  + +                                   + +      S   + ++ +
Sbjct: 161 LMISQLQ---------------------------------QQAIAQQVYVSPEEIQKYIK 187

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           K++  +         Y L       K + ++  + +   +K  + +              
Sbjct: 188 KHQKEFDREMSPVKLYTL-------KNLIVALPDSKKARQKKIDLF-------------- 226

Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKK 335
                 +   ++  G   F ++ ++  ++ + +S G  S++   D    +        K 
Sbjct: 227 -----KKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKN 281

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK----DIANQMRITKASEKVKEDYKRL 391
              +     +    + ++ NI     +  ++V K     I  ++  +   E  K   +R 
Sbjct: 282 HQVSQPFIVNHTLQMIYIDNIDEKAPILSKKVTKYYVYAIEIKLDGSMNEEGAKSSLERA 341

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
           +  +  G    +++ +              G      E+ + P      F    +     
Sbjct: 342 KLAIESGQEFTKVALKYNQ-----DYDHPNGNFRWVSELDSPPSLPPAAFAQLKQLKENE 396

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV-SSKANQLVLEY 510
                     ++M ++  ++             D  +  K  K  E + S KA ++   +
Sbjct: 397 LSEPFQADGRTWMIIKYTKTKE----------YDAAEQLKEQKALEAIFSEKAQEIYKTW 446

Query: 511 SKEGKN 516
               K+
Sbjct: 447 LTSMKD 452


>gi|328676627|gb|AEB27497.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [Francisella cf. novicida Fx1]
          Length = 469

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/486 (11%), Positives = 141/486 (29%), Gaps = 94/486 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQ-KIGFVVNSERARSVGLDKKILDNLVSGAT 98
           + TV  V  + +           EL  +   +     N++  +   L ++ L +L+S + 
Sbjct: 52  NKTVAIVNSRPITSFELDQ----ELAKLEAMQPNSAFNTDPLK---LKRQALQDLISQSV 104

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L Q  E   +   + ++   I          N  S +     +   G++   Y       
Sbjct: 105 LLQLAERNNIMISNQQLDSAIQDIAA----KNGVSVESLKLNVEAAGMSFDSYKKRIRDQ 160

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L  + +                                   + +      S   + ++ +
Sbjct: 161 LMISQLQ---------------------------------QQAIAQQVYVSPEEIQKYIK 187

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           K++  +         Y L       K + ++  + +   +K  + +              
Sbjct: 188 KHQKEFDREMSPVKLYTL-------KNLIVALPDSKKARQKKIDLF-------------- 226

Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKK 335
                 +   ++  G   F ++ ++  ++ + +S G  S++   D    +        K 
Sbjct: 227 -----KKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKN 281

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK----DIANQMRITKASEKVKEDYKRL 391
              +     +    + ++ NI     +  ++V K     I  ++  +   E  K   +R 
Sbjct: 282 HQVSQPFIVNHTLQMIYIDNIDEKAPILSKKVTKYYVYAIEIKLDGSMNEEGAKSSLERA 341

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
           +  +  G    +++ +              G      E+ + P      F    +     
Sbjct: 342 KLAIESGQEFTKVALKYNQ-----DYDHPNGNFRWVSELDSPPSLPPAAFAQLKQLKENE 396

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV-SSKANQLVLEY 510
                     ++M ++  ++             D  +  K  K  E + S KA ++   +
Sbjct: 397 LSEPFQADGRTWMIIKYTKTKE----------YDAAEQLKEQKALEAIFSEKAQEIYKTW 446

Query: 511 SKEGKN 516
               K+
Sbjct: 447 LTSMKD 452


>gi|261380078|ref|ZP_05984651.1| conserved hypothetical protein [Neisseria subflava NJ9703]
 gi|284797294|gb|EFC52641.1| conserved hypothetical protein [Neisseria subflava NJ9703]
          Length = 290

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 79/245 (32%), Gaps = 23/245 (9%)

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
              +ML+   V+   V       L LDQ+  F                         A  
Sbjct: 56  ELRQMLTERQVISTVV-TQEAKKLKLDQSAEFKTALEQAR------ADAAKQGADKKATF 108

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
              +  ++++     +              ++  I   +++A Y      Y   +   + 
Sbjct: 109 KTEWAVFENDLLGQAF---------AAHIVRQNPIQEKDVKAAYNDFSNFYKGTQEVQLG 159

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD------ 327
           ++V  +   A +A   L   K F+ +  +     +    G   K Y+P   L +      
Sbjct: 160 EIVTDSSSNAQKAIADLDAKKSFVSVLNQYSIDEAAKKAGGIPKAYVPLKDLQESAPPLY 219

Query: 328 SIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +     KKG  T   +     Y + +V++ +     S++  K +I N ++  +    ++ 
Sbjct: 220 AAVKDLKKGAHTKTPLQNGNLYAVFYVNDRRNVTVPSYEASKNEIGNDLQAARVDAAIQS 279

Query: 387 DYKRL 391
             K+ 
Sbjct: 280 LLKKA 284


>gi|300697132|ref|YP_003747793.1| isomerase [Ralstonia solanacearum CFBP2957]
 gi|299073856|emb|CBJ53380.1| putative isomerase [Ralstonia solanacearum CFBP2957]
          Length = 269

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 70/229 (30%), Gaps = 14/229 (6%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT--QWFEKYKDNY 224
             V G + +   LD+A        +        + + A             + +      
Sbjct: 25  ALVNGTQVTQAQLDRAIAQSGAQANPQIAQALKQQLIARELFRQQAAKNPAYEKLPAVKL 84

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
              E          + +  K   I++++++A Y+         E +    +   +   A 
Sbjct: 85  AMQEAHDAVITQAWLKDNIKPAPITDEQVKARYDAIVASLGDKEYK-ARVIQLGDDVTAA 143

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLADSIFSLA 333
           +  + LK+G  F +LA++   + + +  G              K     + LA  I +L 
Sbjct: 144 QVLELLKQGGDFAKLAQQYSTAPNKVRGGDMDWVSFKVPAEEGKTQNLPLPLAREIAALG 203

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                T  +       I  V   +P+   ++  VK  I   +   +   
Sbjct: 204 IGATSTAPVEVGSQRYIVKVEAARPTQVPAYDMVKPAIRQALESAELER 252


>gi|237725280|ref|ZP_04555761.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D4]
 gi|265754206|ref|ZP_06089395.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
 gi|229436546|gb|EEO46623.1| peptidyl-prolyl cis-trans isomerase [Bacteroides dorei 5_1_36/D4]
 gi|263234915|gb|EEZ20470.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
          Length = 456

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 81/251 (32%), Gaps = 38/251 (15%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP----------SNAVLTQWFEKYKDNYR---AP 227
             ++ +    ++D I ++ + + +  +           S   + +++ K     R     
Sbjct: 73  AIQKLFLHQAAIDSIEVSEQEIISDVERRTNWLIDQIGSKEKVEEYYNKTSTQIREMLRE 132

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADE 285
             +    +     +    I+I+  E++  ++        F P    V+ +    +   +E
Sbjct: 133 NIRDGKTVQKMQQQIVGDIKITPAEVRRYFKDLPQDSIPFIPTQVEVQIITMEPKIPQEE 192

Query: 286 AF----------QSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
                       + +  G+  F  LA    E++G       LG   +  +     A+  F
Sbjct: 193 IERVKKTLRDYTERVTSGEIAFSTLARLYSEDEGSRRRGGELGFMGRAELV-PEYANVAF 251

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-------VSFQEVKKDIANQMRITKASEK 383
           +L      + ++   FG+ I  +   +               + K   A  +R+   +  
Sbjct: 252 NLQDPNKVSKIVESEFGFHIIQLIEKRGDRINTRHILLKPKVDEKDLEAALLRLDSIAND 311

Query: 384 VKEDYKRLEEF 394
           ++ +    ++ 
Sbjct: 312 IRNEKFTFDDA 322


>gi|327541927|gb|EGF28434.1| hypothetical protein RBWH47_04439 [Rhodopirellula baltica WH47]
          Length = 827

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 98/302 (32%), Gaps = 59/302 (19%)

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL--------------EEFLALGTS--- 400
            +    F++V+  IA +M    A +K+ +    +              E  +A+G S   
Sbjct: 500 ETKPQPFEDVRDQIATEMVSETARQKLDQTITEVYGLMRDYFSEMAVHEGNVAVGVSDES 559

Query: 401 -------MDEISRREKIVSIDLPLVDFA--GKDVKGKEVA--------AIPYKEQLLFRV 443
                  +  I+ ++ +      LV+    G D  G+             PY   +    
Sbjct: 560 DAPKRPDLKAIADQKGLGYGTTGLVNRVSIGDDPIGESYGLGQSLQRRGAPYYAMMFGAA 619

Query: 444 FG------KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
                        S   +V L +         E I A   +LEEV  +V    +T +   
Sbjct: 620 MQDGSSIPSQPEFSPQRSVDLENAKSYVSWKTEDIEAYTPELEEVRDEVILAIRTQEARN 679

Query: 498 EVSSKANQLVLEYSKEGKNFRDI-----GKNLGASLLTTNQIN---------RMDNENKF 543
            ++ KA + + E   +GK   D        NL   L     +N             E   
Sbjct: 680 -LAQKAAEGIAEAVGQGKKLADAIPKGKEANLHTDLGPFTWLNMVGMMQTSLGNVPELNA 738

Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS----YLTQMMN 599
            G + +  VFS  V  VK  P      Y V +    +    Q +++F      ++ Q++ 
Sbjct: 739 VGNEFMQSVFSTEVGSVKVTPNAPQSVYYVVQPIEFQPEVEQLREQFSQPQQRFMAQLIG 798

Query: 600 KD 601
            D
Sbjct: 799 DD 800



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 100/278 (35%), Gaps = 52/278 (18%)

Query: 30  LSDALFSVSGSS---TVVSVGRQKVPFSSFINSWKQELGMIS----------------QK 70
           L   L    GS+    V       +  S    + +Q   ++                 Q 
Sbjct: 67  LDTYLRRGGGSNSDPVVAEYDGVTLTQSRIARTTQQHRAVVGFLSDLGQETIRRGGVPQV 126

Query: 71  IGFVVNSE--RARSVGLDKK-ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
            GF  + E  + +S+G+D     +  ++        +  G + D   V   ++       
Sbjct: 127 PGFQYDQESGQIQSIGIDANPSEEATINTMRFYSEAKKAGFQLDDTMVRTWLS-----RY 181

Query: 128 KDNKFSHDVFVSRLAR---EGINEKEYIDHYT----KMLSRTDVVGMFVGGMRPSNLLLD 180
            D   S +   S L +     +   +  +         L +   +   + G  P +  L 
Sbjct: 182 TDGLLSDNEIGSMLMQFTKNQMGPIQLYEQLRMHLLADLYQRSAMVGLMNGRLPVSTPLA 241

Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIAD--PSNAVLTQWFEKYKD------------NY 224
           Q + F    ++ +++   +         D  PS + +T+ +E  KD             +
Sbjct: 242 QWRNFLKTNQSATINAYGVLVEEYIDQTDESPSKSQITEVYEAGKDLLAYPNDQDPEPKF 301

Query: 225 RAPEYKRISYILFDVHEK--EKKIEISNDELQAEYEKN 260
           R P+  +I Y++ D++E    +K ++S+++++AEYE+ 
Sbjct: 302 RRPDSAKIEYLVADLNEFVEREKAKLSDEQIRAEYERR 339



 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 6/134 (4%)

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           +    ++T   +EV+ ++   +R  +A    ++  + + E +  G  + +   + K  ++
Sbjct: 651 TEDIEAYTPELEEVRDEVILAIRTQEARNLAQKAAEGIAEAVGQGKKLADAIPKGKEANL 710

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQL------LFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
              L  F   ++ G    ++    +L        +     +  S   T   P   Y  VQ
Sbjct: 711 HTDLGPFTWLNMVGMMQTSLGNVPELNAVGNEFMQSVFSTEVGSVKVTPNAPQSVYYVVQ 770

Query: 468 IKESIPARDRKLEE 481
             E  P  ++  E+
Sbjct: 771 PIEFQPEVEQLREQ 784


>gi|116051907|ref|YP_789250.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587128|gb|ABJ13143.1| putative peptidyl-prolyl cis-trans isomerase [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 272

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 20/182 (10%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E   ++   PE  RI  +L    E+ +  E   D  +  Y  N  +   P    +  ++ 
Sbjct: 69  EARCEDGETPEEARIRQLL---EEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLL 125

Query: 278 P-----------NQKEADEAFQSLKKG-KKFIQLAEEQGKSLS---DISLGSFSKEYIPD 322
                        +K+A E    L+   ++F+ LA       S      LG         
Sbjct: 126 ACAPDDLEGRETARKQAAELLDELRGHPERFVDLARRFSACPSKEAGGDLGWIEPGQTV- 184

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +   A  G     +   +G  +  +   +    + F   +  IA  ++      
Sbjct: 185 PEFEKRLLRRA-PGLLEHPLESRYGLHVVELLGREGGEPLDFDAARAQIAAHLQAQVLQR 243

Query: 383 KV 384
            V
Sbjct: 244 AV 245


>gi|253567245|ref|ZP_04844695.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
 gi|251944076|gb|EES84595.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
          Length = 456

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/330 (11%), Positives = 101/330 (30%), Gaps = 51/330 (15%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK---KIEISNDELQAEYEK--NKEK 263
           +   L ++F K     R    +     L     ++K    I+++  E++  +++      
Sbjct: 112 TREKLEEYFNKTSTQIREAMRENARDGLIVQRMQQKLVGDIKVTPAEVRRYFKELPQDSI 171

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQ----------SLKKGK-KFIQLA----EEQGKSLS 308
            + P    V+ +    +    E              + KG+  F  LA    E++G ++ 
Sbjct: 172 PYVPTQVEVQIITQQPKIPVAEIEDVKRRLREYTDRINKGESDFSTLALLYSEDRGSAIK 231

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
               G   K  +     A+  F+L      + ++   +G+ I  +   +     +     
Sbjct: 232 GGETGFMGKGQMV-PEYANVAFNLQDTKKISKIVESEYGFHIIQLIEKRGDRINT----- 285

Query: 369 KDIANQMRITKASEKVKEDYKR-----LEEFLALGTSMDEISRRE----------KIVSI 413
               + +   K S+K  ++          +  +   + D+ +              ++  
Sbjct: 286 ---RHILLKPKVSDKELDEANARLDSIANDIRSDKFTFDQAASALSQDKDTRNNHGLMQN 342

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQL--LFRVFGKDDPLSKDHTVALPD-----GSYMWV 466
                         +E+A +  K  +  + + F   +P       A+         +   
Sbjct: 343 PQNQTAKFEMQDLPQEIAKVVDKMNIGEISKAFTMVNPKDGKEVCAIVKLKSRINGHKAT 402

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
              +    ++  L++   +  + W   K  
Sbjct: 403 ITDDYQNLKEIVLDKRREEALQKWIVEKQK 432


>gi|255011717|ref|ZP_05283843.1| putative exported peptidyl-prolyl cis-trans isomerase [Bacteroides
           fragilis 3_1_12]
 gi|313149552|ref|ZP_07811745.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
 gi|313138319|gb|EFR55679.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
          Length = 456

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/373 (9%), Positives = 113/373 (30%), Gaps = 44/373 (11%)

Query: 157 KMLSRTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
           + L+   +      +  +      +   +R  ++  +    + +   + A  + ++  + 
Sbjct: 71  EELAVQKLYMHQAVLDSIEVPESEV--IQRVDYQINNYIQALGSRERMEAEFNKTSTQIR 128

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTV 272
           +   +          +  + +     +    I+++  E++  ++        + P    V
Sbjct: 129 EALRENA--------RDGAIVQRMQQKLVGDIKVTPAEVRRYFKDLPQDSIPYVPTQVEV 180

Query: 273 EQLVFPNQKEADEAFQ----------SLKKGK-KFIQLA----EEQGKSLSDISLGSFSK 317
           + +    +    E              + KG+  F  LA    E++G ++     G   K
Sbjct: 181 QIITQQPKVPISEIEDVKRRLREYTDRINKGESDFSTLALLYSEDRGSAIKGGETGFMGK 240

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-------VSFQEVKKD 370
             +     A+  F+L      + ++   +G+ I  +   +                 K+ 
Sbjct: 241 GQMV-PEYANVAFNLQDTKKISKIVESEYGFHIIQLIEKRGDRINTRHILLKPKVSDKEL 299

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
                R+   +  ++ D    ++  A  +   +      ++   +            +E+
Sbjct: 300 NEANARLDSIANDIRSDKFTFDQAAAALSQDKDTRNNHGLMQNPMNQTAKFEMQDLPQEI 359

Query: 431 AAIPYKEQL--LFRVFGKDDPLSKDHTVALPD-----GSYMWVQIKESIPARDRKLEEVL 483
           A +  K  +  + + F   +P       A+         +      +    ++  L++  
Sbjct: 360 AKVVDKMNIGEISKAFTMVNPKDGKEVCAIVKLKARINGHKATITDDYQNLKEIVLDKRR 419

Query: 484 TDVKKDWKTVKTA 496
            +  + W   K  
Sbjct: 420 EEALQKWIVEKQK 432


>gi|299768860|ref|YP_003730886.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter sp.
           DR1]
 gi|298698948|gb|ADI89513.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter sp.
           DR1]
          Length = 96

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
           V  ++  ++  A++  + L+ G  F ++A++      +     LG   K  +    +   
Sbjct: 6   VRHILVKDKDLAEQLKKKLQNGADFAKIAKQYSTCNSAKRGGELGEVKKGQLV-PVIDKV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +F+ A++      I   FGY +  V 
Sbjct: 65  VFTAAER-VLQGPIKSQFGYHLLEVK 89


>gi|226314601|ref|YP_002774497.1| hypothetical protein BBR47_50160 [Brevibacillus brevis NBRC 100599]
 gi|226097551|dbj|BAH45993.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 214

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 60/215 (27%), Gaps = 64/215 (29%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           ++ + + +L     + G   +  +      +V+ G   +  +      K+  G       
Sbjct: 6   ISMLTVAILVTGLAVLGFYQSW-AKGNDPVLVTAGDTSITQNQLYGEMKKTYG------- 57

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                         K+ +  LV+ A + Q  +   +      +  EI        +    
Sbjct: 58  --------------KQTIHELVAEALIKQEAKAQNVAVTQEDMNKEIDSM---KKQVG-- 98

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           S + F + L   G+ E +  D    +++R  ++                           
Sbjct: 99  SPEAFQNYLKSMGMTEAQLRDKLNVLMTRDKLLD-------------------------- 132

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
                  +  P     +   +  +++  K    +P
Sbjct: 133 -------KAFP----VTEEQIKTYYDTNKAQLGSP 156


>gi|212690536|ref|ZP_03298664.1| hypothetical protein BACDOR_00018 [Bacteroides dorei DSM 17855]
 gi|237708008|ref|ZP_04538489.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
 gi|212666885|gb|EEB27457.1| hypothetical protein BACDOR_00018 [Bacteroides dorei DSM 17855]
 gi|229457994|gb|EEO63715.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
          Length = 456

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 81/251 (32%), Gaps = 38/251 (15%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP----------SNAVLTQWFEKYKDNYR---AP 227
             ++ +    ++D I ++ + + +  +           S   + +++ K     R     
Sbjct: 73  AIQKLFLHQAAIDSIEVSEQEIISDVERRTNWLIDQIGSKEKVEEYYNKTSTQIREMLRE 132

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADE 285
             +    +     +    I+I+  E++  ++        F P    V+ +    +   +E
Sbjct: 133 NIRDGKTVQKMQQQIVGDIKITPAEVRRYFKDLPQDSIPFIPTQVEVQIITMEPKIPQEE 192

Query: 286 AF----------QSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
                       + +  G+  F  LA    E++G       LG   +  +     A+  F
Sbjct: 193 IERVKKTLRDYTERVTSGEIAFSTLARLYSEDEGSRRRGGELGFMGRAELV-PEYANVAF 251

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-------VSFQEVKKDIANQMRITKASEK 383
           +L      + ++   FG+ I  +   +               + K   A  +R+   +  
Sbjct: 252 NLQDPNKVSKIVESEFGFHIIQLIEKRGDRINTRHILLKPKVDEKDLEAALLRLDSIAND 311

Query: 384 VKEDYKRLEEF 394
           ++ +    ++ 
Sbjct: 312 IRNEKFTFDDA 322


>gi|121591803|ref|ZP_01678995.1| survival protein SurA [Vibrio cholerae 2740-80]
 gi|121546332|gb|EAX56604.1| survival protein SurA [Vibrio cholerae 2740-80]
          Length = 244

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 17/141 (12%)

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAK 334
             +  A++    L+ G  F Q+A    K   +L     G   KE +P    AD I  +  
Sbjct: 6   TAETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQN 63

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKED 387
           KG          G+ I  + ++K   TV+  EV       K  I   +    A +++ E 
Sbjct: 64  KGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEF 121

Query: 388 YKRLEEFLALGTSMDEISRRE 408
            +R++       +  E++++ 
Sbjct: 122 VQRIKN---GEVTFAELAQQY 139



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 31/148 (20%)

Query: 272 VEQLVFP---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD----ISLGSFSK 317
              ++            QK+ +E  Q +K G+  F +LA++  +          LG  + 
Sbjct: 98  ARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQTP 157

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS---------------FTV 362
           + +        I +L   G  +       G+ I  V + +                 F  
Sbjct: 158 D-LYVPEFKHQIETLP-VGQISEPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNR 215

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390
            F E       ++R +   E +K++   
Sbjct: 216 KFNEEASAWLQELRASAFVEVLKDEKDE 243


>gi|296134820|ref|YP_003642062.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
 gi|295794942|gb|ADG29732.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
          Length = 282

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 7/167 (4%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           +R +          +   IS + ++  YEK+     + +   +  +V    +EA     +
Sbjct: 97  RRQALAQLSAEAFLQAHPISQEAIRQAYEKHIADLPTRQYW-LRWIVVKTPEEAKRVLDA 155

Query: 290 LKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           L+ GK  F  LA       +     +LG  S++ +    L   +    + G     I   
Sbjct: 156 LRGGKQTFTALALHHSIGQNAELGGALGWQSEQAMSAEVLG--VVRKLQPGQVAGPIALG 213

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               I  +   +      F+++K  I  Q+R       V+E  K  +
Sbjct: 214 ENLAIIQLVAERTPPKPDFEQLKPQIEQQLRQAALQAHVQELAKNAK 260


>gi|210622794|ref|ZP_03293348.1| hypothetical protein CLOHIR_01296 [Clostridium hiranonis DSM 13275]
 gi|210154050|gb|EEA85056.1| hypothetical protein CLOHIR_01296 [Clostridium hiranonis DSM 13275]
          Length = 144

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKK 335
           +K A+E  +    G+ F  LA++             LG F+K+   D      +F L KK
Sbjct: 29  KKTAEEVQKRAASGEDFAALAKKYSDDKKTGEKGGDLGYFTKDA-KDALFTREVFKL-KK 86

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GD + +I  + GY I  +++IK S      + K++I  ++   K  + V++  ++ E
Sbjct: 87  GDVSKLIATNNGYEIVKINDIK-SEIKELDKCKEEIKKKILDEKYIKHVEQLVEKAE 142


>gi|167043769|gb|ABZ08460.1| putative PPIC-type PPIASE domain protein [uncultured marine
           microorganism HF4000_APKG3D20]
          Length = 625

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 63/189 (33%), Gaps = 18/189 (9%)

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           P +     A       R+ +   +  R+     + ++ +        K        +   
Sbjct: 442 PPDANATAAYEQARAKRAGEIAGIKARNAAKQKEYNDKLKKA-----KKRVDELNTRLAP 496

Query: 234 YILFDVHEKEKKIEISNDE--LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           +     +E   KI +   +   +     +    F    R    +    ++EA    + L+
Sbjct: 497 WYYVISNEVYDKIHLERKDFVARKIAASHVLVAFKGASRAKASIT-RTKQEAKARAEELR 555

Query: 292 K-----GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           K     GK F ++A +      +     LG F  + +     +++ F+L + G  + V+ 
Sbjct: 556 KQIVEGGKDFAEMASKNSDGPSASEGGDLGEFDFDGMAKP-FSEAAFAL-EVGAVSVVVE 613

Query: 344 GSFGYVIAH 352
             FG+ +  
Sbjct: 614 TEFGFHVIK 622


>gi|126642856|ref|YP_001085840.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii ATCC 17978]
          Length = 101

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
           V  ++  ++  A++  + L+ G  F +LA++      +     LG   K  +    +   
Sbjct: 11  VRHILVKDKDLAEQLKKKLQSGADFAKLAKQYSTCNSAKRGGELGEVKKGQLV-PVIDKV 69

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +F+ A++      I   FGY +  V 
Sbjct: 70  VFTAAER-VLQGPIKSQFGYHLLEVK 94


>gi|319944662|ref|ZP_08018929.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
           51599]
 gi|319742101|gb|EFV94521.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
           51599]
          Length = 248

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 54/144 (37%), Gaps = 16/144 (11%)

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---------ADEAFQSLKKG-KKFI 297
           +     +  YE+  E++        + ++F   +          A E    L++  ++F 
Sbjct: 73  VDEASCRRHYEQYPERFRVGGWVDADHILFAVNERTPLDALRLVAKETLALLQEHPERFE 132

Query: 298 QLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHV 353
            +A E+     + +  +LG   +          +++ +A  G     +I   +G  I  V
Sbjct: 133 AMAAERSNCPSAENGGALGRMQRGETV-PEFEAALWRIA-PGTIADSLIETRYGLHIIRV 190

Query: 354 SNIKPSFTVSFQEVKKDIANQMRI 377
           +       + F++V++ IA  +  
Sbjct: 191 NRRHEGQQLPFEQVQEGIAQALTA 214


>gi|188993651|ref|YP_001905661.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167735411|emb|CAP53626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthomonas
           campestris pv. campestris]
          Length = 294

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 62/206 (30%), Gaps = 34/206 (16%)

Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
           V   A    A +   F+ +  +Y   +   +   L    +     E+S            
Sbjct: 118 VRQAAQIDAAQVQAQFDAHPHDYDEVQLSHVFVALHPQSDARGGTELSE----------- 166

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI-SLGSFSKEYI 320
                                A +  Q L  G  F +LA       S     G  S  ++
Sbjct: 167 ---------------LQAAARAQQLKQQLDAGTPFAELARRDSDDASTASDGGQLSSIFL 211

Query: 321 PDVS--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
            +V+   A S+ +L   G  +  + G  GY +  +    P+   +F   +  I  Q+R  
Sbjct: 212 RNVADVFAASVQALG-VGQVSAPVRGPDGYHLIRLDARTPA---TFDTARGQIEVQLRAQ 267

Query: 379 KASEKVKEDYKRLEEFLALGTSMDEI 404
            A     E  ++         +++  
Sbjct: 268 -AETAALEQLRQANPLRFDHAALEAA 292


>gi|119597662|gb|EAW77256.1| hCG1789710 [Homo sapiens]
          Length = 131

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  +++    +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 39  KVRHILWEKHGKIMEAMEKLKSGMRFNEVATQYSEDKARQGGVLGWMTRGSMVGP-FQEA 97

Query: 329 IFSLA----KKGDFTPV-IHGSFGYVIAHVSNIK 357
            F+L      K  FT   +   FGY I  V   K
Sbjct: 98  AFALPISVMDKPVFTDPAVKTKFGYHIIMVEGRK 131


>gi|70730940|ref|YP_260681.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas fluorescens
           Pf-5]
 gi|68345239|gb|AAY92845.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas fluorescens
           Pf-5]
          Length = 91

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++    +EA++  Q + KG+ F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKTAEEAEQLKQRIAKGEAFDVLAKKYSTCPSGKRGGDLGEVRPGQMVG-AIDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHV 353
            IF    +      I   FGY +  V
Sbjct: 63  VIFKKPLR-TVHGPIKSKFGYHLVQV 87


>gi|15603073|ref|NP_246145.1| hypothetical protein PM1208 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721561|gb|AAK03292.1| SurA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 311

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/395 (11%), Positives = 110/395 (27%), Gaps = 98/395 (24%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+++I   S   +    L +               + +    V +V    V  S    + 
Sbjct: 1   MMKMINVKS---IFWAILGLFI---------YVSTAQAAERVVATVNGVPVLESQVKKNM 48

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            ++                       +  LD ++    + Q I++ G++ ++ +V   I 
Sbjct: 49  GKKGQY--------------------QVALDKVIDDILVQQAIQNSGIKVNYAQVDQIIE 88

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
                    N  ++   +  L  +GI+   Y       +   ++    +G     ++  +
Sbjct: 89  GIAA----QNGLTYGQLLDALDYQGISYNAYRQQIANQILMGEIRNQAIGQSI--DVTRE 142

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           Q +    +  +            A    +   ++                 + +IL  ++
Sbjct: 143 QVEALSNQLLN-----------QAKQAGTEKKISA------------PQYEVRHILLKLN 179

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQL 299
                 +                                + +  +    +  GK  F   
Sbjct: 180 PLLNDAQ-------------------------------AKAQLTQIRADIIAGKMSFADA 208

Query: 300 AEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A    K     + G       P+    +   +I +  KKG  +      FG+ I  V+N 
Sbjct: 209 ALHYSKDYLSGANGGSLGFAFPEAYVGAFQKAILT-TKKGVISAPFKTEFGWHILEVTNT 267

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     +    ++    Q+   +  +  K+  K L
Sbjct: 268 REG-DKTIDVYRQKAYEQLVNQQVKDVEKDWVKAL 301


>gi|301164816|emb|CBW24376.1| putative exported isomerase [Bacteroides fragilis 638R]
          Length = 517

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/479 (11%), Positives = 136/479 (28%), Gaps = 86/479 (17%)

Query: 195 IVLNNRHVPAIADPSN--AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
           + L+      +   S+    +  ++     +Y                            
Sbjct: 69  LKLSAAQKAGLDTVSDFRTEMENYYRALSRSYLT------------------DSATDEAY 110

Query: 253 LQAEYEKNKEKYFSPEIRTVE-----------QLVFPNQKEADEAFQSLKKGKK--FIQL 299
            +  Y++ K +  + E++ +              +   Q   D  +  L+      F  L
Sbjct: 111 AKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPHHLREAQILMDSLYHVLETHPDIDFRTL 170

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
             +      +  +G             +  FSL K G+++       G  I  V+  +  
Sbjct: 171 VNKYSDDKKEFWMGWLQTS----QEFEEVAFSL-KDGEYSKPFFTPKGIQIIKVTGRRE- 224

Query: 360 FTVSFQEVKKDIANQMRI----TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
               F++++ ++ +++       K  E      K   ++      M+E+        + L
Sbjct: 225 -IPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKSTCQYTPDKAGMEEL--------LAL 275

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
                    + GK      ++        G    L+     ++ D  Y   ++++  P  
Sbjct: 276 GRTSRTLFTLDGKSFTGKDFERFADAHPMGIKRQLNAFVVKSILD--YENNRLEQKYPDF 333

Query: 476 DRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
              L++   D +       ++ +   S +  L   + +   ++         ++L     
Sbjct: 334 RLALQQRRDDLLLAAITRRESRQVSLSDSVALKAFFKEHRTDYNWDSPRYRGAVLHGTHK 393

Query: 535 NRMDNENKFFG-------YDGISQVFSGPVE----MVKCFPIENGLSYVVFKVT------ 577
             + +  KF          D I   F+ P       ++      G +  V K+       
Sbjct: 394 KTLKSARKFLKKLPEEEWKDAIRLTFNTPASPATIRIEQGTFAEGDNVFVDKLVFKKGDF 453

Query: 578 -------------NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
                          K GP    +  I  L +     L       L++   V ++  ++
Sbjct: 454 EPLKSYPFTVVLGEKKKGPESYHE-IIPQLIRDYQNHLDALWTERLRASAKVEINQEVL 511


>gi|121702709|ref|XP_001269619.1| peptidyl-prolyl cis-trans isomerase [Aspergillus clavatus NRRL 1]
 gi|119397762|gb|EAW08193.1| peptidyl-prolyl cis-trans isomerase [Aspergillus clavatus NRRL 1]
          Length = 126

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF ++A E  +  +    SLG   +  + +     + 
Sbjct: 37  VRHILCEKFSKKEEALEKLRNGAKFDEVAREFSEDKARQGGSLGWKVRGSL-NGDFEKAA 95

Query: 330 FSLAKKGDFTPVI---HGSFGYVIAHVSNIK 357
           + L      +P        FGY I  V   K
Sbjct: 96  YDLEPSTTASPKYVEVKTGFGYHIIMVEGRK 126


>gi|115479119|ref|NP_001063153.1| Os09g0411700 [Oryza sativa Japonica Group]
 gi|50252332|dbj|BAD28365.1| putative peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           [Oryza sativa Japonica Group]
 gi|113631386|dbj|BAF25067.1| Os09g0411700 [Oryza sativa Japonica Group]
 gi|215764953|dbj|BAG86650.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215768084|dbj|BAH00313.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 148

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA++ L+ G           +F ++A+E  +  S      LG F +
Sbjct: 50  KARHVLCEKQGKINEAYKKLQDGWLDNGDKVPPAEFAKIAQEYSECPSGKKGGDLGWFPR 109

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      D  FS    G  +     + GY        K
Sbjct: 110 GKMAGP-FQDVAFS-TPVGATSAPFKSTHGYHFILCEGRK 147


>gi|257899550|ref|ZP_05679203.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com15]
 gi|257837462|gb|EEV62536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com15]
          Length = 340

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 80/247 (32%), Gaps = 32/247 (12%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +  D+  M  G +  S+   +       ++     I+    +       ++  +   ++K
Sbjct: 30  TNKDIATMKGGTITVSDFYDEAKLESSNQSLVQRMIIYKVFNNKYGDKVTDKQVDAEYDK 89

Query: 220 YKDN-------------YRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              +             Y    YK  I   L      +  ++I++D+L+  +E       
Sbjct: 90  QAKSLGDTFESQLETAGYTKDSYKEYIRNNLAFEAGLKAHVDITDDDLKTAWESFHP--- 146

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIP 321
                  + +   ++ EA +  +S   G  F +LA+++         G   K        
Sbjct: 147 ---EVEAQIIKLSSEDEAKDVKKSADDGDDFSKLAKDKSTDSETKEDGGKVKFDSTTTTI 203

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFG------YVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              + ++ F L K G+ + VI  +        Y +  +   +        + K  +    
Sbjct: 204 PAEVKEAAFKL-KDGEVSDVITATNTTSYATEYYVVKMVKNQNKGN-DMDKYKDQLKEIA 261

Query: 376 RITKASE 382
             TK S+
Sbjct: 262 TETKLSD 268


>gi|258542094|ref|YP_003187527.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633172|dbj|BAH99147.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636229|dbj|BAI02198.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639284|dbj|BAI05246.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642338|dbj|BAI08293.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645393|dbj|BAI11341.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648448|dbj|BAI14389.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651501|dbj|BAI17435.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654492|dbj|BAI20419.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-12]
          Length = 454

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 92/320 (28%), Gaps = 82/320 (25%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           +  +    +      N  K    + +   G  +  +      L  +I+  L+      Q 
Sbjct: 55  LAVINSIPLTKRDVDNRGK----LFALSTGLPLTPDL--MARLRPQIIRQLIDERLRTQE 108

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM-LSR 161
           I    +     ++ G I                       R G+ E    +H  +  +S 
Sbjct: 109 ILSRHINVPPEQIAGAITNIE------------------RRNGMPEGTLREHLAQDGVSL 150

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           T ++                          + +I +  + + A +  S   +     + +
Sbjct: 151 TTLIDQI--------------------RVQIGWIQVLRQELGARSRVSAQDIA----QRQ 186

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
              +  E +                  +  EL   + K ++     E       V     
Sbjct: 187 AALKREEGR------------------TEYELAEIFVKVEDPRHDQEELDFTNTVI---- 224

Query: 282 EADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAK-KGD 337
                 Q L+KG  F  +A +  +   +L   S+G   ++ + D ++   +  +    G 
Sbjct: 225 ------QELRKGAPFPIVAAQFSQSQTALDGGSMGWVQEDEL-DPAVVQVVRQMPVGVGA 277

Query: 338 FTPVIHGSFGYVIAHVSNIK 357
            +  I    GYVI  ++  +
Sbjct: 278 ISNPIKVPGGYVIITLNGKR 297


>gi|195620008|gb|ACG31834.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Zea mays]
          Length = 151

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA++ L+ G           +F ++A+E  +  S      LG F +
Sbjct: 53  KARHVLCEKQGKINEAYKKLQDGWLNNGDKVPPAEFAKVAQEYSECPSGKKGGDLGWFPR 112

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      +  F+   +G  +     + GY        K
Sbjct: 113 GKMAGP-FQEVAFN-TPEGTVSAPFKSTHGYHFILCEGRK 150


>gi|322385853|ref|ZP_08059496.1| peptidyl-prolyl cis-trans isomerase [Streptococcus cristatus ATCC
           51100]
 gi|321270138|gb|EFX53055.1| peptidyl-prolyl cis-trans isomerase [Streptococcus cristatus ATCC
           51100]
          Length = 376

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 79/242 (32%), Gaps = 25/242 (10%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +V M    +  S            +   +   +            ++  + + FEK K  
Sbjct: 48  IVTMKGETITVSEFYDQVKNNGSSQQVLLQMAIKQVFEEKYGKKVTDKEVEEAFEKMKSA 107

Query: 224 YRAPEYKRISYILFDVHEKEKKI--------EISNDELQAEYEKNKEKYF---SPEIRTV 272
           Y +     ++           +I         +     +   + N + +F   +PE+ T 
Sbjct: 108 YGSAFQNVLAQSGMTEDAYRDQIRANKLVEYAVKKAAEKELTDDNYKAFFETYTPEV-TA 166

Query: 273 EQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI-- 329
           + +   ++++A E  +  K  G  F QLA+E          G   K      ++AD++  
Sbjct: 167 QIIKVDSEEKAKEVLEKAKAEGADFGQLAKENSTDKDTKDKGGEVKFDSTSTTVADAVKK 226

Query: 330 --FSLAKKGDFTPVIHGSF------GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
             F+L + G  + VI           Y I  +          + + KK +   +   K +
Sbjct: 227 ATFALEENG-VSDVITVRGKQNYSASYYIVKLVKKTQKSAK-WTDYKKQLKEGILTQKQN 284

Query: 382 EK 383
           + 
Sbjct: 285 DA 286


>gi|307297956|ref|ZP_07577760.1| conserved hypothetical protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916042|gb|EFN46425.1| conserved hypothetical protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 339

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/382 (13%), Positives = 127/382 (33%), Gaps = 91/382 (23%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            K F+  L +  +         ++S +     V  + +   +F++        IS++I  
Sbjct: 1   MKKFIAALILLLITAVALSQTETLSETGIAAEVNGEIITMDTFLSKVLPNYTEISKRIEE 60

Query: 74  V--------VNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
           V        +N+E  + +    ++  L+ L+    L Q+ +++G+EAD            
Sbjct: 61  VDPLFSEMLLNTEAGQKLLEEYERNSLEALIEETLLIQYAKEVGIEAD------------ 108

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
                                       I+   +                 S  ++D   
Sbjct: 109 ----------------------------IEALRE---------------VVSKSIMDTLT 125

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
               E    D   +               L  + +    +Y A   + ++Y        E
Sbjct: 126 ELQIEKSDADLFYV---------------LKGYIDG-LSSYEAKVVRDLAYKEVLSSLYE 169

Query: 244 K---KIEISNDELQAEYEKNKEKYFSPEIR-TVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                  ++ +E++  Y  N  +Y   E R  ++ L+F +  EA   +++  +      +
Sbjct: 170 AVTVNATVTEEEIEQYYLANSSRYAVEEERADMKVLLFDSFSEAYSVWKAASRDANPSSV 229

Query: 300 AEEQGKSLSDISLGSFSKEYIP--DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                 +  ++  GS+++E I   +  L  S+F   +    + V+     Y + ++ +  
Sbjct: 230 L----DTFPEVQSGSYTREEIEALNPELVKSLFKPTEGELLSSVVTLDNKYAVIYLESYS 285

Query: 358 PSFTVSFQEVKKDIANQMRITK 379
           P+     ++V+++I   +   K
Sbjct: 286 PAGAKGIEDVREEIQGILISEK 307


>gi|329114153|ref|ZP_08242915.1| Chaperone SurA [Acetobacter pomorum DM001]
 gi|326696229|gb|EGE47908.1| Chaperone SurA [Acetobacter pomorum DM001]
          Length = 454

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 92/320 (28%), Gaps = 82/320 (25%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           +  +    +      N  K    + +   G  +  +      L  +I+  L+      Q 
Sbjct: 55  LAVINSIPLTKRDVDNRGK----LFALSTGLPLTPDL--MARLRPQIIRQLIDERLRTQE 108

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM-LSR 161
           I    +     ++ G I                       R G+ E    +H  +  +S 
Sbjct: 109 ILSRHINVPPEQIAGAITNIE------------------RRNGMPEGTLREHLAQDGVSL 150

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           T ++                          + +I +  + + A +  S   +     + +
Sbjct: 151 TTLIDQI--------------------RVQIGWIQVLRQELGARSRVSAQDIA----QRQ 186

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
              +  E +                  +  EL   + K ++     E       V     
Sbjct: 187 AALKREEGR------------------TEYELAEIFVKVEDPRHDQEELDFTNTVI---- 224

Query: 282 EADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAK-KGD 337
                 Q L+KG  F  +A +  +   +L   S+G   ++ + D ++   +  +    G 
Sbjct: 225 ------QELRKGAPFPIVAAQFSQSQTALDGGSMGWVQEDEL-DPAVVQVVRQMPVGVGA 277

Query: 338 FTPVIHGSFGYVIAHVSNIK 357
            +  I    GYVI  ++  +
Sbjct: 278 ISNPIKVPGGYVIITLNGKR 297


>gi|293571342|ref|ZP_06682373.1| foldase protein PrsA [Enterococcus faecium E980]
 gi|291608558|gb|EFF37849.1| foldase protein PrsA [Enterococcus faecium E980]
          Length = 336

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 80/247 (32%), Gaps = 32/247 (12%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +  D+  M  G +  S+   +       ++     I+    +       ++  +   ++K
Sbjct: 26  TNKDIATMKGGTITVSDFYDEAKLESSNQSLVQRMIIYKVFNNKYGDKVTDKQVDAEYDK 85

Query: 220 YKDN-------------YRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              +             Y    YK  I   L      +  ++I++D+L+  +E       
Sbjct: 86  QAKSLGDTFESQLETAGYTKDSYKEYIRNNLAFEAGLKAHVDITDDDLKTAWESFHP--- 142

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIP 321
                  + +   ++ EA +  +S   G  F +LA+++         G   K        
Sbjct: 143 ---EVEAQIIKLSSEDEAKDVKKSADDGDDFSKLAKDKSTDSETKEDGGKVKFDSTTTTI 199

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFG------YVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              + ++ F L K G+ + VI  +        Y +  +   +        + K  +    
Sbjct: 200 PAEVKEAAFKL-KDGEVSDVITATNTTSYATEYYVVKMVKNQNKGN-DMDKYKDQLKEIA 257

Query: 376 RITKASE 382
             TK S+
Sbjct: 258 TETKLSD 264


>gi|77407178|ref|ZP_00784161.1| rotamase family protein [Streptococcus agalactiae H36B]
 gi|77174213|gb|EAO77099.1| rotamase family protein [Streptococcus agalactiae H36B]
          Length = 295

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 84/244 (34%), Gaps = 22/244 (9%)

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           T+VV M    +  S+           +   +  I+            S+  +++ + K  
Sbjct: 17  TNVVTMKGDTITVSDFYDQVKTSKAAQQSMLTLILSRVFDTQYGDKVSDKKVSEAYNKTA 76

Query: 222 DNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
             Y              PE  +       + E   K     +  +A Y++  + Y +PE 
Sbjct: 77  KGYGNSFSSALSQAGLTPEGYKQQIRTTMLVEYAVKEAAKKELTEANYKEAYKNY-TPET 135

Query: 270 RTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLS-DISLGSFSKEYIPDVSLAD 327
            +V+ +    + +A    + +K  G  F ++A+E+  +    +     S        +  
Sbjct: 136 -SVQVIKLDAEDKAKSVLKDVKADGADFAKIAKEKTTATDKKVEYKFDSAGTTLPKEVMS 194

Query: 328 SIFSLAKKG---DFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           + F L K G     + V   ++   Y I  V++     +  ++  K  +   +   K S+
Sbjct: 195 AAFKLDKNGVSDVVSTVDSTTYKTSYYIIKVTDKTEKKS-DWKSYKNRLKEVILKDKTSD 253

Query: 383 KVKE 386
           +  +
Sbjct: 254 RAFQ 257


>gi|71734207|ref|YP_274523.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257484583|ref|ZP_05638624.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|298486848|ref|ZP_07004904.1| Peptidyl-prolyl cis-trans isomerase ppiC [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|302189916|ref|ZP_07266589.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae 642]
 gi|71554760|gb|AAZ33971.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298158715|gb|EFH99779.1| Peptidyl-prolyl cis-trans isomerase ppiC [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320324315|gb|EFW80394.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320328562|gb|EFW84564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330885577|gb|EGH19726.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330890135|gb|EGH22796.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330901181|gb|EGH32600.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330944620|gb|EGH46570.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           pisi str. 1704B]
 gi|330980410|gb|EGH78513.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           aptata str. DSM 50252]
 gi|330988820|gb|EGH86923.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331008130|gb|EGH88187.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 91

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++    +EA++    + KG+ F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKTAEEAEQLKLRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVG-AIDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHV 353
            IF    +      I   FGY +  V
Sbjct: 63  VIFKKPLR-VVHGPIKSKFGYHLVQV 87


>gi|76788083|ref|YP_329554.1| foldase protein PrsA [Streptococcus agalactiae A909]
 gi|123601968|sp|Q3K1P9|PRSA_STRA1 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|76563140|gb|ABA45724.1| foldase protein PrsA [Streptococcus agalactiae A909]
 gi|319744849|gb|EFV97187.1| peptidyl-prolyl cis-trans isomerase [Streptococcus agalactiae ATCC
           13813]
          Length = 309

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 84/244 (34%), Gaps = 22/244 (9%)

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           T+VV M    +  S+           +   +  I+            S+  +++ + K  
Sbjct: 31  TNVVTMKGDTITVSDFYDQVKTSKAAQQSMLTLILSRVFDTQYGDKVSDKKVSEAYNKTA 90

Query: 222 DNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
             Y              PE  +       + E   K     +  +A Y++  + Y +PE 
Sbjct: 91  KGYGNSFSSALSQAGLTPEGYKQQIRTTMLVEYAVKEAAKKELTEANYKEAYKNY-TPET 149

Query: 270 RTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLS-DISLGSFSKEYIPDVSLAD 327
            +V+ +    + +A    + +K  G  F ++A+E+  +    +     S        +  
Sbjct: 150 -SVQVIKLDAEDKAKSVLKDVKADGADFAKIAKEKTTATDKKVEYKFDSAGTSLPKEVMS 208

Query: 328 SIFSLAKKG---DFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           + F L K G     + V   ++   Y I  V++     +  ++  K  +   +   K S+
Sbjct: 209 AAFKLDKNGVSDVVSTVDSTTYKTSYYIIKVTDKTEKKS-DWKSYKNRLKEVILKDKTSD 267

Query: 383 KVKE 386
           +  +
Sbjct: 268 RAFQ 271


>gi|254670179|emb|CBA05269.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis alpha153]
 gi|261391871|emb|CAX49330.1| conserved hypothetical protein [Neisseria meningitidis 8013]
 gi|319411179|emb|CBY91584.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
 gi|325128932|gb|EGC51786.1| hypothetical protein NMXN1568_0308 [Neisseria meningitidis N1568]
 gi|325130876|gb|EGC53606.1| hypothetical protein NMBOX9930304_0329 [Neisseria meningitidis
           OX99.30304]
 gi|325132901|gb|EGC55578.1| hypothetical protein NMBM6190_0281 [Neisseria meningitidis M6190]
 gi|325138886|gb|EGC61436.1| hypothetical protein NMBES14902_0330 [Neisseria meningitidis
           ES14902]
 gi|325143032|gb|EGC65384.1| hypothetical protein NMB9615945_0391 [Neisseria meningitidis
           961-5945]
 gi|325198964|gb|ADY94420.1| conserved hypothetical protein [Neisseria meningitidis G2136]
 gi|325202834|gb|ADY98288.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
 gi|325205423|gb|ADZ00876.1| conserved hypothetical protein [Neisseria meningitidis M04-240196]
 gi|325208827|gb|ADZ04279.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
          Length = 252

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 21/235 (8%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
                 ++         S     QA R     R     VL NR +    D  +  +   F
Sbjct: 32  DTLVAQIMQQADRHAEQSQKPDGQAIRNDAVRRLQTLEVLKNRALKEGLD-KDKDVQNRF 90

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +  + ++ A EY R           E+   +S   L+  YE+            ++Q+ F
Sbjct: 91  KIAEASFYAEEYVRF---------LERSETVSESALRQFYERQIRMI------KLQQVSF 135

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
             ++EA +A Q L KG  F  L +           G    + +P+   +   F+   +GD
Sbjct: 136 ATEEEARQAQQLLLKGLSFEGLMKRYPNDEQAFD-GFIMAQQLPEPLASQ--FAAMNRGD 192

Query: 338 FT-PVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            T   +     Y +  +S + K      F+ V+  +   +R  KA  K+    + 
Sbjct: 193 VTRDPVKLGERYYLFKLSEVGKNPDAQPFELVRNQLEQGLRQEKARLKIDAILEE 247


>gi|213022578|ref|ZP_03337025.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 335

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 17/239 (7%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
               YR    K +       +E  ++I +   E+ A  ++   +  +     +  ++   
Sbjct: 31  NYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIAL 90

Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326
                       Q++A+   +  + G  F +LA         +  G      I +   + 
Sbjct: 91  PENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIF 150

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384
               S AKKGD    I    G+ I  V++++  S ++S  EV    I  +       ++ 
Sbjct: 151 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQA 210

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +   + +   +  G +    +   K  S D    +  G           P     L ++
Sbjct: 211 RLKLEEIAADIKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 267


>gi|299142781|ref|ZP_07035910.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella oris
           C735]
 gi|298575810|gb|EFI47687.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella oris
           C735]
          Length = 464

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 65/215 (30%), Gaps = 37/215 (17%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
             ++ +    ++D I +    +          +  W        +  EY+  S       
Sbjct: 81  AVQKLFLHQAALDSIEVTESDIAQTV---EQQINYWINSAGSREKLEEYQGKSLSQIRSD 137

Query: 241 ----------------EKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPN--- 279
                           +    + ++  +++  ++        F P    VE LV      
Sbjct: 138 LHDDVKNSKMIQQMKRKIMSDVTVTPADVRRYFKNLPEDSIPFVPTEVEVEILVKKPRIP 197

Query: 280 QKEADEAFQSLK-------KGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLAD 327
           Q E +     L+       KG+  F  LA    E+ G +     +    +  + D + A 
Sbjct: 198 QSEINRVKDQLRSFTDRVTKGETSFSTLARLYSEDPGSARQGGEMDYAGRGTL-DPAFAS 256

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
             F+L      + ++   FGY I  + + +     
Sbjct: 257 VAFNLTDPKKISKIVESEFGYHIIQLVDKRGDKVK 291


>gi|187932060|ref|YP_001892045.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|187712969|gb|ACD31266.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 469

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/326 (10%), Positives = 93/326 (28%), Gaps = 74/326 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQ-KIGFVVNSERARSVGLDKKILDNLVSGAT 98
           + TV  V  + +           EL  +   +     N++  +   L ++ L +L+S + 
Sbjct: 52  NKTVAIVNSRPITSFELDQ----ELAKLEAMQPNSAFNTDPLK---LKRQALQDLISQSV 104

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L Q  E   +   + ++   I          N  S +     +   G++   Y       
Sbjct: 105 LLQLAERNNIMISNQQLDSAIQDIAA----KNGVSVESLKLNVEAAGMSFDSYKKRIRDQ 160

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L  + +                                   + +      S   + ++ +
Sbjct: 161 LMISQLQ---------------------------------QQAIAQQVYVSPEEIQKYIK 187

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           K++  +         Y L       K + ++  + +   +K  + +              
Sbjct: 188 KHQKEFDREMSPVKLYTL-------KNLIVALPDSKKARQKKIDLF-------------- 226

Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKK 335
                 +   ++  G   F ++ ++  ++ + +S G  S++   D    +        K 
Sbjct: 227 -----KKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKN 281

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFT 361
              +     +    + ++ NI     
Sbjct: 282 HQVSQPFIVNHTLQMIYIDNIDEKAP 307


>gi|167626495|ref|YP_001676995.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167596496|gb|ABZ86494.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 470

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/413 (12%), Positives = 129/413 (31%), Gaps = 71/413 (17%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           + TV  V  + +           E+           ++  + S+ + ++ L +L++ + L
Sbjct: 53  NKTVAIVNSKPITSFELDQ----EVAKFEAMNPN--SNFHSDSLQVRREALQDLIAQSVL 106

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E   +   + ++   I          N  S +     +   G++ + Y     + L
Sbjct: 107 LQLAERNNIIISNQQLDAAIKDIAA----KNGVSVESLKLNVEASGMSFESYKKRIREQL 162

Query: 160 SRT-DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN-----------NRHVPAIAD 207
             +          +  S   + +  + + E    +   +                 A   
Sbjct: 163 MVSQLQQQAISQQVYVSPEEIQKYIKKHQEQFDREMAPIKLYTLKNLIVALPDSKKARQK 222

Query: 208 PSN-----------------AVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKK 245
             +                  V+ Q+ +     Y     +  ++  I  +  D  +  K+
Sbjct: 223 KIDLFKKLAIAVNKGYIDFSEVVKQFSQAPNATYGGIVSQQVKFDSIPSMYRDYVKDLKE 282

Query: 246 IEISN-----DELQAEYEKNKEKYFSPEIRTVEQ-----LVFP-----NQKEA----DEA 286
            ++S        LQ  Y  N ++      + V +     +        +++ A    D A
Sbjct: 283 HQVSEPFIVNHTLQMIYIDNIDEKAPMLSKKVTKYYVYAIEIKLDGGMSEEGAKSSLDRA 342

Query: 287 FQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVI 342
             +++ G+ F ++A +  +     +      S+   P      +   L   K+G+ +   
Sbjct: 343 RLAIESGQDFTKVALKYNQDYDHANGKFRWVSRLDSPPAIPPAAFAKLETMKEGEVSEPF 402

Query: 343 H-GSFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEE 393
                 ++I   + +K       +E+K+  A   +   KA E  K     +++
Sbjct: 403 QADPKTWMIMKYTKVKEHDAA--EELKEQKALEAIFSEKAQEVYKTWLTSMKD 453


>gi|254242564|ref|ZP_04935886.1| hypothetical protein PA2G_03316 [Pseudomonas aeruginosa 2192]
 gi|126195942|gb|EAZ60005.1| hypothetical protein PA2G_03316 [Pseudomonas aeruginosa 2192]
          Length = 272

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 20/182 (10%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E   ++   PE  RI  +L    E+ +  E   D  +  Y  N  +   P    +  ++ 
Sbjct: 69  EARCEDGETPEEARIRQLL---EEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLL 125

Query: 278 P-----------NQKEADEAFQSLKKG-KKFIQLAEEQGKSLS---DISLGSFSKEYIPD 322
                        +K+A E    L+   ++F+ LA       S      LG         
Sbjct: 126 ACAPDDLEGRETARKQAAELLDELRGHPERFVDLARRFSACPSKEAGGDLGWIEPGQTV- 184

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +   A  G     +   +G  +  +   +    + F   +  IA  ++      
Sbjct: 185 PEFEKRLLRRA-PGLLEHPLESRYGLHVVELLGREGGEPLDFDAARAQIAAHLQAQVLQR 243

Query: 383 KV 384
            V
Sbjct: 244 AV 245


>gi|154494371|ref|ZP_02033691.1| hypothetical protein PARMER_03726 [Parabacteroides merdae ATCC
           43184]
 gi|154085815|gb|EDN84860.1| hypothetical protein PARMER_03726 [Parabacteroides merdae ATCC
           43184]
          Length = 454

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 23/174 (13%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK----IEISNDELQAEYEK--NKE 262
           S   L ++F K     +  E K +      V + +++    I+++  E++  Y +     
Sbjct: 107 SKEKLEEYFGKKISQLK-DERKEMIMEQQTVEQMKRQLIGEIKLTPSEVRKYYSQLSKDS 165

Query: 263 KYFSPEIRTVEQLVFPNQ---KEADEAFQSLKKGKK--------FIQLAEEQGKSLS--- 308
               P    V+ +    +   +E D     L++           F  LA    +      
Sbjct: 166 LPNIPTTVEVQIITMEPKIPFEETDAIKARLRQFTDDINSGKYEFSTLARLYSEDPESAK 225

Query: 309 -DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
               LG   K  +     A+  F+L      + ++   +GY I  +   +    
Sbjct: 226 RGGELGFLGKTSLL-PEFANVAFNLKDPKKISQIVQTEYGYHIIQLIEKRGDRI 278


>gi|15599066|ref|NP_252560.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas
           aeruginosa PAO1]
 gi|9950050|gb|AAG07258.1|AE004804_6 probable peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa PAO1]
          Length = 272

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 20/182 (10%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E   ++   PE  RI  +L    E+ +  E   D  +  Y  N  +   P    +  ++ 
Sbjct: 69  EARCEDGETPEEARIRQLL---EEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLL 125

Query: 278 P-----------NQKEADEAFQSLKKG-KKFIQLAEEQG---KSLSDISLGSFSKEYIPD 322
                        +K+A E    L+   ++F+ LA          S   LG         
Sbjct: 126 ACAPDDLEGRETARKQAAELLDELRGHPERFVDLARRFSACPSKESGGDLGWIEPGQTV- 184

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +   A  G     +   +G  +  +   +    + F   +  IA  ++      
Sbjct: 185 PEFEKRLLRRA-PGLLEHPLESRYGLHVVELLAREGGEPLDFDAARAQIAAHLQAQVLQR 243

Query: 383 KV 384
            V
Sbjct: 244 AV 245


>gi|83745590|ref|ZP_00942648.1| Hypothetical Protein RRSL_04650 [Ralstonia solanacearum UW551]
 gi|207738877|ref|YP_002257270.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum IPO1609]
 gi|83727667|gb|EAP74787.1| Hypothetical Protein RRSL_04650 [Ralstonia solanacearum UW551]
 gi|206592248|emb|CAQ59154.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum IPO1609]
          Length = 278

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 70/236 (29%), Gaps = 25/236 (10%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            +++  +          +N    Q  +   +      +           +   AV     
Sbjct: 40  QVTQAQLDRAIAQSGAQAN---PQIAQALKQQLIARELFRQQAAKNPAYEKLPAVKQAMQ 96

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E +                  + +  K   +++++++A Y+         E +    +  
Sbjct: 97  EAH----------DAVITQAWLKDNIKPAPVTDEQVKARYDAIVASLGDKEYK-ARVIQL 145

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLA 326
            +   A +  + LK+G  F +LA++   + + +  G              K     + LA
Sbjct: 146 GDDVTAAQVLELLKQGGDFAKLAQQYSTAPNKVRGGDMDWVSFKVPAEEGKTQNLPLPLA 205

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             I +L      T  +       I  V   +P+   ++  VK  I   +   +   
Sbjct: 206 REIAALGIGATSTAPVEVGSQRYIVKVEAARPTQVPAYDTVKPAIRQALESAELER 261


>gi|242077546|ref|XP_002448709.1| hypothetical protein SORBIDRAFT_06g031895 [Sorghum bicolor]
 gi|241939892|gb|EES13037.1| hypothetical protein SORBIDRAFT_06g031895 [Sorghum bicolor]
          Length = 209

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 13/118 (11%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-----KGKKFI 297
           E+K+  S+  ++ E  + K  +  PE   +       + +A +  ++L+       +KF 
Sbjct: 94  EEKVRASHILIKHEGSRRKASWRDPEGVAIS---ATTRDDAADLVRALRDQIVSGDRKFE 150

Query: 298 QLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            +A E      +     LGSF +  +   +   + F+L K G+ + V+    G  I  
Sbjct: 151 DIAAENSVCSSAKRGGDLGSFGRGKM-QKAFEKAAFAL-KVGEISDVVDTESGVHIIK 206


>gi|197104155|ref|YP_002129532.1| hypothetical protein PHZ_c0689 [Phenylobacterium zucineum HLK1]
 gi|196477575|gb|ACG77103.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 266

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 22/193 (11%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277
           + Y   E   +  +L       +    S  E +  YE  K K+ +P +     ++     
Sbjct: 59  NQYETDEESLVRQVL---EVAVEPQPPSETECRRVYEGMKGKFVTPTLFEASHILIEPAG 115

Query: 278 ---PNQKEADEAFQSL-----KKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLA 326
               +  EA+   ++L        + F + A  +          SLG   +  + D S+ 
Sbjct: 116 EAEADWSEAEAEARALIGVVGDSPQAFAEAAAARSSCPTAHQGGSLGQVRRGELVD-SVQ 174

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            +I +LA     T  +   FG+ +  +        + ++ V+  I + +   +A      
Sbjct: 175 AAIEALADGETGTAPVRSPFGWHVVRLERRIEGRVLPYEIVEGRIRDML---EARAWAIG 231

Query: 387 DYKRLEEFLALGT 399
             + + +  A   
Sbjct: 232 ASQFVADLAAKSA 244


>gi|329122338|ref|ZP_08250925.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC
           11116]
 gi|327473620|gb|EGF19039.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC
           11116]
          Length = 313

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/387 (11%), Positives = 107/387 (27%), Gaps = 118/387 (30%)

Query: 24  PFLIWGLSDALFSV---SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
            FL+  L    F+    +G   V +V    +  S            +   +G   +    
Sbjct: 10  SFLLAALGCVAFASMAQAGERVVATVDGIPILES-----------QVRANMGKKGD---- 54

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
                 +  +D ++    + + +++ G++ D   +   I          N  ++  F+  
Sbjct: 55  -----RQSAIDKIIDDILVQKAVQESGVKIDPREI-DHIVEDTA---ARNGLTYGQFLDA 105

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           L  +GI+   +     + ++   V+G                                 +
Sbjct: 106 LDYQGISLNTF----RQQIANQMVMGAVRN-----------------------------K 132

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
            +    D +   +    +K                                 L+   EK 
Sbjct: 133 AIQESIDVTREEVVALGQK--------------------------------MLEEAKEKG 160

Query: 261 KEKYFSPEIRTVEQLVFP-----NQKEADEAFQS-----LKKGKKFIQLAEEQGKSLSDI 310
             +    +   V  ++       N  +A +         +     F   A +  K     
Sbjct: 161 TAQKVMGKEYEVRHILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSG 220

Query: 311 SLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           + G       P+      A ++   +K+G  +      FG+ I  V+ ++          
Sbjct: 221 ANGGSLGYAFPETYAPQFAQTVVK-SKQGVISAPFKTEFGWHILEVTGVRDG-------- 271

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEF 394
             D+  +    KA E++     +L++ 
Sbjct: 272 --DLTAEAYTQKAYERLVN--TQLQDA 294


>gi|149199099|ref|ZP_01876139.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Lentisphaera araneosa HTCC2155]
 gi|149137888|gb|EDM26301.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Lentisphaera araneosa HTCC2155]
          Length = 92

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
              ++   +++A+E  + LK G  F + A +      +     LG      +   ++   
Sbjct: 6   ARHILVKQKRDAEEILEKLKSGADFAKFARKYSTCNSAKRGGDLGELRPGQLV-PAINQI 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHV 353
           +F   +       +   FG+ +  V
Sbjct: 65  VFK-KELNVIHGPVKSKFGFHLVEV 88


>gi|293603516|ref|ZP_06685937.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
 gi|292817952|gb|EFF77012.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
          Length = 160

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 47/147 (31%), Gaps = 16/147 (10%)

Query: 269 IRTVEQLVFPN-----QKEADEAFQSLKK-----GKKFIQLAEEQGKS---LSDISLGSF 315
                 ++         + A +  + +++     G KF  +A +  +         LG  
Sbjct: 7   QTRARHILIKTSTVMSDETARQRLEQVRQRLVSGGAKFEDMARQYSQDATAPQGGELGWL 66

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           +           ++ +L K G+ +P I   FG+ +  V   +          +      +
Sbjct: 67  NPGETV-PPFEAAMNAL-KPGEISPPIQSPFGWHLIQVEERRQHDATD-DLARMKARQIL 123

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMD 402
              +A    ++  ++L     +   ++
Sbjct: 124 FERRAQPAFEDWLEQLRAQAYVDNRLE 150


>gi|262369234|ref|ZP_06062562.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
 gi|262315302|gb|EEY96341.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
          Length = 94

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
           V  ++  ++  A++  + +  G  F ++A++      +     LG   K  +   ++   
Sbjct: 6   VRHILVKDKDLAEQLKKKIHDGADFAKIAKQYSTCNSAKRGGELGEVKKGQLV-PAIDKL 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +FS A+K      I   FG+ +  + 
Sbjct: 65  VFSAAEK-VLHGPIKSQFGFHLLEIK 89


>gi|319900080|ref|YP_004159808.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           helcogenes P 36-108]
 gi|319415111|gb|ADV42222.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           helcogenes P 36-108]
          Length = 518

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 29/202 (14%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQL------------VFPNQKEADEAFQSLKK-- 292
           E + + +   +    +         V  +            +   + + D  +Q L+K  
Sbjct: 105 EETEERIAHRFYNRLKFARQAGKVRVSHIFKYLSQNISGHALHEIEAKMDSIYQMLRKQG 164

Query: 293 -GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
               F     +     S+  +              D +F + + G+ +       G  I 
Sbjct: 165 KNADFDACVVDFSDEKSEFWVSWLQ----MPAEFEDIVFGM-QVGEISHPFFTPQGIHIV 219

Query: 352 HVSNIKPSFTVSFQEVKKDIAN----QMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
            V   +      F+EVK+ I +    +  + +  + + E  K+   ++     MDE+  +
Sbjct: 220 KVLERRE--LPPFEEVKEGIMHSRTYRYEMDEEMDALVEKLKKEYHYIPDQAGMDELISK 277

Query: 408 EKIVSIDLPLVDFAGKDVKGKE 429
            K   +   L  F GK   G+E
Sbjct: 278 GKTSRV---LFIFGGKTYTGRE 296


>gi|308388555|gb|ADO30875.1| hypothetical protein NMBB_0387 [Neisseria meningitidis alpha710]
 gi|325136921|gb|EGC59518.1| hypothetical protein NMBM0579_0319 [Neisseria meningitidis M0579]
          Length = 252

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 21/235 (8%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
                 ++         S     QA R     R     VL NR +    D  +  +   F
Sbjct: 32  DTLVAQIMQQADRHAEQSQKPDGQAIRNDAVRRLQTLEVLKNRALKEGLD-KDKDVQNRF 90

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +  + ++ A EY R           E+   +S   L+  YE+            ++Q+ F
Sbjct: 91  KIAEASFYAEEYVRF---------LERSETVSESALRQFYERQIRMI------KLQQVSF 135

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
             ++EA +A Q L KG  F  L +           G    + +P+   +   F+   +GD
Sbjct: 136 ATEEEARQAQQLLLKGLSFEGLMKRYPNDEQAFD-GFIMAQQLPEPLASQ--FAAMNRGD 192

Query: 338 FT-PVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            T   +     Y +  +S + K      F+ V+  +   +R  KA  K+    + 
Sbjct: 193 VTRDPVKLGERYYLFKLSEVGKNPDAQPFELVRNQLEQGLRQEKARLKIDAILEE 247


>gi|294616098|ref|ZP_06695908.1| foldase protein PrsA [Enterococcus faecium E1636]
 gi|291591031|gb|EFF22730.1| foldase protein PrsA [Enterococcus faecium E1636]
          Length = 295

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 73/212 (34%), Gaps = 31/212 (14%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK--------YK 221
           G +   +   +   +   +      IV          + S+  +T+ + +        YK
Sbjct: 38  GTLTVQDFYDNPKVKSNNQTLLKKMIVFKAFDDVYGKEISSKEVTKEYNEQIKKLGPNYK 97

Query: 222 DNYRAPEYKRISYILFDVHEKE------KKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +  +A      +Y                 +++++ +L   +++   +  +      + +
Sbjct: 98  EQLKAVGQTEETYKKLFKQMLAFQYGLKANVKLTDKDLDTAWKEFYPEVST------QII 151

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFS 331
           +F  ++EAD+A ++  +G+ F +L +  GK      +D  +   S        +  + F 
Sbjct: 152 LFSTKEEADKAKKAANEGENFSKLVQAYGKNKTLKETDGKMNFDSTNPEIPTEVKKAAFK 211

Query: 332 LAKKGDFT------PVIHGSFGYVIAHVSNIK 357
           L K G+ +              Y +  +   +
Sbjct: 212 L-KNGEVSDIIPVTDPTTYQQSYYLVKMVKKQ 242


>gi|218768878|ref|YP_002343390.1| hypothetical protein NMA2141 [Neisseria meningitidis Z2491]
 gi|121052886|emb|CAM09238.1| hypothetical protein NMA2141 [Neisseria meningitidis Z2491]
          Length = 239

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 21/235 (8%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
                 ++         S     QA R     R     VL NR +    D  +  +   F
Sbjct: 19  DTLVAQIMQQADRHAEQSQKPDGQAIRNDAVRRLQTLEVLKNRALKEGLD-KDKDVQNRF 77

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +  + ++ A EY R           E+   +S   L+  YE+            ++Q+ F
Sbjct: 78  KIAEASFYAEEYVRF---------LERSETVSESALRQFYERQIRMI------KLQQVSF 122

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
             ++EA +A Q L KG  F  L +           G    + +P+   +   F+   +GD
Sbjct: 123 ATEEEARQAQQLLLKGLSFEGLMKRYPNDEQAFD-GFIMAQQLPEPLASQ--FAAMNRGD 179

Query: 338 FT-PVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            T   +     Y +  +S + K      F+ V+  +   +R  KA  K+    + 
Sbjct: 180 VTRDPVKLGERYYLFKLSEVGKNPDAQPFELVRNQLEQGLRQEKARLKIDAILEE 234


>gi|218889849|ref|YP_002438713.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa LESB58]
 gi|218770072|emb|CAW25834.1| probable peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa LESB58]
          Length = 272

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 20/182 (10%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E   ++   PE  RI  +L    E+ +  E   D  +  Y  N  +   P    +  ++ 
Sbjct: 69  EARCEDGETPEEARIRQLL---EEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLL 125

Query: 278 P-----------NQKEADEAFQSLKKG-KKFIQLAEEQG---KSLSDISLGSFSKEYIPD 322
                        +K+A E    L+   ++F+ LA          S   LG         
Sbjct: 126 ACAPDDLEGRETARKQAAELLDELRGHPERFVDLARRFSACPSKESGGDLGWIEPGQTV- 184

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +   A  G     +   +G  +  +   +    + F   +  IA  ++      
Sbjct: 185 PEFEKRLLRRA-PGLLEHPLESRYGLHVVELLAREGGEPLDFDAARAQIAAHLQAQVLQR 243

Query: 383 KV 384
            V
Sbjct: 244 AV 245


>gi|25010882|ref|NP_735277.1| foldase protein PrsA [Streptococcus agalactiae NEM316]
 gi|77409622|ref|ZP_00786296.1| rotamase family protein [Streptococcus agalactiae COH1]
 gi|77413120|ref|ZP_00789320.1| rotamase family protein [Streptococcus agalactiae 515]
 gi|46396916|sp|Q8E602|PRSA_STRA3 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|23095261|emb|CAD46471.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160821|gb|EAO71932.1| rotamase family protein [Streptococcus agalactiae 515]
 gi|77171768|gb|EAO74963.1| rotamase family protein [Streptococcus agalactiae COH1]
          Length = 309

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 83/241 (34%), Gaps = 22/241 (9%)

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           T+VV M    +  S+           +   +  I+            S+  +++ + K  
Sbjct: 31  TNVVTMKGDTITVSDFYDQVKTSKAAQQSMLTLILSRVFDTQYGDKVSDKKVSEAYNKTA 90

Query: 222 DNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
             Y              PE  +       + E   K     +  +A Y++  + Y +PE 
Sbjct: 91  KGYGNSFSSALSQAGLTPEGYKQQIRTTMLVEYAVKEAAKKELTEANYKEAYKNY-TPET 149

Query: 270 RTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLS-DISLGSFSKEYIPDVSLAD 327
            +V+ +    + +A    + +K  G  F ++A+E+  +    +     S        +  
Sbjct: 150 -SVQVIKLDAEDKAKSVLKDVKADGADFAKIAKEKTTATDKKVEYKFDSAGTSLPKEVMS 208

Query: 328 SIFSLAKKG---DFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           + F L K G     + V   ++   Y I  V++     +  ++  K  +   +   K S+
Sbjct: 209 AAFKLDKNGVSDVVSTVDSTTYKTSYYIIKVTDKTEKKS-DWKSYKNRLKEVILKDKTSD 267

Query: 383 K 383
           +
Sbjct: 268 R 268


>gi|317475721|ref|ZP_07934980.1| ppic-type ppiase domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908104|gb|EFV29799.1| ppic-type ppiase domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 455

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 70/217 (32%), Gaps = 24/217 (11%)

Query: 240 HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEAF---------- 287
            +   +I+I+  E++  ++        + P    V+ +    +   +E            
Sbjct: 146 QKLVGEIKITPAEVRRYFKDLPQDSIPYIPTQVEVQIITQQPKVPLEEIENVKKRLRDFT 205

Query: 288 QSLKKGK-KFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
             + KG+  F  LA    +  +    G    FS   + D + A+  F+L      + ++ 
Sbjct: 206 DRITKGETSFSTLARMYSEDRASAIRGGEIEFSGRGMLDPAYANVAFNLQDPNKVSKIVE 265

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMD 402
             +G+ I  +   +     +    +  +        A          + + +  G  S +
Sbjct: 266 SEYGFHIIQLIEKRGDRIKT----RHILLKPHIPEAALTAGMSRLDSIADDIRNGKFSFE 321

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           E +    ++S D    +  G         +    ++L
Sbjct: 322 EAAS---VLSQDKDTRNNHGLLPNPNNNTSKFEMQEL 355


>gi|330958452|gb|EGH58712.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 91

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++    +EA++  Q + KG+ F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKTAEEAEQLKQRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVG-AIDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHV 353
            IF    +      +   FGY +  V
Sbjct: 63  IIFKKPLR-VVHGPVKSKFGYHLVQV 87


>gi|317504767|ref|ZP_07962726.1| peptidyl-prolyl cis-trans isomerase [Prevotella salivae DSM 15606]
 gi|315664098|gb|EFV03806.1| peptidyl-prolyl cis-trans isomerase [Prevotella salivae DSM 15606]
          Length = 480

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 68/212 (32%), Gaps = 31/212 (14%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP----------SNAVLTQWFEKYKDNYRAPEYK 230
             ++ +     +D I +    +    +           S   L ++  K     R+  + 
Sbjct: 97  AVQKLFLHQAILDSIEVTESDIAQTVEQQINLWINSVGSKEKLEEYQGKSISQIRSDLHD 156

Query: 231 RISYILFDVHEKEK---KIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPN---QKE 282
            +         K K    + ++  +++  ++        F P    VE LV      Q E
Sbjct: 157 DVKNSKMIQQMKRKIMGNVSVTPADVRRYFKNLPEDSIPFIPTEVEVEILVRKPRIPQSE 216

Query: 283 ADEAFQSLK-------KGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
            +     L+       KG+  F  LA    E+ G S     +    +  + D + A   F
Sbjct: 217 INRIKDQLRNFTDRVNKGETSFSTLARLYSEDPGTSRQGGEMDYTGRGTL-DPAFASVAF 275

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +L      + ++   FGY I  + + +     
Sbjct: 276 NLTDPKKISKIVESEFGYHIIQLIDKRGDKIK 307


>gi|268316633|ref|YP_003290352.1| hypothetical protein Rmar_1072 [Rhodothermus marinus DSM 4252]
 gi|262334167|gb|ACY47964.1| hypothetical protein Rmar_1072 [Rhodothermus marinus DSM 4252]
          Length = 590

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 59/157 (37%), Gaps = 12/157 (7%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           + + + L+A Y+ + E  F    R   +++  P ++  D     +++G  F + +  +  
Sbjct: 417 KPTEEALRAFYQAHAESLFYQLPRVYTEIIVRPTREAIDSIRAKIQRGVPFEKASHRRLL 476

Query: 306 SL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG-----YVIAHVSNI 356
                  +  + +++K   P     +  FSL K G+    I          Y +  V+  
Sbjct: 477 RAYERTREGKIITWNKRTEP-PYFGELAFSL-KVGEIAGPIEYQDVREGRRYALIRVTKR 534

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
                ++F+E +  +             +E+  RL E
Sbjct: 535 LEEKQLTFEEARDRVEKAFLEHHRERLAREEAARLRE 571



 Score = 41.1 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 33/169 (19%)

Query: 238 DVHEKEKKIEISNDELQAEYEKNK--EKYFSPEIRTVEQL-----------VFPNQKEAD 284
           D   +++   I  +EL   Y +++  ++Y + E    E             VFP   +A 
Sbjct: 97  DPAFRQRVARIVTEELVIAYARHRYEDRYLNEEAIRREHQNMGRVVYYRQFVFPKPADAS 156

Query: 285 EAF------------QSLKKGKKFIQLAEE------QGKSLSDISLGSFSKEYIPDVSLA 326
           EA             ++L  G  F Q+A+E       G+          +  Y      A
Sbjct: 157 EAELDSIRAVVERVREALASGTPFDQVAQEVIRGSIPGQITGYGVERYLTWNYAVVNPRA 216

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           + +F L+  G           + +A V+ I+       ++V++ I   +
Sbjct: 217 NILFRLS-PGAVRA-FEEPGRFTVAQVTRIEKRPVPPLEQVREQIIEAL 263



 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 42/125 (33%), Gaps = 3/125 (2%)

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
           +E    +   +  G   ++ S R  + + +       GK +   +    PY  +L F + 
Sbjct: 451 REAIDSIRAKIQRGVPFEKASHRRLLRAYE---RTREGKIITWNKRTEPPYFGELAFSLK 507

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
             +     ++        Y  +++ + +  +    EE    V+K +           +A 
Sbjct: 508 VGEIAGPIEYQDVREGRRYALIRVTKRLEEKQLTFEEARDRVEKAFLEHHRERLAREEAA 567

Query: 505 QLVLE 509
           +L   
Sbjct: 568 RLRER 572


>gi|257895172|ref|ZP_05674825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com12]
 gi|257831737|gb|EEV58158.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com12]
          Length = 303

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 73/199 (36%), Gaps = 21/199 (10%)

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK---RISYILFDVHEKEKKIEISNDEL 253
           ++ + + +  D +   L   F+    +    E K    I   L      +K I++++++L
Sbjct: 72  VSTKEIDSQYDQTKKQLGDSFDSQLKSAGYTEQKFKDSIKQSLAFQEGLKKHIKLTDEDL 131

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
           +  +E              + +   ++ +A +  ++  KG  F +LA+++    +    G
Sbjct: 132 KTAWESFHP------EVEAQIIQVASEDDAKDVKKAADKGDDFSKLAKDKSTDTTTKEDG 185

Query: 314 SFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFG------YVIAHVSNIKPSFTVS 363
              K           + ++ F L K G  + VI  +        Y +  +   +      
Sbjct: 186 GKVKFDSTTTTVPAEVKEAAFKL-KDGQVSDVITSTNASTYNTEYYVVKMVKNQNKGN-D 243

Query: 364 FQEVKKDIANQMRITKASE 382
             + KK++      TK S+
Sbjct: 244 MDKYKKELKEIATDTKLSD 262


>gi|296825238|ref|XP_002850783.1| peptidyl-prolyl cis-trans isomerase pin4 [Arthroderma otae CBS
           113480]
 gi|238838337|gb|EEQ27999.1| peptidyl-prolyl cis-trans isomerase pin4 [Arthroderma otae CBS
           113480]
          Length = 130

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF ++A E  +  +    SLG   +  + D +     
Sbjct: 41  VRHILCEKHSKKEEALEKLRSGAKFDEVAREFSEDKARQGGSLGWKVRGSL-DAAFEKVA 99

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           + L +               FGY I  V   K
Sbjct: 100 YDL-EPSTTGNPKYVEVKTGFGYHIIMVEGRK 130


>gi|209547141|ref|YP_002279059.1| hypothetical protein Rleg2_5108 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538385|gb|ACI58319.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 315

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 81/248 (32%), Gaps = 36/248 (14%)

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN---YRAP--- 227
              L     ++       V  + +        + P+   L    ++       +R     
Sbjct: 40  APELATADREKIALTKDDVRQLAVTWLA-QGRSAPTPDELRTLMDQKVTEEILFREAVSL 98

Query: 228 ---------EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
                    + +    + F   +  K  E +N +L+  Y K  +++      +   L F 
Sbjct: 99  GLDRDDEIIKRRLAQKMDFLAADLAKLEEPNNAQLEEWYAKRSDRFALSPHLSFRHLYFS 158

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSL---------------SDISLGSFSKEYIPDV 323
             K    A ++         +A +   S                 D +    +KE+ PD 
Sbjct: 159 FDKHGAAAREAAD--AALPSVAGKPADSPEVGSVADPFMFRNFYGDATPEQMAKEFGPD- 215

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             A ++F+L K G +   I   +G+ +  V +I+P    +F+E+   + +     + SE 
Sbjct: 216 -FAKALFTL-KPGSWQGPIQSGYGWHLIWVDSIEPGRVPAFEEIAPAVKSAWLDERYSEV 273

Query: 384 VKEDYKRL 391
                K +
Sbjct: 274 KSNALKEM 281


>gi|186683556|ref|YP_001866752.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
 gi|186466008|gb|ACC81809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
          Length = 251

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 24/185 (12%)

Query: 205 IADPSNAVLTQ----WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS----------- 249
               ++  L      + ++ K    +     +++    V +  + I IS           
Sbjct: 54  DIKVTDEELQAAGDTFRQENKLLGTSETLAWLAHQRISVEDWSEIIRISLLSQKLKEHLF 113

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLS 308
              +   Y  N++ Y       + Q++  +  EA +  ++L+  K  F  LA E  +   
Sbjct: 114 GVAVDDHYINNRDSYK---RVALSQILVRDLTEAMKITKALRDKKDSFCALALEYSQGKQ 170

Query: 309 DISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
               G+F         L +  +  +    G+    I    GY I  V    PS      E
Sbjct: 171 SKENGAFVGIRFLTELLPEITNAIADIDVGELVGPIQTQLGYHILRVEKWFPS---DLSE 227

Query: 367 VKKDI 371
           +++ I
Sbjct: 228 IREQI 232


>gi|319775614|ref|YP_004138102.1| survival protein SurA [Haemophilus influenzae F3047]
 gi|317450205|emb|CBY86421.1| survival protein SurA homolog [Haemophilus influenzae F3047]
          Length = 311

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/387 (11%), Positives = 107/387 (27%), Gaps = 118/387 (30%)

Query: 24  PFLIWGLSDALFSV---SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
            FL+  L    F+    +G   V +V    +  S            +   +G   +    
Sbjct: 8   SFLLAALGCVAFASMAQAGERVVATVDGIPILES-----------QVRANMGKKGD---- 52

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
                 +  +D ++    + + +++ G++ D   +   I          N  ++  F+  
Sbjct: 53  -----RQSAIDKIIDDILVQKAVQESGVKIDPREI-DHIVEDTA---ARNGLTYGQFLDA 103

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           L  +GI+   +     + ++   V+G                                 +
Sbjct: 104 LDYQGISLNTF----RQQIANQMVMGAVRN-----------------------------K 130

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
            +    D +   +    +K                                 L+   EK 
Sbjct: 131 AIQESIDVTREEVVALGQK--------------------------------MLEEAKEKG 158

Query: 261 KEKYFSPEIRTVEQLVFP-----NQKEADEAFQS-----LKKGKKFIQLAEEQGKSLSDI 310
             +    +   V  ++       N  +A +         +     F   A +  K     
Sbjct: 159 TAQKVMGKEYEVRHILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSG 218

Query: 311 SLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           + G       P+      A ++   +K+G  +      FG+ I  V+ ++          
Sbjct: 219 ANGGSLGYAFPETYAPQFAQTVVK-SKQGVISAPFKTEFGWHILEVTGVRDG-------- 269

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEF 394
             D+  +    KA E++     +L++ 
Sbjct: 270 --DLTAEAYTQKAYERLVN--TQLQDA 292


>gi|165975861|ref|YP_001651454.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|165875962|gb|ABY69010.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 316

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/382 (15%), Positives = 115/382 (30%), Gaps = 86/382 (22%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           AK  LV L       G+S    ++     V  V    V  S    +              
Sbjct: 6   AKSLLVALVTA---IGISQTAIAI-EERVVALVDGVPVMESQVQRAL------------- 48

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
               ++A S    K  L+ ++    + + +++ G++ ++ +V   I          N  +
Sbjct: 49  ---GKKANSEANHKAALEQIIDDLLVQKAVKEAGIKVNYAKVDQVIEDIAA----RNGIT 101

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           +   +  L  +GI  ++Y     + ++   V  + +G      +       +  E    D
Sbjct: 102 YGQLLDALDYQGITLEQYRQQIAQQMAMEQVRHISIGKSI--QVDPKDVHAYAKELLEKD 159

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
                 ++V  +                         R+S+IL         I+      
Sbjct: 160 KANGKLKNVTGV-----------------------QHRVSHILIKTTPVLNDIQ------ 190

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKS-LSDIS 311
                             + Q+V             +K GK  F + A+      LS   
Sbjct: 191 --------------AKAKLAQIV-----------ADIKAGKTTFEEAAKANSVDYLSAAD 225

Query: 312 LGSFSKEY--IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
            G     +  I D + A +  S AK+   T      FG+ I  V+  +     +     +
Sbjct: 226 GGDLGYNFLDIYDPAFAKAA-STAKQEQITAPFKSQFGWHILKVTGTQQG-DRTEDAYNQ 283

Query: 370 DIANQMRITKASEKVKEDYKRL 391
               Q+   +A E  K+  K L
Sbjct: 284 RAYEQLVDKQAQEAAKDWVKAL 305


>gi|159468868|ref|XP_001692596.1| peptidyl-prolyl cis-trans isomerase, parvulin-type [Chlamydomonas
           reinhardtii]
 gi|158278309|gb|EDP04074.1| peptidyl-prolyl cis-trans isomerase, parvulin-type [Chlamydomonas
           reinhardtii]
          Length = 248

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 271 TVEQLVFPNQKE--ADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSL 325
            V  ++ P  +E  A E  + L  G  F +LA E    G +     LG  S+        
Sbjct: 45  HVAHILLPLDQEPKAKELEEKLAGGAAFEELAREHSTCGSAKKGGELGWLSRGTFF-PQF 103

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             + F+ A  G  T    G  G  +  V   K
Sbjct: 104 EAAAFA-APVGGITRATTGR-GLHVIKVLAEK 133


>gi|149911665|ref|ZP_01900274.1| putative peptidyl-prolyl cis-trans isomerase C [Moritella sp. PE36]
 gi|149805246|gb|EDM65262.1| putative peptidyl-prolyl cis-trans isomerase C [Moritella sp. PE36]
          Length = 93

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSI 329
            ++  +Q +A E  + L+KG+ F +LA+             +LG F K  +   +     
Sbjct: 9   HILVKHQDKAYEILKKLEKGENFQKLAKSHSICPSGKKDGGNLGEFRKGAMV-PAFDKVC 67

Query: 330 FSLAKKGDFTPVI--HGSFGYVIAHV 353
           F+     +           G+ I  +
Sbjct: 68  FNA----EILTPHLVKTKHGWHIVKI 89


>gi|328675683|gb|AEB28358.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [Francisella cf. novicida 3523]
          Length = 469

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/484 (10%), Positives = 132/484 (27%), Gaps = 90/484 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           + TV  V  + +           E+  +        ++  A  + L ++ L +L+S + L
Sbjct: 52  NKTVAIVNSKPITSFELDQ----EVAKLEAMQPN--STFNADPLQLKRQALQDLISQSVL 105

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E   +   + ++   I          N  S +     +   G++   Y       L
Sbjct: 106 LQLAERNNITISNQQLDSAIQDIAA----KNGVSVESLKLNIEAAGMSFDSYKKRIRDQL 161

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             + +                                   + +      S   + ++ +K
Sbjct: 162 MISQLQ---------------------------------QQAIAQQVYVSPEEIQKYIKK 188

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           ++  +   E   +                                  P+ +   Q     
Sbjct: 189 HQKQFDR-EMAPVKLYTLKNLIIA----------------------LPDSKKARQKKIDL 225

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGD 337
            K+             F ++ ++  ++ + +S G  S++   D    +        K   
Sbjct: 226 FKKLALVVND--SNIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKKYIKELKNHQ 283

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK----DIANQMRITKASEKVKEDYKRLEE 393
            +     +    + ++ NI     +  ++V K     I  ++  +   E  K   +R + 
Sbjct: 284 VSQPFIVNHTLQMIYIDNIDEKAPILSKKVTKYYVYAIEIKLDGSMTEEGAKSSLERAKL 343

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
            +  G    +++ +              G      E+ + P      F    +       
Sbjct: 344 AIESGQQFTKVAMKYNQ-----DYDHPNGNFRWVSELDSPPSLPPAAFAQLKQLKENELS 398

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV-SSKANQLVLEYSK 512
                   ++M ++  ++             D  +  K  K  E + S KA ++   +  
Sbjct: 399 EPFQADGRTWMIIKYTKTKE----------YDAAEQLKEQKALEAIFSEKAQEIYKTWLT 448

Query: 513 EGKN 516
             K+
Sbjct: 449 SMKD 452


>gi|293385010|ref|ZP_06630844.1| foldase protein PrsA [Enterococcus faecalis R712]
 gi|293389280|ref|ZP_06633742.1| foldase protein PrsA [Enterococcus faecalis S613]
 gi|312905999|ref|ZP_07765012.1| putative foldase protein PrsA [Enterococcus faecalis DAPTO 512]
 gi|312909345|ref|ZP_07768201.1| putative foldase protein PrsA [Enterococcus faecalis DAPTO 516]
 gi|291077688|gb|EFE15052.1| foldase protein PrsA [Enterococcus faecalis R712]
 gi|291081444|gb|EFE18407.1| foldase protein PrsA [Enterococcus faecalis S613]
 gi|310627994|gb|EFQ11277.1| putative foldase protein PrsA [Enterococcus faecalis DAPTO 512]
 gi|311290369|gb|EFQ68925.1| putative foldase protein PrsA [Enterococcus faecalis DAPTO 516]
          Length = 362

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 84/262 (32%), Gaps = 30/262 (11%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIVLNNRHVPA 204
           I   ++ +   +  +        V          D+      + +       +  +    
Sbjct: 56  ITVDDFYNQIKEQSTSQQAFSQMVIYKVFEEKYGDKVTDKAIQKKFDDAKKQVEAQGGKF 115

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
               + A LT+  + +K   +  E  ++          +  ++I++++L+  +       
Sbjct: 116 SDALTQAGLTE--KSFKKQLKQAEAMQV--------GLKDHLKITDEDLKTAWASFHP-- 163

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYI 320
                   + +   ++ +A    + +  G  F ++A+++    +    G      S+   
Sbjct: 164 ----EVEAQIIQVASEDDAKAVKKEITDGGDFAKIAKDKSTDAATKKDGGKIKFDSQSTT 219

Query: 321 PDVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDIA 372
               + ++ F L K G+ +              Y +  ++  K        +++  K IA
Sbjct: 220 VPAEVKEAAFKL-KDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIA 278

Query: 373 NQMRITKASEKVKEDYKRLEEF 394
            + ++   + + K     L+  
Sbjct: 279 EETKLADQTFQAKVISDELKAA 300


>gi|313667752|ref|YP_004048036.1| hypothetical protein NLA_4070 [Neisseria lactamica ST-640]
 gi|313005214|emb|CBN86647.1| hypothetical protein NLA_4070 [Neisseria lactamica 020-06]
          Length = 252

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 85/230 (36%), Gaps = 21/230 (9%)

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            ++G        S     QA R     R     VL N  + A  D  +  +   F+  + 
Sbjct: 37  QLMGQPDLHTEQSQKPDGQAIRNDAVRRLQTLEVLKNGALQAGLD-KDKGVQNRFKIAEA 95

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
           ++ A EY R           E+   +S DEL+A YE+            ++Q+ F  + E
Sbjct: 96  SFYAQEYVRF---------LERSETVSEDELRAFYERQTRM------VKLQQVGFATEGE 140

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PV 341
           A +A Q L KG  F  L +           G    + +P+   +   F+   +GD T   
Sbjct: 141 ARQAQQLLLKGLSFEGLMKRYPNDEQAFD-GFIMAQQLPEPLASQ--FAGMNRGDVTRDP 197

Query: 342 IHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           I     Y +  +S + K      F+ V+  +   ++  KA  K+    + 
Sbjct: 198 IRLGGRYYLFKLSEVGKNPDAQPFELVRNQLEQGLKQEKARLKIDALLEE 247


>gi|237736222|ref|ZP_04566703.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium mortiferum ATCC
           9817]
 gi|229421775|gb|EEO36822.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium mortiferum ATCC
           9817]
          Length = 575

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/178 (9%), Positives = 61/178 (34%), Gaps = 10/178 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +   RK  + ++  I ++ +    ++  ++        +     +   K+       +  
Sbjct: 3   IRKFRKHIKPFIWFITILFIASSAMLAYMNMKSSYSRANVYAFKLDGDKISKIDVEKTKA 62

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
                 S+ +G  ++ +    +       D++++     +  E++ L+  +  V  +   
Sbjct: 63  NLTQGYSRYLGDKLDKDLIEVI-----AFDDIINRNLTLKIAEELNLKVPNSEVNAQYEA 117

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
                 +++  + + F   LA +G  +K + +     +           G+ P+   +
Sbjct: 118 I-----ENSVGNKEQFKRMLAVQGYTKKTFKNEIKNNMLIEKTFQKIQEGIVPTEEEI 170


>gi|303249762|ref|ZP_07335966.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307245230|ref|ZP_07527321.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307251950|ref|ZP_07533851.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307254177|ref|ZP_07536022.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258641|ref|ZP_07540376.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260875|ref|ZP_07542561.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|302651329|gb|EFL81481.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306853874|gb|EFM86088.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306860642|gb|EFM92654.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306862877|gb|EFM94826.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867298|gb|EFM99151.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869442|gb|EFN01233.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 316

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 88/269 (32%), Gaps = 23/269 (8%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMF-VGGMRPSNLLLDQAKRFYFENRSVDY-I 195
              L ++  +E  +     +++    V       G++ +   +DQ          + Y  
Sbjct: 45  QRALGKKANSEANHKAALEQIIDDLLVQKAVKEAGVKVNYAKVDQVIEDIAARNGITYGQ 104

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
           +L+      I       L Q+ ++        + + IS       + +     + + L+ 
Sbjct: 105 LLDALDYQGI------TLEQYRQQIAQQMAMEQVRHISIGKSIQVDPKDVHAYAKELLEK 158

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLKKGKK-FIQLAEEQGK 305
           +    K K  +     V  ++            + +  +    +K GK  F + A+    
Sbjct: 159 DKANGKLKNVTGVQHRVSHILIKTTPVLNDIQAKAKLAQIVADIKAGKTTFEEAAKANSV 218

Query: 306 S-LSDISLGSFSKEY--IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
             LS    G     +  I D + A +  S AK+   T      FG+ I  V+  +     
Sbjct: 219 DYLSAADGGDLGYNFLDIYDPAFAKAA-STAKQEQITAPFKSQFGWHILKVTGTQQG-DR 276

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     +    Q+   +A E  K+  K L
Sbjct: 277 TEDAYNQRAYEQLVDKQAQEAAKDWVKAL 305


>gi|293568878|ref|ZP_06680191.1| foldase protein PrsA [Enterococcus faecium E1071]
 gi|291588311|gb|EFF20146.1| foldase protein PrsA [Enterococcus faecium E1071]
          Length = 284

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 73/212 (34%), Gaps = 31/212 (14%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK--------YK 221
           G +   +   +   +   +      IV          + S+  +T+ + +        YK
Sbjct: 27  GTLTVQDFYDNPKVKSNNQTLLKKMIVFKAFDDVYGKEISSKEVTKEYNEQIKKLGPNYK 86

Query: 222 DNYRAPEYKRISYILFDVHEKE------KKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +  +A      +Y                 +++++ +L   +++   +  +      + +
Sbjct: 87  EQLKAVGQTEETYKKLFKQMLAFQYGLKANVKLTDKDLDTAWKEFYPEVST------QII 140

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFS 331
           +F  ++EAD+A ++  +G+ F +L +  GK      +D  +   S        +  + F 
Sbjct: 141 LFSTKEEADKAKKATNEGENFSKLVQAYGKNKTLKETDGKMNFDSTNPEIPTEVKKAAFK 200

Query: 332 LAKKGDFT------PVIHGSFGYVIAHVSNIK 357
           L K G+ +              Y +  +   +
Sbjct: 201 L-KNGEVSDIIPVTDPTTYQQSYYLVKMVKKQ 231


>gi|69244277|ref|ZP_00602745.1| rotamase family protein [Enterococcus faecium DO]
 gi|257878386|ref|ZP_05658039.1| rotamase [Enterococcus faecium 1,230,933]
 gi|257889415|ref|ZP_05669068.1| rotamase [Enterococcus faecium 1,231,410]
 gi|257892642|ref|ZP_05672295.1| rotamase [Enterococcus faecium 1,231,408]
 gi|258616093|ref|ZP_05713863.1| rotamase family protein [Enterococcus faecium DO]
 gi|260559968|ref|ZP_05832147.1| rotamase [Enterococcus faecium C68]
 gi|293560504|ref|ZP_06676994.1| foldase protein PrsA [Enterococcus faecium E1162]
 gi|294621867|ref|ZP_06701022.1| foldase protein PrsA [Enterococcus faecium U0317]
 gi|314940488|ref|ZP_07847631.1| putative foldase protein PrsA [Enterococcus faecium TX0133a04]
 gi|314943253|ref|ZP_07850036.1| putative foldase protein PrsA [Enterococcus faecium TX0133C]
 gi|314948470|ref|ZP_07851855.1| putative foldase protein PrsA [Enterococcus faecium TX0082]
 gi|314952963|ref|ZP_07855926.1| putative foldase protein PrsA [Enterococcus faecium TX0133A]
 gi|314994224|ref|ZP_07859529.1| putative foldase protein PrsA [Enterococcus faecium TX0133B]
 gi|314997146|ref|ZP_07862133.1| putative foldase protein PrsA [Enterococcus faecium TX0133a01]
 gi|68196463|gb|EAN10890.1| rotamase family protein [Enterococcus faecium DO]
 gi|257812614|gb|EEV41372.1| rotamase [Enterococcus faecium 1,230,933]
 gi|257825775|gb|EEV52401.1| rotamase [Enterococcus faecium 1,231,410]
 gi|257829021|gb|EEV55628.1| rotamase [Enterococcus faecium 1,231,408]
 gi|260074192|gb|EEW62515.1| rotamase [Enterococcus faecium C68]
 gi|291598526|gb|EFF29588.1| foldase protein PrsA [Enterococcus faecium U0317]
 gi|291605471|gb|EFF34915.1| foldase protein PrsA [Enterococcus faecium E1162]
 gi|313588765|gb|EFR67610.1| putative foldase protein PrsA [Enterococcus faecium TX0133a01]
 gi|313591405|gb|EFR70250.1| putative foldase protein PrsA [Enterococcus faecium TX0133B]
 gi|313594952|gb|EFR73797.1| putative foldase protein PrsA [Enterococcus faecium TX0133A]
 gi|313598031|gb|EFR76876.1| putative foldase protein PrsA [Enterococcus faecium TX0133C]
 gi|313640312|gb|EFS04893.1| putative foldase protein PrsA [Enterococcus faecium TX0133a04]
 gi|313645128|gb|EFS09708.1| putative foldase protein PrsA [Enterococcus faecium TX0082]
          Length = 295

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 72/212 (33%), Gaps = 31/212 (14%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK--------YK 221
           G +   +   +   +   +      IV          + S+  +T+ + +        YK
Sbjct: 38  GTLTVQDFYDNPKVKSNNQTLLKKMIVFKAFDDVYGKEISSKEVTKEYNEQIKKLGPNYK 97

Query: 222 DNYRAPEYKRISYILFDVHEKE------KKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +  +A      +Y                 +++++ +L   +++   +  +      + +
Sbjct: 98  EQLKAVGQTEETYKKLFKQMLAFQYGLKANVKLTDKDLDTAWKEFYPEVST------QII 151

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFS 331
           +F  ++EAD+A +   +G+ F +L +  GK      +D  +   S        +  + F 
Sbjct: 152 LFSTKEEADKAKKEANEGENFSKLVQAYGKNKTLKETDGKMNFDSTNPEIPTEVKKAAFK 211

Query: 332 LAKKGDFT------PVIHGSFGYVIAHVSNIK 357
           L K G+ +              Y +  +   +
Sbjct: 212 L-KNGEVSDIIPVTDPTTYQQSYYLVKMVKKQ 242


>gi|291278663|ref|YP_003495498.1| peptidyl-prolyl cis-trans isomerase SurA [Deferribacter
           desulfuricans SSM1]
 gi|290753365|dbj|BAI79742.1| peptidyl-prolyl cis-trans isomerase SurA [Deferribacter
           desulfuricans SSM1]
          Length = 304

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 84/248 (33%), Gaps = 17/248 (6%)

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN-----NRHVPAIADP 208
                 +R  ++  +   +   + L++Q        R    +  +        V    + 
Sbjct: 53  SIKDEATREKLLKKYYKEVL--DFLVNQYVLEIAAEREGIKVSESEVENALNEVLTKNNI 110

Query: 209 SNAVLTQWFEKYK---DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
           +   L +  E+       Y+      I            K+ ++ ++++   +++ ++  
Sbjct: 111 TIEQLEKVLEENNLTLAKYKYQLKNEILNARIRNALILPKLVVTEEDIKHYIDEHNKELK 170

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPD 322
             +   +  +   ++   DE  + LKKG  F   A +        S   +G     ++P+
Sbjct: 171 LDDQFELRIIKIKDKNRLDEIEKFLKKGGSFADAAIKYSVDKTAKSGGYIGWIKLNHLPE 230

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                      K+GD   +       ++  + N K  + +   ++K +I  +++     +
Sbjct: 231 KIREKV--KGYKEGDIVKIEDNGEITLLF-IENFKSKYDID-DKMKDEIVKKIKEKMYPD 286

Query: 383 KVKEDYKR 390
            VK   ++
Sbjct: 287 VVKNWLEK 294


>gi|260062279|ref|YP_003195359.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Robiginitalea biformata HTCC2501]
 gi|88783841|gb|EAR15012.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Robiginitalea biformata HTCC2501]
          Length = 481

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 96/293 (32%), Gaps = 46/293 (15%)

Query: 141 LAREGINEKEYID-HYTKMLSRTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
           L  +G  + E  D      L    +         +  S+  +      Y +         
Sbjct: 81  LKNQGATDAEIDDCSLLGKLMEDRLYAHQAVQDSILVSDDEVYAQSDRYLQQLEQRLG-- 138

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK----IEISNDEL 253
                      S   L Q++ K        E  +I+ +     + ++K    I+++ +E+
Sbjct: 139 -----------SMEKLLQFYNKESAEDLREELFQINKLQMLSQKMQQKVVGDIKVTPEEV 187

Query: 254 QAEY----EKNKEKYFSPEIRTVEQLVFPNQ---KEADEAFQSLKKGKKFIQ-------- 298
           +  +    E  K  + +     + Q+V   +    E  +    L   K  ++        
Sbjct: 188 RQFFRSIPEDEKPVFGA--ELEIAQIVIKPEVPEAEKQKVIDQLNAIKADVEDNDANFRV 245

Query: 299 ---LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
              L  E   S S+  + + +++        D  FSL ++G+ +      FG+ I  V  
Sbjct: 246 KAILYTEDEASRSNGGMYTMTRQTQFVKEFKDVAFSL-QEGEISEPFETQFGFHILMVEK 304

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRR 407
           I+        +V+  +        A E+ ++    + + +  G  +  E +R 
Sbjct: 305 IRGQEL----DVRHILIRPEVPQAALEEARKKLDTIRQHVIDGKYTFAEAARN 353


>gi|76800245|ref|ZP_00781993.1| Foldase protein prsA precursor [Streptococcus agalactiae 18RS21]
 gi|76584547|gb|EAO61412.1| Foldase protein prsA precursor [Streptococcus agalactiae 18RS21]
          Length = 257

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 73/218 (33%), Gaps = 21/218 (9%)

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           T+VV M    +  S+           +   +  I+            S+  +++ + K  
Sbjct: 31  TNVVTMKGDTITVSDFYDQVKTSKAAQQSMLTLILSRVFDTQYGDKVSDKKVSEAYNKTA 90

Query: 222 DNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
             Y              PE  +       + E   K     +  +A Y++  + Y +PE 
Sbjct: 91  KGYGNSFSSALSQAGLTPEGYKQQIRTTMLVEYAVKEAAKKELTEANYKEAYKNY-TPET 149

Query: 270 RTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLS-DISLGSFSKEYIPDVSLAD 327
            +V+ +    + +A    + +K  G  F ++A+E+  +    +     S        +  
Sbjct: 150 -SVQVIKLDAEDKAKSVLKDVKADGADFAKIAKEKTTATDKKVEYKFDSAGTTLPKEVMS 208

Query: 328 SIFSLAKKG---DFTPVIHGSF--GYVIAHVSNIKPSF 360
           + F L K G     + V   ++   Y I  V++     
Sbjct: 209 AAFKLDKNGVSDVVSTVDSTTYKTSYYIIKVTDKTEKK 246



 Score = 37.7 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 52/215 (24%), Gaps = 31/215 (14%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
            S  + VV++    +  S F +  K         +                     L+  
Sbjct: 27  TSNGTNVVTMKGDTITVSDFYDQVKTSKAAQQSML--------------------TLILS 66

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
              D      G +    +V          + K  K   + F S L++ G+  + Y     
Sbjct: 67  RVFD---TQYGDKVSDKKVSEA-------YNKTAKGYGNSFSSALSQAGLTPEGYKQQIR 116

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             +     V              +  K +  E  SV  I L+                  
Sbjct: 117 TTMLVEYAVKEAAKKELTEANYKEAYKNYTPET-SVQVIKLDAEDKAKSVLKDVKADGAD 175

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
           F K          K++ Y          K  +S  
Sbjct: 176 FAKIAKEKTTATDKKVEYKFDSAGTTLPKEVMSAA 210


>gi|32034721|ref|ZP_00134852.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207884|ref|YP_001053109.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus
           pleuropneumoniae L20]
 gi|126096676|gb|ABN73504.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 316

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/381 (14%), Positives = 109/381 (28%), Gaps = 84/381 (22%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           AK  LV L       G+S    ++     V  V    V  S    +              
Sbjct: 6   AKSLLVALVTA---IGISQTAIAI-EERVVALVDGVPVMESQVQRAL------------- 48

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
               ++A S    K  L+ ++    + + +++ G++ ++ +V   I          N  +
Sbjct: 49  ---GKKANSEANHKAALEQIIDDLLVQKAVKEAGVKVNYSKVDQVIEDIAA----RNGIT 101

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           +   +  L  +GI  ++Y     + ++   V  + +G      +       +  E    D
Sbjct: 102 YGQLLDALDYQGITLEQYRQQIAQQMAMEQVRHISIGKSI--QVDPKDVHAYAKELLEKD 159

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
                 ++V  +                         R+S+IL         I+      
Sbjct: 160 KANGKLKNVTGV-----------------------QHRVSHILIKTTPVLNDIQ------ 190

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-LSDISL 312
                                      K A            F + A+      LS    
Sbjct: 191 ------------------------AKAKLAQIVADIKAGKTTFEEAAKANSVDYLSAADG 226

Query: 313 GSFSKEY--IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
           G     +  I D + A +  S AK+   T      FG+ I  V+  +     +     + 
Sbjct: 227 GDLGYNFLDIYDPAFAKAA-STAKQEQITAPFKSQFGWHILKVTGTQQG-DRTEDAYNQR 284

Query: 371 IANQMRITKASEKVKEDYKRL 391
              Q+   +A E  K+  K L
Sbjct: 285 AYEQLVDKQAQEAAKDWVKAL 305


>gi|330950422|gb|EGH50682.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae Cit 7]
          Length = 91

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++    +EA++    + KG  F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKTAEEAEQLKLRIAKGGAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVG-AIDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHV 353
            IF    +      I   FGY +  V
Sbjct: 63  VIFKKPLR-VVHGPIKSKFGYHLVQV 87


>gi|301169179|emb|CBW28776.1| survival protein SurA homolog [Haemophilus influenzae 10810]
          Length = 311

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/387 (11%), Positives = 107/387 (27%), Gaps = 118/387 (30%)

Query: 24  PFLIWGLSDALFSV---SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
            FL+  L    F+    +G   V +V    +  S            +   +G   +    
Sbjct: 8   SFLLAALGCVAFASMAQAGERVVATVDGIPILES-----------QVRANMGKKGD---- 52

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
                 +  +D ++    + + +++ G++ D   +   I          N  ++  F+  
Sbjct: 53  -----RQSAIDKIIDDILVQKAVQESGVKIDPREI-DHIVEDTA---ARNGLTYGQFLDA 103

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           L  +GI+   +     + ++   V+G                                 +
Sbjct: 104 LDYQGISLNTF----RQQIANQMVMGAVRN-----------------------------K 130

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
            +    D +   +    +K                                 L+   EK 
Sbjct: 131 AIQESIDVTREEVVALGQK--------------------------------MLEEAKEKG 158

Query: 261 KEKYFSPEIRTVEQLVFP-----NQKEADEAFQS-----LKKGKKFIQLAEEQGKSLSDI 310
             +    +   V  ++       N  +A +         +     F   A +  K     
Sbjct: 159 TAQKVMGKEYEVRHILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSG 218

Query: 311 SLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           + G       P+      A ++   +K+G  +      FG+ I  V+ ++          
Sbjct: 219 ANGGSLGYAFPETYAPQFAQTVMK-SKQGVISAPFKTEFGWHILEVTGVRDG-------- 269

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEF 394
             D+  +    KA E++     +L++ 
Sbjct: 270 --DLTAEAYTQKAYERLVN--TQLQDA 292


>gi|309390238|gb|ADO78118.1| SurA domain protein [Halanaerobium praevalens DSM 2228]
          Length = 241

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 87/270 (32%), Gaps = 39/270 (14%)

Query: 9   SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK-----QE 63
            +  V+ + L VL VP  ++       S      V  V  +++       + K     ++
Sbjct: 2   KKFLVSFLLLTVLMVPMNVFAQDVDSDSKQEPKVVAVVNGEEITAQELAQNAKLNQILRQ 61

Query: 64  LGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           L  + Q++  ++ +  A +     L K  LD+L+    L Q ++D  +      +     
Sbjct: 62  LSQVDQQLVKLLTNSEAGNKVLADLRKAKLDSLIDNTLLKQAVKDSDINLSQEEIDEIYN 121

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           +      K NK     F+S L ++G    E    Y    +                    
Sbjct: 122 KQKSSILKQNKMDEKQFLSVLKKQGF---ENEAAYKNEFANNP----------------- 161

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                      +    L  + V    + S   + + +E+ KD +       +SY      
Sbjct: 162 ----------QIKINKLIEKEVVDNIEVSEKEIKEAYEQNKDAFAQTGQ-DVSYEQIKPR 210

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
            ++   +   ++   EY +        EI+
Sbjct: 211 LEQMLKQQKQNQAIKEYLEKLRDNAEVEIK 240


>gi|225180894|ref|ZP_03734342.1| SurA domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168375|gb|EEG77178.1| SurA domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 241

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 77/217 (35%), Gaps = 12/217 (5%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV----SGSSTVVSVGRQKVPFSSFI 57
           ++II K  + +   +   VL     + G S+          G+  + +V    + +  F 
Sbjct: 1   MDII-KTKKVFFTLLVFSVLISLVALGGCSEQATDGNEETDGNKAIATVNGVGITYDDF- 58

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           ++   E   ++Q  G  +      ++ L+ + ++ L++   L Q  E+  ++     +  
Sbjct: 59  SAQLLEFEQLAQMQGMSLEDPETVTI-LENQAVEVLINEQLLLQEAENKDIQISQSEIDE 117

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
           +I +       D +F        LA +G+  +E  D   + +    V    V  +  S  
Sbjct: 118 QIDQMKSGFEDDGQF-----EEALAAQGVEIEELADLIREDMLIQAVFAETVPNISVSED 172

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
            +   +     ++           +P + +    V+ 
Sbjct: 173 EITDEEINEVYDQQQQMAEAQGMDLPPLEELEAEVVA 209


>gi|83747578|ref|ZP_00944615.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
 gi|83725758|gb|EAP72899.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
          Length = 281

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 70/236 (29%), Gaps = 25/236 (10%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            +++  +          +N    Q  +   +      +           +   AV     
Sbjct: 43  QVTQAQLDRAIAQSGAQAN---PQIAQALKQQLIARELFRQQAAKNPAYEKLPAVKQAMQ 99

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E +                  + +  K   I++++++A Y+         E +    +  
Sbjct: 100 EAH----------DAVITQAWLKDNIKPAPITDEQVKARYDAIVASLGDKEYK-ARVIQL 148

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLA 326
            +   A +  + LK+G  F +LA++   + + +  G              K     + LA
Sbjct: 149 GDDVTAAQVLELLKQGGDFAKLAQQYSTAPNKVRGGDMDWVSFKVPAEEGKTQNLPLPLA 208

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             I +L      T  +       I  V   +P+   ++  VK  I   +   +   
Sbjct: 209 REIAALGIGATSTAPVEVGSQRYIVKVEAARPTQVPAYDTVKPAIRQALESAELER 264


>gi|300779152|ref|ZP_07089010.1| peptidyl-prolyl cis-trans isomerase [Chryseobacterium gleum ATCC
           35910]
 gi|300504662|gb|EFK35802.1| peptidyl-prolyl cis-trans isomerase [Chryseobacterium gleum ATCC
           35910]
          Length = 455

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 29/219 (13%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
                 +    +      + L++       E  +  Y  L ++       P    L   +
Sbjct: 69  EFLENLISNKLLVYEAKKDTLIENRSAAIKEQANAKYRQLLSQF------PDEKTLLAAY 122

Query: 218 EKYKDNYRAPEYKRIS-----YILFDVHEKEKKIEISNDELQAEYEKNKEKYFS--PEIR 270
            K+++ Y              Y          K +++ +E+   Y   K +      E+ 
Sbjct: 123 -KFRNAYEMKNAIEKIDTDQYYGQAKYQRVTDKADVTPNEVTDFYNMYKTQLPQVKDEVT 181

Query: 271 TVEQLVFPNQKEA---------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSK 317
             + +++P+  EA          +  Q +  G+ F   A    +     + G      +K
Sbjct: 182 LAQIMIYPSLTEAHKQDLINRLKKIKQDILAGETFESQARIYSEDEGSAANGGLYKNINK 241

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             +       +  +L +  + +  +   FG+ I  +   
Sbjct: 242 GQMVKP-FEAAALNLQEN-EISDPVESEFGFHIIQLVKR 278


>gi|228470588|ref|ZP_04055445.1| peptidyl-prolyl cis-trans isomerase family protein [Porphyromonas
           uenonis 60-3]
 gi|228307715|gb|EEK16691.1| peptidyl-prolyl cis-trans isomerase family protein [Porphyromonas
           uenonis 60-3]
          Length = 472

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/427 (12%), Positives = 135/427 (31%), Gaps = 70/427 (16%)

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI----NEKEYIDHYTKMLSRTDVV--G 166
             V   +   P+   +    +  ++   +  +G+    N   Y    T+ L+   +    
Sbjct: 44  DEVIWTVGDEPILKSE--IENQKLY---MRSQGMHLEGNPDCY---LTEQLAVQMLFLNQ 95

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
             +  +   N  +D+    + E+                   S   L ++F +   + R 
Sbjct: 96  AKIDSISVDNTKVDRFVDNFMESLVQQVG-------------SRERLEEYFNRPYSSIRE 142

Query: 227 PEYKRI---SYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQ- 280
            +         +     +  + + ++  E+++ Y +       + P+   V+ L    + 
Sbjct: 143 QQRTMAVNNEIVRQMQQKIIQGVTVTPSEIRSYYAQIPQDSLPYIPDAVEVQVLRITPEI 202

Query: 281 --KEADEAFQSLK-------KGK-KFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLA 326
                D+  + L+        G+  F  +A    +     +     G  ++  + +   A
Sbjct: 203 ELAAIDKIKEQLRGYSEDIRAGQRDFSTIARLYSQDSRTSVRGGEYGFVARSSL-EPEFA 261

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE--VKKDIANQMRITKASEKV 384
             +F+L+     +P+I  + GY I  +   +   T++F+   +K  IA   ++ +A  K 
Sbjct: 262 QVVFALSDTKQVSPIIRTATGYHIVQLIEKR-DNTINFRHILLKPSIAPD-KLQQAVSKA 319

Query: 385 KEDY-------KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
                         ++ + L ++++E      ++  +    D  G  +         Y  
Sbjct: 320 DSVAVVVRNGKTTFDDAVVLCSNVEETKNNYGLLLNENQESDRYGTALFTMSELQQDYAS 379

Query: 438 QL-------LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
           Q+       +   F   D       V L        +I           + +     +D 
Sbjct: 380 QVDKMQVGDVSPAFVSQDANGNTQVVLLKLKQ----RISGHRADMATDFQLIKQLALQDK 435

Query: 491 KTVKTAE 497
           K  +  +
Sbjct: 436 KQKEIDK 442


>gi|325521604|gb|EGD00389.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           TJI49]
          Length = 207

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 2/103 (1%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  KK + ++ E++A Y+   +         +  ++  N+++A +    +K G KF  L
Sbjct: 103 EDFLKKNQPTDAEVKARYDDLVKGVGGNREYHLHHILVDNEQQAKDLIAKIKAGAKFEDL 162

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP 340
           A++  K       G       P   + +  +     +KG  T 
Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTD 205


>gi|307249622|ref|ZP_07531608.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858320|gb|EFM90390.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 316

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 88/269 (32%), Gaps = 23/269 (8%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMF-VGGMRPSNLLLDQAKRFYFENRSVDY-I 195
              L ++  +E  +     +++    V       G++ +   +DQ          + Y  
Sbjct: 45  QRALGKKANSEANHKAALEQIIDDLLVQKAVKEAGVKVNYAKVDQVIEDIAARNGITYGQ 104

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
           +L+      I       L Q+ ++        + + IS       + +     + + L+ 
Sbjct: 105 LLDALDYQGI------TLEQYRQQIAQQMAMEQVRHISIGKSIQVDPKDVHAYAKELLEK 158

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLKKGKK-FIQLAEEQGK 305
           +    K K  +     V  ++            + +  +    +K GK  F + A+    
Sbjct: 159 DKANGKLKNVTGVQHRVSHILIKTTPVLNDIQAKAKLAQIVADIKAGKTTFEEAAKANSV 218

Query: 306 S-LSDISLGSFSKEY--IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
             LS    G     +  I D + A +  S AK+   T      FG+ I  V+  +     
Sbjct: 219 DYLSAADGGDLGYNFLDIYDPAFAKAA-STAKQEQITAPFKSQFGWHILKVTGTQQG-DR 276

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     +    Q+   +A E  K+  K L
Sbjct: 277 TEDAYNQRAYEQLVDKQAQEAAKDWVKAL 305


>gi|261208875|ref|ZP_05923312.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           TC 6]
 gi|289566923|ref|ZP_06447329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           D344SRF]
 gi|294616439|ref|ZP_06696226.1| foldase protein PrsA [Enterococcus faecium E1636]
 gi|260077377|gb|EEW65097.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           TC 6]
 gi|289161290|gb|EFD09184.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           D344SRF]
 gi|291590690|gb|EFF22412.1| foldase protein PrsA [Enterococcus faecium E1636]
          Length = 303

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 72/199 (36%), Gaps = 21/199 (10%)

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY---KRISYILFDVHEKEKKIEISNDEL 253
           ++ + + +  D +   L   F+    +    E      I   L      +K I++++++L
Sbjct: 72  VSTKEIDSQYDQTKKQLGDSFDSQLKSAGYTEQTFKDSIKQSLAFQEGLKKHIKLTDEDL 131

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
           +  +E              + +   ++ +A +  ++  KG  F +LA+++    +    G
Sbjct: 132 KTAWESFHP------EVEAQIIQVASEDDAKDVKKAADKGDDFSKLAKDKSTDTTTKEDG 185

Query: 314 SFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFG------YVIAHVSNIKPSFTVS 363
              K           + ++ F L K G  + VI  +        Y +  +   +      
Sbjct: 186 GKVKFDSTTTTVPAEVKEAAFKL-KDGQVSDVITSTNASTYTTEYYVVKMVKKQNKGN-D 243

Query: 364 FQEVKKDIANQMRITKASE 382
             + KK++      TK S+
Sbjct: 244 MDKYKKELKEIATDTKLSD 262


>gi|299069905|emb|CBJ41188.1| putative isomerase [Ralstonia solanacearum CMR15]
          Length = 270

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 68/236 (28%), Gaps = 27/236 (11%)

Query: 159 LSRTDVVGMF-VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
           +++  +       G + +  +    K+              N     +     A      
Sbjct: 32  ITQEQLDHAIAQSGAQANPQVAQALKQQLIARELFRQQAAKNPAYDKLPAVKQA------ 85

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
                     E          + +  K   I+ ++++A Y+         E +    +  
Sbjct: 86  --------MQEAHDAVITQAWLKDNIKPAPITEEQVKARYDAIVASLGDKEYK-ARVIQL 136

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLA 326
            +   A +    LK+G  F +LA++   + + +  G              K     + LA
Sbjct: 137 GDDVTAAQVLAQLKQGGDFAKLAQQYSTAPNKVRGGDMDWVSFKVPVEEGKTQNLPLPLA 196

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             I +LA     T  +       I  V   +P+    ++ V+  I   +   +   
Sbjct: 197 REIATLAVGAASTAPVEAGSQRYIVKVEAARPTQVPGYETVRPAIRQALETAELER 252


>gi|156541340|ref|XP_001599709.1| PREDICTED: similar to ENSANGP00000014025 [Nasonia vitripennis]
          Length = 162

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 46/169 (27%), Gaps = 36/169 (21%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           S+  L   +EK         Y    Y      ++  K                 K   P+
Sbjct: 2   SDEELPSGWEKRLSRSTGQHYYLNVYTKESQWDRPDKPADP---------AGNGKTEGPD 52

Query: 269 IRTVEQLVFP-----------------NQKEADEAFQSLKK-----GKKFIQLAEEQG-- 304
                 ++                   ++ EA E  +  ++        F  LA +    
Sbjct: 53  EVQCSHILVKHSGSRRPSSWRESTITRSKAEALELVKEYREQIVSGEASFGSLASKYSDC 112

Query: 305 -KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +  +  LG F +  +      ++ F+L K G  +  I    G  I  
Sbjct: 113 SSAKRNGDLGPFGRGAMQKP-FEEAAFAL-KVGQISQPIDTDSGVHIIQ 159


>gi|309378642|emb|CBX22713.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 251

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 83/230 (36%), Gaps = 21/230 (9%)

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            ++G        S     QA R     R     VL N  + A  D  +  +   F+  + 
Sbjct: 36  QLMGQPDLHTEQSQKPDGQAIRNDAVRRLQTLEVLKNGALQAGLD-KDKGVQNRFKIAEA 94

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
           ++ A EY R           E+   +S  EL+  YE+            ++Q+ F  + E
Sbjct: 95  SFYAQEYVRF---------LERSETVSESELRQFYERQIRMI------KLQQVGFATEDE 139

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PV 341
           A +A Q L KG  F  L +           G    + +P+   +   F+   +GD T   
Sbjct: 140 ARQAQQLLLKGLSFEGLMKRYPNDEQAFD-GFIMAQQLPEPLASQ--FAGMNRGDVTRDP 196

Query: 342 IHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           I     Y +  +S + K      F+ V+  +   ++  KA  K+    + 
Sbjct: 197 IRLGGRYYLFKLSEVGKNPDAQPFELVRNQLEQGLKQEKARLKIDALLEE 246


>gi|208778951|ref|ZP_03246297.1| peptidyl-prolyl cis-trans isomerase [Francisella novicida FTG]
 gi|208744751|gb|EDZ91049.1| peptidyl-prolyl cis-trans isomerase [Francisella novicida FTG]
          Length = 457

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/326 (10%), Positives = 93/326 (28%), Gaps = 74/326 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQ-KIGFVVNSERARSVGLDKKILDNLVSGAT 98
           + TV  V  + +           EL  +   +     N++  +   L ++ L +L+S + 
Sbjct: 40  NKTVAIVNSRPITSFELDQ----ELAKLEAMQPNSAFNTDPLK---LKRQALQDLISQSV 92

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L Q  E   +   + ++   I          N  S +     +   G++   Y       
Sbjct: 93  LLQLAERNNIMISNQQLDSAIQDIAA----KNGVSVESLKLNVEAAGMSFDSYKKRIRDQ 148

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L  + +                                   + +      S   + ++ +
Sbjct: 149 LMISQLQ---------------------------------QQAIAQQVYVSPEEIQKYIK 175

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           K++  +         Y L       K + ++  + +   +K  + +              
Sbjct: 176 KHQKEFDREMSPVKLYTL-------KNLIVALPDSKKARQKKIDLF-------------- 214

Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKK 335
                 +   ++  G   F ++ ++  ++ + +S G  S++   D    +        K 
Sbjct: 215 -----KKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKN 269

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFT 361
              +     +    + ++ NI     
Sbjct: 270 HQVSQPFIVNHTLQMIYIDNIDEKAP 295


>gi|190149693|ref|YP_001968218.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303252643|ref|ZP_07338806.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307247402|ref|ZP_07529449.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307256445|ref|ZP_07538227.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307263001|ref|ZP_07544623.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914824|gb|ACE61076.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648611|gb|EFL78804.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|306856099|gb|EFM88255.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306865075|gb|EFM96976.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306871627|gb|EFN03349.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 316

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 88/269 (32%), Gaps = 23/269 (8%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMF-VGGMRPSNLLLDQAKRFYFENRSVDY-I 195
              L ++  +E  +     +++    V       G++ +   +DQ          + Y  
Sbjct: 45  QRALGKKANSEANHKAALEQIIDDLLVQKAVKEAGVKVNYAKVDQVIEDIAARNGITYGQ 104

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
           +L+      I       L Q+ ++        + + IS       + +     + + L+ 
Sbjct: 105 LLDALDYQGI------TLEQYRQQIAQQMAMEQVRHISIGKSIQVDPKDVHAYAKELLEK 158

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLKKGKK-FIQLAEEQGK 305
           +    K K  +     V  ++            + +  +    +K GK  F + A+    
Sbjct: 159 DKANGKLKNVTGVQHRVSHILIKTTPVLNDIQAKAKLAQIVADIKAGKTTFEEAAKANSV 218

Query: 306 S-LSDISLGSFSKEY--IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
             LS    G     +  I D + A +  S AK+   T      FG+ I  V+  +     
Sbjct: 219 DYLSAADGGDLGYNFLDIYDPAFAKAA-STAKQEQITAPFKSQFGWHILKVTGTQQG-DR 276

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     +    Q+   +A E  K+  K L
Sbjct: 277 TEDAYNQRAYEQLVDKQAQEAAKDWVKAL 305


>gi|146307053|ref|YP_001187518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
 gi|145575254|gb|ABP84786.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
          Length = 92

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
              ++   + EA    + +  G+ F  LA +            LG      +   ++   
Sbjct: 6   ARHILVKTEAEAAALKKRIAAGEAFDMLARKHSICPSGKKGGDLGEVRPGQMV-RAVDQV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHV 353
           IF    + +    +   FGY +  V
Sbjct: 65  IFKKPLR-EVHGPVKTQFGYHLIQV 88


>gi|66046138|ref|YP_235979.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
 gi|63256845|gb|AAY37941.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
 gi|330970013|gb|EGH70079.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 91

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++    +EA++    + KG+ F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKTAEEAEQLKLRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVG-AIDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHV 353
            IF    +      I   FGY +  V
Sbjct: 63  VIFKKPLR-IVHGPIKSKFGYHLVQV 87


>gi|83646714|ref|YP_435149.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
 gi|83634757|gb|ABC30724.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
          Length = 255

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 79/242 (32%), Gaps = 38/242 (15%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV---DYIVLNNRHVPAIADPSNAVLTQW 216
           S+ D +      +  S LL  +A+    E   +   + I L  +    + +P+     ++
Sbjct: 28  SQEDALNQAARALIVSELLRQRAQALEMETEGLSQDEVIDLLLQREAPVREPTAEECERF 87

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +  + + + +      ++IL          ++    L+                      
Sbjct: 88  YRGHPEQFSSSPLVEANHILL----AAAPDDVKERSLKL--------------------- 122

Query: 277 FPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSL 332
               ++A    + L+   ++F  LA++     S     SLG  S+          ++F  
Sbjct: 123 ----EQAKALIERLQSNPEQFASLAQKFSACPSKDQGGSLGQLSRGQTV-AEFEAAVFR- 176

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            + G     +   +G  +  V    P     +  V++ + + ++       + +   RL 
Sbjct: 177 HEYGLIPSPVESRYGVHVVWVKRNIPGELAPYSYVEEKLRSYLKELAERRAIVDYLHRLV 236

Query: 393 EF 394
           E 
Sbjct: 237 EA 238


>gi|229044062|ref|ZP_04191750.1| Foldase protein prsA 1 [Bacillus cereus AH676]
 gi|228725273|gb|EEL76542.1| Foldase protein prsA 1 [Bacillus cereus AH676]
          Length = 94

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              ++ + L   G  +  +  ++GY I  V++ K      F EVK  I   +   +  + 
Sbjct: 3   EFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKKE--LKPFDEVKDKIRKDIEQQRLQDT 59

Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIV 411
             +  +++   L     +   ++  K  
Sbjct: 60  TGKWKQQVVNDLLKDADIKVNNKEFKDT 87


>gi|254236772|ref|ZP_04930095.1| hypothetical protein PACG_02782 [Pseudomonas aeruginosa C3719]
 gi|126168703|gb|EAZ54214.1| hypothetical protein PACG_02782 [Pseudomonas aeruginosa C3719]
          Length = 272

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 20/182 (10%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E   ++   PE  RI  +L    E+ +  E   D  +  Y  N  +   P    +  ++ 
Sbjct: 69  EARCEDGETPEEARIRQLL---EEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLL 125

Query: 278 P-----------NQKEADEAFQSLKKG-KKFIQLAEEQGKSLS---DISLGSFSKEYIPD 322
                        +K+A E    L+   ++F+ LA       S      LG         
Sbjct: 126 ACAPDDLEGRETARKQAAELLDELRGHPERFVDLARRFSACPSKEAGGDLGWIEPGQTV- 184

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +   A  G     +   +G  +  +   +    + F   +  IA  ++      
Sbjct: 185 PEFEKRLLRRA-PGLLEHPLESRYGLHVVELLAREGGEPLDFDAARAQIAAHLQAQVLQR 243

Query: 383 KV 384
            V
Sbjct: 244 AV 245


>gi|107103386|ref|ZP_01367304.1| hypothetical protein PaerPA_01004456 [Pseudomonas aeruginosa PACS2]
 gi|296387613|ref|ZP_06877088.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa PAb1]
 gi|313109291|ref|ZP_07795259.1| putative peptidyl-prolyl cis-trans isomerase [Pseudomonas
           aeruginosa 39016]
 gi|310881761|gb|EFQ40355.1| putative peptidyl-prolyl cis-trans isomerase [Pseudomonas
           aeruginosa 39016]
          Length = 272

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 20/182 (10%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E   ++   PE  RI  +L    E+ +  E   D  +  Y  N  +   P    +  ++ 
Sbjct: 69  EARCEDGETPEEARIRQLL---EEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLL 125

Query: 278 P-----------NQKEADEAFQSLKKG-KKFIQLAEEQGKSLS---DISLGSFSKEYIPD 322
                        +K+A E    L+   ++F+ LA       S      LG         
Sbjct: 126 ACAPDDLEGRETARKQAAELLDELRGHPERFVDLARRFSACPSKEAGGDLGWIEPGQTV- 184

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +   A  G     +   +G  +  +   +    + F   +  IA  ++      
Sbjct: 185 PEFEKRLLRRA-PGLLEHPLESRYGLHVVELLAREGGEPLDFDAARAQIAAHLQAQVLQR 243

Query: 383 KV 384
            V
Sbjct: 244 AV 245


>gi|121635518|ref|YP_975763.1| hypothetical protein NMC1824 [Neisseria meningitidis FAM18]
 gi|120867224|emb|CAM10993.1| hypothetical protein NMC1824 [Neisseria meningitidis FAM18]
          Length = 239

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 21/235 (8%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
                 ++         S     QA R     R     VL NR +    D  +  +   F
Sbjct: 19  DTLVAQIMQQADRHAEQSQKPDGQAIRNDAVRRLQTLEVLKNRALKEGLD-KDKDVQNRF 77

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +  + ++ A EY R           E+   +S   L+  YE+            ++Q+ F
Sbjct: 78  KIAEASFYAEEYVRF---------LERSETVSESALRQFYERQIRMI------KLQQVSF 122

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
             ++EA +A Q L KG  F  L +           G    + +P+   +   F+   +GD
Sbjct: 123 ATEEEARQAQQLLLKGLSFEGLMKRYPNDEQAFD-GFIMAQQLPEPLASQ--FAAMNRGD 179

Query: 338 FT-PVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            T   +     Y +  +S + K      F+ V+  +   +R  KA  K+    + 
Sbjct: 180 VTRNPVKLGERYYLFKLSEVGKNPDAQPFELVRNQLEQGLRQEKARLKIDALLEE 234


>gi|242247195|ref|NP_001156231.1| dodo-like [Acyrthosiphon pisum]
 gi|239793486|dbj|BAH72856.1| ACYPI007002 [Acyrthosiphon pisum]
          Length = 163

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 27/119 (22%)

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQK-----------------EADEA----FQSLKKGK-K 295
           E        PE      L+  ++K                 EA +      + +  GK  
Sbjct: 43  ENTGSTNSGPEQVQCSHLLVKHEKSRRPSSWREERITRSKSEAIDIIKSYREQIVSGKAS 102

Query: 296 FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F +LA++      +     LG F++  +      D+ F+L K G+ +  IH   G  I 
Sbjct: 103 FAELAQKYSDCSSAKRGGDLGPFTRGTMQKP-FEDASFAL-KIGELSEPIHTDSGVHII 159


>gi|327480810|gb|AEA84120.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas stutzeri DSM
           4166]
          Length = 98

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++   + EA +  + L  G+ F  LA +     S      LG      +   S+   
Sbjct: 12  ARHILVKTEAEAAQLKKRLANGEAFDVLARKYSTCPSGKKGGDLGEVRLGQMV-RSIDQV 70

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHV 353
           IF    + +    +   FGY +  V
Sbjct: 71  IFKKPLR-EVHGPVKSQFGYHLVQV 94


>gi|296328723|ref|ZP_06871238.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154160|gb|EFG94963.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 227

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 64/170 (37%), Gaps = 3/170 (1%)

Query: 228 EYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           E   I Y L  +  +  +   I  + L+  YE+N+  Y  P+   ++ +   + ++A+E 
Sbjct: 33  ESLFIRYFLEREAAKIVENTNIEENVLKKIYEENQNLYKFPKKVKIDTIFVKDLEKAEEI 92

Query: 287 FQS--LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            +   LK      +  +E+G+    ++        I    + + +    K       I  
Sbjct: 93  LKEINLKNFSSLKEKNDEKGQEAKAVTDDFLFVTEIHPALVEEILKEEKKNVILKKAIPV 152

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
             G+ I ++ +I+      F E ++ I   ++     +   +  + +   
Sbjct: 153 QEGFHIVYLKDIEDERQAIFDEARETILADVKRNIFGQVYNQLIEDIANE 202


>gi|294626443|ref|ZP_06705043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292599242|gb|EFF43379.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 294

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 61/167 (36%), Gaps = 27/167 (16%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-----------------KEADEA 286
           +  +I   +++A+++ +   Y   +   +  L    +                   A   
Sbjct: 120 ESAQIDAAQIKAQFDAHPHDY---DEVHLSHLFVALKPQGAARRGTPLTDAQALARAQRL 176

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK---GDFTPVIH 343
            Q L+ G  F +LA  Q    S  + G      +   ++AD+  +  +    G  +  + 
Sbjct: 177 KQQLESGTPFAELAMRQSDDASTAAEGG-ELSPMFLRNVADAFVAPVQDLAVGQVSAPVR 235

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+ GY +  V   +P+   +    +  I  Q+R   A+  +++  + 
Sbjct: 236 GAEGYHLIRVDARRPA---TLDSARGQIEVQLRDQAAANALEQLRQA 279


>gi|332638849|ref|ZP_08417712.1| peptidylprolyl isomerase [Weissella cibaria KACC 11862]
          Length = 336

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 76/230 (33%), Gaps = 21/230 (9%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
           G +  ++           + +  + I+            S+  +T+ ++  K  Y +   
Sbjct: 34  GSISQADYYKKLKSTTEGQQQLANMIIQKVLDKKYGDKVSSKAITKQYDDVKAQYGSQFS 93

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT----------VEQLVFPN 279
             ++         ++ +E+   E +A  E N  K+ + +++           V  ++  +
Sbjct: 94  TALANNGMTEDSFKESLELQALE-KAAVEAN-SKFTTKQLKEQYKNYTPNVNVSVILVSS 151

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAK 334
           + EA +    L  G KF  LA++     S    G       S     +     + F L K
Sbjct: 152 EDEAKDMISKLDDGDKFATLAKKYSTDSSTKDKGGKMDAFDSTNTTLEDDFKTAAFKLKK 211

Query: 335 KGDFTPVIHGS--FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                  +      GY +  + +       SF  +K  +   +   + S+
Sbjct: 212 GEYTKTPVKSDTYSGYFVIKMDSR--DDKKSFTTLKSKMKEILVTNEMSD 259


>gi|153872855|ref|ZP_02001626.1| hypothetical protein BGP_3987 [Beggiatoa sp. PS]
 gi|152070678|gb|EDN68373.1| hypothetical protein BGP_3987 [Beggiatoa sp. PS]
          Length = 91

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 1  MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
          ML+ IR  ++ W+A + ++++ +PF  WG+++  FS +    +  V   ++P   F    
Sbjct: 1  MLQNIRDGAKGWIAWVIVIIICIPFAFWGINEY-FSPAPKIVIAEVNGVELPERDFQQEM 59

Query: 61 KQELGMISQKIGFVVN 76
           +    I   +  V  
Sbjct: 60 AERKQRIRAMLNPVST 75


>gi|163804119|ref|ZP_02197900.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. AND4]
 gi|159172068|gb|EDP57026.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. AND4]
          Length = 193

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 67/199 (33%), Gaps = 17/199 (8%)

Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
                EV       Q +     K+D L+    + +     + V+++++       L EV 
Sbjct: 1   QADAPEVLKNQAVMQAILSPEVKEDGLN-SEAIEIAPEHIIVVRVEDARDETVLPLVEVR 59

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
             V      VK  + V     ++V    KEG   +DI             ++R       
Sbjct: 60  DQVVAKLSHVKGEQGVIELGTKVVAAL-KEGN--QDILAENNLVFGEQESVDRRS----- 111

Query: 544 FGYDGISQVFSG--PVEMVKCFPI--ENGLSYVVFKVTNSKVGPVQEKDKFIS-YLTQMM 598
                 S VF+   P      +    +   + V+ ++           ++ +S  + +  
Sbjct: 112 ---PLASSVFAMAKPEGDKPVYGQSKDQAGNVVIVELDAVHEELDSALEEQVSMQMQRAS 168

Query: 599 NKDLLDSVIAYLKSQYSVT 617
           ++  L SVIA L++   + 
Sbjct: 169 SQQDLSSVIAVLRANTDIK 187


>gi|262383884|ref|ZP_06077020.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_33B]
 gi|262294782|gb|EEY82714.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_33B]
          Length = 454

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 88/261 (33%), Gaps = 46/261 (17%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP----------SNAVLTQWFEKY----KDNYRA 226
             ++ Y     +D I +N   V    D           S   L ++F K     KD  R 
Sbjct: 69  AIQKLYLNQAKIDSITVNENQVIQSVDQWMNMAVNQIGSREKLEEYFGKKFSQIKDE-RK 127

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQ---K 281
              +    +     +   +I+++  E++  + +         P    V+ +    +   +
Sbjct: 128 EAMREQQVVQQMQQQLIGEIKLTPSEVRKYFSQLSQDSLPNIPTTVEVQIVTLEPKIPFE 187

Query: 282 EADEAFQSLK-------KGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSI 329
           E D     L+        GK +F  LA    E+ G +     LG  SK  +     A+  
Sbjct: 188 ETDAIKARLRDFTEQVNSGKMEFSTLARLYSEDPGSASRGGELGFMSKTQLL-PEFANVA 246

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK-VKEDY 388
           F+L      + ++   +GY I  +   +            +  + +   K S+K + +  
Sbjct: 247 FNLKDPKRVSQIVQTEYGYHIIQLIEKRGDRI--------NCRHILLKPKVSDKELADAT 298

Query: 389 KRL----EEFLALGTSMDEIS 405
            RL     +  A   + +E +
Sbjct: 299 TRLDSLYNDLQANKFTFEEAA 319


>gi|172064761|ref|YP_001812411.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
 gi|171998246|gb|ACB69162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
          Length = 282

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 74/233 (31%), Gaps = 16/233 (6%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
             V G   +   +D   R   +  +          + A      A     +    +   A
Sbjct: 39  ATVNGTAITQAEVDTVLRASRQPDTPQVRQAIKNQLIARVLIQQAAEKANYGSKPEVQTA 98

Query: 227 PEYKRI-SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
            +  +  +     + +  K   +++ +++A Y++        E +    +V  +   A  
Sbjct: 99  MQVAKANAETQLYLKDNVKPEPVTDAQIKARYDEIVASLGKDEYKP-RLIVVKDAATAAT 157

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLADSIFSLAK 334
               LK GK F  LA +   + S  + G              K     V++A ++  L  
Sbjct: 158 VLAELKAGKPFDGLARQYSIAPSRDAGGELPWVSFKTPAAEGKTAGLPVAIAQALDKLPV 217

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ---MRITKASEKV 384
                  I       I  +   +P+   +F + +  I  Q   + + KAS + 
Sbjct: 218 GAVTPESIAVDNARAIVKLDAKRPTQVPTFNQAQATIHQQLEALALEKASAQF 270


>gi|328948669|ref|YP_004366006.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Treponema
           succinifaciens DSM 2489]
 gi|328448993|gb|AEB14709.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Treponema
           succinifaciens DSM 2489]
          Length = 505

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/528 (10%), Positives = 139/528 (26%), Gaps = 103/528 (19%)

Query: 3   EIIRKASRTWVAKIFLVVLFVPFLIWG---LSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           +  +K S    A I LV+  + FL +G   +  ++F+   +ST  S   + + +      
Sbjct: 10  QKTKKDSSKIGAVIILVISALVFLPFGASAVFQSIFNKQKASTFGSYNGKNITYEPGTKF 69

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +     +           +      + ++     V        ++  G       V   +
Sbjct: 70  FITVSNLAQSYQAGGYKVDENSYYRIMREAFYQTVINMAFTDSVKKSGYIVPKEAVNRFV 129

Query: 120 ARSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV------------- 165
                F      KFS   +              ++   K +    V              
Sbjct: 130 --IESFTDPSTGKFSQKAYNQ-------TSAVDLEKLRKDIESNLVYKRYFYDLFGAGNE 180

Query: 166 ----GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
               G  + G++ S            E  S D +  +  + P           ++ ++  
Sbjct: 181 VSFNGTPLYGLKRSGAEKKFLASMGAEKHSFDAVAFSTANFPKEEAV------KFGKENA 234

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           + +       I Y                                     +  +   +++
Sbjct: 235 EKF-------IKY------------------------------------DLSVITVDDEQ 251

Query: 282 EADEAFQSLKKGK-KFIQLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAK-- 334
           EA    + +   +  F   A E+           + G++  +    +   DS+  L K  
Sbjct: 252 EAKALLKQINGNEITFADAASEKSQKYYSDAEGKNAGAYRYQIENMLDNVDSLAELEKLQ 311

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           K + + +I    GY I    +   +       V+  +   +   + S       +  E F
Sbjct: 312 KDEISAIIKTKRGYSIFKCDDSVVAADFEDSTVQDAVLGYINSNEKSYIENYFLEIAENF 371

Query: 395 LALGT--SMDEISRREKIVSIDLPLVD-------FAGKDVKGKEVAAIPYKEQLLFRVFG 445
           ++     S D   ++  +   ++                 +   +A I   E      F 
Sbjct: 372 VSEAAISSFDSACKKFNVEKSEVQPFPVNYGSSSIYSSVSETGPLARIASNEDAYKTAFS 431

Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
                     +   +   + ++            +EV    + + +  
Sbjct: 432 LKQDEISSPFILGSN--VVVLKCTGIQT------DEVEDASETEIRNA 471


>gi|307294654|ref|ZP_07574496.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobium
           chlorophenolicum L-1]
 gi|306879128|gb|EFN10346.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobium
           chlorophenolicum L-1]
          Length = 461

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 82/319 (25%), Gaps = 83/319 (26%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V  + +  +         L +I    G  V+ E      L  ++L NL+      Q  
Sbjct: 73  AIVNGRIITGTDVDQR----LALILTANGGKVSDEE--KERLRVQVLRNLIDETLQIQEA 126

Query: 104 EDIGLEADHGRVWGEIARSPL-FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
               ++ D   +     R    F    ++F        L  +G +           L+  
Sbjct: 127 AANDIKVDKAEIDQSYERVAANFRQSPSQFD-----QYLRAQGSSSASIKRQIEGELA-- 179

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
                                          +  L  R++    + S   +    ++   
Sbjct: 180 -------------------------------WSRLLRRNIQPFVNVSEDEVKSVVDRMNA 208

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
              + EY+ I  I      + ++  +                                  
Sbjct: 209 AKGSDEYR-IGEIYLSATPENQQQIV--------------------------------AN 235

Query: 283 ADEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           A    + +K+G  F   A    E   +     LG      +PD  LA +   + + G   
Sbjct: 236 ARNIIEQIKQGGSFAAYARQFSEASTAAVGGDLGWVRPAQLPD-ELAQAAAEM-QVGQLA 293

Query: 340 PVIHGSFGYVIAHVSNIKP 358
             I    G  I +V + + 
Sbjct: 294 GPIAVPGGVSIIYVMDKRK 312


>gi|293571240|ref|ZP_06682274.1| foldase protein PrsA [Enterococcus faecium E980]
 gi|291608647|gb|EFF37935.1| foldase protein PrsA [Enterococcus faecium E980]
          Length = 303

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 72/199 (36%), Gaps = 21/199 (10%)

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY---KRISYILFDVHEKEKKIEISNDEL 253
           ++ + + +  D +   L   F+    +    E      I   L      +K I++++++L
Sbjct: 72  VSTKEIDSQYDQTKKQLGDSFDSQLKSAGYTEQTFKDSIKQSLAFQEGLKKHIKLTDEDL 131

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
           +  +E              + +   ++ +A +  ++  KG  F +LA+++    +    G
Sbjct: 132 KTAWESFHP------EVEAQIIQVASEDDAKDVKKAADKGDDFSKLAKDKSTDTTTKEDG 185

Query: 314 SFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFG------YVIAHVSNIKPSFTVS 363
              K           + ++ F L K G  + VI  +        Y +  +   +      
Sbjct: 186 GKVKFDSTTTTVPAEVKEAAFKL-KDGQVSDVITSTNASTYTTEYYVVKMMKNQNKGN-D 243

Query: 364 FQEVKKDIANQMRITKASE 382
             + KK++      TK S+
Sbjct: 244 MDKYKKELKEIATDTKLSD 262


>gi|227552245|ref|ZP_03982294.1| peptidylprolyl isomerase [Enterococcus faecium TX1330]
 gi|227178624|gb|EEI59596.1| peptidylprolyl isomerase [Enterococcus faecium TX1330]
          Length = 303

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 72/199 (36%), Gaps = 21/199 (10%)

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY---KRISYILFDVHEKEKKIEISNDEL 253
           ++ + + +  D +   L   F+    +    E      I   L      +K I++++++L
Sbjct: 72  VSTKEIDSQYDQTKKQLGDSFDSQLKSAGYTEQTFKDSIKQSLAFQEGLKKHIKLTDEDL 131

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
           +  +E              + +   ++ +A +  ++  KG  F +LA+++    +    G
Sbjct: 132 KTAWESFHP------EVEAQIIQVASEDDAKDVKKAADKGDDFSKLAKDKSTDTTTKEDG 185

Query: 314 SFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFG------YVIAHVSNIKPSFTVS 363
              K           + ++ F L K G  + VI  +        Y +  +   +      
Sbjct: 186 GKVKFDSTTTTVPAEVKEAAFKL-KDGQVSDVITSTNASTYNTEYYVVKMVKNQNKGN-D 243

Query: 364 FQEVKKDIANQMRITKASE 382
             + KK++      TK S+
Sbjct: 244 MDKYKKELKEIATDTKLSD 262


>gi|254302665|ref|ZP_04970023.1| hypothetical protein FNP_0293 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322857|gb|EDK88107.1| hypothetical protein FNP_0293 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 227

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 77/194 (39%), Gaps = 5/194 (2%)

Query: 228 EYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           E   I Y L  +  +  +   I  + L+  YE+N+  Y  P+   ++ +   +  +A+E 
Sbjct: 33  ESLFIRYFLEREAAKIVENTNIEENVLKKIYEENQTLYKFPKKVKIDTIFVKDLAKAEEI 92

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFT-PVIH 343
            + +   + F +L E+  +   +    +    ++ +   ++A+ I S  +K       I 
Sbjct: 93  LKEV-NLENFNELKEKNDEKGQEAKGVTDEFLFVTEIHPAIAEEILSENQKNIIIKKAIP 151

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
              G+ I ++ +I+      F E ++ I   ++     +   +  + +           +
Sbjct: 152 VQEGFHILYLKDIEEERQAIFDEARETILADVKRNIFGQVYNQLIEDIANETVRPKDPVK 211

Query: 404 ISRREKIVSIDLPL 417
           I + ++  + +  L
Sbjct: 212 IEKNKEDKNTETKL 225


>gi|69246901|ref|ZP_00604176.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           DO]
 gi|257879190|ref|ZP_05658843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,230,933]
 gi|257881991|ref|ZP_05661644.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,502]
 gi|257883808|ref|ZP_05663461.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,501]
 gi|257890020|ref|ZP_05669673.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,410]
 gi|258615590|ref|ZP_05713360.1| rotamase family protein [Enterococcus faecium DO]
 gi|260560163|ref|ZP_05832340.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           C68]
 gi|293553404|ref|ZP_06674035.1| foldase protein PrsA [Enterococcus faecium E1039]
 gi|293559520|ref|ZP_06676057.1| foldase protein PrsA [Enterococcus faecium E1162]
 gi|293567397|ref|ZP_06678746.1| foldase protein PrsA [Enterococcus faecium E1071]
 gi|294617171|ref|ZP_06696826.1| foldase protein PrsA [Enterococcus faecium E1679]
 gi|294621809|ref|ZP_06700967.1| foldase protein PrsA [Enterococcus faecium U0317]
 gi|314939171|ref|ZP_07846427.1| putative foldase protein PrsA [Enterococcus faecium TX0133a04]
 gi|314941489|ref|ZP_07848377.1| putative foldase protein PrsA [Enterococcus faecium TX0133C]
 gi|314947443|ref|ZP_07850862.1| putative foldase protein PrsA [Enterococcus faecium TX0082]
 gi|314950587|ref|ZP_07853668.1| putative foldase protein PrsA [Enterococcus faecium TX0133A]
 gi|314992441|ref|ZP_07857864.1| putative foldase protein PrsA [Enterococcus faecium TX0133B]
 gi|314996693|ref|ZP_07861717.1| putative foldase protein PrsA [Enterococcus faecium TX0133a01]
 gi|68195030|gb|EAN09494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           DO]
 gi|257813418|gb|EEV42176.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,230,933]
 gi|257817649|gb|EEV44977.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,502]
 gi|257819646|gb|EEV46794.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,501]
 gi|257826380|gb|EEV53006.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,410]
 gi|260073730|gb|EEW62055.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           C68]
 gi|291589914|gb|EFF21713.1| foldase protein PrsA [Enterococcus faecium E1071]
 gi|291596571|gb|EFF27809.1| foldase protein PrsA [Enterococcus faecium E1679]
 gi|291598592|gb|EFF29651.1| foldase protein PrsA [Enterococcus faecium U0317]
 gi|291602417|gb|EFF32638.1| foldase protein PrsA [Enterococcus faecium E1039]
 gi|291606582|gb|EFF35979.1| foldase protein PrsA [Enterococcus faecium E1162]
 gi|313589177|gb|EFR68022.1| putative foldase protein PrsA [Enterococcus faecium TX0133a01]
 gi|313593016|gb|EFR71861.1| putative foldase protein PrsA [Enterococcus faecium TX0133B]
 gi|313597212|gb|EFR76057.1| putative foldase protein PrsA [Enterococcus faecium TX0133A]
 gi|313599706|gb|EFR78549.1| putative foldase protein PrsA [Enterococcus faecium TX0133C]
 gi|313641518|gb|EFS06098.1| putative foldase protein PrsA [Enterococcus faecium TX0133a04]
 gi|313646101|gb|EFS10681.1| putative foldase protein PrsA [Enterococcus faecium TX0082]
          Length = 303

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 72/199 (36%), Gaps = 21/199 (10%)

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY---KRISYILFDVHEKEKKIEISNDEL 253
           ++ + + +  D +   L   F+    +    E      I   L      +K I++++++L
Sbjct: 72  VSTKEIDSQYDQTKKQLGDSFDSQLKSAGYTEQTFKDSIKQSLAFQEGLKKHIKLTDEDL 131

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
           +  +E              + +   ++ +A +  ++  KG  F +LA+++    +    G
Sbjct: 132 KTAWESFHP------EVEAQIIQVASEDDAKDVKKAADKGDDFSKLAKDKSTDTTTKEDG 185

Query: 314 SFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFG------YVIAHVSNIKPSFTVS 363
              K           + ++ F L K G  + VI  +        Y +  +   +      
Sbjct: 186 GKVKFDSTTTTVPAEVKEAAFKL-KDGQVSDVITSTNASTYTTEYYVVKMVKNQNKGN-D 243

Query: 364 FQEVKKDIANQMRITKASE 382
             + KK++      TK S+
Sbjct: 244 MDKYKKELKEIATDTKLSD 262


>gi|325576844|ref|ZP_08147459.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325161050|gb|EGC73168.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 310

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/370 (11%), Positives = 109/370 (29%), Gaps = 80/370 (21%)

Query: 23  VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
           + F + GL     + +    V +V    +         + ++  +  K G          
Sbjct: 9   LLFAMIGLFTFSQAQAEERVVATVNGTPI--------LQSQVNAVMGKKGSQ-------- 52

Query: 83  VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142
               +  LD ++     ++ I++ G++ +   V   +          N  ++  F+  L 
Sbjct: 53  ----RAALDKIIDDMLTEKAIKESGVKVNQAEVNRIVEDIAA----KNGLTYGQFLDALD 104

Query: 143 REGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
            +GI+   +    ++ +    V        +   ++  +Q +    +           + 
Sbjct: 105 YQGISLNAFKQQISRQMLMAGVRNHAIQNSV---DVTREQVEALGKQMLDEAKAKGTAQK 161

Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
           V                             + +IL  ++         + + +AE E   
Sbjct: 162 VMGKE-----------------------YEVRHILLKLNPLLD-----DAQAKAELE--- 190

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
                   R   +++      AD A +           +++     +  SLG    E   
Sbjct: 191 --------RIRSEIILGKMTFADAALK----------YSKDYLSGANGGSLGYAFPEAYV 232

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
               A  +     +G  +      FG+ I  V+  +     +    ++    Q+  ++  
Sbjct: 233 GP-FAKMV-ETTPQGTVSAPFKSEFGWHILEVTGSRDG-DKTEDAYRQKAYEQIVNSQLQ 289

Query: 382 EKVKEDYKRL 391
           E  K+  K L
Sbjct: 290 EATKDWVKAL 299


>gi|265767845|ref|ZP_06095377.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
 gi|263252517|gb|EEZ24045.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
          Length = 517

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/423 (12%), Positives = 125/423 (29%), Gaps = 66/423 (15%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVE-----------QLVFPNQKEADEAFQSLKKGKK-- 295
                +  Y++ K +  + E++ +              +   Q   D  +  L+      
Sbjct: 107 DEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPHHLREAQILMDSLYHVLETHPDID 166

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F  L  +      +  +G             +  FSL K G+++       G  I  V+ 
Sbjct: 167 FRTLVNKYSDDKKEFWMGWLQTS----QEFEEVAFSL-KDGEYSKPFFTPKGIQIIKVTG 221

Query: 356 IKPSFTVSFQEVKKDIANQMRI----TKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            +      F++++ ++ +++       K  E      K   ++      M+E+       
Sbjct: 222 RRE--IPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKSTCQYTPDKAGMEEL------- 272

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
            + L         + GK      ++        G    L+     ++ D  Y   ++++ 
Sbjct: 273 -LALGRTSRTLFTLDGKSFTGKDFERFADAHPMGIKRQLNAFVVKSILD--YENNRLEQK 329

Query: 472 IPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
            P     L++   D +       ++ +   S +  L   + +   ++         ++L 
Sbjct: 330 YPDFRLALQQRRDDLLLAAITRRESRQVSLSDSVALKAFFKEHRTDYNWDSPRYRGAVLH 389

Query: 531 TNQINRMDNENKFFG-------YDGISQVFSGPVE----MVKCFPIENGLSYVVFKVT-- 577
                 + +  KF          D I   F+ P       ++      G +  V K+   
Sbjct: 390 GTHKKTLKSARKFLKKLPEEEWKDAIRLTFNTPASPATIRIEQGTFAEGDNVFVDKLVFK 449

Query: 578 -----------------NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
                              K GP    +  I  L +     L       L++   V ++ 
Sbjct: 450 KGDFEPLKSYPFTVVLGEKKKGPESYHE-IIPQLIRDYQNHLDALWTERLRASAKVEINQ 508

Query: 621 NLI 623
            ++
Sbjct: 509 EVL 511


>gi|261416875|ref|YP_003250558.1| hypothetical protein Fisuc_2490 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373331|gb|ACX76076.1| hypothetical protein Fisuc_2490 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325951|gb|ADL25152.1| putative lipoprotein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 693

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/394 (14%), Positives = 124/394 (31%), Gaps = 73/394 (18%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ-----ELGMISQKIGFV 74
           ++F  F    LS         + V  V  + +    +    +          + +    +
Sbjct: 6   LVFCSFCALVLSGCNSIGDKDTLVARVNGEPIFKEDYAFMMRVGNIVPNTEQMRKASSSL 65

Query: 75  VNSERARSVGLDK--KILDNLVS-GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
            + +   +V L K  ++ + L +    L+ ++           V+  +         D++
Sbjct: 66  FSRKALYTVALQKNPELKEQLEAHNVALENYLLTF--------VYQRLYTMDRLMYTDDE 117

Query: 132 --FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
             F +D              ++ D  + M  R  V        +      D  K + F++
Sbjct: 118 LAFYYDKHR----------DQFADSLSYMNLRDKVADA-----KYIESNYDSLKSYAFKH 162

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           R +                ++  +   ++  K+ + +   +RI  +        KK  I 
Sbjct: 163 RDL--------------SDTSREVKITYD-IKERFVSDHRQRI--VRETGPALLKKYNIQ 205

Query: 250 NDELQ-----AEYEKNKEKYFSPEIRTVEQLVFPNQKE-ADEAFQSLKKGKKFIQLAEEQ 303
             E+Q     A YEK+K  Y +P    V  +   +  + A          K F+++A + 
Sbjct: 206 ETEIQMPSAEAYYEKHKNLYMTPGGFVVYHVESADSAKLAKRFKGKKVDLKGFMKIASKF 265

Query: 304 GKSLSD-ISLGSFSK-----------EYIPDVSLADSIFSLAKKGDFTPVIHGS--FGYV 349
            ++     + G   K            ++P++ +        K G  + VI       Y 
Sbjct: 266 SENKDTKAAKGFVGKVVYGHPLPYGIGFVPNMFV---ALDTLKDGAISSVIKSESTGRYH 322

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           + +  ++          V+K I   +  T   E 
Sbjct: 323 VFYRESVVQPEQKPLDRVRKSIERDLATTANYEL 356


>gi|221234696|ref|YP_002517132.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
 gi|220963868|gb|ACL95224.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
          Length = 449

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/414 (10%), Positives = 117/414 (28%), Gaps = 91/414 (21%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
             S    V    +     +   +    ++    G     E      ++++ L +L+    
Sbjct: 54  SESVAAVVNDDIISSYDLMQRMR----LLMATSGMQPTQENL--PQIEQEALRSLIDERL 107

Query: 99  LDQFIEDIG------LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
             Q ++ +       + +    V  +I        + N+   +    +L  +GI    + 
Sbjct: 108 QMQELKRVEKQQKITIISTDKEVEEQIGDI----AQSNRLQPEQLKQQLVAQGIGLDTWR 163

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
                                      + + + + + R    + +               
Sbjct: 164 AQLR----------------------AESSWQSWIQGRYGSRLRI-----------GEDQ 190

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
           +  +  +  D    P+Y+     L        ++ ++                       
Sbjct: 191 IKAYQRRLADAAAKPQYQISEVFLDAARVGGMEVAVN----------------------- 227

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSI 329
                     A +    +++G  F  +A +      + +   +G  S+  +P     D+ 
Sbjct: 228 ---------GATQLINQMQQGAPFAAVARQFSGSATAANGGEVGWVSQGEMPTE--VDAA 276

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
               + G  +  I    G  I ++ + +     +  ++K  +A  +       ++    K
Sbjct: 277 LEQLRPGQLSRPIQVKDGVYIIYLRDKRAGSKTAIVDLK-QVAAPLAADATEAQIAAATK 335

Query: 390 RLEEFLALGTSMDEI----SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           +L +     TS   +    ++ + +V+ DL   +        +E A      Q+
Sbjct: 336 QLVDLKPKITSCQSLEATAAKVDGLVAGDLGEAEITDLAPAFQEAANKLEVGQI 389


>gi|207725035|ref|YP_002255432.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum MolK2]
 gi|206590265|emb|CAQ37226.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum MolK2]
          Length = 278

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 69/236 (29%), Gaps = 25/236 (10%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            +++  +          +N    Q  +   +      +           +   AV     
Sbjct: 40  QVTQAQLDRAIAQSGAQAN---PQIAQALKQQLIARELFRQQAAKNPAYEKLPAVKQAMQ 96

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E +                  + +  K   I++++++A Y+         E +    +  
Sbjct: 97  EAH----------DAVITQAWLKDNIKPAPITDEQVKARYDAIVASLGDKEYK-ARVIQL 145

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLA 326
            +   A +    LK+G  F +LA++   + + +  G              K     + LA
Sbjct: 146 GDDVTAAQVLALLKQGGDFAKLAQQYSTAPNKVRGGDMDWVSFKVPAEEGKTQNLPLPLA 205

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             I +L      T  +       I  V   +P+   ++  VK  I   +   +   
Sbjct: 206 REIAALGIGATSTAPVEVGSQRYIVKVEAARPTQVPAYDTVKAAIRQALESAELER 261


>gi|57339632|gb|AAW49803.1| hypothetical protein FTT0468 [synthetic construct]
          Length = 508

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/306 (10%), Positives = 84/306 (27%), Gaps = 74/306 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           + TV  V  + +          + L  +     F  +        L ++ L +L+S + L
Sbjct: 84  NKTVAIVNSRPITSFELDQELAK-LEAMQPNSAFNTDP-------LKRQALQDLISQSVL 135

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E   +   + ++   I          N  S +     +   G++   Y       L
Sbjct: 136 LQLAERNNIMISNQQLDSAIQDIAA----KNGVSVESLKLNVEAAGMSFDSYKKRIRDQL 191

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             + +                                   + +      S   + ++ +K
Sbjct: 192 MISQLQ---------------------------------QQAIAQQVYVSPEEIQKYIKK 218

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           ++  +         Y L       K + ++  + +   +K  + +               
Sbjct: 219 HQKEFDREMSPVKLYTL-------KNLIVALPDSKKARQKKIDLF--------------- 256

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKG 336
                +   ++  G   F ++ ++  ++ + +S G  S++   D    +        K  
Sbjct: 257 ----KKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKNH 312

Query: 337 DFTPVI 342
             +   
Sbjct: 313 QVSQPF 318


>gi|322698453|gb|EFY90223.1| Peptidyl-prolyl cis-trans isomerase PIN4 [Metarhizium acridum CQMa
           102]
          Length = 124

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA   L  G KF ++A    +  +    +LG  +K  + D    +  
Sbjct: 35  VRHILCEKHAKKEEALAKLNDGVKFDEVARNYSEDKARQGGALGWKTKGSL-DPKFEEVA 93

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           F+L +               FGY I  V   K
Sbjct: 94  FAL-EPSTTNNPKIAEARTEFGYHIIMVEGRK 124


>gi|254417887|ref|ZP_05031611.1| SurA N-terminal domain family [Brevundimonas sp. BAL3]
 gi|196184064|gb|EDX79040.1| SurA N-terminal domain family [Brevundimonas sp. BAL3]
          Length = 393

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 12/147 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V +V  + +            +          V         + +  L+ L+     
Sbjct: 3   DGIVATVNDKIITGFDLRQQMLMLIAS------SQVQPTEQNLPAIQQAALNRLIEQRLK 56

Query: 100 DQFIED-IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
            Q I     L+     +  EIA+      +    +   ++  L + GI    + +     
Sbjct: 57  AQEITKFESLKVTDQEIDEEIAQM----ARQAGVTPAAYMEFLQQGGIQPNAFRESLRTE 112

Query: 159 LSRTDVV-GMFVGGMRPSNLLLDQAKR 184
           +    +V G F    RPS L +DQ  R
Sbjct: 113 IGWGQLVPGRFNSRARPSTLQVDQEVR 139



 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 76/250 (30%), Gaps = 19/250 (7%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK---Y 220
           +    +  +    L   +  +F     +   I      +   A  + A   ++ ++    
Sbjct: 42  IQQAALNRLIEQRLKAQEITKFESLKVTDQEIDEEIAQMARQAGVTPAAYMEFLQQGGIQ 101

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEIS----NDELQAEYEKNKEKYFSPEIRTVEQLV 276
            + +R      I +          +   S    + E++   +   +  +      +E   
Sbjct: 102 PNAFRESLRTEIGWGQLVPGRFNSRARPSTLQVDQEVRRLNDAAAQPQYLIGEIYIEAAR 161

Query: 277 FPNQKEA----DEAFQSLKKGKKFIQLAEEQGKSLSD-----ISLGSFSKEYIPDVSLAD 327
              Q+ A     +  Q + +G  F  +A++   + S         G   K  +       
Sbjct: 162 VGGQEAAMNGARQLVQQIIQGAPFQAVAQQFSSAPSASARVPGDAGWVVKGTV--QPALQ 219

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           +IF   + G  +  I    G  I ++ + +     S   ++  +  ++  T +   +   
Sbjct: 220 TIFDQLQPGQLSNPIAVDGGVYIIYMRDKRDGAATSLVSLR-QLMVELPETASEADLAAA 278

Query: 388 YKRLEEFLAL 397
            + LE     
Sbjct: 279 TRTLEGLRQG 288


>gi|110833403|ref|YP_692262.1| peptidyl-prolyl isomerase [Alcanivorax borkumensis SK2]
 gi|110646514|emb|CAL15990.1| peptidylprolyl isomerase [Alcanivorax borkumensis SK2]
          Length = 269

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 65/170 (38%), Gaps = 20/170 (11%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPN-QKEA----------DEAFQSLKKG-KKFI 297
           +++ +  ++   +++  P       ++      +A           +  Q L+   ++F 
Sbjct: 94  DEDCRRFHKVEIDRFSEPCQVLTRHILLAAGPDDARSRDSQYHQGQKLIQQLRDAPQRFP 153

Query: 298 QLAEEQGKSLS---DISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +LA+   +  S      LG     + IP++   D +     +G     +   +G+ + H+
Sbjct: 154 ELAQRFSQCPSKDQGGELGWLQLGQTIPEL---DKVLQRLPEGLHARPLPTRYGWHVVHI 210

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMD 402
              + S  + +++V++ + + +        ++     LE +    G  +D
Sbjct: 211 IERRESRPLPYEQVEERVRHTLTEQATRRALRHYLLALEADIGVKGFQLD 260


>gi|293115632|ref|ZP_05792424.2| putative PPIC-type PPIASE domain protein [Butyrivibrio crossotus
           DSM 2876]
 gi|292809199|gb|EFF68404.1| putative PPIC-type PPIASE domain protein [Butyrivibrio crossotus
           DSM 2876]
          Length = 327

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 9/127 (7%)

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
            + +A EA Q ++ G  F+ LAEEQ      I    F K  I D     + + L + G  
Sbjct: 189 AENKASEALQKIEDGTDFLTLAEEQSDD--SIHSMEFYKG-IYDKDFETAAYKL-ETGQV 244

Query: 339 TPVIHGSFGYVIAH-VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
           + V+   +GY I   +++   S T    + K +I  + R    ++K ++  ++ ++ L  
Sbjct: 245 SSVVETKYGYYIIKCINDNIESDT---AKRKSEIVLKRREELFADKFRQLAEK-KDILFN 300

Query: 398 GTSMDEI 404
              + +I
Sbjct: 301 EKYLKKI 307


>gi|309792550|ref|ZP_07687012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
           trichoides DG6]
 gi|308225364|gb|EFO79130.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
           trichoides DG6]
          Length = 523

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 10/130 (7%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPD-- 322
              ++ L    +  AD     L+ G  F  LA E+            LGSF K+   D  
Sbjct: 302 QEQIDALFVTAKARADALLADLRNGADFATLAAEESDDPGSASMGGDLGSFDKDGKADNG 361

Query: 323 ---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKDIANQMRIT 378
                   +          +  +   FG+ I  V++   P+     +E +    +     
Sbjct: 362 ATYPPELVAAALALPANTLSEPVRTQFGWHILEVTDRTVPTEEDQLREARTKALDDWLTQ 421

Query: 379 KASEKVKEDY 388
           + S    + +
Sbjct: 422 QRSAIAVQRF 431


>gi|170698305|ref|ZP_02889381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria IOP40-10]
 gi|170136796|gb|EDT05048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria IOP40-10]
          Length = 282

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 70/224 (31%), Gaps = 14/224 (6%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD-NYR 225
             V G   ++  ++   +   +  +          + A      A     +    +    
Sbjct: 37  ATVNGTPITDAEVNAVLQASKQPDTPQIRQAIKNQLIARVLIQQAAEKAKYGDKPEVQAA 96

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
               K  +     + +  K   +++ +++A Y++        E++    +V  +   A  
Sbjct: 97  MQAAKANAEAQLYLKDNIKPAPVTDAQVKARYDEIVGSLGKEEVKP-RIIVVKDAATAAT 155

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLADSIFSLAK 334
               LK G+ F  LA +  ++ S  + G                    + +A ++  L  
Sbjct: 156 VLAQLKAGQTFDALARQYSQAPSAGAGGELPWVSFKMPLVEGNTQGLPLPVAQAMTKLPA 215

Query: 335 KGDFTPVIHGSFG-YVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
            G     I    G   I  +   +P+   ++   +  I  Q++ 
Sbjct: 216 GGVTADFIPLGNGARAIVKIDAKRPTQVPAYDTAQSTIRQQLQA 259


>gi|19703608|ref|NP_603170.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713714|gb|AAL94469.1| Peptidyl-prolyl cis-trans isomerase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 231

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 64/170 (37%), Gaps = 3/170 (1%)

Query: 228 EYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           E   I Y L  +  +  +   I  + L+  YE+N+  Y  P+   ++ +   + ++A+E 
Sbjct: 37  ESLFIRYFLEREATKIVENTNIEENVLKKIYEENQNLYKFPKKVKIDTIFVKDLEKAEEI 96

Query: 287 FQS--LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            +   LK      +  +E+G+    ++        I    + + +    K       I  
Sbjct: 97  LKEINLKNFSSLKEKNDEKGQEAKAVTDDFLFVTEIHPALVEEILKEEKKNVILKKAIPV 156

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
             G+ I ++ +I+      F E ++ I   ++     +   +  + +   
Sbjct: 157 QEGFHIVYLKDIEDERQAIFDEARETILADVKRNIFGQVYNQLIEDIANE 206


>gi|305664741|ref|YP_003861028.1| putative exported peptidyl-prolyl cis-trans isomerase [Maribacter
           sp. HTCC2170]
 gi|88707863|gb|EAR00102.1| putative exported peptidyl-prolyl cis-trans isomerase [Maribacter
           sp. HTCC2170]
          Length = 483

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 82/264 (31%), Gaps = 44/264 (16%)

Query: 141 LAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
           L  +G + E          L    +       ++ S L+ D       E +   ++    
Sbjct: 83  LKSQGAMTEDITRCGLLGKLMEDRLYAH--QAVQDSLLVSDDEVSLTTERQIQSFV---- 136

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD---VHEKEKKIEISNDELQAE 256
             + ++A      L  + ++ + + R    K     +           +IEI+ +E++  
Sbjct: 137 AQMGSMAKL----LKFYKKENEASLREDINKINKLRMLSEKMQSSIVSEIEITPEEVRQF 192

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-------------KKGKKFIQLAEEQ 303
           + K  E         +E      Q +A E  +                   KF   A   
Sbjct: 193 FNKIPEDERPVFGAEMEISQIVKQPKATEIEKQKVIDKLSAIKADVEDNDAKFSVKAILY 252

Query: 304 GKSLSDISLGSF---SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK--- 357
            +     S G F   +K+   D +  D  FS+ ++G  +      FG+ + ++  I+   
Sbjct: 253 SQDPGSKSKGGFYSITKDTGFDKTFKDVAFSM-QEGAVSEPFETMFGFHLIYIEKIRGQE 311

Query: 358 ----------PSFTVSFQEVKKDI 371
                          S  E K ++
Sbjct: 312 LDLRHILITPEISQESLDEAKTEL 335


>gi|321477932|gb|EFX88890.1| hypothetical protein DAPPUDRAFT_191361 [Daphnia pulex]
          Length = 158

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 267 PEIRTVEQLVFPNQKEADEA----FQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEY 319
           P     + +    ++  D       Q +     F +LA +      +     LGSF +  
Sbjct: 65  PSSWRQDNITISKEEAMDLLVGYQEQIINGEASFAELASKYSDCSSAKKGGDLGSFGRGA 124

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           +      D+ FSL K G  +  +    G  I 
Sbjct: 125 MQKP-FEDAAFSL-KVGGMSEPVWTDSGVHII 154


>gi|320581233|gb|EFW95454.1| Peptidylprolyl-cis/trans-isomerase (PPIase) [Pichia angusta DL-1]
          Length = 469

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 43/144 (29%), Gaps = 29/144 (20%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--------------- 278
           Y            E ++ +    Y    +    P+      ++                 
Sbjct: 327 YNPSTSESIWTPPEGTDKDALDLYLS--KNLHKPKKVAARHILVKHRDSRRPSSWKEQNI 384

Query: 279 --NQKEADEA----FQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++EA E        ++ G+  F ++A E     S   +  LG F    +   S   +
Sbjct: 385 TRTKEEAVELIKGYKAQIESGEASFEEIASEHSDCSSHSKNGDLGYFGPGEM-QPSFEKA 443

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAH 352
            F L + G+ + V+    G  +  
Sbjct: 444 AFGL-QVGELSDVVESDSGIHLIE 466


>gi|134302454|ref|YP_001122424.1| hypothetical protein FTW_1602 [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050231|gb|ABO47302.1| hypothetical protein FTW_1602 [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 467

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/486 (11%), Positives = 144/486 (29%), Gaps = 96/486 (19%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           + TV  V  + +          + L  +     F  +        L ++ L +L+S + L
Sbjct: 52  NKTVAIVNSRPITSFELDQELAK-LEAMQPNSAFNTDP-------LKRQALQDLISQSVL 103

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E   +   + ++   I          N  S +     +   G++   Y       L
Sbjct: 104 LQLAERNNIMISNQQLDSAIQDIAA----KNGVSVESLKLNVEAAGMSFDSYKKRIRDQL 159

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             + +                                   + +      S   + ++ +K
Sbjct: 160 MISQLQ---------------------------------QQAIAQQVYVSPEEIQKYIKK 186

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           ++  +         Y L       K + ++  + +   +K  + +               
Sbjct: 187 HQKEFDREMSPVKLYTL-------KNLIVALPDSKKARQKKIDLF--------------- 224

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKG 336
                +   ++  G   F ++ ++  ++ + +S G  S++   D    +        K  
Sbjct: 225 ----KKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKNH 280

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK----DIANQMRITKASEKVKEDYKRLE 392
             +     +    + ++ NI     +  ++V K     I  ++      +  K   +R +
Sbjct: 281 QVSQPFIVNHTLQMIYIDNIDEKAPILSKKVTKYYVYAIEIKLDGGMNEDGAKSSLERAK 340

Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
             +  G    +++ +           D+   +   + VA +     L    F +   L +
Sbjct: 341 LAIESGQEFTKVALKYN--------QDYDHPNGNFRWVAELDSPPSLPPAAFAQLKQLKE 392

Query: 453 DH-TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV-SSKANQLVLEY 510
           +  +         W+ IK +     ++ +       +  K  K  E + S KA ++   +
Sbjct: 393 NELSEPFQADGRTWMIIKYTK---TKEYD-----AAEQLKEQKALEAIFSEKAQEIYKTW 444

Query: 511 SKEGKN 516
               K+
Sbjct: 445 LTSMKD 450


>gi|88704442|ref|ZP_01102156.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88701493|gb|EAQ98598.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 263

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 9/163 (5%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
           + +    +E S DELQ  YE     Y      ++    F + +  D    +         
Sbjct: 87  MDQFAASVEPSEDELQQWYETRMTDYSEDARYSLRHRFFSSDRREDARGDAASALAGLAP 146

Query: 299 LAEEQGKSLSDI--------SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
              E   +L D                         DS+ +L + G ++  +  ++GY +
Sbjct: 147 ADPEADPALGDALAMPQRYEDTRETELASRFGQGFTDSLSALPE-GRWSGPVPSAYGYHL 205

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             + +++         V+  +    R     +  +E Y  L +
Sbjct: 206 VFIESVRARAQPPLGAVRAAVLRDWRAEHVEKAREELYASLLD 248


>gi|293377796|ref|ZP_06623984.1| PPIC-type PPIASE domain protein [Enterococcus faecium PC4.1]
 gi|292643577|gb|EFF61699.1| PPIC-type PPIASE domain protein [Enterococcus faecium PC4.1]
          Length = 245

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 14/155 (9%)

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY---KRISYILFDVHEKEKKIEISNDEL 253
           ++ + + +  D +   L   F+    +    E      I   L      +K I++++++L
Sbjct: 72  VSTKEIDSQYDQTKKQLGDSFDSQLKSAGYTEQTFKDSIKQSLAFQEGLKKHIKLTDEDL 131

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
           +  +E              + +   ++ +A +  ++  KG  F +LA+++    +    G
Sbjct: 132 KTAWESFHP------EVEAQIIQVASEDDAKDVKKAADKGDDFSKLAKDKSTDTTTKEDG 185

Query: 314 SFSK----EYIPDVSLADSIFSLAKKGDFTPVIHG 344
              K           + ++ F L K G  + VI  
Sbjct: 186 GKVKFDSTTTTVPAEVKEAAFKL-KDGQVSDVITS 219


>gi|2765458|emb|CAA75544.1| NifM protein [Pseudomonas aeruginosa PAO1]
          Length = 250

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 20/182 (10%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E   ++   PE  RI  +L    E+ +  E   D  +  Y  N  +   P    +  ++ 
Sbjct: 47  EARCEDGETPEEARIRQLL---EEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLL 103

Query: 278 P-----------NQKEADEAFQSLKKG-KKFIQLAEEQG---KSLSDISLGSFSKEYIPD 322
                        +K+A E    L+   ++F+ LA          S   LG         
Sbjct: 104 ACAPDDLEGRETARKQAAELLDELRGHPERFVDLARRFSACPSKESGGDLGWIEPGQTV- 162

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +   A  G     +   +G  +  +   +    + F   +  IA  ++      
Sbjct: 163 PEFEKRLLRRA-PGLLEHPLESRYGLHVVELLAREGGEPLDFDAARAQIAAHLQAQVLQR 221

Query: 383 KV 384
            V
Sbjct: 222 AV 223


>gi|294667019|ref|ZP_06732247.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292603236|gb|EFF46659.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 294

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 61/167 (36%), Gaps = 27/167 (16%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-----------------KEADEA 286
           +  +I   +++A+++ +   Y   +   +  L    +                   A   
Sbjct: 120 ESAQIDAAQIKAQFDAHPHDY---DEVHLSHLFVALKPQGAARRGTPLTDAQALARAQRL 176

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK---GDFTPVIH 343
            Q L+ G  F +LA  Q    S  + G      +   ++AD+  +  +    G  +  + 
Sbjct: 177 KQQLESGTPFAELAMRQSDDASTAAEGG-ELSPMFLRNVADAFVAPVQDLAVGQVSAPVR 235

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           G+ GY +  V   +P+   +    +  I  Q+R   A+  +++  + 
Sbjct: 236 GAEGYHLIRVDARRPA---TLDSARGQIEVQLRDQAAANALEQLRQA 279


>gi|255014825|ref|ZP_05286951.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_7]
          Length = 454

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 87/260 (33%), Gaps = 44/260 (16%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP----------SNAVLTQWFEKYKDNYRAPEY- 229
             ++ Y     +D I +N   V    D           S   L ++F K     +     
Sbjct: 69  AIQKLYLNQAKIDSITVNENQVIQSVDQWMNMAVNQIGSREKLEEYFGKKFSQIKDERKE 128

Query: 230 --KRISYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQ---KE 282
             +    +    H+   +I+++  E++  + +         P    V+ +    +   +E
Sbjct: 129 MVREQQVVQQMQHQLIGEIKLTPSEVRKYFSQLSQDSLPNIPTTVEVQIVTLEPKIPFEE 188

Query: 283 ADEAFQSLK-------KGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
            D     L+        GK +F  LA    E+ G +     LG  SK  +     A+  F
Sbjct: 189 TDAIKARLRDFTEQVNSGKMEFSTLARLYSEDPGSASRGGELGFMSKTQLL-PEFANVAF 247

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK-VKEDYK 389
           +L      + ++   +GY I  +   +            +  + +   K S+K + +   
Sbjct: 248 NLKDPKRVSQIVQTEYGYHIIQLIEKRGDRI--------NCRHILLKPKVSDKELADATT 299

Query: 390 RL----EEFLALGTSMDEIS 405
           RL     +  A   + +E +
Sbjct: 300 RLDSLYNDLQANKFTFEEAA 319


>gi|296125998|ref|YP_003633250.1| SurA domain protein [Brachyspira murdochii DSM 12563]
 gi|296017814|gb|ADG71051.1| SurA domain protein [Brachyspira murdochii DSM 12563]
          Length = 317

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 117/374 (31%), Gaps = 97/374 (25%)

Query: 31  SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
           S+ LF+   +S V  VG   + +  FI+  K  L + ++ IG  +N +          + 
Sbjct: 16  SNLLFNDVVNSIVGIVGSMPITYEDFISR-KSFLTLQAKSIGQKINDDM---------VY 65

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
            +LV    +   +++     +   V   +        K    + D F  +L  EGI+ +E
Sbjct: 66  KDLVEERIMYLKLKEYNYVIEENDVSRRLENI----AKQYNMTLDQFAKQLMAEGISYEE 121

Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
           Y +   K ++  ++ G+ V                                     + ++
Sbjct: 122 YRNSIRKQIAMENLNGLVVNNT----------------------------------EITD 147

Query: 211 AVLTQWFEKYKDN--YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
               +++   KD   +      ++S+I F      +K E                     
Sbjct: 148 EEADEFYNNTKDKSAFEVDTLVQLSWIFFKAATFTEKGE--------------------- 186

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGS---FSKEYIP 321
                      Q+ A +      +G+ F +LA +         +   LG    +      
Sbjct: 187 ----------KQELAKQVRGMAARGQDFAELARKYSDDNATKNNGGDLGYNLLYDAGKRS 236

Query: 322 DVSLADSIFSLA----KKGDFTPVIH-GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +  ++  +LA    K G  + V      G+ I  +  I+       + ++  + N + 
Sbjct: 237 LPAQINAGLNLAKRGYKVGTVSSVRELVGKGFYIVKIVGIE----KDMESIRTRVKNYLG 292

Query: 377 ITKASEKVKEDYKR 390
             +  +   +    
Sbjct: 293 EMQMRDSFVKWLDE 306


>gi|150008994|ref|YP_001303737.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides distasonis
           ATCC 8503]
 gi|298375774|ref|ZP_06985730.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           3_1_19]
 gi|301312044|ref|ZP_07217966.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           20_3]
 gi|149937418|gb|ABR44115.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides distasonis
           ATCC 8503]
 gi|298266811|gb|EFI08468.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           3_1_19]
 gi|300830146|gb|EFK60794.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           20_3]
          Length = 454

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 87/260 (33%), Gaps = 44/260 (16%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP----------SNAVLTQWFEKYKDNYRAPEY- 229
             ++ Y     +D I +N   V    D           S   L ++F K     +     
Sbjct: 69  AIQKLYLNQAKIDSITVNENQVIQSVDQWMNMAVNQIGSREKLEEYFGKKFSQIKDERKE 128

Query: 230 --KRISYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQ---KE 282
             +    +    H+   +I+++  E++  + +         P    V+ +    +   +E
Sbjct: 129 MVREQQVVQQMQHQLIGEIKLTPSEVRKYFSQLSQDSLPNIPTTVEVQIVTLEPKIPFEE 188

Query: 283 ADEAFQSLK-------KGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
            D     L+        GK +F  LA    E+ G +     LG  SK  +     A+  F
Sbjct: 189 TDAIKARLRDFTEQVNSGKMEFSTLARLYSEDPGSASRGGELGFMSKTQLL-PEFANVAF 247

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK-VKEDYK 389
           +L      + ++   +GY I  +   +            +  + +   K S+K + +   
Sbjct: 248 NLKDPKRVSQIVQTEYGYHIIQLIEKRGDRI--------NCRHILLKPKVSDKELADATT 299

Query: 390 RL----EEFLALGTSMDEIS 405
           RL     +  A   + +E +
Sbjct: 300 RLDSLYNDLQANKFTFEEAA 319


>gi|289626311|ref|ZP_06459265.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289650291|ref|ZP_06481634.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330866996|gb|EGH01705.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 91

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++    +EA++    + KG+ F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKTAEEAEQLKLRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVG-AIDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHV 353
            IF    +      I   FGY +  V
Sbjct: 63  VIFKKPLR-MVHGPIKSKFGYHLVQV 87


>gi|315173979|gb|EFU17996.1| putative foldase protein PrsA [Enterococcus faecalis TX1346]
          Length = 362

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 83/262 (31%), Gaps = 30/262 (11%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIVLNNRHVPA 204
           I   ++ +   +  +        V          D+      + +       +  +    
Sbjct: 56  ITVDDFYNQIKEQSTSQQAFSQMVIYKVFEEKYGDKVTDKAIQKKFDDAKKQVEAQGGKF 115

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
               + A LT+  + +K   +  E  ++          +  ++I++++L+  +       
Sbjct: 116 SDALTQAGLTE--KSFKKQLKQAEAMQV--------GLKDHLKITDEDLKTAWASFHP-- 163

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYI 320
                   + +   ++ +A    + +  G  F ++A+++    +    G      S+   
Sbjct: 164 ----EVEAQIIQVASEDDAKAVKKEITDGGDFAKIAKDKSTDAATKKDGGKIKFDSQSTT 219

Query: 321 PDVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDIA 372
               + ++ F L K G+ +              Y +  ++  K        +++  K IA
Sbjct: 220 VPAEVKEAAFKL-KDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIA 278

Query: 373 NQMRITKASEKVKEDYKRLEEF 394
              ++   + + K     L+  
Sbjct: 279 EDTKLADQTFQAKVISDELKAA 300


>gi|325203459|gb|ADY98912.1| conserved hypothetical protein [Neisseria meningitidis M01-240355]
          Length = 185

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 69/183 (37%), Gaps = 20/183 (10%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           +  +   F+  + ++ A EY R           E+   +S   L+  YE+          
Sbjct: 16  DKDVQNRFKIAEASFYAEEYVRF---------LERSETVSESALRQFYERQIRMI----- 61

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI 329
             ++Q+ F  ++EA +A Q L KG  F  L +              +++ +  ++     
Sbjct: 62  -KLQQVSFATEEEARQAQQLLLKGLSFEGLMKRYPNDEQAFDGFIMAQQLLEPLASQ--- 117

Query: 330 FSLAKKGDFT-PVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           F+   +GD T   +     Y +  +S + K      F+ V+  +   +R  KA  K+   
Sbjct: 118 FAAMNRGDVTRDPVKLGERYYLFKLSEVGKNPDAQPFELVRNQLEQGLRQEKARLKIDAI 177

Query: 388 YKR 390
            + 
Sbjct: 178 LEE 180


>gi|227551579|ref|ZP_03981628.1| peptidylprolyl isomerase [Enterococcus faecium TX1330]
 gi|257887322|ref|ZP_05666975.1| rotamase [Enterococcus faecium 1,141,733]
 gi|257895813|ref|ZP_05675466.1| rotamase [Enterococcus faecium Com12]
 gi|293377562|ref|ZP_06623754.1| protease maturation family protein [Enterococcus faecium PC4.1]
 gi|293572937|ref|ZP_06683884.1| foldase protein PrsA [Enterococcus faecium E980]
 gi|227179256|gb|EEI60228.1| peptidylprolyl isomerase [Enterococcus faecium TX1330]
 gi|257823376|gb|EEV50308.1| rotamase [Enterococcus faecium 1,141,733]
 gi|257832378|gb|EEV58799.1| rotamase [Enterococcus faecium Com12]
 gi|291606978|gb|EFF36353.1| foldase protein PrsA [Enterococcus faecium E980]
 gi|292643819|gb|EFF61937.1| protease maturation family protein [Enterococcus faecium PC4.1]
          Length = 295

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 77/237 (32%), Gaps = 32/237 (13%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK--------YK 221
           G +   +   +   +   +      IV          + S+  +T+ + +        YK
Sbjct: 38  GTLTVQDFYDNPKVKSNNQTLLRKMIVFKAFDDVYGKEISSKEITKEYNEQIKKLGPNYK 97

Query: 222 DNYRAPEYKRISYILFDVHEKE------KKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +  +A      +Y                 +++++ +L   +++   +  +      + +
Sbjct: 98  EQLKAVGQTEETYKKLLKQMLAFQYGLKANVKLTDKDLDTAWKEFHPEVST------QII 151

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFS 331
            F  ++EAD A + + +G+ F +L +  GK      +D  +   S        +  + F 
Sbjct: 152 PFSTKEEADNAKKEVNEGENFSKLVQAYGKNKTLKETDGKMNFDSTNPGIPTEVKKAAFQ 211

Query: 332 LAKKGDFT------PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           L   G+ +              Y +  +   +        + K ++      TK  +
Sbjct: 212 L-NNGEVSDIIPVTDPTTYQQSYYLVKMVKKQDKGANK-DKYKSELEKIATETKTLD 266


>gi|227511814|ref|ZP_03941863.1| peptidylprolyl isomerase [Lactobacillus buchneri ATCC 11577]
 gi|227084904|gb|EEI20216.1| peptidylprolyl isomerase [Lactobacillus buchneri ATCC 11577]
          Length = 295

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 15/160 (9%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            + +   L      +   + +   L+ +++  + K       TV Q++   +  A +   
Sbjct: 106 KRNLKEDLLLKAAIKANTKFTPGMLKQQFKHYQPK------VTVNQILVSKKATAQKVID 159

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTP-VI 342
            L  G  F +LA       +            +     D +   + F L K G +T   +
Sbjct: 160 QLNAGHSFAKLATAYSTDAATKKKSGRISPFDNTNTTLDPNFKKAAFKL-KTGQYTKTPV 218

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
              +GY +  + N     T   Q  K+ + NQ+  TKA++
Sbjct: 219 KTQYGYEVIQMVNHPAKGTH--QNHKEALKNQIVDTKAAD 256


>gi|259503634|ref|ZP_05746536.1| foldase PrsA1 [Lactobacillus antri DSM 16041]
 gi|259168408|gb|EEW52903.1| foldase PrsA1 [Lactobacillus antri DSM 16041]
          Length = 318

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 62/193 (32%), Gaps = 31/193 (16%)

Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKR--ISYILFDVHEKEKKIEISNDE 252
             S+  +   +  YK  Y               +  +  +   L           I+N  
Sbjct: 70  QVSDKQVNAQYNSYKSQYGSQFSSFLQQNGMTEKSFKQQLRSNLLLEAAVRDYSHITNKR 129

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK----FIQLAEEQGKSLS 308
           + A+++K + K  + E      ++  ++ +A +    L         F +LA+ +    S
Sbjct: 130 INAQWKKYQPKVQTAE------ILVGSKNDAQDIIDQLNSSSDKYKTFKKLAKSKSTDSS 183

Query: 309 DISLGSFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
           + + G     +       D +  ++ F L      T  +    GY + ++         S
Sbjct: 184 NKNNGGRVPAFDNTDNSLDSAYKEAAFKLKTGEYTTTPVKTDDGYQVIYMIEHPAKGKKS 243

Query: 364 --FQEVKKDIANQ 374
               +++  I  +
Sbjct: 244 QHIADLRTQIVQE 256



 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 87/262 (33%), Gaps = 48/262 (18%)

Query: 8   ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
            S+  +A I    L +P              G+  V +    K+  S + +S K      
Sbjct: 2   KSKKLIAVIAGAALMLPLA----------ACGNKAVATTSGGKITQSEYYSSMKATSN-- 49

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
                              K++L  ++    L+   ++ G +    +V    A+   +  
Sbjct: 50  ------------------GKQVLQQMILDKVLE---KEYGKQVSDKQVN---AQYNSYKS 85

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD-QAKRFY 186
           +        F S L + G+ EK +       L    +          +N  ++ Q K++ 
Sbjct: 86  QYGS----QFSSFLQQNGMTEKSFKQQLRSNLL---LEAAVRDYSHITNKRINAQWKKYQ 138

Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
            + ++ + +V +      I D     L    +KYK   +  + K       +   +    
Sbjct: 139 PKVQTAEILVGSKNDAQDIID----QLNSSSDKYKTFKKLAKSKSTDSSNKNNGGRVPAF 194

Query: 247 EISNDELQAEYEKNKEKYFSPE 268
           + +++ L + Y++   K  + E
Sbjct: 195 DNTDNSLDSAYKEAAFKLKTGE 216


>gi|254883666|ref|ZP_05256376.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase
           [Bacteroides sp. 4_3_47FAA]
 gi|254836459|gb|EET16768.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase
           [Bacteroides sp. 4_3_47FAA]
          Length = 344

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 67/211 (31%), Gaps = 28/211 (13%)

Query: 211 AVLTQWFEKYKDNYR---APEYKRISYILFDVHEKEKKIEISNDELQAEYEK--NKEKYF 265
             + +++ K     R       +    +     +    I+I+  E++  ++        F
Sbjct: 1   EKVEEYYNKTSTQIREMLRENIRDGKTVQKMQQQIVGDIKITPAEVRRYFKDLPQDSIPF 60

Query: 266 SPEIRTVEQLVFPNQKEADEAF----------QSLKKGK-KFIQLA----EEQGKSLSDI 310
            P    V+ +    +   +E            + +  G+  F  LA    E++G      
Sbjct: 61  IPTQVEVQIITMEPKIPQEEIERVKKTLRDYTERVTSGEIAFSTLARLYSEDEGSRRRGG 120

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-------VS 363
            LG   +  +     A+  F+L      + ++   FG+ I  +   +             
Sbjct: 121 ELGFMGRAELV-PEYANVAFNLQDPNKVSKIVESEFGFHIIQLIEKRGDRINTRHILLKP 179

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
             + K   A  +R+   +  ++ +    ++ 
Sbjct: 180 KVDEKDLEAALLRLDSIANDIRNEKFTFDDA 210


>gi|307289621|ref|ZP_07569565.1| putative foldase protein PrsA [Enterococcus faecalis TX0109]
 gi|306499435|gb|EFM68808.1| putative foldase protein PrsA [Enterococcus faecalis TX0109]
 gi|315164537|gb|EFU08554.1| putative foldase protein PrsA [Enterococcus faecalis TX1302]
          Length = 362

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 84/262 (32%), Gaps = 30/262 (11%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV-LNNRHVPA 204
           I   ++ +   +  +        V          D+      + +  D    +  +    
Sbjct: 56  ITVDDFYNQIKEQSTSQQAFSQMVIYKVFEEKYGDKVTDKAIQKKFDDAKKQVEAQGGKF 115

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
               + A LT+  + +K   +  E  ++          +  ++I++++L+  +       
Sbjct: 116 SDALTQAGLTE--KSFKKQLKQAEAMQV--------GLKDHLKITDEDLKTAWASFHP-- 163

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYI 320
                   + +   ++ +A    + +  G  F ++A+++    +    G      S+   
Sbjct: 164 ----EVEAQIIQVASEDDAKAVKKEITDGGDFAKIAKDKSTDAATKKDGGKIKFDSQSTT 219

Query: 321 PDVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDIA 372
               + ++ F L K G+ +              Y +  ++  K        +++  K IA
Sbjct: 220 VPAEVKEAAFKL-KDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIA 278

Query: 373 NQMRITKASEKVKEDYKRLEEF 394
              ++   + + K     L+  
Sbjct: 279 EDTKLADQTFQAKVISDELKAA 300


>gi|256841005|ref|ZP_05546512.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides sp. D13]
 gi|256736848|gb|EEU50175.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides sp. D13]
          Length = 454

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 87/260 (33%), Gaps = 44/260 (16%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP----------SNAVLTQWFEKYKDNYRAPEY- 229
             ++ Y     +D I +N   V    D           S   L ++F K     +     
Sbjct: 69  AIQKLYLNQAKIDSITVNENQVIQSVDQWMNMAVNQIGSREKLEEYFGKKFSQIKDERKE 128

Query: 230 --KRISYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQ---KE 282
             +    +    H+   +I+++  E++  + +         P    V+ +    +   +E
Sbjct: 129 MVREQQVVQQMQHQLIGEIKLTPSEVRKYFSQLSQDSLPNIPTTVEVQIVTLEPKIPFEE 188

Query: 283 ADEAFQSLK-------KGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
            D     L+        GK +F  LA    E+ G +     LG  SK  +     A+  F
Sbjct: 189 TDAIKARLRDFTEQVNSGKMEFSTLARLYSEDPGSASRGGELGFMSKTQLL-PEFANVAF 247

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK-VKEDYK 389
           +L      + ++   +GY I  +   +            +  + +   K S+K + +   
Sbjct: 248 NLKDPKRVSQIVQTEYGYHIIQLIEKRGDRI--------NCRHILLKPKVSDKELADATT 299

Query: 390 RL----EEFLALGTSMDEIS 405
           RL     +  A   + +E +
Sbjct: 300 RLDSLYNDLQANKFTFEEAA 319


>gi|111114862|ref|YP_709480.1| hypothetical protein BAPKO_0039 [Borrelia afzelii PKo]
 gi|110890136|gb|ABH01304.1| hypothetical protein BAPKO_0039 [Borrelia afzelii PKo]
          Length = 500

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 128/453 (28%), Gaps = 118/453 (26%)

Query: 1   MLEIIRKASRTWV----------AKIFLVVLFVPFLIW------GLSDALFSVSGSSTVV 44
           ML+  RK     V                ++ + F         G+ D   S       +
Sbjct: 1   MLKRSRKVKNDLVTLESKEKKVGMWGIFTLILIVFGFIIAPLLPGIFDNAHSSG-----L 55

Query: 45  SVG---RQKV------PFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
             G    Q +       F+ ++N +      +    G   N     +           V 
Sbjct: 56  KFGSYKGQPIYYKKDNKFAKYVNYYSNLYSRLQ---GNAKNINVDYNAWY--LAFMKYVE 110

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
                  I+          +   + RSP +   +  FS   +          + +  D  
Sbjct: 111 DVAFFDLIKKYNFYISKEMLNKNLLRSPEYLDPNGNFSSKRYNKV---SDYQKVKIYDDM 167

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            + +  ++V       +  S  L +  K      R + Y+ L+ +        SN  +  
Sbjct: 168 VENILFSNVKIFLNSNLIFSESLFNMIKDMSAVERHISYLSLSYQDF------SNKEVIL 221

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           + EK  + ++                                             ++  +
Sbjct: 222 YAEKNLNLFK-------------------------------------------RLSLASI 238

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-------------DISLGSFSKEYIPD 322
            F N  +A  A+  L     F +LA+     ++             D+ L   +KE +  
Sbjct: 239 RFKNASDARSAYDKLLNKTPFEELAKLYSDDMANFKGVVSLDKYYFDLDLNVENKEDL-- 296

Query: 323 VSLADSIFSLAKKGDFTPVIHG--SFGYVIAH----VSNIKPSFTVSFQEVKKDIANQMR 376
               +SIFSL K+G+F+  I       Y I      + +   +       VK  I     
Sbjct: 297 ----NSIFSL-KEGEFSKPIKTKNKNEYQIYKAFSNIYDFDKNSDRDISAVKNYIETY-- 349

Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
                E   E   +L +FL+    +  +S+  K
Sbjct: 350 EPSVIEAYLE--NKLNDFLSDVK-LSSLSQALK 379


>gi|313885841|ref|ZP_07819584.1| PPIC-type PPIASE domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924745|gb|EFR35511.1| PPIC-type PPIASE domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 472

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 104/318 (32%), Gaps = 51/318 (16%)

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI----NEKEYIDHYTKMLSRTDVV--G 166
             V   +   P+   +    +  ++   +  +G+    N   Y    T+ L+   +    
Sbjct: 44  DEVIWTVGDEPILKSE--IENQKLY---MRSQGMPLEGNPDCY---LTEQLAVQMLFLNQ 95

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
             +  +   N  +D+    + E+                   S   L ++F +   + R 
Sbjct: 96  AKIDSISVDNTKVDRFVDNFMESLVQQIG-------------SRERLEEYFNRPYSSIRE 142

Query: 227 PEYKRI---SYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQ- 280
            +         +     +  + + ++  E+++ Y +       + P++  V+ L      
Sbjct: 143 QQRIMAVNNEIVRQMQQKIIQGVAVTPTEIRSYYAQIPQDSLPYIPDVVEVQVLRITPDI 202

Query: 281 --KEADEAFQSL--------KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLA 326
                D+  + L           + F  +A    +     L     G  ++  + +   A
Sbjct: 203 ELAAIDQIKEQLRSYSDDIVAGRRDFSTIARLYSQDSRTSLRGGEYGFVARSSL-EPEFA 261

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
             +F+L+     +P+I  + GY I  +   +   T++F+ +   +   +   K  + V +
Sbjct: 262 QVVFALSDTKQVSPIIRTATGYHIVQLIEKR-DNTINFRHI--LLKPSVAPDKLQQAVNK 318

Query: 387 DYKRLEEFLALGTSMDEI 404
                 +     TS DE 
Sbjct: 319 ADSVAVQVRNGKTSFDEA 336


>gi|332375258|gb|AEE62770.1| unknown [Dendroctonus ponderosae]
          Length = 159

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 273 EQLVFPNQKEADEA----FQSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
           E+++  +++EA E      + + +GK  F +LA +      +     LG F K  +    
Sbjct: 71  EEVITRSKEEALELVKMYREQIAQGKASFAELATKYSDCSSAKRGGDLGPFGKGAMQKP- 129

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIA 351
             DS FSL K G+ +  +    G  I 
Sbjct: 130 FEDSAFSL-KVGELSDPVFTDSGVHII 155


>gi|288800857|ref|ZP_06406314.1| putative PPIC-type PPIASE domain protein [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288332318|gb|EFC70799.1| putative PPIC-type PPIASE domain protein [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 461

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 118/358 (32%), Gaps = 49/358 (13%)

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLA 333
             + + +  +  +K G+ F +LA+   ++     +   L   +K         +  F+L+
Sbjct: 137 NAKDQIEAIYNKVKAGEDFGKLAQLYTQNTLYRATKGELPWLAKGQTL-SEFENVAFALS 195

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             G+ +       GY + ++   K    +S+ EV+ +I + +   K  + +      ++ 
Sbjct: 196 -PGEVSKPFMSVDGYHLLYLQ--KKVDFLSYNEVRANIIDFILKEKVRKGI-----DIQH 247

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
             A G               + P +       +    +++      L      ++ L   
Sbjct: 248 VFASGE------------MGNTPSLTTISTTDEAFNTSSVASISNTLDAQSSSNEQLLTY 295

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE---VSSKANQLVLEY 510
               L +G          + A  R LE      KK ++  +   +   + +K+ +L+ E 
Sbjct: 296 LNNNLWNG----------VEADSRALERYFEANKKKYRFDEPRFKGYVLYAKSAELLKEL 345

Query: 511 SKEGKNFRDI----GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
            K+ K+   +         A   +       +          + + F       K     
Sbjct: 346 EKKAKHAPLLNLNKAAIEDAVGGSRESFKIDEGIFSLGENTVVDKEF------YKQHNTN 399

Query: 567 NGLSYVVF-KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
           +G S   F K+   KV     K +    +     + L    +A LK  +S+ ++   +
Sbjct: 400 SGASEFPFTKIVGKKVKQPDLKSEVTWQVLADYKEYLEQQWLAKLKKSHSIVINKKEL 457


>gi|207738621|ref|YP_002257014.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum IPO1609]
 gi|206591989|emb|CAQ58895.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum IPO1609]
          Length = 268

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 70/236 (29%), Gaps = 25/236 (10%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
            +++  +          +N    Q  +   +      +           +   AV     
Sbjct: 30  QVTQAQLDRAIAQSGAQAN---PQIAQALKQQLIARELFRQQAAKNPAYEKLPAVKQAMQ 86

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E +                  + +  K   I++++++A Y+         E +    +  
Sbjct: 87  EAH----------DAVITQAWLKDNIKPAPITDEQVKARYDAIVASLGDKEYK-ARVIQL 135

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLA 326
            +   A +  + LK+G  F +LA++   + + +  G              K     + LA
Sbjct: 136 GDDVTAAQVLELLKQGGDFAKLAQQYSTAPNKVRGGDMDWVSFKVPAEEGKTQNLPLPLA 195

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             I +L      T  +       I  V   +P+   ++  VK  I   +   +   
Sbjct: 196 REIAALGIGATSTAPVEVGSQRYIVKVEAARPTQVPAYDTVKPAIRQALESAELER 251


>gi|170682547|ref|YP_001746096.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli SMS-3-5]
 gi|170769831|ref|ZP_02904284.1| peptidyl-prolyl cis-trans isomerase C [Escherichia albertii
           TW07627]
 gi|218701311|ref|YP_002408940.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli IAI39]
 gi|300818755|ref|ZP_07098962.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
 gi|300940009|ref|ZP_07154634.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
 gi|331665422|ref|ZP_08366321.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA143]
 gi|331675247|ref|ZP_08375998.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA280]
 gi|170121269|gb|EDS90200.1| peptidyl-prolyl cis-trans isomerase C [Escherichia albertii
           TW07627]
 gi|170520265|gb|ACB18443.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli SMS-3-5]
 gi|218371297|emb|CAR19130.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli IAI39]
 gi|300455142|gb|EFK18635.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
 gi|300528721|gb|EFK49783.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
 gi|323964024|gb|EGB59514.1| ppic-type ppiase domain-containing protein [Escherichia coli M863]
 gi|327250628|gb|EGE62334.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli STEC_7v]
 gi|331057320|gb|EGI29309.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA143]
 gi|331067533|gb|EGI38937.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA280]
          Length = 93

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A E  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALELLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 68  SCPVL-EPTGPLHTQFGYHIIKV 89


>gi|56707610|ref|YP_169506.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670081|ref|YP_666638.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. tularensis FSC198]
 gi|254370127|ref|ZP_04986133.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874430|ref|ZP_05247140.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604102|emb|CAG45101.1| Peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320414|emb|CAL08484.1| Peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568371|gb|EDN34025.1| hypothetical protein FTBG_01231 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840429|gb|EET18865.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 473

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/306 (10%), Positives = 84/306 (27%), Gaps = 74/306 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           + TV  V  + +          + L  +     F  +        L ++ L +L+S + L
Sbjct: 58  NKTVAIVNSRPITSFELDQELAK-LEAMQPNSAFNTDP-------LKRQALQDLISQSVL 109

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E   +   + ++   I          N  S +     +   G++   Y       L
Sbjct: 110 LQLAERNNIMISNQQLDSAIQDIAA----KNGVSVESLKLNVEAAGMSFDSYKKRIRDQL 165

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             + +                                   + +      S   + ++ +K
Sbjct: 166 MISQLQ---------------------------------QQAIAQQVYVSPEEIQKYIKK 192

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           ++  +         Y L       K + ++  + +   +K  + +               
Sbjct: 193 HQKEFDREMSPVKLYTL-------KNLIVALPDSKKARQKKIDLF--------------- 230

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKG 336
                +   ++  G   F ++ ++  ++ + +S G  S++   D    +        K  
Sbjct: 231 ----KKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKNH 286

Query: 337 DFTPVI 342
             +   
Sbjct: 287 QVSQPF 292


>gi|296386502|ref|ZP_06876001.1| hypothetical protein PaerPAb_00150 [Pseudomonas aeruginosa PAb1]
          Length = 375

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           ++S+ + +A Y +N E+Y +        +   +Q  AD+ +  L+ G  F +       +
Sbjct: 217 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRGGLAFDEAVRRYSLA 276

Query: 307 -----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
                     LG    +      L  +   + K    +  +     + I  V + +    
Sbjct: 277 DDRDRDPPGDLGLIRPQDGRLDLLRKTAL-IQKADTVSQPMRIDGAFEIVRVRS-REDRQ 334

Query: 362 VSFQE--VKKDIANQMRITKASEKVKEDYKRL 391
           +   +  V+ ++   +   + + + +   + L
Sbjct: 335 LPLDDRSVRFEVNQAVAREQLAAQFETRLRNL 366


>gi|212527902|ref|XP_002144108.1| peptidyl-prolyl cis-trans isomerase [Penicillium marneffei ATCC
           18224]
 gi|210073506|gb|EEA27593.1| peptidyl-prolyl cis-trans isomerase [Penicillium marneffei ATCC
           18224]
          Length = 129

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF  +A E  +  +    SLG   +  +         
Sbjct: 40  VRHILCEKHSKKEEALEKLRNGAKFDDVAREFSEDKARQGGSLGWKVRGSLHG-DFEKVA 98

Query: 330 FSLAKKGDFTPVI---HGSFGYVIAHVSNIK 357
           + L      +P        FGY I  V   K
Sbjct: 99  YELEPSTTASPKYAEVKTGFGYHIIMVEGRK 129


>gi|224534873|ref|ZP_03675442.1| conserved hypothetical protein [Borrelia spielmanii A14S]
 gi|224513813|gb|EEF84138.1| conserved hypothetical protein [Borrelia spielmanii A14S]
          Length = 500

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 107/362 (29%), Gaps = 95/362 (26%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKV------PFSSFINSWK 61
                  L+++   F+I  L   +F  + SS +   G    Q +       F+ ++N + 
Sbjct: 23  GMWGIFALILIVFGFIIAPLLPGMFDNAHSSGL-KFGSYKGQPIYYEKDNKFAKYVNYYS 81

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKI--LDNL--VSGATLDQFIEDIGLEADHGRVWG 117
                +            A+++ +D     L  +  V        I+          +  
Sbjct: 82  NLYSRLQGN---------AKNINIDYNAWYLAFMKYVEDVAFLDLIKKYNFYISKEMLDK 132

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            + RSP +   +  FS   +          + +  D   + +  +++       +   + 
Sbjct: 133 NLLRSPEYLDPNGNFSSKRYNKV---SDYRKVKIYDDMVESILFSNIKTFLNSNLIFPDS 189

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L +  K      R + Y+ L+  +       SN     + EK  + ++      I +   
Sbjct: 190 LFNMIKDMSTVERHISYLSLSYHNF------SNKEAMSYAEKNLNLFKRLSLASIRFKNM 243

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
                                                       +A  A+  L     F 
Sbjct: 244 S-------------------------------------------DARNAYDKLLNKTPFE 260

Query: 298 QLAEEQGKSLS-------------DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           +LA+     ++             D+ L   +KE +      +SIFSL K+G+F+  I  
Sbjct: 261 ELAKLYSDDMANFKGVVSLDKYYFDLDLNVENKEDL------NSIFSL-KEGEFSKPIKT 313

Query: 345 SF 346
             
Sbjct: 314 KN 315


>gi|221046455|pdb|2JZV|A Chain A, Solution Structure Of S. Aureus Prsa-Ppiase
          Length = 111

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 22/108 (20%)

Query: 268 EIRTVEQLVFP-----------NQKEADEAFQSLKK-----GKKFIQLAEEQ----GKSL 307
           + +    ++             + KEA +  + ++K       KF ++A+++    G + 
Sbjct: 6   DSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAK 65

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
            D  LG   K    D     ++F L K G+ + V+  SFGY I     
Sbjct: 66  KDGELGYVLKGQT-DKDFEKALFKL-KDGEVSEVVKSSFGYHIIKADK 111


>gi|326431789|gb|EGD77359.1| parvulin-type peptidyl-prolyl cis-trans isomerase [Salpingoeca sp.
           ATCC 50818]
          Length = 149

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 22/108 (20%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG-------------KKFIQLAEEQGKSL--SDISLGSF 315
            V  ++     +A +A + L++                +I++A E  +    S  +LG  
Sbjct: 43  EVRHILCEKHSKAMQALEQLRQAYKPADGGKPQTGYSTWIKVASEFSEDKAKSGGNLGWM 102

Query: 316 SKEYIPDVSLADSIFSL---AKKGDFT---PVIHGSFGYVIAHVSNIK 357
           ++  +      D+ F+L      G      P +   FGY I  V+N K
Sbjct: 103 ARGSMVGP-FQDAAFALEVSKPNGPVIFTDPPVKTKFGYHIIMVTNKK 149


>gi|216263853|ref|ZP_03435847.1| conserved hypothetical protein [Borrelia afzelii ACA-1]
 gi|215979897|gb|EEC20719.1| conserved hypothetical protein [Borrelia afzelii ACA-1]
          Length = 500

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/384 (14%), Positives = 108/384 (28%), Gaps = 107/384 (27%)

Query: 1   MLEIIRKASRTWV----------AKIFLVVLFVPFLIW------GLSDALFSVSGSSTVV 44
           ML+  RK     V                ++ + F         G+ D   S       +
Sbjct: 1   MLKRSRKVKNDLVTLESKEKKVGIWGIFALILIVFGFIIAPLLPGIFDNAHSSG-----L 55

Query: 45  SVG---RQKV------PFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
             G    Q +       F+ ++N +      +    G V N     +           V 
Sbjct: 56  KFGSYKGQPIYYKKDNKFAKYVNYYSNLYSRLQ---GNVKNINVDYNAWY--LAFMKYVE 110

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
                  I+          +   + RSP +   +  FS   +          + +  D  
Sbjct: 111 DVAFFDLIKKYNFYISKEMLNKNLLRSPEYLDPNGNFSSKRYNKV---SDYQKVKIYDDM 167

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            + +  ++V       +  S  L +  K      R + Y+ L+ +        SN  +  
Sbjct: 168 VENILFSNVKIFLNSNLIFSESLFNMIKDMSAVERHISYLSLSYQDF------SNKEVIL 221

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           + EK  + ++                                             ++  +
Sbjct: 222 YAEKNLNLFK-------------------------------------------RLSLASI 238

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-------------DISLGSFSKEYIPD 322
            F N  +A  A+  L     F +LA+     ++             D+ L   +KE +  
Sbjct: 239 RFKNVSDARSAYDKLLNKTPFEELAKLYSDDMANFKGVVSLDKYYFDLDLNVENKEDL-- 296

Query: 323 VSLADSIFSLAKKGDFTPVIHGSF 346
               +SIFSL K+G+F+  I    
Sbjct: 297 ----NSIFSL-KEGEFSKPIKTKN 315


>gi|237831619|ref|XP_002365107.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, putative
           [Toxoplasma gondii ME49]
 gi|211962771|gb|EEA97966.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, putative
           [Toxoplasma gondii ME49]
 gi|221487040|gb|EEE25286.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative
           [Toxoplasma gondii GT1]
 gi|221506728|gb|EEE32345.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative
           [Toxoplasma gondii VEG]
          Length = 116

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQ---GKSLSDISLGSFSKE 318
            +P  R   Q V  ++ +A +    LK     + F QLA +    G       LG F++ 
Sbjct: 22  RNPVSRRTNQPVTKSKDQAWDELSVLKSSVRQENFAQLANQYSDCGSFQKGGDLGFFTRG 81

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            +      D+ F+L + G+ + +I    G  + +
Sbjct: 82  -MMQKPFEDASFAL-QVGEISDIIDTDSGLHLIY 113


>gi|311032419|ref|ZP_07710509.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus sp. m3-13]
          Length = 207

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 50/117 (42%), Gaps = 21/117 (17%)

Query: 202 VPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKR--ISYILFDVHEKEKKI 246
           +    + ++  + +  ++ K               ++  E     +   +       + +
Sbjct: 66  LSEKYEVTDEEVQERLDELKQQLGPQFDSAMAQSGFKTEEQLSQTLRISMLQEKAAMESV 125

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           E++++E+Q  Y++ K     PEIR    ++  +++ A+E  + L +G  F +LA +Q
Sbjct: 126 EVTDEEIQKYYDEMK-----PEIR-ASHILVADEETANEVKKKLDEGADFAELATQQ 176


>gi|284923881|emb|CBG36980.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 042]
          Length = 93

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330
            ++   +K A E  + +K G  F +LA++     S      LG F +  +   +    +F
Sbjct: 9   HILVKEEKLALELLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67

Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353
           S     + T  +H  FGY I  V
Sbjct: 68  SCPVL-EPTGPLHTQFGYHIIKV 89


>gi|187251883|ref|YP_001876365.1| hypothetical protein Emin_1480 [Elusimicrobium minutum Pei191]
 gi|186972043|gb|ACC99028.1| hypothetical protein Emin_1480 [Elusimicrobium minutum Pei191]
          Length = 286

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 97/266 (36%), Gaps = 32/266 (12%)

Query: 139 SRLAREG---INEKEYIDHYTKM-LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           + LA  G   I +K++ +      L+R  +   F      + L+ +Q      +  S+  
Sbjct: 31  NALANVGGVFITQKDFDNAVIDETLNRKYLETSFGKNALINALVREQLI----QQASLKS 86

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
               +              ++  E+ K           + I  D    + +I ++ DE++
Sbjct: 87  GSAQSEEFIKTITDIQNDFSKRLEETKKE-------VATKIWIDSLRNKGEISVTEDEIK 139

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------GKKFIQLAEEQGKSLS 308
             ++K   +        + Q++  +   A+   + LK        K+FI+LA+     L 
Sbjct: 140 DYHKKYSYEMT------IRQMLLTDPDTANLVLRELKATNNSNREKRFIELAKRYSIDLD 193

Query: 309 DISLGSFSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
           D+S       ++P   L   ++  + +  G        S G+ I + +  K    ++ ++
Sbjct: 194 DVSTDGKQFTFMPGEFLPEIENASANSSSGLVQGFFKTSRGFHIIYKAGEKK---ITLKD 250

Query: 367 VKKDIANQMRITKASEKVKEDYKRLE 392
            +  I N +   K  + ++    + +
Sbjct: 251 ARDRIKNILEKKKFDDYLESLAVKYK 276



 Score = 40.4 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 25/183 (13%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ + +VG   +    F N+           I   +N +   +      +++ LV    +
Sbjct: 30  SNALANVGGVFITQKDFDNAV----------IDETLNRKYLETSFGKNALINALVREQLI 79

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR--------LAREG---INE 148
            Q     G           I          +K   +             L  +G   + E
Sbjct: 80  QQASLKSGSAQSEE----FIKTITDIQNDFSKRLEETKKEVATKIWIDSLRNKGEISVTE 135

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
            E  D++ K      +  M +     +NL+L + K     NR   +I L  R+   + D 
Sbjct: 136 DEIKDYHKKYSYEMTIRQMLLTDPDTANLVLRELKATNNSNREKRFIELAKRYSIDLDDV 195

Query: 209 SNA 211
           S  
Sbjct: 196 STD 198


>gi|240017347|ref|ZP_04723887.1| hypothetical protein NgonFA_09336 [Neisseria gonorrhoeae FA6140]
          Length = 252

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 81/235 (34%), Gaps = 21/235 (8%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
                 ++         S     QA R     R     VL NR +    D  +  +   F
Sbjct: 32  DTLVAQIMQQADRHAEQSQRPDGQAIRNDAVRRLQTLEVLKNRALKEGLD-KDEDVQNRF 90

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +  + ++ A EY R           E+   +S   L+  YE+            ++Q+ F
Sbjct: 91  KIAEASFYAEEYVRF---------LERSETVSESALRQFYERQIRMI------KLQQVSF 135

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
             ++EA +A Q L KG  F  L +           G    + +P+   +   F+   +GD
Sbjct: 136 ATEEEARQAQQLLLKGLSFEGLMKRYPNDEQAFD-GFIMAQQLPEPLASQ--FAGMNRGD 192

Query: 338 FT-PVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            T   +     Y +  +  + K      F+ V+  +   +R  KA  K+    + 
Sbjct: 193 VTRNPVKLGERYYLFKLGAVGKNPDAQPFELVRNQLEQGLRQEKARLKIDAVLEE 247


>gi|53715356|ref|YP_101348.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
 gi|60683325|ref|YP_213469.1| putative exported peptidyl-prolyl cis-trans isomerase [Bacteroides
           fragilis NCTC 9343]
 gi|265767843|ref|ZP_06095375.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
 gi|52218221|dbj|BAD50814.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
 gi|60494759|emb|CAH09565.1| putative exported peptidyl-prolyl cis-trans isomerase [Bacteroides
           fragilis NCTC 9343]
 gi|263252515|gb|EEZ24043.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
 gi|301164814|emb|CBW24374.1| putative exported peptidyl-prolyl cis-trans isomerase [Bacteroides
           fragilis 638R]
          Length = 456

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/381 (9%), Positives = 112/381 (29%), Gaps = 60/381 (15%)

Query: 157 KMLSRTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
           + L+   +      +  +      + Q   +   N      + +   + A  + ++  + 
Sbjct: 71  EELAVQKLYMHQAVLDSIEVPEAEVIQRVDYQISNYIQ--ALGSRERMEAEFNKTSTQIR 128

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTV 272
           +   +          +    +     +    I+++  E++  +++       + P    V
Sbjct: 129 EAMRENA--------RDGLIVQRMQQKLVGDIKVTPAEVRRYFKELPQDSIPYVPTQVEV 180

Query: 273 EQLVFPNQKEADEAFQ----------SLKKGK-KFIQLA----EEQGKSLSDISLGSFSK 317
           + +    +    E              + KG+  F  LA    E++G ++     G   K
Sbjct: 181 QIITQQPKIPVAEIEDVKRRLREYTDRINKGESDFSTLALLYSEDRGSAIKGGETGFMGK 240

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             +     A+  F+L      + ++   +G+ I  +   +     +         + +  
Sbjct: 241 GQMV-PEYANVAFNLQDTKKISKIVESEYGFHIIQLIEKRGDRINT--------RHILLK 291

Query: 378 TKASEKVKEDYKR-----LEEFLALGTSMDEISRRE----------KIVSIDLPLVDFAG 422
            K S+K  ++          +  +   + D+ +              ++           
Sbjct: 292 PKVSDKELDEANARLDSIANDIRSDKFTFDQAASALSQDKDTRNNHGLMQNPQNQTAKFE 351

Query: 423 KDVKGKEVAAIPYKEQL--LFRVFGKDDPLSKDHTVALPD-----GSYMWVQIKESIPAR 475
                +E+A +  K  +  + + F   +P       A+         +      +    +
Sbjct: 352 MQDLPQEIAKVVDKMNIGEISKAFTMVNPKDGKEVCAIVKLKSRINGHKATITDDYQNLK 411

Query: 476 DRKLEEVLTDVKKDWKTVKTA 496
           +  L++   +  + W   K  
Sbjct: 412 EIVLDKRREEALQKWIVEKQK 432


>gi|113477056|ref|YP_723117.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Trichodesmium
           erythraeum IMS101]
 gi|110168104|gb|ABG52644.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Trichodesmium
           erythraeum IMS101]
          Length = 254

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 26/259 (10%)

Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR---SVDYIVLN 198
           ++  +   E    + + L      G        + ++         ++R    VD  ++ 
Sbjct: 3   SQALLTVGEEEVSWGQSLKYLQASGKLQS--FVTEIVAQYVIEKELQSRKDIDVDQAIIQ 60

Query: 199 NR--HVPAIADPSNAV-LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
                        +     +W ++   NY A E + ++        K+ K  I+++ ++ 
Sbjct: 61  QAIIDFRLQRKLEDQEKFQEWLKQNGINYNALESQIVNSFRL----KQLKDSITSERIEE 116

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSLS---DIS 311
            + + K      +   + ++V  +++  D  ++ + + G KF  LA+E   +     +  
Sbjct: 117 YFNQRKAGL---DSVILSRIVVQDKELVDALYRKIVEDGAKFEDLAKEYSVTNDKNFNGI 173

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           +G  S   +P+  L D+I S A  GD       +  + I  +  ++ +   S      +I
Sbjct: 174 MGVVSLASLPE-DLRDTINS-ANSGDILGPFKTNQFWSIFRLEQLQGA---SLDN--PEI 226

Query: 372 ANQMRITKASEKVKEDYKR 390
             ++        + E  + 
Sbjct: 227 KKKLNSELFERWITEQLQN 245


>gi|85704061|ref|ZP_01035164.1| hypothetical protein ROS217_13721 [Roseovarius sp. 217]
 gi|85671381|gb|EAQ26239.1| hypothetical protein ROS217_13721 [Roseovarius sp. 217]
          Length = 288

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 64/172 (37%), Gaps = 17/172 (9%)

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEADEAFQSLKKG 293
             F   +     +  +  L+A +E   ++Y      +  Q++F P ++ A     +++  
Sbjct: 101 YEFLTQDLAYDTDPDDATLRAYFEAQGDRYAQSARVSFHQVLFSPTRRGAQAEIDAVQTL 160

Query: 294 KKFIQLAEEQG------------KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
               + A E G              L+ + L +    + PD     +     + G +   
Sbjct: 161 ADL-KWATEPGTAETLGDVTSLPSDLAGLDLHAIEAMFGPDFV---AALQTVEPGRWAGP 216

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           I   +G  +  ++   P   ++F+EV++ + +     +     +  Y+RL E
Sbjct: 217 IVSDYGLHLVWITERAPGRRLAFEEVRQRVRDDWIYEQRVAANEAVYRRLLE 268



 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 37/140 (26%), Gaps = 7/140 (5%)

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
                 +D +     +     P       DV              +  +FG D   +   
Sbjct: 148 RGAQAEIDAVQTLADLKWATEPGTAETLGDVTSLPSDLAGLDLHAIEAMFGPDFVAALQT 207

Query: 455 TV-------ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
                     + D     V I E  P R    EEV   V+ DW   +      +   +L+
Sbjct: 208 VEPGRWAGPIVSDYGLHLVWITERAPGRRLAFEEVRQRVRDDWIYEQRVAANEAVYRRLL 267

Query: 508 LEYSKEGKNFRDIGKNLGAS 527
             Y    +     G + G  
Sbjct: 268 ERYEVVVETPAAPGTSAGGE 287


>gi|70990890|ref|XP_750294.1| peptidyl-prolyl cis-trans isomerase [Aspergillus fumigatus Af293]
 gi|74669729|sp|Q4WJM6|PIN4_ASPFU RecName: Full=Peptidyl-prolyl cis-trans isomerase pin4;
           Short=PPIase pin4; AltName: Full=Parvulin-14;
           Short=Par14
 gi|66847926|gb|EAL88256.1| peptidyl-prolyl cis-trans isomerase [Aspergillus fumigatus Af293]
 gi|159130767|gb|EDP55880.1| peptidyl-prolyl cis-trans isomerase [Aspergillus fumigatus A1163]
          Length = 129

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF  +A E  +  +    SLG   +  + +     + 
Sbjct: 40  VRHILCEKFSKKEEALEKLRNGAKFDDVAREYSEDKARQGGSLGWKVRGSL-NADFEKAA 98

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           + L +               FGY I  V   K
Sbjct: 99  YEL-EPSTTANPKYVEVKTGFGYHIIMVEGRK 129


>gi|301155190|emb|CBW14654.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
          Length = 310

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/370 (11%), Positives = 105/370 (28%), Gaps = 80/370 (21%)

Query: 23  VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
           + F + GL       +    V +V    +         + ++  +  K G          
Sbjct: 9   LLFAMIGLFTFSQVQAEERVVATVNGTPI--------LQSQVNAVMGKKGSQ-------- 52

Query: 83  VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142
               +  LD ++     ++ I++ G++ +   V   +          N  ++  F+  L 
Sbjct: 53  ----RAALDKIIDDMLTEKAIKESGVKVNQAEVNRIVEDIAA----KNGLTYGQFLDALD 104

Query: 143 REGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
            +GI+   +    ++ +    V        +  +   +D   +                 
Sbjct: 105 YQGISLNAFKQQISRQMLMAGVRNHAIQNSVDVTREQVDALGKQML------------DE 152

Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
             A       +  ++               + +IL  ++                   N 
Sbjct: 153 AKAKGTAQKVMGKEY--------------EVRHILLKLNPLL----------------ND 182

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
            +  +   R   +++      AD A +           +++     +  SLG    E   
Sbjct: 183 AQAKAELERIRSEIISGKMTFADAALK----------YSKDYLSGANGGSLGYAFPEAYV 232

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
               A  +     +G  +      FG+ I  V+  +     +    ++    Q+  ++  
Sbjct: 233 GP-FAKMV-ETTPQGTISAPFKSEFGWHILEVTGTRDG-DKTEDAYRQKAYEQIVNSQLQ 289

Query: 382 EKVKEDYKRL 391
           E  K+  K L
Sbjct: 290 EATKDWVKAL 299


>gi|148547870|ref|YP_001267972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           F1]
 gi|148511928|gb|ABQ78788.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           F1]
          Length = 91

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++     EA++  Q +  G+ F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKTADEAEKLRQRIANGEAFDVLAKKCSLCPSGKRGGDLGEIRPGQMVG-AIDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
            IF    +      I   FGY +  
Sbjct: 63  VIFKKPLR-VVHGPIKSKFGYHLVQ 86


>gi|302753416|ref|XP_002960132.1| hypothetical protein SELMODRAFT_74131 [Selaginella moellendorffii]
 gi|300171071|gb|EFJ37671.1| hypothetical protein SELMODRAFT_74131 [Selaginella moellendorffii]
          Length = 148

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q   ++A++ L+ G           +F ++A E  +  S      LG F +
Sbjct: 50  KARHVLCEKQGRINDAYKKLQDGWINNGDKVPPAEFAKVAAEFSECPSGKKGGDLGWFPR 109

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      +  FS    G  +     + GY    V   K
Sbjct: 110 GKMAGP-FQEVAFS-TPVGSTSAPFKSTHGYHFILVEGRK 147


>gi|302804512|ref|XP_002984008.1| hypothetical protein SELMODRAFT_423141 [Selaginella moellendorffii]
 gi|300148360|gb|EFJ15020.1| hypothetical protein SELMODRAFT_423141 [Selaginella moellendorffii]
          Length = 148

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q   ++A++ L+ G           +F ++A E  +  S      LG F +
Sbjct: 50  KARHVLCEKQGRINDAYKKLQDGWLNNGDKVPPAEFAKVAAEFSECPSGKKGGDLGWFPR 109

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      +  FS    G  +     + GY    V   K
Sbjct: 110 GKMAGP-FQEVAFS-TPVGSTSAPFKSTHGYHFILVEGRK 147


>gi|254369748|ref|ZP_04985758.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122707|gb|EDO66836.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 469

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/329 (11%), Positives = 99/329 (30%), Gaps = 80/329 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQ-KIGFVVNSERARSVGLDKKILDNLVSGAT 98
           + TV  V  + +           EL  +   +     N++  +   L ++ L +L+S + 
Sbjct: 52  NKTVAIVNSRPITSFELDQ----ELAKLEAMQPNSAFNTDPLK---LKRQALQDLISQSV 104

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L Q  E   +   + ++   I          N  S +     +   G++   Y       
Sbjct: 105 LLQLAERNNIMISNQQLDSAIQDIAA----KNGVSVESLKLNVEAAGMSFDSY------- 153

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD---PSNAVLTQ 215
                                        + R +D ++++     AIA     S   + +
Sbjct: 154 -----------------------------KKRIIDQLMISQLQQQAIAQQVYVSPEEIQK 184

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           + +K++  +         Y L       K + ++  + +   +K  + +           
Sbjct: 185 YIKKHQKEFDREMSPVKLYTL-------KNLIVALPDSKKARQKKIDLF----------- 226

Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSL 332
                    +   ++  G   F ++ ++  ++ + +S G  S++   D    +       
Sbjct: 227 --------KKLALAVNNGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKE 278

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
            K    +     +    + ++ NI     
Sbjct: 279 LKNHQVSQPFIVNHTLQMIYIDNIDEKAP 307


>gi|91205025|ref|YP_537380.1| hypothetical protein RBE_0210 [Rickettsia bellii RML369-C]
 gi|122426012|sp|Q1RK23|Y210_RICBR RecName: Full=Uncharacterized protein RBE_0210; Flags: Precursor
 gi|91068569|gb|ABE04291.1| unknown [Rickettsia bellii RML369-C]
          Length = 294

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 18/193 (9%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            K  L+++ V F    +++       S+ V  V  + +  + F    K  +      +  
Sbjct: 1   MKKLLLIITVFFTCSAVAE------TSNIVALVNNEPITLNEFRARKKMIMA-----LNN 49

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
           V     A++  L    + +L+  + L Q+  D   E     +   I          NK  
Sbjct: 50  VEEVTPAQNKQLSDIAIKSLIDESLLFQYYGDK--EISQEEIDNAIKSIE----DRNKMP 103

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SV 192
           H   +  L    +N   +I      L + +V+      ++ SN  +D A     +    V
Sbjct: 104 HGSLLQYLKSRSVNPDSFISQIKSELIKMNVLSGLSRSVQVSNKEIDVAILSSDQKEVEV 163

Query: 193 DYIVLNNRHVPAI 205
              +  ++     
Sbjct: 164 SMQIFTSKDKSDK 176


>gi|170084513|ref|XP_001873480.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651032|gb|EDR15272.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 163

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 35/138 (25%)

Query: 243 EKKIEISNDELQ----AEYEKNKEKYFSPEIRTVEQLVFP-----------------NQK 281
           E    +S +E++     EY  N              L+                    ++
Sbjct: 28  EAPPNLSEEEIKGLPGYEYLSNPH----AGQVRASHLLIKHKDSRRPSSWKEENITRTKE 83

Query: 282 EADEAF----QSLKKGKK-FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333
           EA E        +      F +LA +     S      LG F +  +      D+ + L 
Sbjct: 84  EATEILRGHEAKINGSTDKFTELASKHSDCSSHTHGGDLGWFGRGQMQKP-FEDAAYGL- 141

Query: 334 KKGDFTPVIHGSFGYVIA 351
           K G+ + VI    G  + 
Sbjct: 142 KVGEISDVISTDSGVHLV 159


>gi|237745218|ref|ZP_04575699.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 7_1]
 gi|256026678|ref|ZP_05440512.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D11]
 gi|260495466|ref|ZP_05815592.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 3_1_33]
 gi|289764674|ref|ZP_06524052.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D11]
 gi|229432447|gb|EEO42659.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 7_1]
 gi|260197003|gb|EEW94524.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 3_1_33]
 gi|289716229|gb|EFD80241.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D11]
          Length = 227

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 4/164 (2%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           Y+  +  +  +   I  D L+  YE+NKE Y   E   ++ +   +  +A+E  + +   
Sbjct: 40  YLEREAAKIVENTNIEEDVLKKIYEENKELYKFAEKVKLDTIFVRDLAKAEEILKDVNI- 98

Query: 294 KKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           + F +L E   E+G+    ++        I  V   +      K       I    G+ I
Sbjct: 99  ENFNELKEKNDEKGQEAKGVADEFLFITEIHPVIAEEISKEEGKNVIIKKAIPVQEGFHI 158

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            ++ + +      + E ++ I   ++    S+   +  + +   
Sbjct: 159 IYLKDREEPRQAIYDEAREAILADVKRNIFSQVYNQLIQDIANE 202


>gi|226506196|ref|NP_001152416.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Zea mays]
 gi|195656053|gb|ACG47494.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Zea mays]
          Length = 151

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 15/94 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
             + ++   Q + +EA++ L+ G           +F ++A+E  +  S      LG F +
Sbjct: 53  KAKHVLCEKQGKINEAYKKLQDGWLNNGDKVPPAEFAKVAQEYSECPSGKKGGDLGWFPR 112

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
             +      +  F+   +G  +     + GY   
Sbjct: 113 GKMAGP-FQEVAFN-TPEGTVSAPFKSTHGYHFI 144


>gi|325277728|ref|ZP_08143294.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas sp. TJI-51]
 gi|324097138|gb|EGB95418.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas sp. TJI-51]
          Length = 91

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++     EA++  Q +  G+ F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKTADEAEKLKQRIANGEAFDVLAKKFSTCPSGKRGGDLGEVRPGQMVG-AIDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
            IF    +      I   FGY +  
Sbjct: 63  VIFKKPLR-VVHGPIKSKFGYHLVQ 86


>gi|94497694|ref|ZP_01304262.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingomonas sp.
           SKA58]
 gi|94422911|gb|EAT07944.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingomonas sp.
           SKA58]
          Length = 462

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 57/462 (12%), Positives = 111/462 (24%), Gaps = 93/462 (20%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V  + +  +         L +I    G  V+ E      L  ++L NL+      Q  
Sbjct: 74  AIVNGRIITGTDVDQR----LALIITANGGKVSDEE--KERLRVQVLRNLIDETLQIQEA 127

Query: 104 EDIGLEADHGRVWGEIARSPL-FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
               ++     +     R    F     +F      + L  +G +           L+  
Sbjct: 128 AANDIKIAPEEIEQSYQRVAANFRKSPTEFD-----AYLRSQGSSAASIKRQIEGELA-- 180

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
                                          +  L  R++    + S   +    ++   
Sbjct: 181 -------------------------------WSRLLRRNIQPFVNVSEDEVKSVIDRLNA 209

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
              + EY+     L    E + +I                                    
Sbjct: 210 AKGSDEYRIGEIYLSATPENQAQIV---------------------------------AN 236

Query: 283 ADEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           A    Q +++G  F   A    E   +     LG      +P   LA +   + + G   
Sbjct: 237 ARNIIQQIQQGGSFQAYARQFSEASTAAVGGDLGWIRPAQLP-SELAQAAAEM-QVGQIA 294

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
             I    G  I +V + +   T        D  + +   K    +       E+  A   
Sbjct: 295 GPIETVGGVSIIYVMDKRKVLT-------ADPRDALLSLKQLSVLFPKGTTKEQAGAKAA 347

Query: 400 SMDEISRREKIVSIDLPLVDFAGKD-VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
                 +  K       +    G D V    V       QL   +       +     ++
Sbjct: 348 EFAAAVKEIKGCGQANEIGARIGADVVDNDNVKVRDLPPQLQEILLNLQVGETTPPFGSI 407

Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
            DG  + +      PA           +    +  +  +   
Sbjct: 408 EDGVRVLIVCGRDDPASANAPNA--DQIMAQLEEERVNKRAR 447


>gi|152988940|ref|YP_001346623.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           aeruginosa PA7]
 gi|150964098|gb|ABR86123.1| probable peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa PA7]
          Length = 272

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 21/201 (10%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           E   ++   PE  RI  +L    E+ +  E   D  +  Y  N  +   P    +  ++ 
Sbjct: 69  EARCEDGETPEEARIRQLL---EEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLL 125

Query: 278 P-----------NQKEADEAFQSLKKG-KKFIQLAEEQGKSLS---DISLGSFSKEYIPD 322
                        +K+A E    L+   ++F+ LA       S      LG         
Sbjct: 126 ACAPDDLEGRETARKQAAELLDELRGHPERFVDLARRFSACPSKEEGGDLGWIVPGQTV- 184

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +   A  G     +   +G  +  +   +    + F   +  IA  ++      
Sbjct: 185 PEFEKRLLRRA-PGLLEHPLESRYGLHVVELLAREGGEPLGFDAARAQIATHLQAQVLQR 243

Query: 383 KVKEDYKRLE-EFLALGTSMD 402
            V +    L  +    G + +
Sbjct: 244 AVGQYIGVLAGDARIEGFAFE 264


>gi|299132103|ref|ZP_07025298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
 gi|298592240|gb|EFI52440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
          Length = 274

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 57/166 (34%), Gaps = 19/166 (11%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------- 277
           E    + +   V  + K  E      +  YE+N +++   ++     ++           
Sbjct: 78  ETAEEAAMRALVEREVKTPEPDEAACRRFYEQNIQRFRLGDLYEAAHILIAAPRDNQAAR 137

Query: 278 -PNQKEADEAFQSLKKGKK-FIQLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFS 331
              +++A+    ++K+    F  +A         +     LG  S+      +  ++   
Sbjct: 138 VAAREQAETILAAVKENPAVFADMASNHSACSTSAAEGGRLGQISRGQTV--AEFEAALE 195

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             + G+   +    +G+ +  +       T+ F+  K+ IA  +  
Sbjct: 196 RMQPGEM-AIAETRYGFHVVRLDRRAEGQTLPFELAKERIAGYLAT 240


>gi|257898442|ref|ZP_05678095.1| rotamase [Enterococcus faecium Com15]
 gi|257836354|gb|EEV61428.1| rotamase [Enterococcus faecium Com15]
          Length = 295

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 77/237 (32%), Gaps = 32/237 (13%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK--------YK 221
           G +   +   +   +   +      IV          + S+  +T+ + +        YK
Sbjct: 38  GTLTVQDFYDNPKVKSNNQTLLRKMIVFKAFDDVYGKEISSKEVTKEYNEQIKKLGPNYK 97

Query: 222 DNYRAPEYKRISYILFDVHEKE------KKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +  +A      +Y                 +++++ +L   +++   +  +      + +
Sbjct: 98  EQLKAVGQTEETYKKLLKQMLAFQDGLKANVKLTDKDLDTAWKEFHPEVST------QII 151

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFS 331
            F  ++EAD A + + +G+ F +L +  GK      +D  +   S        +  + F 
Sbjct: 152 PFSTKEEADNAKKEVNEGENFSKLVQAYGKNKTLKETDGKMNFDSTNPGIPTEVKKAAFQ 211

Query: 332 LAKKGDFT------PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           L   G+ +              Y +  +   +        + K ++      TK  +
Sbjct: 212 L-NNGEVSDIIPVTDPTTYQQSYYLVKMVKKQDKGANK-DKYKSELEKIATETKTLD 266


>gi|78063929|ref|YP_373837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
 gi|77971814|gb|ABB13193.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
          Length = 236

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 68/228 (29%), Gaps = 13/228 (5%)

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
              +D   R   +  S          +        A     +    +   A +  + +  
Sbjct: 2   QADVDTLLRASGQPDSPQIRQAIKNQLITRVLVQQAAEKANYADKPEVKAAVQQAKANAE 61

Query: 236 L-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           +   + +  K   ++ ++++A Y++        E +    ++  +   A      LK GK
Sbjct: 62  VQLYLRDNVKPEPVTEEQVKARYDELVATLGKNEYKP-RLIIVQDPVTAATVLSELKAGK 120

Query: 295 KFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            F  LA +   + S  + G              K     + +A ++  L      +  I 
Sbjct: 121 SFEGLARQYSMAPSRDTGGELPWVSFHTPVTEGKTSGLPLPIAQALEKLKVGAATSDSIP 180

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                 I  +   +P+    F   K  +  Q++     +   +    L
Sbjct: 181 VDGVRAIVKLDAKRPTQVPGFATAKPGLQQQLQAAAVEKASAQMIGNL 228


>gi|261401823|ref|ZP_05987948.1| conserved hypothetical protein [Neisseria lactamica ATCC 23970]
 gi|269208030|gb|EEZ74485.1| conserved hypothetical protein [Neisseria lactamica ATCC 23970]
          Length = 252

 Score = 57.7 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 82/230 (35%), Gaps = 21/230 (9%)

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            ++G        S     QA R     R     VL N  + A  D  +  +   F+  + 
Sbjct: 37  QLMGQPDLHTEQSQKPDGQAIRNDAVRRLQTLEVLKNGALQAGLD-KDKGVQNRFKIAEA 95

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
           ++ A EY R           E+   +S  EL+  YE+            ++Q+ F  + E
Sbjct: 96  SFYAQEYVRF---------LERSETVSESELRQFYERQIRMI------KLQQVGFATEDE 140

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PV 341
           A +A Q L KG  F  L +                + +P+   +   F+   +GD T   
Sbjct: 141 ARQAQQLLLKGLSFEGLMKRYPNDEQAFD-SFIMAQQLPEPLASR--FAAMNRGDVTRDP 197

Query: 342 IHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +     Y +  +S I K      F+ V+  +   +R  KA  KV    + 
Sbjct: 198 VKLGERYYLFKLSEIGKNPDAQPFELVRNQLEQGLRQEKARLKVDALLEE 247


>gi|224456680|ref|ZP_03665153.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158767|gb|ADA78158.1| Peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 467

 Score = 57.7 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/306 (10%), Positives = 84/306 (27%), Gaps = 74/306 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           + TV  V  + +          + L  +     F  +        L ++ L +L+S + L
Sbjct: 52  NKTVAIVNSRPITSFELDQELAK-LEAMQPNSAFNTDP-------LKRQALQDLISQSVL 103

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E   +   + ++   I          N  S +     +   G++   Y       L
Sbjct: 104 LQLAERNNIMISNQQLDSAIQDIAA----KNGVSVESLKLNVEAAGMSFDSYKKRIRDQL 159

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
             + +                                   + +      S   + ++ +K
Sbjct: 160 MISQLQ---------------------------------QQAIAQQVYVSPEEIQKYIKK 186

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           ++  +         Y L       K + ++  + +   +K  + +               
Sbjct: 187 HQKEFDREMSPVKLYTL-------KNLIVALPDSKKARQKKIDLF--------------- 224

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKG 336
                +   ++  G   F ++ ++  ++ + +S G  S++   D    +        K  
Sbjct: 225 ----KKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKNH 280

Query: 337 DFTPVI 342
             +   
Sbjct: 281 QVSQPF 286


>gi|242785190|ref|XP_002480544.1| peptidyl-prolyl cis-trans isomerase [Talaromyces stipitatus ATCC
           10500]
 gi|218720691|gb|EED20110.1| peptidyl-prolyl cis-trans isomerase [Talaromyces stipitatus ATCC
           10500]
          Length = 127

 Score = 57.7 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF  +A E  +  +    SLG   +  +         
Sbjct: 38  VRHILCEKHSKKEEALEKLRNGAKFDDVAREYSEDKARQGGSLGWKVRGSLHG-DFEKVA 96

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           + L +               FGY I  V   K
Sbjct: 97  YEL-EPSTTANPKYAEVKTGFGYHIIMVEGRK 127


>gi|294055716|ref|YP_003549374.1| hypothetical protein Caka_2186 [Coraliomargarita akajimensis DSM
           45221]
 gi|293615049|gb|ADE55204.1| conserved hypothetical protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 291

 Score = 57.7 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 71/189 (37%), Gaps = 7/189 (3%)

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
           I  +      +    +I   +L+A +    E+Y  P   + +Q+ F    +A+   + L 
Sbjct: 103 IQKMNLLSAGRSNTDDIPQADLEAFFALRSERYQVPAQYSFQQIYFKADADAEAQARDLA 162

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-----DSIFSLAKKGDF--TPVIHG 344
                 +   E+  +  D S+   +   + +  +A     +   +L+   +   +  +  
Sbjct: 163 AQFNDSEPTAERLPNYGDHSMLVRAMHNVSEPEVARIFGNEFAANLSHLSEHKWSGPVRS 222

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
           ++G  +  ++ ++ +      +V++ +   +R   +    ++ Y  L     L  S +  
Sbjct: 223 TYGMHVVKLTQLEQAHIPELNQVREQVETDLRYETSEAAKEQAYLELASKYELQLSDEAQ 282

Query: 405 SRREKIVSI 413
           +  E   ++
Sbjct: 283 ALMEDANAL 291


>gi|152988040|ref|YP_001345424.1| putative lipoprotein [Pseudomonas aeruginosa PA7]
 gi|150963198|gb|ABR85223.1| lipoprotein, putative [Pseudomonas aeruginosa PA7]
          Length = 428

 Score = 57.7 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 54/152 (35%), Gaps = 7/152 (4%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
            ++S+ + +A Y +N E+Y +        +   +Q  AD  +  L+KG  F +       
Sbjct: 269 AKVSDQDAEAYYRRNLERYRNVAQVQAVHIRLADQASADRVYAELQKGLAFDEAVRRHSL 328

Query: 306 S-----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +          LG    +      L  +   + K    +  +     + I  V + +   
Sbjct: 329 ADDRDRDPPGDLGLIRPQDGQLDLLRKTAL-IQKADTLSQPMRIDGAFEIVRVRSREDRQ 387

Query: 361 TV-SFQEVKKDIANQMRITKASEKVKEDYKRL 391
              S + V+ ++   +   + + + +   + L
Sbjct: 388 LPLSDRSVRFEVNQAVARERLAAQFETQLRGL 419


>gi|114656719|ref|XP_001161176.1| PREDICTED: hypothetical protein [Pan troglodytes]
 gi|332843741|ref|XP_003314710.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Pan troglodytes]
          Length = 130

 Score = 57.7 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  +++    +  EA + LK G +F ++A +  +  +     LG  ++  +      ++
Sbjct: 39  KVRHILWEKHDKIMEAMEKLKSGMRFNEVATQYSEDKARQGGVLGWMTRGSMVGP-FQEA 97

Query: 329 IFSLAKKG----DFTPV-IHGSFGYVIAHVSNIK 357
            F+L   G     FT   +   FGY I  V   K
Sbjct: 98  AFALPISGMDKPVFTDPAVKTKFGYHIM-VEGRK 130


>gi|302387550|ref|YP_003823372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           saccharolyticum WM1]
 gi|302198178|gb|ADL05749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           saccharolyticum WM1]
          Length = 323

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 91/250 (36%), Gaps = 22/250 (8%)

Query: 152 IDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
             +  + +  + + G+    G      L+DQ K F  E + ++ +  N          ++
Sbjct: 53  ERNRYQEIYTSQIWGVDLPDGQTFETYLVDQVKEFLQEMKMMNLLARN-----KGVTLTS 107

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYI---LFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
           A   +  +  ++ + +   + ISY+     DV    ++  +SN  +    +    +    
Sbjct: 108 AEKEEVRKASEEFFSSLTKEDISYMGAAEEDVRTMYEEYYLSNKVVDELTKDMNLEISDS 167

Query: 268 EIRT--VEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
           E +   VEQ+V  ++ EA E       +G  F  LA E  +  S        +   P   
Sbjct: 168 EAKVIVVEQIVMSDEAEAGEVLLKAGSEGADFSALAREYSEDGSVERK--VGRGEDPGP- 224

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             D+ FSL+  G  + V+     Y I    N         ++  ++    +   +  E  
Sbjct: 225 FEDAAFSLS-AGQISQVVENKGKYYIIRCVNDYD------EDATQERKAGLYQKRKKEAF 277

Query: 385 KEDYKRLEEF 394
            + Y + ++ 
Sbjct: 278 DQIYSQFKQE 287



 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 8/137 (5%)

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           E+     K     +      ++A +++L+   EG +F  + +          ++ R ++ 
Sbjct: 163 EISDSEAKVIVVEQIVMSDEAEAGEVLLKAGSEGADFSALAREYSEDGSVERKVGRGEDP 222

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
             F         FS     +       G  Y++  V +      QE+    + L Q   K
Sbjct: 223 GPFE-----DAAFSLSAGQISQVVENKGKYYIIRCVNDYDEDATQERK---AGLYQKRKK 274

Query: 601 DLLDSVIAYLKSQYSVT 617
           +  D + +  K +  VT
Sbjct: 275 EAFDQIYSQFKQENPVT 291


>gi|295702690|ref|YP_003595765.1| putative lipoprotein [Bacillus megaterium DSM 319]
 gi|294800349|gb|ADF37415.1| putative lipoprotein [Bacillus megaterium DSM 319]
          Length = 264

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 9/154 (5%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           V    TV  V  +KV    +  +         Q      + E A+   + ++ +DNLV  
Sbjct: 65  VDDKKTVAVVNGKKVSGEEYNAALSSSQAQYQQMGQDPTSKEAAKQ--VKQQTIDNLVGQ 122

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARS-PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
             L Q  E+ G +A    V  ++  +   F           F + L   G+ + +     
Sbjct: 123 TLLLQEAENKGYKATDEEVNKKLKETKKQFKT------DKQFKAALKDAGLTQSQLKSEL 176

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
              +     V   +     ++  +      + + 
Sbjct: 177 ADSIKYQQYVDKDIQTPEVTDKEIQDYYDQFAKQ 210


>gi|257892780|ref|ZP_05672433.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,408]
 gi|257829159|gb|EEV55766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,408]
          Length = 303

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 71/193 (36%), Gaps = 16/193 (8%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +S  +V+          + +        FE++  D   ++ + V +  D +   L   F+
Sbjct: 36  ISEQEVMDSLKKMQGADSTVQQLIVYQVFEDKYGD--DVSTKEVDSQYDQTKKQLGDSFD 93

Query: 219 KY-KDNYRAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
              K      E  +  I   L      +K I++++++L+  ++              + +
Sbjct: 94  SQLKTAGYTEETFKDSIKQSLAFQEGLKKHIKLTDEDLKTAWKTFHP------EVEAQII 147

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIPDVSLADSIFS 331
              ++ +A +  ++  KG  F +LA+++    +    G   K           + ++ F 
Sbjct: 148 QVASENDAKDVKKAADKGDDFSKLAKDKSTDTTTKEDGGKVKFDSTTTTVPTEVKEAAFK 207

Query: 332 LAKKGDFTPVIHG 344
           L K G  + VI  
Sbjct: 208 L-KDGQVSDVITS 219


>gi|26989789|ref|NP_745214.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           KT2440]
 gi|24984686|gb|AAN68678.1|AE016497_3 peptidyl-prolyl cis-trans isomerase C [Pseudomonas putida KT2440]
          Length = 91

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++     EA++  Q +  G+ F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKTADEAEKLKQRIANGEAFDVLAKKFSLCPSGKRGGDLGEIRPGQMVG-AIDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
            IF    +      I   FGY +  
Sbjct: 63  VIFKKPLR-VVHGPIKSKFGYHLVQ 86


>gi|59801982|ref|YP_208694.1| hypothetical protein NGO1655 [Neisseria gonorrhoeae FA 1090]
 gi|194099535|ref|YP_002002665.1| hypothetical protein NGK_2040 [Neisseria gonorrhoeae NCCP11945]
 gi|239999741|ref|ZP_04719665.1| hypothetical protein Ngon3_09726 [Neisseria gonorrhoeae 35/02]
 gi|240014899|ref|ZP_04721812.1| hypothetical protein NgonD_09718 [Neisseria gonorrhoeae DGI18]
 gi|240081489|ref|ZP_04726032.1| hypothetical protein NgonF_09308 [Neisseria gonorrhoeae FA19]
 gi|240116504|ref|ZP_04730566.1| hypothetical protein NgonPID1_09771 [Neisseria gonorrhoeae PID18]
 gi|240118727|ref|ZP_04732789.1| hypothetical protein NgonPID_09787 [Neisseria gonorrhoeae PID1]
 gi|240121969|ref|ZP_04734931.1| hypothetical protein NgonPI_09443 [Neisseria gonorrhoeae PID24-1]
 gi|240124266|ref|ZP_04737222.1| hypothetical protein NgonP_10078 [Neisseria gonorrhoeae PID332]
 gi|240126476|ref|ZP_04739362.1| hypothetical protein NgonSK_09778 [Neisseria gonorrhoeae SK-92-679]
 gi|254494529|ref|ZP_05107700.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260439739|ref|ZP_05793555.1| hypothetical protein NgonDG_01378 [Neisseria gonorrhoeae DGI2]
 gi|268595555|ref|ZP_06129722.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268597590|ref|ZP_06131757.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268602175|ref|ZP_06136342.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268604441|ref|ZP_06138608.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682895|ref|ZP_06149757.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268685061|ref|ZP_06151923.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291042989|ref|ZP_06568727.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293398330|ref|ZP_06642521.1| hypothetical protein NGNG_01945 [Neisseria gonorrhoeae F62]
 gi|59718877|gb|AAW90282.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193934825|gb|ACF30649.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|226513569|gb|EEH62914.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548944|gb|EEZ44362.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268551378|gb|EEZ46397.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268586306|gb|EEZ50982.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268588572|gb|EEZ53248.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268623179|gb|EEZ55579.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268625345|gb|EEZ57745.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291013128|gb|EFE05097.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611254|gb|EFF40338.1| hypothetical protein NGNG_01945 [Neisseria gonorrhoeae F62]
          Length = 252

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 81/235 (34%), Gaps = 21/235 (8%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
                 ++         S     QA R     R     VL NR +    D  +  +   F
Sbjct: 32  DTLVAQIMQQADRHAEQSQRPDGQAIRNDAVRRLQTLEVLKNRALKEGLD-KDKDVQNRF 90

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +  + ++ A EY R           E+   +S   L+  YE+            ++Q+ F
Sbjct: 91  KIAEASFYAEEYVRF---------LERSETVSESALRQFYERQIRMI------KLQQVSF 135

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
             ++EA +A Q L KG  F  L +           G    + +P+   +   F+   +GD
Sbjct: 136 ATEEEARQAQQLLLKGLSFEGLMKRYPNDEQAFD-GFIMAQQLPEPLASQ--FAGMNRGD 192

Query: 338 FT-PVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            T   +     Y +  +  + K      F+ V+  +   +R  KA  K+    + 
Sbjct: 193 VTRNPVKLGERYYLFKLGAVGKNPDAQPFELVRNQLEQGLRQEKARLKIDALLEE 247


>gi|313498907|gb|ADR60273.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           BIRD-1]
          Length = 91

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++     EA++  Q +  G+ F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKTADEAEKLKQRIANGEAFDVLAKKCSLCPSGKRGGDLGEIRPGQMVG-AIDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
            IF    +      I   FGY +  
Sbjct: 63  VIFKKPLR-VVHGPIKSKFGYHLVQ 86


>gi|296532230|ref|ZP_06894978.1| peptidyl-prolyl cis-trans isomerase [Roseomonas cervicalis ATCC
           49957]
 gi|296267447|gb|EFH13324.1| peptidyl-prolyl cis-trans isomerase [Roseomonas cervicalis ATCC
           49957]
          Length = 401

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/322 (13%), Positives = 82/322 (25%), Gaps = 80/322 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +S V  V    V       + +  L  ++  +G   +        L  ++   LV     
Sbjct: 8   NSIVAVVNGDVVTAGEV--AGRARLFALNAGMGPAPD----VVQRLRPQVTRLLVDERLR 61

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q ++  G+      V   +                                       L
Sbjct: 62  MQEVQRRGIPVPDEDVAEAVQEIES-------------------------------RNGL 90

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            R  +VG       P   L DQ +     +R V         +   A  S A + ++   
Sbjct: 91  PRGGLVGQLRAAGIPPRALFDQIRNQIGWSRLVR------AQLGQQAQISPAEVAEFVAA 144

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +K     PEY      +       +                      PE+R         
Sbjct: 145 HKARTGQPEYLVSEIFIPVDDPGAE----------------------PEVRRF------- 175

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
               ++    L++G  F   A +  +   +L    +G   +    D  +A SI      G
Sbjct: 176 ---VEDVVGQLRRGVPFPAAATQFSQSQTALQGGDMGWV-RGEEFDPGVA-SILERMPPG 230

Query: 337 DFTPVIHGSFGYVIAHVSNIKP 358
                     G+ I  +   + 
Sbjct: 231 AIANPQRVPGGFQIVALRQKRE 252


>gi|288575825|ref|ZP_05977675.2| conserved hypothetical protein [Neisseria mucosa ATCC 25996]
 gi|288566815|gb|EFC88375.1| conserved hypothetical protein [Neisseria mucosa ATCC 25996]
          Length = 298

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 90/246 (36%), Gaps = 23/246 (9%)

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
              + L+   V+   +         LDQ+  F    ++++    + +   A   PS    
Sbjct: 64  QLRQELTNRQVISTVIA-QEAKRRKLDQSAEF---KKALEQARADAKKQGADKKPS---F 116

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
              +  ++D+                 +  +K  ++  E++  Y++  + Y   +   + 
Sbjct: 117 KTEWAAFEDDL---------LGQALAIDVLRKNPVNEQEIKKSYDEFAKFYQGSQEVRLR 167

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL- 332
           ++V   + +  +A   LK  K F  + ++          G   + Y+P   L ++   L 
Sbjct: 168 EIVTRTKADGQKAAADLKAKKAFTAVLKQYSIDEEAKKAGGIPQAYVPLKDLQEAAPPLY 227

Query: 333 -----AKKGD-FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
                 KKG+  +  +     Y + +V + +     +F E+K  +A  +   +  + ++ 
Sbjct: 228 AAVKDLKKGEATSEPLQDGNSYAVFYVDDRRDVKVPAFNEIKGSMARDLSTARIDDTMRA 287

Query: 387 DYKRLE 392
             ++ +
Sbjct: 288 LLQKAD 293


>gi|84625193|ref|YP_452565.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|121956520|sp|Q2NZI6|SURA_XANOM RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|84369133|dbj|BAE70291.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 463

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 52/175 (29%), Gaps = 10/175 (5%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
           +   +L +   I  L+ A  S         V    V  S    + +      + +   + 
Sbjct: 8   VLASLLAITSTISPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLP 67

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
             +      L +++L+ L+         +  G+      +   IA       + N  + D
Sbjct: 68  PDDV-----LQRQVLERLILVKLQVGRADGSGIRVSDEELNRAIASI----AQQNGTTVD 118

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFEN 189
               +LA +G+   ++       +    +   F    +  S   +D A       
Sbjct: 119 GLRQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALTQQAAT 173



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 7/119 (5%)

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSL 332
              + + D     +  G  F   A+E  +  +       LG F  +          +  L
Sbjct: 308 AQAKAKIDTIRARIVGGADFQATAKESSEDTNSRGQGGDLGWFPADAF-GPDFGKQVEGL 366

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           A  G  +       G+ I      + +   S +  +  +   +   K  E+     + L
Sbjct: 367 A-DGAVSEPFRTQAGWHIVQRVGSRQTDV-SAENQRAQVRETIGRRKLEEEYNRYLQEL 423


>gi|167033795|ref|YP_001669026.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           GB-1]
 gi|166860283|gb|ABY98690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           GB-1]
          Length = 91

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++     EA++  Q +  G+ F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKTADEAEKLKQRIANGEAFDVLAKKFSLCPSGKRGGDLGEVRPGQMVG-AIDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
            IF    +      I   FGY +  
Sbjct: 63  VIFKKPLR-VVHGPIKSKFGYHLVQ 86


>gi|257886569|ref|ZP_05666222.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,141,733]
 gi|257822623|gb|EEV49555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,141,733]
          Length = 303

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 71/193 (36%), Gaps = 16/193 (8%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +S  +V+          + +        FE++  D   ++ + V +  D +   L   F+
Sbjct: 36  ISEQEVMDSLKKMQGADSTVQQLIVYQVFEDKYGD--DVSTKEVDSQYDQTKKQLGDSFD 93

Query: 219 KY-KDNYRAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
              K      E  +  I   L      +K I++++++L+  ++              + +
Sbjct: 94  SQLKTAGYTEETFKDSIKQSLAFQEGLKKHIKLTDEDLKTAWKTFHP------EVEAQII 147

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIPDVSLADSIFS 331
              ++ +A +  ++  KG  F +LA+++    +    G   K           + ++ F 
Sbjct: 148 QVASENDAKDVKKAADKGDDFSKLAKDKSTDTTTKEDGGKVKFDSTTTTVPTEVKEAAFK 207

Query: 332 LAKKGDFTPVIHG 344
           L K G  + VI  
Sbjct: 208 L-KDGQVSDVITS 219


>gi|296327933|ref|ZP_06870468.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154889|gb|EFG95671.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 563

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 80/625 (12%), Positives = 186/625 (29%), Gaps = 81/625 (12%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINS 59
           +   RK  + ++  I  VV  +     G      S +   +   + + +  +       +
Sbjct: 3   IRKFRKKMKPFII-ILTVVFILSLAYGGYESYRTSRANKKAQEAMLLNKDYIQKIEIERA 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +               S+R     +D    ++++         +D+ ++     V    
Sbjct: 62  KQDLSRTY---------SDRVDKELVDILAFNDVIDKNLTLHIAKDLKVKVPSSEVNK-- 110

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
            +             + F   L   G+ +    +   + L        F   + P++  +
Sbjct: 111 -QYEELESSMG--DKEQFRRMLQVRGLTKDSLKNQIEENLLMQKTREEFAKNINPNDEEI 167

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           D     Y          +N        +     L +  ++ K    APEY+ +   L   
Sbjct: 168 DAYMALYSIPSDKREDAVNLYKTEKGTEAFREALLKARKEMKIKDLAPEYENL---LEKT 224

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
             +E+   I+N +L            +  +   +++    +    +A + + +  K  ++
Sbjct: 225 AYEEEGFTITNLDLAR---------ATANVMLGQKI--SKEDAEKQAKEMISRQIKMAKI 273

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSI-------------FSLAKKGDFTPVIHGSF 346
           A+E+G  +++ +L S S+     V LA+ +             F  A +  ++       
Sbjct: 274 AKEKGVKVNE-NLDSISQFQDYYVGLAEKVRDEVKPTDDELMKFFNANREKYSIPATADA 332

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
             V   V + K               + +   KA + + E     E F   G ++     
Sbjct: 333 KLVFISVKSAKED-------------DDLAKEKAEKLLSELTP--ENFTEKGKTLGN--- 374

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
            + I+  DL          + +E         ++ +V                +     V
Sbjct: 375 NQDIIYQDLGTFGTKAMVKEFEEALKDVPSNTVVNKVIKTKFGYHVALVKENNNNRQWGV 434

Query: 467 QIKESIP-ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
           +    +P   ++              T K  +    KA+      +   K   D  ++  
Sbjct: 435 EHILIVPYPSEKT------------VTEKLEKLNKIKADIEAGTLALNDKIDEDAIQSFD 482

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
           A  +T + I      +  +  +    VFS  +  V      N  + ++F+ T        
Sbjct: 483 AKGITPDGI----IPDFVYSPEIAKAVFSTELNKVGIIN-PNKATIIIFQKTKEVKAENA 537

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYL 610
             DK    +        +   ++ L
Sbjct: 538 NFDKSKEQVKSDYVNKKVAEYMSKL 562


>gi|186681350|ref|YP_001864546.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
 gi|186463802|gb|ACC79603.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
          Length = 260

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 75/203 (36%), Gaps = 26/203 (12%)

Query: 201 HVPAIADPSN-AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
                   ++     +W +    +Y        + + F    ++ K  ++  ++Q  + +
Sbjct: 65  DFRLKNQLTDPQSFQEWLKTNNTDYAT----FHTSVTFGYKLEKLKAVVTEPKIQEYFIE 120

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFS 316
            K      +   + ++V  N++ ADE    +++G  F QLA+E   S     +  +G  S
Sbjct: 121 RKIFL---DRIVLSRIVVNNRELADELQTQIEEGGSFEQLAKEYSLSDDRIVNGMMGIVS 177

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIH--------GSFGYVIAHVSNIKPSFTVSFQEVK 368
           +  +PD  +  +   +A  G     I         G   Y +  V    P+   S ++  
Sbjct: 178 RGSMPD--ILRAAIDVASPGQLIGPIEIVGKDSPQGEGPYGLFRVEQFLPA---SLED-- 230

Query: 369 KDIANQMRITKASEKVKEDYKRL 391
             +   ++     + + E  ++L
Sbjct: 231 TQLKQALQNELFEKWLAEKIQKL 253


>gi|312887559|ref|ZP_07747153.1| hypothetical protein MucpaDRAFT_3495 [Mucilaginibacter paludis DSM
           18603]
 gi|311299929|gb|EFQ77004.1| hypothetical protein MucpaDRAFT_3495 [Mucilaginibacter paludis DSM
           18603]
          Length = 542

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 111/349 (31%), Gaps = 37/349 (10%)

Query: 45  SVG-RQKVPFSSFINSW-KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG---ATL 99
           +V     +      +++    +  + Q        E+AR   + +++L  L       + 
Sbjct: 186 TVNTGDVIGPVETEDAYITAHVTSVRQVNQEPYEKEKAR---IKQELLLGLTQKSNWESQ 242

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV----FVSRLAREGINEKEYIDHY 155
            +   +  LE D   +    ++             ++    +     R   +  ++ +  
Sbjct: 243 KRIFNEAKLEMDDAAIKELTSKFNAREKSWPGVDPELVLASYKLGSKRIKYSVSDFKEFV 302

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
                      MF+G +     +    + F  E        L    +      +      
Sbjct: 303 NNE-------PMFMGSLSAPEDVKKMLRTFITEQ------YLFAEALQMNIQANEE---- 345

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
            + ++   YR  E   + Y     +    KI I   E++  Y K+   +   E  TV   
Sbjct: 346 -YRQFTQGYR--EKIFVEYYKR--NHIYPKISIQPKEVEDYYSKHNNNFRVFESATVSVY 400

Query: 276 VFPNQKEADEAFQSL-KKGKKFIQLAEEQG-KSLSDISLGSFSKEYIPDVSLADSIFSLA 333
            F + +EA      L  K +  +   +  G  SL    +    K+   D  L  +I SL 
Sbjct: 401 KFRDIREAYHQRMVLSAKARDMVAPKKNIGVNSLLATDIEVNIKDQSNDPKLIKAILSLP 460

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             G  +  I     Y +  VS+ K   T+     K++I   ++  K  +
Sbjct: 461 -PGQISAPIELKGEYWLISVSSRKGLITLPLSYAKEEITRVLQSQKEKQ 508



 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 93/254 (36%), Gaps = 23/254 (9%)

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW-----FEKYKDNYRAPEYKRISYILF 237
             F  + ++  Y +L ++ +       +  +  +     ++   D  +  EY   +Y+  
Sbjct: 38  TEFELKRKAERYKLLTDQALEDKL-IEDGRIVAFALDHGYDTISDLNKLTEYASRAYVAS 96

Query: 238 DVHEK-----EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
                     +   ++++  ++  Y K  + Y       +E + FP++  +D+      K
Sbjct: 97  TDRSLLNGKVKPDFQLTDKAIKEAYLKRSQVYL------LEVIWFPSKNLSDKYQA---K 147

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            K F  + ++      +I + + S ++                GD    +     Y+ AH
Sbjct: 148 AKDFNIIKQKVSGD-KNIKIFNISLQFPYYPLSVYRRIDTVNTGDVIGPVETEDAYITAH 206

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V++++      +++ K  I  ++ +    +   E  KR+     L   MD+ + +E    
Sbjct: 207 VTSVRQVNQEPYEKEKARIKQELLLGLTQKSNWESQKRIFNEAKL--EMDDAAIKELTSK 264

Query: 413 IDLPLVDFAGKDVK 426
            +     + G D +
Sbjct: 265 FNAREKSWPGVDPE 278


>gi|294338772|emb|CAZ87106.1| putative peptidyl-prolyl isomerase [Thiomonas sp. 3As]
          Length = 274

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 7/167 (4%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           +R +          +   IS + ++  YEK+     + +   +  +V    +EA     +
Sbjct: 89  RRQALAQLSAEAFLQAHPISQEAIRQAYEKHIADLPTRQYW-LRWIVVKTPEEAKRVLDA 147

Query: 290 LKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           L+ GK  F  LA       +     +LG  S++ +    L   +    + G     I   
Sbjct: 148 LRGGKQTFTALALHHSIGQNAELGGALGWQSEQAMSAEVLG--VVRKLQPGQVAGPIALG 205

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               I  +   +      F+++K  I  Q+R       V+E  K  +
Sbjct: 206 ENLAIIQLVAERTPPKPDFEQLKPQIEQQLRQAALQAHVQELAKNAK 252


>gi|68249060|ref|YP_248172.1| survival protein SurA-like protein [Haemophilus influenzae
           86-028NP]
 gi|68057259|gb|AAX87512.1| survival protein SurA homolog [Haemophilus influenzae 86-028NP]
          Length = 313

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/390 (12%), Positives = 112/390 (28%), Gaps = 118/390 (30%)

Query: 21  LFVPFLIWGLSDALFSV---SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           +   FL+  L    F+    +    V +V    +  S            +   +G   + 
Sbjct: 7   ILKSFLLATLGCVAFTSMAQAEERVVATVDGIPILES-----------QVRANMGKKGD- 54

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
                    +  LD ++    + + I++ G++ D   +   +  +       N  ++  F
Sbjct: 55  --------RQSALDKIIDDLLVQKAIQESGVKIDPREIDRVVEDTAA----RNGLTYGQF 102

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
           +  L  +GI+   +         R  +    V G                         +
Sbjct: 103 LDALDYQGISLNTF---------RQQIANQMVMGA------------------------V 129

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
            N+ +    D +   +    +K               +L +   +    +++  E    Y
Sbjct: 130 RNKAIQESIDVTREEVVALGQK---------------MLDEAKSQGTAQKVTGKE----Y 170

Query: 258 EKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSL-----KKGKKFIQLAEEQGKSL 307
           E             V  ++       N  +A +    +          F   A +  K  
Sbjct: 171 E-------------VRHILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDY 217

Query: 308 SDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              + G       P+      A ++   +K+G  +      FG+ I  V+ ++       
Sbjct: 218 LSGANGGSLGYAFPETYAPQFAQTVMK-SKQGVISAPFKTEFGWHILEVTGVRDG----- 271

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEF 394
                D+  +    KA E++     +L++ 
Sbjct: 272 -----DLTAEAYTQKAYERLVN--TQLQDA 294


>gi|29349254|ref|NP_812757.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570400|ref|ZP_04847809.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6]
 gi|29341162|gb|AAO78951.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840781|gb|EES68863.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6]
          Length = 514

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 10/164 (6%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
           P+  T   L    Q   D  +Q ++   G  F +L +             + +       
Sbjct: 136 PQTITSRHLQ-EEQARMDSIYQVIQNQPGVDFARLVDRFSDD----KRCRWIESLQTTSE 190

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             ++ FSLAK G+ +       G  I  V + K     +++ V   + N++R     +  
Sbjct: 191 FEEAAFSLAK-GEISKPFFTPEGIHILKVIDRKE--VPAYEVVSDSLLNRLRRQPLDKGT 247

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
           +   ++L++      +M+ +    +    +  L    G+   G+
Sbjct: 248 EAIVEQLKKEYQYIPNMESLEEVLQKGGTERTLFTIDGQAYTGE 291


>gi|154298944|ref|XP_001549893.1| hypothetical protein BC1G_11719 [Botryotinia fuckeliana B05.10]
 gi|150857624|gb|EDN32816.1| hypothetical protein BC1G_11719 [Botryotinia fuckeliana B05.10]
          Length = 124

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 8/106 (7%)

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSF 315
           +  + K    +   V  ++     +  EA Q L+ G  F  +A E  +    +  +LG  
Sbjct: 21  DAKETKVKGAQQINVRHILCSKHSKMTEALQKLEAGASFDSVAREMSEDKARAGGALGWK 80

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
            +  + D       F + +               FGY I  V   K
Sbjct: 81  GRGDL-DAEFEKVAFEM-EASTTAKPKYREVKTGFGYHILMVEGRK 124


>gi|157827644|ref|YP_001496708.1| hypothetical protein A1I_06775 [Rickettsia bellii OSU 85-389]
 gi|157802948|gb|ABV79671.1| hypothetical protein A1I_06775 [Rickettsia bellii OSU 85-389]
          Length = 294

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 18/193 (9%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            K  L+++ V F    +++       S+ V  V  + +  + F    K  +      +  
Sbjct: 1   MKKLLLIITVFFTCSAVAE------TSNIVALVNNEPITLNEFRARKKMIMA-----LNN 49

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
           V     A++  L    + +L+  + L Q+  D   E     +   I          NK  
Sbjct: 50  VEEVTPAQNKQLSDIAIKSLIDESLLFQYYGDK--EISQEEIDNAIKSIE----DRNKMP 103

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SV 192
           H   +  L    +N   +I      L + +V+      ++ SN  +D A     +    V
Sbjct: 104 HGSLLQYLKSISVNPDSFISQIKSELIKMNVLSGLSRSVQVSNKEIDVAILSSDQKEVEV 163

Query: 193 DYIVLNNRHVPAI 205
              +  ++     
Sbjct: 164 SMQIFTSKDKSDK 176


>gi|225375916|ref|ZP_03753137.1| hypothetical protein ROSEINA2194_01552 [Roseburia inulinivorans DSM
           16841]
 gi|225212237|gb|EEG94591.1| hypothetical protein ROSEINA2194_01552 [Roseburia inulinivorans DSM
           16841]
          Length = 333

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 26/177 (14%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNK--------------EKYFSPEIRTVE- 273
                Y      ++   + +S  +++  YE                 E+    E R +E 
Sbjct: 125 QAAEEYFASLTEDETAYMGVSESDIKEYYEHYALAQKVYHSLTKAVNEEVSDDEARVMEI 184

Query: 274 -QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
            Q+   ++  A+E    L +G+ F  LA    + L  I + + S++ +P  ++ +  F +
Sbjct: 185 MQIFVSDESRANEIASRLAQGEDFATLANNYNE-LGSIQV-NISRDDLP-AAVEEIAFQM 241

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
            +  + +  I    G+      N         QE+ +     +   +  E   ++Y 
Sbjct: 242 -ENDEVSGKITVDGGFYFIKCLNKYN------QELTEANKANIVDKREKEAFDDEYN 291


>gi|145608650|ref|XP_001408826.1| hypothetical protein MGG_12826 [Magnaporthe oryzae 70-15]
 gi|145016097|gb|EDK00587.1| hypothetical protein MGG_12826 [Magnaporthe oryzae 70-15]
          Length = 126

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFS 316
           K ++K  + +   V  ++     + +EA Q ++ G KF ++A E  +       +LG  +
Sbjct: 24  KEEKKVKAAQQINVRHILCEKHSKKEEALQKIRDGAKFDEVAREYSEDKGRQGGALGWKA 83

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           K  +         ++L +    +          FGY I  V   K
Sbjct: 84  KGTL-KAEFEAVAYTL-EPSTTSNPKIGEAKTGFGYHIIMVEGRK 126


>gi|294497317|ref|YP_003561017.1| putative lipoprotein [Bacillus megaterium QM B1551]
 gi|294347254|gb|ADE67583.1| putative lipoprotein [Bacillus megaterium QM B1551]
          Length = 264

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 9/154 (5%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           V    TV  V  +KV    +  +         Q      + E A+   + ++ +DNLV  
Sbjct: 65  VDEKKTVAVVNGKKVSGEEYNAALSSSQAQYQQMGQDPTSKEAAKQ--VKQQTIDNLVGQ 122

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARS-PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
             L Q  E+ G +A    V  ++  +   F           F + L   G+ + +     
Sbjct: 123 TLLLQEAENKGYKATDEEVNKKLKETKKQFKT------DKQFKAALKDAGLTQSQLKSEL 176

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
              +     V   +     ++  +      + + 
Sbjct: 177 ADSIKYQQYVDKDIQTPEVTDKEIQDYYDQFAKQ 210


>gi|226944969|ref|YP_002800042.1| peptidyl-prolyl cis-trans isomerase [Azotobacter vinelandii DJ]
 gi|226719896|gb|ACO79067.1| peptidyl-prolyl cis-trans isomerase [Azotobacter vinelandii DJ]
          Length = 92

 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++  ++ EA    Q L  G+ F +LA       S      LG      +    +   
Sbjct: 6   ARHILLASEAEAARLKQRLAGGEDFARLARRHSLCPSGKRGGDLGEIRPGQLV-RPIDQV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHV 353
           IF  A + +    +   FGY +  V
Sbjct: 65  IFRKALR-EIHGPVKSQFGYHLVQV 88


>gi|225075435|ref|ZP_03718634.1| hypothetical protein NEIFLAOT_00440 [Neisseria flavescens
           NRL30031/H210]
 gi|224953253|gb|EEG34462.1| hypothetical protein NEIFLAOT_00440 [Neisseria flavescens
           NRL30031/H210]
          Length = 254

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 77/204 (37%), Gaps = 21/204 (10%)

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
            R     VL N  + A  D  +A +   F+  +  +         Y        E++  +
Sbjct: 65  TRLQTLEVLKNEAIKAGLD-KDAEVQNQFKNVEAEF---------YANQYAAYLERQTAV 114

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
            + EL+  Y++         I  ++Q+ F + +E   A + L KG  F +L +       
Sbjct: 115 DDAELRRFYDQQTR------IIKLQQVSFASAEEVRAAQELLLKGLSFEELMKRYPNPEQ 168

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGYVIAHVSNI-KPSFTVSFQE 366
           +   G  S + +P      + F+   +GD T   I     + +  +S + +      F+ 
Sbjct: 169 EFD-GFISPQQLPPQLA--TAFADMNRGDVTHEPIQMENRFYLFKLSAVERNPNAEPFEL 225

Query: 367 VKKDIANQMRITKASEKVKEDYKR 390
           V+  IA  ++  K   +++   K 
Sbjct: 226 VRNQIAQAVKRQKVENQIERILKE 249


>gi|302508515|ref|XP_003016218.1| hypothetical protein ARB_05616 [Arthroderma benhamiae CBS 112371]
 gi|291179787|gb|EFE35573.1| hypothetical protein ARB_05616 [Arthroderma benhamiae CBS 112371]
          Length = 150

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           + +EA + L+ G KF  +A E  +  +    SLG   +  + D +   + + L +     
Sbjct: 71  KKEEALEKLRAGAKFDDVAREFSEDKARQGGSLGWKVRGSL-DAAFEKAAYEL-EPSTTG 128

Query: 340 PVI----HGSFGYVIAHVSNIK 357
                     FGY I  V   K
Sbjct: 129 NPKYVEVKTGFGYHIIMVEGRK 150


>gi|119952845|ref|YP_945054.1| hypothetical protein BT0039 [Borrelia turicatae 91E135]
 gi|119861616|gb|AAX17384.1| hypothetical protein BT0039 [Borrelia turicatae 91E135]
          Length = 497

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 112/365 (30%), Gaps = 76/365 (20%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWK 61
                      + L+V+   F+I  L   LF  + SS++   G    Q V +    N + 
Sbjct: 17  FNDKKVGTWGLLALIVIVFGFIIAPLMPGLFDTTDSSSL-KFGSYKGQPV-YYEKDNKFA 74

Query: 62  QELGMISQKIGFVVNSERARSVGLD------KKILDNLVSGATLDQFIEDIGLEADHGRV 115
           Q +   S        S+  ++  LD             V         +          +
Sbjct: 75  QYVKSYS-----NFYSKLKKNNSLDIEYFIWNLAFMKYVEDIAFIDLAKTNSFYVSKNIL 129

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
              +  SP++      FS   +          + +  +     L  +++  +        
Sbjct: 130 NKNLMNSPVYLDSSGNFSPKRYNKV---SDYQKFKIHNETVDNLLSSNIQVLLSSSFILP 186

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
           + LL+  K      R++ Y+ L+ +  P     S      + ++ +  +++ +   I + 
Sbjct: 187 DSLLNAIKSMNEIRRNIVYVSLSYQDFPKDKVIS------YADQNQKLFKSLDIVSIRFK 240

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                                                         +A  A++ L KG  
Sbjct: 241 NLS-------------------------------------------DAGGAYEKLSKGMP 257

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSL-----AD--SIFSLAKKGDFTPVI-HGSFG 347
           F ++A+   + +++    + SK+Y  D+ L      D  +IFSL      +P+      G
Sbjct: 258 FEEVAKFYSEDVTNFKGIASSKKYYFDLDLVLEKKEDLAAIFSLKMNEFTSPIKSKNGNG 317

Query: 348 YVIAH 352
           Y I  
Sbjct: 318 YDIYK 322


>gi|291286198|ref|YP_003503014.1| SurA domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883358|gb|ADD67058.1| SurA domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 310

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/354 (11%), Positives = 88/354 (24%), Gaps = 87/354 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +     VG + +          + L  I +        E      +    LD L +   +
Sbjct: 28  NRVYAVVGEKVITQYELETLNPKRLQYIYKNFEGDKREEELNKYYV--AALDMLTNNYVI 85

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +Q     G+      V G +        + N    D     LA      ++Y       +
Sbjct: 86  EQAAAREGVRVSSREVDGAVKEI----IEKNSIDEDKLSELLAASNQTMEQYKWSIKIDI 141

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            +  ++                                           +   + ++ E 
Sbjct: 142 LKARLMSTV---------------------------------FRPKIIITEDDIKKYVEA 168

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                                           EL   YE             +  +   N
Sbjct: 169 NAAAL---------------------------ELSDMYE-------------LRIMTVDN 188

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           +++ D+A    K    F     +    G + +   LG     ++ D  + ++I    KKG
Sbjct: 189 KEQLDKALADFKDTGDFRSTVMKFSTSGNADNGGYLGWVELAFLDD-EIRNTIAG--KKG 245

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
             T  +     Y + +V   K    V+  + +  I   ++  ++ E        
Sbjct: 246 -LTEPLEDHGSYRVFYVEGFKNKDNVTGDK-RDSIVKTLQEERSKEIFDNWLAE 297


>gi|16272406|ref|NP_438619.1| stationary-phase survival protein SurA [Haemophilus influenzae Rd
           KW20]
 gi|260580479|ref|ZP_05848307.1| stationary-phase survival protein SurA [Haemophilus influenzae
           RdAW]
 gi|1174486|sp|P44721|SURA_HAEIN RecName: Full=Chaperone surA homolog; Flags: Precursor
 gi|1573432|gb|AAC22116.1| stationary phase survival protein SurA, putative [Haemophilus
           influenzae Rd KW20]
 gi|260092821|gb|EEW76756.1| stationary-phase survival protein SurA [Haemophilus influenzae
           RdAW]
          Length = 313

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/368 (11%), Positives = 103/368 (27%), Gaps = 115/368 (31%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V +V    V  S            +   +G   +          +  +D ++    +
Sbjct: 29  ERVVATVDGIPVLES-----------QVRANMGKKGD---------RQSAIDKIIDDILV 68

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            + +++ G++ D   +   I          N  ++  F+  L  +GI+   +     + +
Sbjct: 69  QKAVQESGVKIDPREI-DHIVEDTA---ARNGLTYGQFLDALDYQGISLNTF----RQQI 120

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +   V+G                                 + +    D +   +    +K
Sbjct: 121 ANQMVMGAVRN-----------------------------KAIQESIDVTREEVVALGQK 151

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278
                          +L +   +    +++  E    YE             V  ++   
Sbjct: 152 ---------------MLDEAKSQGTAQKVTGKE----YE-------------VRHILLKL 179

Query: 279 ----NQKEADEAFQS-----LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLA 326
               N  +A +         +     F   A +  K     + G       P+      A
Sbjct: 180 NPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFA 239

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            ++   +K+G  +      FG+ I  V+ ++            D+  +    KA E++  
Sbjct: 240 QTVVK-SKQGVISAPFKTEFGWHILEVTGVRDG----------DLTAEAYTQKAYERLVN 288

Query: 387 DYKRLEEF 394
              +L++ 
Sbjct: 289 --TQLQDA 294


>gi|255079356|ref|XP_002503258.1| peptidyl-prolyl cis-trans isomerase [Micromonas sp. RCC299]
 gi|226518524|gb|ACO64516.1| peptidyl-prolyl cis-trans isomerase [Micromonas sp. RCC299]
          Length = 216

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 11/104 (10%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKK------FIQLAEEQGKSLS---DISLGSFSKE 318
           E  T   ++  +   A    + L+ G +      F + A    +  S     SLG+F   
Sbjct: 115 EEATASHILVKDPSLAQSLLERLQDGPQDNLEDRFAREAGNYSECPSKSKGGSLGTFKPG 174

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
            +      D++F+    G     +   FGY +  V++       
Sbjct: 175 QMVK-EFNDAVFN-GPVGVIQGPVKTQFGYHLILVTDRVEPEKK 216


>gi|209884190|ref|YP_002288047.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
           carboxidovorans OM5]
 gi|209872386|gb|ACI92182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
           carboxidovorans OM5]
          Length = 274

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 70/208 (33%), Gaps = 27/208 (12%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------- 279
           E    + +   V  + K  E      +  YE++ +++ + ++  V  ++           
Sbjct: 78  ETAEEAAMRALVEREVKTPEPDEATCRRFYEQHLQRFRTGDLYEVAHILIAASRGDEAAR 137

Query: 280 ---QKEADEAFQSLKKGKK-FIQLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFS 331
              +  A+    ++K     F  +A         +     LG  ++          ++  
Sbjct: 138 LAARASAETILAAVKADPHVFADMASNHSACSTSAAEGGRLGQITRGQTV-PEFE-AVLE 195

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             + G+   +    +G+ +  +       T+ F+  K+ IA  +  +     + +     
Sbjct: 196 RMQPGEI-AIAETRYGFHVVRMDRRAEGQTLPFELAKERIAGYLAASVEHRALAQYIS-- 252

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVD 419
              LA    +  I+    +V+ D PLV 
Sbjct: 253 --ILAGQAEITGIA----LVAADTPLVQ 274


>gi|188995416|ref|YP_001929668.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
           gingivalis ATCC 33277]
 gi|188595096|dbj|BAG34071.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 460

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/346 (13%), Positives = 100/346 (28%), Gaps = 85/346 (24%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           ++ +  L W L            V  VG + +  S    + +           F+++S R
Sbjct: 10  IIMLSLLFWALPSMGQKNVIDEVVWMVGDEPILRSDIEATKR-----------FLLSSGR 58

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                 D  I + +          +   +E +   V   +               D++++
Sbjct: 59  PLEGNADCYIPEQIAVQKLFLNQAKIDSIEVNEADVNRYV---------------DMYLA 103

Query: 140 -RLAREGINE--KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
             + + G  E  +EY +     +     V                      E R+ + + 
Sbjct: 104 DYIQQFGSKEKMEEYFNRKYTQIREEQRV----------------------EVRNSEIVR 141

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
           +  + +      + + + Q+F     +               +      +E+    ++  
Sbjct: 142 MMRKKIDENVKVTPSEIRQYFASLPQD--------------SLPYIPTTVEVQLLAIKPV 187

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLA----EEQGKSLSDIS 311
              ++       +R                   + +G+  F  LA    E+   +L    
Sbjct: 188 ISLHETDAIKKRLREFS--------------DEINEGRRDFTTLARLYSEDSKTALQGGE 233

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            G  SK  + D   A  +FSL      +P+I    GY I  +   +
Sbjct: 234 YGFVSKASL-DAEFARVVFSLTDTKRVSPIIKTDDGYHIVQLIEKR 278


>gi|256959822|ref|ZP_05563993.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis Merz96]
 gi|256950318|gb|EEU66950.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis Merz96]
          Length = 342

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 84/262 (32%), Gaps = 30/262 (11%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIVLNNRHVPA 204
           I   ++ +   +  +        V          D+      + +       +  +    
Sbjct: 36  ITVDDFYNQIKEQSTSQQAFSQMVIYKVFEEKYGDKVTDKAIQKKFDDAKKQVEAQGGKF 95

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
               + A LT+  + +K   +  E  ++          +  ++I++++L+  +       
Sbjct: 96  SDALTQAGLTE--KSFKKQLKQAEAMQV--------GLKDHLKITDEDLKTAWASFHP-- 143

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYI 320
                   + +   ++ +A    + +  G  F ++A+++    +    G      S+   
Sbjct: 144 ----EVEAQIIQVASEDDAKAVKKEITDGGDFAKIAKDKSTDAATKKDGGKIKFDSQSTT 199

Query: 321 PDVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDIA 372
               + ++ F L K G+ +              Y +  ++  K        +++  K IA
Sbjct: 200 VPAEVKEAAFKL-KDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIA 258

Query: 373 NQMRITKASEKVKEDYKRLEEF 394
            + ++   + + K     L+  
Sbjct: 259 EETKLADQTFQAKVISDELKAA 280


>gi|255639033|gb|ACU19817.1| unknown [Glycine max]
          Length = 291

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 18/165 (10%)

Query: 267 PEIRTVEQLVFP--NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIP 321
           P    V+ L+    +QK      Q +  G+    LA E     S      LG   K  + 
Sbjct: 83  PREILVQHLLVKEDDQKLLLYLQQKISSGEDLSDLAVEYSLCPSKEEGGMLGWVRKGQMV 142

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                ++ F+              FG+ +  V            E ++ I   ++  +  
Sbjct: 143 -PEFEEAAFTAPLNQVVR--CKTKFGWHLLQV----------LSEREESILQDIQPDELH 189

Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
            K+++     E  L      DE+++        LPL  F     +
Sbjct: 190 MKIQDPSFLDEAQLIDVREPDEVAKASLPGFTVLPLRQFGSWGPE 234


>gi|240113769|ref|ZP_04728259.1| hypothetical protein NgonM_09436 [Neisseria gonorrhoeae MS11]
 gi|240128939|ref|ZP_04741600.1| hypothetical protein NgonS_10017 [Neisseria gonorrhoeae SK-93-1035]
 gi|268599841|ref|ZP_06134008.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268687325|ref|ZP_06154187.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268583972|gb|EEZ48648.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268627609|gb|EEZ60009.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 252

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 81/235 (34%), Gaps = 21/235 (8%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
                 ++         S     QA R     R     VL NR +    D  +  +   F
Sbjct: 32  DTLVAQIMQQADRHAEQSQRPDGQAIRNDAVRRLQTLEVLKNRALKEGLD-KDKDVQNRF 90

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +  + ++ A EY R           E+   +S   L+  YE+            ++Q+ F
Sbjct: 91  KIAEASFYAEEYVRF---------LERSETVSESALRQFYERQIRMI------KLQQVSF 135

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
             ++EA +A Q L KG  F  L +           G    + +P+   +   F+   +GD
Sbjct: 136 ATEEEARQAQQLLLKGLSFEGLMKRYPNDEQAFD-GFIMAQQLPEPLASQ--FAGMNRGD 192

Query: 338 FT-PVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            T   +     Y +  +  + K      F+ V+  +   +R  KA  K+    + 
Sbjct: 193 VTRNPVKLGERYYLFKLGAVGKNPDAQPFELVRNQLEQGLRQEKARLKIDAVLEE 247


>gi|312961518|ref|ZP_07776019.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas fluorescens WH6]
 gi|311284197|gb|EFQ62777.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas fluorescens WH6]
          Length = 301

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 62/179 (34%), Gaps = 17/179 (9%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKEAD 284
           E +  +     +  + K  E         ++ N+ ++ S  +  V  ++    P+  EA 
Sbjct: 105 ENEEEAATRLLLEREVKVPECDEATCLRYFDNNRGRFHSAPLLAVRHILLECAPDDIEAR 164

Query: 285 EAFQSLK---------KGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSL 332
           +   S           +  +F +LA +           SLG  SK       L   +F+L
Sbjct: 165 DLAHSQAEVLLLSLEEQPGQFAELALKYSACPSKAQGGSLGQVSKGQTV-PELERQLFTL 223

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           A  G     +   +G+ +  V        + ++ V   I  Q++     + + +  + L
Sbjct: 224 A-PGLAGKPLESRYGWHVISVDQRIEGQPLPYEAVAVAIRTQLQQGVWQKALVQYLQTL 281


>gi|42519890|ref|NP_965820.1| peptidylprolyl isomerase [Lactobacillus johnsonii NCC 533]
 gi|46396704|sp|P60810|PRSA2_LACJO RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|41584180|gb|AAS09786.1| protease maturation protein precursor [Lactobacillus johnsonii NCC
           533]
          Length = 298

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 59/184 (32%), Gaps = 27/184 (14%)

Query: 211 AVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
             +   +  YK  Y              +    + I          +K+++ +  +L+ E
Sbjct: 77  DQVEADYNSYKKRYGSQFDSFLKENSYTKKSFKQMIELNHLSKIALKKQMKPTTSQLKEE 136

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
           ++  + K        V+ +   ++  A+   + L  G+ F  LA +        S G   
Sbjct: 137 WKDYQPKIT------VQHISTTSRDTANTVIEKLNNGESFASLASKYSVDSLTSSNGGKL 190

Query: 317 KEYIP-----DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
             +       D +     + L         I  + GY +  +  I      +F + +K++
Sbjct: 191 PAFDMQNRRYDSTFKKGAYKLKNDEYTKEPIKVTNGYEVIKM--INHPKKGNFADKQKEL 248

Query: 372 ANQM 375
              +
Sbjct: 249 TEAI 252


>gi|325126170|gb|ADY85500.1| PrtM precursor [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 307

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 65/190 (34%), Gaps = 17/190 (8%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
             S+  +   + KYK  Y +     +S         ++ +  +N  L A  +  ++   +
Sbjct: 74  KVSSKKINAEYNKYKKQYGSSFSTVLSSSGLTTKSFKQNLA-TNLYLVAALKDLEKPTTT 132

Query: 267 PEIR---------TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL----- 312
            E           TV+ +V   +  A+   + LK G  F  LA++     +         
Sbjct: 133 QEKNWWKSYHTKTTVQHIVVAKKSTAETVIKKLKSGTSFATLAKKYSTETATKKKAGKMA 192

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              S +     +   +++ L +    T  +    GY +  V         S+ + K  I 
Sbjct: 193 AFDSTDTSLSSTFKSAVWKLKEGEYTTTPVKTLSGYEVIKVLKTTEKG--SYTKNKSFID 250

Query: 373 NQMRITKASE 382
            Q+    A++
Sbjct: 251 KQLYAKWAAD 260


>gi|257083614|ref|ZP_05577975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis Fly1]
 gi|256991644|gb|EEU78946.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis Fly1]
          Length = 336

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 80/245 (32%), Gaps = 30/245 (12%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV-LNNRHVPA 204
           I   ++ +   +  +        V          D+      + +  D    +  +    
Sbjct: 40  ITVDDFYNQIKEQSTSQQAFSQMVIYKVFEEKYGDKVTDKAIQKKFDDAKKQVEAQGGKF 99

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
               + A LT+  + +K   +  E  ++          +  ++I++++L+  +       
Sbjct: 100 SDALTQAGLTE--KSFKKQLKQAEAMQV--------GLKDHLKITDEDLKTAWASFHP-- 147

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYI 320
                   + +   ++ +A    + +  G  F ++A+++    +    G      S+   
Sbjct: 148 ----EVEAQIIQVASEDDAKAVKKEITDGGDFAKIAKDKSTDAATKKDGGKIKFDSQSTT 203

Query: 321 PDVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDIA 372
               + ++ F L K G+ +              Y +  ++  K        +++  K IA
Sbjct: 204 VPAEVKEAAFKL-KDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIA 262

Query: 373 NQMRI 377
            + ++
Sbjct: 263 EETKL 267


>gi|104774371|ref|YP_619351.1| peptidylprolyl isomerase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514466|ref|YP_813372.1| peptidylprolyl isomerase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423452|emb|CAI98333.1| Putative peptidylprolyl isomerase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093781|gb|ABJ58934.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 303

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 65/190 (34%), Gaps = 17/190 (8%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
             S+  +   + KYK  Y +     +S         ++ +  +N  L A  +  ++   +
Sbjct: 74  KVSSKKINAEYNKYKKQYGSSFSTVLSSSGLTTKSFKQNLA-TNLYLVAALKDLEKPTTT 132

Query: 267 PEIR---------TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL----- 312
            E           TV+ +V   +  A+   + LK G  F  LA++     +         
Sbjct: 133 QEKNWWKSYHTKTTVQHIVVAKKSTAETVIKKLKSGTSFATLAKKYSTETATKKKAGKMA 192

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              S +     +   +++ L +    T  +    GY +  V         S+ + K  I 
Sbjct: 193 AFDSTDTSLSSTFKSAVWKLKEGEYTTTPVKTLSGYEVIKVLKTTEKG--SYTKNKSFID 250

Query: 373 NQMRITKASE 382
            Q+    A++
Sbjct: 251 KQLYAKWAAD 260


>gi|307200199|gb|EFN80493.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
           [Harpegnathos saltator]
          Length = 151

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 27/111 (24%)

Query: 267 PEIRTVEQLVFP-----------------NQKEADEA----FQSLKKGK-KFIQLAEEQG 304
           PE      L+                   +++EA E      + +  GK  F +LA +  
Sbjct: 40  PEEVQCSHLLVKHSGSRRPSSWREDNITRSKEEALELVKSFREQIASGKATFAELASKYS 99

Query: 305 ---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
               +     LG FS+  +       + F+L K G+ +  +H   G  I  
Sbjct: 100 DCSSAKRGGDLGPFSRGAMQKP-FEQAAFAL-KVGELSSPVHTDSGIHIIQ 148


>gi|260582276|ref|ZP_05850069.1| stationary-phase survival protein SurA [Haemophilus influenzae
           NT127]
 gi|260094644|gb|EEW78539.1| stationary-phase survival protein SurA [Haemophilus influenzae
           NT127]
          Length = 313

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/380 (11%), Positives = 110/380 (28%), Gaps = 98/380 (25%)

Query: 21  LFVPFLIWGLSDALFSV---SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           +   FL+  L    F+    +    V +V    +  S            +   +G   + 
Sbjct: 7   ILKSFLLATLGCVAFTSMAQAEERVVATVDGIPILES-----------QVRANMGKKGD- 54

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
                    +  +D ++    + + +++ G++ D   +   I          N  ++  F
Sbjct: 55  --------RQSAIDKIIDDILVQKAVQESGVKIDPREI-DHIVEDTA---ARNGLTYGQF 102

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
           +  L  +GI+   +     + ++   V+G         ++ + +A+              
Sbjct: 103 LDALDYQGISLNTF----RQQIANQMVMGAVRNKAIQESIDVTRAE-------------- 144

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                  +      +L +  EK        +   + +IL  ++      +          
Sbjct: 145 -------VVALGQKMLEEAKEKGTAQKVMGKEYEVRHILLKLNPLLNDAQ---------- 187

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
                                 ++ A      +     F   A +  K     + G    
Sbjct: 188 --------------------AKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLG 227

Query: 318 EYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
              P+      A ++   +K+G  +      FG+ I  V+ ++            D+  +
Sbjct: 228 YAFPETYAPQFAQTVVK-SKQGVISAPFKTEFGWHILEVTGVRDG----------DLTAE 276

Query: 375 MRITKASEKVKEDYKRLEEF 394
               KA E++     +L++ 
Sbjct: 277 AYTQKAYERLVN--TQLQDA 294


>gi|289666150|ref|ZP_06487731.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 294

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 63/181 (34%), Gaps = 28/181 (15%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-----------------KEADEA 286
           +   I   +++A+++ +   Y   +   +  L    +                   A   
Sbjct: 120 ESARIDASQIKAQFDAHPHDY---DEVHLSHLFVALKPQGEARRGTPLTDAQALARAQRL 176

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK---GDFTPVIH 343
            Q L+ G  F +LA  +    S  + G      I   ++AD+  +  +    G  +  + 
Sbjct: 177 KQQLESGTPFAELAMRESDDGSTAAEGG-ELSPIFLRNVADAFVAPVQDLAVGQVSAPVR 235

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
           G  GY +  V   +P+   +    +  I  Q+R   A++ + E  ++         +++ 
Sbjct: 236 GPEGYHLIRVDARRPA---TLDSARGQIEVQLRDQAAADAL-EQLRQANPVRFDHAALEA 291

Query: 404 I 404
            
Sbjct: 292 A 292


>gi|332300230|ref|YP_004442151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177293|gb|AEE12983.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 472

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 104/318 (32%), Gaps = 51/318 (16%)

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI----NEKEYIDHYTKMLSRTDVV--G 166
             V   +   P+   +    +  ++   +  +G+    N   Y    T+ L+   +    
Sbjct: 44  DEVIWTVGDEPILKSE--IENQKLY---MRSQGMPLEGNPDCY---LTEQLAVQMLFLNQ 95

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
             +  +   N  +D+    + E+                   S   L ++F +   + R 
Sbjct: 96  AKIDSISVDNTKVDRFVDNFMESLVQQIG-------------SRERLEEYFNRPYSSIRE 142

Query: 227 PEYKRI---SYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQ- 280
            +         +     +  + + ++  E+++ Y +       + P++  V+ L      
Sbjct: 143 QQRIMAVNNEIVRQMQQKIIQGVAVTPTEIRSYYAQIPQDSLPYIPDVVEVQALRITPDI 202

Query: 281 --KEADEAFQSL--------KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLA 326
                D+  + L           + F  +A    +     L     G  ++  + +   A
Sbjct: 203 ELAAIDQIKEQLRSYSDDIVAGRRDFSTIARLYSQDSRTSLRGGEYGFVARSSL-EPEFA 261

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
             +F+L+     +P+I  + GY I  +   +   T++F+ +   +   +   K  + V +
Sbjct: 262 QVVFALSDTKQVSPIIRTATGYHIVQLIEKR-DNTINFRHI--LLKPSVAPDKLQQAVNK 318

Query: 387 DYKRLEEFLALGTSMDEI 404
                 +     TS DE 
Sbjct: 319 ADSVAVQVRNGKTSFDEA 336


>gi|331006497|ref|ZP_08329797.1| Peptidyl-prolyl cis-trans isomerase ppiC [gamma proteobacterium
           IMCC1989]
 gi|330419697|gb|EGG94063.1| Peptidyl-prolyl cis-trans isomerase ppiC [gamma proteobacterium
           IMCC1989]
          Length = 93

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328
              ++   +++ ++  Q ++ G  F  +A++     S      LG F++  +        
Sbjct: 6   ARHILVDTEEQCNKLKQDIEGGIAFTDIAKQHSSCPSGAQGGELGEFTQGQMV-PEFDKV 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +F+ A        +   FGY +  ++    
Sbjct: 65  VFNEALN-TVHGPVKTQFGYHLLEITARSE 93


>gi|119496701|ref|XP_001265124.1| peptidyl-prolyl cis-trans isomerase [Neosartorya fischeri NRRL 181]
 gi|119413286|gb|EAW23227.1| peptidyl-prolyl cis-trans isomerase [Neosartorya fischeri NRRL 181]
          Length = 129

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF  +A E  +  +    SLG   +  + +     + 
Sbjct: 40  VRHILCEKFSKKEEAVEKLRNGAKFDDVAREYSEDKARQGGSLGWKVRGSL-NADFEKAA 98

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           + L +               FGY I  V   K
Sbjct: 99  YEL-EPSTTANPKYVEVKTGFGYHIIMVEGRK 129


>gi|219870954|ref|YP_002475329.1| peptidyl-prolyl cis-trans isomerase SurA [Haemophilus parasuis
           SH0165]
 gi|219691158|gb|ACL32381.1| peptidyl-prolyl cis-trans isomerase SurA [Haemophilus parasuis
           SH0165]
          Length = 312

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/372 (12%), Positives = 111/372 (29%), Gaps = 86/372 (23%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +    F ++  S A    +    V +V    +  S    +                  ++
Sbjct: 9   LFIAGFALFAFSSA---NAEERVVATVDGYPIMQSQVKQAL----------------GKK 49

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           A +    K  L+ ++    + + I++ G++ D+  V   +          N  ++   + 
Sbjct: 50  ANTEANRKAALETIIDDFVVQRAIKESGIKVDYAYVDQMMEDVAA----QNGITYGQLLD 105

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L  +GI+  +Y       L    V    +G                        I ++ 
Sbjct: 106 ALDYQGISLSQYRQQLAHQLLMEQVRQQSIGNS----------------------IQVDP 143

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
           + V ++A           +K K N    E    +         +    +++ + +A+   
Sbjct: 144 KDVQSLA-------KDMLDKAKTNGTL-ETVSATEYRISHILIKTTPILNDMQAKAKLLS 195

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319
                 S       ++ F    + +                 +    +    LG F+   
Sbjct: 196 ITADIKSG------KITFEEAAKINSV---------------DYISGIDGGDLG-FNFLD 233

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
             D + A+ I S +K    +      FG+ I  V++ +          + D      + K
Sbjct: 234 AYDSTFAN-IASKSKIDVISSPFKSQFGWHILKVTDTR----------RGDRTEDAYLQK 282

Query: 380 ASEKVKEDYKRL 391
           A E++ +   ++
Sbjct: 283 AYEQLIDKQVQV 294


>gi|330809994|ref|YP_004354456.1| peptidylprolyl isomerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378102|gb|AEA69452.1| putative Peptidylprolyl isomerase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 322

 Score = 56.9 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 17/160 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKEA--------DEAFQSLKK-GK 294
           +         YE N+ ++ S  +  V  ++    P+  EA        +   + L +   
Sbjct: 145 QCDEATCLRYYESNRARFHSAPLLAVRHILLECAPDDAEARSLAHVQAELLLERLDQFPG 204

Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F +LA +     S     SLG  SK       L   +F+L   G     +   +G+ + 
Sbjct: 205 SFAELALKHSACPSKEQGGSLGQISKGQTV-PELERQLFTLP-AGLAGKPLESRYGWHVI 262

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            +        + ++ V   I  Q++     + + +  + L
Sbjct: 263 SIDQRIDGQPLPYEAVATAIRTQLQQGVWQKALVQYLQTL 302


>gi|227517652|ref|ZP_03947701.1| peptidylprolyl isomerase [Enterococcus faecalis TX0104]
 gi|227074909|gb|EEI12872.1| peptidylprolyl isomerase [Enterococcus faecalis TX0104]
          Length = 362

 Score = 56.9 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/261 (10%), Positives = 81/261 (31%), Gaps = 28/261 (10%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I   ++ +      +        V      +   ++      + +  D        + A 
Sbjct: 56  ITVDDFYNQIKGQSTSQQAFSQMVIYKVFEDKYGNKVTDKDVQKKFDD----AKEQMEAQ 111

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
                  L Q+    KD       K++          +  ++I++++L+  +        
Sbjct: 112 GAKFTDALKQYGLTEKDF-----KKQLKQTAAFQEGMKAHLKITDEDLKTAWASFHP--- 163

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIP 321
                  + +   ++ +A    + +  G  F ++A+++    +    G      S+    
Sbjct: 164 ---EVEAQIIQVASEDDAKAVKKEITDGGDFAKIAKDKSTDAATKKDGGKIKFDSQSTTV 220

Query: 322 DVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDIAN 373
              + ++ F L K G+ +              Y +  ++  K        +++  K IA 
Sbjct: 221 PAEVKEAAFKL-KDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAE 279

Query: 374 QMRITKASEKVKEDYKRLEEF 394
           + ++   + + K     L+  
Sbjct: 280 ETKLADQTFQAKVISDELKAA 300


>gi|85709482|ref|ZP_01040547.1| hypothetical protein NAP1_11393 [Erythrobacter sp. NAP1]
 gi|85688192|gb|EAQ28196.1| hypothetical protein NAP1_11393 [Erythrobacter sp. NAP1]
          Length = 262

 Score = 56.9 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 60/155 (38%), Gaps = 7/155 (4%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            + +S +        +  +  +  L+A +E N   Y      T EQ +F ++ EA  A +
Sbjct: 97  QRMVSKMDMSASLAAELADPDDTVLRAYFEANAANYAGEPSLTFEQALFADEDEARLARE 156

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           +         L +         ++G+   +       A ++  L  + ++   +   FG+
Sbjct: 157 TGAVQGTATSLPKAIN------AMGASEVQARFGEQFARNLAELEPRDEWQGPVPSGFGW 210

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
            +  ++    +   SF  V++++ N  R  + + +
Sbjct: 211 HLVRLTQRT-AKDPSFDAVREEVENDWRSAETAAR 244


>gi|104782217|ref|YP_608715.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas entomophila L48]
 gi|95111204|emb|CAK15924.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Pseudomonas entomophila L48]
          Length = 91

 Score = 56.9 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++     EA++  Q +  G+ F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKTADEAEKLKQRIANGEAFDVLAKKFSTCPSGKRGGDLGEVRPGQLVG-AIDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
            IF    +      I   FGY +  
Sbjct: 63  VIFKKPLR-VVHGPIKSKFGYHLVQ 86


>gi|241759275|ref|ZP_04757381.1| conserved hypothetical protein [Neisseria flavescens SK114]
 gi|241320411|gb|EER56708.1| conserved hypothetical protein [Neisseria flavescens SK114]
          Length = 289

 Score = 56.9 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 79/245 (32%), Gaps = 24/245 (9%)

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
              +ML+   ++   V       L LDQ+  F                         A  
Sbjct: 56  ELRQMLTERQIISTVV-TQEAKKLKLDQSAEFKTALEQAR------ADAAKQGADKKATF 108

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
              +  ++++     +              ++  +   +++A Y      Y   +   + 
Sbjct: 109 KTEWAVFENDLLGQAF---------AAHIVRQYPVQEKDVKAAYNDFSNFYKGTQEVQLG 159

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD------ 327
           ++V  +   A +A   L   K F+ +  +     +    G   K YIP   L +      
Sbjct: 160 EIV-TDSSNAQKAIADLDAKKSFVSVLNQYSIDEAAKKAGGIPKAYIPLKDLQESAPPLY 218

Query: 328 SIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +     KKG  T   +     Y + +V++ +     S++  K +I + ++  +    ++ 
Sbjct: 219 AAVKDLKKGAHTKTPLQNGNLYAVFYVNDRRNVTVPSYEAAKNEIGSDLQAARVDAAIQS 278

Query: 387 DYKRL 391
             K+ 
Sbjct: 279 LLKKA 283


>gi|221217375|ref|ZP_03588846.1| conserved hypothetical protein [Borrelia burgdorferi 72a]
 gi|221192653|gb|EEE18869.1| conserved hypothetical protein [Borrelia burgdorferi 72a]
          Length = 500

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/274 (10%), Positives = 76/274 (27%), Gaps = 37/274 (13%)

Query: 10  RTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVG---RQKV------PFS 54
           +         ++ + F         G+ D   S       +  G    Q +       F+
Sbjct: 20  KKVGMWGIFALILIVFGFIIAPLLPGIFDNAHSSG-----LKFGSYKGQPIYYKKDSKFA 74

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            ++N +      +      +     A  +   K +             ++          
Sbjct: 75  KYVNYYSNLYSRLQGNAKNINTDYNAWYLAFMKYV-----EDVAFLDLVKKYNFYISKEM 129

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   + +SP +      FS   +          + +  D   + +  +++       +  
Sbjct: 130 LNKNLLKSPEYLDSSGNFSSKRYN---KASDYQKVKIYDDMVENILFSNIKIFLNSNLIF 186

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + L D  K      R + Y+ L+ +        SN  +  + EK  + ++      I +
Sbjct: 187 PDSLFDMIKNMSTVERHISYLSLSYQDF------SNKEVISYAEKNLNLFKRLSLASIRF 240

Query: 235 ILFDVHEKEKKIEISN---DELQAEYEKNKEKYF 265
              +         ++    +EL   Y  +   + 
Sbjct: 241 KNMNDARNAHDKLLNKTPFEELAKLYSDDIANFK 274


>gi|225549707|ref|ZP_03770672.1| conserved hypothetical protein [Borrelia burgdorferi 118a]
 gi|225369667|gb|EEG99115.1| conserved hypothetical protein [Borrelia burgdorferi 118a]
          Length = 500

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/274 (10%), Positives = 76/274 (27%), Gaps = 37/274 (13%)

Query: 10  RTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVG---RQKV------PFS 54
           +         ++ + F         G+ D   S       +  G    Q +       F+
Sbjct: 20  KKVGMWGIFALILIVFGFIIAPLLPGIFDNAHSSG-----LKFGSYKGQPIYYKKDSKFA 74

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            ++N +      +      +     A  +   K +             ++          
Sbjct: 75  KYVNYYSNLYSRLQGNAKNINTDYNAWYLAFMKYV-----EDVAFLDLVKKYNFYISKEM 129

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   + +SP +      FS   +          + +  D   + +  +++       +  
Sbjct: 130 LNKNLLKSPEYLDSSGNFSSKRYN---KASDYQKVKIYDDMVENILFSNIKIFLNSNLIF 186

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + L D  K      R + Y+ L+ +        SN  +  + EK  + ++      I +
Sbjct: 187 PDSLFDMIKNMSTVERHISYLSLSYQDF------SNKEVISYAEKNLNLFKRLSLASIRF 240

Query: 235 ILFDVHEKEKKIEISN---DELQAEYEKNKEKYF 265
              +         ++    +EL   Y  +   + 
Sbjct: 241 KNMNDARNAHDKLLNKTPFEELAKLYSDDIANFK 274


>gi|148262337|ref|YP_001229043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
 gi|146395837|gb|ABQ24470.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
          Length = 93

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI--PDVSL 325
              T   ++  +++  ++  + ++ G  F  +A E     S    G   +          
Sbjct: 2   ARATARHILVASKEVCEDLKKQIEAGADFAAVAREHSSCPSGKQGGGLGEFGPGQMVKEF 61

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
             ++F+  + G     I   FGY +  V++   
Sbjct: 62  DQAVFT-GEVGKVLGPIQTQFGYHLLEVTSRTE 93


>gi|257897789|ref|ZP_05677442.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com15]
 gi|257835701|gb|EEV60775.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com15]
          Length = 303

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 71/193 (36%), Gaps = 16/193 (8%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +S  +V+          + +        FE++  D   ++ + V +  D +   L   F+
Sbjct: 36  ISEQEVMDSLKKMQGADSTVQQLIVYQVFEDKYGD--DVSTKEVDSQYDQTKKQLGDSFD 93

Query: 219 KY-KDNYRAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
              K      E  +  I   L      +K I++++++L+  ++              + +
Sbjct: 94  SQLKTAGLTKETFKDSIKQRLAFQEGLKKHIKLTDEDLKTAWKTFHP------EVEAQII 147

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIPDVSLADSIFS 331
              ++ +A +  ++  KG  F +LA+++    +    G   K           + ++ F 
Sbjct: 148 QVASENDAKDVKKAADKGDDFSKLAKDKSTDTTTKEDGGKVKFDSTTTTVPTEVKEAAFK 207

Query: 332 LAKKGDFTPVIHG 344
           L K G  + VI  
Sbjct: 208 L-KDGQVSDVITS 219


>gi|149186120|ref|ZP_01864434.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Erythrobacter sp.
           SD-21]
 gi|148830151|gb|EDL48588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Erythrobacter sp.
           SD-21]
          Length = 448

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/470 (11%), Positives = 124/470 (26%), Gaps = 102/470 (21%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V    +  +         L ++       + +E  +   +  ++L NL+      Q  
Sbjct: 59  AVVNGYVITGTDLDQR----LALLVNANQTEIPAEELQR--VRAQVLRNLIDETLQIQAA 112

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
           E   +      V                     F    A+     ++  ++         
Sbjct: 113 EAEEIVISDAEVEQT------------------FARVAAQNNQRPEDMENYL-------- 146

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
                   +  S+  L +  R       + +  L  + V    + S   + +  E+ +  
Sbjct: 147 ------ASIGSSSASLKRQIRG-----ELAWQRLLRQKVSFFVNVSAEEVNELMERLEAA 195

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
               EY    + +F     E    +                               Q  A
Sbjct: 196 KGTDEYWL--WEIFMSATPENDAAV-------------------------------QANA 222

Query: 284 DEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
            +  + L++G  F+  A    E   +     L       + D  L   +  + + G    
Sbjct: 223 QKIMEQLRQGGSFVAYARQFSEASTAAVGGDLDWIHLAQLGDPQLETVVAQM-EAGQLVG 281

Query: 341 VIHGSFGYVIAHVSNIKP-------SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            I    GY I ++ + +           +S ++++ D           +K+    + +  
Sbjct: 282 PIKIPGGYWIVYLRDKRQVLMADPRDAMLSLKQIQIDFDPAAAPEVNKQKLDAFTQGVST 341

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
               G S DEI+       +               ++ A    EQL   +       +  
Sbjct: 342 MRGCG-SADEIASSLGASVVT------------NDQIRARALPEQLQNIMLSLQIGETTP 388

Query: 454 HTVALPDGSYMWVQIKESIPARD--RKLEEVLTDVKKDWKTVKTAEEVSS 501
              +L +G  + +      P        +E++  ++ +         +  
Sbjct: 389 PFGSLEEGVRVLMLCGRDDPESSEGPNFDELMAQIEDERINKAAQRYLRD 438


>gi|94991309|ref|YP_599409.1| foldase protein PrsA [Streptococcus pyogenes MGAS10270]
 gi|94544817|gb|ABF34865.1| Peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes
           MGAS10270]
          Length = 316

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 73/216 (33%), Gaps = 22/216 (10%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T +V M    +  S+   +       +   +  ++            S+  + + +++ 
Sbjct: 36  NTKLVSMKGDTITVSDFYNETKNTELAQKAMLSLVISRVFETQYANKVSDKEVEKAYKQT 95

Query: 221 KDNY------------RAPEYKRISYILFDVHEKEKKIEISNDEL-QAEYEKNKEKYFSP 267
            D Y              PE  +    L  + E   K +  N+ + + +Y +  + Y   
Sbjct: 96  ADQYGTSFKTVLAQSGLTPETYKKQIRLTKLVEYAVKEQAKNETISKKDYRQAYDAYTP- 154

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
              T E + F  +++A  A +++K  G  F  +A+E+  +    +  +F        +  
Sbjct: 155 -TMTAEIMQFEKEEDAKAALEAVKAEGADFAAIAKEKTIAADKKTTYTFDSGETTLPAEV 213

Query: 327 DSIFSLAKKGDFT------PVIHGSFGYVIAHVSNI 356
               S  K+G+ +              Y I  V+  
Sbjct: 214 VRAASGLKEGNRSEIITALDPATSKRTYHIIKVTQK 249


>gi|304322121|ref|YP_003855764.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvularcula
           bermudensis HTCC2503]
 gi|303301023|gb|ADM10622.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvularcula
           bermudensis HTCC2503]
          Length = 326

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 63/173 (36%), Gaps = 7/173 (4%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           K        + +S    D   K    E+S   L+A Y   +    +     + +L+  ++
Sbjct: 131 KAELALARRRILSSAYLDQAIKR---EVSETHLKAAYAAEQRAAAADRRVVMRRLLVSSE 187

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           KEA    + ++ G  F  +A          S   L   ++       + +++ +L   G 
Sbjct: 188 KEALSVARRIQTGIPFGDMARRVSLDFETRSSAGLLPPTRVSQLPTPIGETVAALP-LGT 246

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            +  +    G+ +  V +        ++E++  +  +++    ++ V +   R
Sbjct: 247 VSAPVATEEGWYLLIVESRNEVKIPPYEELRPRLMAELQRKTLAQTVAKARNR 299


>gi|329923364|ref|ZP_08278848.1| conserved domain protein [Paenibacillus sp. HGF5]
 gi|328941456|gb|EGG37748.1| conserved domain protein [Paenibacillus sp. HGF5]
          Length = 363

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/386 (10%), Positives = 115/386 (29%), Gaps = 64/386 (16%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
           F +++ V  L+        +    + + +V   ++  S F  +       I +      +
Sbjct: 19  FFILIVVTILLIAKPAFTQTHHEDAYIATVDGVEIHVSEFQRAIDANRAGIIKYFHEKYD 78

Query: 77  SERARSV-----GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           +  + +      G ++  L+ L+    L               +  +I +      +   
Sbjct: 79  AAPSAAFWTTPYGGNEIPLE-LIKKKAL------------EDSINQKIRQI--LAKEQGV 123

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
                +   +    +      +   +   +   V      +       ++A  +Y    +
Sbjct: 124 LPDISYAGFMQNFNL-----ENQRRQQAIKNHQV------IFGPAQYTEEA--YYEYVLA 170

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN-YRAPEYKRISYILFDVHEKEKKIEISN 250
              + + N  +     PS   L  ++E  K   Y AP   ++  +     +  + ++   
Sbjct: 171 NTVLSVKNHLMEHDWKPSEQQLITFYEANKRRLYHAPATVKVRQLSLSFLDANRNVD--- 227

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--LS 308
                          + E R +E            A + +  G  F Q  ++  +   ++
Sbjct: 228 -----------TLLKTQEKRKIE-----------TAREKISSGVSFEQAVKDIKQDDRVT 265

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI--KPSFTVSFQE 366
           +      S  +     +A +   L   G+ + +I  +  + +          S  + F  
Sbjct: 266 EQVYNLDSYRHNVRSPVAQASADLL-PGEVSEIIEENGSFYLMLCMEKDQLGSKYLGFDG 324

Query: 367 VKKDIANQMRITKASEKVKEDYKRLE 392
           +++ +       +  E V++     +
Sbjct: 325 IREQVLKDYIDNQYEEYVRQRLTDAK 350


>gi|119475688|ref|ZP_01616041.1| hypothetical protein GP2143_17751 [marine gamma proteobacterium
           HTCC2143]
 gi|119451891|gb|EAW33124.1| hypothetical protein GP2143_17751 [marine gamma proteobacterium
           HTCC2143]
          Length = 300

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 67/220 (30%), Gaps = 35/220 (15%)

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
            +      R V   +  +  +  I +PS   L  ++   K  Y  PE     +I +  + 
Sbjct: 91  EEDIIIRRRMVQKYMFLSESLVEITEPSGPELEDFYAANKQRYEIPEKLSFRHIYYSHNS 150

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
                + +ND   A     +            Q+   + +         K+G  F  L  
Sbjct: 151 VSTAQDENNDAESAANNMVQSL-------NASQVDTSSWR---------KQGDAF-MLQR 193

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF-------TPVIHGSFGYVIAHVS 354
           E             ++E +    L  ++F+    G            I  ++G+    + 
Sbjct: 194 EYA-----------AREPMQISELFGAVFTQGLAGISDEDIAIWVGPIRSAYGWHAVKLL 242

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           + KP  T    +++  +       K  +   + Y+ +   
Sbjct: 243 SRKPPATPLLADIRSKVVVDYIADKRRQTNADYYQSVRNQ 282


>gi|257884495|ref|ZP_05664148.1| rotamase [Enterococcus faecium 1,231,501]
 gi|257820333|gb|EEV47481.1| rotamase [Enterococcus faecium 1,231,501]
          Length = 295

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 77/237 (32%), Gaps = 32/237 (13%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK--------YK 221
           G +   +   +   +   +      IV          + S+  +T+ + +        YK
Sbjct: 38  GTLTVQDFYDNPKVKSNNQTLLRKMIVFKAFDDVYGKEISSKEVTKEYNEQIKKLGPNYK 97

Query: 222 DNYRAPEYKRISYILFDVHEKE------KKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +  +A      +Y                 +++++ +L   +++   +  +      + +
Sbjct: 98  EQLKAVGQTEETYKKLLKQMLAFQYGLKANVKLTDKDLDTAWKEFHPEVST------QII 151

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFS 331
            F  ++EAD A + + +G+ F +L +  GK      +D  +   S        +  + F 
Sbjct: 152 PFSTKEEADNAKKEVNEGENFSKLVQAYGKNKTLKETDGKMKFDSTNPGIPTEVKKAAFQ 211

Query: 332 LAKKGDFT------PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           L   G+ +              Y +  +   +        + K ++      TK  +
Sbjct: 212 L-NNGEVSDIIPVTDPTTYQQSYYLVKMVKKQDKGANK-DKYKSELEKIATETKTLD 266


>gi|328858082|gb|EGG07196.1| hypothetical protein MELLADRAFT_85993 [Melampsora larici-populina
           98AG31]
          Length = 112

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328
            V  ++   Q  A EA   LK G  F ++A E  +    +  SLG  ++  +      ++
Sbjct: 30  KVRHILCSKQSTALEAIARLKAGVGFDKVAAELSEDKARNGGSLGWMTRGSMVGP-FQEA 88

Query: 329 IFSLAKKGDFT-----PVIHGSFG 347
            F L      +     P +  +FG
Sbjct: 89  AFLLTPSTVASPTYTDPPVKTNFG 112


>gi|258576633|ref|XP_002542498.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           [Uncinocarpus reesii 1704]
 gi|237902764|gb|EEP77165.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           [Uncinocarpus reesii 1704]
          Length = 124

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA   L+ G KF ++A E  +  +    SLG   +  + +       
Sbjct: 35  VRHILCEKHSKKEEALGKLRDGAKFDEVAREYSEDKARQGGSLGWKVRGSL-NGEFEKVA 93

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           + L +               FGY I  V   K
Sbjct: 94  YEL-EPSTTANPKYAEVKTGFGYHIIMVEGRK 124


>gi|255639387|gb|ACU19989.1| unknown [Glycine max]
          Length = 146

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
              +++   Q + +E ++ L+ G           +F ++A+E  +  S      LG F +
Sbjct: 48  EARRILCEKQGKINETYKKLQDGWLGNGDKVPPAEFAKVAQEYSECPSGKKGGDLGWFPR 107

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      +  F+    G  +     + GY I      K
Sbjct: 108 GRMAGP-FQEVAFN-TPVGATSAPFKSTHGYHIILSEGRK 145


>gi|224533031|ref|ZP_03673637.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23]
 gi|224533908|ref|ZP_03674493.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a]
 gi|224512025|gb|EEF82420.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23]
 gi|224512911|gb|EEF83277.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a]
 gi|312149053|gb|ADQ29124.1| conserved hypothetical protein [Borrelia burgdorferi N40]
          Length = 500

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/274 (10%), Positives = 76/274 (27%), Gaps = 37/274 (13%)

Query: 10  RTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVG---RQKV------PFS 54
           +         ++ + F         G+ D   S       +  G    Q +       F+
Sbjct: 20  KKVGMWGIFALILIVFGFIIAPLLPGIFDNAHSSG-----LKFGSYKGQPIYYKKDSKFA 74

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            ++N +      +      +     A  +   K +             ++          
Sbjct: 75  KYVNYYSNLYSRLQGNAKNINTDYNAWYLAFMKYV-----EDVAFLDLVKKYNFYISKEM 129

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   + +SP +      FS   +          + +  D   + +  ++V       +  
Sbjct: 130 LNKNLLKSPEYLDSSGNFSSKRYN---KASDYQKVKIYDDMVENILFSNVKIFLNSNLIF 186

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + L D  K      R + Y+ L+ +        SN  +  + EK  + ++      I +
Sbjct: 187 PDSLFDMIKNMSTVERHISYLSLSYQDF------SNKEVISYAEKNLNLFKRLSLASIRF 240

Query: 235 ILFDVHEKEKKIEISN---DELQAEYEKNKEKYF 265
              +         ++    +EL   Y  +   + 
Sbjct: 241 KNMNDARNAHDKLLNKTPFEELAKLYSDDIANFK 274


>gi|150003020|ref|YP_001297764.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
           8482]
 gi|149931444|gb|ABR38142.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
           8482]
          Length = 446

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 56/160 (35%), Gaps = 19/160 (11%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLV------------FPNQKEADEAFQSLKKGKKFI 297
               +  Y + +++  + +   +  +                +++ D  +++L++G  F 
Sbjct: 103 EQAARRLYLQGEQRLQANDWIKIAHISKYLSQNASRQEEMRVRQQMDSVYEALREGADFA 162

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHGSFGYVIAHVSN 355
            LA       +  ++G        + ++ + I  L   ++   +   +   G  I    +
Sbjct: 163 TLARRYSDDEACKNVGGVLPWMPVNKNMQEWIDKLESLERNKISAPFYSPMGIHIVKWID 222

Query: 356 IKPSFTVSFQEVKKDIANQMRITKA---SEKVKEDYKRLE 392
            +     SF+E ++ + N +         E   E  + LE
Sbjct: 223 RRQGV--SFEEKREQLLNYLEKNGNCTWKELSAEQKEELE 260


>gi|170017429|ref|YP_001728348.1| parvulin-like peptidyl-prolyl isomerase [Leuconostoc citreum KM20]
 gi|169804286|gb|ACA82904.1| Parvulin-like peptidyl-prolyl isomerase [Leuconostoc citreum KM20]
          Length = 303

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 88/258 (34%), Gaps = 32/258 (12%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I EKE++    +  +        V     +        +   +N              ++
Sbjct: 36  ITEKEFVADLKQSPAGQQEFANLVINKVLAKQYGGNVSKSDVQNAFDTQKAQYGDSFQSV 95

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              +N   +Q+    K+N       + +Y            ++S+ +++  Y+   +   
Sbjct: 96  LSSNNTNESQFKNNIKNNLIMKAAVKANY------------KVSDKQIEQAYKDYHQD-- 141

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG-----SFSKEYI 320
                TV  +   ++  + +A  +LK G  +  + ++     +            S    
Sbjct: 142 ----TTVSLITAKDEDSSKKAIDALKSGDSWETVYKKYSTDKTYAKQNGQLPAFDSTSTS 197

Query: 321 PDVSLADSIFSLAKKGDF--TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI- 377
            D ++  + F + K GD+  TPV   + G+ +  ++        S   V+  ++ Q+   
Sbjct: 198 VDSAIQTAAFKIEKTGDYTTTPVTGSNGGFYVIQLNKTT--NKPSMNSVRNKLSEQIVTS 255

Query: 378 ----TKASEKVKEDYKRL 391
                K + K++E   ++
Sbjct: 256 FLNDQKNTAKIQEIIGQI 273



 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 60/192 (31%), Gaps = 36/192 (18%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K    ++    +I+G        + S T+++    K+    F+                 
Sbjct: 3   KFIWGLII---VIFGGGLIYLGFNSSKTLMTSDSGKITEKEFV----------------- 42

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
                 +     ++   NLV    L    +  G       V         F  +  ++  
Sbjct: 43  ---ADLKQSPAGQQEFANLVINKVL---AKQYGGNVSKSDVQN------AFDTQKAQY-G 89

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           D F S L+    NE ++ ++    L    +        + S+  ++QA + Y ++ +V  
Sbjct: 90  DSFQSVLSSNNTNESQFKNNIKNNLI---MKAAVKANYKVSDKQIEQAYKDYHQDTTVSL 146

Query: 195 IVLNNRHVPAIA 206
           I   +      A
Sbjct: 147 ITAKDEDSSKKA 158


>gi|146318892|ref|YP_001198604.1| parvulin-like peptidyl-prolyl isomerase [Streptococcus suis
           05ZYH33]
 gi|145689698|gb|ABP90204.1| Parvulin-like peptidyl-prolyl isomerase [Streptococcus suis
           05ZYH33]
 gi|292558552|gb|ADE31553.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Streptococcus suis
           GZ1]
          Length = 348

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 74/242 (30%), Gaps = 26/242 (10%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++ M    +  S            +   +  ++ N          S   + + ++K  + 
Sbjct: 46  IITMKGNTITVSEFYEKVKTNSQAQQVLLSMVISNVFENQYGDKVSAEEVNKEYDKKAEQ 105

Query: 224 YRAPEYKRISYILFDVHEKEKKI-----------EISNDELQAEYEKNKEKYFSPEIRTV 272
             A     +S         +++I           + +  EL  E  K     ++PE+ T 
Sbjct: 106 LGASFNAALSSAGLTEESYKEQIRTNKLVEYAVKQAAEKELTDENYKAAYDAYTPEV-TA 164

Query: 273 EQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSK----EYIPDVSLAD 327
             +   ++ +A E   + +  G  F QLA++     +    G   K           +  
Sbjct: 165 RVIKLADEAKAKEVLAAAQAEGADFAQLAKDNSTDTTTKDNGGEVKFDSTSTTVPAEVQK 224

Query: 328 SIFSLAKKGDFTPVIHGSF-------GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           ++F+L   G     +  S         Y +  +          +++ K  +   +   K 
Sbjct: 225 AVFAL-DAGQVGASVISSVDMKTYTTSYYVVKLDAKSEKSAK-WEDYKDKLKEIILAQKQ 282

Query: 381 SE 382
            +
Sbjct: 283 RD 284


>gi|154253778|ref|YP_001414602.1| SurA domain-containing protein [Parvibaculum lavamentivorans DS-1]
 gi|154157728|gb|ABS64945.1| SurA domain [Parvibaculum lavamentivorans DS-1]
          Length = 443

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/374 (12%), Positives = 98/374 (26%), Gaps = 89/374 (23%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
              V  + +         K         +   +         +  ++L +LV      Q 
Sbjct: 54  AAVVNDRIISSYDLDQRVKLV------MLSSGIPDTPENISRIRGQVLRSLVDEYLQQQE 107

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-R 161
              + +E     +   + R      +    S D   + L   G++           ++  
Sbjct: 108 AARLNIEVQQEEIDSALQRI----AQRANMSVDQIEAFLKDGGVSRAALEAQIRSDIAWN 163

Query: 162 TDVVGMFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
             +   F   +   ++ +D+  +R   E+    Y+                         
Sbjct: 164 RVIQQQFGPSVTVGDVEIDEVLRRLEEESDQPRYL------------------------- 198

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
                      +S IL      +   EI                     R VEQ+     
Sbjct: 199 -----------VSEILITFDSPQHAEEI----------------AGGAQRLVEQIRQGAP 231

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
            EA           +F Q A     + +   +G      +P+     S+ +  + G  + 
Sbjct: 232 FEAVA--------HQFSQSA----SAANGGEIGWVHASQLPEGVG--SVVAKMQPGMVSD 277

Query: 341 VIHGSFGYVIAHVSNIKPSF-------TVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            I    G+ I  +  ++            S  +V   +         S + +E     EE
Sbjct: 278 PIRTLNGFYIMQLKAMQTGSGADPMRDQYSLMQVLLPLTPDAEPQAVSRRAREA----EE 333

Query: 394 FLALGTSMDEISRR 407
           F     S D+ +R 
Sbjct: 334 FRRQTNSCDDAARN 347


>gi|218245405|ref|YP_002370776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cyanothece sp. PCC
           8801]
 gi|257058441|ref|YP_003136329.1| parvulin-like peptidyl-prolyl isomerase-like protein [Cyanothece
           sp. PCC 8802]
 gi|218165883|gb|ACK64620.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cyanothece sp. PCC
           8801]
 gi|256588607|gb|ACU99493.1| parvulin-like peptidyl-prolyl isomerase-like protein [Cyanothece
           sp. PCC 8802]
          Length = 249

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 81/242 (33%), Gaps = 20/242 (8%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL--TQWFEKYK 221
           VV            L     ++    +    I+++         P    L   Q+++K++
Sbjct: 3   VVLQIGDQELSEPDLYPLLAQYKLLPQLAKEIIIDQAIASIDCTPEEETLGRQQFYQKHQ 62

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE----YEKNKEKYFSP-----EIRTV 272
                   + + Y      +    + + + +L+      +E   E YF       +    
Sbjct: 63  IANETQLQEWVKYHGITPEQLAH-LTVRDIKLEKFKKLTWEHQLESYFLKSKGKLDRVVY 121

Query: 273 EQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEY--IPDVSLADSI 329
             +   +   A E +  + +G+  F +LA++  +     + G        +P  +++  I
Sbjct: 122 SLIRTKDPGIAQELYFRIAEGESSFTELAKQYSQGAEAQTGGLIGPVELNVPHPTISQ-I 180

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-KKDIANQMRITKASEKVKEDY 388
            S ++ G  +P       +VI  +     +      E  K  + N++     S ++K+  
Sbjct: 181 LSTSQPGQLSPPHRVGEWFVILRLEKYLTAQ---LDEATKGRLLNELFQEWLSNELKKVT 237

Query: 389 KR 390
             
Sbjct: 238 FE 239


>gi|57117487|gb|AAW33964.1| unknown [Fusobacterium nucleatum]
          Length = 231

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 71/194 (36%), Gaps = 5/194 (2%)

Query: 228 EYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
           E   I Y L  +  +  +   I  + L+  YE+N+  Y  P+   ++ +   +  +A+E 
Sbjct: 37  ESLFIRYFLEREATKIVENTNIEENVLKKIYEENQTLYKFPKKVKIDTIFVKDLAKAEEI 96

Query: 287 FQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + +   + F +L    +E+G+    ++        I      + +    K       I 
Sbjct: 97  LKEV-SLENFNELKDKNDEKGQEAKGVTDEFLFITEIHPAIAEEILQENGKNVIIKKAIP 155

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
              G+ I ++ +I+      F E ++ I   ++     +   +  + +           +
Sbjct: 156 VQEGFHILYLKDIEEERQAIFDEARETILADVKRNIFGQVYSQLIEDIANETVRPKGPVK 215

Query: 404 ISRREKIVSIDLPL 417
           I + ++  + +   
Sbjct: 216 IEKNKEDKNTETKS 229


>gi|297621734|ref|YP_003709871.1| hypothetical protein wcw_1516 [Waddlia chondrophila WSU 86-1044]
 gi|297377035|gb|ADI38865.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 349

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 112/360 (31%), Gaps = 91/360 (25%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD---KKILDNLVS 95
            +  +  +  Q +     +           ++     NS  AR    +   K+ L++L+ 
Sbjct: 38  NNRILAKINGQPISVIDVMKQMDM---FFYRQFPQYANSPEARYQFYNMSWKRALEDLID 94

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              +    +++ L   HG V  EI            F  ++ ++ L + G+  +E  D  
Sbjct: 95  KELIKADAKEVNLPMTHGEVRQEIENI---------FGPNI-IANLDKAGLTYEEAFDLT 144

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            + +    ++   V  +                 RS+                +  ++  
Sbjct: 145 KEDILFKKMMMARVNSIV---------------LRSI----------------TPQMVVD 173

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
            ++ + +    PE      I       E    I+N                    TV  L
Sbjct: 174 HYKTWAEQNSQPEKWIYQVISVRGGSNEASSTIAN--------------------TVHHL 213

Query: 276 VFPNQKEADEAFQSLKKGKKFI--QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
           +  ++       +SL    +F    +++E   S S+IS                 I SL 
Sbjct: 214 L-RDKDVELSQLKSLLHPDEFKLCSVSQEYSLSPSEISDSY------------REILSLL 260

Query: 334 KKGDFTPV-------IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM-RITKASEKVK 385
           K G F+               Y I ++  I+     SF E++  + +Q+     A+E+ K
Sbjct: 261 KPGAFSEPIAQKSRASKTDV-YRIFYLKEIEKGGAPSFYEIQNRLRDQLVEKEMATEQAK 319


>gi|225549270|ref|ZP_03770243.1| conserved hypothetical protein [Borrelia burgdorferi 94a]
 gi|225370128|gb|EEG99568.1| conserved hypothetical protein [Borrelia burgdorferi 94a]
          Length = 500

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/274 (10%), Positives = 76/274 (27%), Gaps = 37/274 (13%)

Query: 10  RTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVG---RQKV------PFS 54
           +         ++ + F         G+ D   S       +  G    Q +       F+
Sbjct: 20  KKVGMWGIFALILIVFGFIIAPLLPGIFDNAHSSG-----LKFGSYKGQPIYYKKDSKFA 74

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            ++N +      +      +     A  +   K +             ++          
Sbjct: 75  KYVNYYSNLYSRLQGNAKNINTDYNAWYLAFMKYV-----EDVAFLDLVKKYNFYISKEM 129

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   + +SP +      FS   +          + +  D   + +  ++V       +  
Sbjct: 130 LNKNLLKSPEYLDSSGNFSSKRYN---KASDYQKVKIYDDMVENILFSNVKIFLNSNLIF 186

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + L D  K      R + Y+ L+ +        SN  +  + EK  + ++      I +
Sbjct: 187 PDSLFDMIKNMSTVERRISYLSLSYQDF------SNKEVISYAEKNLNLFKRLSLASIRF 240

Query: 235 ILFDVHEKEKKIEISN---DELQAEYEKNKEKYF 265
              +         ++    +EL   Y  +   + 
Sbjct: 241 KNMNDARNAHDKLLNKTPFEELAKLYSDDIANFK 274


>gi|19075413|ref|NP_587913.1| peptidyl-prolyl cis-trans isomerase Pin1 [Schizosaccharomyces pombe
           972h-]
 gi|21542175|sp|O74448|PIN1_SCHPO RecName: Full=Peptidyl-prolyl cis-trans isomerase pin1;
           Short=PPIase pin1
 gi|3560257|emb|CAA20742.1| peptidyl-prolyl cis-trans isomerase Pin1 [Schizosaccharomyces
           pombe]
          Length = 175

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 273 EQLV---FPNQKEADEAFQSLKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
           E +       +K A+   Q LK G            +   +     LG F ++ +     
Sbjct: 88  EHITRSKEEARKLAEHYEQLLKSGSVSMHDLAMKESDCSSARRGGELGEFGRDEMQKP-F 146

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            D+ F+L K G+ + V+  S G+ I  
Sbjct: 147 EDAAFAL-KPGEISGVVETSSGFHIIQ 172


>gi|312142755|ref|YP_003994201.1| peptidil-prolyl cis-trans isomerase [Halanaerobium sp.
           'sapolanicus']
 gi|311903406|gb|ADQ13847.1| peptidil-prolyl cis-trans isomerase [Halanaerobium sp.
           'sapolanicus']
          Length = 251

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 11/149 (7%)

Query: 30  LSDALFSVSGSSTVVSVGRQKVPFSSFINSWK-----QELGMISQKIGFVVNSERARSVG 84
           +  ++    G + V  V  +++               QE+  I Q++  V+    + +  
Sbjct: 33  VDSSIEEDIGGNIVAEVNGEEITDQELAQQANVNQLLQEIAQIDQQLAQVLVDSESGNEV 92

Query: 85  LD---KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
           LD   K  LD L+    L Q  E++G+E     V            + N  S + F++ L
Sbjct: 93  LDEFQKLKLDALIDNVLLSQQAEELGIELTDEEVDEIYQAQKESIKQQNDLSEEDFLAVL 152

Query: 142 AREGI-NEKEYIDHYTK--MLSRTDVVGM 167
             +G  +E+EY   +     L    ++  
Sbjct: 153 ENQGFESEEEYKQAFADNPSLKVNKLIEQ 181


>gi|227431653|ref|ZP_03913688.1| possible peptidylprolyl isomerase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352592|gb|EEJ42783.1| possible peptidylprolyl isomerase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 306

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 84/248 (33%), Gaps = 43/248 (17%)

Query: 146 INEKEYIDHYT-----KMLSRTDVVGMFVG---GMRPSNLLLDQAKRFYFENRSVDYIVL 197
           I EK++ +        +      V+   +G   G + S+  +  A           +  +
Sbjct: 36  ITEKQFYEDIKTSSAGQQEFANMVINKVLGAEYGDQVSDTDVQNAYDAQKAQYGSSFKTV 95

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
              +     + ++A   +  +                 L      +   ++++ +L+  Y
Sbjct: 96  LASN-----NTTDAQFKKNIKNN---------------LIINAAIKANYKVTDKQLKTAY 135

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLG 313
                        T+  +   N+ +A EA  +LK G  +  + ++         S+  + 
Sbjct: 136 TNYHSD------TTISMITAKNEAKAKEAIAALKNGDNWNTVYKKYSTDSTYKSSNGKMP 189

Query: 314 SF-SKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
           +F S     D ++  + F L K GD++  PV   S  Y +  ++        S   ++  
Sbjct: 190 AFNSTNTSIDSAVQTAAFKLDKVGDYSTEPVTGTSGSYYVIKLNKKT--TKPSMSSLRST 247

Query: 371 IANQMRIT 378
           ++ Q+   
Sbjct: 248 LSTQIVTD 255


>gi|116618330|ref|YP_818701.1| parvulin-like peptidyl-prolyl isomerase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116097177|gb|ABJ62328.1| Parvulin-like peptidyl-prolyl isomerase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 309

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 84/248 (33%), Gaps = 43/248 (17%)

Query: 146 INEKEYIDHYT-----KMLSRTDVVGMFVG---GMRPSNLLLDQAKRFYFENRSVDYIVL 197
           I EK++ +        +      V+   +G   G + S+  +  A           +  +
Sbjct: 36  ITEKQFYEDIKTSSAGQQEFANMVINKVLGAEYGDQVSDTDVQNAYDAQKAQYGSSFKTV 95

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
              +     + ++A   +  +                 L      +   ++++ +L+  Y
Sbjct: 96  LASN-----NTTDAQFKKNIKNN---------------LIINAAIKANYKVTDKQLKTAY 135

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLG 313
                        T+  +   N+ +A EA  +LK G  +  + ++         S+  + 
Sbjct: 136 TNYHSD------TTISMITAKNEAKAKEAIAALKNGDNWNTVYKKYSTDSTYKSSNGKMP 189

Query: 314 SF-SKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
           +F S     D ++  + F L K GD++  PV   S  Y +  ++        S   ++  
Sbjct: 190 AFNSTNTSIDSAVQTAAFKLDKVGDYSTEPVTGTSGSYYVIKLNKKT--TKPSMSSLRST 247

Query: 371 IANQMRIT 378
           ++ Q+   
Sbjct: 248 LSTQIVTD 255


>gi|226951693|ref|ZP_03822157.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. ATCC 27244]
 gi|294651378|ref|ZP_06728696.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226837558|gb|EEH69941.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. ATCC 27244]
 gi|292822733|gb|EFF81618.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 96

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
           V  ++  ++  A++  + ++ G  F ++A++      +     LG   K  +    +   
Sbjct: 6   VRHILVKDKDMAEQLKKRIQSGADFSKIAKQYSTCNSAKRGGELGEVKKGQLV-PVIDKL 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +FS A++      I   FG+ +  + 
Sbjct: 65  VFSAAER-VLHGPIKSQFGFHLLEIK 89


>gi|15594385|ref|NP_212173.1| hypothetical protein BB0039 [Borrelia burgdorferi B31]
 gi|195941779|ref|ZP_03087161.1| hypothetical protein Bbur8_02719 [Borrelia burgdorferi 80a]
 gi|218249405|ref|YP_002374573.1| hypothetical protein BbuZS7_0039 [Borrelia burgdorferi ZS7]
 gi|223889087|ref|ZP_03623676.1| conserved hypothetical protein [Borrelia burgdorferi 64b]
 gi|226320786|ref|ZP_03796342.1| conserved hypothetical protein [Borrelia burgdorferi 29805]
 gi|226322046|ref|ZP_03797571.1| conserved hypothetical protein [Borrelia burgdorferi Bol26]
 gi|3915328|sp|O51068|Y039_BORBU RecName: Full=Uncharacterized protein BB_0039
 gi|2687915|gb|AAC66424.1| predicted coding region BB0039 [Borrelia burgdorferi B31]
 gi|218164593|gb|ACK74654.1| conserved hypothetical protein [Borrelia burgdorferi ZS7]
 gi|223885336|gb|EEF56437.1| conserved hypothetical protein [Borrelia burgdorferi 64b]
 gi|226232636|gb|EEH31390.1| conserved hypothetical protein [Borrelia burgdorferi Bol26]
 gi|226233841|gb|EEH32566.1| conserved hypothetical protein [Borrelia burgdorferi 29805]
          Length = 500

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/274 (10%), Positives = 76/274 (27%), Gaps = 37/274 (13%)

Query: 10  RTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVG---RQKV------PFS 54
           +         ++ + F         G+ D   S       +  G    Q +       F+
Sbjct: 20  KKVGMWGIFALILIVFGFIIAPLLPGIFDNAHSSG-----LKFGSYKGQPIYYKKDSKFA 74

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            ++N +      +      +     A  +   K +             ++          
Sbjct: 75  KYVNYYSNLYSRLQGNAKNINTDYNAWYLAFMKYV-----EDVAFLDLVKKYNFYISKEM 129

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   + +SP +      FS   +          + +  D   + +  ++V       +  
Sbjct: 130 LNKNLLKSPEYLDSSGNFSSKRYN---KASDYQKVKIYDDMVENILFSNVKIFLNSNLIF 186

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + L D  K      R + Y+ L+ +        SN  +  + EK  + ++      I +
Sbjct: 187 PDSLFDMIKNMSTVERHISYLSLSYQDF------SNKEVISYAEKNLNLFKRLSLASIRF 240

Query: 235 ILFDVHEKEKKIEISN---DELQAEYEKNKEKYF 265
              +         ++    +EL   Y  +   + 
Sbjct: 241 KNMNDARTAHDKLLNKTPFEELAKLYSDDIANFK 274


>gi|332885976|gb|EGK06220.1| hypothetical protein HMPREF9456_00094 [Dysgonomonas mossii DSM
           22836]
          Length = 460

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 20/153 (13%)

Query: 228 EYKRISYILFDVHE--KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ----- 280
           E  R  Y++ +V +    KK  ++  E++  Y +  +         VE  +  N+     
Sbjct: 130 EQIRNEYLVSEVKKSLVGKKTNLTPSEVRKYYAQLPKDSLPYIPTMVEVQIITNEPVIPL 189

Query: 281 KEADEAFQSLK--------KGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADS 328
           K+ D+    L+            F  LA    E+ G + +   LG   +  +     +  
Sbjct: 190 KDIDQVKDRLRDYTNRINSGTADFATLAIMYSEDPGSAPNGGELGFMGRAELL-PEFSSV 248

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
            FSL+     + ++   +G+ I  +   +    
Sbjct: 249 GFSLSDPKKVSNIVETEYGFHIIQLIERRGDRA 281


>gi|167765434|ref|ZP_02437547.1| hypothetical protein BACSTE_03824 [Bacteroides stercoris ATCC
           43183]
 gi|167697062|gb|EDS13641.1| hypothetical protein BACSTE_03824 [Bacteroides stercoris ATCC
           43183]
          Length = 518

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/441 (12%), Positives = 124/441 (28%), Gaps = 70/441 (15%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------VFPNQ 280
           +Y    +        +  +E +  Y+K K  + +     V  +            +    
Sbjct: 92  NYRNRLIKSYLTDTAVIENEARRLYDKMKAGHHAG-RVRVSHIFKYLPQNVSGHALRKAV 150

Query: 281 KEADEAFQSLKKG---KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
              D  ++ L++    + F    +          +          V   +  F L+  G+
Sbjct: 151 AGMDSIYEYLRRNQTPEAFDACVKRFSDEKQPFWVSWLQ----MPVEFENVAFELS-AGE 205

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK-VKEDYKRLEEFLA 396
            +       G  I  V         SF +VK  +         ++  V+   ++L++   
Sbjct: 206 VSQPFFTPQGIHIVKVIERME--MPSFDDVKNGMEVCRAYRHGTDWGVEAQVEKLKKEYG 263

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE----VAAIPYKEQLLFRVFGKDDPLSK 452
                  +    +       L   AGK   G +      A P   +     F     L  
Sbjct: 264 YAPDKTGMDELIRTGQTKRTLFTLAGKSYTGNDFICFAVAYPAGIRRQLDAFVMKTVLDY 323

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKL------EEVLTDVKKD----------------W 490
           ++         +  Q++E    R+R L      +E+   ++ D                W
Sbjct: 324 ENVCLERKYPELRYQVEEY---RNRLLLDKITGQEIQKRIESDEAGLQTYFEKHRSDYQW 380

Query: 491 KTVK--------TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
           +  +         ++ +  +A + +    +      +    +  +     Q      +  
Sbjct: 381 REQRYKGIVLHGVSKRIVKQARKFLKSLPE-----EEWKDAIRLTFNAGAQPQIQAEQGT 435

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
           F   D +  V     +     P+   +S+    V   KV    +  +    +       L
Sbjct: 436 FASGDNVY-VDDLVFKGKDAAPM---VSFPFTAVLGKKVKAPDDYREVKDRVVTDYRNCL 491

Query: 603 LDSVIAYLKSQYSVTVHDNLI 623
               I  L++   V ++  ++
Sbjct: 492 EKQWITRLRTSAKVEINQEVL 512


>gi|47218949|emb|CAF98147.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1206

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 27/112 (24%)

Query: 265 FSPEIRTVEQLVFP-----------------NQKEADEAFQ----SLKKG-KKFIQLAEE 302
             PE      L+                    ++EA E  Q     +K G +KF  LA +
Sbjct: 43  GDPEKVRCSHLLVKHNQSRRPSSWRQQNITRTKEEALELIQGYIEDIKSGKEKFESLASQ 102

Query: 303 QG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
                 + +   LG F +  +      D+ F+L K GD +  +    G  + 
Sbjct: 103 FSDCSSAKNGGDLGLFGRGQMQKP-FEDASFAL-KVGDMSGPVFTDSGVHVI 152


>gi|306825386|ref|ZP_07458726.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304432324|gb|EFM35300.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 339

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 85/275 (30%), Gaps = 37/275 (13%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I E ++ +      +   V+            L    ++ + +    +    +     A 
Sbjct: 64  ITEHQFFEEVKNNPTAQQVL------------LNMTIQKVFEQQYGSEVTDKDVDDAVA- 110

Query: 206 ADPSNAVLTQWFEKY----KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
                    ++ + Y    +     PE ++       + E   K    ++     Y+K  
Sbjct: 111 -----EEQKKYGDSYNSVLQRAGMTPETRKAQIRTSKLVELAVKKAAESELTDEAYQKAF 165

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLG----SFS 316
           E Y      T + +   N+ +A E  +  K  G  F QLA++          G      S
Sbjct: 166 ESYTPD--VTAQIIRMDNEDKAKEVLEKAKAEGADFAQLAKDNSNDDKTKENGGEITFDS 223

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIH------GSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                   +  + F+L   G  + VI        S  + I  V+      + + ++ K+ 
Sbjct: 224 ASTELPEQVKKAAFALDVNG-VSDVITATGTQAYSNQFYIVKVTKKTE-KSSNLEDYKEK 281

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           +   +   K ++         +E  A    + + +
Sbjct: 282 LKTIILTQKQNDSAFVQGVIGKELQAANIKVKDQA 316


>gi|146343136|ref|YP_001208184.1| putative signal peptide [Bradyrhizobium sp. ORS278]
 gi|146195942|emb|CAL79969.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS278]
          Length = 303

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 72/162 (44%), Gaps = 8/162 (4%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           ++ Y++FD     +    ++++LQA + +N  ++  PE  +       ++  A  A   +
Sbjct: 141 KLQYLIFDQVRVPQP---TDEQLQAWFAENHARFDEPERVSFFMTPPSDEATARRALDDI 197

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           ++ ++  +L  +Q +++ D  + S +  +    S  D++  L  +     ++    G+ +
Sbjct: 198 REQRETEEL-RDQTRAILDRPVPSLADGF--GQSFRDNLLKLPLQEWT--LLQSKDGWHV 252

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             +   KP     F++++ + A      +  ++  E   RL+
Sbjct: 253 VRLDARKPGALAKFEDIRAEAAKIWTTEETRKQAWEAVNRLK 294


>gi|147669657|ref|YP_001214475.1| hypothetical protein DehaBAV1_1017 [Dehalococcoides sp. BAV1]
 gi|146270605|gb|ABQ17597.1| hypothetical protein DehaBAV1_1017 [Dehalococcoides sp. BAV1]
          Length = 422

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/423 (13%), Positives = 132/423 (31%), Gaps = 60/423 (14%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSF 56
            E  RK  R   A   L V+ +   + G+               +TV++VG  K   + F
Sbjct: 21  FEAQRKRQRIIFATG-LSVIGIVLALVGIGVYKGWYVDQYKPMHTTVLTVGDTKYNVAYF 79

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           +++ +   G  SQ            +      + + +     + +   ++G       + 
Sbjct: 80  VDALRHFTGGDSQ-----------YAYYFIDAVSERIQLNQLMVEKASEMGYTISDDEID 128

Query: 117 GEIARS-----PLFHGK------DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
             I  +     P            +K   + F +++ +      E  +    +L   +  
Sbjct: 129 AAIEENSLTDVPAVRDIVRASLLTDKLKTEYFDTQVPQ----TAEQREALAMLLESENAA 184

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
              + G+        +A     E+ +                P++  +T  +        
Sbjct: 185 SDVLAGIITDEEFAAKAAELSLESNT------KTDSGSIGFKPAD-TITSLYGS-----E 232

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
             E    S   +D    +   ++S         +  E+    E      ++ P+++ A E
Sbjct: 233 ILEKYIFSTEGYDYALVQD-ADVSKQRA-YWLIEVLERKTDSEQIHTLGMLLPSEQVALE 290

Query: 286 AFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFSLAKK-GDFTP 340
               L  G+ +  LA E  +      +   +   +   +P+ ++AD IF+   +      
Sbjct: 291 VKARLAAGESWGDLAVEFSQLANVEENQGDMDWITFSSVPE-NVADIIFATDVELNTVLD 349

Query: 341 VIHGSFGYV-----IAHVSNIKPSFTVSFQEVKKDIANQM---RITKASEKVKEDYKRLE 392
            I     Y      I  + +I  +  +S  + K  I++++        +  + +      
Sbjct: 350 PIQDDTNYTRGGCWIVRLKSIDENRQLSEDDRKLLISSKLDQWTADLKAANLDKLTNTFS 409

Query: 393 EFL 395
           + L
Sbjct: 410 DEL 412


>gi|309972385|gb|ADO95586.1| Putative survival protein SurA-like protein [Haemophilus influenzae
           R2846]
          Length = 313

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/390 (12%), Positives = 111/390 (28%), Gaps = 118/390 (30%)

Query: 21  LFVPFLIWGLSDALFSV---SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           +   FL+  L    F+    +    V +V    +  S            +   +G   + 
Sbjct: 7   ILKSFLLATLGCVAFTSMAQAEERVVATVDGIPILES-----------QVRANMGKKGD- 54

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
                    +  LD ++    + + I++ G++ D   +   +  +       N  ++  F
Sbjct: 55  --------RQSALDKIIDDLLVQKAIQESGVKIDPREIDRVVEDTAA----RNGLTYGQF 102

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
           +  L  +GI+   +         R  +    V G                         +
Sbjct: 103 LDALDYQGISLNTF---------RQQIANQMVMGA------------------------V 129

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
            N+ +    D +   +    +K               +L +   +    +++  E    Y
Sbjct: 130 RNKAIQESIDVTREEVVALGQK---------------MLDEAKSQGTAQKVTGKE----Y 170

Query: 258 EKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSL-----KKGKKFIQLAEEQGKSL 307
           E             V  ++       N  +A +    +          F   A +  K  
Sbjct: 171 E-------------VRHILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDY 217

Query: 308 SDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              + G       P+      A ++   +K+G  +      FG+ I  V+ +        
Sbjct: 218 LSGANGGSLGYAFPETYAPQFAQTVMK-SKQGVISAPFKTEFGWHILEVTGVSDG----- 271

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEF 394
                D+  +    KA E++     +L++ 
Sbjct: 272 -----DLTAEAYTQKAYERLVN--TQLQDA 294


>gi|148234054|ref|NP_001089028.1| peptidylprolyl cis/trans isomerase, NIMA-interacting 1 [Xenopus
           laevis]
 gi|50416500|gb|AAH77181.1| LOC503670 protein [Xenopus laevis]
 gi|77748402|gb|AAI06674.1| LOC503670 protein [Xenopus laevis]
          Length = 159

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAF----QSLKKG-KKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +   + EA E      Q +K G + F  LA +      + +   LGSF K  +      D
Sbjct: 74  ITRTKDEALELINGYIQKIKSGDEDFESLASQFSDCSSAKAGGDLGSFGKGAMQKP-FED 132

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L + G+ +  +    G  I 
Sbjct: 133 ASFAL-RPGEMSGPVFTESGIHII 155


>gi|254255307|ref|ZP_04948623.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
 gi|124901044|gb|EAY71794.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
          Length = 292

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 59/156 (37%), Gaps = 7/156 (4%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
            +++ +++  Y++   ++  P    V ++ F ++  A  A   L  G+ F  +A     +
Sbjct: 126 PVTDTDVRRRYDEIAGQFG-PYQYQVSRMTFTDEPTARFALALLGSGESFANVAARTHAT 184

Query: 307 LSDISLGSF------SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
                  SF       +     + LA +I ++         +     +++A + + + + 
Sbjct: 185 DVQTDWISFKTPPAEGRTQGLPLPLAQTIAAMNAGDITHTPVRAGDRFIVARLDDRRDAV 244

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
             SF +    + N +   +A +       +L +  A
Sbjct: 245 VPSFAQASGAMRNALERKRADDAFAALIAQLAQKAA 280



 Score = 38.4 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 18/74 (24%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           S      V +V    V  +    +                     R   +  ++L  LV+
Sbjct: 41  SADAGDVVATVNGVAVHRAELDEAM------------------IGRQESMRPQVLQGLVA 82

Query: 96  GATLDQFIEDIGLE 109
              L Q  E  GL 
Sbjct: 83  RELLRQAAERDGLG 96


>gi|71652260|ref|XP_814791.1| peptidyl-prolyl cis-trans isomerase/rotamase [Trypanosoma cruzi
           strain CL Brener]
 gi|70879793|gb|EAN92940.1| peptidyl-prolyl cis-trans isomerase/rotamase, putative [Trypanosoma
           cruzi]
          Length = 117

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 6/76 (7%)

Query: 281 KEADEAFQSLKKGK-KFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
            E  +  + +  G+  F   A ++   G   S   LG F    +      D+  SL   G
Sbjct: 41  AELKQWAKRIADGEITFEDAARQRSDCGSYNSGGDLGFFGPGVMMKP-FEDAARSL-NVG 98

Query: 337 DFTPVIHGSFGYVIAH 352
           + + V+    G  I  
Sbjct: 99  EVSGVVRTESGLHIIK 114


>gi|134278147|ref|ZP_01764861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 305]
 gi|134249931|gb|EBA50011.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 305]
          Length = 280

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 80/217 (36%), Gaps = 16/217 (7%)

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
                 + N  +        A    + ++ +        K  +     + +  K   +S+
Sbjct: 61  DATRAQIENDMISGEVVRQAAEKANYGDRKEVAAIVQMAKTKAESELYLRDNVKVAPVSD 120

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---L 307
            E++A Y+         E +  + +   +   A +   +LK+G  F  LA +   +    
Sbjct: 121 SEVKARYDAMVAGAGRLEYKP-QIISVNDDATAGKVLAALKQGHSFDDLARQYSVASNRA 179

Query: 308 SDISLGSFS--------KEYIPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIK 357
           +  ++G  +        +       +A ++ +L K G++      + G   VI  +S+++
Sbjct: 180 TGGAMGWVTFKTPVQEGQTQGVPFPMAKAMANL-KAGEYAQ-TAVALGDARVIIKMSDVR 237

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
           P+  +S+ E+K  +  Q+   +  +      ++L   
Sbjct: 238 PTKILSYDEIKSALRQQLEAAERQKATDTLVQQLLNE 274



 Score = 37.3 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 45/126 (35%), Gaps = 13/126 (10%)

Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQIN---------RMDNENKFFGYDGISQVFSGPV 557
           VL   K+G +F D+ +    +                   + + +   +     + +   
Sbjct: 155 VLAALKQGHSFDDLARQYSVASNRATGGAMGWVTFKTPVQEGQTQGVPFPMAKAMANLKA 214

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN----KDLLDSVIAYLKSQ 613
                  +  G + V+ K+++ +   +   D+  S L Q +     +   D+++  L ++
Sbjct: 215 GEYAQTAVALGDARVIIKMSDVRPTKILSYDEIKSALRQQLEAAERQKATDTLVQQLLNE 274

Query: 614 YSVTVH 619
            +V  +
Sbjct: 275 ATVHRN 280


>gi|257080935|ref|ZP_05575296.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis E1Sol]
 gi|256988965|gb|EEU76267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis E1Sol]
          Length = 342

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 79/245 (32%), Gaps = 30/245 (12%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV-LNNRHVPA 204
           I   ++ +   +  +        V          D+      + +  D    +  +    
Sbjct: 36  ITVDDFYNQIKEQSTSQQAFSQMVIYKVFEEKYGDKVTDKAIQKKFDDAKKQVEAQGGKF 95

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
               + A LT+  + +K   +  E  ++          +  ++I++++L+  +       
Sbjct: 96  SDALTQAGLTE--KSFKKQLKQAEAMQV--------GLKDHLKITDEDLKTAWASFHP-- 143

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYI 320
                   + +   ++ +A    + +  G  F ++A+++    +    G      S+   
Sbjct: 144 ----EVEAQIIQVASEDDAKAVKKEITDGGDFAKIAKDKSTDTATKKDGGKIKFDSQSTT 199

Query: 321 PDVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDIA 372
               + ++ F L K G+ +              Y +  ++  K        +++  K IA
Sbjct: 200 VPAEVKEAAFKL-KDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIA 258

Query: 373 NQMRI 377
              ++
Sbjct: 259 EDTKL 263


>gi|170721894|ref|YP_001749582.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           W619]
 gi|169759897|gb|ACA73213.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           W619]
          Length = 91

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++     EA++  Q +  G+ F  LA++     S      LG      +   ++  
Sbjct: 4   QARHILVKTADEAEKLKQRIANGEAFDVLAKKLSTCPSGKRGGDLGEVRPGQLVG-AIDQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
            IF    +      I   FGY +  
Sbjct: 63  VIFKKPLR-VVHGPIKSKFGYHLVQ 86


>gi|322828325|gb|EFZ32193.1| peptidyl-prolyl cis-trans isomerase/rotamase, putative [Trypanosoma
           cruzi]
          Length = 117

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 6/76 (7%)

Query: 281 KEADEAFQSLKKGK-KFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
            E  +  + +  G+  F   A ++   G   S   LG F    +      D+  SL   G
Sbjct: 41  AELKQWAKRIADGEITFEDAARQRSDCGSYNSGGDLGFFGPGVMMKP-FEDAARSL-NVG 98

Query: 337 DFTPVIHGSFGYVIAH 352
           + + V+    G  I  
Sbjct: 99  EVSGVVRTESGLHIIK 114


>gi|302653909|ref|XP_003018770.1| hypothetical protein TRV_07205 [Trichophyton verrucosum HKI 0517]
 gi|291182444|gb|EFE38125.1| hypothetical protein TRV_07205 [Trichophyton verrucosum HKI 0517]
          Length = 150

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           + +EA + L+ G KF  +A E  +  +    SLG   +  + D +   + + L +     
Sbjct: 71  KKEEALEKLRAGAKFDDVAREFSEDKARQGGSLGWKVRGSL-DAAFEKAAYEL-EPSTTG 128

Query: 340 PVI----HGSFGYVIAHVSNIK 357
                     FGY I  V   K
Sbjct: 129 NPKYVEVKTGFGYHIIMVEGRK 150


>gi|157363381|ref|YP_001470148.1| hypothetical protein Tlet_0517 [Thermotoga lettingae TMO]
 gi|157313985|gb|ABV33084.1| conserved hypothetical protein [Thermotoga lettingae TMO]
          Length = 532

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 69/516 (13%), Positives = 157/516 (30%), Gaps = 122/516 (23%)

Query: 5   IRKASRTWVAKIFLVVLFVPFL----IWGLSDALFSVSGSSTV--------VSVGRQKVP 52
           +R+  + W  K+ + ++ + F+     W ++  L     SS +        +++    + 
Sbjct: 1   MREWFKKW-QKVIVWIIAISFVAGIAWWSVASYLSGRQESSKISLDQAIGYLTIAGSPIE 59

Query: 53  FSS---FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE 109
            S      +    E G +    G        +       +L++L+    +  + +   L 
Sbjct: 60  DSDTWVLPSELDSEYGNLLNNYGISQLDPIFQEPSQKASLLEDLLKNKVILHYAKQNKLT 119

Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
           A +  +  ++                              EY     K  S    +    
Sbjct: 120 ASNKEIEAKL-----------------------------NEYRQQIEKDQSLVQYIKQRY 150

Query: 170 GGMRP--SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
           G +    + +L    ++   + + V           ++A+  +  + ++FE+  D     
Sbjct: 151 GSVNVYLNAVLKPTLEKSLTQQKVV----------ASVANVDSEEMKKYFEENIDQ---- 196

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
                                    L+ +Y+K   K  S          F ++  A++  
Sbjct: 197 -------------------------LRKKYDKVDAKLVS----------FTDESSANKFI 221

Query: 288 QS-LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
              L+KG  F   A E G S+ DI   + ++  I D      IFS A      P+  GS 
Sbjct: 222 NILLEKG--FDGAASEMGLSVQDIP--NLTRG-IFDEKFEKDIFSGATNTAVGPIPLGS- 275

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
            + +  V +   +    F+     +++     K S + ++  +  E + +       I+ 
Sbjct: 276 SWYVLEVQS--ATVLTDFENFA--LSDTYESEKNSLQSQKMQQWYENYTSEKNIELVIAD 331

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
                   +  V                   + L     +D+ +S      L     + +
Sbjct: 332 EVYSTWRKVSSV---------STPTEYESLRKELKEKIFQDNSISPQAPDTLKSAYVVLL 382

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
           +  E        L++      +  K +   +E+  K
Sbjct: 383 EKIE------ESLDQSDDQSSEKLKQIMAEKEMLIK 412


>gi|114328860|ref|YP_746017.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317034|gb|ABI63094.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 468

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 12/178 (6%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           S   +S V  V    +              + +   G  ++ E      L  ++L  LV 
Sbjct: 66  SPDETSIVAVVNGDVISKGDVDAR----RRLFAMSTGLPMSKEVLDR--LTPQVLRQLVD 119

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
                Q I+  G+      +   I          N    D    +LA +G++ +  ID  
Sbjct: 120 EKLRLQEIQRRGIVITDSDIAHSIQGMEQ----RNGMQPDALRHKLAADGVSMRTLIDQI 175

Query: 156 TKMLS-RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
              L     +       +R S+  +   +      +      ++   +P   DPS A 
Sbjct: 176 RVQLGWTRVLRQQLGERVRISDKEIQDEEELLASQKGQTEYRVSEIFIPVD-DPSRAQ 232



 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 15/141 (10%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------ 282
             ++ +      +  +++ IS+ E+Q E E    +    E R V ++  P          
Sbjct: 176 RVQLGWTRVLRQQLGERVRISDKEIQDEEELLASQKGQTEYR-VSEIFIPVDDPSRAQAA 234

Query: 283 ---ADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
              AD   Q L+ G  F  +A +  +   +L    LG      + D  +   +  +   G
Sbjct: 235 HDFADTVIQQLRSGAPFPVVAAQFSQSQTALEGGDLGWVQPNQL-DPQVVSVLKEMP-PG 292

Query: 337 DFTPVIHGSFGYVIAHVSNIK 357
             +  I  + G  I  +   +
Sbjct: 293 AISNPIDVAGGIEIVALRGKR 313


>gi|114052054|ref|NP_001040206.1| rotamase Pin1 [Bombyx mori]
 gi|87248389|gb|ABD36247.1| rotamase Pin1 [Bombyx mori]
          Length = 169

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 11/93 (11%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQS-----LKKGKKFIQLAEEQG---KSLSDISLGSFSKE 318
           P     E +    ++EA +  Q      + +  KF +LA        +  D  LG F K 
Sbjct: 76  PSSWREEHIT-RTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKKG 134

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            +      D  FSL K G  +  +H   G  I 
Sbjct: 135 QMQKP-FEDVAFSL-KIGQLSQPVHTDSGIHII 165


>gi|242049250|ref|XP_002462369.1| hypothetical protein SORBIDRAFT_02g024520 [Sorghum bicolor]
 gi|241925746|gb|EER98890.1| hypothetical protein SORBIDRAFT_02g024520 [Sorghum bicolor]
          Length = 152

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQGKSLSD---ISLGSFSK 317
               ++   Q + +EA++ L+ G           +F ++A+E  +  S      LG F +
Sbjct: 54  KARHVLCEKQGKINEAYKKLQDGWLDNGDKVPPAEFAKVAQEYSECPSGKKGGDLGWFPR 113

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +      +  F+    G  +     + GY        K
Sbjct: 114 GKMAGP-FQEVAFN-TPVGACSAPFKSTHGYHFILCEGRK 151


>gi|227515601|ref|ZP_03945650.1| peptidylprolyl isomerase [Lactobacillus fermentum ATCC 14931]
 gi|227086031|gb|EEI21343.1| peptidylprolyl isomerase [Lactobacillus fermentum ATCC 14931]
          Length = 313

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 32/194 (16%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI--------------EISNDE 252
             S + +   +  YK  Y +     +S         +++I                S+  
Sbjct: 65  KVSTSEVNSEYNAYKKEYGSSFSTVLSEEGLTAKSFKQQIRSNLLLKAAVRNYSTFSSSA 124

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-----KGKKFIQLAEEQGKSL 307
           L+ +++K + K  + E      ++  +++ A     +L      K K+F +LA+ +    
Sbjct: 125 LKKQWKKYEPKVQTAE------ILVGSKETAQSIIDTLNNTSGSKLKEFKKLAKSKSTDT 178

Query: 308 SDISLGSF-----SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +  S G       + +     +   + F+L      T  +    GY + ++         
Sbjct: 179 TTKSNGGVLSAFDNTDTSLPSAYRKAAFALKTGEYTTEPVKTDNGYYVIYMIKHPAKGKY 238

Query: 363 S--FQEVKKDIANQ 374
           S    ++K  I  Q
Sbjct: 239 SSHISDLKDQIVTQ 252



 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 34/170 (20%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           G+  V +    K+  S + +S KQ                        K++L  ++    
Sbjct: 18  GNKAVATTSGGKITESEYYSSMKQTSN--------------------GKQVLQQMILDKV 57

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L+   +  G +     V  E       +    K     F + L+ EG+  K +       
Sbjct: 58  LE---KQYGSKVSTSEVNSE-------YNAYKKEYGSSFSTVLSEEGLTAKSFKQQIRSN 107

Query: 159 LSRTDVVGMFVG-GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
           L    +           S+ L  Q K++  + ++ + +V +     +I D
Sbjct: 108 LL---LKAAVRNYSTFSSSALKKQWKKYEPKVQTAEILVGSKETAQSIID 154


>gi|218960353|ref|YP_001740128.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729010|emb|CAO79921.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
          Length = 266

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 63/158 (39%), Gaps = 8/158 (5%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
            ++  +IE+S D+L   +  ++ ++        + ++   ++  A+   Q L +G  F +
Sbjct: 103 AKRLSEIEVSEDQLFNYFRLHQAEFQKNAVEYNIRRIALMDKISAENVLQQLSQGMSFTE 162

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA----KKGDFTPVIHGSFGYVIAHVS 354
             +           G      +   +  DS+F L     K+ ++  V      YV   V 
Sbjct: 163 AVQRYSTEELKNRGGFMG---MVSATGTDSLFWLKARELKENEYGLVYKEPMWYVFQVVE 219

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +       +F++ + +I  ++ + K  +  +E  K ++
Sbjct: 220 SKITPQEANFEDYRAEIKRKVLLEKQDQVYQELIKEIK 257


>gi|307545440|ref|YP_003897919.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
           DSM 2581]
 gi|307217464|emb|CBV42734.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
           DSM 2581]
          Length = 270

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 65/205 (31%), Gaps = 36/205 (17%)

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE-YEKNKE 262
            + +P+ A   ++   + + +R P    + ++L             + E +   Y +   
Sbjct: 89  EVPEPTEADCRRFHAAHPERFREPTRLEVRHVLLAAAP-------DDAEARDAGYRQG-- 139

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEY 319
                  R +EQL               +  ++F +LA+      S      LG      
Sbjct: 140 ------RRLIEQLT--------------EHPERFTELAQRHSACPSKDQGGELGWLQPGQ 179

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
                L  ++  L   G     +   +G+ +  +         +F+ V   + + +R   
Sbjct: 180 TV-PELDRALQHLP-VGLHDRPLASRYGWHVVVIDRRVEGREPAFERVVDRVRHCLREQA 237

Query: 380 ASEKVKEDYKRL-EEFLALGTSMDE 403
           +   ++     L  E    G  +DE
Sbjct: 238 SRRALRHYLLALVAEIGVKGIELDE 262


>gi|260663478|ref|ZP_05864368.1| peptidylprolyl isomerase [Lactobacillus fermentum 28-3-CHN]
 gi|260552019|gb|EEX25072.1| peptidylprolyl isomerase [Lactobacillus fermentum 28-3-CHN]
          Length = 325

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 32/194 (16%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI--------------EISNDE 252
             S + +   +  YK  Y +     +S         +++I                S+  
Sbjct: 65  KVSTSEVNSEYNAYKKEYGSSFSTVLSEEGLTAKSFKQQIRSNLLLKAAVRNYSTFSSSA 124

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-----KGKKFIQLAEEQGKSL 307
           L+ +++K + K  + E      ++  +++ A     +L      K K+F +LA+ +    
Sbjct: 125 LKKQWKKYEPKVQTAE------ILVGSKETAQSIIDTLNNTSGSKLKEFKKLAKSKSTDT 178

Query: 308 SDISLGSF-----SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +  S G       + +     +   + F+L      T  +    GY + ++         
Sbjct: 179 TTKSNGGVLSAFDNTDTSLPSAYRKAAFALKTGEYTTEPVKTDNGYYVIYMIKHPAKGKY 238

Query: 363 S--FQEVKKDIANQ 374
           S    ++K  I  Q
Sbjct: 239 SSHISDLKDQIVTQ 252



 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 34/170 (20%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           G+  V +    K+  S + +S KQ                        K++L  ++    
Sbjct: 18  GNKAVATTSGGKITESEYYSSMKQTSN--------------------GKQVLQQMILDKV 57

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L+   +  G +     V  E       +    K     F + L+ EG+  K +       
Sbjct: 58  LE---KQYGSKVSTSEVNSE-------YNAYKKEYGSSFSTVLSEEGLTAKSFKQQIRSN 107

Query: 159 LSRTDVVGMFVG-GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
           L    +           S+ L  Q K++  + ++ + +V +     +I D
Sbjct: 108 LL---LKAAVRNYSTFSSSALKKQWKKYEPKVQTAEILVGSKETAQSIID 154


>gi|50603672|gb|AAH77447.1| Unknown (protein for IMAGE:4058360) [Xenopus laevis]
          Length = 158

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAF----QSLKKG-KKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +  ++ EA E      Q +K G + F  LA +      + +   LGSF K  +      D
Sbjct: 73  ITRSKDEALELINGYIQKMKSGDEDFESLASQFSDCSSAKAGGDLGSFGKGAMQKP-FED 131

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L + G+ +  +    G  I 
Sbjct: 132 ASFAL-RPGEMSGPVFTDSGIHII 154


>gi|148227870|ref|NP_001084236.1| prolyl isomerase Pin1 b [Xenopus laevis]
 gi|7259613|gb|AAF43897.1|AF239760_1 prolyl isomerase Pin1 [Xenopus laevis]
          Length = 159

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAF----QSLKKG-KKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +  ++ EA E      Q +K G + F  LA +      + +   LGSF K  +      D
Sbjct: 74  ITRSKDEALELINGYIQKMKSGDEDFESLASQFSDCSSAKAGGDLGSFGKGAMQKP-FED 132

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L + G+ +  +    G  I 
Sbjct: 133 ASFAL-RPGEMSGPVFTDSGIHII 155


>gi|289432892|ref|YP_003462765.1| protein export protein [Dehalococcoides sp. GT]
 gi|288946612|gb|ADC74309.1| protein export protein, putative [Dehalococcoides sp. GT]
          Length = 422

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/423 (13%), Positives = 131/423 (30%), Gaps = 60/423 (14%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSF 56
            E  RK  R   A   L V+ +   + G+               +TV++VG  K   + F
Sbjct: 21  FEAQRKRQRIIFATG-LSVIGIVLALVGIGVYKGWYVDQYKPMHTTVLTVGDTKYNVAYF 79

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           +++ +   G  SQ            +      + + +     + +   ++G       + 
Sbjct: 80  VDALRHFTGGDSQ-----------YAYYFIDAVSERIQLNQLMVEKASEMGYTISDDEID 128

Query: 117 GEIARS-----PLFHGK------DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
             I  +     P            +K   + F  ++ +      E  +    +L   +  
Sbjct: 129 AAIEENSLTDVPAVRDIVRASLLTDKLKTEYFDPQVPQ----TAEQREALAMLLESENAA 184

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
              + G+        +A     E+ +                P++  +T  +        
Sbjct: 185 SDVLAGIITDEEFAAKAAELSLESNT------KTDSGSIGFKPAD-TITSLYGS-----E 232

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
             E    S   +D    +   ++S         +  E+    E      ++ P+++ A E
Sbjct: 233 ILEKYIFSTEGYDYALVQD-ADVSKQRA-YWLMEVLERKTDSEQIHTLGMLLPSEQVALE 290

Query: 286 AFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFSLAKK-GDFTP 340
               L  G+ +  LA E  +      +   +   +   +P+ ++AD IF+   +      
Sbjct: 291 VKARLAAGESWGDLAVEFSQLANVEENQGDMDWITFSSVPE-NVADIIFATDVELNTVLD 349

Query: 341 VIHGSFGYV-----IAHVSNIKPSFTVSFQEVKKDIANQM---RITKASEKVKEDYKRLE 392
            I     Y      I  + +I  +  +S  + K  I++++        +  + +      
Sbjct: 350 PIQDDTNYTRGGCWIVRLKSIDENRQLSEDDRKLLISDKLDQWTADLKAANLNKLTNTFS 409

Query: 393 EFL 395
           + L
Sbjct: 410 DEL 412


>gi|261197425|ref|XP_002625115.1| peptidyl-prolyl cis-trans isomerase pin4 [Ajellomyces dermatitidis
           SLH14081]
 gi|239595745|gb|EEQ78326.1| peptidyl-prolyl cis-trans isomerase pin4 [Ajellomyces dermatitidis
           SLH14081]
 gi|239606739|gb|EEQ83726.1| peptidyl-prolyl cis-trans isomerase pin4 [Ajellomyces dermatitidis
           ER-3]
 gi|327354945|gb|EGE83802.1| peptidyl-prolyl cis-trans isomerase pin4 [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 131

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF  +A E  +  +    SLG   +  +         
Sbjct: 42  VRHILCEKHSKKEEAAEKLRNGAKFDDVAREFSEDKARQGGSLGWKVRGSLHG-DFEKVA 100

Query: 330 FSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
           + L +               FGY I  V   K
Sbjct: 101 YEL-ETSTTANPKWAEVKTGFGYHIIMVEGRK 131


>gi|229367552|gb|ACQ58756.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Anoplopoma
           fimbria]
          Length = 156

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 27/110 (24%)

Query: 267 PEIRTVEQLVFP-----------------NQKEADEAFQS----LKKGK-KFIQLAEEQG 304
           PE      L+                    + EA E  Q     +K G+ KF  LA +  
Sbjct: 45  PEKVRCSHLLVKHTQSRRPSSWREQNITRTKDEALELIQKYIEEIKSGEEKFESLASQFS 104

Query: 305 ---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
               + +   LG F K  +      D+ F+L K GD +  +    G  I 
Sbjct: 105 DCSSAKNGGDLGQFGKGQMQKP-FEDASFAL-KVGDMSGPVFTESGVHII 152


>gi|227554800|ref|ZP_03984847.1| peptidylprolyl isomerase [Enterococcus faecalis HH22]
 gi|227176099|gb|EEI57071.1| peptidylprolyl isomerase [Enterococcus faecalis HH22]
 gi|315166858|gb|EFU10875.1| putative foldase protein PrsA [Enterococcus faecalis TX1341]
 gi|315575314|gb|EFU87505.1| putative foldase protein PrsA [Enterococcus faecalis TX0309B]
 gi|315581481|gb|EFU93672.1| putative foldase protein PrsA [Enterococcus faecalis TX0309A]
          Length = 362

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 73/246 (29%), Gaps = 32/246 (13%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I   ++ +   +  +        V          D+      +            +    
Sbjct: 56  ITVDDFYNQIKEQSTSQQAFSQMVIYKVFEEKYGDKVTDKDIQK-----------NFDEA 104

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV--HEKEKKIEISNDELQAEYEKNKEK 263
            +   A   ++ +  K      +  +             +  ++I++++L+  +      
Sbjct: 105 KEQVEAQGGKFSDALKQAGLTEKTFKKQLKQRAAYDAGLKAHLKITDEDLKTAWASFHP- 163

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEY 319
                    + +   ++ +A    + +  G  F ++A+E+    +    G      S+  
Sbjct: 164 -----EVEAQIIQVASEDDAKAVKKEITDGGDFTKIAKEKSTDTATKKDGGKIKFDSQAT 218

Query: 320 IPDVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDI 371
                + ++ F L K G+ +              Y +  ++  K        +++  K I
Sbjct: 219 TVPAEVKEAAFKL-KDGEVSEPIAATNMQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKI 277

Query: 372 ANQMRI 377
           A + ++
Sbjct: 278 AEETKL 283


>gi|34540238|ref|NP_904717.1| PPIC-type peptidyl-prolyl cis-trans isomerase [Porphyromonas
           gingivalis W83]
 gi|34396550|gb|AAQ65616.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Porphyromonas
           gingivalis W83]
          Length = 460

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 68/207 (32%), Gaps = 31/207 (14%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP----------SNAVLTQWFEKYKDNYRAPEYK 230
             ++ +     +D I +N   V    D           S   + ++F +     R  +  
Sbjct: 73  AVQKLFLNQAKIDSIEVNEADVNRYVDMYLADYIQQFGSKEKMEEYFNRKYTQIREEQRV 132

Query: 231 RI---SYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVE----------QL 275
            +     +     + ++ ++++  E++  +         + P    V+            
Sbjct: 133 EVRNSEIVRMMRKKIDENVKVTPSEIRQYFASLPQDSLPYIPTTVEVQLLAIKPVISLHE 192

Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
               +K   E    + +G+  F  LA    E+   +L     G  SK  + D   A  +F
Sbjct: 193 TDAIKKRLREFSDEINEGRRDFTTLARLYSEDSKTALQGGEYGFVSKASL-DAEFARVVF 251

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           SL      +P+I    GY I  +   +
Sbjct: 252 SLTDTKRVSPIIKTDDGYHIVQLIEKR 278


>gi|160890576|ref|ZP_02071579.1| hypothetical protein BACUNI_03019 [Bacteroides uniformis ATCC 8492]
 gi|317479882|ref|ZP_07938999.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_1_36]
 gi|156859575|gb|EDO53006.1| hypothetical protein BACUNI_03019 [Bacteroides uniformis ATCC 8492]
 gi|316903956|gb|EFV25793.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_1_36]
          Length = 520

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 63/432 (14%), Positives = 116/432 (26%), Gaps = 51/432 (11%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------VFPNQ 280
            Y    +       E +  E +  Y+K K          V+ +            +   +
Sbjct: 93  EYRRCLIKSYLTDEETAEQEARQYYDKMKSG-RRAGRVYVKHIFKYLPQNISGHTLREME 151

Query: 281 KEADEAFQSLKK--GK--KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
              D  +++L K  G    F    E+         +G         V   D +F L   G
Sbjct: 152 SRMDSIYRALAKEGGAVPSFDACVEQFSDEKKAFWVGWLQ----MPVEFEDIVFGL-NAG 206

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRI---TKASEKVKEDYKR-- 390
           + +       G  I  V   +    + F+ +K   I  Q R     K +    +  K+  
Sbjct: 207 EISRPFLTPQGIHIVKVLEQQE--ILPFERMKDKIIRCQTRRHGMDKGTRAFVDKLKKEY 264

Query: 391 --------LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
                   ++E LA G++   +   +           FA     G       +  + +  
Sbjct: 265 HYMPDKAGIDELLAKGSTSRVLFTLDGKAYGGKEFAGFAAVYPAGTRRQLEAFTVKTILD 324

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW----KTVKTAEE 498
                  L      AL  G    + + E       K   V     K +    ++    +E
Sbjct: 325 YENSRLELKHPEFCALVQGHRDSMLLAEITDREVGKRSVVDEAGLKAYFEAHRSDFHWDE 384

Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
              K   L     +  K  R   K +           R+             Q    P +
Sbjct: 385 PRYKGIVLHCTTKRVAKQVRKFLKQIPEE--EWMDAIRLTFNAGDTPKVRAEQGLFAPGD 442

Query: 559 MVK----CFPIENGLSYVVFKVTNSKVGPVQEKDKFISY---LTQMMNKDLLDSVIAYLK 611
                   F  +N    + F  T  +    +  D +      L       L    +A L+
Sbjct: 443 NAYVDELVFKGKNATPVLSFPFTAVQGRKQKGPDSWQEVREPLVTAYRNYLETHWVAKLR 502

Query: 612 SQYSVTVHDNLI 623
           +   V +   ++
Sbjct: 503 AAGKVEIDQEVL 514


>gi|184155805|ref|YP_001844145.1| peptidylprolyl isomerase [Lactobacillus fermentum IFO 3956]
 gi|183227149|dbj|BAG27665.1| peptidylprolyl isomerase [Lactobacillus fermentum IFO 3956]
          Length = 330

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 65/194 (33%), Gaps = 32/194 (16%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI--------------EISNDE 252
             S + +   +  YK  Y +     +S         +++I                S+  
Sbjct: 70  KVSTSEVNSEYNAYKKEYGSSFSTVLSEEGLTAKSFKQQIRSNLLLKAAVRNYSTFSSSA 129

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-----KGKKFIQLAEEQGKSL 307
           L+ +++K + K  + E      ++  +++ A     +L      K K+F +LA+ +    
Sbjct: 130 LKKQWKKYEPKVQTAE------ILVGSKETAQSIIDTLNNTSGSKLKEFKKLAKSKSTDT 183

Query: 308 SDISLGSFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +  S G     +         +   + F+L      T  +    GY + ++         
Sbjct: 184 TTKSNGGVVSAFDNTDTSLPSAYRKAAFALKTGEYTTEPVKTDNGYYVIYMIKHPAKGKY 243

Query: 363 S--FQEVKKDIANQ 374
           S    ++K  I  Q
Sbjct: 244 SSHISDLKDQIVTQ 257



 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 34/170 (20%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           G+  V +    K+  S + +S KQ                        K++L  ++    
Sbjct: 23  GNKAVATTSGGKITESEYYSSMKQTSN--------------------GKQVLQQMILDKV 62

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L+   +  G +     V  E       +    K     F + L+ EG+  K +       
Sbjct: 63  LE---KQYGSKVSTSEVNSE-------YNAYKKEYGSSFSTVLSEEGLTAKSFKQQIRSN 112

Query: 159 LSRTDVVGMFVG-GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
           L    +           S+ L  Q K++  + ++ + +V +     +I D
Sbjct: 113 LL---LKAAVRNYSTFSSSALKKQWKKYEPKVQTAEILVGSKETAQSIID 159


>gi|294775655|ref|ZP_06741163.1| PPIC-type PPIASE domain protein [Bacteroides vulgatus PC510]
 gi|294450499|gb|EFG18991.1| PPIC-type PPIASE domain protein [Bacteroides vulgatus PC510]
          Length = 441

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 56/160 (35%), Gaps = 19/160 (11%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLV------------FPNQKEADEAFQSLKKGKKFI 297
               +  Y + +++  + +   +  +                +++ D  +++L++G  F 
Sbjct: 98  EQAARRLYLQGEQRLQANDWIKIAHISKYLSQNASRQEEMRVRQQMDSVYEALREGADFA 157

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHGSFGYVIAHVSN 355
            LA       +  ++G        + ++ + I  L   ++   +   +   G  I    +
Sbjct: 158 TLARRYSDDEACKNVGGVLPWMPVNKNMQEWIDKLESLERNKISAPFYSPMGIHIVKWID 217

Query: 356 IKPSFTVSFQEVKKDIANQMRITKA---SEKVKEDYKRLE 392
            +     SF+E ++ + N +         E   E  + LE
Sbjct: 218 RRQGV--SFEEKREQLLNYLEKNGNCTWKELSAEQKEELE 255


>gi|281500878|pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|281500879|pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|317455039|pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
          Length = 167

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 50  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 109

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 110 LASQFSDCSSAKARGDLGAFSRGQMAKP-FEDASFAL-RTGEMSGPVFTDSGIHII 163


>gi|257418300|ref|ZP_05595294.1| ppiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T11]
 gi|257160128|gb|EEU90088.1| ppiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T11]
          Length = 342

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 83/262 (31%), Gaps = 30/262 (11%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV-LNNRHVPA 204
           I   ++ +   +  +        V          D+      + +  D    +  +    
Sbjct: 36  ITVDDFYNQIKEQSTSQQAFSQMVIYKVFEEKYGDKVTDKAIQKKFDDAKKQVEAQGGKF 95

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
               + A LT+  + +K   +  E  ++          +  ++I++++L+  +       
Sbjct: 96  SDALTQAGLTE--KSFKKQLKQAEAMQV--------GLKDHLKITDEDLKTAWASFHP-- 143

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYI 320
                   + +   ++ +A    + +  G  F ++A+++            +   S+   
Sbjct: 144 ----EVEAQIIQVASEDDAKAVKKEITDGGDFAKIAKDKSTDATTKKDGGKIKFDSQSTT 199

Query: 321 PDVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDIA 372
               + ++ F L K G+ +              Y +  ++  K        +++  K IA
Sbjct: 200 VPAEVKEAAFKL-KDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIA 258

Query: 373 NQMRITKASEKVKEDYKRLEEF 394
              ++   + + K     L+  
Sbjct: 259 EDTKLADQTFQAKVISDELKAA 280


>gi|299783438|gb|ADJ41436.1| Peptidylprolyl isomerase [Lactobacillus fermentum CECT 5716]
          Length = 330

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 32/194 (16%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI--------------EISNDE 252
             S + +   +  YK  Y +     +S         +++I                S+  
Sbjct: 70  KVSTSEVNSEYNAYKKEYGSSFSTVLSEEGLTAKSFKQQIRSNLLLKAAVRNYSTFSSSA 129

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-----KGKKFIQLAEEQGKSL 307
           L+ +++K + K  + E      ++  +++ A     +L      K K+F +LA+ +    
Sbjct: 130 LKKQWKKYEPKVQTAE------ILVGSKETAQSIIDTLNNTSGSKLKEFKKLAKSKSTDT 183

Query: 308 SDISLGSF-----SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +  S G       + +     +   + F+L      T  +    GY + ++         
Sbjct: 184 TTKSNGGVLSAFDNTDTSLPSAYRKAAFALKTGEYTTEPVKTDNGYYVIYMIKHPAKGKY 243

Query: 363 S--FQEVKKDIANQ 374
           S    ++K  I  Q
Sbjct: 244 SSHISDLKDQIVTQ 257



 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 34/170 (20%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           G+  V +    K+  S + +S KQ                        K++L  ++    
Sbjct: 23  GNKAVATTSGGKITESEYYSSMKQTSN--------------------GKQVLQQMILDKV 62

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L+   +  G +     V  E       +    K     F + L+ EG+  K +       
Sbjct: 63  LE---KQYGSKVSTSEVNSE-------YNAYKKEYGSSFSTVLSEEGLTAKSFKQQIRSN 112

Query: 159 LSRTDVVGMFVG-GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
           L    +           S+ L  Q K++  + ++ + +V +     +I D
Sbjct: 113 LL---LKAAVRNYSTFSSSALKKQWKKYEPKVQTAEILVGSKETAQSIID 159


>gi|295114096|emb|CBL32733.1| PPIC-type PPIASE domain. [Enterococcus sp. 7L76]
          Length = 342

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 79/245 (32%), Gaps = 30/245 (12%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV-LNNRHVPA 204
           I   ++ +   +  +        V          D+      + +  D    +  +    
Sbjct: 36  ITVDDFYNQIKEQSTSQQAFSQMVIYKVFEEKYGDKVTDKAIQKKFDDAKKQVEAQGGKF 95

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
               + A LT+  + +K   +  E  ++          +  ++I++++L+  +       
Sbjct: 96  SDALTQAGLTE--KSFKKQLKQAEAMQV--------GLKDHLKITDEDLKTAWASFHP-- 143

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYI 320
                   + +   ++ +A    + +  G  F ++A+++    +    G      S+   
Sbjct: 144 ----EVEAQIIQVASEDDAKAVKKEITDGGDFAKIAKDKSTDAATKKDGGKIKFDSQSTT 199

Query: 321 PDVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDIA 372
               + ++ F L K G+ +              Y +  ++  K        +++  K IA
Sbjct: 200 VPAEVKEAAFKL-KDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIA 258

Query: 373 NQMRI 377
              ++
Sbjct: 259 EDTKL 263


>gi|194017414|ref|ZP_03056025.1| putative peptidylprolyl isomerase [Bacillus pumilus ATCC 7061]
 gi|194010686|gb|EDW20257.1| putative peptidylprolyl isomerase [Bacillus pumilus ATCC 7061]
          Length = 257

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 9/146 (6%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           +     V +V + K+  + + ++     G + Q      + E A++  + K+ +D LV  
Sbjct: 64  IDDQKVVATVNQDKITGNEYNSALSTIQGQLQQSGQDPTSKEGAKA--VKKQTIDALVGQ 121

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARS-PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
             + Q  E  G++A   +V  ++      F        +  F   L + G+   +     
Sbjct: 122 ELILQDAEKKGIKASDKQVDKQLKEEKKQFK------DNAQFEEALKKSGLTMDQLKSDI 175

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQ 181
              +  +  V   +  +  S   +  
Sbjct: 176 ADSIKYSQYVDKEIKSVSVSEKDVKA 201


>gi|148825262|ref|YP_001290015.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittEE]
 gi|148715422|gb|ABQ97632.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittEE]
          Length = 311

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 66/194 (34%), Gaps = 34/194 (17%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDEL----QAEYEKNKEKYFSPE----IRTVE 273
           + +R     ++          ++ I+++ +E+    Q   E+ KEK  + +       V 
Sbjct: 112 NAFRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVR 171

Query: 274 QLVFP-----NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322
            ++       N  +A +    +          F   A +  K     + G       P+ 
Sbjct: 172 HILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPET 231

Query: 323 --VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                A ++   +K+G  +      FG+ I  V+ ++            D+  +    KA
Sbjct: 232 YAPQFAQTVVK-SKQGVISAPFKTEFGWHILEVTGVRDG----------DLTAEAYTQKA 280

Query: 381 SEKVKEDYKRLEEF 394
            E++     +L++ 
Sbjct: 281 YERLVN--TQLQDA 292


>gi|319639215|ref|ZP_07993966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Neisseria mucosa
           C102]
 gi|317399399|gb|EFV80069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Neisseria mucosa
           C102]
          Length = 254

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 21/204 (10%)

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
            R     +L N    A  D  +A +   F+  +  +         Y        E++  +
Sbjct: 65  TRLQTLEILKNEAFKAGLD-KDAEVQNQFKNVEAEF---------YANQYAVYLERQTAV 114

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
            + EL+  Y++         I  ++Q+ F +  E   A + L KG  F +L +       
Sbjct: 115 DDAELRRFYDQQTR------IIKLQQVSFASADEVRAAQELLLKGLSFEELMKRYPNPEQ 168

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGYVIAHVSNIK-PSFTVSFQE 366
               G  S + +P        F+   +GD T   I     + +  +S ++       F+ 
Sbjct: 169 KFD-GFISPQQLPPQLA--VAFADMTRGDVTHEPIQMENRFYLFKLSAVEHDPNAEPFEL 225

Query: 367 VKKDIANQMRITKASEKVKEDYKR 390
           V+  IA  ++  K + +++   K 
Sbjct: 226 VRNQIAQAVKQQKVNNQIERILKE 249


>gi|270295713|ref|ZP_06201913.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273117|gb|EFA18979.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 520

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 63/432 (14%), Positives = 116/432 (26%), Gaps = 51/432 (11%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------VFPNQ 280
            Y    +       E +  E +  Y+K K          V+ +            +   +
Sbjct: 93  EYRRCLIKSYLTDEETAEQEARQYYDKMKSG-RRAGRVYVKHIFKYLPQNISGHTLREME 151

Query: 281 KEADEAFQSLKK--GK--KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
              D  +++L K  G    F    E+         +G         V   D +F L   G
Sbjct: 152 SRMDSIYRALAKEGGAVPSFDACVEQFSDEKKAFWVGWLQ----MPVEFEDIVFGL-NAG 206

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRI---TKASEKVKEDYKR-- 390
           + +       G  I  V   +    + F+ +K   I  Q R     K +    +  K+  
Sbjct: 207 EISRPFLTPQGIHIVKVLEQQE--ILPFERMKDKIIRCQTRRHGMDKGTRAFVDKLKKEY 264

Query: 391 --------LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
                   ++E LA G++   +   +           FA     G       +  + +  
Sbjct: 265 HYMPDKAGIDELLAKGSTSRVLFTLDGKAYGGKEFAGFAAVYPAGTRRQLEAFTVKTILD 324

Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW----KTVKTAEE 498
                  L      AL  G    + + E       K   V     K +    ++    +E
Sbjct: 325 YENSRLELKHPEFCALVQGHRDSMLLAEITDREVGKRSVVDEAGLKAYFEAHRSDFHWDE 384

Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
              K   L     +  K  R   K +           R+             Q    P +
Sbjct: 385 PRYKGIVLHCTTKRVAKQVRKFLKQIPEE--EWMDAIRLTFNAGDTPKVRAEQGLFAPGD 442

Query: 559 MVK----CFPIENGLSYVVFKVTNSKVGPVQEKDKFISY---LTQMMNKDLLDSVIAYLK 611
                   F  +N    + F  T  +    +  D +      L       L    +A L+
Sbjct: 443 NAYVDELVFKGKNATPVLSFPFTAVQGRKQKGPDSWQEVREPLVTAYRNYLETHWVAKLR 502

Query: 612 SQYSVTVHDNLI 623
           +   V +   ++
Sbjct: 503 AAGKVEIDQEVL 514


>gi|167854677|ref|ZP_02477457.1| bifunctional heptose 7-phosphate kinase/heptose 1-phosphate
           adenyltransferase [Haemophilus parasuis 29755]
 gi|167854214|gb|EDS25448.1| bifunctional heptose 7-phosphate kinase/heptose 1-phosphate
           adenyltransferase [Haemophilus parasuis 29755]
          Length = 312

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/373 (12%), Positives = 109/373 (29%), Gaps = 88/373 (23%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           +    F ++  S A    +    V +V    +  S    +                  ++
Sbjct: 9   LFIAGFALFAFSSA---NAEERVVATVDGYPIMQSQVKQAL----------------GKK 49

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           A +    K  L+ ++    + + I++ G++ D+  V   +          N  ++   + 
Sbjct: 50  ANTEANRKAALETIIDDFVVQRAIKESGIKVDYAYVDQMMEDVAA----QNGITYGQLLD 105

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
            L  +GI+  +Y       L    V        ++     +    +   +   ++  +  
Sbjct: 106 ALDYQGISLSQYRQQLAHQLLMEQVRQQSIGNSIQVDPKDVQSLAKDMLDKAKINGTLET 165

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
                          T++   +      P       IL D+  K K + I+ D       
Sbjct: 166 VSA------------TEYRISHILIKTTP-------ILNDMQAKAKLLSITAD------- 199

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
                          ++ F    + +                 +    +    LG F+  
Sbjct: 200 -----------IKSGKITFEEAAKINSV---------------DYISGIDGGDLG-FNFL 232

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
              D + A+ I S +K    +      FG+ I  V++ +          + D      + 
Sbjct: 233 DAYDSTFAN-IASKSKIDVISSPFKSQFGWHILKVTDTR----------RGDRTEDAYLQ 281

Query: 379 KASEKVKEDYKRL 391
           +A E++ +   ++
Sbjct: 282 RAYEQLIDKQVQV 294


>gi|145630363|ref|ZP_01786144.1| stationary-phase survival protein SurA [Haemophilus influenzae
           R3021]
 gi|144984098|gb|EDJ91535.1| stationary-phase survival protein SurA [Haemophilus influenzae
           R3021]
          Length = 311

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 66/194 (34%), Gaps = 34/194 (17%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDEL----QAEYEKNKEKYFSPE----IRTVE 273
           + +R     ++          ++ I+++ +E+    Q   E+ KEK  + +       V 
Sbjct: 112 NTFRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVR 171

Query: 274 QLVFP-----NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322
            ++       N  +A +    +          F   A +  K     + G       P+ 
Sbjct: 172 HILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPET 231

Query: 323 --VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                A ++   +K+G  +      FG+ I  V+ ++            D+  +    KA
Sbjct: 232 YAPQFAQTVMK-SKQGVISAPFKTEFGWHILEVTGVRDG----------DLTAEAYTQKA 280

Query: 381 SEKVKEDYKRLEEF 394
            E++     +L++ 
Sbjct: 281 YERLVN--TQLQDA 292


>gi|212550918|ref|YP_002309235.1| peptidyl-prolyl cis-trans isomerase SurA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549156|dbj|BAG83824.1| peptidyl-prolyl cis-trans isomerase SurA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 480

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 16/153 (10%)

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFP---N 279
           +    +    I    ++    ++++  +++  Y +       F P    VE +       
Sbjct: 150 KKQAIREQGMIQAMQNKLVSGVKVTPSDIRNFYNQIPQDSLPFIPTTVEVEIITLKPLVT 209

Query: 280 QKEADEAFQSLKK--------GKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADS 328
            +E +   Q LK+         K+F  LA    + ++    G    F  +       A  
Sbjct: 210 LEEINNIKQKLKEYIELVTSGQKEFSTLARLYSEDINSAMKGGELNFVCKSSLSPEFAAV 269

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
            F L+     + ++   +GY I  +   K    
Sbjct: 270 AFELSNPKKVSRIVETEYGYHIIQLIEKKGDRI 302


>gi|315453271|ref|YP_004073541.1| hypothetical protein HFELIS_08670 [Helicobacter felis ATCC 49179]
 gi|315132323|emb|CBY82951.1| putative periplasmic protein [Helicobacter felis ATCC 49179]
          Length = 346

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 61/212 (28%), Gaps = 56/212 (26%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
            ++V    +         K+                        ++ ++ L+      Q 
Sbjct: 94  AITVNNDPITIYQIETQEKEHHIS-------------------RQQAVNALILQRIQAQE 134

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
           I+ + ++ +  ++  EI        + N      F+  LA EGIN   Y     K L   
Sbjct: 135 IKRLKIDIEDDKIDAEIENI----ARHNGMDMQDFLRTLASEGINPTTYKAQLKKQLETR 190

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
           +++   +     +N                                S   + +++  +K 
Sbjct: 191 ELLRNILLFNTNTN--------------------------------SETKMREYYNAHKS 218

Query: 223 NYRAP-EYKRISYILFDVHEKEKKIEISNDEL 253
            +  P E   I Y   D     K +E  N ++
Sbjct: 219 EFSVPSEIITIRYTAQDTQALTKALENRNLDI 250


>gi|229846544|ref|ZP_04466652.1| stationary-phase survival protein SurA [Haemophilus influenzae
           7P49H1]
 gi|229810637|gb|EEP46355.1| stationary-phase survival protein SurA [Haemophilus influenzae
           7P49H1]
          Length = 311

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 66/194 (34%), Gaps = 34/194 (17%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDEL----QAEYEKNKEKYFSPE----IRTVE 273
           + +R     ++          ++ I+++ +E+    Q   E+ KEK  + +       V 
Sbjct: 112 NTFRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVR 171

Query: 274 QLVFP-----NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322
            ++       N  +A +    +          F   A +  K     + G       P+ 
Sbjct: 172 HILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPET 231

Query: 323 --VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                A ++   +K+G  +      FG+ I  V+ ++            D+  +    KA
Sbjct: 232 YAPQFAQTVVK-SKQGVVSAPFKTEFGWHILEVTGVRDG----------DLTAEAYTQKA 280

Query: 381 SEKVKEDYKRLEEF 394
            E++     +L++ 
Sbjct: 281 YERLVN--TQLQDA 292


>gi|146281286|ref|YP_001171439.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas
           stutzeri A1501]
 gi|145569491|gb|ABP78597.1| probable peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas stutzeri A1501]
          Length = 344

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 17/142 (11%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------------GKKF 296
                Q  Y  N++++FS  +     ++     +  EA    ++             ++F
Sbjct: 169 DEAACQQYYNGNRQRFFSAPLLAARHILLACPADDAEARSLAREQALGLLQQLQAAPQRF 228

Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            +LA +     S     +LG  SK           +F L   G     +   +GY +  V
Sbjct: 229 AELALQHSACPSKEQGGALGQISKGQTV-PEFERQLFRLP-VGLCQQPLESRYGYHLVFV 286

Query: 354 SNIKPSFTVSFQEVKKDIANQM 375
                   + ++ V   I  ++
Sbjct: 287 DQRIEGEQLPYEIVAGTIRAEL 308


>gi|329957339|ref|ZP_08297859.1| hypothetical protein HMPREF9445_02737 [Bacteroides clarus YIT
           12056]
 gi|328523052|gb|EGF50155.1| hypothetical protein HMPREF9445_02737 [Bacteroides clarus YIT
           12056]
          Length = 510

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/442 (13%), Positives = 123/442 (27%), Gaps = 74/442 (16%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------VFPNQK 281
           Y    +        ++    +  Y+K K  + + ++R V  +            +     
Sbjct: 85  YRSRLIKSYLTDTVVTEKAARRLYDKMKSGHRAGQVR-VSHIFKYLPQNVSGAALRDAVA 143

Query: 282 EADEAFQSLKKGKK---FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
             D  ++ L++      F    E          +          V   D +F L+  G+ 
Sbjct: 144 RMDSIYEYLQRNPDSEAFDSCVERFSDEKQAFRVSWLQ----MPVEFEDVVFGLS-AGEM 198

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK-VKEDYKRLEEFLAL 397
           +       G  I  V         SF+ VK+++  +       +   +   ++L++    
Sbjct: 199 SQPFFTPQGIHIVKVLERLE--MPSFESVKEELMARRAHRHGVDSGAEAQVEKLKKEYRY 256

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKE----VAAIPYKEQLLFRVFGKDDPLSKD 453
                 +         +  L   AGK+  G +     AA P         F     L  +
Sbjct: 257 TPDKTGVDELINTGRTNRTLFTLAGKNYTGHDFARFAAAYPAGVHRQLDAFIMKTVLDYE 316

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLT----DVKKDWKTVKTAEEVSSKANQLVLE 509
           +T           ++++  P   R L  V       +       +  +  ++    L   
Sbjct: 317 NT-----------RLEQKHPD-LRCL--VRDYGNRLLADKITEQEIRKRAATDEAGLQAY 362

Query: 510 YSK------------EGKNFRDI----GKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
           + K            +G     +     K     L +  +    D     F      Q+F
Sbjct: 363 FEKHRSDYQWKEPRYKGIVLHGVSKRIAKQARKFLKSLPEAEWKDAIRLTFNAGAQPQIF 422

Query: 554 SGPVEMVK---------CFPIENGLSYVVFKVTNS---KVGPVQEKDKFISYLTQMMNKD 601
           +                 F  ++  S V F  T     KV    +  +    L       
Sbjct: 423 AEQGLFAPGDNAYVDDLVFKGKDAASMVSFPFTAVLGEKVKGPDDYREVRDRLVADYQNY 482

Query: 602 LLDSVIAYLKSQYSVTVHDNLI 623
           L +   A L++   V ++  ++
Sbjct: 483 LDNQWTARLRASAKVEINQEVL 504


>gi|303239800|ref|ZP_07326324.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
 gi|302592737|gb|EFL62461.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
          Length = 355

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 70/210 (33%), Gaps = 26/210 (12%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
                + +    D Y       +    + V  +     +S  E++  Y+K+     +  +
Sbjct: 147 EEEFKKTYNIGYDRYENILKDLMLVYKY-VEGELPTFSVSETEMKDYYKKSASAVDTVSV 205

Query: 270 RTV--------------EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS-LGS 314
           R +              EQ     + +AD+  + +K G    +LA +     +     G 
Sbjct: 206 RRIMFATVDLQTGKEFTEQEKKDKKAQADDVLEKIKAGGDAEKLAVDLSDDTTVKDNKGL 265

Query: 315 FSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           F      +       +      K GD T ++   +GY +  V +       ++ EVK  +
Sbjct: 266 FEVTSNSNTNIPGFQEWALE-HKIGD-TDILTTQYGYFVVKVEDRT-----TYDEVKDKV 318

Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSM 401
              +   K  E+++   K  +  +    S+
Sbjct: 319 KEAVETQKYLERLENWKKESQYDVKKNDSI 348


>gi|126322893|ref|XP_001363694.1| PREDICTED: similar to protein (peptidyl-prolyl cis/trans isomerase)
           NIMA-interacting 1 [Monodelphis domestica]
          Length = 159

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 273 EQLVFPNQKEADEAF----QSLKKGKK-FIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
           ++ +  +++EA E      Q +K G+  F  LA +      + +   LG+F +  +    
Sbjct: 71  QEKITRSKEEALELINGYIQKIKSGEDDFETLASQYSDCSSAKARGDLGTFGRGQMQKP- 129

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIA 351
             D+ F+L + G+ +  +    G  I 
Sbjct: 130 FEDASFAL-RTGEMSGPVFTDSGIHII 155


>gi|91774761|ref|YP_544517.1| hypothetical protein Mfla_0406 [Methylobacillus flagellatus KT]
 gi|91708748|gb|ABE48676.1| hypothetical protein Mfla_0406 [Methylobacillus flagellatus KT]
          Length = 55

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           SLA KG     I   FG+ I  + NI+ +    F+EVK ++  Q+++ K
Sbjct: 3   SLAPKGLTPEPIRTRFGWHIIELKNIRKAEPPPFEEVKNELIRQLQVRK 51


>gi|288556815|ref|YP_003428750.1| hypothetical protein BpOF4_19095 [Bacillus pseudofirmus OF4]
 gi|288547975|gb|ADC51858.1| hypothetical protein BpOF4_19095 [Bacillus pseudofirmus OF4]
          Length = 253

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 8/149 (5%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLVSGATL 99
            V +V  + +    ++ + + +  M+  + G   N E  +++   +   +L  L+    L
Sbjct: 61  VVATVNGEDIERDDYVRAVESQ-AMMYTQFGIDFNDEEGQAMLEEVKDGVLQGLIEDRLL 119

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  ED  +E     +  E+  +     +    S +     LA +G   ++  + + K L
Sbjct: 120 IQASED--VEVTDEEIDQELEMAMA---QSQIESQEQLEELLAEQGFTVEDLREDFEKQL 174

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
                +         S   +  A     E
Sbjct: 175 RVQKFIEEQTEAPEVSEEEIQSAYDQQVE 203


>gi|216264902|ref|ZP_03436894.1| conserved hypothetical protein [Borrelia burgdorferi 156a]
 gi|215981375|gb|EEC22182.1| conserved hypothetical protein [Borrelia burgdorferi 156a]
 gi|312148333|gb|ADQ30992.1| conserved hypothetical protein [Borrelia burgdorferi JD1]
          Length = 500

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/274 (10%), Positives = 75/274 (27%), Gaps = 37/274 (13%)

Query: 10  RTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVG---RQKV------PFS 54
           +         ++ + F         G+ D   S       +  G    Q +       F+
Sbjct: 20  KKVGMWGIFALILIVFGFIIAPLLPGIFDNAHSSG-----LKFGSYKGQPIYYKKDSKFA 74

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            ++N +      +      +     A  +   K +             ++          
Sbjct: 75  KYVNYYSNLYSRLQGNAKNINTDYNAWYLAFMKYV-----EDVAFLDLVKKYNFYISKEM 129

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   + +SP +      FS   +          + +  D   + +  ++V       +  
Sbjct: 130 LNKNLLKSPEYLDSSGNFSSKRYN---KASDYQKVKIYDDMVENILFSNVKIFLNSNLIF 186

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + L D  K      R + Y  L+ +        SN  +  + EK  + ++      I +
Sbjct: 187 PDSLFDMIKNMSTVERHISYFSLSYQDF------SNKEVISYAEKNLNLFKRLSLASIRF 240

Query: 235 ILFDVHEKEKKIEISN---DELQAEYEKNKEKYF 265
              +         ++    +EL   Y  +   + 
Sbjct: 241 KNMNDARTAHDKLLNKTPFEELAKLYSDDIANFK 274


>gi|320536418|ref|ZP_08036455.1| basic membrane family protein [Treponema phagedenis F0421]
 gi|320146728|gb|EFW38307.1| basic membrane family protein [Treponema phagedenis F0421]
          Length = 361

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQKI 71
           KI   VLF  F ++     L + S    +  +    R+ +         K  +  I +++
Sbjct: 3   KIITAVLF--FAVF--LGFLTAQSALQPIAQISIQTREPITLGQI----KSRVTAIEKEL 54

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G  +++         ++ +D+ +      Q     G+      V                
Sbjct: 55  GKKLSTAD------RRRFMDSFIEERLFAQAAIKEGIRITDSEVNQY------------- 95

Query: 132 FSHDVFVSRLARE---GINEKEYIDHYTK--MLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
                F + L+++      E E+ D+  +   +S   ++    G       L +      
Sbjct: 96  -----FNNILSQQMGKLTTEAEFADYIKETEKISLDQLMKKQNGM-----TLAEYKAFLK 145

Query: 187 FENRSVDYIVLN-NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
            +  +  Y++   +     +  P+++ +  ++E  K  +  P+  ++  +          
Sbjct: 146 TQLSTQRYVMQKKSAEFQKLKGPTDSQIRSYYELNKQIFFRPDTVKLFLVSIPKGNDPNA 205

Query: 246 IEISN---------------DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            +I                  +++++    K  Y + EI      +    + A +     
Sbjct: 206 AKIKAKGFNDQLKKSGKKAMADIKSKGNTPKAGYSAGEIY-----LAKTSETAKQL---- 256

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFS----KEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
             G     L E     ++ +S  + +    + ++     +  I +L+   D     +   
Sbjct: 257 --GLSMDALLEIFKMDINTVSEVNETPLDYQNFMVLAKDSAKILTLS---DVVEPDNTVT 311

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
            Y       +      + +    D+A +++  +  + +  D +
Sbjct: 312 LYETIKNMLMMQIQQKALETAITDLAAELKKPENYKMLVSDAE 354


>gi|50083929|ref|YP_045439.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase)
           [Acinetobacter sp. ADP1]
 gi|49529905|emb|CAG67617.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter sp. ADP1]
          Length = 95

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
           V  ++  ++  AD+  + ++ G  F ++A++      +     LG   K  +    +   
Sbjct: 6   VRHILVKDKDLADQLKKKIQDGADFTKIAKQYSTCNSAKRGGELGEVKKGQLV-PVIDKL 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +FS A++      I   FG+ +  + 
Sbjct: 65  VFSAAER-VLHGPIKSQFGFHLVEIK 89


>gi|299470956|emb|CBN79940.1| peptidyl prolyl cis/trans isomerase like [Ectocarpus siliculosus]
          Length = 308

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 64/181 (35%), Gaps = 15/181 (8%)

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIP 321
              EI     ++  ++  A+ A   +K G++F  +A +     S      LG F K  + 
Sbjct: 93  TGEEICRAAHVLCADEDAAEAALTRIKSGEQFGDVATDMSSCPSKDKGGDLGWFKKGQMV 152

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
                 + F     G    V    FG+ +  + +      +  Q   +++   + + K+ 
Sbjct: 153 -AEFEAACFE-NDPGTIVKV-QTQFGWHVVALLSR---AILPRQMAVEELGEILELAKSG 206

Query: 382 EKVKEDYKRLEEFLALGTSMDEI--SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
               +   +  +        +E+  ++ +  V++ L   +     + G+       K+ +
Sbjct: 207 AGDVDSKYQFVDVREE----EELGKAKLDGFVNLPLSKFEEWSDKLSGEGAILDAEKDTV 262

Query: 440 L 440
           +
Sbjct: 263 I 263


>gi|296121100|ref|YP_003628878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           limnophilus DSM 3776]
 gi|296013440|gb|ADG66679.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           limnophilus DSM 3776]
          Length = 354

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 68/165 (41%), Gaps = 14/165 (8%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE--------QLVFPNQKEADEAFQSL 290
                 + +I++  + AE+++   ++    +R  +        Q     +++  E    +
Sbjct: 189 AWYVYSQSQINDAAIAAEFKRQPARWNGTRLRARQLFLKWPAGQPDAATREKMAEIKTKI 248

Query: 291 KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
           + G+  ++ A     E   +     +G F        +++ + + L + G+    +    
Sbjct: 249 QAGQLSMEAAIRQYSESQSASQGGDVGWFGYRGRLPAAVSRAAY-LQQVGEVGQPVESPL 307

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G  +  V++I+P   +  ++ +K+I +++  ++ +E V +  +  
Sbjct: 308 GIHLIEVTDIRPGE-LGIEDARKEIFDELSQSRWNEIVTKSRESA 351


>gi|126138552|ref|XP_001385799.1| peptidylprolyl cis/trans isomerase [Scheffersomyces stipitis CBS
           6054]
 gi|126093077|gb|ABN67770.1| peptidylprolyl cis/trans isomerase [Scheffersomyces stipitis CBS
           6054]
          Length = 176

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 26/151 (17%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
             AVL ++ EKY+ N   P  +            + K+ +S+  ++    +    + SP+
Sbjct: 42  DTAVLNEYVEKYRANGHKPVIRE-----------DGKVRVSHLLIKHNQSRRPRSWKSPD 90

Query: 269 IRTVEQLVFPNQKEADEAFQSLKK----GKKFIQLAEEQGKSL---SDISLGSFSKEYIP 321
                  +   + EA +  + L+     G+K  +LAE +       +   LG F K  + 
Sbjct: 91  G------ITTTRDEAIQKLKQLQAKILNGEKLSELAESESDDSSHSTGGDLGFFGKGQM- 143

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +  ++ F L   G+ + ++    G  +  
Sbjct: 144 QPAFEEAAFGL-NVGEISDIVETDSGLHLLE 173


>gi|145632724|ref|ZP_01788458.1| thymidylate kinase [Haemophilus influenzae 3655]
 gi|145634545|ref|ZP_01790254.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittAA]
 gi|229844382|ref|ZP_04464522.1| stationary-phase survival protein SurA [Haemophilus influenzae
           6P18H1]
 gi|144986919|gb|EDJ93471.1| thymidylate kinase [Haemophilus influenzae 3655]
 gi|145268090|gb|EDK08085.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittAA]
 gi|229812631|gb|EEP48320.1| stationary-phase survival protein SurA [Haemophilus influenzae
           6P18H1]
          Length = 311

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 66/194 (34%), Gaps = 34/194 (17%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDEL----QAEYEKNKEKYFSPE----IRTVE 273
           + +R     ++          ++ I+++ +E+    Q   E+ KEK  + +       V 
Sbjct: 112 NAFRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVR 171

Query: 274 QLVFP-----NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322
            ++       N  +A +    +          F   A +  K     + G       P+ 
Sbjct: 172 HILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPET 231

Query: 323 --VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                A ++   +K+G  +      FG+ I  V+ ++            D+  +    KA
Sbjct: 232 YAPQFAQTVVK-SKQGVISAPFKTEFGWHILEVTGVRDG----------DLTAEAYTQKA 280

Query: 381 SEKVKEDYKRLEEF 394
            E++     +L++ 
Sbjct: 281 YERLVN--TQLQDA 292


>gi|50285435|ref|XP_445146.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524449|emb|CAG58046.1| unnamed protein product [Candida glabrata]
          Length = 173

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQ---KEADEAFQSL------KKGKKFIQLAEEQGKSLS- 308
           K+K+    P     E++    +   KE  E    L      KK   F  +A+E+    S 
Sbjct: 68  KHKDS-RRPASHRQEKITITKEEAIKELKEIQARLEEDQEQKKKHSFEAIAKERSDCSSF 126

Query: 309 --DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                LG F +  +   S   + F+L K  + + ++    G  +  
Sbjct: 127 KRGGDLGYFGRGEM-QPSFEKAAFAL-KIDEVSDIVESDSGVHLIK 170


>gi|33152289|ref|NP_873642.1| peptidyl-prolyl cis-trans isomerase [Haemophilus ducreyi 35000HP]
 gi|33148512|gb|AAP96031.1| survival protein SurA-like protein [Haemophilus ducreyi 35000HP]
          Length = 317

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 108/356 (30%), Gaps = 83/356 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V +V    V  S   +   Q+                  S    K  +++++    +
Sbjct: 28  EHVVATVNNIPVMESQVQSLLGQQKN----------------SKTDRKMAIEHIIDDILV 71

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            + I D G++ D+  V   I          N  ++   +  +  +GI+  +Y     + +
Sbjct: 72  QKTIADAGIQVDYKLVDKAIEDIAA----SNGITYGQLLDAIDNQGISLDQYRGQIAQQM 127

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +   V  M +                         I L+   V  +A        +  E+
Sbjct: 128 AMEQVRHMSIS----------------------QSIQLDPNEVQTLA-------KKMLEE 158

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            K   +  +     Y +   H   K   + ND                            
Sbjct: 159 DKAKGKLKKSMGTQYRI--SHILIKTTPVLND-------------------------AKA 191

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKS-LSDISLGSFSKEY--IPDVSLADSIFSLAKK 335
           + +       +K GK  F Q A+      +S    G     +  I D + A  I + AK+
Sbjct: 192 KAKLMRIAADIKAGKTTFEQAAKANSIDYISAADGGDLGYNFLDIYDPTFAK-IANKAKQ 250

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              +      FG+ I  V+  + +     ++     A ++   +  +++ +D+ ++
Sbjct: 251 NQISAPFKSQFGWHILKVTATQKADRT--EDSYNQFAYELLANQQGQEIAKDWVKI 304


>gi|307721945|ref|YP_003893085.1| SurA domain-containing protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306980038|gb|ADN10073.1| SurA domain protein [Sulfurimonas autotrophica DSM 16294]
          Length = 278

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/221 (8%), Positives = 61/221 (27%), Gaps = 60/221 (27%)

Query: 25  FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
           F                  V V  + +         + E           +++++A    
Sbjct: 11  FAFVNADVY------DGVAVVVEDKAITLLDIQKEMQAEH----------LDAKKAS--- 51

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
                 D L+     +  I    +      V+ +I +       +      ++ +   + 
Sbjct: 52  ------DILIRKKLEELEIAKRNISVSSAEVYDDIKKMAE---ANGLTISQLYDAIREQN 102

Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
           G+N +E+ +   + L    +                                     + +
Sbjct: 103 GLNSEEFKEKIKQKLLSQKLYAAI--------------------------------AMSS 130

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
           +++P++  + ++++ + D +  PE   +         + K+
Sbjct: 131 LSEPNDEEIKEYYKLHTDKFNHPESFSVIIYSAKDKSRLKE 171



 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 91/236 (38%), Gaps = 24/236 (10%)

Query: 169 VGGMRPSNLLL-DQAKRFYFENRSVDYIVLNN-RHVPAIADPSNAVLTQWFEK------- 219
           +   + S++L+  + +      R++          +  +A+ +   ++Q ++        
Sbjct: 45  LDAKKASDILIRKKLEELEIAKRNISVSSAEVYDDIKKMAEANGLTISQLYDAIREQNGL 104

Query: 220 YKDNYRAP-EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             + ++   + K +S  L+         E +++E++  Y+ + +K+  PE  +   +++ 
Sbjct: 105 NSEEFKEKIKQKLLSQKLYAAIAMSSLSEPNDEEIKEYYKLHTDKFNHPE--SFSVIIYS 162

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
            + +       LK+              +S      F  +  P ++   +I     +  F
Sbjct: 163 AKDK-----SRLKEKTDNPMF---YAPDISTQEQVLFYNKISPKLA---NILQKTPQDHF 211

Query: 339 TPV-IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           TP+   G  G++  ++ ++  S     + +K  I N +   K    + + + RL +
Sbjct: 212 TPILSDGKGGFMSFYIKSVAKSKETDLKSLKPQIMNAIMADKREAVLSDYFARLRD 267


>gi|254418583|ref|ZP_05032307.1| PPIC-type PPIASE domain protein [Brevundimonas sp. BAL3]
 gi|196184760|gb|EDX79736.1| PPIC-type PPIASE domain protein [Brevundimonas sp. BAL3]
          Length = 367

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 56/165 (33%), Gaps = 17/165 (10%)

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             PE   I   + +          S DE +  Y+   +++ +P +     ++   Q + +
Sbjct: 65  ETPEEALIR-AVLEAEILVD--APSRDECRRVYDHAPKRFCTPALTEASHILLAPQTQDE 121

Query: 285 EAFQ-----------SLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFS 331
            A+             L     +F  LA+      S    GS  +    D++   ++   
Sbjct: 122 AAWAEAQAAAKAAITELAAYPHRFADLAQRLSDCPSKGVGGSLGQISPGDLAAEVEAGLD 181

Query: 332 LAKKGDF-TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
             + G+  +  +   FG+ +  +        + F+ V   IA  +
Sbjct: 182 ALQDGETASEPVRSRFGWHVLRLDRRIEGRQLPFEHVLPRIALHL 226


>gi|329941154|ref|ZP_08290433.1| lipoprotein [Streptomyces griseoaurantiacus M045]
 gi|329299685|gb|EGG43584.1| lipoprotein [Streptomyces griseoaurantiacus M045]
          Length = 213

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 39/143 (27%), Gaps = 6/143 (4%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG--FVVNSERARSVGLDKKILDN 92
            S S       VG Q++  +   N  ++                 E AR+  L +  L  
Sbjct: 24  GSESHPGAAAVVGGQRITVAQLENRVEEVRSAQRDATADEAQYAQEIARTGSLTRDTLHT 83

Query: 93  LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
           LV    LD+  +D G+      V                    +  + L + G+      
Sbjct: 84  LVLDRVLDRAAKDAGVTVTERDVQAMRTSLE--QQAGGA--RGLRTAWLRQYGVAPARLD 139

Query: 153 DHYTKMLSRTDVVGMFVGGMRPS 175
           +     +    +       M  S
Sbjct: 140 ESLRTEVRAQKLAAALGADMNTS 162


>gi|124516599|gb|EAY58107.1| probable peptidil-prolyl cis-trans isomerase [Leptospirillum
           rubarum]
          Length = 289

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 16/148 (10%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-- 306
           ++ ++   Y K+++    P    V Q+VFP++K A          + F  L ++ G    
Sbjct: 120 TDSDIVNYYNKHQKDIKQPGYVDVRQVVFPDEKTAK---------RDFPLLKKKGGFKKV 170

Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                   +G   +  +P        F + + G  T  I    G     +        ++
Sbjct: 171 TKMFKGGPVGKIYEGTVP-PKFVSFFFGVPE-GSITGPIPLKDGIHYFKIDRSVKGVQLT 228

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391
             + ++ I N +R  +     +     L
Sbjct: 229 LDQAREGIRNYLRNRQNKTIYQTLVNHL 256



 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 12/74 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S +  VG   +                   +G   +    +   +  ++L+ +V  + L
Sbjct: 30  DSVLAKVGNTTISQGDLKKKLD--------SMGLASS----KDPNVTSELLNQMVDNSLL 77

Query: 100 DQFIEDIGLEADHG 113
                  GL+    
Sbjct: 78  AMQARKEGLDKTPE 91


>gi|145484021|ref|XP_001428033.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395116|emb|CAK60635.1| unnamed protein product [Paramecium tetraurelia]
          Length = 115

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 277 FPNQKEADEAFQSLKKGKK-FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSL 332
              +K   E    ++     F ++A+E+           LG F++  +      D  F+L
Sbjct: 35  ADAEKGIREIRAQVENNLNLFAKIAQERSECSSCQKGGDLGDFTRGQMQKQ-FEDVAFAL 93

Query: 333 AKKGDFTPVIHGSFGYVIA 351
            K G+ +  +    G+ I 
Sbjct: 94  -KVGELSQPVKSDSGWHII 111


>gi|254883668|ref|ZP_05256378.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_3_47FAA]
 gi|319642194|ref|ZP_07996854.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
 gi|254836461|gb|EET16770.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_3_47FAA]
 gi|317386180|gb|EFV67099.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
          Length = 446

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLV------------FPNQKEADEAFQSLKKGKKFI 297
               +  Y + +++  + +   +  +                +++ D  +++L +G  F 
Sbjct: 103 EQAARRLYLQGEQRLQANDWIKIAHISKYLSQNASRQEEMRVRQQMDSVYEALWEGADFA 162

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHGSFGYVIAHVSN 355
            LA       +  ++G        + ++ + I  L   ++   +   +   G  I    +
Sbjct: 163 TLARRYSDDEACKNVGGVLPWMPVNKNMQEWIDKLESLERNKISAPFYSPMGIHIVKWID 222

Query: 356 IKPSFTVSFQEVKKDIANQMRITKA---SEKVKEDYKRLE 392
            +     SF+E ++ + N +         E   E  + LE
Sbjct: 223 RRQGV--SFEEKREQLLNYLEKNGNCTWKELSAEQKEELE 260


>gi|256419700|ref|YP_003120353.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chitinophaga
           pinensis DSM 2588]
 gi|256034608|gb|ACU58152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chitinophaga
           pinensis DSM 2588]
          Length = 478

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/325 (9%), Positives = 80/325 (24%), Gaps = 77/325 (23%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
              VG + +  S         + +        +             I++ ++S   +   
Sbjct: 47  AAIVGDKIILRSDVEGEM---VNLSRNNADGSLPPNAPCM------IMEQIISQKVMVMQ 97

Query: 103 IEDIGLEADHGRVWGEIAR-SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
            E   L      V G+I      F       S +         G +  +  + + + +  
Sbjct: 98  AERDSLPVSESDVDGQIENRIRYFQDVYG--SPEKMKEV---TGYSIYQLKERFRQPIKE 152

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
             +       +  S                                 + + + ++F+   
Sbjct: 153 GLLAKAMQDKITSS------------------------------VKVTPSEVKKYFDAIP 182

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
            +        + Y   ++   +  I+    +   +Y  ++              +   +K
Sbjct: 183 KD-------SLQYYESELEIGQIVIQPKATKEMDQYAIDR--------------LLEFKK 221

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF----SKEYIPDVSLADSIFSLAKKGD 337
           +  E      K   F +LA    +                +   D     + F L K+ +
Sbjct: 222 QVQE------KTSDFGRLAILYSEDPGAKENKGVYILNRNDKQWDADFLAASFRL-KENE 274

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTV 362
            +  I   FGY +      +     
Sbjct: 275 ISSPIKSQFGYHLIQCIKRQGDNIT 299


>gi|283781300|ref|YP_003372055.1| hypothetical protein Psta_3534 [Pirellula staleyi DSM 6068]
 gi|283439753|gb|ADB18195.1| hypothetical protein Psta_3534 [Pirellula staleyi DSM 6068]
          Length = 816

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 98/317 (30%), Gaps = 61/317 (19%)

Query: 361 TVSFQEVKKDIANQMRITKASE----KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
                EV++ I NQ+    ASE     VK     L  F     S    +   K    +LP
Sbjct: 490 VKPLAEVREAILNQLAQPIASEMRTTAVKGVIDELRSFSRAYNSAKLKAETAKGPKPELP 549

Query: 417 LVDFAGKDVK---------------------GKEVAAIPYKEQLLFRVF------GKDDP 449
            +D      K                     GK + AI + +      F      G D  
Sbjct: 550 ALDLPALSKKYNLESGTTELMSAAESYESELGKNLIAIDFSQGFQQFDFAQIAYSGSDLL 609

Query: 450 LSKDHTVALPDGSY-----MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
            +    ++  DG +     ++ + +E  PA D   +EV  DV   +K  +       +A 
Sbjct: 610 YNPREMMSRGDGVFGNGSCIFWRTQE-EPAADVTFDEVKDDVIAFYKMKEALTLAKEEAQ 668

Query: 505 QLVLEYSKEG---KNFRDIGKNLGASLLT--TNQINRMDNENKFF-----------GYDG 548
           + V +    G   K   D  K +  +  +  T     M   +              G D 
Sbjct: 669 KYVDKVKAAGSVEKAVPDAAKVVKPAPFSWFTAGFTAMGMGSNGPTLSDVDGIPLAGDDF 728

Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--------KFISYLTQMMNK 600
              VF            + G    V ++ + +      ++        + +  +  +  +
Sbjct: 729 RRAVFDLKPGEACVAVDQPGKVVYVVRMISDEPSEEIRREKFLETGASQQVQQMAMIEAR 788

Query: 601 DLLDSVIAYLKSQYSVT 617
             +  ++  + ++YSV 
Sbjct: 789 QSMMKMLNAIDTEYSVK 805



 Score = 40.4 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 58/174 (33%), Gaps = 15/174 (8%)

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD----EIS 405
           I   +  +P+  V+F EVK D+    ++ +A    KE+ ++  + +    S++    + +
Sbjct: 629 IFWRTQEEPAADVTFDEVKDDVIAFYKMKEALTLAKEEAQKYVDKVKAAGSVEKAVPDAA 688

Query: 406 RREKIVS-----IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
           +  K             +          +V  IP       R      P      V  P 
Sbjct: 689 KVVKPAPFSWFTAGFTAMGMGSNGPTLSDVDGIPLAGDDFRRAVFDLKPGEACVAVDQPG 748

Query: 461 GSYMWVQIKESIPARDRKLEEV-LTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
                V++    P+     EE+      +   + +  +    +A Q +++    
Sbjct: 749 KVVYVVRMISDEPS-----EEIRREKFLETGASQQVQQMAMIEARQSMMKMLNA 797


>gi|242776498|ref|XP_002478848.1| peptidyl-prolyl cis/trans isomerase [Talaromyces stipitatus ATCC
           10500]
 gi|218722467|gb|EED21885.1| peptidyl-prolyl cis/trans isomerase [Talaromyces stipitatus ATCC
           10500]
          Length = 216

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAF----QSLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA E      Q +K G+ +   LA    +   +     LG F +  +      D
Sbjct: 115 ITRTKEEAIEILRGHEQRIKSGEIRLADLAVSESDCSSARKKGDLGFFGRGEM-QKEFED 173

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L + G+ + ++    G  +  
Sbjct: 174 AAFAL-QPGEISSIVETQSGVHLIE 197


>gi|325123356|gb|ADY82879.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 97

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 272 VEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           V  ++  ++  A++  + L+ G   F +LA++      +     LG   K  +    +  
Sbjct: 6   VRHILVKDKDLAEQLKKKLQSGAADFAKLAKQYSTCNSAKRGGELGEVKKGQLV-PVIDK 64

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            +F+ A++      I   FGY +  V 
Sbjct: 65  VVFTAAER-VLQGPIKSQFGYHLLEVK 90


>gi|290769658|gb|ADD61438.1| putative protein [uncultured organism]
          Length = 520

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 60/198 (30%), Gaps = 38/198 (19%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------VFPNQ 280
            Y    +       E +  E +  Y+K K          V+ +            +   +
Sbjct: 93  EYRRCLIKSYLTDEETAEQEARQYYDKMKSG-RRAGRVYVKHIFKYLPQNISGHTLREME 151

Query: 281 KEADEAFQSLKK--GK--KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
              D  +++L K  G    F    E+         +G         V   D +F L   G
Sbjct: 152 SRMDSIYRALAKEGGAVPSFDACVEQFSDEKKAFWVGWLQ----MPVEFEDIVFGL-NAG 206

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRI---TKASEKVKEDYKR-- 390
           + +       G  I  V   +    + F+ +K   I  Q R     K +    +  K+  
Sbjct: 207 EISRPFLTPQGIHIVKVLEQQE--ILPFERMKDKIIRCQTRRHGMDKGTRAFVDKLKKEY 264

Query: 391 --------LEEFLALGTS 400
                   ++E LA G++
Sbjct: 265 HYMPDKAGIDELLAKGST 282


>gi|90021692|ref|YP_527519.1| hypothetical protein Sde_2047 [Saccharophagus degradans 2-40]
 gi|89951292|gb|ABD81307.1| hypothetical protein Sde_2047 [Saccharophagus degradans 2-40]
          Length = 289

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 56/176 (31%), Gaps = 7/176 (3%)

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
           + +   Y+    +   + +K     ++ + ++  Y  N  K+    I+  E +    Q +
Sbjct: 105 DLKTKAYREELLVKAYLEQKVTPQPVTAEMVKKYYLDNPNKFGGGSIKQFEYIQVQIQAK 164

Query: 283 ADEA-----FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA--DSIFSLAKK 335
            D A     F  +   K + Q       +     +   S    P        SI +    
Sbjct: 165 EDAASLLKVFNEITANKNWAQAVNTIKSTNGAWVVAHKSASLNPKDLQEPLKSIVAKTGA 224

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           G   PV      Y +  V + KP       EV  +I   +   +  + V+E     
Sbjct: 225 GAVAPVDVNGLVYTLVKVLDEKPLALKPLAEVSGEIRKSLAPLQLKQAVREISDSA 280



 Score = 37.7 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           S   S  V +V    +       + ++ LG          N+E   +  L KK+LD+LV+
Sbjct: 34  SADSSEVVATVNGAPITSHELELAIERTLGA---------NAELFMTDELAKKLLDSLVA 84

Query: 96  GATLDQFIEDIGLEADH 112
              + Q  E + L AD 
Sbjct: 85  SKAIAQKSEAL-LSADD 100


>gi|326790212|ref|YP_004308033.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
 gi|326540976|gb|ADZ82835.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
          Length = 337

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 113/362 (31%), Gaps = 76/362 (20%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           +++  ++++    + +G    L   +  + V +V  +KV    +          +   + 
Sbjct: 4   ISRTLIMLVLASIIAFG----LTGCAKETIVATVNSEKVSEPLYRIFLWSTQRGLESILP 59

Query: 73  FVVNSERAR----SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
            + + +            ++ L ++     + Q  E+ G+          I  S      
Sbjct: 60  DIWDVDPIEGKTPEEFAKERALKSITYYVAVKQKAEEAGINKLTKEEKSAIKESA----- 114

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
             K   +     +   GI +K+Y            VV    G   P+   L +A +   E
Sbjct: 115 --KNYVETNKEFVTNYGIKQKDYEKFLEYGKLEEKVVSQLGGTYIPNEEELKEAMKVLEE 172

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
                                              + +     I+++L    +++     
Sbjct: 173 E--------------------------------GEFTS--SATITHVLIKNKDEQGNTLP 198

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
           S+ + +A                        +K A++       G+    LA +  +  +
Sbjct: 199 SDKDAEA------------------------KKRAEDVLNQALNGEDLTILARKYSEDAA 234

Query: 309 -DISLGSFS-KEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQ 365
              + G ++ K+   + SL + +F+ AK G   P +I  S GY I  V  +     V+ +
Sbjct: 235 VSTNDGQYTFKKGEMEESLEEVVFNEAKIGAVYPKLIETSMGYEIVKVEELNDMDEVTMK 294

Query: 366 EV 367
           E 
Sbjct: 295 EA 296


>gi|125975115|ref|YP_001039025.1| hypothetical protein Cthe_2633 [Clostridium thermocellum ATCC
           27405]
 gi|256003230|ref|ZP_05428222.1| hypothetical protein ClothDRAFT_0189 [Clostridium thermocellum DSM
           2360]
 gi|281418466|ref|ZP_06249485.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|125715340|gb|ABN53832.1| hypothetical protein Cthe_2633 [Clostridium thermocellum ATCC
           27405]
 gi|255992921|gb|EEU03011.1| hypothetical protein ClothDRAFT_0189 [Clostridium thermocellum DSM
           2360]
 gi|281407550|gb|EFB37809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|316939281|gb|ADU73315.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 1313]
          Length = 364

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 88/335 (26%), Gaps = 67/335 (20%)

Query: 40  SSTVVSVGRQKVPFSSF--INSWKQELGMISQKIGFVVNSERARSVGL---------DKK 88
           +S V +V  +K+    F     + +       ++    + E      +          +K
Sbjct: 37  TSYVGTVAGEKITTKEFKYFLGYVKIQMENDAQLQDQASKEAFWDSKIEGVDAKELAKQK 96

Query: 89  ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
            LD+            + GL  +   +            +  +F            G+  
Sbjct: 97  ALDSCKEFKIQLLKARERGLFLNDKDMQEIENSITTLLNQMAQFDQAA-----KNTGVEV 151

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
               +                      +      + +    + +  ++            
Sbjct: 152 MSAEEMLK-------------------DTYGVTIQEYKEILKDLRLVLKLVEDEQKNITI 192

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +   L   + + KD +     + I +   +       + +S D  +  YE          
Sbjct: 193 TEEELRNRYNENKDVFDKITVRHIIFYTINPKT---DVSLSEDAKKKAYEN--------- 240

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-DISLGSFSKEYIP--DVSL 325
                         A +A +   KG+    LA E  +    + + G      +   +  L
Sbjct: 241 --------------AKKALERANKGEDMEALALELSEDSGVEGNKGILEINSLKVNEPKL 286

Query: 326 ADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           ++ +      K GD T ++   +GY +  +     
Sbjct: 287 SNLVKWAYEHKVGD-TDIVETGYGYHVVKIEKRTE 320


>gi|172064366|ref|YP_001812017.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
 gi|171996883|gb|ACB67801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
          Length = 282

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 73/224 (32%), Gaps = 14/224 (6%)

Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
             V G   ++  ++   +   +  +          + A      A     +    +   A
Sbjct: 37  ATVNGTPITDAEVNAVLQASKQPDTPQIRQAIKNQLIAHVLIQQAAEKAKYGGKPEVQAA 96

Query: 227 PEYKRI-SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
            +  +  +     + +  K   +++ +++A Y++        E++    +V  +   A  
Sbjct: 97  MQVAKANAEAQLYLKDNIKPSPVTDAQVKARYDEIVGSLGKEEVKP-RIIVVKDAATAAT 155

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLADSIFSLAK 334
               LK G+ F  LA +  ++ +  + G                    + +A ++  L  
Sbjct: 156 VLAQLKAGQTFEALARQYSQAPTAGAGGELPWVSFKMPLVEGNTQGLPLPVAQAMTKLPA 215

Query: 335 KGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
            G     +  G+    I  +   +P+   ++   +  I  Q++ 
Sbjct: 216 GGVTADSIPLGNGARAIVKIDAKRPTQVPAYDTAQSTIRQQLQA 259


>gi|242023877|ref|XP_002432357.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative
           [Pediculus humanus corporis]
 gi|212517780|gb|EEB19619.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative
           [Pediculus humanus corporis]
          Length = 160

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 27/110 (24%)

Query: 267 PEIRTVEQLVFP-----------------NQKEADEAFQSLKK-----GKKFIQLAEEQG 304
           PE      L+                   ++ EA E  +S ++        F +LA++  
Sbjct: 49  PEQVQCSHLLVKHENSRRPSSWREEKITRSKSEALELLKSYREQIVSGAASFAELAQQYS 108

Query: 305 ---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
               +     LG F K  +         F+L K G+ +  +    G  I 
Sbjct: 109 DCSSAKRGGDLGPFGKGAMQKP-FEQVAFAL-KVGELSEPVDTDSGVHII 156


>gi|261380077|ref|ZP_05984650.1| conserved hypothetical protein [Neisseria subflava NJ9703]
 gi|284797293|gb|EFC52640.1| conserved hypothetical protein [Neisseria subflava NJ9703]
          Length = 254

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 76/204 (37%), Gaps = 21/204 (10%)

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
            R     VL N  + A  D  +A +   F+  +  +         Y        E++  +
Sbjct: 65  TRLQTLEVLKNEAIKAGLD-KDAEVQNQFKNVEAEF---------YANQYAAYLERQTAV 114

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
            + EL+  Y++         I  ++Q+ F +  E   A + L KG  F +L +       
Sbjct: 115 DDAELRRFYDQQTR------IIKLQQVNFASADEVRAAQELLLKGLSFEELMKRYPNPEQ 168

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGYVIAHVSNI-KPSFTVSFQE 366
           +       ++  P ++   + F+   +GD T   I     + +  +S + +      F+ 
Sbjct: 169 EFDGFISPQQLSPQLA---TAFADMNRGDVTHEPIQMENRFYLFKLSAVERDPNAEPFEL 225

Query: 367 VKKDIANQMRITKASEKVKEDYKR 390
           V+  IA  ++  K   ++K   K 
Sbjct: 226 VRNQIAQAVKRQKVENQIKRILKE 249


>gi|315149423|gb|EFT93439.1| putative foldase protein PrsA [Enterococcus faecalis TX0012]
          Length = 341

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/279 (10%), Positives = 87/279 (31%), Gaps = 32/279 (11%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIVLNNRHVPA 204
           I   ++ +   +  +        V          D+      + +       +  +    
Sbjct: 36  ITVDDFYNQIKEQSTSQQAFSQMVIYKVFEEKYGDKVTDKAIQKKFDDAKKQVEAQGGKF 95

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
               + A LT+  + +K   +  E  ++          +  ++I++++L+  +       
Sbjct: 96  SDALTQAGLTE--KSFKKQLKQTEAMQV--------GLKNHLKITDEDLKTAWASFHP-- 143

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIP 321
                   + +   ++ +A    + +  G  F ++A+++    +    G    F  +   
Sbjct: 144 ----EVEAQIIQVASEDDAKAVKKEITDGGDFTKIAKDKSTDATTKKDGGKIKFDSQSTI 199

Query: 322 DVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDIAN 373
              + ++ F L K G+ +              Y +  ++  K        ++   K+I  
Sbjct: 200 PTEVKEAAFKL-KDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYE---KEIKK 255

Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
                K S+   +     +E  A    + + + +  +  
Sbjct: 256 IAEKEKLSDTTFQATVISDELKAANVKIKDDAFKNALAG 294


>gi|91079624|ref|XP_967576.1| PREDICTED: similar to dodo [Tribolium castaneum]
 gi|270004471|gb|EFA00919.1| hypothetical protein TcasGA2_TC003825 [Tribolium castaneum]
          Length = 159

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 43/167 (25%), Gaps = 39/167 (23%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           +  L   +EK         Y    Y      +   K                     PE 
Sbjct: 3   DEQLPTGWEKRLSRSTGQHYYLNVYTKESQWDVPDKP------------AEPVSSSGPEQ 50

Query: 270 RTVEQLVFP-----------------NQKEADEA-----FQSLKKGKKFIQLAEEQG--- 304
                L+                    + EA E       Q ++    F  LA +     
Sbjct: 51  VQCSHLLVKHKDSRRPSSWREENITRTKDEALELVKSYREQIVQGKASFADLASKYSDCS 110

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            +     LGSF +  +      ++ F+L K G+ +  +    G  I 
Sbjct: 111 SAKRGGDLGSFKRGAMQKP-FEEASFAL-KVGELSEPVFTDSGVHII 155


>gi|319898023|ref|YP_004136220.1| survival protein sura homolog [Haemophilus influenzae F3031]
 gi|317433529|emb|CBY81912.1| survival protein SurA homolog [Haemophilus influenzae F3031]
          Length = 311

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 66/194 (34%), Gaps = 34/194 (17%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDEL----QAEYEKNKEKYFSPE----IRTVE 273
           + +R     ++          ++ I+++ +E+    Q   E+ KEK  + +       V 
Sbjct: 112 NAFRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVR 171

Query: 274 QLVFP-----NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322
            ++       N  +A +    +          F   A +  K     + G       P+ 
Sbjct: 172 HILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPET 231

Query: 323 --VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                A ++   +K+G  +      FG+ I  V+ ++            D+  +    KA
Sbjct: 232 YAPQFAQTVMK-SKQGVISAPFKTEFGWHILEVTGVRDG----------DLTAEAYTQKA 280

Query: 381 SEKVKEDYKRLEEF 394
            E++     +L++ 
Sbjct: 281 YERLVN--TQLQDA 292


>gi|289670755|ref|ZP_06491830.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 252

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 63/181 (34%), Gaps = 28/181 (15%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-----------------KEADEA 286
           +   I   +++A+++ +   Y   +   +  L    +                   A   
Sbjct: 78  ESARIDASQIKAQFDAHPHDY---DEVHLSHLFVALKPQGEARRGTPLTDAQALARAQRL 134

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK---GDFTPVIH 343
            Q L+ G  F +LA  +    S  + G      I   ++AD+  +  +    G  +  + 
Sbjct: 135 KQQLESGTPFAELAMRESDDGSTAAEGG-ELSPIFLRNVADAFVAPVQDLAVGQVSAPVR 193

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
           G  GY +  V   +P+   +    +  I  Q+R   A++ + E  ++         +++ 
Sbjct: 194 GPEGYHLIRVDARRPA---TLDSARGQIEVQLRDQAAADAL-EQLRQANPVRFDHAALEA 249

Query: 404 I 404
            
Sbjct: 250 A 250


>gi|296232841|ref|XP_002761761.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1-like isoform 2 [Callithrix jacchus]
          Length = 174

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 46  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 105

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 106 LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|149242227|pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
 gi|151567939|pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
 gi|281500875|pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|281500880|pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|281500881|pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|281500882|pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|281500890|pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|310689927|pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455036|pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455037|pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455038|pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455040|pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455041|pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455042|pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455043|pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455044|pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
          Length = 167

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 50  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 109

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 110 LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 163


>gi|114675259|ref|XP_001161914.1| PREDICTED: similar to Chain B, Structural Basis For The
           Phosphoserine-Proline Recognition By Group Iv Ww Domains
           isoform 1 [Pan troglodytes]
 gi|119604464|gb|EAW84058.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting 1,
           isoform CRA_b [Homo sapiens]
          Length = 174

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 46  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 105

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 106 LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|10120798|pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
           By Group Iv Ww Domains
          Length = 167

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 50  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 109

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 110 LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 163


>gi|71417797|ref|XP_810661.1| peptidyl-prolyl cis-trans isomerase/rotamase [Trypanosoma cruzi
           strain CL Brener]
 gi|70875226|gb|EAN88810.1| peptidyl-prolyl cis-trans isomerase/rotamase, putative [Trypanosoma
           cruzi]
          Length = 117

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 6/76 (7%)

Query: 281 KEADEAFQSLKKGK-KFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
            E  +  + +  G   F   A ++   G   S   LG F    +      D+  SL   G
Sbjct: 41  AELKQWAKRIADGDITFEDAARQRSDCGSYNSGGDLGFFGPGVMMKP-FEDAARSL-NVG 98

Query: 337 DFTPVIHGSFGYVIAH 352
           + + V+    G  I  
Sbjct: 99  EVSGVVRTESGLHIIK 114


>gi|241153259|ref|XP_002407024.1| peptidyl-prolyl cis-trans isomerase, putative [Ixodes scapularis]
 gi|215494006|gb|EEC03647.1| peptidyl-prolyl cis-trans isomerase, putative [Ixodes scapularis]
          Length = 176

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 273 EQLVFPNQKEADEA----FQSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
           E+ +  +++EA +      + +  GK  F +LA +      + +   LG+F +  +    
Sbjct: 88  EEKITRSKEEALDIIKGYREQIASGKATFEELATQFSDCSSAKNKGDLGTFGRGAMQKP- 146

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIA 351
             ++ F+L   G+ +  +    G  + 
Sbjct: 147 FEEAAFAL-NVGELSEPVFTDSGVHLI 172


>gi|148252853|ref|YP_001237438.1| hypothetical protein BBta_1292 [Bradyrhizobium sp. BTAi1]
 gi|146405026|gb|ABQ33532.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 295

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 80/219 (36%), Gaps = 20/219 (9%)

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQW----------FEKYKDNY--RAPEYKRISYIL 236
            +++    ++         PS A L +           + + K     R  E  R     
Sbjct: 73  TKALRQSFIDTFDEDKQRTPSEAELQKMVEAWVASEILYREGKALGVDRGDEMIRDRVAF 132

Query: 237 FDVHEKEKKIEI---SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
              +    ++ +   S ++L+A + +N  ++  PE  +       ++  A      +++ 
Sbjct: 133 KLQYLIFDQVRVPKPSEEQLRAWFTENHARFDEPERVSFLITPPSDEATAKRHLDDIREQ 192

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           ++  +L  +Q +++ D  + S S  +       + +  L+ +     V+    G+ +  +
Sbjct: 193 RESEEL-RDQTRAILDRPVPSLSAAF--GDQFGEGLLKLSTQQWT--VLQSKDGWHVVRL 247

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               P     F++++ D A      +  ++  E   RL+
Sbjct: 248 DARTPGAPAKFEDLRDDAAKIWHTEETRKQAWEAVSRLK 286


>gi|84684877|ref|ZP_01012777.1| Probable PpiC-type peptidyl-prolyl cis-trans isomerase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667212|gb|EAQ13682.1| Probable PpiC-type peptidyl-prolyl cis-trans isomerase
           [Rhodobacterales bacterium HTCC2654]
          Length = 414

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 18/176 (10%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
             W  +I  +       +        +      V  V    V         + +     +
Sbjct: 11  NGWAGRILTLCASAALGMMMAGSPATAQGQFVPVAKVNDSAVTVYE-----RNQRMAFLR 65

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
            +    +        + +  LD L++        E +G+ AD   V   +A         
Sbjct: 66  ILNAPGD--------ITQLALDQLINERIQLAEAERMGITADPEAVQNGMAEFAA----R 113

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDVVGMFVGGMRPSNLLLDQAKR 184
                + F + LA+ GI  + + D  T  +  R      F+  +  +   +D+A  
Sbjct: 114 GNLDVEQFGAFLAQAGIAFETFRDFVTAGIVWREVARAKFLPQVSITESEIDRAYA 169


>gi|306829356|ref|ZP_07462546.1| peptidyl-prolyl cis-trans isomerase [Streptococcus mitis ATCC 6249]
 gi|304428442|gb|EFM31532.1| peptidyl-prolyl cis-trans isomerase [Streptococcus mitis ATCC 6249]
          Length = 313

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 85/275 (30%), Gaps = 37/275 (13%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I E ++ D      +   V+            L    ++ + +    +    +     A 
Sbjct: 38  ITEHQFFDEVKNNPTAQQVL------------LNMTIQKVFEQQYGSEVTDKDVDDAVA- 84

Query: 206 ADPSNAVLTQWFEKY----KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
                    ++ + Y    +     PE ++       + E   K    ++     Y+K  
Sbjct: 85  -----EEQKKYGDSYNSVLQRAGMTPETRKAQIRTSKLVELAVKKAAESELTDEAYQKAF 139

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLG----SFS 316
           E Y      T + +   N+ +A E  +  K  G  F QLA+E          G      S
Sbjct: 140 ESYTPD--VTAQIIRLDNEDKAKEVLEKAKAEGADFAQLAKEYSNDDKTKENGGEITFDS 197

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIH------GSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                   +  + F+L   G  + VI        S  + I  V+      + + ++ K+ 
Sbjct: 198 ASTELPEQVKKAAFALDVNG-ISDVITATGTQAYSNQFYIIKVTKKTE-KSSNIEDYKEK 255

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           +   +   K ++         +E  A    + + +
Sbjct: 256 LKTIILTQKQNDSAFVQGVIGKELQAANIKVKDQA 290


>gi|298384794|ref|ZP_06994353.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_14]
 gi|298261938|gb|EFI04803.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_14]
          Length = 514

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 10/164 (6%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGK--KFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
           P+  T   L    Q   D  +Q ++      F +L +             + +       
Sbjct: 136 PQTITSRHLQ-EEQARMDSIYQVIQNQPSVDFARLVDRFSDD----KRCRWIESLQTTSE 190

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             ++ FSLAK G+ +       G  I  V + K     +++ V   + N++R     +  
Sbjct: 191 FEEAAFSLAK-GEISKPFFTPEGIHILKVIDRKE--VPAYEVVSDSLLNRLRRQPLDKGT 247

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
           +   ++L++      +M+ +    +    +  L    G+   G+
Sbjct: 248 EAIVEQLKKEYQYIPNMESLEEVLQKGGTERALFTINGQAYTGE 291


>gi|22218833|pdb|1J6Y|A Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana
          Length = 139

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 50/117 (42%), Gaps = 13/117 (11%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQ 298
            +++ S+  ++ +  + K  +  PE +    ++   ++ A E  +S+++        F +
Sbjct: 25  DQVKASHILIKHQGSRRKASWKDPEGK---IILTTTREAAVEQLKSIREDIVSGKANFEE 81

Query: 299 LA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           +A    +   +     LGSF +  +      ++ ++L K GD + ++    G  I  
Sbjct: 82  VATRVSDCSSAKRGGDLGSFGRGQMQKP-FEEATYAL-KVGDISDIVDTDSGVHIIK 136


>gi|147817758|emb|CAN66666.1| hypothetical protein VITISV_031726 [Vitis vinifera]
          Length = 143

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 14/99 (14%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG-------KKFIQLAEEQG-----KSLSDISLGSFSKE 318
               ++   Q + +EA++ L+ G           + A++Q             LG F + 
Sbjct: 46  KARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKQQNIQNVHSGKKGGDLGWFPRG 105

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            +      D  FS    G  +     + GY I      K
Sbjct: 106 KMAGP-FQDVAFS-TVIGATSAPFKSTHGYHIILCEGRK 142


>gi|169845229|ref|XP_001829334.1| hypothetical protein CC1G_00513 [Coprinopsis cinerea okayama7#130]
 gi|116509399|gb|EAU92294.1| hypothetical protein CC1G_00513 [Coprinopsis cinerea okayama7#130]
          Length = 174

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQSLKK-----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           +   ++EA E  +  +        KF +LA+      S      LG F +  +      D
Sbjct: 89  ITRTKEEAIEILKGYEAQIGGDPAKFAELAQAHSDCSSHSHGGDLGWFGRGQMQKP-FED 147

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L + G  + VI    G  + 
Sbjct: 148 ATFAL-EVGKMSDVISTDSGVHLI 170


>gi|15675810|ref|NP_269984.1| foldase protein PrsA [Streptococcus pyogenes M1 GAS]
 gi|19746923|ref|NP_608059.1| foldase protein PrsA [Streptococcus pyogenes MGAS8232]
 gi|71911545|ref|YP_283095.1| foldase protein PrsA [Streptococcus pyogenes MGAS5005]
 gi|46396706|sp|P60812|PRSA2_STRP1 RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|46396707|sp|P60813|PRSA2_STRP8 RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|13623038|gb|AAK34705.1| conserved hypothetical [Streptococcus pyogenes M1 GAS]
 gi|19749171|gb|AAL98558.1| conserved hypothetical [Streptococcus pyogenes MGAS8232]
 gi|71854327|gb|AAZ52350.1| protein export protein prsA precursor [Streptococcus pyogenes
           MGAS5005]
          Length = 309

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 22/211 (10%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T +V M    +  S+   +       +   +  ++            S+  + + +++ 
Sbjct: 29  NTKLVSMKGDTITVSDFYNETKNTELAQKAMLSLVISRVFETQYANKVSDKEVEKAYKQT 88

Query: 221 KDNY------------RAPEYKRISYILFDVHEKEKKIEISNDEL-QAEYEKNKEKYFSP 267
            D Y              PE  +    L  + E   K +  N+ + + +Y +  + Y   
Sbjct: 89  ADQYGTSFKTVLAQSGLTPETYKKQIRLTKLVEYAVKEQAKNETISKKDYRQAYDAYTP- 147

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
              T E + F  +++A  A +++K  G  F  +A+E+  +    +  +F        +  
Sbjct: 148 -TMTAEIMQFEKEEDAKAALEAVKAEGADFAAIAKEKTTAADKKTTYTFDSGETTLPAEV 206

Query: 327 DSIFSLAKKGDFT------PVIHGSFGYVIA 351
               S  K+G+ +              Y I 
Sbjct: 207 VRAASGLKEGNRSEIITALDPATSKRTYHII 237


>gi|146321102|ref|YP_001200813.1| parvulin-like peptidyl-prolyl isomerase [Streptococcus suis
           98HAH33]
 gi|145691908|gb|ABP92413.1| Parvulin-like peptidyl-prolyl isomerase [Streptococcus suis
           98HAH33]
          Length = 255

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 71/236 (30%), Gaps = 26/236 (11%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
             +  S            +   +  ++ N          S   + + ++K  +   A   
Sbjct: 4   NTITVSEFYEKVKTNSQAQQVLLSMVISNVFENQYGDKVSAEEVNKEYDKKAEQLGASFN 63

Query: 230 KRISYILFDVHEKEKKI-----------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             +S         +++I           + +  EL  E  K     ++PE+ T   +   
Sbjct: 64  AALSSAGLTEESYKEQIRTNKLVEYAVKQAAEKELTDENYKAAYDAYTPEV-TARVIKLA 122

Query: 279 NQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSK----EYIPDVSLADSIFSLA 333
           ++ +A E   + +  G  F QLA++     +    G   K           +  ++F+L 
Sbjct: 123 DEAKAKEVLAAAQAEGADFAQLAKDNSTDTTTKDNGGEVKFDSTSTTVPAEVQKAVFAL- 181

Query: 334 KKGDFTPVIHGSF-------GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             G     +  S         Y +  +          +++ K  +   +   K  +
Sbjct: 182 DAGQVGASVISSVDMKTYTTSYYVVKLDAKSEKSAK-WEDYKDKLKEIILAQKQRD 236


>gi|260912727|ref|ZP_05919213.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Pasteurella
           dagmatis ATCC 43325]
 gi|260633105|gb|EEX51270.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Pasteurella
           dagmatis ATCC 43325]
          Length = 311

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/391 (14%), Positives = 109/391 (27%), Gaps = 109/391 (27%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            K     L   F I     +  + +    V +V    V  S            +    G 
Sbjct: 7   IKSIFFALVGLFAI-----STTTQAAERVVATVNGIPVLES-----------QVKANSGK 50

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                     G  +  LD  +    + Q I++ G++ ++ +V   I          N  +
Sbjct: 51  K---------GNRQAALDKAIDDILVQQAIQNSGVKVNYAQVDQIIEGIAA----QNGLT 97

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           +  F+  L  +GI+   Y         R  +                       E R   
Sbjct: 98  YGQFLDALDYQGISYNTY---------RQQIANQL----------------LMTEVR--- 129

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
                N+ +    D +   +    ++                                 L
Sbjct: 130 -----NQAIGQSIDVTREQVEALGKQ--------------------------------LL 152

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEAD--EAFQSLKKGK-KFIQLAEEQ 303
           Q   EK  EK  S +   V  ++          Q +A   +    +  GK  F   A + 
Sbjct: 153 QEAKEKGTEKKVSGKQYEVRHILLKLNPLLNDTQAKAQLSQIRADIMAGKMTFADAALKY 212

Query: 304 GKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            K     + G       P+        ++ + +K+G  +      FG+ I  V+N +   
Sbjct: 213 SKDYLSGANGGSLGFAFPETYVGPFQKTVIT-SKQGVISAPFKTEFGWHILEVTNTRDG- 270

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             +    ++    Q+  ++  +  K+  K L
Sbjct: 271 DRTLDAYRQQAYEQLINSQVKDAEKDWVKAL 301


>gi|298206780|ref|YP_003714959.1| putative exported peptidyl-prolyl cis-trans isomerase [Croceibacter
           atlanticus HTCC2559]
 gi|83849412|gb|EAP87280.1| putative exported peptidyl-prolyl cis-trans isomerase [Croceibacter
           atlanticus HTCC2559]
          Length = 496

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 75/219 (34%), Gaps = 27/219 (12%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVH---EKEKKIEISNDELQAEYE-------- 258
             VL  + +  +  +RA  ++                  IEI+ +E++  +         
Sbjct: 156 EKVLNFYQKDNEGEFRAELFEINKQNKLAGEMQRSIVDGIEITPEEVREYFNGIPKEDRP 215

Query: 259 ------KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
                 +  +    PEI   E+    ++   +     L  G  F   A    +     + 
Sbjct: 216 LFGDEIEIAQIIIQPEIPQAERQRVIDRLN-EMRRDVLDNGASFATKAVLYSQDTGSRAN 274

Query: 313 GS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
           G     +++        D+ FSL ++G+ +      FG+ I  V  I+        +V++
Sbjct: 275 GGQYSLTRKDPFVKEFKDAAFSL-QEGEISEPFETEFGFHILMVDKIRGQTV----DVRQ 329

Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRR 407
            +       ++    ++    L+  +  GT + ++ + +
Sbjct: 330 VLLVPDTTPESVNAARKQIDSLKTEINKGTITFEDAAVQ 368


>gi|325922613|ref|ZP_08184364.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
           19865]
 gi|325546908|gb|EGD18011.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
           19865]
          Length = 292

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 27/171 (15%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-----------------KE 282
               +   I   ++QA++  +   Y   +   +  +    Q                   
Sbjct: 114 ARTRENAHIDAAQVQAQFNAHPHDY---DEVRLSHVFVALQPQGDARRGTPLSDAQALAR 170

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDI-SLGSFSKEYIPDVS--LADSIFSLAKKGDFT 339
           A +  + L  G  F ++A+ +    S     G  S  ++ +V+   A  + +L   G+ +
Sbjct: 171 AQQLKRQLDSGTPFEEVAKRESDDGSTAAEGGELSSIFLRNVADVFAAPVQALG-VGEVS 229

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
             + G  GY +  V    P+   + +  +  I  Q+R   A+  ++   + 
Sbjct: 230 APVRGPEGYHLIRVDARVPA---TLETARGQIEVQLRDQAATAALERLRQA 277


>gi|167628081|ref|YP_001678581.1| parvulin-like peptidyl-prolyl isomerase domain-containing protein
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167598082|gb|ABZ88080.1| parvulin-like peptidyl-prolyl isomerase domain protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 92

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLAD 327
              L+  ++ E  +  + + +GK  F + A++     S      LG+FS+  +       
Sbjct: 5   ARHLLVQSESECKQIKKDISEGKITFEEAAKKHSLCPSGARGGDLGTFSQGQMV-PEFDK 63

Query: 328 SIFS--LAKKGDFTPVIHGSFGYVIAHVSNI 356
            +F+  L K       +   FGY +  +++ 
Sbjct: 64  VVFNDELHK---VHGPVQTQFGYHLLEITSR 91


>gi|38258251|sp|Q9LEK8|PIN1_DIGLA RecName: Full=Peptidyl-prolyl cis-trans isomerase Pin1;
           Short=PPIase Pin1; AltName: Full=DlPar13; AltName:
           Full=Rotamase Pin1
 gi|8670992|emb|CAB94994.1| peptidyl-prolyl cis-trans isomerase [Digitalis lanata]
          Length = 118

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 275 LVFPNQKEADEAFQSLKK-----GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLA 326
           +    + +A    QSL++        F  LA        +     LG F +  +      
Sbjct: 32  ISATTRDDAVSQLQSLRQELLSDPASFSDLASRHSHCSSAKRGGDLGPFGRGQMQKP-FE 90

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAH 352
           ++ F+L K G+ + ++    G  I  
Sbjct: 91  EATFAL-KVGEISDIVDTDSGVHIIK 115


>gi|195131267|ref|XP_002010072.1| GI15719 [Drosophila mojavensis]
 gi|193908522|gb|EDW07389.1| GI15719 [Drosophila mojavensis]
          Length = 164

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQS-----LKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA    +      +     F +LA        +     LG F +  +       
Sbjct: 79  ITRTKEEAQMLLEIYRNKIVNNEATFEELARSYSDCSSAKRGGDLGKFGRGQM-QAPFEK 137

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L K G  + ++    G  I 
Sbjct: 138 AAFAL-KVGQLSDIVDTDSGLHII 160


>gi|149914655|ref|ZP_01903185.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter sp.
           AzwK-3b]
 gi|149811448|gb|EDM71283.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter sp.
           AzwK-3b]
          Length = 411

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 67/202 (33%), Gaps = 26/202 (12%)

Query: 17  FLVVLFVPFLI-----WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
           FL  L +P ++     WG++    + +  + VV V  Q +          Q+   +    
Sbjct: 4   FLAALALPAVMATSMSWGIAAPASAQNLFAPVVKVNDQAITGYEI-----QQRARMLTLF 58

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
               N              + L+            GL  +   +         F  + N 
Sbjct: 59  RSPGNPVEL--------AREQLIEERLKVDAARAAGLVLEDADIR---VGMEEFASRAN- 106

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
            + + F+  L   G++E+ Y +     ++ R  V   F   +  S+  L++A+    E+ 
Sbjct: 107 MTAEEFIGALEGAGVSEQSYREFVRAGMTWRELVRARFAPRVSVSDADLERARAALTEDS 166

Query: 191 SVDYIVLNNRHVPAIADPSNAV 212
            V  ++     +     P +A 
Sbjct: 167 GVRVLL---SEIIMPITPQDAE 185


>gi|295689679|ref|YP_003593372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
           ATCC 21756]
 gi|295431582|gb|ADG10754.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
           ATCC 21756]
          Length = 452

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/408 (9%), Positives = 114/408 (27%), Gaps = 79/408 (19%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
             S    V    +     +   +    ++    G     E      + ++ L +L+    
Sbjct: 57  SESVAAVVNDDIISSYDLMQRMR----LLMATSGMQPTQENL--PQIQQEALRSLIDERL 110

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
             Q +  +       +    I  +       +K   +          +   +        
Sbjct: 111 QMQELRRV-----EKQQKITIIST-------DKEVDEQVADIAQSNKMTSDQ-------- 150

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L ++ V          + L  D + + + + R    + +               +  +  
Sbjct: 151 LKQSLVQQGIGLDTWRAQLRADSSWQSWIQGRYGSRLRI-----------GEDQIKAYQR 199

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           +  ++   P+Y+     L        ++ ++                             
Sbjct: 200 RLAESAAKPQYQISEVFLDASRVGGMEVAVN----------------------------- 230

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
               A +    +++G  F  +A +      + +   +G  ++  +P     D      + 
Sbjct: 231 ---GAAQLIAQMQQGAPFAAVARQFSGSATAANGGDVGWVNQGEMPTE--VDEALEQLRP 285

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           G  +  I    G  I ++ + +     +  ++K  +A  +       +V    K L +  
Sbjct: 286 GQLSRPIQVKDGVYIIYLRDKRAGSKTAIVDLK-QVAAPLPADATEAQVAAATKLLTDLR 344

Query: 396 ALGTS---MDEISRRE-KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
               S   ++ ++ +   +V+ DL   +        +E A+     Q+
Sbjct: 345 PKINSCQTLETVAGKVDGLVAGDLGEAEITDLAPAFQEAASKLDIGQI 392


>gi|219118821|ref|XP_002180177.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408434|gb|EEC48368.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 92

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           T   ++  N  + ++    L K   F ++A++      +    SLGSF    +       
Sbjct: 2   TARHILVKNPDDIEKIRGELAK-DSFAKVAQQFSTCPSASQGGSLGSFYPGTMVK-EFDA 59

Query: 328 SIFS-LAKKGDFTPVIHGSFGYVIAHVSNI 356
            IF    K G+    +   FG     V   
Sbjct: 60  VIFDPETKLGEVVGPVQTQFGNHFIVVDKR 89


>gi|223933646|ref|ZP_03625624.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Streptococcus suis
           89/1591]
 gi|253751970|ref|YP_003025111.1| foldase protein PrsA precursor [Streptococcus suis SC84]
 gi|253753795|ref|YP_003026936.1| foldase protein PrsA precursor [Streptococcus suis P1/7]
 gi|253755329|ref|YP_003028469.1| foldase protein PrsA precursor [Streptococcus suis BM407]
 gi|330833037|ref|YP_004401862.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Streptococcus suis
           ST3]
 gi|223897676|gb|EEF64059.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Streptococcus suis
           89/1591]
 gi|251816259|emb|CAZ51887.1| foldase protein PrsA precursor [Streptococcus suis SC84]
 gi|251817793|emb|CAZ55545.1| foldase protein PrsA precursor [Streptococcus suis BM407]
 gi|251820041|emb|CAR46257.1| foldase protein PrsA precursor [Streptococcus suis P1/7]
 gi|319758335|gb|ADV70277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Streptococcus suis
           JS14]
 gi|329307260|gb|AEB81676.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Streptococcus suis
           ST3]
          Length = 333

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 74/242 (30%), Gaps = 26/242 (10%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++ M    +  S            +   +  ++ N          S   + + ++K  + 
Sbjct: 31  IITMKGNTITVSEFYEKVKTNSQAQQVLLSMVISNVFENQYGDKVSAEEVNKEYDKKAEQ 90

Query: 224 YRAPEYKRISYILFDVHEKEKKI-----------EISNDELQAEYEKNKEKYFSPEIRTV 272
             A     +S         +++I           + +  EL  E  K     ++PE+ T 
Sbjct: 91  LGASFNAALSSAGLTEESYKEQIRTNKLVEYAVKQAAEKELTDENYKAAYDAYTPEV-TA 149

Query: 273 EQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSK----EYIPDVSLAD 327
             +   ++ +A E   + +  G  F QLA++     +    G   K           +  
Sbjct: 150 RVIKLADEAKAKEVLAAAQAEGADFAQLAKDNSTDTTTKDNGGEVKFDSTSTTVPAEVQK 209

Query: 328 SIFSLAKKGDFTPVIHGSF-------GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           ++F+L   G     +  S         Y +  +          +++ K  +   +   K 
Sbjct: 210 AVFAL-DAGQVGASVISSVDMKTYTTSYYVVKLDAKSEKSAK-WEDYKDKLKEIILAQKQ 267

Query: 381 SE 382
            +
Sbjct: 268 RD 269


>gi|157690981|ref|YP_001485443.1| peptidylprolyl isomerase [Bacillus pumilus SAFR-032]
 gi|157679739|gb|ABV60883.1| possible peptidylprolyl isomerase [Bacillus pumilus SAFR-032]
          Length = 256

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 52/154 (33%), Gaps = 9/154 (5%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           +     V +V + K+  + + ++     G + Q      + E A++  + K+ +D LV  
Sbjct: 63  IDDQKVVATVNQDKITGNEYNSALSTIQGQLQQSGQDPTSKEGAKA--VKKQTIDALVGQ 120

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARS-PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
             + Q  E  G++A    V  ++      F        +  F   L + G+   +     
Sbjct: 121 ELILQDAEKKGIKASDKEVDKQLKEEKKQFK------DNAQFEEALKKSGLTMDQLKSDI 174

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
              +  +  V   +     S   +      Y + 
Sbjct: 175 ADSIKYSQYVDKEIKSASVSEKDVKAYYDQYADE 208


>gi|254473455|ref|ZP_05086852.1| SurA N-terminal domain family protein [Pseudovibrio sp. JE062]
 gi|211957571|gb|EEA92774.1| SurA N-terminal domain family protein [Pseudovibrio sp. JE062]
          Length = 313

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 15/128 (11%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S  V  V  + +         + +L  ++ +    +           +K  D L+  A  
Sbjct: 31  SKIVAVVNGRPITSYELQQ--RSKLISLTTRAPSSIA---------KRKAKDELIDEALK 79

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               + +G+     +V    A       +  K S   F   L++ G+N +         +
Sbjct: 80  LAEAKRVGVSISDSKVDDAFATI----AQRVKMSPSQFKQALSQSGVNPRTLKSRLRAEI 135

Query: 160 SRTDVVGM 167
           S ++VV  
Sbjct: 136 SWSEVVMQ 143


>gi|61358821|gb|AAX41625.1| protein NIMA-interacting 1 [synthetic construct]
          Length = 163

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 46  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 105

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 106 LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|325479322|gb|EGC82418.1| conserved domain protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 303

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/392 (13%), Positives = 112/392 (28%), Gaps = 104/392 (26%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           ++ +R  +   +    L  L +            S + +  V  V  +++    +    K
Sbjct: 1   MKNLRAITNKLIFYAILAFLVLT-------GCKRSSNKTDAVAVVDGKEISSKDYSKELK 53

Query: 62  QELGMISQKIGFVVNSERAR-----SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                 S+  G    SE+ +        L K++LD+++    +   +E   ++ D   V 
Sbjct: 54  FYQSYYSKLYGDNYLSEKNKNGLTNDEILRKELLDSMIKDKIMLSDLEKNKIKLDDNNVI 113

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
                                               D+  K ++  D +G  V  +  + 
Sbjct: 114 K---------------------------------LTDNLKKSMNGEDSLGANVDALNANG 140

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L ++   F    R   Y         +     ++ +  +++K K               
Sbjct: 141 NLFNEII-FNDAIRKSHY-----EMFVSKQSVRDSDVLDFYKKNKKY------------- 181

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
                            Q  Y+ N              +VF ++ EA +  +++   KKF
Sbjct: 182 -----------------QKMYKYNL-------------IVFDDENEAKDIKKNITNAKKF 211

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +   +     S  +    + E+            L +K   + V   +  Y+IA +++ 
Sbjct: 212 NEYLNK-----SVRNYDIVNSEFAYSDDEVLKASKLTEKNRPSDVFKYNDKYIIAMINSY 266

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
             +        K      +   KA E      
Sbjct: 267 NENENELLMNAKS-----VYQKKAYEDYLNKL 293


>gi|323485490|ref|ZP_08090836.1| hypothetical protein HMPREF9474_02587 [Clostridium symbiosum
           WAL-14163]
 gi|323401138|gb|EGA93490.1| hypothetical protein HMPREF9474_02587 [Clostridium symbiosum
           WAL-14163]
          Length = 332

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 70/197 (35%), Gaps = 31/197 (15%)

Query: 226 APEYKR------ISYILFDVHEKEKKIEISNDELQAEYEKN----------------KEK 263
           +PE +         Y      E  + + +S ++++A +E                  +  
Sbjct: 116 SPEERSEMAAAAAEYFGNLTAEDIEHMGVSEEDVRAVFEDYCLAEKLVEELTKGIDLEVS 175

Query: 264 YFSPEIRTVEQLVFPNQKEADEA-FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
               ++ TV Q    +++ A+     + ++   F + A + G S +   LG   +     
Sbjct: 176 DSEAKVITVMQAETADRQAAENLSLAAAQENADFEKCASDAGLSATTRQLGRKEES---- 231

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
               D+ F+L+  G  + VI  +  Y +    +       +    +K I  + R  KA +
Sbjct: 232 QEFEDAAFALS-AGQVSQVIESNGTYYVIKCISDYDEEATA---ARKKIIFEERKRKAFK 287

Query: 383 KVKEDYKRLEEFLALGT 399
           ++ + ++        G 
Sbjct: 288 EIYDSFREGINLTYSGD 304



 Score = 38.4 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV     K    ++        A  L L  ++E  +F     + G S  TT Q+ R +  
Sbjct: 173 EVSDSEAKVITVMQAETADRQAAENLSLAAAQENADFEKCASDAGLS-ATTRQLGRKEES 231

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
            +F         F+     V      NG  YV+  +++        + K I
Sbjct: 232 QEFE-----DAAFALSAGQVSQVIESNGTYYVIKCISDYDEEATAARKKII 277


>gi|145628832|ref|ZP_01784632.1| thymidylate kinase [Haemophilus influenzae 22.1-21]
 gi|144979302|gb|EDJ88988.1| thymidylate kinase [Haemophilus influenzae 22.1-21]
          Length = 246

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 65/194 (33%), Gaps = 34/194 (17%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDEL----QAEYEKNKEKYFSPE----IRTVE 273
           + +R     ++          ++ I ++ +E+    Q   E+ KEK  + +       V 
Sbjct: 47  NTFRQQIANQMVMGAVRNKAIQESIGVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVR 106

Query: 274 QLVFP-----NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322
            ++       N  +A +    +          F   A +  K     + G       P+ 
Sbjct: 107 HILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPET 166

Query: 323 --VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                A ++   +K+G  +      FG+ I  V+ ++            D+  +    KA
Sbjct: 167 YAPQFAQTVVK-SKQGVISAPFKTEFGWHILEVTGVRDG----------DLTAEAYTQKA 215

Query: 381 SEKVKEDYKRLEEF 394
            E++     +L++ 
Sbjct: 216 YERLVN--TQLQDA 227


>gi|116621076|ref|YP_823232.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224238|gb|ABJ82947.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 850

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADS 328
           +  LV  + +E+      L  G  F  LA E+    + +    LG+     + +  +  +
Sbjct: 28  LRILVLNSAEESARVRAQLANGADFAVLAREKSVDATSLDGGLLGNVDPSTLRE-EIRTA 86

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           +  LA  G  +PV     G+ I  V  
Sbjct: 87  LQGLA-PGQISPVFRLPTGFAIVKVLA 112


>gi|262371759|ref|ZP_06065038.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205]
 gi|262311784|gb|EEY92869.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205]
          Length = 96

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
           V  ++  ++  A++  + ++ G  F ++A++      +     LG   K  +    +   
Sbjct: 6   VRHILVKDKDLAEQLKKRIQSGADFSKIAKQYSTCNSAKRGGELGEVKKGQLV-PVIDKL 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +F+ A++      I   FG+ +  + 
Sbjct: 65  VFTAAER-ILHGPIKSQFGFHLVEIK 89


>gi|294898700|ref|XP_002776345.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
 gi|239883255|gb|EER08161.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
          Length = 84

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 14/88 (15%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQ---GKSLSDISLGSFSKEYIPDV 323
           E   V  +++          + LK  K  F ++A  +   G   +   LG F +  +   
Sbjct: 3   EKVRVSHILY--------MIEKLKADKSLFPEMAMARSDCGSYKNGGDLGYFDRGEM-QR 53

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIA 351
              ++ FSL + G+ +  +    G  + 
Sbjct: 54  PFEEAAFSL-EVGELSGPVETESGVHVL 80


>gi|332187280|ref|ZP_08389019.1| hypothetical protein SUS17_2464 [Sphingomonas sp. S17]
 gi|332012701|gb|EGI54767.1| hypothetical protein SUS17_2464 [Sphingomonas sp. S17]
          Length = 296

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 1/137 (0%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           + S  EL+A Y  + + Y +    T+ + + P   +A  A  +L+ G     L  +    
Sbjct: 140 QPSAAELRAWYVAHPDTYAAEGTMTLHEWIVPGAADAARAVAALRAGTPAATLGLKTSGR 199

Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
           + D     F+       +L  +I    + G+ +  IH + G+ I  +    P     F  
Sbjct: 200 VDDGEEYYFAARIHLGPALF-AIARRMRAGEVSEPIHAADGFHILAMVANAPPVPTPFAV 258

Query: 367 VKKDIANQMRITKASEK 383
            +  +   ++  K +  
Sbjct: 259 ARDQVLRDVQADKIARL 275



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 41/128 (32%), Gaps = 12/128 (9%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
            L ++   + ++                +V    +  +  I           Q++G + +
Sbjct: 32  VLGLIIAGYGLFTAQGTRVGGIAPENAATVNGAPILRADLI-----------QQVGSLYS 80

Query: 77  SERAR-SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
              A+ S    +K LD+++      Q   ++GL AD   V   +  +       +  +  
Sbjct: 81  ISFAQASAAQRRKALDDMIREELHVQRGIEVGLPADDIDVRAALVGATDAQVAQDTLTEQ 140

Query: 136 VFVSRLAR 143
              + L  
Sbjct: 141 PSAAELRA 148


>gi|312900280|ref|ZP_07759592.1| putative foldase protein PrsA [Enterococcus faecalis TX0470]
 gi|311292641|gb|EFQ71197.1| putative foldase protein PrsA [Enterococcus faecalis TX0470]
          Length = 342

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 76/241 (31%), Gaps = 44/241 (18%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN------ 223
             +   +      ++   +      ++            ++  + + F++ K+       
Sbjct: 34  STITVDDFYNQIKEQSTSQQAFSQMVIFKVFEEKYGDKVTDKDIQKSFDEAKEQVEAQGG 93

Query: 224 ---------------YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
                          ++    +R +Y        +  ++I++++L+  +           
Sbjct: 94  KFSDALKQAGLTEKAFKKQLKQRAAY----DAGLKAHLKITDEDLKTAWASFHP------ 143

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVS 324
               + +   ++ +A    + +  G  F ++A+E+    +    G      S+       
Sbjct: 144 EVEAQIIQVASEDDAKAVKKEITDGGDFTKIAKEKSTDAATKKDGGKIKFDSQATTVPAE 203

Query: 325 LADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDIANQMR 376
           + ++ F L K G+ +              Y +  ++  K        +++  K IA + +
Sbjct: 204 VKEAAFKL-KDGEVSEPIAATNMQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEETK 262

Query: 377 I 377
           +
Sbjct: 263 L 263


>gi|303283972|ref|XP_003061277.1| peptidyl-prolyl cis-trans isomerase [Micromonas pusilla CCMP1545]
 gi|226457628|gb|EEH54927.1| peptidyl-prolyl cis-trans isomerase [Micromonas pusilla CCMP1545]
          Length = 210

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 11/104 (10%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKK------FIQLAEEQGKSLS---DISLGSFSKE 318
           E  T   ++  ++  A    + L  G +      F + A +  +  S     SLG+F   
Sbjct: 109 EEATASHILVKDRSLAVSLLERLNDGPQDNIEDRFAREAGKYSECPSKSKGGSLGTFKPG 168

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
            +      D++F      +    +   FGY +  V++       
Sbjct: 169 QMVK-EFNDAVFD-GPVMEIQGPVQTQFGYHLILVTDRVEKEAK 210


>gi|240949661|ref|ZP_04753996.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus minor
           NM305]
 gi|240295919|gb|EER46595.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus minor
           NM305]
          Length = 317

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/372 (13%), Positives = 103/372 (27%), Gaps = 76/372 (20%)

Query: 21  LFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           L V F+   GLS +LF+      V +V    +  S    +                  ++
Sbjct: 9   LLVAFVATLGLSQSLFAA-EERVVATVDGNMIMESQVARAL----------------GKK 51

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           A +    K  L++++    + + I+  G++ D+ RV   I          N  ++   + 
Sbjct: 52  ANTEANRKAALESIIDEMLVQKAIQQSGVKVDYRRVDQAIEEIAA----RNGLTYGQLLD 107

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L  +GI+  +Y     + +    V    +G                             
Sbjct: 108 ALDYQGISLNQYRQQIAQQMMMEAVRHQSIG----------------------------- 138

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
                    +   +                 +          K K +  +   +     K
Sbjct: 139 ----KSIQVNPEEVRA-------------QAQALMAKDKAAGKLKAVSGTEPRISHILIK 181

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319
                   + +     +  + K     F+   K      ++   G  L    L  +   +
Sbjct: 182 TTPVLNDAQAKAKLNSIIADIKAGKTTFEEAAKANSVDYVSAADGGDLGFNFLDIYDPAF 241

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
               +        AK+G  T      FG+ I  V++ +     +     +    Q+   +
Sbjct: 242 ANAAAK-------AKQGQITAPFKSQFGWHILKVTDSRQG-DRTEDAYAQRAYEQLANQQ 293

Query: 380 ASEKVKEDYKRL 391
           A    K+  K L
Sbjct: 294 AEAASKDWVKAL 305


>gi|229496559|ref|ZP_04390273.1| peptidyl-prolyl cis-trans isomerase family protein [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316456|gb|EEN82375.1| peptidyl-prolyl cis-trans isomerase family protein [Porphyromonas
           endodontalis ATCC 35406]
          Length = 461

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/375 (13%), Positives = 123/375 (32%), Gaps = 46/375 (12%)

Query: 157 KMLSRTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
           + L+   +      +  +   + +++             Y+  N + + A    S   L 
Sbjct: 71  EQLAVQMLFLNQAKIDSITVDDAMIN------------RYVEANIQGMIAEVG-SKEKLE 117

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEK---KIEISNDELQAEYEKNKEKYFS--PEI 269
           ++F K     R  + ++          ++K    I +S  E++A +           P  
Sbjct: 118 EYFNKSLTQIREDQRRQAKSGEIVRAMQQKLVSNISVSPSEIRAYFASIPTDSLPYIPTR 177

Query: 270 RTVEQLV---FPNQKEADEAFQSLKK--------GKKFIQLAEEQGKS----LSDISLGS 314
             V+++V        E D   Q L++           F  LA    +     L+    G 
Sbjct: 178 LEVQKIVRKPIVKLSEIDRIKQKLREYSEEVNSGKTSFSTLARLYSEDTRTALNGGEYGF 237

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE--VKKDIA 372
            +K  + +   A  +F +      +P+I    GY I  +   +    ++F+   ++  +A
Sbjct: 238 VAKTSL-ESEFARILFDMPNNKRVSPIIQSEEGYHIVQIIEKR-GDLINFRHILLRPKVA 295

Query: 373 NQM------RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
           ++       ++   + ++       E  +A  +  +E S  E ++        +AG    
Sbjct: 296 DEALETEVTKLDSIAGQITSGALSFEAAVAQYSQDEETSNSEGLLVNTNYQSTYAGSSFF 355

Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
             E        ++   +   +   +        +   + V+++    A    L E    +
Sbjct: 356 PLEELPQDISREVA-NLKVGELSRAFVMINEKGNREVLIVKLRNKHDAHRATLTEDYQTI 414

Query: 487 KKDWKTVKTAEEVSS 501
           K+     K  +E+  
Sbjct: 415 KEMALQQKRNQELDD 429


>gi|5453898|ref|NP_006212.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Homo
           sapiens]
 gi|114675261|ref|XP_001161990.1| PREDICTED: hypothetical protein LOC745021 isoform 2 [Pan
           troglodytes]
 gi|296232839|ref|XP_002761760.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1-like isoform 1 [Callithrix jacchus]
 gi|297703517|ref|XP_002828684.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1-like [Pongo abelii]
 gi|3024406|sp|Q13526|PIN1_HUMAN RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1; AltName: Full=Peptidyl-prolyl cis-trans isomerase
           Pin1; Short=PPIase Pin1; AltName: Full=Rotamase Pin1
 gi|3891861|pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
 gi|34810641|pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
 gi|1332710|gb|AAC50492.1| Pin1 [Homo sapiens]
 gi|12804093|gb|AAH02899.1| Peptidylprolyl cis/trans isomerase, NIMA-interacting 1 [Homo
           sapiens]
 gi|47115245|emb|CAG28582.1| UBL5 [Homo sapiens]
 gi|54695532|gb|AAV38138.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
           [Homo sapiens]
 gi|61358816|gb|AAX41624.1| protein NIMA-interacting 1 [synthetic construct]
 gi|119604463|gb|EAW84057.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting 1,
           isoform CRA_a [Homo sapiens]
 gi|123990187|gb|ABM83904.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting 1
           [synthetic construct]
 gi|123999297|gb|ABM87225.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting 1
           [synthetic construct]
 gi|158255584|dbj|BAF83763.1| unnamed protein product [Homo sapiens]
 gi|168279071|dbj|BAG11415.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [synthetic
           construct]
 gi|1589005|prf||2209428A peptidyl-Pro isomerase
          Length = 163

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 46  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 105

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 106 LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|325295072|ref|YP_004281586.1| SurA domain [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065520|gb|ADY73527.1| SurA domain [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 283

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 26/165 (15%)

Query: 43  VVSVGRQKVPFSSF-INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
           V  V  + + +S     +    +  +                   K   D+L+    L  
Sbjct: 27  VAVVNGEPILYSELLDYAKTNRINNL-------------------KAARDSLIERKILLT 67

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
             +  GL      +   +     F       S + F   L +EG+  +E  +   + L  
Sbjct: 68  EAKSEGLAVSDEELNRALEN---FIKNSGFKSKEEFEKALKKEGLTLEEVKEKLKEQLLV 124

Query: 162 TDVVG-MFVGGMRPSNL--LLDQAKRFYFENRSVDYIVLNNRHVP 203
             ++G      +R S++       ++     R V YI + ++   
Sbjct: 125 AKLIGRNVKSKIRVSDIEVEKVCKEKKKKPVREVYYIYVKDKQKA 169



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 52/131 (39%), Gaps = 12/131 (9%)

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSL 325
           R V  +   ++++A+   + L  G  F ++A+E  +      +   LG  +K  +    L
Sbjct: 156 REVYYIYVKDKQKANRIMEILDSGIPFEKVAKEYSEDKATAQNGGYLGKVTKGSLIKP-L 214

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
             +++S   K     ++    GY I +V   +          K  I  ++ + K  + +K
Sbjct: 215 DIAVWSTKPK--TYKLVETKGGYYIIYVKKEEIEKCD-----KNRIREELYVKKFQKALK 267

Query: 386 EDYKRLEEFLA 396
           +    L+   +
Sbjct: 268 DYIDSLKSKAS 278


>gi|322514871|ref|ZP_08067889.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC
           25976]
 gi|322119175|gb|EFX91320.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC
           25976]
          Length = 314

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 88/269 (32%), Gaps = 25/269 (9%)

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMF-VGGMRPSNLLLDQAKRFYFENRSVDY-IV 196
            RL  +     ++     + +    +       G++ +   +DQA         + Y  +
Sbjct: 45  QRLLGKNATAAQHKSAVEQAIDDVLIQKAVKEAGVKVNYAHVDQAIEQIAARNGITYGQL 104

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
           L+      I       L Q+ ++        + + IS       + +     + + L  +
Sbjct: 105 LDALDYQGI------TLNQYRQQIAQQMAMEQVRNISIGKSIQVQPQDVQARAQELLAQD 158

Query: 257 YEKNKEKYFSPEIRTVEQLVFPN-------QKEAD--EAFQSLKKGKK-FIQLAE----E 302
               K K  +     +  ++          Q +A   +    +  GK  F Q A+    +
Sbjct: 159 KAIGKLKTVTGNQYRISHILLKTTPVLNDVQAKAKLTQITADINAGKTTFEQAAKLNSVD 218

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
              +     LG    + I D + A +  S+AK+   T      FG+ I  V+  +     
Sbjct: 219 YVSAADGGDLGYNFLD-IYDPAFAKAA-SMAKQDQITAPFKSQFGWHILKVTGSQQG-DR 275

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +     +    Q+   +A E  ++  K L
Sbjct: 276 TEDAYHQRAYEQLVDKQAQEASRDWVKAL 304


>gi|315931794|gb|EFV10749.1| major antigenic factor PEB4A [Campylobacter jejuni subsp. jejuni
           327]
          Length = 194

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293
            +    I+I   +++A Y++NK+KY  P     + ++   +KEA +    LK        
Sbjct: 104 EKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGSKGKELD 163

Query: 294 KKFIQLAEEQGKSLSDISL 312
            KF +LA+E+       + 
Sbjct: 164 AKFSELAKEKSIDPGSKTK 182


>gi|145636275|ref|ZP_01791944.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittHH]
 gi|145270440|gb|EDK10374.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittHH]
          Length = 290

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 66/194 (34%), Gaps = 34/194 (17%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDEL----QAEYEKNKEKYFSPE----IRTVE 273
           + +R     ++          ++ I+++ +E+    Q   E+ KEK  + +       V 
Sbjct: 91  NTFRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVR 150

Query: 274 QLVFP-----NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322
            ++       N  +A +    +          F   A +  K     + G       P+ 
Sbjct: 151 HILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPET 210

Query: 323 --VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                A ++   +K+G  +      FG+ I  V+ ++            D+  +    KA
Sbjct: 211 YAPQFAQTVVK-SKQGVISAPFKTEFGWHILEVTGVRDG----------DLTAEAYTQKA 259

Query: 381 SEKVKEDYKRLEEF 394
            E++     +L++ 
Sbjct: 260 YERLVN--TQLQDA 271


>gi|332829600|gb|EGK02246.1| hypothetical protein HMPREF9455_01516 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 671

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 7/125 (5%)

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQL----AEEQGKSLSDISLGSFSKEYIPDVSLADS 328
           +Q +    K A   ++++K    +  L    ++      +    G    +    +    +
Sbjct: 251 QQQIDSVGKVAWREYKNIKSPADYQSLCDLFSKVHKMETNGCYFGIIKLDSNLPMDFTMA 310

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKVKED 387
            FSL K GD +  +  ++GY I  +    P  T S   ++  +  + +R  K  E   E 
Sbjct: 311 AFSLEKAGDISKPVMSNYGYHIIRLLRKIP--TESLDVMRNQLRERILRSDKVQELSDEK 368

Query: 388 YKRLE 392
            + L+
Sbjct: 369 RRSLK 373



 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 95/299 (31%), Gaps = 50/299 (16%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------ 280
           SY      +     +  ++ ++  Y++ K      E   +  ++FP              
Sbjct: 91  SYRSQMAQQYMNNTDYEDEYIEKIYKRMK------ENVEINHVMFPFDNKEIVLPADTLR 144

Query: 281 --KEADEAFQS-------------LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
             K+A EA                L+ G  F   AE +   +  +S       ++    +
Sbjct: 145 MYKKAMEARAKILKGGFTGTELSTLRSGAMFYPRAESRNGYIGWVS------PFMFAAKV 198

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKKDIANQMRITKASEKV 384
            D+I+SL    + +  I  + GY I  V N +P+   V  ++V  + ++     +  + V
Sbjct: 199 EDAIYSLPLN-EVSMPIRAARGYHIVQVLNRRPAMGAVEIEQVVFNFSHLPPSQQQIDSV 257

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
            +   R  + +        +      V        + G       +             F
Sbjct: 258 GKVAWREYKNIKSPADYQSLCDLFSKVHKMETNGCYFGIIKLDSNLP-----MDFTMAAF 312

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD-WKTVKTAEEVSSK 502
             +        V + +  Y  +++   IP     L+ +   +++   ++ K  E    K
Sbjct: 313 SLEKAGDISKPV-MSNYGYHIIRLLRKIP--TESLDVMRNQLRERILRSDKVQELSDEK 368


>gi|196232956|ref|ZP_03131805.1| SurA domain protein [Chthoniobacter flavus Ellin428]
 gi|196222934|gb|EDY17455.1| SurA domain protein [Chthoniobacter flavus Ellin428]
          Length = 229

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 60/210 (28%), Gaps = 43/210 (20%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
            TV +V   ++       ++   L    +     + +E+   +   + +LD ++    L 
Sbjct: 48  DTVATVDGAEIKKDELEKAFANLLAA-RKMSPDAIPAEQ--RLQGYRMVLDEIIIDKILA 104

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           +   D         V  +  R          F  +                         
Sbjct: 105 KKSADTK--VTDEEVNAQWERIK------GNFGSEA------------------------ 132

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
             ++           + +         E   +D        V    + ++A    +++K+
Sbjct: 133 --ELKKQVEAAGETLDKVKKGLHDRLAEEHWID------SQVKDKVNVTDAEAEDFYKKH 184

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISN 250
            + ++ PE  R S+IL  V +  K   +  
Sbjct: 185 PEAFKTPEEVRASHILVKVDKDAKPEVVEE 214



 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 135 DVFVSRLAREGINEKEYIDHYT----KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
             F + LA   ++             +M+    ++   +        + D+     +E  
Sbjct: 65  KAFANLLAARKMSPDAIPAEQRLQGYRMVLDEIIIDKILAKKSADTKVTDEEVNAQWERI 124

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
             ++   +   +    + +   L        D  +   + R++   +   + + K+ +++
Sbjct: 125 KGNFG--SEAELKKQVEAAGETL--------DKVKKGLHDRLAEEHWIDSQVKDKVNVTD 174

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD-EAFQSLKKG 293
            E +  Y+K+ E + +PE      ++    K+A  E  +  KKG
Sbjct: 175 AEAEDFYKKHPEAFKTPEEVRASHILVKVDKDAKPEVVEEKKKG 218


>gi|87310508|ref|ZP_01092637.1| probable peptidyl-prolyl cis-trans isomerase [Blastopirellula
           marina DSM 3645]
 gi|87286729|gb|EAQ78634.1| probable peptidyl-prolyl cis-trans isomerase [Blastopirellula
           marina DSM 3645]
          Length = 620

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 65/192 (33%), Gaps = 20/192 (10%)

Query: 217 FEKYKDNYRAPEYKRISYILFDV--------HEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +E + +     +   +   + D              K+ +S +++Q  +E N       E
Sbjct: 408 YEAWLEEVTQEQSVTVEVYVRDAVWPTVALKKLVSDKVIVSEEDIQKGFEANYG-----E 462

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKK---FIQLAEEQGKSLSDISLGSFS---KEYIPD 322
              V  +V  NQ+ A E +   +K      F +LA +        +        +     
Sbjct: 463 RVQVLAIVLDNQRRAQEVWDMARKNPSEQFFGELARQYSIEPVSKNNDGQVPPIRRNGGQ 522

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             L +  F L + G+ + +++     +I               +V+ ++   +   K   
Sbjct: 523 PKLEEEAFRL-QPGELSSIVNIGRQSLILKAMGRTKPTITDVNDVRDELVKDIHEKKIRL 581

Query: 383 KVKEDYKRLEEF 394
           ++ + +  L+E 
Sbjct: 582 EMAKQFDALKEE 593



 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 69/198 (34%), Gaps = 16/198 (8%)

Query: 226 APEYKRISYILFDVHEK---EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
           +P   R   +   +  +     ++E++ +E    ++                +   ++  
Sbjct: 143 SPAQYRSDIVWPTMALRRLAADRLEVTQEEFSKAWQTEFGP-----KVKCRMISVSDRAL 197

Query: 283 ADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKE---YIPDVSLADSIFSLAKKGDF 338
           A+E           F  +A++  +  +  +           +    +   +F+L K G+ 
Sbjct: 198 AEELRAKAAADPDVFADMAKDFSEDPNSAAARGLIPPIRMNMGTPEVESLVFAL-KDGEV 256

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQ---EVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           + V+  +  Y+I    +  P   V      E++  +   +R  K      + Y+ L+E  
Sbjct: 257 SQVLFIAGQYLIFKCESHLPPTEVDPMKQPEIQNRMVEAIREQKLRSSAGDVYEELQEKA 316

Query: 396 ALGTSMDEISRREKIVSI 413
            +     + ++R++   +
Sbjct: 317 QVEKIWSDPAKRQQNPGV 334


>gi|241759320|ref|ZP_04757426.1| conserved hypothetical protein [Neisseria flavescens SK114]
 gi|241320456|gb|EER56753.1| conserved hypothetical protein [Neisseria flavescens SK114]
          Length = 254

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 77/204 (37%), Gaps = 21/204 (10%)

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
            R     +L N  + A  D  +A +   F+  +  +         Y        E++  +
Sbjct: 65  TRLQTLEILKNEAIKAGLD-KDAEVQNQFKNVEAEF---------YANQYAAYLERQTAV 114

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
            + EL+  Y++         I  ++Q+ F + +E   A + L KG  F +L +       
Sbjct: 115 DDAELRRFYDQQTR------IIKLQQVSFASAEEVRAAQELLLKGLSFEELMKRYPNPEQ 168

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGYVIAHVSNI-KPSFTVSFQE 366
           +       ++  P ++   + F+   +GD T   I     + +  +S + +      F+ 
Sbjct: 169 EFDGFISPQQLSPQLA---TAFADMNRGDVTHEPIQMGNRFYLFKLSAVERNPNAEPFEL 225

Query: 367 VKKDIANQMRITKASEKVKEDYKR 390
           V+  IA  ++  K   +++   K 
Sbjct: 226 VRNQIAQAVKRQKVENQIERILKE 249


>gi|304386527|ref|ZP_07368815.1| conserved hypothetical protein [Neisseria meningitidis ATCC 13091]
 gi|304339356|gb|EFM05428.1| conserved hypothetical protein [Neisseria meningitidis ATCC 13091]
          Length = 252

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 81/235 (34%), Gaps = 21/235 (8%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
                 ++         S     QA R     R     VL NR +    D  +  +   F
Sbjct: 32  DTLVAQIMQQADRHAEQSQKPDGQAIRNDAVRRLQTLEVLKNRALKEGLD-KDKDVQNRF 90

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
           +  + ++ A EY R           E+   +S   L+  YE+            ++Q+ F
Sbjct: 91  KIAEASFYAEEYVRF---------LERSETVSESALRQFYERQIRMI------KLQQVGF 135

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
             + EA +A Q L KG  F  L +    +           + +P+   +   F+   +GD
Sbjct: 136 ATEDEARQAQQLLLKGLSFEGLMKRYPNNEQAFD-DFIMAQQLPEPLSSQ--FAAMNRGD 192

Query: 338 FT-PVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            T   +     Y +  +S + K      F+ V+  +   +R  KA  K+    + 
Sbjct: 193 VTRDPVKLGERYYLFKLSEVGKNPDAQPFELVRNQLEQGLRQEKARLKIDAILEE 247


>gi|262341372|ref|YP_003284227.1| peptidylprolyl isomerase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272709|gb|ACY40617.1| peptidylprolyl isomerase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 410

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 99/330 (30%), Gaps = 58/330 (17%)

Query: 192 VDYIVLNNRHVPAIADPSNAVL----TQWFEKYKDNYRAPEYKRIS-------------- 233
           ++ ++L +         SN  L      +  +    Y   E   I               
Sbjct: 63  IEKLMLYHAKKDVSIQISNQELELKTQAFLSEMSKKYANQEEFLIQQFKKKEWIPKLTET 122

Query: 234 -----YILFDVHEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLV----------F 277
                YI     +    +EIS  E++  + KNK K  F P+   +  LV           
Sbjct: 123 IKNHLYIEKFYQKITDNVEISPKEVKYFFTKNKSKIPFLPKKMCISYLVCIPKLSQMNRM 182

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE---YIPDVSLADSIFSLAK 334
                  +  + +     F   A    +     S G   +              + SL++
Sbjct: 183 KIIDFLKKIKKEIHSDIDFSIQAILFSEDNYSASNGGLIQGIKINRLSKEFKHVVLSLSE 242

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK----ASEKVKEDYKR 390
           K + +       G+ I  +   K        EV  D+ + +   K       K K     
Sbjct: 243 K-EISEPFETDSGFHIIKLEKNK-------DEV--DLRHILIKPKYTKHELRKTKSFVDS 292

Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
           +++ +      + I +  +IV+  +    +  ++   + +       +       K    
Sbjct: 293 IQKRIFNRNLENLIDKNNQIVNYSIWNKIWVEENQLSQNMKKALNSLE-------KGGIS 345

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLE 480
           +    +     ++  VQ+ +SIP+R    E
Sbjct: 346 NPYKEIVNEKEAFFIVQLLDSIPSRPISFE 375


>gi|110590724|pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
          Length = 161

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 44  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 103

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 104 LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 157


>gi|194766868|ref|XP_001965546.1| GF22548 [Drosophila ananassae]
 gi|190619537|gb|EDV35061.1| GF22548 [Drosophila ananassae]
          Length = 173

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQ----SLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA    +     + +G+  F +LA        +     LG+F +  +       
Sbjct: 88  ITRTKEEAQLLLEVYRNKIVQGEATFDELARSYSDCSSAKRGGDLGTFGRGQM-QPPFEK 146

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F L   G  + ++    G  I 
Sbjct: 147 AAFGL-NVGQLSGIVDTDSGLHII 169


>gi|189461626|ref|ZP_03010411.1| hypothetical protein BACCOP_02285 [Bacteroides coprocola DSM 17136]
 gi|189431656|gb|EDV00641.1| hypothetical protein BACCOP_02285 [Bacteroides coprocola DSM 17136]
          Length = 453

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 59/165 (35%), Gaps = 28/165 (16%)

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDEL----QAEYEKNKEKYFSPEIRTVEQLVF--- 277
             P +++  Y      E  K + +  ++     +  Y +  E+        +EQ+     
Sbjct: 83  TLPAFRQ--YCKVMRGELLKNVLLDKEQEERICRDLYRQTVERLSKSGWVKIEQITILLS 140

Query: 278 -----PNQKEA----DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
                 +++ A    D  +  LK G  F   + +          G++          AD 
Sbjct: 141 QHAPKADERAARNRMDSIYAKLKSGADFTSFSCQPEG-------GTWIPVVELLQEFADR 193

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
           + SL+K  +F+       G  I  +++ KP   +S++E +  +  
Sbjct: 194 LASLSKN-EFSEPFFSPLGVHIIRLTDTKP--CISYEEARPYLLA 235


>gi|226327126|ref|ZP_03802644.1| hypothetical protein PROPEN_00991 [Proteus penneri ATCC 35198]
 gi|225204344|gb|EEG86698.1| hypothetical protein PROPEN_00991 [Proteus penneri ATCC 35198]
          Length = 135

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 281 KEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKG 336
            +  +    ++ GK  F   A E  +       G      +PD    +  D++  L K  
Sbjct: 8   AKLQQISADIRSGKITFADAAREYSEDPGSALRGGELGWSMPDVYDPAFRDALMRLNKN- 66

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + +  +  +FG+ +  + + + S   +    K+     +   K +E+V+   + L
Sbjct: 67  ELSQPVRSNFGWHLIELEDTR-SVDKTDAANKEQAYRLLFNRKFNEEVQNWMQEL 120


>gi|288574600|ref|ZP_06392957.1| hypothetical protein Dpep_1874 [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570341|gb|EFC91898.1| hypothetical protein Dpep_1874 [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 247

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 25/131 (19%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGK 305
           ++S + L+  +  N E+Y +PE                     ++  G  +         
Sbjct: 122 DLSEEALRKYHSSNGERYRAPER----------------VLAEVRHCGGSYD-------G 158

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           SL       FS + +PD +L D  F   K GD  PV+    G  IA V   + S  + F 
Sbjct: 159 SLDTGEPRWFSLKDVPD-ALKDVFFLDLKLGDVPPVLSSDGGLWIARVLEFQGSRVLPFD 217

Query: 366 EVKKDIANQMR 376
            V+  +   ++
Sbjct: 218 VVRDRVREDLK 228



 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 26/81 (32%)

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
              D       ++      L  VF  D  L     V   DG     ++ E   +R    +
Sbjct: 158 GSLDTGEPRWFSLKDVPDALKDVFFLDLKLGDVPPVLSSDGGLWIARVLEFQGSRVLPFD 217

Query: 481 EVLTDVKKDWKTVKTAEEVSS 501
            V   V++D K     +E+  
Sbjct: 218 VVRDRVREDLKGFYLEKELRR 238


>gi|332253263|ref|XP_003275765.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1-like [Nomascus leucogenys]
          Length = 163

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 273 EQLVFPNQKEADEAF----QSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
           ++ +   ++EA E      Q +K G+  F  LA +      + +   LG+FS+  +    
Sbjct: 75  QEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKP- 133

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIA 351
             D+ F+L + G+ +  +    G  I 
Sbjct: 134 FEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|311248730|ref|XP_003123277.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1-like [Sus scrofa]
          Length = 163

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 273 EQLVFPNQKEADEAF----QSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
           ++ +   ++EA E      Q +K G+  F  LA +      + +   LG+FS+  +    
Sbjct: 75  QEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCNSAKARGDLGAFSRGQMQKP- 133

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIA 351
             D+ F+L + G+ +  +    G  I 
Sbjct: 134 FEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|194213203|ref|XP_001493704.2| PREDICTED: similar to protein (peptidyl-prolyl cis/trans isomerase)
           NIMA-interacting 1 [Equus caballus]
          Length = 236

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 273 EQLVFPNQKEADEAF----QSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
           ++ +   ++EA E      Q +K G+  F  LA +      + +   LG+FS+  +    
Sbjct: 148 QEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKP- 206

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIA 351
             D+ F+L + G+ +  +    G  I 
Sbjct: 207 FEDASFAL-RTGEMSGPVFTDSGIHII 232


>gi|195400745|ref|XP_002058976.1| GJ15247 [Drosophila virilis]
 gi|194141628|gb|EDW58045.1| GJ15247 [Drosophila virilis]
          Length = 165

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQS-----LKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA    +      +     F +LA        +     LG F +  +       
Sbjct: 80  ITRTKEEAQMLLEIYRNKIVNSEATFEELARSYSDCSSAKRGGDLGKFGRGQM-QAPFEK 138

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L K G  + ++    G  I 
Sbjct: 139 AAFAL-KVGQLSDIVDTDSGLHII 161


>gi|162449311|ref|YP_001611678.1| peptidyl-prolyl cis-trans isomerase SurA [Sorangium cellulosum 'So
           ce 56']
 gi|161159893|emb|CAN91198.1| peptidyl-prolyl cis-trans isomerase SurA [Sorangium cellulosum 'So
           ce 56']
          Length = 338

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 4/128 (3%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
               V  VG + +  S      +  L  I  ++        A S      +L  +V    
Sbjct: 28  SERIVAVVGDRAILLSDLRQRARPFLLQIQARVPPGAQQAAAESQVFRD-LLQKMVDEEL 86

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
             Q  E   +      +             +     ++F +  A  G+ E+EY D   + 
Sbjct: 87  EGQAAEKANVRVTSEEIENAFRNIAA---AEQMTVEELFRTARASSGLTEQEYRDEIRRQ 143

Query: 159 LSRTDVVG 166
           +    ++ 
Sbjct: 144 ILEGKMLQ 151


>gi|77736211|ref|NP_001029804.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Bos taurus]
 gi|75060706|sp|Q5BIN5|PIN1_BOVIN RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1; AltName: Full=Peptidyl-prolyl cis-trans isomerase
           Pin1; Short=PPIase Pin1; AltName: Full=Rotamase Pin1
 gi|60650278|gb|AAX31371.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
           [Bos taurus]
 gi|86827588|gb|AAI12584.1| Peptidylprolyl cis/trans isomerase, NIMA-interacting 1 [Bos taurus]
 gi|296485898|gb|DAA28013.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Bos taurus]
          Length = 163

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 273 EQLVFPNQKEADEAF----QSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
           ++ +   ++EA E      Q +K G+  F  LA +      + +   LG+FS+  +    
Sbjct: 75  QEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKP- 133

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIA 351
             D+ F+L + G+ +  +    G  I 
Sbjct: 134 FEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|309750126|gb|ADO80110.1| Putative survival protein SurA-like protein [Haemophilus influenzae
           R2866]
          Length = 313

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 64/194 (32%), Gaps = 34/194 (17%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDE--------LQAEYEKNKEKYFSPEIRTVE 273
           + +R     ++          ++ I+++ +E        L+   EK   +  + +   V 
Sbjct: 114 NAFRQQIANQMMMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVTGKEYEVR 173

Query: 274 QLVFP-----NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322
            ++       N  +A +    +          F   A +  K     + G       P+ 
Sbjct: 174 HILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPET 233

Query: 323 --VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                A ++   +K+G  +      FG+ I  V+  +            D+ ++    KA
Sbjct: 234 YAPQFAQTVVK-SKQGVISAPFKTEFGWHILEVTGTRDG----------DLTSEAYTQKA 282

Query: 381 SEKVKEDYKRLEEF 394
            E++     +L++ 
Sbjct: 283 YERLVN--TQLQDA 294


>gi|302671608|ref|YP_003831568.1| peptidyl-prolyl cis-trans isomerase PpiC-type [Butyrivibrio
           proteoclasticus B316]
 gi|302396081|gb|ADL34986.1| peptidyl-prolyl cis-trans isomerase PpiC-type [Butyrivibrio
           proteoclasticus B316]
          Length = 356

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 83/251 (33%), Gaps = 16/251 (6%)

Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
           G   ++  +     +++   + +  G M    +L D       E  +  Y  L    + A
Sbjct: 88  GTVAQQLKESILAKVAQIKAMNLLAGEMGI--VLDDNELSMAREAAATYYESLTPEEIEA 145

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
           +   +   + + + +Y    +  +Y           ++ + I +    L+  Y+ N    
Sbjct: 146 MKGITQEDVFRIYSEYALADKLYDYIIRDINPEISDDEARTITVEQIFLKT-YDLNASGE 204

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
             P   T +  V+    +A         G  F +L  E  ++       SF K  + + +
Sbjct: 205 KVPFNDTAKNTVYL---KAKSIRNQFLDGASFEELMSEYNEAEESTI--SFGKGEM-EEA 258

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
                F+L    + + V+  + GYVI             + +V+      +   +  E  
Sbjct: 259 YETVAFNLGTD-EVSDVVEVNDGYVIIKCVTTFNREETEYNKVR------IVAERKREVF 311

Query: 385 KEDYKRLEEFL 395
            E Y    + L
Sbjct: 312 GEQYDAYVDTL 322


>gi|302391506|ref|YP_003827326.1| hypothetical protein Acear_0721 [Acetohalobium arabaticum DSM 5501]
 gi|302203583|gb|ADL12261.1| TPR repeat-containing protein [Acetohalobium arabaticum DSM 5501]
          Length = 404

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 66/210 (31%), Gaps = 37/210 (17%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDA---LFSVSGSS-------------TVVS 45
            + +R  SR     I + ++ + F+  G+       F+ S S+              +  
Sbjct: 3   FDNLRNNSR-----ILIYIVIIAFVGGGVLVGLSGYFNGSNSNAQSQNQTAHAQQQNIAV 57

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V  + + +  F    +       Q+    + + +   + L  ++L  ++    L Q  ++
Sbjct: 58  VNDKPIRYQDFQRGLQ----RFQQQSQRPIGNSQV--LALKNRVLQQMIDQELLLQKAKE 111

Query: 106 IGLEA--DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
             +        V  ++        K+   S     + L+  G +  +      + + +  
Sbjct: 112 ENITVNISDQEVETQLDNW----IKNTGRSRKEIENLLSDRGSSIAQVKKQLKEGMHKQK 167

Query: 164 VV----GMFVGGMRPSNLLLDQAKRFYFEN 189
           ++         G+  +   L  A     E 
Sbjct: 168 LINRMVQQAQDGVEVTEKELKDAYEKSTEK 197


>gi|56118644|ref|NP_001008110.1| peptidylprolyl cis/trans isomerase, NIMA-interacting 1 [Xenopus
           (Silurana) tropicalis]
 gi|51895927|gb|AAH81312.1| peptidylprolyl cis/trans isomerase, NIMA-interacting 1 [Xenopus
           (Silurana) tropicalis]
          Length = 159

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADE----AFQSLKKG-KKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLAD 327
           +   + EA E      Q +K G + F  LA    +   + +   LGSF +  +      D
Sbjct: 74  ITRTKDEALEHINGYIQKIKSGDEDFESLASRFSDCSSAKAGGDLGSFGRGAMQKP-FED 132

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L + G+ +  +    G  I 
Sbjct: 133 ASFAL-RPGEMSGPVFTDSGIHII 155


>gi|241668619|ref|ZP_04756197.1| parvulin-like peptidyl-prolyl isomerase domain-containing protein
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877153|ref|ZP_05249863.1| peptidyl-prolyl cis-trans isomerase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|11228674|gb|AAG33121.1|AF247686_1 putative parvulin [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843174|gb|EET21588.1| peptidyl-prolyl cis-trans isomerase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 92

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLAD 327
              L+  ++ E  +  + + +GK  F + A++     S      LG+FS+  +       
Sbjct: 5   ARHLLVQSESECQQIKKDISEGKITFEEAAKKHSLCPSGARGGDLGTFSQGQMV-PEFDK 63

Query: 328 SIFS--LAKKGDFTPVIHGSFGYVIAHVSNI 356
            +F+  L K       +   FGY +  +++ 
Sbjct: 64  VVFNDELHK---VHGPVQTQFGYHLLEITSR 91


>gi|157151667|ref|YP_001450850.1| foldase protein PrsA [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|189037918|sp|A8AYJ0|PRSA_STRGC RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|157076461|gb|ABV11144.1| proteinase maturation protein, putative [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 309

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 77/236 (32%), Gaps = 22/236 (9%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++ M    +  S            +   ++  +            ++  + + +EK    
Sbjct: 31  IITMKGDTITVSEFYDKVKSNPSAQQVLLNLTIKEVFEKQYGKKVTDKEVEEAYEKSSKA 90

Query: 224 YRAPEYKRISYILFDVHEKEKKI-----------EISNDELQAEYEKNKEKYFSPEIRTV 272
           Y     + ++          ++I           + +  EL  E  K   + ++PE+ T 
Sbjct: 91  YGDNFARVLAQAGLTEDAYREQIRTNKLVEYAVKKAAEKELTDENYKAAYEAYTPEV-TA 149

Query: 273 EQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
           + +   ++ +A E   + K  G  F QLA++          G   K      ++ D++  
Sbjct: 150 QIIKVDSEDKAKEVLAAAKAEGADFAQLAKDNSTDGDTKDKGGEIKFDSAATNVPDAVKK 209

Query: 332 LA---KKGDFTPVI-----HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
            A   +    + ++      G   Y I  + +     +  +++ K  +   +   K
Sbjct: 210 AAFGLEANAVSDLVTVRSNQGQASYYIVKLVSKTEKSSK-WEDYKDKLKQVILTAK 264


>gi|148827655|ref|YP_001292408.1| thymidylate kinase [Haemophilus influenzae PittGG]
 gi|148718897|gb|ABR00025.1| thymidylate kinase [Haemophilus influenzae PittGG]
          Length = 311

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/358 (10%), Positives = 100/358 (27%), Gaps = 95/358 (26%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V +V    +  S            +   +G   +          +  +D ++    +
Sbjct: 27  ERVVATVDGIPILES-----------QVRANMGKKGD---------RQSAIDKIIDDILV 66

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            + +++ G++ D   +   I          N  ++  F+  L  +GI+   +     + +
Sbjct: 67  QKAVQESGVKIDPREI-DHIVEDTA---ARNGLTYGQFLDALDYQGISLNTF----RQQI 118

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           +   V+G         ++ + + +                     +      +L +  EK
Sbjct: 119 ANQMVMGAVRNKAIQESIGVTREE---------------------VVALGQKMLEEAKEK 157

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
                   +   + +IL  ++      +                                
Sbjct: 158 GTAQKVMGKEYEVRHILLKLNPLLNDAQ------------------------------AK 187

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKG 336
           ++ A      +     F   A +  K     + G       P+      A  +   +K+G
Sbjct: 188 KQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQIVVK-SKQG 246

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
             +      FG+ I  V+ ++            D+  +    KA E++     +L++ 
Sbjct: 247 VISAPFKTEFGWHILEVTGVRDG----------DLTAEAYTQKAYERLVN--TQLQDA 292


>gi|256599538|pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 46  KNGQGEPARVRCSHLLVAHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 105

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 106 LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|15616760|ref|NP_239972.1| survival protein SurA precursor [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11387168|sp|P57240|SURA_BUCAI RecName: Full=Chaperone surA homolog; Flags: Precursor
 gi|25403557|pir||B84946 peptidylprolyl isomerase (EC 5.2.1.8) surA [imported] - Buchnera
           sp. (strain APS)
 gi|10038823|dbj|BAB12858.1| survival protein surA precursor [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 430

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 103/334 (30%), Gaps = 63/334 (18%)

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
            +S  L +K+L+ L+  + + Q      +     ++   I    L        S D F  
Sbjct: 60  LKSDFLKEKVLEKLIVDSLILQEANSKNINITKEQIDTVIKNIAL----KKHISVDHFKK 115

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-----MRPSNLLLDQA-KRFYFENRSVD 193
           ++    I    Y D++ K +     +           +  S   ++   K+   +N    
Sbjct: 116 QILLRNIKNPSYYDNFIKKIEILLKMKTIQDYELHKRINISEQEVNTIFKKLIKDNEKFK 175

Query: 194 YIVLNNRHVPAIADPSNAV--------------LTQWFE---------KYKDNYRAPEYK 230
            I L+   +P++   S+                L + ++         K K  +   +  
Sbjct: 176 KINLSYILLPSLKQDSDNAVRNRTKIAENIVYKLKKGYDFEKLLIECEKNKSTFIVKKMF 235

Query: 231 -----RISYILFDVHEKEKKIEI-------SNDELQAEYEKNKEK-------YFSPEIRT 271
                 I    F      KK +I           +    + + +K       Y    +  
Sbjct: 236 WKPLLDIQNSFFKTLNIFKKGQILGPIVGDKGLYILKVNDIHHKKENIVTEFYMQHCLIK 295

Query: 272 VEQLVFPNQKEAD--EAFQSLKKGK-KFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
              ++   + +      ++++KKG   F    +              LG  SKE +    
Sbjct: 296 PSVILTNTEAKKKIFNIYENIKKGIYTFDDAVKNLSDDYYSSNKKGDLGWISKESLG--- 352

Query: 325 LA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
              +  F +  K + +  +  ++G+ I  + + +
Sbjct: 353 FDLNKKFLILDKNEISEPVKSNWGWHIFKILDRR 386



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 29/214 (13%)

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
            +++    N+       +       +E  K+I IS  E+   ++K  +     +   +  
Sbjct: 126 SYYD----NFIKKIEILLKMKTIQDYELHKRINISEQEVNTIFKKLIKDNEKFKKINLSY 181

Query: 275 LVFPNQKE------------ADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEY 319
           ++ P+ K+            A+     LKKG  F +L    E+   +     +       
Sbjct: 182 ILLPSLKQDSDNAVRNRTKIAENIVYKLKKGYDFEKLLIECEKNKSTFIVKKMFWKPLLD 241

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI---KPSFTVSFQEVKKDIANQ-- 374
           I +        ++ KKG     I G  G  I  V++I   K +    F      I     
Sbjct: 242 IQNSFF--KTLNIFKKGQILGPIVGDKGLYILKVNDIHHKKENIVTEFYMQHCLIKPSVI 299

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
           +  T+A +K+   Y+ +++ +    + D+  +  
Sbjct: 300 LTNTEAKKKIFNIYENIKKGIY---TFDDAVKNL 330


>gi|311086454|gb|ADP66535.1| survival protein SurA precursor [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 399

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 100/334 (29%), Gaps = 63/334 (18%)

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD-NKFSHDVFV 138
            +S  L +K+L+ L+  + + Q      +     ++   I    L      N F      
Sbjct: 29  LKSDFLKEKVLEKLIVDSLILQEANSKNINITKEQIDTVIKNIALKKHISVNHFK----K 84

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGM----FVGGMRPSNLLLDQA-KRFYFENRSVD 193
             L R   N   Y +   K+     +  +        +  S   ++   K+   +N    
Sbjct: 85  QILLRNIKNPSYYDNFIKKIEILLKMKTIQDYELHKRINISEQEVNTIFKKLIKDNEKFK 144

Query: 194 YIVLNNRHVPAIADPSNAV--------------LTQWFE---------KYKDNYRAPEYK 230
            I L+   +P+    S+                L + ++         K K  +   +  
Sbjct: 145 KINLSYILLPSFKQDSDNAVRNRIKIAENIVYKLKKGYDFEKLLIECEKNKSTFIVKKMF 204

Query: 231 -----RISYILFDVHEKEKKIEI-------SNDELQAEYEKNKEK-------YFSPEIRT 271
                 I    F      KK +I           +    + + +K       Y    +  
Sbjct: 205 WKPLLDIQNSFFKTLNIFKKGQILGPIVGDKGLYILKVNDIHHKKENIVTEFYMQHCLIK 264

Query: 272 VEQLVFPNQKEAD--EAFQSLKKGK-KFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
              ++   + +      ++++KKG   F    +              LG  SKE +    
Sbjct: 265 PSVILTNTEAKKKIFNIYENIKKGIYTFDDAVKNLSDDYYSSNKKGDLGWISKESLG--- 321

Query: 325 LA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
              +  F +  K + +  +  ++G+ I  + + +
Sbjct: 322 FDLNKKFLILDKNEISEPVKSNWGWHIFKILDRR 355



 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 29/214 (13%)

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
            +++    N+       +       +E  K+I IS  E+   ++K  +     +   +  
Sbjct: 95  SYYD----NFIKKIEILLKMKTIQDYELHKRINISEQEVNTIFKKLIKDNEKFKKINLSY 150

Query: 275 LVFPNQKE------------ADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEY 319
           ++ P+ K+            A+     LKKG  F +L    E+   +     +       
Sbjct: 151 ILLPSFKQDSDNAVRNRIKIAENIVYKLKKGYDFEKLLIECEKNKSTFIVKKMFWKPLLD 210

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI---KPSFTVSFQEVKKDIANQ-- 374
           I +        ++ KKG     I G  G  I  V++I   K +    F      I     
Sbjct: 211 IQNSFF--KTLNIFKKGQILGPIVGDKGLYILKVNDIHHKKENIVTEFYMQHCLIKPSVI 268

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
           +  T+A +K+   Y+ +++ +    + D+  +  
Sbjct: 269 LTNTEAKKKIFNIYENIKKGIY---TFDDAVKNL 299


>gi|152991687|ref|YP_001357408.1| hypothetical protein SUN_0091 [Sulfurovum sp. NBC37-1]
 gi|151423548|dbj|BAF71051.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 273

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 110/353 (31%), Gaps = 112/353 (31%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           ++  ++V  + +           E+  + +K G              ++ +D L+     
Sbjct: 22  NAVALTVDGEAITT--------NEIKKVQRKTGMS-----------KQQAIDLLIQDRLQ 62

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            + ++   ++     +  +IA+        N  S       L ++G +  +Y +   + L
Sbjct: 63  KEAMKS--IKISEETIDAKIAQIANL----NNISIPKMQKMLKKQGTSWSKYRESIRQAL 116

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            +                      RF+ E  S             I  PS   L  ++E 
Sbjct: 117 KKE---------------------RFFKEKIS-----------RNITPPSEDQLKLYYET 144

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           +K+ +  P   R++                      EY    EK     +RT        
Sbjct: 145 HKEAFAMPTSIRMT----------------------EYSAKSEKVLQNFLRT-------- 174

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                                   G +    S+ +  K    + ++   + S    G FT
Sbjct: 175 ------------------------GSAKGIKSISATKKTKGMNPAMLSMLLS-TPDGRFT 209

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             I+    +V+  V+  +    + F+E +  +A + R  + ++ +K+ + +++
Sbjct: 210 KPINAGDKWVVFKVNGKQGRKLLPFEEARNAVAGRWRQEQQNQALKDYFSKMK 262



 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 58/177 (32%), Gaps = 18/177 (10%)

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITK-------------ASEKVKEDYKRLEEFLA 396
           I  +  +      S+ + ++ I   ++  +             + +++K  Y+  +E  A
Sbjct: 91  IPKMQKMLKKQGTSWSKYRESIRQALKKERFFKEKISRNITPPSEDQLKLYYETHKEAFA 150

Query: 397 LGTSM---DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
           + TS+   +  ++ EK++   L      G                +L  +    D     
Sbjct: 151 MPTSIRMTEYSAKSEKVLQNFLRTGSAKGIKSISATKKTKGMNPAMLSMLLSTPDGR-FT 209

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
             +   D  ++  ++      +    EE    V   W+  +  + +    +++  E 
Sbjct: 210 KPINAGD-KWVVFKVNGKQGRKLLPFEEARNAVAGRWRQEQQNQALKDYFSKMKTEA 265


>gi|145638627|ref|ZP_01794236.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittII]
 gi|145272222|gb|EDK12130.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittII]
          Length = 311

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 64/194 (32%), Gaps = 34/194 (17%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDE--------LQAEYEKNKEKYFSPEIRTVE 273
           + +R     ++          ++ I+++ +E        L+   EK   +  + +   V 
Sbjct: 112 NAFRQQIANQMMMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVTGKEYEVR 171

Query: 274 QLVFP-----NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322
            ++       N  +A +    +          F   A +  K     + G       P+ 
Sbjct: 172 HILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPET 231

Query: 323 --VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
                A ++   +K+G  +      FG+ I  V+  +            D+ ++    KA
Sbjct: 232 YAPQFAQTVVK-SKQGVISAPFKTEFGWHILEVTGTRDG----------DLTSEAYTQKA 280

Query: 381 SEKVKEDYKRLEEF 394
            E++     +L++ 
Sbjct: 281 YERLVN--TQLQDA 292


>gi|83649456|ref|YP_437891.1| hypothetical protein HCH_06846 [Hahella chejuensis KCTC 2396]
 gi|83637499|gb|ABC33466.1| conserved hypothetical protein [Hahella chejuensis KCTC 2396]
          Length = 415

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           +      + ++S  ++ + Y++++E +           ++ ++  A  A Q L +G  + 
Sbjct: 249 NPGLIRFREQVSAVQINSYYQRHQEDFRFLAKVKPRGAIYGDEAAARLARQQLMQGASWA 308

Query: 298 QLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG-YVIAHVS 354
            L +   + +S      G   KE +       S+      G+ + VI    G +VI  VS
Sbjct: 309 DL-KTPSRPVSWPLDGEGWLRKEAVKPTDWLASLAFATPPGEVSEVIRSPTGDWVILQVS 367

Query: 355 NIKPSFTVSFQE-VKKDIANQMRITKASEKVKEDYKRL 391
             +  +     E V+    + + I  A     E   +L
Sbjct: 368 QREYGYYPPDSETVRYLATDVIAIQLAVTAYSELINQL 405


>gi|256599539|pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 46  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 105

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 106 LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|257870832|ref|ZP_05650485.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           gallinarum EG2]
 gi|257804996|gb|EEV33818.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           gallinarum EG2]
          Length = 342

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 93/305 (30%), Gaps = 40/305 (13%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
           S  ++  M  G +   +           ++     IVL         D +  ++ + +++
Sbjct: 25  SSNEIATMKGGKITVEDFYEQAKTDQNNQSLIRQLIVLKVFDQKYGDDVTEKMIDKQYDQ 84

Query: 220 YKDNY----------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
               Y                +    ++I   L      +  ++I +DEL+A ++     
Sbjct: 85  TAKQYGDSDKFESALEASGLTKKSYREQIRQQLALQEGLKANMDIGDDELKAAWDSFHP- 143

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSK----E 318
                    + +   ++ +A +  +  +K G  F +LA+E+    +    G   K     
Sbjct: 144 -----EVEAQLIKLTSEDDAKDVLKEAQKDGADFSKLAKEKSTDTATAEDGGTVKFDSTS 198

Query: 319 YIPDVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                 +  + F+L K G+ + V         +  Y I  +   +        + K  I 
Sbjct: 199 TTVPAEVQTAAFAL-KDGEISEVISATDASTYTTSYYIVKMVKNQDKGN-DMDKYKDQIT 256

Query: 373 NQMRITKASEKVKEDYKRLEEFLALG-----TSMDEISRREKIVSIDLPLVDFAGKDVKG 427
              + T  ++         +E  A         + +I       +      D +  D   
Sbjct: 257 EIAQNTLLNDSTFVAKTIGKELKAANVKMKDEDLADILSDYVSAAETKDSTDSSATDASD 316

Query: 428 KEVAA 432
            +  A
Sbjct: 317 NKENA 321



 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 49/171 (28%), Gaps = 31/171 (18%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           S S S+ + ++   K+    F                     E+A++   ++ ++  L+ 
Sbjct: 22  SGSSSNEIATMKGGKITVEDFY--------------------EQAKTDQNNQSLIRQLIV 61

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
               DQ     G +     +  +                D F S L   G+ +K Y +  
Sbjct: 62  LKVFDQ---KYGDDVTEKMIDKQ-----YDQTAKQYGDSDKFESALEASGLTKKSYREQI 113

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
            + L+   +       M   +  L  A   +        I L +       
Sbjct: 114 RQQLA---LQEGLKANMDIGDDELKAAWDSFHPEVEAQLIKLTSEDDAKDV 161


>gi|152955225|emb|CAM59673.1| parvulin-type peptidyl prolyl cis/trans isomerase [Lotus japonicus]
          Length = 289

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 48/157 (30%), Gaps = 19/157 (12%)

Query: 272 VEQLVFP--NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLA 326
           V+ L+    +QK   +  Q + KG+    LA E            LG   K  +      
Sbjct: 86  VQHLLVKEEDQKLLLDLLQRISKGEDLSDLAVEYSICPSKDEGGMLGWVRKGQMV-PEFE 144

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           ++ F               FG+ +  V            E ++ +   ++  +   K ++
Sbjct: 145 EAAFGAPLNKVVR--CKTQFGWHLLQV----------LSEREESLLQDIQPAELHAKFQD 192

Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
                E  L      +E+  +  +    +  +   G 
Sbjct: 193 PNFSEEAQLIDVREPEEV-DKASLPGFTVLPLRQFGT 228


>gi|329576836|gb|EGG58321.1| PPIC-type PPIASE domain protein [Enterococcus faecalis TX1467]
          Length = 342

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 72/246 (29%), Gaps = 32/246 (13%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I   ++ +   +  +        V          D+      +            +    
Sbjct: 36  ITVDDFYNQIKEQSTSQQAFSQMVIYKVFEEKYGDKVTDKDIQK-----------NFDEA 84

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV--HEKEKKIEISNDELQAEYEKNKEK 263
            +   A   ++ +  K      +  +             +  ++I++++L+  +      
Sbjct: 85  KEQVEAQGGKFSDALKQAGLTEKTFKKQLKQRAAYDAGLKAHLKITDEDLKTAWASFHP- 143

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EY 319
                    + +   ++ +A    + +  G  F ++A+E+    +    G   K      
Sbjct: 144 -----EVEAQIIQVASEDDAKAVKKEITDGGDFTKIAKEKSTDAATKKDGGKIKFDSHAA 198

Query: 320 IPDVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDI 371
                + ++ F L K G+ +              Y +  ++  K        +++  K I
Sbjct: 199 TVPAEVKEAAFKL-KDGEVSEPIAATNMQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKI 257

Query: 372 ANQMRI 377
           A + ++
Sbjct: 258 AEETKL 263


>gi|56476342|ref|YP_157931.1| putative rotamase (prolyl cis-trans isomerase) [Aromatoleum
           aromaticum EbN1]
 gi|56312385|emb|CAI07030.1| putative Rotamase (prolyl cis-trans isomerase) [Aromatoleum
           aromaticum EbN1]
          Length = 250

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 11/146 (7%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSL 307
           S+  ++  ++ N  K+ S E   V  +V   + +A E    L +    F +LA E   + 
Sbjct: 108 SDQAVEEYFQLNSPKFDSIE---VSHIVLETEGQAKEMMSLLAEDPDSFTELAREHSIAD 164

Query: 308 SDISLGSFSKEY--IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSF--T 361
           +    G   K         +   +F+ A  GD         G  Y I  V+   P+    
Sbjct: 165 TRDDGGFIGKVMRGSLKTEIEAKVFNAA-PGDLLGPFAAPDGAFYEIFLVNAKNPARLDE 223

Query: 362 VSFQEVKKDIANQMRITKASEKVKED 387
            +  EV++ +       +A + V E 
Sbjct: 224 ETAAEVRRLLREGWLAARAQDHVIEM 249


>gi|29375282|ref|NP_814435.1| rotamase family protein [Enterococcus faecalis V583]
 gi|257077560|ref|ZP_05571921.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis JH1]
 gi|257086046|ref|ZP_05580407.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis D6]
 gi|294780469|ref|ZP_06745834.1| putative foldase protein PrsA [Enterococcus faecalis PC1.1]
 gi|46396846|sp|Q837Y9|PRSA_ENTFA RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|29342742|gb|AAO80506.1| rotamase family protein [Enterococcus faecalis V583]
 gi|256985590|gb|EEU72892.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis JH1]
 gi|256994076|gb|EEU81378.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis D6]
 gi|294452468|gb|EFG20905.1| putative foldase protein PrsA [Enterococcus faecalis PC1.1]
 gi|315025711|gb|EFT37643.1| putative foldase protein PrsA [Enterococcus faecalis TX2137]
          Length = 342

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 73/246 (29%), Gaps = 32/246 (13%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I   ++ +   +  +        V          D+      +            +    
Sbjct: 36  ITVDDFYNQIKEQSTSQQAFSQMVIYKVFEEKYGDKVTDKDIQK-----------NFDEA 84

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV--HEKEKKIEISNDELQAEYEKNKEK 263
            +   A   ++ +  K      +  +             +  ++I++++L+  +      
Sbjct: 85  KEQVEAQGGKFSDALKQAGLTEKTFKKQLKQRAAYDAGLKAHLKITDEDLKTAWASFHP- 143

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEY 319
                    + +   ++ +A    + +  G  F ++A+E+    +    G      S+  
Sbjct: 144 -----EVEAQIIQVASEDDAKAVKKEITDGGDFTKIAKEKSTDTATKKDGGKIKFDSQAT 198

Query: 320 IPDVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDI 371
                + ++ F L K G+ +              Y +  ++  K        +++  K I
Sbjct: 199 TVPAEVKEAAFKL-KDGEVSEPIAATNMQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKI 257

Query: 372 ANQMRI 377
           A + ++
Sbjct: 258 AEETKL 263


>gi|325285384|ref|YP_004261174.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga lytica
           DSM 7489]
 gi|324320838|gb|ADY28303.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga lytica
           DSM 7489]
          Length = 475

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 95/289 (32%), Gaps = 42/289 (14%)

Query: 141 LAREGINEKEYID-HYTKMLSRTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
           L  +G++E +         L    +         +  S+  ++       ++       +
Sbjct: 75  LRSQGVSEDDITKCGLLGKLMEDRLYAHQAVQDSLLVSDDEVNATSERQIQSLVGQIGSM 134

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE----L 253
           +              L ++++K        +  +I+ +     + ++KI    +     +
Sbjct: 135 DK-------------LLKYYKKDSQEALREDLFKINKLRMLSEKMQQKIIEEIEITPEEV 181

Query: 254 QAEY-----EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------GKKFIQLA 300
           +  Y     E+        EI  + +    +++E  +    L K        G  F   A
Sbjct: 182 RQFYKKIPKEERPVFGAQLEIAQIVKQPEASEEEKQKVIDKLNKIREDVLVGGSSFKIKA 241

Query: 301 EEQGKSLSDISLGSF---SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +     S G F    KE        D  FSL K+G+ +      FG+ I ++  IK
Sbjct: 242 IISSEDEGSRSNGGFYKIKKETNFVKEFKDVAFSL-KEGEVSEPFETQFGFHIIYLEKIK 300

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEIS 405
                   +V+  +       +  E+ + + +++ + +  G  +  E +
Sbjct: 301 GQER----DVRHILMAPKISDERLEEARLELEKIRQRILDGELTFAEAA 345


>gi|255570207|ref|XP_002526064.1| rotamase, putative [Ricinus communis]
 gi|223534645|gb|EEF36341.1| rotamase, putative [Ricinus communis]
          Length = 294

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 15/127 (11%)

Query: 272 VEQLVFPNQKEAD--EAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLA 326
           V+ L+          E  Q +  G+    LA +            LG   K  +      
Sbjct: 91  VQHLLVKEDDLKLLVELQQRIAGGEDLSDLAVDYSICPSKAEGGMLGWVRKGEMV-PEFE 149

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE-KVK 385
           ++ F+              FG+ +  V + +       + V KDI       K  + K  
Sbjct: 150 EAAFNAPLNKVVK--CKTKFGWHLLQVLSDRE------ESVLKDIQPDEFHVKMQDPKFV 201

Query: 386 EDYKRLE 392
           E+ + ++
Sbjct: 202 EEAQLID 208


>gi|23097999|ref|NP_691465.1| hypothetical protein OB0544 [Oceanobacillus iheyensis HTE831]
 gi|22776223|dbj|BAC12500.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
          Length = 242

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 52/153 (33%), Gaps = 12/153 (7%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           V    +VV V   +V  +++  ++     M+ Q      + E      L  + +D LV  
Sbjct: 57  VDKKESVVVVNGTEVNGTTYNAAYSLVKSMMHQSGQDTSDLE-----ALKDQTVDFLVEQ 111

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             + Q   + G+E     +  E+        +        F + L +  + E+ +     
Sbjct: 112 ELMLQEANNAGIEVTDKELEEELKAYKESANEG------QFTTMLEQLNMTEENFKHQLR 165

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
             L+  + V      +  ++  +++      E 
Sbjct: 166 YDLTTMEYVEQ-EFEVEVTDKEVEELYNQMTEQ 197


>gi|90417475|ref|ZP_01225398.1| hypothetical protein GB2207_07352 [marine gamma proteobacterium
           HTCC2207]
 gi|90330716|gb|EAS45995.1| hypothetical protein GB2207_07352 [marine gamma proteobacterium
           HTCC2207]
          Length = 291

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 55/160 (34%), Gaps = 12/160 (7%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ----KEADEAFQSLKKGKKFIQL 299
           +   I+ D+L+  Y + +E+Y  P   T   +   ++    ++A      L++      +
Sbjct: 120 EAEAITEDDLRDYYTERREEYKKPASATFTHVFVSSERHGAEQAQAIATELQQTLNAEAV 179

Query: 300 AEEQGKSLSD--------ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
             E      +        ++                 +FS      +   +  ++G+ + 
Sbjct: 180 PFENAPRYGERFLYNRNYVNRDDDEIGSHFGDQFEQQLFSFDISEQWQGPVQSTYGWHLV 239

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            +    P++    +E+  ++    +  +  +  ++   +L
Sbjct: 240 LLVKNTPAYIPPLEEIAANVFADAQRQQQRQVKRQAIDKL 279


>gi|75075274|sp|Q4R383|PIN1_MACFA RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1; AltName: Full=Peptidyl-prolyl cis-trans isomerase
           Pin1; Short=PPIase Pin1
 gi|67972184|dbj|BAE02434.1| unnamed protein product [Macaca fascicularis]
          Length = 163

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 46  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 105

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 106 LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|262283150|ref|ZP_06060917.1| foldase prsA [Streptococcus sp. 2_1_36FAA]
 gi|262261402|gb|EEY80101.1| foldase prsA [Streptococcus sp. 2_1_36FAA]
          Length = 309

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 77/236 (32%), Gaps = 22/236 (9%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++ M    +  S            +   ++  +            ++  + + +EK    
Sbjct: 31  IITMKGDTITVSEFYDKVKSNPSAQQVLLNLTIKEVFEKQYGKKVTDKEVEEAYEKSSKA 90

Query: 224 YRAPEYKRISYILFDVHEKEKKI-----------EISNDELQAEYEKNKEKYFSPEIRTV 272
           Y     + ++          ++I           + +  EL  E  K   + ++PE+ T 
Sbjct: 91  YGDNFARVLAQAGLTEDAYREQIRTNKLVEYAVKKAAEKELTDENYKAAYESYTPEV-TA 149

Query: 273 EQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
           + +   ++ +A E   + K  G  F QLA++          G   K      ++ D++  
Sbjct: 150 QIIKVDSEDKAKEVLAAAKAEGADFAQLAKDNSTDGDTKDKGGEIKFDSAATNVPDAVKK 209

Query: 332 LA---KKGDFTPVI-----HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
            A   +    + ++      G   Y I  + +     +  +++ K  +   +   K
Sbjct: 210 AAFGLEANAVSDLVTVRSNQGQASYYIVKLVSKTEKSSK-WEDYKDKLKQVILTAK 264


>gi|257465500|ref|ZP_05629871.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus minor 202]
 gi|257451160|gb|EEV25203.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus minor 202]
          Length = 317

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 48/372 (12%), Positives = 101/372 (27%), Gaps = 76/372 (20%)

Query: 21  LFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           L V F+   GLS +L +      + +V    +  S    +                  ++
Sbjct: 9   LLVAFVATLGLSQSLLAA-EERVIATVDGNMIMESQVTRAL----------------GKK 51

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           A +    K  L+N++    + + I+  G++ D+ RV   I          N  ++   + 
Sbjct: 52  ANTEANRKAALENIIDEMLVQKAIQQSGVKVDYRRVDQAIEEI----AVRNGLTYGQLLD 107

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L  +GI   +Y     + +    V    +G                             
Sbjct: 108 ALDYQGITLNQYRQQIAQQMMMEAVRHQSIG----------------------------- 138

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
                    +   +                 +          K K +  +   +     K
Sbjct: 139 ----KSIQVNPEDVRA-------------QAQALMAKDKAAGKLKSVSGTEPRISHILIK 181

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319
                   + +     +  + K     F+   K      ++   G  L    L  +   +
Sbjct: 182 TTPVLNDAQAKAKLNSIIADIKAGKTTFEEAAKANSVDYVSAADGGDLGFNFLDIYDPAF 241

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
               +        AK+G  T      FG+ I  V++ +     +     +    Q+   +
Sbjct: 242 ANAAAK-------AKQGQITAPFKSQFGWHILKVTDYRQG-DRTEDAYAQKAYEQLANQQ 293

Query: 380 ASEKVKEDYKRL 391
           A    K+  K L
Sbjct: 294 AEAASKDWVKAL 305


>gi|256599529|pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 46  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 105

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 106 LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|120602307|ref|YP_966707.1| hypothetical protein Dvul_1261 [Desulfovibrio vulgaris DP4]
 gi|120562536|gb|ABM28280.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4]
          Length = 328

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 55/156 (35%), Gaps = 4/156 (2%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            +R++   F       ++ IS +E+++ Y  ++ ++          +    ++  + A  
Sbjct: 142 RRRLALTKFAQVVLRSEVAISLEEVESWYRAHQGEFRLAARVRFIMVEGDTREGVEAATG 201

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           ++  G    ++ +       +  L    ++ IP  +      +  K G  +P I     +
Sbjct: 202 AVASGAAPEEVEKAFPGMSGNELL--IRRDRIP--AAWQKALAALKPGGVSPPIAFEGRW 257

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
           V   +    P+  +S  +    I  ++   K     
Sbjct: 258 VAFRLIESLPAQDMSVVDAYPVIERRLLEEKLDAAF 293


>gi|125981737|ref|XP_001354872.1| GA14299 [Drosophila pseudoobscura pseudoobscura]
 gi|195167040|ref|XP_002024342.1| GL14862 [Drosophila persimilis]
 gi|54643184|gb|EAL31928.1| GA14299 [Drosophila pseudoobscura pseudoobscura]
 gi|194107715|gb|EDW29758.1| GL14862 [Drosophila persimilis]
 gi|225581071|gb|ACN94647.1| GA14299 [Drosophila miranda]
          Length = 163

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 10/88 (11%)

Query: 273 EQLVFPNQKEADEAFQ-----SLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
           EQ +   ++EA    +      +++   F +LA        +     LG F +  +    
Sbjct: 75  EQHITRTKEEAQLLLEVYRNKIVQQETTFEELARSYSDCSSAKRGGDLGKFGRGQM-QPP 133

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAH 352
              + F+L   G  + ++    G  I  
Sbjct: 134 FEKAAFAL-NVGQLSGIVDTDSGLHIIQ 160


>gi|291563932|emb|CBL42748.1| PPIC-type PPIASE domain [butyrate-producing bacterium SS3/4]
          Length = 324

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 74/190 (38%), Gaps = 30/190 (15%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI----------------RTV 272
                Y+  ++    +  EI  D +++ YE   +     E                  TV
Sbjct: 115 QAAAQYMK-ELKNAGESSEIDKDVVESLYEDYWKTEKLVETLTGSVNLEVSDSEAKVITV 173

Query: 273 EQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
           +++V  ++ +ADEA + ++ +G  F+ +A+E  +          S+   P+ +   + + 
Sbjct: 174 DEIVLSDKDQADEALKKVQMEGTDFMTVAKEVSEDQEIEKK--ISRGLRPE-AYEKAAYV 230

Query: 332 LAKKGDFTPVIHGSFGYVIAH-VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           LA  G+ + VI     Y I   V++   + T     V+K+   +M   K +E   E Y  
Sbjct: 231 LA-TGEISDVIEADGKYYILRCVNDYDEAATK----VRKE---EMVREKRNEVFYETYSE 282

Query: 391 LEEFLALGTS 400
               + L   
Sbjct: 283 YAAKVHLAKD 292


>gi|327479445|gb|AEA82755.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas
           stutzeri DSM 4166]
          Length = 318

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 17/142 (11%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------------GKKF 296
                Q  Y  N++++FS  +     ++     +  EA    ++             ++F
Sbjct: 143 DEAACQQYYNGNRQRFFSAPLLAARHILLACPADDAEARSLAREQALGLLQQLQAAPQRF 202

Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
            +LA +     S     +LG  SK           +F L   G     +   +GY +  V
Sbjct: 203 AELALQHSACPSKEQGGALGQISKGQTV-PEFERQLFRLP-VGLCQQPLESRYGYHLVFV 260

Query: 354 SNIKPSFTVSFQEVKKDIANQM 375
                   + ++ V   I  ++
Sbjct: 261 DQRIEGEQLPYEIVAGTIRAEL 282


>gi|256599537|pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 46  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 105

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 106 LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|255318653|ref|ZP_05359884.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter radioresistens
           SK82]
 gi|262379122|ref|ZP_06072278.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter radioresistens
           SH164]
 gi|255304335|gb|EET83521.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter radioresistens
           SK82]
 gi|262298579|gb|EEY86492.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter radioresistens
           SH164]
          Length = 94

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
           V  ++   +  A++  + L+ G  F +LA++      +     LG   K  +    +   
Sbjct: 6   VRHILVKEKTLAEQLKKKLQSGADFNKLAQQYSTCNSARRGGELGEVKKGQLV-PVIDKL 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +FS A++      +   FG+ +  + 
Sbjct: 65  VFSGAER-VIHGPVKSQFGFHLLEIK 89


>gi|327353064|gb|EGE81921.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 198

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAF----QSLKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  +++EA E      + ++ G+           +   +     LG F +  +      +
Sbjct: 113 ITRSKEEALEILRGHEERIRAGETTLGDIAMSESDCSSARKKGDLGFFGRGEM-QAEFEE 171

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L K G  + ++  + G  +  
Sbjct: 172 AAFAL-KPGQVSGIVETASGVHLIE 195


>gi|209693973|ref|YP_002261901.1| chaperone SurA precursor [Aliivibrio salmonicida LFI1238]
 gi|208007924|emb|CAQ78055.1| chaperone SurA precursor [Aliivibrio salmonicida LFI1238]
          Length = 436

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 16/163 (9%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-- 279
            ++R    K I+       +  ++I I   E+++      E+  +     +  +      
Sbjct: 128 ADFREQIRKEIAASEARNAQVRRRINILPQEVESLALLLSEETQATVQYKISHIQLRTDG 187

Query: 280 ---------QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
                    +K+A E  + LK+G  F  +A       K+L     G   KE +P    AD
Sbjct: 188 ATQAEKEALEKQALELTERLKQGADFATMAYTYSKGPKALQGGDWGWMRKEEMP-TIFAD 246

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            I    K            G+ I  + ++K   TV+  EV   
Sbjct: 247 QITGQGKSS-IIGPFRSGVGFHIIKIDDVKGLETVAVTEVNAR 288



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 12/158 (7%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  V    V  S    S K  + + +Q+ G  +  E      L +++L+ L+     
Sbjct: 28  DRVIAIVDEGVVLQSDIETSLKT-VKINAQEKGQPLPEENV----LREQVLEKLILDTIQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E +G+  D  R+   +        KDNK +      + A +G+   ++ +   K +
Sbjct: 83  SQQAEKMGIRIDDTRLEEALNNI----AKDNKMTLAQLQQKAASQGLAYADFREQIRKEI 138

Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFE--NRSVDY 194
           + ++         +      ++       E    +V Y
Sbjct: 139 AASEARNAQVRRRINILPQEVESLALLLSEETQATVQY 176



 Score = 38.4 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 40/134 (29%), Gaps = 17/134 (12%)

Query: 272 VEQLVFPN-----QKEADEAFQSLKKG-----KKFIQLAE----EQGKSLSDISLGSFSK 317
              ++         + A+     +        + F  +A+    + G + ++  LG F  
Sbjct: 287 ARHILVKTSVIMSDEGAERLLNQITSDIESGKETFAAMAQRYSQDPGSAAANGELG-FQT 345

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             +        +  L   G  +       G+ IA V   +     +   +K      +  
Sbjct: 346 PDLYVPEFKHQVEILP-VGQISKPFKTVHGWHIAEVLERR-QVDRTDAAMKNKAYRILMN 403

Query: 378 TKASEKVKEDYKRL 391
            K +E+     + +
Sbjct: 404 RKFNEESGAWLQEI 417


>gi|322698790|gb|EFY90557.1| peptidyl-prolyl cis/trans isomerase [Metarhizium acridum CQMa 102]
          Length = 198

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEA----FQSLKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  ++ EA E        +K G            +   +     LG F +  +      D
Sbjct: 110 ITRSKDEAMEIIKAHEAKIKSGAISLGDLAPTESDCSSARKRGDLGYFGRGDM-QKEFED 168

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L K G+ + V+  + G  +  
Sbjct: 169 AAFAL-KPGEMSGVVETASGLHLIE 192


>gi|21911276|ref|NP_665544.1| foldase protein PrsA [Streptococcus pyogenes MGAS315]
 gi|28896648|ref|NP_802998.1| foldase protein PrsA [Streptococcus pyogenes SSI-1]
 gi|46396934|sp|Q8K5P3|PRSA2_STRP3 RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|21905490|gb|AAM80347.1| putative protease maturation protein [Streptococcus pyogenes
           MGAS315]
 gi|28811902|dbj|BAC64831.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 309

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 22/211 (10%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T +V M    +  S+   +       +   +  ++            S+  + + +++ 
Sbjct: 29  NTKLVSMKGDTITVSDFYNETKNTELAQKAMLSLVISRVFETQYANKVSDKEVEKAYKQT 88

Query: 221 KDNY------------RAPEYKRISYILFDVHEKEKKIEISNDEL-QAEYEKNKEKYFSP 267
            D Y              PE  +    L  + E   K +  N+ + + +Y +  + Y   
Sbjct: 89  ADQYGTSFKTVLAQSGLTPETYKKQIRLTKLVEYAVKEQAKNETISKKDYRQAYDAYTP- 147

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
              T E + F  +++A  A +++K  G  F  +A+E+  +    +  +F        +  
Sbjct: 148 -TMTAEIMQFEKEEDAKAALEAVKAEGADFAAIAKEKTIAADKKTTYTFDSGETTLPAEV 206

Query: 327 DSIFSLAKKGDFT------PVIHGSFGYVIA 351
               S  K+G+ +              Y I 
Sbjct: 207 VRAASGLKEGNRSEIITALDPATSKRTYHII 237


>gi|262377504|ref|ZP_06070726.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
 gi|262307560|gb|EEY88701.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
          Length = 94

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328
           V  ++  +++ A++  + +  G  F ++A++      +     LG   K  +    +   
Sbjct: 6   VRHILVKDKETAEQLKKKILSGADFNKIAKQYSTCNSAKRGGELGEVKKGQLV-PVIDKL 64

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVS 354
           +F+ A++      +   FG+ +  + 
Sbjct: 65  VFTAAER-VLHGPVKSQFGFHLVEIK 89


>gi|229548632|ref|ZP_04437357.1| peptidylprolyl isomerase [Enterococcus faecalis ATCC 29200]
 gi|255971145|ref|ZP_05421731.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T1]
 gi|255973769|ref|ZP_05424355.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T2]
 gi|256617573|ref|ZP_05474419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis ATCC 4200]
 gi|256761456|ref|ZP_05502036.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T3]
 gi|256957443|ref|ZP_05561614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis DS5]
 gi|256964476|ref|ZP_05568647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis HIP11704]
 gi|257089114|ref|ZP_05583475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis CH188]
 gi|257415255|ref|ZP_05592249.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis AR01/DG]
 gi|257420948|ref|ZP_05597938.1| rotamase [Enterococcus faecalis X98]
 gi|300861731|ref|ZP_07107811.1| putative foldase protein PrsA [Enterococcus faecalis TUSoD Ef11]
 gi|307269720|ref|ZP_07551050.1| putative foldase protein PrsA [Enterococcus faecalis TX4248]
 gi|307272499|ref|ZP_07553752.1| putative foldase protein PrsA [Enterococcus faecalis TX0855]
 gi|307277028|ref|ZP_07558134.1| putative foldase protein PrsA [Enterococcus faecalis TX2134]
 gi|307284552|ref|ZP_07564714.1| putative foldase protein PrsA [Enterococcus faecalis TX0860]
 gi|312904295|ref|ZP_07763457.1| putative foldase protein PrsA [Enterococcus faecalis TX0635]
 gi|312953070|ref|ZP_07771920.1| putative foldase protein PrsA [Enterococcus faecalis TX0102]
 gi|229306263|gb|EEN72259.1| peptidylprolyl isomerase [Enterococcus faecalis ATCC 29200]
 gi|255962163|gb|EET94639.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T1]
 gi|255966641|gb|EET97263.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T2]
 gi|256597100|gb|EEU16276.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis ATCC 4200]
 gi|256682707|gb|EEU22402.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T3]
 gi|256947939|gb|EEU64571.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis DS5]
 gi|256954972|gb|EEU71604.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis HIP11704]
 gi|256997926|gb|EEU84446.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis CH188]
 gi|257157083|gb|EEU87043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis ARO1/DG]
 gi|257162772|gb|EEU92732.1| rotamase [Enterococcus faecalis X98]
 gi|300848256|gb|EFK76013.1| putative foldase protein PrsA [Enterococcus faecalis TUSoD Ef11]
 gi|306503229|gb|EFM72483.1| putative foldase protein PrsA [Enterococcus faecalis TX0860]
 gi|306506272|gb|EFM75436.1| putative foldase protein PrsA [Enterococcus faecalis TX2134]
 gi|306510784|gb|EFM79801.1| putative foldase protein PrsA [Enterococcus faecalis TX0855]
 gi|306513830|gb|EFM82432.1| putative foldase protein PrsA [Enterococcus faecalis TX4248]
 gi|310628979|gb|EFQ12262.1| putative foldase protein PrsA [Enterococcus faecalis TX0102]
 gi|310632391|gb|EFQ15674.1| putative foldase protein PrsA [Enterococcus faecalis TX0635]
 gi|315031408|gb|EFT43340.1| putative foldase protein PrsA [Enterococcus faecalis TX0017]
 gi|315034487|gb|EFT46419.1| putative foldase protein PrsA [Enterococcus faecalis TX0027]
 gi|315144514|gb|EFT88530.1| putative foldase protein PrsA [Enterococcus faecalis TX2141]
 gi|315146998|gb|EFT91014.1| putative foldase protein PrsA [Enterococcus faecalis TX4244]
 gi|315154018|gb|EFT98034.1| putative foldase protein PrsA [Enterococcus faecalis TX0031]
 gi|315156661|gb|EFU00678.1| putative foldase protein PrsA [Enterococcus faecalis TX0043]
 gi|315159697|gb|EFU03714.1| putative foldase protein PrsA [Enterococcus faecalis TX0312]
 gi|315162001|gb|EFU06018.1| putative foldase protein PrsA [Enterococcus faecalis TX0645]
 gi|315170748|gb|EFU14765.1| putative foldase protein PrsA [Enterococcus faecalis TX1342]
 gi|315578736|gb|EFU90927.1| putative foldase protein PrsA [Enterococcus faecalis TX0630]
 gi|327534276|gb|AEA93110.1| peptidyl-prolyl cis-trans isomerase [Enterococcus faecalis OG1RF]
          Length = 342

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 73/246 (29%), Gaps = 32/246 (13%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I   ++ +   +  +        V          D+      +            +    
Sbjct: 36  ITVDDFYNQIKEQSTSQQAFSQMVIYKVFEEKYGDKVTDKDIQK-----------NFDEA 84

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV--HEKEKKIEISNDELQAEYEKNKEK 263
            +   A   ++ +  K      +  +             +  ++I++++L+  +      
Sbjct: 85  KEQVEAQGGKFSDALKQAGLTEKTFKKQLKQRAAYDAGLKAHLKITDEDLKTAWASFHP- 143

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEY 319
                    + +   ++ +A    + +  G  F ++A+E+    +    G      S+  
Sbjct: 144 -----EVEAQIIQVASEDDAKAVKKEITDGGDFTKIAKEKSTDAATKKDGGKIKFDSQAT 198

Query: 320 IPDVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDI 371
                + ++ F L K G+ +              Y +  ++  K        +++  K I
Sbjct: 199 TVPAEVKEAAFKL-KDGEVSEPIAATNMQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKI 257

Query: 372 ANQMRI 377
           A + ++
Sbjct: 258 AEETKL 263


>gi|261330093|emb|CBH13077.1| PPIase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 115

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 281 KEADEAFQSLKKGK-KFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           KE  +  Q +  G+  F + A ++   G   S   LG FS   +      D++ +L K G
Sbjct: 39  KELQKWSQRIASGEVSFEEAASQRSDCGSYASGGDLGFFSSGEMMKP-FEDAVRAL-KIG 96

Query: 337 DFTPVIHGSFGYVIAH 352
           D +P++    G  I  
Sbjct: 97  DISPIVQTDSGLHIIK 112


>gi|169617421|ref|XP_001802125.1| hypothetical protein SNOG_11889 [Phaeosphaeria nodorum SN15]
 gi|160703405|gb|EAT80933.2| hypothetical protein SNOG_11889 [Phaeosphaeria nodorum SN15]
          Length = 592

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 28/218 (12%)

Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAI 205
           +EY     K  +R +VV +       +  +         +    ++++         P+ 
Sbjct: 394 REYRQDMLKHKTREEVVAIVEQQAERNRSVFRMFDESETQDLVQKALNSATPPPLSYPSA 453

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
              +  VL+        ++  P  K   +      + +                +  K  
Sbjct: 454 TYVTTVVLS------PSHF-VPNSKGAHFPTMAPKKSKDTTA----------GASSSKLK 496

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDV 323
                 V  ++     + ++A + L+ G+KF  +A E  +       SLG   +  +   
Sbjct: 497 PATSINVRHILCEKHSKKEDALRRLRDGEKFDVVASELSEDKRKQAGSLGWKPRNTL-HA 555

Query: 324 SLADSIFSLAKKGDFTPVI----HGSFGYVIAHVSNIK 357
                 + L +    +           GY I  V   K
Sbjct: 556 DFEKVAYEL-EPSTTSNPKIGEVKTEHGYHIIMVEGRK 592


>gi|85702071|ref|NP_001028940.1| peptidylprolyl cis/trans isomerase, NIMA-interacting 1, pseudogene
           1 [Mus musculus]
 gi|74208417|dbj|BAE26396.1| unnamed protein product [Mus musculus]
 gi|148695780|gb|EDL27727.1| mCG20568 [Mus musculus]
 gi|187955818|gb|AAI47364.1| Peptidylprolyl cis/trans isomerase, NIMA-interacting 1-like [Mus
           musculus]
 gi|187956101|gb|AAI47363.1| Peptidylprolyl cis/trans isomerase, NIMA-interacting 1-like [Mus
           musculus]
          Length = 159

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                   +++EA E      + +K G+  F  
Sbjct: 42  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRSKEEALELINGYIRKIKSGEEDFES 101

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  + +    D+ F+L + G+ +  +    G  I 
Sbjct: 102 LASQFSDCSSAKARGDLGAFSRGQM-EKPFEDASFAL-RTGEMSGPVFTESGIHII 155


>gi|322705885|gb|EFY97468.1| peptidyl-prolyl cis/trans isomerase [Metarhizium anisopliae ARSEF
           23]
          Length = 228

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEA----FQSLKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  ++ +A E        +K G            +   +     LG F +  +      D
Sbjct: 143 ITRSKDDAMEIIKAHEAKIKSGAISLGDLAPTESDCSSARKRGDLGYFGRGDM-QKEFED 201

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L K G+ + V+  + G  +  
Sbjct: 202 AAFAL-KPGEMSGVVETASGLHLIE 225


>gi|224532043|ref|ZP_03672675.1| conserved hypothetical protein [Borrelia valaisiana VS116]
 gi|224511508|gb|EEF81914.1| conserved hypothetical protein [Borrelia valaisiana VS116]
          Length = 500

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 86/271 (31%), Gaps = 35/271 (12%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKV------PFSSFINSWK 61
                  L+++   F+I  L   +F  + SS++   G    Q +       F+ ++N + 
Sbjct: 23  GVWGIFTLILIVFGFIIAPLLPGMFDNANSSSL-KFGSYKGQPIYYKKDSKFAKYVNYYS 81

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKI--LDNL--VSGATLDQFIEDIGLEADHGRVWG 117
                +            A+++ +D  +  L  +  V        I+          +  
Sbjct: 82  NLYSRLQGN---------AKNINIDYNVWYLAFMKYVEDIAFFDLIKKYNFYISKEMLNK 132

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            + RSP +   +  FS   +          + +  D   + +  ++V       +   + 
Sbjct: 133 NLLRSPEYLDSNGNFSSKRYN---KASDYQKVKIYDDMVENMLFSNVKIFLNSNLIFPDS 189

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L +  K      R + Y+ L+ +        SN     + EK  + ++      I +   
Sbjct: 190 LFNTIKDMSTVERQISYLSLSYQDF------SNKEAIFYAEKNLNLFKHLSLASIRFKNM 243

Query: 238 DVHEKEKKIEISN---DELQAEYEKNKEKYF 265
           +         ++    +EL   Y  +   + 
Sbjct: 244 NDARNAYDKLVNKTPFEELAKLYSDDIANFK 274


>gi|313158136|gb|EFR57541.1| PPIC-type PPIASE domain protein [Alistipes sp. HGB5]
          Length = 468

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 57/385 (14%), Positives = 117/385 (30%), Gaps = 64/385 (16%)

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA--KRFYFENRSVDYIVLNNRHVPAIADPS 209
           +  + + L+       +     P N  L+    ++  F    +D + +N   + +     
Sbjct: 44  VADHARQLTAQRRAEGYTSDRDPMNEALEALMTQKLLFNQAQIDSVKINAGDIASHV--- 100

Query: 210 NAVLTQWFEK----------------YKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
              +    E                          Y+  SY     +E   K+ +   E+
Sbjct: 101 EEQVQNMIEAEGSIPRLEAKHHMAIFNIRENMRQRYEEQSYASSMQNEVVSKVAVIPGEV 160

Query: 254 QAEYEK-NKEKYFS-PEIRTVEQL------VFPNQKEADEAFQSLKK-----GKKFIQLA 300
           +  Y+  +K+   +  E     Q+      +   ++   E    +++       KF  LA
Sbjct: 161 ERFYKSIDKDSLPTIAEQYVYAQITRFPKSITQAKQRTRERLLDMRERVITGKAKFENLA 220

Query: 301 EEQGKSLSDISLGSF---SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
               +    +  G     +     D S A ++ ++ K G  + V+   FG+ I  + + +
Sbjct: 221 RMYSQDPGTMMRGGEMDPAPLASLDSSFAAALENM-KPGQISEVVESQFGFHIIQMLDKR 279

Query: 358 PS----------FTVSFQEVK------KDIANQMRI-----TKASEKVKEDYKRLEEFLA 396
            S             +  E+         IAN +R       KA+    +D     +   
Sbjct: 280 GSLYHFRHILLRPVYTIDELTEGTHFLDSIANLIRKDSITFEKAALLYSDDATS--KMNG 337

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
              S  +I  R       L +  F  +D               L      +  L++D   
Sbjct: 338 GIVSNHDILERFSAFDAKLTVTKFLREDFAHFNALNDYNALVRLKPGEVSEAFLTED--- 394

Query: 457 ALPDGSYMWVQIKESIPARDRKLEE 481
            + +     V++ E IP     L E
Sbjct: 395 IMGNQLAKVVKLVEIIPTHVASLNE 419


>gi|110591318|pdb|2F21|A Chain A, Human Pin1 Fip Mutant
          Length = 162

 Score = 53.8 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 45  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 104

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 105 LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 158


>gi|256599526|pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 46  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 105

Query: 299 LAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +   + S      LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 106 LASQFSDASSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|197105171|ref|YP_002130548.1| peptidyl-prolyl cis-trans isomerase family protein
           [Phenylobacterium zucineum HLK1]
 gi|196478591|gb|ACG78119.1| peptidyl-prolyl cis-trans isomerase family protein
           [Phenylobacterium zucineum HLK1]
          Length = 468

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/389 (12%), Positives = 103/389 (26%), Gaps = 61/389 (15%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
               S    V  + +         +  +          V           ++ L +LV  
Sbjct: 74  GISESVAAVVNDEIISTYDLAQRMRLLIAT------SGVQPTEQTLPQFQREALVSLVDE 127

Query: 97  ATLDQFIEDI------GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
               Q +  +       + A    V  EIA       + N  + + F+S L   GI    
Sbjct: 128 RLQFQELRRVEREQKIDIVATDEEVDEEIADM----ARQNNMTREQFLSFLGARGIGVDT 183

Query: 151 YIDHYTKMLS-----RTDVVGMF-VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
                   +S     R        +G  + +                +  ++++   V  
Sbjct: 184 LRQQIRAQVSWARWIRGRYGSRLRIGDDQIAATQARLEAAAAKPQYQISEVLIDASRVGG 243

Query: 205 IAD--------PSNAVLTQWFEKYKDNYRA------------------PEYKRISYILFD 238
           +           +       F      + A                  P           
Sbjct: 244 MQQAMQGAQQLVAQMQQGAPFPAVARQFSALPTAAAGGDAGWISQGEMPTEVEQVLEQMR 303

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK------K 292
             +  + I + +  +   Y ++K       +  ++Q   P  + ADEA    K      K
Sbjct: 304 PGQLSQPIPVRDG-VYIVYLRDKRAGGGATLVNLKQAAVPLAQGADEAEARAKLEALRPK 362

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVI 350
                 L E+    +  +  G   +  + D   +   +  +L + G  +  I  + G  +
Sbjct: 363 ITSCETL-EQAAAGVEGVVAGDLGEAEVADLAPAFRQAAETL-QIGQVSEPIRTNAGLHL 420

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITK 379
             V   + +        ++ I N++   +
Sbjct: 421 VAVCGRRAAGEAQVD--REQIENRLYGQQ 447


>gi|254514975|ref|ZP_05127036.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
 gi|219677218|gb|EED33583.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
          Length = 276

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 13/161 (8%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK- 305
            ++  +LQ  Y  N   +  P    +E++V  ++ +A     +L++G     LA E    
Sbjct: 116 NLAEAQLQEFYRDNTALFAEPLRFQLEEIVVEDETQATAIITALREGLSAKALAAENDAV 175

Query: 306 -----SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
                    +SL + S+ +  D+         A KGD         G  I  + +++ + 
Sbjct: 176 SITRLPQVPLSLSALSRRFPQDLVSR---LETAGKGDILT-DKSERGIRIIKILDVREAN 231

Query: 361 TVSFQEVKKDIANQM---RITKASEKVKEDYKRLEEFLALG 398
              F++V+  + N++   R   A E+  E  ++  +     
Sbjct: 232 VPPFEDVRLSVLNELQMYRQDIAYEEYLEWLRQRADIRKNA 272



 Score = 43.1 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 13/96 (13%)

Query: 26  LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
            + GL DA  +    +T   V    VP     +  ++       + G  V+   A     
Sbjct: 20  ALTGLVDAGHAPLPDTTAALVNGTPVPRDELQSVLQR-----RAQEGAPVDQLLA----- 69

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
               LD+++    L Q   ++G+      V   I +
Sbjct: 70  ---TLDDMIDEELLIQRASELGILRRDSNVRVAIIQ 102


>gi|72392211|ref|XP_846906.1| peptidyl-prolyl cis-trans isomerase/rotamase [Trypanosoma brucei
           TREU927]
 gi|62175211|gb|AAX69357.1| peptidyl-prolyl cis-trans isomerase/rotamase, putative [Trypanosoma
           brucei]
 gi|70802936|gb|AAZ12840.1| peptidyl-prolyl cis-trans isomerase/rotamase, putative [Trypanosoma
           brucei brucei strain 927/4 GUTat10.1]
          Length = 115

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 281 KEADEAFQSLKKGK-KFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           KE  +  Q +  G+  F + A ++   G   S   LG FS   +      D++ +L K G
Sbjct: 39  KELQKWSQRIASGEVSFEEAASQRSDCGSYASGGDLGFFSSGEMMKP-FEDAVRAL-KIG 96

Query: 337 DFTPVIHGSFGYVIAH 352
           D +P++    G  I  
Sbjct: 97  DISPIVQTDSGLHIIK 112


>gi|255023829|ref|ZP_05295815.1| foldase protein PrsA [Listeria monocytogenes FSL J1-208]
          Length = 67

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
            D +   + ++L  KGD +  +   +GY I  +   KP+   +F++ KK +      ++
Sbjct: 1   MDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTFEKDKKAVKASYLESQ 57


>gi|291231994|ref|XP_002735945.1| PREDICTED: protein (peptidyl-prolyl cis/trans isomerase)
           NIMA-interacting 1-like [Saccoglossus kowalevskii]
          Length = 152

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQ----SLKKGK-KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA E  +     +  G+  F +LA    +   +     LG F +  +      D
Sbjct: 67  ITRTKEEALEILKEHRRRIVSGEISFAELASTESDCSSAKRGGDLGPFGRGQMQKP-FED 125

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L K G+ +  +    G  I 
Sbjct: 126 ATFAL-KVGELSEPVFTDSGIHII 148


>gi|145640428|ref|ZP_01796012.1| stationary-phase survival protein SurA [Haemophilus influenzae
           R3021]
 gi|145275014|gb|EDK14876.1| stationary-phase survival protein SurA [Haemophilus influenzae
           22.4-21]
          Length = 162

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 26/155 (16%)

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSL-----KKGKKFIQLAEE 302
           L+   EK   +    +   V  ++       N  +A +    +          F   A +
Sbjct: 2   LKEAKEKGTAQKVMGKEYEVRHILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALK 61

Query: 303 QGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
             K     + G       P+      A ++   +K+G  +      FG+ I  V+ ++  
Sbjct: 62  YSKDYLSGANGGSLGYAFPETYAPQFAQTVVK-SKQGVISAPFKTEFGWHILEVTGVRDG 120

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
                     D+  +    KA E++     +L++ 
Sbjct: 121 ----------DLTAEAYTQKAYERLVN--TQLQDA 143


>gi|45658751|ref|YP_002837.1| hypothetical protein LIC12922 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601995|gb|AAS71474.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 362

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 46/376 (12%), Positives = 104/376 (27%), Gaps = 84/376 (22%)

Query: 22  FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
              FL + L     + S +  + +VG   +      ++  ++   + + +          
Sbjct: 34  MFVFLFF-LRSTHAAESLNRVIATVGTVSISELDLDDA-TEKYNRLQKHL-----KHEDY 86

Query: 82  SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
                 +I+D L+  A +D   E+  ++ +  RV  EI +           +   F   +
Sbjct: 87  RKSFRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRME---VMGITNRKQFEKTM 143

Query: 142 -AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
               G+  + ++      + +  ++ + +                               
Sbjct: 144 ETSSGMPFELWVTELPYQIKKGQLLQLKI------------------------------- 172

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
              A+  P+   +  W+ + KD         I Y +  +  +   I+          E+N
Sbjct: 173 ---AVPPPNEQEIRSWYNQNKDK----VGFEIRYRIISIAPENDSIQ----------EEN 215

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-DISLGSFSKEY 319
           +      EIR                   L     F  +A       +     G      
Sbjct: 216 RLYKEVSEIRKS----------------ILADPSSFALIAGSPRNDPALRARRGMVEWIS 259

Query: 320 IPD----VSLADSIFSLAKKGDFTPVIHGS-FGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
             D      +  +I +    G  + V       Y I  +   +P      + ++  I N 
Sbjct: 260 SFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEGKRP---TPMENLRGGIQNI 316

Query: 375 MRITKASEKVKEDYKR 390
           +   K  +      K 
Sbjct: 317 LYRDKEEDTFHRWLKE 332


>gi|312114549|ref|YP_004012145.1| hypothetical protein Rvan_1804 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219678|gb|ADP71046.1| hypothetical protein Rvan_1804 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 301

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 41/187 (21%)

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
           +  PSN  L  WFE ++ NY +PE   +S       +   + ++S+  L     +   + 
Sbjct: 110 VPTPSNDELKGWFESHRANYDSPERFDVSQFFVADLKTGNQKQVSD--LLETVREAVPQP 167

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
           ++ ++R+   L                       L++  G                    
Sbjct: 168 YTDQVRSYRNL-------------------SPENLSQVFGSDF----------------- 191

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
              +   LA +     V+    G+ IA V  + P+    F EVK  +       +  +K 
Sbjct: 192 ---AAALLANRDTTWRVLQSKQGWHIARVDALHPAVPAVFDEVKHIVKADWEAAQRRQKA 248

Query: 385 KEDYKRL 391
            E  + +
Sbjct: 249 LEAIRDM 255



 Score = 37.7 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 436 KEQLLFRVFGKDDPL----SKDHT--VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
             + L +VFG D       ++D T  V      +   ++    PA     +EV   VK D
Sbjct: 179 SPENLSQVFGSDFAAALLANRDTTWRVLQSKQGWHIARVDALHPAVPAVFDEVKHIVKAD 238

Query: 490 WKTVKTAEEVSSKANQL 506
           W+  +  ++       +
Sbjct: 239 WEAAQRRQKALEAIRDM 255


>gi|289809575|ref|ZP_06540204.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 250

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 76/236 (32%), Gaps = 15/236 (6%)

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKG 336
             Q++A+   +  + G  F +LA         +  G      I +   +     S AKKG
Sbjct: 16  DAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKG 75

Query: 337 DFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEF 394
           D    I    G+ I  V++++  S ++S  EV    I  +       ++ +   + +   
Sbjct: 76  DIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQARLKLEEIAAD 135

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           +  G +    +   K  S D    +  G           P     L ++           
Sbjct: 136 IKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL--------HKG 185

Query: 455 TVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
            ++ P  S     + E +  R  D+          +     K +EE ++   +   
Sbjct: 186 QISAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRA 241


>gi|219681515|ref|YP_002467900.1| survival protein SurA precursor [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471196|ref|ZP_05635195.1| survival protein SurA precursor [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624358|gb|ACL30513.1| survival protein SurA precursor [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 430

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 100/334 (29%), Gaps = 63/334 (18%)

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD-NKFSHDVFV 138
            +S  L +K+L+ L+  + + Q      +     ++   I    L      N F      
Sbjct: 60  LKSDFLKEKVLEKLIVDSLILQEANSKNINITKEQIDTVIKNIALKKHISVNHFK----K 115

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGM----FVGGMRPSNLLLDQA-KRFYFENRSVD 193
             L R   N   Y +   K+     +  +        +  S   ++   K+   +N    
Sbjct: 116 QILLRNIKNPSYYDNFIKKIEILLKMKTIQDYELHKRINISEQEVNTIFKKLIKDNEKFK 175

Query: 194 YIVLNNRHVPAIADPSNAV--------------LTQWFE---------KYKDNYRAPEYK 230
            I L+   +P+    S+                L + ++         K K  +   +  
Sbjct: 176 KINLSYILLPSFKQDSDNAVRNRTKIAENIVYKLKKGYDFEKLLIECEKNKSTFIVKKMF 235

Query: 231 -----RISYILFDVHEKEKKIEI-------SNDELQAEYEKNKEK-------YFSPEIRT 271
                 I    F      KK +I           +    + + +K       Y    +  
Sbjct: 236 WKPLLDIQNSFFKTLNIFKKGQILGPIVGDKGLYILKVNDIHHKKENIVTEFYMQHCLIK 295

Query: 272 VEQLVFPNQKEAD--EAFQSLKKGK-KFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
              ++   + +      ++++KKG   F    +              LG  SKE +    
Sbjct: 296 PSVILTNTEAKKKIFNIYENIKKGIYTFDDAVKNLSDDYYSSNKKGDLGWISKESLG--- 352

Query: 325 LA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
              +  F +  K + +  +  ++G+ I  + + +
Sbjct: 353 FDLNKKFLILDKNEISEPVKSNWGWHIFKILDRR 386



 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 29/214 (13%)

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
            +++    N+       +       +E  K+I IS  E+   ++K  +     +   +  
Sbjct: 126 SYYD----NFIKKIEILLKMKTIQDYELHKRINISEQEVNTIFKKLIKDNEKFKKINLSY 181

Query: 275 LVFPNQKE------------ADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEY 319
           ++ P+ K+            A+     LKKG  F +L    E+   +     +       
Sbjct: 182 ILLPSFKQDSDNAVRNRTKIAENIVYKLKKGYDFEKLLIECEKNKSTFIVKKMFWKPLLD 241

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI---KPSFTVSFQEVKKDIANQ-- 374
           I +        ++ KKG     I G  G  I  V++I   K +    F      I     
Sbjct: 242 IQNSFF--KTLNIFKKGQILGPIVGDKGLYILKVNDIHHKKENIVTEFYMQHCLIKPSVI 299

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
           +  T+A +K+   Y+ +++ +    + D+  +  
Sbjct: 300 LTNTEAKKKIFNIYENIKKGIY---TFDDAVKNL 330


>gi|239617251|ref|YP_002940573.1| hypothetical protein Kole_0859 [Kosmotoga olearia TBF 19.5.1]
 gi|239506082|gb|ACR79569.1| hypothetical protein Kole_0859 [Kosmotoga olearia TBF 19.5.1]
          Length = 323

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 70/218 (32%), Gaps = 38/218 (17%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK---- 70
           K  ++ L V F     + +  +   ++ V +V  + +    F+         I++K    
Sbjct: 3   KFLVISLLVLFSAGIFATSEINPDKTTPVATVNGEPITMYEFLAEVMPNYMEIAKKVEEV 62

Query: 71  ---IGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
                 V+ S  A    L   +K++L  ++      Q  + + +  D   +  +I    +
Sbjct: 63  DPLFSEVLTSTEAGKTLLTEYEKRVLAKMIERKLFLQLAKQLDVAIDMQALKEKIHNIII 122

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
                           L    I+ +    +YT        +  + GG+    + +     
Sbjct: 123 --------------QNLKENNISIEIADLYYT--------LKGYTGGLEMYEVRVLNETA 160

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
           +  +     Y  L +      A  +   + Q+++  K 
Sbjct: 161 YR-QTYDAIYQALTSD-----ATVTEEEIVQYYKANKK 192


>gi|330836278|ref|YP_004410919.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           coccoides DSM 17374]
 gi|329748181|gb|AEC01537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           coccoides DSM 17374]
          Length = 540

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/380 (11%), Positives = 99/380 (26%), Gaps = 66/380 (17%)

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD---HGRVWG 117
            Q  G++SQ      +  +   +        N V     +   +  GL+        V  
Sbjct: 107 NQVQGLMSQNPNAASDYNQLYQLW--NSAYQNEVFFVAANALAKKAGLDKTAGMEQLVAQ 164

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I  S  +      F   ++ S  A +    K YI    +    T ++   +  +R S+ 
Sbjct: 165 YIRESGYYTNDQGVFDATIYNSTPALQ----KSYIKKNVQEQLPTQIIISDLYTVRVSSA 220

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             +         R  +Y+       P           ++  +  + +             
Sbjct: 221 EKNYISDAAATVRDFEYVSFTTDSYPDALAV------EYATQNPEAFS------------ 262

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KF 296
                                             + ++   ++  A      ++ G   F
Sbjct: 263 -------------------------------QVGISRITVADETLALSLKSQIESGTLSF 291

Query: 297 IQLAEEQ---GKSLSDISLGSFSKEYIPDVSLAD---SIFSLAKKGDFTPVIHGSFGYVI 350
              A      G + +  + G+F    +      D   ++   +  G     +  S GY +
Sbjct: 292 EDAATANSIDGYAQNGGAAGTFRGYELSQFITQDIDRALVLSSSDGALVGPVAVSLGYAL 351

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
             +         S   V   I  ++             +  + FL    S        + 
Sbjct: 352 LRIDAAAQEADYSDPGVLSLIKTRIAQADPERMDAVLREEAQTFL-TAASATSFVDAAEA 410

Query: 411 VSIDLPLVDFAGKDVKGKEV 430
            S D+ +V     +V   ++
Sbjct: 411 ASFDVTVVATTPVNVSDSQL 430


>gi|290997217|ref|XP_002681178.1| rotamase domain-containing protein [Naegleria gruberi]
 gi|284094801|gb|EFC48434.1| rotamase domain-containing protein [Naegleria gruberi]
          Length = 172

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 30/112 (26%)

Query: 268 EIRTVEQLVFP-----------------NQKEADEAFQSLKK--------GKKFIQLAE- 301
           E   V  L+                   ++K+A E  + L++         +KF +LA  
Sbjct: 59  EQVKVSHLLIKHNQSRNPSSWKEKNITRSKKDATEILEGLREDIFNAEDMAEKFQELASV 118

Query: 302 --EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
             +   +     LG F +  +      D+ F L K G+ + ++    G  I 
Sbjct: 119 HSDCSSAKRGGDLGFFGRGQMQKP-FEDASFRL-KIGELSDIVSTDSGVHII 168


>gi|209545159|ref|YP_002277388.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532836|gb|ACI52773.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 452

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/325 (12%), Positives = 91/325 (28%), Gaps = 82/325 (25%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
            S  + +  +    +      N      G +   +   +         L  +IL  L+  
Sbjct: 52  TSQDAIIAIIDGTLLTRRDVDN-----RGRLFA-LSAGLTLSDDVMARLRPQILRQLIDE 105

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
                 +    +     ++   IA                      R G+ +    D   
Sbjct: 106 RLRQNEMLSRHINVSPDQIAASIADIE------------------RRNGMPKNALRDRLA 147

Query: 157 KM-LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
           +  +S T ++      +  S +L ++                           + A ++Q
Sbjct: 148 QDGISLTTMIDQIRVQLGWSQVLREEM--------------------GTRGRITAAEISQ 187

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
                ++     E  +  Y++ ++         S DEL+                     
Sbjct: 188 -----REEALRHEDGKPQYLISEIFIPVDDPRHSEDELKFT------------------- 223

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSL 332
                       Q L+ G  F  +A +  +   +L    +G   ++ + D  + +   ++
Sbjct: 224 --------QTIIQELRNGAPFPIVAAQFSQNQAALEGGLMGWVQEDSL-DPQVVEIAKAM 274

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIK 357
              G  +  I  + GYVIA ++  +
Sbjct: 275 P-PGAISNPIRVAGGYVIATLNGRR 298


>gi|41152183|ref|NP_957042.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Danio
           rerio]
 gi|37747984|gb|AAH59553.1| Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
           [Danio rerio]
          Length = 159

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQ----SLKKGKK-FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +  ++ EA +  Q     +K G++ F  LA +      + +   LG F +  +      D
Sbjct: 74  ITRSKDEALQLIQKYIEQIKSGEEEFESLASQFSDCSSARNGGDLGLFGRGQMQKP-FED 132

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L K GD +  +    G  I 
Sbjct: 133 ASFAL-KVGDMSGPVFTDSGVHII 155


>gi|219682071|ref|YP_002468455.1| survival protein SurA precursor [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621804|gb|ACL29960.1| survival protein SurA precursor [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311085883|gb|ADP65965.1| survival protein SurA precursor [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311087036|gb|ADP67116.1| survival protein SurA precursor [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087600|gb|ADP67679.1| survival protein SurA precursor [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 430

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 100/334 (29%), Gaps = 63/334 (18%)

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD-NKFSHDVFV 138
            +S  L +K+L+ L+  + + Q      +     ++   I    L      N F      
Sbjct: 60  LKSDFLKEKVLEKLIVDSLILQEANSKNINITKEQIDTVIKNIALKKHISVNHFK----K 115

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGM----FVGGMRPSNLLLDQA-KRFYFENRSVD 193
             L R   N   Y +   K+     +  +        +  S   ++   K+   +N    
Sbjct: 116 QILLRNIKNPSYYDNFIKKIEILLKMKTIQDYELHKRINISEQEVNTIFKKLIKDNEKFK 175

Query: 194 YIVLNNRHVPAIADPSNAV--------------LTQWFE---------KYKDNYRAPEYK 230
            I L+   +P+    S+                L + ++         K K  +   +  
Sbjct: 176 KINLSYILLPSFKQDSDNAVRNRIKIAENIVYKLKKGYDFEKLLIECEKNKSTFIVKKMF 235

Query: 231 -----RISYILFDVHEKEKKIEI-------SNDELQAEYEKNKEK-------YFSPEIRT 271
                 I    F      KK +I           +    + + +K       Y    +  
Sbjct: 236 WKPLLDIQNSFFKTLNIFKKGQILGPIVGDKGLYILKVNDIHHKKENIVTEFYMQHCLIK 295

Query: 272 VEQLVFPNQKEAD--EAFQSLKKGK-KFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
              ++   + +      ++++KKG   F    +              LG  SKE +    
Sbjct: 296 PSVILTNTEAKKKIFNIYENIKKGIYTFDDAVKNLSDDYYSSNKKGDLGWISKESLG--- 352

Query: 325 LA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
              +  F +  K + +  +  ++G+ I  + + +
Sbjct: 353 FDLNKKFLILDKNEISEPVKSNWGWHIFKILDRR 386



 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 29/214 (13%)

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
            +++    N+       +       +E  K+I IS  E+   ++K  +     +   +  
Sbjct: 126 SYYD----NFIKKIEILLKMKTIQDYELHKRINISEQEVNTIFKKLIKDNEKFKKINLSY 181

Query: 275 LVFPNQKE------------ADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEY 319
           ++ P+ K+            A+     LKKG  F +L    E+   +     +       
Sbjct: 182 ILLPSFKQDSDNAVRNRIKIAENIVYKLKKGYDFEKLLIECEKNKSTFIVKKMFWKPLLD 241

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI---KPSFTVSFQEVKKDIANQ-- 374
           I +        ++ KKG     I G  G  I  V++I   K +    F      I     
Sbjct: 242 IQNSFF--KTLNIFKKGQILGPIVGDKGLYILKVNDIHHKKENIVTEFYMQHCLIKPSVI 299

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
           +  T+A +K+   Y+ +++ +    + D+  +  
Sbjct: 300 LTNTEAKKKIFNIYENIKKGIY---TFDDAVKNL 330


>gi|51598302|ref|YP_072490.1| hypothetical protein BG0039 [Borrelia garinii PBi]
 gi|51572873|gb|AAU06898.1| hypothetical protein BG0039 [Borrelia garinii PBi]
          Length = 500

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 86/271 (31%), Gaps = 35/271 (12%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKV------PFSSFINSWK 61
                  L+++ + F+I  L   +F  S SS +   G    Q +       F+ ++N + 
Sbjct: 23  GIWGVFALILIVLGFIIAPLLPGIFDNSHSSGL-KFGSYKGQPIYYKKDSKFAKYVNYYS 81

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKI--LDNL--VSGATLDQFIEDIGLEADHGRVWG 117
                +            A+++ +D     L  +  V        ++          +  
Sbjct: 82  NLYSRLQGN---------AKNINIDYNAWYLAFMKYVEDIAFFDLVKKYNFYISKEMLNK 132

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            + RSP +   +  FS   +   +      + +  D   + +  ++V       +   + 
Sbjct: 133 NLLRSPEYLDSNGNFSSKRY---IKASDYQKVKIYDDMVENILFSNVKIFLNSNLIFPDS 189

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           L +  K      R + Y+ L+ +        S      + EK  + ++      I +   
Sbjct: 190 LFNLIKDMSTVERHISYLSLSYQDFSNKEAIS------YAEKNLNLFKRLSLASIRFKNM 243

Query: 238 DVHEKEKKIEISN---DELQAEYEKNKEKYF 265
           +  +      ++    +EL   Y  +   + 
Sbjct: 244 NDAKSAYDKLLNKTPFEELAKLYSDDIANFK 274


>gi|87198910|ref|YP_496167.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134591|gb|ABD25333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 456

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 57/471 (12%), Positives = 131/471 (27%), Gaps = 88/471 (18%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V  + +  +         L +I    G  ++ E      L  ++L NL+      Q  
Sbjct: 67  AIVNGEIITGTDVEQR----LALIVSANGGKIDGEE--KERLRMQVLRNLIDETLQIQEA 120

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
           +   + AD G+V    A       ++   S D     LAR G +           ++  +
Sbjct: 121 KAADVPADDGQVD---ASYERVATQNFGQSADALEKYLARIGSSAASLKRQIRGEIAWQN 177

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++                                  R+V    + S   + +  ++ + +
Sbjct: 178 LLR---------------------------------RNVQPFVNVSEGEVQEAMQRLQAS 204

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
               EY+     L    E + ++                 + + E               
Sbjct: 205 KGTEEYRIGEIFLAATEENKPQV-----------------FANAEK-------------- 233

Query: 284 DEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
               + LK+G  F+  A    E   +     LG      +P   LA +  S+   G    
Sbjct: 234 --IVEQLKQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLP-TELATTAASMG-PGQLAG 289

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
            +    G+ I ++ + +   T    + +  + +      + E  K     +    A   +
Sbjct: 290 PVEIRGGFSILYLIDKRQVLT---ADPRDALLS--LKQISIEFPKGATNEIATKRAAEFA 344

Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
               + +      +          V   ++ A      L   +       +     ++ +
Sbjct: 345 AAVKAIK-GCGDAEAQANKIGATVVANDQIKARDLPGALQETLLNLPIGQTTPPFGSIEE 403

Query: 461 GSYMWVQIKESIPA--RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
           G  + +      P        +E++  ++ D    +    +       V+E
Sbjct: 404 GVRVLMLCGRDDPQVNSGPSFDEMMAQIEDDRVNKRAQTYLRDLRRDAVIE 454


>gi|159129278|gb|EDP54392.1| peptidyl-prolyl cis/trans isomerase [Aspergillus fumigatus A1163]
          Length = 192

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 270 RTVEQLVFPNQKEADEAF----QSLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIP 321
           R  E  +  +++EA E      Q ++ G+     +A    +   +     LG F +  + 
Sbjct: 105 REAE--ITRSKEEAIEILRGHEQRIRSGEVSLGDIAVSESDCSSARKKGDLGFFGRGEM- 161

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                D+ F+L + G  + ++  + G  +  
Sbjct: 162 QKEFEDAAFAL-QPGQVSGIVETASGVHLIE 191


>gi|309789583|ref|ZP_07684164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
           trichoides DG6]
 gi|308228319|gb|EFO81966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
           trichoides DG6]
          Length = 317

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 14/134 (10%)

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSK 317
            +    ++     L   ++ EAD+A   L+ G  F  LA+E+ K L        LG    
Sbjct: 157 ARNTRADMFHARMLQLASEAEADQALADLQAGADFASLAKERSKDLETAPKGGDLGWEPI 216

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKK-DIANQ 374
             +P   L  + F+ A        I    G  + +  V   +     + ++ +  +   Q
Sbjct: 217 GNLP-PELDSAGFAQA----LNTPIKIQVGESWYVFEVLERQAG--PNLEDKRAFEDFTQ 269

Query: 375 MRITKASEKVKEDY 388
           ++ +  +++   + 
Sbjct: 270 LQQSMGAQQFYTET 283



 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 56/175 (32%), Gaps = 13/175 (7%)

Query: 31  SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG-MISQKIGFVVNSERARSVGLDKKI 89
             AL   + +  ++ VG      + F    + ++G  I+  I      E+  ++  D+K+
Sbjct: 30  GAALQVSATNPQILRVGPDTYTLNDFTQRMQADIGPAIANMIQSGQTREQIETLANDQKV 89

Query: 90  ----LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF---SHDVFVSRLA 142
                D +V    L Q+    G+  D  +V              + F   S D  +   A
Sbjct: 90  RAGIFDAMVQELLLMQYARSHGIGVDPAQVDANFFSMTRPFDPSDPFASPSADRLMQ--A 147

Query: 143 REGINEKEYIDHYTKML---SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           ++ +  +    +    +       +          ++L          + RS D 
Sbjct: 148 QQQLTLEVLARNTRADMFHARMLQLASEAEADQALADLQAGADFASLAKERSKDL 202



 Score = 37.3 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 44/140 (31%), Gaps = 11/140 (7%)

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
              +   LE +  + + D    +  +  S       L   + G +F  + K     L T 
Sbjct: 146 QAQQQLTLEVLARNTRADMFHARMLQLASEAEADQALADLQAGADFASLAKERSKDLETA 205

Query: 532 N-----QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
                     + N        G +Q  + P+       I+ G S+ VF+V   + GP  E
Sbjct: 206 PKGGDLGWEPIGNLPPELDSAGFAQALNTPI------KIQVGESWYVFEVLERQAGPNLE 259

Query: 587 KDKFISYLTQMMNKDLLDSV 606
             +     TQ+         
Sbjct: 260 DKRAFEDFTQLQQSMGAQQF 279


>gi|261190124|ref|XP_002621472.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Ajellomyces dermatitidis
           SLH14081]
 gi|239591300|gb|EEQ73881.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Ajellomyces dermatitidis
           SLH14081]
 gi|239606360|gb|EEQ83347.1| peptidyl-prolyl cis-trans isomerase [Ajellomyces dermatitidis ER-3]
          Length = 181

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAF----QSLKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  +++EA E      + ++ G+           +   +     LG F +  +      +
Sbjct: 96  ITRSKEEALEILRGHEERIRAGETTLGDIAMSESDCSSARKKGDLGFFGRGEM-QAEFEE 154

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L K G  + ++  + G  +  
Sbjct: 155 AAFAL-KPGQVSGIVETASGVHLIE 178


>gi|145520387|ref|XP_001446049.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413526|emb|CAK78652.1| unnamed protein product [Paramecium tetraurelia]
          Length = 119

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 13/96 (13%)

Query: 267 PEIRTVEQLVFPNQKEAD----EAFQSLKKGKK-FIQLAEEQGKS------LSDISLGSF 315
           P  R  ++ V  +  +A+    E    ++     F ++A+E+ +            LG F
Sbjct: 22  PYDRVRDKQVTRSDADAEKGIREIRAQVENNLNLFAKIAQERSEKRQCSSCQKGGDLGDF 81

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           ++  +      D  F+L K G+ +  +    G+ I 
Sbjct: 82  TRGQMQKQ-FEDVAFAL-KVGELSQPVKSDSGWHII 115


>gi|73748896|ref|YP_308135.1| putative protein export protein [Dehalococcoides sp. CBDB1]
 gi|73660612|emb|CAI83219.1| putative protein export protein [Dehalococcoides sp. CBDB1]
          Length = 422

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 55/423 (13%), Positives = 132/423 (31%), Gaps = 60/423 (14%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSF 56
            E  RK  R   A   L V+ +   + G+               +TV++VG  K   + F
Sbjct: 21  FEAQRKRQRIIFATG-LSVIGIVLALVGIGVYKGWYVDQYKPMHTTVLTVGDTKYNVAYF 79

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           +++ +   G  SQ            +      + + +     + +   ++G       + 
Sbjct: 80  VDALRHFTGGDSQ-----------YAYYFIDAVSERIQLNQLMVEKASEMGYTISDDEID 128

Query: 117 GEIARS-----PLFHGK------DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
             I  +     P            +K   + F  ++ +      E  +    +L   +  
Sbjct: 129 AAIEENSLTDVPAVRDIVRASLLTDKLKTEYFDPQVPQ----TAEQREALAMLLESENAA 184

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
              + G+        +A     E+ +      ++  +      +   +T  +        
Sbjct: 185 SDVLAGITTDEEFAAKAAELSLESNT----KTDSGSIGFKPAGT---ITSLYGS-----E 232

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
             E    S   +D    +   ++S         +  E+    E      ++ P+++ A E
Sbjct: 233 ILEKYIFSTEGYDYALVQD-ADVSKQRA-YWLMEVLERKTDSEQIHTLGMLLPSEQVALE 290

Query: 286 AFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFSLAKK-GDFTP 340
               L  G+ +  LA E  +      +   +   +   +P+ ++AD IF+   +      
Sbjct: 291 VKARLAAGESWGDLAVEFSQLANVEENQGDMDWITFSSVPE-NVADIIFATDVELNTVLD 349

Query: 341 VIHGSFGYV-----IAHVSNIKPSFTVSFQEVKKDIANQM---RITKASEKVKEDYKRLE 392
            I     Y      I  + +I  +  +S  + K  I++++        +  + +      
Sbjct: 350 PIQDDTNYTRGGCWIVRLKSIDENRQLSEDDRKLLISDKLDQWTADLKAANLDKLTNTFS 409

Query: 393 EFL 395
           + L
Sbjct: 410 DEL 412


>gi|329890123|ref|ZP_08268466.1| PPIC-type PPIASE domain protein [Brevundimonas diminuta ATCC 11568]
 gi|328845424|gb|EGF94988.1| PPIC-type PPIASE domain protein [Brevundimonas diminuta ATCC 11568]
          Length = 457

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/413 (11%), Positives = 107/413 (25%), Gaps = 87/413 (21%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
               + +V  + +            + M        V         + ++ L++L+    
Sbjct: 67  SDGIIATVNDRIITGFDLRQRMLVLMAM------TQVQPTEENIGAIQQQALNDLIDQHL 120

Query: 99  LDQF-IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
                 +   L+     +  EIA                      + G     YI+   +
Sbjct: 121 QAAELAKFEQLKIGDAEIDQEIADMA------------------RQAGTTPASYINFLEQ 162

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS-VDYIVLNNRHVPAIADPSNAVLTQW 216
                       GG+            F  + R+ + +  L        A    + + Q 
Sbjct: 163 ------------GGISIP--------AFREQMRTEIGWRELVGGRFRDRARVGKSQIEQT 202

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
             +  ++   P+Y      L        +                               
Sbjct: 203 MRQMTESATKPQYLIGEIYLEAARVGGMQ------------------------------- 231

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333
                 A +  Q + +G  F+ +A +   + S       G   +  +       S+    
Sbjct: 232 -EAMNGARQLVQQMIQGAPFMAVARQFSAAPSAARGGDAGWVVQGTV--QPALQSVMDTL 288

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           + G  +  I    G  I ++ + +   + S  ++K  +  ++       +V    +RLE 
Sbjct: 289 EAGQLSNPIPVDGGVYILYMRDKRSGASTSMVKMK-QVMVELPENADEAQVAAATQRLEA 347

Query: 394 FLAL---GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
                     +        ++  DL   D A    + ++VA       +   V
Sbjct: 348 LRGQLTCDNILTRARSEPGLLGADLGESDVADLLPQFQQVARSAEVGSVSTAV 400


>gi|146416499|ref|XP_001484219.1| hypothetical protein PGUG_03600 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 175

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 49/164 (29%), Gaps = 41/164 (25%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-----EIRTVEQ 274
            K+ +     + +S+      +K K        L A   + KE+ F P            
Sbjct: 19  NKEYFLNQATRELSWEPPFGTDKSK--------LDAYISQYKERGFKPVVPSDGKIRTSH 70

Query: 275 LVFP------------------NQKEADEAFQS-----LKKGKKFIQLAEEQGKSLS--- 308
            +                     + EA    +      +   KK  +LAE +    S   
Sbjct: 71  FLVKHKDSRRPRSWKSPDGISLTRDEAIAIAKKYRQQIVNGDKKLSELAEHESDCSSHSQ 130

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
              LG F K  +   S  ++ F L   G+ + ++    G  I  
Sbjct: 131 GGDLGFFGKGQM-QPSFEEAAFGLH-VGEISDLVESDSGIHIIQ 172


>gi|256599528|pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 46  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 105

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 106 LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|225552295|ref|ZP_03773235.1| conserved hypothetical protein [Borrelia sp. SV1]
 gi|225371293|gb|EEH00723.1| conserved hypothetical protein [Borrelia sp. SV1]
          Length = 500

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/274 (10%), Positives = 76/274 (27%), Gaps = 37/274 (13%)

Query: 10  RTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVG---RQKV------PFS 54
           +         ++ + F         G+ D   S       +  G    Q +       F+
Sbjct: 20  KKVGMWGIFALILIVFGFIIAPLLPGIFDNAHSSG-----LKFGSYKGQPIYYKKDSKFA 74

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
            ++N +      +      +     A  +   K +             ++          
Sbjct: 75  KYVNYYSNLYSRLQGNAKNINTDYNAWYLAFMKYV-----EDVAFLDLVKKYNFYISKEM 129

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           +   + +SP +      FS   +          + +  D   + +  ++V       +  
Sbjct: 130 LNKNLLKSPEYLDSSGNFSSKRYN---KASDYQKVKIYDDMVENILFSNVKIFLNSNLIF 186

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
            + L +  K      R + Y+ L+ +        SN  +  + EK  + ++      I +
Sbjct: 187 PDSLFNLIKDMSTVERHISYLSLSYQDF------SNKEVISYAEKNLNLFKHLSLASIRF 240

Query: 235 ILFDVHEKEKKIEISN---DELQAEYEKNKEKYF 265
              +         ++    +EL   Y  +   + 
Sbjct: 241 KNMNDARNAHDKLLNKTPFEELAKLYSDDIANFK 274


>gi|146322860|ref|XP_755189.2| peptidyl-prolyl cis/trans isomerase [Aspergillus fumigatus Af293]
 gi|129558496|gb|EAL93151.2| peptidyl-prolyl cis/trans isomerase [Aspergillus fumigatus Af293]
          Length = 175

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 270 RTVEQLVFPNQKEADEAF----QSLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIP 321
           R  E  +  +++EA E      Q ++ G+     +A    +   +     LG F +  + 
Sbjct: 88  REAE--ITRSKEEAIEILRGHEQRIRSGEVSLGDIAVSESDCSSARKKGDLGFFGRGEM- 144

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                D+ F+L + G  + ++  + G  +  
Sbjct: 145 QKEFEDAAFAL-QPGQVSGIVETASGVHLIE 174


>gi|302560250|ref|ZP_07312592.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
 gi|302477868|gb|EFL40961.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
          Length = 215

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 6/138 (4%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVGLDKKILDNLVSGATL 99
               VG +++  S   N   +        +      ++  AR+  L +  L ++V    L
Sbjct: 33  AAAVVGGERITVSQLENRVDEVRAAQRAAVPDDAQYQQAIARTGTLTRDTLHSMVLDRVL 92

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           ++   D G+      V    +            + +   + L + GI  +   D++   +
Sbjct: 93  ERAARDAGVSVTRKEVQQMRSGLE--QQTGGAEALEA--AWLQQYGIPPQRLDDNFRLQV 148

Query: 160 SRTDVVGMFVGGMRPSNL 177
               +             
Sbjct: 149 QAQKLAQRLGTDTSRPEF 166


>gi|285016918|ref|YP_003374629.1| ppic-type peptidyl-prolyl cis-trans isomerase; protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472136|emb|CBA14643.1| hypothetical ppic-type peptidyl-prolyl cis-trans isomerase; protein
           [Xanthomonas albilineans]
          Length = 290

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 7/113 (6%)

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS---LAKKGD 337
           + A+   + L  G  F  LA  +    +  + G           LAD+  +         
Sbjct: 167 QRAEALKRQLDGGADFATLAMHESDDGATAAEGGQLSPTF-GRYLADAFVAPIHQLAVNQ 225

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            +  + G  GY + ++     +    F+ V+  I  Q+R   A++ ++   + 
Sbjct: 226 VSAPVRGPDGYHLIYLDAKTDAR---FEAVRGQIELQLREQAAADAMQRLRQA 275


>gi|315641846|ref|ZP_07896850.1| peptidyl-prolyl cis-trans isomerase [Enterococcus italicus DSM
           15952]
 gi|315482521|gb|EFU73060.1| peptidyl-prolyl cis-trans isomerase [Enterococcus italicus DSM
           15952]
          Length = 341

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 61/211 (28%), Gaps = 30/211 (14%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----- 224
             +  S+   +       +  + + I+            S   + + + +    Y     
Sbjct: 41  NKITVSDFYAEAKLTSANQQLARNMIIYQAFEDKYGDKVSQKQVDKQYNQTAKQYGDSFE 100

Query: 225 ---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
                    +    K I   L      +  +++++ + +A +E              + +
Sbjct: 101 SQLESAGYTKDSYKKAIKQQLAMEAGLKAHVKLTDADYKAAWESFHP------EVEAQII 154

Query: 276 VFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFS 331
              ++ EA E      K G  F ++A+E+    +    G   +F        +   +   
Sbjct: 155 QVASEDEAKEVKTEASKDGADFAKIAKEKSTDSTTKEDGGKVTFDSTSTTIPAEVQAAAW 214

Query: 332 LAKKGDFTPVIHGSF------GYVIAHVSNI 356
             K G+ +  I  +        Y I  +   
Sbjct: 215 KLKDGEISDPIAVTNSSTYTQSYYIIKMVKT 245


>gi|159475603|ref|XP_001695908.1| peptidyl-prolyl cis-trans isomerase, parvulin-type [Chlamydomonas
           reinhardtii]
 gi|158275468|gb|EDP01245.1| peptidyl-prolyl cis-trans isomerase, parvulin-type [Chlamydomonas
           reinhardtii]
          Length = 255

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 27/117 (23%)

Query: 260 NKEKYFSPEIRTVEQLVFPNQK--------------EADEAFQSLK-------KGK-KFI 297
           +K    +        L+  ++                 +EA   ++       KG+ +F 
Sbjct: 137 HKRAAMADARVRASHLLVKHKDVRRPSSWKEPVVTRTREEALAMIEHFHSMLVKGEVEFA 196

Query: 298 QLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            LA ++     +     LG F +  +      D+ ++L K G+ +  +    G  + 
Sbjct: 197 ALAAQESHCSSAKRGGDLGEFGRGEMQKP-FEDATYAL-KVGELSGPVFSDSGVHLI 251


>gi|296313594|ref|ZP_06863535.1| hypothetical protein NEIPOLOT_00405 [Neisseria polysaccharea ATCC
           43768]
 gi|296839828|gb|EFH23766.1| hypothetical protein NEIPOLOT_00405 [Neisseria polysaccharea ATCC
           43768]
          Length = 251

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 21/230 (9%)

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
            ++G        S     QA R     R     VL N  + A  D  +  +   F+  + 
Sbjct: 36  QLMGQPDLHTEQSQKPDGQAIRNDAVRRLQTLEVLKNGALQAGLD-KDQGVQNRFKIAEA 94

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
           ++ A EY R           E+   +S  EL+  YE+            ++Q+ F  ++E
Sbjct: 95  SFYAQEYVRF---------LERSETVSESELRQFYERQIRMI------KLQQVGFATEEE 139

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PV 341
           A +A Q L KG  F  L +    +           + +P+   +   F+   +GD T   
Sbjct: 140 ARQAQQLLLKGLSFEGLMKRYPNNEQAFD-DFIMAQQLPEPLSSQ--FAAMNRGDVTRNP 196

Query: 342 IHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +     Y +  +S + K      F+ V+  +   ++  K   K+    + 
Sbjct: 197 VELGGRYYLFKLSEVGKNPDAQPFELVRNQLEQGLKQEKVRLKIDALLEE 246


>gi|145609147|ref|XP_367478.2| hypothetical protein MGG_07389 [Magnaporthe oryzae 70-15]
 gi|145016566|gb|EDK00996.1| hypothetical protein MGG_07389 [Magnaporthe oryzae 70-15]
          Length = 178

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 24/111 (21%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
           KE+ I  + ++ +   E +K++  S E                 +  +L   +     A 
Sbjct: 89  KEENITRTKEDARRIIEAHKDRIASGE----------------ASLAALATTESDCSSAR 132

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           ++G       LG F +  +      ++ F+L K G+ + V+  + G  +  
Sbjct: 133 KRG------DLGFFGRGDM-QKEFEEAAFAL-KPGEISGVVDTASGLHLIE 175


>gi|320587658|gb|EFX00133.1| peptidyl-prolyl cis trans isomerase [Grosmannia clavigera kw1407]
          Length = 182

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 12/102 (11%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEA----FQSLKKGK-KFIQLA---EEQGKSLSDI 310
           K+++       R  E  +  +++EA          +++G+    +LA    +   +    
Sbjct: 82  KHRDSRRPASWREAE--ITRSKEEARSIISGYEDRMRRGEISLGELALTESDCSSARKSG 139

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            LG F +  +      D+ F+L K G+ + +I  + G  +  
Sbjct: 140 DLGYFGRGDM-QKEFEDAAFAL-KPGEVSGIIETASGLHLIE 179


>gi|57101996|ref|XP_542080.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase
           NIMA-interacting 1 (Rotamase Pin1) (PPIase Pin1) [Canis
           familiaris]
          Length = 163

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 273 EQLVFPNQKEADEAF----QSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
           ++ +   ++EA E      Q +K G+  F  LA +      + +   LG+FS+  +    
Sbjct: 75  QEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKP- 133

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIA 351
             D+ F+L + G+ +  +    G  I 
Sbjct: 134 FEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|217978373|ref|YP_002362520.1| hypothetical protein Msil_2224 [Methylocella silvestris BL2]
 gi|217503749|gb|ACK51158.1| conserved hypothetical protein [Methylocella silvestris BL2]
          Length = 315

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/142 (11%), Positives = 40/142 (28%), Gaps = 18/142 (12%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V S+    +         K                   R     +  +++L         
Sbjct: 41  VASINGDPITNIDIDQRMKLLR--------------VLRKPATREAAIESLFRDRLQIHE 86

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            E  G+      +  +I ++      +        +S L   G++E ++  ++   L+ T
Sbjct: 87  AEKYGVNPRDADISQQIVKT----ATEMNLQPQALLSALQAAGVSEDQFKSYFRANLAFT 142

Query: 163 DVVGMFVGGMRPSNLLLDQAKR 184
            +V     G+  S   +     
Sbjct: 143 VLVQALNKGVEASETQVRAELE 164


>gi|312079986|ref|XP_003142408.1| Pin1-type peptidyl-prolyl cis-trans isomerase [Loa loa]
 gi|307762427|gb|EFO21661.1| Pin1-type peptidyl-prolyl cis-trans isomerase [Loa loa]
          Length = 186

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
              +++   +K+ +EA     K ++  +   +   +     LG F +  +   S  D+ F
Sbjct: 104 DARKILIGYRKQIEEASDKKSKLRELAKEFSDCSSAKRGGDLGFFKRRQM-QKSFEDAAF 162

Query: 331 SLAKKGDFTPVIHGSFGYVIAH 352
           +L   G  + V+    G  + +
Sbjct: 163 ALG-VGQLSDVVDTDSGLHLIY 183


>gi|167747442|ref|ZP_02419569.1| hypothetical protein ANACAC_02162 [Anaerostipes caccae DSM 14662]
 gi|317471171|ref|ZP_07930542.1| ppic-type ppiase domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|167652804|gb|EDR96933.1| hypothetical protein ANACAC_02162 [Anaerostipes caccae DSM 14662]
 gi|316901386|gb|EFV23329.1| ppic-type ppiase domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 370

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 64/163 (39%), Gaps = 12/163 (7%)

Query: 232 ISYILFDVHEKEKKIEISNDELQ--AEYE-----KNKEKYFSPEIRTVEQLVFPNQKEAD 284
           I+  + +   ++  +++++DE +    Y+     K  +     E+    +      K+A 
Sbjct: 158 IAQKVMNAIIEKADVKVTDDEAKTVKVYKLVFTTKKTDSKTGKEVNMTAKEKAAQLKKAK 217

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           EA +++KKG+    +A++      +        + +      D+   L KK   + V+  
Sbjct: 218 EALKAIKKGQSVKAVAKKYKVDTDNEE-SYTKGKAVLGTKFEDAASKL-KKNQVSGVVET 275

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
              YVI  +    P+        K  +  + +  +A +KV + 
Sbjct: 276 DDAYVIIKML--NPNVKSELATSKSTLLQE-KQQEAYQKVYKK 315


>gi|293365248|ref|ZP_06611965.1| peptidyl-prolyl cis-trans isomerase [Streptococcus oralis ATCC
           35037]
 gi|307703788|ref|ZP_07640729.1| foldase protein prsA [Streptococcus oralis ATCC 35037]
 gi|315613010|ref|ZP_07887921.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis ATCC
           49296]
 gi|291316698|gb|EFE57134.1| peptidyl-prolyl cis-trans isomerase [Streptococcus oralis ATCC
           35037]
 gi|307622623|gb|EFO01619.1| foldase protein prsA [Streptococcus oralis ATCC 35037]
 gi|315315120|gb|EFU63161.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis ATCC
           49296]
          Length = 313

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 79/252 (31%), Gaps = 37/252 (14%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I E ++ +      +   V+            L    ++ + +    +    +     A 
Sbjct: 38  ITEHQFFEEVKNNPTAQQVL------------LNMTIQKVFEQQYGSEVTDKDVDDAVA- 84

Query: 206 ADPSNAVLTQWFEKY----KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
                    ++ + Y    +     PE ++       + E   K    ++     Y+K  
Sbjct: 85  -----EEQKKYGDSYNSVLQRAGMTPETRKAQIRTSKLVELAVKKAAESELTDEAYQKAF 139

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLG----SFS 316
           E Y      T + +   N+ +A E  +  K  G  F QLA++          G      S
Sbjct: 140 ESYTPD--VTAQIIRLDNEDKAKEVLEKAKAEGADFAQLAKDNSNDDKTKENGGEITFDS 197

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIH------GSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                   +  + F+L   G  + VI        S  + I  V+      + + ++ K+ 
Sbjct: 198 ASTELPEQVKKAAFALDVNG-VSDVITATGTQAYSSQFYIIKVTKKTE-KSSNIEDYKEK 255

Query: 371 IANQMRITKASE 382
           +   +   K ++
Sbjct: 256 LKTIILTQKQND 267


>gi|219685280|ref|ZP_03540099.1| conserved hypothetical protein [Borrelia garinii Far04]
 gi|219673053|gb|EED30073.1| conserved hypothetical protein [Borrelia garinii Far04]
          Length = 500

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 81/272 (29%), Gaps = 27/272 (9%)

Query: 6   RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKV------PFSSF 56
           R+          L+++   F+I  L   +F  + SS +   G    Q +       F+ +
Sbjct: 18  REKKVGIWGIFALILIVFGFIIAPLLPGIFDNAHSSGL-KFGSYKGQPIYYKKDSKFAKY 76

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
           +N +      +    G V N     +           V        I+          + 
Sbjct: 77  VNYYSNLYSRLQ---GNVKNINIDYNAWY--LAFMKYVEDIAFFDLIKKYNFYISKEMLN 131

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             + RSP +   +  FS   +          + +  D   + +  ++V       +   +
Sbjct: 132 KNLLRSPEYLDSNGNFSSKRYN---KASDYQKVKIYDDMVENILFSNVKIFLNSNLIFPD 188

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
            L +  K      R + Y+ L+ +        S      + EK  + ++      I +  
Sbjct: 189 SLFNLIKDMSTVERHISYLSLSYQDFSNKEAIS------YAEKNLNLFKRLSLASIRFKN 242

Query: 237 FDVHEKEKKIEISN---DELQAEYEKNKEKYF 265
            +         ++    +EL   Y  +   + 
Sbjct: 243 MNDARNAYDKLLNKTPFEELAKLYSDDIANFK 274


>gi|170572126|ref|XP_001891992.1| Pin1-type peptidyl-prolyl cis-trans isomerase, BmPin1 [Brugia
           malayi]
 gi|158603155|gb|EDP39196.1| Pin1-type peptidyl-prolyl cis-trans isomerase, BmPin1 [Brugia
           malayi]
          Length = 186

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
              +++   +K+ +EA     K +   +   +   +     LG F +  +   S  D+ F
Sbjct: 104 DARKILAGYRKQIEEAXDKKSKLRDLAKEFSDCSSAKRGGDLGFFKRRQM-QKSFEDAAF 162

Query: 331 SLAKKGDFTPVIHGSFGYVIAH 352
           +L   G  + ++    G  + +
Sbjct: 163 ALG-VGQLSDIVDTDSGLHLIY 183


>gi|162451693|ref|YP_001614060.1| foldase protein prsA 4 precursor [Sorangium cellulosum 'So ce 56']
 gi|161162275|emb|CAN93580.1| Foldase protein prsA 4 precursor (EC 5.2.1.8) [Sorangium cellulosum
           'So ce 56']
          Length = 172

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 283 ADEAFQSLKKGKKF----IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           A EA   ++ G  F     Q +EE G +    SLG+  +  +     AD+ F L +    
Sbjct: 98  AMEARDKIRGGADFGEAVAQYSEEAGAASRGGSLGTVERADVL-PPFADAAFEL-ELQQL 155

Query: 339 TPVIHGSFGYVIA 351
           + V+   +G+ + 
Sbjct: 156 SDVVETRYGFHVI 168


>gi|262039506|ref|ZP_06012808.1| putative liporotein [Leptotrichia goodfellowii F0264]
 gi|261746487|gb|EEY34024.1| putative liporotein [Leptotrichia goodfellowii F0264]
          Length = 299

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 16/160 (10%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD----EAFQSLKKGKKFIQL 299
             + +++DE +  YE N + +  PE     QL+     E D       ++     KF +L
Sbjct: 123 NSVNVTDDEAKKIYEANLKNFERPEDSVRLQLIVTPASEKDKAEAALKEAKANPVKFGEL 182

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD------SIFSLAKKGDFTP--VIHGSFGYVIA 351
             +     +  +      + IP  +LA+           A+KG      +I G   Y I 
Sbjct: 183 VRKYTGVQNGSTG---ETDEIPMSALAEKYAPISEAVKNAQKGQIIDNVIIVGDEAY-IV 238

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            V    P   V+F  VK  I  QM+ +K  E+ ++  + +
Sbjct: 239 KVLEKNPKGVVAFDVVKDQIKAQMKASKRQEETQKFMEDV 278



 Score = 37.7 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 9/157 (5%)

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
             I  +   +F+  +  +  Q+ +T ASEK  +    L+E  A      E+ R+      
Sbjct: 133 KKIYEANLKNFERPEDSVRLQLIVTPASEK-DKAEAALKEAKANPVKFGELVRKY----- 186

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF-GKDDPLSKDHTVALPDGSYMWVQIKESI 472
              + + +  +     ++A+  K   +             D+ + + D +Y+ V++ E  
Sbjct: 187 -TGVQNGSTGETDEIPMSALAEKYAPISEAVKNAQKGQIIDNVIIVGDEAYI-VKVLEKN 244

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
           P      + V   +K   K  K  EE       +  E
Sbjct: 245 PKGVVAFDVVKDQIKAQMKASKRQEETQKFMEDVTRE 281


>gi|162149098|ref|YP_001603559.1| peptidyl-prolyl cis-trans isomerase SurA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787675|emb|CAP57271.1| Peptidyl-prolyl cis-trans isomerase SurA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 459

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/325 (12%), Positives = 91/325 (28%), Gaps = 82/325 (25%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
            S  + +  +    +      N      G +   +   +         L  +IL  L+  
Sbjct: 59  TSQDAIIAIIDGTLLTRRDVDN-----RGRLFA-LSAGLTLSDDVMARLRPQILRQLIDE 112

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
                 +    +     ++   IA                      R G+ +    D   
Sbjct: 113 RLRQNEMLSRHINVSPDQIAASIADIE------------------RRNGMPKNALRDRLA 154

Query: 157 KM-LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
           +  +S T ++      +  S +L ++                           + A ++Q
Sbjct: 155 QDGISLTTMIDQIRVQLGWSQVLREEM--------------------GTRGRITAAEISQ 194

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
                ++     E  +  Y++ ++         S DEL+                     
Sbjct: 195 -----REEALRHEDGKPQYLISEIFIPVDDPRHSEDELKFT------------------- 230

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSL 332
                       Q L+ G  F  +A +  +   +L    +G   ++ + D  + +   ++
Sbjct: 231 --------QTIIQELRNGAPFPIVAAQFSQNQAALEGGLMGWVQEDSL-DPQVVEIAKAM 281

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIK 357
              G  +  I  + GYVIA ++  +
Sbjct: 282 P-PGAISNPIRVAGGYVIATLNGRR 305


>gi|306826547|ref|ZP_07459856.1| peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes ATCC
           10782]
 gi|304431274|gb|EFM34274.1| peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes ATCC
           10782]
          Length = 316

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 22/211 (10%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T +V M    +  S+   +       +   +  ++            S+  + + +++ 
Sbjct: 36  NTKLVSMKGDTITVSDFYNETKNTELAQKAMLSLVISRVFETQYANKVSDKEVEKAYKQT 95

Query: 221 KDNY------------RAPEYKRISYILFDVHEKEKKIEISNDEL-QAEYEKNKEKYFSP 267
            D Y              PE  +    L  + E   K +  N+ + + +Y +  + Y   
Sbjct: 96  ADQYGTSFKTVLAQSGLTPETYKKQIRLTKLVEYAVKEQAKNETISKKDYRQAYDAYTP- 154

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
              T E + F  +++A  A +++K  G  F  +A+E+  +    +  +F        +  
Sbjct: 155 -TMTAEIMQFEKEEDAKAALEAVKAEGADFAAIAKEKTIAADKKTTYTFDSGETILPAEV 213

Query: 327 DSIFSLAKKGDFT------PVIHGSFGYVIA 351
               S  K+G+ +              Y I 
Sbjct: 214 VRAASGLKEGNRSEIITALDPATSKRTYHII 244


>gi|126728790|ref|ZP_01744605.1| PPIC-type PPIASE domain [Sagittula stellata E-37]
 gi|126710720|gb|EBA09771.1| PPIC-type PPIASE domain [Sagittula stellata E-37]
          Length = 412

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 18/143 (12%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           S  V V  Q +           +   + Q +    +        L+K   + L+      
Sbjct: 33  SPAVIVNEQVITGYELE-----QRKRMLQVMRAPGD--------LNKVAREQLIDDRLRL 79

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q   D G++     +         F  +    + + F   LA+ G++E+ Y D     LS
Sbjct: 80  QAARDAGIQPSPEELLD---GMEEFASRA-SLTREQFTQALAQAGVDEETYRDFVRAGLS 135

Query: 161 RTDVVGM-FVGGMRPSNLLLDQA 182
              +V   F G    S   +D+A
Sbjct: 136 WRMLVQQRFAGRANVSEDEVDRA 158


>gi|302509338|ref|XP_003016629.1| hypothetical protein ARB_04920 [Arthroderma benhamiae CBS 112371]
 gi|291180199|gb|EFE35984.1| hypothetical protein ARB_04920 [Arthroderma benhamiae CBS 112371]
          Length = 193

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 35/120 (29%), Gaps = 27/120 (22%)

Query: 258 EKNKEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-- 294
           +++              L+                   ++ +A E      Q ++ G+  
Sbjct: 58  DRHGASGQGEGKIRASHLLIKHRESRRPSSWRESEITRSKDDAIEILRGHKQRIEAGEAS 117

Query: 295 --KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                    +   +     LG F +  +       + F+L K G+ + ++  + G  +  
Sbjct: 118 LGDIATSESDCSSARKRGDLGFFGRGEM-QAEFEQAAFAL-KVGEVSDIVETASGVHLIE 175


>gi|229546514|ref|ZP_04435239.1| peptidylprolyl isomerase [Enterococcus faecalis TX1322]
 gi|307289957|ref|ZP_07569886.1| putative foldase protein PrsA [Enterococcus faecalis TX0411]
 gi|229308414|gb|EEN74401.1| peptidylprolyl isomerase [Enterococcus faecalis TX1322]
 gi|306499023|gb|EFM68512.1| putative foldase protein PrsA [Enterococcus faecalis TX0411]
 gi|323479869|gb|ADX79308.1| Peptidyl-prolyl cis-trans isomerase PPIASE domain protein
           [Enterococcus faecalis 62]
          Length = 342

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 73/246 (29%), Gaps = 32/246 (13%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I   ++ +   +  +        V          D+      +            +    
Sbjct: 36  ITVDDFYNQIKEQSTSQQAFSQMVIYKVFEEKYGDKVTDKDIQK-----------NFDEA 84

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV--HEKEKKIEISNDELQAEYEKNKEK 263
            +   A   ++ +  K      +  +             +  ++I++++L+  +      
Sbjct: 85  KEQVEAQGGKFSDALKQAGLTEKTFKKQLKQRAAYDAGLKAHLKITDEDLKTAWASFHP- 143

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEY 319
                    + +   ++ +A    + +  G  F ++A+E+    +    G      S+  
Sbjct: 144 -----EVEAQIIQVASEDDAKAVKKEITDGGDFTKIAKEKSTDAATKKDGGKIKFDSQAT 198

Query: 320 IPDVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDI 371
                + ++ F L K G+ +              Y +  ++  K        +++  K I
Sbjct: 199 TIPAEVKEAAFKL-KDGEVSEPIAATNMQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKI 257

Query: 372 ANQMRI 377
           A + ++
Sbjct: 258 AEETKL 263


>gi|332829602|gb|EGK02248.1| hypothetical protein HMPREF9455_01518 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 461

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/319 (8%), Positives = 81/319 (25%), Gaps = 84/319 (26%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           VG + +  S    + +  L    +  G                I + L          + 
Sbjct: 35  VGDEAILKSDVEKARQMMLSRGERIEGDPYC-----------LIPEQLAVQKLFLDQAKI 83

Query: 106 IGLEADHGRVWGEI--ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
             ++     V   +    + +     +K   + ++        +  +  + + + +    
Sbjct: 84  DSIDVPTAEVSRGVTRQENMVIANLGSKEKVEEYLQA------SMSQLREEWREEIRNGY 137

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +V                               +  + V   +  + + + +++ +   +
Sbjct: 138 LVS-----------------------------EVKKKLVGKKSSLTPSEVRRYYAQLPQD 168

Query: 224 YR--APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
                P    +  I  +      +I+   + L+                           
Sbjct: 169 SLPYIPTTVEVQIITNEPIVPLAEIDKVKERLRDF------------------------- 203

Query: 282 EADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
                   +  G+ F  LA    E G + +    G   +        ++  FSL      
Sbjct: 204 -----TNRVNAGESFSTLAIMYSEDGSAQNGGETGFSGRASWV-TEFSNMAFSLNDPKKV 257

Query: 339 TPVIHGSFGYVIAHVSNIK 357
           + ++   +G+ I  +   +
Sbjct: 258 SNIVETEYGFHIIQLIERR 276


>gi|71904380|ref|YP_281183.1| foldase protein PrsA [Streptococcus pyogenes MGAS6180]
 gi|209560163|ref|YP_002286635.1| foldase protein PrsA [Streptococcus pyogenes NZ131]
 gi|71803475|gb|AAX72828.1| protein export protein prsA precursor [Streptococcus pyogenes
           MGAS6180]
 gi|209541364|gb|ACI61940.1| Peptidylproline cis-trans-isomerase [Streptococcus pyogenes NZ131]
          Length = 316

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 22/211 (10%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T +V M    +  S+   +       +   +  ++            S+  + + +++ 
Sbjct: 36  NTKLVSMKGDTITVSDFYNETKNTELAQKAMLSLVISRVFETQYANKVSDKEVEKAYKQT 95

Query: 221 KDNY------------RAPEYKRISYILFDVHEKEKKIEISNDEL-QAEYEKNKEKYFSP 267
            D Y              PE  +    L  + E   K +  N+ + + +Y +  + Y   
Sbjct: 96  ADQYGTSFKTVLAQSGLTPETYKKQIRLTKLVEYAVKEQAKNETISKKDYRQAYDAYTP- 154

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
              T E + F  +++A  A +++K  G  F  +A+E+  +    +  +F        +  
Sbjct: 155 -TMTAEIMQFEKEEDAKAALEAVKAEGADFAAIAKEKTIAADKKTTYTFDSGETTLPAEV 213

Query: 327 DSIFSLAKKGDFT------PVIHGSFGYVIA 351
               S  K+G+ +              Y I 
Sbjct: 214 VRAASGLKEGNRSEIITALDPATSKRTYHII 244


>gi|254411881|ref|ZP_05025657.1| PPIC-type PPIASE domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196181603|gb|EDX76591.1| PPIC-type PPIASE domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 245

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 10/128 (7%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDI 310
           E++  + +N+  Y   E   + QL+  ++  A E F  +++G+  F + A          
Sbjct: 106 EVEKFFTQNRLDY---EQILLYQLILASEPLARELFYEIEEGEISFYEAAHLYDIDPERK 162

Query: 311 SLGSFSKE---YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
               +  +   +     +A ++F+ A  G+    I    GY +       P+      E 
Sbjct: 163 RRCGYEGKVYRWRLKPEMASAVFA-APIGEVVGPIKTDLGYHLLRAEEFIPAQLTP--ER 219

Query: 368 KKDIANQM 375
            ++I N++
Sbjct: 220 SQEILNRL 227


>gi|322389168|ref|ZP_08062729.1| peptidyl-prolyl cis-trans isomerase [Streptococcus parasanguinis
           ATCC 903]
 gi|321144073|gb|EFX39490.1| peptidyl-prolyl cis-trans isomerase [Streptococcus parasanguinis
           ATCC 903]
          Length = 314

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 72/232 (31%), Gaps = 44/232 (18%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFV--------GGMRPSNLLLDQAKRFYFENRSVDYIVL 197
           I   ++ +          V+             G + S+  +D+      +     +   
Sbjct: 37  ITVSDFYNEIKTNQGAQQVLFQMTINKVFEKEYGSKVSDKEVDKELAKQKKQLGNRF--- 93

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                 A    +     +               R + +L     +  K +I   + +A +
Sbjct: 94  --DAYLAQQGLTEETAKK-------------QIRSNMLLEYAVNQAAKKDIKESDYKAAF 138

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFS 316
           E       +PE+ T + +   ++ +A E  ++ K  G  F Q+A++     +    G   
Sbjct: 139 ESY-----TPEV-TAQIIKLDSEDKAKEVLEAAKAEGADFAQIAKDNSTDTTTKDKGGEV 192

Query: 317 KEYIPDVSLA----DSIFSLAKKGDFTPVIHGSFG------YVIAHVSNIKP 358
           K       +     ++ F L + G  + VI  S G      Y I  ++    
Sbjct: 193 KFDSGTADIPSQVKEAAFKLDENG-ISDVITVSAGQNYSASYYIVKLNKKTE 243


>gi|45657364|ref|YP_001450.1| hypothetical protein LIC11489 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600603|gb|AAS70087.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 444

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 90/284 (31%), Gaps = 41/284 (14%)

Query: 3   EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF---SVSGSSTVVSVGRQKVPFSSFINS 59
           + I +A   +   I +  L V FL      + F   S   +     +G   +P   +  +
Sbjct: 43  DKIIRAVVGFFLFILVGGLIVTFLPGDAEKSFFDVISGKSNVNAGKIGDYSIPMDYYQAA 102

Query: 60  WKQELGMISQKIGFVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            ++            +    A     L       + S    +Q  +  G  A    +  E
Sbjct: 103 KRECYFQYR-----NIAPSLAEDPSTLQSCAFQTIRSLVVTEQIAKATGFSASETGIREE 157

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           ++               ++   +   G ++ E        +    ++             
Sbjct: 158 LSDEA----------RRIYRESVNGAGYSDDEVR---KPEVIYKQILNS----------- 193

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                R   +N S+ Y  L N  +      ++  +    E     +R    + +SY    
Sbjct: 194 APMQYRIDRKNASIIYDTLLNSDLKK----TDGEIAVQKESTSARFRL---RIVSYTDDQ 246

Query: 239 VHEKEKK-IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           + +  +K   IS + L+A+YE  K++   P+    +++ F  +K
Sbjct: 247 LSKLAEKEAPISEEILRAKYENEKKEGKLPKNTDGKEISFEERK 290


>gi|322374457|ref|ZP_08048971.1| foldase protein PrsA [Streptococcus sp. C300]
 gi|321279957|gb|EFX56996.1| foldase protein PrsA [Streptococcus sp. C300]
          Length = 313

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 85/275 (30%), Gaps = 37/275 (13%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I E ++ +      +   V+            L    ++ + +    +    +     A 
Sbjct: 38  ITEHQFFEEVKNNPTAQQVL------------LNMTIQKVFEQQYGSEVTDKDVDDAVA- 84

Query: 206 ADPSNAVLTQWFEKY----KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
                    ++ + Y    +     PE ++       + E   K    ++     Y+K  
Sbjct: 85  -----EEQKKYGDSYNSVLQRAGMTPETRKAQIRTSKLVELAVKKAAESELTDEAYQKAF 139

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLG----SFS 316
           E Y      T + +   N+ +A E  +  K  G  F QLA++          G      S
Sbjct: 140 ESYTPD--VTAQIIRLDNEDKAKEVLEKAKAEGADFAQLAKDNSNDDKTKENGGEITFDS 197

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIH------GSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                   +  + F+L   G  + VI        S  + I  V+      + + ++ K+ 
Sbjct: 198 ASTELPEQVKKAAFALDVNG-VSDVITATGTQAYSSQFYIIKVTKKTE-KSSNIEDYKEK 255

Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           +   +   K ++         +E  A    + + +
Sbjct: 256 LKTIILTQKQNDSAFVQGVIGKELQAANIKVKDQA 290


>gi|313227202|emb|CBY22349.1| unnamed protein product [Oikopleura dioica]
          Length = 158

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 47/144 (32%), Gaps = 39/144 (27%)

Query: 245 KIEISNDELQAEYEK---NKEKYFSP---------EIRTVEQLVFPNQKE---------- 282
             ++S    QA Y     N+ ++  P         E      L+  ++            
Sbjct: 13  TAKVSRSSGQAYYVNRFTNESQWEKPTKPAQKPSSEKVQASHLLVKHRDSRRPASWRNNN 72

Query: 283 ----ADEAFQSLKK-------GK-KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLAD 327
                +EA + L K       G+  F  LA E     S      LG F +  +      +
Sbjct: 73  ITISKEEALEQLNKYMVQIESGERSFADLASEVSDCSSAKRCGDLGPFGRGQM-QRPFEE 131

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L K G+ + V+    G  I 
Sbjct: 132 ATFAL-KVGEMSGVVDTDSGVHII 154


>gi|24215168|ref|NP_712649.1| hypothetical protein LA_2468 [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24196240|gb|AAN49667.1|AE011414_9 hypothetical protein LA_2468 [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 444

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 90/284 (31%), Gaps = 41/284 (14%)

Query: 3   EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF---SVSGSSTVVSVGRQKVPFSSFINS 59
           + I +A   +   I +  L + FL      + F   S   +     +G   +P   +  +
Sbjct: 43  DKIIRAVVGFFLFILVGGLIITFLPGDAEKSFFDVISGKSNVNAGKIGDYSIPMDYYQAA 102

Query: 60  WKQELGMISQKIGFVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            ++            +    A     L       + S    +Q  +  G  A    +  E
Sbjct: 103 KRECYFQYR-----NIAPSLAEDPSTLQSCAFQTIRSLVVTEQIAKATGFSASETGIREE 157

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
           ++               ++   +   G ++ E        +    ++             
Sbjct: 158 LSDEA----------RRIYRESVNGAGYSDDEVR---KPEVIYKQILNS----------- 193

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                R   +N S+ Y  L N  +      ++  +    E     +R    + +SY    
Sbjct: 194 APMQYRIDRKNASIIYDTLLNSDLKK----TDGEIAVQKESTSARFRL---RIVSYTDDQ 246

Query: 239 VHEKEKK-IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           + +  +K   IS + L+A+YE  K++   P+    +++ F  +K
Sbjct: 247 LSKLAEKEAPISEEILRAKYENEKKEGKLPKNTDGKEISFEERK 290


>gi|144897576|emb|CAM74440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 421

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 52/177 (29%), Gaps = 18/177 (10%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  +  + + +       +  L      +   +   +     +  ++L  ++     
Sbjct: 28  DRVVAVINDEAISYRDVEARVRLAL------VSSNIPDSQEARQRVVPQVLRKMIDERLQ 81

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  + + +   +  V G IA         ++      +S LAR+G++     +     L
Sbjct: 82  LQEAQRLSIVLSNADVDGAIATIEQ----QSRMPRGALLSNLARQGVDPARVREQIRADL 137

Query: 160 SRTDVVGMFVGGM--RPSNLLLDQAKRFYFEN--RSVDYIVLNNRHVPAIADPSNAV 212
           +   +V   +G         + D+ +        R V    +       +  P    
Sbjct: 138 TWMRLVTRVIGPQIRIGEEEVNDRLQSLADRQGLREVRAAEI----FLPVESPDQEA 190



 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 29/216 (13%)

Query: 155 YTKML-SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
             KM+  R  +       +  SN  +D A     +   +    L +       DP     
Sbjct: 72  LRKMIDERLQLQEAQRLSIVLSNADVDGAIATIEQQSRMPRGALLSNLARQGVDP----- 126

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
                      R      ++++         +I I  +E+    +   ++    E+R  E
Sbjct: 127 --------ARVREQIRADLTWMRLVTRVIGPQIRIGEEEVNDRLQSLADRQGLREVRAAE 178

Query: 274 QLVFPNQKEADEAFQS---------LKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIP 321
            +  P +    EA            L++G  F  LA +  +S    +   LG  S+  + 
Sbjct: 179 -IFLPVESPDQEAEARAMGERLQEGLRQGTSFQSLARQFSRSPTSSNGGLLGWVSQGMVD 237

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           D     ++     +G  + ++  S G+ +  V   +
Sbjct: 238 DEVA--AVLETLDRGQTSQLVRTSTGFYLLQVLETR 271


>gi|197302599|ref|ZP_03167654.1| hypothetical protein RUMLAC_01328 [Ruminococcus lactaris ATCC
           29176]
 gi|197298497|gb|EDY33042.1| hypothetical protein RUMLAC_01328 [Ruminococcus lactaris ATCC
           29176]
          Length = 368

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 55/385 (14%), Positives = 106/385 (27%), Gaps = 90/385 (23%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP--FSSFINSWKQ-----ELG 65
           VA + L        + G      S+   +TV +VG +K+    ++F    +Q        
Sbjct: 8   VAVLTLAGAIAAMSVTGCG----SIKEDATVATVGEEKITLGVANFYARLQQGQYETYYA 63

Query: 66  MISQKIGFVVNSERA-----RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +    G  + S+ A             I+++L +   L Q   +  +            
Sbjct: 64  GMMGTTGEAMWSQDASDGKDYEEQTKDNIMESLENLYLLSQHASEYNVSLSDDEKK---- 119

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
                     +F  D                                    +  S   ++
Sbjct: 120 ---AIKDAAEQFGKDN----------------------------TDQVKDVVSGSTDTIE 148

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +          +D  + +   V A     +              ++ +Y   SY      
Sbjct: 149 KLLELLTIQNKMDTAIKDTETVTADDITDDEAAQ----------KSMQYVLFSYT--TKD 196

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           +      +S+DE +                         +  A     S+K G  F   A
Sbjct: 197 DSGNSTTLSDDEKETL-----------------------KTTAQNFVDSVKGGADFGTAA 233

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
            E G      +    S+   P+  L  +  +L  +GD T VI    G  +A ++++    
Sbjct: 234 TEAGVEAQTAT--FDSESTSPNSDLIAAADALVNEGDVTEVIETDNGLYVAKLTSLLDRE 291

Query: 361 TVSFQEVKKDIANQMRITKASEKVK 385
                  K  I  + +  K  E +K
Sbjct: 292 AT--DSKKASIVTERKQEKYDEVLK 314


>gi|158429497|pdb|2PV1|A Chain A, Crystallographic Structure Of Sura First Peptidyl-Prolyl
           Isomerase Domain Complexed With Peptide Weyipnv
 gi|158429499|pdb|2PV2|A Chain A, Crystallographic Structure Of Sura First Peptidyl-Prolyl
           Isomerase Domain Complexed With Peptide Nftlkfwdifrk
 gi|158429500|pdb|2PV2|B Chain B, Crystallographic Structure Of Sura First Peptidyl-Prolyl
           Isomerase Domain Complexed With Peptide Nftlkfwdifrk
 gi|158429501|pdb|2PV2|C Chain C, Crystallographic Structure Of Sura First Peptidyl-Prolyl
           Isomerase Domain Complexed With Peptide Nftlkfwdifrk
 gi|158429502|pdb|2PV2|D Chain D, Crystallographic Structure Of Sura First Peptidyl-Prolyl
           Isomerase Domain Complexed With Peptide Nftlkfwdifrk
          Length = 103

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKG 336
             + +A       + G  F +LA         ++ G      I +   +     S AKKG
Sbjct: 23  EAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKG 82

Query: 337 DFTPVIHGSFGYVIAHVSNIK 357
           D    I    G+ I  V++++
Sbjct: 83  DIVGPIRSGVGFHILKVNDLR 103


>gi|213613182|ref|ZP_03371008.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 240

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 5/169 (2%)

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKG 336
             Q++A+   +  + G  F +LA         +  G      I +   +     S AKKG
Sbjct: 6   DAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKG 65

Query: 337 DFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEF 394
           D    I    G+ I  V++++  S ++S  EV    I  +       ++ +   + +   
Sbjct: 66  DIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQARLKLEEIAAD 125

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
           +  G +    +   K  S D    +  G           P     L ++
Sbjct: 126 IKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 172


>gi|217077588|ref|YP_002335306.1| hypothetical protein THA_1524 [Thermosipho africanus TCF52B]
 gi|217037443|gb|ACJ75965.1| conserved hypothetical protein [Thermosipho africanus TCF52B]
          Length = 542

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/402 (12%), Positives = 121/402 (30%), Gaps = 106/402 (26%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS------STVV--SVGRQKVPFS---- 54
           + +   +     +      ++W +S  + S  GS       +V   +     +       
Sbjct: 6   EKAHGAIIWTIAIAFVAGIVVWSISSYVSSRKGSVKYNLEDSVAYLTKDGTALSEEYWIF 65

Query: 55  --SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
                +S+ + L                    L   IL++L+   T+  + +   +    
Sbjct: 66  PWEVEDSYSKALSYYQ----ISDVDPVFEEPMLKTSILNDLIETKTILYYAQVNKISPTK 121

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             +  E+ +        +   ++  ++ + ++  + + Y                     
Sbjct: 122 DEINQELDKQ-----VADIEKNEQLLNYIKQKYGSVENY--------------------- 155

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
                      +   E   V Y+ +  +    IA  S+  +  ++ + +           
Sbjct: 156 -----------KKTIEPEVVKYLTI-AKVRDTIASVSDDEMKSYYSENR----------- 192

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-AFQSLK 291
                             ++L  +Y++    + S          F +Q  A++   +++ 
Sbjct: 193 ------------------EDLMNKYDQANVDFVS----------FSSQASANDFINEAMN 224

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            G  F Q A     S+ +     F +  I D    DSIF           I     + + 
Sbjct: 225 TG--FYQAATNMSLSVQNYD--GFKRGII-DKKFEDSIFGSTNT--IVGPIPLGSNFFVF 277

Query: 352 HVSNIKPSFT---VSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +V ++K   T    +  +  +D+ NQ++  K  + + E  K 
Sbjct: 278 NVKDVKTVDTFEKFTLSQGYQDVLNQLKSDKFRKAIDEFKKN 319


>gi|296271661|ref|YP_003654292.1| SurA domain-containing protein [Arcobacter nitrofigilis DSM 7299]
 gi|296095836|gb|ADG91786.1| SurA domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 283

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/380 (13%), Positives = 101/380 (26%), Gaps = 114/380 (30%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
            AK  L  L   F               +  ++V  + +  S                  
Sbjct: 9   FAKRVLFTLMATFTFSNAQMI------DALALTVNDEPITTSDINQ-------------- 48

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                + A +       +  L+      Q +E   +  D   V   + +        N  
Sbjct: 49  -----KMAETHLKKADAVSELIDQILYKQELEKQNITVDIFEVNDYLEKLAA----SNGM 99

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
               F S L ++  N  E+     K L +  +    + G                     
Sbjct: 100 DLYTFKSILRQKNKNFDEFEAQTKKELMKKKLAAKLIRG--------------------- 138

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                       I   +   L  +++  K  +      +I+   +    K   I +S + 
Sbjct: 139 -----------NIPVATEEDLKIYYDNNKSMFTT--ASKINVTQYASKNKRSLIIMSQNP 185

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           +    +  K+ +   + +   QL F                                   
Sbjct: 186 MALLNDVVKKDFTLEQDKLNPQLKF----------------------------------- 210

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                           + +  K G FTP+      +V+  V +     T+ F EVK+ I 
Sbjct: 211 ----------------LLNDTKDGSFTPIFTADRTFVMFFVKSKSGVTTLKFDEVKEKIF 254

Query: 373 NQMRITKASEKVKEDYKRLE 392
           N +   +  + +KE +++L+
Sbjct: 255 NALMGEREQKFLKEYFEKLK 274


>gi|332362621|gb|EGJ40419.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis SK49]
          Length = 341

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 86/240 (35%), Gaps = 24/240 (10%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +V M    +  +            +   +   +          + ++  + + F+K K  
Sbjct: 29  IVTMKGNTITVNEFYDQVKNNGAAQQVLLQMTIKEVFGEKYGKNVTDKEVNEAFDKMKTA 88

Query: 224 YRAPEYKRISYILFDVHEKEKKI-----------EISNDELQAEYEKNKEKYFSPEIRTV 272
           Y     + ++         + +I           + +  EL  E  K   + ++PE+ T 
Sbjct: 89  YGTSFAQVLAQSGLTEETYKDQIRTNKLVEYAVKKAAEKELTDENYKAAFENYTPEV-TA 147

Query: 273 EQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLA 326
           + +   ++ +A E  +  K  G  F Q+A+E     +    G   K       +PD ++ 
Sbjct: 148 QIIKIDSEDKAKEVLEKTKAEGADFSQIAKENSTDTATKDKGGEIKFDSSSTDVPD-AVK 206

Query: 327 DSIFSLAKK--GDFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            + F+L +    D   V +  +   Y I  +   K   + ++++ K ++   +   K ++
Sbjct: 207 KAAFALEENSVSDLVTVQNSQYSASYYIVKLVK-KSEKSSNWKDYKDNLKKIIVAQKEND 265


>gi|83945293|ref|ZP_00957642.1| peptidyl-prolyl cis-trans isomerase family protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851463|gb|EAP89319.1| peptidyl-prolyl cis-trans isomerase family protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 411

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 84/243 (34%), Gaps = 27/243 (11%)

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D     ++  G+   E      +ML+R  +    + G+    L L QA  F  E    +
Sbjct: 45  RDRMRLIISSAGVQPTE------EMLAR--IQDQSIRGLVDETLQLQQAAEFDLEVEEAE 96

Query: 194 ----YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
                  +  R    + +  + +     +      R      I++ +        +I IS
Sbjct: 97  VDDAIADIATRSGATVQEVEDDLAASGIDINT--LRQQVKAEIAWQILVSGRYRSRIRIS 154

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE--------AFQSLKKGKKFIQLAE 301
           + +++   ++  +    P+ R  E  V    +  +E         +  L++G  F  +A+
Sbjct: 155 DQQIETALDRYIQSASQPQYRLGEIFVEITPQGGEERAVGIIQTIYDQLRQGAPFQAVAQ 214

Query: 302 EQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           +   + S       G      I +  +A+++  + + G  +  I    G+ I  + + + 
Sbjct: 215 QFSDAASASAGGDTGYLPLSGI-NAQVAEAVTQM-EPGQISNPIRVPGGFQIVALIDRRD 272

Query: 359 SFT 361
              
Sbjct: 273 GQV 275


>gi|294827708|ref|NP_710856.2| hypothetical protein LA_0675 [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293385551|gb|AAN47874.2| hypothetical protein LA_0675 [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 344

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/376 (12%), Positives = 104/376 (27%), Gaps = 84/376 (22%)

Query: 22  FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
              FL + L     + S +  + +VG   +      ++  ++   + + +          
Sbjct: 16  MFVFLFF-LRSTHAAESLNRVIATVGTVSISELDLDDA-TEKYNRLQKHL-----KHEDY 68

Query: 82  SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
                 +I+D L+  A +D   E+  ++ +  RV  EI +           +   F   +
Sbjct: 69  RKSFRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRME---VMGITNRKQFEKTM 125

Query: 142 -AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
               G+  + ++      + +  ++ + +                               
Sbjct: 126 ETSSGMPFELWVTELPYQIKKGQLLQLKI------------------------------- 154

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
              A+  P+   +  W+ + KD         I Y +  +  +   I+          E+N
Sbjct: 155 ---AVPPPNEQEIRSWYNQNKDK----VGFEIRYRIISIAPENDSIQ----------EEN 197

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-DISLGSFSKEY 319
           +      EIR                   L     F  +A       +     G      
Sbjct: 198 RLYKEVSEIRKS----------------ILADPSSFALIAGSPRNDPALRARRGMVEWIS 241

Query: 320 IPD----VSLADSIFSLAKKGDFTPVIHGS-FGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
             D      +  +I +    G  + V       Y I  +   +P      + ++  I N 
Sbjct: 242 SFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEGKRP---TPMENLRGGIQNI 298

Query: 375 MRITKASEKVKEDYKR 390
           +   K  +      K 
Sbjct: 299 LYRDKEEDTFHRWLKE 314


>gi|319947343|ref|ZP_08021576.1| peptidyl-prolyl cis-trans isomerase [Streptococcus australis ATCC
           700641]
 gi|319746585|gb|EFV98845.1| peptidyl-prolyl cis-trans isomerase [Streptococcus australis ATCC
           700641]
          Length = 313

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 70/199 (35%), Gaps = 17/199 (8%)

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
            ++++ V    D     L + F  Y        E  +       + E      IS +   
Sbjct: 73  KVSDKDVEKKVDEQKKQLGEAFNSYLTQQGLTEETNKQQIRSNLLLEYAVDQAISKELTD 132

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLG 313
             Y+K  E Y +PEI T   +   ++++A+E   S+K  G  F Q+A+E     S    G
Sbjct: 133 EAYKKAFETY-TPEI-TANVIKLDSEEKANEVLASVKAEGADFAQIAKENSTDASTKEKG 190

Query: 314 ----SFSKEYIPDVSLADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSFT-- 361
                 S        + ++   L   G  + V         +  Y I  V+  +   +  
Sbjct: 191 GEIKFDSGTTTVPTRVKEAASKLDVNG-ISDVVIDPASQKSAGAYYIVKVTKKEEKGSDW 249

Query: 362 VSFQEVKKDIANQMRITKA 380
             +++  K+I    R   A
Sbjct: 250 KKYEKRLKEILTAERKNDA 268


>gi|296416343|ref|XP_002837840.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633723|emb|CAZ82031.1| unnamed protein product [Tuber melanosporum]
          Length = 147

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSF 315
           +   +K        V  ++     + +   + L  G+KF  +A E  +  +    SLG  
Sbjct: 36  DSKSDKLKPANSINVRHILCEKHSKMETVLERLANGEKFDAVARELSEDKARQGGSLGWK 95

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVI-----HGSFGYV 349
           ++  +   +  D+ ++LA      PV        S G+V
Sbjct: 96  TRGSLLK-AFEDAAYALAVSTVDRPVYTNPAVKTSEGWV 133


>gi|238917148|ref|YP_002930665.1| hypothetical protein EUBELI_01220 [Eubacterium eligens ATCC 27750]
 gi|238872508|gb|ACR72218.1| Hypothetical protein EUBELI_01220 [Eubacterium eligens ATCC 27750]
          Length = 332

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 14/135 (10%)

Query: 265 FSPEIRTVEQ--LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
            + E R ++   +V  +++E ++A+  +  G  F  +A+E     +D       K    D
Sbjct: 176 SADEARVIDIQYIVSDSEEEINKAYNLVNSGSSFFAVAKE---CNADGEYEYELKRGEMD 232

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-ANQMRITKAS 381
            +   + F LA  G+ + V+     Y I   ++          + K ++    +   +  
Sbjct: 233 STFEKAAFDLA-TGEMSKVVKAEGRYYIIRCTSDN-------DKAKTEVNKTAILEKRKL 284

Query: 382 EKVKEDYKRLEEFLA 396
           EK   D+++ E  L 
Sbjct: 285 EKFNADFEKYEAGLY 299


>gi|12963653|ref|NP_075860.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Mus
           musculus]
 gi|20139259|sp|Q9QUR7|PIN1_MOUSE RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1; AltName: Full=Peptidyl-prolyl cis-trans isomerase
           Pin1; Short=PPIase Pin1
 gi|6468200|dbj|BAA87037.1| PIN1 [Mus sp.]
 gi|6468202|dbj|BAA87038.1| PIN1 [Mus sp.]
 gi|12832817|dbj|BAB22270.1| unnamed protein product [Mus musculus]
 gi|12833994|dbj|BAB22743.1| unnamed protein product [Mus musculus]
 gi|26343949|dbj|BAC35631.1| unnamed protein product [Mus musculus]
 gi|54887364|gb|AAH38254.1| Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
           [Mus musculus]
 gi|74151907|dbj|BAE29739.1| unnamed protein product [Mus musculus]
 gi|74227721|dbj|BAE35702.1| unnamed protein product [Mus musculus]
 gi|148693178|gb|EDL25125.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1,
           isoform CRA_b [Mus musculus]
          Length = 165

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                   +++EA E      Q +K G+  F  
Sbjct: 48  KNGQGEPAKVRCSHLLVKHSQSRRPSSWRQEKITRSKEEALELINGYIQKIKSGEEDFES 107

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 108 LASQFSDCSSAKARGDLGPFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 161


>gi|291277475|ref|YP_003517247.1| hypothetical protein HMU12700 [Helicobacter mustelae 12198]
 gi|290964669|emb|CBG40524.1| putative periplasmic protein [Helicobacter mustelae 12198]
          Length = 300

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/357 (10%), Positives = 110/357 (30%), Gaps = 112/357 (31%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
            ++V    +       + K++                      ++K +D LV+    +Q 
Sbjct: 47  AITVNGDPITLYQIKQTAKEQKLT-------------------EEKAIDFLVAQKIKEQE 87

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA-REGINEKEYIDHYTKMLSR 161
           I+ + +  D  ++  EI          N      F+S +   + ++E+E+  H  + +  
Sbjct: 88  IKRLKINIDEEKIDNEIQNMAY----RNGMDTKTFLSAIKKEQHMSEREFKKHLKEQMET 143

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
            +++   +     S                                     +  ++ K++
Sbjct: 144 QELMRSVLMSNGNSA--------------------------------GEEEMRDYYNKHR 171

Query: 222 DNYRAP-EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
             +  P E   + Y        E+ I+  +  ++                          
Sbjct: 172 GEFNMPKEVLVVRYSAKSSELLEEAIKHPDTAMRG------------------------- 206

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                  + +++      LA + G+                       +F+  K  +FT 
Sbjct: 207 ------VERVQEKMSLASLAPQIGQ-----------------------VFATTKINEFTT 237

Query: 341 VIH-GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           +++ G+  +V   +        ++FQ+ K  I  ++   +  + +++ ++++++  +
Sbjct: 238 ILNAGNNTFVTFLIKEKIGEEQITFQQAKNFITQKLIEKRQDKILEDHFEKIKQKAS 294


>gi|294946367|ref|XP_002785041.1| peptidyl-prolyl cis-trans isomerase ESS1, putative [Perkinsus
           marinus ATCC 50983]
 gi|239898433|gb|EER16837.1| peptidyl-prolyl cis-trans isomerase ESS1, putative [Perkinsus
           marinus ATCC 50983]
          Length = 110

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKK----FIQLAEEQ---GKSLSDISLGSFSKEYIP 321
            RT  ++   + +   E    ++K K     F ++A+ +   G   +   LG F +  + 
Sbjct: 23  RRTCHEISISHDEALKEIKDMIEKLKADRSIFSEMAKARSDCGSYKNGGDLGFFDRGEM- 81

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFG 347
                D  FSL K G+ +  +    G
Sbjct: 82  QRPFEDVAFSL-KIGELSGPVETDSG 106


>gi|294930458|ref|XP_002779567.1| peptidyl-prolyl cis-trans isomerase ESS1, putative [Perkinsus
           marinus ATCC 50983]
 gi|239888920|gb|EER11362.1| peptidyl-prolyl cis-trans isomerase ESS1, putative [Perkinsus
           marinus ATCC 50983]
          Length = 110

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKK----FIQLAEEQ---GKSLSDISLGSFSKEYIP 321
            RT  ++   + +   E    ++K K     F ++A+ +   G   +   LG F +  + 
Sbjct: 23  RRTCHEISISHDEALKEIKDMIEKLKADKRIFSEMAKARSDCGSYKNGGDLGFFDRGEM- 81

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFG 347
                D  FSL K G+ +  +    G
Sbjct: 82  QRPFEDVAFSL-KIGELSGPVETDSG 106


>gi|270292892|ref|ZP_06199103.1| foldase protein PrsA [Streptococcus sp. M143]
 gi|270278871|gb|EFA24717.1| foldase protein PrsA [Streptococcus sp. M143]
          Length = 313

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 15/169 (8%)

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             PE ++       + E   K    N+     Y+K  E Y      T + +   N+ +A 
Sbjct: 103 MTPETRKAQIRTSKLVELAVKKAAENELTDEAYQKAFEAYTPD--VTAQIIRMDNEDKAK 160

Query: 285 EAFQSLKK-GKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKGDFT 339
           E  +  K  G  F QLA++          G      S        +  + F+L   G  +
Sbjct: 161 EVLEKAKAEGADFAQLAKDNSNDDKTKENGGEITFDSASTELPEQVKKAAFALDVNG-IS 219

Query: 340 PVIH------GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            VI        S  Y I  ++      + +  + K+ +   +   K ++
Sbjct: 220 DVITATGTQAYSTQYYIIKLTKKTE-KSSNLDDYKEKLKTVILTQKQND 267


>gi|157817696|ref|NP_001100171.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Rattus
           norvegicus]
 gi|149020551|gb|EDL78356.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
           (predicted), isoform CRA_a [Rattus norvegicus]
 gi|165970767|gb|AAI58868.1| Peptidylprolyl cis/trans isomerase, NIMA-interacting 1 [Rattus
           norvegicus]
          Length = 165

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                   +++EA E      Q +K G+  F  
Sbjct: 48  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRSKEEALELINGYIQKIKSGEEDFES 107

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 108 LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 161


>gi|313219707|emb|CBY30627.1| unnamed protein product [Oikopleura dioica]
          Length = 158

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 39/144 (27%)

Query: 245 KIEISNDELQAEYEK---NKEKYFSP---------EIRTVEQLVFPNQKE---------- 282
             ++S    QA Y     N+ ++  P         E      L+  ++            
Sbjct: 13  TAKVSRSSGQAYYVNRFTNESQWEKPTKPAQKPSSEKVQASHLLVKHRDSRRPASWRNDN 72

Query: 283 ----ADEAFQSLKK-------GK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
                +EA + L K       G+  F  LA E      +     LG F +  +      +
Sbjct: 73  ITISKEEALEQLNKYMVQIESGERSFADLASEVSDCSSAKRGGDLGPFGRGQM-QRPFEE 131

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L K G+ + V+    G  I 
Sbjct: 132 ATFAL-KVGEMSGVVDTDSGVHII 154


>gi|317157350|ref|XP_001826421.2| peptidyl-prolyl cis-trans isomerase ssp-1 [Aspergillus oryzae
           RIB40]
          Length = 177

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAFQ----SLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  +++EA E  +     +  G+     LA    +   +     LG F +  +      D
Sbjct: 92  ITRSKEEAIEILRGHETRINSGEVSLGDLAMSESDCSSARKKGDLGFFGRGEM-QKEFED 150

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L + G  + ++  + G  +  
Sbjct: 151 AAFAL-QPGQVSGIVDTASGVHLIE 174


>gi|83775165|dbj|BAE65288.1| unnamed protein product [Aspergillus oryzae]
          Length = 262

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAFQ----SLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  +++EA E  +     +  G+     LA    +   +     LG F +  +      D
Sbjct: 177 ITRSKEEAIEILRGHETRINSGEVSLGDLAMSESDCSSARKKGDLGFFGRGEM-QKEFED 235

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L + G  + ++  + G  +  
Sbjct: 236 AAFAL-QPGQVSGIVDTASGVHLIE 259


>gi|74228245|dbj|BAE23993.1| unnamed protein product [Mus musculus]
          Length = 165

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                   +++EA E      Q +K G+  F  
Sbjct: 48  KNGQGEPAKVRCSHLLVKHSQSRRTSSWRQEKITRSKEEALELINGYIQKIKSGEEDFES 107

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 108 LASQFSDCSSAKARGDLGPFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 161


>gi|168052231|ref|XP_001778554.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670008|gb|EDQ56584.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 119

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 13/116 (11%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS----LKKGKK-FIQ 298
           +K+  S+  ++ +  +    +  PE +    +    + +A    Q     ++ GK     
Sbjct: 5   EKVRASHLLVKHQGSRRPASWKDPEGK---IIQKTTRDDAVAQLQQFKSDIESGKSTLAD 61

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      +     LG F +  + +     + F+L K G+ + +I    G  I 
Sbjct: 62  LASKNSDCSSAKRGGDLGWFGRGQMQEP-FEKAAFAL-KVGELSDIIDTESGSHII 115


>gi|119478393|ref|ZP_01618401.1| hypothetical protein GP2143_12169 [marine gamma proteobacterium
           HTCC2143]
 gi|119448602|gb|EAW29848.1| hypothetical protein GP2143_12169 [marine gamma proteobacterium
           HTCC2143]
          Length = 277

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 20/196 (10%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           + +Y   +         +       I+I++D+L     +NK++Y   +  T   + F   
Sbjct: 83  RSDYTIRQRLIRQLEFINEGFIATNIDITDDDLLRYLTENKQRYLVDQKITFTHIFFSAD 142

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVS----------LAD 327
           K   +   S     K  +L   +     +L       +++ Y+   +             
Sbjct: 143 KHQGKELNS--AHLKLNELNRSKVSFHQALPHGDRFLYNRNYVEKNAATIASHFGDDFQQ 200

Query: 328 SIFSL-AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            +FS  A    +       FG  +  V  +  SF  S      DI  Q+      ++++ 
Sbjct: 201 QVFSTGANDMQWQGPFSSPFGSHLVLVIKLTDSFLPSL----DDIRTQVERDAIQDEIRL 256

Query: 387 DYKRLEEFLALGTSMD 402
           + +++   +    ++D
Sbjct: 257 ELEKINRAIIDTYNID 272


>gi|330993926|ref|ZP_08317856.1| Chaperone surA [Gluconacetobacter sp. SXCC-1]
 gi|329758872|gb|EGG75386.1| Chaperone surA [Gluconacetobacter sp. SXCC-1]
          Length = 462

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/384 (13%), Positives = 111/384 (28%), Gaps = 87/384 (22%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           + +V    +             G +   +   ++        L  +I+  L+      Q 
Sbjct: 68  IATVNGAVLTKRDVDT-----RGRLFA-LSSGLDVSDDVMQRLRPQIVRQLIDEKLRMQE 121

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM-LSR 161
           + D  +     ++   IA                      R G+ +    +   +  +S 
Sbjct: 122 MLDRHINVPIQQIADAIAGIE------------------QRNGMPQNALRNKLAEDGVSL 163

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           T ++      +  + +L  +                           + A + Q  E  K
Sbjct: 164 TTLIDQIRVQLGWTQVLRQE--------------------TGERGRITAADIEQRTEALK 203

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
                PEY  IS I   V +       + +EL+                           
Sbjct: 204 REDGKPEYM-ISEIFVPVEDPRH----TENELKFT------------------------- 233

Query: 282 EADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
             +   Q L++G  F  +A +      +L    +G   ++ + D  + D    +   G  
Sbjct: 234 --ETIIQELRQGAPFPVVAAQFSQGQSALDGGMMGWMQEDGL-DPQVVDVARKMP-DGAI 289

Query: 339 TPVIHGSFGYVIAHVSNIKP-----SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           +  I  + GYVIA ++  +      +  +S ++        +    A+++ K        
Sbjct: 290 SNPIRVAGGYVIATIAERRTVGHQMATILSIRQAFFPFDAPLDPENATDQQKATLDAANT 349

Query: 394 FLALGTSMDEISRREKIVSIDLPL 417
           F     S D++  + K +    P 
Sbjct: 350 FSGEARSCDQVEAQNKKLGEKHPT 373


>gi|266620844|ref|ZP_06113779.1| putative PPIC-type PPIASE domain protein [Clostridium hathewayi DSM
           13479]
 gi|288867531|gb|EFC99829.1| putative PPIC-type PPIASE domain protein [Clostridium hathewayi DSM
           13479]
          Length = 324

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 81/220 (36%), Gaps = 19/220 (8%)

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-AVLTQWFEKYKDNYRAPEYKRISYIL 236
           LL QA+ F  E + ++ +    +    I   +    + +  E+Y ++    +   +    
Sbjct: 80  LLGQAREFLQEMKLMNLL---AKDQEIIITSTEKEEIRKLSEEYYESLTEDDIVYMGVKE 136

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR--TVEQLVFPNQKEADEAFQSLKK-G 293
            DV    ++  +SN  +    +    +    E +  T++Q+V  +   A +  + +K+ G
Sbjct: 137 DDVRTMYEEYFLSNKVVSELTKDMNLEISDSEAKVITIDQIVLSDGNTAQDVLEQVKEDG 196

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             F  +A E  +S          +      ++ D+ FSL   G+ +PV+  +  + I   
Sbjct: 197 ADFEAIAREYSESNEIRK--QLGRGE-AKKAVEDAAFSLT-AGEISPVVEDNGTFYIFRC 252

Query: 354 SNIKPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKRLE 392
                     + E         +   +  +   + Y + +
Sbjct: 253 -------VSDYDEDATQARKDNLYQQRKKDAFGQIYNQFK 285


>gi|256854455|ref|ZP_05559819.1| rotamase [Enterococcus faecalis T8]
 gi|256710015|gb|EEU25059.1| rotamase [Enterococcus faecalis T8]
 gi|315030576|gb|EFT42508.1| putative foldase protein PrsA [Enterococcus faecalis TX4000]
          Length = 342

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 76/241 (31%), Gaps = 44/241 (18%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN------ 223
             +   +      ++   +      ++            ++  + + F++ K+       
Sbjct: 34  STITVDDFYNQIKEQSTSQQAFSQMVIYKVFEEKYGDKVTDKDIQKNFDEAKEQVEAQGG 93

Query: 224 ---------------YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
                          ++    +R +Y        +  ++I++++L+  +           
Sbjct: 94  KFSDALKQASLTEKTFKKQLKQRAAY----DAGLKAHLKITDEDLKTAWASFHP------ 143

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVS 324
               + +   ++ +A    + +  G  F ++A+E+    +    G      S+       
Sbjct: 144 EVEAQIIQVASEDDAKAVKKEITDGGDFTKIAKEKSTDAATKKDGGKIKFDSQATTIPAE 203

Query: 325 LADSIFSLAKKGDFTPV------IHGSFGYVIAHVSNIKPSF--TVSFQEVKKDIANQMR 376
           + ++ F L K G+ +              Y +  ++  K        +++  K IA + +
Sbjct: 204 VKEAAFKL-KDGEVSEPIAATNMQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEETK 262

Query: 377 I 377
           +
Sbjct: 263 L 263


>gi|157375095|ref|YP_001473695.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type [Shewanella
           sediminis HAW-EB3]
 gi|157317469|gb|ABV36567.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type [Shewanella
           sediminis HAW-EB3]
          Length = 270

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 49/144 (34%), Gaps = 17/144 (11%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-----------EADEAFQSLKKGKK 295
           +   D+ Q  ++ N+ K+ +  +  V+ ++    K           +A++    L+    
Sbjct: 93  DPKEDDCQRYFDNNRAKFTTMPLMEVDHILLAAAKDDIKGRDDAKTDANDIISRLQDDPS 152

Query: 296 -FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F  LA+      S     SLG  S            +  L  +G  +  +   +G  + 
Sbjct: 153 LFADLAKHHSACPSKETGGSLGQISNGQTV-PEFERQLM-LLPEGLASKPLESRYGLHVV 210

Query: 352 HVSNIKPSFTVSFQEVKKDIANQM 375
           +++       + +  V   +   +
Sbjct: 211 NIARKIEGKPLEYSMVYDKVRGYL 234


>gi|50914454|ref|YP_060426.1| foldase protein PrsA [Streptococcus pyogenes MGAS10394]
 gi|73921822|sp|Q5XBH0|PRSA1_STRP6 RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|50903528|gb|AAT87243.1| Peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes
           MGAS10394]
          Length = 351

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 78/239 (32%), Gaps = 18/239 (7%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T V+ M    +  S+   +       +   ++ ++            S   + + + K 
Sbjct: 29  NTKVISMKGDTISVSDFYNETKNTEVSQKAMLNLVISRVFEAQYGDKVSKKEVEKAYHKT 88

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT--------- 271
            + Y A     ++         +++I  S     A  E  K++  + E +          
Sbjct: 89  AEQYGASFSAALAQSSLTPETFKRQIRSSKLVEHAVKEAAKKELTTQEYKKAYESYTPTM 148

Query: 272 -VEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSL-SDISLGSFSKEYIPDVSLADS 328
            VE +   N++ A    + LK  G  F  +A+E+  +    ++    S        +  +
Sbjct: 149 AVEMITLDNEETAKSVLEELKAEGADFTAIAKEKTTTPEKKVTYKFDSGATNVPTDVVKA 208

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             SL + G                + I  V+  K      +QE KK +   +   K+ +
Sbjct: 209 ASSLNEGGISDVISVLDPTSYQKKFYIVKVTK-KAEKKSDWQEYKKRLKAIIIAEKSKD 266


>gi|139474495|ref|YP_001129211.1| foldase protein PrsA [Streptococcus pyogenes str. Manfredo]
 gi|73921823|sp|Q5X9P6|PRSA2_STRP6 RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|134272742|emb|CAM31015.1| foldase protein PrsA 2 precursor [Streptococcus pyogenes str.
           Manfredo]
          Length = 309

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 22/211 (10%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T +V M    +  S+   +       +   +  ++            S+  + + +++ 
Sbjct: 29  NTKLVSMKGDTITVSDFYNETKNTELAQKAMLSLVISRVFETQYANKVSDKEVEKAYKQT 88

Query: 221 KDNY------------RAPEYKRISYILFDVHEKEKKIEISNDEL-QAEYEKNKEKYFSP 267
            D Y              PE  +    L  + E   K +  N+ + + +Y +  + Y   
Sbjct: 89  ADQYGTSFKTVLAQSGLTPETYKKQIRLTKLVEYAVKEQAKNETISKKDYRQAYDAYTP- 147

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
              T E + F  +++A  A +++K  G  F  +A+E+  +    +  +F        +  
Sbjct: 148 -TMTAEIMQFEKEEDAKAALEAVKAEGADFAAIAKEKTIAADKKTTYTFDSGETTLPAEV 206

Query: 327 DSIFSLAKKGDFT------PVIHGSFGYVIA 351
               S  K+G+ +              Y I 
Sbjct: 207 VRAASGLKEGNRSEIITALDPAISKRTYHII 237


>gi|46445912|ref|YP_007277.1| hypothetical protein pc0278 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399553|emb|CAF23002.1| hypothetical protein pc0278 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 345

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 11/114 (9%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV--SVGRQKVPFSSFIN 58
           ML+  R+  R +   +  VV+ + F  +G   AL + S    V   +V  +++  +    
Sbjct: 1   MLDFFRRYQRYFFF-VITVVIIISFSFFGTYSALGTNSWREQVAFKAVDGKEITRAEVDE 59

Query: 59  -----SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG 107
                +   E   +      V          + K  L+  ++   ++ +  ++ 
Sbjct: 60  MAIFLATDNEDKRL---YNGVWGPNFLNDGVIRKDFLETGLAQELVEAYQNEMK 110


>gi|302383690|ref|YP_003819513.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194318|gb|ADL01890.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 450

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 44/152 (28%), Gaps = 12/152 (7%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V +V  Q +            + M        V         + ++ L  L+     
Sbjct: 62  DGIVATVNDQVITGFDLRQRMLTTIAM------SQVQPTEENIPAIQQQALQGLIEERLQ 115

Query: 100 DQFIEDIG-LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
              I     L+     V  EIAR      ++   +   +V  L   GI  +   +     
Sbjct: 116 AAEIAKFETLKITDAEVDEEIARM----AEEAGTTPQAYVEFLTSGGIRAENLREQLRTE 171

Query: 159 LS-RTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           +  R  V G F    R S   + QA R   E 
Sbjct: 172 IGWRELVGGRFNSRSRVSRAQVQQALRQVTET 203



 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 88/309 (28%), Gaps = 34/309 (11%)

Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
              + +  T  +            +  QA +   E R     +     +       +  +
Sbjct: 77  DLRQRMLTTIAMSQVQPTEENIPAIQQQALQGLIEERLQAAEIAKFETLKITDAEVDEEI 136

Query: 214 TQWFEK-----------------YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
            +  E+                   +N R      I +          +  +S  ++Q  
Sbjct: 137 ARMAEEAGTTPQAYVEFLTSGGIRAENLREQLRTEIGWRELVGGRFNSRSRVSRAQVQQA 196

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQ--------KEADEAFQSLKKGKKFIQLAEEQGKSLS 308
             +  E    P+    E  +   +          A++  Q + +G  F  +A +   + S
Sbjct: 197 LRQVTETASKPQYLVGEIYLEAARVGGQQQAMNGAEQLVQQMVQGAPFQAVARQFSAAPS 256

Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                  G   +  +       +     + G  +  I  S G  I ++ + +     +  
Sbjct: 257 AARGGDAGWLVQGTV--QPELQAALEALEVGQLSRPIPVSGGVYIIYMRDKRSGAATNLV 314

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLAL---GTSMDEISRREKIVSIDLPLVDFAG 422
            +K+ +  ++  T     V     RL+           +   S    ++  DL   D A 
Sbjct: 315 SLKQAMI-ELPETAPPADVAAATTRLQTLRGSLTCDNILQRTSSEAGLLGSDLGEADVAN 373

Query: 423 KDVKGKEVA 431
              + ++VA
Sbjct: 374 LAPQFQQVA 382


>gi|238923933|ref|YP_002937449.1| hypothetical protein EUBREC_1571 [Eubacterium rectale ATCC 33656]
 gi|238875608|gb|ACR75315.1| Hypothetical protein EUBREC_1571 [Eubacterium rectale ATCC 33656]
          Length = 329

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 76/228 (33%), Gaps = 38/228 (16%)

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE---KYKDNYRAP----- 227
           ++ +D+  R Y          +        +  S A   ++++   + +  +        
Sbjct: 87  DVTVDELTRIYCMVSIAKQKKITLTD-KEKSSVSKAA-KEYYDSLNEAEKKFTKADLSDI 144

Query: 228 ----EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
               E+  I+  L++   K    E+S+++ +              +  ++++   +++ A
Sbjct: 145 ESAYEHYAIAQKLYNSLSKGVDTEVSDEDAR--------------VIHIQKIFVKSKESA 190

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           D   Q L   + F  +A   G S    +    +K  +P   +    F L   G+ + +I 
Sbjct: 191 DAVSQKLLSKEDFAAVAS--GSSEDSQTELYAAKGTLP-QEVEAVAFELG-DGETSDMIS 246

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              GY      +             +     +   +  E+  +DY+  
Sbjct: 247 TDDGYYFIKCISKLDREKT------EQNKVTILQKRQQEQFNDDYEHF 288


>gi|167622122|ref|YP_001672416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
 gi|167352144|gb|ABZ74757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
          Length = 271

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 59/160 (36%), Gaps = 22/160 (13%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK---------- 295
            E S ++    ++ N+EK+ +  +  V+ ++ P   E +EA +  ++  +          
Sbjct: 92  QEPSEEDCLRYFQNNREKFVTAPLLEVDHILLPASAEDEEAKEVARQNAENILVQLSQDI 151

Query: 296 --FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGD--FTPVIHGSFGY 348
             F +LA++     S     SLG  S               L + G+      +   +G+
Sbjct: 152 SCFAELAKKYSACPSKETGGSLGQISSGQTV-PEFEQ---QLMQHGEGLVEQPLASRYGF 207

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
            + +++       + +  V   +   +   +AS    + Y
Sbjct: 208 HVVNIARKVDGKQLDYNMVADKVKGYLVH-RASRLAIQAY 246


>gi|325300050|ref|YP_004259967.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           salanitronis DSM 18170]
 gi|324319603|gb|ADY37494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           salanitronis DSM 18170]
          Length = 457

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/393 (10%), Positives = 89/393 (22%), Gaps = 100/393 (25%)

Query: 27  IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD 86
           + G+S           V  VG + +  S   N             G              
Sbjct: 17  LAGVSVFAQDNVIDEVVWVVGDEAILKSDVENERLNAQYENRHFDGDPYC---------- 66

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF-------HGKDNKFSHDVFVS 139
             I + L          E   +      V  ++ +   +         K  ++ +  +  
Sbjct: 67  -VIPEELAVQKLFLHQAELDSIIVSDQEVIQQVEQRISWLTEQIGSREKMEEYYNKTYTQ 125

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
                    +   ++    L+   +    VG                             
Sbjct: 126 I-------REMLRENIRDGLTVQQMQQEIVG----------------------------- 149

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                    + A +  +F K   +     P    +  I  +    E +IE    +L+   
Sbjct: 150 -----DIKLTPAEVRNYFNKLPQDSIPFVPTQVEVQIITQEPKIPETEIERVKAQLREY- 203

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFS 316
                                           + KG+  F  LA    +       G   
Sbjct: 204 -----------------------------ADRVNKGETSFSTLARFYSEDPGTARRGGEG 234

Query: 317 KEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
                       A+ +F+L      + V    FG+ IA +   +          +  +  
Sbjct: 235 GFTGRGELVPEFANVVFNLTDTKKVSKVFETEFGFHIAQLIEKRGDRV----NYRHILLR 290

Query: 374 QMRITKASEKVKEDYKRL-EEFLALGTSMDEIS 405
                KA +        + ++      S D+ +
Sbjct: 291 PKVDQKAIDASLARLDSIADDIRKEKFSFDDAA 323


>gi|261406730|ref|YP_003242971.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
 gi|261283193|gb|ACX65164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
          Length = 363

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/386 (9%), Positives = 118/386 (30%), Gaps = 64/386 (16%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
           F +++ V  L+        +    + + +V   ++  S F  +       I +      +
Sbjct: 19  FFILIVVTILLIAKPAFTQTHHEDAYIATVDGVEIHVSEFQRAIDANRAGIIKYFHEKYD 78

Query: 77  SERARSV-----GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           +  + +      G ++  L+ L+    L+              +  +I +      +   
Sbjct: 79  AAPSAAFWTTPYGGNEIPLE-LIKKKALE------------DSINQKIRQI--LAKEQEV 123

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
                +   +    +      +   +   +   V      +       ++A  +Y    +
Sbjct: 124 LPDISYAGFIQNFNL-----ENQRRQQAIKNHQV------IFGPAQYTEEA--YYEYMMA 170

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN-YRAPEYKRISYILFDVHEKEKKIEISN 250
              + + N  +     PS   L  ++E  K   Y AP   ++  +     +  + ++   
Sbjct: 171 NTALSVKNHLMEHDWKPSEQQLITFYEANKRRLYHAPATVKVRQLSLSFLDANRNVD--- 227

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--LS 308
                                   L    +++ ++A + +  G  F Q  ++  +   ++
Sbjct: 228 ----------------------TLLKTQVKRKIEKAREKISSGISFEQAVKDIKQDDRVT 265

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI--KPSFTVSFQE 366
           +      S  +     +A +   L   G+ + +I  +  + +          S  ++F  
Sbjct: 266 EEVYNLDSYRHNVRSPVAQASADLL-PGEVSEIIEENGRFYLMQCMEKDQLGSKYLAFDG 324

Query: 367 VKKDIANQMRITKASEKVKEDYKRLE 392
           +++ +       +  + V+E     +
Sbjct: 325 IREQVLKDYIDNQYEQYVRERLTDAK 350


>gi|332654009|ref|ZP_08419753.1| putative protein transport protein Sec31 [Ruminococcaceae bacterium
           D16]
 gi|332517095|gb|EGJ46700.1| putative protein transport protein Sec31 [Ruminococcaceae bacterium
           D16]
          Length = 516

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/433 (13%), Positives = 127/433 (29%), Gaps = 97/433 (22%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP----FSSFINSWKQELGMISQKIGF 73
           + VL +  L+W      F     +T V++  +          + N+  + L      +  
Sbjct: 41  IAVLAIALLVW--DSGFF--QKRTTAVTIDGEDFTPAVVQYYYHNAMTETLYYAQMGMNT 96

Query: 74  VVNS-----ERARSVG--------LDKKILDNLVSGATLDQFIEDIGLE---ADHGRVWG 117
             +S     ++ +              + L +L     L+   E  G     A    V  
Sbjct: 97  GFDSSVDPKDQVKDEESGTTWYDYFLDQGLTSLTQVTMLNHAAEKEGYTLPAAGQAYVDA 156

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            I ++                  +   G +      +           G ++       +
Sbjct: 157 SIEQTA---------------QSVRASGYS--SLEHYLRTNF------GSYMTEKLYKEI 193

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY----KRIS 233
           L  Q    Y++    D +             S+  L  ++++ K+N     Y     + S
Sbjct: 194 LTAQTIATYYQQDHQDNLTY-----------SDEELEAYYQENKNNLDTFNYSVFTVQAS 242

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
                  E+   ++++++E QA ++  K +  +                  E    L  G
Sbjct: 243 IETTTTDEEGNSVDLTDEEKQAAFDTAKAQAQATAQ---------------EIQNKLAAG 287

Query: 294 KKFIQLAEEQGKSLSDIS-----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS--- 345
                LAEE    L   +     +GS          L D+     + G+ T V +     
Sbjct: 288 SDAADLAEEYSDKLYSSTVHQSQMGSSFSSSSYAEWLYDAA---RQAGETTIVENDQSDS 344

Query: 346 --FGYVIAHVSNIKPSFTVSFQEVKKDIAN------QMRITKASEKVKEDYKRLEEFLAL 397
             F Y +  + +     + +  +V+  + +        +  +A EK +      +   A 
Sbjct: 345 YVFNYYVVQIDSRTRDESAT-ADVRHVLVSAGSNPTDEQFAQAEEKAQSLLDSWKSGSAD 403

Query: 398 GTSMDEISRREKI 410
             S   ++ +   
Sbjct: 404 EESFAVMAVQNTA 416


>gi|15227956|ref|NP_179395.1| PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1);
           peptidyl-prolyl cis-trans isomerase [Arabidopsis
           thaliana]
 gi|38258260|sp|Q9SL42|PIN1_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase Pin1;
           Short=PPIase Pin1; AltName: Full=PIN1At; AltName:
           Full=Rotamase Pin1
 gi|13430812|gb|AAK26028.1|AF360318_1 putative peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana]
 gi|4406814|gb|AAD20122.1| putative peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana]
 gi|15810551|gb|AAL07163.1| putative peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana]
 gi|15982815|gb|AAL09755.1| At2g18040/T27K22.9 [Arabidopsis thaliana]
 gi|21537274|gb|AAM61615.1| putative peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana]
 gi|330251625|gb|AEC06719.1| Peptidyl-prolyl cis-trans isomerase Pin1 [Arabidopsis thaliana]
          Length = 119

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 50/117 (42%), Gaps = 13/117 (11%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQ 298
            +++ S+  ++ +  + K  +  PE +    ++   ++ A E  +S+++        F +
Sbjct: 5   DQVKASHILIKHQGSRRKASWKDPEGK---IILTTTREAAVEQLKSIREDIVSGKANFEE 61

Query: 299 LA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           +A    +   +     LGSF +  +      ++ ++L K GD + ++    G  I  
Sbjct: 62  VATRVSDCSSAKRGGDLGSFGRGQMQKP-FEEATYAL-KVGDISDIVDTDSGVHIIK 116


>gi|260946952|ref|XP_002617773.1| hypothetical protein CLUG_01232 [Clavispora lusitaniae ATCC 42720]
 gi|238847645|gb|EEQ37109.1| hypothetical protein CLUG_01232 [Clavispora lusitaniae ATCC 42720]
          Length = 174

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 287 FQSLKKGK-KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            + +  G+ K   LA+   +     S   LG F +  +   +  ++ F+L   G+F+ ++
Sbjct: 104 QKRILNGEVKLADLAKTESDCSSHASGGDLGFFGRGQM-QPAFEEAAFAL-NVGEFSDIV 161

Query: 343 HGSFGYVIAH 352
               G  +  
Sbjct: 162 ETDSGVHLIQ 171


>gi|6006449|emb|CAB56780.1| p13 protein [Dictyostelium discoideum]
          Length = 91

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
              LG  +         A+++  L K       +   FG+ +  V + +P    +  +V+
Sbjct: 7   GGDLGW-APATNYVQPFAEAVTKLKKGQLVDKPVQTQFGWHVIQVDDTRPVEFPAMDQVR 65

Query: 369 KDIANQMRITKASEKVKEDYKRLE 392
             +   +R    +   K+  ++ +
Sbjct: 66  PQLEEMLRQQTLANYQKQLREQAK 89


>gi|83755097|gb|ABC46409.1| prolyl cis/trans isomerase [Trypanosoma cruzi]
          Length = 117

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 6/76 (7%)

Query: 281 KEADEAFQSLKKGK-KFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
            E  +  + +  G+  F   A ++   G   S   LG F    +      D+  SL    
Sbjct: 41  AELKQWAKRIADGEITFEDAARQRSDCGSYNSGGDLGFFGPGVMMKP-FEDAARSL-NVE 98

Query: 337 DFTPVIHGSFGYVIAH 352
           + + V+    G  I  
Sbjct: 99  EVSGVVRTESGLHIIK 114


>gi|312597426|pdb|3NRK|A Chain A, The Crystal Structure Of The Leptospiral Hypothetical
           Protein Lic12922
          Length = 325

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/369 (12%), Positives = 103/369 (27%), Gaps = 83/369 (22%)

Query: 29  GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88
           G + A F+ S +  + +VG   +      ++  ++   + + +                +
Sbjct: 3   GSAAAPFTESLNRVIATVGTVSISELDLDDA-TEKYNRLQKHL-----KHEDYRKSFRTR 56

Query: 89  ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL-AREGIN 147
           I+D L+  A +D   E+  ++ +  RV  EI +           +   F   +    G+ 
Sbjct: 57  IIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRME---VMGITNRKQFEKTMETSSGMP 113

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
            + ++      + +  ++ +                                    A+  
Sbjct: 114 FELWVTELPYQIKKGQLLQL----------------------------------KIAVPP 139

Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
           P+   +  W+ + KD         I Y +  +  +   I+          E+N+      
Sbjct: 140 PNEQEIRSWYNQNKDK----VGFEIRYRIISIAPENDSIQ----------EENRLYKEVS 185

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-DISLGSFSKEYIPD---- 322
           EIR                   L     F  +A       +     G        D    
Sbjct: 186 EIRKS----------------ILADPSSFALIAGSPRNDPALRARRGMVEWISSFDLYKY 229

Query: 323 VSLADSIFSLAKKGDFTPVIHGS-FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
             +  +I +    G  + V       Y I  +   +P      + ++  I N +   K  
Sbjct: 230 SKITATIAAPLPNGGVSEVFRDERKRYCILKIEGKRP---TPMENLRGGIQNILYRDKEE 286

Query: 382 EKVKEDYKR 390
           +      K 
Sbjct: 287 DTFHRWLKE 295


>gi|134080181|emb|CAK46161.1| unnamed protein product [Aspergillus niger]
          Length = 177

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 12/91 (13%)

Query: 270 RTVEQLVFPNQKEADEAF----QSLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIP 321
           R  E  +  +++EA E        +  G+     +A    +   +     LG F +  + 
Sbjct: 88  REAE--ITRSKEEAIEILRGHEARINAGEASLGDIAVSESDCSSARKRGDLGFFGRNEM- 144

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                D+ F+L + G  + ++  + G  +  
Sbjct: 145 QKEFEDAAFAL-QPGQVSGIVETASGVHLIE 174


>gi|195049626|ref|XP_001992755.1| GH24043 [Drosophila grimshawi]
 gi|193893596|gb|EDV92462.1| GH24043 [Drosophila grimshawi]
          Length = 165

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQSLKK-----GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA    +  +         F +LA        +     LG F +  +       
Sbjct: 80  ITRTKEEAQMLLEIYRNKIVNREATFEELARSYSDCSSAKRGGDLGKFGRGQM-QAPFEK 138

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L K G  + ++    G  I 
Sbjct: 139 AAFAL-KVGQLSDIVDTDSGLHII 161


>gi|255935639|ref|XP_002558846.1| Pc13g04100 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583466|emb|CAP91479.1| Pc13g04100 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 174

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAF----QSLKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA E      Q ++ G+           +   +     LG F +  +      D
Sbjct: 91  ITRTKEEAIEILKGHEQRIQSGETTLGDLAVAESDCSSARKKGDLGFFGRGEM-QKEFED 149

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F L + G  + VI  + G  +  
Sbjct: 150 AAFGL-QPGQVSSVIETASGVHLIE 173


>gi|255067239|ref|ZP_05319094.1| conserved hypothetical protein [Neisseria sicca ATCC 29256]
 gi|255048607|gb|EET44071.1| conserved hypothetical protein [Neisseria sicca ATCC 29256]
          Length = 252

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 9/158 (5%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           Y        ++  EISN EL   Y++            ++Q+ F   +EA  A + L KG
Sbjct: 98  YAAQYADYLKRTAEISNAELLKFYDQQTRMI------KIQQVSFDTPEEARAAQELLLKG 151

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             F +L +              +++      LAD +  + +       +     + +  +
Sbjct: 152 LSFEELTKRYPNQQPAFEDFVMARQL--RQPLADILGPMNRGEVTHNPVEIENKFFLFKI 209

Query: 354 SNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           S ++       F  ++  +   ++  KA +++ +  + 
Sbjct: 210 SEVQKDPQAPPFDLIRDQLTQLLKEDKAQQQIHQLLRE 247


>gi|303291045|ref|XP_003064809.1| peptidyl-prolyl cis-trans isomerase [Micromonas pusilla CCMP1545]
 gi|226453835|gb|EEH51143.1| peptidyl-prolyl cis-trans isomerase [Micromonas pusilla CCMP1545]
          Length = 280

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 17/113 (15%)

Query: 269 IRTVEQLVFPNQKEA--DEAFQSLKKGKK-FIQLAEEQGKSLSDIS----LGSFSKEYIP 321
              +  ++     EA  DE ++ +  G      LA E  K  S  +    +G   +    
Sbjct: 75  QIKIAHILMDASDEAQLDELYERVVAGADDLATLAAEYSKCPSGKANGGLIGWIGRGQTV 134

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-------FTVSFQEV 367
                D+ F+    G        +FG  +  V + + +             EV
Sbjct: 135 KP-FEDAAFATPIGGVTRA--KTTFGVHVVQVLDQREAPAAVVNVSVEDLAEV 184


>gi|213581234|ref|ZP_03363060.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 203

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 6/145 (4%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENR 190
           + D   SRLA +G+N   Y +   K +  ++V        +      +D   +    +N 
Sbjct: 110 TMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQND 169

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQ 215
           +   + L++  +    +P++  +  
Sbjct: 170 ASTELNLSHILIALPENPTSEQVND 194


>gi|324526000|gb|ADY48617.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Ascaris
           suum]
          Length = 148

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
               ++   +K+ +EA     K   F +LA+E      +     LG F +  +      D
Sbjct: 66  EARNILSGYKKQLEEATDMKAK---FKELAKEFSDCSSAKRGGDLGMFKRRQMQKP-FED 121

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L K G+ + ++    G  + +
Sbjct: 122 AAFAL-KVGELSDIVETDSGLHLIY 145


>gi|316933705|ref|YP_004108687.1| SurA domain [Rhodopseudomonas palustris DX-1]
 gi|315601419|gb|ADU43954.1| SurA domain [Rhodopseudomonas palustris DX-1]
          Length = 308

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 49/169 (28%), Gaps = 20/169 (11%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
            + ++        L          S VV V  + +   +F    + +L  +S        
Sbjct: 9   IIGLVLCCAAAT-LGLGTGPSQAQSIVVMVNGEPIT--NFDIEQRSKLNRMSH------- 58

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
                     +++LD+L+      +  +  G+      +    A          + S   
Sbjct: 59  -----KNESRQQVLDDLIDEKVKIKEGKKYGVNPSDSDIDSSFATMAS----RMRMSTAQ 109

Query: 137 FVSRLAREGINEKEYIDHYTKMLS-RTDVVGMFVGGMRPSNLLLDQAKR 184
             + LA +GI            +   + V G F   ++ S   +    +
Sbjct: 110 MTNMLAAQGIRPDTLKSRIKAEMVWGSLVRGRFKDSLQVSEREIQAQLK 158


>gi|153951819|ref|YP_001397624.1| hypothetical protein JJD26997_0433 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939265|gb|ABS44006.1| conserved hypothetical protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 271

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 65/172 (37%), Gaps = 28/172 (16%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
           + + F  +  +    + + ++  V V ++ +       +                     
Sbjct: 4   ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTM-------------------- 41

Query: 81  RSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           +++ +D+ K L  L++       ++ +G+  +   +   I +        NK + + F +
Sbjct: 42  KALKIDRNKALGILINEKMEISQMKQLGIVVNDLELDDAINKM----LTQNKTTLNAFKA 97

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
            L  +  + +++  ++ K L +  +        + ++   D AK+F+ +N+ 
Sbjct: 98  NLKSKNQSYEQFRANFKKDLEKRKLYEKISNMAK-TDFSDDGAKKFFEQNKD 148



 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 73/179 (40%), Gaps = 19/179 (10%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +E+++ N++    KR  Y          K + S+D  +  +E+NK+K+           +
Sbjct: 106 YEQFRANFKKDLEKRKLYEKIS---NMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYL 162

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             N +      +++K  KK I   +    + S+                   + S    G
Sbjct: 163 SNNPQT----LENIKNTKKIILKPQNASLNTSNTDPRLLG------------LLSQIPVG 206

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
           DF+PV++G  GY +  V +   + T  +++VK ++ N     +    +++ + +L   +
Sbjct: 207 DFSPVLNGKNGYELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKI 265


>gi|240282343|gb|EER45846.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Ajellomyces capsulatus
           H143]
          Length = 196

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAFQ----SLKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  +++EA E  +     ++ G+           +   +     LG F +  +      +
Sbjct: 111 ITRSKEEALEILRGHERRIRAGEATLGDIAMSESDCSSARKKGDLGFFGRGEM-QTEFEE 169

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L + G  + ++  + G  +  
Sbjct: 170 AAFAL-QPGQVSGIVETASGVHLIE 193


>gi|114797858|ref|YP_760847.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Hyphomonas neptunium ATCC 15444]
 gi|114738032|gb|ABI76157.1| PPIC-type PPIASE domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 415

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 48/177 (27%), Gaps = 16/177 (9%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
              V  + + +S      +  L  I           + +   +  + L+ L+        
Sbjct: 38  AAIVNDKPISYSDVRQRARLLLLTIGAS-----QPTQEQVQQITGQALEQLIDEKLQLDR 92

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
           + +  +E D   +   +       G       +V   +L   G+N     +     ++  
Sbjct: 93  VSEFEVEVDPVEIDAAVQNMASEAGVTG----EVLREQLTSSGVNPASLEEQMRAEIAWN 148

Query: 163 DVVGMFVGG--MRPSNLLLDQAKRFY-----FENRSVDYIVLNNRHVPAIADPSNAV 212
            ++    G       N + DQ  R        + R  +  +            + A 
Sbjct: 149 RLMSGLYGNRIRISENQVDDQMSRLRTASQKTQYRIGEIFLYAPDEATKTEALTAAE 205



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 86/229 (37%), Gaps = 20/229 (8%)

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR--HVPAIADPSNAVLTQWFEK 219
             + G  +  +    L LD+   F  E   VD + ++    ++ + A  +  VL +    
Sbjct: 73  QQITGQALEQLIDEKLQLDRVSEFEVE---VDPVEIDAAVQNMASEAGVTGEVLREQLTS 129

Query: 220 ---YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
                 +        I++          +I IS +++  +  + +      + R  E  +
Sbjct: 130 SGVNPASLEEQMRAEIAWNRLMSGLYGNRIRISENQVDDQMSRLRTASQKTQYRIGEIFL 189

Query: 277 FPNQKE--------ADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSL 325
           +   +         A+     L++G  F   A+    +    +   +G  + E I D ++
Sbjct: 190 YAPDEATKTEALTAAESIISQLQQGADFRVAAQRISSAPTAAAGGDMGWVTIEDI-DPTI 248

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
           A+++ + +  G   P+   +  Y+I      +P+  V+  ++K+ +A  
Sbjct: 249 AEAVRNSSGNGLLEPIQTENGIYIILLGGKREPAEPVTRVDLKRLVAAD 297


>gi|322379755|ref|ZP_08054065.1| chaperone SurA [Helicobacter suis HS5]
 gi|321147826|gb|EFX42416.1| chaperone SurA [Helicobacter suis HS5]
          Length = 371

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 69/212 (32%), Gaps = 56/212 (26%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
            ++V    +    +    ++++  ++++                 + +++L+      Q 
Sbjct: 120 ALTVNNDPITL--YQIEMQEKVNHVNRQ-----------------QAINSLILQRIQAQE 160

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
           I+ + ++ +  +V  EI        K N  +   F+  LA EGIN   Y     K L   
Sbjct: 161 IKRLKIDIEDDKVDAEIENI----AKHNGMNVSDFMRTLAGEGINPVAYKAQLKKQLETR 216

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
           +++   +     +N                                S   + +++  ++D
Sbjct: 217 ELLRNILLFNANTN--------------------------------SETKMREYYNAHRD 244

Query: 223 NYRAPEYKRIS-YILFDVHEKEKKIEISNDEL 253
            +  P     + Y   D     + +E  + ++
Sbjct: 245 EFTVPSDVLATRYTAKDTQTLTQALEHKDTDV 276


>gi|281500876|pdb|3KAC|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|281500877|pdb|3KAC|B Chain B, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
          Length = 123

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    Q+EA E      Q +K G+  F  
Sbjct: 6   KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFES 65

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 66  LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 119


>gi|227543912|ref|ZP_03973961.1| peptidylprolyl isomerase [Lactobacillus reuteri CF48-3A]
 gi|300909659|ref|ZP_07127120.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus reuteri SD2112]
 gi|227186113|gb|EEI66184.1| peptidylprolyl isomerase [Lactobacillus reuteri CF48-3A]
 gi|300893524|gb|EFK86883.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus reuteri SD2112]
          Length = 312

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 64/193 (33%), Gaps = 31/193 (16%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI--------------EISNDE 252
           + S+  +   +  YK+ Y +     +          +++I               I+N +
Sbjct: 70  EVSDKQVNAQYNTYKNEYGSDFNAYLQSQNLTEKSLKQQIRSNLLLTAAARHYSHITNKQ 129

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK----KGKKFIQLAEEQGKSLS 308
           +  ++ K + K  +        ++  ++ +A++    L     K K F +LA+ +     
Sbjct: 130 INKQWTKYQPKVQT------ATILVGSKSDAEDIINQLNDSSNKYKTFKKLAKSKSTDSQ 183

Query: 309 DISLGSFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
             + G     +       D +   + F L      T  +    GY + ++         S
Sbjct: 184 TKNNGGKLPAFDNTDNQLDSAYKKAAFKLKTGEYTTTPVKTDDGYQVIYMIEHPAKGKKS 243

Query: 364 --FQEVKKDIANQ 374
               ++K  I  +
Sbjct: 244 QHINDLKNQIVQE 256



 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 74/230 (32%), Gaps = 36/230 (15%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           G+  V +    K+  S + +S KQ                        K++L  ++    
Sbjct: 23  GNKAVATTSGGKITESEYYSSMKQTSA--------------------GKQVLQQMILDKV 62

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L+   +  G E    +V    A+   +  +        F + L  + + EK         
Sbjct: 63  LE---KQYGKEVSDKQVN---AQYNTYKNEYGS----DFNAYLQSQNLTEKSLKQQIRSN 112

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L  T     +      +  +  Q  ++  + ++   +V +      I +     L     
Sbjct: 113 LLLTAAARHY--SHITNKQINKQWTKYQPKVQTATILVGSKSDAEDIIN----QLNDSSN 166

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           KYK   +  + K       +   K    + ++++L + Y+K   K  + E
Sbjct: 167 KYKTFKKLAKSKSTDSQTKNNGGKLPAFDNTDNQLDSAYKKAAFKLKTGE 216


>gi|89097668|ref|ZP_01170556.1| hypothetical protein B14911_14772 [Bacillus sp. NRRL B-14911]
 gi|89087527|gb|EAR66640.1| hypothetical protein B14911_14772 [Bacillus sp. NRRL B-14911]
          Length = 251

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 6/145 (4%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           V    TV  V   K+    F    +     +S ++     + +  S  + ++ +D+LV  
Sbjct: 58  VDEKETVAVVNDDKILGKDFNGMLQN--AQMSYQMSGQDPTTKEASEQIKQQTIDSLVGQ 115

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
           + + Q   + G +A    V G++        +        F + L   G+ E+E     +
Sbjct: 116 SLIMQEAAEKGYKASEEEVQGQLDEIKK-QYEG---DDKKFAAALKDAGLTEEELKGQIS 171

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQ 181
             +     +   +     +   +  
Sbjct: 172 DSIVSNKYIDKEIKADAATEEEVKA 196


>gi|119383650|ref|YP_914706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
 gi|119373417|gb|ABL69010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
          Length = 423

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%)

Query: 30  LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
           ++ A    +    +V V    V         +  L ++    G   ++E+A         
Sbjct: 19  VAPAFAQGNPFQPLVYVNDSVVTRYELDQRMRF-LQILRAPDGDRASAEQA--------- 68

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
              L+           +G+ A   ++   +A    F G+ N    + F   LA+ G+ ++
Sbjct: 69  ---LIDDRLRLFAARQMGIAASDAQIDAGLAE---FAGRAN-MDVEEFTRALAQAGVEQQ 121

Query: 150 EYIDHYTKMLS-RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
            + D     +  R  V    V  ++ S+  LDQ  +   E   + ++ L+   +PA  
Sbjct: 122 TFRDFIAAGVVWRELVRQRLVPQVQVSDAELDQEMQRVIETPRITHVALSELIIPAPP 179



 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 89/281 (31%), Gaps = 36/281 (12%)

Query: 136 VFVSRLAREGINEKEYIDHYTKMLS--RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            F+  L               + L   R  +      G+  S+  +D     +    ++D
Sbjct: 50  RFLQILRA----PDGDRASAEQALIDDRLRLFAARQMGIAASDAQIDAGLAEFAGRANMD 105

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
                     A  +             +  +R      + +          ++++S+ EL
Sbjct: 106 VEEFTRALAQAGVE-------------QQTFRDFIAAGVVWRELVRQRLVPQVQVSDAEL 152

Query: 254 QAEYEKNKEKYFSPEIRTV--EQLVFPNQ--------KEADEAFQSLKKGKKFIQLAEEQ 303
               ++ +    +P I  V   +L+ P          + A+   QS++    F   A + 
Sbjct: 153 D---QEMQRVIETPRITHVALSELIIPAPPGQEAQAMRLAESLVQSVRSEADFAAAARQH 209

Query: 304 GKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
             + S  + G      + +   SL   I S+ + G  +  +      V+ ++ + + +  
Sbjct: 210 SATPSAENGGRLPWAPLENLPPSLRPIILSM-QNGQISQPLTVEGAVVLFYLRDSRGTLR 268

Query: 362 V-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
             + ++V   +  ++  T  + ++        +      ++
Sbjct: 269 PGAKEQVLDYVRFRLASTAEANRIAALSDTCADLFVHARNL 309


>gi|119480665|ref|XP_001260361.1| peptidyl-prolyl cis/trans isomerase [Neosartorya fischeri NRRL 181]
 gi|119408515|gb|EAW18464.1| peptidyl-prolyl cis/trans isomerase [Neosartorya fischeri NRRL 181]
          Length = 178

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 12/91 (13%)

Query: 270 RTVEQLVFPNQKEADEAF----QSLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIP 321
           R  E  +  +++EA E      Q ++ G      +A    +   +     LG F +  + 
Sbjct: 91  REAE--ITRSKEEAIEILRGHEQRIRSGGVSLGDIAVSESDCSSARKKGDLGFFGRGEM- 147

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                D+ F+L + G  + ++  + G  +  
Sbjct: 148 QKEFEDAAFAL-QPGQVSGIVETASGVHLIE 177


>gi|311745521|ref|ZP_07719306.1| hypothetical protein ALPR1_03620 [Algoriphagus sp. PR1]
 gi|311302394|gb|EAZ82299.2| hypothetical protein ALPR1_03620 [Algoriphagus sp. PR1]
          Length = 291

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 68/221 (30%), Gaps = 41/221 (18%)

Query: 189 NRSVDYIVLNNRHVPAIADP-SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
            R    +      +  +  P ++  L ++ E++ + +  P       + F     +   +
Sbjct: 92  RRLSQKMEFMASDLTKLIAPATDEALQKYLEEHPEKFLYPPKYSFHILTFTSSNHDNPKD 151

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG--KKFIQLAEEQGK 305
            S   L+                           +       L KG   +     EE  K
Sbjct: 152 FSQSLLR-------------------------DADPSNLEALLNKGDITQIPTKLEEASK 186

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
              D  LG      + ++ +   +            IH  +G  +  +++   ++     
Sbjct: 187 QKVDRELGIEFHSSMNELPINQWV----------GPIHSGYGEHLLFITHKTEAYLPELA 236

Query: 366 EVKKDIANQM---RITKASEKVKEDYKRLEEFLALGTSMDE 403
           E++ ++          K+ E + ++ K+  E +    S+DE
Sbjct: 237 EIRDEVQRDFEYDMEQKSKEVIYQEIKKNYEIVIDSESLDE 277


>gi|256545178|ref|ZP_05472544.1| hypothetical protein HMPREF0078_0801 [Anaerococcus vaginalis ATCC
           51170]
 gi|256399219|gb|EEU12830.1| hypothetical protein HMPREF0078_0801 [Anaerococcus vaginalis ATCC
           51170]
          Length = 300

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/338 (11%), Positives = 94/338 (27%), Gaps = 92/338 (27%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS-----VGLDKKILD 91
                 V  V  + +    F            +K G      +++        L+ ++LD
Sbjct: 26  FDKDKYVAVVNDEGISKELFEKELSYYQKFYLKKYGDKFLDSKSKKGDSNYKKLESELLD 85

Query: 92  NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
           +L+    +   ++  G++         I +           S D  +  +   G+ E E+
Sbjct: 86  SLIMDQAMLNDLKKNGIKVTKNDSQEIIDKIS--QEIS---SKDSLIENVKSFGVTEDEF 140

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
            +                               +    R   Y      +        ++
Sbjct: 141 EE-----------------------------ISYQDSIRKKHY-----DYFLNNNKVKDS 166

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
            + +++E  K+ ++                            + +Y+             
Sbjct: 167 KILKYYEDNKNLHK----------------------------KYKYDC------------ 186

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
              L+F ++KEA +   ++K    F     +        +   +  E++ +        S
Sbjct: 187 ---LIFDDKKEAIKIRSNIKNSDDF-----KNHLKNKVRNYDIYRSEFVYNDDNLLKESS 238

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
           L K  + + V      Y+I  V++I  +      + K+
Sbjct: 239 LTKASEISNVFKYKDSYIILMVNSINNNKKSLLLDAKE 276


>gi|213611260|ref|ZP_03370086.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 200

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 6/145 (4%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENR 190
           + D   SRLA +G+N   Y +   K +  ++V        +      +D   +    +N 
Sbjct: 110 TMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQND 169

Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQ 215
           +   + L++  +    +P++  +  
Sbjct: 170 ASTELNLSHILIALPENPTSEQVND 194


>gi|259090316|pdb|3IK8|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 gi|259090317|pdb|3IK8|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 gi|259090318|pdb|3IKD|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 gi|259090319|pdb|3IKD|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 gi|259090320|pdb|3IKG|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 gi|259090321|pdb|3IKG|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 gi|293651898|pdb|3JYJ|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
 gi|293651899|pdb|3JYJ|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
 gi|294979472|pdb|3I6C|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
 gi|294979473|pdb|3I6C|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
          Length = 123

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    Q+EA E      Q +K G+  F  
Sbjct: 6   KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFES 65

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+  +      D+ F+L + G+ +  +    G  I 
Sbjct: 66  LASQFSDCSSAKARGDLGAFSRGQMQKP-FEDASFAL-RTGEMSGPVFTDSGIHII 119


>gi|94500922|ref|ZP_01307447.1| Parvulin-like peptidyl-prolyl isomerase [Oceanobacter sp. RED65]
 gi|94426862|gb|EAT11845.1| Parvulin-like peptidyl-prolyl isomerase [Oceanobacter sp. RED65]
          Length = 89

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
            +  ++       +   ++L++G  F QLA+E      +     LG+ S++  P      
Sbjct: 2   EIRHILLHTPLLVEPIIKNLEEGADFAQLAQEHSACPSAKDGGKLGNMSEQDFPAEI--K 59

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
                A  G     I    G  I  
Sbjct: 60  EALESAPLGTVVGPIETHHGIHILR 84


>gi|331266535|ref|YP_004326165.1| foldase protein PrsA [Streptococcus oralis Uo5]
 gi|326683207|emb|CBZ00825.1| foldase protein PrsA [Streptococcus oralis Uo5]
          Length = 313

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 79/252 (31%), Gaps = 37/252 (14%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I E ++ +      +   V+            L    ++ + +    +    +     A 
Sbjct: 38  ITEHQFFEEVKNNPTAQQVL------------LNMTIQKVFEQQYGSEVTDKDVDDAVA- 84

Query: 206 ADPSNAVLTQWFEKY----KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
                    ++ + Y    +     PE ++       + E   K    ++     Y+K  
Sbjct: 85  -----EEQKKYGDSYNSVLQRAGMTPETRKAQIRTSKLVELAVKKAAESELTDEAYQKAF 139

Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLG----SFS 316
           E Y      T + +   N+ +A E  +  K  G  F QLA++          G      S
Sbjct: 140 EAYTPD--VTAQIIRMDNEDKAKEVLEKAKAEGADFAQLAKDNSNDDKTKENGGEITFDS 197

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIH------GSFGYVIAHVSNIKPSFTVSFQEVKKD 370
                   +  + F+L   G  + VI        S  + I  V+      + + ++ K+ 
Sbjct: 198 ASTELPEQVKKAAFALDVNG-VSDVITATGTQAYSSQFYIIKVTKKTE-KSSNIEDYKEK 255

Query: 371 IANQMRITKASE 382
           +   +   K ++
Sbjct: 256 LKTIILTQKQND 267


>gi|297832446|ref|XP_002884105.1| PIN1AT [Arabidopsis lyrata subsp. lyrata]
 gi|297329945|gb|EFH60364.1| PIN1AT [Arabidopsis lyrata subsp. lyrata]
          Length = 119

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 49/117 (41%), Gaps = 13/117 (11%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQ 298
            +++ S+  ++ +  + K  +  PE +    ++   ++ A E  +S+++        F +
Sbjct: 5   DQVKASHILIKHQGSRRKASWKDPEGK---IILTTTREAAVEQLKSIREDIVSGKANFEE 61

Query: 299 LA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           +A    +   +     LG F +  +      ++ ++L K GD + ++    G  I  
Sbjct: 62  VATRVSDCSSAKRGGDLGPFGRGQMQKP-FEEATYAL-KVGDISDIVDTDSGVHIIK 116


>gi|212532779|ref|XP_002146546.1| peptidyl-prolyl cis/trans isomerase [Penicillium marneffei ATCC
           18224]
 gi|210071910|gb|EEA25999.1| peptidyl-prolyl cis/trans isomerase [Penicillium marneffei ATCC
           18224]
          Length = 191

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAF----QSLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA E      Q +K G+ +   LA    +   +     LG F    +      +
Sbjct: 90  ITRTKEEAIEILRGHEQRIKSGEVRLADLAVSESDCSSARKKGDLGFFGHGEM-QKEFEE 148

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L + G+ + ++    G  +  
Sbjct: 149 AAFAL-QPGEVSSIVETQSGVHLIE 172


>gi|182677646|ref|YP_001831792.1| hypothetical protein Bind_0653 [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182633529|gb|ACB94303.1| conserved hypothetical protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 306

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 68/236 (28%), Gaps = 26/236 (11%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           + S+    +         K                   R     +  +++L +       
Sbjct: 34  IASINGDPITNIDVDERMKMLR--------------VLRKPATREAAMESLYTDRLETHE 79

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
               G++     +  EI R      ++ K   +  ++ L   G++   +  H+   L+  
Sbjct: 80  AARYGVKPKDADIGQEIVRV----AQEMKVQPEALIAALQNAGVSPDHFKAHFGADLAFG 135

Query: 163 DVVGMFVGGMRPSNLLL-DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY- 220
            +VG    G+  S   +  +  R   +  +     L         + + A +    ++  
Sbjct: 136 ALVGALNKGVEASETEVRKELARQGGKAAAGTEYTLRQVIFSLPNNVAPAAINARGQEAE 195

Query: 221 --KDNYRAPEYKRISYILFDVHEKEKKIEISNDEL----QAEYEKNKEKYFSPEIR 270
             +  +   E         +       I  ++ E+    +   +K    + +P  R
Sbjct: 196 QLRQRFADCESGEKMVFALNDVTIRDPIRRTSTEISEGLRNLLDKTPVGHLTPPQR 251


>gi|78357081|ref|YP_388530.1| hypothetical protein Dde_2038 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219486|gb|ABB38835.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 335

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 85/253 (33%), Gaps = 32/253 (12%)

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-LLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           +  +    Y   L+   V  +    +  S L + D+      E    DY          +
Sbjct: 61  SVDQLRKDYGSALAGLIVQRLVEQDLEKSGLDVTDEEVLKAEEEVRADY---PPGEFEKV 117

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
                  +  + +     Y     + +    F        I +S +E +  Y+ +   ++
Sbjct: 118 L------VEDYIDLATWRYML--RQHLQREKFRSEILRPAISLSFEEAEDYYKAHLSDFY 169

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
            PE      +  P++   ++A   L +GK   ++            LGSFS+  + ++ +
Sbjct: 170 LPERINFLYISGPDRGTVEKARDLLTEGKDRAEV------------LGSFSQLSVRELKM 217

Query: 326 ADS--------IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
            +         + +  + G  +PV++G  GY    +  + P   +   +    I   +  
Sbjct: 218 REDRIHGTWKQLLAKLEDGQASPVLNGEAGYEAFIMLGLLPEKVLGPSQAYPIIERLLIE 277

Query: 378 TKASEKVKEDYKR 390
            K  +   +  ++
Sbjct: 278 EKMQQVYAQWLEK 290


>gi|298503010|ref|YP_003724950.1| peptidylprolyl isomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238605|gb|ADI69736.1| peptidylprolyl isomerase [Streptococcus pneumoniae TCH8431/19A]
          Length = 344

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 62/196 (31%), Gaps = 20/196 (10%)

Query: 203 PAIADPSNAVLTQWFEKYKDN-----YRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
               D + A   + + +             E ++       + E   K     +     Y
Sbjct: 107 DKEVDDTIAEEKKQYGENYQRVLSQAGMTLETRKAQIRTSKLVELAVKKVAEAELTDEAY 166

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLG--- 313
           +K  ++Y      T + +   N+ +A E  +  K  G  F QLA++          G   
Sbjct: 167 KKAFDEYTPD--VTAQIIRLNNEDKAKEVLEKAKAEGADFAQLAKDNSTDEKTKENGGEI 224

Query: 314 -SFSKEYIPDVSLADSIFSLAKKGDFTPVIH------GSFGYVIAHVSNIKPSFTVSFQE 366
              S        +  + F+L   G  + VI        S  Y I  ++      + +  +
Sbjct: 225 TFDSASTEVPEQVKKAAFALDVDG-VSDVITATGTQAYSSQYYIVKLTKKTE-KSSNIDD 282

Query: 367 VKKDIANQMRITKASE 382
            K+ +   +   K ++
Sbjct: 283 YKEKLKTVILTQKQND 298


>gi|15611671|ref|NP_223322.1| hypothetical protein jhp0604 [Helicobacter pylori J99]
 gi|4155156|gb|AAD06185.1| putative [Helicobacter pylori J99]
          Length = 413

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 174 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 229

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 230 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 264

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 265 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLE 316

Query: 253 L 253
           +
Sbjct: 317 V 317


>gi|323694481|ref|ZP_08108651.1| hypothetical protein HMPREF9475_03515 [Clostridium symbiosum
           WAL-14673]
 gi|323501469|gb|EGB17361.1| hypothetical protein HMPREF9475_03515 [Clostridium symbiosum
           WAL-14673]
          Length = 314

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 66/185 (35%), Gaps = 25/185 (13%)

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKN----------------KEKYFSPEIRTVEQL 275
             Y      E  + + +S ++++A +E                  +      ++ TV Q 
Sbjct: 110 AEYFGNLTAEDIEHMGVSEEDVRAVFEDYCLAEKLVEELTKGIDLEVSDSEAKVITVMQA 169

Query: 276 VFPNQKEADEA-FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
              +++ A+     + ++   F + A + G S +   LG   +         D+ F+L+ 
Sbjct: 170 ETADRQTAENLSLAAAQENADFEKCASDAGLSATTRQLGRKEES----QEFEDAAFALS- 224

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            G  + VI  +  Y +    +       +    +K I  + R  KA +++ + ++     
Sbjct: 225 AGQVSQVIESNGTYYVIKCISDYDEEATA---ARKKIIFEERKRKAFKEIYDSFREGINL 281

Query: 395 LALGT 399
              G 
Sbjct: 282 TYSGD 286



 Score = 37.3 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           EV     K    ++        A  L L  ++E  +F     + G S  TT Q+ R +  
Sbjct: 155 EVSDSEAKVITVMQAETADRQTAENLSLAAAQENADFEKCASDAGLS-ATTRQLGRKEES 213

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
            +F         F+     V      NG  YV+  +++        + K I
Sbjct: 214 QEFE-----DAAFALSAGQVSQVIESNGTYYVIKCISDYDEEATAARKKII 259


>gi|325088478|gb|EGC41788.1| peptidyl-prolyl cis-trans isomerase [Ajellomyces capsulatus H88]
          Length = 181

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAFQ----SLKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  +++EA E  +     ++ G+           +   +     LG F +  +      +
Sbjct: 96  ITRSKEEALEILRGHERRIRAGEATLGDIAMSESDCSSARKKGDLGFFGRGEM-QTEFEE 154

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L + G  + ++  + G  +  
Sbjct: 155 AAFAL-QPGQVSGIVETASGVHLIE 178


>gi|317033797|ref|XP_001395465.2| peptidyl-prolyl cis-trans isomerase ssp-1 [Aspergillus niger CBS
           513.88]
          Length = 189

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 12/91 (13%)

Query: 270 RTVEQLVFPNQKEADEAF----QSLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIP 321
           R  E  +  +++EA E        +  G+     +A    +   +     LG F +  + 
Sbjct: 100 REAE--ITRSKEEAIEILRGHEARINAGEASLGDIAVSESDCSSARKRGDLGFFGRNEM- 156

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                D+ F+L + G  + ++  + G  +  
Sbjct: 157 QKEFEDAAFAL-QPGQVSGIVETASGVHLIE 186


>gi|109892824|sp|P0C1J8|PIN1_RHIOR RecName: Full=Peptidyl-prolyl cis-trans isomerase pin1;
           Short=PPIase pin1; AltName: Full=Parvulin pin1
          Length = 150

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 36/132 (27%)

Query: 254 QAEYEK---NKEKYFSP------EIRTVEQLVFPN-----------------QKEADEAF 287
           +  Y     N+ ++ +P      E      L+  +                 ++EA +  
Sbjct: 17  KDYYYNTVTNESRWDAPVLKGELERVRASHLLIKSRESRRPSSWREEHITRSKEEALKIL 76

Query: 288 Q----SLKKG-KKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                 ++ G +    LA       S      LG F +  +      ++ F+L + G+ +
Sbjct: 77  TDFQHKIESGQETLSALATNYSDCTSAKRGGDLGYFERGQMQKP-FEEATFAL-QVGELS 134

Query: 340 PVIHGSFGYVIA 351
             +    G  + 
Sbjct: 135 KPVWTDSGVHLI 146


>gi|256599527|pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 27/116 (23%)

Query: 261 KEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-KFIQ 298
           K     P       L+                    ++EA E      Q +K G+  F  
Sbjct: 46  KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 105

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA +      + +   LG+FS+         D+ F+L + G+ +  +    G  I 
Sbjct: 106 LASQFSDCSSAKARGDLGAFSRGQ-AQKPFEDASFAL-RTGEMSGPVFTDSGIHII 159


>gi|255690565|ref|ZP_05414240.1| peptidyl-prolyl cis-trans isomerase [Bacteroides finegoldii DSM
           17565]
 gi|260624026|gb|EEX46897.1| peptidyl-prolyl cis-trans isomerase [Bacteroides finegoldii DSM
           17565]
          Length = 515

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 54/156 (34%), Gaps = 21/156 (13%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
            R+SY    +  +  ++++   ++             P+  T    +   +   D  +Q+
Sbjct: 110 VRVSYQKMALKARTGQVQV--MQIFKY---------LPQTITSRH-LEEEKARMDSIYQA 157

Query: 290 LKK--GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           ++   G  F  L +       +  +G         V   +  F+L+K G+ +       G
Sbjct: 158 IRNQPGLDFSALVKCYSDDRQNRWIGGLQTT----VEFENIAFALSK-GEISEPFFTPAG 212

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             I  V + K      +++V   I  ++   +   +
Sbjct: 213 IHILKVMDRKE--LPVYEDVVDGIVQRILHKEIRNQ 246


>gi|121698307|ref|XP_001267778.1| peptidyl-prolyl cis/trans isomerase [Aspergillus clavatus NRRL 1]
 gi|119395920|gb|EAW06352.1| peptidyl-prolyl cis/trans isomerase [Aspergillus clavatus NRRL 1]
          Length = 188

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAF----QSLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  +++EA E      Q ++ G+     +A    +   +     LG F +  +      D
Sbjct: 103 ITRSKEEAIEILRGHEQRIQSGEVSLGDIAVSESDCSSARKKGDLGFFGRGEM-QKEFED 161

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L + G  + ++  + G  +  
Sbjct: 162 AAFAL-QPGQVSGIVETASGVHLIE 185


>gi|153814526|ref|ZP_01967194.1| hypothetical protein RUMTOR_00740 [Ruminococcus torques ATCC 27756]
 gi|317500569|ref|ZP_07958790.1| hypothetical protein HMPREF1026_00733 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089331|ref|ZP_08338232.1| hypothetical protein HMPREF1025_01815 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848020|gb|EDK24938.1| hypothetical protein RUMTOR_00740 [Ruminococcus torques ATCC 27756]
 gi|316898002|gb|EFV20052.1| hypothetical protein HMPREF1026_00733 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405512|gb|EGG85044.1| hypothetical protein HMPREF1025_01815 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 356

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
              +  A+   +  K G+ F  +A E G  +   +    +K   PD +L ++  +LA +G
Sbjct: 208 AKAKSTAETIAERAKAGEDFAAVAAELGTEVQKTA--FDAKSTSPDAALIEAANALAAEG 265

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           D T  I    G  +A ++++         E        +   +  E+     K+
Sbjct: 266 DVTGAIESDAGVYVAKLTSLLDR------EATDQKKASIIEERKQEQYDSLLKK 313



 Score = 42.3 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 496 AEEVSSKA-NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
            E+  +K+  + + E +K G++F  +   LG  +  T      D ++       I    +
Sbjct: 205 EEKAKAKSTAETIAERAKAGEDFAAVAAELGTEVQKTA----FDAKSTSPDAALIEAANA 260

Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
              E      IE+     V K+T   +   +  D+  + + +   ++  DS++   + + 
Sbjct: 261 LAAEGDVTGAIESDAGVYVAKLT--SLLDREATDQKKASIIEERKQEQYDSLLKKWRKET 318

Query: 615 SV 616
            +
Sbjct: 319 DI 320


>gi|68160702|gb|AAY86797.1| lr0370 [Lactobacillus reuteri]
          Length = 312

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 64/193 (33%), Gaps = 31/193 (16%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI--------------EISNDE 252
           + S+  +   +  YK+ Y A     +          +++I               I+N +
Sbjct: 70  EVSDKQVNAQYNTYKNEYGADFNAYLQSQNLTEKSLKQQIRSNLLLTAAARHYSHITNKQ 129

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK----KGKKFIQLAEEQGKSLS 308
           +  ++ K + K  +        ++  ++ +A++    L     K K F +LA+ +     
Sbjct: 130 INKQWTKYQPKVQT------ATILVGSKSDAEDIINQLNDSSNKYKTFKKLAKSKSTDSQ 183

Query: 309 DISLGSFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
             + G     +       D +   + F L      T  +    GY + ++         S
Sbjct: 184 TKNNGGKLPAFDNTDNQLDSAYKKAAFKLKTGEYTTTPVKTDDGYQVIYMIEHPAKGKKS 243

Query: 364 --FQEVKKDIANQ 374
               ++K  I  +
Sbjct: 244 QHINDLKNQIVQE 256



 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 36/230 (15%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           G+  V +    K+  S + +S KQ                        K++L  ++    
Sbjct: 23  GNKAVATTSGGKITESEYYSSMKQTSA--------------------GKQVLQQMILDKV 62

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L+   +  G E    +V  +       +G D       F + L  + + EK         
Sbjct: 63  LE---KQYGKEVSDKQVNAQYNTYKNEYGAD-------FNAYLQSQNLTEKSLKQQIRSN 112

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L  T     +      +  +  Q  ++  + ++   +V +      I +     L     
Sbjct: 113 LLLTAAARHY--SHITNKQINKQWTKYQPKVQTATILVGSKSDAEDIIN----QLNDSSN 166

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           KYK   +  + K       +   K    + ++++L + Y+K   K  + E
Sbjct: 167 KYKTFKKLAKSKSTDSQTKNNGGKLPAFDNTDNQLDSAYKKAAFKLKTGE 216


>gi|319939473|ref|ZP_08013833.1| foldase prsA [Streptococcus anginosus 1_2_62CV]
 gi|319811459|gb|EFW07754.1| foldase prsA [Streptococcus anginosus 1_2_62CV]
          Length = 312

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 93/264 (35%), Gaps = 26/264 (9%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++ M    +  ++           +   ++  +            +   +T+ F K K  
Sbjct: 29  IITMKGNTITVNDFYNKVKNNAAAQQVLLNMTIQEVFEKSYGKHVTEKEVTETFNKSKST 88

Query: 224 YRAPEYKRISYILFDVHEKEKKI-----------EISNDELQAEYEKNKEKYFSPEIRTV 272
           Y     + ++          ++I           + +  EL     K   + ++PE+ T 
Sbjct: 89  YGTAFQQVLARAGLTEDTYREQIRTNKLVEYAVKKAAEKELTDANYKKAYESYTPEV-TA 147

Query: 273 EQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLA 326
           + +   +Q +A E  +  K  G  F Q+A+E          G   K       +PD ++ 
Sbjct: 148 QIIKVDSQDKAKEVLEKAKAEGADFGQIAKENSTDTKTKDKGGEVKFDSASTDVPD-AVK 206

Query: 327 DSIFSLAKKGDFTPVIHGS-----FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
            + F+L   G  + VI          Y I  +++ K   + ++++ KK + N +   K +
Sbjct: 207 KAAFALEANG-ISDVITVKSSTYSSSYYIVKLNS-KSEKSANWKDYKKQLKNVILTQKQN 264

Query: 382 EKVKEDYKRLEEFLALGTSMDEIS 405
           ++        +E  A    + + +
Sbjct: 265 DRTFIQKIVAKELQAANIKVKDQA 288


>gi|254372658|ref|ZP_04988147.1| hypothetical protein FTCG_00222 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374119|ref|ZP_04989601.1| peptidylprolyl isomerase [Francisella novicida GA99-3548]
 gi|151570385|gb|EDN36039.1| hypothetical protein FTCG_00222 [Francisella novicida GA99-3549]
 gi|151571839|gb|EDN37493.1| peptidylprolyl isomerase [Francisella novicida GA99-3548]
          Length = 92

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLAD 327
              L+  ++ E  +  + + +GK  F + A +     S      LG+FS+  +       
Sbjct: 5   ARHLLVQSESECQQIKKDITEGKITFEEAARKHSLCPSGARGGDLGTFSQGQMV-PEFDR 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +F+  +       +   FGY +  +++ 
Sbjct: 64  VVFN-DELNKVHGPVQTQFGYHLLEITSR 91


>gi|307546074|ref|YP_003898553.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
           DSM 2581]
 gi|307218098|emb|CBV43368.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
           DSM 2581]
          Length = 213

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 9/132 (6%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S       +    +  + G  V  +      L +++LD LV     
Sbjct: 32  DRIVAVVNEGAIMNSQLEERVARTRAQMEAQ-GVEVPPDDV----LRQQVLDRLVIEEIQ 86

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q   +  L  D   +  ++        ++N  + + F   L  +G++     D   + L
Sbjct: 87  LQMAREANLSVDDTELNRQVRAI----AQNNDMTLEQFADALEADGLSLGVVRDQVRREL 142

Query: 160 SRTDVVGMFVGG 171
               +    VG 
Sbjct: 143 LMRQIQQRRVGS 154


>gi|171910549|ref|ZP_02926019.1| hypothetical protein VspiD_05235 [Verrucomicrobium spinosum DSM
           4136]
          Length = 297

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 67/207 (32%), Gaps = 39/207 (18%)

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
            R    +    + +   A P  A +  +F+K    Y  P      ++ F   ++ +K++ 
Sbjct: 100 RRLAQKMEFLTQDIATSAPPDEASINAFFKKNAGRYAPPARVSFRHVYFSREKRGEKLD- 158

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-L 307
                                             A EA  +L+ G    +   + G + L
Sbjct: 159 --------------------------------ANAKEALAALQDGNASDE---DFGDAFL 183

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 + S+  I  +   +   +L K  + T    +  ++G  +  ++    S      
Sbjct: 184 QPFEYSNQSEADIAGIFGREFAAALMKSPESTWLGPVASTYGVHLVRITGSHASPPTELG 243

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLE 392
           +V++ +   +   +     +E  ++++
Sbjct: 244 KVREQVLRDLVDERRRTANEEVLQQMK 270


>gi|125975643|ref|YP_001039553.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum ATCC 27405]
 gi|125715868|gb|ABN54360.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum ATCC 27405]
          Length = 382

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/416 (12%), Positives = 123/416 (29%), Gaps = 86/416 (20%)

Query: 1   MLEIIRKASRTWVAKI-----FLVVLFVPFLIWGLSDALFSV--SGSSTVVSVGRQKVPF 53
           M+E     S+  V K+        +L +  ++  L      +     S +  V  + V  
Sbjct: 15  MMENNAGISKKPVVKVHVILLVAGILVLSAVLAILVAYQAGLIYGDFSELARVNGEPVYV 74

Query: 54  SSFINSW----KQELGMISQK--------IGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
             +         + +   SQ               S  A      KK LD++V       
Sbjct: 75  KEYKMKLLSNTTEVINYFSQSYAVETKENFRTDSYSGEAPVEMARKKALDDIVEVKVQQI 134

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
             ++ G+                            +   L      E E  +   K   +
Sbjct: 135 LAKEKGIIESTD-----------------------YREFLK-----ELENENRQRKDALK 166

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           ++ V      +   +   +    ++  +       L  +            L   +   K
Sbjct: 167 SNKV------VYGPDNYGE--IEYFNYSFDNMVSKLKEKLKENELSIPEEKLESMYNLLK 218

Query: 222 D-NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
           D  ++ P+  +I  I         +  I ND+L++                        +
Sbjct: 219 DTRFKLPDDIKIQVISI---GFTDEKGIINDDLKS----------------------KAR 253

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD----VSLADSIFSLAKKG 336
            + +EA + +  G+ F ++A +       +      ++ +        L D    L K G
Sbjct: 254 VKIEEAKKRIDNGEPFEEVALDYNPKSGVLEYVFTKEKQMAKDISHPELLDEALKL-KPG 312

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             + +I  S  +V+      K +  + +++ +K + +++      E + +  ++ +
Sbjct: 313 QVSEIIERSTDFVLILCKEKKSTGYLPYKDARKQLLDELIEKDYQEYIDKLVEQAD 368



 Score = 37.3 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 9/155 (5%)

Query: 480 EEVLTDVKKDWKTVK---TAEEVSSKAN---QLVLEYSKEGKNFRDIGKNLGAS--LLTT 531
           +++   V     T +     +++ SKA    +   +    G+ F ++  +      +L  
Sbjct: 226 DDIKIQVISIGFTDEKGIINDDLKSKARVKIEEAKKRIDNGEPFEEVALDYNPKSGVLEY 285

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
                          + + +        V      +    ++        G +  KD   
Sbjct: 286 VFTKEKQMAKDISHPELLDEALKLKPGQVSEIIERSTDFVLILCKEKKSTGYLPYKDARK 345

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
             L +++ KD     I  L  Q  V +++ L +R 
Sbjct: 346 QLLDELIEKD-YQEYIDKLVEQADVKINEKLYRRI 379


>gi|152955221|emb|CAM59671.1| parvulin-type peptidyl-prolyl cis/trans isomerase [Lotus japonicus]
          Length = 122

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQLAE---EQGKSLSDI 310
           + K  +  PE R ++      ++ A     +L++        F  +A    +   +    
Sbjct: 23  RRKASWKDPEGRVIKN---TTRESAVAQLSTLREDILSGKANFEDVASRISDCSSAKRGG 79

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            LG F +  +      ++ F+L K GD + ++    G  I  
Sbjct: 80  DLGPFGRGQMQKP-FEEATFAL-KVGDISEIVDTDSGVHIIK 119


>gi|71023841|ref|XP_762150.1| hypothetical protein UM06003.1 [Ustilago maydis 521]
 gi|46101742|gb|EAK86975.1| hypothetical protein UM06003.1 [Ustilago maydis 521]
          Length = 174

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 29/114 (25%)

Query: 266 SPEIRTVEQLVFP--------NQKEA------DEAFQSLKKGK----------KFIQLAE 301
            P+      L+          + KEA       +A + LKK +          KF  LA 
Sbjct: 60  KPDKVRASHLLIKHAGSRRPSSWKEANITRSKQDAIEQLKKFEQELQQDSSKDKFASLAS 119

Query: 302 ---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
              +   + +   LG F +  +      D+ F L K G+ + ++    G  + +
Sbjct: 120 VHSDCSSARAGGDLGFFQRGQMQKP-FEDAAFGL-KPGELSSIVDTDSGVHLIY 171


>gi|224373789|ref|YP_002608161.1| putative periplasmic protein [Nautilia profundicola AmH]
 gi|223588950|gb|ACM92686.1| putative periplasmic protein [Nautilia profundicola AmH]
          Length = 270

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 14/162 (8%)

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
                   + K++IS DEL+  YE NK+++       V +    N+K        +KK  
Sbjct: 118 EKLFNQIVQTKLKISQDELKNFYENNKDQFKIFSTVQVTKYTANNKKS----LNEIKKN- 172

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
               LA    K+ + +    +S   +P   L   +F   K G+FTP+I+    Y + +V+
Sbjct: 173 ---PLANANVKTETKV----YSYNELPLGLLF--LFKQTKVGEFTPIINDGLAYSMYYVA 223

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
               S  + F++VK  IAN++   K    +K+ + +L+    
Sbjct: 224 RKDGSVYIPFEKVKNAIANKLAAQKREMILKDYFNKLKNRAY 265



 Score = 44.2 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 64/235 (27%), Gaps = 69/235 (29%)

Query: 15  KIFLVV-LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           KI  V+ L +          L S      + +V    +                      
Sbjct: 3   KILFVLSLIIS---------LHSEVIDKIIATVNNIPITSYEVD---------------- 37

Query: 74  VVNSERARSVGL-DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
               + A S+ +   K L  L+    +   I+  G++ D   +   + +      K N  
Sbjct: 38  ----KLASSLKISKDKALQYLLDQKLIQSEIQKRGIDVDDFEIENAMEKI----AKQNGL 89

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
           S   F + L ++G   ++  +     L +  +                            
Sbjct: 90  SLFEFKNILMQKG-QYQQLRNKIKDDLLKEKLFNQI------------------------ 124

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
                    V      S   L  ++E  KD ++     +++    +  +   +I+
Sbjct: 125 ---------VQTKLKISQDELKNFYENNKDQFKIFSTVQVTKYTANNKKSLNEIK 170


>gi|121612944|ref|YP_001000964.1| hypothetical protein CJJ81176_1306 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005873|ref|ZP_02271631.1| hypothetical protein Cjejjejuni_06850 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249622|gb|EAQ72581.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 271

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 65/172 (37%), Gaps = 28/172 (16%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
           + + F  +  +    + + ++  V V ++ +       +                     
Sbjct: 4   ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTM-------------------- 41

Query: 81  RSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           +++ +D+ K L  L++       ++ +G+  +   +   I +        NK + + F +
Sbjct: 42  KALKIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKM----LAQNKTTLNAFKA 97

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
            L  +  + +++  ++ K L +  +       M  ++   D AK+F+ +N+ 
Sbjct: 98  NLKSKNRSYEQFRTNFKKDLEKRKLYEKI-ASMAKTDFSDDGAKKFFEQNKD 148



 Score = 44.6 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 72/179 (40%), Gaps = 19/179 (10%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +E+++ N++    KR  Y          K + S+D  +  +E+NK+K+           +
Sbjct: 106 YEQFRTNFKKDLEKRKLYEKI---ASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYL 162

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             N +  +    + K       + + Q  SL+  +        +  + +          G
Sbjct: 163 SNNPQTLENIKNTKK------TILKPQNASLNTSNADPRLLGLLSQIPV----------G 206

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
            F+PV++G  GY +  V +   + T  +++VK ++ N     +    +++ + +L   +
Sbjct: 207 GFSPVLNGKNGYELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKI 265


>gi|315221816|ref|ZP_07863728.1| foldase protein PrsA [Streptococcus anginosus F0211]
 gi|315189049|gb|EFU22752.1| foldase protein PrsA [Streptococcus anginosus F0211]
          Length = 312

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 91/264 (34%), Gaps = 26/264 (9%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++ M    +  ++           +   ++  +            +   + + F K K  
Sbjct: 29  IITMKGNTITVNDFYNKVKNNAAAQQVLLNMTIQEVFEKSYGKHVTEKEVNETFNKSKST 88

Query: 224 YRAPEYKRISYILFDVHEKEKKI-----------EISNDELQAEYEKNKEKYFSPEIRTV 272
           Y     + ++          ++I           + +  EL     K   + ++PE+ T 
Sbjct: 89  YGTAFQQVLARAGLTEDTYREQIRTNKLVEYAVKKAAEKELTDANYKKAYESYTPEV-TA 147

Query: 273 EQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLA 326
           + +   NQ +A E     K  G  F Q+A+E          G   K       +PD ++ 
Sbjct: 148 QIIKVDNQDKAKEVLAKAKAEGADFGQIAKENSTDKKTKDKGGEVKFDSASTDVPD-AVK 206

Query: 327 DSIFSLAKKGDFTPVIHGS-----FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
            + F+L   G  + VI          Y I  +++ K   + ++++ KK + N +   K +
Sbjct: 207 KAAFALEANG-ISDVITVKSSTYSSSYYIVRLNS-KSEKSANWKDYKKQLKNVILTQKQN 264

Query: 382 EKVKEDYKRLEEFLALGTSMDEIS 405
           ++        +E  A    + + +
Sbjct: 265 DRTFIQKIVAKELQAANIKVKDQA 288


>gi|283956683|ref|ZP_06374162.1| hypothetical protein C1336_000260133 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791932|gb|EFC30722.1| hypothetical protein C1336_000260133 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 271

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 72/234 (30%), Gaps = 59/234 (25%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
           + + F  +  +    + + ++  V V ++ +       +                     
Sbjct: 4   ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTM-------------------- 41

Query: 81  RSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           + + +D+ + L  L++       ++ +G+  +   +   I +        NK + + F +
Sbjct: 42  KVLKIDRNQALGVLINEKMEISQMKQLGIVVNDLELDDAINKM----LAQNKTTLNAFKA 97

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L  +  + +++  +  K L +  +                                   
Sbjct: 98  NLKSKNQSYEQFRANLKKDLEKRKLYEKIAS----------------------------- 128

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               A  D S+    ++FE+ KD +        +  L +  +  + I+ +   +
Sbjct: 129 ---MAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKKTI 179



 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 71/179 (39%), Gaps = 19/179 (10%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +E+++ N +    KR  Y          K + S+D  +  +E+NK+K+           +
Sbjct: 106 YEQFRANLKKDLEKRKLYEKI---ASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYL 162

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             N +  +    + K       + + Q  SL+  +        +  + +          G
Sbjct: 163 SNNPQTLENIKNTKK------TILKPQNASLNTSNADPRLLGLLSQIPV----------G 206

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
            F+PV++G  GY +  V +   + T  +++VK ++ N     +    +++ + +L   +
Sbjct: 207 GFSPVLNGKNGYELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKI 265


>gi|91977437|ref|YP_570096.1| hypothetical protein RPD_2969 [Rhodopseudomonas palustris BisB5]
 gi|91683893|gb|ABE40195.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 309

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 21/167 (12%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
            L +    F    +   L   +  S  V V  + +   +F    + +L  +S        
Sbjct: 9   ILGLAL--FCTVTVGGGLGVATAQSVAVMVNGEPIT--NFDIEQRSKLDRLS-------- 56

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
               R+    +++LD L+      +  +  G+      +    +          + S D 
Sbjct: 57  ----RASRTRQQVLDELIDEKVKIREGKKYGVSPSDSDIESSFSTM----SSRMRMSPDQ 108

Query: 137 FVSRLAREGINEKEYIDHYTKMLS-RTDVVGMFVGGMRPSNLLLDQA 182
               L+ +GI  +         +   + V G F   +      +   
Sbjct: 109 MTKMLSAQGIRPETLKSKIKAEMVWASLVRGRFKDSLLVGEKDIQAQ 155


>gi|316964063|gb|EFV49351.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Trichinella
           spiralis]
          Length = 183

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 275 LVFPNQKEA----DEAFQSLKKGKK-FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLA 326
           ++  ++++A          +  GK  F  LA +      + +   LG F +  +      
Sbjct: 97  VITRSKEDALHLIQAYRDEISSGKAEFRTLASKYSDCSSAKNGGDLGYFKRGQMQKP-FE 155

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIA 351
           ++ F+L   G+ +  +    G  I 
Sbjct: 156 EAAFALT-LGELSQPVETESGIHII 179


>gi|317010879|gb|ADU84626.1| hypothetical protein HPSA_03125 [Helicobacter pylori SouthAfrica7]
          Length = 414

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 175 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 230

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 231 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 265

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 266 --------LTNVDTSSETKMREYYNKHKEQFSIPTEVETVRYTSTNQEDLERAMADPNLE 317

Query: 253 L 253
           +
Sbjct: 318 I 318


>gi|94990712|ref|YP_598812.1| foldase protein PrsA [Streptococcus pyogenes MGAS10270]
 gi|94544220|gb|ABF34268.1| Peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes
           MGAS10270]
          Length = 351

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 78/239 (32%), Gaps = 18/239 (7%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T V+ M    +  S+   +       +   ++ ++            S   + + + K 
Sbjct: 29  NTKVISMKGDTISVSDFYNETKNTEVSQKAMLNLVISRVFEAQYGDKVSKKEVEKAYHKT 88

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT--------- 271
            + Y A     ++         +++I  S     A  E  K++  + E +          
Sbjct: 89  AEQYGASFSAALAQSSLTPETFKRQIRSSKLVEYAVKEAAKKELTTQEYKKAYESYTPTM 148

Query: 272 -VEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSL-SDISLGSFSKEYIPDVSLADS 328
            VE +   N++ A    + LK  G  F  +A+E+  +    ++    S        +  +
Sbjct: 149 AVEMITLDNEETAKSVLEELKAEGADFTAIAKEKTTTPEKKVTYKFDSGATNVPTDVVKA 208

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             SL + G                + I  V+  K      +QE KK +   +   K+ +
Sbjct: 209 ASSLNEGGISDVISVLDPTSYQKKFYIVKVTK-KAEKKSDWQEYKKRLKAIIIAEKSKD 266


>gi|50915078|ref|YP_061050.1| foldase protein PrsA [Streptococcus pyogenes MGAS10394]
 gi|94995221|ref|YP_603319.1| foldase protein PrsA [Streptococcus pyogenes MGAS10750]
 gi|50904152|gb|AAT87867.1| Peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes
           MGAS10394]
 gi|94548729|gb|ABF38775.1| Peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes
           MGAS10750]
          Length = 317

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 22/211 (10%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T +V M    +  S+   +       +   +  ++            S+  + + +++ 
Sbjct: 37  NTKLVSMKGDTITVSDFYNETKNTELAQKAMLSLVISRVFETQYANKVSDKEVEKAYKQT 96

Query: 221 KDNY------------RAPEYKRISYILFDVHEKEKKIEISNDEL-QAEYEKNKEKYFSP 267
            D Y              PE  +    L  + E   K +  N+ + + +Y +  + Y   
Sbjct: 97  ADQYGTSFKTVLAQSGLTPETYKKQIRLTKLVEYAVKEQAKNETISKKDYRQAYDAYTP- 155

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
              T E + F  +++A  A +++K  G  F  +A+E+  +    +  +F        +  
Sbjct: 156 -TMTAEIMQFEKEEDAKAALEAVKAEGADFAAIAKEKTIAADKKTTYTFDSGETTLPAEV 214

Query: 327 DSIFSLAKKGDFT------PVIHGSFGYVIA 351
               S  K+G+ +              Y I 
Sbjct: 215 VRAASGLKEGNRSEIITALDPAISKRTYHII 245


>gi|312867264|ref|ZP_07727474.1| putative peptidylprolyl isomerase PrsA1 [Streptococcus
           parasanguinis F0405]
 gi|311097393|gb|EFQ55627.1| putative peptidylprolyl isomerase PrsA1 [Streptococcus
           parasanguinis F0405]
          Length = 314

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 73/232 (31%), Gaps = 44/232 (18%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFV--------GGMRPSNLLLDQAKRFYFENRSVDYIVL 197
           I+  ++ D          V+             G + S+  +D+      +     +   
Sbjct: 37  ISVSDFYDEIKTNQGAQQVLFQMTINKVFEKEYGSKVSDKEVDKELAKQKKQLGKQF--- 93

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                 A    +     +               R + +L     +  K +I   + +A +
Sbjct: 94  --DAYLAQQGLTEETAKK-------------QIRSNMLLEYAVNQAAKKDIKESDYKAAF 138

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFS 316
           E       +PE+ T + +   ++ +A E  ++ K  G  F Q+A++     +    G   
Sbjct: 139 ESY-----TPEV-TAQIIKLNSEDKAKEVLEAAKAEGADFAQIAKDNSTDTATKDKGGEV 192

Query: 317 KEYIPDVSLA----DSIFSLAKKGDFTPVIHGSFG------YVIAHVSNIKP 358
           K       +     ++ F L + G  + VI  S G      Y I  ++    
Sbjct: 193 KFDSGTAGIPSQVKEAAFKLDENG-ISDVITVSAGQNYSASYYIVKLNKKTE 243


>gi|83814441|ref|YP_445914.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Salinibacter ruber DSM 13855]
 gi|83755835|gb|ABC43948.1| PPIC-type PPIASE domain protein [Salinibacter ruber DSM 13855]
          Length = 685

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/380 (14%), Positives = 123/380 (32%), Gaps = 47/380 (12%)

Query: 284 DEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFT 339
           D     ++ G   F   A E  +     S G    E  P      L  ++ +L   G  +
Sbjct: 290 DSLRTEIRDGPLSFAAAAREYSQDRQSASKGGALGEVTPRALPPPLRKTVAALDSAGAVS 349

Query: 340 PVIHGSFGYVIAHVSNI--KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
            ++   FGY +  + +   +PSF  ++ E+K  +  Q R  + +       +      A 
Sbjct: 350 GIVQTRFGYHLLKLIDRSERPSFDEAYSELKDRLVGQPRAEERTAAFARTVRAEVGAAAD 409

Query: 398 GTSMDEISRREKIVSIDLPLVDF----AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
              +  I+R   + S+  PL+      +G       +    Y    + R   + D  ++ 
Sbjct: 410 TARLLTIARAGSVDSLARPLLTHADTLSGAARPAATLGDSVYTVDQMARHLMQTDGGAQT 469

Query: 454 HTVALPDG-------SYMWVQIKESIPARDRKLEEVL---------------------TD 485
               L +         Y   +  ++ PA  R++++                         
Sbjct: 470 TVAELMESFLNEKALQYAATRRAQTDPALRREVQKYRNGTLLFHYVQDSVWTAAARDTAG 529

Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSK-------EGKNFRDIGKNLGASLLTTNQINRMD 538
           ++K ++  +T  +   +   LVL             +  RD           T+ +   D
Sbjct: 530 LRKTYRQNRTQYQFPERVRTLVLRTPADSVLRPYATRYERDSSITAVLDAAATDSLVSTD 589

Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-DKFISYLTQM 597
                     + +      +     P+ +G  + +F + ++++ P   + ++    + Q 
Sbjct: 590 TVYVTDRSADVYRSARAAADGEAVGPLPHGEEW-LFLIRDARLPPRPMRFEEARRRVVQD 648

Query: 598 MNKDLLDSVIAYLKSQYSVT 617
               L   V+  L+ +Y   
Sbjct: 649 HQDRLERRVLRRLRERYDAE 668



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 82/305 (26%), Gaps = 46/305 (15%)

Query: 271 TVEQLVF---------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS--------LG 313
            V  ++             +EA     S+ +G  F  LA     + +  +          
Sbjct: 161 DVSHILIRPASSSDTLAAYREAQAIADSVGRGVPFGDLALRNSDAPAARTEGRRGYRGRL 220

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
            + +         D ++++   G  + +    FGY I  V + +P+          ++A+
Sbjct: 221 GYLQAGDIVEPFEDRMYAVP-PGGTSDIFRTKFGYHILKVHDRRPAAQP------VELAH 273

Query: 374 QMRITK-----ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
            +R  +     +   +      + +      S    +R              A K     
Sbjct: 274 ILRRPQGDSATSRRLLDSLRTEIRD---GPLSFAAAAREYS------QDRQSASKGGALG 324

Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK-LEEVLTDVK 487
           EV        L   V   D   +    V           + + I   +R   +E  +++K
Sbjct: 325 EVTPRALPPPLRKTVAALDSAGAVSGIVQT----RFGYHLLKLIDRSERPSFDEAYSELK 380

Query: 488 KDWKTV-KTAEEVSSKANQLVLEYSKEGKN--FRDIGKNLGASLLTTNQINRMDNENKFF 544
                  +  E  ++ A  +  E            I +      L    +   D  +   
Sbjct: 381 DRLVGQPRAEERTAAFARTVRAEVGAAADTARLLTIARAGSVDSLARPLLTHADTLSGAA 440

Query: 545 GYDGI 549
                
Sbjct: 441 RPAAT 445


>gi|251782838|ref|YP_002997141.1| foldase protein PrsA [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242391468|dbj|BAH81927.1| peptidyl-prolyl cis-trans isomerase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|323127643|gb|ADX24940.1| foldase protein PrsA [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 355

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 74/239 (30%), Gaps = 18/239 (7%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T V+ M    +  S+   +       +   ++ +V            SN  + + + K 
Sbjct: 29  NTKVISMKGDTISVSDFYNETKHTEVSQKAMLNLVVSRVFEAQYGDKVSNKEVEKAYNKT 88

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT--------- 271
            D Y A     ++         +K+I  S     A  E  K++  +   +          
Sbjct: 89  ADQYGASFSAALAQSSLTPETYKKQIRSSKLVEYAVRETAKKELTTEAYKKAYETYTPTM 148

Query: 272 -VEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI 329
             + +   +++ A    + LK  G  F  +A+E+  +        F        +     
Sbjct: 149 AAQVIALDSEETAKSVLEELKAEGADFAAIAKEKTTAADKKIAYKFDSGATSLPADVVKA 208

Query: 330 FSLAKKGDFT------PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            S  K+GD +              + I  V+  K      ++  KK +   +   K  +
Sbjct: 209 ASGLKEGDMSEVISVLDPATYQNKFYIVKVTK-KAEKKADWKVYKKRLKAIILAEKTRD 266


>gi|326503622|dbj|BAJ86317.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 221

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 7/98 (7%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKE-ADEAFQSLKKGK-KFIQLAEEQG---KSLSDISLG 313
           + K  +  P+   +      +  + A      +  G+ +F   A +      +     LG
Sbjct: 122 RRKASWRDPDGVAISATTRDDAADLARALRDQIAAGELQFDAAARDNSDCNSAKRGGDLG 181

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F K  +       ++ +L K GD + V+    G  I 
Sbjct: 182 PFEKGKMQKP-FEKAVIAL-KVGDMSDVVDTESGVHII 217


>gi|195448338|ref|XP_002071614.1| GK10078 [Drosophila willistoni]
 gi|194167699|gb|EDW82600.1| GK10078 [Drosophila willistoni]
          Length = 167

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQ-----SLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA    +      + +   F +LA        +     LG F +  +   +   
Sbjct: 82  ITRTKEEAQMLLEVYRNKIINEEATFDELARSYSDCSSAKRGGDLGKFGRGDM-QAAFEK 140

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L   G  + ++    G  I 
Sbjct: 141 AAFAL-NVGQMSGIVDTDSGLHII 163


>gi|190347260|gb|EDK39502.2| hypothetical protein PGUG_03600 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 175

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 13/139 (9%)

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQA--EYEKNKEKYFSPEIRTVEQLVFPNQK 281
           +   + K  +YI        K +  S+ +++      K+K+    P        +   + 
Sbjct: 37  FGTDKSKLDAYISQYKERGFKPVVPSDGKIRTSHFLVKHKDS-RRPRSWKSPDGISLTRD 95

Query: 282 EADEAFQS-----LKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333
           EA    +      +   KK  +LAE +    S      LG F K  +   S  ++ F L 
Sbjct: 96  EAIAIAKKYRQQIVNGDKKLSELAEHESDCSSHSQGGDLGFFGKGQM-QPSFEEAAFGLH 154

Query: 334 KKGDFTPVIHGSFGYVIAH 352
             G+ + ++    G  I  
Sbjct: 155 -VGEISDLVESDSGIHIIQ 172


>gi|242212427|ref|XP_002472047.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728870|gb|EED82755.1| predicted protein [Postia placenta Mad-698-R]
          Length = 149

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 27/118 (22%)

Query: 259 KNKEKYFSPEIRTVEQLVFP-----------------NQKEADEAFQSLKK-----GKKF 296
           + +     P       L+                   +++EA E  +  +       ++F
Sbjct: 32  QEQGSGGRPAQVRASHLLVKHRGSRRPSSWKEQNITRSKEEAIEILRGYEAEIDGSPERF 91

Query: 297 IQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            +LA +         D  LGSF    +      D+ ++L   G  + ++    G  + 
Sbjct: 92  GELARQHSDCSSHAKDGDLGSFGPGQMQKP-FEDATYAL-NVGQISDIVDTDSGVHLI 147


>gi|226311741|ref|YP_002771635.1| hypothetical protein BBR47_21540 [Brevibacillus brevis NBRC 100599]
 gi|226094689|dbj|BAH43131.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 246

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/251 (10%), Positives = 69/251 (27%), Gaps = 69/251 (27%)

Query: 21  LFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           L +   + G       + S  + V  +G   +          Q    + +  G       
Sbjct: 44  LVLGLAVAGCTPGKDSAFSADNPVAKIGNVTITQE-------QMYDKLKKDAG------- 89

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                  K+++ ++++     Q     G+      +   +  +P+   K    S + F  
Sbjct: 90  -------KRVMADIITLELYKQEGAARGITVTDQELDARV--NPV-KEKLG--SPERFQQ 137

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L  + + E+E  +    ++ R  +                                   
Sbjct: 138 YLKDKQMTEQELREGVRAVMLRDKL----------------------------------- 162

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNY--RAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                    +   + +++EK KD +     E +           K   +   +  ++  Y
Sbjct: 163 --FEKDNPITEEQIKEYYEKNKDKFEGTFEEARPKVIEKVKSRNKRNNM---DKWIEELY 217

Query: 258 EKNKEKYFSPE 268
           +K+  +    +
Sbjct: 218 KKHNVQIMDKD 228


>gi|316956573|gb|EFV46854.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Trichinella
           spiralis]
          Length = 183

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 275 LVFPNQKEA----DEAFQSLKKGKK-FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLA 326
           ++  ++++A          +  GK  F  LA +      + +   LG F +  +      
Sbjct: 97  VITRSKEDALHLIQAYRDEISSGKAEFRTLASKYSDCSSAKNGGDLGYFKRGQMQKP-FE 155

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIA 351
           ++ F+L   G+ +  +    G  I 
Sbjct: 156 EAAFALT-LGELSQPVETESGIHII 179


>gi|291525353|emb|CBK90940.1| PPIC-type PPIASE domain [Eubacterium rectale DSM 17629]
 gi|291527060|emb|CBK92646.1| PPIC-type PPIASE domain [Eubacterium rectale M104/1]
          Length = 329

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 76/228 (33%), Gaps = 38/228 (16%)

Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE---KYKDNYRAP----- 227
           ++ +D+  R Y          +        +  S A   ++++   + +  +        
Sbjct: 87  DVTVDELTRIYCMVSIAKQKKITLTD-KEKSSVSKAA-KEYYDSLNEAEKKFTKADLSDM 144

Query: 228 ----EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
               E+  I+  L++   K    E+S+++ +              +  ++++   +++ A
Sbjct: 145 ESAYEHYAIAQKLYNSLSKGVDTEVSDEDAR--------------VIHIQKIFVKSKESA 190

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           D   Q L   + F  +A   G S    +    +K  +P   +    F L   G+ + +I 
Sbjct: 191 DSVSQKLLSKEDFAAVAS--GSSEDSQTELYAAKGTLP-QEVEAVAFELG-DGETSDMIS 246

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              GY      +             +     +   +  E+  +DY+  
Sbjct: 247 TDDGYYFIKCISKLDREKT------EQNKVTILQKRQQEQFNDDYEHF 288


>gi|170059343|ref|XP_001865322.1| dodo [Culex quinquefasciatus]
 gi|167878150|gb|EDS41533.1| dodo [Culex quinquefasciatus]
          Length = 159

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 287 FQSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            + ++ G+    +LA++      +     LG F +  +      D+ F+L K GD + V+
Sbjct: 89  RKQIQSGEATLPELAQKYSDCSSAKRGGDLGMFKRG-MMQKPFEDAAFAL-KVGDMSDVV 146

Query: 343 HGSFGYVIA 351
               G  + 
Sbjct: 147 DTDSGVHLI 155


>gi|210134866|ref|YP_002301305.1| hypothetical protein HPP12_0672 [Helicobacter pylori P12]
 gi|210132834|gb|ACJ07825.1| hypothetical protein HPP12_0672 [Helicobacter pylori P12]
          Length = 414

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ RS     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 175 QIQEEQERSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 230

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 231 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 265

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 266 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLE 317

Query: 253 L 253
           +
Sbjct: 318 I 318


>gi|148544489|ref|YP_001271859.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lactobacillus
           reuteri DSM 20016]
 gi|184153854|ref|YP_001842195.1| peptidylprolyl isomerase [Lactobacillus reuteri JCM 1112]
 gi|227363083|ref|ZP_03847219.1| peptidylprolyl isomerase [Lactobacillus reuteri MM2-3]
 gi|325682810|ref|ZP_08162326.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus reuteri MM4-1A]
 gi|148531523|gb|ABQ83522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lactobacillus
           reuteri DSM 20016]
 gi|183225198|dbj|BAG25715.1| peptidylprolyl isomerase [Lactobacillus reuteri JCM 1112]
 gi|227071904|gb|EEI10191.1| peptidylprolyl isomerase [Lactobacillus reuteri MM2-3]
 gi|324977160|gb|EGC14111.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus reuteri MM4-1A]
          Length = 312

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 59/200 (29%), Gaps = 45/200 (22%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           + S+  +   +  YK+ Y +           D +   +   ++   L+ +   N     +
Sbjct: 70  EVSDKQVNAQYNTYKNEYGS-----------DFNAYLQSQNLTEKSLKQQIRSNL--LLT 116

Query: 267 PEIRTVEQL---------------------VFPNQKEADEAFQSLK----KGKKFIQLAE 301
              R    +                     +  ++ +A++    L     K K F +LA+
Sbjct: 117 AAARHYSHITTKQINKQWTKYQPKVQTATILVGSKSDAEDIINQLNDSSNKYKTFKKLAK 176

Query: 302 EQGKSLSDISLGSFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +       + G     +       D +   + F L      T  +    GY + ++   
Sbjct: 177 SKSTDSQTKNNGGKLPAFDNTDNQLDSAYKKAAFKLKTGEYTTTPVKTDDGYQVIYMIEH 236

Query: 357 KPSFTVS--FQEVKKDIANQ 374
                 S    ++K  I  +
Sbjct: 237 PAKGKKSQHINDLKNQIVQE 256



 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 74/230 (32%), Gaps = 36/230 (15%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           G+  V +    K+  S + +S KQ                        K++L  ++    
Sbjct: 23  GNKAVATTSGGKITESEYYSSMKQTSA--------------------GKQVLQQMILDKV 62

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L+   +  G E    +V    A+   +  +        F + L  + + EK         
Sbjct: 63  LE---KQYGKEVSDKQVN---AQYNTYKNEYGS----DFNAYLQSQNLTEKSLKQQIRSN 112

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L  T     +      +  +  Q  ++  + ++   +V +      I +     L     
Sbjct: 113 LLLTAAARHY--SHITTKQINKQWTKYQPKVQTATILVGSKSDAEDIIN----QLNDSSN 166

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           KYK   +  + K       +   K    + ++++L + Y+K   K  + E
Sbjct: 167 KYKTFKKLAKSKSTDSQTKNNGGKLPAFDNTDNQLDSAYKKAAFKLKTGE 216


>gi|320528266|ref|ZP_08029428.1| PPIC-type PPIASE domain protein [Solobacterium moorei F0204]
 gi|320131180|gb|EFW23748.1| PPIC-type PPIASE domain protein [Solobacterium moorei F0204]
          Length = 327

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 87/264 (32%), Gaps = 33/264 (12%)

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAV--LTQWFEKYKDNYRAPEYKRISYILFDVH 240
            +     R++    ++  +    A    A   +  +   Y +NY A     +S   +   
Sbjct: 70  AQLTLFKRAIADASISTTNEIKDAAAKQAESIIANYKNSYGNNYEAKLLSDMSSTGYTDL 129

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----------PNQKEA---DEA 286
           E+    +   ++L AEY   K+ +   +IR V  ++            P + EA      
Sbjct: 130 EEYLIQQQKVNQLTAEYA--KQHFDELKIRQVSYILVKFTDRNNPTAEPTEDEAARMKAV 187

Query: 287 FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEY-IPDVSLADSIFSLAKKGDFTP- 340
              L  G  F  +A +  +  S       LG   K     D +  ++  +L  +G+ +  
Sbjct: 188 DDELAAGDDFATVASKHSEDTSTSVNGGVLGVIDKNTSTLDAAFLEASLAL-NEGEVSKW 246

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-----IANQMRITKASEKVKEDYKRLEEFL 395
           V   +FGY     +    +     +EV  D     +      T +++ +    + L    
Sbjct: 247 VRSSNFGYFKIIANATTQAK---LEEVAGDNPYLTLVQNYDTTLSNQALWAKAEELGIDF 303

Query: 396 ALGTSMDEISRREKIVSIDLPLVD 419
                ++   ++   +  +     
Sbjct: 304 KGNDELENSIKKAMGIKTESEETK 327


>gi|289548356|ref|YP_003473344.1| SurA domain protein [Thermocrinis albus DSM 14484]
 gi|289181973|gb|ADC89217.1| SurA domain protein [Thermocrinis albus DSM 14484]
          Length = 283

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 72/201 (35%), Gaps = 32/201 (15%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
            L++  + F  +GL+           V SV  + +  S                   V+ 
Sbjct: 13  VLLLTALSFWSFGLTLL------DRVVASVNGEPILESE------------------VLL 48

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
            +        KK+LD LV    L Q+ +  G+      V   + +      + N  + + 
Sbjct: 49  GKLFFGSNDRKKVLDKLVEDMLLYQYAQSKGMGVPDQMVDAAVNQI----LQANNLTMEG 104

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV---GGMRPSNLLLDQAKRFYFE-NRSV 192
               L+++G++ ++  +   + +  T  +   +     ++  ++ L++ KR   +  R +
Sbjct: 105 LAKELSKDGLSLEDLKNFLRREILATQGITALLLRETKVQDIDVELEKLKRGMIKVKREI 164

Query: 193 DYIVLNNRHVPAIADPSNAVL 213
             + ++      + + +   L
Sbjct: 165 SVLTVDKAKGKKLLELTEKGL 185


>gi|242207385|ref|XP_002469546.1| predicted protein [Postia placenta Mad-698-R]
 gi|220731350|gb|EED85195.1| predicted protein [Postia placenta Mad-698-R]
          Length = 143

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 27/111 (24%)

Query: 266 SPEIRTVEQLVFP-----------------NQKEADEAFQSLKK-----GKKFIQLAEEQ 303
           + E      L+                   +++EA E  +  +       ++F +LA + 
Sbjct: 31  TQEQVRASHLLVKHRGSRRPSSWKEQNITRSKEEAIEILRGYEAEIDGSPERFGELARQH 90

Query: 304 GKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
                   D  LGSF    +      D+ ++L   G  + ++    G  + 
Sbjct: 91  SDCSSHAKDGDLGSFGPGQMQKP-FEDATYAL-NVGQISDIVDTDSGVHLI 139


>gi|116208446|ref|XP_001230032.1| hypothetical protein CHGG_03516 [Chaetomium globosum CBS 148.51]
 gi|88184113|gb|EAQ91581.1| hypothetical protein CHGG_03516 [Chaetomium globosum CBS 148.51]
          Length = 181

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 39/161 (24%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQ------AEYEKNKE------KYFSPEIRTVEQLV 276
            K + Y    V +  +    +  + +      AEY  NK       +   P       L+
Sbjct: 20  SKNLPYYFNSVEKVSRWEPPAETDTEKLKLYMAEYHSNKGLAAGTGEDRQPGKIRAAHLL 79

Query: 277 FP-----------------NQKEADEA----FQSLKKGK-KFIQLA---EEQGKSLSDIS 311
                               +++A E        +K G+    QLA    +   +     
Sbjct: 80  VKHRDSRRPSSWRENTITRTKEDAYEIIKAHEARIKGGEVSLGQLALTESDCSSARKQGD 139

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           LG F +  +      D+ F+L + G+ + ++  + G  +  
Sbjct: 140 LGFFGRGDM-QKEFEDAAFALRE-GEVSGIVDTASGLHLIE 178


>gi|194273637|gb|ACF39177.1| putative parvulin [Francisella novicida]
          Length = 88

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLAD 327
              L+  ++ E  +  + + +GK  F + A +     S      LG+FS+  +       
Sbjct: 1   ARHLLVQSESECQQIKKDITEGKITFEEAARKHSLCPSGARGGDLGTFSQGQMV-PEFDR 59

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +F+  +       +   FGY +  +++ 
Sbjct: 60  VVFN-DELHTVHGPVQTQFGYHLLEITSR 87


>gi|149927433|ref|ZP_01915688.1| hypothetical protein LMED105_01067 [Limnobacter sp. MED105]
 gi|149823925|gb|EDM83150.1| hypothetical protein LMED105_01067 [Limnobacter sp. MED105]
          Length = 267

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 64/204 (31%), Gaps = 37/204 (18%)

Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
               + R V  +      +  IA P+ A L  W  +    Y+  +     +  F   ++ 
Sbjct: 86  DLIVKRRVVQKMRFLLEDMTPIAPPTEAQLQTWLGQNAQRYQTEQTIVFDHHFFSRGKRG 145

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
                     +A Y     +      + V    FP Q +++   +         ++A+E 
Sbjct: 146 D---------EAFYHAGIARDDLLAGQKVTSDPFPLQTDSELLSRE--------RIAKEF 188

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                    G  +   I D+ L +           +P +    G  +  VS      T++
Sbjct: 189 ---------GVITSATIFDLPLDEW----------SPPVQSPLGVHLFKVSQKNAGRTMT 229

Query: 364 FQEVKKDIANQMRITKASEKVKED 387
            +E    + + +   +  E V + 
Sbjct: 230 LEEAGSQLRSDLIAAQ-REAVNDA 252


>gi|302842666|ref|XP_002952876.1| hypothetical protein VOLCADRAFT_82005 [Volvox carteri f.
           nagariensis]
 gi|300261916|gb|EFJ46126.1| hypothetical protein VOLCADRAFT_82005 [Volvox carteri f.
           nagariensis]
          Length = 253

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 275 LVFPNQKEADEAFQSLKK-----GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLA 326
           +V   ++EA    Q   K        F  LA ++     +     LG F +  +      
Sbjct: 167 VVTRTREEALAMIQRFHKMLVSGEADFATLASQESHCSSAKRGGDLGEFGRGDMQKP-FE 225

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIA 351
           D+ ++L K G+ +  +    G  + 
Sbjct: 226 DATYAL-KVGELSGPVFSDSGVHLI 249


>gi|56708512|ref|YP_170408.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89256686|ref|YP_514048.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica LVS]
 gi|110670983|ref|YP_667540.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315096|ref|YP_763819.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|118497285|ref|YP_898335.1| parvulin-like peptidyl-prolyl isomerase domain-containing protein
           [Francisella tularensis subsp. novicida U112]
 gi|134301685|ref|YP_001121653.1| peptidyl-prolyl cis-trans isomerase C [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|156502846|ref|YP_001428911.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167010492|ref|ZP_02275423.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|187931510|ref|YP_001891494.1| parvulin-like peptidyl-prolyl isomerase domain [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|194323588|ref|ZP_03057365.1| ppic-type ppiase domain protein, putative [Francisella tularensis
           subsp. novicida FTE]
 gi|208779078|ref|ZP_03246424.1| ppic-type ppiase domain protein, putative [Francisella novicida
           FTG]
 gi|224457677|ref|ZP_03666150.1| parvulin-like peptidyl-prolyl isomerase domain [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254369547|ref|ZP_04985558.1| hypothetical protein FTAG_01432 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254371139|ref|ZP_04987141.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875361|ref|ZP_05248071.1| peptidyl-prolyl cis-trans isomerase C [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|290954279|ref|ZP_06558900.1| peptidyl-prolyl cis-trans isomerase C [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312306|ref|ZP_06803095.1| peptidyl-prolyl cis-trans isomerase C [Francisella tularensis
           subsp. holarctica URFT1]
 gi|11228666|gb|AAG33118.1|AF240631_1 putative peptidyl-prolyl cis-trans isomerase [Francisella
           tularensis subsp. tularensis]
 gi|11228669|gb|AAG33119.1|AF247642_1 putative peptidylprolyl isomerase [Francisella tularensis subsp.
           holarctica]
 gi|11228672|gb|AAG33120.1|AF247685_1 putative parvulin [Francisella tularensis subsp. mediasiatica]
 gi|11228676|gb|AAG33122.1|AF247687_1 putative parvulin [Francisella tularensis subsp. holarctica]
 gi|11228678|gb|AAG33123.1|AF247688_1 putative parvulin [Francisella novicida]
 gi|11228680|gb|AAG33124.1|AF247689_1 putative parvulin [Francisella tularensis subsp. tularensis]
 gi|11228682|gb|AAG33125.1|AF247690_1 putative parvulin [Francisella tularensis subsp. holarctica]
 gi|21952446|gb|AAM82565.1|AF524865_1 peptidyl-prolyl trans isomerase [Francisella tularensis subsp.
           tularensis]
 gi|56605004|emb|CAG46105.1| Peptidyl-prolyl cis-trans isomerase. [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144517|emb|CAJ79832.1| Peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica LVS]
 gi|110321316|emb|CAL09488.1| Peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115129995|gb|ABI83182.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|118423191|gb|ABK89581.1| parvulin-like peptidyl-prolyl isomerase domain [Francisella
           novicida U112]
 gi|134049462|gb|ABO46533.1| peptidyl-prolyl cis-trans isomerase C [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|151569379|gb|EDN35033.1| hypothetical protein FTBG_00899 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|156253449|gb|ABU61955.1| peptidyl-prolyl cis-trans isomerase domain protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|157122501|gb|EDO66636.1| hypothetical protein FTAG_01432 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712419|gb|ACD30716.1| parvulin-like peptidyl-prolyl isomerase domain [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|194322443|gb|EDX19924.1| ppic-type ppiase domain protein, putative [Francisella tularensis
           subsp. novicida FTE]
 gi|208744878|gb|EDZ91176.1| ppic-type ppiase domain protein, putative [Francisella novicida
           FTG]
 gi|254841360|gb|EET19796.1| peptidyl-prolyl cis-trans isomerase C [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282159725|gb|ADA79116.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           tularensis NE061598]
 gi|328676774|gb|AEB27644.1| Peptidyl-prolyl cis-trans isomerase ppiC [Francisella cf. novicida
           Fx1]
          Length = 92

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLAD 327
              L+  ++ E  +  + + +GK  F + A +     S      LG+FS+  +       
Sbjct: 5   ARHLLVQSESECQQIKKDITEGKITFEEAARKHSLCPSGARGGDLGTFSQGQMV-PEFDR 63

Query: 328 SIFS--LAKKGDFTPVIHGSFGYVIAHVSNI 356
            +F+  L K       +   FGY +  +++ 
Sbjct: 64  VVFNDELHK---VHGPVQTQFGYHLLEITSR 91


>gi|85710398|ref|ZP_01041462.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1]
 gi|85687576|gb|EAQ27581.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1]
          Length = 448

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/368 (12%), Positives = 113/368 (30%), Gaps = 24/368 (6%)

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
           +E E  D   + L    +  +    ++       +      E     Y  L  ++     
Sbjct: 82  SEVEVSDAERQRLRVQVLRNLIDETLKIQAARAQEIGVERAE-VEQTYQQLAAQNFGQNP 140

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           +  +  L           +      I++           + +S +E+    E+ +E   +
Sbjct: 141 ERMDEYLAS-IGSSPAALKRQIEGEIAWENLIRRNISPFVNVSAEEVTGVLERLEEARGT 199

Query: 267 PEIRTVEQLVFPNQKEADEAFQ-------SLKKGKKFIQLAE---EQGKSLSDISLGSFS 316
            E R  E  +   ++  +   Q        L+ G  F+  A    E   ++     G   
Sbjct: 200 EEYRLGEIYMNATEENREAVIQNMQRIMEQLEAGGSFVAYARQFSEASTAVQGGDTGFLR 259

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQM 375
              +P   +AD+   + + G     I    G+ I ++ + +   T      V       +
Sbjct: 260 LATLPGP-MADAARQM-QPGQLVGPIAIPGGFTIIYMIDRRQVLTADPRDSVLSLKQISI 317

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
              + + + + +  ++EEF     S+   +  E   S+           V   ++ A   
Sbjct: 318 AFDQGTSEAEANA-KIEEFGLFIQSLRSCNEAETARSV------LGATVVTNDQIQARQL 370

Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA--RDRKLEEVLTDVKKDWKTV 493
            EQL   +       +     +  +G  + +      P        + V+T+++ +    
Sbjct: 371 PEQLQNILLNMQVGQTTPPFGSAQEGVRVLMLCGRDEPEDSGTPTFQTVMTNIESERINK 430

Query: 494 KTAEEVSS 501
           +    +  
Sbjct: 431 RAQRYLRD 438



 Score = 43.8 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 42/172 (24%), Gaps = 10/172 (5%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V    +  +                    V    A    L  ++L NL+      Q  
Sbjct: 59  AVVNGFVITGTDIDQRVALVTNA------SEVEVSDAERQRLRVQVLRNLIDETLKIQAA 112

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RT 162
               +  +   V     +      ++   + +     LA  G +           ++   
Sbjct: 113 RAQEIGVERAEVEQTYQQLAA---QNFGQNPERMDEYLASIGSSPAALKRQIEGEIAWEN 169

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
            +       +  S   +        E R  +   L   ++ A  +   AV+ 
Sbjct: 170 LIRRNISPFVNVSAEEVTGVLERLEEARGTEEYRLGEIYMNATEENREAVIQ 221


>gi|164425892|ref|XP_963036.2| peptidyl-prolyl cis-trans isomerase ssp-1 [Neurospora crassa OR74A]
 gi|189046952|sp|O60045|SSP1_NEUCR RecName: Full=Peptidyl-prolyl cis-trans isomerase ssp-1;
           Short=PPIase ssp-1
 gi|157071110|gb|EAA33800.2| peptidyl-prolyl cis-trans isomerase ssp-1 [Neurospora crassa OR74A]
          Length = 182

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAFQ----SLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA    Q     +K G     +LA    +   +     LG F +  +      D
Sbjct: 97  ITRTKQEALTTLQGFEQRIKSGSISLGELALTESDCSSARKRGDLGYFGRGDM-QKEFED 155

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L K G+ + ++  + G  +  
Sbjct: 156 AAFAL-KPGEISGIVDTASGLHLIE 179


>gi|152991657|ref|YP_001357378.1| hypothetical protein SUN_0061 [Sulfurovum sp. NBC37-1]
 gi|151423518|dbj|BAF71021.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 245

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 65/182 (35%), Gaps = 26/182 (14%)

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
             L    +K  D  +    +++ ++ +D +E       S++ L+   +++ EKY   E  
Sbjct: 80  EALKIGLDKNDDEIKRRLAQKMEFVAYDTYELPDP---SDEVLKKFMQEHLEKYREDEKI 136

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
              Q +                G    +  +E        +L  F    I   + +D +F
Sbjct: 137 HFTQNMM---------------GSDAAEFEKEY-------TLTKFEASNIFGRAFSDMLF 174

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +L   G    +   ++G     V +       +F  VK+ +       +  +K K  Y++
Sbjct: 175 TLKADGKVHKI-ESTYGVHDVRVIDRPTPKPKTFDAVKEKLKGDYLNAEREQKNKAIYEK 233

Query: 391 LE 392
           L+
Sbjct: 234 LK 235


>gi|289677225|ref|ZP_06498115.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae FF5]
          Length = 78

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
           T   ++  ++++ +E    ++ G  F ++A+      S      LGSF    +       
Sbjct: 3   TARHILVSSEEKCNELKAQIEGGADFAEIAKANSSCPSSRQGGDLGSFGPGQMVK-EFDT 61

Query: 328 SIFSLAKKGDFTPVIHGS 345
            +FS A        +   
Sbjct: 62  VVFS-APVNTVQGPVKTQ 78


>gi|108563069|ref|YP_627385.1| hypothetical protein HPAG1_0644 [Helicobacter pylori HPAG1]
 gi|107836842|gb|ABF84711.1| hypothetical protein HPAG1_0644 [Helicobacter pylori HPAG1]
          Length = 414

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 61/181 (33%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 175 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 230

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 231 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 265

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y      + E+ +   N E
Sbjct: 266 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTSQEDLERAMADPNLE 317

Query: 253 L 253
           +
Sbjct: 318 I 318


>gi|255627135|gb|ACU13912.1| unknown [Glycine max]
          Length = 126

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 13/102 (12%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQLAE---EQGKSLSDI 310
           + K  +  PE R    +    ++ A    ++L+         F  +A    +   +    
Sbjct: 27  RRKASWKDPEGR---IIKSTTRENAVSQLKALRDDIVSGKATFEDIASRFSDCSSAKRGG 83

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            LG F +  +      ++ F+L K G  + ++    G  I  
Sbjct: 84  DLGPFGRGQMQKP-FEEATFAL-KIGGISDIVDTDSGVHIIK 123


>gi|167950937|ref|ZP_02538011.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 125

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 52/118 (44%), Gaps = 8/118 (6%)

Query: 441 FRVFGKDDPL--SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
              F +D  +  +    + L     + +++ +   A  + L+EV  ++ +  +  + AE+
Sbjct: 2   AAAFSEDVLVEHNNSEVIELDQTRSLVLRVVDHQEASLKALDEVKAEIIETIRQQQAAEK 61

Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
             ++A + + +  + G++   +  +      +T Q++ +    +   Y  +S +FS P
Sbjct: 62  AKAEAEKRLAQL-QAGESIEAVAGDY-----STKQLSGVKRSERGVLYSLLSDIFSAP 113


>gi|308061989|gb|ADO03877.1| hypothetical protein HPCU_03575 [Helicobacter pylori Cuz20]
          Length = 403

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 164 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 219

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 220 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 254

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 255 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLE 306

Query: 253 L 253
           +
Sbjct: 307 I 307


>gi|227485002|ref|ZP_03915318.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236999|gb|EEI87014.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 302

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 98/340 (28%), Gaps = 92/340 (27%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV-VNSERARSVG----LDKKIL 90
           S   ++++  V  + +   SF    +  L   ++K G   + S+ A+       L   +L
Sbjct: 27  SKDEANSIAIVDGKSIAKQSFDKELEFYLAFYTKKYGDSYLESKNAKGKTNKEILRDDLL 86

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
           D+++    +   + D  +E D      ++        +      +   + +    ++E +
Sbjct: 87  DSMIKDQVMLNDLADKKIEIDDNT-ANKLRSDME--KELG--DKNSLKANIKALNMSEAD 141

Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
           + D       R      F+                                        +
Sbjct: 142 FSDVIFNDSIRKMHYEYFL----------------------------------THNKIKD 167

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
           + + Q+++                                +EL   Y+ N          
Sbjct: 168 SEILQYYKAN------------------------------EELHKMYKYNV--------- 188

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
               LVF  ++  +E    +K    F Q  +   K+   I+       YI D  L  S  
Sbjct: 189 ----LVFDTKEACEEVKAKIKNQVDFRQALKSPVKNFDVINSDFV---YIDDPLLVKS-- 239

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            L +K   + +   +  ++I  +++   +      + K  
Sbjct: 240 KLKEKDKVSDIFEDNNKFMILMINSYNENENELLMQTKDK 279


>gi|256003621|ref|ZP_05428610.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 2360]
 gi|281416651|ref|ZP_06247671.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|255992412|gb|EEU02505.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 2360]
 gi|281408053|gb|EFB38311.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|316939760|gb|ADU73794.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 1313]
          Length = 368

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 78/224 (34%), Gaps = 30/224 (13%)

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK---------EKKIEI 248
           + R      +  N       +  K  Y    Y  I Y  +              E ++ I
Sbjct: 132 DYREFLKELENENRQRKDALKSNKVVYGPDNYGEIEYFNYSFDNMVSKLKEKLKENELSI 191

Query: 249 SNDELQAEYEKNKE-KYFSPEIRTVEQLVF---------------PNQKEADEAFQSLKK 292
             ++L++ Y   K+ ++  P+   ++ +                   + + +EA + +  
Sbjct: 192 PEEKLESMYNLLKDTRFKLPDDIKIQVISIGFTDEKGIINDDLKSKARVKIEEAKKRIDN 251

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSFGY 348
           G+ F ++A +       +      ++ +        L D    L K G  + +I  S  +
Sbjct: 252 GEPFEEVALDYNPKSGVLEYVFTKEKQMAKDISHPELLDEALKL-KPGQVSEIIERSTDF 310

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           V+      K +  + +++ +K + +++      E + +  ++ +
Sbjct: 311 VLILCKEKKSTGYLPYKDARKQLLDELIEKDYQEYIDKLVEQAD 354



 Score = 36.9 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 9/155 (5%)

Query: 480 EEVLTDVKKDWKTVK---TAEEVSSKAN---QLVLEYSKEGKNFRDIGKNLGAS--LLTT 531
           +++   V     T +     +++ SKA    +   +    G+ F ++  +      +L  
Sbjct: 212 DDIKIQVISIGFTDEKGIINDDLKSKARVKIEEAKKRIDNGEPFEEVALDYNPKSGVLEY 271

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
                          + + +        V      +    ++        G +  KD   
Sbjct: 272 VFTKEKQMAKDISHPELLDEALKLKPGQVSEIIERSTDFVLILCKEKKSTGYLPYKDARK 331

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
             L +++ KD     I  L  Q  V +++ L +R 
Sbjct: 332 QLLDELIEKD-YQEYIDKLVEQADVKINEKLYRRI 365


>gi|15675314|ref|NP_269488.1| foldase protein PrsA [Streptococcus pyogenes M1 GAS]
 gi|21910595|ref|NP_664863.1| foldase protein PrsA [Streptococcus pyogenes MGAS315]
 gi|28895716|ref|NP_802066.1| foldase protein PrsA [Streptococcus pyogenes SSI-1]
 gi|71903789|ref|YP_280592.1| foldase protein PrsA [Streptococcus pyogenes MGAS6180]
 gi|71910946|ref|YP_282496.1| foldase protein PrsA [Streptococcus pyogenes MGAS5005]
 gi|94988810|ref|YP_596911.1| foldase protein PrsA [Streptococcus pyogenes MGAS9429]
 gi|94992696|ref|YP_600795.1| foldase protein PrsA [Streptococcus pyogenes MGAS2096]
 gi|94994636|ref|YP_602734.1| foldase protein PrsA [Streptococcus pyogenes MGAS10750]
 gi|139473576|ref|YP_001128292.1| foldase protein PrsA [Streptococcus pyogenes str. Manfredo]
 gi|209559624|ref|YP_002286096.1| foldase protein PrsA [Streptococcus pyogenes NZ131]
 gi|306827096|ref|ZP_07460393.1| peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes ATCC
           10782]
 gi|46396700|sp|P60751|PRSA1_STRP3 RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|46396705|sp|P60811|PRSA1_STRP1 RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|13622493|gb|AAK34209.1| putative protease maturation protein [Streptococcus pyogenes M1
           GAS]
 gi|21904796|gb|AAM79666.1| putative protease maturation protein [Streptococcus pyogenes
           MGAS315]
 gi|28810965|dbj|BAC63899.1| putative protease maturation protein [Streptococcus pyogenes SSI-1]
 gi|71802884|gb|AAX72237.1| peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes
           MGAS6180]
 gi|71853728|gb|AAZ51751.1| peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes
           MGAS5005]
 gi|94542318|gb|ABF32367.1| peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes
           MGAS9429]
 gi|94546204|gb|ABF36251.1| Peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes
           MGAS2096]
 gi|94548144|gb|ABF38190.1| Peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes
           MGAS10750]
 gi|134271823|emb|CAM30057.1| foldase protein PrsA 1 precursor [Streptococcus pyogenes str.
           Manfredo]
 gi|209540825|gb|ACI61401.1| Foldase protein prsA 1 precursor [Streptococcus pyogenes NZ131]
 gi|304430730|gb|EFM33742.1| peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes ATCC
           10782]
          Length = 351

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 78/239 (32%), Gaps = 18/239 (7%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T V+ M    +  S+   +       +   ++ ++            S   + + + K 
Sbjct: 29  NTKVISMKGDTISVSDFYNETKNTEVSQKAMLNLVISRVFEAQYGDKVSKKEVEKAYHKT 88

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT--------- 271
            + Y A     ++         +++I  S     A  E  K++  + E +          
Sbjct: 89  AEQYGASFSAALAQSSLTPETFKRQIRSSKLVEYAVKEAAKKELTTQEYKKAYESYTPTM 148

Query: 272 -VEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSL-SDISLGSFSKEYIPDVSLADS 328
            VE +   N++ A    + LK  G  F  +A+E+  +    ++    S        +  +
Sbjct: 149 AVEMITLDNEETAKSVLEELKAEGADFTAIAKEKTTTPEKKVTYKFDSGATNVPTDVVKA 208

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             SL + G                + I  V+  K      +QE KK +   +   K+ +
Sbjct: 209 ASSLNEGGISDVISVLDPTSYQKKFYIVKVTK-KAEKKSDWQEYKKRLKAIIIAEKSKD 266


>gi|330842375|ref|XP_003293155.1| hypothetical protein DICPUDRAFT_157953 [Dictyostelium purpureum]
 gi|325076555|gb|EGC30332.1| hypothetical protein DICPUDRAFT_157953 [Dictyostelium purpureum]
          Length = 252

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAFQSLKK----GK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA       KK    GK KF  LA++      +     LG F +  +      +
Sbjct: 167 ITRTKEEAIAQLLEYKKMIDSGKNKFEDLAKKYSDCSSAKRGGDLGHFKRGQMQKP-FEN 225

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
             FSL + G  + ++    G  I  
Sbjct: 226 CSFSL-QVGQISDIVDTDSGVHIIQ 249


>gi|183219611|ref|YP_001837607.1| putative signal peptide [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909750|ref|YP_001961305.1| hypothetical protein LBF_0181 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774426|gb|ABZ92727.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778033|gb|ABZ96331.1| Conserved hypothetical protein; putative signal peptide [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 349

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/378 (12%), Positives = 110/378 (29%), Gaps = 81/378 (21%)

Query: 16  IFLVVLFVPFLIWGLSDALFSVSGSSTV-VSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           +F+    V   +   ++ L S    + V   VG + +    +    ++   +        
Sbjct: 12  VFIFAAVVSVSLTVPTNPLGSYESLNAVLAIVGPKSISTLDYEEGVERYKNLSR------ 65

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
                 +   L  +++D L+  A +D   ++  ++ +  R+  EI +     G       
Sbjct: 66  FFPNYRKKGSLHSQVIDFLIDRAVVDNVADEESIQVNEKRIEAEIQKRMEAQGIS---DL 122

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           + F   +  +                             P ++ LD      ++ +    
Sbjct: 123 EQFKKSVQSQ--------------------------FNLPYDVWLD---DLPYQIKKGQL 153

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
           + +          PS   +  W+ K K   +     +   ++F             +E +
Sbjct: 154 LQIKVSP----PLPSEQEVQSWYNKNKA--KVGNEFKFRELVFSPANGSI-----EEESR 202

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQLAEEQGKSLSD 309
              E  + +  S +  +  +LV    +  +E+   L  G       F     +   +   
Sbjct: 203 LFNELTEIRNKSLQDPSFFKLVASGPR--NESRYRLNGGLVNYVPTFELYKTQPTTASVL 260

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS-FGYVIAHVSNIKPSFTVSFQEVK 368
             +G                     +G F+ V       Y + ++  ++P        V+
Sbjct: 261 AQVGG--------------------QGKFSEVFRDDRKRYCLVYIEGMRP---TPLDAVR 297

Query: 369 KDIANQMRITKASEKVKE 386
           K I   +   K     +E
Sbjct: 298 KGIQGFLFREKEQTSFEE 315


>gi|283954909|ref|ZP_06372425.1| hypothetical protein C414_000260181 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793749|gb|EFC32502.1| hypothetical protein C414_000260181 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 271

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 73/231 (31%), Gaps = 59/231 (25%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
           + + F  +  +    + + ++  V V ++ +       +                     
Sbjct: 4   ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTM-------------------- 41

Query: 81  RSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           + + +D+ K L  L++       ++ +G+  +   +   I +        NK + + F +
Sbjct: 42  KVLKIDRNKALGILINEKMEISQMKQLGIVVNDLELDDAINKM----LAQNKTTLNAFKA 97

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L  +  + +++  ++ K L +  +                                   
Sbjct: 98  NLKSKNQSYEQFRTNFKKDLEKRKLYEKIAS----------------------------- 128

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
               A  D S+    ++FE+ KD +       ++  L +  +  + I+ + 
Sbjct: 129 ---MAKTDFSDDGAKKFFEQNKDKFTFYTQINVNIYLSNNPQTLENIKNTK 176



 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 73/179 (40%), Gaps = 19/179 (10%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +E+++ N++    KR  Y          K + S+D  +  +E+NK+K+       V   +
Sbjct: 106 YEQFRTNFKKDLEKRKLYEKI---ASMAKTDFSDDGAKKFFEQNKDKFTFYTQINVNIYL 162

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             N +      +++K  KK    ++    + S+                   + S    G
Sbjct: 163 SNNPQT----LENIKNTKKITLKSQNASLNTSNADPRLLG------------LLSQIPNG 206

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
            F+PV++G  GY +  V N   + T  +++VK ++ N     +    +++ + +L   +
Sbjct: 207 GFSPVLNGKNGYELYEVKNKDGAQTPEYKQVKNEVLNAYVSEQRQNFIQDYFDKLRSKI 265


>gi|317014080|gb|ADU81516.1| hypothetical protein HPGAM_03410 [Helicobacter pylori Gambia94/24]
          Length = 415

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 176 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 231

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 232 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 266

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 267 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLE 318

Query: 253 L 253
           +
Sbjct: 319 V 319


>gi|189461628|ref|ZP_03010413.1| hypothetical protein BACCOP_02287 [Bacteroides coprocola DSM 17136]
 gi|189431658|gb|EDV00643.1| hypothetical protein BACCOP_02287 [Bacteroides coprocola DSM 17136]
          Length = 457

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/383 (13%), Positives = 104/383 (27%), Gaps = 88/383 (22%)

Query: 25  FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
            L+ G+S    +      V  VG + +  S   N             G            
Sbjct: 15  LLLAGVSVYAQNNVIDEVVWVVGDEAILKSDVENERLNAQYENRHFDGDPYC-------- 66

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
               I + L          E   +      V  E+ +                ++ LA +
Sbjct: 67  ---VIPEELAIQKLYLHQAEIDSVMVSDQEVIQEVEQR---------------IAWLADQ 108

Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
             ++++  ++Y K    T +  M    ++    ++   ++                    
Sbjct: 109 IGSKEKMEEYYNKSY--TQIREMLRENVKSQKTVVQMQQKIVG----------------- 149

Query: 205 IADPSNAVLTQWFEKYKDNYR--APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
               + A +  +F K   +     P    +  I  +        +IS +E++        
Sbjct: 150 DIKLTPAEVRNYFSKLPQDSIPFIPTQVEVQIITQEP-------KISEEEIE-------- 194

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIP 321
                  R   QL         E    + KG+  F  LA    +       G        
Sbjct: 195 -------RVKSQL--------REYADRVNKGETSFSTLARFYSEDPGTARRGGEGGFTGR 239

Query: 322 D---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-------VSFQEVKKDI 371
                  A+ +F+L      + V    FGY IA +   +               + K   
Sbjct: 240 GELVPEFANVVFNLTDTKKVSKVFETEFGYHIAQLIEKRGDRVNYRHILLRPKVDQKDID 299

Query: 372 ANQMRITKASEKVKEDYKRLEEF 394
           A   R+   ++ ++++    ++ 
Sbjct: 300 AALARLDSIADDIRKNKFTFDDA 322


>gi|327277093|ref|XP_003223300.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1-like [Anolis carolinensis]
          Length = 92

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 288 QSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           Q +K G+  F  LA +      + +   LG+F +  +      D+ F+L + G+ +  + 
Sbjct: 23  QKIKSGEEDFETLASQFSDCSSAKAGGDLGTFGRGQMQKP-FEDASFAL-RTGEMSGPVF 80

Query: 344 GSFGYVIA 351
              G  I 
Sbjct: 81  TDSGIHII 88


>gi|159162752|pdb|1NMW|A Chain A, Solution Structure Of The Ppiase Domain Of Human Pin1
          Length = 114

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 273 EQLVFPNQKEADEAF----QSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
           ++ +   ++EA E      Q +K G+  F  LA +      + +   LG+FS+  +    
Sbjct: 26  QEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKP- 84

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIA 351
             D+ F+L + G+ +  +    G  I 
Sbjct: 85  FEDASFAL-RTGEMSGPVFTDSGIHII 110


>gi|319796618|ref|YP_004158258.1| sura domain [Variovorax paradoxus EPS]
 gi|315599081|gb|ADU40147.1| SurA domain [Variovorax paradoxus EPS]
          Length = 469

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/378 (12%), Positives = 113/378 (29%), Gaps = 49/378 (12%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
             ++ R  +      G++  ++ +DQA++       +  + L  R        ++     
Sbjct: 108 RLIVERAQLQLAKENGIKVDDVAIDQAEQTVARQNEISLVELRRRVAAEGIALAD----- 162

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT---V 272
                   +R     ++        E E K++IS+ E        +             +
Sbjct: 163 --------FRKDLRDQLLLTRLRDREVESKVKISDSEADEYLRDQRNSNTKNAALQNLNL 214

Query: 273 EQLVFPNQKEADE------------AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK--E 318
            Q++    + A +              +  + G+ F +L  E   S    + G+      
Sbjct: 215 AQVLVVLPENATDAQVAAAQKKAQGLAERARAGEDFEKLVRENSDSPDRANGGAIGMRSA 274

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
                   D++ S A  G     +  S G+ +  V       ++     +  + + + + 
Sbjct: 275 DRYPPLFVDAVQSTAVNG-IAGPVRSSAGFHVLKVLAKAQIGSLDATVTQTQVRHILLLN 333

Query: 379 KASEKVKEDYKRLEEF----LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
                  +   +L EF     A       ++R     +         G     +    +P
Sbjct: 334 DPKRTTAQAVAQLAEFKRRVQAGTADFAGLARDNSQDA----SAKEGGDLGWSRPGQFVP 389

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL--EEVLTDVKKDWKT 492
             E+ + R+            ++ P  S   V + + +  RD KL   E     +   + 
Sbjct: 390 EFEEAMDRL--------SPGQISDPVVSRFGVHLIQVVGRRDSKLTQSEQREAARNVLRE 441

Query: 493 VKTAEEVSSKANQLVLEY 510
            +  E  ++   ++    
Sbjct: 442 QRIEEAFTTWVQEVRARA 459



 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 12/143 (8%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +  +            +++ I    ++ER     L + +L+ L+      Q 
Sbjct: 66  VALVNSEPITNTDVQ-------SRVTRLIKENPDAERVPRGELTRLVLERLIVERAQLQL 118

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            ++ G++ D   +            + N+ S      R+A EGI   ++       L  T
Sbjct: 119 AKENGIKVDDVAIDQAEQTV----ARQNEISLVELRRRVAAEGIALADFRKDLRDQLLLT 174

Query: 163 DVVGM-FVGGMRPSNLLLDQAKR 184
            +        ++ S+   D+  R
Sbjct: 175 RLRDREVESKVKISDSEADEYLR 197


>gi|207093124|ref|ZP_03240911.1| hypothetical protein HpylHP_10109 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 331

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 92  QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 147

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 148 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 182

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 183 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLE 234

Query: 253 L 253
           +
Sbjct: 235 I 235


>gi|207109059|ref|ZP_03243221.1| hypothetical protein HpylH_06914 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 240

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 79  QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 134

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 135 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 169

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 170 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLE 221

Query: 253 L 253
           +
Sbjct: 222 I 222


>gi|3127915|emb|CAA06818.1| peptidylprolyl isomerase [Neurospora crassa]
          Length = 182

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAFQ----SLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA    Q     +K G     +LA    +   +     LG F +  +      D
Sbjct: 97  ITRTKQEALTTLQGFEQRIKSGSISLGELALTESDCSSARKRGDLGYFGRGDM-QKEFED 155

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L K G+ + ++  + G  +  
Sbjct: 156 AAFAL-KPGEISDIVDTASGLHLIE 179


>gi|317177476|dbj|BAJ55265.1| hypothetical protein HPF16_0668 [Helicobacter pylori F16]
          Length = 419

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 180 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 235

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 236 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 270

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 271 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLE 322

Query: 253 L 253
           +
Sbjct: 323 V 323


>gi|224417667|ref|ZP_03655673.1| hypothetical protein HcanM9_00172 [Helicobacter canadensis MIT
           98-5491]
 gi|253827018|ref|ZP_04869903.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141212|ref|ZP_07803405.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253510424|gb|EES89083.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130243|gb|EFR47860.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 282

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/373 (11%), Positives = 104/373 (27%), Gaps = 114/373 (30%)

Query: 22  FVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
            + F++  +S A  + S  + +   V    V          Q+   + Q +         
Sbjct: 9   LLSFVV--ISHAFGAPSLVNGIAFFVNGNPVTLLDVYKV--QQRDKVEQNL--------- 55

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
                    +D L++    ++ I+   + A    +  EI+       + N+ + +   S 
Sbjct: 56  --------AVDILINEKLHEEEIKKHKIVATELELNDEISAI----ARQNQTTPEQLESY 103

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           +   G N + Y +   K + +  +  +                                 
Sbjct: 104 IRTNGGNWENYKEEIKKRILKRKLYQIISQ------------------------------ 133

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
              ++       L  +++ +K+ +  P+   ++                           
Sbjct: 134 --ESLKMVDENQLRSYYDTHKEEFSIPQSIDVT--------------------------- 164

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKE 318
             K+FS E                        G     L +  GK +           + 
Sbjct: 165 --KFFSKE------------------------GAALETLIKSGGKDIPKGIGQENEVLQT 198

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
              +  +  + F+  K G FTP+      +V   +          F+ V+  +  ++   
Sbjct: 199 TALNPQIVSA-FTQGKIGSFTPIYPIGEDFVTFLIKAKNNPTLAPFENVRDIVLQKIMSQ 257

Query: 379 KASEKVKEDYKRL 391
           K    + E +++L
Sbjct: 258 KEDYLIYEYFEKL 270


>gi|171685376|ref|XP_001907629.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942649|emb|CAP68301.1| unnamed protein product [Podospora anserina S mat+]
          Length = 180

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEA----DEAFQSLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  +++EA        Q +K G+    +LA    +   +     LG F +  +      D
Sbjct: 95  ITRSKEEAMSIIKAHEQRIKSGEITLGELALSESDCSSARKRGDLGYFGRGDM-QKEFED 153

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L +KG+ + V+  + G  +  
Sbjct: 154 AAFAL-QKGEISGVVDTASGLHLIE 177


>gi|50546849|ref|XP_500894.1| YALI0B14663p [Yarrowia lipolytica]
 gi|49646760|emb|CAG83145.1| YALI0B14663p [Yarrowia lipolytica]
          Length = 185

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 27/110 (24%)

Query: 268 EIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK----KFIQLAEE 302
           +   V  L+                    ++EA          +K G+           +
Sbjct: 75  QKIRVSHLLIKHRDSRRPSSWKDANIERTKEEARAILEGHQAKIKAGETTIGDLAVSESD 134

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
              +     LG F K  +       + F+L + G  + ++  + G  +  
Sbjct: 135 CSSARKRGDLGFFGKGEM-QAEFEQASFAL-ENGQVSDIVETASGLHLIE 182


>gi|268680813|ref|YP_003305244.1| hypothetical protein Sdel_2197 [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618844|gb|ACZ13209.1| conserved hypothetical protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 283

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 20/176 (11%)

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           +YK+       +   Y     ++     +IS+ EL+A Y++N  ++       V      
Sbjct: 115 EYKEELTNKLKRDKLYRKIISNKL---QQISDGELKAYYDENLHEFSQANGFDVTIYTSA 171

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL--GSFSKEYIPDVSLADSIFSLAKKG 336
           NQ             +  I L +    +  D+ L  GSF    + D +LA ++ +     
Sbjct: 172 NQ-------------ESLISLKKNPMSTFKDVELKEGSFQAGKM-DANLA-TLLNKTATS 216

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
            F+ ++     YV+  V N   + TV+F + K  I  ++   K  + ++E +++L+
Sbjct: 217 SFSSIVKSDQNYVMFFVKNKHNAQTVAFDDAKNYIHAKLSEGKEQKAIEEYFEKLK 272


>gi|302697383|ref|XP_003038370.1| hypothetical protein SCHCODRAFT_63954 [Schizophyllum commune H4-8]
 gi|300112067|gb|EFJ03468.1| hypothetical protein SCHCODRAFT_63954 [Schizophyllum commune H4-8]
          Length = 165

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 27/112 (24%)

Query: 265 FSPEIRTVEQLVFP-----------------NQKEADEAFQSLKK-----GKKFIQLAEE 302
             P       L+                   +++EA E  +  +        KF +LA+ 
Sbjct: 52  GEPSRVRASHLLVKHRDSRRPSSWKEPTITRSKEEAIEILRGYQAQIGGNPDKFAELAQA 111

Query: 303 QGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
                S      LG FS+  +      D+ + L + G  + VI    G  + 
Sbjct: 112 HSDCSSHAHGGDLGWFSRGQMQKP-FEDTTYGL-EVGQMSDVISTDSGVHLI 161


>gi|156373135|ref|XP_001629389.1| predicted protein [Nematostella vectensis]
 gi|156216388|gb|EDO37326.1| predicted protein [Nematostella vectensis]
          Length = 150

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 35/138 (25%)

Query: 247 EISNDELQAEYEKNKEKYFSPE--------IRTVEQLVFP-----------------NQK 281
           ++SN   +  Y     K    E              L+                   ++ 
Sbjct: 11  KVSNSTGKTYYLNQHTKASQWERPTEPAGDQVRASHLLVKHSESRRPSSWKTDKITRSKD 70

Query: 282 EADEAF----QSLKKGK-KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
           EA        + +K G+     LA+   +   + +   LG F +  +       + FSL 
Sbjct: 71  EALAILKGYQEQIKSGEATLEDLAKTESDCSSAKNGGDLGFFGRGQMQKP-FETATFSL- 128

Query: 334 KKGDFTPVIHGSFGYVIA 351
           + G+ +  +    G  + 
Sbjct: 129 RVGEMSEPVFTDSGIHLI 146


>gi|94989370|ref|YP_597471.1| foldase protein PrsA [Streptococcus pyogenes MGAS9429]
 gi|94993261|ref|YP_601360.1| foldase protein PrsA [Streptococcus pyogenes MGAS2096]
 gi|94542878|gb|ABF32927.1| peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes
           MGAS9429]
 gi|94546769|gb|ABF36816.1| Peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes
           MGAS2096]
          Length = 317

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 68/215 (31%), Gaps = 30/215 (13%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T +V M    +  S+   +       +   +  ++            S+  + + +++ 
Sbjct: 37  NTKLVSMKGDTITVSDFYNETKNTELAQKAMLSLVISRVFETQYANKVSDKEVEKAYKQT 96

Query: 221 KDNY------------RAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
            D Y              PE  +        + + V E+ K   IS  + +  Y+     
Sbjct: 97  ADQYGTSFKTVLAQSGLTPETYKKQIRLTKLVEYAVKEQAKNETISKKDYRQAYDAYTPT 156

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
             +      E + F  +++A  A +++K  G  F  +A+E+  +       +F       
Sbjct: 157 MTT------EIMQFEKEEDAKAALEAVKAEGADFAAIAKEKTIAADKKITYTFDSGETTL 210

Query: 323 VSLADSIFSLAKKGDFT------PVIHGSFGYVIA 351
            +      S  K+G+ +              Y I 
Sbjct: 211 PAEVVRAASGLKEGNRSEIITALDPATSKRTYHII 245


>gi|226329059|ref|ZP_03804577.1| hypothetical protein PROPEN_02962 [Proteus penneri ATCC 35198]
 gi|225202245|gb|EEG84599.1| hypothetical protein PROPEN_02962 [Proteus penneri ATCC 35198]
          Length = 63

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 26/54 (48%)

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
               V L + S   V+++   P+  + L++V   V    K  K ++ ++++A +
Sbjct: 2   NSDMVTLGNDSAFIVRVEGYKPSASQPLDKVRDQVVMLVKQQKASQAMNAEAQK 55


>gi|195482278|ref|XP_002101983.1| GE17920 [Drosophila yakuba]
 gi|194189507|gb|EDX03091.1| GE17920 [Drosophila yakuba]
          Length = 169

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQ-----SLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA    +      +++   F +LA        +     LG F +  +   +  D
Sbjct: 84  ITRTKEEAQLLLEVYRNKIVQQEATFDELARAYSDCSSAKRGGDLGRFGRGQM-QAAFED 142

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F L   G  + ++ G  G  I 
Sbjct: 143 AAFKL-NVGQLSGIVDGDSGLHII 165


>gi|324993323|gb|EGC25243.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis SK405]
          Length = 335

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 84/240 (35%), Gaps = 24/240 (10%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +V M    +  +            +   +   + +        D  +  + + FEK K  
Sbjct: 29  IVTMKGNTITVNEFYDQVKTNGAAQQVLLQMTIKDIFEEKYGKDVKDKDVKEAFEKSKTA 88

Query: 224 YRAPEYKRISYILFDVHEKEKKI-----------EISNDELQAEYEKNKEKYFSPEIRTV 272
           Y     + ++         +++I           + +  EL  E  K   + ++PE+ T 
Sbjct: 89  YGTAFAQVLAQNGLTEDAYKEQIRTNMLVEYAVKKAAEKELTDENYKAAFENYTPEV-TA 147

Query: 273 EQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLA 326
           + +   ++ +  E  +  K  G  F Q+A+E     +    G   K       +PD ++ 
Sbjct: 148 QIIKVASEDKGKEVLEKAKAEGADFSQIAKENSTDAATKEKGGEIKFDSGSTDVPD-AVK 206

Query: 327 DSIFSLAKKG--DFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            + F+L + G  D   V    +   Y I  +   K   + ++++ K  +   +   K  +
Sbjct: 207 KAAFALEENGVSDLVTVPDSQYSASYYIVKLVK-KSEKSSNWKDYKDKLKKIIIAQKEKD 265


>gi|328675822|gb|AEB28497.1| Peptidyl-prolyl cis-trans isomerase ppiC [Francisella cf. novicida
           3523]
          Length = 92

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLAD 327
              L+  ++ E  +  + + +GK  F + A +     S      LG+FS+  +       
Sbjct: 5   ARHLLVQSESECQQIKKDITEGKITFEEAARKHSLCPSGARGGDLGTFSQGQMV-PEFDR 63

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +F+  +       +   FGY +  +++ 
Sbjct: 64  VVFN-DELHTVHGPVQTQFGYHLLEITSR 91


>gi|123476934|ref|XP_001321637.1| PPIC-type PPIASE domain containing protein [Trichomonas vaginalis
           G3]
 gi|121904467|gb|EAY09414.1| PPIC-type PPIASE domain containing protein [Trichomonas vaginalis
           G3]
          Length = 154

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 17/107 (15%)

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-----LKKGKKFIQLAEEQG--- 304
           L    + N+ ++ +P ++         ++EA           L   KKF  +A+++    
Sbjct: 53  LHILIKHNQSEHPNPALKR-------TREEAQNIINEIHQILLTDNKKFESIAKDRSDCE 105

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            +  +  LG  +++ +P        + L   G  +       G+ I 
Sbjct: 106 SAKFNGVLGWIARKKMP-PEFEKVAWGLG-IGQISKPFETVEGFHIV 150


>gi|313205229|ref|YP_004043886.1| hypothetical protein Palpr_2772 [Paludibacter propionicigenes WB4]
 gi|312444545|gb|ADQ80901.1| hypothetical protein Palpr_2772 [Paludibacter propionicigenes WB4]
          Length = 571

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 74/222 (33%), Gaps = 20/222 (9%)

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK----------K 245
            L +  +          +  +  + K +  A    R+ Y +      +            
Sbjct: 68  KLTDADLKKKI-IDEGYINAYALENKYDTIASLKTRLDYAIRFYAAVQDGYMWNKKYKQA 126

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE---AFQSLKKGKKFIQLAEE 302
           + +S  +L+  YEK K +Y       +E ++FP++   D+   +  +      F  +   
Sbjct: 127 LVVSETQLREAYEKQKLEYN------IEFILFPDKGLLDKYCSSHSAGLSSSDFNSIKSR 180

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
            G      S  ++ +       L        KKGD    +    GY I  +   + +F V
Sbjct: 181 IGSKSGVYSSSTYQRYPFNLPGLDYDKLIQCKKGDVWGPVQTPEGYFIYRMVESRNTFKV 240

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
            +  +K ++   +    A +   E  K + +      S + I
Sbjct: 241 PYNTLKPNLQKILEHKLAQKYDNERKKEVLQKAKPVMSDETI 282



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 68/183 (37%), Gaps = 23/183 (12%)

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           ++     +I    +       K+ ++  E +  Y +N +K+ +     V    F + + A
Sbjct: 373 FKRNRQFKIYTQHYKETNVIPKVVVTEAESRKFYNQNIDKFKTFGSCEVLIYKFKDSQTA 432

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE-YIPDVS-----LADSIFSLAKKG- 336
                    G     +A    +      +   +K   IP+ +     ++D   S   K  
Sbjct: 433 ---------GNSMPPIAVRYTQKPVPQEIQDRAKSIKIPEPTPATLKISDKTLSANIKSA 483

Query: 337 -------DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
                    +  I  + GY + ++ +      + ++EVK +IA ++    +++ +++   
Sbjct: 484 IIRLMPTQVSMPIQMNNGYWVIYLKSKSDLIIIPYEEVKSEIAAKLPEILSNQILEQQIS 543

Query: 390 RLE 392
           +L+
Sbjct: 544 KLK 546


>gi|254779354|ref|YP_003057459.1| hypothetical protein HELPY_0712 [Helicobacter pylori B38]
 gi|254001265|emb|CAX29242.1| Conserved hypothetical protein [Helicobacter pylori B38]
          Length = 420

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 61/181 (33%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 181 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 236

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 237 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 271

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y      + E+ +   N E
Sbjct: 272 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTSQEDLERAMADPNLE 323

Query: 253 L 253
           +
Sbjct: 324 I 324


>gi|150389947|ref|YP_001319996.1| hypothetical protein Amet_2178 [Alkaliphilus metalliredigens QYMF]
 gi|149949809|gb|ABR48337.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
          Length = 218

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 9/146 (6%)

Query: 47  GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLVSGATLDQFIE 104
             Q++    F +  +       Q+ G    SE  + +   +++  L+NL+    L Q   
Sbjct: 35  NSQEIRRVDFESVVENTKLYYQQQFGIDFQSEDDKGLIALIEEDALNNLIEQELLLQSTL 94

Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
           +   +     +  EI +         +F S + F   L    +      +     +    
Sbjct: 95  ERDYQVSKDELNYEIEQIKS------QFESEEEFSMALEVNQLTLALLEEDIANEIMLRQ 148

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFEN 189
            +   VG    S   +      Y E 
Sbjct: 149 YIQDEVGDPTVSEEEMMAMYDEYSET 174


>gi|281355162|ref|ZP_06241656.1| hypothetical protein Vvad_PD3268 [Victivallis vadensis ATCC
           BAA-548]
 gi|281318042|gb|EFB02062.1| hypothetical protein Vvad_PD3268 [Victivallis vadensis ATCC
           BAA-548]
          Length = 314

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGKKF 296
               +++ + E++  Y  +++++  PE   +  +         ++  ++A   L++G+ F
Sbjct: 145 YPDWVKVDDREVENAYRLDQQRFLLPEKLELGVIEVERSRDNARETIEDARARLRQGENF 204

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            ++A E          G  S           S   +  +G  + V+     +++  V   
Sbjct: 205 DRVAAEVSPD------GVKSSAETVMELFRISGAKIPVRG-VSEVLESGDRFLLLMVRER 257

Query: 357 KPSFTVSFQEVKKDIANQMRITKA 380
            P+  V  ++    +  Q+   K 
Sbjct: 258 IPARFVPLKDAAPYLREQLAAAKV 281


>gi|15644452|ref|NP_229504.1| hypothetical protein TM1704 [Thermotoga maritima MSB8]
 gi|4982281|gb|AAD36771.1|AE001810_10 hypothetical protein TM_1704 [Thermotoga maritima MSB8]
          Length = 581

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 100/289 (34%), Gaps = 43/289 (14%)

Query: 134 HDVFVSRLAREGINEKE--YIDHYTKMLSRTDVVGMFV-------GGMRPSNLLLDQAKR 184
           +D + + L+   I   +  + +   K L     +   V         ++PS   ++Q   
Sbjct: 71  NDYYSNLLSSYQITSLDPLFEEPRLKALIADVFLQQKVVLYYAEKNNIKPSKKEIEQEVN 130

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF---EKYKDNYRAPEYKRISYILFDVHE 241
              +    D   LN              + + +     Y+ NY  P+ +    +   + +
Sbjct: 131 NVIQTIKNDQNQLNR-------------IERMYGSLSNYEKNYLEPQIR----VQLTIKK 173

Query: 242 KEKKI-EISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            ++K+  ++ DE++  +E+NKE      +   +E + F +   A E          F + 
Sbjct: 174 VQEKVGVVTEDEIKKYFEENKEDLQKQYDRVDIEAVSFDSSSTAQEFIAK-ASEMGFDEA 232

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           A     ++   S  + ++   PD  +  ++FS A  G      +    + +  V     S
Sbjct: 233 ASSMNVTVQPFS--NATRGIFPD-EIDTALFS-ATPGSIVGPFYFLDQWYVFRVK--TSS 286

Query: 360 FTVSF-----QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
               F      +   D+  ++   K  + ++E  K      A    + E
Sbjct: 287 VLTDFNAFSNSDAYSDVKTKLEQEKFQKWLEEFMKEENLSYAFNDQVLE 335


>gi|308182851|ref|YP_003926978.1| hypothetical protein HPPC_03490 [Helicobacter pylori PeCan4]
 gi|308065036|gb|ADO06928.1| hypothetical protein HPPC_03490 [Helicobacter pylori PeCan4]
          Length = 405

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 166 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 221

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 222 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 256

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+KD +  P E + + Y   +  + E+ +   N E
Sbjct: 257 --------LTNVDTSSETKMREYYNKHKDQFSIPTEVETVRYTSTNQEDLERAMSNPNLE 308

Query: 253 L 253
           +
Sbjct: 309 V 309



 Score = 37.3 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 15/176 (8%)

Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEIS-NDELQAEYEKNKEKYFSPEIRTVEQLV 276
           E +   YR    + +       +     ++ S   +++  Y K+K+++  P      +  
Sbjct: 232 EGHYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKDQFSIPTEVETVRYT 291

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             NQ++ + A                    +  +S  +   E          +F   ++G
Sbjct: 292 STNQEDLERAM-------------SNPNLEVPGVSKANEKIEMKTLNPQIAQVFISHEQG 338

Query: 337 DFTPVIHGSFG-YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            FTPV++G  G ++  ++   K    VSF + K+ IA ++      + ++E +++L
Sbjct: 339 SFTPVMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKL 394


>gi|217032492|ref|ZP_03437984.1| hypothetical protein HPB128_156g22 [Helicobacter pylori B128]
 gi|298736357|ref|YP_003728883.1| hypothetical protein HPB8_862 [Helicobacter pylori B8]
 gi|216945838|gb|EEC24459.1| hypothetical protein HPB128_156g22 [Helicobacter pylori B128]
 gi|298355547|emb|CBI66419.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 408

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 169 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 224

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 225 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 259

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 260 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLE 311

Query: 253 L 253
           +
Sbjct: 312 I 312


>gi|323697783|ref|ZP_08109695.1| hypothetical protein DND132_0363 [Desulfovibrio sp. ND132]
 gi|323457715|gb|EGB13580.1| hypothetical protein DND132_0363 [Desulfovibrio desulfuricans
           ND132]
          Length = 370

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/298 (12%), Positives = 90/298 (30%), Gaps = 14/298 (4%)

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS------NAVLTQWFEKYKDNY 224
           G   S+L++ +        R +       R               + VL + +   K  +
Sbjct: 68  GEILSDLIVQELVVQELARRDLSVTDEELRKAEDAVRADYPEGAFDQVLVEEYIDLKS-W 126

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
           R      ++   F       +I+I   E +  Y  +   ++ PE   +  +  P+++   
Sbjct: 127 RTQLRYYLAQKKFFQQVLRPQIKIDYKEAEKYYRDHISDFYLPESMRILVVRGPSRELVV 186

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           +A     K    + LA   G+     +     +E         ++  L K G  + V+  
Sbjct: 187 KAVDKYLKDHDQMSLATAFGEVE---TREVVVREGRLSAPWRTALTGL-KPGQASDVLTD 242

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL---EEFLALGTSM 401
            FG+    +     +  +   +    +   +   K     +E         +       +
Sbjct: 243 RFGFEALVLLERSEAKVLPPAQAYPLVEEALLEKKMESAFEEWLSATLAKADIQVSEHLL 302

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           +  S+  +  S     V    ++   + +  +P  +     +   D         A+P
Sbjct: 303 ESASKPGEGDSGGSDAVTEEPEEPADQTMDQVPPPDVSRDDMRQDDGEGQDPADEAIP 360


>gi|296812781|ref|XP_002846728.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Arthroderma otae CBS
           113480]
 gi|238841984|gb|EEQ31646.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Arthroderma otae CBS
           113480]
          Length = 218

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAF----QSLKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  ++ EA E      + ++ G+           +   +     LG F +  +       
Sbjct: 85  ITRSKSEAIEILRGHQKRIEAGEASLGDIATSESDCSSARKRGDLGFFGRGEM-QAEFEQ 143

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L K G  + ++  + G  +  
Sbjct: 144 AAFAL-KVGQVSDIVETASGVHLIE 167


>gi|208434581|ref|YP_002266247.1| hypothetical protein HPG27_621 [Helicobacter pylori G27]
 gi|208432510|gb|ACI27381.1| hypothetical protein HPG27_621 [Helicobacter pylori G27]
          Length = 415

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 61/181 (33%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 176 QIQEEQKKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 231

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 232 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 266

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y      + E+ +   N E
Sbjct: 267 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTSQEDLERAMADPNLE 318

Query: 253 L 253
           +
Sbjct: 319 I 319


>gi|326493260|dbj|BAJ85091.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 124

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEAD-EAFQSLKKG-KKFIQLAEEQGKSLS---DISLG 313
           + K  +  PE R +      +      E    +  G   F  LA +     S      LG
Sbjct: 25  RRKASWKDPEGRVISATTRADAAARLGELRSQILAGRASFADLAAQHSDCSSARRGGDLG 84

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           +F +  +      D+ ++L K G+ + +I    G  I 
Sbjct: 85  TFGRRQMQKP-FEDATYAL-KVGEISDIIDTESGVHII 120


>gi|86149973|ref|ZP_01068201.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|148926278|ref|ZP_01809963.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205356305|ref|ZP_03223071.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|85839419|gb|EAQ56680.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|145845449|gb|EDK22542.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205345910|gb|EDZ32547.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 271

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 74/234 (31%), Gaps = 59/234 (25%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
           + + F  +  +    + + ++  V V ++ +       +                     
Sbjct: 4   ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTM-------------------- 41

Query: 81  RSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           +++ +D+ K L  L++       ++ +G+  +   +   I +        NK + + F +
Sbjct: 42  KALKIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKM----LAQNKTTLNAFKA 97

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L  +  + +++  ++ K L +  +                                   
Sbjct: 98  NLKSKNQSYEQFRANFKKDLEKRKLYEKIAS----------------------------- 128

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               A  D S+    ++FE+ KD +        +  L +  +  + I+ +   +
Sbjct: 129 ---MAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKKTI 179



 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 72/179 (40%), Gaps = 19/179 (10%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +E+++ N++    KR  Y          K + S+D  +  +E+NK+K+           +
Sbjct: 106 YEQFRANFKKDLEKRKLYEKI---ASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYL 162

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             N +  +    + K       + + Q  SL+  +        +  + +          G
Sbjct: 163 SNNPQTLENIKNTKK------TILKPQNASLNTSNADPRLLGLLSQIPV----------G 206

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
            F+PV++G  GY +  V +   + T  +++VK ++ N     +    +++ + +L   +
Sbjct: 207 GFSPVLNGKNGYELYEVKSRDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKI 265


>gi|109947398|ref|YP_664626.1| hypothetical protein Hac_0844 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714619|emb|CAJ99627.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 404

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 70/210 (33%), Gaps = 38/210 (18%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +      +  D L++    +Q IE + +  D  R+  E+A      G      
Sbjct: 165 QIQEEQEKFKVSKNQARDRLIADRIKNQEIERLKIHIDDDRLDQEMAMMAQQQG----MD 220

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   +  EG   K Y D   + L   +++   +                        
Sbjct: 221 LDHFKQMIMAEGHY-KTYRDQLKEHLEMQELLRNIL------------------------ 255

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y      + E+ +   N E
Sbjct: 256 --------LTNVDTSSETKMREYYNKHKEQFSIPMEVETVRYSSTSQEDLERAMSDPNLE 307

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
           +    + N+          + Q+   ++K+
Sbjct: 308 VPGVNKANETIEMKTLNPQIAQVFISHEKD 337


>gi|168011406|ref|XP_001758394.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690429|gb|EDQ76796.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 119

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 13/101 (12%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQLAEEQG---KSLSDI 310
           +    +  PE R + +     + +A       K            LA +      +    
Sbjct: 20  RRPASWKDPEGRIIRK---TTRDDAVAKLMQFKSDIESGRATLADLATQNSDCSSAKRGG 76

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            LG F +  + +     + F+L   G+ + +I    G  I 
Sbjct: 77  DLGWFGRGQMQEP-FERATFNL-NVGELSDIIDTDSGSHII 115


>gi|308804293|ref|XP_003079459.1| peptidyl-prolyl cis-trans isomerase C (ISS) [Ostreococcus tauri]
 gi|116057914|emb|CAL54117.1| peptidyl-prolyl cis-trans isomerase C (ISS) [Ostreococcus tauri]
          Length = 181

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 14/119 (11%)

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG--------KKFIQLAEEQG 304
               Y      +  P   +   ++  ++  AD   + +++           F ++AE++ 
Sbjct: 65  AFFAYRAFGSAFIGP-QASASHVLVKSRARADALKREIEEAVAGGAPLRATFARVAEKES 123

Query: 305 ---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
               S     LGSF +  +      D +F+          +   FG  +  +++     
Sbjct: 124 TCPSSKKGGELGSFRRGQMV-REFDDVVFT-GDLNTVLGPVDTQFGSHLILITDRDADA 180


>gi|213586381|ref|ZP_03368207.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 102

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGD 337
            Q++A+   +  + G  F +LA         +  G      I +   +     S AKKGD
Sbjct: 1   AQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGD 60

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFT 361
               I    G+ I  V++++    
Sbjct: 61  IVGPIRSGVGFHILKVNDLRGQSQ 84


>gi|125605671|gb|EAZ44707.1| hypothetical protein OsJ_29333 [Oryza sativa Japonica Group]
          Length = 162

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 29/114 (25%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQL--------------AEEQGKS 306
               ++   Q + +EA++ L+ G           +F +L              A+E  + 
Sbjct: 50  KARHVLCEKQGKINEAYKKLQDGWLDNGDKVPPAEFAKLNAAVPVISYESQMIAQEYSEC 109

Query: 307 LSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            S      LG F +  +      D  FS    G  +     + GY        K
Sbjct: 110 PSGKKGGDLGWFPRGKMAGP-FQDVAFS-TPVGATSAPFKSTHGYHFILCEGRK 161


>gi|42527165|ref|NP_972263.1| basic membrane protein, putative [Treponema denticola ATCC 35405]
 gi|41817589|gb|AAS12174.1| basic membrane protein, putative [Treponema denticola ATCC 35405]
 gi|325474208|gb|EGC77396.1| basic membrane protein [Treponema denticola F0402]
          Length = 358

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 87/250 (34%), Gaps = 46/250 (18%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           +F+  ++ G    L + +    +  V    ++ +         K+ +     + G +  +
Sbjct: 5   IFIAVMLVGFLGLLSAQNDLQVIAQVNLSKKEPITLGQL----KKLVKFAESQGGNIATN 60

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
           +        K +L++L+    L Q  E   ++  + +V                   + F
Sbjct: 61  DD------KKLVLESLMRTKLLVQAAEKENIKISNSQV------------------DNAF 96

Query: 138 VSRLARE---GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD- 193
              L++     I E E+     +       +  F+   + +   +++ K+   +N  +  
Sbjct: 97  NDVLSQYVKYPITESEFAKLIKQ--KENISLDEFMK--KQTGCTVEELKKIIKDNLIIQN 152

Query: 194 -YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
                +   +  +A P++A +  ++E  K     P+  ++ ++      K        +E
Sbjct: 153 YIASKHQAEIVKMATPTDAQIRSYYEMKKGELVRPDMVKMLFVAVKKEGK------DKEE 206

Query: 253 LQAEYEKNKE 262
           +    E +K+
Sbjct: 207 IDKINELHKK 216


>gi|307637349|gb|ADN79799.1| hypothetical protein hp908_0672 [Helicobacter pylori 908]
 gi|325995941|gb|ADZ51346.1| hypothetical protein hp2018_0650 [Helicobacter pylori 2018]
 gi|325997535|gb|ADZ49743.1| hypothetical protein hp2017_0649 [Helicobacter pylori 2017]
          Length = 414

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 175 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 230

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 231 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 265

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 266 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLE 317

Query: 253 L 253
           +
Sbjct: 318 V 318


>gi|221116075|ref|XP_002158589.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 149

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 43/130 (33%), Gaps = 34/130 (26%)

Query: 254 QAEY---EKNKEKYFSPE----IRTVEQLVFP-----------------NQKEADEAFQ- 288
           +  Y   E N+ ++  P+          L+                    ++EA +  + 
Sbjct: 18  KKYYFNTETNESQWEKPDNEEFQVRASHLLVKHKGSRRPSSWKQNVITRTEEEALDIIKN 77

Query: 289 ---SLKKGKK-FIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
               +  GK     LA+   +   + +   LG F    +   S  ++ F+L K  + +  
Sbjct: 78  YHKQITSGKTTLAALAQSESDCSSAKNGGDLGFFGPGQM-QKSFEEAAFAL-KINEMSGP 135

Query: 342 IHGSFGYVIA 351
           ++   G  + 
Sbjct: 136 VYSDSGIHLI 145


>gi|219684780|ref|ZP_03539722.1| conserved hypothetical protein [Borrelia garinii PBr]
 gi|219671725|gb|EED28780.1| conserved hypothetical protein [Borrelia garinii PBr]
          Length = 500

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 80/278 (28%), Gaps = 45/278 (16%)

Query: 10  RTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVG---RQKV------PFS 54
           +         ++ + F         G+ D   S       +  G    Q +       F+
Sbjct: 20  KKVGIWGIFALILIVFGFIIAPLLPGIFDNAHSSG-----LKFGSYKGQPIYYKKDSKFA 74

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKI--LDNL--VSGATLDQFIEDIGLEA 110
            ++N +      +            A+++ +D     L  +  V        I+      
Sbjct: 75  KYVNYYSNLYSRLQGN---------AKNINIDYNAWYLAFMKYVEDIAFFDLIKKYNFYI 125

Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
               +   + RSP +   +  FS   +          + +  D   + +  ++V      
Sbjct: 126 SKEMLNKNLLRSPEYLDSNGNFSSKRYN---KASDYQKVKIYDDMVENILFSNVKIFLNS 182

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
            +   + L +  K      R + Y+ L+ +        S      + EK  + ++     
Sbjct: 183 NLIFPDSLFNLIKDMSTVERHISYLSLSYQDFSNKEAIS------YAEKNLNLFKRLSLA 236

Query: 231 RISYILFDVHEKEKKIEISN---DELQAEYEKNKEKYF 265
            I +   +  +      ++    +EL   Y  +   + 
Sbjct: 237 SIRFKNMNDAKNAYDKLLNKTPFEELAKLYSDDIANFK 274


>gi|86150833|ref|ZP_01069049.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124743|ref|YP_004066747.1| hypothetical protein ICDCCJ07001_1237 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85842003|gb|EAQ59249.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018465|gb|ADT66558.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 271

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 74/234 (31%), Gaps = 59/234 (25%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
           + + F  +  +    + + ++  V V ++ +       +                     
Sbjct: 4   ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTM-------------------- 41

Query: 81  RSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           +++ +D+ K L  L++       ++ +G+  +   +   I +        NK + + F +
Sbjct: 42  KALKIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKM----LAQNKTTLNAFKA 97

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L  +  + +++  ++ K L +  +                                   
Sbjct: 98  NLKSKNQSYEQFRANFKKDLEKRKLYEKIAS----------------------------- 128

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               A  D S+    ++FE+ KD +        +  L +  +  + I+ +   +
Sbjct: 129 ---MAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKKTI 179



 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 72/179 (40%), Gaps = 19/179 (10%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +E+++ N++    KR  Y          K + S+D  +  +E+NK+K+           +
Sbjct: 106 YEQFRANFKKDLEKRKLYEKI---ASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYL 162

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             N +  +    + K       + + Q  SL+  +        +  + +          G
Sbjct: 163 SNNPQTLENIKNTKK------TILKPQNASLNTSNADPRLLGLLSQIPV----------G 206

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
            F+PV++G  GY +  V +   + T  +++VK ++ N     +    +++ + +L   +
Sbjct: 207 GFSPVLNGKNGYELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKI 265


>gi|255730987|ref|XP_002550418.1| peptidyl-prolyl cis-trans isomerase 1 [Candida tropicalis MYA-3404]
 gi|240132375|gb|EER31933.1| peptidyl-prolyl cis-trans isomerase 1 [Candida tropicalis MYA-3404]
          Length = 177

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 23/150 (15%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
              VL  +  K+K+N   P           V  K+ ++ +S+  L+    +  + + SPE
Sbjct: 42  DTEVLNAYIAKFKNNGYKP-----------VVNKDGQVRVSHLLLKHNQSRKPKSWKSPE 90

Query: 269 --IRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPD 322
              RT ++ +   +K        +K G+ K   LA  +    S      LG FSK  +  
Sbjct: 91  GITRTRDEAIQQTKKH----LAKIKNGEVKLGDLAVTESDCSSHERGGDLGFFSKGQM-Q 145

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
               ++ F+L   G+ + ++  + G  I  
Sbjct: 146 PPFEEAAFNLH-VGEVSNIVETNSGIHILQ 174


>gi|192360509|ref|YP_001982979.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio
           japonicus Ueda107]
 gi|190686674|gb|ACE84352.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio
           japonicus Ueda107]
          Length = 284

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 83/259 (32%), Gaps = 42/259 (16%)

Query: 146 INEKEYIDHYTKMLSRT-------DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
           I  ++      +ML          ++ G  +  +  S  +  Q K    E  S       
Sbjct: 44  ITREQVDYMLERMLGAQPLVPITRELRGKVLDSLIASKAMTLQVKSSMSEEDSQR----- 98

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
              V          L  + ++Y   Y  PE                   ++ + + A Y+
Sbjct: 99  ---VQRAVQAYEEEL--YVKEYLARYATPE------------------PVTVEMVSAYYD 135

Query: 259 KNKEKYFSPEIRTVEQLVFPN---QKEADE---AFQSLKKGKKFIQLAEEQGKSLSDISL 312
            +  ++    ++  + L+  +    K+ D    A +SLK    +   A E  + L     
Sbjct: 136 AHPNEFGGGVLKHFQLLLLRDSGDDKKRDAFLSAVESLKASTDWKARAGEWSRQLPIEYQ 195

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                  + D  L   I  L K+   + +I+      +  VS++  +      EV  DI 
Sbjct: 196 EGKYAPGLLDERLGKVIDQLGKQ-ATSDLIYVDKAIYLVRVSDVVQTAPKPIAEVSADIR 254

Query: 373 NQMRITKASEKVKEDYKRL 391
            ++   +    VK+    +
Sbjct: 255 KKLAAQQLRAAVKKATDDV 273



 Score = 36.9 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 21/59 (35%)

Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
                  +   D +   V++ + +    + + EV  D++K     +    V    + +V
Sbjct: 216 GKQATSDLIYVDKAIYLVRVSDVVQTAPKPIAEVSADIRKKLAAQQLRAAVKKATDDVV 274


>gi|90416803|ref|ZP_01224733.1| hypothetical protein GB2207_04109 [marine gamma proteobacterium
           HTCC2207]
 gi|90331556|gb|EAS46792.1| hypothetical protein GB2207_04109 [marine gamma proteobacterium
           HTCC2207]
          Length = 248

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 9/143 (6%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----DEAFQSLKKGKKFIQLAEEQG 304
           + DEL+  Y  N+++Y +P    +E + F   K      + A Q LK G+  +    +Q 
Sbjct: 103 TADELKTFYTLNQQRYRNPSTFWLEVISFATAKHGGQVFERAEQELKTGQPPVGDLRDQY 162

Query: 305 KSLSDISLGSFSKEYIPDV--SLADSIFSLAKKGDFT---PVIHGSFGYVIAHVSNIKPS 359
            ++S I L +   +   D    +   I +L+K          I  S G  +  V  +   
Sbjct: 163 TAISTIELETLYGQSFVDSLMEIEQPISALSKTPPLACWHGPISSSLGAHLVCVDKMIWG 222

Query: 360 FTVSFQEVKKDIANQMRITKASE 382
                +EV+  + N  R + + E
Sbjct: 223 DYPPLEEVENQLINDWRFSVSRE 245


>gi|149244896|ref|XP_001526991.1| peptidyl-prolyl cis-trans isomerase 1 [Lodderomyces elongisporus
           NRRL YB-4239]
 gi|146449385|gb|EDK43641.1| peptidyl-prolyl cis-trans isomerase 1 [Lodderomyces elongisporus
           NRRL YB-4239]
          Length = 176

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 25/151 (16%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
              VLT + +K+K+N   P          D   +   I + N   +       + + SPE
Sbjct: 41  DTEVLTSYIQKFKNNGFKP------VTNDDGKVRASHILVKNATSRK-----PKSWKSPE 89

Query: 269 IRTVEQLVFPNQKE---ADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIP 321
                 ++    +    A +    +  G+ KF  +A+ +    S      LG F K  + 
Sbjct: 90  G-----ILISRDEAISIAKKHLAQILSGEAKFADVAQAESDCSSHARGGDLGFFGKREM- 143

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +   +++S+   G+ + VI    G  +  
Sbjct: 144 QPAFESTVYSMH-VGEISDVIETDSGIHLVQ 173


>gi|145347174|ref|XP_001418050.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578278|gb|ABO96343.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 106

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG--------KKFIQLAEEQG---KSLSDISLGSFSKEY 319
           T   ++  ++  A+     ++           KF ++AE+      +     LG+F    
Sbjct: 7   TASHVLVKDRARAEALKAEIEADVAGGAPLRAKFARVAEQHSTCPSAKKGGELGAFKPGQ 66

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           +      D++    + G     +   FG  +  V++ + + 
Sbjct: 67  MVKE--FDAVVFSGEIGAVLGPVDTQFGSHLILVTDREEAK 105


>gi|119386937|ref|YP_917992.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
 gi|119377532|gb|ABL72296.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
          Length = 267

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 51/151 (33%), Gaps = 17/151 (11%)

Query: 262 EKYFSPEIRTVEQLVFPN-----------QKEADEAFQSLKK-GKKFIQLAEEQGKSLSD 309
           E++ +P +     ++F             +  A+     L+   ++F +LA       S 
Sbjct: 109 EQFRAPSLYEAAHILFAAAPEDTSARTEARARAEAVLAELRAEPRRFAELAARYSACSSK 168

Query: 310 ISLGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
            + G   +    D     D++ +  ++G    +    +G  +  +        + F+ V 
Sbjct: 169 TAGGMLGQLTSGDTVPEFDAVLATMEEGAL-ALAETRYGLHVIRLDARARGEVLPFESVL 227

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGT 399
             +       KA+  ++     L+  +A   
Sbjct: 228 PQLRQ--AHDKAA-WLRASRDYLDGLVAGAE 255


>gi|149180663|ref|ZP_01859167.1| hypothetical protein BSG1_16940 [Bacillus sp. SG-1]
 gi|148851816|gb|EDL65962.1| hypothetical protein BSG1_16940 [Bacillus sp. SG-1]
          Length = 255

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 11/150 (7%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
             TV  V  + +   ++     Q      Q      + E A    L +  +D+L+    L
Sbjct: 62  EKTVAVVNDEDIKGEAYNTLLTQTQLQYQQMGQDPTSEELATQ--LKESTIDSLIGQTLL 119

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  +  G EA    +  EI          N      F   L   G+     ID     +
Sbjct: 120 LQEADKKGYEATDEEIQKEIDTLKA-----NYEDEAQFEEILKTNGLT----IDQLKTEV 170

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           +       FV        + D+  + Y++ 
Sbjct: 171 ANNIKYTAFVEKELTIEEVKDEDVKAYYDQ 200


>gi|327303380|ref|XP_003236382.1| peptidyl-prolyl cis-trans isomerase [Trichophyton rubrum CBS
           118892]
 gi|326461724|gb|EGD87177.1| peptidyl-prolyl cis-trans isomerase [Trichophyton rubrum CBS
           118892]
          Length = 178

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 35/120 (29%), Gaps = 27/120 (22%)

Query: 258 EKNKEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-- 294
           +++              L+                   ++ EA E      Q ++ G+  
Sbjct: 58  DRHGASGQGEGKIRASHLLIKHRDSRRPSSWRESEITRSKDEAIEILRNHKQRIQSGEAS 117

Query: 295 --KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                    +   +     LG F +  +       + F+L K G+ + ++  + G  +  
Sbjct: 118 LGDIATSESDCSSARKRGDLGFFGRGEM-QAEFEQAAFAL-KVGEVSDIVETASGVHLIE 175


>gi|317012477|gb|ADU83085.1| hypothetical protein HPLT_03295 [Helicobacter pylori Lithuania75]
          Length = 419

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 180 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 235

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 236 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 270

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 271 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMTDPNLE 322

Query: 253 L 253
           +
Sbjct: 323 I 323


>gi|312282999|dbj|BAJ34365.1| unnamed protein product [Thellungiella halophila]
          Length = 119

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 48/117 (41%), Gaps = 13/117 (11%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQ 298
            +++ S+  ++ +  + K  +  PE +    ++   ++ A E  +S+++        F  
Sbjct: 5   DQVKASHILIKHQGSRRKASWKDPEGK---IIMTTTREAAVEQLKSIREDIVSGKANFED 61

Query: 299 LA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           +A    +   +     LG F +  +      ++ ++L K GD + ++    G  I  
Sbjct: 62  VATRVSDCSSAKRGGDLGPFGRGQMQKP-FEEATYAL-KVGDISDIVDTDSGVHIIK 116


>gi|309800306|ref|ZP_07694478.1| foldase protein PrsA [Streptococcus infantis SK1302]
 gi|308116053|gb|EFO53557.1| foldase protein PrsA [Streptococcus infantis SK1302]
          Length = 313

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 68/196 (34%), Gaps = 19/196 (9%)

Query: 203 PAIADPSNAVLTQWFEKYKDNY----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
             + D       ++ + Y+          E ++       + E   K    ++     Y+
Sbjct: 77  KEVEDAVAEEQKKYGDSYQTILARSGMTAESRKAQIRTSKLVEYAVKKAAESELTDENYK 136

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSK 317
           K  E+Y +PE+ T + +   ++ +A E     K+ G  F QLA++          G    
Sbjct: 137 KAFEEY-TPEV-TAQIIKLDSEDKAKEVLAKAKESGADFAQLAKDNSTDEKTKENGGEIT 194

Query: 318 EYIPDVSLAD----SIFSLAKKGDFTPVIHGSF------GYVIAHVSNIKPSFTVSFQEV 367
                  L D    + F+L   G  + VI           + I  ++  K   + +  + 
Sbjct: 195 FDSASTELPDVVKKAAFALDVNG-ISDVITAPGTQAYTSSFYIVKLTK-KSEKSSNLDDY 252

Query: 368 KKDIANQMRITKASEK 383
           K+ +   +   K ++ 
Sbjct: 253 KEKLKTIILTQKQNDA 268


>gi|307565745|ref|ZP_07628214.1| PPIC-type PPIASE domain protein [Prevotella amnii CRIS 21A-A]
 gi|307345571|gb|EFN90939.1| PPIC-type PPIASE domain protein [Prevotella amnii CRIS 21A-A]
          Length = 385

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
           AD  + +L+ G  F  LA++      +      +K  + +    + + S  K G+    I
Sbjct: 155 ADSIYIALQHGDNFETLAKKYSNRKEEGVFFIATKNNMLED--VEKVLSTMKVGEICRPI 212

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
              FG  I  +   +     +++ ++  +  Q+  +   +++ E  + 
Sbjct: 213 SSPFGLHILKLIGRE--KFPTYKVIRPQLILQIEKSNLRKQIIEQQQN 258


>gi|296876819|ref|ZP_06900867.1| peptidyl-prolyl cis-trans isomerase [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432321|gb|EFH18120.1| peptidyl-prolyl cis-trans isomerase [Streptococcus parasanguinis
           ATCC 15912]
          Length = 314

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 44/232 (18%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFV--------GGMRPSNLLLDQAKRFYFENRSVDYIVL 197
           I   ++ D          V+             G + S+  +D+      +     +   
Sbjct: 37  ITVSDFYDEIKSNQGAQQVLFQMTINKVFEKEYGSKISDKEVDKELAKQKKQLGNQF--- 93

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                 A    +     +               R + +L     +  K +I   + +  +
Sbjct: 94  --DAYLAQQGLTEETAKK-------------QIRSNMLLEYAVSQAAKKDIKESDYKTAF 138

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFS 316
           E       +PE+ T + +   ++ +A E  ++ K  G  F ++A++     +    G   
Sbjct: 139 ESY-----TPEV-TAQIIKLDSEDKAKEVLEAAKAEGADFAKIAKDNSTDTATKDKGGEV 192

Query: 317 KEYIPDVSLA----DSIFSLAKKGDFTPVIHGSFG------YVIAHVSNIKP 358
           K       +     ++ F L + G  + VI  S G      Y I  ++    
Sbjct: 193 KFDSGTADIPSQVKEAAFKLDENG-ISDVITVSAGQNYSASYYIVKLNKKTE 243


>gi|162450855|ref|YP_001613222.1| hypothetical protein sce2583 [Sorangium cellulosum 'So ce 56']
 gi|161161437|emb|CAN92742.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 327

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 79/250 (31%), Gaps = 21/250 (8%)

Query: 152 IDHYTKMLSRTDVV------GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN------N 199
           +D   ++ +   +             +  +       ++     R +  ++         
Sbjct: 48  VDSVARIAAAQQIPPAQARDAAVRDALWAAEARARGLEQEPDVRREISLVLARRMLHRLK 107

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV-----HEKEKKIEISNDELQ 254
                    ++  L    E++  +   PE  R  + +  +          + +   D ++
Sbjct: 108 EEAANAGPVTDEELRVATERHWLDLDRPEGYRTVHAVVKLPEDAGEATRDRAKAIADAIR 167

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKSLSDIS 311
                ++E     E         P    A EAF S  KG   + F  +A+          
Sbjct: 168 TAVLSSREVAQRTEPPRAAGTPQPPPDPAAEAFISAAKGVPAEGFEVVAQALSPVTEAGR 227

Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
           +    +    D + + +  SL  +GD T  +  +FG  +  +    P+  V  +E +  +
Sbjct: 228 V-LTPETQQFDPAFSRAAASLVARGDLTAPVTSAFGVHVIMLLERIPAQVVPVEERRGLV 286

Query: 372 ANQMRITKAS 381
            +++   +A 
Sbjct: 287 HDEVVADRAR 296


>gi|15645283|ref|NP_207453.1| hypothetical protein HP0659 [Helicobacter pylori 26695]
 gi|2313789|gb|AAD07729.1| predicted coding region HP0659 [Helicobacter pylori 26695]
          Length = 414

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 175 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 230

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 231 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 265

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 266 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLE 317

Query: 253 L 253
           +
Sbjct: 318 I 318


>gi|326469572|gb|EGD93581.1| peptidyl-prolyl cis-trans isomerase [Trichophyton tonsurans CBS
           112818]
 gi|326478902|gb|EGE02912.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Trichophyton equinum CBS
           127.97]
          Length = 178

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 35/120 (29%), Gaps = 27/120 (22%)

Query: 258 EKNKEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-- 294
           +++              L+                   ++ EA E      Q ++ G+  
Sbjct: 58  DRHGASGQGEGKIRASHLLIKHRESRRPSSWRESEITRSKDEAIEILRNHKQRIQSGEAS 117

Query: 295 --KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                    +   +     LG F +  +       + F+L K G+ + ++  + G  +  
Sbjct: 118 LGDIATSESDCSSARKRGDLGFFGRGEM-QAEFEQAAFAL-KVGEVSDIVETASGVHLIE 175


>gi|294507825|ref|YP_003571883.1| conserved hypothetical protein, secreted [Salinibacter ruber M8]
 gi|294344153|emb|CBH24931.1| conserved hypothetical protein, secreted [Salinibacter ruber M8]
          Length = 289

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 71/173 (41%), Gaps = 15/173 (8%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEAFQSLKKG-----KKF 296
           E  +  + ++++  +E++KE+    E    V+ L  P++  A  A Q+L+         +
Sbjct: 117 EADVRPTPEKVRTYFERHKEQLRLREPYVRVQYLAAPDRPTAQTARQALRTPPAPPDTTW 176

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA------KKGDFTPVIHGSFGYVI 350
            +L  E     +       S+ ++P   L   + +LA      ++G+ TPV+  S  Y +
Sbjct: 177 ARLVAEYATDTTRARR--LSRRFVPQSRLGQQVPALADRLADLQEGETTPVVQASGRYHV 234

Query: 351 AHVSNIKPSFTVS-FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
             +    P  T      V+  I  ++RI    +    + +RL        +++
Sbjct: 235 LRLDRRLPEGTPPELDWVEPKIRRRLRIRARKQIHATEVQRLRNRAQADGTLE 287


>gi|86153052|ref|ZP_01071257.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88596815|ref|ZP_01100052.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|157415552|ref|YP_001482808.1| hypothetical protein C8J_1232 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|85843937|gb|EAQ61147.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88191656|gb|EAQ95628.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|157386516|gb|ABV52831.1| hypothetical protein C8J_1232 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|284926513|gb|ADC28865.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|307748192|gb|ADN91462.1| probable periplasmic protein [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315932440|gb|EFV11383.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 271

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 74/234 (31%), Gaps = 59/234 (25%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
           + + F  +  +    + + ++  V V ++ +       +                     
Sbjct: 4   ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTM-------------------- 41

Query: 81  RSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           +++ +D+ K L  L++       ++ +G+  +   +   I +        NK + + F +
Sbjct: 42  KALKIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKM----LAQNKTTLNAFKA 97

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L  +  + +++  ++ K L +  +                                   
Sbjct: 98  NLKSKNQSYEQFRTNFKKDLEKRKLYEKIAS----------------------------- 128

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               A  D S+    ++FE+ KD +        +  L +  +  + I+ +   +
Sbjct: 129 ---MAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKKTI 179



 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 72/179 (40%), Gaps = 19/179 (10%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +E+++ N++    KR  Y          K + S+D  +  +E+NK+K+           +
Sbjct: 106 YEQFRTNFKKDLEKRKLYEKI---ASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYL 162

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             N +  +    + K       + + Q  SL+  +        +  + +          G
Sbjct: 163 SNNPQTLENIKNTKK------TILKPQNASLNTSNADPRLLGLLSQIPV----------G 206

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
            F+PV++G  GY +  V +   + T  +++VK ++ N     +    +++ + +L   +
Sbjct: 207 GFSPVLNGKNGYELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKI 265


>gi|261838101|gb|ACX97867.1| hypothetical protein KHP_0662 [Helicobacter pylori 51]
          Length = 411

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 172 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 227

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 228 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 262

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 263 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLE 314

Query: 253 L 253
           +
Sbjct: 315 I 315


>gi|213405975|ref|XP_002173759.1| peptidyl-prolyl cis-trans isomerase pin1 [Schizosaccharomyces
           japonicus yFS275]
 gi|212001806|gb|EEB07466.1| peptidyl-prolyl cis-trans isomerase pin1 [Schizosaccharomyces
           japonicus yFS275]
          Length = 179

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 27/117 (23%)

Query: 260 NKEKYFSPEIRTVEQLVFPNQKE---------------------ADEAFQSLKKGK-KFI 297
           N     SP    V+ L+  + +                      A    Q L+ G     
Sbjct: 61  NAPAGSSPAKIRVQHLLVKHNQSRRPSSWKEANITRSKEEAYALAKNFLQQLRSGAVTMS 120

Query: 298 QLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           +LA    +   +     LG F +  +      D+ F+L     F+ ++  S G+ I 
Sbjct: 121 ELASRESDCSSAKRGGDLGFFGRNEMQKP-FEDAAFAL-NPNQFSDIVESSSGFHII 175


>gi|167646489|ref|YP_001684152.1| SurA domain-containing protein [Caulobacter sp. K31]
 gi|167348919|gb|ABZ71654.1| SurA domain [Caulobacter sp. K31]
          Length = 452

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/408 (9%), Positives = 109/408 (26%), Gaps = 79/408 (19%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
             S    V    +     +   +         +   +   +     L+++ L +L+    
Sbjct: 57  SESVAAVVNDDIISSYDLMQRMRLL------MVTSGLQPTQENLPQLEQEALRSLIDEHV 110

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
             Q +       +  +    I+          K   +          +          + 
Sbjct: 111 QMQELRR----VEKAQKITIISTD--------KEVEEQIEDIAKGNNLT--------GQQ 150

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L++             + +  D + + +   R    + +            +  +  + E
Sbjct: 151 LTQQLRAQGVGIDTWKAQIRADSSWQAWISGRYGSRLRI-----------GDDQIKAF-E 198

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + +    +    ++S +  D           N                            
Sbjct: 199 RRQAEAASKPQYQVSEVFIDAGRVGGMETAVN---------------------------- 230

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
               A +    +++G  F  +A +      + +    G  S   +P     D+     + 
Sbjct: 231 ---GAKQLVTQMQQGAPFPAVARQFSASPTAANGGDAGWISPGEMP--PEVDAAIEQLRP 285

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF- 394
           G  +  I    G  I ++   +     +  ++K  +A  +    +  +V    K L +  
Sbjct: 286 GQLSAPIPVRDGVYIIYLREKRSGAKTALVDLK-QVALALPKDASQAQVDAANKVLLDLK 344

Query: 395 --LALGTSMDEIS-RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
             +    +++  + + E +V+ DL   +        ++ A      Q+
Sbjct: 345 PKIVNCETLEATAGKVEGVVAGDLGEAEITDLAPAFQQAANTLKVGQV 392


>gi|194466674|ref|ZP_03072661.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lactobacillus
           reuteri 100-23]
 gi|194453710|gb|EDX42607.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lactobacillus
           reuteri 100-23]
          Length = 311

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 58/200 (29%), Gaps = 45/200 (22%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           + S+  +   +  YK  Y +           D +   +   ++   L+ +   N     +
Sbjct: 70  EVSDKQVNAQYNTYKSEYGS-----------DFNAYLQSQNLTEKSLKQQIRSNL--LLT 116

Query: 267 PEIRTVEQL---------------------VFPNQKEADEAFQSLK----KGKKFIQLAE 301
              R    +                     +  ++ +A++    L     K K F +LA+
Sbjct: 117 AAARHYSHITTKQINKQWTKYQPKVQTATILVGSKSDAEDIINQLNDSSNKYKTFKKLAK 176

Query: 302 EQGKSLSDISLGSFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            +       + G     +       D +   + F L      T  +    GY + ++   
Sbjct: 177 SKSTDSQTKNNGGKLPAFDNTDNQLDSAYKKAAFKLKTGEYTTTPVKTDDGYQVIYMIEH 236

Query: 357 KPSFTVS--FQEVKKDIANQ 374
                 S    ++K  I  +
Sbjct: 237 PAKGKKSQHINDLKNQIVQE 256



 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 72/230 (31%), Gaps = 36/230 (15%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           G+  V +    K+  S + +S KQ                        K++L  ++    
Sbjct: 23  GNKAVATTNGGKITESEYYSSMKQTSA--------------------GKQVLQQMILDKV 62

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L+   +  G E    +V  +       +          F + L  + + EK         
Sbjct: 63  LE---KQYGKEVSDKQVNAQ-------YNTYKSEYGSDFNAYLQSQNLTEKSLKQQIRSN 112

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L  T     +      +  +  Q  ++  + ++   +V +      I +     L     
Sbjct: 113 LLLTAAARHY--SHITTKQINKQWTKYQPKVQTATILVGSKSDAEDIIN----QLNDSSN 166

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           KYK   +  + K       +   K    + ++++L + Y+K   K  + E
Sbjct: 167 KYKTFKKLAKSKSTDSQTKNNGGKLPAFDNTDNQLDSAYKKAAFKLKTGE 216


>gi|297379859|gb|ADI34746.1| Hypothetical protein HPV225_0667 [Helicobacter pylori v225d]
          Length = 411

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 172 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 227

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 228 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 262

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 263 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLE 314

Query: 253 L 253
           +
Sbjct: 315 I 315


>gi|57238339|ref|YP_179467.1| hypothetical protein CJE1481 [Campylobacter jejuni RM1221]
 gi|57167143|gb|AAW35922.1| conserved hypothetical protein [Campylobacter jejuni RM1221]
 gi|315058774|gb|ADT73103.1| Possible periplasmic protein [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 271

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 76/233 (32%), Gaps = 57/233 (24%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
           + + F  +  +    + + ++  V V ++ +       + K            V+  +R 
Sbjct: 4   ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTMK------------VLKIDRN 49

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
           +++G+       L++       ++ +G+  +   +   I +        NK + + F + 
Sbjct: 50  KALGV-------LINEKMEISQMKQLGIVVNDLELDDAINKM----LAQNKTTLNAFKAN 98

Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
           L  +  + +++  ++ K L +  +                                    
Sbjct: 99  LKSKNQSYEQFRANFKKDLEKRKLYEKIAS------------------------------ 128

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
              A  D S+    ++FE+ KD +        +  L +  +  + I+ +   +
Sbjct: 129 --MAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKKTI 179



 Score = 46.1 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 72/179 (40%), Gaps = 19/179 (10%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +E+++ N++    KR  Y          K + S+D  +  +E+NK+K+           +
Sbjct: 106 YEQFRANFKKDLEKRKLYEKI---ASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYL 162

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             N +  +    + K       + + Q  SL+  +        +  + +          G
Sbjct: 163 SNNPQTLENIKNTKK------TILKPQNASLNTSNADPRLLGLLSQIPV----------G 206

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
            F+PV++G  GY +  V +   + T  +++VK ++ N     +    +++ + +L   +
Sbjct: 207 GFSPVLNGKNGYELYEVKSRDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKI 265


>gi|160902886|ref|YP_001568467.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Petrotoga mobilis
           SJ95]
 gi|160360530|gb|ABX32144.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Petrotoga mobilis
           SJ95]
          Length = 558

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 12/135 (8%)

Query: 249 SNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEADEAFQS-LKKGKKFIQLAEEQGKS 306
           S  EL      N E + +  +   + ++V  ++  A+      L+    F   A +    
Sbjct: 158 SEVELSTYVSDNLENFKNEFDTVKISRIVTVDESTANNLKSEILQNNISFTDAASKNSVD 217

Query: 307 LSDISLG----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK----P 358
               S+G       +  I +     S+ S    G+    +    GY I  V + K     
Sbjct: 218 AQTASVGGLVGWVKRGDISENIFEASLSS--TPGEIIGPLSSPLGYEIVRVEDKKIYETA 275

Query: 359 SFTVSFQEVKKDIAN 373
              ++ +++K  +  
Sbjct: 276 DELLADEDIKSQLTA 290


>gi|317181972|dbj|BAJ59756.1| hypothetical protein HPF57_0682 [Helicobacter pylori F57]
          Length = 411

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 172 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 227

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 228 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 262

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 263 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLE 314

Query: 253 L 253
           +
Sbjct: 315 V 315


>gi|225431173|ref|XP_002269631.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297735030|emb|CBI17392.3| unnamed protein product [Vitis vinifera]
          Length = 118

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEA----DEAFQSLKKGKK-FIQLAE---EQGKSLSDI 310
           + K  +  PE R    +    ++ A          +  GK  F  +A    +   +    
Sbjct: 19  RRKASWRDPEGRV---IKATTKESAVTQIKAIRDDIISGKSKFSDVASQISDCSSAKRGG 75

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            LG F +  +      ++ ++L K G+ + ++    G  I 
Sbjct: 76  DLGPFGRGQMQKP-FEEATYAL-KVGEISDIVETDSGVHII 114


>gi|308184447|ref|YP_003928580.1| hypothetical protein HPSJM_03355 [Helicobacter pylori SJM180]
 gi|308060367|gb|ADO02263.1| hypothetical protein HPSJM_03355 [Helicobacter pylori SJM180]
          Length = 400

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 161 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 216

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 217 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 251

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 252 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLE 303

Query: 253 L 253
           +
Sbjct: 304 V 304


>gi|218562900|ref|YP_002344679.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|112360606|emb|CAL35403.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315928422|gb|EFV07735.1| surA N-terminal domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 271

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 74/234 (31%), Gaps = 59/234 (25%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
           + + F  +  +    + + ++  V V ++ +       +                     
Sbjct: 4   ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTM-------------------- 41

Query: 81  RSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           +++ +D+ K L  L++       ++ +G+  +   +   I +        NK + + F +
Sbjct: 42  KALKIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKM----LAQNKTTLNAFKA 97

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L  +  + +++  ++ K L +  +                                   
Sbjct: 98  NLKSKNQSYEQFRTNFKKDLEKRKLYEKIAS----------------------------- 128

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
               A  D S+    ++FE+ KD +        +  L +  +  + I+ +   +
Sbjct: 129 ---MAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKKTI 179



 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 72/179 (40%), Gaps = 19/179 (10%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +E+++ N++    KR  Y          K + S+D  +  +E+NK+K+           +
Sbjct: 106 YEQFRTNFKKDLEKRKLYEKI---ASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYL 162

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             N +  +    + K       + + Q  SL+  +        +  + +          G
Sbjct: 163 SNNPQTLENIKNTKK------TILKPQNASLNTSNADPRLLGLLSQIPV----------G 206

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
            F+PV++G  GY +  V +   + T  +++VK ++ N     +    +++ + +L   +
Sbjct: 207 SFSPVLNGKNGYELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKI 265


>gi|294656749|ref|XP_459062.2| DEHA2D13464p [Debaryomyces hansenii CBS767]
 gi|199431711|emb|CAG87230.2| DEHA2D13464p [Debaryomyces hansenii]
          Length = 177

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 47/164 (28%), Gaps = 41/164 (25%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE---YEKNKEKYFSPE--IRTVEQ 274
            K+ Y     K  S+        E      ND+LQ     Y+ N  K   PE        
Sbjct: 21  NKEYYLNQATKESSW--------EPPFGTDNDKLQKYIAKYKANGNKPVIPEDGKVRASH 72

Query: 275 LVFPNQKEA---------------DEAFQSLKK-------GK----KFIQLAEEQGKSLS 308
           ++  + +                 DEA   LK        G+           +      
Sbjct: 73  ILVKSNQSRRPKSWKYPDGITRTRDEAILLLKSYQDKILGGEISLQDLASTESDCSSHAQ 132

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
              LG F K  +   S  ++ F L   G+ + +I    G  +  
Sbjct: 133 GGDLGFFGKGQM-QPSFEEAAFGL-NVGEISDIIESDSGIHLIQ 174


>gi|332673506|gb|AEE70323.1| SurA domain protein [Helicobacter pylori 83]
          Length = 411

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 172 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 227

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 228 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 262

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 263 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLE 314

Query: 253 L 253
           +
Sbjct: 315 V 315


>gi|308271060|emb|CBX27670.1| hypothetical protein N47_H24920 [uncultured Desulfobacterium sp.]
          Length = 185

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 47/183 (25%), Gaps = 43/183 (23%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
            +  V    +    F            Q        +      + KK+L+ ++    L Q
Sbjct: 13  DIAVVNGVGIKKEDFTREL---FAFEEQYANRGEKPDEKALSDMKKKVLEKMIETELLYQ 69

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLS 160
                G + +   V         F+    +F + D F   LAR  + E    +   ++++
Sbjct: 70  ESVKNGFKVEDSTV------DEQFNKFKGQFKNADEFNKELARVKLTEASLKNQIRQVMT 123

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
               +                                  +        S+  + +++E  
Sbjct: 124 IQQYIN---------------------------------KEFVEKIKISDEEIKKFYETN 150

Query: 221 KDN 223
             +
Sbjct: 151 LKD 153


>gi|258574209|ref|XP_002541286.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Uncinocarpus reesii
           1704]
 gi|237901552|gb|EEP75953.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Uncinocarpus reesii
           1704]
          Length = 440

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 32/120 (26%), Gaps = 27/120 (22%)

Query: 258 EKNKEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-- 294
           ++               L+                    ++EA E      + +  G+  
Sbjct: 10  DRYPSASQKEGQIRASHLLIKHRDSRRPTSWREANITRTKEEAIEILNGHLKRIMAGEAT 69

Query: 295 --KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                    +   +     LG F+   +      D+ F+L K G  + ++    G  +  
Sbjct: 70  LGDIATTESDCSSARKKGDLGFFTHG-VMQKEFEDASFAL-KPGQISGIVETQSGVHLIE 127


>gi|254447838|ref|ZP_05061303.1| putative peptidyl-prolyl isomerase [gamma proteobacterium HTCC5015]
 gi|198262618|gb|EDY86898.1| putative peptidyl-prolyl isomerase [gamma proteobacterium HTCC5015]
          Length = 480

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 69/198 (34%), Gaps = 12/198 (6%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           K  Y                  + + E +   E+ A ++++K  +   E      L F +
Sbjct: 253 KQRYMQKVGLIAVLHANTSEVFKHRAEQVPQAEIAAYFKEHKADFERVERARGRHLRFAD 312

Query: 280 QKEADEAFQSLKKGKKFIQLAEE-QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
           +  A++A+ +L +G  +  +AE  Q K L+    G   +     + L   +F+       
Sbjct: 313 ESTANKAYAALHEGASYDSVAEHYQDKLLAQGDTGWIERRDREQMWLQTLLFT-QPLDTP 371

Query: 339 TPVIHGSFG------YVIAHVSNIKPSFT-VSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +              + I  V   +  +  V  + V+ +++  +     S+  K     L
Sbjct: 372 SRPFRSPQSEGEDIYWDIVIVDQRETGYPAVDSESVRYEVSQILAKAAISKDFKLLRDTL 431

Query: 392 --EEFLALGTSMDEISRR 407
                + L  ++ E+  +
Sbjct: 432 FKNALVRLNPTLLELDEQ 449


>gi|301091484|ref|XP_002895926.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Phytophthora infestans T30-4]
 gi|262096055|gb|EEY54107.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Phytophthora infestans T30-4]
          Length = 114

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 12/82 (14%)

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGK----KFIQLAEEQGKSLS---DISLGSFSKEYIP 321
                 ++   + EAD+    L +      KF QLA+E  K  S      LG+F +  + 
Sbjct: 31  QAHASHILVDTEAEADDLSVQLGEASNLFLKFAQLAKEHSKCPSSRKGGDLGTFDRGQMV 90

Query: 322 DVSLADSIFSLAKKGDFTPVIH 343
                   F    +G+   V  
Sbjct: 91  -PEFDKVAF----EGEIGVVHK 107


>gi|308063548|gb|ADO05435.1| hypothetical protein HPSAT_03485 [Helicobacter pylori Sat464]
          Length = 416

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 177 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 232

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 233 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 267

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 268 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLE 319

Query: 253 L 253
           +
Sbjct: 320 I 320


>gi|57239486|ref|YP_180622.1| hypothetical protein Erum7600 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579465|ref|YP_197677.1| hypothetical protein ERWE_CDS_08010 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161565|emb|CAH58493.1| putative membrane protein [Ehrlichia ruminantium str. Welgevonden]
 gi|58418091|emb|CAI27295.1| Hypothetical protein ERWE_CDS_08010 [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 425

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 59/166 (35%), Gaps = 24/166 (14%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M+  +R  +        + +  + F  +       + +    V  V  + +         
Sbjct: 22  MIIHMRNRT--------IGLFLLIFAFY----CSNAFANVKMVAMVNGELISSLDL---- 65

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
             E  +   K  + V+S+ A+ +      LD+L+      Q  E + +      +   + 
Sbjct: 66  --ERYIAISKFFYHVDSDVAKDIE-----LDSLIDEYIWKQEAEKLKVVVSEQEILDAVN 118

Query: 121 RSPLFHGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKMLSRTDVV 165
           +  +  G ++K +H+  F S   ++G++    I H    L    ++
Sbjct: 119 QLFVMKGSNHKENHNNDFKSYTEQQGLDYDMLIQHVKSKLLWNKIL 164


>gi|254569388|ref|XP_002491804.1| Peptidylprolyl-cis/trans-isomerase (PPIase) [Pichia pastoris GS115]
 gi|238031601|emb|CAY69524.1| Peptidylprolyl-cis/trans-isomerase (PPIase) [Pichia pastoris GS115]
 gi|328351696|emb|CCA38095.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Pichia
           pastoris CBS 7435]
          Length = 168

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 27/145 (18%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------------- 278
            Y      ++      S   L+A  E  K++   PE      L+                
Sbjct: 23  EYFYNKETQESSWEPPSGTNLEALGEYIKKRLHDPEQVRCAHLLVKHKNSRKPSSWKEPQ 82

Query: 279 ---NQKEADEAF-----QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327
               ++EA E       Q L       QLA  +    S   +  LG F ++ +   S   
Sbjct: 83  ITRTKEEAIEKLRGFQKQILDGSATLGQLAATESDCSSHARNGDLGLFGRKTM-HPSFER 141

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L + G+ + ++    G  +  
Sbjct: 142 AAFAL-QVGEISDIVESDSGVHLIE 165


>gi|219118791|ref|XP_002180162.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408419|gb|EEC48353.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 163

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 294 KKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F +LA+E+     +     LG F +  +       + F+L   G  + +I  S G  I
Sbjct: 101 ATFEELAKEESDCSSAKRGGDLGVFGRGKM-RPEFEHAAFAL-DVGQLSGLIDTSSGVHI 158

Query: 351 A 351
            
Sbjct: 159 I 159


>gi|116329122|ref|YP_798842.1| hypothetical protein LBL_2545 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330269|ref|YP_799987.1| hypothetical protein LBJ_0534 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121866|gb|ABJ79909.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123958|gb|ABJ75229.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 359

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 102/358 (28%), Gaps = 83/358 (23%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +  + +VG   +      ++ ++       K+   +  E  R   L  +I+D L+  A +
Sbjct: 48  NRVIATVGTISISELDLDDASEKYT-----KLQKHLKHEDFRK-SLRTRIIDFLIDRAIV 101

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL-AREGINEKEYIDHYTKM 158
           D   E+  ++ +  RV  EI +           +   F   +    G+  + ++      
Sbjct: 102 DVVAEEESIQVNEQRVDAEIEKRME---VMGITNRKQFEKAMETSSGMPFELWVTELPYQ 158

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           + +  ++ +                                    A+  PS   +  W+ 
Sbjct: 159 IKKGQLLQL----------------------------------KIAVPPPSEQEIKSWYN 184

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           + +D         I Y +  +  +   I+    E    Y++      S   ++V      
Sbjct: 185 QNRDK----VGFEIRYRIISIAPENDSIQ----EENRLYKE-----LSDIRKSV------ 225

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLA 333
                      L     F  +A       +  S     +     +      +  +I +  
Sbjct: 226 -----------LADPSSFALIAGSPRNDPTLRSRRGMVEWISSFDLYKYSKITATIAAPL 274

Query: 334 KKGDFTPVIHGS-FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
             G  + V       Y I  +   +P      + ++  I N +   K  +      K 
Sbjct: 275 PNGGVSEVFRDERKRYSILKIEGKRP---TPMENLRGGIQNILYRDKEEDTFYRWLKE 329


>gi|78776347|ref|YP_392662.1| hypothetical protein Suden_0146 [Sulfurimonas denitrificans DSM
           1251]
 gi|78496887|gb|ABB43427.1| hypothetical protein Suden_0146 [Sulfurimonas denitrificans DSM
           1251]
          Length = 278

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 42/167 (25%)

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA-REGINEK 149
           D L+        I++  +  D   V+ +I +        NK S D F   +    G+   
Sbjct: 52  DILIRKKLEAAEIQERKITVDSSEVYDDIKKVAA----SNKMSIDEFYDAVRDSNGLTSA 107

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
           E+ +   + +    +                                       +I  P 
Sbjct: 108 EFKEKTREKILSQKLYSAI--------------------------------AYSSINMPD 135

Query: 210 NAVLTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIE----ISND 251
              + +++E +KD +  P+    I Y   +     KKI     +S++
Sbjct: 136 EDEMREYYELHKDEFSRPKAFSVIIYSSQNEEALRKKITTPMFVSDE 182



 Score = 44.2 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 89/244 (36%), Gaps = 23/244 (9%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA-VLTQW 216
            +     +           L+  + +    + R +                SN   + ++
Sbjct: 35  DIKDEMRLSKVNATTATDILIRKKLEAAEIQERKITVDSSEVYDDIKKVAASNKMSIDEF 94

Query: 217 FEKYKD-------NYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPE 268
           ++  +D        ++    ++I             I     DE++  YE +K+++  P 
Sbjct: 95  YDAVRDSNGLTSAEFKEKTREKILSQKLYSAIAYSSINMPDEDEMREYYELHKDEFSRP- 153

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
            +    +++ +Q E     ++L+K         ++ K+   + LG           LA  
Sbjct: 154 -KAFSVIIYSSQNE-----EALRKKITTPMFVSDEIKAEERV-LGYDKIS----PELAKM 202

Query: 329 IFSLAKKGDFTPVIHGSFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
           + S  +K  FTPVI    G  +  ++   K   + S+++V+  ++N +   K  + + + 
Sbjct: 203 LESTQQKS-FTPVIMDQKGSHMSFYLVESKMPQSSSYEDVQNQLSNAIMGQKREQVLSDY 261

Query: 388 YKRL 391
           + RL
Sbjct: 262 FARL 265


>gi|227888668|ref|ZP_04006473.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200]
 gi|227850775|gb|EEJ60861.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200]
          Length = 80

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
             +    ++  +   E R V+   L        A  ++A + QW++ +  ++R  E   +
Sbjct: 2   FVTQSETERLLKLLGETRDVELAALPEVP-ADTAPVTDAQIKQWYDSHGKDFRQAESVSL 60

Query: 233 SYILFDVHEKEKKIEISND 251
            Y+  +             
Sbjct: 61  EYVEINGANLPAPTAADEA 79


>gi|224097152|ref|XP_002310854.1| predicted protein [Populus trichocarpa]
 gi|222853757|gb|EEE91304.1| predicted protein [Populus trichocarpa]
          Length = 122

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 13/101 (12%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEA----DEAFQSLKKGK-KFIQLAE---EQGKSLSDI 310
           + K  +  PE R ++      +  A        + +  GK KF  +A    +   +    
Sbjct: 23  RRKASWKDPEGRVIKN---TTRDSAISELKAIREDIVSGKAKFEDVASRISDCSSAKRGG 79

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            LG F +  +      ++ FSL K G+ + ++    G  I 
Sbjct: 80  DLGPFGRGQMQKP-FEETTFSL-KVGEISDIVDTDSGVHII 118


>gi|294789088|ref|ZP_06754327.1| putative PPIC-type PPIASE domain protein [Simonsiella muelleri ATCC
           29453]
 gi|294482829|gb|EFG30517.1| putative PPIC-type PPIASE domain protein [Simonsiella muelleri ATCC
           29453]
          Length = 315

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/340 (10%), Positives = 88/340 (25%), Gaps = 72/340 (21%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +     V    + +     + +         +     S    +  L K     L+  A L
Sbjct: 27  NGVATEVNASIITYGDIERTVRL--------LRSNPASASISNEELAKTAKQQLMERALL 78

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
               ++ GL+     +  E+ R        +    ++F     + G +   Y     K L
Sbjct: 79  VYAAKEQGLKVTSAEIDAELNRRA---TAAHTTVENLFNQT-KKLGWSRDAYRLEVAKDL 134

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
               ++                                         + S+  +  +  +
Sbjct: 135 LVGRMIDRMNES----------------------------------VEVSDNDIQAYINQ 160

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            + + +        Y +++V     KI           E NK                  
Sbjct: 161 AQKDGQVVPSGN-PYTVYNVRRIVLKIN----------ENNKA--------------AAV 195

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                   +S++ G  F  LA+   +  +    G             +++  L K G+ +
Sbjct: 196 GDRMKLIAKSVQSGSDFGTLAKRYSQEAAAAQNGVVELPENSQPEKVEAMLQLLKVGETS 255

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
             I  +  + +  +   +     +  + ++ I   +   +
Sbjct: 256 APIQTTQNWQMLQMLGKRTEIDPTKTQ-REAIRRLLVRKE 294


>gi|317153443|ref|YP_004121491.1| hypothetical protein Daes_1733 [Desulfovibrio aespoeensis Aspo-2]
 gi|316943694|gb|ADU62745.1| hypothetical protein Daes_1733 [Desulfovibrio aespoeensis Aspo-2]
          Length = 372

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 78/237 (32%), Gaps = 9/237 (3%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
            ++   F       +I+I   E +  Y      ++ PE   +  +  P+++   +A +  
Sbjct: 132 HLAMRKFFHQVLRPQIKIDYLEAERYYRDRISDFYLPESLRILVVRGPSREIVGKAVEKF 191

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           +  +  + LA   G+     +     +E        +++  L K G  + V+   FG+ I
Sbjct: 192 RAERDQVDLATAFGEVQ---TREVVLREERLSTIWKNALTGL-KAGQASGVLTDRFGFEI 247

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS-----MDEIS 405
             +    P+  +   +    +   +   K  +     +       ++  S      DE  
Sbjct: 248 LVLLERSPAKVLEPAQAYPLVEKALLEIKLQDAFDAWFSSTVARASILVSSQLLPSDEPE 307

Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
           + E     D    D    D    + A I + E++   +    D        A  +G 
Sbjct: 308 QAEPEPLTDTVEPDMLQGDGAEPDPAGIEFGEEVAPPLDTSGDAPDDAPDEASENGD 364


>gi|320167884|gb|EFW44783.1| peptidyl-prolyl cis-trans isomerase [Capsaspora owczarzaki ATCC
           30864]
          Length = 179

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQS-----LKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLAD 327
           +   + EA    Q      + K K F  +A+   +   + S   LG F    +       
Sbjct: 94  ITRTRDEALAMIQQWRAQIVNKEKTFADIAKVESDCSSAKSGGDLGFFGPGQM-QAPFEH 152

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L + G+ +  +    G  I 
Sbjct: 153 ATFAL-QVGELSEPVFTDSGVHII 175


>gi|224543042|ref|ZP_03683581.1| hypothetical protein CATMIT_02242 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524067|gb|EEF93172.1| hypothetical protein CATMIT_02242 [Catenibacterium mitsuokai DSM
           15897]
          Length = 321

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 20/123 (16%)

Query: 253 LQAEYEK-NKEKYFSPEIRTVEQLVFPN----------QKEADEAFQSLKKGKKFIQLAE 301
           ++  Y+   ++ Y     R +  +              +++  E  + LK GK F  +A+
Sbjct: 138 VKTHYDTVFEDYYKVATPRMISMIKISVSDPSNPTDSEKEKLKEVQELLKDGKSFGDVAK 197

Query: 302 EQGKS----LSDISLGSFSKEY----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           +         +  SLG              ++ ++ FSL + G  + V+ G+ GY I   
Sbjct: 198 DYSDDSTTKSAKGSLGVVDTTSNLTNTYGSTINEAAFSLTE-GQTSDVLTGNDGYYILKC 256

Query: 354 SNI 356
           ++ 
Sbjct: 257 TST 259


>gi|19746356|ref|NP_607492.1| foldase protein PrsA [Streptococcus pyogenes MGAS8232]
 gi|46396947|sp|Q8P0E5|PRSA1_STRP8 RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|19748552|gb|AAL97991.1| putative protease maturation protein [Streptococcus pyogenes
           MGAS8232]
          Length = 351

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 77/239 (32%), Gaps = 18/239 (7%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T V+ M    +  S+   +       +   ++ ++            S   + + + K 
Sbjct: 29  NTKVISMKGDTISVSDFYNETKNTEVSQKAMLNLVISRVFEAQYGDKVSKKEVEKAYHKT 88

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT--------- 271
            + Y A     ++         +++I  S     A  E  K++  + E +          
Sbjct: 89  AEQYGASFSAALAQSSLTPETFKRQIRSSKLVEYAVKEAAKKELTTQEYKKAYESYTPTM 148

Query: 272 -VEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSL-SDISLGSFSKEYIPDVSLADS 328
            VE +   N + A    + LK  G  F  +A+E+  +    ++    S        +  +
Sbjct: 149 AVEMITLDNDETAKSVLEELKAEGADFTAIAKEKTTTPEKKVTYKFDSGAINVPTDVVKA 208

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             SL + G                + I  V+  K      +QE KK +   +   K+ +
Sbjct: 209 ASSLNEGGISDVISVLDPTSYQKKFYIVKVTK-KAEKKSDWQEYKKRLKAIIIAEKSKD 266


>gi|321253954|ref|XP_003192910.1| transcriptional elongation regulator [Cryptococcus gattii WM276]
 gi|317459379|gb|ADV21123.1| transcriptional elongation regulator, putative [Cryptococcus gattii
           WM276]
          Length = 178

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 19/108 (17%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
            KI I  DE QA  EK+           +  L      +  + F  +   +       + 
Sbjct: 86  DKITIPPDEAQAIIEKH-----------IAYLQSLPPADVPKEFARIASTES------DC 128

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
             +     LG F +  +      D+ F+    G  + ++    G  + 
Sbjct: 129 SSAKKGGDLGWFGRGQMQKP-FEDATFN-TPVGQLSGIVKTDSGIHVI 174


>gi|294669049|ref|ZP_06734135.1| conserved hypothetical protein [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309041|gb|EFE50284.1| conserved hypothetical protein [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 244

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 8/158 (5%)

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           Y         K + +S+ E  A Y           I  + Q+ F    EA  A Q L KG
Sbjct: 89  YASQYEEHLVKTVSVSDSEALAAYGNLTR------IVKLAQVRFATADEARAAQQLLLKG 142

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
             F +L E                  +P V +A+ + ++ K       +     + +  +
Sbjct: 143 LSFEKLMERYPNPDQPAMQEPLPIGRLP-VEIANIVGNMQKGDVSREPVAYQNEFYLFKI 201

Query: 354 SNIKPSF-TVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           +  + +     F++VK+ +  Q++  KA E++ +  K 
Sbjct: 202 TASEQAQDAPPFEQVKEAVIRQVKQQKAQEQIDQLLKA 239


>gi|225856639|ref|YP_002738150.1| foldase protein PrsA [Streptococcus pneumoniae P1031]
 gi|254783416|sp|C1CK62|PRSA_STRZP RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|225725282|gb|ACO21134.1| foldase protein PrsA [Streptococcus pneumoniae P1031]
          Length = 313

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 62/196 (31%), Gaps = 20/196 (10%)

Query: 203 PAIADPSNAVLTQWFEKYKDN-----YRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
               D + A   + + +             E ++       + E   K     +     Y
Sbjct: 76  DKEVDDTIAEEKKQYGENYQRVLSQAGMTLETRKAQIRTSKLVELAVKKVAEAELTDEAY 135

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLG--- 313
           +K  ++Y      T + +   N+ +A E  +  K  G  F QLA++          G   
Sbjct: 136 KKAFDEYTPD--VTAQIIRLNNEDKAKEVLEKAKAEGADFAQLAKDNSTDEKTKENGGEI 193

Query: 314 -SFSKEYIPDVSLADSIFSLAKKGDFTPVIH------GSFGYVIAHVSNIKPSFTVSFQE 366
              S        +  + F+L   G  + VI        S  Y I  ++      + +  +
Sbjct: 194 TFDSASTEVPEQVKKAAFALDVDG-VSDVITATGTQAYSSQYYIVKLTKKTE-KSSNIDD 251

Query: 367 VKKDIANQMRITKASE 382
            K+ +   +   K ++
Sbjct: 252 YKEKLKTVILTQKQND 267


>gi|188586655|ref|YP_001918200.1| SurA domain [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351342|gb|ACB85612.1| SurA domain [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 232

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 61/180 (33%), Gaps = 11/180 (6%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           + K+ L+ L    L           +    V  V  Q++        +KQ+L  + Q  G
Sbjct: 3   IKKVVLIALSALLLFV----LTACGNDDEVVAIVNDQELKEEDLDR-FKQQLIQMRQLYG 57

Query: 73  FVV-NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
             V   +  +   L K+ ++ +V+   L Q  E+ G+  D   V  E+        ++  
Sbjct: 58  MPVDEEDEEQMDELQKEAVEEMVTETVLLQKAEEEGITVDEELVENELEAI-----ENQF 112

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
            S +     L   G+  ++            +++   V     S   ++ ++    E   
Sbjct: 113 ESDEQMEEALDMYGLTSEDLESEIRNSYMIEELITGLVDEDDISQDDIEISEEELRERYE 172


>gi|226227553|ref|YP_002761659.1| putative peptidyl-prolyl cis-trans isomerase [Gemmatimonas
           aurantiaca T-27]
 gi|226090744|dbj|BAH39189.1| putative peptidyl-prolyl cis-trans isomerase [Gemmatimonas
           aurantiaca T-27]
          Length = 469

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 53/174 (30%), Gaps = 39/174 (22%)

Query: 247 EISNDELQAEYEK------------NKEKYFSPEIRTVEQLVFPNQ------------KE 282
           +I N  ++  Y+             ++ +Y S E      ++   +            K+
Sbjct: 92  QIDNIRVKKFYDNVSKGWDSLSPGTDESRYMSGEALAARHILVKTEPNATPEQIGVAKKK 151

Query: 283 ADEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           AD           F  LA    E G       LG F +  +        +  L K G+ +
Sbjct: 152 ADGILAE-ATTANFAVLAAKSDEPGAKERGGDLGLFQRGMMV-PEFEKCLLVL-KPGEIS 208

Query: 340 -PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             V   SFG+ I +           F +V +  A   +    +        +LE
Sbjct: 209 KEVCQTSFGFHIIY--------RSPFADVAEKFAPVAKQRNVAIAESTYLAKLE 254


>gi|261378344|ref|ZP_05982917.1| conserved hypothetical protein [Neisseria cinerea ATCC 14685]
 gi|269145450|gb|EEZ71868.1| conserved hypothetical protein [Neisseria cinerea ATCC 14685]
          Length = 252

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 62/182 (34%), Gaps = 18/182 (9%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           +  +   F+  + ++ A EY R           E+   +S  EL   Y++          
Sbjct: 83  DQGVQNRFKIAEASFYAQEYVRF---------LERSETVSESELHQFYDRQTRMI----- 128

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI 329
             ++Q+ F  + EA +A Q L KG  F  L +    +        F         L+  +
Sbjct: 129 -KLQQVGFATEDEARQAQQLLLKGLSFEGLMKRYPNNEQAFD--DFIMAQQLPEPLSSRL 185

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
             + +       +     Y +  +S + K      F+ V+  +   ++  K   K+    
Sbjct: 186 ADMNRGDVTRDPVKLGERYYLFKLSEVGKNPDAQPFELVRNQLEQGLKQEKVRLKIDALL 245

Query: 389 KR 390
           + 
Sbjct: 246 EE 247


>gi|225376261|ref|ZP_03753482.1| hypothetical protein ROSEINA2194_01899 [Roseburia inulinivorans DSM
           16841]
 gi|225211907|gb|EEG94261.1| hypothetical protein ROSEINA2194_01899 [Roseburia inulinivorans DSM
           16841]
          Length = 340

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 91/262 (34%), Gaps = 31/262 (11%)

Query: 145 GINEKEYIDHYTK---MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
           GI  +EY         + ++  ++     GM  S    D  ++ + E  +     + +  
Sbjct: 80  GITPEEYARERALKNIVETKNILLLAKEAGMAESVSYSD-IRKDWKEFVAARKNAVESNE 138

Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
           +  +  P     + ++           Y      L    + +    +   E +  YE +K
Sbjct: 139 I--VYGPVEMSFSDYYS----------YYISKIKLEMFEQYKVDNRLQESETRQYYESHK 186

Query: 262 EKYFSPEIRTVEQLVFPNQKEAD--------EAFQSLKKGKKFIQLAEEQGK-SLSDISL 312
           E +   +   +  LV+     AD        +  + ++   +     E  G+   +++++
Sbjct: 187 ELFSQGDE--ISLLVYSVPDAADGNGESTLRQIKKEIEVNGRIQSEKERIGQYDETELAI 244

Query: 313 GSFS--KEYIPDVSLADSIFSLAKKGDFTPVI-HGSFGYVIAHVSNIKPSFTVSFQEVKK 369
           G  S   +   +    ++++ L   G+ + V    S GY        K    +S+ EV+ 
Sbjct: 245 GEMSNKGDSRSNSIYLEAVYGL-NAGEISDVYYDDSIGYYAVRYLGRKEGSGLSYDEVRN 303

Query: 370 DIANQMRITKASEKVKEDYKRL 391
            + + +   +    + +  + L
Sbjct: 304 RLEDMIMTEQFQRYLTDREEEL 325


>gi|317180456|dbj|BAJ58242.1| hypothetical protein HPF32_0660 [Helicobacter pylori F32]
          Length = 411

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 172 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 227

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 228 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 262

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 263 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLE 314

Query: 253 L 253
           +
Sbjct: 315 V 315


>gi|15902928|ref|NP_358478.1| foldase protein PrsA [Streptococcus pneumoniae R6]
 gi|116517083|ref|YP_816350.1| foldase protein PrsA [Streptococcus pneumoniae D39]
 gi|148984724|ref|ZP_01817992.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|148988426|ref|ZP_01819873.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992883|ref|ZP_01822502.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|148998582|ref|ZP_01826022.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|149002533|ref|ZP_01827467.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|149006340|ref|ZP_01830052.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|149019573|ref|ZP_01834892.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP23-BS72]
 gi|168491071|ref|ZP_02715214.1| foldase protein PrsA [Streptococcus pneumoniae CDC0288-04]
 gi|169834173|ref|YP_001694426.1| foldase protein PrsA [Streptococcus pneumoniae Hungary19A-6]
 gi|221231743|ref|YP_002510895.1| foldase protein PrsA precursor [Streptococcus pneumoniae ATCC
           700669]
 gi|225854485|ref|YP_002735997.1| foldase protein PrsA [Streptococcus pneumoniae JJA]
 gi|225861132|ref|YP_002742641.1| foldase protein PrsA [Streptococcus pneumoniae Taiwan19F-14]
 gi|237821321|ref|ZP_04597166.1| foldase protein PrsA [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229543|ref|ZP_06963224.1| foldase protein PrsA [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254488|ref|ZP_06978074.1| foldase protein PrsA [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|307127469|ref|YP_003879500.1| foldase protein PrsA [Streptococcus pneumoniae 670-6B]
 gi|46396912|sp|Q8DQ24|PRSA_STRR6 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|122278764|sp|Q04KU8|PRSA_STRP2 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|226712007|sp|B1IBE1|PRSA_STRPI RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|254783414|sp|B8ZPD9|PRSA_STRPJ RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|254783415|sp|C1CDX6|PRSA_STRZJ RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|254783417|sp|C1CRR9|PRSA_STRZT RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|15458489|gb|AAK99688.1| Proteinase maturation protein [Streptococcus pneumoniae R6]
 gi|116077659|gb|ABJ55379.1| protease maturation protein, putative [Streptococcus pneumoniae
           D39]
 gi|147755580|gb|EDK62627.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|147759470|gb|EDK66462.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|147762117|gb|EDK69079.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|147923115|gb|EDK74230.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|147926107|gb|EDK77181.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928335|gb|EDK79351.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|147930948|gb|EDK81928.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP23-BS72]
 gi|168996675|gb|ACA37287.1| foldase protein PrsA [Streptococcus pneumoniae Hungary19A-6]
 gi|183574699|gb|EDT95227.1| foldase protein PrsA [Streptococcus pneumoniae CDC0288-04]
 gi|220674203|emb|CAR68731.1| foldase protein PrsA precursor [Streptococcus pneumoniae ATCC
           700669]
 gi|225723485|gb|ACO19338.1| foldase protein PrsA [Streptococcus pneumoniae JJA]
 gi|225726693|gb|ACO22544.1| foldase protein PrsA [Streptococcus pneumoniae Taiwan19F-14]
 gi|301794118|emb|CBW36524.1| foldase protein PrsA precursor [Streptococcus pneumoniae INV104]
 gi|301799956|emb|CBW32539.1| foldase protein PrsA precursor [Streptococcus pneumoniae OXC141]
 gi|306484531|gb|ADM91400.1| foldase protein PrsA [Streptococcus pneumoniae 670-6B]
 gi|332076253|gb|EGI86719.1| PPIC-type PPIASE domain protein [Streptococcus pneumoniae GA41301]
 gi|332204982|gb|EGJ19047.1| PPIC-type PPIASE domain protein [Streptococcus pneumoniae GA47901]
          Length = 313

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 62/196 (31%), Gaps = 20/196 (10%)

Query: 203 PAIADPSNAVLTQWFEKYKDN-----YRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
               D + A   + + +             E ++       + E   K     +     Y
Sbjct: 76  DKEVDDTIAEEKKQYGENYQRVLSQAGMTLETRKAQIRTSKLVELAVKKVAEAELTDEAY 135

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLG--- 313
           +K  ++Y      T + +   N+ +A E  +  K  G  F QLA++          G   
Sbjct: 136 KKAFDEYTPD--VTAQIIRLNNEDKAKEVLEKAKAEGADFAQLAKDNSTDEKTKENGGEI 193

Query: 314 -SFSKEYIPDVSLADSIFSLAKKGDFTPVIH------GSFGYVIAHVSNIKPSFTVSFQE 366
              S        +  + F+L   G  + VI        S  Y I  ++      + +  +
Sbjct: 194 TFDSASTEVPEQVKKAAFALDVDG-VSDVITATGTQAYSSQYYIVKLTKKTE-KSSNIDD 251

Query: 367 VKKDIANQMRITKASE 382
            K+ +   +   K ++
Sbjct: 252 YKEKLKTVILTQKQND 267


>gi|254367995|ref|ZP_04984015.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica 257]
 gi|134253805|gb|EBA52899.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica 257]
          Length = 92

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLAD 327
              L+  ++ E  +  + + +GK  F + A +     S      LG+FS+  +       
Sbjct: 5   ARHLLVQSEYECQQIKKDITEGKITFEEAARKHSLCPSGARGGDLGTFSQGQMV-PEFDR 63

Query: 328 SIFS--LAKKGDFTPVIHGSFGYVIAHVSNI 356
            +F+  L K       +   FGY +  +++ 
Sbjct: 64  VVFNDELHK---VHGPVQTQFGYHLLEITSR 91


>gi|15900858|ref|NP_345462.1| foldase protein PrsA [Streptococcus pneumoniae TIGR4]
 gi|111657958|ref|ZP_01408665.1| hypothetical protein SpneT_02000847 [Streptococcus pneumoniae
           TIGR4]
 gi|149010372|ref|ZP_01831743.1| peptidylprolyl isomerase [Streptococcus pneumoniae SP19-BS75]
 gi|182683926|ref|YP_001835673.1| peptidylprolyl isomerase [Streptococcus pneumoniae CGSP14]
 gi|225858774|ref|YP_002740284.1| foldase protein PrsA [Streptococcus pneumoniae 70585]
 gi|303254448|ref|ZP_07340554.1| foldase protein PrsA [Streptococcus pneumoniae BS455]
 gi|303259894|ref|ZP_07345869.1| peptidylprolyl isomerase [Streptococcus pneumoniae SP-BS293]
 gi|303262308|ref|ZP_07348252.1| peptidylprolyl isomerase [Streptococcus pneumoniae SP14-BS292]
 gi|303264730|ref|ZP_07350648.1| peptidylprolyl isomerase [Streptococcus pneumoniae BS397]
 gi|303269142|ref|ZP_07354921.1| peptidylprolyl isomerase [Streptococcus pneumoniae BS458]
 gi|46397004|sp|Q97R51|PRSA_STRPN RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|226712008|sp|B2IPD4|PRSA_STRPS RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|254783413|sp|C1C6V8|PRSA_STRP7 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|14972456|gb|AAK75102.1| putative protease maturation protein [Streptococcus pneumoniae
           TIGR4]
 gi|147764853|gb|EDK71782.1| peptidylprolyl isomerase [Streptococcus pneumoniae SP19-BS75]
 gi|182629260|gb|ACB90208.1| peptidylprolyl isomerase [Streptococcus pneumoniae CGSP14]
 gi|225721397|gb|ACO17251.1| foldase protein PrsA [Streptococcus pneumoniae 70585]
 gi|302598615|gb|EFL65655.1| foldase protein PrsA [Streptococcus pneumoniae BS455]
 gi|302636631|gb|EFL67122.1| peptidylprolyl isomerase [Streptococcus pneumoniae SP14-BS292]
 gi|302639099|gb|EFL69559.1| peptidylprolyl isomerase [Streptococcus pneumoniae SP-BS293]
 gi|302641329|gb|EFL71697.1| peptidylprolyl isomerase [Streptococcus pneumoniae BS458]
 gi|302645817|gb|EFL76046.1| peptidylprolyl isomerase [Streptococcus pneumoniae BS397]
          Length = 313

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 62/196 (31%), Gaps = 20/196 (10%)

Query: 203 PAIADPSNAVLTQWFEKYKDN-----YRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
               D + A   + + +             E ++       + E   K     +     Y
Sbjct: 76  DKEVDDTIAEEKKQYGENYQRVLSQAGMTLETRKAQIRTSKLVELAVKKVAEAELTDEAY 135

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLG--- 313
           +K  ++Y      T + +   N+ +A E  +  K  G  F QLA++          G   
Sbjct: 136 KKAFDEYTPD--VTAQIIRLNNEDKAKEVLEKAKAEGADFAQLAKDNSTDEKTKENGGEI 193

Query: 314 -SFSKEYIPDVSLADSIFSLAKKGDFTPVIH------GSFGYVIAHVSNIKPSFTVSFQE 366
              S        +  + F+L   G  + VI        S  Y I  ++      + +  +
Sbjct: 194 TFDSASTEVPEQVKKAAFALDVDG-VSDVITATGTQAYSSQYYIVKLTKKTE-KSSNIDD 251

Query: 367 VKKDIANQMRITKASE 382
            K+ +   +   K ++
Sbjct: 252 YKEKLKTVILTQKQND 267


>gi|19074283|ref|NP_585789.1| PEPTIDYL PROLYL CIS TRANS ISOMERASE (NIMA-INTERACTING)
           [Encephalitozoon cuniculi GB-M1]
 gi|19068925|emb|CAD25393.1| PEPTIDYL PROLYL CIS TRANS ISOMERASE (NIMA-INTERACTING)
           [Encephalitozoon cuniculi GB-M1]
          Length = 150

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 31/136 (22%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIR-----TVEQLVFPNQKE-------ADEAFQSLKK- 292
           I++ + E  + Y  N E     E R      +  ++  ++K         DEAF  +K  
Sbjct: 15  IKLKDKETGSPYFYNTETAERTEKRPNEGFRLYHILIKHEKSRKPVDMSIDEAFSRIKAI 74

Query: 293 ---------GKKFIQLAEEQ-------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
                     K F +L +E          +     LG      +         FSL + G
Sbjct: 75  HEDLRAKAGDKNFRELFKEAAIKHSQCSSAKRGGDLGFVCGNEMMK-EFEKPAFSLGR-G 132

Query: 337 DFTPVIHGSFGYVIAH 352
           + +  +    G+ I +
Sbjct: 133 EMSGPVSTPSGFHIIY 148


>gi|317009325|gb|ADU79905.1| hypothetical protein HPIN_03345 [Helicobacter pylori India7]
          Length = 411

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 172 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 227

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 228 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 262

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 263 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLE 314

Query: 253 L 253
           +
Sbjct: 315 V 315


>gi|167523994|ref|XP_001746333.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775095|gb|EDQ88720.1| predicted protein [Monosiga brevicollis MX1]
          Length = 140

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 21/107 (19%)

Query: 271 TVEQLVFPNQKE---ADEAFQSLKKGKK---------FIQLAEEQGKSL--SDISLGSFS 316
            V  ++     +   A E  ++  K +          + Q+A E  +    S  +LG  +
Sbjct: 35  EVRHILCEKHGKCMQALEKLRAAYKPEDGKPQSGLGVWTQVAMEFSEDKARSGGNLGWMT 94

Query: 317 KEYIPDVSLADSIFSLA---KKGDFT---PVIHGSFGYVIAHVSNIK 357
           +  +      D+ FS+      G      P +   FGY I  V+  K
Sbjct: 95  RGGMVGP-FQDTAFSMPITKPSGPVIFTDPPVKTKFGYHIIMVTGRK 140


>gi|84500986|ref|ZP_00999221.1| PPIC-type PPIASE domain protein [Oceanicola batsensis HTCC2597]
 gi|84391053|gb|EAQ03471.1| PPIC-type PPIASE domain protein [Oceanicola batsensis HTCC2597]
          Length = 402

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 20/146 (13%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGATL 99
           S  + V  + V         +                   R+ G +D    D L+     
Sbjct: 26  SPAIKVNDKVVTEFELDQRTRMLR--------------LFRTPGDIDALAADQLIDDRLR 71

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q  E+IG+     ++   +A    F G+ N  S + FV+ L + G+  + + D     +
Sbjct: 72  MQAAEEIGISPSEDQI---MAGMEEFAGRAN-LSAEQFVAALQQAGVAPESFRDFVRAGV 127

Query: 160 S-RTDVVGMFVGGMRPSNLLLDQAKR 184
           + R  +   F   ++ S   +D+A  
Sbjct: 128 AWRETIRARFGPRIQISEQQIDRALA 153


>gi|261839514|gb|ACX99279.1| peptidoglycan-associated lipoprotein precursor [Helicobacter pylori
           52]
          Length = 426

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 187 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 242

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 243 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 277

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 278 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLE 329

Query: 253 L 253
           +
Sbjct: 330 V 330


>gi|38258219|sp|Q94G00|PIN1_MALDO RecName: Full=Peptidyl-prolyl cis-trans isomerase Pin1;
           Short=PPIase Pin1; AltName: Full=MdPin1; AltName:
           Full=Rotamase Pin1
 gi|15077233|gb|AAK83088.1|AF290200_1 Pin1-type peptidyl-prolyl cis/trans isomerase [Malus x domestica]
          Length = 121

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 13/102 (12%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQLAEEQG---KSLSDI 310
           + K  +  PE + +       +  A    ++L+        KF  LA        +    
Sbjct: 22  RRKASWKDPEGQIIRN---TTRDSAVSQLKALRDDILSGKAKFDDLAARYSDCSSAKRGG 78

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            LG F +  +      ++ F+L K G+ + ++    G  I  
Sbjct: 79  DLGPFGRNQMQKP-FEEATFAL-KVGEMSDIVDTDSGVHIIK 118


>gi|269118730|ref|YP_003306907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sebaldella
           termitidis ATCC 33386]
 gi|268612608|gb|ACZ06976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sebaldella
           termitidis ATCC 33386]
          Length = 306

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 89/280 (31%), Gaps = 50/280 (17%)

Query: 148 EKEYIDHYTKMLSRTDVVG---MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
            KE +D   K + +                     D       +  ++    L  +    
Sbjct: 62  PKEQLDAQKKAIIKQLAFYKSIALSPEAAKLKATKDYKMALGLQEDTL-LTGLFLKDKVK 120

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
               ++    ++++  K  +   +                       +LQ  Y   +   
Sbjct: 121 DIKVTDEETKKFYDDNKSAFTRQDNI--------------------ADLQLIYLPYRSD- 159

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYIPD- 322
                          + +AD      K+ K  F  LA++     +  + G  +     D 
Sbjct: 160 -------------DEKAQADRVLAEAKQNKDKFGDLAKQYSADKTSGANGGVTGPLPLDK 206

Query: 323 -----VSLADSIFSLAKKGDFTP--VIHGSFGYVIAHVSNIK-PSFTVSFQEVKKDIANQ 374
                  + D+  + A   +  P  VI G    VI  V+  +     V +++V+K+IA Q
Sbjct: 207 LGADFAPIKDAAINGA-VNEVAPNLVILGGDTAVIVKVNKKELKGEVVKYEDVQKNIAFQ 265

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
           ++  K +E+  +  K + +   L  S+D++   EK    D
Sbjct: 266 LKQKKIAEEQAKIEKEIVDKYDL-NSIDQLKLEEKAADKD 304


>gi|172065639|ref|YP_001816351.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
 gi|171997881|gb|ACB68798.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
          Length = 279

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 7/152 (4%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
             +++DE++  Y +   +   P    V Q+ F ++  A  A   L+KG+ F  +A     
Sbjct: 112 QPVTDDEVRQRYNEIVSQIG-PYQYKVSQMSFADEPTARFALALLEKGESFANVATRSHA 170

Query: 306 SLSDISLGSFSKEYIPDVSLA-----DSIFSLAKKGDFT-PVIHGSFGYVIAHVSNIKPS 359
           S +  S  SF +      +L          +  + G FT   +H    +++A +   + +
Sbjct: 171 SDAQTSWISFRQPVKDGQTLGLPLPLAQALATMQPGQFTNAPLHVGDRFIVARLDERRDT 230

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
              S+ +    +   M   +  +       +L
Sbjct: 231 VIPSYTQASAAMRKAMESKRNGDAFVTFIGQL 262


>gi|45658827|ref|YP_002913.1| hypothetical protein LIC13000 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45602072|gb|AAS71550.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 293

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 8/140 (5%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
           EL++ +  N++K+       V      ++  A    + L+      +       ++  I 
Sbjct: 141 ELRSYFLLNRDKFLKTSRYQVMVYQQSDEVSATRISKELR------EAGRTMAPNVYYIP 194

Query: 312 LGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
                   + D    D + +L   K G+ +  I     + +  V  ++P  T  F  VKK
Sbjct: 195 NTLLPLRKLLDYLGPDVVLALGNLKSGEVSDPIKSGEKFFVVKVFVLEPGSTPDFDSVKK 254

Query: 370 DIANQMRITKASEKVKEDYK 389
           ++       K    ++E   
Sbjct: 255 EVEASYIQEKGDRTLREYLD 274


>gi|194897597|ref|XP_001978686.1| GG19723 [Drosophila erecta]
 gi|190650335|gb|EDV47613.1| GG19723 [Drosophila erecta]
          Length = 169

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQ-----SLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA    +      +++   F +LA        S     LG F +  +   +  +
Sbjct: 84  ITRTKEEAQMLLEVYRNKIVQQEATFDELARSYSDCSSSKRGGDLGKFGRGQM-QAAFEE 142

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F L   G  + ++    G  I 
Sbjct: 143 AAFKL-NVGQLSGIVDSDSGLHII 165


>gi|262195599|ref|YP_003266808.1| hypothetical protein Hoch_2377 [Haliangium ochraceum DSM 14365]
 gi|262078946|gb|ACY14915.1| hypothetical protein Hoch_2377 [Haliangium ochraceum DSM 14365]
          Length = 339

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 21/169 (12%)

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ--- 298
                     EL   YE  K +Y  P +R    L  P  ++++      ++ K  +    
Sbjct: 141 YPDPASAPRAELLEVYEALKGQYVRPALRHTAFLRVPVAEDSEAGGDEDRQAKALVDEIY 200

Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLA------------------DSIFSLAKKGDFTP 340
            A  +   L    L    KE   +  +                   +   SL + G   P
Sbjct: 201 AAVRERDDLETAELERVGKEIAGEREVEVLRAPLAYPGARLVPEYLEPALSLTEPGTVAP 260

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
                +G+ I  ++ ++P+   S  EV  ++    +     + ++   +
Sbjct: 261 PARTQWGWDIILLTELEPALDRSPDEVIDELFQLWQRRAFQQWLRALRE 309



 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 42/139 (30%), Gaps = 4/139 (2%)

Query: 497 EEVSSKANQLVLEYSK----EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
            +  +  +++     +    E      +GK +            +         + +   
Sbjct: 190 RQAKALVDEIYAAVRERDDLETAELERVGKEIAGEREVEVLRAPLAYPGARLVPEYLEPA 249

Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
            S         P      + +  +T  +    +  D+ I  L Q+  +      +  L+ 
Sbjct: 250 LSLTEPGTVAPPARTQWGWDIILLTELEPALDRSPDEVIDELFQLWQRRAFQQWLRALRE 309

Query: 613 QYSVTVHDNLIQRYLDGEK 631
             +VT+H + +  +   E+
Sbjct: 310 PAAVTIHQDTLAAFQQAEE 328


>gi|325523302|gb|EGD01656.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           TJI49]
          Length = 295

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 62/162 (38%), Gaps = 15/162 (9%)

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
           A E   I+  L           I++++++A Y++        E +    +   +  +A +
Sbjct: 115 AKESVMIAAYL---EANVHPAAITDEQVRARYDELVASLGKKEYKP-RVIATKDAADAWK 170

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLADSIFSLAK 334
           A  +LK G+ F  +A++     S  + G+                     LA +I  L  
Sbjct: 171 ALAALKHGQSFDAVAQQYSVIPSKTAGGAMPWVSFKLPVAEGHTQGLPFRLAQAISRLKP 230

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
            G     +     ++I  +  ++P+  +SF E K+ +   ++
Sbjct: 231 GGVTPQPVLADNMHLIVKLDAVRPTKALSFDEAKEALRKTLQ 272


>gi|164659402|ref|XP_001730825.1| hypothetical protein MGL_1824 [Malassezia globosa CBS 7966]
 gi|159104723|gb|EDP43611.1| hypothetical protein MGL_1824 [Malassezia globosa CBS 7966]
          Length = 172

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 29/117 (24%)

Query: 262 EKYFSPEIRTVEQLVFPNQKE--------------ADEAFQSLKKGK----------KFI 297
            +   P       L+  ++                 DEA   L++ +           F 
Sbjct: 54  SQSNRPAQVRASHLLVKHRDSRRPSSWREPTITRTKDEAITQLREFQQQLGSQPNVQTFS 113

Query: 298 QLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           QLA +      + S   LGSFS+  +      D+ F L+  G+ + ++    G  + 
Sbjct: 114 QLAGQYSDCSSARSGGDLGSFSRGQM-QRPFEDAAFGLS-VGEMSDIVETDSGVHLI 168


>gi|56807615|ref|ZP_00365517.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Streptococcus
           pyogenes M49 591]
          Length = 324

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 77/239 (32%), Gaps = 18/239 (7%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
              V+ M    +  S+   +       +   ++ ++            S   + + + K 
Sbjct: 2   NNKVISMKGDTISVSDFCNETKNTEVSQKAMLNLVISRVFEAQYGDKVSKKEVEKAYHKT 61

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT--------- 271
            + Y A     ++         +++I  S     A  E  K++  + E +          
Sbjct: 62  AEQYGASFSAALAQSSLTPETFKRQIRSSKLVEYAVKEAAKKELTTQEYKKAYESYTPTM 121

Query: 272 -VEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSL-SDISLGSFSKEYIPDVSLADS 328
            VE +   N++ A    + LK  G  F  +A+E+  +    ++    S        +  +
Sbjct: 122 AVEMITLDNEETAKSVLEELKAEGADFTAIAKEKTTTPEKKVTYKFDSGATNVPTDVVKA 181

Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
             SL + G                + I  V+  K      +QE KK +   +   K+ +
Sbjct: 182 ASSLNEGGISDVISVLDPTSYQKKFYIVKVTK-KAEKKSDWQEYKKRLKAIIIAEKSKD 239


>gi|219124233|ref|XP_002182413.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406374|gb|EEC46314.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 76

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 296 FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFS-LAKKGDFTPVIHGSFGYVIA 351
           F + A++     S     +LG F +  +       + FS ++K G+    I   FG+ + 
Sbjct: 13  FAKYAKKYSACPSKNQGGNLGKFKQGAMA-PPFDKACFSPISKVGETLGPIQTQFGWHLI 71

Query: 352 HVSNI 356
           ++ + 
Sbjct: 72  YIQSR 76


>gi|315586661|gb|ADU41042.1| SurA domain protein [Helicobacter pylori 35A]
          Length = 405

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 166 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 221

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 222 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 256

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 257 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLE 308

Query: 253 L 253
           +
Sbjct: 309 V 309


>gi|289672777|ref|ZP_06493667.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae FF5]
          Length = 79

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGD 337
           +EA++    + KG+ F  LA++     S      LG      +   ++   IF    +  
Sbjct: 2   EEAEQLKLRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVG-AIDQVIFKKPLR-V 59

Query: 338 FTPVIHGSFGYVIAHV 353
               I   FGY +  V
Sbjct: 60  VHGPIKSKFGYHLVQV 75


>gi|217033711|ref|ZP_03439138.1| hypothetical protein HP9810_5g53 [Helicobacter pylori 98-10]
 gi|216943900|gb|EEC23337.1| hypothetical protein HP9810_5g53 [Helicobacter pylori 98-10]
          Length = 411

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 172 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 227

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 228 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 262

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 263 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLE 314

Query: 253 L 253
           +
Sbjct: 315 V 315


>gi|311032420|ref|ZP_07710510.1| molecular chaperone lipoprotein [Bacillus sp. m3-13]
          Length = 97

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
               ++ +SL +  + +  +   +G+ I  V++ K      F+++K ++  ++ ++K +E
Sbjct: 3   PEFEEAAYSL-EVNEISEPVESMYGFHIIKVTDKKDKE--PFEDMKAELKEEVLLSKVNE 59

Query: 383 KVK 385
           +  
Sbjct: 60  EAS 62


>gi|222629721|gb|EEE61853.1| hypothetical protein OsJ_16521 [Oryza sativa Japonica Group]
          Length = 200

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKE-ADEAFQSLKKGK-KFIQLAEEQG---KSLSDISLG 313
           + K  +  PE   +      +  + A    + +  G+ KF  +A E+     +     LG
Sbjct: 101 RRKASWRDPEGVAISATTRDDAADLARALREKIVAGERKFEDVATEESDCNSAKRGGDLG 160

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F +  +   +   ++ +L K G+ + V+    G  I 
Sbjct: 161 PFERGKM-QKAFEKAVLAL-KVGEISDVVDTDSGVHII 196


>gi|317178978|dbj|BAJ56766.1| hypothetical protein HPF30_0669 [Helicobacter pylori F30]
          Length = 416

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 177 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 232

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 233 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 267

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 268 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLE 319

Query: 253 L 253
           +
Sbjct: 320 V 320


>gi|88809809|ref|ZP_01125315.1| hypothetical protein WH7805_10548 [Synechococcus sp. WH 7805]
 gi|88786193|gb|EAR17354.1| hypothetical protein WH7805_10548 [Synechococcus sp. WH 7805]
          Length = 284

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 59/203 (29%), Gaps = 30/203 (14%)

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
            R    +   +     +  PS+  L    E + + + +        +  D   + +++  
Sbjct: 101 RRLRQKMEFVSHGEQPLTPPSDQQLQAHLEAHPERFMSEPRFSFQQVFLDPSRRGERLN- 159

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
                                R  E LV    + AD A      G      +        
Sbjct: 160 ---------------------RDAEALVVELNQ-ADAAADPSSLGDPLAMASASWQGERR 197

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
              L  F        +  D++     +G +   I  ++G  +  VS+I P       +V+
Sbjct: 198 SELLAQFG------TTFTDAL-QQQPQGRWVGPISSAYGMHLVRVSSITPGELPPLDQVR 250

Query: 369 KDIANQMRITKASEKVKEDYKRL 391
           + +    +  +     +  Y+ L
Sbjct: 251 EGVLRDWQDVQRQNHQESYYRNL 273


>gi|320163725|gb|EFW40624.1| NIMA-interacting 1 [Capsaspora owczarzaki ATCC 30864]
          Length = 191

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQS-----LKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  ++ EA    Q      + K K F  +A+   +   + S   LG F    +       
Sbjct: 106 ITRSRDEALAMIQQWRAQIVNKEKTFADIAKVESDCSSAKSGGDLGFFGPGQM-QAPFEH 164

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L + G+ +  +    G  I 
Sbjct: 165 ATFAL-QVGELSEPVFTDSGVHII 187


>gi|256085044|ref|XP_002578734.1| rotamase [Schistosoma mansoni]
 gi|238664117|emb|CAZ34972.1| rotamase, putative [Schistosoma mansoni]
          Length = 154

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 285 EAFQSLKKGK-KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           +  Q ++ G+  F +LA    +   + S   L  FS+  +      D+ F L + G+   
Sbjct: 82  KIKQQIESGEYTFEELARTESDCSSAHSGGDLNFFSRGQMQKP-FEDAAFKL-EIGEMCG 139

Query: 341 VIHGSFGYVIAH 352
            ++   G  +  
Sbjct: 140 PVYTDSGIHLIK 151


>gi|307109392|gb|EFN57630.1| hypothetical protein CHLNCDRAFT_50865 [Chlorella variabilis]
          Length = 118

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           G + S   LG F +  +   +  D+ F+L + G+ +  +    G  I 
Sbjct: 69  GSARSGGDLGWFGRGQM-QKAFEDAAFAL-QVGELSQPMFSDSGCHII 114


>gi|115525297|ref|YP_782208.1| hypothetical protein RPE_3295 [Rhodopseudomonas palustris BisA53]
 gi|115519244|gb|ABJ07228.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 305

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 70/254 (27%), Gaps = 40/254 (15%)

Query: 15  KIFLVVLFVPFLI-----WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
            I L +  + F        GLS  L +    S VV V  + +                  
Sbjct: 1   MIALRLSRLCFAFALLLTTGLSTELRA---QSVVVMVNGEPITSYDIDQR---------- 47

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
                +     R     +++++ L++     +  +  G++     +    A      G  
Sbjct: 48  ---SKLTQLSTRKTPPRQEVIEELINEKVKIKEGKKFGIDPSGADIDSSFANM----GSR 100

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDVVGMFVGGMRPSNLLLDQA------ 182
            + S +     LA  GI            +   + V G F   +      +  A      
Sbjct: 101 MRMSPEQLTQTLANSGIRPDTLKHRMRAEMVWTSLVRGRFKDSLLVGEKDIQAALGDSDK 160

Query: 183 ---KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
              + F ++ R V  +++     PA  +             +   +  E     +     
Sbjct: 161 PAGESFEYQMRPV-VLIVPRNAAPASREARMKEAEAL----RARVQTCEEANALFKSMPN 215

Query: 240 HEKEKKIEISNDEL 253
                 +  ++ +L
Sbjct: 216 AAIRATVSKTSADL 229


>gi|224438394|ref|ZP_03659321.1| hypothetical protein HcinC1_10416 [Helicobacter cinaedi CCUG 18818]
 gi|313144836|ref|ZP_07807029.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129867|gb|EFR47484.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 276

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 71/199 (35%), Gaps = 23/199 (11%)

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS-NDEL 253
             L+   + A        L ++  K K   +  E                 I IS  DEL
Sbjct: 88  ANLSKDALLAKVTRDGTTLQEYRNKIKKQLQTKE--------LMQRILASNISISSEDEL 139

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
            + Y K+K+++  P    V +    N+        +++  K  IQ  ++  +++S  SL 
Sbjct: 140 LSYYTKHKKEFLLPSSVRVVRYTAQNEG---NLQNAIQSPKTTIQGVQKINETISLSSLS 196

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIKPSFTVSFQEVKKDIA 372
                      +A  +F      +FTPV+      +V   V        +SF E K  I 
Sbjct: 197 ---------PQIAQ-VFLNTPNNEFTPVLTTGGNSFVSFLVKERLGEKAISFDEAKPLIN 246

Query: 373 NQMRITKASEKVKEDYKRL 391
            ++   K    + E + ++
Sbjct: 247 QKIMAQKEQSIITEHFNKI 265



 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 66/216 (30%), Gaps = 56/216 (25%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +   + V    +  S         +  +  ++               K  +D L++    
Sbjct: 21  AGVAIRVNGHAITLSE--------ISKLQTQMKIS-----------KKAAIDMLINERLK 61

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           D  IE   +  D  ++  EI++       +   S D  ++++ R+G   +EY +   K L
Sbjct: 62  DDEIERFKISIDEFKIDEEISQIAA----NANLSKDALLAKVTRDGTTLQEYRNKIKKQL 117

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
              +++   +                                   I+  S   L  ++ K
Sbjct: 118 QTKELMQRILAS--------------------------------NISISSEDELLSYYTK 145

Query: 220 YKDNYRAPEY-KRISYILFDVHEKEKKIEISNDELQ 254
           +K  +  P   + + Y   +    +  I+     +Q
Sbjct: 146 HKKEFLLPSSVRVVRYTAQNEGNLQNAIQSPKTTIQ 181


>gi|166031177|ref|ZP_02234006.1| hypothetical protein DORFOR_00863 [Dorea formicigenerans ATCC
           27755]
 gi|166029024|gb|EDR47781.1| hypothetical protein DORFOR_00863 [Dorea formicigenerans ATCC
           27755]
          Length = 353

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 112/375 (29%), Gaps = 91/375 (24%)

Query: 35  FSVSGSSTVVSVGRQKV-----------PFSSFINSWKQELGMISQKIGFVVNSERARSV 83
            S+ G  TV +V   K+             +++   +   LG          +       
Sbjct: 23  GSLKGDETVATVDDTKIDADLANFFARYTQATYETYYSAYLG--EDMWNSDASDGETYEE 80

Query: 84  GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
            +   +L +L     L++ +ED  +          I  +                  L  
Sbjct: 81  SVKSSVLKSLEDMILLEKHMEDYDVSITDED-KAMIKETT--------------QQFLND 125

Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
             +++K  +    K ++R   +      MR                              
Sbjct: 126 NSLDDKNLVSGNEKTVNRALTLMAVQQKMR------------------------TAIQAG 161

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
           A  + S+    Q         ++ +Y  ISY      +     ++S+DE           
Sbjct: 162 ADTEVSDEEAAQ---------KSMDYVFISY--QTKDDSGNSKDVSDDE----------- 199

Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
                           + +A+     LK+G     LAEEQG ++   +L        PD 
Sbjct: 200 ------------KAQLKSQAEAIASGLKEGGDLNALAEEQGATVQ--TLTFDKDTTSPDE 245

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
            L  +  +L + G+ T VI    G  +A V+++           K  I  + +     + 
Sbjct: 246 DLIKAADALGE-GESTDVIETEKGCYVAKVTSLLDRTAT--DSKKSQIVQERQTKLYDDT 302

Query: 384 VKEDYKRLEEFLALG 398
           VK+  K+ +  +  G
Sbjct: 303 VKKWRKKADIKVHKG 317



 Score = 38.8 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
           ++ S+A  +     KEG +   + +  GA++ T       D +      D I    +   
Sbjct: 202 QLKSQAEAIASGL-KEGGDLNALAEEQGATVQTLT----FDKDTTSPDEDLIKAADALGE 256

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                  IE      V KVT   +      D   S + Q     L D  +   + +  + 
Sbjct: 257 GES-TDVIETEKGCYVAKVT--SLLDRTATDSKKSQIVQERQTKLYDDTVKKWRKKADIK 313

Query: 618 VH 619
           VH
Sbjct: 314 VH 315


>gi|157864608|ref|XP_001681014.1| PPIase; peptidyl-prolyl cis-trans isomerase/rotamase [Leishmania
           major strain Friedlin]
 gi|68124307|emb|CAJ07069.1| putative PPIase [Leishmania major strain Friedlin]
          Length = 115

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 288 QSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           QS+  GK  F + A ++    S      LG F    +      D+  SL + G  + ++ 
Sbjct: 46  QSINDGKVTFEEAARQRSDCSSYARGGDLGVFGPGEMMKP-FEDATKSL-EVGQVSGIVV 103

Query: 344 GSFGYVIAH 352
              G  I  
Sbjct: 104 TDSGVHIIK 112


>gi|294827676|ref|NP_710751.2| hypothetical protein LA_0570 [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293385519|gb|AAN47769.2| hypothetical protein LA_0570 [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 279

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 8/140 (5%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
           EL++ +  N++K+       V      ++  A    + L+      +       ++  I 
Sbjct: 130 ELRSYFLLNRDKFLKTSRYQVMVYQQSDEVSATRISKELR------EAGRTMAPNVYYIP 183

Query: 312 LGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
                   + D    D + +L   K G+ +  I     + +  V  ++P  T  F  VKK
Sbjct: 184 NTLLPLRKLLDYLGPDVVLALGNLKSGEVSDPIKSGEKFFVVKVFVLEPGSTPDFDSVKK 243

Query: 370 DIANQMRITKASEKVKEDYK 389
           ++       K    ++E   
Sbjct: 244 EVEASYIQEKGDRTLREYLD 263


>gi|326436433|gb|EGD82003.1| peptidylprolyl cis/trans isomerase [Salpingoeca sp. ATCC 50818]
          Length = 168

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 273 EQLVFPNQKEADEA----FQSLKKGK-KFIQLAE---EQGKSLSDISLGSFSKEYIPDVS 324
           EQ +   ++EA +      Q +  GK  F  +A    +   +     LG F+ + +    
Sbjct: 80  EQNITRTKEEAIDIIKKHRQDIVDGKVTFEDVARTESDCSSAKRGGDLGPFTHDKMQKP- 138

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            AD+ F+L + G+ + V+    G  I  
Sbjct: 139 FADAAFAL-EVGELSDVVISDSGVHIIK 165


>gi|213419168|ref|ZP_03352234.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 170

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
                +      L  +IL+ L+    + Q  + +G++    ++   IA       K N  
Sbjct: 54  GQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNM 109

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR 184
           + D   SRLA +G+N   Y +   K +  ++V        +      +D   +
Sbjct: 110 TMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAK 162


>gi|295660186|ref|XP_002790650.1| peptidyl-prolyl cis-trans isomerase ssp1 [Paracoccidioides
           brasiliensis Pb01]
 gi|34979129|gb|AAQ83700.1| peptidyl-prolyl cis/trans isomerase [Paracoccidioides brasiliensis]
 gi|226281525|gb|EEH37091.1| peptidyl-prolyl cis-trans isomerase ssp1 [Paracoccidioides
           brasiliensis Pb01]
          Length = 190

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAFQS----LKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  +++EA E  +     ++ G+           +   +     LG F +  +      +
Sbjct: 105 ITRSKEEALEILRRHEESIRSGEKTLGDIAMSESDCSSARKRGDLGFFGRGEM-QAEFEE 163

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L + G  + ++  + G  +  
Sbjct: 164 AAFAL-EPGQVSGIVETASGVHLIE 187


>gi|270308377|ref|YP_003330435.1| protein export protein [Dehalococcoides sp. VS]
 gi|270154269|gb|ACZ62107.1| protein export protein [Dehalococcoides sp. VS]
          Length = 421

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/422 (12%), Positives = 126/422 (29%), Gaps = 59/422 (13%)

Query: 6   RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSFINSW 60
           +K  +  +    L V+ +   + G+               +TV++VG  K   + F+++ 
Sbjct: 24  QKKRQRIIFATGLSVIGIVLALVGIGVYKGWYVEQYKPMHTTVLTVGDTKYNVAYFVDAL 83

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           K                +   +      + + +     + +   ++G       +   I 
Sbjct: 84  K-----------HFTGGDSTYAYYFIDAVAERIQLNQLMVEKAAEMGYTISEDEIDTAIE 132

Query: 121 RS-----PLFHGKDNKFSHDVFVSRLAREGINEK-----EYIDHYTKMLSRTDVVGMFVG 170
            +     P            +  + L  E  + +     E  +    +L   +     + 
Sbjct: 133 ENSLNDVPAVRDIV---RASLLTNMLKTEYFDPQVPQTAEQREALAMLLESENAASEVLA 189

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
           G+        +A     E+ +                P+N  +T  +          E  
Sbjct: 190 GITTDEEFAAKAAELSLESNT------KTDEGAIDFKPAN-TITSLYGS-----AILEKY 237

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
             S   +D    +   ++S         +  E+    E      ++ P+++ A E    L
Sbjct: 238 VFSTTGYDYTLVQD-ADVSKQRA-YWLIEVLERKTDSEQIHTLGMLLPSEQVALEVKARL 295

Query: 291 KKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFSLAKK-GDFTPVIHGS 345
           + G+ +  LA E  +      +   +   +   +P+ ++AD IF+   +       I   
Sbjct: 296 EAGEDWGDLAVEYSQLANVEENRGDMDWITFSSVPE-NVADIIFATDVELNTVLDPIQDD 354

Query: 346 FGYV-----IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
             Y      I  + +I  +      E+ +D    +   K  +   +      + L    S
Sbjct: 355 TNYTRGGCWIVRLKSIDENR-----ELNEDDRTLLINNKLEQWTTDLKNANLDKLTNTFS 409

Query: 401 MD 402
            D
Sbjct: 410 DD 411


>gi|332297435|ref|YP_004439357.1| basic membrane protein [Treponema brennaborense DSM 12168]
 gi|332180538|gb|AEE16226.1| basic membrane protein [Treponema brennaborense DSM 12168]
          Length = 360

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/319 (11%), Positives = 92/319 (28%), Gaps = 53/319 (16%)

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
            K+IL+ ++    + Q     G+     ++                    +      + G
Sbjct: 64  KKEILNGMIDEKLVVQAAMKNGINITDAQINDYFLSYMSQQIGQTVTEVQLAKLVKEQTG 123

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           ++  +YI     M                   L +       +  +  YI+   +     
Sbjct: 124 MSLDDYIKGQVGM------------------GLAEYKSYLKNQLIAQQYILSLKQSEVQK 165

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
             P++  +  ++E  K ++       +  +   V  K    + +  ++   ++  K K  
Sbjct: 166 IAPTDEEIRAFYEMSKSSFV---QSDVLKLFLVVVPKNDDEKAARKKITGMFDDVKSKKL 222

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
           + +     Q    + +  D             Q A++ G +   + L  F+K+       
Sbjct: 223 TADKIKALQQSDSSFQAGDLYVSKT------AQAAQQLGINYQGL-LELFTKDT------ 269

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK---------KDIANQMR 376
                     G  + +      +    V N   +  ++  +V          + I   + 
Sbjct: 270 ----------GFISDLNETDTDFQFYIVRNKYDAKMLTLSDVVQPDSTVTVYEYIRQNLT 319

Query: 377 ITKASEKVKEDYKRLEEFL 395
             K S+ +    + + E L
Sbjct: 320 AQKQSQFLVAAVQEVTESL 338


>gi|313901026|ref|ZP_07834514.1| putative lipoprotein [Clostridium sp. HGF2]
 gi|312953984|gb|EFR35664.1| putative lipoprotein [Clostridium sp. HGF2]
          Length = 292

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 74/209 (35%), Gaps = 22/209 (10%)

Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN---- 223
             G ++ S    +       +    + I ++   +   A+ S   L   +     +    
Sbjct: 46  IYGLIKTSAGANETLSLIKTQIYKKENIKVS-DAMKKEAEESVKSLKSMYGDSLQDTLKQ 104

Query: 224 --YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
             +   E  +   I   + +KE   +    + +A ++              + L   ++K
Sbjct: 105 YGFDNLEQYKEKSIYPGLQQKELNKKYVKAKEKAMFDSYYP-------VKAQILEADSKK 157

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           +A+ A ++LK GK F  + +E G +           SK  +P     D I S  KKG   
Sbjct: 158 KAENALKALKDGKDFKAVVKEYGSTTTYKGTEEIYNSKSGLPTTVF-DKIKSTNKKGLIE 216

Query: 340 PVIH--GSFGYVIAHVSNIKPSFTVSFQE 366
            V+    S  Y +  V+N  P     F+E
Sbjct: 217 SVMEDTSSKKYYVVKVTNATP---KDFEE 242


>gi|58617519|ref|YP_196718.1| hypothetical protein ERGA_CDS_07920 [Ehrlichia ruminantium str.
           Gardel]
 gi|58417131|emb|CAI28244.1| Hypothetical protein ERGA_CDS_07920 [Ehrlichia ruminantium str.
           Gardel]
          Length = 425

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 54/149 (36%), Gaps = 16/149 (10%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           + +  + F  +       + +    V  V  + +           E  +   K  + V+S
Sbjct: 31  IGLFLLIFAFY----CSNAFANVKMVAMVNGELISSLDL------ERYIAISKFFYHVDS 80

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV- 136
           + A+ +      LD+L+      Q  E + +      +   + +  +  G ++K +H+  
Sbjct: 81  DVAKDI-----ALDSLIDEYIWKQEAEKLKVVVSEQEILDAVNQLFVMKGSNHKENHNND 135

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVV 165
           F S   ++G++    I H    L    ++
Sbjct: 136 FKSYTEQQGLDYDMLIQHVKSKLLWNKIL 164


>gi|319789892|ref|YP_004151525.1| SurA domain protein [Thermovibrio ammonificans HB-1]
 gi|317114394|gb|ADU96884.1| SurA domain protein [Thermovibrio ammonificans HB-1]
          Length = 282

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 92/269 (34%), Gaps = 48/269 (17%)

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFEN----------RSVDYIVLNNRHVPAIADPS 209
           S+  VV      +    +L     RF  EN          R ++  +L  +        S
Sbjct: 17  SQAKVVDYIAAVVNGQPILYSDVVRFARENHINNLRVALDRLIEREILLTQARSEGISVS 76

Query: 210 NAVLT-QWFE-KYKDNYRAPEYKR--------------------ISYILFDVHEKEKKIE 247
           +  L     E   K+ +++ E  +                    +        +   K++
Sbjct: 77  DKELKTALLELARKNGFKSLEEFKKALEKEGIPFSRVEESVKDQLIVAKLIARDVRSKVK 136

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
           +S+ EL     K + K   PE R V  +   N+ +A++A + L  G  F ++A E  +  
Sbjct: 137 VSDIELDKLCLKVEGK---PE-REVYYIYTKNRADAEKAMELLANGVPFQKVARELSQDP 192

Query: 308 ----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               +   LG  S   +      D +    K G +  V     GY I +V   K      
Sbjct: 193 MTAQNGGYLGYVSPGMLVKPL--DRVVWSIKPGSYRLVRLKD-GYYIVYVKGEKRGQCN- 248

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392
               ++ +  Q+   +  + +KE  + L+
Sbjct: 249 ----REKLREQLFAQRFQKALKEYIENLK 273



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 24/142 (16%)

Query: 43  VVSVGRQKVPFSSFIN-SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
              V  Q + +S  +  + +  +  +                      LD L+    L  
Sbjct: 26  AAVVNGQPILYSDVVRFARENHINNLR-------------------VALDRLIEREILLT 66

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
                G+      +   +        K+   S + F   L +EGI      +     L  
Sbjct: 67  QARSEGISVSDKELKTALLE---LARKNGFKSLEEFKKALEKEGIPFSRVEESVKDQLIV 123

Query: 162 TDVVGM-FVGGMRPSNLLLDQA 182
             ++       ++ S++ LD+ 
Sbjct: 124 AKLIARDVRSKVKVSDIELDKL 145


>gi|88811164|ref|ZP_01126420.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
           Nb-231]
 gi|88791703|gb|EAR22814.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
           Nb-231]
          Length = 250

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 12/141 (8%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLS 308
           ++ +Q  +  N  K+   E   +  +V  ++ +A E     ++    F +LA E      
Sbjct: 108 DEAIQEYFSLNSPKF---EGIEISHIVVDSENKAREILSLAEEEPDMFAELAREHSLDDD 164

Query: 309 DISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHG--SFGYVIAHVSNIKPS--FT 361
               G    + +       +   +F+ A  G+            Y I  V    P+   T
Sbjct: 165 TKHNGGLVGKVLRGELQDEIEAKVFN-ASAGELLGPFQTPDELFYEIFKVEARHPAILDT 223

Query: 362 VSFQEVKKDIANQMRITKASE 382
            + +EV++ +       +A E
Sbjct: 224 ETEKEVRRLVYRAWLEARAQE 244


>gi|67539950|ref|XP_663749.1| hypothetical protein AN6145.2 [Aspergillus nidulans FGSC A4]
 gi|40738741|gb|EAA57931.1| hypothetical protein AN6145.2 [Aspergillus nidulans FGSC A4]
          Length = 210

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 12/91 (13%)

Query: 270 RTVEQLVFPNQKEADEAF----QSLKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIP 321
           R  E  +   ++EA E      + + +G+           +   +     LG F +  + 
Sbjct: 92  REAE--ITRTKEEAREILRGHQERIMRGEIRLGDLAMSESDCSSARKKGDLGFFGRGEM- 148

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                ++ F+L + G  + ++    G  +  
Sbjct: 149 QKEFEEAAFAL-QPGQVSDIVESGSGLHLIE 178


>gi|58264984|ref|XP_569648.1| transcriptional elongation regulator [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134109581|ref|XP_776905.1| hypothetical protein CNBC3960 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259585|gb|EAL22258.1| hypothetical protein CNBC3960 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57225880|gb|AAW42341.1| transcriptional elongation regulator, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 178

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 19/108 (17%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
            KI I++DE QA  E++           +  L      +  + F  +   +       + 
Sbjct: 86  DKITITSDEAQAIIEQH-----------IAYLQSLPPADLPKEFAKIASTES------DC 128

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
             +     LG F +  +      D+ F+    G  + ++    G  + 
Sbjct: 129 SSARKGGDLGWFGRGQMQKP-FEDATFN-TPVGQLSGIVKTDSGIHVI 174


>gi|154274143|ref|XP_001537923.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Ajellomyces capsulatus
           NAm1]
 gi|150415531|gb|EDN10884.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Ajellomyces capsulatus
           NAm1]
          Length = 181

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAFQ----SLKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  +++EA E  +     ++ G+           +   +     LG F +  +       
Sbjct: 96  ITRSKEEALEILRGHERRIRAGEATLGDIAMSESDCSSARKKGDLGFFGRGEM-QTEFEG 154

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L + G  + ++  + G  +  
Sbjct: 155 AAFAL-QPGQVSGIVETASGVHLIE 178


>gi|147119|gb|AAA24304.1| unknown [Escherichia coli str. K-12 substr. W3110]
          Length = 98

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
           + G +     LG  + + I D +  D++  L  KG  +  +H SFG+ +  + + + +  
Sbjct: 1   DPGSANQGGDLGWATPD-IFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVD 57

Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390
            +    K      +   K SE+     + 
Sbjct: 58  KTDAAQKDRAYRMLMNRKFSEEAASWMQE 86


>gi|218195767|gb|EEC78194.1| hypothetical protein OsI_17801 [Oryza sativa Indica Group]
          Length = 106

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKE-ADEAFQSLKKGK-KFIQLAEEQG---KSLSDISLG 313
           + K  +  PE   +      +  + A    + +  G+ KF  +A E+     +     LG
Sbjct: 7   RRKASWRDPEGVAISATTRDDAADLARALREKIVAGERKFEDVATEESDCNSAKRGGDLG 66

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F +  +   +   ++ +L K G+ + V+    G  I 
Sbjct: 67  PFERGKM-QKAFEKAVLAL-KVGEISDVVDTDSGVHII 102


>gi|17647355|ref|NP_523428.1| dodo [Drosophila melanogaster]
 gi|12644017|sp|P54353|DOD_DROME RecName: Full=Protein dodo
 gi|1147599|gb|AAC46958.1| dodo [Drosophila melanogaster]
 gi|7295516|gb|AAF50829.1| dodo [Drosophila melanogaster]
 gi|255760114|gb|ACU32641.1| SD16185p [Drosophila melanogaster]
          Length = 166

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQ-----SLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA    +      +++   F +LA        +     LG F +  +   +  D
Sbjct: 81  ITRTKEEAQLLLEVYRNKIVQQEATFDELARSYSDCSSAKRGGDLGKFGRGQM-QAAFED 139

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F L      + ++    G  I 
Sbjct: 140 AAFKL-NVNQLSGIVDSDSGLHII 162


>gi|220928515|ref|YP_002505424.1| hypothetical protein Ccel_1085 [Clostridium cellulolyticum H10]
 gi|219998843|gb|ACL75444.1| hypothetical protein Ccel_1085 [Clostridium cellulolyticum H10]
          Length = 209

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 57/177 (32%), Gaps = 34/177 (19%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVS------------------GSSTVVSVGRQKVPFSSF 56
           K+ ++ +    LI+G+    FS S                  G   V ++  + +    F
Sbjct: 9   KVVIIAVTAVILIFGIVGYTFSKSESAAKFFGIKQSQTLTKAGKDIVATINGENITKKGF 68

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            N++K  +                 +   DK+ILD +V    +       G      +V 
Sbjct: 69  -NTYKAMINS--------------ENKLSDKEILDRIVESHVVYTQAVKEGFRVSDHQVE 113

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
             I  +       +   +  F   ++   ++E EY +       +  + G +   ++
Sbjct: 114 AAIKSARE-EISMDSKQYKAFKEYISGLKMSEDEYWESVKPTYKKALIRGAYKNALK 169


>gi|62946413|ref|YP_227618.1| hypothetical protein all7316 [Nostoc sp. PCC 7120]
 gi|17134515|dbj|BAB77074.1| all7316 [Nostoc sp. PCC 7120]
          Length = 263

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/189 (11%), Positives = 63/189 (33%), Gaps = 23/189 (12%)

Query: 209 SNAVLTQW---FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
           +   +  W   +    +  +    +++    F       +       L++ + K K+   
Sbjct: 71  TAEKIKDWCLRYGLNAEKLKLLATRKLRVEKFKQINWRHQ-------LESYFLKRKKYL- 122

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYIPD-- 322
             +      +   N+   +E F  + +G+  F +LA +  +       G      +    
Sbjct: 123 --DRVIYSLIQTENKSVVNELFFRIAEGEDSFAELARKYSQGAEADRGGIIGPVELGSIT 180

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            + A  +++ ++ G   P +     +VI  V  + P+    F      +  ++      +
Sbjct: 181 PNFAQLLYT-SQVGVVQPPVAFGNTWVIVRVEKLIPAQLDDF------MRQRLLQENFED 233

Query: 383 KVKEDYKRL 391
             ++   +L
Sbjct: 234 WFQQQLNQL 242


>gi|221103350|ref|XP_002155257.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 149

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 34/130 (26%)

Query: 254 QAEY---EKNKEKYFSPE----IRTVEQLVFP-----------------NQKEADEAFQ- 288
           +  Y   E N+ ++  P+          L+                    ++EA +  + 
Sbjct: 18  KKYYFNTETNESQWEKPDNEEFQVRASHLLVKHKGSRRPSSWKQNVITRTEEEALDIIKN 77

Query: 289 ---SLKKGKK-FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
               +  GK     LA+ +       +   LG F    +   S  ++ F+L K  + +  
Sbjct: 78  YHKQITSGKTTLAALAQSESDCNSGKNGGDLGFFGPGQM-QKSFEEAAFAL-KINEMSGP 135

Query: 342 IHGSFGYVIA 351
           ++   G  + 
Sbjct: 136 VYSDSGIHLI 145


>gi|254478727|ref|ZP_05092097.1| hypothetical protein CDSM653_484 [Carboxydibrachium pacificum DSM
           12653]
 gi|214035341|gb|EEB76045.1| hypothetical protein CDSM653_484 [Carboxydibrachium pacificum DSM
           12653]
          Length = 238

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 17/131 (12%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           ++    +  V    +  + F               G  + S   ++  +D  +L  L+  
Sbjct: 61  INKGDVIAEVNGIPIYKNEFELRK-----------GLALASG-VQADNIDDYVLQKLIKE 108

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF--SHDVFVSRLAREGINEKEYIDH 154
              +       +      +   I +      + N++  +       +   G+ E EY + 
Sbjct: 109 KVQEYLASKYNIRVSESEINEYIEKE---KKEFNEYPEAKKKLDELINASGMTEDEYWNT 165

Query: 155 YTKMLSRTDVV 165
           Y +  +R  ++
Sbjct: 166 YERYNARRILL 176


>gi|293400823|ref|ZP_06644968.1| hypothetical protein HMPREF0863_01108 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305849|gb|EFE47093.1| hypothetical protein HMPREF0863_01108 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 294

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 13/147 (8%)

Query: 233 SYILFDVHEKEKKIEIS---NDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           SY      E  +K       N EL  +Y  +  K  +          +    Q+ A++A 
Sbjct: 107 SYGFNSEEEYLEKASYPSLLNKELLKKYAKDNQKTLFEKYHPVKANVIQVEKQENAEKAL 166

Query: 288 QSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            +LKKG     +A++ GK+          FS   +PDV  +  I + + KG    VI  +
Sbjct: 167 AALKKGDSAKTVAKKYGKTGTYDGSEKIYFSGSGLPDVVFSK-ITATSSKGLIKEVIEDT 225

Query: 346 FG--YVIAHVSNIKPSFTVSFQEVKKD 370
            G  Y + +++NI PS   SF +   D
Sbjct: 226 EGKTYYLVNLTNIDPS---SFADEAND 249


>gi|254514852|ref|ZP_05126913.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
 gi|219677095|gb|EED33460.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
          Length = 258

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 4/165 (2%)

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-QKEADE 285
           P  + +   L       +  E S  +L   Y  N ++Y+S    +  Q +  +  +  ++
Sbjct: 85  PSIRELVIELMQQQVTGEIPEPSGKDLVNFYTDNMDRYYSEATISFSQRLLRDAPQTPEQ 144

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
             + L +G         QGK   D   G      +   SL D +  L    D+       
Sbjct: 145 LREQLNQGDVIGDDVPWQGKDFPD--YGVSMIRGLFGQSLLDVLEQLP-VQDWQGPYPSP 201

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            G+    V   +    ++F+ V+  +    +    S  V E    
Sbjct: 202 DGWHYFRVERRQQPVLLAFERVRDQVLADYQAAAVSASVAEFVDA 246


>gi|188527492|ref|YP_001910179.1| hypothetical protein HPSH_03560 [Helicobacter pylori Shi470]
 gi|188143732|gb|ACD48149.1| hypothetical protein HPSH_03560 [Helicobacter pylori Shi470]
          Length = 426

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
            +  E+ +S     +  D L++    +Q IE + +  D  ++  E+A      G      
Sbjct: 187 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 242

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            D F   L  EG   K Y D   + L   +++   +                        
Sbjct: 243 LDHFKQMLMAEGHY-KLYRDQLKEHLEMQELLRNIL------------------------ 277

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE 252
                   +  +   S   + +++ K+K+ +  P E + + Y   +  + E+ +   N E
Sbjct: 278 --------LTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADHNLE 329

Query: 253 L 253
           +
Sbjct: 330 I 330


>gi|262068174|ref|ZP_06027786.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291378117|gb|EFE85635.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 563

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 74/621 (11%), Positives = 180/621 (28%), Gaps = 73/621 (11%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFINS 59
           +   RK  + ++  +  VV  +     G      S     +   + + +  +       +
Sbjct: 3   IRKFRKQMKPFII-VLTVVFILSLAYGGYESYRTSKINKKAQEAMLLNKDYIQKIDIERA 61

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            ++              +E      +D    ++++         + + ++     V    
Sbjct: 62  KQEVARAY---------AETVDKDIVDIIAFNDVIDKKLTLDLAKSLKVKVPSSEVN--- 109

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
           A+             + F   L  +G+ +    +   + L        F   + P++  +
Sbjct: 110 AQYEELESSMG--DKEQFRRMLQVQGLTKDSLKNKIEENLLMQKTREEFAKNINPTDEEI 167

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           +     Y                 +I           ++  K      E  +++ I    
Sbjct: 168 NAYMSLY-----------------SIPSDKKEDAISLYKMEKGE----EAFKLALIKARK 206

Query: 240 HEKEKKIEISNDEL--QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK--- 294
             + K +    + L  +  YE++  K  + ++  +      NQK   E  + L K     
Sbjct: 207 EMEIKDLAPEYENLIEKVAYEEDGFKITNLDLAKIMTTFMINQKATKEQAEELAKNMITK 266

Query: 295 --KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             K  ++A+++G  +++  L   S+     V L++ +    K  D    +   F      
Sbjct: 267 QIKVAKMAKDKGVKVNE-ELDLMSQLQEYAVGLSEKVREEIKPTD--AELESFFNSNKTR 323

Query: 353 VS-NIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
            + +      + F  VK     +++   KA + + E     E F   G S+      + +
Sbjct: 324 YNISETADAKLVFLNVKSTKEDDELAKDKAEKLLAELTP--ENFTEKGKSLGN---NQDV 378

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
           +  DL          + +E         ++ +V          +  A  +     V+   
Sbjct: 379 IYQDLGTFGTKAMVKEFEEALKDVPSNTIVNKVIKTKFGYHVAYVKANDNNQQWSVEHIL 438

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
            +P                + + KT  E   K N+L  +         D           
Sbjct: 439 IVP----------------YPSEKTVTEKLEKLNKLKADIETGTIALNDKIDEDAIQSFD 482

Query: 531 TNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
              I       +  +  +    ++  P++ V      N  + V+F+ T            
Sbjct: 483 AKGITPDGVIPDFVYSPEIAKAIYETPLDKVGIIN-PNRATIVIFQKTKEVKAQEANFTN 541

Query: 590 FISYLTQMMNKDLLDSVIAYL 610
               + +      +   ++ L
Sbjct: 542 LKEEVRKDYINKKVAEYMSKL 562


>gi|326492403|dbj|BAK01985.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326502962|dbj|BAJ99109.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 302

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 23/159 (14%)

Query: 272 VEQLVFPNQKEAD---EAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
           V+ L+   +K+A    +  +S+  G     LA E     S      LG   +  +     
Sbjct: 99  VQHLLV-GEKDARLLVDLEKSIASGADLSDLAVEHSLCPSKENGGMLGWVRRGQMV-PEF 156

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKV 384
            ++ FS              FG+ +  V              +   +   ++  +   K+
Sbjct: 157 EEAAFSAPLNKVVR--CKTKFGWHLVQVL-----------SERDQCLLQDIQPEELHAKM 203

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
           ++     E  L      DE+  R  +    +  +   G 
Sbjct: 204 QDPSFIEEAQLIDVREPDEV-ERASLPGFKVLPLRQFGT 241


>gi|290959830|ref|YP_003491012.1| lipoprotein [Streptomyces scabiei 87.22]
 gi|260649356|emb|CBG72471.1| putative lipoprotein [Streptomyces scabiei 87.22]
          Length = 225

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 7/170 (4%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQ--KIGFVVNSERARSVGLDKKILDNLVSGATL 99
               VG+ ++  +   N   +                   A+S  L +  L+ +V    L
Sbjct: 33  AAAVVGQDRITVAQLENRVNEVRTAQRAVSTDDSQYQQAVAQSSALTRNTLNGMVLEKVL 92

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           DQ ++D G+      V    A            + +   + L R  +   +  +     +
Sbjct: 93  DQALKDAGVTVTRKEVQKYRADLEA--QAGGAEALET--AYLQRYSVAPGQLEESLRSDV 148

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
               +       +          K     ++ +D + LN R+     DPS
Sbjct: 149 EVQKLSAALGADLNTPEGGAVFWKALSKASKELD-VDLNPRYGSWGVDPS 197


>gi|322391823|ref|ZP_08065288.1| peptidyl-prolyl cis-trans isomerase [Streptococcus peroris ATCC
           700780]
 gi|321145303|gb|EFX40699.1| peptidyl-prolyl cis-trans isomerase [Streptococcus peroris ATCC
           700780]
          Length = 313

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 15/170 (8%)

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
              E ++       + E   K    ++     Y+K  ++Y +PE+ T + +   ++ +A 
Sbjct: 103 MTAESRKAQIRTSKLVEYAVKKAAESELTDENYKKAYDEY-TPEV-TAQIIKLDSEDKAK 160

Query: 285 EAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD----SIFSLAKKGDFT 339
           E     K+ G  F QLA++        + G           L D    + F+L   G  +
Sbjct: 161 EVLAKAKESGADFAQLAKDNSTDEKTKANGGEITFDSASTELPDVVKKAAFALDVNG-VS 219

Query: 340 PVIHGSF------GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
            VI           + I  ++      + + ++ K+ +   +   K ++ 
Sbjct: 220 DVITAPGTQAYSSSFYIVKLTKKTE-KSSNIEDYKEKLKTVILTQKQNDA 268


>gi|291518337|emb|CBK73558.1| hypothetical protein CIY_06460 [Butyrivibrio fibrisolvens 16/4]
          Length = 376

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 70/170 (41%), Gaps = 12/170 (7%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDE--LQAE-YEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
           EY+    ++ D  +KE   +I+ D+  +++  Y   K    + E     +L      +  
Sbjct: 152 EYRTYYNLVGDAAKKEADKDITEDDCWMRSFTYVLFKTTGNTDEDGKTVELTDEEITDLK 211

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDIS-LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
              ++L   + F    E QG + S  S L   +++   D+S+ ++  +L K+G+ + VI 
Sbjct: 212 ANAKALSVAEDFDAEVEAQGLTTSTYSYLKGETEDSTMDISIIEAAEAL-KEGEVSSVIE 270

Query: 344 -GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
               GY +  +     +      E   +    ++  K +E V    + +E
Sbjct: 271 VTDAGYYVIRLDKDHDT------EASDNKRTSLQTEKFNELVSSWKEEIE 314


>gi|315931795|gb|EFV10750.1| Peptidylprolyl isomerase [Campylobacter jejuni subsp. jejuni 327]
          Length = 80

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 30/68 (44%)

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              D+ F+L      T  +  +FGY +    N +    + F EVK+ I N ++  +  + 
Sbjct: 4   PFTDAAFALKNGTITTTPVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKV 63

Query: 384 VKEDYKRL 391
           + +  + L
Sbjct: 64  INQKGQDL 71


>gi|315928902|gb|EFV08160.1| surA N-terminal domain protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 186

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 74/233 (31%), Gaps = 59/233 (25%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
           + + F  +  +    + + ++  V V ++ +       +                     
Sbjct: 4   ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTM-------------------- 41

Query: 81  RSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
           +++ +D+ K L  L++       ++ +G+  +   +   I +        NK + + F +
Sbjct: 42  KALKIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKM----LAQNKTTLNAFKA 97

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
            L  +  + +++  ++ K L +  +                                   
Sbjct: 98  NLKSKNQSYEQFRTNFKKDLEKRKLYEKIAS----------------------------- 128

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
               A  D S+    ++FE+ KD +        +  L +  +  + I+ +  +
Sbjct: 129 ---MAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKKQ 178


>gi|226500554|ref|NP_001150505.1| peptidyl-prolyl cis-trans isomerase 1 [Zea mays]
 gi|195639680|gb|ACG39308.1| peptidyl-prolyl cis-trans isomerase 1 [Zea mays]
          Length = 124

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQLAE---EQGKSLSDI 310
           + K  +  P+ R    +    + +A      L+         F  LA    +   +    
Sbjct: 25  RRKASWKDPDGR---IISATTRGDAAARLLDLRNQILSGQANFADLAARHSDCSSARRGG 81

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            LG+F +  +      D+ ++L K G+ + ++    G  I 
Sbjct: 82  DLGTFGRRQMQKP-FEDATYAL-KVGELSDIVDTDSGVHII 120


>gi|317133521|ref|YP_004092835.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ethanoligenens
           harbinense YUAN-3]
 gi|315471500|gb|ADU28104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ethanoligenens
           harbinense YUAN-3]
          Length = 338

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 33/152 (21%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------DEAFQSLKKGKKFI 297
              +S+ +L+  Y KN           ++Q+ F  Q ++       D+  +  K    F 
Sbjct: 168 SEAVSDADLKDYYTKN--------FVQIKQIFFSTQDDSGNALSTTDQQAKKKKADNIFG 219

Query: 298 QLAEEQGK-----SLSDISLG--------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q+  ++         ++   G         F K         D+ FS+ K GD   +I  
Sbjct: 220 QINADRSNFTALMDANNEDPGMQSSPDGYVFGKSEDFVQVFKDTAFSM-KVGDV-KLIQS 277

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           S GY I +   + P+    F  VK D+   M+
Sbjct: 278 SLGYHILYKVALDPNK---FDSVKSDVLTDMK 306


>gi|257866945|ref|ZP_05646598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           casseliflavus EC30]
 gi|257873278|ref|ZP_05652931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           casseliflavus EC10]
 gi|257877021|ref|ZP_05656674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           casseliflavus EC20]
 gi|257801001|gb|EEV29931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           casseliflavus EC30]
 gi|257807442|gb|EEV36264.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           casseliflavus EC10]
 gi|257811187|gb|EEV40007.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           casseliflavus EC20]
          Length = 344

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/322 (11%), Positives = 93/322 (28%), Gaps = 36/322 (11%)

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
            ++  M  G +   +           +      IVL   +     D +  ++ + F    
Sbjct: 26  EEIATMKGGKITVQDFYDKAKTSSENQQALRQMIVLKVFNEKYGDDVTEEMIDEQFNNVA 85

Query: 222 DNYRAPE----------------YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
           + Y   +                   +   L      +  ++I+++E++  ++       
Sbjct: 86  EQYGGSDSFESTLTASGYTVKSYRAELKEQLALREGLKANMDITDEEMKTAWDSFHP--- 142

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLSDISLGSFSK----EYI 320
                  + +   ++ +A +  +  KK    F ++A+E+    +    G   K       
Sbjct: 143 ---EVEAQIIKVASEDDAKDVLEEAKKDDADFGEIAKEKSTDAATKEDGGTIKFDSTSTA 199

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFG------YVIAHVSNIKPSFTVSFQEVKKDIANQ 374
               +  + F L K G+ + VI  +        Y I  +   +        + K ++   
Sbjct: 200 VPNEVKTAAFDL-KDGEISEVISATNTSTYTTEYYIVKMVKNQDKGN-DMDKYKDELTEI 257

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS-IDLPLVDFAGKDVKGKEVAAI 433
            + T  ++         +E  A    M +    + +   I     + +  D    +    
Sbjct: 258 AQNTLLNDSTFMAATIGQELQAANVKMKDSDLADLLSDYITAAETEDSTADSSATDATDS 317

Query: 434 PYKEQLLFRVFGKDDPLSKDHT 455
              +             S+  T
Sbjct: 318 SAADSSATEATDDSTATSESAT 339


>gi|296116659|ref|ZP_06835269.1| peptidyl-prolyl cis-trans isomerase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976871|gb|EFG83639.1| peptidyl-prolyl cis-trans isomerase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 461

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 96/321 (29%), Gaps = 80/321 (24%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S V  V    +             G +   +   ++  +   V L  +I+  L+     
Sbjct: 64  DSIVAIVNGSVLTKRDVDT-----RGRLFA-LSSGLDVSKDVMVRLRPQIVRQLIDERLR 117

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM- 158
            + + +  +     ++   I+                      R G+ E    +   +  
Sbjct: 118 MEAMLERHINVPVAQIAAAISGIE------------------QRNGMPENSLRNRLAQDS 159

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +S T ++      +  S     Q  R    +R              I   ++A L +  E
Sbjct: 160 ISLTTLIDQIRVQVGWS-----QVLRMETGSRGRITAT-------EIQQRTDA-LKR--E 204

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
             K  Y   E   I   + D H  E +++ +                             
Sbjct: 205 DGKPQYMISE---IFVPVEDPHHPETELKFTE---------------------------- 233

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG--SFSKEYIPDVSLADSIFSLAKKG 336
                    Q L++G  F  +A +  +S S +  G   +++E   D  + +    +   G
Sbjct: 234 ------TIIQELREGAPFPIVAAQFSQSQSALEGGLLGWTQEDSLDPEVVEVARKMP-DG 286

Query: 337 DFTPVIHGSFGYVIAHVSNIK 357
             +  I  + GYVIA V+N +
Sbjct: 287 AISNPIRVAGGYVIATVNNRR 307


>gi|294500655|ref|YP_003564355.1| lipoprotein [Bacillus megaterium QM B1551]
 gi|294350592|gb|ADE70921.1| lipoprotein, putative [Bacillus megaterium QM B1551]
          Length = 300

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 96/268 (35%), Gaps = 33/268 (12%)

Query: 128 KDNKFSHDVFVSRLAREG-INEKEYIDH--YTKMLSRTDVVGMFVGG-MRPSNLLLDQAK 183
           +  K +   F   LA EG +N    ++   Y K L R  V+   +   ++ S+ +  Q +
Sbjct: 49  EGGKVTGAEFNRFLAVEGFLNPDAPLNDTSYRKELLRQLVMQKILISHLKTSDKVQKQVE 108

Query: 184 RFYFE-NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
             + +  RS D       +       S+        +  + ++  EY R           
Sbjct: 109 DMWKQIKRSYDEDTRKQGYEVLNIRSSDVT-----NQLTNQFKLEEYFRK---------- 153

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
               +I++DEL A Y++ +         +  QL F    +A  A   L+KG     + ++
Sbjct: 154 ----QITSDELTAYYKRIENDLT---RVSFTQLAFSTLHDAAAAAAELQKGTSLQDVQKK 206

Query: 303 QG--KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
               +++S I      K      S  D +      G+ +  I     Y I  +       
Sbjct: 207 YADVQTVSKIENADNLKLSSLSPSFID-VLKKQHIGESSEPIKMGKVYYILILKQKDKKT 265

Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDY 388
                EVK+++  ++ +   +  +++  
Sbjct: 266 E---SEVKEEMMKELVLNHINRYIQDQL 290


>gi|322376480|ref|ZP_08050973.1| foldase protein PrsA [Streptococcus sp. M334]
 gi|321282287|gb|EFX59294.1| foldase protein PrsA [Streptococcus sp. M334]
          Length = 312

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 19/188 (10%)

Query: 211 AVLTQWFEKYK----DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
               Q+ E Y+          E ++       + E   K     +     Y+K  ++Y  
Sbjct: 85  EEEKQYGENYQRVLSQAGMTLETRKAQIRTSKLVELAVKKAAEAELTDDAYKKAFDEYTP 144

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKS----LSDISLGSFSKEYIP 321
               T + +   N+ +A E  +  K  G  F QLA++         +   +   S     
Sbjct: 145 D--VTAQIIRLDNEDKAKEILEKAKASGADFAQLAKDNSTDEKTKANGGEITFDSASTEV 202

Query: 322 DVSLADSIFSLAKKGDFTPVIH------GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              +  + F+L   G  + VI        S  Y I  +       + +  + K+ +   +
Sbjct: 203 PEQVKKAAFALDVNG-VSDVIKATGTQAYSSQYYIVKLIKKTE-KSSNIDDYKEKLKTVI 260

Query: 376 RITKASEK 383
              K ++ 
Sbjct: 261 LTQKQNDA 268


>gi|310801080|gb|EFQ35973.1| ppic-type ppiase domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 181

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEA----FQSLKKGKK-FIQLA---EEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  +++EA E      + +K G+    +LA    +   +     LG F K  +      D
Sbjct: 93  ITRSKEEALEIIKAHEEKIKSGQTTLGELALTESDCSSARKRGDLGYFGKGDM-QKEFED 151

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F L   G+ + ++  + G  +  
Sbjct: 152 AAFGL-NPGEISTIVETASGLHLIE 175


>gi|56754325|gb|AAW25350.1| SJCHGC06702 protein [Schistosoma japonicum]
          Length = 153

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAFQSLKK----GK-KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  ++ EA    +  KK    G+  F +LA    +   + S   L  FS+  +      +
Sbjct: 68  ITRSKDEALTLIKKYKKQIETGECTFEELARTESDCSSAHSGGDLDFFSRGQMQKP-FEE 126

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F L K G+    ++   G  +  
Sbjct: 127 AAFKL-KIGEMCGPVYTDSGIHLIK 150


>gi|294888970|ref|XP_002772646.1| peptidyl-prolyl cis-trans isomerase pin1, putative [Perkinsus
           marinus ATCC 50983]
 gi|239877056|gb|EER04462.1| peptidyl-prolyl cis-trans isomerase pin1, putative [Perkinsus
           marinus ATCC 50983]
          Length = 129

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 269 IRTVEQLVFPNQKEADEAFQ---SLKKGKK-FIQLAEEQ---GKSLSDISLGSFSKEYIP 321
            RT   +   + +   E       LK  K  F ++A  +   G   +   LG F +  + 
Sbjct: 23  RRTCHDISISHDEALKEIKDMIEKLKADKSLFPEMAMARSDCGSYKNGGDLGYFDRGEM- 81

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFG 347
                ++ F+L + G+ +  +    G
Sbjct: 82  QRPFEEAAFNL-EVGELSGPVETESG 106


>gi|118784241|ref|XP_313593.3| AGAP004321-PA [Anopheles gambiae str. PEST]
 gi|116128413|gb|EAA09299.3| AGAP004321-PA [Anopheles gambiae str. PEST]
          Length = 167

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQSLKK-----GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +  +++EA E  +S +K          +LA+       +     LG F +  +      D
Sbjct: 82  ITRSKEEALEILESYRKKIQSNEATLQELAQRYSDCSSAKRGGDLGMFKRG-MMQKPFED 140

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F+L K GD + ++    G  + 
Sbjct: 141 AAFAL-KVGDMSDIVDTDSGVHLI 163


>gi|3004661|gb|AAC28408.1| dodo [Drosophila melanogaster]
          Length = 166

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 50/169 (29%), Gaps = 33/169 (19%)

Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
           P    L   +EK     R      +SY L    ++ +  + +    +     +     +P
Sbjct: 2   PDAEQLPDGWEK-----RTSRSTGMSYYLNMYTKESQWDQPTEP-AKKTGGGSAGGGDAP 55

Query: 268 EIRTVEQLVFP-----------------NQKEADEAFQ-----SLKKGKKFIQLAEEQG- 304
           +      L+                    ++EA    +      +++   F +LA     
Sbjct: 56  DEVHCLHLLVKHKGSRRPSSWREANITRTKEEAQLLLEVYRNKIVQQEATFDELARSYSD 115

Query: 305 --KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
              +     LG F +  +   +  D+ F L      + ++    G  I 
Sbjct: 116 CSSAKRGGDLGKFGRGQM-QAAFEDAAFKL-NVNQLSGIVDSDSGLHII 162


>gi|328947374|ref|YP_004364711.1| basic membrane protein [Treponema succinifaciens DSM 2489]
 gi|328447698|gb|AEB13414.1| basic membrane protein [Treponema succinifaciens DSM 2489]
          Length = 359

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 72/250 (28%), Gaps = 31/250 (12%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGR-QKVPFSSFINSWKQELGMISQKIGF 73
           K  + +L        L     S      VV + + + +         K     I ++ G 
Sbjct: 3   KFSIGLLIF---FAALGAFAQSDLQPLAVVKLNKSETITVKQL----KTRANFIQKQYGM 55

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                    +   + +L+NL++   + Q     GL     +V      +           
Sbjct: 56  ESLP-----IEQKQALLENLIAEKLITQAAAKEGLSVTDSQVDDAFLNT----------- 99

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
              F  +L    ++E +  D   K   ++ +          S            +     
Sbjct: 100 ---FSQQLG-TRVSEAQLEDLIKKQTGKS-LDDYIKEYSGMSKSEYKAY--LKNQLIIQQ 152

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
           YI    +        ++  +   +E  K  +   +  ++  ++      +        +L
Sbjct: 153 YIFSKKQSEIQAVAATDEEIRNAYEMNKSTFVWNDMMKLFLVMVPKGSNDMAARALATDL 212

Query: 254 QAEYEKNKEK 263
           + +Y+ + +K
Sbjct: 213 RNKYKGDSKK 222


>gi|149925231|ref|ZP_01913520.1| hypothetical protein PPSIR1_08501 [Plesiocystis pacifica SIR-1]
 gi|149813899|gb|EDM73556.1| hypothetical protein PPSIR1_08501 [Plesiocystis pacifica SIR-1]
          Length = 284

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 9/171 (5%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---QKEADE 285
            + +  + F + E+E   E S++ L      + +++       +  +       Q+EA E
Sbjct: 104 RRLLQKMQFVLEEEEAVAEPSDERLAEWIAAHADRFEQAPRVALTHVFLAAPARQREAPE 163

Query: 286 AF-----QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
           A      Q+L +G     L E         +  +            D++ +L   G +  
Sbjct: 164 AELTRLEQALAEGADPSTLGEAFVLGQELEAKSAVDLNRQFGQKFGDAVLALEDDGRWHR 223

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           +    +G+ + HV    P       EV+      +          E   RL
Sbjct: 224 L-RSLYGWHLVHVDERFPGRLAGVDEVRSQAREGVMAEARERARVEALDRL 273


>gi|289809592|ref|ZP_06540221.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 72

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 289 SLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            LK    F +LA++     S      LG F +  +   +    +FS     + T  +H  
Sbjct: 3   KLKTDGDFEKLAKKHSICPSGKKGGHLGEFRQGQMV-PAFDKVVFSCPVL-EPTGPLHTQ 60

Query: 346 FGYVIAHVSNIK 357
           FGY I  V   K
Sbjct: 61  FGYHIIKVLYRK 72


>gi|2739197|gb|AAC49984.1| peptidyl-prolyl cis/trans isomerase [Emericella nidulans]
 gi|259479663|tpe|CBF70093.1| TPA: Peptidyl-prolyl cis/trans isomerase
           [Source:UniProtKB/TrEMBL;Acc:O42735] [Aspergillus
           nidulans FGSC A4]
          Length = 176

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 12/91 (13%)

Query: 270 RTVEQLVFPNQKEADEAF----QSLKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIP 321
           R  E  +   ++EA E      + + +G+           +   +     LG F +  + 
Sbjct: 87  REAE--ITRTKEEAREILRGHQERIMRGEIRLGDLAMSESDCSSARKKGDLGFFGRGEM- 143

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                ++ F+L + G  + ++    G  +  
Sbjct: 144 QKEFEEAAFAL-QPGQVSDIVESGSGLHLIE 173


>gi|116788796|gb|ABK25005.1| unknown [Picea sitchensis]
 gi|116790870|gb|ABK25769.1| unknown [Picea sitchensis]
          Length = 123

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 13/116 (11%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQ 298
           +K+  S+  ++ E  +    +  P+ R    +    +  A     +L++       KF  
Sbjct: 9   QKVRASHLLIKHEGSRRPSSWQDPDGRR---IKATTRDAAVAQLSALREEIVSGRAKFED 65

Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           LA        +     LG F +  +      D+ + L K G+ + ++    G  I 
Sbjct: 66  LAARYSDCKSAKKGGDLGPFGRGQMQKP-FEDATY-LLKVGEISDIVDTESGVHII 119


>gi|119491393|ref|ZP_01623412.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lyngbya sp. PCC
           8106]
 gi|119453388|gb|EAW34551.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lyngbya sp. PCC
           8106]
          Length = 253

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 88/224 (39%), Gaps = 22/224 (9%)

Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA-PEYKR 231
              +  L   +     + SV+  V+N R    ++DP      +W E+ + +Y +  +   
Sbjct: 39  YVLDKELAAQENLNINSASVEQAVINFRLERNLSDP--QAFQEWLERNQMSYDSFHQQVE 96

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
             +    +     K+ I   +L+A +++ K    +     + ++V  + + A+   + L+
Sbjct: 97  AGFKRETL-----KLSIVQPQLEAYFQERKSFLDT---IILSRIVVADYELAETLHRRLQ 148

Query: 292 KGKK-FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
           + +  F QLA E   +     +  +G+ S   +P+      I ++A  G     +     
Sbjct: 149 EEEARFEQLAREYSLTPERNVNGMMGAVSLGSLPENL--KPIMTVATLGQIVGPVEIEGR 206

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           + I  V  +  +   SF++    +  +++       + E  K L
Sbjct: 207 WCIFRVEQLIEA---SFED--PKLKQKLQNELFERWINEKLKSL 245


>gi|304320041|ref|YP_003853684.1| peptidyl-prolyl cis-trans isomerase family protein [Parvularcula
           bermudensis HTCC2503]
 gi|303298944|gb|ADM08543.1| peptidyl-prolyl cis-trans isomerase family protein [Parvularcula
           bermudensis HTCC2503]
          Length = 421

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 12/182 (6%)

Query: 18  LVVLFVPFLIWGLSDALFSVS-GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
           L +L+V  ++ GL+  L +   G      V    +    F    + +L ++++ +  +  
Sbjct: 4   LAILWVTLILTGLTAPLANAQVGERVAAVVNDDPIST--FDVRQRIQLIIVTEGMRNLPQ 61

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
              A    L  + L  L+      Q  E   L      +  E+ +     G+       +
Sbjct: 62  EALA---QLQGRALRELIEERLKLQEAERFELTIPDEAIDAELEQ---LAGQAGTTVQQL 115

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPSNLLLDQAKRFYFENRSVDY 194
               LA  G+N     D      +   +V    G       + +           RS  Y
Sbjct: 116 -TEDLATAGVNIGTLRDRIQAEQAWQQLVRGRYGPRVSITDDAVETMLDDLELSARSDQY 174

Query: 195 IV 196
           ++
Sbjct: 175 LI 176


>gi|313683491|ref|YP_004061229.1| hypothetical protein Sulku_2369 [Sulfuricurvum kujiense DSM 16994]
 gi|313156351|gb|ADR35029.1| hypothetical protein Sulku_2369 [Sulfuricurvum kujiense DSM 16994]
          Length = 277

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/375 (11%), Positives = 103/375 (27%), Gaps = 115/375 (30%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           ++ +  L+   +  L+S       V V    +         KQ     +Q          
Sbjct: 3   LITLSTLL---AAYLWSAPIGGVAVLVKNTPITLFEIQEEMKQSGTSANQSA-------- 51

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                      D L+         ++  +      +  E+ R        NK S + F++
Sbjct: 52  -----------DTLIRKKLEQLEAQEKKITVSSAEINEELNRM----AVQNKLSMEQFLN 96

Query: 140 RLAR-EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
            +    G++EK+      + +    +                                  
Sbjct: 97  AMQTVRGLSEKDLRARVEESIKGQKLYSSI------------------------------ 126

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI-SYILFDVHEKEKKIEISNDELQAEY 257
                 +  P+     ++++ + D +  PE   + +Y+         KI           
Sbjct: 127 --AFSKMGQPTAEEENEYYQLHMDEFSRPESFEVTTYVSSSQEALTAKIADP-------- 176

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
                         +  +   + K+    +  +       QLA+                
Sbjct: 177 --------------MRHIESISSKDETIPYAKIN-----PQLAQ---------------- 201

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIH-GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
                      + +    G F+PV+  G  G++  ++ +     T +   V+  IAN + 
Sbjct: 202 -----------LLNKIPNGSFSPVLPNGKNGFMSFYMRDKLNVVTENLDTVRPQIANAIL 250

Query: 377 ITKASEKVKEDYKRL 391
             K ++ + + + RL
Sbjct: 251 GEKRNQVLNDYFTRL 265


>gi|149916816|ref|ZP_01905318.1| hypothetical protein PPSIR1_05628 [Plesiocystis pacifica SIR-1]
 gi|149822533|gb|EDM81922.1| hypothetical protein PPSIR1_05628 [Plesiocystis pacifica SIR-1]
          Length = 269

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 8/170 (4%)

Query: 235 ILFDVHEKEKKIEISNDELQAEYE-KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
            + +      ++    + L+A YE +  EK+F PE R +E + FP  +EA+ A   LK G
Sbjct: 102 AMLERRLPRAEVAADTEALRARYERERDEKFFEPERRRIEAVYFPTFEEAEGALARLKSG 161

Query: 294 K-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF--SLAKKGDFTPVIHGSFGYVI 350
           +     +A EQG+ +  +S  +  ++        + +F   L         +      ++
Sbjct: 162 EVDIAGVAAEQGRDV--LSSPAMKRDDDEFPRYHEVLFDPELKVGEPLREPVLSDKLVLV 219

Query: 351 AHVSNIKPSFTVSFQ--EVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
           A ++ I P   V F   EV++ + +  R  +      E    L      G
Sbjct: 220 AVLAEIVPRSHVPFDTPEVQEQLVSAERAARLEPVEAELLDELRAQYPAG 269


>gi|260654850|ref|ZP_05860338.1| putative fibrous sheath CABYR-binding protein [Jonquetella anthropi
           E3_33 E1]
 gi|260630565|gb|EEX48759.1| putative fibrous sheath CABYR-binding protein [Jonquetella anthropi
           E3_33 E1]
          Length = 570

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 62/187 (33%), Gaps = 13/187 (6%)

Query: 2   LEIIRKASRTWVA--KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
           L  +R   +  +    +   +        G  D          V S+  ++   S    +
Sbjct: 9   LTSLRTQIKWILVAFLVAFGLSIPLMYGVGRHDEKNKGVRDHVVASIDGREYKLSELHKA 68

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
            +      +++    +  E      + ++ LD+L +   LD+ I++ G+E    +V  ++
Sbjct: 69  MQ----GFAERNNIKLTQENL--PAVYQQTLDSLATQIALDKAIKERGIEPTEAQVNEQL 122

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
                   +    + + F++ L   G + ++   +    L+   ++          +  +
Sbjct: 123 K-----QLEVQYVTKEAFLANLRATGSSLEQVKANLAHDLAVRQLLTQESESATVDDQQV 177

Query: 180 DQAKRFY 186
                 +
Sbjct: 178 KSLYDLF 184


>gi|21221540|ref|NP_627319.1| lipoprotein [Streptomyces coelicolor A3(2)]
 gi|256787270|ref|ZP_05525701.1| lipoprotein [Streptomyces lividans TK24]
 gi|289771165|ref|ZP_06530543.1| lipoprotein [Streptomyces lividans TK24]
 gi|10241784|emb|CAC09542.1| putative lipoprotein [Streptomyces coelicolor A3(2)]
 gi|289701364|gb|EFD68793.1| lipoprotein [Streptomyces lividans TK24]
          Length = 215

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 35/138 (25%), Gaps = 6/138 (4%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVGLDKKILDNLVSGATL 99
               VG Q++  +   N   +        +      ++  AR+  L +  L  +V    L
Sbjct: 33  AAAVVGDQRITVAQLENRVDEVREAQRAAVPDDTQYQQVVARTGTLTRDTLHGMVLDRVL 92

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            +  +D G+      V                   +     L + G+      D+    +
Sbjct: 93  HRAAQDAGVTVSRKEVQDMRGELE--KQAGGPEQLET--VWLQQYGVAPDRLDDNLLVQI 148

Query: 160 SRTDVVGMFVGGMRPSNL 177
               +             
Sbjct: 149 EAQKLAQSLGTDTSRPEF 166


>gi|322488477|emb|CBZ23723.1| peptidyl-prolyl cis-trans isomerase/rotamase,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 115

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 288 QSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           QS+++GK  F + A ++    S      LG F    +   S  D+  SL + G  + ++ 
Sbjct: 46  QSIEEGKMTFEEAARQRSDCSSYARGGDLGVFGPGEMMK-SFEDATKSL-EVGQVSGIVV 103

Query: 344 GSFGYVIAH 352
              G  I  
Sbjct: 104 TDSGIHIIK 112


>gi|119192926|ref|XP_001247069.1| hypothetical protein CIMG_00840 [Coccidioides immitis RS]
 gi|303312467|ref|XP_003066245.1| peptidyl-prolyl cis-trans isomerase ssp-1, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240105907|gb|EER24100.1| peptidyl-prolyl cis-trans isomerase ssp-1, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320033674|gb|EFW15621.1| peptidyl-prolyl cis-trans isomerase [Coccidioides posadasii str.
           Silveira]
          Length = 177

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 31/113 (27%), Gaps = 27/113 (23%)

Query: 265 FSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK----KFIQL 299
                     L+                   +++EA E      Q +  G+         
Sbjct: 64  QKEGQIRASHLLIKHRDSRRPTSWREANITRSKEEAIEILNGHLQRIMSGEATLGNIAMT 123

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +   +     LG F +  +      D+ F+L K G  + ++    G  +  
Sbjct: 124 ESDCSSARKKGDLGFFGRG-VMQKEFEDASFAL-KPGQISGIVETQSGVHLIE 174


>gi|189206624|ref|XP_001939646.1| peptidyl-prolyl cis-trans isomerase ssp1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187975739|gb|EDU42365.1| peptidyl-prolyl cis-trans isomerase ssp1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 194

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 291 KKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
              K   +LA    +   +     LG F +  +       + F+L +KG  + ++  + G
Sbjct: 129 DNAKSLSELATTESDCSSARKGGDLGFFGRGDM-QKEFEQAAFAL-EKGQVSDMVETASG 186

Query: 348 YVIAH 352
             +  
Sbjct: 187 VHLIQ 191


>gi|323341667|ref|ZP_08081900.1| hypothetical protein HMPREF0357_10080 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464092|gb|EFY09285.1| hypothetical protein HMPREF0357_10080 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 322

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 21/132 (15%)

Query: 251 DELQAEYEKNKEKYFSPEI-RTVEQLVFPNQ----------KEADEAFQSLKKGKKFIQL 299
           D L+A Y++  + +   +  R V  ++               + ++   +LK+GK F  +
Sbjct: 147 DYLEANYDQYAKAFVEEKQPRVVSHILVKMDDSKNPTAEETAKMEKIDAALKEGKAFSDV 206

Query: 300 AEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
           A E    G + +   LG   K         +   S+ KKG+ T  +   +G     V   
Sbjct: 207 AMEFSDDGTAQNGGLLGYMDKTSSLVPEFIEGATSI-KKGETTGWVTSQYGRHRITV--- 262

Query: 357 KPSFTVSFQEVK 368
                 SF+E+K
Sbjct: 263 ---QQDSFEEIK 271


>gi|197124443|ref|YP_002136394.1| DSBA oxidoreductase [Anaeromyxobacter sp. K]
 gi|196174292|gb|ACG75265.1| DSBA oxidoreductase [Anaeromyxobacter sp. K]
          Length = 348

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V  VG Q +         K +L  + Q+          +   L ++ L++++     
Sbjct: 32  SAPVAKVGGQAITTGELDELVKSDLKQLEQQY-------EEQKYQLKRQGLESMIRRRVF 84

Query: 100 DQFIEDIGLEADHGRVWGEIARSPL 124
           +   +  G+  D       +A+ P 
Sbjct: 85  EAKAKAEGITPDELVNRDVVAKIPE 109


>gi|186472670|ref|YP_001860012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
 gi|184195002|gb|ACC72966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
          Length = 250

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 78/272 (28%), Gaps = 36/272 (13%)

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
              D       F+  L   G  E          L+   V      G+  S   + +    
Sbjct: 6   RIDDEVVDVGEFIRLLKLTGQFESLIEQMVRDKLA---VHAAKKHGVTVSADEIQERADQ 62

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
           +   R +     +          S      +                        +   +
Sbjct: 63  FRRVRGLHRAA-DMNQYLDTLKISLDDFEAFITDG----------------LFQEKMLDQ 105

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQG 304
           +  S+ E++  +  N  K+ + E   V  ++  ++ +A E    L++    F ++A E  
Sbjct: 106 VG-SDSEIEEYFSMNSPKFDALE---VSHILLDDEGKAKEMISYLREDPDAFAEMAREHS 161

Query: 305 KSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSF 360
            + +  S G   K         +   IF+    GD            + I  V+   P+ 
Sbjct: 162 IADTKDSGGVIGKVLRGSLKPDIEAKIFNAG-VGDLLGPFASPDRSCFEIFAVTAKYPAQ 220

Query: 361 TVSFQEVKKDIANQMRIT----KASEKVKEDY 388
                +V  +I   +R      +A E + E  
Sbjct: 221 LD--ADVASEIKRLLREQWLMARAQEHIIEAL 250


>gi|32490767|ref|NP_871021.1| hypothetical protein WGLp018 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165973|dbj|BAC24164.1| surA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 452

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 62/391 (15%), Positives = 131/391 (33%), Gaps = 52/391 (13%)

Query: 10  RTWVAKIFLV--VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
           +  V K  L+  + F+ F ++   +  +S      +  V ++ +  S        +    
Sbjct: 27  KNLVLKHILLFKIFFISFCLFFNVNKSYSKEIDKIISIVNKKVILKSDVERIISDKNFNF 86

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI---EDIGLEADHG----------R 114
                    SE  +++ L+K I+D ++     +       D+    +            +
Sbjct: 87  ENYFNSE--SESLKNLVLNKLIIDEVIKNKLNEYETFFSSDLLFNVNQNIFLEKYINLNK 144

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
              EI    +   + N F   ++ + +  E + +K YI         T +          
Sbjct: 145 KKKEITDKSILKLEPNNF---LYWN-IQYEKLKKKIYISEKEINYLSTILFLKNNNIKIN 200

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVP--AIADPSNAVLTQWFEKYK---DNY----- 224
            N  + +  + + +   ++Y  + N           S  ++ ++ +  K    N+     
Sbjct: 201 INHYILENPKIFSKKNIIEYKQIVNNLFKLLKNDKLSEKLIFKYLKNNKIVLGNFIGWNN 260

Query: 225 --RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK--EKYFSPEIRTVEQLVFPNQ 280
             + P+Y RI        +K   +   N  L     KN   +K    EI+    L+ P++
Sbjct: 261 LIKLPKYFRIFLFDLQKRKKIFGLFFLNKNLHLFQIKNIKYDKKIETEIKIKHILLIPSE 320

Query: 281 KEADEA----FQSLK-----KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
              +       + +K     K   F   A++  + L     G    +Y       +  F+
Sbjct: 321 NRDENNTYFYLKQIKNQISSKEISFSNAAKKYSEDLYSALQGG-EIDYDYKKIFDN--FT 377

Query: 332 LAK-----KGDFTPVIHGSFGYVIAHVSNIK 357
           L K     KG+ T  I    G+ +  + NIK
Sbjct: 378 LNKINKIKKGEITGPIRSLQGWHLVKLMNIK 408


>gi|302417108|ref|XP_003006385.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Verticillium albo-atrum
           VaMs.102]
 gi|261353987|gb|EEY16415.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Verticillium albo-atrum
           VaMs.102]
          Length = 177

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 287 FQSLKKGKK-FIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            + +K G+     LA    +   +     LG F +  +      ++ F+L K G+ + +I
Sbjct: 107 EEKIKSGQSSLGDLAVTESDCSSARKRGDLGYFGQGDM-QREFEEAAFAL-KVGEVSGII 164

Query: 343 HGSFGYVIAH 352
             + G  +  
Sbjct: 165 ETASGLHLIE 174


>gi|153864542|ref|ZP_01997413.1| secreted protein [Beggiatoa sp. SS]
 gi|152145964|gb|EDN72588.1| secreted protein [Beggiatoa sp. SS]
          Length = 110

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V    +  ++     ++E   ++Q+     N E   +V L+K++LD+++  A   Q 
Sbjct: 32  VAIVNDDVIVNTALQQQLRREHEKLAQQ-----NIELPPNVNLEKRVLDSMIMIALQLQL 86

Query: 103 IEDIGLEADHGRVWG 117
            E  G++ +   +  
Sbjct: 87  AEKTGIKVEDSHLKR 101


>gi|16800256|ref|NP_470524.1| hypothetical protein lin1187 [Listeria innocua Clip11262]
 gi|16413646|emb|CAC96418.1| lin1187 [Listeria innocua Clip11262]
          Length = 1136

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 105/352 (29%), Gaps = 36/352 (10%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK----EKYFSPEIRTVEQLVF 277
            ++  PEY   +      +    K   S+  ++ E + NK         PE R + ++  
Sbjct: 204 QDFDLPEY---TIASLTFNNLADKEAFSDAYIRTEKKDNKKVEQALAGQPEKR-LNKIKT 259

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGK-SLSDISLG-SFSKEYIPDVSLADSIFSLAKK 335
             QK+ D+A   + KGK   +L + Q K   +   L   FSK      S    I    K+
Sbjct: 260 SEQKKLDDATAEINKGK--AELQKNQAKLDAAKAQLDEGFSKYNAAKASYDAKI----KQ 313

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-ANQMRITKASEKVKEDYKRLEEF 394
           G+                 +   +        KK + A +M+I +  E + +  + LEE 
Sbjct: 314 GE-----------------SEIAAGEAELANAKKQLDAAKMQINQGEEAILQAERELEEG 356

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           LA     + +         +              ++       + L   F          
Sbjct: 357 LAAWNEANNLLNTANGYLKNARSTLENALKQ--PDLTDFDIDRESLTNAFNMAASELDIS 414

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
              L +       + +          ++   +    K V   E+    A  ++ E  ++ 
Sbjct: 415 AEELAEYEETINTLLDDYENGAISDAQIREALNAALKQVAEGEKAYQSARTVLDEEKQKI 474

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
           +       +    L       +        G + IS       +  +   +E
Sbjct: 475 EQGEKTLASKQQQLEQAKIAYQAGLAKYQAGQEKISLAKKQLADGKETGAVE 526


>gi|294084202|ref|YP_003550960.1| SurA domain-containing protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663775|gb|ADE38876.1| SurA domain protein [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 424

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 89/276 (32%), Gaps = 29/276 (10%)

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
                K   +  V          S   L Q +        +D      +   + ++  +A
Sbjct: 67  EKQIRKDALQMLVDDTLKMQAALSTNPLVQQQANRPATDLID------QSFASDSESGSA 120

Query: 212 VLTQW---FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            L +    ++  K  + A     + +  +   +        + ++  E E+ +     P+
Sbjct: 121 ALRRLNLNYDAVKTKFAA----DLIWSGYLQDKFADIFAEIDGKIDLELERIRADASQPQ 176

Query: 269 IRTVEQLVFP--------NQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSK 317
           +   E ++ P            A E  +++KKG  F  +A++    G +     LG    
Sbjct: 177 VNISEIVLAPEPNRPLAATMALATEMVKAVKKGADFNAIAQQYSAAGTAQQGGRLGWVLL 236

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
           E +P+     ++ +    G  +  I       I   +  +        + +  +   +  
Sbjct: 237 ERLPEK--LQAMIAPLDVGGVSDPIQLDGAVYIFKKTGDRKDGANDISQSRIWLVRAVLP 294

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
             A         RLE    LG  + +I+  + +V++
Sbjct: 295 VNAE---ATKSDRLEAAAQLGRDVTDINDCDSMVAL 327


>gi|255084659|ref|XP_002508904.1| predicted protein [Micromonas sp. RCC299]
 gi|226524181|gb|ACO70162.1| predicted protein [Micromonas sp. RCC299]
          Length = 116

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAF-QSLKKGK-KFIQLAEEQGKSLS---DISLG 313
           +    +  PE   + +       +  EA+ + ++ G   F  LA +     S      LG
Sbjct: 17  RRPASWRDPEGAVITKRSKAAALDELEAYREQIESGAVTFADLAAKVSDCSSAKHGGDLG 76

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            F    +   +  D  F+L + G+ + VI    G  I 
Sbjct: 77  FFGPGKM-QKAFEDGAFAL-QVGEMSGVIDSDSGVHII 112


>gi|150866261|ref|XP_001385798.2| Peptidyl-prolyl cis-trans isomerase [Scheffersomyces stipitis CBS
           6054]
 gi|149387517|gb|ABN67769.2| Peptidyl-prolyl cis-trans isomerase [Scheffersomyces stipitis CBS
           6054]
          Length = 177

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 44/136 (32%), Gaps = 34/136 (25%)

Query: 249 SNDELQAEYEK------NKEKYFSPEIRTVEQLVFPNQKEA---------------DEAF 287
           S+D   AEY K      NK          V  L+  N +                 DEA 
Sbjct: 41  SDDAKLAEYLKHFRANGNKPVVQDDGKVRVSHLLIKNVQSRKPRSWKSPDGITLSRDEAI 100

Query: 288 QSLKKGK--------KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336
             LKK +        K  +LAE +    S      LG F K  +      ++ + L   G
Sbjct: 101 SILKKHQARILNGEIKLSELAETESDCSSHSQGGDLGFFGKGQM-QPKFEEAAYGL-NVG 158

Query: 337 DFTPVIHGSFGYVIAH 352
           + + +I    G  I  
Sbjct: 159 EISDIIETDSGVHILQ 174


>gi|295706006|ref|YP_003599081.1| putative lipoprotein [Bacillus megaterium DSM 319]
 gi|294803665|gb|ADF40731.1| putative lipoprotein [Bacillus megaterium DSM 319]
          Length = 300

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 97/275 (35%), Gaps = 47/275 (17%)

Query: 128 KDNKFSHDVFVSRLAREG-INEKEYIDH--YTKMLSRTDVVGMFVGG-MRPSNLLLDQAK 183
           +  K +   F   LA EG +N    ++   Y K L R  V+   +   ++ S+ +  Q +
Sbjct: 49  EGGKVTGAEFNRFLAVEGFLNPDAPLNDTSYRKELLRQLVMQKILISHLKTSDKVQKQVE 108

Query: 184 RFYFE--------NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
             + +         R   Y VLN R        +            + ++  EY R    
Sbjct: 109 DMWKQIKRSYNEDTRKQGYEVLNIRSSDVTNQLT------------NQFKLEEYFRK--- 153

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                      +I++DEL A Y++ +         +  QL F    +A  A   L+KG  
Sbjct: 154 -----------QITSDELTAYYKRIENDLT---RVSFTQLAFSTLHDAAAAAAELQKGTS 199

Query: 296 FIQLAEEQG--KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
              + ++    +++S I      K      S  D +      G+ +  I     Y I  +
Sbjct: 200 LQDVQKKYADVQTVSKIENADNLKLSSLSPSFID-VLKKQHIGESSEPIKMGKVYYILIL 258

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
                       EVK+++  ++ +   +  ++++ 
Sbjct: 259 KQKDKKTE---SEVKEEMMKELVLNHINRYMQDEL 290


>gi|295115998|emb|CBL36845.1| hypothetical protein [butyrate-producing bacterium SM4/1]
          Length = 332

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 11/130 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
            + ++   +Q+ A+     + +G    + A  +G ++S+  LG   +          + F
Sbjct: 177 DITEVRAEDQETAERILAGISEGSSLEKAASAEGLTVSERKLGRAEESE----DFEYAAF 232

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            L + G  + V+  +  Y +    N         +E   +   Q+   +  +  ++ Y  
Sbjct: 233 GL-ETGQVSEVVEDNGQYCVIRCDNDYD------EEATAERKEQIYEARREKAFQDIYGS 285

Query: 391 LEEFLALGTS 400
            +E +AL  S
Sbjct: 286 FKEGIALKDS 295


>gi|328865110|gb|EGG13496.1| hypothetical protein DFA_11257 [Dictyostelium fasciculatum]
          Length = 374

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 295 KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           KF +LA +      +     LG F++  +   +  D+ F+L + G+ T ++    G  I 
Sbjct: 313 KFDELAHKYSDCSSAKRGGDLGFFTRGQM-QKAFEDASFAL-QVGEMTEIVSTDSGVHII 370

Query: 352 H 352
            
Sbjct: 371 E 371


>gi|313608785|gb|EFR84595.1| foldase protein PrsA [Listeria monocytogenes FSL F2-208]
          Length = 126

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 40/111 (36%), Gaps = 6/111 (5%)

Query: 302 EQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           E     +  + G     + P   D +   + ++L  K D + ++  ++GY +  +     
Sbjct: 1   EYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALENKDDVSGIVKSTYGYHLIQLVKKTE 60

Query: 359 SFTVSFQEV---KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
             T + ++       I +Q+     +  +K++ K     +      D  + 
Sbjct: 61  KGTYAKEKANVKAAYIESQLTTENMTAALKKELKAANIDIKDSDLKDAFAD 111


>gi|68491571|ref|XP_710415.1| hypothetical protein CaO19.12663 [Candida albicans SC5314]
 gi|68491594|ref|XP_710404.1| hypothetical protein CaO19.5196 [Candida albicans SC5314]
 gi|66361212|pdb|1YW5|A Chain A, Peptidyl-Prolyl Isomerase Ess1 From Candida Albicans
 gi|12655856|gb|AAK00626.1| peptidyl prolyl cis/trans isomerase [Candida albicans]
 gi|46431598|gb|EAK91142.1| hypothetical protein CaO19.5196 [Candida albicans SC5314]
 gi|46431610|gb|EAK91153.1| hypothetical protein CaO19.12663 [Candida albicans SC5314]
 gi|238879094|gb|EEQ42732.1| peptidyl-prolyl cis-trans isomerase 1 [Candida albicans WO-1]
          Length = 177

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 34/136 (25%)

Query: 249 SNDELQAEY------EKNKEKYFSPEIRTVEQLVFPNQKEA---------------DEAF 287
           ++ E+   Y         K          V  L+  N +                 DE+ 
Sbjct: 41  TDKEVLNAYIAKFKNNGYKPLVNEDGQVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESI 100

Query: 288 QSLKK-------GK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336
           Q LKK       G+ K  +LA  +    S      LG FSK  +      ++ F+L   G
Sbjct: 101 QILKKHLERILSGEVKLSELANTESDCSSHDRGGDLGFFSKGQM-QPPFEEAAFNLH-VG 158

Query: 337 DFTPVIHGSFGYVIAH 352
           + + +I  + G  I  
Sbjct: 159 EVSNIIETNSGVHILQ 174


>gi|239930810|ref|ZP_04687763.1| lipoprotein [Streptomyces ghanaensis ATCC 14672]
 gi|291439175|ref|ZP_06578565.1| lipoprotein [Streptomyces ghanaensis ATCC 14672]
 gi|291342070|gb|EFE69026.1| lipoprotein [Streptomyces ghanaensis ATCC 14672]
          Length = 215

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 37/138 (26%), Gaps = 6/138 (4%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATL 99
               VG Q++  S   +   +        +          AR+  L +  L  +V    L
Sbjct: 33  AAAVVGDQRITVSQLEDRVSEVRAAQRAAVPDEAQYAQAIARTGSLTRDTLHGMVLDRVL 92

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
                D G+         EI +      +    +  +  + L + G+  +   ++    L
Sbjct: 93  QHAARDAGVTVTP----REIQQMRSGLEEQAGGAEALEAAWLQQYGVPPQRLDENLRLQL 148

Query: 160 SRTDVVGMFVGGMRPSNL 177
               +             
Sbjct: 149 EAQKLAQRLGTETGRPEF 166


>gi|103486961|ref|YP_616522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingopyxis
           alaskensis RB2256]
 gi|98977038|gb|ABF53189.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingopyxis
           alaskensis RB2256]
          Length = 446

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 49/181 (27%), Gaps = 19/181 (10%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
            +V  + +  +            + +     V         L  ++  NL+      Q  
Sbjct: 57  ATVNGEIITATDIEQRM-----ALIRIANNNVELPPEEEQRLRNQVFSNLIDEKLQIQEA 111

Query: 104 EDIGLEADHGRVWGEIARSPL-FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
               +  D   V  + AR    F         + F + LA +G +            +  
Sbjct: 112 RAADITIDENVVNEQFARLAARFKQT-----PEQFAAYLASKGSSAAAVKQQIRGEFAWD 166

Query: 163 DVVG-MFVGGMRPSNLLLDQAKRFYFENRSVD-------YIVLNNRHVPAIADPSNAVLT 214
            ++          S   +D   +     +  D       Y+     ++ A+ + +  ++ 
Sbjct: 167 RLLSRNIQSTTNVSTEEVDLIVKQMEAAKGQDEFHLGEIYLSATPDNIAAVTENARKIIQ 226

Query: 215 Q 215
            
Sbjct: 227 A 227


>gi|302783100|ref|XP_002973323.1| hypothetical protein SELMODRAFT_232038 [Selaginella moellendorffii]
 gi|302789630|ref|XP_002976583.1| hypothetical protein SELMODRAFT_105619 [Selaginella moellendorffii]
 gi|300155621|gb|EFJ22252.1| hypothetical protein SELMODRAFT_105619 [Selaginella moellendorffii]
 gi|300159076|gb|EFJ25697.1| hypothetical protein SELMODRAFT_232038 [Selaginella moellendorffii]
          Length = 123

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
           EQ V   +   DE      K         +   +     LG F +  +   S  ++ +SL
Sbjct: 43  EQAVAKLEHIRDEILSGRAKFSDLATQLSDCSSAKRGGDLGWFGRGQM-QKSFEEATYSL 101

Query: 333 AKKGDFTPVIHGSFGYVIA 351
            K G+ + ++    G  I 
Sbjct: 102 -KVGELSGIVDSDSGAHII 119


>gi|218133261|ref|ZP_03462065.1| hypothetical protein BACPEC_01126 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992134|gb|EEC58138.1| hypothetical protein BACPEC_01126 [Bacteroides pectinophilus ATCC
           43243]
          Length = 421

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 20/169 (11%)

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAP---EYKRISYILFDV--HEKEKKIEISNDEL 253
           N  +   A    + +  +++K   +Y      E     Y+  +    + +K +  S+ E+
Sbjct: 201 NSSIEKAASDDGSSVKDYYKKTFGDYATQSSIESYVKQYLRANAYYDDYQKNLTFSDAEI 260

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF---------IQLAEEQG 304
              Y +NK+KY   + R +E     +  +A+E   S+  G  F           L     
Sbjct: 261 NDYYNENKDKYDVVDYRYLE---VADLDKANEMLASITDGSSFRALCPQYAADDLKSGYE 317

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIF-SLAKKGD--FTPVIHGSFGYVI 350
                ++ G+          +   +F S+ K+GD     V   +  YV+
Sbjct: 318 TDDKSLATGATQSSITTGAEVTSWLFDSVRKEGDKTVVTVADDNKNYVL 366



 Score = 37.3 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 16/106 (15%)

Query: 176 NLLLDQAKRFYFENRSVDYIVLNN--RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
               D A +   E+    Y+  N            S+A +  ++ + KD Y   +Y+ + 
Sbjct: 221 KTFGDYATQSSIESYVKQYLRANAYYDDYQKNLTFSDAEINDYYNENKDKYDVVDYRYLE 280

Query: 234 YILFDVHEKEKKIEISN-------------DELQAEYEKNKEKYFS 266
               D   +     I++             D+L++ YE + +   +
Sbjct: 281 VADLDKANEM-LASITDGSSFRALCPQYAADDLKSGYETDDKSLAT 325


>gi|255579823|ref|XP_002530749.1| 50S ribosomal protein L20, putative [Ricinus communis]
 gi|223529713|gb|EEF31655.1| 50S ribosomal protein L20, putative [Ricinus communis]
          Length = 224

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQS--LKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIP 321
           PE R ++     +     +AF+   +    KF  +A    +   +     LG FS+  + 
Sbjct: 133 PEGRVIQNTTRESAVSQLKAFREDIVSGKAKFEDIASRFSDCSSAKRGGDLGPFSRGQMQ 192

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
                D+ ++L K G+ + ++    G  I 
Sbjct: 193 KP-FEDATYAL-KVGEISEIVDTDSGVHII 220


>gi|86160366|ref|YP_467151.1| DsbA oxidoreductase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776877|gb|ABC83714.1| DsbA oxidoreductase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 349

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V  VG Q +         K +L  + Q+          +   L ++ L++++     
Sbjct: 32  SAPVAKVGGQAITAGELDELVKSDLKQLEQQY-------EEQKYQLKRQGLESMIRRRVF 84

Query: 100 DQFIEDIGLEADHGRVWGEIARSPL 124
           +   +  G+  D       +A+ P 
Sbjct: 85  EAKAKAEGITPDELVNRDVVAKIPE 109


>gi|282891870|ref|ZP_06300349.1| hypothetical protein pah_c200o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498130|gb|EFB40470.1| hypothetical protein pah_c200o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 354

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 106/364 (29%), Gaps = 85/364 (23%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
            +  + +   + +     +            +    V +           +L +L+    
Sbjct: 40  NNRVLATTNGKIITVMDVMKKMDIVFYRNFPEYASSVPARLQFYQTNWSDVLQDLIDKEL 99

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           +    E++ L   +G V  E+            F  D+  + L R G+   E  +     
Sbjct: 100 VMADAEEMKLPLTNGDVRQEMEEI---------FGPDIIHN-LDRAGLTYDEAWNSIKGD 149

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           +    ++                            Y  +N +   A A  +   +   +E
Sbjct: 150 IIIRRML----------------------------YYRVNTK---AQAQATPQAIQTAYE 178

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           +Y      P+      I     + EK  +I+N                     + Q +  
Sbjct: 179 QYAKENVRPKEWTYYMISVRDEQDEKGAKIAN--------------------QIYQQLQK 218

Query: 279 NQKEADEAFQSLKK--GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLA 333
              + +    +LKK  G    Q+                +K    +  ++D    I +  
Sbjct: 219 TPVKIETLQDNLKKWLGDNIAQV-------------NVSTKFSHMENEVSDENKQILATL 265

Query: 334 KKGDFTPVI------HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
             G+++  I        S  Y + ++ ++ P     F EVK +I + +     S++    
Sbjct: 266 SPGNYSKPIAQKSRATKSTVYRLFYLDSMNPGGAPPFDEVKDEIKSYLTDEAISKETASY 325

Query: 388 YKRL 391
            +RL
Sbjct: 326 LERL 329


>gi|224103965|ref|XP_002313264.1| predicted protein [Populus trichocarpa]
 gi|222849672|gb|EEE87219.1| predicted protein [Populus trichocarpa]
          Length = 296

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 17/134 (12%)

Query: 292 KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            G+    LA E     S      LG   K  +      ++ FS              FG+
Sbjct: 115 GGEDLSDLAVEYSLCPSKEEGGMLGWVRKGQMV-PEFEEAAFSAPLNKVVR--CKTKFGW 171

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
            +  V + +       + +  +I       K  +       +L +        DE+++  
Sbjct: 172 HLLQVISERE------ESLLGEIQADELHVKIQDPTFAKEAQLIDVRE----PDEVAKAS 221

Query: 409 KIVSIDLPLVDFAG 422
            +   ++  +   G
Sbjct: 222 -LPGFEVLPLRQFG 234


>gi|307704713|ref|ZP_07641612.1| foldase protein prsA [Streptococcus mitis SK597]
 gi|307621760|gb|EFO00798.1| foldase protein prsA [Streptococcus mitis SK597]
          Length = 312

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 19/187 (10%)

Query: 211 AVLTQWFEKYK----DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
               Q+ E Y+          E ++       + E   K     +     Y+K  ++Y  
Sbjct: 85  EEEKQYGENYQRVLSQAGMTLETRKAQIRTSKLVELAVKKAAEAELTDDAYKKAFDEYTP 144

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKS----LSDISLGSFSKEYIP 321
               T + +   N+ +A E  +  K  G  F QLA++         +   +   S     
Sbjct: 145 D--VTAQIIRLDNEDKAKEVLEKAKAEGADFAQLAKDNSTDEKTKANGGEITFDSASTEV 202

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFG------YVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              +  + F+L   G  + VI  +        Y I  +       + +  + K+ +   +
Sbjct: 203 PEQVKKAAFALDVNG-VSDVITAAGTQAYSSQYYIVKLIKKTE-KSSNIDDYKEKLKTVI 260

Query: 376 RITKASE 382
              K ++
Sbjct: 261 LTQKQND 267


>gi|157124569|ref|XP_001654110.1| rotamase [Aedes aegypti]
 gi|108873956|gb|EAT38181.1| rotamase [Aedes aegypti]
          Length = 159

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 287 FQSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            + ++ G+    +LA++      +     LG F +  +      ++ F+L K G+ + ++
Sbjct: 89  RKQIQSGEVTLPELAQQYSDCSSAKRGGDLGMFKRG-MMQKPFEEAAFAL-KVGEMSDIV 146

Query: 343 HGSFGYVIA 351
               G  + 
Sbjct: 147 DTDSGLHLI 155


>gi|116491271|ref|YP_810815.1| parvulin-like peptidyl-prolyl isomerase [Oenococcus oeni PSU-1]
 gi|290890818|ref|ZP_06553885.1| hypothetical protein AWRIB429_1275 [Oenococcus oeni AWRIB429]
 gi|116091996|gb|ABJ57150.1| Parvulin-like peptidyl-prolyl isomerase [Oenococcus oeni PSU-1]
 gi|290479590|gb|EFD88247.1| hypothetical protein AWRIB429_1275 [Oenococcus oeni AWRIB429]
          Length = 342

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 38/238 (15%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I E +Y+   TK  +   +          S ++ D  +R Y    SV    +NN +    
Sbjct: 36  ITEAKYMSSVTKTSAGEQL--------FVSMVMNDSLERLYGS--SVSTTTVNNEYTQEK 85

Query: 206 ADPSNAVLTQWFEKYKDNYRAPE-------YKRISYILFDVHEKEKKIEISNDELQAEYE 258
           A          +     ++ + E        K+I   L  V   +   +++  +L+  Y+
Sbjct: 86  AQ---------YGSSWSSFLSEEETTAKAYKKQIRTELLLVQAVKNYHKVTEAQLKKAYK 136

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
               K     I         +  +AD   ++LK GK F   A++     +  + G     
Sbjct: 137 TYTPKMNVSII------TVSSSSKADTVLKNLKAGKSFASQAKQYSGDTTTAANGGKMPS 190

Query: 319 YIPDVSLAD----SIFSLAKKGDFTPVIHGSFG-YVIAHVSNI-KPSFTVSFQEVKKD 370
           +     +      +     K G+++         Y+I  +++  K     S+++V  D
Sbjct: 191 FDSASPVVSSKIIAAAKALKTGEYSKKAISVNSEYIILKLNSKSKKESIGSYRDVLAD 248


>gi|154174986|ref|YP_001408954.1| ferric receptor CfrA [Campylobacter curvus 525.92]
 gi|153793160|gb|EAU01437.2| ferric receptor CfrA [Campylobacter curvus 525.92]
          Length = 291

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/306 (10%), Positives = 85/306 (27%), Gaps = 90/306 (29%)

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
           + + L+ L+        I+++G+      V   I                       + G
Sbjct: 66  ESQALNLLIRDRLEQAQIKNLGISVTPFEVNERIDAIA------------------KQNG 107

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           +   ++                   G   ++   +  K+   E    +          A 
Sbjct: 108 MTSTQFRSSVESQ------------GTSFTDFKNEVEKKMLQEKLYRNIAS------EAG 149

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
            + ++     ++E  K+ +    +     +LF     ++             E  + K  
Sbjct: 150 KNVTDERAKAYYEANKEQFNI--FNSAEIVLFRAASMQE------------LENQRGKLS 195

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
             +    + L    Q    +    +                    ++G F++        
Sbjct: 196 PLKGVQAQNLTLEYQSANPQLASIIAN-----------------TAIGDFTQ-------- 230

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
                          +     G+ + +V N   S+T SF ++K +I N +   +  + ++
Sbjct: 231 ---------------IFKTQEGFDMFYVKNKIGSYTPSFDQIKDEIINSLYQNEQQKTMQ 275

Query: 386 EDYKRL 391
           + + +L
Sbjct: 276 DYFDKL 281


>gi|220919173|ref|YP_002494477.1| DSBA oxidoreductase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957027|gb|ACL67411.1| DSBA oxidoreductase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 349

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S+ V  VG Q +         K +L  + Q+          +   L ++ L++++     
Sbjct: 32  SAPVAKVGGQAITTGELDELVKSDLKQLEQQY-------EEQKYQLKRQGLESMIRRRVF 84

Query: 100 DQFIEDIGLEADHGRVWGEIARSPL 124
           +   +  G+  D       +A+ P 
Sbjct: 85  EAKAKAEGITPDELVNRDVVAKIPE 109


>gi|85716332|ref|ZP_01047305.1| hypothetical protein NB311A_19130 [Nitrobacter sp. Nb-311A]
 gi|85696848|gb|EAQ34733.1| hypothetical protein NB311A_19130 [Nitrobacter sp. Nb-311A]
          Length = 319

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 29/192 (15%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M  + R  SR        V  F+ F+          +S  S  V V  + +         
Sbjct: 3   MTSLFRPFSR------LAVFAFLSFV-----SFNSPLSAQSVAVMVNGEPITTFDIEQ-- 49

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                    ++  +   + A      ++++D L+      +  +  G+      +    A
Sbjct: 50  -------RSRLIKISTHKSAS----RQEVIDELIGEKVKIKEAKKFGVNPTSADIDRAYA 98

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDVVGMFVGGMRPSNLLL 179
                 G     S +     LA +G+            L   + V G F   +  S+  +
Sbjct: 99  NM----GARMGMSPEQLTKSLASQGVRPDTIKARLRADLVWGSLVRGRFKESLLVSDRDV 154

Query: 180 DQAKRFYFENRS 191
           ++A +   E++S
Sbjct: 155 NEALKNSGEDQS 166


>gi|302534870|ref|ZP_07287212.1| lipoprotein [Streptomyces sp. C]
 gi|302443765|gb|EFL15581.1| lipoprotein [Streptomyces sp. C]
          Length = 212

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 6/153 (3%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
             +   T   VG +++  S+             Q            + GL++  L+ ++ 
Sbjct: 29  GETRPGTAAVVGGERITTSALQAQVGDVRAA--QDKSEQGAQLIGATAGLERLKLNKMIQ 86

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
            A L++  ED GL      V            +       +  + L +  +   +     
Sbjct: 87  SAVLERAAEDAGLSVSPKEVQDVRKA----QLEQLGGEKALRDAALQQAQLAPGQIEADT 142

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
              L R  +   +    +    L + AK  + E
Sbjct: 143 RFKLLRDKLFAHYGSQDKALAKLGEAAKALHIE 175


>gi|158520720|ref|YP_001528590.1| DNA-directed RNA polymerase, beta' subunit [Desulfococcus
           oleovorans Hxd3]
 gi|226699482|sp|A8ZV52|RPOC_DESOH RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP
           subunit beta'; AltName: Full=RNA polymerase subunit
           beta'; AltName: Full=Transcriptase subunit beta'
 gi|158509546|gb|ABW66513.1| DNA-directed RNA polymerase, beta' subunit [Desulfococcus
           oleovorans Hxd3]
          Length = 1447

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 10/99 (10%)

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADS 328
           + F  +KEA+     +K+G  F+ + ++ G   S +             E+    + AD 
Sbjct: 581 IHFSAKKEANSVLAEIKRGASFVDMQKKHG-DESGVDYERAMKKEDMITEFGLSEADADY 639

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           +FSL K+G+ + +I  S GY +  ++  +    + F+ V
Sbjct: 640 LFSL-KEGECSDIIGISDGYRLFKLAGYR--SEIPFEMV 675


>gi|291459856|ref|ZP_06599246.1| putative PPIC-type PPIASE domain protein [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417646|gb|EFE91365.1| putative PPIC-type PPIASE domain protein [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 342

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 272 VEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
           ++Q+V  +++ A +  +S+   G  F   A +  +   +I    + KE   + +   + F
Sbjct: 187 IQQIVVSDEESAKKLHESVTASGANFSYFARQFSEDP-EIDRTLYRKEE--EDAYYQAAF 243

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           SL + G  + VI     + I    +         +E KK +   +R            ++
Sbjct: 244 SL-EDGQISDVISQDGKFYIIKCVDSYDEKAT--EERKKRLEEAIRSGAFRRSYDSYAEQ 300


>gi|260813904|ref|XP_002601656.1| hypothetical protein BRAFLDRAFT_114914 [Branchiostoma floridae]
 gi|229286955|gb|EEN57668.1| hypothetical protein BRAFLDRAFT_114914 [Branchiostoma floridae]
          Length = 151

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 33/135 (24%)

Query: 248 ISNDELQAEY------EKNKEKYFSPEIRTVEQLVFP-----------------NQKEAD 284
           +S  + +A Y      +   EK           L+                    Q+EA 
Sbjct: 15  VSKSQGRAYYLNVHTKQSQWEKPTDAAQVRCSHLLVKHVGSRRPSSWKQDKITRTQEEAL 74

Query: 285 EAF----QSLKKGK-KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           E      Q +  G+     LA    +   +     LG F    +      ++ F L K G
Sbjct: 75  ELLNDFRQRIVSGEVTLAVLAATESDCSSARKGGDLGFFGPGQMQKP-FEEATFKL-KVG 132

Query: 337 DFTPVIHGSFGYVIA 351
           + +  +    G  I 
Sbjct: 133 ELSEPVFTDSGIHII 147


>gi|322387720|ref|ZP_08061329.1| peptidyl-prolyl cis-trans isomerase [Streptococcus infantis ATCC
           700779]
 gi|321141587|gb|EFX37083.1| peptidyl-prolyl cis-trans isomerase [Streptococcus infantis ATCC
           700779]
          Length = 329

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 25/199 (12%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS-----------NDELQA 255
           + S+  +     + +  Y       +S        ++ +I  S             EL  
Sbjct: 73  EVSDKEVEDAVAEEQKRYGDSYQIVLSRAGMTAESRKAQIRTSKLVEYAVKKAAEAELTD 132

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGS 314
           E  K     ++PE+ T + +   ++ +A E     ++ G  F QLA++        + G 
Sbjct: 133 ENYKKAYDEYTPEV-TAQVIKLDSEDKAKEVLAKAQESGADFAQLAKDNSTDEKTKANGG 191

Query: 315 FSKEYIPDVSLAD----SIFSLAKKGDFTPVIH------GSFGYVIAHVSNIKPSFTVSF 364
                     L D    + F+L   G  + VI        S  + I  +       + ++
Sbjct: 192 EITFDSASTELPDVVKKAAFALNVDG-ISDVITAPGTQAYSNSFYIVKLIKKTE-KSSNW 249

Query: 365 QEVKKDIANQMRITKASEK 383
           ++ K+ +   +   K ++ 
Sbjct: 250 EDYKEKLKTVILTQKQNDA 268


>gi|218440442|ref|YP_002378771.1| hypothetical protein PCC7424_3511 [Cyanothece sp. PCC 7424]
 gi|218173170|gb|ACK71903.1| conserved hypothetical protein [Cyanothece sp. PCC 7424]
          Length = 257

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 10/128 (7%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDI 310
           E++  + +NK  +   E   + Q++ P +  A E F  +++ +  F Q A          
Sbjct: 109 EVEKSFAENKLNF---EQIILYQIIVPYETLAWEIFYQIEEEEISFYQAAHLYNFDAKSR 165

Query: 311 SLGSFSKE---YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
               F  +   +I +  ++  +FS +K G+  P +    GY +  +            E+
Sbjct: 166 YYCGFEGQVYRWILNPEISSVLFS-SKVGEVIPPLKTEQGYHLFLIEEFISPELTP--EI 222

Query: 368 KKDIANQM 375
           +++I N+M
Sbjct: 223 RQEILNKM 230


>gi|295090959|emb|CBK77066.1| hypothetical protein [Clostridium cf. saccharolyticum K10]
          Length = 332

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 11/124 (8%)

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             +Q+ A+     + +G    + A  +G ++S+  LG   +          + F L + G
Sbjct: 183 AEDQETAERILAGISEGSSLEKAASAEGLTVSERKLGRAEESE----DFEYAAFGL-ETG 237

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
             + V+  +  Y +    N         +E   +   Q+   +  +  ++ Y   +E +A
Sbjct: 238 QVSEVVEDNGQYCVIRCDNDYD------EEATAERKEQIYEARREKAFQDIYGSFKEGIA 291

Query: 397 LGTS 400
           L  S
Sbjct: 292 LKDS 295


>gi|119476248|ref|ZP_01616599.1| hypothetical protein GP2143_07354 [marine gamma proteobacterium
           HTCC2143]
 gi|119450112|gb|EAW31347.1| hypothetical protein GP2143_07354 [marine gamma proteobacterium
           HTCC2143]
          Length = 332

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 90/320 (28%), Gaps = 73/320 (22%)

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV-W 116
           N+ +Q+    + +      S +     L K +L          Q   ++ +      V  
Sbjct: 45  NALQQQWRTNTGQQPSPRQSAQLIETELSKDVL---------LQRALELNIHRYDNIVYQ 95

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
             I         D K  +++F   L        +   H    + +  ++ M    +  +N
Sbjct: 96  RLIRNMNFLQLADGKTDNELFEQAL--------DMRLHLDDNVIKRRLIQMMEQRLLANN 147

Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
                                          PS+  +   F +     R P    I +I 
Sbjct: 148 ---------------------------PPLPPSDEAIKAEFNQRFSELRKPPLYSIEHIF 180

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEK-YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           F+   + +   I     +   +    K + SP ++  +      ++ A         G  
Sbjct: 181 FNQDRESEAPSIIATITEQNLDFQAAKHFSSPYLQGYKFDRQTPRQLAQNF------GNS 234

Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           F+   ++   +L  +S                          +   I  +FG     ++ 
Sbjct: 235 FVLSLKQAVPTLQSVS---------------------QPVAQWLGPIRSAFGLHYVWLNA 273

Query: 356 IKPSFTVSFQEVKKDIANQM 375
           ++P+     +EV+  +   +
Sbjct: 274 LEPARDAQLKEVEPQLRRDL 293


>gi|118586727|ref|ZP_01544164.1| PrtM precursor [Oenococcus oeni ATCC BAA-1163]
 gi|118432815|gb|EAV39544.1| PrtM precursor [Oenococcus oeni ATCC BAA-1163]
          Length = 342

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 38/238 (15%)

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I E +Y+   TK  +   +          S ++ D  +R Y    SV    +NN +    
Sbjct: 36  ITEAKYMSSVTKTSAGEQL--------FVSMVMNDSLERLYGS--SVSTTTVNNEYTQEK 85

Query: 206 ADPSNAVLTQWFEKYKDNYRAPE-------YKRISYILFDVHEKEKKIEISNDELQAEYE 258
           A          +     ++ + E        K+I   L  V   +   +++  +L+  Y+
Sbjct: 86  AQ---------YGSSWSSFLSEEETTAKAYKKQIRTELLLVQAVKNYHKVTEAQLKKAYK 136

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
               K     I         +  +AD   ++LK GK F   A++     +  + G     
Sbjct: 137 TYTPKMNVSII------TVSSSSKADTVLKNLKAGKSFASQAKQYSGDTTTAANGGKMPS 190

Query: 319 YIPDVSLAD----SIFSLAKKGDFTPVIHGSFG-YVIAHVSNI-KPSFTVSFQEVKKD 370
           +     +      +     K GD++         Y+I  +++  K     S+++V  D
Sbjct: 191 FDSASPVVSSKIIAAAKALKTGDYSKKAISVNSEYIILKLNSKSKKESIGSYRDVLAD 248


>gi|78044263|ref|YP_359467.1| hypothetical protein CHY_0611 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996378|gb|ABB15277.1| conserved domain protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 221

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 23/137 (16%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
            V  +G + V    F    +  +       G  V  E          +L+ L     L +
Sbjct: 52  VVARIGDRDVTLREFELFKRSYV-----LDGRTVTPEE---------VLEELKRRTVLKE 97

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR---EGINEKEY------I 152
             E   +      V   I           K +   +   L+      + E++Y       
Sbjct: 98  EAEKRKITVSDEEVEKAIQDYKEGMENLKKTNPAEYSEFLSYLEGLNMTEEQYWKSKEIF 157

Query: 153 DHYTKMLSRTDVVGMFV 169
           + Y K L    V    +
Sbjct: 158 EIYRKALVTGKVRKAIL 174


>gi|333026460|ref|ZP_08454524.1| putative lipoprotein [Streptomyces sp. Tu6071]
 gi|332746312|gb|EGJ76753.1| putative lipoprotein [Streptomyces sp. Tu6071]
          Length = 277

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 45/163 (27%), Gaps = 8/163 (4%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR--SVGLDKKILDN 92
              +       VG  ++  +   +   +    + +       SER    S  L +  L  
Sbjct: 67  GGTAHPGAAAVVGNTRITEAQLQHRVGELHDAVRELSSDAQTSERIISGSGSLARPTLQG 126

Query: 93  LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
           +V    + +   D G+      V    A+         +    V    L R G+      
Sbjct: 127 MVRDRVVARAAADKGVTVSRAEVQSARAQLT--QQAGGEQGLKV--EWLTRYGVPPSRLD 182

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSN--LLLDQAKRFYFENRSVD 193
           D   + ++   +           +    +D+      +   VD
Sbjct: 183 DALRENIAEQKLYAALGADPSSPDGKATVDKTLAATAKKLKVD 225


>gi|297812121|ref|XP_002873944.1| hypothetical protein ARALYDRAFT_488823 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319781|gb|EFH50203.1| hypothetical protein ARALYDRAFT_488823 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 296

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 13/118 (11%)

Query: 272 VEQLVFPNQKEADEAFQSLKK----GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
           V+ L+  +     E F  L+K    G++   LA E            LG      +    
Sbjct: 95  VQHLLVKDDD--IELFAELQKRILEGEEMSDLAAEYSICPSKKDGGILGWVKLGQMV-PE 151

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVS-NIKPSFTVSFQEVKKDIANQMRITKAS 381
             ++ F  A+           FG  +  V    +P   +  +E+   + + + + +A 
Sbjct: 152 FEEAAFK-AEPNQVVR-CRTQFGLHLLQVLSEREPVKDIQVEELHSKMQDPVFMDEAQ 207


>gi|49475336|ref|YP_033377.1| hypothetical protein BH05420 [Bartonella henselae str. Houston-1]
 gi|49238142|emb|CAF27350.1| hypothetical protein BH05420 [Bartonella henselae str. Houston-1]
          Length = 322

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 43/138 (31%), Gaps = 17/138 (12%)

Query: 30  LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
           +S+   + + +  VV+V  + +         +     + QK G            L ++ 
Sbjct: 30  VSEIPSTFAQTVIVVTVNGKPITNYDIQR--RAAFLRLQQKQG-----------NLSEQA 76

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
            + L++    +  I+   +E  +  V              N  + D     L    I  +
Sbjct: 77  KNELINEVLKNIEIKRRNIEVSNNEVESAFKNFAA----QNNMTVDQLNQILIDNDITVQ 132

Query: 150 EYIDHYTKMLSRTDVVGM 167
            + D+    L    +V  
Sbjct: 133 HFKDYIRGQLGWGRLVNA 150


>gi|303389522|ref|XP_003072993.1| peptidyl-prolyl cis-trans isomerase [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302137|gb|ADM11633.1| peptidyl-prolyl cis-trans isomerase [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 138

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 29/125 (23%)

Query: 255 AEYE---KNKEKYFSPEIRTVEQLVFPNQK--------------EADEAFQSLKK---GK 294
             Y      K +    E   +  ++  ++K              +  E ++ LK      
Sbjct: 14  YFYNTETAEKTQRKPSEGFRLYHILIKHEKSRKPVDVSVEEAFLKIKEIYEELKAKVNDS 73

Query: 295 KFIQLAEEQ-------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
            F ++ +E          S     LG      +         FSL ++G+ +  +    G
Sbjct: 74  DFKEIFKEYAYKHSQCSSSKRGGDLGFVCGNEMMK-EFERPAFSL-RRGEISAPVSTPSG 131

Query: 348 YVIAH 352
           + I +
Sbjct: 132 FHIIY 136


>gi|83815274|ref|YP_445915.1| hypothetical protein SRU_1798 [Salinibacter ruber DSM 13855]
 gi|83756668|gb|ABC44781.1| hypothetical protein SRU_1798 [Salinibacter ruber DSM 13855]
          Length = 304

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 70/173 (40%), Gaps = 15/173 (8%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEAFQSLKKG-----KKF 296
           E  +  + ++++  +E++KE+    E    V+ L  P++  A  A Q+L+         +
Sbjct: 132 EADVRPTPEKVRTYFERHKEQLRLREPYVRVQYLAAPDRPTAQTARQALRTPPAPPDTTW 191

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA------KKGDFTPVIHGSFGYVI 350
            +L  E     +       S+ ++P   L   + +LA      ++G+ TPV+  S  Y +
Sbjct: 192 ARLVTEYATDTTRARR--LSRRFVPQSRLGQQVPALADRLADLQEGETTPVVQASGRYHV 249

Query: 351 AHVSNIKPSFTVS-FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
             +       T      V+  I  ++RI    +    + +RL        +++
Sbjct: 250 LRLDRRLSEGTPPELDWVEPKIRRRLRIRARKQIHATEVQRLRNRAQADGTLE 302


>gi|227499518|ref|ZP_03929625.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227218397|gb|EEI83648.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 308

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/365 (12%), Positives = 104/365 (28%), Gaps = 104/365 (28%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           +      ++ +       S +  + S  + + SV  + +    +    K      S+  G
Sbjct: 16  LVLAIFSIILLT------SCSKTNFSNENVIASVNNKTISKDLYSKELKFYQSYYSKVYG 69

Query: 73  FVVNSERARSVGLDKKIL-----DNLVSGATLDQFIEDIGLEADH---GRVWGEIARSPL 124
               +E+      + ++L     D+++    +   +E   ++ D      +   I+    
Sbjct: 70  ENFLNEKNDRGKTNDEVLREDLVDSMIKDQVMLNDLEKNKIKLDDNKSNELKKLIS---- 125

Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
               D     D   + +   G+NE  + D                          D  ++
Sbjct: 126 ----DKLNGEDSLKANIKALGVNENTFNDII----------------------YNDSIRK 159

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
            ++E                I    ++ + ++++K K                       
Sbjct: 160 AHYEL------------FLKINKIKDSDVLEFYKKNK----------------------- 184

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
                   +Q  Y+ N              LVF +++EA     S+K    F     +  
Sbjct: 185 -------YIQKLYKYNA-------------LVFEDEQEAKLIKDSIKDANDFKSYINK-- 222

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
              S  +    + +++ D     S+  L  K   + +I     Y I  +++   +     
Sbjct: 223 ---SVRNFSVINSDFVYDKDELLSLSKLKNKDKVSDIIKYKNKYYILMINSFNENENELL 279

Query: 365 QEVKK 369
              K 
Sbjct: 280 LRAKD 284


>gi|168047948|ref|XP_001776430.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672156|gb|EDQ58697.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 111

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 13/100 (13%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKG----------KKFIQLAEEQG---KSLSDISLGSFSK 317
            V  ++   Q    + +  L++G          K+F +LA++      +     LG  ++
Sbjct: 11  KVRHILSEKQGLMMDVYNQLQRGWLVFGHKVPPKEFSKLAKKYSECRSAKDGGDLGWVAR 70

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
             +        +      G  + V   S G+ +  V   K
Sbjct: 71  AKLGTAGPFQEVSFTTPVGSCSNVFQSSQGFHVVLVEARK 110


>gi|242309396|ref|ZP_04808551.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523967|gb|EEQ63833.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 275

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 73/201 (36%), Gaps = 30/201 (14%)

Query: 202 VPAIADPSNAVLTQW-------FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
           +      + A +  +       +E YK+  +    K+  Y +      +    +  +EL 
Sbjct: 82  IARQNQATAAQVESYIRSNGGNWENYKEEIKKGILKKKLYQVIAQESLK---MVDENELL 138

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
             Y  +KE++  P+   V +    +             GK    L +  GK   ++  G 
Sbjct: 139 NYYNAHKEEFSIPQSIDVTKFFSKD-------------GKALEALIQSNGK---EVQKGV 182

Query: 315 FSKEYIPDVSLAD----SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            S+  +   +  +    + F+  K G FTP+      +V+  +        + F+ V+  
Sbjct: 183 QSENEVLQTAALNPQIVAAFTQGKIGTFTPIYPIGDDFVVFLIKAKNNPAILPFENVRNV 242

Query: 371 IANQMRITKASEKVKEDYKRL 391
           +  ++   K    + E +++L
Sbjct: 243 VLQKIMGQKEDYLIYEYFEKL 263


>gi|283795944|ref|ZP_06345097.1| conserved hypothetical protein [Clostridium sp. M62/1]
 gi|291076585|gb|EFE13949.1| conserved hypothetical protein [Clostridium sp. M62/1]
          Length = 332

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 11/124 (8%)

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             +Q+ A+     + +G    + A  +G ++S+  LG   +          + F L + G
Sbjct: 183 AEDQETAERILAGISEGSSLEKAASAEGLTVSERKLGRAEESE----DFEYAAFGL-ETG 237

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
             + V+  +  Y +    N         +E   +   Q+   +  +  ++ Y   +E +A
Sbjct: 238 QVSEVVEDNGQYCVIRCDNDYD------EEATAERKEQIYEARREKAFQDIYGSFKEGIA 291

Query: 397 LGTS 400
           L  S
Sbjct: 292 LKDS 295


>gi|168701469|ref|ZP_02733746.1| hypothetical protein GobsU_18225 [Gemmata obscuriglobus UQM 2246]
          Length = 329

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 96/274 (35%), Gaps = 40/274 (14%)

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN------RSVDYIVLNNR 200
             +++ DH  +     ++ G     +  S +   Q  +   E       R+   + ++  
Sbjct: 57  TREQFADHLIRRYGPKELKGFVYRQI-VSTVFARQGLKLSPEEIQEQLDRTAAALKMSRE 115

Query: 201 HVPAIADPSN-AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
            + A    S    + +W E             +  I+     K K    +  EL+  ++ 
Sbjct: 116 QLGADILKSQGKTIDEWHED----------VNVPIIMLSRLAKAKAAPPTEAELRQAFDV 165

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAE---EQGKSLSDISLGSF 315
                   E      +++ ++KEA  A++ +    K+F   A    + G+  S I+    
Sbjct: 166 RYG-----EKLDCRIIIWGDEKEARAAYEKVCSSEKEFDAHARRCTQAGQPRSGIATDGR 220

Query: 316 SKEYIPDVSLA--------DSIFSLAKKGDFTPV----IHGSFGYVIAHVSNIKPS-FTV 362
            +                  +  +  + G+ +P+    I G  G++      I P+  T 
Sbjct: 221 GEPIPRAQPFEGHPAEQAAHAAAAKLRPGEVSPLIPVEIEGERGFIALKCDRIIPADRTK 280

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
           SF++ K  +A+ +   K  ++ +   K + +  A
Sbjct: 281 SFEKEKAALADDVTGAKVDKEFRRLSKEIMKEAA 314


>gi|311070875|ref|YP_003975798.1| putative lipoprotein [Bacillus atrophaeus 1942]
 gi|310871392|gb|ADP34867.1| putative lipoprotein [Bacillus atrophaeus 1942]
          Length = 257

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 7/154 (4%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
                TV  V  +K+  S + +          Q      + + A+   + K+ +++LV  
Sbjct: 63  TDDKKTVAIVNNEKLTGSDYNSVLTSAQTQYQQSGQDPTSKDAAKQ--IKKQTINSLVGQ 120

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             L Q     G +A    V  ++A S     K +K     F + L + G+N  +      
Sbjct: 121 TLLLQEANKKGYKASDKEVDKQLAESKK-QYKSDKE----FNAALKKAGLNTTKLKSELA 175

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
             +     V   V   + ++  +      Y   +
Sbjct: 176 DNIKYEKYVEKEVPKDKVTDKEVKDYYDQYAAKQ 209


>gi|222099866|ref|YP_002534434.1| hypothetical protein CTN_0892 [Thermotoga neapolitana DSM 4359]
 gi|221572256|gb|ACM23068.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
          Length = 580

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 99/273 (36%), Gaps = 39/273 (14%)

Query: 134 HDVFVSRLAREGINEKE--YIDHYTKMLSRTDVVGMFV-------GGMRPSNLLLDQAKR 184
           +D + + L+   IN  +  + +   K L     +   V         ++PS   ++Q  +
Sbjct: 71  NDYYSNLLSSYRINSLDPLFEEPRLKALIADVFLQQKVILYYAEKNNIKPSKKEVEQEVK 130

Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK---YKDNYRAPEYKRISYILFDVHE 241
                   D   L+              + + +     Y+ +Y  P+ +    +   V +
Sbjct: 131 SIINTIKNDQNQLD-------------QIKRRYGSLSVYEKDYLEPQIR----VQLTVKK 173

Query: 242 KEKKI-EISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            ++ +  +S DE++  +E+NKE+  +  +   +E + F +     E          F + 
Sbjct: 174 VQEAVGAVSEDEIKQYFEENKEELQNQYDRVDLEAISFDSSSTVQEFLAK-ASEMGFDEA 232

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           A   G ++   S  + ++   P+  +  ++FS A  G      +    + +  V     S
Sbjct: 233 ASSMGLTVQPFS--NATRGIFPE-EIDTALFS-ATPGSIVGPFYFLDQWYVFRVQ--TSS 286

Query: 360 FTVSFQEVK-KDIANQMRITKASEKVKEDYKRL 391
               F   +  D  ++++     EK ++  +  
Sbjct: 287 VLTDFNAFENSDAYSEVKTKLEQEKFQKWLEEF 319


>gi|163784410|ref|ZP_02179297.1| hypothetical protein HG1285_12417 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880324|gb|EDP73941.1| hypothetical protein HG1285_12417 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 312

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 98/287 (34%), Gaps = 24/287 (8%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-----EA 283
            KR+S I   +   + ++ I+  EL+  YEKNKEK+   + + ++       +     +A
Sbjct: 27  KKRLSSINAKLITIQPEVNITEKELKDYYEKNKEKFSQKKGKKIKIFKIATDEKDSKLKA 86

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            + F  LK G     +            +    K+Y     + + I +L+        I 
Sbjct: 87  QKLFSDLKSGNIPSNV------KPIFDDVFLKGKKYNLPEKVLEKIKNLSNNTKI-EFIK 139

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
               Y + +    K +  + +++ K  + N +   K  + +K+  + +        ++  
Sbjct: 140 TKDAYYLIYYEGEK-AIPMPYKKAKTQVKNSVLEEKRGKILKKIKESIS--REKSLNLKL 196

Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
           +  +      ++    +     K         +   +   F K   L             
Sbjct: 197 LKEKYNAKIEEIKNEKYVQLQFKYGLSPTELDELVKIKNGFSKPYILK---------DKV 247

Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
           +   I + IP    + E+    +K   +  K  + +S   N+L +  
Sbjct: 248 VIFYITKVIPPSSEEYEKSKKQLKPLLEDQKFNDIISMLINKLKMRQ 294


>gi|226293704|gb|EEH49124.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Paracoccidioides
           brasiliensis Pb18]
          Length = 190

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAFQS----LKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  +++EA E  +     ++ G+           +   +     LG F +  +      +
Sbjct: 105 ITRSKEEALEILRRHEESIRSGEKTLGDIAMSESDCSSARKRGDLGFFGRGEM-QAEFEE 163

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L + G  + ++  + G  +  
Sbjct: 164 AAFAL-EPGQLSGIVETASGVHLIE 187


>gi|1074599|pir||A64018 hypothetical protein HI1003 - Haemophilus influenzae (strain Rd
          KW20)
          Length = 60

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 1  ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS 45
          ML E +   + + ++K  L ++ V FL+ G+S  LFS S  +    
Sbjct: 1  MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAGK 45


>gi|302893486|ref|XP_003045624.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256726550|gb|EEU39911.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 177

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 270 RTVEQLVFPNQKEA----DEAFQSLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIP 321
           R  E  +  ++++A          +K G     +LA    +   +     LG F K  + 
Sbjct: 88  REAE--ITRSKEDAYQIIQAHEDKIKSGSITLGELALTESDCSSARKRGDLGYFGKGDM- 144

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                D+ F L + G  + ++  + G  +  
Sbjct: 145 QKEFEDAAFGL-QPGQMSGIVETASGLHLIE 174


>gi|298528165|ref|ZP_07015569.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511817|gb|EFI35719.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 312

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 90/285 (31%), Gaps = 63/285 (22%)

Query: 19  VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
            ++F+  L WG S           V +V  Q +      + +  +    S+  G   + +
Sbjct: 9   ALVFLAVLAWGCSP---DSPEEGVVATVNGQPIYLDEVESGYDADYFKWSR--GVPPDLK 63

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW---GEIARSPLFHGKDNKFSHD 135
             +S      +L +LV    ++Q +   G   D G V     EI +       D  F   
Sbjct: 64  EIKSSYGR--VLLDLVVQKLIEQELNSSGHAVDPGEVAKIEREIRQD----YPDGGF--- 114

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
                L  E I+ + +     K L                                  + 
Sbjct: 115 --EEVLIEEHIDLEFWRASILKDLM---------------------------------WD 139

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN----- 250
                 +          + +++  + +++  PE  RI ++     +++K  E+ +     
Sbjct: 140 KFKKEVLRPRISLDVEDVKEYYHYHIEDFYIPE--RIVFLHLSSGKEDKLQEVLDTFQES 197

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           +++    EK  +         V++L    Q E       L+KG+K
Sbjct: 198 EDISRIREKYPQVNVGEYEMRVDRLPLGLQDE----LTGLQKGEK 238



 Score = 47.3 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 62/162 (38%), Gaps = 7/162 (4%)

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           K + +  F       +I +  ++++  Y  + E ++ PE      L    + +  E   +
Sbjct: 134 KDLMWDKFKKEVLRPRISLDVEDVKEYYHYHIEDFYIPERIVFLHLSSGKEDKLQEVLDT 193

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFG- 347
            ++ +   ++ E+  +    +++G +  +     + L D +  L +KG+ + +     G 
Sbjct: 194 FQESEDISRIREKYPQ----VNVGEYEMRVDRLPLGLQDELTGL-QKGEKSQIQKNRQGL 248

Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
           Y    V + K S  +   +V   I   +   K  +      +
Sbjct: 249 YYRVMVMDRKDSKLLKPHQVYDIIEENLVQEKMHKVFYNWLE 290


>gi|152991383|ref|YP_001357105.1| hypothetical protein NIS_1642 [Nitratiruptor sp. SB155-2]
 gi|151423244|dbj|BAF70748.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 279

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 46/160 (28%), Gaps = 37/160 (23%)

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
            ++ +  L+     ++ I+ +G+  D   +   + +        + F        +  +G
Sbjct: 48  RREAIQLLIREKLENEQIKKLGVTVDDIELDQALEKIAK-QKGTDLFG---LQEAIISQG 103

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
            + +++ +   K L R  +                                         
Sbjct: 104 GDWEKFKEGLRKQLLRKKLYAALTR--------------------------------QQT 131

Query: 206 ADPSNAVLTQWFEKYKDNYR-APEYKRISYILFDVHEKEK 244
              S   L +++E +K+ +  A E   + YI        K
Sbjct: 132 QKLSEKDLKEYYETHKNEFEIAKEADIVKYISPSKEVLAK 171



 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 101/257 (39%), Gaps = 28/257 (10%)

Query: 138 VSRLAREGINEKEYIDHY-TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
              +   G++ +E I     + L    +  +   G+   ++ LDQA     + +  D   
Sbjct: 38  NKVINTTGLSRREAIQLLIREKLENEQIKKL---GVTVDDIELDQALEKIAKQKGTDLFG 94

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
           L    +    D         +EK+K+  R    ++  Y       +++  ++S  +L+  
Sbjct: 95  LQEAIISQGGD---------WEKFKEGLRKQLLRKKLYAALT---RQQTQKLSEKDLKEY 142

Query: 257 YEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
           YE +K ++  + E   V+ +    +  A  A   L +      L + + K    I L   
Sbjct: 143 YETHKNEFEIAKEADIVKYISPSKEVLAKIAQNPLYQPSNNALLQKGEEK----IDLQKV 198

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           + ++         + +   +G FT ++     Y++ ++ +      + F+E K  I N++
Sbjct: 199 NPQFAY-------LLNQTPEGSFTKILPMGDKYLLIYIKHKYGKEYIPFEEAKGYILNRL 251

Query: 376 RITKASEKVKEDYKRLE 392
             T   + VKE + +L+
Sbjct: 252 SKTSGVKNVKEYFDKLK 268


>gi|195346154|ref|XP_002039632.1| GM23077 [Drosophila sechellia]
 gi|194134858|gb|EDW56374.1| GM23077 [Drosophila sechellia]
          Length = 166

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQ-----SLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA    +      + +   F +LA        +     LG F +  +   +  +
Sbjct: 81  ITRTKEEAQLLLEVYRNKIVNQEATFEELARSYSDCSSAKRGGDLGKFGRGQM-QAAFEE 139

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F L      + ++    G  I 
Sbjct: 140 AAFKL-NVNQLSGIVDSDSGLHII 162


>gi|148682251|gb|EDL14198.1| mCG1030936 [Mus musculus]
          Length = 134

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++     +  EA + LK   +F ++A +  +  +  +  LG  ++  +      ++
Sbjct: 39  KVRHILCEKHGKIMEAMEKLKSRMRFSEVATQYSEDKARQEGDLGWMTRGSMVGP-FQEA 97

Query: 329 IFSLAKKGDFT 339
            F++   G  +
Sbjct: 98  AFAVPIVGWIS 108


>gi|315050532|ref|XP_003174640.1| peptidyl-prolyl cis-trans isomerase ssp1 [Arthroderma gypseum CBS
           118893]
 gi|311339955|gb|EFQ99157.1| peptidyl-prolyl cis-trans isomerase ssp1 [Arthroderma gypseum CBS
           118893]
          Length = 219

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 35/120 (29%), Gaps = 27/120 (22%)

Query: 258 EKNKEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-- 294
           +++              L+                   ++ EA E      Q ++ G+  
Sbjct: 99  DRHGASGQGEGKIRASHLLIKHNESRRPSSWRESEITRSKSEAIEILRSHKQRIEAGEAS 158

Query: 295 --KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                    +   +     LG F +  +       + F+L K G+ + ++  + G  +  
Sbjct: 159 LGDIATSESDCSSARKRGDLGFFGRGEM-QAEFEQAAFAL-KVGEVSDIVETASGVHLIE 216


>gi|237750606|ref|ZP_04581086.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229373696|gb|EEO24087.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 294

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 61/185 (32%), Gaps = 56/185 (30%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V  + +   +             +++   ++++R R+        D LV+    +  I+ 
Sbjct: 45  VNGEPITLHAI------------KQVENALHTDRLRAT-------DILVTEKLKEAEIKR 85

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
           + +E +  ++  +IA+      + N  + D F + + REG++  EY     + +   +++
Sbjct: 86  LKIEINDIQLDSQIAQI----AQQNGMNLDQFYAAIMREGMSLVEYRTKLKEQMLAQELM 141

Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
              +                                           L +++ ++ D + 
Sbjct: 142 RKILFSSNVGQ---------------------------------EDELRKYYNEHLDEFV 168

Query: 226 APEYK 230
            P+  
Sbjct: 169 IPKEV 173


>gi|312876281|ref|ZP_07736267.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796927|gb|EFR13270.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 230

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 59/176 (33%), Gaps = 24/176 (13%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
           K S+  +A I  + + +  ++ G S A         V  V   K+       ++  E   
Sbjct: 2   KRSKILIAGICSLAVLIGIVVVGWSLASKKELPKDVVAVVNGHKIYKKDLDMAYSLEELR 61

Query: 67  IS------QKIGFVVNSERARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGR 114
                   +++     ++ A+ +         ++ILD ++    L    +  G E     
Sbjct: 62  YENAKVSFEELKKKYGADAAKELEGSLRKKTRQEILDEMIEWLVLYDEAKKEGCEVSLDE 121

Query: 115 VWG-------EIARSPLFHGKDNKFSH-----DVFVSRLAREGINEKEYIDHYTKM 158
                      I           + ++     ++  S + ++GI+EKE+ +   K 
Sbjct: 122 AKAYYNKTQKMIQDVLSDKLSTGEMNNTQRAIELINSFVKKQGISEKEHEEMVIKE 177


>gi|332361670|gb|EGJ39474.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis
           SK1056]
          Length = 335

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R + ++    +K  + E++++  +A +E       +PE+ T + +   ++ +  E  
Sbjct: 109 EQIRTNMLVEHAVKKAAEKELTDENYKAAFENY-----TPEV-TAQIIKVDSEDKGKEVL 162

Query: 288 QSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKG--DFT 339
           +  K  G  F Q+A+E     +    G   K       +PD ++  + F+L + G  D  
Sbjct: 163 EKAKAEGADFSQIAKENSTDAATKEKGGEIKFDSGSTDVPD-AVKKAAFALEENGVSDLV 221

Query: 340 PVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            V    +   Y I  +   K   + ++++ K  +   +   K  +
Sbjct: 222 TVPDSQYSASYYIVKLVK-KSEKSSNWKDYKDKLKKIIIAQKEKD 265


>gi|150021257|ref|YP_001306611.1| hypothetical protein Tmel_1379 [Thermosipho melanesiensis BI429]
 gi|149793778|gb|ABR31226.1| hypothetical protein Tmel_1379 [Thermosipho melanesiensis BI429]
          Length = 536

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 92/271 (33%), Gaps = 27/271 (9%)

Query: 137 FVSRLAREGINEKE--YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           +   L    I E +  + +   K     D++         + L   +      E   +D 
Sbjct: 73  YSQALTYYQITEVDPIFEEPMLKTSLLNDLID------TKTVLYYAEVNNIKPEKTEID- 125

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKY---KDNYRAPEYKRISYILFDVHEKEKKIEISND 251
              +           N  L  +  +     +NY+      I   L     ++K  +I   
Sbjct: 126 ---SAIEEQVKKVEENEKLLNYVNQKFGGIENYKKSIEPDIIRYLTINKVRKKVAKIDES 182

Query: 252 ELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEADE-AFQSLKKGKKFIQLAEEQGKSLSD 309
           E++  YE+N++      +   V+ + F NQ  A+    Q+L KG  F Q A + G S+ +
Sbjct: 183 EMKDYYEENRDDLIVKYDTADVDFVSFSNQASANNFINQALIKG--FDQAATDLGLSVQN 240

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK- 368
                  +  I      D IFS          +     Y +  V++       +F++   
Sbjct: 241 YPNF---RRGIIAQEFEDVIFSSTNT--LVGPVPLGSNYFVFKVNSFT--SVDTFEKFSL 293

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGT 399
                ++      ++ + + ++ +    +G+
Sbjct: 294 SKGYQEVMSQLQGDRFRAEMEKFKNEENIGS 324


>gi|254281981|ref|ZP_04956949.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
 gi|219678184|gb|EED34533.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
          Length = 307

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/189 (11%), Positives = 54/189 (28%), Gaps = 18/189 (9%)

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
           ++D+Y   +              E +  I  + +   Y +N  +Y  P I T   +    
Sbjct: 99  HRDDYVIKQRMVQKVEYLARGFGEAEQLIDRNAVATYYVENISRYEEPSIATFAHVFVRG 158

Query: 280 -QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP----------DVSLADS 328
               A +  + L++      +A     ++       +   Y+                  
Sbjct: 159 LDDNARQRIKGLQQALSREDIA--FSSAMGRGDRFVYHANYVERSRDMIDSHFGERFGAK 216

Query: 329 IFSLAKKGDF-TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI----TKASEK 383
           +F ++         +    GY +  +    P+   S   +   +A   R      +  + 
Sbjct: 217 LFEMSPDQKRWQGPVASDHGYHLVMLFKRDPASVPSLDSIYPRVAEDARRVALDQQTEQA 276

Query: 384 VKEDYKRLE 392
           + +     E
Sbjct: 277 LTDIVSNYE 285


>gi|154249832|ref|YP_001410657.1| hypothetical protein Fnod_1153 [Fervidobacterium nodosum Rt17-B1]
 gi|154153768|gb|ABS61000.1| conserved hypothetical protein [Fervidobacterium nodosum Rt17-B1]
          Length = 560

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 111/314 (35%), Gaps = 54/314 (17%)

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD----------------VHE 241
               + A     +  + +  +  K +    +  +  Y                       
Sbjct: 123 KVNDIKADKKKLDEEVKKEMDNIKKDQAKSQQIKAQYGSLSNYEKEFRKNKEQELIISAV 182

Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIR-TVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
           KEK   IS DE++  Y +NK        +  VE   F ++ E           + F++LA
Sbjct: 183 KEKLGAISEDEIKKYYNENKNDIVQKYTKAEVEYATFNSKDEM----------ENFVKLA 232

Query: 301 EEQGKSLSDISLG------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
            E+G + +   L       +  K  +P+  L   IF        +   + SF   + +V 
Sbjct: 233 TEKGVTQAASELSVTLSPYTLQKGTLPE-ELEKEIFDATST-LVSLPYNNSF--FVFNVK 288

Query: 355 NIKPSFTVSFQE-VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
           +++ +   +++  VK D   ++R    ++K  +++K+ ++   +   + +          
Sbjct: 289 SVQKAD--TYENFVKTDGYTEVRTELINKKFSDNFKKWKDENKVSFELRD---------- 336

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
             P+     K +  +    +   ++   ++F  D+       +A    +   V     + 
Sbjct: 337 --PVYKAWYKALSSENKDLLSVYKEFYEQLF--DEKGEVRTDIANEQKAAFLVVADRIVE 392

Query: 474 ARDRKLEEVLTDVK 487
           + D  LE+V  DVK
Sbjct: 393 STDTALEKVKEDVK 406


>gi|332295221|ref|YP_004437144.1| hypothetical protein Thena_0367 [Thermodesulfobium narugense DSM
           14796]
 gi|332178324|gb|AEE14013.1| hypothetical protein Thena_0367 [Thermodesulfobium narugense DSM
           14796]
          Length = 178

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           ++ + F++  +     S +    + +V    +  S     +          +   V+   
Sbjct: 4   IVLLCFVLVFVVMVKPSFADDKVLATVNGTSITQSQVDAIYNN--------LPPNVDK-- 53

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
             +  L K+IL+ L+    L    +  GLE +  +V   I  
Sbjct: 54  -TNPDLKKEILNRLIENLVLLDEAKKEGLE-NDPKVIEAINN 93


>gi|218885390|ref|YP_002434711.1| hypothetical protein DvMF_0286 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756344|gb|ACL07243.1| hypothetical protein DvMF_0286 [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 415

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/354 (10%), Positives = 86/354 (24%), Gaps = 94/354 (26%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V +V  Q +   +            S   G   + E+ ++      +L +L+    +
Sbjct: 40  EGVVATVNEQPITLRTLEAVHDMSSMSWS---GHAPSVEQLQAQY--GAVLSDLIVQELV 94

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q +    +    G V                                            
Sbjct: 95  AQALARENIAVSDGEVAEA---------------------------------EAEVRGDY 121

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
              +     V      +L   + +      + +  I+     +P         +  ++  
Sbjct: 122 PAGEFEKSLVEEYIDLDLWRSRLRARIAMQKFMRLILRPTISIPL------EEVETYYAA 175

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-- 277
           ++ +YR P                                          R V+ LV   
Sbjct: 176 HRQDYRLP------------------------------------------RRVQFLVVAG 193

Query: 278 PNQKEADEAFQSLKKGKKFIQL-AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
           P++   D+A      G K   + A +   ++ ++      ++ +P  +L     +    G
Sbjct: 194 PDKAAVDKARALSLGGAKPADVEAAQPSVTVREVK---MRRDRLP--ALWSKELAGLAPG 248

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
             + V  G +GY    +        +        +   +   K  E      + 
Sbjct: 249 QASAVKQGEWGYQSFLLVGEIAEKQLELSHAYPLVERVLLERKMDEAYARWMEA 302


>gi|148240691|ref|YP_001226078.1| hypothetical protein SynWH7803_2355 [Synechococcus sp. WH 7803]
 gi|147849230|emb|CAK24781.1| Conserved hypothetical protein [Synechococcus sp. WH 7803]
          Length = 284

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 63/203 (31%), Gaps = 30/203 (14%)

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
            R    +   +     +  PS+  L    E + + + +        +  D   + +++  
Sbjct: 101 RRLRQKMEFVSHGEQPLTPPSDQQLQAHLEAHPERFSSEPRFSFQQVFLDPSRRGERLNR 160

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
             + L  E  +  +    P           +  +      +  +G++  +L  + G + +
Sbjct: 161 DAEALVVELNQ-ADAAADP----------SSLGDPLAMASASWQGERRSELLAQFGTTFT 209

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
           D                         +G +   I  ++G  +  VS+I P       +V+
Sbjct: 210 D-------------------ALQQQPQGRWVGPISSAYGMHLVRVSSITPGELPPLDQVR 250

Query: 369 KDIANQMRITKASEKVKEDYKRL 391
           + +    +  +     +  Y+ L
Sbjct: 251 EGVLRDWQDVQRQNHKESYYRNL 273


>gi|332712099|ref|ZP_08432027.1| hypothetical protein LYNGBM3L_71240 [Lyngbya majuscula 3L]
 gi|332348905|gb|EGJ28517.1| hypothetical protein LYNGBM3L_71240 [Lyngbya majuscula 3L]
          Length = 252

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 66/199 (33%), Gaps = 19/199 (9%)

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK--KIEISNDEL 253
           V+N          +   +    ++ +   R  +       L D     +  +  IS+  L
Sbjct: 36  VINKAAQERGITVTPEDVQAQADEIRYANRLEKAAETLAWLADQMVTAEDWEAGISDRLL 95

Query: 254 QA------EYEKNKEKYFSP----EIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEE 302
                    Y+  ++ +       E   V Q++  +++ A E F  +++G+  F + A  
Sbjct: 96  AQKLAESLFYKDVEKSFAQNRLDFEQVLVYQILVDSEEIAQELFYQIEEGEISFYEAAHF 155

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSL---AKKGDFTPVIHGSFGYVIAHVSNIKPS 359
                       +    +P  S    I +L    + G+ T  +    GY +  V    P+
Sbjct: 156 YDIDPERQRRCGYE-GKLPRWSFKPEIAALIFSVQPGEVTHPLQTEQGYHLFLVEEFIPA 214

Query: 360 FTVSFQEVKKDIANQMRIT 378
                +E  K+I   M   
Sbjct: 215 ELT--EEKSKEILQSMFQE 231


>gi|325697160|gb|EGD39047.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis SK160]
          Length = 335

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R + ++    +K  + E++++  +A +E       +PE+ T + +   ++ +  E  
Sbjct: 109 EQIRTNMLVEHAVKKAAEKELTDENYKAAFENY-----TPEV-TAQIIKVDSEDKGKEVL 162

Query: 288 QSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKG--DFT 339
           +  K  G  F Q+A+E     +    G   K       +PD ++  + F+L + G  D  
Sbjct: 163 EKAKAEGADFSQIAKENSTDATTKEKGGEIKFDSGSTDVPD-AVKKAAFALEENGVSDLV 221

Query: 340 PVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            V    +   Y I  +   K   + ++++ K  +   +   K  +
Sbjct: 222 TVPDSQYSASYYIVKLVK-KSEKSSNWKDYKDKLKKIIIAQKEKD 265


>gi|163746451|ref|ZP_02153809.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380336|gb|EDQ04747.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 412

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 19/172 (11%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           + V  V  + +          Q+     Q IG                ++D+L+      
Sbjct: 36  APVARVNDEAITGYEV-----QQRQRFMQLIGAPGTDS--------NSVIDSLIEDRLRG 82

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q +E  GLE     +    A    F G+ +  S + F+  L +  I+E+ + D      +
Sbjct: 83  QILEQAGLEVTPDGIR---AGMTEFAGRAD-LSTEEFLKVLGQAQISEETFRDFIVISAA 138

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
             D++     G    N+  ++ +R    +R  + + +    +   A P NA 
Sbjct: 139 WRDLIRARYNGRV--NITDEEVERALGSSRGNNGLRVLLSEIIIPAPPQNAD 188


>gi|57234034|ref|YP_181920.1| protein export protein, putative [Dehalococcoides ethenogenes 195]
 gi|57224482|gb|AAW39539.1| protein export protein, putative [Dehalococcoides ethenogenes 195]
          Length = 421

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 58/423 (13%), Positives = 129/423 (30%), Gaps = 61/423 (14%)

Query: 6   RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSFINSW 60
           +K  +  +    L V+ +  ++ G+               + V++VG  K   S F+++ 
Sbjct: 24  QKKRQRIIFATGLSVIGIVLVLVGMGVYKGWYVDQYKPMHTVVLTVGDTKYNVSYFVDAL 83

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           K                +   +      + + +     + +   ++G       +   I 
Sbjct: 84  K-----------HFTGGDSTYAYYFIDAVAERIQLNQLIVEKAAEMGYTVSEDEIDASIE 132

Query: 121 RS-----PLFHGKDNKFSHDVFVSRLAREGINEK-----EYIDHYTKMLSRTDVVGMFVG 170
            +     P            + +S L  E  + +     E  +    +L         + 
Sbjct: 133 ENSLDDVPAVRDIV---RASLLISTLKTEYFDPQVPQNAEQREALAMLLESESAASEVLA 189

Query: 171 GMRPSNLLLDQAKRFYFE-NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
           G+        +A     E N   D   ++ R    I+    + + + +    D+Y     
Sbjct: 190 GITTDEEFAAKAAELSLESNTKTDEGTIDFRPANTISSLYGSEILEQYIFSTDSY----- 244

Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
               Y L    +  K+             +  E+           ++ P+Q+ A E    
Sbjct: 245 ---DYTLLQDADVSKQRA-------YWLIEVLERNADSGQIHALGMLLPSQEVALEVKAK 294

Query: 290 LKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFS-LAKKGDFTPVIHG 344
           L+ G+ +  LA E  +      +   +   S   +P+ ++AD IF+  A+       I  
Sbjct: 295 LEAGEDWGDLAVEYSQLANVEDNRGDMDWISSTSVPE-NVADIIFADDAELNTVLDPIQD 353

Query: 345 S-----FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
                  G  I  + ++  +      E+ +D    +   K  E   +      + L    
Sbjct: 354 DTNTTRGGCWIVRLKSVDENR-----ELSEDDRTLLINDKVDEWTTDLKNANLDRLTNTF 408

Query: 400 SMD 402
           S D
Sbjct: 409 SDD 411


>gi|22597180|gb|AAN03477.1| prolyl isomerase Ess1 [Cryptococcus neoformans var. neoformans]
          Length = 178

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 19/107 (17%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
           +I I++DE QA  E++           +  L      +  + F  +   +       +  
Sbjct: 87  RITITSDEAQAIIEQH-----------IAYLQSLPPADLPKEFAKIASTES------DCS 129

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            +     LG F +  +      D+ F+    G  + ++    G  + 
Sbjct: 130 SARKGGDLGWFGRGQMQKP-FEDATFN-TPVGQLSGIVKTDSGIHVI 174


>gi|327458681|gb|EGF05029.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis
           SK1057]
          Length = 335

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 69/165 (41%), Gaps = 18/165 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R + ++    +K  + E++++  +A +E       +PE+ T + +   ++ +  E  
Sbjct: 109 EQIRTNMLVEHAVKKAAEKELTDENYKAAFENY-----TPEV-TAQIIKVDSEDKGKEVL 162

Query: 288 QSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKG--DFT 339
           +  K  G  F Q+A+E     +    G   K       +PD ++  ++F+L + G  D  
Sbjct: 163 EKAKAEGADFSQIAKENSTDAATKEKGGEIKFDSGSTDVPD-AVKKAVFALEENGVSDLV 221

Query: 340 PVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            V    +   Y I  +   K   + ++++ K  +   +   K  +
Sbjct: 222 TVPDSQYSASYYIVKLVK-KSEKSSNWKDYKDKLKKIIIAQKEKD 265


>gi|20806943|ref|NP_622114.1| hypothetical protein TTE0434 [Thermoanaerobacter tengcongensis MB4]
 gi|20515421|gb|AAM23718.1| hypothetical protein TTE0434 [Thermoanaerobacter tengcongensis MB4]
          Length = 241

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/198 (11%), Positives = 54/198 (27%), Gaps = 31/198 (15%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           V+    +  V    +  + F               G  + S+  +   ++  +L+ LV  
Sbjct: 61  VNEGDIIAEVNGIPIYKNEFELRK-----------GLTLASDE-QINDINNFVLNKLVRE 108

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY- 155
              +       L+     +   I +      K+   +       ++  G+  +EY + Y 
Sbjct: 109 KVKEYLAMKYNLKVSEDEINSYIEKEKQ-QFKEFPEAEKKLKELISASGMTYEEYWNDYE 167

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
              + R  +       +    +   + K+       V                      +
Sbjct: 168 RYNVKRMLLFDKLYNAIVDEGIKNGELKKTDKMTIEVQ-----------------NEYKK 210

Query: 216 WFEKYKDNYRAPEYKRIS 233
           +F+   D Y       I+
Sbjct: 211 YFDNIIDQYVKQAKISIN 228


>gi|254426795|ref|ZP_05040502.1| hypothetical protein ADG881_25 [Alcanivorax sp. DG881]
 gi|196192964|gb|EDX87923.1| hypothetical protein ADG881_25 [Alcanivorax sp. DG881]
          Length = 455

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 59/181 (32%), Gaps = 25/181 (13%)

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL---KKGK 294
           +   +    E+S D++ A Y+++++++   E      L   +Q EAD  +  L   +K +
Sbjct: 266 NPQLRALAAEVSQDQIAAYYQQHQDEFTRVERVHAYHLRVNSQAEADRIYAELLDVQKAQ 325

Query: 295 K------------FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
           K            F         +       +LG   ++   D     ++  +      +
Sbjct: 326 KAQKADSGDPAIAFADAVARYSVADDREQGGALGWIDRDSRED-HWTQALAFVQPVQRVS 384

Query: 340 PVIHGSFG-----YVIAHVSNIKPS-FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           P            + +  V   +    +V  + V+   A  +   +  ++ +       E
Sbjct: 385 PPFRSPATDSAPYWELLWVDQKEMGYQSVDSESVRYRAAQAIAREQMQQRFQTLLADATE 444

Query: 394 F 394
            
Sbjct: 445 A 445


>gi|119487787|ref|ZP_01621296.1| hypothetical protein L8106_29935 [Lyngbya sp. PCC 8106]
 gi|119455620|gb|EAW36757.1| hypothetical protein L8106_29935 [Lyngbya sp. PCC 8106]
          Length = 247

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDI 310
           E++  + +N+  Y   E   + Q++ P ++ A E F  +++ +  F   A          
Sbjct: 107 EVEKYFAQNRLDY---EQVLLYQIIVPYERLARELFYQIEEEEISFYHAAHLYDIEKKRR 163

Query: 311 SL----GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
            L    G  ++ ++    +A  +F  A  G+         GY +  V    P+     +E
Sbjct: 164 ELCGYEGQLNRRHL-KADIAALVFG-ATPGEIIGPHQTDLGYHLFKVEEFIPAELT--EE 219

Query: 367 VKKDIANQMRIT 378
             + I  ++   
Sbjct: 220 YSQKIIQKLFKE 231


>gi|32266195|ref|NP_860227.1| hypothetical protein HH0696 [Helicobacter hepaticus ATCC 51449]
 gi|32262245|gb|AAP77293.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 264

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 68/172 (39%), Gaps = 15/172 (8%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEIS-NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
             YR    K++             I IS  DEL   Y ++K+++  P    V +      
Sbjct: 95  QEYRTQIKKQLQTKELMQRILASNISISSEDELLTYYTRHKKEFLIPSQVRVVRYFSQTD 154

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
              +   ++++  K+ I+  ++  ++++  SL         +  +A  +F      +FTP
Sbjct: 155 ---NALQKAIQSPKQNIKGVQKVNETIALSSL---------NPQIAQ-VFIHTPNNEFTP 201

Query: 341 VIHGS-FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
           V+     G+V   V        ++F+E K  I  ++   K    + E + ++
Sbjct: 202 VLTTGGNGFVSFLVKERLGETPINFEEAKPLINQKIMAQKEQSIIAEHFNKI 253



 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 53/170 (31%), Gaps = 38/170 (22%)

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
            +  +D L++    D  IE   +  +  ++  EIA                         
Sbjct: 37  KQAAIDMLINERLKDDEIERFKISIEDFKIDEEIALLAA------------------NAN 78

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           +++ E++   T  +S  +        ++   L+         +      I ++       
Sbjct: 79  LSKDEFLRKATHTMSLQEYRTQIKKQLQTKELM---------QRILASNISIS------- 122

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEY-KRISYILFDVHEKEKKIEISNDELQ 254
              S   L  ++ ++K  +  P   + + Y     +  +K I+     ++
Sbjct: 123 ---SEDELLTYYTRHKKEFLIPSQVRVVRYFSQTDNALQKAIQSPKQNIK 169


>gi|195995537|ref|XP_002107637.1| hypothetical protein TRIADDRAFT_51343 [Trichoplax adhaerens]
 gi|190588413|gb|EDV28435.1| hypothetical protein TRIADDRAFT_51343 [Trichoplax adhaerens]
          Length = 7662

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 48/457 (10%), Positives = 129/457 (28%), Gaps = 68/457 (14%)

Query: 53   FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
                 +  ++      Q++      E  + +   +   D L +        +        
Sbjct: 7026 RDQLNSKLEERRRRKQQQLARKQEIEMQKKLLQQQAEADRLNAER----EAKKE-----D 7076

Query: 113  GRVWGEIARSPLFHGKDNKFSHDVFVSRL----AREGINEK-EYIDHYTKMLSRT----- 162
              +   I         DN+       + +     +    E  ++ +   K L+       
Sbjct: 7077 AALAETIKE---LKNSDNENESKRAENLIYHVMQQRHAKETLQHEEQLKKELATALAEAQ 7133

Query: 163  --------------------DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
                                 +  +       S L L   +R     +       +    
Sbjct: 7134 NNVATKCQDNRDKLVEQHEHQLAELLAHSDGISPLELKSRQRALEGKQQTQLAEFDKDAA 7193

Query: 203  PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
              + + +  V+     ++ +   A + K+++ +   + E   +      EL AEY     
Sbjct: 7194 TKMQEAAKDVMFNLQIQHANARLALKTKQLAELSSSMQELAGQ-----RELIAEYTDRTN 7248

Query: 263  KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG--KKFIQLAEEQGKSLSDISLGSFSKEYI 320
            +      +  E+++   + + ++     +K   K+  +LA++      ++ L     E  
Sbjct: 7249 EATRTAQQDREKIMKEMEAKLEKIKAEKRKAQEKQRAELAQQLEALQDELQLEQSKDEQY 7308

Query: 321  PDVSLADSIF----SLAKKGDF--TPVIHGSFG---------YVIAHVSNIKPSFTVSFQ 365
             +  +A+          KK +   + +                    ++ ++ +     +
Sbjct: 7309 LEEQIAEREKVHEEQRKKKDELMKSKIEKEDLNEDEKQKLIEQHQRDLAELEIAQQRERE 7368

Query: 366  EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
            + +  +  ++   +  +K +    +LE+         E   R +I +I    +       
Sbjct: 7369 KSRGALKRKL-EERRKKKYQAAVNQLEKITEDDEEATEEEERAQIRAIQQDNIQKLETTA 7427

Query: 426  KGKEVAAIPYKEQL---LFRVFGKDDPLSKDHTVALP 459
               E    P  E     L  V   D  ++ D  V   
Sbjct: 7428 SKLETPNAPIHEPQTVDLAEVVQPDGIVTADSHVPTA 7464


>gi|325694026|gb|EGD35944.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis SK150]
          Length = 335

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R + ++    +K  + E++++  +A +E       +PE+ T + +   ++ +  E  
Sbjct: 109 EQIRTNMLVEHAVKKAAEKELTDENYKAAFENY-----TPEV-TAQIIKVDSEDKGKEVL 162

Query: 288 QSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKG--DFT 339
           +  K  G  F Q+A+E     +    G   K       +PD ++  + F+L + G  D  
Sbjct: 163 EKAKAEGADFSQIAKENSTDAATKEKGGEIKFDSGSTDVPD-AVKKAAFALEENGVSDLV 221

Query: 340 PVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            V    +   Y I  +   K   + ++++ K  +   +   K  +
Sbjct: 222 TVPDSQYSASYYIVKLVK-KSEKSSNWKDYKDKLKKIIIAQKEKD 265


>gi|255082788|ref|XP_002504380.1| peptidyl-prolyl cis-trans isomerase [Micromonas sp. RCC299]
 gi|226519648|gb|ACO65638.1| peptidyl-prolyl cis-trans isomerase [Micromonas sp. RCC299]
          Length = 196

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 16/139 (11%)

Query: 269 IRTVEQLVFPNQKEA--DEAFQSLKKG-KKFIQLAEEQGKSLSD---ISLGSFSKEYIPD 322
              V  ++   + E   DE  + +  G   F +LA    K  S     +LG  S+     
Sbjct: 1   QVKVAHILVEPKDEPLLDELGEQIAAGVATFAELAATHSKCPSGKQGGALGWISRGQTVG 60

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN-------IKPSFTVSFQEVKKDIANQM 375
                + F+    G  +     SFG  +  V +       I        QEV +   +++
Sbjct: 61  -EFERAAFT-TPVGGTSK-ATTSFGVHLIEVLDARANAPTIVDVSIQDLQEVLEGDLDEV 117

Query: 376 RITKASEKVKEDYKRLEEF 394
            +    E+ + D  R+E F
Sbjct: 118 NLIDVREQNEWDAARIEAF 136


>gi|328945498|gb|EGG39649.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis
           SK1087]
          Length = 335

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R + ++    +K  + E++++  +A +E       +PE+ T + +   ++ +  E  
Sbjct: 109 EQIRTNMLVEHAVKKAAEKELTDENYKAAFENY-----TPEV-TAQIIKVDSEDKGKEVL 162

Query: 288 QSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKG--DFT 339
           +  K  G  F Q+A+E     +    G   K       +PD ++  + F+L + G  D  
Sbjct: 163 EKAKAEGADFSQIAKENSTDATTKEKGGEIKFDSGSTDVPD-AVKKAAFALEENGVSDLV 221

Query: 340 PVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            V    +   Y I  +   K   + ++++ K  +   +   K  +
Sbjct: 222 TVPDSQYSASYYIVKLVK-KSEKSSNWKDYKDKLKKIIIAQKEKD 265


>gi|327489451|gb|EGF21244.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis
           SK1058]
          Length = 335

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R + ++    +K  + E++++  +A +E       +PE+ T + +   ++ +  E  
Sbjct: 109 EQIRTNMLVEHAVKKAAEKELTDENYKAAFENY-----TPEV-TAQIIKVDSEDKGKEVL 162

Query: 288 QSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKG--DFT 339
           +  K  G  F Q+A+E     +    G   K       +PD ++  + F+L + G  D  
Sbjct: 163 EKAKAEGADFSQIAKENSTDAATKEKGGEIKFDSGSTDVPD-AVKKAAFALEENGVSDLV 221

Query: 340 PVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            V    +   Y I  +   K   + ++++ K  +   +   K  +
Sbjct: 222 TVPDSQYSASYYIVKLVK-KSEKSSNWKDYKDKLKKIIIAQKEKD 265


>gi|327461592|gb|EGF07923.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis SK1]
          Length = 335

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R + ++    +K  + E++++  +A +E       +PE+ T + +   ++ +  E  
Sbjct: 109 EQIRTNMLVEHAVKKAAEKELTDENYKAAFENY-----TPEV-TAQIIKVDSEDKGKEVL 162

Query: 288 QSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKG--DFT 339
           +  K  G  F Q+A+E     +    G   K       +PD ++  + F+L + G  D  
Sbjct: 163 EKAKAEGADFSQIAKENSTDAATKEKGGEIKFDSGSTDVPD-AVKKAAFALEENGVSDLV 221

Query: 340 PVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            V    +   Y I  +   K   + ++++ K  +   +   K  +
Sbjct: 222 TVPDSQYSASYYIVKLVK-KSEKSSNWKDYKDKLKKIIIAQKEKD 265


>gi|324990576|gb|EGC22512.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis SK353]
          Length = 335

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R + ++    +K  + E++++  +A +E       +PE+ T + +   ++ +  E  
Sbjct: 109 EQIRTNMLVEHAVKKAAEKELTDENYKAAFENY-----TPEV-TAQIIKVDSEDKGKEVL 162

Query: 288 QSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKG--DFT 339
           +  K  G  F Q+A+E     +    G   K       +PD ++  + F+L + G  D  
Sbjct: 163 EKAKAEGADFSQIAKENSTDAATKEKGGEIKFDSGSTDVPD-AVKKAAFALEENGVSDLV 221

Query: 340 PVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            V    +   Y I  +   K   + ++++ K  +   +   K  +
Sbjct: 222 TVPDSQYSASYYIVKLVK-KSEKSSNWKDYKDKLKKIIIAQKEKD 265


>gi|323352648|ref|ZP_08087618.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis VMC66]
 gi|322121684|gb|EFX93430.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis VMC66]
 gi|324995374|gb|EGC27286.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis SK678]
 gi|327468937|gb|EGF14409.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis SK330]
 gi|327473316|gb|EGF18736.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis SK408]
          Length = 335

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R + ++    +K  + E++++  +A +E       +PE+ T + +   ++ +  E  
Sbjct: 109 EQIRTNMLVEHAVKKAAEKELTDENYKAAFENY-----TPEV-TAQIIKVDSEDKGKEVL 162

Query: 288 QSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKG--DFT 339
           +  K  G  F Q+A+E     +    G   K       +PD ++  + F+L + G  D  
Sbjct: 163 EKAKAEGADFSQIAKENSTDAATKEKGGEIKFDSGSTDVPD-AVKKAAFALEENGVSDLV 221

Query: 340 PVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            V    +   Y I  +   K   + ++++ K  +   +   K  +
Sbjct: 222 TVPDSQYSASYYIVKLVK-KSEKSSNWKDYKDKLKKIIIAQKEKD 265


>gi|332365984|gb|EGJ43740.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis
           SK1059]
          Length = 335

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R + ++    +K  + E++++  +A +E       +PE+ T + +   ++ +  E  
Sbjct: 109 EQIRTNMLVEHAVKKAAEKELTDENYKAAFENY-----TPEV-TAQIIKVDSEDKGKEVL 162

Query: 288 QSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKG--DFT 339
           +  K  G  F Q+A+E     +    G   K       +PD ++  + F+L + G  D  
Sbjct: 163 EKAKAEGADFSQIAKENSTDAATKEKGGEIKFDSGSTDVPD-AVKKAAFALEENGVSDLV 221

Query: 340 PVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            V    +   Y I  +   K   + ++++ K  +   +   K  +
Sbjct: 222 TVPDSQYSASYYIVKLVK-KSEKSSNWKDYKDKLKKIIIAQKEKD 265


>gi|325688313|gb|EGD30332.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis SK72]
          Length = 335

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R + ++    +K  + E++++  +A +E       +PE+ T + +   ++ +  E  
Sbjct: 109 EQIRTNMLVEHAVKKAAEKELTDENYKAAFENY-----TPEV-TAQIIKVDSEDKGKEVL 162

Query: 288 QSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKG--DFT 339
           +  K  G  F Q+A+E     +    G   K       +PD ++  + F+L + G  D  
Sbjct: 163 EKAKAEGADFSQIAKENSTDAATKEKGGEIKFDSGSTDVPD-AVKKAAFALEENGVSDLV 221

Query: 340 PVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            V    +   Y I  +   K   + ++++ K  +   +   K  +
Sbjct: 222 TVPDSQYSASYYIVKLVK-KSEKSSNWKDYKDKLKKIIIAQKEKD 265


>gi|167766180|ref|ZP_02438233.1| hypothetical protein CLOSS21_00674 [Clostridium sp. SS2/1]
 gi|167712260|gb|EDS22839.1| hypothetical protein CLOSS21_00674 [Clostridium sp. SS2/1]
 gi|291560116|emb|CBL38916.1| PPIC-type PPIASE domain [butyrate-producing bacterium SSC/2]
          Length = 369

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 74/195 (37%), Gaps = 22/195 (11%)

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ--AEY 257
           + V    +    ++ + +E+            I+  +     K+  + +++DE +    Y
Sbjct: 136 KKVMKKTEADKDMIQKLYEE----------STIASKVMQAIIKKANVTVTDDEAKTVKVY 185

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKE-----ADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           +       +      E+ +   +K+     A  A + +KKG+    +A++   +  +   
Sbjct: 186 KLVFTTKTTDSKTGKEKDMTAAEKKDQLKKAKSALKMIKKGQSISSVAKKFSVNSDNEE- 244

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
            S++K      +  ++  +  KK   + V+     YVI  +    P+ T +    K  + 
Sbjct: 245 -SYTKGKAALGTKFETAAAKLKKNQVSGVVELDDAYVIIKML--NPNDTTAAASNKSTLL 301

Query: 373 NQMRITKASEKVKED 387
            + +   A EKV + 
Sbjct: 302 QE-KQQAAYEKVYKK 315


>gi|163735798|ref|ZP_02143227.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter
           litoralis Och 149]
 gi|161390884|gb|EDQ15224.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter
           litoralis Och 149]
          Length = 415

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 23/169 (13%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
            + +V     F +   + +LFS      V+ V    +    F    +Q+  ++    G  
Sbjct: 18  TVLMVCATCSFAVPLGAQSLFS-----PVIEVNDGVIT--EFEIEQRQQFLILLNAPGSS 70

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
                       + +++ L++     Q + + GLE     +         F G+ N    
Sbjct: 71  -----------RQAVIEELINERLRAQAVANAGLELSDAAMQD---GMIEFAGRVN-LGV 115

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLS-RTDVVGMFVGGMRPSNLLLDQA 182
           D F + L   GI    + D     +S R  +   F   ++ S   +DQA
Sbjct: 116 DEFKTVLEENGIAATTFEDFVRVGVSWRDFIAARFGPRLQVSEEEIDQA 164


>gi|318061914|ref|ZP_07980635.1| lipoprotein [Streptomyces sp. SA3_actG]
          Length = 255

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 45/163 (27%), Gaps = 8/163 (4%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR--SVGLDKKILDN 92
              +       VG  ++  +   +   +    + +       SER    S  L +  L  
Sbjct: 45  GGTAHPGAAAVVGNTRITEAQLQHRVGELHDAVRELSSDAQTSERIISGSGSLARPTLQG 104

Query: 93  LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
           +V    + +   D G+      V    A+         +    V    L R G+      
Sbjct: 105 MVRDRVVARAAADKGVTVSRAEVQSARAQLT--QQAGGEQGLKV--EWLTRYGVPPSRLD 160

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSN--LLLDQAKRFYFENRSVD 193
           D   + ++   +           +    +D+      +   VD
Sbjct: 161 DALRENIAEQKLYAALGADPSSPDGKATVDKTLAATAKKLKVD 203


>gi|326435255|gb|EGD80825.1| peptidyl-prolyl cis-trans isomerase pin1 [Salpingoeca sp. ATCC
           50818]
          Length = 115

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 275 LVFPNQKEADEAFQ----SLKKGK-KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLA 326
           +    +++AD+  +     ++ G+  F  +A    + G +    ++G F++E I      
Sbjct: 29  IRSRTKEQADDMLREFKRQIEAGEKSFEDIARVESDCGSAAQGGNIGEFTQEEIQAPFFE 88

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAH 352
              F   K G+ + V+H   G  I  
Sbjct: 89  --AFIKLKPGEMSDVVHTDSGSHIIK 112


>gi|242020772|ref|XP_002430825.1| laminin A chain, putative [Pediculus humanus corporis]
 gi|212516028|gb|EEB18087.1| laminin A chain, putative [Pediculus humanus corporis]
          Length = 1616

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/398 (12%), Positives = 118/398 (29%), Gaps = 52/398 (13%)

Query: 46   VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
            V RQ+       N +K E+G +  ++  +  +        D+  L+ L     + Q I D
Sbjct: 1223 VKRQRNTTDELEN-FKSEIGRMEDRVNAIKAAAEDAQNSADQAQLEAL----GVYQEIYD 1277

Query: 106  IGL-EADHGRVWGE----IARSPLFHGK--DNKFSH-DVFVSRLAREGINEKEYIDHYTK 157
            + L E    ++  E    I  +     +  D    H + +   L +  I E +++    +
Sbjct: 1278 LQLPEIKAEKLKEESEFLINSARKIKKEAEDLILDHTETWEELLKQ--IQESQFL--LEQ 1333

Query: 158  MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN--RSVDYIVLNNRHVPAIADPSNAVLT- 214
               + +V    +     +     +A +   +    + D   +         + S      
Sbjct: 1334 GEEQQNVANDLLANADVARNKAKEAVKLGEQTIKEAQDTFTI-LTDFEKKVEDSKDKAQE 1392

Query: 215  --QWFEK--YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
                 +      +  A + +     L    +  +       E Q++Y +   K      R
Sbjct: 1393 ALAMVDDIVNMIDLAANKTREAEAALQGAEKNAQIARDVAKEAQSKYAEEASKEAHDIKR 1452

Query: 271  TVEQLVFPNQKEADEAFQSL------------------KKGKKFIQLAEEQGKSLSDISL 312
              E      +K+A                         +K +    L  E  K +    +
Sbjct: 1453 EAE----ETKKKAGRLRDEADNLSGRVAVTESRLKKLEEKAELDEALTAEAKKKVGQTKI 1508

Query: 313  GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                       +LAD    L +  D + V   S   +   +   +            ++ 
Sbjct: 1509 SVNEASKQVQKALADVNDILGELQDLSDVDENSLNDLERRLDEAEEEV---LDSKLDEMM 1565

Query: 373  NQMRITK--ASEKVKEDYKRLEEFLALGTSMDEISRRE 408
              ++  K   S+ + +    ++       ++++I+   
Sbjct: 1566 QFLKEEKMSQSQLMGQYQDEVDRLREEVANIEKIAGSL 1603


>gi|332363042|gb|EGJ40829.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis SK355]
          Length = 335

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R + ++    +K  + E++++  +A +E       +PE+ T + +   ++ +  E  
Sbjct: 109 EQIRTNMLVEYAVKKAAEKELTDENYKAAFENY-----TPEV-TAQIIKVASEDKGKEVL 162

Query: 288 QSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKG--DFT 339
           +  K  G  F Q+A+E     +    G   K       +PD ++  + F+L + G  D  
Sbjct: 163 EKAKAEGADFSQIAKENSTDAATKEKGGEIKFDSGSTDVPD-AVKKAAFALEENGVSDLV 221

Query: 340 PVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            V    +   Y I  +   K   + ++++ K  +   +   K  +
Sbjct: 222 TVPDSQYSASYYIVKLVK-KSEKSSNWKDYKDKLKKIIIAQKEKD 265


>gi|330937806|ref|XP_003305631.1| hypothetical protein PTT_18538 [Pyrenophora teres f. teres 0-1]
 gi|311317253|gb|EFQ86277.1| hypothetical protein PTT_18538 [Pyrenophora teres f. teres 0-1]
          Length = 191

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 291 KKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
              K   +LA    +   +     LG F K  +       + F+L +KG  + ++  + G
Sbjct: 126 ANAKSLSELATTESDCSSARKGGDLGFFGKGDM-QKEFEQAAFAL-EKGQVSDMVETASG 183

Query: 348 YVIAH 352
             +  
Sbjct: 184 VHLIQ 188


>gi|307706477|ref|ZP_07643286.1| foldase protein prsA [Streptococcus mitis SK321]
 gi|307618187|gb|EFN97345.1| foldase protein prsA [Streptococcus mitis SK321]
          Length = 312

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 19/188 (10%)

Query: 211 AVLTQWFEKYK----DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
               Q+ E Y+          E ++       + E   K     +     Y+K  ++Y  
Sbjct: 85  EEEKQYGENYQRVLSQAGMTLETRKAQIRTSKLVELAVKKAAEAELTDDAYKKAFDEYTP 144

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKS----LSDISLGSFSKEYIP 321
               T + +   N+ +A E  +  K  G  F QLA++         +   +   S     
Sbjct: 145 D--VTAQIIRLDNEDKAKEILEKAKASGADFTQLAKDNSTDEKTKANGGEITFDSASTEV 202

Query: 322 DVSLADSIFSLAKKGDFTPVIH------GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
              +  + F+L   G  + VI        S  Y I  +       T +  + K+ +   +
Sbjct: 203 PDQVKKAAFALDVNG-ISDVITATGTQAYSSQYYIVKLIKKTE-KTSNIDDYKEKLKTVI 260

Query: 376 RITKASEK 383
              K ++ 
Sbjct: 261 LTQKQNDA 268


>gi|149197539|ref|ZP_01874590.1| hypothetical protein LNTAR_01120 [Lentisphaera araneosa HTCC2155]
 gi|149139557|gb|EDM27959.1| hypothetical protein LNTAR_01120 [Lentisphaera araneosa HTCC2155]
          Length = 317

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 90/268 (33%), Gaps = 33/268 (12%)

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR---HVPAIA 206
           +Y D          ++  ++     +       K F   +    Y            A  
Sbjct: 43  QYDDIQYDKNQSLQIIKQYLAYYVGAPSDAQTVKSFIRNSLE-QYFSFKALYELSRNAGC 101

Query: 207 DPSNAVLTQWFEKYKD--------------NYRAPEYKRISYILFDVHEKEKKIE----I 248
                   ++++ Y +              N    E  RI Y    V    KK+     I
Sbjct: 102 AADMDEARKFYDAYSNRLSLSKLIEELSVLNLSKEEIIRIIYEKQSVQNYRKKLFKNYLI 161

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ---KEADEAFQSLKKGKKFIQLAEEQGK 305
              E    Y +NK  +              N     +     + L +G  F ++ +++G 
Sbjct: 162 GEAEAMLYYHENKNTFTQAAGLKFNSYKIENALTSSDVQSINRLLAQGLSFEKILQQKG- 220

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFS-LAKKGDFTPVI--HGSFGYVIAHVSNIKPSFTV 362
               IS     +++I +  L +S F+ +        +   +   G ++   ++   +  +
Sbjct: 221 ----ISFTPLPEQFISETKLHESDFAVMRGDAQIHQIYMINSPIGPLLCKPTSKVDAKLL 276

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390
           +F++VK+ I N ++  + ++++K + K+
Sbjct: 277 AFEKVKEKIINSLKSHQVNKQLKIEIKQ 304


>gi|162450295|ref|YP_001612662.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Sorangium
           cellulosum 'So ce 56']
 gi|161160877|emb|CAN92182.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Sorangium
           cellulosum 'So ce 56']
          Length = 239

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 7/79 (8%)

Query: 278 PNQKEADEAFQSLKKGKK-FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSL 332
             +  A EA    K     F  + +E     G       LG F K  +       +    
Sbjct: 159 EAKARATEAMTKAKADPSKFTDVVKEYSDEPGADKRGGDLGKFPKGAMV-PEF-QAGLEK 216

Query: 333 AKKGDFTPVIHGSFGYVIA 351
            K G  + ++   FGY + 
Sbjct: 217 IKVGQVSDLVETPFGYHVI 235


>gi|307708615|ref|ZP_07645079.1| foldase protein PrsA [Streptococcus mitis NCTC 12261]
 gi|307615364|gb|EFN94573.1| foldase protein PrsA [Streptococcus mitis NCTC 12261]
          Length = 312

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 17/187 (9%)

Query: 211 AVLTQWFEKYK----DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
               Q+ E Y+          E ++       + E   K     +     Y+K  ++Y  
Sbjct: 85  EEEKQYGENYQRVLSQAGMTLETRKAQIRTSKLVELAVKKAAEAELTDDAYKKAYDEYTP 144

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKS----LSDISLGSFSKEYIP 321
               T + +   N+ +A E  +  K     F QLA++         +   +   S     
Sbjct: 145 D--VTAQIIRLDNEDKAKEVLEKAKASDADFAQLAKDNSTDEKTKANGGEITFDSASTEV 202

Query: 322 DVSLADSIFSLAKKGD-----FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
              +  + F+L   G       T     S  Y I  +       + +  + K+ +   + 
Sbjct: 203 PDQVKKAAFALDVNGVSDVISVTGTQAYSSQYYIVKLIKKTE-KSSNIDDYKEKLKTVIL 261

Query: 377 ITKASEK 383
             K ++ 
Sbjct: 262 TQKQNDA 268


>gi|317499344|ref|ZP_07957614.1| hypothetical protein HMPREF0996_02598 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893379|gb|EFV15591.1| hypothetical protein HMPREF0996_02598 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 369

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 74/195 (37%), Gaps = 22/195 (11%)

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ--AEY 257
           + V    +    ++ + +E+            I+  +     K+  + +++DE +    Y
Sbjct: 136 KKVMKKTEADKDMIQKLYEE----------STIASKVMQAIIKKANVTVTDDEAKTVKVY 185

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKE-----ADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           +       +      E+ +   +K+     A  A + +KKG+    +A++   +  +   
Sbjct: 186 KLVFTTKTTDSKTGKEKDMTAAEKKDQLKKAKSALKMIKKGQSISSVAKKFSVNSDNEE- 244

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
            S++K      +  ++  +  KK   + V+     YVI  +    P+ T +    K  + 
Sbjct: 245 -SYTKGKATLGTKFETAAAKLKKNQVSGVVELDDAYVIIKML--NPNDTTAAASNKSTLL 301

Query: 373 NQMRITKASEKVKED 387
            + +   A EKV + 
Sbjct: 302 QE-KQQAAYEKVYKK 315


>gi|325568277|ref|ZP_08144644.1| peptidyl-prolyl cis-trans isomerase [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158046|gb|EGC70199.1| peptidyl-prolyl cis-trans isomerase [Enterococcus casseliflavus
           ATCC 12755]
          Length = 344

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/322 (11%), Positives = 95/322 (29%), Gaps = 36/322 (11%)

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
            ++  M  G +   +           +    + IVL   +     D +  ++ + F    
Sbjct: 26  EEIATMKGGKITVQDFYDKAKTSTENQQALREMIVLKVFNEKYGDDVTEEMIDEQFNNVA 85

Query: 222 DNY---------------RAPEYK-RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
           + Y                   Y+  +   L      +  ++I++++++  ++       
Sbjct: 86  EQYGGSDSFESTLTASGYTVKSYRAELKQQLALREGLKANMDITDEDMKTAWDSFHP--- 142

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLSDISLGSFSK----EYI 320
                  + +   ++ +A +  +  KK    F ++A+E+    +    G   K       
Sbjct: 143 ---EVEAQIIKVASEDDAKDVLEEAKKDDADFGEIAKEKSTDAATKEDGGTIKFDSTSSA 199

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFG------YVIAHVSNIKPSFTVSFQEVKKDIANQ 374
               +  + F L K G+ + VI  +        Y I  +   +        + K ++   
Sbjct: 200 VPSEVKTAAFDL-KDGEISEVISATNTSTYTTEYYIVKMVKNQDKGN-DMDKYKDELTEI 257

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS-IDLPLVDFAGKDVKGKEVAAI 433
            + T  ++         +E  A    M +    + +   I     + +  D    +    
Sbjct: 258 AQNTLLNDSTFMVATIGQELQAANVKMKDSDLADLLSDYITAAETEDSTADSSANDATDS 317

Query: 434 PYKEQLLFRVFGKDDPLSKDHT 455
              +             S+  T
Sbjct: 318 SAADSSATDATDDSTATSESAT 339


>gi|113868643|ref|YP_727132.1| parvulin-like peptidyl-prolyl isomerase [Ralstonia eutropha H16]
 gi|113527419|emb|CAJ93764.1| Parvulin-like peptidyl-prolyl isomerase [Ralstonia eutropha H16]
          Length = 250

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 13/147 (8%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSL 307
           S   +QA +  N  ++ S E   V  +V  ++ +A E    L+     F ++A E   + 
Sbjct: 108 SEAAVQAYFALNSPRFDSIE---VSHIVVDSEGKAKELISYLQDDPDAFAEMAREHSIAD 164

Query: 308 S---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTV 362
           +      +G   +  +    +   +F+ A+ GD       +    + +  V    P+   
Sbjct: 165 TRERGGEIGKVLRGSL-KTDIEAKVFN-AEPGDLLGPFPSADRSFFEVFLVREKHPATLD 222

Query: 363 S--FQEVKKDIANQMRITKASEKVKED 387
           S    EV++ +     + +A E V E 
Sbjct: 223 SEVAVEVRRLLREDWLMARAQEHVIEA 249


>gi|325690093|gb|EGD32097.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis SK115]
          Length = 335

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R + ++    +K  + E++++  +A +E       +PE+ T + +   ++ +  E  
Sbjct: 109 EQIRTNMLVEYAVKKAAEKELTDENYKAAFENY-----TPEV-TAQIIKVDSEDKGKEVL 162

Query: 288 QSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKG--DFT 339
           +  K  G  F Q+A+E     +    G   K       +PD ++  + F+L + G  D  
Sbjct: 163 EKAKAEGADFSQIAKENSTDAATKEKGGEIKFDSGSTDVPD-AVKKAAFALEENGVSDLV 221

Query: 340 PVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            V    +   Y I  +   K   + ++++ K  +   +   K  +
Sbjct: 222 TVPDSQYSASYYIVKLVK-KSEKSSNWKDYKDKLKKIIIAQKEKD 265


>gi|299470724|emb|CBN79770.1| peptidyl-prolyl cis-trans isomerase C [Ectocarpus siliculosus]
          Length = 184

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 14/122 (11%)

Query: 262 EKYFSPEIRTVEQLVFPNQKEA-----DEAFQSLKKGKK-FIQLAEEQG---KSLSDISL 312
           EK   P    V  ++   + E      +EA + +      F ++AE+      +     L
Sbjct: 55  EKMSDPRYARVRHILVEEKGEEGRSKLEEAKEEIAGDLDKFSEVAEKMSTCTSAPRGGRL 114

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV---SFQEVKK 369
              ++         D  F+  + G     +   FG  + +V +           F ++  
Sbjct: 115 KLLARGETV-PEFDDIAFN-GELGVVHGPVETQFGTHLIYVESCNKPQNTWKMLFDDIVD 172

Query: 370 DI 371
            +
Sbjct: 173 KV 174


>gi|168703951|ref|ZP_02736228.1| probable peptidyl-prolyl cis-trans isomerase [Gemmata obscuriglobus
           UQM 2246]
          Length = 374

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 63/168 (37%), Gaps = 15/168 (8%)

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL----K 291
           L      + ++++S++++Q  +E           R   +++  N+ +   A +      K
Sbjct: 169 LLLTKMCQSRVQVSDEDIQKTFENRFG------ERRAAKIITWNENDFRTAQKQWDEARK 222

Query: 292 KGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
               F ++A    +   + +   +    K    +           + G+ + +     G+
Sbjct: 223 SDNDFDRIARMQADPTLAAAGGQVRPIGKHSETENDAVHKELHKLQPGELSAIFKVPSGF 282

Query: 349 VIAH-VSNIKPSFTVSFQE-VKKDIANQMRITKASEKVKEDYKRLEEF 394
           +    V+ + P   V   E +K+ +  +M   +   ++ + +K L++ 
Sbjct: 283 MCIKYVAPVPPEANVKLDEKMKEALRKEMFTQRLEREIPKCFKELKDA 330


>gi|169836433|ref|ZP_02869621.1| hypothetical protein cdivTM_04910 [candidate division TM7
           single-cell isolate TM7a]
          Length = 185

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 12/160 (7%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQL 275
           + + +D     E    S  L   +E   K+ ++++E +  Y+ N   +   E    ++ +
Sbjct: 30  YTENQD--VIKEQLLASLTLV--NEVNGKVNVTDEEAKKYYDANPAAFTLQEDTAKLQII 85

Query: 276 VFPNQKEADE---AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSI 329
            F     A         L     F   A +   ++  +     +   IP+    +L  +I
Sbjct: 86  AFKATDSATASQVLKDVLANPNNFTTYARKYNANIPGVPENGET-SEIPESRLGALGTAI 144

Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
            ++A       V+       I  V        + F++++K
Sbjct: 145 KNVAAGQIVNSVVKVDNALYIVRVLEKNSKGVIPFEKLRK 184


>gi|125717603|ref|YP_001034736.1| foldase protein PrsA [Streptococcus sanguinis SK36]
 gi|189037919|sp|A3CLY1|PRSA_STRSV RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|125497520|gb|ABN44186.1| Foldase protein prsA precursor, putative [Streptococcus sanguinis
           SK36]
          Length = 335

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E  R + ++    +K  + E++++  ++ +E       +PE+ T + +   ++ +  E  
Sbjct: 109 EQIRTNMLVEYAVKKAAEKELTDENYKSAFENY-----TPEV-TAQIIKVDSEDKGKEVL 162

Query: 288 QSLKK-GKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKG--DFT 339
           +  K  G  F Q+A+E     +    G   K       +PD ++  + F+L + G  D  
Sbjct: 163 EKAKAEGADFSQIAKENSTDAATKEKGGEIKFDSGSTDVPD-AVKKAAFALEENGVSDLV 221

Query: 340 PVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            V    +   Y I  +   K   + ++++ K  +   +   K  +
Sbjct: 222 TVPDSQYSASYYIVKLVK-KSEKSSNWKDYKDKLKKIIIAQKEKD 265


>gi|323453183|gb|EGB09055.1| hypothetical protein AURANDRAFT_7806 [Aureococcus anophagefferens]
          Length = 111

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 14/101 (13%)

Query: 265 FSPEIRTVEQLVFPNQKEADEAF----QSLKKGKKFIQLAEEQ-------GKSLSDISLG 313
            +P  R   Q +   + EA +        +           +        G       LG
Sbjct: 13  RNPVSRRTNQRITMTKAEALDELEGWMAKISNAPDPAAAFRDACKKRSDCGSCRESGDLG 72

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV-IAHV 353
            F +  +      D+ F+LA  G+ + V+    G   I  +
Sbjct: 73  DFQRGQMQKP-FEDATFALA-VGEMSGVVDTDSGVHAILRL 111


>gi|313619302|gb|EFR91037.1| ABC transporter, permease protein [Listeria innocua FSL S4-378]
          Length = 1027

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 106/352 (30%), Gaps = 36/352 (10%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK----EKYFSPEIRTVEQLVF 277
            ++  PEY   +      +    K   S+  ++ E + NK         PE R + ++  
Sbjct: 95  QDFDLPEY---TIANLTFNNLADKEAFSDAYIRTEKKDNKKVEQALAGQPEKR-LNKIKT 150

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGK-SLSDISLG-SFSKEYIPDVSLADSIFSLAKK 335
             QK+ D+A   + KGK   +L + Q K   +   L   FSK      S    I    K+
Sbjct: 151 SEQKKLDDATAEINKGK--AELQKNQAKLDAAKAQLDEGFSKYNAAKASYDAKI----KQ 204

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-ANQMRITKASEKVKEDYKRLEEF 394
           G+                 +   +        KK + A +++I +  E + +  + L+E 
Sbjct: 205 GE-----------------SEIAAGEAELANAKKQLDAAKIQINQGEEAILQAERELKEG 247

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
           LA     + +         +              ++ A     + L   F          
Sbjct: 248 LAAWNEANNLLNTANGYLKNARSTLENALKQ--PDLTAFDIDRESLTNAFNMAASELDIS 305

Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
              L +       + +          E+   +    K V   E+    A  ++ E  ++ 
Sbjct: 306 AEELAEYEETINTLLDDYENGAISDAEIRGALNAALKQVAEGEKAYQSARTVLDEEKQKI 365

Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
           +       +    L       +        G + IS       +  +   +E
Sbjct: 366 EQGEKTLASKQQQLEQAKIAYQAGLAKYQAGQEKISLAKKQLADGKETGAVE 417


>gi|254456744|ref|ZP_05070172.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
 gi|207085536|gb|EDZ62820.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
          Length = 278

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 100/307 (32%), Gaps = 91/307 (29%)

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-G 145
           K   D L+  A  +Q I++  +    G V+ +I ++     + NK S   F   +    G
Sbjct: 48  KSATDALIRKALENQEIDERKISVSSGEVYDDIKKT----AERNKLSVSEFYEAVRNSSG 103

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           +  +E  +   + L    +                                        +
Sbjct: 104 LTSEELKEKIKEKLLSQKLYSAI--------------------------------AYSGV 131

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRI-SYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
           ++P+   +  +F+ +KD++  P   ++  Y   +  + ++KI+                +
Sbjct: 132 SEPTEDEIEAYFKSHKDSFAHPSGFKVLIYQSTNKQKLQEKID-------------NPMF 178

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
           +SP+I + EQ +                   + +++ E    L   SL SF+        
Sbjct: 179 YSPDISSNEQSL------------------PYDRISPELASLLERTSLNSFTAA------ 214

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
                           V  G  GY+  ++  I+ +       V+  I N +   +  + +
Sbjct: 215 ----------------VPDGKGGYMSFYIKEIESAKETGLDSVRNQIVNMITAEQREQVL 258

Query: 385 KEDYKRL 391
            + + RL
Sbjct: 259 GDYFARL 265


>gi|171463573|ref|YP_001797686.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193111|gb|ACB44072.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 142

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
            +  +K  ++  +L+A YE  K +Y   E   VE ++   + +A      +K G  F  +
Sbjct: 75  EDYVEKEGVAEADLKAAYESVKAQYTGKEY-HVEHILVEKEADAKAIIAQIKAGASFEDI 133

Query: 300 AEEQG 304
           A+ + 
Sbjct: 134 AKAKS 138


>gi|312217546|emb|CBX97494.1| hypothetical protein [Leptosphaeria maculans]
          Length = 258

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 292 KGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
             K   +LA    +   +     LG F +  +      ++ F L +KG  + ++  + G 
Sbjct: 123 NAKSLSELATTESDCSSARKGGDLGFFGRGDM-QREFEEAAFRL-EKGQVSEIVDTASGI 180

Query: 349 VIAH 352
            +  
Sbjct: 181 HLIQ 184


>gi|293556524|ref|ZP_06675096.1| foldase protein PrsA [Enterococcus faecium E1039]
 gi|291601330|gb|EFF31610.1| foldase protein PrsA [Enterococcus faecium E1039]
          Length = 160

 Score = 47.3 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADS 328
           + ++F  ++EAD+A ++  +G+ F +L +  GK      +D  +   S        +  +
Sbjct: 14  QIILFSTKEEADKAKKAANEGENFSKLVQAYGKNKTLKETDGKMNFDSTNPEIPTEVKKA 73

Query: 329 IFSLAKKGDFT------PVIHGSFGYVIAHVSNIK 357
            F L K G+ +              Y +  +   +
Sbjct: 74  AFKL-KNGEVSDIIPVTDPTTYQQSYYLVKMVKKQ 107


>gi|56416400|ref|YP_153474.1| hypothetical protein AM041 [Anaplasma marginale str. St. Maries]
 gi|254994626|ref|ZP_05276816.1| hypothetical protein AmarM_00174 [Anaplasma marginale str.
           Mississippi]
 gi|56387632|gb|AAV86219.1| hypothetical protein AM041 [Anaplasma marginale str. St. Maries]
          Length = 401

 Score = 47.3 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 88/247 (35%), Gaps = 16/247 (6%)

Query: 219 KYKDNYRAPE---YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +   +Y++ E     R+ +           + +S+ +++   ++ K       +  +EQ+
Sbjct: 115 QNGLDYKSVEDHLRSRVIWSKILATRVAPFLAVSDSDVENYVDEAKSA-GLETVLDLEQV 173

Query: 276 VFPNQKEA--DEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADSIFS 331
             P +     D     L KG    ++A    +    +D ++G  +  ++PDV ++     
Sbjct: 174 FVPFKAGNVLDSVLSELNKGVALDKIASRYREHAVYADRAVGVTASAFLPDVKIS---LV 230

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
            AK G     I    GY++  + N        F      I    R++ A    +   + +
Sbjct: 231 KAKVGQVIGPIRIDRGYLVLKLLNKVKVS-KGFLNSSASIK---RVSVARSDHENVLRVM 286

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
           +   A   + D I++   + +  L  V       K + + +     ++L          S
Sbjct: 287 KGRGANCDTFDGIAKNMGLDATSLD-VRVGDLASKLQFMLSNAELGEVLSSAAAAGGDSS 345

Query: 452 KDHTVAL 458
           +   V L
Sbjct: 346 EGEKVDL 352


>gi|29830081|ref|NP_824715.1| lipoprotein [Streptomyces avermitilis MA-4680]
 gi|29607191|dbj|BAC71250.1| putative lipoprotein [Streptomyces avermitilis MA-4680]
          Length = 219

 Score = 47.3 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 43/153 (28%), Gaps = 9/153 (5%)

Query: 21  LFVPFLIWGLSDALFSVSGSS---TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           L +   I   +  L +  G +       VG Q++  +   +   +               
Sbjct: 9   LVLSAAIVAAAPLLTACGGEAHPGAAAVVGGQRITVAQLESRVNEVRTAQRAATTDDAQY 68

Query: 78  ER--ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
           E+  A++  L +  L +LV    LD+  +D G+                           
Sbjct: 69  EQTIAKTGSLTRDTLHSLVLDRVLDRAAKDAGVSVTRKDAQQMRTALE--QQAGGT--KA 124

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
           +  + L + G+      D     +    +    
Sbjct: 125 LESAWLQQYGVAPGRLDDSLRTEIEAQKLATTL 157


>gi|256372364|ref|YP_003110188.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008948|gb|ACU54515.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 337

 Score = 47.3 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 16/143 (11%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           S  + ++      + ++   +QA Y  +   +   E     +++     EA+     L K
Sbjct: 137 SVDIVELEAALGHVSLTTSGVQAYYRAHPADF---ESYCGSEILVGTPTEAEAVVAKLHK 193

Query: 293 GKKFIQLAEEQGK-------SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           G+ F  +A+           +L   + G ++  +     +A S+ SL   G  + V+   
Sbjct: 194 GQSFAAVAKSSSTQNAAGGGALGCGTEGQYASSF--GSGVATSVTSLP-VGTPSGVVQVP 250

Query: 346 FGYVIAHVSNIKPSFTVSFQEVK 368
            G+ +     I     + F + +
Sbjct: 251 NGFAVF---EITSRSEIPFSQAE 270



 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 5/125 (4%)

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK---FFGYDGISQVFSGPV 557
           ++A  +V +  K G++F  + K+                E +    FG    + V S PV
Sbjct: 182 TEAEAVVAKLHK-GQSFAAVAKSSSTQNAAGGGALGCGTEGQYASSFGSGVATSVTSLPV 240

Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
                  ++    + VF++T+    P  + +   +       + LL+  +A      ++ 
Sbjct: 241 G-TPSGVVQVPNGFAVFEITSRSEIPFSQAELLAADTMVSHGQTLLNDYLARTVHTANIH 299

Query: 618 VHDNL 622
           V+  L
Sbjct: 300 VNRAL 304


>gi|167040994|ref|YP_001663979.1| hypothetical protein Teth514_2383 [Thermoanaerobacter sp. X514]
 gi|300913795|ref|ZP_07131112.1| conserved hypothetical protein [Thermoanaerobacter sp. X561]
 gi|307725518|ref|YP_003905269.1| hypothetical protein Thet_2431 [Thermoanaerobacter sp. X513]
 gi|166855234|gb|ABY93643.1| hypothetical protein Teth514_2383 [Thermoanaerobacter sp. X514]
 gi|300890480|gb|EFK85625.1| conserved hypothetical protein [Thermoanaerobacter sp. X561]
 gi|307582579|gb|ADN55978.1| hypothetical protein Thet_2431 [Thermoanaerobacter sp. X513]
          Length = 238

 Score = 47.3 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 17/133 (12%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
             +     +  V    +  + F               G  + S   ++  +D  IL  L+
Sbjct: 59  LQIGEGDIIAEVNGVPIYKNEFELRK-----------GLALASG-VQADNIDDYILQKLI 106

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF--SHDVFVSRLAREGINEKEYI 152
                +       ++     +   I +      + N++  +       +A  G+ E EY 
Sbjct: 107 REKVQEYLASKYNIKVSQNEINAYIEKE---KKEFNEYPEAKKKLNELIAASGMTEDEYW 163

Query: 153 DHYTKMLSRTDVV 165
           + Y K  +R  ++
Sbjct: 164 NTYEKYNARRILL 176


>gi|90419499|ref|ZP_01227409.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336436|gb|EAS50177.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 346

 Score = 47.3 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 46/152 (30%), Gaps = 23/152 (15%)

Query: 22  FVPFLIWG-----LSDALFSVSGSSTV-VSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
            + F++ G     L     SV  +S +   V    +   S+    +     + +  G   
Sbjct: 43  ALAFVLAGSAAATLPATTVSVQAASEIKAVVNGMPIT--SYQIRQRAAFLQLRRVGGNAT 100

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
                      +K  D L+  A   Q I   G+      V     R       +NK + +
Sbjct: 101 -----------QKATDELIDEALKKQEIGRRGIAIPDEAVDEAFGRFAA----ENKLTRE 145

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
                L+R G +   + D+    +     V  
Sbjct: 146 QLGQVLSRAGFSSDGFKDYIRVQMGWGQAVQA 177


>gi|117929118|ref|YP_873669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidothermus
           cellulolyticus 11B]
 gi|117649581|gb|ABK53683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidothermus
           cellulolyticus 11B]
          Length = 321

 Score = 47.3 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
              +VG  ++  +    +    L     +      + +A   GL + +L  L+    L +
Sbjct: 30  AAATVGDVRITDAQVQKAANVML-----QDSGTRAAAQADPAGLRRDVLTRLIKDVLLQR 84

Query: 102 FIEDIGLEADHGRVWGEIA 120
                G+      V  E+A
Sbjct: 85  AAASRGVTVSEADVQHELA 103


>gi|299473300|emb|CBN77699.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 6779

 Score = 47.3 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/359 (10%), Positives = 115/359 (32%), Gaps = 32/359 (8%)

Query: 278  PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY---IPDVSLADSIFSLAK 334
             +Q+ A E   ++ + +    + EE+   ++ ++ G   K+    I +  + D+  +L K
Sbjct: 5160 DSQEAAQE--DAILQAEGVAAIEEERSTQIAAVTDGIAPKKEAARIRERHIRDAA-ALEK 5216

Query: 335  KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-KKDIANQMRITKASEKVKEDYKRLEE 393
              +           + + +   K +   S +     +      +     + + D  +LE+
Sbjct: 5217 --ELKQHCRDQRAALASRLRKRKAAKEESLRRAGAGEEETAAALQTLEFEAERDVVQLEQ 5274

Query: 394  FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD----P 449
             L+     +  S+++            +G+D   +   A           F KD      
Sbjct: 5275 ALSGLKDTEATSQKQAAA-------LASGEDEHPQSGLAELRARHQESENFLKDSLRAEA 5327

Query: 450  LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE--EVSSKANQLV 507
             ++   +     +    ++KE    R R  +E+  +V       +  E    +  A +  
Sbjct: 5328 GARRARMRQRIAARTAERVKELTAQR-RSKDEIHAEVAAIRDAGEAEENRFEAVLATEAE 5386

Query: 508  LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN 567
                   +       +L  +      + +            +++      E V    ++ 
Sbjct: 5387 ARIHAARETALAAETSLEVTQEEARDLRKNHENAMIALAAEMAEKQRRGKEGVG-ARLQE 5445

Query: 568  GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
              +  + ++   K    + +D+  + L Q   ++         + +  +     ++++ 
Sbjct: 5446 KKAKRLAELKKVKAKDDEVQDEL-ARLEQEAEREQK-------QVEADIEQEAAILEQA 5496


>gi|302551954|ref|ZP_07304296.1| lipoprotein [Streptomyces viridochromogenes DSM 40736]
 gi|302469572|gb|EFL32665.1| lipoprotein [Streptomyces viridochromogenes DSM 40736]
          Length = 215

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 36/138 (26%), Gaps = 6/138 (4%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQ--KIGFVVNSERARSVGLDKKILDNLVSGATL 99
               VG Q++  S       +         +         AR+  L +  L  +V    L
Sbjct: 33  AAAVVGGQRITVSQLEERVGEVRAAQRAAVQNDAQYQQAIARTGTLTRDTLHTMVLDRVL 92

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            +  E+ G+      +    +            + +   + L + GI  +   ++    L
Sbjct: 93  HRAAENAGVTVTRREMQEMRSGLEE--QAGGAKALET--TWLQQYGIPPQRLEENLRLQL 148

Query: 160 SRTDVVGMFVGGMRPSNL 177
               +             
Sbjct: 149 EAQKLAEKLGTDTSRPEF 166


>gi|49474098|ref|YP_032140.1| hypothetical protein BQ04600 [Bartonella quintana str. Toulouse]
 gi|49239602|emb|CAF25959.1| hypothetical protein BQ04600 [Bartonella quintana str. Toulouse]
          Length = 324

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 21/165 (12%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFINSWKQ 62
           + K  +  +A   +  L V  L+  +S  L S   + +  VV+V    +           
Sbjct: 7   MNKFKKRILALFCIAPLSVSNLL--VSGFLISPVFAQTVIVVTVNGNPITNYDIQRR--- 61

Query: 63  ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
                           + +   L  +  + L++    +  I+   +E     V       
Sbjct: 62  ----------TAFLKLQQKQGNLAAQAKNELINEIVKNTEIKRRNIEVSDNEVESAFEN- 110

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
             F  ++N  + D     L +  I  + + D+    +    +V  
Sbjct: 111 --FAMQNN-MTVDQLNQILMQNDITVQHFKDYIRGQIGWGRLVNA 152


>gi|294892678|ref|XP_002774179.1| phosphatase, putative [Perkinsus marinus ATCC 50983]
 gi|239879396|gb|EER05995.1| phosphatase, putative [Perkinsus marinus ATCC 50983]
          Length = 498

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 14/99 (14%)

Query: 265 FSPEIRTVEQLVFPNQKEAD----EAFQSLKKGKK-FIQLAEEQGKSLSD-------ISL 312
            +P  R   + V   + EA+         LKK    F +L ++  + LS          L
Sbjct: 398 RNPRDRVRNKQVTRTKTEAENTMMSILADLKKDSSKFPELCKKHSECLSSRKAGNLCGDL 457

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
             F    +      ++ F+L   G+ + +++   G  I 
Sbjct: 458 DWFGHGKMM-AEFEEAAFAL-DVGEMSDLVYSPSGIHII 494


>gi|116308872|emb|CAH66008.1| H0613H07.6 [Oryza sativa Indica Group]
 gi|116317920|emb|CAH65943.1| H0716A07.1 [Oryza sativa Indica Group]
          Length = 123

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAF--QSLKKGKKFIQLAE---EQGKSLSDISLG 313
           + K  +  P+ R +      +          Q L     F  LA    +   +     LG
Sbjct: 24  RRKASWKDPDGRVISATTRADAAARLADLRDQILSGRANFADLAARHSDCSSARRGGDLG 83

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           +F +  +      D+ F+L K G+ +  +    G  I 
Sbjct: 84  TFGRRQMQKP-FEDATFAL-KVGEMSDTVDTDSGVHII 119


>gi|86749597|ref|YP_486093.1| hypothetical protein RPB_2477 [Rhodopseudomonas palustris HaA2]
 gi|86572625|gb|ABD07182.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 309

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 19/145 (13%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           S  V V  + +   +F    + +L  +S +                +++LD L+      
Sbjct: 31  SVAVMVNGEPIT--NFDIEQRSKLDKLSNQSRT------------RQQVLDELIDEKVKI 76

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           +  +  G+      +    A          + S D  V  LA +GI            + 
Sbjct: 77  REGKKFGVNPSDSDIDSSFASM----SSRMRMSPDQMVKMLAAQGIRPGTLKSKIKAEMV 132

Query: 161 -RTDVVGMFVGGMRPSNLLLDQAKR 184
             + V G F   +      +     
Sbjct: 133 WTSLVRGRFKDSLLVGEKDIQAQLA 157


>gi|300175738|emb|CBK21281.2| unnamed protein product [Blastocystis hominis]
          Length = 155

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 294 KKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           + F ++AE++     +     LG F +  +      D  F L K G+ + +I    G  I
Sbjct: 8   ETFKRIAEKESDCSSAKRGGDLGFFKRGQMQKP-FEDCAFRL-KVGEISNIIETDSGVHI 65

Query: 351 A 351
            
Sbjct: 66  I 66


>gi|312119670|ref|XP_003151720.1| hypothetical protein LOAG_16184 [Loa loa]
 gi|307753115|gb|EFO12349.1| hypothetical protein LOAG_16184 [Loa loa]
          Length = 55

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 309 DISLGSFSKEYIPDVSLADSIFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
              LG  ++  +   +  D+ F+L      K     P I   FGY I  V   K
Sbjct: 3   GGDLGWMTRGSMVG-TFQDAAFALPISTVDKPVYTDPPIRTQFGYHIIMVEAKK 55


>gi|38344861|emb|CAE01287.2| OSJNBa0020P07.4 [Oryza sativa Japonica Group]
 gi|125589154|gb|EAZ29504.1| hypothetical protein OsJ_13578 [Oryza sativa Japonica Group]
          Length = 123

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAF--QSLKKGKKFIQLAE---EQGKSLSDISLG 313
           + K  +  P+ R +      +          Q L     F  LA    +   +     LG
Sbjct: 24  RRKASWKDPDGRVISATTRADAAARLADLRDQILSGRANFADLAARHSDCSSARRGGDLG 83

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           +F +  +      D+ F+L K G+ +  +    G  I 
Sbjct: 84  TFGRRQMQKP-FEDATFAL-KVGEMSDTVDTDSGVHII 119


>gi|110680309|ref|YP_683316.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456425|gb|ABG32630.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter
           denitrificans OCh 114]
          Length = 406

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 18/143 (12%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           S  + V    +    F    +Q+   +    G              + +++ L++     
Sbjct: 30  SPAIQVNDAVIT--EFEIEQRQQFLTLLNAPGSS-----------RQAVVEELINERLRA 76

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q + + GLE     +         F G+ N    D F + L   GI  + + D     +S
Sbjct: 77  QAVANAGLELSDAALQE---GMTEFAGRVN-LGVDEFKTVLEENGIAAETFEDFVRVGVS 132

Query: 161 -RTDVVGMFVGGMRPSNLLLDQA 182
            R  +   F   ++ S   +DQA
Sbjct: 133 WRDFIAARFGPRLQVSEEEIDQA 155


>gi|307709160|ref|ZP_07645619.1| foldase protein prsA precursor [Streptococcus mitis SK564]
 gi|307620106|gb|EFN99223.1| foldase protein prsA precursor [Streptococcus mitis SK564]
          Length = 312

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 61/196 (31%), Gaps = 20/196 (10%)

Query: 203 PAIADPSNAVLTQWFEKYKDN-----YRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
               + + A   + + +             E ++       + E   K     +     Y
Sbjct: 76  EKEVNDTIAEEEKQYGENYQRVLSQAGMTLETRKAQIRTSKLVELAVKKAAEAELTDDAY 135

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKS----LSDISL 312
           +K  ++Y      T + +   N+ +A E  +  K     F QLA++         +   +
Sbjct: 136 KKAFDEYTPD--VTAQIIRLDNEDKAKEILEKAKASDADFAQLAKDNSTDEKTKANGGEI 193

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH------GSFGYVIAHVSNIKPSFTVSFQE 366
              S        +  + F+L   G  + VI        S  Y I  V+      + +   
Sbjct: 194 TFDSASTEVPEQVKKAAFALDVNG-VSDVITATGTQAYSSQYYIVKVTKKTE-KSSNIDN 251

Query: 367 VKKDIANQMRITKASE 382
            K+ +   +   K ++
Sbjct: 252 YKEKLKTVILTQKQND 267


>gi|262408152|ref|ZP_06084699.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_22]
 gi|294645122|ref|ZP_06722847.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294809726|ref|ZP_06768413.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|262353704|gb|EEZ02797.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_22]
 gi|292639546|gb|EFF57839.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294443060|gb|EFG11840.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 515

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKK--FIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
           P+  T    +   +   D  ++ ++      F +L E             + +       
Sbjct: 136 PQTVTSRH-LEEEKARMDSIYRVIQNQPDLNFNRLVEIYSDDKQS----RWIEGLETTSE 190

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             D  FSLAK G  +       G  I  V + + +F   +++V   +  ++R  +  +K
Sbjct: 191 FEDVAFSLAK-GTVSQPFFTPEGIHILKVIDREEAFA--YEDVSGRLIERLRRKEILDK 246


>gi|237714319|ref|ZP_04544800.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
 gi|229445483|gb|EEO51274.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
          Length = 514

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKK--FIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
           P+  T    +   +   D  ++ ++      F +L E             + +       
Sbjct: 135 PQTVTSRH-LEEEKARMDSIYRVIQNQPDLNFNRLVEIYSDDKQS----RWIEGLETTSE 189

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             D  FSLAK G  +       G  I  V + + +F   +++V   +  ++R  +  +K
Sbjct: 190 FEDVAFSLAK-GTVSQPFFTPEGIHILKVIDREEAFA--YEDVSGRLIERLRRKEILDK 245


>gi|317406836|gb|EFV86940.1| hypothetical protein HMPREF0005_05960 [Achromobacter xylosoxidans
           C54]
          Length = 104

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           K G+    +  + G+ I  + +++ +    +++VK ++   +R  +     +   + L  
Sbjct: 18  KAGEVAAPVQSAAGFHILKLVDLRAASVAPYEQVKDELRAALRTQRQELAARAYLEGLLN 77

Query: 394 FLALGTSMDEIS 405
             A   S+D  +
Sbjct: 78  --AGTVSIDGAA 87


>gi|126658177|ref|ZP_01729328.1| hypothetical protein CY0110_11602 [Cyanothece sp. CCY0110]
 gi|126620548|gb|EAZ91266.1| hypothetical protein CY0110_11602 [Cyanothece sp. CCY0110]
          Length = 257

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 71/209 (33%), Gaps = 25/209 (11%)

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR----ISYILFDVHEKEK 244
            + +   ++           +   +    +  +   R  +       ++  L    + E 
Sbjct: 28  QQILQQRIIEQASQQRDLTITEEEIQAEADNIRREKRLEKAVDTLAWLNGELITPDDWEA 87

Query: 245 KIEIS-----------NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
            I+ +           + E++  ++++   +   +   + Q++ P +K A E F  +++ 
Sbjct: 88  GIQDTLLRKKLAQNLFDKEVEKTFQQSWFNF---DQVLLYQIIVPYEKLALEIFYQIEEE 144

Query: 294 K-KFIQLAEEQGKSLSD-ISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
           +  F Q A          +  G   K   +     L+  IF+ A  G+  P      GY 
Sbjct: 145 EMSFYQAAHLYDIDEKRRLQCGYEGKVYRFNMKPELSPVIFA-ANPGEVIPPFKTEQGYH 203

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
           I  V     +     +E+ + I N+M   
Sbjct: 204 IIMVERFIKAQLT--EEIYEQIINKMFDQ 230


>gi|241948727|ref|XP_002417086.1| peptidyl prolyl cis/trans isomerase, putative [Candida dubliniensis
           CD36]
 gi|223640424|emb|CAX44676.1| peptidyl prolyl cis/trans isomerase, putative [Candida dubliniensis
           CD36]
          Length = 177

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 34/136 (25%)

Query: 249 SNDELQAEY------EKNKEKYFSPEIRTVEQLVFPNQKEA---------------DEAF 287
           ++ E+   Y         K          V  L+  N +                 DE+ 
Sbjct: 41  TDKEVLNPYIAKLKNNGYKPLVNEDGQVRVSHLLIKNNQSRKPKSWKSPDGITRTRDESI 100

Query: 288 QSLKK-------GK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336
           Q LKK       G+ K  +LA  +    S      LG FSK  +      ++ F+L   G
Sbjct: 101 QILKKHLERILSGEVKLSELATTESDCSSHDRGGDLGFFSKGQM-QPPFEEAAFNLH-VG 158

Query: 337 DFTPVIHGSFGYVIAH 352
           + + +I  + G  I  
Sbjct: 159 EVSNIIETNSGVHILQ 174


>gi|168335025|ref|ZP_02693139.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 525

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 64/242 (26%), Gaps = 38/242 (15%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------------ADEAFQSLKKG 293
            +E+    E  K  Y   E  T   ++     E                A+E    +K G
Sbjct: 199 EEEINERVELAKPSY---EKVTARHILIGTVDETGAPVSDEVKAEKLALANELLDRIKAG 255

Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           +   + A E  +     +     +F +  +       + F  A    +   +  S+GY I
Sbjct: 256 EDIGKXAAEYSEDPGSKATNGEYTFGRGEMV-PEFEAAAFDNADGAIWAEPVETSYGYHI 314

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE----EFLALGTSMDEISR 406
               +   +       ++ +     ++  A E++    +  +    +       +  ++ 
Sbjct: 315 GQTIDHIEADE---DAIRDEYIAYAQMNFAGEEIMSFVEAAKIDTTDAYEKIDLITNVAP 371

Query: 407 REKIVSIDLPLVDF--------AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            +    +               A        V       ++       DD       V  
Sbjct: 372 EQDFELMPEDTTAHDHDHDHAGASVTASSDNVTIAADDVEIAKEEVDSDDVAIAKEEVDS 431

Query: 459 PD 460
            D
Sbjct: 432 DD 433


>gi|327389259|gb|EGE87604.1| PPIC-type PPIASE domain protein [Streptococcus pneumoniae GA04375]
 gi|332073313|gb|EGI83792.1| PPIC-type PPIASE domain protein [Streptococcus pneumoniae GA17570]
 gi|332075596|gb|EGI86064.1| PPIC-type PPIASE domain protein [Streptococcus pneumoniae GA17545]
 gi|332201446|gb|EGJ15516.1| PPIC-type PPIASE domain protein [Streptococcus pneumoniae GA47368]
          Length = 211

 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 15/169 (8%)

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
              E ++       + E   K     +     Y+K  ++Y      T + +   N+ +A 
Sbjct: 1   MTLETRKAQIRTSKLVELAVKKVAEAELTDEAYKKAFDEYTPD--VTAQIIRLNNEDKAK 58

Query: 285 EAFQSLKK-GKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKGDFT 339
           E  +  K  G  F QLA++          G      S        +  + F+L   G  +
Sbjct: 59  EVLEKAKAEGADFAQLAKDNSTDEKTKENGGEITFDSASTEVPEQVKKAAFALDVDG-VS 117

Query: 340 PVIH------GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            VI        S  Y I  ++      + +  + K+ +   +   K ++
Sbjct: 118 DVITATGTQAYSSQYYIVKLTKKTE-KSSNIDDYKEKLKTVILTQKQND 165


>gi|213423790|ref|ZP_03356770.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 119

 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHG 344
             +  + G  F +LA         +  G      I +   +     S AKKGD    I  
Sbjct: 2   IVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRS 61

Query: 345 SFGYVIAHVSNIKPSFT 361
             G+ I  V++++    
Sbjct: 62  GVGFHILKVNDLRGQSQ 78


>gi|46124309|ref|XP_386708.1| hypothetical protein FG06532.1 [Gibberella zeae PH-1]
          Length = 177

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 12/91 (13%)

Query: 270 RTVEQLVFPNQKEA----DEAFQSLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIP 321
           R  E  +   ++EA     E  Q +K G     +LA    +   +     LG F +  + 
Sbjct: 88  REAE--ITRTKEEAFEIIKEHEQKIKSGSVSLGELALTESDCSSARKRGDLGYFGRGDM- 144

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                D+ F L+  G  + ++  + G  +  
Sbjct: 145 QKEFEDASFGLS-PGQMSEIVETASGLHLIE 174


>gi|213018605|ref|ZP_03334413.1| hypothetical protein C1A_378 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995556|gb|EEB56196.1| hypothetical protein C1A_378 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 365

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/179 (10%), Positives = 55/179 (30%), Gaps = 15/179 (8%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +                   I  ++ +++     +  +IL  L+    +   
Sbjct: 14  VADVNGEPISNLDIERRIN--------FINSLLGTQKINQKEVKSQILRQLIDEIIIVSE 65

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            + + +E  +  +   +    LF  +  K   D     + +  I+           L   
Sbjct: 66  AQKMNIELSNEELNNAVT---LFLTQSLKLKADEVDQYVKKHNIDLNTLKKQIKCQLLWN 122

Query: 163 DVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            ++    V  +  S+  +D A++   +    DY++     +      +  ++ +     
Sbjct: 123 KIIEVGVVPLINISDQEVDDARK---QKEKSDYLITFQEFIIPDQKIAEDLVKKLRTSN 178


>gi|322496765|emb|CBZ31835.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 115

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 284 DEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
            +  QS+++G+  F + A ++    S      LG F    +      D+  SL + G  +
Sbjct: 42  QKWRQSIEEGRVTFEEAARQRSDCSSYARGGDLGVFGPGEMMKP-FEDATKSL-EVGHVS 99

Query: 340 PVIHGSFGYVIAH 352
            ++    G  I  
Sbjct: 100 GIVVTDSGVHIIK 112


>gi|312135367|ref|YP_004002705.1| hypothetical protein Calow_1352 [Caldicellulosiruptor owensensis
           OL]
 gi|311775418|gb|ADQ04905.1| hypothetical protein Calow_1352 [Caldicellulosiruptor owensensis
           OL]
          Length = 236

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 60/200 (30%), Gaps = 40/200 (20%)

Query: 5   IRKASRT---WVAKIFLVVLFVPFLIWG---------LSDALFSVSGSSTVVSVGRQKVP 52
           IRK SR     +A I L ++   +++           +     S  G   V  V  +K+ 
Sbjct: 2   IRKKSRRNFLVIALISLSLILFSYVLASDIWTECGKKIKKIEQSKDG-RIVAVVNGEKIY 60

Query: 53  FSSFINSWKQELGMISQKIGFVVNSERARSVGL----------DKKILDNLVSGATLDQF 102
                 ++  E              +  +   +           K++L+ ++    L Q 
Sbjct: 61  KKDLEIAYALEEASY--LYKKEFYQKLLKKEKINSIKPPVQRTKKEVLNEMIENLLLIQA 118

Query: 103 IEDIGLEADHGRVWGEIAR-SPLFHG----------KDNKFSHDVFVSRLAREGINEKEY 151
            +  G             +                 +  KF++D+    +   GI  +EY
Sbjct: 119 AKKEGYFISEKEARDYYEKTMKTMQDVISGKVSGDVESAKFTNDIIEKLIKGWGITREEY 178

Query: 152 ----IDHYTKMLSRTDVVGM 167
               I+    MLS   ++  
Sbjct: 179 DKKTIEQTRNMLSIQKLLDA 198


>gi|168701470|ref|ZP_02733747.1| hypothetical protein GobsU_18230 [Gemmata obscuriglobus UQM 2246]
          Length = 594

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 19/183 (10%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           E   +  ++     K K    +  EL+  ++         E      +++ N+ EA +A+
Sbjct: 396 EDVNLPRVMLAHMCKAKVAPPTEAELRQAFDVRYG-----EKLDCRVIIWTNEDEAQKAY 450

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD----------SIFSLAKKGD 337
           + ++  +K       +         G  +   +  +  A           +     ++GD
Sbjct: 451 EKVRGSEKEFDAHARRSAVAGQPRTGVAADGRVAPIPRAQPLKEEEQVHHAAVKNLQRGD 510

Query: 338 FTP---VIHGSFGYVIAHVSNIKPS-FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
            +P   +  GSFG+++     + P+  T SF++ K  +  +    K   +       L +
Sbjct: 511 VSPLLRIEPGSFGFMVVKCDRVIPADKTKSFEKEKAALMLEALDAKVVNEFPRFRNELMQ 570

Query: 394 FLA 396
             A
Sbjct: 571 QAA 573


>gi|308496066|ref|XP_003110221.1| hypothetical protein CRE_06423 [Caenorhabditis remanei]
 gi|308245058|gb|EFO89010.1| hypothetical protein CRE_06423 [Caenorhabditis remanei]
          Length = 162

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 14/99 (14%)

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQ----SLKKGK----KFIQLAEEQG---KSLSDISLG 313
            +P     + +   ++++A    +     L+       KF  LA++      +     LG
Sbjct: 64  RNPSSWRSDHIT-RSKEDAINILKNYERELRDASNIEGKFRDLAKQFSDCSSAKRGGDLG 122

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            F +  +      D+ F+L + G+ +P++  S G  + +
Sbjct: 123 PFERRQMQKP-FEDASFAL-EVGEMSPIVDTSSGVHLIY 159


>gi|281208876|gb|EFA83051.1| hypothetical protein PPL_03839 [Polysphondylium pallidum PN500]
          Length = 254

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 10/131 (7%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
              +  I    +   K    S   ++    K++E   +P     + +    ++   +  +
Sbjct: 124 TYVLKGISGSSNNSSKPAGPSKVSVRHLLVKHRES-RNPRSWRQDNITITKEEAIKQLQE 182

Query: 289 ---SLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
               ++ G+  F  LA++     S      L +F++  +      D  FSL + G  + +
Sbjct: 183 YRNQIQTGQNSFESLAKQFSDCSSAKHGGMLDAFTRGQMQKP-FEDMSFSL-QVGQLSDI 240

Query: 342 IHGSFGYVIAH 352
           +    G  I  
Sbjct: 241 VSTDSGVHIIE 251


>gi|190571205|ref|YP_001975563.1| hypothetical protein WPa_0803 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357477|emb|CAQ54911.1| hypothetical protein WP0803 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 375

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/179 (10%), Positives = 55/179 (30%), Gaps = 15/179 (8%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +                   I  ++ +++     +  +IL  L+    +   
Sbjct: 24  VADVNGEPISNLDIERRIN--------FINSLLGTQKINQKEVKSQILRQLIDEIIIVSE 75

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
            + + +E  +  +   +    LF  +  K   D     + +  I+           L   
Sbjct: 76  AQKMNIELSNEELNNAVT---LFLTQSLKLKADEVDQYVKKHNIDLNTLKKQIKCQLLWN 132

Query: 163 DVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            ++    V  +  S+  +D A++   +    DY++     +      +  ++ +     
Sbjct: 133 KIIEVGVVPLINISDQEVDDARK---QKEKSDYLITFQEFIIPDQKIAEDLVKKLRTSN 188


>gi|330446025|ref|ZP_08309677.1| putative uncharacterized protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490216|dbj|GAA04174.1| putative uncharacterized protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 269

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 80/247 (32%), Gaps = 67/247 (27%)

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
             +MLS+  +      G        D         R + Y+      +  +   + ++L 
Sbjct: 79  LKQMLSQQALKLGLEKG--------DPNLNEMLMQRYLSYV----SQLAKLNATNTSLLH 126

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           Q++  ++  Y+ P+   + Y      E +  I   +                      +Q
Sbjct: 127 QYYLTHQTRYKHPDMYSLCYHFLTPQEVQHPISTMDS---------------------QQ 165

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
            +    K+A               LA+          LG+ +          D++ +LA 
Sbjct: 166 CLTDVSKQAL--------------LAK----------LGTKT---------VDALAALA- 191

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
              ++  I   FG +   V + + +  +SF++ K+ +A+       + K+    K+    
Sbjct: 192 PNQWSTPIDTPFGAIAIKVLDYQKAGVLSFKQAKQQLAHDFARDDVNSKIAAVIKQYHIA 251

Query: 395 LALGTSM 401
           L  G+  
Sbjct: 252 LPAGSDF 258


>gi|312792332|ref|YP_004025255.1| hypothetical protein Calkr_0065 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179472|gb|ADQ39642.1| hypothetical protein Calkr_0065 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 230

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSFINSWKQELGMIS- 68
           KI +  +    ++ G+    +S++         V  V   K+       ++  E      
Sbjct: 5   KILIAGICSLAVLIGIVAVGWSLASKKELPKDVVAVVNGHKIYKKDLDMAYSLEELRYEN 64

Query: 69  -----QKIGFVVNSERARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
                +++     ++ A+ +         ++ILD ++    L    +  G E        
Sbjct: 65  AKVSFEELKKKYGADVAKELEGSLRKKTRQEILDEMIEWLVLYDEAKKEGCEVSLDEAKA 124

Query: 118 -------EIARSPLFHGKDNKFSH-----DVFVSRLAREGINEKEYIDHYTKM 158
                   I           + ++     ++  S + ++GI+EKE+ +   K 
Sbjct: 125 YYNKTQKMIQDVLSGKLSTGEMNNTQRAIELINSFVKKQGISEKEHEEMVIKE 177


>gi|126659217|ref|ZP_01730355.1| hypothetical protein CY0110_04558 [Cyanothece sp. CCY0110]
 gi|126619522|gb|EAZ90253.1| hypothetical protein CY0110_04558 [Cyanothece sp. CCY0110]
          Length = 260

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 61/184 (33%), Gaps = 14/184 (7%)

Query: 196 VLNNRHVPAIADPSNA-VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
            L  +        S+   L  W   +      PE      +     EK K +   +  L 
Sbjct: 54  TLAKQQFYQKQQISDENQLKVWLNHHG---MTPEQLETLSVRDLKIEKFKHLTWGDK-LD 109

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG 313
             + K K +    +      +   +   A E +  +++G+  F +LA +  +     + G
Sbjct: 110 PYFVKCKGQL---DRVVYSLIRTKDPGVAQELYFRIQEGENTFSELARQYSQGSEAQTGG 166

Query: 314 SFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
                 +  P   +A  I + ++ G  +P       ++I  +     +        K+ +
Sbjct: 167 LLGPVELNTPHPKIAQ-ILAASRPGQLSPPTQVGEWWIIVRLEKYMSAQLD--DNTKQRL 223

Query: 372 ANQM 375
            N++
Sbjct: 224 LNEL 227


>gi|154275646|ref|XP_001538674.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415114|gb|EDN10476.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 135

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF  +A E  +  +    SLG   +  + +       
Sbjct: 42  VRHILCEKHSKKEEAAEKLRNGAKFDDVAREFSEDKARQGGSLGWKVRGSL-NGEFEKVA 100

Query: 330 FSLA 333
           + L 
Sbjct: 101 YGLE 104


>gi|332983150|ref|YP_004464591.1| hypothetical protein Mahau_2629 [Mahella australiensis 50-1 BON]
 gi|332700828|gb|AEE97769.1| hypothetical protein Mahau_2629 [Mahella australiensis 50-1 BON]
          Length = 240

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 62/196 (31%), Gaps = 26/196 (13%)

Query: 7   KASRTWVAKIFLVVLFVPFLI--WGLSDALFSVSG-----------SSTVVSVGRQKVPF 53
           K + T +A   + +L + F     G +++++S  G            +T+ ++G  ++  
Sbjct: 3   KKTGTIIAIAAVALLLIAFFAINTGFAESMWSYIGEQAASIREQKNDATIATIGDARITQ 62

Query: 54  SSFINSWKQELGMISQKIGFVVN-SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
           +    +          +   +             +K+LD+L+    L Q     G     
Sbjct: 63  NDLDLAMLMREQAYELQSKEIDELQNMMPEQPTKEKVLDSLIENEILYQEAVKRGCSVSL 122

Query: 113 GRVWGEIARSPLFHGK--DNKFSHDVFVSRLAR----------EGINEKEYIDHYTKMLS 160
                 +  +   + +    K + D     +             G+  +EY+++    + 
Sbjct: 123 DEAKKYLEDNKKIYDEISSGKLTPDNKDMAIEACEVTEDFAKGMGMTIEEYMEYLAPAVQ 182

Query: 161 RTDVVGMFVGGMRPSN 176
           +   +      +  S 
Sbjct: 183 KELSIAKLKQSILQSA 198


>gi|85706339|ref|ZP_01037433.1| PPIC-type PPIASE domain protein [Roseovarius sp. 217]
 gi|85669112|gb|EAQ23979.1| PPIC-type PPIASE domain protein [Roseovarius sp. 217]
          Length = 420

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 55/176 (31%), Gaps = 20/176 (11%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           +  + V  Q +          Q+   +        +          +   + L+      
Sbjct: 42  APAIHVNDQAITGYEL-----QQRARMLTLFRAPGDP--------RRLAREQLIEERIKL 88

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
                +GL  +   V         F G+ N  + D  +S L   G++++ + +     ++
Sbjct: 89  DAARAVGLVVEDDMVR---TGMEEFAGRAN-MTADQLISSLEEAGVSQQSFREFVRAGIT 144

Query: 161 -RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            R      F   +  S   L++A R      +V   VL +  +  +    +A   Q
Sbjct: 145 WRELTRAQFASRVSVSEDDLERATRALTGGAAVR--VLLSEIILPVTSLGDAEAKQ 198



 Score = 38.0 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 90/293 (30%), Gaps = 41/293 (13%)

Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEK---YKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
           D +          A+ +   L    E+    + ++R      I++      +   ++ +S
Sbjct: 101 DMVRTGMEEFAGRANMTADQLISSLEEAGVSQQSFREFVRAGITWRELTRAQFASRVSVS 160

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPN----QKEADEAFQ----SLKKGKKFIQLAE 301
            D+L+           +     + +++ P       EA +A             F   A 
Sbjct: 161 EDDLERA--TRALTGGAAVRVLLSEIILPVTSLGDAEAKQALATQIAEADSEGDFAAAAR 218

Query: 302 EQGKSLSDISLGSFSKEYIPDVS--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           +   + S    G      + D+   L   +  LA  G+ +  +    G  + ++ +I+ +
Sbjct: 219 QYSAAPSAGRGGRMEWVALSDLPAGLRPIVLGLA-PGEVSDPLPIDGGLALFYMRDIEET 277

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI-VSIDLPLV 418
              + +                       +    +++ G S + + R  ++  ++D    
Sbjct: 278 SVAAPE-------------------YSAIEYAAYYISGGRSAEALQRAAQVRAAVDTCDD 318

Query: 419 DFAGKDVKGKEVA-----AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
            +     +  EV      A     Q +     + DP     +V   +G  +  
Sbjct: 319 LYGVAKGQPPEVLERGSKAPEEIPQDIAAALSQLDPGETSASVTRSNGQTLVF 371


>gi|195567999|ref|XP_002107543.1| GD17528 [Drosophila simulans]
 gi|194204953|gb|EDX18529.1| GD17528 [Drosophila simulans]
          Length = 166

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAFQ-----SLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA    +      + +   F +LA        +     LG F +  +   +  +
Sbjct: 81  ITRTKEEAQLLLEVYRNKIVNQEATFEELARSYSDCSSAKRGGDLGKFGRGQM-QAAFEE 139

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F L      + ++    G  I 
Sbjct: 140 AAFKL-NVNQLSGIVDSDSGLHII 162


>gi|149179628|ref|ZP_01858140.1| peptidyl-prolyl isomerase [Planctomyces maris DSM 8797]
 gi|148841534|gb|EDL55985.1| peptidyl-prolyl isomerase [Planctomyces maris DSM 8797]
          Length = 217

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 11/140 (7%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V    +  +         L ++       + +E  +   +  ++L NL+      Q  
Sbjct: 59  AVVNGYVITGTDLDQR----LALLVNANQTEIPAEELQR--VRAQVLRNLIDETLQIQAA 112

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RT 162
           E   +      V    AR             + +   LA  G +           L+ + 
Sbjct: 113 EAEEIVISDAEVEQTFARVAA-QNNQRPEDMENY---LASIGSSSASLKRQIRGELAWQR 168

Query: 163 DVVGMFVGGMRPSNLLLDQA 182
            +       +  S   +++ 
Sbjct: 169 LLRQKVSFFVNVSAEEVNEL 188


>gi|154332458|ref|XP_001562603.1| PPIase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134059493|emb|CAM41720.1| putative peptidyl-prolyl cis-trans isomerase/rotamase [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 115

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 279 NQKEAD--EAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSL 332
           ++  A+  +  QS++ GK  F   A ++    S      LG F    +      D+   L
Sbjct: 35  DEAAAELQQWRQSIEDGKMTFEDAARQRSDCGSYVRGGDLGVFGPGEMMKP-FEDATKGL 93

Query: 333 AKKGDFTPVIHGSFGYVIAH 352
            + G  + ++    G  +  
Sbjct: 94  -EVGQMSGLVATDSGVHLIK 112


>gi|51557620|gb|AAU06450.1| surface antigen [Rickettsia heilongjiangensis]
          Length = 1588

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 96/274 (35%), Gaps = 21/274 (7%)

Query: 365 QEVK---KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS--IDLPLVD 419
           +E+K   ++I  +++I K  +K+K+  K L         + +   +  I +  + +   +
Sbjct: 270 EELKSRAEEIETKIKIGKNKDKIKKLEKELTSKNNKADRLFQKIEKIDIPANKVSIKSQE 329

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
                    +V+A   ++  +          +K       D      +   +   R++K 
Sbjct: 330 TVPVTTASTKVSAFQAQQARINEARQGVFNKNKSS----GDN----ARKSSARTEREKKK 381

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG--KNFRDIGKNLGASLL--TTNQIN 535
           +E    + +  K  K  +  S KA ++     KE      R +   +       T     
Sbjct: 382 QEAQKQLSEIKKQEKAIKTASDKAKEVAASVKKETSRTALRAMQDKMNGDFDGPTYKAGA 441

Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
           +  +  ++    G+ ++     E  + + +   +    + V      P QE +  I   +
Sbjct: 442 KKQSPTQYHLSHGVQRILGEQPEDEEGYLVPRKVQQQPYSVM----LPNQEIEDPIPSHS 497

Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
           Q + +  +   I YL S     ++   I   +DG
Sbjct: 498 QDIYESKVSQYINYLNSIQPNQLNQAQIDSVIDG 531


>gi|317405293|gb|EFV85619.1| peptidylprolyl isomerase [Achromobacter xylosoxidans C54]
          Length = 179

 Score = 46.5 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 14/96 (14%)

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQS-LKKGKKFIQLAEEQ 303
           +  Y+ N +++   E+   + ++F           +  A       L     F ++A  Q
Sbjct: 79  RRYYQANPQRFIVGELIEADHILFQVTPGVNLDMLRAHASAVLADLLADPSGFAEVARRQ 138

Query: 304 G---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
                +    +LG   +          ++F+L   G
Sbjct: 139 SNCPSAAVGGNLGQLGRGDTV-PEFEKAVFALPAGG 173


>gi|289167826|ref|YP_003446095.1| peptidylprolyl isomerase [Streptococcus mitis B6]
 gi|288907393|emb|CBJ22230.1| peptidylprolyl isomerase [Streptococcus mitis B6]
          Length = 312

 Score = 46.5 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 17/187 (9%)

Query: 211 AVLTQWFEKYK----DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
               Q+ E Y+          E ++       + E   K     +     Y+K  ++Y  
Sbjct: 85  EEEKQYGENYQRVLSQAGMTLETRKAQIRTSKLVELAVKKAAEAELTDDAYKKAFDEYTP 144

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKS----LSDISLGSFSKEYIP 321
               T + +   N+ +A E  +  K     F QLA++         +   +   S     
Sbjct: 145 D--VTAQIIRLDNEDKAKEILEKAKASDADFAQLAKDNSTDEKTKANGGEITFDSASTEV 202

Query: 322 DVSLADSIFSLAKKGD-----FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
              +  + F+L   G       T     S  Y I  +       + +  + K+ +   + 
Sbjct: 203 PEQVKKAAFALDVNGISDVISVTGTQAYSSQYYIVKLIKKTE-KSSNIDDYKEKLKTVIL 261

Query: 377 ITKASEK 383
             K ++ 
Sbjct: 262 TQKQNDA 268



 Score = 37.7 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 37/195 (18%)

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
           E+ +S    +++L NL      +   +  G E D   V   IA          K   + +
Sbjct: 45  EQVKSNPSAQQVLLNLTIQKVFE---KQYGSEVDDKEVNDTIAEEE-------KQYGENY 94

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE---NRSVDY 194
              L++ G+     ++     +  + +V + V     + L  D  K+ + E   + +   
Sbjct: 95  QRVLSQAGMT----LETRKAQIRTSKLVELAVKKAAEAELTDDAYKKAFDEYTPDVTAQI 150

Query: 195 IVLNNRHVPA----IADPSNAVLTQWFEKYKDNYRA----------------PEYKRISY 234
           I L+N          A  S+A   Q  +    + +                 PE  + + 
Sbjct: 151 IRLDNEDKAKEILEKAKASDADFAQLAKDNSTDEKTKANGGEITFDSASTEVPEQVKKAA 210

Query: 235 ILFDVHEKEKKIEIS 249
              DV+     I ++
Sbjct: 211 FALDVNGISDVISVT 225


>gi|257459188|ref|ZP_05624307.1| putative periplasmic protein [Campylobacter gracilis RM3268]
 gi|257443573|gb|EEV18697.1| putative periplasmic protein [Campylobacter gracilis RM3268]
          Length = 296

 Score = 46.5 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/207 (8%), Positives = 57/207 (27%), Gaps = 55/207 (26%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +  +  V  + +            L  + +  G              +  ++ L+     
Sbjct: 22  NGVIAVVDDEPITGYE--------LARVQKLTGAS-----------PQAAMEILIGQKLQ 62

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
              I+  G+  +   +   +          NK S D   + + ++GIN  ++  +  + L
Sbjct: 63  QSEIKRRGIAVNDAEIDARLKAI----ADQNKLSLDQLKTAVQKQGINYDDFKANVRRTL 118

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
               + G     +               ++R+                 +   + +++ +
Sbjct: 119 LEEKLYGSIFADV---------------QHRT-----------------TPENVKKFYSQ 146

Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKI 246
               +   +   ++  +        +I
Sbjct: 147 NSSLFTTFDSITLTRYIAKSQAPLDRI 173


>gi|90578654|ref|ZP_01234464.1| hypothetical protein VAS14_03093 [Vibrio angustum S14]
 gi|90439487|gb|EAS64668.1| hypothetical protein VAS14_03093 [Vibrio angustum S14]
          Length = 269

 Score = 46.5 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 70/236 (29%), Gaps = 67/236 (28%)

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
             +MLS+  +      G        D         R + Y+      +  I   +  +L 
Sbjct: 79  LKQMLSQQALKLGLEKG--------DPNLNEMLMQRYLSYV----SQLAKINATNTTLLH 126

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           Q++  +K  Y+ P+   + Y      E +  I                          +Q
Sbjct: 127 QYYLTHKQRYKHPDMYSLCYHFLTPQEVQHPIS---------------------SMDYQQ 165

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
            +    K+A               LA+   K++                    +  +   
Sbjct: 166 CLSDVSKQAL--------------LAKLGSKTV--------------------AALTALA 191

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
              ++  I   FG +   V + + +  +SF++ K+ +A+       + K+    K+
Sbjct: 192 PNQWSTPIDTPFGAIAVKVLDYQKAGILSFKQAKQQLAHDFARDDVNNKIGAVIKQ 247


>gi|317128538|ref|YP_004094820.1| hypothetical protein Bcell_1827 [Bacillus cellulosilyticus DSM
           2522]
 gi|315473486|gb|ADU30089.1| hypothetical protein Bcell_1827 [Bacillus cellulosilyticus DSM
           2522]
          Length = 179

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 44/165 (26%), Gaps = 12/165 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M +   K + +       V+L +    +        V   + V +V  + + +   I   
Sbjct: 1   MFKYF-KFNNSIFIISIAVLLILILAPFNKGKMEEQVEIDAVVATVNGENIIYKDVIKVK 59

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                     +    +        L +  ++  +    L Q  + + +E     V  ++ 
Sbjct: 60  NSMR------LKKYNDLTNNNEDKLTEAAIEQRIIHRLLIQEAQRLNIEVSDEEVAIQLQ 113

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
                   D           L  +   E   +    + L    ++
Sbjct: 114 LIKEVLPSD-----LTLEESLILQNYTEDALLAEIKEQLMIERLL 153


>gi|148555285|ref|YP_001262867.1| hypothetical protein Swit_2370 [Sphingomonas wittichii RW1]
 gi|148500475|gb|ABQ68729.1| hypothetical protein Swit_2370 [Sphingomonas wittichii RW1]
          Length = 286

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 11/79 (13%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              +  V  +++         +          G  +  +      L K++L  L+    +
Sbjct: 27  GQILAIVNGEEISLQELNAELQ----------GTRI-PDSVDRDKLRKQVLQRLIDRKLI 75

Query: 100 DQFIEDIGLEADHGRVWGE 118
            Q   + GL+     V  +
Sbjct: 76  VQKAREQGLDKTPEYVTQQ 94


>gi|15639913|ref|NP_219364.1| hypothetical protein TP0928 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189026151|ref|YP_001933923.1| hypothetical protein TPASS_0928 [Treponema pallidum subsp. pallidum
           SS14]
 gi|14285975|sp|O83898|Y928_TREPA RecName: Full=Uncharacterized protein TP_0928
 gi|3323250|gb|AAC65887.1| predicted coding region TP0928 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018726|gb|ACD71344.1| hypothetical protein TPASS_0928 [Treponema pallidum subsp. pallidum
           SS14]
          Length = 246

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 72/216 (33%), Gaps = 30/216 (13%)

Query: 6   RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
           R A  +    + L V  + F+   L        G   + S G   +  +   + + Q+  
Sbjct: 8   RGALASTGGCVVLAVAALMFVF--LPALSGGGHGHVRLGSWGGVALTNAP-DSLFSQQYS 64

Query: 66  MISQKI-GFVVNSERARS-VGLDKKILDNLVSGATLDQFI-----EDIGLEADHGRVWGE 118
            ++Q    + +  + A+   G+D+++L      A + Q       +  G       +  E
Sbjct: 65  ALAQTAERYNLYPKDAQEREGMDRRVL-RAAFRAAVVQLAGTEQTKQSGFTLSEELLDRE 123

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV--------- 169
           +     +   D  +S   +           +       K +  + +   ++         
Sbjct: 124 VLS--FYADADGTYSPQRYQG-------TPEHVRLSQRKKMRDSLLSDQYLYHLFGKETG 174

Query: 170 -GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
            GG++ ++  L   +    + RS  Y+VL     PA
Sbjct: 175 RGGLKLNSRELRFVQDMAKKERSFRYVVLGEERFPA 210


>gi|294461993|gb|ADE76552.1| unknown [Picea sitchensis]
          Length = 310

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 12/115 (10%)

Query: 272 VEQLVFPNQKEAD--EAFQSL-KKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSL 325
           V  ++ P  K     E  Q + ++G     LA E            LG   K  +     
Sbjct: 106 VHHILVPEDKLNLLLELQQRIVREGVDLSDLATEYSICPSKEEGGMLGWVQKGQMV-QEF 164

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
            ++ FS              FG+ +  V + +       Q ++ +   Q+++  A
Sbjct: 165 EEAAFSAPLNKLVR--CKTKFGWHLLQVLSEREGGF--LQAIEPE-ELQVKMQDA 214


>gi|332710150|ref|ZP_08430103.1| hypothetical protein LYNGBM3L_48230 [Lyngbya majuscula 3L]
 gi|332351108|gb|EGJ30695.1| hypothetical protein LYNGBM3L_48230 [Lyngbya majuscula 3L]
          Length = 243

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 76/218 (34%), Gaps = 24/218 (11%)

Query: 192 VDYIVLNNRHVPAIADPSN--AVLTQWFEKY------------KDNYRAPEYKRISYILF 237
           +  I+++     A   P        Q+ EK             K     P       +  
Sbjct: 33  IREIIIDEAVATASCTPEEKAQAYQQFLEKNQLIDETAKQAWLKQRGMNPAQLEALAVRS 92

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KF 296
            + EK K+   S  +L++ + + K +    +      +   +   A E +  +++G+  F
Sbjct: 93  ILIEKYKQQTWS-HKLESYFLERKGQL---DRVIYSLIRTKDPGVAQEIYFRIQEGEESF 148

Query: 297 IQLAEEQGKSLSDISLGSFSKEY--IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
             LA E  +     + G        +P  +LA  +  L++ G   P        +I  + 
Sbjct: 149 ADLAREYSQGPEAQTGGLIGPVELSVPHPALAQ-MLRLSQPGQLFPPTRLGEWLLIVRLE 207

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
              P+       +++ + N+   T  SE++ +    L+
Sbjct: 208 KFMPAQLD--DSMRQRLLNECFSTWLSEQLNQQLAALD 243


>gi|222474770|ref|YP_002563185.1| hypothetical protein AMF_031 [Anaplasma marginale str. Florida]
 gi|255002737|ref|ZP_05277701.1| hypothetical protein AmarPR_00174 [Anaplasma marginale str. Puerto
           Rico]
 gi|255003870|ref|ZP_05278671.1| hypothetical protein AmarV_00169 [Anaplasma marginale str.
           Virginia]
 gi|222418906|gb|ACM48929.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
          Length = 401

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 82/232 (35%), Gaps = 13/232 (5%)

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA--DEAFQ 288
           R+ +           + +S+ +++   ++ K       +  +EQ+  P +     D    
Sbjct: 130 RVIWSKILATRVAPFLAVSDSDVENYVDEAKSA-GLETVLDLEQVFVPFKAGNVLDSVLS 188

Query: 289 SLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            L KG    ++A    +    +D ++G  +  ++PDV ++      AK G     I    
Sbjct: 189 ELNKGVALDKIASRYREHAVYADRAVGVTASAFLPDVKIS---LVKAKVGQVIGPIRIDR 245

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
           GY++  + N        F      I    R++ A    +   + ++   A   + D I++
Sbjct: 246 GYLVLKLLNKVKVS-KGFLNSSASIK---RVSVARSDHENVLRVMKGRGANCDTFDGIAK 301

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
              + +  L  V       K + + +     ++L          S+   V L
Sbjct: 302 NMGLDATSLD-VRVGDLASKLQFMLSNAELGEVLSSAAAAGGDSSEGEKVDL 352


>gi|268563356|ref|XP_002646914.1| Hypothetical protein CBG19616 [Caenorhabditis briggsae]
 gi|187024119|emb|CAP36829.1| hypothetical protein CBG_19616 [Caenorhabditis briggsae AF16]
          Length = 161

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 276 VFPNQKEADEAF----QSLKKGKK----FIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
           +  ++++A        + LK        F +LA++      +     LG F +  +    
Sbjct: 73  ITRSKEDAINILRNYEKELKDASDVQGKFRELAKQFSDCSSAKRGGDLGPFKRRQMQKP- 131

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             D+ F+L + G+ + ++    G  + +
Sbjct: 132 FEDASFAL-EVGEMSDIVDTDSGVHLIY 158


>gi|224370696|ref|YP_002604860.1| RpoC [Desulfobacterium autotrophicum HRM2]
 gi|223693413|gb|ACN16696.1| RpoC [Desulfobacterium autotrophicum HRM2]
          Length = 1385

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 62/144 (43%), Gaps = 19/144 (13%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKE-----YIPDV 323
           + ++   +++ A EA Q LK  + F +++E   ++    +  + G  +++     +    
Sbjct: 502 MSRIRVADKETALEALQMLKSARTFDEVSELFSDEETKATQGATGVLTRKEFKNVFQVSE 561

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             A+ +F L K G F+ VI     Y I  V   +   T+ F      + N++    A  +
Sbjct: 562 IKAEQLFGLRK-GQFSDVIESGGFYNIFRVDLRE--TTIPF-----HLVNRLMTKSAVRE 613

Query: 384 VKEDYKR---LEEFLALGTSMDEI 404
           + +   R   ++E + L   + +I
Sbjct: 614 LVDYAYRNIGIKETVVLADRLKDI 637


>gi|1688322|gb|AAB36960.1| PinA [Dictyostelium discoideum]
          Length = 243

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 8/84 (9%)

Query: 276 VFPNQKEADEAFQSLKK-----GKKFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLADS 328
           +   ++ A       +         F  LA +     S    G     K         D 
Sbjct: 158 ITRTKERAIAKLNEYRATIISGSATFEDLAHKNSDCSSAKRGGYLDPFKRGQMQRPFEDC 217

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAH 352
            FSL K G+ + ++    G  I  
Sbjct: 218 AFSL-KVGEVSGIVDTDSGVHIIE 240


>gi|66827051|ref|XP_646880.1| hypothetical protein DDB_G0268618 [Dictyostelium discoideum AX4]
 gi|60474962|gb|EAL72898.1| hypothetical protein DDB_G0268618 [Dictyostelium discoideum AX4]
          Length = 268

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 8/84 (9%)

Query: 276 VFPNQKEADEAFQSLKK-----GKKFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLADS 328
           +   ++ A       +         F  LA +     S    G     K         D 
Sbjct: 183 ITRTKERAIAKLNEYRATIISGSATFEDLAHKNSDCSSAKRGGYLDPFKRGQMQRPFEDC 242

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAH 352
            FSL K G+ + ++    G  I  
Sbjct: 243 AFSL-KVGEVSGIVDTDSGVHIIE 265


>gi|317130860|ref|YP_004097142.1| hypothetical protein Bcell_4184 [Bacillus cellulosilyticus DSM
           2522]
 gi|315475808|gb|ADU32411.1| hypothetical protein Bcell_4184 [Bacillus cellulosilyticus DSM
           2522]
          Length = 266

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 55/146 (37%), Gaps = 6/146 (4%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS--VGLDKKILDNLVSGAT 98
             + +V  + +    F+   +Q L      +G  ++ E +      L++ + + L++   
Sbjct: 66  DVIATVNGEDIGKEDFVALLEQHLMQ-QASMGLTLDMEGSDEILAMLEEDVANQLINQRV 124

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + Q  ++ G +A    +  E+        +    S ++ +  L  +G++  ++     + 
Sbjct: 125 VYQKAQEEGFDATDEEIDEELELI---RMQYQIESEEMLIEILEADGVSVDDFRQDIAQY 181

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKR 184
           +S    +   +     S+  + +   
Sbjct: 182 ISGEKFLDSRIDTTTVSDEAVQEEYD 207


>gi|163815686|ref|ZP_02207058.1| hypothetical protein COPEUT_01866 [Coprococcus eutactus ATCC 27759]
 gi|158448991|gb|EDP25986.1| hypothetical protein COPEUT_01866 [Coprococcus eutactus ATCC 27759]
          Length = 335

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 76/207 (36%), Gaps = 17/207 (8%)

Query: 209 SNAVLTQW-FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ--AEYEKNKEKYF 265
           ++  + +   E+     +  E   ++  ++    K+   EIS+++ +    Y+   E Y 
Sbjct: 123 TDEQIAEVGLEENTVK-QVLEESALADKIYTYVMKQSSTEISDEQARMSTFYDMFFECYS 181

Query: 266 SPEIRTV-----EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSK 317
             +   +      ++    +K+ADEA+ ++ +      L      S   +      + S+
Sbjct: 182 EDDFGNITLYPQSKIDVQ-KKKADEAYAAIVEESDNSNLNISFLGSAKSLKYAGTHTMSR 240

Query: 318 EYIPDVSLADSIFSL--AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           + I      D++  L     GD +PV+   +GY I  + ++         E K+ +    
Sbjct: 241 DEIVSTYGQDTLDILYSLSDGDISPVVQTEYGYHIFQMISLTDETAT--AENKEKLTEAA 298

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMD 402
                   + +    L+   +    +D
Sbjct: 299 DGEYYDNLMSDWIDELDSSYSYSKRVD 325


>gi|237753051|ref|ZP_04583531.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375318|gb|EEO25409.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 284

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 59/218 (27%), Gaps = 59/218 (27%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           K+ +  + +       + +L S         V    V       +  Q+   +SQ +   
Sbjct: 7   KVLITSIILSVSAVSAAPSLVSG----IAFFVNGDPVTLVELYKT--QQREKVSQDV--- 57

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
                          +D L++    ++ I+   L  +   +  EI R      K NK + 
Sbjct: 58  --------------AVDRLINERLHEEEIKKRKLSVNDLEIEDEIRRV----AKQNKTTL 99

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
           +     +   G N   Y +   K + +  +                              
Sbjct: 100 EKVRKYVEGNGGNWNTYKEDIKKEILKRKLYQSITQ------------------------ 135

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
                    ++    N  + +++   +  +  P+   +
Sbjct: 136 --------ESLKMVDNKEILEYYNANQREFLIPQSIDV 165


>gi|188996490|ref|YP_001930741.1| SurA domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931557|gb|ACD66187.1| SurA domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 290

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
           DK++ + +++   L Q    +G+      V   +         +     + F  +L   G
Sbjct: 63  DKEVEEKIINSFLLAQQARKMGISVSPQEVDNAVLNIA---KANGINDLETFKKKLEDSG 119

Query: 146 INEKEYIDHYTKMLSRTDVV 165
           I+  +  +   + +    ++
Sbjct: 120 ISYSKLKEFLARDMLANRLL 139


>gi|119504685|ref|ZP_01626764.1| hypothetical protein MGP2080_13803 [marine gamma proteobacterium
           HTCC2080]
 gi|119459707|gb|EAW40803.1| hypothetical protein MGP2080_13803 [marine gamma proteobacterium
           HTCC2080]
          Length = 316

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 52/153 (33%), Gaps = 11/153 (7%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLK-KGKKFIQ---LAEE 302
           S+  ++A +E+ K+ +  P   +   +     ++ +A    + ++ +G    +   L + 
Sbjct: 157 SDSAVEAAFEERKDTFREPARVSFSHVFLGEVSKGDATTVLERVQSEGLPPAEAIRLGKA 216

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF----TPVIHGSFGYVIAHVSNIKP 358
                  I+L             A S+ +L   G         I   +G  + ++ +  P
Sbjct: 217 FLSGFHFINLSWPDVHSRLGREFAASLEALL-PGQPMNIWLGPISSVYGQHLVYLESFAP 275

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                  EV   +   ++     + V     ++
Sbjct: 276 EREQRIDEVADKLRWDLKAEAEKQAVDSAVTKV 308


>gi|224025971|ref|ZP_03644337.1| hypothetical protein BACCOPRO_02722 [Bacteroides coprophilus DSM
           18228]
 gi|224019207|gb|EEF77205.1| hypothetical protein BACCOPRO_02722 [Bacteroides coprophilus DSM
           18228]
          Length = 459

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 87/277 (31%), Gaps = 51/277 (18%)

Query: 207 DPSNAVLTQWFE-------KYKDNY--------------------RAPEYKRISYILFDV 239
           + ++  L  ++        +    Y                      PE+K+  Y +   
Sbjct: 35  EVTDTELEAYYSRSPVRSRETPQRYFNHFLFFKLKVADALSMGWDTLPEFKQ-QYHVLSG 93

Query: 240 HEKEKKIEISNDELQAE----YEKNKEKYFSPEIRTVEQLVFP---NQKEADE------- 285
               K + +   E++A     Y++ K +  +      E L  P   +  +A+E       
Sbjct: 94  EML-KPVLVKRQEMKAFFQHQYQEEKSRLLTNTWVRTEFLTLPLSQHPAKAEEDQAQSLM 152

Query: 286 --AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVI 342
             A+ +L+ G  F +L          +  G+     +     LA+ + +L + G  +   
Sbjct: 153 DSAYVALQNGMTFSELTSRYVSQKPQLKSGTMWMPLVGLVPELAERLQNLDE-GVVSRPF 211

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
           +   G  I  + + K      F++    +       +  + V    + L +    G+S  
Sbjct: 212 YSPVGMHIVRLLDRKDG--RDFRDTYPMLQAYC--DRRLDGVPVLNEDLYQAWKDGSSDY 267

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
             S    +  +   L+        G +    P   +L
Sbjct: 268 PASVESTLQWVRDGLLAAWWDARLGTDKHIQPKPGEL 304


>gi|329117232|ref|ZP_08245949.1| putative foldase protein PrsA [Streptococcus parauberis NCFD 2020]
 gi|326907637|gb|EGE54551.1| putative foldase protein PrsA [Streptococcus parauberis NCFD 2020]
          Length = 314

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 75/241 (31%), Gaps = 22/241 (9%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T +V M    +  ++   +       +   +  I+            S+  + + + K 
Sbjct: 29  NTKLVSMKGDTITVTDFYNEAKTTQAAQQSMLSLILSRVFEGQYGKKVSDKEVEKSYNKT 88

Query: 221 KDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            + Y               E  +       +     K E   +   A Y+K  + Y    
Sbjct: 89  AEQYGASFSEALSQAGMTTETYKKQIRTTMLVTYAVKQEAEKELTDANYKKAYDNYTP-- 146

Query: 269 IRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVS 324
             T + +   ++++A +  +  K  G  F  +A++     K   D +  S  K    DV 
Sbjct: 147 KMTTQVITLDDEEKAKKVLEETKAEGANFEDIAKKNTVNEKKKVDYTFDSSDKSLPSDVI 206

Query: 325 LADSIFSLAKKGDFT---PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
              S     +K +             Y I +++  K      ++E K  +   +   K +
Sbjct: 207 KEASKLKAGEKSELISVMDPSTYQKKYYIVNMAK-KEDKKADWKEYKTRLKEIILDEKNN 265

Query: 382 E 382
           +
Sbjct: 266 D 266


>gi|256847527|ref|ZP_05552973.1| peptidylprolyl isomerase [Lactobacillus coleohominis 101-4-CHN]
 gi|256716191|gb|EEU31166.1| peptidylprolyl isomerase [Lactobacillus coleohominis 101-4-CHN]
          Length = 307

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 63/190 (33%), Gaps = 24/190 (12%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAE------- 256
           + S A + + +  YK  Y +     +          + +I+   +    ++         
Sbjct: 55  EVSKADVNKEYNSYKSQYGSSFSAVLQQQNLTEKTFKDQIKSRLLLEAAVRHYSTFSNKA 114

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDIS 311
             K  +KY         +++  ++ +A +    L      K KKF +LA+ +    S+ S
Sbjct: 115 INKQWKKY--EPKVETAEILVGSEDDAKDIISQLDSTSGNKYKKFKKLAKSKSTDTSNKS 172

Query: 312 LGSFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS--F 364
            G     +       D +   + F+L         +    GY + ++         S   
Sbjct: 173 TGGIVPAFDNTSTSVDSAYKKAAFALKTGEYTKEPVKTDNGYQVIYMVKHPAKGAKSAHI 232

Query: 365 QEVKKDIANQ 374
            ++K  I  Q
Sbjct: 233 ADLKTKIVQQ 242



 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 49/169 (28%), Gaps = 32/169 (18%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           G+  V +    K+    + +S K                         K +L  ++    
Sbjct: 8   GNKAVATTSGGKITQDEYYSSMKNTSQ--------------------GKAVLQQMILDKV 47

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L    +  G E     V  E      +  +        F + L ++ + EK + D     
Sbjct: 48  LQ---KQYGKEVSKADVNKEYNS---YKSQYGS----SFSAVLQQQNLTEKTFKDQIKSR 97

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
           L     V  +      +  +  Q K++  +  + + +V +      I  
Sbjct: 98  LLLEAAVRHY--STFSNKAINKQWKKYEPKVETAEILVGSEDDAKDIIS 144


>gi|294887349|ref|XP_002772065.1| protein phosphatase 2c, putative [Perkinsus marinus ATCC 50983]
 gi|239876003|gb|EER03881.1| protein phosphatase 2c, putative [Perkinsus marinus ATCC 50983]
          Length = 688

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 14/99 (14%)

Query: 265 FSPEIRTVEQLVFPNQKEAD----EAFQSLKKGKK-FIQLAEEQGKSLSD-------ISL 312
            +P  R   + V   + EA+         LKK    F +L ++  + LS          L
Sbjct: 588 RNPRDRVRNKQVTRTKTEAENTMMSILADLKKDSSKFPELCKKHSECLSSRKAGNLCGDL 647

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
             F    +      ++ F+L   G+ + +++   G  I 
Sbjct: 648 DWFGHGKMM-AEFEEAAFAL-DVGEMSDLVYSPSGIHII 684


>gi|195401577|ref|XP_002059389.1| GJ18469 [Drosophila virilis]
 gi|194142395|gb|EDW58801.1| GJ18469 [Drosophila virilis]
          Length = 486

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 56/173 (32%), Gaps = 20/173 (11%)

Query: 55  SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA-----TLDQFIEDIGLE 109
                 + E+  + Q+    + +E  + +   K++L+  +         L +   +  L 
Sbjct: 310 ELQQRVRAEIRAMLQRHEGALTAEGLQQLTYTKQVLNETLRLHTPYPFLLRRATREFELP 369

Query: 110 ADHGRVWG---------EIARSPLFHGKDNKFSHDVFV--SRLAREGINEKEYIDHYT-- 156
                +            I R P  + +  +F  D F   +  AR  I+   + +     
Sbjct: 370 KSVFVIARGNNVLIPIAAIHRDPAIYPEPERFDPDRFEAAAVHARTSISFLPFGEGLRGC 429

Query: 157 --KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
             K L++  ++   V  ++  +       +   +  +   +++    +    +
Sbjct: 430 MAKQLAQQQLLVGLVALLQQHSYAPCAETQIPIQYDNRKLLLMPKTDIKLSVE 482


>gi|332185309|ref|ZP_08387058.1| PPIC-type PPIASE domain protein [Sphingomonas sp. S17]
 gi|332015033|gb|EGI57089.1| PPIC-type PPIASE domain protein [Sphingomonas sp. S17]
          Length = 475

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 53/479 (11%), Positives = 126/479 (26%), Gaps = 103/479 (21%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V    +  +            ++  +  V          L  +IL  L+      Q  
Sbjct: 85  AIVNDTVLTGTDLDQRM-----ALAMALNNVTKLSPEDRDRLRMQILRQLIDETLQIQEA 139

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
           +   +      +    AR   F  +  K       + L + G +E+         L+   
Sbjct: 140 KSAEITVTAPEIDQAYAR---FSQQFGKT-PTQMTAFLRQVGSSERSMRRQIEGELAWN- 194

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
                                         Y+         + D     +    E  K  
Sbjct: 195 -----------------------------RYLRKRVEPFINVGDEEVNAIRARLEAAKGT 225

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
               E   +  I    +      E +  ++ A                  Q++       
Sbjct: 226 ----EEYNLKEIFLSAN------EATQQQVFAN---------------ARQII------- 253

Query: 284 DEAFQSLKKGKK----FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                 ++KG++    F +   E      +  LG      +P   L  +  S+ + G   
Sbjct: 254 ----AEIQKGQQPFEYFARSFSEASTRAVNGDLGWVRAAQLP-PELQSAAQSM-QVGQVA 307

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI------TKASEKVKEDYKRLEE 393
             I    G+ I ++++ +   T   ++ +  +               +     D+ +  +
Sbjct: 308 GPIPIPGGFSILYLTDKRQVLTADPRDSRLSLKQLTIKFPAGTTQAQATARAADFAKATQ 367

Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
            +     ++ ++   K   +D   V               P +E LL    G+  P    
Sbjct: 368 AIRGCGDVERVATSLKAEVVDNDQVTI--------RQLPAPLQEILLKMQIGQATPPFGS 419

Query: 454 HTVALPDGSYMWVQIKESIPAR---DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
                P+     + + +    R       +++   V++    ++  +++       V+E
Sbjct: 420 -----PEQGVRSLVLCDREEPRSGNLPTSDQIQNQVEQQRVNLRANQKMRDLRRDAVIE 473


>gi|298387000|ref|ZP_06996554.1| membrane protein [Bacteroides sp. 1_1_14]
 gi|298260150|gb|EFI03020.1| membrane protein [Bacteroides sp. 1_1_14]
          Length = 330

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 71/233 (30%), Gaps = 48/233 (20%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
               V  V  + +  S    + KQEL  +              +  +  K+LD+L+    
Sbjct: 21  NKEIVAEVNDETILLSDLSEASKQELFDLLNM-----------AYEIKSKVLDDLIKKKL 69

Query: 99  LDQFIEDIGLEAD-------HGRVWGEIARSPLF-HGKDNKFSHDVFVSRLAREGINEKE 150
           LD+  +   + A+         R    +     F    DN+ +           G + K 
Sbjct: 70  LDKEAKKQNMTAEQYLELYVDMRTGTNLDSIKAFYKLADNQVNIVRSQLY----GSSPKT 125

Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
                T    +  +  +F          + Q     +   S+   +   +    +     
Sbjct: 126 MEGELT---LKNKLRSIF----------IQQLVDSLYSKASIKKYIFPPKQPKCVIT--- 169

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
             L  ++    D Y       +S+I+      E+ +      LQ  Y+K K++
Sbjct: 170 -DLCVYYRGNMDAY-------VSFIVASDFTCERCVAF-ERTLQRIYDKYKDR 213


>gi|269467952|gb|EEZ79687.1| parvulin-like peptidyl-prolyl isomerase [uncultured SUP05 cluster
           bacterium]
          Length = 298

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ---------- 288
            + K  ++EIS+   +   +  K K    +   + Q+   +  + +   Q          
Sbjct: 126 ANVKLTQVEISDALKKNSNDSKKLK----QQIKIAQIAISSIDQTNSLLQSKDELIKQFL 181

Query: 289 -----SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                 +  G  F  LA+   +  S       G   K+ +P      ++  L KK + + 
Sbjct: 182 LDLSDKINNGTSFSSLAKLYSQDPSYKNGGESGWLDKDRLP-PIFKQNLQGL-KKNELSK 239

Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
               + G+ I    N +   T     +K  +  + + T
Sbjct: 240 PFKTAQGWRIIKNINKRNVDTH-LASIKAQLIQKKKNT 276


>gi|326433435|gb|EGD79005.1| hypothetical protein PTSG_01976 [Salpingoeca sp. ATCC 50818]
          Length = 6230

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 55/485 (11%), Positives = 143/485 (29%), Gaps = 71/485 (14%)

Query: 152  IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
             +         D++   V               +  +  +V       +   A AD   A
Sbjct: 5088 EEEDKLGELTADLMRKLVAAGDDEAAQQKLLDAYEEQVATVR------KQHQAKADMQVA 5141

Query: 212  VLTQW-----FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
             L Q      +++ + +Y+          L +  +      ++ D++QA+ ++       
Sbjct: 5142 ELMQRLTRIRYDETQRHYQRERD-----TLPNHPDIAPPPNVTEDDVQAQIKEM----LL 5192

Query: 267  PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
             + R +  L    +  A+EA Q  + G   +   +      + ++  S  +    D    
Sbjct: 5193 EQQRLIASLEAGKRASAEEADQDGQGGGAVVDFDKRMEAFANSLTNKSTLRGGDKDAEAL 5252

Query: 327  DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
             +  + AKK   +                 +     S   VK  +  ++   +A      
Sbjct: 5253 AAASTTAKKEVAS-----------------RAKVVTS---VKGRLRAKLEKRRA------ 5286

Query: 387  DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
                  E +    + +E ++ E      L  +          E+A     +Q L + F  
Sbjct: 5287 ------EAVGKAKTDEERAQVEASYDSQLATLSSHVTKAVDDELA---RTQQQLVKEFVA 5337

Query: 447  DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
            +D   +   +           ++E    R +   +V   V  D +    A   + K    
Sbjct: 5338 EDKQEEAAQM-----------LREHQ-ERMQ---QVRDKVHSDQRDKVMARIAAQKRLAA 5382

Query: 507  VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
                 +  K  ++       S    ++ ++          DG         ++      +
Sbjct: 5383 QRRRERMQKQQQEKLAAASGSGDGDDEGSKAKGSAAAAVDDGSKHARDLANKVAAASVSD 5442

Query: 567  NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                  + ++  + +  ++E +       + +++ + D+ I   + +    +     +  
Sbjct: 5443 EEAKKRMAELEQAHLKRLEELEAQKQAQMKELSQKV-DAEITEAQQKAEADLQKRREESM 5501

Query: 627  LDGEK 631
               E+
Sbjct: 5502 QAAEQ 5506


>gi|159901476|ref|YP_001547723.1| hypothetical protein Haur_4965 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894515|gb|ABX07595.1| hypothetical protein Haur_4965 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 463

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 37/378 (9%), Positives = 102/378 (26%), Gaps = 70/378 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQ-------------------KIGFVVNSERA 80
           + T+ ++   +V  + +   ++Q +                        +    V +  A
Sbjct: 60  NKTIANIAGVEVTNAEYQQ-YRQIMQAQQAINLAQQIQQYAQYQLQGTEQFATDVTNYIA 118

Query: 81  ----RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
               ++  LD  +L+ L+S   L+      G+      +   +A    F   +   +   
Sbjct: 119 GLKDQNAPLDYAVLNQLISDKILENNAAAEGITVSDEELQQSLAT--KFAPANEVMNPVA 176

Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
                +  G+ +   +                V     +       + F  E  +     
Sbjct: 177 --PVTSTTGLTDTASLTPTPTSTPTLSEASNRVDSAVTTYFGT--LREFIEETSTYGLAT 232

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
           L        A          F  +++  +               +  +K+   +  ++  
Sbjct: 233 LPFDREAFKA----------FVLHQERLQ-----------LMRQKLGEKLVTEDQAIKEV 271

Query: 257 YEKNKEKYFSPEI------RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
           Y   ++ + +  I       TV + +   + + D+    L     F  +     + L+  
Sbjct: 272 YADAQQIFVTANITDPADPMTVTKWL-QAKTKIDDIAAQLTDTASFTDV-----QILNTN 325

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKK------GDFTPVIHGSFGYVIAHVSNIK-PSFTVS 363
              + +           + F + +       G        + G+ I  V+  +       
Sbjct: 326 DNATDNPTTGMQPLSQYAAFGITEPISTQEVGVIGKPYQSTQGWHIILVNQREWRPSQSD 385

Query: 364 FQEVKKDIANQMRITKAS 381
               + +  N+    K +
Sbjct: 386 LTTKRDEAVNKWIEDKRA 403


>gi|313204245|ref|YP_004042902.1| ppic-type peptidyL-prolyl cis-trans isomerase [Paludibacter
           propionicigenes WB4]
 gi|312443561|gb|ADQ79917.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paludibacter
           propionicigenes WB4]
          Length = 451

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 53/185 (28%), Gaps = 15/185 (8%)

Query: 288 QSLKKGK-KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
           + +  G   F  LA    +          LG   +  +     +   F+L      + ++
Sbjct: 202 ERVNSGSSDFSVLARLYSEDSESAKRGGELGFMGRGQLV-PEFSAVAFNLLDPKKVSRIV 260

Query: 343 HGSFGYVIAHVSNIKPSFT-------VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
              FG+ I  +   +                 +        +   + +++ED    E+ +
Sbjct: 261 QTEFGFHIIQLIEKRGDRINCRHILLKPRIAAEDKEKAIHVLDSIANQIREDKITFEKAV 320

Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL--LFRVFGKDDPLSKD 453
              +     +    ++  +              EVA   Y   +  + + F   D  +  
Sbjct: 321 LNFSMDKNTAMNAGLMLNEKSGTSKFEYQDLPPEVAKKVYDMNVGEVSKPFSMIDKSTNK 380

Query: 454 HTVAL 458
             VA+
Sbjct: 381 EVVAV 385


>gi|269958291|ref|YP_003328078.1| hypothetical protein ACIS_00053 [Anaplasma centrale str. Israel]
 gi|269848120|gb|ACZ48764.1| hypothetical protein ACIS_00053 [Anaplasma centrale str. Israel]
          Length = 403

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 56/145 (38%), Gaps = 11/145 (7%)

Query: 219 KYKDNYRAPE---YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
           +   +Y++ E     R+ +           + +S+ +++   ++ K       +  +EQ+
Sbjct: 115 QNGLDYKSVENHLRSRVIWSKMLAARVAPFLAVSDSDVENYVDEAKSA-GLETVLDMEQV 173

Query: 276 VFPNQKEA--DEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADSIFS 331
             P +     D     L KG    ++A    +    +D ++G  +  ++PDV    +   
Sbjct: 174 FVPFKAGRVLDSVLSELNKGVALDKIAARYREHAVYADRAVGVTASAFLPDV---KASLV 230

Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNI 356
            AK G     +    GY++  + + 
Sbjct: 231 RAKVGQVIGPVRIDRGYLVLKLLSK 255


>gi|183222018|ref|YP_001840014.1| hypothetical protein LEPBI_I2660 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167780440|gb|ABZ98738.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 430

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 110/321 (34%), Gaps = 57/321 (17%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFS---VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
              I +  L + FL      +L        S+   SV  + +P   F  + +       Q
Sbjct: 38  FLFILVGTLIITFLPGDAEQSLIGAITGQNSTKAGSVAGRSIPVDYFNAAKRDCYYRYQQ 97

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQF-IEDIGLEADHGRVWGEIARSPLFHGK 128
                   E A++  L      + V    +       +G +     +  E+++       
Sbjct: 98  -----YGRETAQNSELLNSCAYSTVREMYIANDIAAAVGFQVSEISIKREMSKQA----- 147

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
                 ++    +++ G  E++         S T++                    +  +
Sbjct: 148 -----REIHKESVSQAGYGEEDSR-------SLTEIYQQIYRSAPM---------YYRID 186

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
           + +   +  N    P     + A L    ++ K ++R      ++ +    +  E KI I
Sbjct: 187 SATGYALFPNFLDQPLAPSENEAELESEAKRAKISFRLVAISEVNLL----NAVESKINI 242

Query: 249 SNDELQAEYEKNKEK----------YFSPEIRT---VEQLVFPNQKEADEAF-----QSL 290
           ++ ELQ EYEK K++          + S E+R    + +L F  +++  E +     Q +
Sbjct: 243 TDAELQKEYEKEKQEGNLSKDPSGNFVSFEVRKPLLLSKLKFDRKRKEVEVWKGRIGQKI 302

Query: 291 KKGKKFIQLAEEQGKSLSDIS 311
            +      +A+E G+ +  +S
Sbjct: 303 SEPNALDAIAKEAGQPIETVS 323


>gi|114569774|ref|YP_756454.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
           MCS10]
 gi|114340236|gb|ABI65516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
           MCS10]
          Length = 435

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/358 (8%), Positives = 90/358 (25%), Gaps = 91/358 (25%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM--ISQKIGFVV 75
           +V+  + F+    +    + +       V  + +      N  +  +    +SQ     +
Sbjct: 20  IVLSLLAFVAPMCATNAHAQTTEGVAALVNDEPITTVDVRNRMRLIIASTGMSQIDEGTL 79

Query: 76  NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
           +        +  + +  LV      Q   +  +E     +   +                
Sbjct: 80  SR-------IQDQAMRGLVDEHLQLQAASEYDIEVSDAEITNSLLDL------------- 119

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
                                   +   ++          + L  Q +        + + 
Sbjct: 120 ------------------ADRNNTTIDVIIQDLQSSGVDVSTLRHQLEA------EIAWQ 155

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
           ++ N    +    S   +    E+   +   P+++    +       +++  I       
Sbjct: 156 IIVNGRYGSRIRISEQQIELALERLAASASQPQFRIFEMLFEVPGPGQEEQTI------- 208

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
                         R +                 L++G  F +LA +   + S  + G  
Sbjct: 209 -------------QRVI------------TVMNQLQQGATFPELARQFSDAPSAANGGDI 243

Query: 316 SKEYIPDVSLADSIFSLAKK-----------GDFTPVIHGSFGYVIAHVSNIKPSFTV 362
              +I    L   + ++  +           G  +  I    G+++  +   +   T 
Sbjct: 244 --GWITASQLQPEVAAIMPQMRGQYDQSGGRGALSNPIEVPGGFMVIALVGARDGTTT 299


>gi|21673541|ref|NP_661606.1| hypothetical protein CT0711 [Chlorobium tepidum TLS]
 gi|21646651|gb|AAM71948.1| lipoprotein, putative [Chlorobium tepidum TLS]
          Length = 450

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           +  +F V+LF   ++ G S+     S S     V   ++        +++          
Sbjct: 4   ITSLFFVLLFA--ILVGCSEKSAQESNSGVAAVVNGVEITNRQIDYFYQRT--------- 52

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE 109
            +       S  L ++IL +L+    L    +++ L+
Sbjct: 53  AMPGMSAEDSANLKRRILSDLIRIELLAGKAKEMKLD 89


>gi|195977800|ref|YP_002123044.1| foldase protein PrsA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|226712006|sp|B4U214|PRSA_STREM RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|195974505|gb|ACG62031.1| foldase protein PrsA precursor [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 333

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 72/242 (29%), Gaps = 30/242 (12%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           V+ M    +  S+   +       +   ++ +V            S     + + K  + 
Sbjct: 32  VITMKGDTISVSDFYNETKNTEISQRAMLNLVVSRVFEDQYGKKVSKKKTEEAYNKSAEQ 91

Query: 224 Y----------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
           Y                      R + ++    ++  K E+++ + +  YE    +  + 
Sbjct: 92  YGASFSAALAQSGLTTDTYKRQIRSAMLVEYAVKEAAKKELTDADYKKAYESYTPEMTT- 150

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
                + +   N++ A      +K  G  F  +A+E+  +        F        +  
Sbjct: 151 -----QVITLDNEETAKAILGEVKAEGADFAAIAKEKTTAADKKVDYKFDSGDTKLPADV 205

Query: 327 DSIFSLAKKGDFT------PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
               S  K+GD +              + I  V+  K      +++ KK +   +   K 
Sbjct: 206 IKAASGLKEGDISEVVSVLDPATYQNKFYIVKVTK-KAEKASDWKKYKKRLKEIVLAEKT 264

Query: 381 SE 382
             
Sbjct: 265 QN 266


>gi|163868025|ref|YP_001609229.1| peptidyl-prolyl cis-trans isomerase [Bartonella tribocorum CIP
           105476]
 gi|161017676|emb|CAK01234.1| Peptidyl-prolyl cis-trans isomerase [Bartonella tribocorum CIP
           105476]
          Length = 322

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 17/125 (13%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           VV+V    +         +     + QK G            L  +    L+     +  
Sbjct: 45  VVTVNGNPITNYDIQR--RVAFLRLQQKQGS-----------LAAQAKKELIDEELKNIE 91

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
           I+   +E  +  V         F  ++N  + D     L +  I  + + D+    +   
Sbjct: 92  IKRRNIEVSNDEVNRAFEN---FATQNN-MTVDQLNQILIQNDITVQHFKDYIRGQIGWG 147

Query: 163 DVVGM 167
            +V  
Sbjct: 148 RLVSA 152


>gi|291550023|emb|CBL26285.1| PPIC-type PPIASE domain [Ruminococcus torques L2-14]
          Length = 351

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 77/229 (33%), Gaps = 14/229 (6%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
           +  ++  ++         S    D       E +      + +       D S+ V    
Sbjct: 85  EEQTKKRILENLENMYLVSQHASDYDVALTEEEQQA----IKDAAAKFGEDNSDDVKKVV 140

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL-QAEYEKNKEKYFSPEIRTVEQL 275
               ++  +  E   IS  +    E      +S+++  Q   +     Y + +     Q 
Sbjct: 141 SGDEEEVAKVLELMTISNKMETAMEAGVDENVSDEDAAQKSMQYLLFSYTTTDDSGKSQT 200

Query: 276 VFPNQKEA-----DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
           +  ++KEA           LK G+    +A   G +    +    S+   PD  L  +  
Sbjct: 201 LSDDEKEALKTTAQAFDDRLKGGEDMETVASAAGLTAQTATFD--SESTSPDKDLIAAAD 258

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
           +L  +GD T +I    G  IA ++++           K+ I ++ +  +
Sbjct: 259 ALTNEGDVTDIIETENGIYIAKLTSLLDREAT--DSKKESIVSERKQEQ 305


>gi|170585658|ref|XP_001897599.1| parvulin-type peptidyl-prolyl cis-trans isomerase, Bm parvulin
           [Brugia malayi]
 gi|158594906|gb|EDP33483.1| parvulin-type peptidyl-prolyl cis-trans isomerase, Bm parvulin
           [Brugia malayi]
          Length = 95

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 6/53 (11%)

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357
             LG  ++  +   +  D+ F+L            P +   FGY I  V   K
Sbjct: 44  GDLGWMTRGSMVG-TFQDAAFALPNSTVDRPVYTDPPVRTQFGYHIIMVEAKK 95


>gi|156083549|ref|XP_001609258.1| peptidyl-prolyl cis-trans isomerase [Babesia bovis T2Bo]
 gi|154796509|gb|EDO05690.1| peptidyl-prolyl cis-trans isomerase, putative [Babesia bovis]
          Length = 187

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           E   +     LG FS+E +   S +++ F+L + G+ + ++    G  I +
Sbjct: 136 ECSSASKGGDLGFFSREQM-QASFSNAAFNL-QVGEISDLVDSDSGIHIIY 184


>gi|312126469|ref|YP_003991343.1| hypothetical protein Calhy_0216 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776488|gb|ADQ05974.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 229

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 34/185 (18%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSFINSWKQELGMIS- 68
           KI + +  +  ++ G+  A +S++            V   K+       ++  E      
Sbjct: 5   KILIGICSLA-VLIGIVAAGWSLASKKELPKDVAAVVNGHKIYKKDLDMAYGLEELRYEN 63

Query: 69  -----QKIGFVVNSERARSVG------LDKKILDNLVSGATLDQFIEDIGLEAD-HGRVW 116
                +++      + A+ +         ++ILD ++    L    +  G E        
Sbjct: 64  AKASFEELKNKYGDDVAKKLEGSLRKKTKQEILDEMIERLVLYDEAKKEGCEVSVDEAKA 123

Query: 117 GEIARSPLFHGK-----------DNKFSHDVFVSRLAREGINEKEY----IDHYTKMLSR 161
                                  + K + ++  S L + GI+E EY    I  Y KMLS 
Sbjct: 124 YYNKTQKALQDIISGKIATDEANNTKKAAELVNSFLRKHGISEDEYKKGLIREYQKMLSI 183

Query: 162 TDVVG 166
              + 
Sbjct: 184 QKYLQ 188


>gi|196230323|ref|ZP_03129186.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
           flavus Ellin428]
 gi|196225920|gb|EDY20427.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
           flavus Ellin428]
          Length = 318

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 40/150 (26%), Gaps = 17/150 (11%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA--RSVGLDKKILDNLVSGATLD 100
              V    + +       +       Q+    +  +    R   +    ++ L+    + 
Sbjct: 31  AAVVNSDIITYKQ----VRDLTAAKEQQAHDTLQDQALTKRIKEVRTAAVNELIDRQLIL 86

Query: 101 QFIEDIGLEAD----HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
           Q  +  G           +   I     FHG     +   F+  L  +G++ + + +   
Sbjct: 87  QDFKSKGYSIPEHFIDDEIEALIKS--RFHG-----NRPAFLRALQAQGLSLQRFSEIQR 139

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
             +   ++      G      +      + 
Sbjct: 140 DNIIVQEMRKQAAKGATEQPTVEKVNAAYR 169



 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 72/193 (37%), Gaps = 18/193 (9%)

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF-SPEIRT 271
           L ++ E  +DN    E ++          K    + + +++ A Y  +       PE   
Sbjct: 131 LQRFSEIQRDNIIVQEMRK-------QAAKGATEQPTVEKVNAAYRPSAALASSQPEQMR 183

Query: 272 VEQLVFPNQKEA-----DEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDV 323
           +  ++     E      +   Q L +G +F  LA    +  S       G   +  I + 
Sbjct: 184 LRVIMVHGNDEGQRKFMENIRQKLTEGAEFGDLARMYSEDSSQETYGEWGWIDRRTI-NE 242

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
           +L  + F+L K G+ +P+I     + + + +  K + T +  E+  +    +   +  + 
Sbjct: 243 TLTKAAFAL-KVGETSPIIEQGGNFYLLNCAAKKGAVTRTVNELGGNTPTTLVKGERQQM 301

Query: 384 VKEDYKRLEEFLA 396
           V +  ++L     
Sbjct: 302 VSDWLQKLRRKAY 314


>gi|312127370|ref|YP_003992244.1| hypothetical protein Calhy_1155 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777389|gb|ADQ06875.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 233

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 23/152 (15%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWK-QELGMISQKIGFVVNSERARSVGLD-------KKIL 90
            +  V  V  +K+       ++  +E   +SQK  +    ++ ++  L        K +L
Sbjct: 47  DNRVVAVVNGEKIYKKDLEIAYALEEASYLSQKESYQKLLKKYKASFLKPPVQKTKKDVL 106

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARS-PLFHGKDN----------KFSHDVFVS 139
           ++++    L Q  +  G             ++        +          KF++DV   
Sbjct: 107 NSMIENLLLLQAAKKEGYFVSEKEAKDYYEKTKKTMQDVMSGKISGYVESVKFANDVIEK 166

Query: 140 RLAREGINEKEY----IDHYTKMLSRTDVVGM 167
            +   GI  +EY    I+    MLS   ++  
Sbjct: 167 LIKGWGITREEYDRKAIEQTRNMLSIQKLLNA 198


>gi|146295682|ref|YP_001179453.1| hypothetical protein Csac_0639 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409258|gb|ABP66262.1| hypothetical protein Csac_0639 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 236

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 23/152 (15%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMIS------QKIGFVVNSERARSV--GLDKKIL 90
            +  V  V  +K+        +  E           QK+     +   +       K +L
Sbjct: 47  DNRVVAVVNGEKIYKKDLEIVYALEQASYLSQKESYQKLLKKYKASFLKPPVQKTKKDVL 106

Query: 91  DNLVSGATLDQFIEDIGLEADHGR-----------VWGEIARSPLFHGKDNKFSHDVFVS 139
           ++++    L Q  +  G                  +   I+       +  KF++DV   
Sbjct: 107 NSMIENLLLLQAAKKEGCIVSEKEAKDYYEKTKKTIQDVISGKISGDVESVKFANDVIEK 166

Query: 140 RLAREGINEKEY----IDHYTKMLSRTDVVGM 167
            + R GI  +EY    I+    MLS   ++  
Sbjct: 167 LIKRWGITREEYDKKVIEQTRNMLSIQKLLNA 198


>gi|301165392|emb|CBW24963.1| putative chaperone SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Bacteriovorax marinus SJ]
          Length = 303

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 42/370 (11%), Positives = 106/370 (28%), Gaps = 91/370 (24%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           ++  +++F+ F          +     T        +  S                    
Sbjct: 3   QLIFLIIFLTF------SQTHAKLLDKTAAVFNDTVITLSQIERIQNNIASR------RN 50

Query: 75  VNSERARSVGL-DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
           ++    +     + +IL+ ++    + + + +IG   +  +V  EI        K    S
Sbjct: 51  ISPLIYKKQKYTNSEILELMIERLLIREKLSEIGYIRNDEQVEAEINNIE----KRLGLS 106

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
               +S L    ++  EY +   +                                 +++
Sbjct: 107 RSQLLSFLKSNNMSFDEYFEIIRE---------------------------------TIE 133

Query: 194 YIVLNNRHVPAIADPSNAVLTQW-FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
           + + N R +  +   ++  +  + ++  KD   A +Y  + + L +   K+  + I    
Sbjct: 134 FNIFNGRVIRPLISITDQEVKNYFYKTSKDKTLAFKYTIVDFSLEETKMKKGMLNIFPAT 193

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
           L+                 V  ++                 K F          +    L
Sbjct: 194 LEKF--------------QVNGVL----------------PKNFE--------DVQTNVL 215

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           G  +++ + +     ++     +G FT  I     Y +  V       +  +   K  I 
Sbjct: 216 GDITEDGLTNNL--KALLKNTDEGKFTKPIKLGDTYHVFFVKKKDLVESEIYLRAKDQIK 273

Query: 373 NQMRITKASE 382
            ++   +A E
Sbjct: 274 GKLMGEQAGE 283


>gi|313225620|emb|CBY07094.1| unnamed protein product [Oikopleura dioica]
          Length = 1487

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 73/522 (13%), Positives = 166/522 (31%), Gaps = 51/522 (9%)

Query: 113  GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS--RTDVVGMFVG 170
             R    I  SP     D +F        L+    + ++       +L+  +  +  +   
Sbjct: 902  RRAAETIQNSPKMLRSDGQFD-----EALSNLQRDSEDLEFKAEDILTDYKQMIKELSEA 956

Query: 171  GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
            G    ++ L    +F     S +  V  ++        +   L        +  +  E  
Sbjct: 957  GQSAQDVQLK-LDQFASSLESCENSVTASKEKQVATKGTIRTLEN------EIVKIEETV 1009

Query: 231  RISYILFD-VHEKEKKIEISNDELQAEYEKNKEKYFSPEIR--TVEQLVFPNQKEADEAF 287
              +    D + +     ++ N+EL+   E++++     + +   V++     ++ A  A 
Sbjct: 1010 IATSEDLDSIKQLADAQDLKNEELRKLAEQSEQSIEDIQRKSEEVQEKAQQARETAQNAK 1069

Query: 288  QSLKKGK-KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
              ++    K  +L E+    Q   +   +      +     +  D++ +  +       I
Sbjct: 1070 DEMENSMIKLEKLKEDLKMIQSDDVKATTDRILEAKRKAQEARQDALEAKERAMKLYEKI 1129

Query: 343  HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
                      + NI   F    Q+V +    ++   +A++  K+    +  F A    +D
Sbjct: 1130 KND-----VRIPNIGDLFDK--QDVHE--KAKLIKEEAADLQKKVDHLMNRFEAKKNDLD 1180

Query: 403  E----ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
            E     +   +     L   D     + G +  +    + L+  +  K + L KD    +
Sbjct: 1181 ESTEMAAEEYEKGREYLNKADRLLAQLDGAKHTSQ-NSKALIDELLAKAERLKKDLGNVM 1239

Query: 459  PDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEV-----SSKANQLVLEYS 511
              G+     I E    + + L+  E      +D         +     + KAN++  +  
Sbjct: 1240 AAGN-----IDEIDSDQIQSLDALESRVKTVEDLHANLENNVLMIYSEAEKANEVAQKLK 1294

Query: 512  KEGKNFRDIG---KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
                   D     K     +L   Q    D ++K    D I   F+   E +      + 
Sbjct: 1295 DSSSQAFDDAENNKEKAEKILQGVQEAIEDVKSKNGDSDKIQNAFAAKTEEINTAKDNSE 1354

Query: 569  LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
              + + K   +KV   +     I  L   +    L  ++  +
Sbjct: 1355 SVFQMAKEAETKVKESETALDEIKKLVNDIKSRKLPEIVTDI 1396


>gi|146077632|ref|XP_001463318.1| PPIase [Leishmania infantum JPCM5]
 gi|134067402|emb|CAM65675.1| putative PPIase [Leishmania infantum JPCM5]
          Length = 115

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 284 DEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
            +  QS+++G+  F + A ++    S      LG F    +   S  D+  SL + G  +
Sbjct: 42  QKWRQSIEEGRVTFEEAARQRSDCSSYARGGDLGVFGPGEMMK-SFEDATKSL-EVGHVS 99

Query: 340 PVIHGSFGYVIAH 352
            ++    G  I  
Sbjct: 100 GIVVTDSGVHIIK 112


>gi|225868897|ref|YP_002744845.1| foldase protein PrsA precursor [Streptococcus equi subsp.
           zooepidemicus]
 gi|259534750|sp|C0MCT3|PRSA_STRS7 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|225702173|emb|CAW99882.1| foldase protein PrsA precursor [Streptococcus equi subsp.
           zooepidemicus]
          Length = 333

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 72/242 (29%), Gaps = 30/242 (12%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           V+ M    +  S+   +       +   ++ +V            S     + + K  + 
Sbjct: 32  VITMKGDTISVSDFYNETKNTEVSQRAMLNLVVSRVFEDQYGKKVSKKKTEEAYNKSAEQ 91

Query: 224 Y----------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
           Y                      R + ++    ++  K E+++ + +  YE    +  + 
Sbjct: 92  YGASFSAALAQSGLTTDTYKRQIRSAMLVEYAVKEAAKKELTDADYKKAYESYTPEMTT- 150

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
                + +   N++ A      +K  G  F  +A+E+  +        F        +  
Sbjct: 151 -----QVITLDNEETAKAILGEVKAEGADFAAIAKEKTTAADKKVDYKFDSGDTKLPADV 205

Query: 327 DSIFSLAKKGDFT------PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
               S  K+GD +              + I  V+  K      +++ KK +   +   K 
Sbjct: 206 IKAASGLKEGDISEVVSVLDPATYQNKFYIVKVTK-KAEKASDWKKYKKRLKEIVLAEKT 264

Query: 381 SE 382
             
Sbjct: 265 QN 266


>gi|163789037|ref|ZP_02183481.1| peptidylprolyl isomerase [Flavobacteriales bacterium ALC-1]
 gi|159875701|gb|EDP69761.1| peptidylprolyl isomerase [Flavobacteriales bacterium ALC-1]
          Length = 202

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 286 AFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
           A++ LKKGK F ++A +        D  LG F +  + +    ++I    KK +   V  
Sbjct: 116 AYKELKKGKTFSEVANKYSMDPGSKDGDLGWFPEGRMIER-FENAIRE-HKKDEIFQVSD 173

Query: 344 GSFGYVIAHVSNIKPSFTVSFQ 365
            S  +    + N        ++
Sbjct: 174 QSRKWHFIILKNHDEREAKIYE 195


>gi|39936127|ref|NP_948403.1| hypothetical protein RPA3064 [Rhodopseudomonas palustris CGA009]
 gi|192291845|ref|YP_001992450.1| SurA domain [Rhodopseudomonas palustris TIE-1]
 gi|39649981|emb|CAE28505.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
 gi|192285594|gb|ACF01975.1| SurA domain [Rhodopseudomonas palustris TIE-1]
          Length = 308

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 52/172 (30%), Gaps = 19/172 (11%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
               S VV V  + +         + +L  +S K                +++L++L+  
Sbjct: 28  GQAQSVVVMVNGEPITNFDIDQ--RSKLNRMSHKADS------------RQQVLEDLIDE 73

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
               +  +  G+      +    +          + S     + LA +GI          
Sbjct: 74  KVKIKEAKKYGVNPSDSDIDSSFSTMAS----RMRMSTAQMTNMLAAQGIRPDTLKSRIR 129

Query: 157 KMLS-RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
             +   + V G F   ++ S   +    +   + ++V+      R V  I  
Sbjct: 130 AEMVWASLVRGRFKDSLQVSEREVQAQLKGGDDTKAVESFEYQLRPVVMIVS 181


>gi|146277165|ref|YP_001167324.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555406|gb|ABP70019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 405

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 18/138 (13%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V  + +    F    +               +    +  L+K+ +D L+         E 
Sbjct: 37  VNDRVITNYEFEQRVR-------------FLTILGATGDLEKQAMDALIDDKIRLDAAER 83

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDV 164
            GL+A   +V         F G+ N  S + FV+ L + G+  + + D     L  R  +
Sbjct: 84  AGLKATESQVTE---GMEEFAGRAN-LSAEAFVAELGKAGVAPETFRDFVHAGLVWRELM 139

Query: 165 VGMFVGGMRPSNLLLDQA 182
              F    RPS   +D+A
Sbjct: 140 RARFGAEARPSETAIDRA 157


>gi|304315629|ref|YP_003850774.1| hypothetical protein Tthe_0101 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777131|gb|ADL67690.1| conserved hypothetical protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 241

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 27/198 (13%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
             V     +  V    +  S F               G  + S+ A    +D  IL+ LV
Sbjct: 59  LQVDKGDIIAKVNNIPIYKSEFELRK-----------GLTLASD-AEISNIDNYILNKLV 106

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSP-LFHGKDNKFSHDVFVSRLAREGINEKEYID 153
                +       L+     +   I +    F   D   ++ +    ++  G+  +EY +
Sbjct: 107 REKVEEHLASSYNLKVSQDEINLYIEKEKKEF--ADYPEANQMLQEMISASGMTSEEYWN 164

Query: 154 HYTKMLSRTDVV------GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
            Y K   +  ++       +   G+R  NL       F  ++   +Y+          A 
Sbjct: 165 TYEKYNVKRLLLFDKLYNTIIENGIRSGNLEKTSNTTFSTQSEYKNYVDNIIEQYVKQAK 224

Query: 208 PSNAVLTQWFEKYKDNYR 225
            S        +KYKD ++
Sbjct: 225 ISIN------DKYKDMFK 236


>gi|224010677|ref|XP_002294296.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970313|gb|EED88651.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 116

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 12/98 (12%)

Query: 265 FSPEIRTVEQLVFPNQKEADEAF----QSLKK---GKKFIQLAEEQ---GKSLSDISLGS 314
            +P  R   Q V  + ++A          +K+      F + A E+   G   ++  LG 
Sbjct: 18  RNPVSRRTGQTVTLSPQDALAELKVYEAKIKEEGVDGSFPRYAGERSDCGSFQNNGDLGF 77

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           F +  +      D+ F+L + G+ + ++    G  + +
Sbjct: 78  FGRG-MMQKPFEDASFAL-QVGEMSGIVSTDSGLHLIY 113


>gi|254384868|ref|ZP_05000204.1| lipoprotein [Streptomyces sp. Mg1]
 gi|194343749|gb|EDX24715.1| lipoprotein [Streptomyces sp. Mg1]
          Length = 210

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 45/153 (29%), Gaps = 7/153 (4%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           S     T   VG Q++  S+         G    +     ++  A +  L++  L+ ++ 
Sbjct: 29  SDPRPGTAAVVGGQRITTSALQAQVNDVRG---AQDRSEQSAPAAGTARLERMKLNKMIQ 85

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L++  +D G+      +      +            +  ++   R  +   +  +  
Sbjct: 86  LRILEETAKDAGITVSPREIEDVRKETT--QQSGGAAKMEQ-LALAQRLPVAPDQIDEDI 142

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
              L    +   F         L   A   + E
Sbjct: 143 RFQLLLGKIKEKFGDDAFVP-ALTKAAGALHIE 174


>gi|332558337|ref|ZP_08412659.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides WS8N]
 gi|332276049|gb|EGJ21364.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides WS8N]
          Length = 405

 Score = 45.8 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V  + +    F    +               +    +  ++K+ +D L+         E 
Sbjct: 37  VNDRVITNYEFEQRVR-------------FLTILGATGDVEKQAMDALIEDKIRFDAAEQ 83

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDV 164
            GL+A   ++         F G+ N  S + F + L + G+  + + D     L  R  +
Sbjct: 84  AGLKATEEQIKE---GMEEFAGRAN-LSAEQFAAELGKAGVAVETFRDFVHAGLIWRELM 139

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
              F    RP+   +D+A        S+  ++
Sbjct: 140 RAKFGAVARPTETAIDRAITRQTSRASIRLLL 171


>gi|73540631|ref|YP_295151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
 gi|72118044|gb|AAZ60307.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 55/147 (37%), Gaps = 15/147 (10%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLS 308
           +  +   ++ N  ++ S E   V  +V  ++ +A E    L+     F ++A E   + +
Sbjct: 109 DAAVHEYFQLNSPRFDSIE---VSHIVVDSEGKAKELISYLQDDPDSFAEMAREHSIADT 165

Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 +G   +  +    +   +F+ A+ GD       +       V  ++     +  
Sbjct: 166 RERGGDIGKVLRGSL-KTDIEAKVFN-AEAGDLLGPFPAAD-RSFFEVFLVRAKHPATLD 222

Query: 366 -----EVKKDIANQMRITKASEKVKED 387
                EV++ +  +  + +A E V E 
Sbjct: 223 SDVAVEVRRLLREEWLMARAQEHVIEA 249


>gi|303289267|ref|XP_003063921.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454237|gb|EEH51543.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 115

 Score = 45.8 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 6/68 (8%)

Query: 288 QSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
             +  G   F  LA +     S      LG F    +   +  D  F+L + G  + V+ 
Sbjct: 46  AEIDAGNVTFADLAAKVSDCSSAKHGGDLGFFGPGKM-QKAFEDGAFAL-EVGAMSGVVD 103

Query: 344 GSFGYVIA 351
              G  I 
Sbjct: 104 SDSGLHII 111


>gi|284989497|ref|YP_003408051.1| hypothetical protein Gobs_0918 [Geodermatophilus obscurus DSM
           43160]
 gi|284062742|gb|ADB73680.1| hypothetical protein Gobs_0918 [Geodermatophilus obscurus DSM
           43160]
          Length = 343

 Score = 45.8 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 16/187 (8%)

Query: 26  LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
            + G++      S       VG ++V       +    L         +  +   R    
Sbjct: 29  ALAGVAGC---RSDPGVAAYVGDERVTVGELRTAVDTRLE-----DPALAEAAAGREDEF 80

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
            + +L  LV     D+F +  G+  D G V   +               +   ++ A +G
Sbjct: 81  TRLVLRRLVEAELYDRFAQRYGVTVDDGDVRARLDELLA------GEDPEAVYAQAASQG 134

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           +   +  +   + + R  V      G+       +    +  +  S+  + L   +VP  
Sbjct: 135 VARADVFETVRQQVLRQRVAES--QGLVRGLSEEELRAAYEEQAPSLAQVRLGYVNVPDQ 192

Query: 206 ADPSNAV 212
                AV
Sbjct: 193 GAADAAV 199



 Score = 44.2 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 11/148 (7%)

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSL 307
           S +EL+A YE+            +  +  P+Q  AD A  +L+     +  +A +   + 
Sbjct: 164 SEEELRAAYEEQAPSLA---QVRLGYVNVPDQGAADAAVATLQADPGAYPAIAAQFPGAT 220

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
           +   + + + + +P   LAD + S A     +  +    G ++  V         SF+EV
Sbjct: 221 TLPEVATRAPDQVP-APLADVVVSAAPNSATSLTLPDLPGVLVVFVGE---PAVPSFEEV 276

Query: 368 KKDIANQMRIT---KASEKVKEDYKRLE 392
           +  +    R      A + V +    ++
Sbjct: 277 RPQLEESARGESDAAAQQLVADVRAGID 304



 Score = 37.7 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 34/118 (28%), Gaps = 3/118 (2%)

Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
           A+  V     +   +  I      +        R  ++      D +    S        
Sbjct: 195 ADAAVATLQADPGAYPAIAAQFPGATTLPEVATRAPDQVPAPLADVVV---SAAPNSATS 251

Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
             + +    +V  V    V   +E    +    +  +      ++A +++   VTV+ 
Sbjct: 252 LTLPDLPGVLVVFVGEPAVPSFEEVRPQLEESARGESDAAAQQLVADVRAGIDVTVNP 309


>gi|194692444|gb|ACF80306.1| unknown [Zea mays]
          Length = 306

 Score = 45.8 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 9/92 (9%)

Query: 272 VEQLVFPNQKE---ADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
           V+ L+   +      D     + +G     LA E     S      LG   +  +     
Sbjct: 102 VQHLLVGEKDVRLLVDLEKNIIAEGADLSDLAVEHSLCPSKENGGMLGWVRRGQMV-PEF 160

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            ++ FS              FG+ +  V   +
Sbjct: 161 EEAAFSAPLNKVVR--CKTKFGWHLVQVLAER 190


>gi|242075004|ref|XP_002447438.1| hypothetical protein SORBIDRAFT_06g001060 [Sorghum bicolor]
 gi|241938621|gb|EES11766.1| hypothetical protein SORBIDRAFT_06g001060 [Sorghum bicolor]
          Length = 124

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 288 QSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           Q L     F  LA    +   +     LG+F ++ +      D+ ++L K G+ + ++  
Sbjct: 56  QILSGQANFADLAARHSDCSSARRGGDLGTFGRKQMQKP-FEDATYAL-KVGELSEIVDT 113

Query: 345 SFGYVIA 351
             G  + 
Sbjct: 114 DSGVHVI 120


>gi|153809074|ref|ZP_01961742.1| hypothetical protein BACCAC_03382 [Bacteroides caccae ATCC 43185]
 gi|149128407|gb|EDM19626.1| hypothetical protein BACCAC_03382 [Bacteroides caccae ATCC 43185]
          Length = 515

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSL--KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
           P+  T +  +   +   D  +QSL  +    F +L E   +    +      +       
Sbjct: 136 PQTITAKH-LEEEKNRIDSIWQSLRTQSDLDFARLVEMYSEDKRSM---WLERLQTT-SE 190

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
             +  FSL+  G+ +       G  I  V + K     S+ EV + +A ++   +  +K 
Sbjct: 191 FENVAFSLS-TGEISHPFFTPEGLHIIKVIDRKE--NPSYGEVYEKLAERLIRKEGVDKA 247

Query: 385 KEDY 388
            E  
Sbjct: 248 TETI 251


>gi|323453848|gb|EGB09719.1| hypothetical protein AURANDRAFT_16091 [Aureococcus anophagefferens]
          Length = 116

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 9/89 (10%)

Query: 265 FSPEIRTVEQLVFPNQK-EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
            + E+R     +        ++ F+ L K +       + G +     LG F +  +   
Sbjct: 34  ATDELRIARSKLLAAPSYRREDLFKELAKAQS------DCGSAKKGGDLGFFRRGKM-SP 86

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
               + F+L   G+ +  +  S G  + +
Sbjct: 87  PFEVAAFNL-DVGELSKTVASSSGVHLIY 114


>gi|307266612|ref|ZP_07548142.1| conserved hypothetical protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918343|gb|EFN48587.1| conserved hypothetical protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 240

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 13/129 (10%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           ++    +  V    +  + F               G  + SE  +   ++  +L  LV  
Sbjct: 60  INEGDIIAEVNGIPIYKNEFELRK-----------GLTLASE-GQVNDINNFVLSKLVRE 107

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
              +       L+   G +   + +      K++          ++  G+   EY + Y 
Sbjct: 108 KVKEYLAMKYNLKVSEGEINSYLEKEKQ-QFKESPEVDKKLKELISASGMTYDEYWNDYE 166

Query: 157 KMLSRTDVV 165
           K   +  ++
Sbjct: 167 KYNVKRMLL 175


>gi|302657689|ref|XP_003020561.1| hypothetical protein TRV_05348 [Trichophyton verrucosum HKI 0517]
 gi|291184406|gb|EFE39943.1| hypothetical protein TRV_05348 [Trichophyton verrucosum HKI 0517]
          Length = 205

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/132 (10%), Positives = 35/132 (26%), Gaps = 39/132 (29%)

Query: 258 EKNKEKYFSPEIRTVEQLVFP-----------------NQKEADEAF----QSLKKGK-- 294
           +++              L+                   ++ EA E      Q ++ G+  
Sbjct: 58  DRHGASGQGEGKIRASHLLIKHRESRRPSSWRESEITRSKDEAIEILRNHKQRIQSGEAS 117

Query: 295 --KFIQLAEEQGKSLSDISL------------GSFSKEYIPDVSLADSIFSLAKKGDFTP 340
                    +   +     L            G F +  +       + F+L K G+ + 
Sbjct: 118 LGDIATSESDCSSARKRGDLQHKAWVTDKSYSGFFGRGEM-QAEFEQAAFAL-KVGEVSD 175

Query: 341 VIHGSFGYVIAH 352
           ++  + G  +  
Sbjct: 176 IVETASGVHLIE 187


>gi|225710940|gb|ACO11316.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Caligus
           rogercresseyi]
          Length = 151

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 27/112 (24%)

Query: 265 FSPEIRTVEQLVFP-----------------NQKEADEA----FQSLKKG-KKFIQLAEE 302
              E      L+                   +++EA        + +K G +    LA  
Sbjct: 38  ADAEEVQASHLLVKHRDSRRPSSWREENITRSKEEALSILNGYAEKIKSGAETLESLAST 97

Query: 303 QG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
                 +     LG F ++ +      D+ F+L K G+ +  I    G  + 
Sbjct: 98  YSDCSSAKRGGDLGPFGRKQMQKP-FEDAAFAL-KVGEMSEAISTDSGVHLI 147


>gi|195611718|gb|ACG27689.1| isomerase [Zea mays]
          Length = 306

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 9/92 (9%)

Query: 272 VEQLVFPNQKE---ADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
           V+ L+   +      D     + +G     LA E     S      LG   +  +     
Sbjct: 102 VQHLLVGEKDVRLLVDLEKNIIAEGADLSDLAVEHSLCPSKENGGMLGWVRRGQMV-PEF 160

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            ++ FS              FG+ +  V   +
Sbjct: 161 EEAAFSAPLNKVVR--CKTKFGWHLVQVLAER 190


>gi|297544426|ref|YP_003676728.1| hypothetical protein Tmath_0987 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842201|gb|ADH60717.1| conserved hypothetical protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 48/162 (29%), Gaps = 18/162 (11%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
             +     +  V    +  + F               G  + S   ++  +D  IL  L+
Sbjct: 59  LQIGEGDIIAEVNGIPIYKNEFELRK-----------GLALASG-VQADNIDDYILQKLI 106

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF--SHDVFVSRLAREGINEKEYI 152
                +       ++     +   I +      + N++  +       +A  G+ E EY 
Sbjct: 107 REKVQEYLASKYNIKVSQNEINAYIEKE---KKEFNEYPEAKKKLNELIAASGMTEVEYW 163

Query: 153 DHYTKMLSRTDVV-GMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           + Y K  +R  ++       +    +   + K+       V 
Sbjct: 164 NTYEKYNARRILLFNKLYNSIIEEGIKRGELKKVEQMTSDVQ 205


>gi|148704971|gb|EDL36918.1| laminin B1 subunit 1 [Mus musculus]
          Length = 1849

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 69/573 (12%), Positives = 169/573 (29%), Gaps = 106/573 (18%)

Query: 113  GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS--RTDVVGMFVG 170
              +   +A+SP                 L   GI  +E  +  TK ++     V      
Sbjct: 1291 NEIKDILAQSPA-------------AEPLKNIGILFEE-AEKLTKDVTEKMAQVEVKLTD 1336

Query: 171  GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNYR 225
                SN    +      E  S+D  V            S+       +T++F+       
Sbjct: 1337 TASQSNSTAGELGALQAEAESLDKTVKELAEQLEFIKNSDIQGALDSITKYFQM-----S 1391

Query: 226  APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
                KR++    D +   ++  ++ D ++    + +  +   +      L        DE
Sbjct: 1392 LEAEKRVNASTTDPNSTVEQSALTRDRVEDLMLERESPFKEQQEEQARLL--------DE 1443

Query: 286  AFQSLKKGKKFIQLAE-----EQGKSLSDISLGS-------------------------- 314
                L+       +A+       G   S+   G                           
Sbjct: 1444 LAGKLQS-LDLSAVAQMTCGTPPGADCSESECGGPNCRTDEGEKKCGGPGCGGLVTVAHS 1502

Query: 315  -FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
             + K    D    D + +LA+    + ++  +       V   +         +K +   
Sbjct: 1503 AWQKAMDFD---RDVLSALAEVEQLSKMVSEA------KVRADEAKQNAQDVLLKTNATK 1553

Query: 374  QMRITKASEKVKEDYKRLEEFL-ALGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEVA 431
            + ++ K++E ++   K++  FL      +D I +   +++ +++P      +++      
Sbjct: 1554 E-KVDKSNEDLRNLIKQIRNFLTEDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRE 1612

Query: 432  AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
             +    Q+   +      +++   + L +         +     D     V   +++  K
Sbjct: 1613 RVETLSQVEVILQQSAADIARAELL-LEEAKRASKSATDVKVTADM----VKEALEEAEK 1667

Query: 492  TVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
                AE+   +A++           +  E +   +   +  + +        ++ R   +
Sbjct: 1668 AQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKAAQ 1727

Query: 541  NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQM 597
            N          V+S            +G     +K   S +          +  + L Q 
Sbjct: 1728 NSGEAEYIEKVVYSVKQNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELLQN 1787

Query: 598  MNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
              K LL        ++  L+ +Y    +   ++
Sbjct: 1788 EAKTLLAQANSKLQLLEDLERKY--EDNQKYLE 1818


>gi|114326497|ref|NP_032508.2| laminin subunit beta-1 [Mus musculus]
          Length = 1834

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 69/573 (12%), Positives = 169/573 (29%), Gaps = 106/573 (18%)

Query: 113  GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS--RTDVVGMFVG 170
              +   +A+SP                 L   GI  +E  +  TK ++     V      
Sbjct: 1276 NEIKDILAQSPA-------------AEPLKNIGILFEE-AEKLTKDVTEKMAQVEVKLTD 1321

Query: 171  GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNYR 225
                SN    +      E  S+D  V            S+       +T++F+       
Sbjct: 1322 TASQSNSTAGELGALQAEAESLDKTVKELAEQLEFIKNSDIQGALDSITKYFQM-----S 1376

Query: 226  APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
                KR++    D +   ++  ++ D ++    + +  +   +      L        DE
Sbjct: 1377 LEAEKRVNASTTDPNSTVEQSALTRDRVEDLMLERESPFKEQQEEQARLL--------DE 1428

Query: 286  AFQSLKKGKKFIQLAE-----EQGKSLSDISLGS-------------------------- 314
                L+       +A+       G   S+   G                           
Sbjct: 1429 LAGKLQS-LDLSAVAQMTCGTPPGADCSESECGGPNCRTDEGEKKCGGPGCGGLVTVAHS 1487

Query: 315  -FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
             + K    D    D + +LA+    + ++  +       V   +         +K +   
Sbjct: 1488 AWQKAMDFD---RDVLSALAEVEQLSKMVSEA------KVRADEAKQNAQDVLLKTNATK 1538

Query: 374  QMRITKASEKVKEDYKRLEEFL-ALGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEVA 431
            + ++ K++E ++   K++  FL      +D I +   +++ +++P      +++      
Sbjct: 1539 E-KVDKSNEDLRNLIKQIRNFLTEDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRE 1597

Query: 432  AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
             +    Q+   +      +++   + L +         +     D     V   +++  K
Sbjct: 1598 RVETLSQVEVILQQSAADIARAELL-LEEAKRASKSATDVKVTADM----VKEALEEAEK 1652

Query: 492  TVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
                AE+   +A++           +  E +   +   +  + +        ++ R   +
Sbjct: 1653 AQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKAAQ 1712

Query: 541  NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQM 597
            N          V+S            +G     +K   S +          +  + L Q 
Sbjct: 1713 NSGEAEYIEKVVYSVKQNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELLQN 1772

Query: 598  MNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
              K LL        ++  L+ +Y    +   ++
Sbjct: 1773 EAKTLLAQANSKLQLLEDLERKY--EDNQKYLE 1803


>gi|21595540|gb|AAH32276.1| Lamb1-1 protein [Mus musculus]
          Length = 984

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 69/573 (12%), Positives = 169/573 (29%), Gaps = 106/573 (18%)

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS--RTDVVGMFVG 170
             +   +A+SP                 L   GI  +E  +  TK ++     V      
Sbjct: 426 NEIKDILAQSPA-------------AEPLKNIGILFEE-AEKLTKDVTEKMAQVEVKLTD 471

Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNYR 225
               SN    +      E  S+D  V            S+       +T++F+       
Sbjct: 472 TASQSNSTAGELGALQAEAESLDKTVKELAEQLEFIKNSDIQGALDSITKYFQM-----S 526

Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
               KR++    D +   ++  ++ D ++    + +  +   +      L        DE
Sbjct: 527 LEAEKRVNASTTDPNSTVEQSALTRDRVEDLMLERESPFKEQQEEQARLL--------DE 578

Query: 286 AFQSLKKGKKFIQLAE-----EQGKSLSDISLGS-------------------------- 314
               L+       +A+       G   S+   G                           
Sbjct: 579 LAGKLQS-LDLSAVAQMTCGTPPGADCSESECGGPNCRTDEGEKKCGGPGCGGLVTVAHS 637

Query: 315 -FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
            + K    D    D + +LA+    + ++  +       V   +         +K +   
Sbjct: 638 AWQKAMDFD---RDVLSALAEVEQLSKMVSEA------KVRADEAKQNAQDVLLKTNATK 688

Query: 374 QMRITKASEKVKEDYKRLEEFL-ALGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEVA 431
           + ++ K++E ++   K++  FL      +D I +   +++ +++P      +++      
Sbjct: 689 E-KVDKSNEDLRNLIKQIRNFLTEDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRE 747

Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
            +    Q+   +      +++   + L +         +     D     V   +++  K
Sbjct: 748 RVETLSQVEVILQQSAADIARAELL-LEEAKRASKSATDVKVTADM----VKEALEEAEK 802

Query: 492 TVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
               AE+   +A++           +  E +   +   +  + +        ++ R   +
Sbjct: 803 AQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKAAQ 862

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQM 597
           N          V+S            +G     +K   S +          +  + L Q 
Sbjct: 863 NSGEAEYIEKVVYSVKQNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELLQN 922

Query: 598 MNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
             K LL        ++  L+ +Y    +   ++
Sbjct: 923 EAKTLLAQANSKLQLLEDLERKY--EDNQKYLE 953


>gi|74181151|dbj|BAE27840.1| unnamed protein product [Mus musculus]
          Length = 1834

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 69/573 (12%), Positives = 169/573 (29%), Gaps = 106/573 (18%)

Query: 113  GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS--RTDVVGMFVG 170
              +   +A+SP                 L   GI  +E  +  TK ++     V      
Sbjct: 1276 NEIKDILAQSPA-------------AEPLKNIGILFEE-AEKLTKDVTEKMAQVEVKLTD 1321

Query: 171  GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNYR 225
                SN    +      E  S+D  V            S+       +T++F+       
Sbjct: 1322 TASQSNSTAGELGALQAEAESLDKTVKELAEQLEFIKNSDIQGALDSITKYFQM-----S 1376

Query: 226  APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
                KR++    D +   ++  ++ D ++    + +  +   +      L        DE
Sbjct: 1377 LEAEKRVNASTTDPNSTVEQSALTRDRVEDLMLERESPFKEQQEEQARLL--------DE 1428

Query: 286  AFQSLKKGKKFIQLAE-----EQGKSLSDISLGS-------------------------- 314
                L+       +A+       G   S+   G                           
Sbjct: 1429 LAGKLQS-LDLSAVAQMTCGTPPGADCSESECGGPNCRTDEGEKKCGGPGCGGLVTVAHS 1487

Query: 315  -FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
             + K    D    D + +LA+    + ++  +       V   +         +K +   
Sbjct: 1488 AWQKAMDFD---RDVLSALAEVEQLSKMVSEA------KVRADEAKQNAQDVLLKTNATK 1538

Query: 374  QMRITKASEKVKEDYKRLEEFL-ALGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEVA 431
            + ++ K++E ++   K++  FL      +D I +   +++ +++P      +++      
Sbjct: 1539 E-KVDKSNEDLRNLIKQIRNFLTEDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRE 1597

Query: 432  AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
             +    Q+   +      +++   + L +         +     D     V   +++  K
Sbjct: 1598 RVETLSQVEVILQQSAADIARAELL-LEEAKRASKSATDVKVTADM----VKEALEEAEK 1652

Query: 492  TVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
                AE+   +A++           +  E +   +   +  + +        ++ R   +
Sbjct: 1653 AQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKAAQ 1712

Query: 541  NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQM 597
            N          V+S            +G     +K   S +          +  + L Q 
Sbjct: 1713 NSGEAEYIEKVVYSVKQNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELLQN 1772

Query: 598  MNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
              K LL        ++  L+ +Y    +   ++
Sbjct: 1773 EAKTLLAQANSKLQLLEDLERKY--EDNQKYLE 1803


>gi|225388228|ref|ZP_03757952.1| hypothetical protein CLOSTASPAR_01963 [Clostridium asparagiforme
           DSM 15981]
 gi|225045696|gb|EEG55942.1| hypothetical protein CLOSTASPAR_01963 [Clostridium asparagiforme
           DSM 15981]
          Length = 309

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 59/199 (29%), Gaps = 34/199 (17%)

Query: 218 EKYKDNYRAPEYKRIS-----YILFDVHEKEKKIEISNDELQAEY--------------E 258
           ++      + E   I      Y           I    +E+   Y              +
Sbjct: 85  DENGIELTSQEKDSIKRLSEQYYGLLSKADRDYIGADQEEVYELYCEYYRADKLVTELTQ 144

Query: 259 KNKEKYFSPEIRTVEQ--LVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSF 315
               +    E + +E   +   N++ A+E     +  G  F  +A++             
Sbjct: 145 DQNLEISDAEAKVIEVLPISVRNRQTAEEVLAQAQAEGADFSAIAKKYSTDGGVAVQMER 204

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQ 374
           ++       L  + F+L +  + + ++  +  + I   +N       ++ E        +
Sbjct: 205 NQNQ---SELEKAAFALEQD-EISGIVEENGAFYILKCTN-------AYDEAATAARKKK 253

Query: 375 MRITKASEKVKEDYKRLEE 393
           +   K +   ++ Y    +
Sbjct: 254 LAQEKKNNAFQKIYAPFAD 272


>gi|58584292|ref|YP_197865.1| parvulin-like peptidyl-prolyl isomerase, SurA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58418608|gb|AAW70623.1| Parvulin-like peptidyl-prolyl isomerase, SurA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 384

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 9/94 (9%), Positives = 26/94 (27%), Gaps = 10/94 (10%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           +  V  + +                      +  ++      L  +IL  L+    +   
Sbjct: 24  IADVNGEPISNLDIEKRINLTH--------SLFGTQSIDKNELKLQILKQLIDEIIIINE 75

Query: 103 IEDIGLEADHGRVWGEIA--RSPLFHGKDNKFSH 134
            + + ++     +   +    +  F  KDN+   
Sbjct: 76  AQRLNIKLSDEELSNAVVLFLTQSFKLKDNEVDQ 109


>gi|325279464|ref|YP_004252006.1| hypothetical protein Odosp_0748 [Odoribacter splanchnicus DSM
           20712]
 gi|324311273|gb|ADY31826.1| hypothetical protein Odosp_0748 [Odoribacter splanchnicus DSM
           20712]
          Length = 278

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 83/263 (31%), Gaps = 25/263 (9%)

Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
           +   E      +   LSR++++     G    + L         +N   +++        
Sbjct: 19  QRTQEPPVAQVFESTLSRSEIIDFIPNGTSSEDSL------LMAQNYIRNWVTQKLLLHK 72

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
           AI + SN  +    +K  ++YR                     EIS ++++  Y KN++ 
Sbjct: 73  AIENLSNEEMN--IQKQVEDYRTSLLIYQYKQKLIAQRLMD--EISEEDIETYYNKNEKN 128

Query: 264 YF--SPEIRTVEQLVFPNQKEADEAF-----QSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
           +   +P I+ V  ++  N     E             +          K     +     
Sbjct: 129 FILPTPIIKAVFFILPKNAPNLKEVKKWFKSDKANDQESLEDYCLTHAKKYDKFNNKWIE 188

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPV----IHGSFGYVIAHVSN-IKPSFTVSFQEVKKDI 371
            +YI ++   D  F+  +K +   V          Y    ++             V+ +I
Sbjct: 189 VKYILNLIPGD--FNTLEK-EILVVKNIEKEDDDNYYFLKINEMRHEQTLAPLDYVRDEI 245

Query: 372 ANQMRITKASEKVKEDYKRLEEF 394
              ++  K  +   +  K++ E 
Sbjct: 246 TLILKNKKKLQFENDLEKQINEE 268


>gi|126462315|ref|YP_001043429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103979|gb|ABN76657.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 435

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V  + +    F    +               +    +  ++K+ +D L+         E 
Sbjct: 67  VNDRVITNYEFEQRVR-------------FLTILGATGDVEKQAMDALIEDKIRFDAAEQ 113

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDV 164
            GL+A   ++         F G+ N  S + F + L + G+  + + D     L  R  +
Sbjct: 114 AGLKATEEQIKE---GMEEFAGRAN-LSAEQFAAELGKAGVAVETFRDFVHAGLIWRELM 169

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
              F    RP+   +D+A        S+  ++
Sbjct: 170 RAKFGAVARPTETAIDRAITRQTSRASIRLLL 201


>gi|326391575|ref|ZP_08213106.1| hypothetical protein TheetDRAFT_2347 [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992405|gb|EGD50866.1| hypothetical protein TheetDRAFT_2347 [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 241

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/198 (11%), Positives = 51/198 (25%), Gaps = 31/198 (15%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           V+    +       +  + F               G    SE  +   ++  +L+ LV  
Sbjct: 61  VNEGDVIAEANGIPIYKNEFELRK-----------GLTFASE-GQVNDINNFVLNKLVRE 108

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY- 155
              +       L+     +   I +      K+   +       ++  G+  +EY + Y 
Sbjct: 109 KVKEYLAMKYNLKVSEDEINSYIEKEKQ-QFKEFPEAEGKLKELISASGMTYEEYWNDYE 167

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
              + R  +       +    +   + K+       V                      +
Sbjct: 168 RYNVKRMLLFDKLYNAIINEGIKNGELKKTDKMTIEVQ-----------------NEYKK 210

Query: 216 WFEKYKDNYRAPEYKRIS 233
           +F+   D Y       I 
Sbjct: 211 YFDNIIDQYVKQAKISID 228


>gi|207109748|ref|ZP_03243910.1| cell binding factor 2 [Helicobacter pylori HPKX_438_CA4C1]
          Length = 137

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
              + +      E+ KKI+I   E+Q  Y  NK++ F  +      ++   + EA     
Sbjct: 23  QALVEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIIS 82

Query: 289 SL------KKGKKFIQLAEEQGKSL------SDISLGSFSKEYIPDVSL 325
            +      KK  KFI+LA             +   LG F K        
Sbjct: 83  EIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQNGSGFF 131


>gi|205371975|ref|ZP_03224793.1| hypothetical protein Bcoam_00386 [Bacillus coahuilensis m4-4]
          Length = 121

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 6/96 (6%)

Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVI 342
             L  G  F  LA EQ         G      F    +    + + +  + K G ++ V 
Sbjct: 2   AELSTGADFESLAREQSTDPYSAEAGGKIGFLFYGNTLYPEEMWEEVKGV-KAGKWSNVF 60

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
                Y I +V  I+   + S +EV   I  ++   
Sbjct: 61  QWGEEYAIVYVHQIEKGTSYSLKEVSGYIERKLAKE 96


>gi|253999544|ref|YP_003051607.1| EpsD family peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           SIP3-4]
 gi|253986223|gb|ACT51080.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Methylovorus sp.
           SIP3-4]
          Length = 305

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 11/100 (11%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
           L +  +   ++G   +            V  +++            L  ++Q I  V N 
Sbjct: 7   LALGLLSVTLFGCGKSDNKPESGQVAAKVDGKEIS-----------LLQLNQVIKNVPNV 55

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
                  + K+ILD L+    +     D   E     V  
Sbjct: 56  SEDNVDAIRKQILDRLIDQQLILNKAYDEKFERTPEVVSA 95



 Score = 40.0 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 71/247 (28%), Gaps = 48/247 (19%)

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLL---LDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
           +D   K +    +    +             +         R        ++ V     P
Sbjct: 60  VDAIRKQILDRLIDQQLILNKAYDEKFERTPEVVSAIETAKRDAITRAYVSKLVATKVKP 119

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            N  +  +FE + + +     +R+ Y L D+          +   Q              
Sbjct: 120 GNQEVKTYFETHPELFT---QRRV-YNLQDIAIAPGANLPGDLAAQ-------------- 161

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
                       K   +  + LK G                +  G+ S     +    D+
Sbjct: 162 --------VEKSKGMQDVAEWLKAG---------------GVKFGASSYSKPAEQIATDA 198

Query: 329 IFSLA--KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           +  L   K G+  P+        +  +    P+  + F + K  I + +  T+  + +K+
Sbjct: 199 LAVLKNLKGGEIVPLTM-DGNVHVVKLIGAVPA-PMDFNQAKPLILSYLTNTQGQQLIKQ 256

Query: 387 DYKRLEE 393
           +  R++E
Sbjct: 257 ELARMKE 263


>gi|315637986|ref|ZP_07893171.1| SurA domain protein [Campylobacter upsaliensis JV21]
 gi|315481834|gb|EFU72453.1| SurA domain protein [Campylobacter upsaliensis JV21]
          Length = 298

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 39/386 (10%), Positives = 101/386 (26%), Gaps = 117/386 (30%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           + ++ K  L++L   F +  ++  +     +S  + V ++ +                  
Sbjct: 23  KGFLMKKILMILL--FFVAIVNAKVL----NSVALVVEKEPITNYDIEQ----------- 65

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
                   +  +     ++ L  L++       I+   +  +   V   I++        
Sbjct: 66  ------TMKLLKLP--REQALAVLINEKMELSQIKQFSIVVNELEVDAAISKI----LTQ 113

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           NK + + F + L  +G N + +  +  K L +  +                         
Sbjct: 114 NKMNLEQFKNSLKAKGQNYELFRHNLKKDLEKRKLYEKIAS------------------- 154

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
                            D S     ++FE  K+ +       +     +     +K++  
Sbjct: 155 -------------MNKTDFSEESAKKFFEANKEKFLFYTSIDVKIYRSNDQAILEKMKAD 201

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
                     N   + +                       LK G                
Sbjct: 202 KKITLKAQNVNLNPHNADPRLL-------------ALLSQLKIG---------------- 232

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
                                      +F+PV++   G+ +  V     +    F+++K 
Sbjct: 233 ---------------------------EFSPVLNSKEGFELYEVMAKGGANVPEFEQIKD 265

Query: 370 DIANQMRITKASEKVKEDYKRLEEFL 395
            + N     +    +++ + +L   L
Sbjct: 266 SVMNVYFNEQRQNYIQDYFDKLRSKL 291


>gi|325110000|ref|YP_004271068.1| hypothetical protein Plabr_3449 [Planctomyces brasiliensis DSM
           5305]
 gi|324970268|gb|ADY61046.1| hypothetical protein Plabr_3449 [Planctomyces brasiliensis DSM
           5305]
          Length = 927

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 76/251 (30%), Gaps = 64/251 (25%)

Query: 30  LSDALFSVSGSSTVVSVGRQKVPFSSFI-NSWKQELGMISQKIGFVVNSERARSVG-LDK 87
           + +  F       +  V  ++   + F+  +++           F +        G  ++
Sbjct: 91  VVETSFGAVSEEDLAEVNNRQQMVNGFLIEAFRTAHEGDENANSFQLQQALFGGNGDPNR 150

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
           + L +L     + +  ++IGL+    +V   I          NK S   F    +R G++
Sbjct: 151 EALMHL----LMLEEAKEIGLDISQTQVKAYID-----RVTSNKLSGRAFREITSRIGLS 201

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGM--------------------------------RPS 175
            ++  D   + +   +   + +  +                                   
Sbjct: 202 GEDLFDLLREQMVAREARAVLMPTLLTSPDDYWTAYQKLNVRQELTVVPIAAESFLDAVP 261

Query: 176 NLLLDQAKRFYFENRSV--------------------DYIVLNNRHVPA-IADPSNAVLT 214
               D+ K  + E + V                     Y+ ++   V + I + ++  + 
Sbjct: 262 KPSEDELKAMFEEYKDVFPNEKEPGAPGFRQPVRVKLGYLEVDYDQVASTIPEVTDEEVA 321

Query: 215 QWFEKYKDNYR 225
            ++E  K+ +R
Sbjct: 322 AYYEANKEQFR 332



 Score = 38.8 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 74/266 (27%), Gaps = 50/266 (18%)

Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
            K +   +  E+              K    D     +  +   +GD +           
Sbjct: 518 AKEETPAKAEEKPAAEGDSAEKKEEPKPETSDKPAEPTATA---EGD-SEPAEEPM---- 569

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMD------- 402
                  P F      +K +IA Q++  K  +K+ E   +   + +++            
Sbjct: 570 --QEEPLPEFRELDDALKAEIAKQLKDDKTLQKMAEMASQARGDMISINAKYAVAPEGEQ 627

Query: 403 ------------EISRREKIVSIDLPLV-----DFAGKDVKGKEVAAIPYKEQLLFRVFG 445
                         ++   +  ++ PL+     + +     G     +    +       
Sbjct: 628 AAAAEEIRKEAQAYAKANGLRYVETPLLSPSELEESEDHPIGGATEPVANPFERTEANTV 687

Query: 446 KDDPLSKDHTVALPDGSYMWVQIKE-------------SIPARDRKLEE--VLTDVKKDW 490
            D   S ++   L    Y   + ++                +     +E  V   V++ W
Sbjct: 688 VDQHFSVNNIEELARQKYRLFEAEDPSTLNRFVHWQVDYRASHVPTWDEEGVQEQVRETW 747

Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKN 516
           +  K  E    +A++++    +  K 
Sbjct: 748 RNTKAQELAKKRADEVLKMLKESDKP 773


>gi|170726976|ref|YP_001761002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
 gi|169812323|gb|ACA86907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
          Length = 270

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 52/156 (33%), Gaps = 17/156 (10%)

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG- 293
           +   +  + K  +   D+    ++ N++K+ +  +  V+ ++     +  +A    K   
Sbjct: 81  VQLLLQTQVKYDDPDEDDCLRYFKNNRDKFTTAPLMEVDHILLAAANDDLDARDDAKSDA 140

Query: 294 -----------KKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
                      K F +LA+      S     SLG  S            +  L + G   
Sbjct: 141 MDIISTLKNDLKLFGELAKHHSVCPSKETGGSLGQISNGQTV-PEFERQLMMLPE-GLAE 198

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
             +   +G  + +V+       + +  V+  +   +
Sbjct: 199 KPLESRYGLHVVNVARKVEGKALDYSLVQDKVRGYL 234


>gi|289613632|emb|CBI59450.1| unnamed protein product [Sordaria macrospora]
          Length = 216

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 14/82 (17%)

Query: 276 VFPNQKEADEAFQSLKKGKKFI---------QLAE---EQGKSLSDISLGSFSKEYIPDV 323
           +   ++EA +  + +KK  +           +LA    +   + ++  LG F +  +   
Sbjct: 102 ITRTKEEARQILEGIKKSMELESESEPISLGKLARTESDCSSARTEGDLGYFGRGEM-QK 160

Query: 324 SLADSIFSLAKKGDFTPVIHGS 345
              D+ F+L K G+ + ++  +
Sbjct: 161 EFEDAAFAL-KPGEISGIVDTA 181


>gi|226323667|ref|ZP_03799185.1| hypothetical protein COPCOM_01442 [Coprococcus comes ATCC 27758]
 gi|225207851|gb|EEG90205.1| hypothetical protein COPCOM_01442 [Coprococcus comes ATCC 27758]
          Length = 347

 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 57/383 (14%), Positives = 111/383 (28%), Gaps = 98/383 (25%)

Query: 9   SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP--FSSFINSWKQEL-- 64
            +  VA I  V          L+      +G  TVV VG +KV    ++F   ++Q    
Sbjct: 2   KKRVVACILAVACIAS-----LNGCGSKFNGQDTVVEVGDEKVTADVANFFARYQQAQFE 56

Query: 65  GMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
              S  +G           +         I+D+L     LD+  +D  +           
Sbjct: 57  TTYSSYLGDDFWGKEVTDGKTYEENYKDSIMDSLEEMYILDEHKDDYKVSLSDDEEKSIE 116

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
             +  F   ++                                         +      +
Sbjct: 117 DAAKKFTDSND-----------------------------------SAAKDAVSGDEKTV 141

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
            +        + ++  +          + S+                   K++ Y+LF  
Sbjct: 142 KKVLELLTLQKKMETAM----TADVDTNVSDEEAA--------------QKKLQYVLFST 183

Query: 240 HEKE---KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
             K    K  ++S+DE                           +K+A++  +     + F
Sbjct: 184 KTKGSDGKSTDMSDDE-----------------------KAEVKKKAEDFQKDAASAEDF 220

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
              A   G S +D++  S +    P+  L  +   L K+G+ T VI    GY +A V ++
Sbjct: 221 SVFATAVGASATDLTFDSDTTS--PNEDLIKAADKL-KEGEVTDVIEADNGYYVAKVVSL 277

Query: 357 KPSFTVSFQEVKKDIANQMRITK 379
                      K+ I +Q +  +
Sbjct: 278 LDRDAT--DTKKESIVSQRKSDQ 298


>gi|322412103|gb|EFY03011.1| foldase protein PrsA [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 354

 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 54/172 (31%), Gaps = 17/172 (9%)

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
             SN  + + + K  D Y A     ++         +K+I  S     A  E  K++  +
Sbjct: 75  KVSNKEVEKAYNKTADQYGASFSGVLAQASLTPETYKKQIRSSKLVEYAVREAAKKELTT 134

Query: 267 PE----------IRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSF 315
            E              + +   ++++A+   + +K  G  F  +A+E+  S        F
Sbjct: 135 KEYQKAYESYTPTMAAQVITLDSEEKANHTLEEVKAEGADFATIAKEKTTSADKKVAYKF 194

Query: 316 SKEYIPDVSLADSIFSLAKKGDFT------PVIHGSFGYVIAHVSNIKPSFT 361
                   +      S  K+G+ +              + I  V+       
Sbjct: 195 DSGTTTLPADVVKAASSLKEGEMSEVISVLDPTTYQNKFYIIKVNKKAEKKA 246


>gi|77463460|ref|YP_352964.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides 2.4.1]
 gi|77387878|gb|ABA79063.1| Probable PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 435

 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V  + +    F    +               +    +  ++K+ +D L+         E 
Sbjct: 67  VNDRVITNYEFEQRVR-------------FLTILGATGDVEKQAMDALIEDKIRFDAAEQ 113

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDV 164
            GL+A   ++         F G+ N  S + F + L + G+  + + D     L  R  +
Sbjct: 114 AGLKATEEQIKE---GMEEFAGRAN-LSAEQFAAELGKAGVAVETFRDFVHAGLIWRELM 169

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
              F    RP+   +D+A        S+  ++
Sbjct: 170 RAKFGAVARPTETAIDRAITRQTSRASIRLLL 201


>gi|319648995|ref|ZP_08003204.1| hypothetical protein HMPREF1012_04243 [Bacillus sp. BT1B_CT2]
 gi|317388989|gb|EFV69807.1| hypothetical protein HMPREF1012_04243 [Bacillus sp. BT1B_CT2]
          Length = 255

 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 54/156 (34%), Gaps = 8/156 (5%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           V  + TV  V  +K+    + +          Q+ G    S+ A    + K+ +D+L+  
Sbjct: 61  VDDTKTVAVVNDEKITGKDYNSVLSTAQMQY-QQTGQDPTSKDAAQ-QIKKQAIDSLIGQ 118

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
           A + Q  +  G +A    +  ++        K    +   F   + + G+N         
Sbjct: 119 ALITQEADKKGYKASEKEIEKQLDE-----SKKQYKNEQDFEEAVKKAGLNMNTLKSDIA 173

Query: 157 KMLSRTDVVGMFVGGMRPSNLLL-DQAKRFYFENRS 191
             +     +   +   + ++  + D   +F  + + 
Sbjct: 174 DSIKTEKYIDKELPTDQVTDKEIKDYYDQFAAQQKD 209


>gi|225556744|gb|EEH05032.1| peptidyl-prolyl cis-trans isomerase pin4 [Ajellomyces capsulatus
           G186AR]
 gi|240281601|gb|EER45104.1| peptidyl-prolyl cis-trans isomerase pin4 [Ajellomyces capsulatus
           H143]
          Length = 127

 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 14/85 (16%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF  +A E  +  +    SLG   +  + +       
Sbjct: 42  VRHILCEKHSKKEEAAEKLRNGAKFDDVAREFSEDKARQGGSLGWKVRGSL-NGEFEKVA 100

Query: 330 FSL-------AKKGDFTPVIHGSFG 347
           + L        K G+        FG
Sbjct: 101 YELEPSTTANPKWGEV----KTGFG 121


>gi|52078715|ref|YP_077506.1| putative lytic transglycosylase YomI [Bacillus licheniformis ATCC
           14580]
 gi|52784085|ref|YP_089914.1| hypothetical protein BLi00261 [Bacillus licheniformis ATCC 14580]
 gi|52001926|gb|AAU21868.1| putative lytic transglycosylase YomI [Bacillus licheniformis ATCC
           14580]
 gi|52346587|gb|AAU39221.1| hypothetical protein BLi00261 [Bacillus licheniformis ATCC 14580]
          Length = 255

 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 54/156 (34%), Gaps = 8/156 (5%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           V  + TV  V  +K+    + +          Q+ G    S+ A    + K+ +D+L+  
Sbjct: 61  VDDTKTVAVVNDEKITGKDYNSVLSTAQMQY-QQTGQDPTSKDAAQ-QIKKQAIDSLIGQ 118

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
           A + Q  +  G +A    +  ++        K    +   F   + + G+N         
Sbjct: 119 ALITQEADKKGYKASEKEIEKQLDE-----SKKQYKNEQDFEEAVKKAGLNMNTLKSDIA 173

Query: 157 KMLSRTDVVGMFVGGMRPSNLLL-DQAKRFYFENRS 191
             +     +   +   + ++  + D   +F  + + 
Sbjct: 174 DSIKTEKYIDKELPTDQVTDKEIKDYYDQFAAQQKD 209


>gi|160878273|ref|YP_001557241.1| hypothetical protein Cphy_0113 [Clostridium phytofermentans ISDg]
 gi|160426939|gb|ABX40502.1| hypothetical protein Cphy_0113 [Clostridium phytofermentans ISDg]
          Length = 377

 Score = 45.4 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 68/207 (32%), Gaps = 25/207 (12%)

Query: 196 VLNNRHVPAI--ADPSNAVLTQWFEKYK----DNYRAPEYKRISYILFDVHEKEKKIEIS 249
           +L+     A   ++ S   L  ++   K      YR        Y    ++      E+S
Sbjct: 159 LLDADEFTADFTSNFSPEAL-DYYNVNKGVVNKIYRDNMLANKIYESLTLNV---DTEVS 214

Query: 250 ND----ELQAEYEKNKEKYFSPEIRT--VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
           ++     +       K  Y +   R    ++ +  ++  A +  +     K F   A   
Sbjct: 215 DELARQAVFQYILVGKYGYDANGNRIEYTKEQLEESKTRAYKLREEALDAKNFYDFAAAN 274

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
               +++ + +  K  +   +L    F+L + G+ + VI  + GY I    ++       
Sbjct: 275 SDDENEVEI-TVGKGDM-KENLEKVAFALDE-GEISDVIDTADGYFIFRCVSLLDRNAT- 330

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390
                      + I +  E    +Y +
Sbjct: 331 -----DSKKEDIIIKRQEEAFDVEYNK 352


>gi|325087752|gb|EGC41062.1| peptidyl-prolyl cis-trans isomerase [Ajellomyces capsulatus H88]
          Length = 127

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 14/85 (16%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSI 329
           V  ++     + +EA + L+ G KF  +A E  +  +    SLG   +  + +       
Sbjct: 42  VRHILCEKHSKKEEAAEKLRNGAKFDDVAREFSEDKARQGGSLGWKVRGSL-NGEFEKVA 100

Query: 330 FSL-------AKKGDFTPVIHGSFG 347
           + L        K G+        FG
Sbjct: 101 YELEPSTTANPKWGEV----KTGFG 121


>gi|301607117|ref|XP_002933140.1| PREDICTED: laminin subunit beta-1-like [Xenopus (Silurana)
            tropicalis]
          Length = 1782

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 42/348 (12%), Positives = 113/348 (32%), Gaps = 36/348 (10%)

Query: 162  TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
            T++          S ++ +   R     +S   ++          + SN  L    ++ +
Sbjct: 1445 TEIQNALAEVEELSKMVAESKLRAEEAKQSAQDVLTKANATKEKVNQSNEDLRNLIKQIR 1504

Query: 222  DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
            +          S         +  +  + ++LQ           + EIR   + +     
Sbjct: 1505 EFLMQDGADLDSIEAVASEVLKMDMPSTPEQLQK---------LTEEIRERVESLSGVDT 1555

Query: 282  EADEAFQSLKKGKKFIQLAEEQGKSLSDISLG-SFSKEYIPDVSLADSIFSLAKKGDFTP 340
               ++   + + +  +  A+E  KS +DI       KE + +   A S    A       
Sbjct: 1556 ILKQSAGDIARAEALLDEAKESSKSAADIKATVDAVKEALMEAGKAQSAAEKA------- 1608

Query: 341  VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGT 399
                     I    +           ++ + A ++  +  A++++ +    +++ +    
Sbjct: 1609 ---------IKRADDDIKGTNDLLTSIESEAAVSEETLNNATKRLVQLENNIDDLMKKSA 1659

Query: 400  SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
            +  + + + +    ++       K V   E+       + L     +D   ++     L 
Sbjct: 1660 ANSQTANQVEKSVHEVKANANGAKKVLDGELTNKYKTVEDLIAKKAEDSEEARRKAQELQ 1719

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
              +      K  +   ++KL+ +   ++K ++  +    +  KA QLV
Sbjct: 1720 KEA------KGLLEQANKKLDTIKD-LEKTYEGNE--RILEEKAKQLV 1758


>gi|255965590|gb|ACU45098.1| peptidyl-prolyl cis-trans isomerase [Pfiesteria piscicida]
          Length = 190

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 56/160 (35%), Gaps = 17/160 (10%)

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
                GY++A +     S  +  +  ++ +   +R  K +E +++           G ++
Sbjct: 31  FETPQGYIVAKLKEKNDSGLLPIEYARESVGTILRNEKKAELIRKKMT--------GATL 82

Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
           +E+++      +    V           +  +  + +++   F       K   +   + 
Sbjct: 83  EEVAKSTGSSVLTANDVILG-----NTIMPNVGQEPKVVGTAFAL--ATGKTSKLIDGNS 135

Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
               ++ K  I A    +    + + ++ +T +   ++ +
Sbjct: 136 GVFIIRAKSVIEA--PAVNAYTSQITQEMQTQQNNAQMRA 173


>gi|328771505|gb|EGF81545.1| hypothetical protein BATDEDRAFT_10474 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 160

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 50/164 (30%), Gaps = 45/164 (27%)

Query: 216 WF---EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
           ++   +  + ++  PE   +  I  D+      + + +DE             +      
Sbjct: 10  YYFSPDTKQSHWEKPEG-DVKIIPLDLSL----VPVGDDEAS----------TAQNQIRA 54

Query: 273 EQLVFP-----------------NQKEA----DEAFQSLKKGK-KFIQLAE---EQGKSL 307
             L+                   +++EA          ++ G+     LA+   +   + 
Sbjct: 55  SHLLVKHSGSRRPSSWKEANISRSKEEAMQIIQNFRAKIESGEVDLSTLAKTESDCSSAS 114

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
               LG F    +   S   + F+L K G+ +  +    G  + 
Sbjct: 115 RGGDLGKFGYGQM-QASFEQAAFAL-KVGELSNPVVSDSGIHLI 156


>gi|225678868|gb|EEH17152.1| peptidyl-prolyl cis-trans isomerase pin1 [Paracoccidioides
           brasiliensis Pb03]
          Length = 140

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 276 VFPNQKEADEAFQS----LKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +  +++EA E  +     ++ G+           +   +     LG F +  +      +
Sbjct: 55  ITRSKEEALEILRRHEESIRSGEKTLGDIAMSESDCSSARKRGDLGFFGRGEM-QAEFEE 113

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAH 352
           + F+L + G  + ++  + G  +  
Sbjct: 114 AAFAL-EPGQLSGIVETASGVHLIE 137


>gi|221639318|ref|YP_002525580.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides KD131]
 gi|221160099|gb|ACM01079.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides KD131]
          Length = 405

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V  + +    F    +               +    +  ++K+ +D L+         E 
Sbjct: 37  VNDRVITNYEFEQRVR-------------FLTILGATGDVEKQAMDALIEDKIRFYAAEQ 83

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDV 164
            GL+A   ++         F G+ N  S + F + L + G+  + + D     L  R  +
Sbjct: 84  AGLKATEEQIKE---GMEEFAGRAN-LSAEQFAAELGKAGVAVETFRDFVHAGLIWRELM 139

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
              F    RP+   +D+A        S+  ++
Sbjct: 140 RAKFGAVARPTETAIDRAITRQTSRASIRLLL 171


>gi|169350366|ref|ZP_02867304.1| hypothetical protein CLOSPI_01133 [Clostridium spiroforme DSM 1552]
 gi|169293149|gb|EDS75282.1| hypothetical protein CLOSPI_01133 [Clostridium spiroforme DSM 1552]
          Length = 284

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 74/213 (34%), Gaps = 22/213 (10%)

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV-----LTQWFEKYKDNYRAPEY 229
           + +  +    +  E      ++       A  + ++       L +     +++  + + 
Sbjct: 42  TEISKNDIYHYLLEQFGSSEVLSLALTYIADQEITDEDAFNTRLNEEIASQEESGTSLDD 101

Query: 230 KRISYILFDVHEKEKK---IEISNDELQAEY-EKNKEKYFSPEIRTVEQ-LVFPNQKEAD 284
               Y L +  +   +   I +    L+ +Y +KN +K          + +    +  A 
Sbjct: 102 IAKQYGLENRQQYIDQVLSIGVKQQMLKEKYIDKNYKKLIKEYKVKYLKTITLDTEAGAK 161

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIH 343
           +  + +KKG  F  +  E   S     +G  + E    D ++   +    K G    VI 
Sbjct: 162 KLLKEIKKGSDFDTVMNENSGS----DVGMVTTETTTVDSNIIKKLDDFTKDGVHNKVIE 217

Query: 344 GSFG-YVIAHVSNIKPSFTVSFQEVKKDIANQM 375
            S   Y I +V N   S      EV+ DI + +
Sbjct: 218 TSDSKYAIVYVYNTDTS------EVEDDIKSNL 244


>gi|189912085|ref|YP_001963640.1| hypothetical protein LBF_2578 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776761|gb|ABZ95062.1| Hypothetical protein LBF_2578 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
          Length = 413

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 109/321 (33%), Gaps = 57/321 (17%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFS---VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
              I +  L + FL      +L        S+   SV  + +P   F  + +       Q
Sbjct: 21  FLFILVGTLIITFLPGDAEQSLIGAITGQNSTKAGSVAGRSIPVDYFNAAKRDCYYRYQQ 80

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQF-IEDIGLEADHGRVWGEIARSPLFHGK 128
                   E A++  L      + V    +       +G +     +  E+++       
Sbjct: 81  -----YGRETAQNSELLNSCAYSTVREMYIANDIAAAVGFQVSEISIKREMSKQA----- 130

Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
                 ++    +++ G  E++         S T++                    +  +
Sbjct: 131 -----REIHKESVSQAGYGEEDSR-------SLTEIYQQIYRSAPM---------YYRID 169

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
           + +   +  N    P     + A L    ++ K ++R      ++ +    +  E KI I
Sbjct: 170 SATGYALFPNFLDQPLAPSENEAELESEAKRAKISFRLVAISEVNLL----NAVESKINI 225

Query: 249 SNDELQAEYEKNKEK----------YFSPEIRT---VEQLVFPNQKEADE-----AFQSL 290
           ++ ELQ EYEK K++          + S E+R    + +L F  +++  E       Q +
Sbjct: 226 TDAELQKEYEKEKQEGNLSKDPSGNFVSFEVRKPLLLSKLKFDRKRKEVEVWKGRIGQKI 285

Query: 291 KKGKKFIQLAEEQGKSLSDIS 311
            +      +A+E G+ +  +S
Sbjct: 286 SEPNALDAIAKEAGQPIETVS 306


>gi|301299775|ref|ZP_07206018.1| PPIC-type PPIASE domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852630|gb|EFK80271.1| PPIC-type PPIASE domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 206

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 23/125 (18%)

Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252
             S+  + + +  YK  Y              ++   + I   L      +   +I++ +
Sbjct: 68  KVSDKKVNEQYNTYKKQYGSSFDSVLAQNDMTKSSFKQEIRSNLLLKEAVKDNTKITDKQ 127

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKSLSD 309
           L+A++++ + K       TV  ++   +  A++    LK+      F +LA++     S 
Sbjct: 128 LKAQWKEYEPK------VTVAHILVSKKSTAEDIINKLKEDGSYANFKKLAKKYSTDSST 181

Query: 310 ISLGS 314
            + G 
Sbjct: 182 KNDGG 186



 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 56/181 (30%), Gaps = 33/181 (18%)

Query: 26  LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
            I G+       + S TV +    K+  S + +S                     +    
Sbjct: 8   AISGIVLTFGLAACSKTVATTSGGKITESEYYSSM--------------------KKTSS 47

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
            K++L  ++    L+   ++ G +    +V  +       +    K     F S LA+  
Sbjct: 48  GKQVLQQMILNKVLE---KEYGSKVSDKKVNEQ-------YNTYKKQYGSSFDSVLAQND 97

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           + +  +       L    +        + ++  L    + Y    +V +I+++ +     
Sbjct: 98  MTKSSFKQEIRSNLL---LKEAVKDNTKITDKQLKAQWKEYEPKVTVAHILVSKKSTAED 154

Query: 206 A 206
            
Sbjct: 155 I 155


>gi|319898728|ref|YP_004158821.1| Peptidyl-prolyl cis-trans isomerase [Bartonella clarridgeiae 73]
 gi|319402692|emb|CBI76238.1| Peptidyl-prolyl cis-trans isomerase [Bartonella clarridgeiae 73]
          Length = 319

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 37/128 (28%), Gaps = 17/128 (13%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +S VV+V    +                           + +   L  +  + L+  A  
Sbjct: 36  TSVVVTVNGNPITSYDIQRRI-------------AFLKLQQKQGNLAAQAKNELIDEALK 82

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +  I+   +E     V         F  ++N  + D     LA+  +  + +  +    +
Sbjct: 83  NNEIKRRNIEVSKDEVESAFKN---FALQNN-MTVDQLNQMLAQTDVTVEHFKTYILGQM 138

Query: 160 SRTDVVGM 167
               +V  
Sbjct: 139 GWGRLVNA 146


>gi|16551836|dbj|BAB71182.1| unnamed protein product [Homo sapiens]
          Length = 1066

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 92/286 (32%), Gaps = 30/286 (10%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK---ILDNL-VSGATL 99
             V +Q+V   ++    ++ L    +    ++  E  + +   ++   +   L V    L
Sbjct: 714 AKVDQQRVEDEAWYQK-QELLRKAEETRREMLLQEEEKMIQQRQRLAAVKRELKVKEMHL 772

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
                   L+    +      +       D++    V++             I    + L
Sbjct: 773 QDAARRRFLKLQQDQ------QEMELRRLDDEIGRKVYMR---------DREIAATARDL 817

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS-----VDYIVLNNRHVPAIADPSNAVLT 214
               +       +   N L +  +    E R+        + L       + +       
Sbjct: 818 EMRQLELESQKRLYEKN-LTENQEALAKEMRADADAYRRKVDLEEHMFHKLIEAGETQSQ 876

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           +  +  K+N    E   ++       +   K +  + +    Y++  +       + +E 
Sbjct: 877 KTQKVIKENLAKAEQACLNTDWQI--QSLHKQKCDDLQRNKCYQEVAKLLRENRRKEIEI 934

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
           +    ++EA +  +   +GK+F   + ++  +LSD S   F K+ I
Sbjct: 935 INAMVEEEAKKWKE--AEGKEFRLRSAKKASALSDASRKWFLKQEI 978


>gi|298480173|ref|ZP_06998371.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D22]
 gi|298273454|gb|EFI15017.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D22]
          Length = 515

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKK--FIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
           P+  T    +   +   D  ++ ++      F +L E             + +       
Sbjct: 136 PQTVTFRH-LEEEKVRMDSIYRVIQNQPDLNFNRLVEIYSDDKQS----RWIEGLETTSE 190

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             D  FSLAK G  +       G  I  V + + +F   ++ V   +  ++R  +  +K
Sbjct: 191 FEDVAFSLAK-GAVSQPFFTPEGIHILKVIDREEAFA--YENVSGRLIERLRRKEILDK 246


>gi|260904425|ref|ZP_05912747.1| SurA-like protein [Brevibacterium linens BL2]
          Length = 254

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 9/173 (5%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
            V  V  +K+    F+  +  E      ++    + ++     L  +  +NLVS   L Q
Sbjct: 58  VVAEVNGEKITKDDFVPLY--ETQYQQMQMQSQQSGQQVDEKQLKTQTAENLVSTELLSQ 115

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
             E   ++     V   +  S     K ++ S   F++ + ++G++EK+        L+ 
Sbjct: 116 EAEKRDIKVSDKDVDKGLEES----AKSSQMSKKDFLAAMKKQGMDEKKVHAELKTQLAI 171

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
             ++    G  + S    +   + Y + ++    +       A   PS   + 
Sbjct: 172 EGLIKDEYGEFKASG---EDIGQAYQQAKTQQEQMAQQSGQQAQEVPSLEEMR 221


>gi|223005859|ref|NP_663622.2| WD repeat-containing protein 67 isoform 1 [Homo sapiens]
 gi|116242845|sp|Q96DN5|WDR67_HUMAN RecName: Full=WD repeat-containing protein 67
 gi|75517235|gb|AAI01725.1| WD repeat domain 67 [Homo sapiens]
 gi|85567053|gb|AAI11955.1| WD repeat domain 67 [Homo sapiens]
 gi|119612426|gb|EAW92020.1| WD repeat domain 67, isoform CRA_c [Homo sapiens]
          Length = 1066

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 92/286 (32%), Gaps = 30/286 (10%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK---ILDNL-VSGATL 99
             V +Q+V   ++    ++ L    +    ++  E  + +   ++   +   L V    L
Sbjct: 714 AKVDQQRVEDEAWYQK-QELLRKAEETRREMLLQEEEKMIQQRQRLAAVKRELKVKEMHL 772

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
                   L+    +      +       D++    V++             I    + L
Sbjct: 773 QDAARRRFLKLQQDQ------QEMELRRLDDEIGRKVYMR---------DREIAATARDL 817

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS-----VDYIVLNNRHVPAIADPSNAVLT 214
               +       +   N L +  +    E R+        + L       + +       
Sbjct: 818 EMRQLELESQKRLYEKN-LTENQEALAKEMRADADAYRRKVDLEEHMFHKLIEAGETQSQ 876

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           +  +  K+N    E   ++       +   K +  + +    Y++  +       + +E 
Sbjct: 877 KTQKVIKENLAKAEQACLNTDWQI--QSLHKQKCDDLQRNKCYQEVAKLLRENRRKEIEI 934

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
           +    ++EA +  +   +GK+F   + ++  +LSD S   F K+ I
Sbjct: 935 INAMVEEEAKKWKE--AEGKEFRLRSAKKASALSDASRKWFLKQEI 978


>gi|115461134|ref|NP_001054167.1| Os04g0663800 [Oryza sativa Japonica Group]
 gi|113565738|dbj|BAF16081.1| Os04g0663800 [Oryza sativa Japonica Group]
          Length = 72

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 286 AFQSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
             + +  G+ KF  +A E+     +     LG F +  +   +   ++ +L K G+ + V
Sbjct: 1   LREKIVAGERKFEDVATEESDCNSAKRGGDLGPFERGKM-QKAFEKAVLAL-KVGEISDV 58

Query: 342 IHGSFGYVIA 351
           +    G  I 
Sbjct: 59  VDTDSGVHII 68


>gi|163784187|ref|ZP_02179121.1| hypothetical protein HG1285_05540 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880547|gb|EDP74117.1| hypothetical protein HG1285_05540 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 288

 Score = 45.0 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
           DK+    L+    L Q     G++     +   I R       +   S + F   L ++G
Sbjct: 56  DKEAAQKLIDHILLYQEARKKGIKVMPQEIKAAIERIS---KANKVSSIEEFKKLLQKQG 112

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
           I   E+ D   + ++    V   +       +L +  +      R V  I L+ + 
Sbjct: 113 IAYNEFYDLIKREIAINKYVQFVIK----PKILENSKEAVEETYRKVRIIYLDKKD 164


>gi|254503520|ref|ZP_05115671.1| SurA N-terminal domain family [Labrenzia alexandrii DFL-11]
 gi|222439591|gb|EEE46270.1| SurA N-terminal domain family [Labrenzia alexandrii DFL-11]
          Length = 314

 Score = 45.0 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 40/162 (24%), Gaps = 16/162 (9%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V    +         +     + +                 ++ +  L+           
Sbjct: 40  VNDVPITDYDITQRARLITLTLRKSASVA-----------RREAVQELIDDQVKVGEATR 88

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
           +G+      V    A       ++ K +       L + G+  +         L    +V
Sbjct: 89  MGMSVSDSEVDNAYANI----ARNVKLTPARLTQALGQGGVRAETLKKRLRAQLIWGKLV 144

Query: 166 GM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
              F GG+      +  A R   E      I  + + V  + 
Sbjct: 145 RARFSGGVDVDESDIIAALRKTDEEDRATSIEYDLQRVIVVV 186


>gi|154500400|ref|ZP_02038438.1| hypothetical protein BACCAP_04067 [Bacteroides capillosus ATCC
           29799]
 gi|150270905|gb|EDM98188.1| hypothetical protein BACCAP_04067 [Bacteroides capillosus ATCC
           29799]
          Length = 529

 Score = 45.0 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 87/306 (28%), Gaps = 77/306 (25%)

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN----KFSHDVFVSRLA 142
           +  LD L   A L    E  G   D      E   S +   KDN     +S+  ++  + 
Sbjct: 132 ESALDALTQVAALTDAAEKDGFSLDLSESGKETYNSTIASMKDNATTSGYSYASYLQAIY 191

Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
              +    Y     + +  T+                       ++    D +       
Sbjct: 192 GSHMTTGIYESCLKRAIMLTE-----------------------YQQAHQDTLTY----- 223

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                 ++   T ++++ KD+         SY +  +          +       E+ K 
Sbjct: 224 ------TDEDYTTYYDENKDSIDT-----FSYEVAFLSGSAPSTTDEDGNTVEATEEEKT 272

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ----------GKSLSDISL 312
                            +  AD+    ++ G  F +LA+                +  SL
Sbjct: 273 AAME-----------AAKANADKLMADVEAGGDFAELADAYVQEDSANTFRSTETTGSSL 321

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE----VK 368
            +   +++ D + A+        GD   V   + GY +    +     T +       VK
Sbjct: 322 STTYGDWLKDAARAE--------GDI-NVFESTSGYYVVRFLDRYLDETPTADIRHILVK 372

Query: 369 KDIANQ 374
            ++  +
Sbjct: 373 AELTQE 378


>gi|209885477|ref|YP_002289334.1| SurA N- domain family [Oligotropha carboxidovorans OM5]
 gi|209873673|gb|ACI93469.1| SurA N- domain family [Oligotropha carboxidovorans OM5]
          Length = 330

 Score = 45.0 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 18/141 (12%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
              +  +F+  + + F  + +      SV     VV V  + +                 
Sbjct: 20  NAPLLSVFVSRIALAFAAFIILAVTAPSVQAQGIVVMVNGEPITTYDIEQR--------- 70

Query: 69  QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
                 + +   R     ++ L  L+      +  +  G++     V    A       +
Sbjct: 71  ----TKLITLTTRKAPTRQQALQELIDDRLKIKEAKKFGVDLSASDVDSAFAGM----AQ 122

Query: 129 DNKFSHDVFVSRLAREGINEK 149
             + S D     L  +G+   
Sbjct: 123 RMRISSDQLAQVLQAQGVRPD 143


>gi|119612424|gb|EAW92018.1| WD repeat domain 67, isoform CRA_a [Homo sapiens]
          Length = 987

 Score = 45.0 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 92/286 (32%), Gaps = 30/286 (10%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK---ILDNL-VSGATL 99
             V +Q+V   ++    ++ L    +    ++  E  + +   ++   +   L V    L
Sbjct: 635 AKVDQQRVEDEAWYQK-QELLRKAEETRREMLLQEEEKMIQQRQRLAAVKRELKVKEMHL 693

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
                   L+    +      +       D++    V++             I    + L
Sbjct: 694 QDAARRRFLKLQQDQ------QEMELRRLDDEIGRKVYMR---------DREIAATARDL 738

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS-----VDYIVLNNRHVPAIADPSNAVLT 214
               +       +   N L +  +    E R+        + L       + +       
Sbjct: 739 EMRQLELESQKRLYEKN-LTENQEALAKEMRADADAYRRKVDLEEHMFHKLIEAGETQSQ 797

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
           +  +  K+N    E   ++       +   K +  + +    Y++  +       + +E 
Sbjct: 798 KTQKVIKENLAKAEQACLNTDWQI--QSLHKQKCDDLQRNKCYQEVAKLLRENRRKEIEI 855

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
           +    ++EA +  +   +GK+F   + ++  +LSD S   F K+ I
Sbjct: 856 INAMVEEEAKKWKE--AEGKEFRLRSAKKASALSDASRKWFLKQEI 899


>gi|99035882|ref|ZP_01314934.1| hypothetical protein Wendoof_01000229 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 413

 Score = 45.0 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 50/171 (29%), Gaps = 19/171 (11%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +                   I  +  ++         ++L  L+    +   
Sbjct: 56  VADVNGEPISNLDIEKRIN--------FINSLFGTQSVNQKEAKPQVLRELIDEIIIINE 107

Query: 103 IEDIGLEADHGRVWGEIA--RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
            + + ++  +  +   I    +  F  K N+         + +  I+           L 
Sbjct: 108 AQRLNIKLSNEELDNAIMLFLTQSFKLKANEVD-----QYIEKHNIDLGILRKQIKCQLL 162

Query: 161 RTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
            + ++ +  V  +  S+  +D  KR   +    DY++     +       +
Sbjct: 163 WSKIIEVRIVPFINISDKEVDDVKR---QTEKPDYLITFQEFIIPDQKDKD 210


>gi|229824579|ref|ZP_04450648.1| hypothetical protein GCWU000282_01923 [Catonella morbi ATCC 51271]
 gi|229785950|gb|EEP22064.1| hypothetical protein GCWU000282_01923 [Catonella morbi ATCC 51271]
          Length = 1885

 Score = 45.0 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 37/335 (11%), Positives = 90/335 (26%), Gaps = 58/335 (17%)

Query: 48  RQKVPFSSFINSWKQELGMI---SQKIGFVVNSERARSVGLDKKI---------LDNLVS 95
           +     +++  +       +     +   +++   A+   +DK +         LD   +
Sbjct: 196 KTPQSIANYQQALDSLRDSLEATRAQAQAILSDPEAKQEQVDKTLIAVNEVQAKLDQ--A 253

Query: 96  GATLDQFIEDIGLEADHGRVWGEIAR-----------SPLFHGKDN---KFSHDVFVSRL 141
            A L Q  +   LE     +   I +              +        + S +     L
Sbjct: 254 KALLRQQADKSALEKAKNNLDQAIQKPVVTDQKRPKTIQNYQAAKGLALQLSQEA-AQLL 312

Query: 142 AREGINEKEYIDHYTK------------------------MLSRTDVVGMFVGGMRPSNL 177
                  +E +    K                          + T +        +    
Sbjct: 313 KNLNATPEEVLASTEKLNKAFQQLELAEAGILDLVDKADLQRALTQLNLPVDTTGKTPRS 372

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
           + D ++       ++D      + + A  D +   +    E  KD     +  +   +  
Sbjct: 373 VNDFSQALAGHQATIDQAKAKAQALIANQDATPEEVAAAIEAVKDAQALKDQAQALLMDR 432

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----QKEADEAFQSLKKG 293
              E   +   +  E+ A            +     Q V  +    Q+  D+A Q+L++ 
Sbjct: 433 ANKEALGQQVEAAQEVVANRYTPASFQKVADQLKAAQAVLEDGDSSQEAVDQATQALREA 492

Query: 294 -KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
             +  Q+  +      +  +   S+       L D
Sbjct: 493 LAQLEQVEPKYTAVNVEAPVSDLSRSVTVSYQLED 527


>gi|163781565|ref|ZP_02176565.1| hypothetical protein HG1285_01743 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882785|gb|EDP76289.1| hypothetical protein HG1285_01743 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 289

 Score = 45.0 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 48/142 (33%), Gaps = 23/142 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V +V  + +  S    +                  +    V    K+++ L+    +
Sbjct: 35  DRVVANVNGEPILESELKVA------------------QMFYGVKDRDKLIELLIQKHLI 76

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            QF+ D GL+   G V   I         + K   +++   L  +G++  +        +
Sbjct: 77  AQFLRDNGLKVPEGYVDTLIEDIA---RSNGKSVDELYRE-LYSKGLSPADLRSFLEVEV 132

Query: 160 SRTD-VVGMFVGGMRPSNLLLD 180
           + T  +    +  +  S++ ++
Sbjct: 133 ASTLGLREYLMSRVEVSDIEIE 154


>gi|223462235|gb|AAI50810.1| Laminin B1 subunit 1 [Mus musculus]
          Length = 1834

 Score = 45.0 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 69/573 (12%), Positives = 168/573 (29%), Gaps = 106/573 (18%)

Query: 113  GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS--RTDVVGMFVG 170
              +   +A+SP                 L   GI  +E  +  TK ++     V      
Sbjct: 1276 NEIKDILAQSPA-------------AEPLKNIGILFEE-AEKLTKDVTEKMAQVEVKLTD 1321

Query: 171  GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNYR 225
                SN    +      E  S+D  V            S+       +T++F+       
Sbjct: 1322 TASQSNSTAGELGALQAEAESLDKTVKELAEQLEFIKNSDIQGALDSITKYFQM-----S 1376

Query: 226  APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
                KR++    D +   ++  ++ D ++    + +  +   +      L        DE
Sbjct: 1377 LEAEKRVNASTTDPNSTVEQSALTRDRVEDLMLERESPFKEQQEEQARLL--------DE 1428

Query: 286  AFQSLKKGKKFIQLAE-----EQGKSLSDISLGS-------------------------- 314
                L+        A+       G   S+   G                           
Sbjct: 1429 LAGKLQS-LDLSAAAQMTCGTPPGADCSESECGGPNCRTDEGEKKCGGPGCGGLVTVAHS 1487

Query: 315  -FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
             + K    D    D + +LA+    + ++  +       V   +         +K +   
Sbjct: 1488 AWQKAMDFD---RDVLSALAEVEQLSKMVSEA------KVRADEAKQNAQDVLLKTNATK 1538

Query: 374  QMRITKASEKVKEDYKRLEEFL-ALGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEVA 431
            + ++ K++E ++   K++  FL      +D I +   +++ +++P      +++      
Sbjct: 1539 E-KVDKSNEDLRNLIKQIRNFLTEDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRE 1597

Query: 432  AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
             +    Q+   +      +++   + L +         +     D     V   +++  K
Sbjct: 1598 RVETLSQVEVILQQSAADIARAELL-LEEAKRASKSATDVKVTADM----VKEALEEAEK 1652

Query: 492  TVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
                AE+   +A++           +  E +   +   +  + +        ++ R   +
Sbjct: 1653 AQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKAAQ 1712

Query: 541  NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQM 597
            N          V+S            +G     +K   S +          +  + L Q 
Sbjct: 1713 NSGEAEYIEKVVYSVKQNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELLQN 1772

Query: 598  MNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
              K LL        ++  L+ +Y    +   ++
Sbjct: 1773 EAKTLLAQANSKLQLLEDLERKY--EDNQKYLE 1803


>gi|218663295|ref|ZP_03519225.1| hypothetical protein RetlI_30253 [Rhizobium etli IE4771]
          Length = 318

 Score = 45.0 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 147 NEKEYIDHYTKMLSRTDVV-GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
             ++      + + +  +       G+   + ++          R    +      V ++
Sbjct: 76  TPEQVRGLVDQKVRQEILFREAVSLGLDRDDEVVK--------RRLAQKMDFLASDVASL 127

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
            +P++A L  WFE+  + +  P +    ++ F    + K  +
Sbjct: 128 QEPTDAELKAWFEQNSETFALPAHATFRHLYFSTDRQGKGTK 169



 Score = 37.3 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 18/128 (14%)

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
            TK   R   +     G        +Q +    +   V   +L    V    D  + V+ 
Sbjct: 55  LTKDDIRQLAISWLAQGRSTP--TPEQVRGLVDQK--VRQEILFREAVSLGLDRDDEVVK 110

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
                          +    + F   +     E ++ EL+A +E+N E +  P   T   
Sbjct: 111 --------------RRLAQKMDFLASDVASLQEPTDAELKAWFEQNSETFALPAHATFRH 156

Query: 275 LVFPNQKE 282
           L F   ++
Sbjct: 157 LYFSTDRQ 164


>gi|242051344|ref|XP_002463416.1| hypothetical protein SORBIDRAFT_02g043490 [Sorghum bicolor]
 gi|241926793|gb|EER99937.1| hypothetical protein SORBIDRAFT_02g043490 [Sorghum bicolor]
          Length = 304

 Score = 44.6 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 9/92 (9%)

Query: 272 VEQLVFPNQKE---ADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
           V+ L+   +      D     +  G     LA E     S      LG   K  +     
Sbjct: 100 VQHLLVGEKDVRLLVDLEKSIIAGGADLSDLAVEHSLCPSKENGGMLGWVRKGQMV-PEF 158

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
            ++ FS              FG+ +  V   +
Sbjct: 159 EEAAFSAPLNKVVR--CKTKFGWHLLQVLAER 188


>gi|189182933|ref|YP_001936718.1| hypothetical protein OTT_0026 [Orientia tsutsugamushi str. Ikeda]
 gi|189179704|dbj|BAG39484.1| hypothetical protein OTT_0026 [Orientia tsutsugamushi str. Ikeda]
          Length = 291

 Score = 44.6 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 46/131 (35%), Gaps = 18/131 (13%)

Query: 22  FVPFLIWGLS--DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI--SQKIGFVVNS 77
            + F +  +   ++  +++ +  V  V    +        +++ +  +  SQ +  + +S
Sbjct: 4   ILAFFLTIIVVCNSSGALAATKIVAIVDGTPITSHQLDK-FRKVITFLHRSQSLTSISDS 62

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA-RSPLFHGKDNKFSHDV 136
           E      L    L+ L+         +  G+EA    +   IA      +  D  F + +
Sbjct: 63  E------LTTIALEALIDRVIFLNEAKRYGIEASQDEINQFIAMEEKAINLPDQYFKYAI 116

Query: 137 ------FVSRL 141
                 + + L
Sbjct: 117 KESEVSYDAFL 127


>gi|219111311|ref|XP_002177407.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411942|gb|EEC51870.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 195

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 19/147 (12%)

Query: 252 ELQAEYEKNKEKYFSPEIR-TVEQLVFPNQKE-ADEAFQSLKK--GKK-------FIQLA 300
           E++   ++ ++ Y +   R T   ++ P   + A    Q ++    +        F   A
Sbjct: 17  EIKNPLDRIQKDYLALTRRVTARHILLPPSADLALALKQKIRNRVNEDGVYVIDAFEAAA 76

Query: 301 EEQGKSLSDISLGSFSKEYIPD-----VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
           ++  +  +    G    E +P      V L  + FS+ + G+    +   +G+ +  VS 
Sbjct: 77  KKFSRDETTNFRGGLIGELVPQGYCRSVELDQACFSV-RLGEIEGPLESDYGFHLILVSE 135

Query: 356 IKPSFTVSFQEVKKDIANQMRITKASE 382
                       K  +    ++T+  E
Sbjct: 136 RT--NCPKLDGSKTKLVRDGKVTRLVE 160


>gi|91776379|ref|YP_546135.1| hypothetical protein Mfla_2027 [Methylobacillus flagellatus KT]
 gi|91710366|gb|ABE50294.1| conserved hypothetical protein [Methylobacillus flagellatus KT]
          Length = 314

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 13/109 (11%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
           + + K  LV L +   + G  D       S ++  V  +++          +        
Sbjct: 13  SKMTKGALVALMISIGLSGCGDKSNETKASQSLARVNGKEITVHQLNEELAR-------- 64

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
                N + A+     K+IL +L+    L+Q      ++     V   I
Sbjct: 65  ----ANVQPAQKEAATKQILQSLIDRQLLEQAALKAKVD-RDPNVMQAI 108


>gi|290580866|ref|YP_003485258.1| putative protease maturation protein precursor [Streptococcus
           mutans NN2025]
 gi|254997765|dbj|BAH88366.1| putative protease maturation protein precursor [Streptococcus
           mutans NN2025]
          Length = 333

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 77/245 (31%), Gaps = 32/245 (13%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            + +  M    +  ++   +       +   +  +V            S+  +T+ + + 
Sbjct: 28  NSKIATMKGDTITVADFYNEVKNSTASKQAVLSLLVSKVFEKQYGDKVSDKEVTKAYNEA 87

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKI----------------EISNDELQAEYEKNKEKY 264
              Y       ++   +   + +K+I                EI++   ++ Y+  K   
Sbjct: 88  AKYYGDSFSSALASRGYTKEDYKKQIRSEKLIEYAVKEEAKKEITDASYKSAYKDYKP-- 145

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
                 T + +   ++ +A    +  K  G  F ++A++  K          S       
Sbjct: 146 ----EVTAQVIQLDSEDKAKSVLEEAKADGADFAKIAKDNTK-GDKTEYSFDSGSTNLPS 200

Query: 324 SLADSIFSLAKKGDFTPVIHGSFG------YVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
            +  +  +L K G  + VI  S        Y I  ++         ++  KK +   +  
Sbjct: 201 QVLSAALNLDKDG-VSDVIKASDSTTYKPVYYIVKITKKT-DKNADWKAYKKRLKEIIVS 258

Query: 378 TKASE 382
            K ++
Sbjct: 259 QKLND 263


>gi|24379121|ref|NP_721076.1| foldase protein PrsA [Streptococcus mutans UA159]
 gi|46396905|sp|Q8CVC6|PRSA_STRMU RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|24377024|gb|AAN58382.1|AE014908_8 putative protease maturation protein precursor [Streptococcus
           mutans UA159]
          Length = 333

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 77/245 (31%), Gaps = 32/245 (13%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            + +  M    +  ++   +       +   +  +V            S+  +T+ + + 
Sbjct: 28  NSKIATMKGDTITVADFYNEVKNSTASKQAVLSLLVSKVFEKQYGDKVSDKEVTKAYNEA 87

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKI----------------EISNDELQAEYEKNKEKY 264
              Y       ++   +   + +K+I                EI++   ++ Y+  K   
Sbjct: 88  AKYYGDSFSSALASRGYTKEDYKKQIRSEKLIEYAVKEEAKKEITDASYKSAYKDYKP-- 145

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
                 T + +   ++ +A    +  K  G  F ++A++  K          S       
Sbjct: 146 ----EVTAQVIQLDSEDKAKSVLEEAKADGADFAKIAKDNTK-GDKTEYSFDSGSTNLPS 200

Query: 324 SLADSIFSLAKKGDFTPVIHGSFG------YVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
            +  +  +L K G  + VI  S        Y I  ++         ++  KK +   +  
Sbjct: 201 QVLSAALNLDKDG-VSDVIKASDSTTYKPVYYIVKITKKT-DKNADWKAYKKRLKEIIVS 258

Query: 378 TKASE 382
            K ++
Sbjct: 259 QKLND 263


>gi|291520406|emb|CBK75627.1| PPIC-type PPIASE domain [Butyrivibrio fibrisolvens 16/4]
          Length = 328

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 79/237 (33%), Gaps = 16/237 (6%)

Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---RA 226
                +N + D  K    E+ +  Y+ LN          +        +  K+ Y    +
Sbjct: 75  TSEFDTNTMTDSIKDLTIEHLTKVYV-LNLYAKDQEITLTEKEEKACQDAAKEYYDSLNS 133

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE--QLVFPNQKEAD 284
            E         DV    +K  I++   +   +   E+    E R +E   L   ++K+A+
Sbjct: 134 SERSFTGVRKKDVVSAYEKYAIASKVYKELMDSVDEEVSEDEARVMEAFVLFVSDEKKAE 193

Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           E    +  G  F +LA      L    +     EY  D  +   +F+L    + +  I  
Sbjct: 194 EIQGMIDYGYTFERLAATY-TELDSYQVTFARGEYSSD--IDKVVFNLDTD-EVSGAISA 249

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
             GY      +         +E+ ++    +   +  + + +    LEE      ++
Sbjct: 250 DNGYYFFQCLDKYN------EELSEENKKVIIEKRRKQVLDDIVTDLEEKYFSDMNV 300


>gi|219122864|ref|XP_002181757.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407033|gb|EEC46971.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 115

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 269 IRTVEQLVFPNQKEADEAF----QSLKKG--KKFIQLAEEQ---GKSLSDISLGSFSKEY 319
            RT EQ+    ++   E      + + +G  + F + A  +   G   +   LG F    
Sbjct: 22  RRTGEQVTLSPEQARQELESYQHRIIAEGLDEAFPKYATSRSDCGSFSNQGDLGFFGPGQ 81

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
           +      ++ F+L + G+ + ++    G  + +
Sbjct: 82  M-QRPFEEAAFAL-QPGEMSGIVSSDSGVHLIY 112


>gi|326391780|ref|ZP_08213299.1| hypothetical protein TheetDRAFT_2540 [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992168|gb|EGD50641.1| hypothetical protein TheetDRAFT_2540 [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 238

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 48/171 (28%), Gaps = 18/171 (10%)

Query: 26  LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
             +  +     +     +  V    +  + F               G  + S   ++  +
Sbjct: 50  AFFKGNKDKLQIDKGDVIAEVNGIPIYNNEFELRK-----------GLTLASG-VQTDNI 97

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF--SHDVFVSRLAR 143
           D  IL  L+     +       ++     +   I +      + N++  +       ++ 
Sbjct: 98  DDYILQKLIKEKVQEYLANKYNIKVSQNEINAYIEKE---KKEFNEYPEAKKKLDELIST 154

Query: 144 EGINEKEYIDHYTK-MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
            G+ E EY + Y K    R  +       +    +   + K+       V 
Sbjct: 155 SGMTEDEYWNTYEKYNAKRILLFSKLYNSIIEEGIKSGRLKKAEEMTNDVQ 205


>gi|149183221|ref|ZP_01861666.1| YacD [Bacillus sp. SG-1]
 gi|148849054|gb|EDL63259.1| YacD [Bacillus sp. SG-1]
          Length = 123

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 41/115 (35%), Gaps = 34/115 (29%)

Query: 19  VVLFVPFLIWGL-------------SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
           V++ + F++ G                 L  ++G+ T  +VG + +   S++   ++  G
Sbjct: 11  VLISLVFILLGANVVTLIYFTKAEAGPGLAELAGAETAATVGGETISRESWMFEMEKRYG 70

Query: 66  MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                                K++L  L++   + Q  E   ++     +  E+A
Sbjct: 71  ---------------------KEVLRELINQKVMIQLAEKYDIKVTDEELDKEVA 104


>gi|296271089|ref|YP_003653721.1| hypothetical protein Tbis_3134 [Thermobispora bispora DSM 43833]
 gi|296093876|gb|ADG89828.1| hypothetical protein Tbis_3134 [Thermobispora bispora DSM 43833]
          Length = 201

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 50/164 (30%), Gaps = 12/164 (7%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
            V  + T   VG  ++  S      ++    +++    +   +    + L + +L  + +
Sbjct: 23  GVQQAGTAAYVGNYRISSSELDAQVREFHKALAR--NGMTERQLGFGLSLPQMVLYRMAN 80

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
                ++ +  G+     +V   +       G D +         L   GI      D  
Sbjct: 81  AKQFIEYGKRAGVTITQRQVDDTVIA----RGGDKEM-----EKILLVNGIPPSMRDDAI 131

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
             ML +  +V     G +         ++   +  +   +  N 
Sbjct: 132 RAMLIQQTLVQRLGAG-QDEESQNQAYRKLVEQADAAVPVRFNP 174


>gi|167950975|ref|ZP_02538049.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 93

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 8/67 (11%), Positives = 29/67 (43%)

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             AD++ ++ K       +   FG+ +  + + +     S   V+ ++  +++    ++ 
Sbjct: 4   PFADAVQAMEKGKYSEAPVKTQFGWHVILLEDSRDLPAPSLDAVRSELTTRLQQQVLADY 63

Query: 384 VKEDYKR 390
           ++E   +
Sbjct: 64  IQELRAK 70


>gi|116328356|ref|YP_798076.1| hypothetical protein LBL_1693 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331082|ref|YP_800800.1| hypothetical protein LBJ_1469 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121100|gb|ABJ79143.1| Hypothetical protein LBL_1693 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124771|gb|ABJ76042.1| Hypothetical protein LBJ_1469 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 411

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 85/283 (30%), Gaps = 50/283 (17%)

Query: 10  RTWVAKIFLVV---LFVPFLIWGLSDALF---SVSGSSTVVSVGRQKVPFSSFINSWKQE 63
           R  VA    ++   L + FL      + F   S   +     +G   +P   F  + +  
Sbjct: 14  RAIVAFFLFILVSGLIITFLPGDAEKSFFDVISGRSNLNAGKIGNDSIPMDYFQAAQRDC 73

Query: 64  LGMISQKIGFVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
                      +    A     L       + S     Q     G       +  E++  
Sbjct: 74  FFQYR-----NIAPSLAEDPSTLQSCAFQTIRSLVVTKQIANATGFSVSETGIREELSEE 128

Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
                        ++   +   G +E++                     +R   ++  Q 
Sbjct: 129 A----------RRIYRESVTGAGYSEED---------------------VRKPEVIYKQI 157

Query: 183 KRFYFENRSVDYI---VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
                    VD      L +  + +    ++  L    E     +R    + +SY    +
Sbjct: 158 LNSAPMQYRVDRKNASSLYDSLLNSDLKKTDGELAVQKESSSARFRL---RIVSYTDDQL 214

Query: 240 HEKEKK-IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           ++  +K I +S + L+ +YE  K++   P+    ++L F  +K
Sbjct: 215 NKLAEKEIPVSEEVLRVKYENEKKEGKLPKNPDGKELSFEERK 257


>gi|319408317|emb|CBI81970.1| conserved exported hypothetical protein [Bartonella schoenbuchensis
           R1]
          Length = 308

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 14/141 (9%), Positives = 41/141 (29%), Gaps = 17/141 (12%)

Query: 27  IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD 86
             G        + ++  ++V    +         +     + QK G            L 
Sbjct: 7   FTGAFFISSVFAQTTVAITVNGNPITNYDIQR--RIAFLKLQQKQGD-----------LS 53

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
            +  + L+     +  I+ + ++     +    A       + N  + D     L +  +
Sbjct: 54  AQARNELIDEMLKNIEIQRLNIDVSDNEINSAFANF----AEQNNMTVDQLSEMLNQTEV 109

Query: 147 NEKEYIDHYTKMLSRTDVVGM 167
            E+ +  + +  +    +V  
Sbjct: 110 TEEHFKAYISGQMGWGRLVNA 130


>gi|195999062|ref|XP_002109399.1| hypothetical protein TRIADDRAFT_21648 [Trichoplax adhaerens]
 gi|190587523|gb|EDV27565.1| hypothetical protein TRIADDRAFT_21648 [Trichoplax adhaerens]
          Length = 153

 Score = 44.6 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 27/112 (24%)

Query: 265 FSPEIRTVEQLVFP-----------------NQKEADEAFQSLKK----GK-KFIQLAEE 302
            S +      L+                   ++ +A +  Q  +K    G+    QLA E
Sbjct: 40  ASEDKVRASHLLVKHNESRRPSSWRQNEITRSKDDALKLIQEYRKKIVGGEITLGQLALE 99

Query: 303 QG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
                 +  +  LG F +  +      D+ ++L + G+ +  +    G  I 
Sbjct: 100 MSDCSSARKEGDLGFFGRGQMQKP-FEDATYAL-QIGELSEPVFTDSGIHII 149


>gi|241761719|ref|ZP_04759806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260752284|ref|YP_003225177.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|241374027|gb|EER63560.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258551647|gb|ACV74593.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 471

 Score = 44.6 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 36/401 (8%), Positives = 91/401 (22%), Gaps = 71/401 (17%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V    +  +     +   L       G V             +IL NL+      Q  
Sbjct: 73  AIVNGTIITNTDIEQRFALILASAG---GDVSRISEEDRNMARLQILRNLIDETLEIQEA 129

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
           +   +      +                    +F           + +            
Sbjct: 130 KANDIIITPTELDQ------------------IFEHYARNMKKTPEAFSADL-------- 163

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
                    +     ++           + +  L  R V    + SN  +     + K  
Sbjct: 164 --QAIGSSAKSVKRQVEA---------DMAWRRLLGRRVEPFVNISNEEVQNIINRMKAA 212

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
               EY               ++    +++Q   ++  ++  + E   +           
Sbjct: 213 KGKDEYHIAEIFFSANDTNRAEVRAKANKIQ---DQILQRGNTNERMGLF---------- 259

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                       F     E   +     +G    E +PD     ++      G     I 
Sbjct: 260 ----------SAFASQYSEASSAARGGDMGFIQAEQLPDALA--AVVKNMPVGSLMGPIE 307

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM------RITKASEKVKEDYKRLEEFLAL 397
              G+ I  +   +    +  ++    +               +++     +   + L  
Sbjct: 308 TPGGFSIVALLEKQQILGIDPKDAIVALKQIYVNFPPGTSQNVADEKTAKLRDATKELKG 367

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
             S+DEI+ +     +    +         + + A     +
Sbjct: 368 CGSVDEIAHKIGADVMSNDQISIRSMPPLLQNMVAKLQVGE 408


>gi|188586230|ref|YP_001917775.1| SurA domain [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350917|gb|ACB85187.1| SurA domain [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 255

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 4/126 (3%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
             V  V  +++ +     + +Q    +   I  +   +      L    ++ L+ G  L 
Sbjct: 46  DVVAVVNGEEIMYEELSQTKEQLAFQMQMPIDQLEEQDDEMMNELRDMAMEELIGGTLLA 105

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q  E  GL  D   V   + +     G+  +   +     LA+E +  ++  +  T+ L 
Sbjct: 106 QEAEAEGLTPDEEEVEKNLEQYTAQFGESEEEIEEN----LAQEDLTMEDLREDVTQSLM 161

Query: 161 RTDVVG 166
            T+++ 
Sbjct: 162 ITEIMD 167


>gi|145346556|ref|XP_001417752.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577980|gb|ABO96045.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 230

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 17/127 (13%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLAD 327
              +++ P Q  A    ++      F +LA    +         LG F +  +       
Sbjct: 79  DYAEMLTPYQDSAHTLERA------FAELARRYSECPTGSDGGDLGYFPRGEM-SRDFES 131

Query: 328 SIF-SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            +F S          +    G+ +  V +   +     ++ K+    +++  +   +  E
Sbjct: 132 VVFDSKTPLDAVVGPVETRNGWHVMLVHHRHLAD----EDAKE--RARLKSEEMKRERLE 185

Query: 387 DYKRLEE 393
             ++ +E
Sbjct: 186 RAEKQKE 192


>gi|289618583|emb|CBI54827.1| unnamed protein product [Sordaria macrospora]
          Length = 1145

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 64/179 (35%), Gaps = 16/179 (8%)

Query: 357  KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM-----DEISRREKIV 411
            KP+   +     +++     +  A E++++  +R+++      ++     ++   + + V
Sbjct: 948  KPASESNEATASQEVEQSEEVKAAQERIQKIVERIQKVADNVDNLKNNVVEKAGDKVEQV 1007

Query: 412  SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
                  V    ++             + +     +    SK+   ++ D       +KE 
Sbjct: 1008 EEKAEQVAEKAQEAAEPAKEKAAEAAEKVAEKAEEATEQSKEKVESVVDN------VKEK 1061

Query: 472  IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
            +  R    E+V     +  K  +  E+ + KA Q+  + ++  +  ++  +  G     
Sbjct: 1062 VAERA---EQVQEKAAE--KAEQVQEKAAEKAEQVQEKVAERAEQVQEKAQEAGEKAQE 1115



 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 62/171 (36%), Gaps = 9/171 (5%)

Query: 365  QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
            +EVK   A Q RI K  E++++    ++        +++   + + V      V    ++
Sbjct: 966  EEVK---AAQERIQKIVERIQKVADNVDNL--KNNVVEKAGDKVEQVEEKAEQVAEKAQE 1020

Query: 425  VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG--SYMWVQIKESIPARDRKLEEV 482
                         + +     +    SK+   ++ D     +  + ++       K E+V
Sbjct: 1021 AAEPAKEKAAEAAEKVAEKAEEATEQSKEKVESVVDNVKEKVAERAEQVQEKAAEKAEQV 1080

Query: 483  LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
                 +  K  +  E+V+ +A Q+  +  + G+  +++       +    +
Sbjct: 1081 QEKAAE--KAEQVQEKVAERAEQVQEKAQEAGEKAQEVVLEKADQVEKKAE 1129


>gi|297545628|ref|YP_003677930.1| hypothetical protein Tmath_2254 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843403|gb|ADH61919.1| conserved hypothetical protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 238

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 46/143 (32%), Gaps = 17/143 (11%)

Query: 25  FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
              +  +     +     +  V    +  + F    ++EL +          +   ++  
Sbjct: 49  LAFFKSNKDKLQIDKGDMIAEVNGIPIYKNEFE--LRKELTL----------APGVQTDN 96

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF--SHDVFVSRLA 142
           +D  IL  L+     +       +      +   I +      + N++  +       +A
Sbjct: 97  IDDYILQKLIKEKVQEYLASKYNIRVSERGINEYIEKE---KKEFNEYPEAKKKLDELIA 153

Query: 143 REGINEKEYIDHYTKMLSRTDVV 165
             G+ E EY + Y K  ++  ++
Sbjct: 154 ASGMTEDEYWNTYEKYNAKRILL 176


>gi|156048410|ref|XP_001590172.1| hypothetical protein SS1G_08936 [Sclerotinia sclerotiorum 1980]
 gi|154693333|gb|EDN93071.1| hypothetical protein SS1G_08936 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 179

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +     LG F +  +      ++ F+L K G+ + V+  + G  +  
Sbjct: 130 SSARKMGDLGFFGRGDM-QKEFEEAAFAL-KPGEVSHVVETASGLHLIE 176


>gi|311744923|ref|ZP_07718708.1| hypothetical protein ALPR1_00375 [Algoriphagus sp. PR1]
 gi|126577430|gb|EAZ81650.1| hypothetical protein ALPR1_00375 [Algoriphagus sp. PR1]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 72/227 (31%), Gaps = 27/227 (11%)

Query: 207 DPSNAVLTQWFEKY----------------KDNYRAPEYKRISYILFDVHEKEKKIEISN 250
           DP+   +  + ++Y                 ++                         + 
Sbjct: 57  DPNEEDIKAFIDQYLRQEVFYKEALALGLDHNDIIVKRRLAQKMEAVSNDLNAMLKPPTA 116

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-----EADEAFQSLKKGKKFIQ---LAEE 302
            +L+  Y  N   +  P   T +Q++F NQ+     E      +LK+GK+      L   
Sbjct: 117 ADLEDFYMANDSLFRLPTSYTFQQVLFTNQEPNWQQEFVTIQTALKEGKEIPTSRVLKLS 176

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                 DI +   ++ +  +   A  + SL         I   FG  +  +S    S   
Sbjct: 177 ISNDWKDIPINEINQSFGGE--FASKLGSLPLNQWV-GPISSGFGKHLVFISEKNDSQLA 233

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
            F+ +K  +  +       E  ++ +  L E   +  + D+I    K
Sbjct: 234 DFERIKSYVEKEFEYQTELEMQEQVFHDLLEKYPVKITSDKIPESIK 280


>gi|72110370|ref|XP_788025.1| PREDICTED: similar to peptidyl-prolyl cis/trans isomerase
           [Strongylocentrotus purpuratus]
 gi|115972960|ref|XP_001189684.1| PREDICTED: similar to peptidyl-prolyl cis/trans isomerase
           [Strongylocentrotus purpuratus]
          Length = 152

 Score = 44.6 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 24/84 (28%), Gaps = 10/84 (11%)

Query: 276 VFPNQKEADEAF----QSLKKGK----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +   + +A +        +  G            +   +     LG F +  +      +
Sbjct: 67  ITRTKDDALQILKGHRAKIVAGDVTLGDLASTESDCSSAHKKGDLGFFGRNQMQKP-FEE 125

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIA 351
           + F L + G  +  +    G  I 
Sbjct: 126 ASFKL-EVGQMSDPVFTDSGIHII 148


>gi|330689731|pdb|3RGC|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein
           Cj1289 Are Two Structurally Related Sura-Like Chaperones
           In The Human Pathogen Campylobacter Jejuni
 gi|330689732|pdb|3RGC|B Chain B, The Virulence Factor Peb4 And The Periplasmic Protein
           Cj1289 Are Two Structurally Related Sura-Like Chaperones
           In The Human Pathogen Campylobacter Jejuni
          Length = 252

 Score = 44.2 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 72/179 (40%), Gaps = 19/179 (10%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
           +E+++ N++    KR  Y          K + S+D  +  +E+NK+K+           +
Sbjct: 86  YEQFRTNFKKDLEKRKLYEKI---ASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYL 142

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
             N +  +    + K       + + Q  SL+  +        +  + +          G
Sbjct: 143 SNNPQTLENIKNTKK------TILKPQNASLNTSNADPRLLGLLSQIPV----------G 186

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
            F+PV++G  GY +  V +   + T  +++VK ++ N     +    +++ + +L   +
Sbjct: 187 SFSPVLNGKNGYELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKI 245



 Score = 43.8 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 67/215 (31%), Gaps = 57/215 (26%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK-KILDNLVSGAT 98
           ++  V V ++ +       +                     +++ +D+ K L  L++   
Sbjct: 1   NAIAVVVDKEPITTYDIDQTM--------------------KALKIDRNKALGVLINEKM 40

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
               ++ +G+  +   +   I +        NK + + F + L  +  + +++  ++ K 
Sbjct: 41  EISQMKQLGIVVNDLELDDAINKM----LAQNKTTLNAFKANLKSKNQSYEQFRTNFKKD 96

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L +  +                                       A  D S+    ++FE
Sbjct: 97  LEKRKLYEKIAS--------------------------------MAKTDFSDDGAKKFFE 124

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
           + KD +        +  L +  +  + I+ +   +
Sbjct: 125 QNKDKFTFYTQINANIYLSNNPQTLENIKNTKKTI 159


>gi|156323209|ref|XP_001618381.1| hypothetical protein NEMVEDRAFT_v1g9343 [Nematostella vectensis]
 gi|156198699|gb|EDO26281.1| predicted protein [Nematostella vectensis]
          Length = 72

 Score = 44.2 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 287 FQSLKKGK-KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
            + +K G+     LA+   +   + +   LG F +  +       + FSL + G+ +  +
Sbjct: 3   QEQIKSGEATLEDLAKTESDCSSAKNGGDLGFFGRGQMQKP-FETATFSL-RVGEMSEPV 60

Query: 343 HGSFGYVIA 351
               G  + 
Sbjct: 61  FTDSGIHLI 69


>gi|255534612|ref|YP_003094983.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340808|gb|ACU06921.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 609

 Score = 44.2 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 7/154 (4%)

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS- 311
           L   Y KNK KY           +  +     E  + +K  K +  L  +    L+D   
Sbjct: 452 LTDYYNKNKSKYMWGNRADGRVAIIADDNLTKEIVKDIKNPKNWEALTAKYYGKLNDKKQ 511

Query: 312 -LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG--SFGYVIAHVSNIKPSFTVSFQEVK 368
            +  F K  + + +    +F+  K    T V         ++  +  I P   ++ +E  
Sbjct: 512 IIVHFEKGEMSEDA---DVFTKYKVPFKTGVHQTKMEQRTLVIAIEKILPPMQMTQEEAA 568

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
           + + + +   K  E + +   + +  +    S D
Sbjct: 569 ELLKDAVTEEKLREIIAQQKAKTQITVQPAFSAD 602


>gi|24641959|ref|NP_727770.1| mushroom body defect, isoform A [Drosophila melanogaster]
 gi|22832726|gb|AAF48362.2| mushroom body defect, isoform A [Drosophila melanogaster]
          Length = 2328

 Score = 44.2 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 53/419 (12%), Positives = 135/419 (32%), Gaps = 42/419 (10%)

Query: 162  TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN---AVLTQWFE 218
            + +    +   +  +L     +      R++   +   + +      S+   A + + +E
Sbjct: 1022 SKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYE 1081

Query: 219  KYKDNYRAP---EYKRISYILFDVHEKEKKIEISNDE----LQAEYEKNKEKYFSPEIRT 271
            +     +A    E K+  ++  + ++   +++    E    +  + E+ + K    +   
Sbjct: 1082 EQIKALQAKCDMEAKKNEHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLV 1141

Query: 272  VEQLVFPNQ-----KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
              Q +  +           A+++  K    +Q  +E G+ L D       KE      + 
Sbjct: 1142 DSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVN 1201

Query: 327  DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR--------IT 378
             +I +  K  D       S   ++ ++            +VK  I  Q +          
Sbjct: 1202 SAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKE 1261

Query: 379  KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
             A + V      L++       ++     +  +S DL     + + +       +  + +
Sbjct: 1262 SAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERK 1321

Query: 439  LLFRV---------FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
             L +V            D    K+    L D   + V++ +      ++L +V + ++  
Sbjct: 1322 ELAQVNSAFEAQTKLSDDLQREKESAQQLVDN--LKVELDKER----KELAQVKSVIEAQ 1375

Query: 490  WK----TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
             K      +  E      + L +E  KE K    +   + A    ++ + R     +  
Sbjct: 1376 TKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQL 1434


>gi|45551456|ref|NP_727769.2| mushroom body defect, isoform B [Drosophila melanogaster]
 gi|45446951|gb|AAN09583.2| mushroom body defect, isoform B [Drosophila melanogaster]
          Length = 2520

 Score = 44.2 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 53/419 (12%), Positives = 135/419 (32%), Gaps = 42/419 (10%)

Query: 162  TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN---AVLTQWFE 218
            + +    +   +  +L     +      R++   +   + +      S+   A + + +E
Sbjct: 1022 SKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYE 1081

Query: 219  KYKDNYRAP---EYKRISYILFDVHEKEKKIEISNDE----LQAEYEKNKEKYFSPEIRT 271
            +     +A    E K+  ++  + ++   +++    E    +  + E+ + K    +   
Sbjct: 1082 EQIKALQAKCDMEAKKNEHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLV 1141

Query: 272  VEQLVFPNQ-----KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
              Q +  +           A+++  K    +Q  +E G+ L D       KE      + 
Sbjct: 1142 DSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVN 1201

Query: 327  DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR--------IT 378
             +I +  K  D       S   ++ ++            +VK  I  Q +          
Sbjct: 1202 SAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKE 1261

Query: 379  KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
             A + V      L++       ++     +  +S DL     + + +       +  + +
Sbjct: 1262 SAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERK 1321

Query: 439  LLFRV---------FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
             L +V            D    K+    L D   + V++ +      ++L +V + ++  
Sbjct: 1322 ELAQVNSAFEAQTKLSDDLQREKESAQQLVDN--LKVELDKER----KELAQVKSVIEAQ 1375

Query: 490  WK----TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
             K      +  E      + L +E  KE K    +   + A    ++ + R     +  
Sbjct: 1376 TKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQL 1434


>gi|163759133|ref|ZP_02166219.1| hypothetical protein HPDFL43_05195 [Hoeflea phototrophica DFL-43]
 gi|162283537|gb|EDQ33822.1| hypothetical protein HPDFL43_05195 [Hoeflea phototrophica DFL-43]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 21/176 (11%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
           + V +Q +   S   + +     + +  G            L  K  + L+  +   Q  
Sbjct: 8   IVVNKQAIT--SVDIARRVAFLRLQRTGG-----------NLQAKAREQLIEESLKYQEA 54

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS--- 160
             I       ++    AR     GK N  S       L + G+  + + D     +S   
Sbjct: 55  LRIRAVVSQAQIDASYARF----GKSNNLSVKQLNQVLNQAGVTPQHFKDFIRVQMSWPR 110

Query: 161 -RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
               + G   GGM   +L+    +R   +  + +YI+     V      SNA L  
Sbjct: 111 VVQALEGTSGGGMSTQDLVSKMLERGDDKPSTTEYILQQVIFVVPSNKRSNATLNA 166


>gi|42521061|ref|NP_966976.1| hypothetical protein WD1266 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410802|gb|AAS14910.1| hypothetical protein WD_1266 [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 399

 Score = 44.2 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 49/171 (28%), Gaps = 19/171 (11%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +                   I  +  ++         ++L  L+    +   
Sbjct: 42  VADVNGEPISNLDIEKRIN--------FINSLFGTQSVNQKEAKPQVLRELIDEIIIINE 93

Query: 103 IEDIGLEADHGRVWGEIA--RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
            + + ++  +  +   I    +  F  K N+         + +  I+           L 
Sbjct: 94  AQRLNIKLSNEELDNAIMLFLTQSFKLKANEVD-----QYIEKHNIDLGILRKQIKCQLL 148

Query: 161 RTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
              ++ +  V  +  S+  +D  KR   +    DY++     +       +
Sbjct: 149 WGKIIEVRIVPFINISDKEVDDVKR---QTEKPDYLITFQEFIIPDQKDKD 196


>gi|148270134|ref|YP_001244594.1| hypothetical protein Tpet_1000 [Thermotoga petrophila RKU-1]
 gi|281412524|ref|YP_003346603.1| hypothetical protein Tnap_1102 [Thermotoga naphthophila RKU-10]
 gi|147735678|gb|ABQ47018.1| hypothetical protein Tpet_1000 [Thermotoga petrophila RKU-1]
 gi|281373627|gb|ADA67189.1| conserved hypothetical protein [Thermotoga naphthophila RKU-10]
          Length = 581

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 70/194 (36%), Gaps = 21/194 (10%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKI-EISNDELQAEYEKNKEKYFSP-EIRTVEQ 274
           +EK    Y  P+ +    +   + + ++K+  ++ DE++  +E+NKE      +   +E 
Sbjct: 156 YEKN---YLEPQIR----VQLTIKKVQEKVGVVTEDEIKKYFEENKEDLQKQYDRVDIEA 208

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           + F +   A            F + A     ++   S  + ++   PD  +  ++FS A 
Sbjct: 209 VSFDSSSTAQGFIAK-ASEVGFDEAASSMNVTVQPFS--NATRGIFPD-EIDTALFS-AT 263

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSF-----QEVKKDIANQMRITKASEKVKEDYK 389
            G           + +  V     S    F      +   D+  ++   K  + ++E  K
Sbjct: 264 PGSIVGPFFFLDQWYVFRVK--TSSVLTDFNAFENSDAYSDVKTKLEQEKFQKWLEEFMK 321

Query: 390 RLEEFLALGTSMDE 403
                 A    + E
Sbjct: 322 EENLSYAFNDQVLE 335


>gi|237756622|ref|ZP_04585137.1| SurA N- domain family [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691220|gb|EEP60313.1| SurA N- domain family [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 290

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 49/139 (35%), Gaps = 11/139 (7%)

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
           DK+  + +++   L Q    +G+      +   +         +     + F  +L   G
Sbjct: 63  DKEAEEKIINSFLLAQQARRMGISVSPREIDNAVLNIA---KANGIDDLETFKKKLEDSG 119

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I+  +  +   + +    ++ +++   + S  +++  K      R + +I  N      +
Sbjct: 120 ISYSKLKEFLARDMLANRLLHLYMRE-KASKGIIEGDKEDVKTVRLI-FISKNRPDYQEV 177

Query: 206 ADPSNAVLTQWFEKYKDNY 224
               +  L       K+N+
Sbjct: 178 LSKLDKEL------NKNNF 190


>gi|283856448|ref|YP_163047.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|283775452|gb|AAV89936.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 435

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 36/401 (8%), Positives = 91/401 (22%), Gaps = 71/401 (17%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
             V    +  +     +   L       G V             +IL NL+      Q  
Sbjct: 37  AIVNGTIITNTDIEQRFALILASAG---GDVSRISEEDRNMARLQILRNLIDETLEIQEA 93

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
           +   +      +                    +F           + +            
Sbjct: 94  KANDIIITPTELDQ------------------IFEHYARNMKKTPEAFSADL-------- 127

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
                    +     ++           + +  L  R V    + SN  +     + K  
Sbjct: 128 --QAIGSSAKSVKRQVEA---------DMAWRRLLGRRVEPFVNISNEEVQNIINRMKAA 176

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
               EY               ++    +++Q   ++  ++  + E   +           
Sbjct: 177 KGKDEYHIAEIFFSANDTNRAEVRAKANKIQ---DQILQRGNTNERMGLF---------- 223

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                       F     E   +     +G    E +PD     ++      G     I 
Sbjct: 224 ----------SAFASQYSEASSAARGGDMGFIQAEQLPDALA--AVVKNMPVGSLMGPIE 271

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM------RITKASEKVKEDYKRLEEFLAL 397
              G+ I  +   +    +  ++    +               +++     +   + L  
Sbjct: 272 TPGGFSIVALLEKQQILGIDPKDAIVALKQIYVNFPPGTSQNVADEKTAKLRDATKELKG 331

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
             S+DEI+ +     +    +         + + A     +
Sbjct: 332 CGSVDEIAHKIGADVMSNDQISIRSMPPLLQNMVAKLQVGE 372


>gi|331086144|ref|ZP_08335226.1| hypothetical protein HMPREF0987_01529 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406303|gb|EGG85817.1| hypothetical protein HMPREF0987_01529 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 353

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            +++K+G  F + A+E  K L   ++    +   PD  L      L + G+ + VI    
Sbjct: 213 QKAVKEGADFARTAKE--KELEVKTMTFDEETTTPDEGLMTKANKLGE-GEVSEVIETDS 269

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY +  V+++           K+ IA + +  +  +  +E  K ++
Sbjct: 270 GYYVLKVTSLLDREAT--DAEKESIAEERKEKQYKDLCEEWKKDVK 313


>gi|148284256|ref|YP_001248346.1| hypothetical protein OTBS_0439 [Orientia tsutsugamushi str.
           Boryong]
 gi|146739695|emb|CAM79505.1| conserved hypothetical protein [Orientia tsutsugamushi str.
           Boryong]
          Length = 291

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 39/125 (31%), Gaps = 13/125 (10%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           +   FL ++ V        ++  +++ +  V  V    +         K    +   +  
Sbjct: 4   ILTFFLTIIVVC-------NSSGALAATKIVAIVDGTPITSHQLDKFGKVITFLHRSQSL 56

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA-RSPLFHGKDNK 131
             ++     ++      L+ L+         +  G+EA    +   IA      +  D  
Sbjct: 57  TSISDSELTTI-----ALEALIDRVIFLNEAKRYGIEASQDEINQFIAMEEKAINLPDQY 111

Query: 132 FSHDV 136
           F + +
Sbjct: 112 FKYAI 116


>gi|71891915|ref|YP_277645.1| peptidyl-prolyl cis-trans isomerase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|122070620|sp|Q493R5|SURA_BLOPB RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|71796021|gb|AAZ40772.1| peptidyl-prolyl cis-trans isomerase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 425

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 106/326 (32%), Gaps = 67/326 (20%)

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
           +KILD L+    + Q  +   +  DH ++   I      +  D  F    F + L   G+
Sbjct: 68  QKILDQLIIDNLIFQISDQQKINIDHTQLNQMINCI--LNLYDMTFD--KFRAYLYDIGL 123

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY---IVLNNRHVP 203
           N +++     + + +  +    +      ++L ++  +   ++  +D      L +    
Sbjct: 124 NYEKFYFQQYQHMLKKQICDHVMHDRA--HILTNEINKIVKKSNIIDINKQFKLRHITFS 181

Query: 204 AIADPSNAVL------------TQWFEKYKDN----YRAPEYKRISYILFDVHEKEKKIE 247
               P+ + +             + F          Y      +I  +        K I 
Sbjct: 182 LPIQPTPSQIDRIEYFARLLIKKKEFNNNIKELIRTYSNKNIIQIIKVHETEWVSWKDIP 241

Query: 248 ISNDELQAEYEK--NKEKYFSP------------EIRTVEQLVFP-NQKEAD-------- 284
           I    +  +Y +  NK     P            +    +Q++ P  +  A         
Sbjct: 242 I----IFDKYLQTINKGDVIGPIISCDGIHIVEIQDIRYKQIMLPVTKVTAKIFGIQNSC 297

Query: 285 ---EAFQSL--------KKGKKFIQLAEEQGKSL--SDISLGSFSKE-YIPDVSLADSIF 330
                 + L        K    F  + +E+ K +  +     +  K+    + S+  ++ 
Sbjct: 298 ENISIVEQLLQIKENMEKSNTAFNMMIKEKSKDICFNHYEENTICKDLDDFEPSIRKALS 357

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNI 356
           SL K  + +  +H S G+ +  + +I
Sbjct: 358 SL-KSNEISIPVHTSCGWRLIQLIDI 382


>gi|325181724|emb|CCA16179.1| peptidylprolyl cistrans isomerase NIMAinteracting 1 putative
           [Albugo laibachii Nc14]
          Length = 187

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 296 FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           F ++A+E+     +     LG F++  +   S   + F+L +    + ++    G  + 
Sbjct: 127 FEEIAKEESDCSSAKRGGDLGMFTRGQM-QASFEAAAFAL-EVNQLSDIVESDSGIHLI 183


>gi|239627468|ref|ZP_04670499.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517614|gb|EEQ57480.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 335

 Score = 44.2 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 72/203 (35%), Gaps = 25/203 (12%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEY------EKNKEKYFSPE----------IRTVEQLV 276
            Y      +    ++++  E+   Y      +K   +    E          +  V+Q+V
Sbjct: 130 EYYRGLSEQDRDYMDVTEHEVYDLYCEYYRADKLVAELTKDENLEVSDAEAKVIQVQQIV 189

Query: 277 FPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
             +++ A++    ++     F  +A    +S  D+ +    +      +  +  FSL + 
Sbjct: 190 LDSRERAEDILSQVQQANADFANIA---SRSSRDVQINHTLEWSSQMDTREEVAFSLEQN 246

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
            + + ++     Y I   +N       +    +K +  Q + T+A   + E + + E  +
Sbjct: 247 -EISDILELDGKYYILKCTNAYDEEATA---ARKSMLAQEKKTRAFLAIYEPFVK-EHTV 301

Query: 396 ALGTSMDEISRREKIVSIDLPLV 418
            L  ++DEI    K         
Sbjct: 302 KLKDNLDEIVDFSKGEGCTTDNF 324


>gi|157736302|ref|YP_001488985.1| hypothetical protein Abu_0031 [Arcobacter butzleri RM4018]
 gi|157698156|gb|ABV66316.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
          Length = 274

 Score = 44.2 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 88/242 (36%), Gaps = 23/242 (9%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN------- 210
            + RT VV         S L+         +  ++   +            SN       
Sbjct: 36  DIERTMVVNKIPKNEAVSYLIDKILYDQLVQEYNITADIFEVNDYIEKLANSNGMDIYAF 95

Query: 211 -AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI-SNDELQAEYEKNKEKYFSPE 268
            A++ Q +  Y   +       +          + ++ I +++++Q  YEKN+ KY + +
Sbjct: 96  KAIIKQEYPDY-SVFENEAKNTVIRQKLVQKLVKGQLAIATDEDMQLYYEKNRNKYLTAK 154

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
              V Q    +++               +++A+      S++   S         +    
Sbjct: 155 TFDVTQYSSTSKEA-------------LMEVAKNPIIIPSEVQRTSLKLNTEDIQAQLQY 201

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           + +  K   FTP+   +  YV   ++  + +  +S++ VK  I N + + +  + +K+ +
Sbjct: 202 LLNGTKVNSFTPIFTANKQYVTFFITKKEGTAPLSYESVKARIFNDIMMNREQKYLKDYF 261

Query: 389 KR 390
           ++
Sbjct: 262 EK 263


>gi|168335024|ref|ZP_02693138.1| putative protein export chaperone [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 339

 Score = 44.2 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 57/185 (30%), Gaps = 24/185 (12%)

Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--------- 282
           +  ++   +   ++     +E+  + E+N   Y +    TV+ ++     +         
Sbjct: 157 LEIVVDVQNAIAEEYTPPAEEIATKVERNLGAYQT---VTVKHILLAKTDKDGNELSDKI 213

Query: 283 -------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
                  A    Q +K G+   +LA +  +  +D               L    F  A  
Sbjct: 214 KAEKLSLAKNLLQRVKDGEDIGRLAAQYSEDATDDDAKYIISPGDIGGKLERVAFQTADG 273

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSF-----QEVKKDIANQMRITKASEKVKEDYKR 390
           G +  VI   +GY +    +   S             KK  A ++    A +   E    
Sbjct: 274 GIWNEVIESPYGYHVGKTISHNTSTADQLSKTYIATAKKVYAAEVVTQFAGQATVELTDA 333

Query: 391 LEEFL 395
            +  +
Sbjct: 334 YDAIV 338


>gi|308511423|ref|XP_003117894.1| CRE-LAM-2 protein [Caenorhabditis remanei]
 gi|308238540|gb|EFO82492.1| CRE-LAM-2 protein [Caenorhabditis remanei]
          Length = 1550

 Score = 44.2 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 50/375 (13%), Positives = 122/375 (32%), Gaps = 49/375 (13%)

Query: 195  IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE---YKRISYILFDVHEKEKKIEISND 251
              +N+         ++   T+ +E  K   +  E     R               ++++ 
Sbjct: 1074 APVNDTKFDEKVKETSQAATEVWEAVKQ--KTKEGGGTIRTKSKAIKEEIIAALEKLTSI 1131

Query: 252  ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDI 310
            +    + +        ++R  E ++   ++E +     L+ +G++  Q+A    +   + 
Sbjct: 1132 DESVAHARVGADAAENDMRRWEIIIENARREIENVLHYLETEGEERAQIALAASQKYGEQ 1191

Query: 311  SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
            S        +   +  +S   L +  D   +   +             + T + +E    
Sbjct: 1192 SK---RMSDLAQGTREESEKHLKQAADIERLSEQA-----------IANATQANKEASDA 1237

Query: 371  IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG-KDVKGKE 429
            I    +I+K   ++KE   ++ E ++    + E  ++    + +L  V     + VK   
Sbjct: 1238 IYGGEQISKQIAELKEKQNQINESISRTLDLAEEQKKSAEEANNLAAVSLTNVEAVKIPS 1297

Query: 430  VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
            V     K  +   +   ++ +         +               DR + +   +    
Sbjct: 1298 VDPKEMKNDVAGVLEEAENLVDSSVKENSANDELF--------EEIDRSVADARNE---- 1345

Query: 490  WKTVKTAEEVSSKANQLVLEYSK-----------EGKNFRDIGKNLGA--SLLTTNQINR 536
             ++ +  + V   A+QL+LE  K             K  +D    L          + +R
Sbjct: 1346 LQSSQDQQRV---ADQLMLELEKARERIVESVSTADKTLKDAEAALATLEEFSAKIEQSR 1402

Query: 537  MDNENKFFGYDGISQ 551
             D   +F G D I++
Sbjct: 1403 NDAVAEFSGVDAINE 1417


>gi|58698186|ref|ZP_00373108.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630920|ref|YP_002727711.1| hypothetical protein WRi_012370 [Wolbachia sp. wRi]
 gi|58535336|gb|EAL59413.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592901|gb|ACN95920.1| hypothetical protein WRi_012370 [Wolbachia sp. wRi]
          Length = 381

 Score = 44.2 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 6/78 (7%), Positives = 21/78 (26%), Gaps = 8/78 (10%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V  V  + +                   I  +  ++         ++L  L+    +   
Sbjct: 24  VADVNGEPISNLDIEKRIN--------FINSLFGTQSVNQKEAKPQVLRELIDEIVIINE 75

Query: 103 IEDIGLEADHGRVWGEIA 120
            + + ++  +  +   I 
Sbjct: 76  AQRLNIKLSNEELDNAIM 93


>gi|302865388|ref|YP_003834025.1| hypothetical protein Micau_0885 [Micromonospora aurantiaca ATCC
           27029]
 gi|302568247|gb|ADL44449.1| hypothetical protein Micau_0885 [Micromonospora aurantiaca ATCC
           27029]
          Length = 256

 Score = 43.8 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 7/180 (3%)

Query: 36  SVSGSSTVVSVGRQKVPFSS----FINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
             S       VG  +         + ++ +Q    +  +     +    RS    + +L+
Sbjct: 24  GRSAPDVAAYVGDSRYSVDRVDAIYEDAQRQYAEAVRSQSPQTPSPAELRSSVTRQDVLN 83

Query: 92  NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
            LV+     +   D GL+        +I +              ++   +   G  ++  
Sbjct: 84  LLVAIDLGKRVAADKGLQVTDQISPEQIQQ--ALRMPATTEYTKLWGEWVDLSGTLQQSL 141

Query: 152 IDHYTKMLSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
                   S   V       G     L +DQ ++ + E   V      +  +   A+ S+
Sbjct: 142 PPADLSDESLMAVYHALEKTGAIQPGLSIDQVRQAFGEAGFVRTATALSSALQEQAEKSD 201


>gi|240850229|ref|YP_002971622.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
 gi|240267352|gb|ACS50940.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
          Length = 324

 Score = 43.8 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 17/128 (13%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +S VV+V    +               + QK G            L  +    L+     
Sbjct: 42  TSIVVTVNGNPITNYDIQRRL--AFLRLQQKQG-----------NLVAQAKKELIDEKLK 88

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           +  I+   +E  +  V         F  ++N  + D     L +  I  + + D+    +
Sbjct: 89  NIEIKRRNIEVSNDEVDRAFEN---FATQNN-MTIDQLNQILIQTEITVQHFKDYIRGQI 144

Query: 160 SRTDVVGM 167
               +V  
Sbjct: 145 GWGRLVSA 152


>gi|282890249|ref|ZP_06298779.1| hypothetical protein pah_c014o131 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499906|gb|EFB42195.1| hypothetical protein pah_c014o131 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 805

 Score = 43.8 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 10/129 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV--SVGRQKVPFSSFIN 58
           ML   R   R     I  V + + F  +G  + + S  G+      +V   KV  +   N
Sbjct: 1   MLHFFRTYERYLYIVITFV-IVITFSFFGTYNEILSSGGTDETAFYTVDGSKVSRTDVQN 59

Query: 59  SWKQELGMISQ--KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
                          G +          + K  L   ++   +  +  D+        + 
Sbjct: 60  IVHFISTDSEDKLSFGGMWGPNFLNDGVIKKDFLQTGLAEILILHYQNDLK-----EELQ 114

Query: 117 GEIARSPLF 125
            ++ +   F
Sbjct: 115 KKLEKEKRF 123


>gi|114621527|ref|XP_001146817.1| PREDICTED: WD repeat domain 67 isoform 1 [Pan troglodytes]
          Length = 1056

 Score = 43.8 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 90/285 (31%), Gaps = 28/285 (9%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK---ILDNL-VSGATL 99
             V +Q+V   ++    ++ L    +    ++  E  + +   ++   +   L V    L
Sbjct: 704 AKVDQQRVEDEAWYQK-QELLRKAEETRREMLLQEEEKMIQQRQRLAAVKRELKVKEMHL 762

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
                   L+    +      +       D++    V++             I    + L
Sbjct: 763 QDAARRRFLKLQQDQ------QEMELRRLDDEIGRKVYMR---------DREIAATARDL 807

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY----IVLNNRHVPAIADPSNAVLTQ 215
               +       +   NL  +Q           D     + L       + +       +
Sbjct: 808 EMRQLELESQKRLYEKNLTENQEAVAKEMRADADAYRRKVDLEEHMFHKLIEAGETQSQK 867

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
             +  K+N    E   ++       +   K +  + +    Y++  +       + +E +
Sbjct: 868 TQKVIKENLAKAEQACLNTDWQI--QSLHKQKCDDLQRNKCYQEVAKLLRENRRKEIEII 925

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
               ++EA +  +   +GK+F   + ++  +LSD S   F K+ I
Sbjct: 926 NAMVEEEAKKWKE--AEGKEFRLRSAKKASALSDASRKWFLKQEI 968


>gi|170288920|ref|YP_001739158.1| hypothetical protein TRQ2_1130 [Thermotoga sp. RQ2]
 gi|170176423|gb|ACB09475.1| conserved hypothetical protein [Thermotoga sp. RQ2]
          Length = 581

 Score = 43.8 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 70/194 (36%), Gaps = 21/194 (10%)

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKI-EISNDELQAEYEKNKEKYFSP-EIRTVEQ 274
           +EK    Y  P+ +    +   + + ++K+  ++ DE++  +E+NKE      +   +E 
Sbjct: 156 YEKN---YLEPQIR----VQLTIKKVQEKVGVVTEDEIKKYFEENKEDLQKQYDRVDIEA 208

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           + F +   A            F + A     ++   S  + ++   PD  +  ++FS A 
Sbjct: 209 VSFDSSSTAQGFIAK-ASEVGFDEAASSMNVTVQPFS--NATRGIFPD-EIDTALFS-AT 263

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSF-----QEVKKDIANQMRITKASEKVKEDYK 389
            G           + +  V     S    F      +   D+  ++   K  + ++E  K
Sbjct: 264 PGSIVGPFFFLDQWYVFRVK--TSSVLTDFNAFENSDAYSDVKTKLEQEKFQKWLEEFMK 321

Query: 390 RLEEFLALGTSMDE 403
                 A    + E
Sbjct: 322 EENLSYAFNDQVLE 335


>gi|268316846|ref|YP_003290565.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
 gi|262334380|gb|ACY48177.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
          Length = 291

 Score = 43.8 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 88/258 (34%), Gaps = 39/258 (15%)

Query: 156 TKMLSRT-DVVGMFVGGMRPSNLLLDQAK--RFYFENRSVDYIVLNNRHVPAIADPSNAV 212
            + L+R   ++ + +     S  +++Q    +  ++      +             ++  
Sbjct: 36  REELARALQLLPVQMDSTEASQQVIEQWITNQLLYQEALRRGLR------------NDPE 83

Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-IRT 271
           + +  E+ + +          Y   +  E+ +       E+QA YE+ KE+    E    
Sbjct: 84  VQRLLEENERSVLISALLEQLYQEEEAGEEGQPGP---AEVQAYYERYKEQLRLREPYVR 140

Query: 272 VEQLVFPNQKEADEAFQSLKKGKK-----FIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
           V  L    +++A    ++L++ +      +  L +   ++  +  L   +  Y P+  L 
Sbjct: 141 VRYLHTTREEDARTVHRTLQETRAVLDSLWEALVDRYAENPEEARL--LAGRYFPESRLF 198

Query: 327 DSI--------FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS-----FQEVKKDIAN 373
            +             + GD  P+I     Y +  +    P+ T+      + EV +    
Sbjct: 199 TAAVLAPLREALQRLRNGDVAPIIEIDGHYHVLQLVERLPAGTLPELRWIYDEVAQQARI 258

Query: 374 QMRITKASEKVKEDYKRL 391
           Q R    +  V+      
Sbjct: 259 QARKQIYARLVQRLRNEA 276


>gi|114621525|ref|XP_001146960.1| PREDICTED: WD repeat-containing protein 67 isoform 3 [Pan
           troglodytes]
          Length = 1066

 Score = 43.8 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 90/285 (31%), Gaps = 28/285 (9%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK---ILDNL-VSGATL 99
             V +Q+V   ++    ++ L    +    ++  E  + +   ++   +   L V    L
Sbjct: 714 AKVDQQRVEDEAWYQK-QELLRKAEETRREMLLQEEEKMIQQRQRLAAVKRELKVKEMHL 772

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
                   L+    +      +       D++    V++             I    + L
Sbjct: 773 QDAARRRFLKLQQDQ------QEMELRRLDDEIGRKVYMR---------DREIAATARDL 817

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY----IVLNNRHVPAIADPSNAVLTQ 215
               +       +   NL  +Q           D     + L       + +       +
Sbjct: 818 EMRQLELESQKRLYEKNLTENQEAVAKEMRADADAYRRKVDLEEHMFHKLIEAGETQSQK 877

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
             +  K+N    E   ++       +   K +  + +    Y++  +       + +E +
Sbjct: 878 TQKVIKENLAKAEQACLNTDWQI--QSLHKQKCDDLQRNKCYQEVAKLLRENRRKEIEII 935

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
               ++EA +  +   +GK+F   + ++  +LSD S   F K+ I
Sbjct: 936 NAMVEEEAKKWKE--AEGKEFRLRSAKKASALSDASRKWFLKQEI 978


>gi|254481305|ref|ZP_05094550.1| hypothetical protein GPB2148_1778 [marine gamma proteobacterium
           HTCC2148]
 gi|214038468|gb|EEB79130.1| hypothetical protein GPB2148_1778 [marine gamma proteobacterium
           HTCC2148]
          Length = 310

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 11/174 (6%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            + I  I   +         +  E+ AE+EK +E+   P   ++E + F  ++E + A  
Sbjct: 133 RRLIQIIEQLMLASNPPGAATEAEILAEFEKRREELRRPPRFSIEHIYFNREREGEIAAA 192

Query: 289 SLKKGKKFIQLAEEQGKSLSDISL-GSFSKEYIPDV---SLADS-IFSLAKK----GDFT 339
               G++   L  EQ + LS   L G   K   P+        + + +L +     G + 
Sbjct: 193 IATIGEQ--NLGPEQARELSSPFLPGYRFKYQTPEQLARHFGAAFVVNLEQTKPSAGQWV 250

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
             +  ++G    +V  ++PS   +  EV+  +   +     S  + +  +R+ E
Sbjct: 251 GPVRSTYGLHYVYVGELEPSRDATLDEVRAVLVRDIDSRARSTALLKSTQRMRE 304


>gi|154246064|ref|YP_001417022.1| putative signal peptide [Xanthobacter autotrophicus Py2]
 gi|154160149|gb|ABS67365.1| conserved hypothetical protein; putative signal peptide
           [Xanthobacter autotrophicus Py2]
          Length = 353

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 16/152 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGKKFIQLAE 301
           E +  EL A YEK +  Y  P+   V  +  P      + ++      ++ G +   +  
Sbjct: 194 EPTRAELSAWYEKRRAAYDIPD--LVSFIAVPFTGADAEAQSRAVLDEIRAGTEPEDV-- 249

Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP--VIHGSFGYVIAHVSNIKPS 359
                L  +  G   ++ + + S   +       G      V+    G+ +  + +  P 
Sbjct: 250 ----QLRALIFGQRPRQTL-EPSFGKAFVDQIVAGPSGEWRVLSSDAGWYVVRLDSFVPG 304

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             V   EV   +A   +  +         + L
Sbjct: 305 RRVELDEVSSQVAQAWKDERRRVLAIAATRDL 336



 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 7/147 (4%)

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
           +V +    ++       +   D   L  F+A+  +  +   + + V  ++       +DV
Sbjct: 191 DVNEPTRAELSAWYEKRRAAYDIPDLVSFIAVPFTGADAEAQSRAVLDEIRA-GTEPEDV 249

Query: 426 KGKEVAAIPYKEQLLFRVFGKDD------PLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
           + + +       Q L   FGK          S +  V   D  +  V++   +P R  +L
Sbjct: 250 QLRALIFGQRPRQTLEPSFGKAFVDQIVAGPSGEWRVLSSDAGWYVVRLDSFVPGRRVEL 309

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQL 506
           +EV + V + WK  +      +    L
Sbjct: 310 DEVSSQVAQAWKDERRRVLAIAATRDL 336


>gi|313633259|gb|EFS00126.1| foldase protein PrsA 1 [Listeria seeligeri FSL N1-067]
          Length = 102

 Score = 43.8 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQMRI 377
            D +   + ++L K  D + ++  S+GY +  +       T +  + K     I +Q+  
Sbjct: 1   MDEAFEKAAYALEKTDDVSGIVKTSYGYHLIQLVKKTDKTTYAKDKAKVKEAYIQSQLTS 60

Query: 378 TKASEKVKEDYKRLE 392
              +  +K++ K   
Sbjct: 61  ENMTAALKKELKAAN 75


>gi|315501933|ref|YP_004080820.1| hypothetical protein ML5_1129 [Micromonospora sp. L5]
 gi|315408552|gb|ADU06669.1| hypothetical protein ML5_1129 [Micromonospora sp. L5]
          Length = 256

 Score = 43.8 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 7/180 (3%)

Query: 36  SVSGSSTVVSVGRQKVPFSS----FINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
             S       VG  +         + ++ +Q    +  +     +    RS    + +L+
Sbjct: 24  GRSAPDVAAYVGDSRYSVDRVDAIYEDAQRQYAEAVRSQSPQTPSPAELRSSVTRQDVLN 83

Query: 92  NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
            LV+     +   D GL+        +I +              ++   +   G  ++  
Sbjct: 84  LLVAIDLGKRVAADKGLQVTDQISPEQIQQ--ALRMPATTEYTKLWGEWVDLSGTLQQSL 141

Query: 152 IDHYTKMLSRTDVVGMF-VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
                   S   V       G     L +DQ ++ + E   V      +  +   A+ S+
Sbjct: 142 PPADLSDESLMAVYHALEETGAIQPGLSIDQVRQAFGEAGFVRTATALSSALQEQAEKSD 201


>gi|260781755|ref|XP_002585966.1| hypothetical protein BRAFLDRAFT_255841 [Branchiostoma floridae]
 gi|229271040|gb|EEN41977.1| hypothetical protein BRAFLDRAFT_255841 [Branchiostoma floridae]
          Length = 101

 Score = 43.8 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 8/89 (8%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328
            V  ++   Q  A EA + L+ G KF ++A +  +  +   +  G          S    
Sbjct: 18  KVRHILCEKQSRALEAIEKLQAGMKFNEVAAQYSEDKAKQGVGTGVLIGGRYRGPSTTQ- 76

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                K     P I    GY +  +   K
Sbjct: 77  -----KPVYTNPPIRTKHGYHVIMIEGKK 100


>gi|291393661|ref|XP_002713463.1| PREDICTED: laminin, beta 2 [Oryctolagus cuniculus]
          Length = 1802

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 79/274 (28%), Gaps = 34/274 (12%)

Query: 376  RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
            R+ +   +  E  +R +  L    +  E   +      +L  +  + KD   +E A    
Sbjct: 1480 RVAETRRQAGEAQQRAQAALDKANASREQVEQAN---QELRELIQSVKDFLSQEGADPDS 1536

Query: 436  KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
             E +  RV     P S +    L            +I  R R L +V T + +    V+ 
Sbjct: 1537 IEMVATRVLELAIPASPEQIQHLA----------GAIAERVRSLADVDTILARTVGDVRR 1586

Query: 496  AEEVSSKANQLVLEY---SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
            AE++   A +         ++ +  +   +    +        R    +       + QV
Sbjct: 1587 AEQLLQDAQRARSRAEGEKQKAETVQAALEEAQRAQGAAQGAIRGAVADTQDTEQTLRQV 1646

Query: 553  FSGPVEMVKCFPIENGLSYVVFKVTNS-----------------KVGPVQEKDKFISYLT 595
                    +        +  +  +  +                   G  Q + +    L 
Sbjct: 1647 QERMAGTEQALSSAGERARQLDSLLEALKLKRAGNSLTASTAEETAGSAQGRAREAEQLL 1706

Query: 596  QMMNKDLLDSVIAYLKSQY-SVTVHDNLIQRYLD 628
            Q    D   +V A  + +   V       ++  D
Sbjct: 1707 QGPLSDRYQTVRALAERKAEGVLAAQARAEQLRD 1740


>gi|289579341|ref|YP_003477968.1| hypothetical protein Thit_2193 [Thermoanaerobacter italicus Ab9]
 gi|289529054|gb|ADD03406.1| hypothetical protein Thit_2193 [Thermoanaerobacter italicus Ab9]
          Length = 240

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 82/225 (36%), Gaps = 41/225 (18%)

Query: 7   KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST----------VVSVGRQKVPFSSF 56
           K  +  +  + L+ +    +I       + + G ++          +  VG  K+     
Sbjct: 3   KNRKILLMIVLLITILAASIITAAGSNPWFLLGKNSLKYEKDRDVIIAKVGNTKITKEDI 62

Query: 57  I-----NSWKQEL--GMISQKIGFVVNSERARSVGL-DKKILDNLVSGATLDQFIEDIGL 108
                 N +++E+    +S+     +N     SV +  K IL+ L+  A L +  +  GL
Sbjct: 63  EMQILFNKFQKEVLNRKLSELQNSNLNINSFLSVDVSRKDILNKLIDEAILYEEAQRQGL 122

Query: 109 EAD-HGR---------VWGEIARSPLFHGKDNKFSHD---VFVSRLAREGINEKEY---- 151
                           +   IA+      ++ K + +    F + +   G++E EY    
Sbjct: 123 NVTYDDAKKFMENTRYIMNAIAK-GELKCENQKEAMEEIYNFKAYIKGLGMSEDEYWNEI 181

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSN-----LLLDQAKRFYFENRS 191
           I +Y K+LS  ++    +  M   +      + +  +++  E R 
Sbjct: 182 IVYYQKILSIGNLKNKIISAMSEKDKNDINKVNEFFEKYKNELRK 226


>gi|332202835|gb|EGJ16904.1| PPIC-type PPIASE domain protein [Streptococcus pneumoniae GA41317]
          Length = 153

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 14/147 (9%)

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
              E ++       + E   K     +     Y+K  ++Y      T + +   N+ +A 
Sbjct: 1   MTLETRKAQIRTSKLVELAVKKVAEAELTDEAYKKAFDEYTPD--VTAQIIRLNNEDKAK 58

Query: 285 EAFQSLKK-GKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKGDFT 339
           E  +  K  G  F QLA++          G      S        +  + F+L   G  +
Sbjct: 59  EVLEKAKAEGADFAQLAKDNSTDEKTKENGGEITFDSASTEVPEQVKKAAFALDVDG-VS 117

Query: 340 PVIH------GSFGYVIAHVSNIKPSF 360
            VI        S  Y I  ++      
Sbjct: 118 DVITATGTQAYSSQYYIVKLTKKTEKS 144


>gi|213418227|ref|ZP_03351293.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 86

 Score = 43.8 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
           ++   I D +  D++  L K G  +  +H SFG+ +  + + +     +    K      
Sbjct: 1   WATPDIFDPAFRDALTKLHK-GQISAPVHSSFGWHLIELLDTRK-VDKTDAAQKDRAYRM 58

Query: 375 MRITKASEKVKEDYKRLEEFLALG 398
           +   K SE   E    ++E  A  
Sbjct: 59  LMNRKFSE---EAATWMQEQRASA 79


>gi|326433499|gb|EGD79069.1| hypothetical protein PTSG_02037 [Salpingoeca sp. ATCC 50818]
          Length = 5390

 Score = 43.8 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 67/234 (28%), Gaps = 31/234 (13%)

Query: 61   KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
            +QE+  + ++    +N+  AR   +++     L+     ++  +   L+     V     
Sbjct: 4707 EQEMNRLMKQHEQQLNTLSARMD-VERNRQQELIKAKLAERKQKRKKLQEQRQEVE---- 4761

Query: 121  RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
                                L RE   +++  +       R       V  ++ +    +
Sbjct: 4762 --------------------LQREIATQRQETEALKHEQVREAEREAMVTSLQQTGKDAE 4801

Query: 181  QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                   + R    +      V A  D +   L    ++  +  R  E +   Y      
Sbjct: 4802 TVVASVLQRRHAQELQQIREQVEAEQDVALKELKATIQERHEA-RLDE-RATRYEKEMAD 4859

Query: 241  EKEKKIEIS---NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
               +   I     +E +   E+  +   S      E  +   +  A  A   LK
Sbjct: 4860 FMVESASIDPEAAEETRRYIEQAYKLDVSELESEYENELAQAE-TATNARLELK 4912


>gi|301120530|ref|XP_002907992.1| peptidyl-prolyl cis-trans isomerase, putative [Phytophthora
           infestans T30-4]
 gi|262103023|gb|EEY61075.1| peptidyl-prolyl cis-trans isomerase, putative [Phytophthora
           infestans T30-4]
          Length = 176

 Score = 43.8 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 26/103 (25%)

Query: 268 EIRTVEQLVFP-----------------NQKEADEAFQSLKK-----GKKFIQLAEEQGK 305
           E      L+                   +++EA      L+        KF +LA +   
Sbjct: 14  EQVRASHLLIKHSGSRRPASRLSDNITRSKEEAIAKLLELRALIVSGQAKFEELATQYSD 73

Query: 306 SLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
             S      LG F +  +      D+ F+L   G  + +    
Sbjct: 74  CNSGTRGGDLGPFGRG-MMQKPFEDATFALKVGGKASHLSDTR 115


>gi|160913549|ref|ZP_02076240.1| hypothetical protein EUBDOL_00025 [Eubacterium dolichum DSM 3991]
 gi|158434101|gb|EDP12390.1| hypothetical protein EUBDOL_00025 [Eubacterium dolichum DSM 3991]
          Length = 290

 Score = 43.4 bits (101), Expect = 0.100,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE-EQGKSLSDISLGSFSKEYIPDVSLADS 328
           R  ++L F ++++A +A + +K GK   +          S +     +K  +P  +  D 
Sbjct: 147 RKAQKLEFTSKEDAQKALEEIKNGKPIEEFTTVNTSSGTSQLEETYTTKSSLPTGAF-DK 205

Query: 329 IFSLAKKGDFTPVIH--GSFGYVIAHVSNIKPSF 360
           I ++ K G    VI    S  Y +  V+ + P+ 
Sbjct: 206 IKAMEKPGLIEEVIEDTTSSKYYVFKVTQVDPNK 239


>gi|186683552|ref|YP_001866748.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
 gi|186466004|gb|ACC81805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
          Length = 242

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 78/221 (35%), Gaps = 35/221 (15%)

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
           +   ++++R  ++           + +++ ++   + R V+ +             S   
Sbjct: 24  EIVEQIITRKLIIAAAEEAGI--KVEVEELQKAADQIRLVNKL------------DSADR 69

Query: 213 LTQWFEKYK---DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
             QW EK+    D++    Y  +       H    K+E         + +N+  Y     
Sbjct: 70  TWQWLEKHSLSLDDFEEIAYLNLISGKLTNHLFADKVEP-------YFIENQLDYVG--- 119

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSL----SDISLGSFSKEYIPDVS 324
             + ++V  ++  A E F ++K+G+  F  +A +  +          LG   ++ +    
Sbjct: 120 VVMYEVVLDDEDLALELFYAIKEGEMSFYDVAHKFIQDTELRRKGGYLGIVRRKDL-KPE 178

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSN-IKPSFTVSF 364
           ++ ++FS          I  S G  +  V   I+P      
Sbjct: 179 ISAAVFSAKPP-QVIKPIVTSKGIHLILVEELIQPDLNEKL 218


>gi|90423813|ref|YP_532183.1| hypothetical protein RPC_2310 [Rhodopseudomonas palustris BisB18]
 gi|90105827|gb|ABD87864.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 320

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 53/184 (28%), Gaps = 33/184 (17%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           S  V V  + +                       + +         ++++D L++     
Sbjct: 44  SVAVMVNGEPITNYDIEQR-------------SKLMALSTHKSPSRQQVIDELINEKVKI 90

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           +  +  G++     + G  A      G   + S +     L  +GI  +         + 
Sbjct: 91  REGKKFGIDPSVADIDGSFAGM----GSRMRMSAEQLTKSLEGQGIRPETLKQRMRAEMV 146

Query: 161 -RTDVVGMFVGGMRPSNLLLDQA---------KRFYFENRSVDYIVLNNRHVPAIADPSN 210
             + V G F   +      +  A         + F ++ R +  I      VP  A PS 
Sbjct: 147 WTSLVRGRFKDSLLVGEKEVRAALGGDDKSSGESFEYQMRPIVLI------VPRNAAPSA 200

Query: 211 AVLT 214
             L 
Sbjct: 201 RELR 204


>gi|258592100|emb|CBE68405.1| DSBA oxidoreductase precursor [NC10 bacterium 'Dutch sediment']
          Length = 355

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 78/280 (27%), Gaps = 46/280 (16%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           S     +    +       +   +L  +  +              L +  LD L+    L
Sbjct: 43  SKAAAKIDDYVITLDEIEKALAPQLAKLEDQ-----------KFQLLESKLDELIEKRLL 91

Query: 100 DQFIEDIGLE---------------ADHGRVWGEIARSPL-FHGKDNKFSHDVFVSRLAR 143
               +  G+                     V   I ++     G +      V    L+ 
Sbjct: 92  AVEAKRRGITVEDLLKAEVTSKIPEVSDAEVTAFITQNRARLQGDEAGLRPKV-RDYLSD 150

Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
           + + EK+    Y   L +   V  F+    P+ + +     F    +     ++      
Sbjct: 151 QKMEEKQ--RIYLAGLRQHAKVERFLEEPEPTRIAVSAEGAFAQGPKDAPITIVEFSDFQ 208

Query: 204 ----AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
               +    +   + + +         P+  R+++  F +     K   +++  +   E+
Sbjct: 209 CPYCSRVVATLKEIVRLY---------PKQVRLAFRDFPIANLHPKAAKAHEAARCAGEQ 259

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQ 298
              K++    R  E        +     + LK  GK F  
Sbjct: 260 --GKFWGYHDRLFESQAQATVADFKRFAEQLKLDGKNFAT 297


>gi|126739402|ref|ZP_01755095.1| PPIC-type PPIASE domain [Roseobacter sp. SK209-2-6]
 gi|126719502|gb|EBA16211.1| PPIC-type PPIASE domain [Roseobacter sp. SK209-2-6]
          Length = 426

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 59/176 (33%), Gaps = 19/176 (10%)

Query: 8   ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
              +  A++      + F + G + +L + S  +  ++V    +           +    
Sbjct: 19  HKFSVSARLLGAAFALTFGL-GFAPSLEAQSLFAPAITVDSAVITNYELD-----QRERF 72

Query: 68  SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
              +    +        + +K  + L+        +++ G+E D   +   +        
Sbjct: 73  MALLRTPGD--------IAEKAREELIDDRLKLAILDEFGIEVDDEEIKQGMTELAG--- 121

Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDVVGMFVGGMRPSNLLLDQA 182
                S + F+  L + GI  +   D     +S R  +   ++   RP+   +D+A
Sbjct: 122 -RANLSLEEFLGVLRQNGIAPETVRDLTRVGISWRNFLGARYLSQARPTEEEIDRA 176


>gi|332523128|ref|ZP_08399380.1| putative foldase protein PrsA [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314392|gb|EGJ27377.1| putative foldase protein PrsA [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 313

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 78/240 (32%), Gaps = 22/240 (9%)

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           T VV M    +  ++   +       +   +  I+            S+  + + + K  
Sbjct: 30  TKVVTMKGDTITVTDFYKEAKTSTAAQQSMLSLIMSRVFEQEYGKKVSDKKVEESYNKTA 89

Query: 222 DNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
             Y               E  +       + E   K E   +   A Y+K  E Y SPE 
Sbjct: 90  KQYGSSFSDALGQAGLTTETYKKQIRTTMLVEYAVKQEAKKELTDANYKKAFENY-SPE- 147

Query: 270 RTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQG-KSLSDISLGSFSKEYIPDVSLAD 327
            T + ++  ++ +A +  + +K  G  F ++A+E   +S   +     S        +  
Sbjct: 148 MTTQVIIMDDEAKAKKVLEEVKAEGADFSKIAKENTVESAKKLDFTFDSAGTNLPSDVIS 207

Query: 328 SIFSLAKKG-----DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           +   L +                  Y I ++   K      ++E KK +   +  +K ++
Sbjct: 208 AAGKLNEGAKSELITVMDPSTYQKKYYIVNMVK-KAEKKADWKEYKKRLTEIIMKSKEND 266


>gi|324499717|gb|ADY39887.1| Laminin-like protein lam-2 [Ascaris suum]
          Length = 1663

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 62/503 (12%), Positives = 147/503 (29%), Gaps = 73/503 (14%)

Query: 59   SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
               Q+L  I+Q+   + +    RS  +              +   E     A    +   
Sbjct: 1220 EQSQQLSEIAQEARKLADKHENRSREI--------------EMLAEKTK-NASRQALIEA 1264

Query: 119  IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
              +  +F G           +RL   G      ++   + L+   ++         +  L
Sbjct: 1265 --KDAIFGGDATSKEIANMQNRLKDTG----NLLNQTRQ-LAAEQLIEADKAYKAAAESL 1317

Query: 179  LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
                +     N     +    + V   A  + A   +     K+       + I+   ++
Sbjct: 1318 T-TVEGLKLPNVDPQLLKQEAKRVAEDAKMAGANAKEQAAANKE-LIDEAQRVIANAGYE 1375

Query: 239  VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
            +   + + +IS++ L                R   QL     KEA++   +L     F  
Sbjct: 1376 LQRAKDQQKISDELLAD------TDVARAAAREAVQLAENTLKEANQTLNTLN---DFQA 1426

Query: 299  LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
            L                      D S  +++  L K  +            IA   +   
Sbjct: 1427 LV---------------------DGSKEEAVEELGKLKEIEE--------RIALAEDTTR 1457

Query: 359  SFTVSFQEVKKDIANQ----MRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSI 413
                +    K D+       ++  + ++ + E    L    A    + + +      ++ 
Sbjct: 1458 EAENAIGNAKNDVEAAEQIAVQAEEEAKAISEKAHELRNQTAGTLKNAESMKTDANQLTN 1517

Query: 414  DLPLVDFAGKDVKGKEVAAIP-YKEQLLFRVFGKDDPLSKDHTVALPDG--SYMWVQIKE 470
            D+        D K +         + +      ++   + + TV+        +  Q+  
Sbjct: 1518 DITETAATLGDYKRQAGTDKARASDAVTKAALAENAAKNANKTVSEASDKIRRIIDQLNS 1577

Query: 471  SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                   +L+E+   V++  K ++ A+ +  +   L  +  ++ +       ++ A  L 
Sbjct: 1578 LDEVNSEELDELEKQVEEAEKILENAD-LEKQVEALKQQKMEQDRKISQFKNDIDALQLE 1636

Query: 531  TNQIN--RMDNENKFFGYDGISQ 551
               +   R    +K F    + Q
Sbjct: 1637 VRNLEEIRNSLPDKCFNVINLEQ 1659


>gi|164663161|ref|XP_001732702.1| hypothetical protein MGL_0477 [Malassezia globosa CBS 7966]
 gi|159106605|gb|EDP45488.1| hypothetical protein MGL_0477 [Malassezia globosa CBS 7966]
          Length = 1855

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 99/272 (36%), Gaps = 17/272 (6%)

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD-FTPVIHGSFGYVIAH--VSNI 356
           A  Q  S     +G  S  ++PDVS+  +  S++   +  T     + G + A       
Sbjct: 587 AAAQLTSTPPREVGRRSNVWMPDVSMGSTAASMSVDEERTTGPSTIAKGTLAARPPAPAE 646

Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
             +     ++V+ + A        +E ++ + +++E+  A     +    + ++    + 
Sbjct: 647 NTASAWLMEQVRAEHAR--AEQLRNEHLEAERRKMEQLKAERMRTE----QLRVEQAQVE 700

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
            +       +   V     ++  + RV  +     ++             Q+K      +
Sbjct: 701 QIRIEKAKTEQLRVEQEKAEQARIERVRAEQLKAQQEKAEQARIERARAEQLKAQQEKAE 760

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVS---SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
           +   E     ++     + AE+     ++A Q   E++K+G    +  +N   S L  + 
Sbjct: 761 QARVE-RIRAEQRRSEQEKAEQARFEQARAEQARAEHAKDGVTSAEQARNRPPSSLDKSD 819

Query: 534 INRMDNENKFFGYDG----ISQVFSGPVEMVK 561
           + RM ++      DG    +S +FS P    K
Sbjct: 820 MARMSSKRPSSREDGPGRRLSTLFSIPFAGRK 851


>gi|297671356|ref|XP_002813805.1| PREDICTED: LOW QUALITY PROTEIN: laminin subunit beta-2-like [Pongo
            abelii]
          Length = 1798

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 78/292 (26%), Gaps = 36/292 (12%)

Query: 373  NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
                   A  + +     L+  LA G S+       +  + +      A  D        
Sbjct: 1445 AAATADLALGRARHTQAELQRALAEGGSILSRVAETRRQASEAQQRAQAALDKANASRGQ 1504

Query: 433  IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE---------------SIPARDR 477
            +    Q L  +                    +  ++ E               +I  R R
Sbjct: 1505 VEQANQELRELIQSVKDFLNQEGADPDSIEMVATRVLELSIPASAEQIQHLASAIAERVR 1564

Query: 478  KLEEVLT-------DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
             L +V         DV++  + ++ A    S+A     +     +   +  +  G +   
Sbjct: 1565 SLADVDAILARTVGDVRRAEQLLQDARRARSRAEDEKQKAETVQEALEEAQRAQGVAQGA 1624

Query: 531  TNQ--INRMDNENKFFGY----DGISQVFSGPVE-------MVKCFPIENGLSYVVFKVT 577
                  +  D E   +       G  Q  S   E       +++   ++   + +     
Sbjct: 1625 IRGAVADTQDTEQTLYQVQERMAGAEQALSSAGERARQLDALLEALKLKRAGNSLAASTA 1684

Query: 578  NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY-SVTVHDNLIQRYLD 628
                G  Q + +    L +    D   +V A  + +   V       ++  D
Sbjct: 1685 EETAGSAQGRAQEAEQLLRGPLGDQYQTVKALAERKAQGVLAAQARAEQLRD 1736


>gi|134097438|ref|YP_001103099.1| hypothetical protein SACE_0833 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004572|ref|ZP_06562545.1| hypothetical protein SeryN2_08640 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910061|emb|CAM00173.1| hypothetical protein SACE_0833 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 308

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 53/200 (26%), Gaps = 24/200 (12%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM---ISQKIGFVVNS 77
           L       G+  A            VG  ++P     + + + L     +  ++      
Sbjct: 7   LLASIATAGILLAGCGTGQPGAAAIVGDTRIPVGQVQSWFTEVLNKEPGLRPQLQQQGTM 66

Query: 78  ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS--PLFHGKDNKFSHD 135
           +      L +++    V    + Q   + GL  D  RV   I +   P    +   F   
Sbjct: 67  DE-----LGRRLASFTVQQELIRQAAGEEGLRVDEQRVTAAIDQMGGPRAATQGTIF--- 118

Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
                       E    D     L   ++   +V  +  +      + R   E ++    
Sbjct: 119 -----------TEGNIRDMTRSRLLAAELARKYVDRLSVTIDYTQASTRAEAETKARRLA 167

Query: 196 VLNNRHVPAIADPSNAVLTQ 215
                    +     A L+ 
Sbjct: 168 RGPQEAAALLQADRQAGLSA 187


>gi|88809461|ref|ZP_01124969.1| hypothetical protein WH7805_09924 [Synechococcus sp. WH 7805]
 gi|88786680|gb|EAR17839.1| hypothetical protein WH7805_09924 [Synechococcus sp. WH 7805]
          Length = 254

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 61/173 (35%), Gaps = 13/173 (7%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
               L  W E++       + + +  +       +  I+  + + +  + + KE     +
Sbjct: 67  DEKELKTWLEEHA----LSKEELLEQVSLPSKLSQLAIDWFDSQAETRFLERKESL---D 119

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA- 326
             T   L   +   A E +  L+ G+  F  LA++  +     + G      +     A 
Sbjct: 120 QATYSLLRVQDSGLAHELYLQLEAGEADFESLAKQYSEGPEKNNRGKVGPASLMRAHPAL 179

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-VKKDIANQMRIT 378
            ++   AK G     I     +++  +   + +    F + +++ +A ++   
Sbjct: 180 RNVLRTAKIGVVLEPIPIEQWWIVTRLEERQEAN---FDKTMRQRMATELLQN 229


>gi|320106396|ref|YP_004181986.1| SurA domain-containing protein [Terriglobus saanensis SP1PR4]
 gi|319924917|gb|ADV81992.1| SurA domain protein [Terriglobus saanensis SP1PR4]
          Length = 240

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 45/156 (28%), Gaps = 16/156 (10%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
              S    +  V  Q +  S      +            +          L ++ +  L+
Sbjct: 35  RGESVDRIIAIVNGQIILQSDLDEEVR---------FAKLQPYRLGAGKTLREQAMSRLI 85

Query: 95  SGATLDQFIEDIGLE-ADHGRVWGEI----ARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
               + Q  + +G        +   I       P       +   + ++  LA  G   +
Sbjct: 86  DRTLILQQQQGMGQAPITDAELDAAITDLRKDLPACAHAACETD-EGWIKFLAGVGFTPE 144

Query: 150 EYIDHYTKML-SRTDVVGMFVGGMRPSNLLLDQAKR 184
           E  + +   L     +   F  G+R S+  +++  +
Sbjct: 145 EVRERWRIRLEVLRFIEQRFRAGIRISDAQIEEFYK 180


>gi|159043736|ref|YP_001532530.1| SurA domain-containing protein [Dinoroseobacter shibae DFL 12]
 gi|157911496|gb|ABV92929.1| SurA domain protein [Dinoroseobacter shibae DFL 12]
          Length = 398

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 61/214 (28%), Gaps = 24/214 (11%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           V++V  + +           +       +    +  R           + L+      Q 
Sbjct: 29  VITVNNEGISGYELE-----QREKFVTALRLPGDPARL--------AREGLIEDKLKLQA 75

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-R 161
               GLE     +         F  + N  + + F++ LA EG+  + + D     L  R
Sbjct: 76  ARAAGLEIGIDELE---LGLEEFASRAN-LTTEQFIAALADEGVAPETFRDFVRADLVWR 131

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFE-----NRSVDYIVLNNRHVPAIADPSNAVLTQW 216
             +   F    R S+  +++A            R  + I+         A+   A + + 
Sbjct: 132 ELIRQRFGPRARVSDAEVERALALQGAASGARIRVAEIIIPTPPDRRVEAETLAANIRER 191

Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
            +     +     +  +            I +S 
Sbjct: 192 VQT-TAQFSEAAQRFSAASSRANGGLRDWIAVSE 224


>gi|148657502|ref|YP_001277707.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus sp.
           RS-1]
 gi|148569612|gb|ABQ91757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus sp.
           RS-1]
          Length = 520

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 48/399 (12%), Positives = 104/399 (26%), Gaps = 73/399 (18%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQK------IGFVVNSERARS-VGLDKK---- 88
              V  VG   +    ++   + E   +  +       G     +       +D +    
Sbjct: 67  GRPVAQVGSVVLTRGDYVAERRGEAARLIAQSLYLATFGPQFAQQFLDQIPQIDAQAAAA 126

Query: 89  ----ILDNLVSG----ATLDQFIE-DIGLEADHGRVWGEIARS--PLFHGKDNKFSHDVF 137
               + D LV+       + Q  +   G++   G +  E      P F    +  +    
Sbjct: 127 RNEPVDDALVNQWVELQLIRQGAQSRFGIQVTDGEIAQEFIDLFGPNFAPPADAVTPT-- 184

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
            + L     +                 VG       PS            E         
Sbjct: 185 -AVL--LPTSPPT--------APPEPTVGPGTPSPTPSGPTATPTPSPTPEPTVTPSPTP 233

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRA-PEYKRISYILFDVHEKEKKIEISNDELQAE 256
                 A        L + +++Y +  R     +RI   L D         +     +  
Sbjct: 234 LADEALARQQ---TALQRLYDEYVNEMRRVDPQRRIHLTLDDFRRGLSNQFLRQALTRRV 290

Query: 257 YEKNKEKYF-----SPEIRTVEQLVF-------PNQKEADEAFQSLKKGK---------- 294
            E+            P       ++          ++E ++AF + +             
Sbjct: 291 QEQLVPDSTFTPSADPSAIETRHILLKVTVPITATEEEREQAFAARRAEAEALLAEARAA 350

Query: 295 -KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD---------SIFSLAKKGDFTPVIHG 344
             F +LA E+ +  +  + G     +  D    D         +  + A + +    +  
Sbjct: 351 ADFGELARERSEDYNTRAAGGALPSFDKDGKTPDGTQIDPALVAAIANASENEIVGPVRT 410

Query: 345 SFGYVIAHVSNIK-PSFTVSFQEVKKDIANQ-MRITKAS 381
           SFG+ I  +      S        + +   + +   +A+
Sbjct: 411 SFGWHIVQLVRRTVDSRETQLNRARAEAFERWLEEQRAA 449


>gi|332703851|ref|ZP_08423939.1| hypothetical protein Desaf_2729 [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554000|gb|EGJ51044.1| hypothetical protein Desaf_2729 [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 374

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 51/158 (32%), Gaps = 4/158 (2%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
             RIS   F        I+I   E  + Y  +   ++ P       +  P+++   +A Q
Sbjct: 133 KARISIEKFLQQVLRPSIKIDYTEADSYYRSHLSDFYLPSRLKFLIITGPSRELVLKATQ 192

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
              KG+    +A +    L ++ +           +   +  +  + G+ + V+     +
Sbjct: 193 LFSKGEAAADIAAK----LKEVEVRQLRMREDRLPASWLNALANLEPGEASSVLTEESKF 248

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
               +    P+  +   +    +   +   K  +    
Sbjct: 249 HRLILVERSPAKVLDPTQAYPLVEQVLLDQKMRDAFNA 286


>gi|320546403|ref|ZP_08040718.1| peptidyl-prolyl cis-trans isomerase [Streptococcus equinus ATCC
           9812]
 gi|320448788|gb|EFW89516.1| peptidyl-prolyl cis-trans isomerase [Streptococcus equinus ATCC
           9812]
          Length = 353

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 67/213 (31%), Gaps = 23/213 (10%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +V M    +  S+           +   ++ I+         +  S+  +T+ + K   +
Sbjct: 48  LVTMKGNTITVSDFYSAAKSSTSSQQTMLNLILARVFEDQYGSKVSDKEVTEAYNKTASS 107

Query: 224 YRAPEYKRISYILFDVHEKEKKIEIS------------NDELQAEYEKNKEKYFSPEIRT 271
           Y +     +          +++I  S            +      Y++  + Y      T
Sbjct: 108 YGSSFSSALQAAGLTTDTYKQQIRTSMLVEYAVKEAAKDKLTTKNYKEAYKDYNPDTTAT 167

Query: 272 VEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
           V  +   ++ +A+         G  F ++A+E   +         S +      + D+ F
Sbjct: 168 V--IALSDEDKANSVHDQATADGADFDKIAKEN-TTAKKTEYTFDSADTKLPTDVMDAAF 224

Query: 331 SLAKKGDFTPVIHG------SFGYVIAHVSNIK 357
              ++G  + VI        S+ Y I   +   
Sbjct: 225 K-QEEGSVSDVIKVMNSSTYSYTYYIVKTTKKT 256


>gi|153807136|ref|ZP_01959804.1| hypothetical protein BACCAC_01413 [Bacteroides caccae ATCC 43185]
 gi|149130256|gb|EDM21466.1| hypothetical protein BACCAC_01413 [Bacteroides caccae ATCC 43185]
          Length = 330

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 60/188 (31%), Gaps = 24/188 (12%)

Query: 14  AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
            K+  ++  + F    +S  + +V+    V  V  +K+  S   +  KQE+  +      
Sbjct: 1   MKVASLLFLITFF---ISCNISNVNKDEIVAEVNGEKIYLSELSSQSKQEIFDL------ 51

Query: 74  VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
                   +  +  ++L NL+    L+   ++  +          + +  L   +D   S
Sbjct: 52  -----LNTAYEIKNRVLTNLIKQKLLENTAKNKNM--SLEEFLDFLVQQKLLLDQD---S 101

Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
              + +        E  Y  +    L +  +        R  N ++       ++   + 
Sbjct: 102 IKKYYAI-----NTESFYAKNSLIPLKKGTIEEELSFQQRLRNRIVQALVDSLYQKADIK 156

Query: 194 YIVLNNRH 201
             +   + 
Sbjct: 157 RYIYPPKQ 164


>gi|125559665|gb|EAZ05201.1| hypothetical protein OsI_27400 [Oryza sativa Indica Group]
          Length = 302

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 9/93 (9%)

Query: 272 VEQLVFPNQKE---ADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
           V+ L+   Q      D     +  G     LA E     S      LG   +  +     
Sbjct: 98  VQHLLVGEQDVRLLVDLEKNIITGGADLSDLAVEYSLCPSKENGGMLGWVRRGQMV-PEF 156

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
            ++ F               FG+ +  V   + 
Sbjct: 157 EEAAFGAPLNKVVR--CKTKFGWHLLQVLAERE 187


>gi|323341666|ref|ZP_08081899.1| hypothetical protein HMPREF0357_10079 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464091|gb|EFY09284.1| hypothetical protein HMPREF0357_10079 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 291

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLA 326
           R    L   NQ++ADEA + +K G+ F  +A++    G      +     K       +A
Sbjct: 140 RKARILQLENQEKADEALEKIKAGENFDDIAKDYKVTGSPYDGSAKVHLLKSVQYPQEVA 199

Query: 327 DSIFSLAKK---GDFTPVIHGSFGYVIAHVSNIKPSF 360
           D++ +  +    G  +     S    I  +  I  S 
Sbjct: 200 DALKNATEPTLSGVLSDASDDSK--YIVQIIEIDASR 234


>gi|225848231|ref|YP_002728394.1| SurA N- domain family [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644703|gb|ACN99753.1| SurA N- domain family [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 285

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 6/184 (3%)

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
           DK+  + ++    L Q    +G+      V   +         +N    + F   L + G
Sbjct: 58  DKQAQEKIIDSILLSQQARKLGISVSPKEVDNALLSIA---KANNIQDLETFKKELEKNG 114

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           I+  +  +  T+ L     +  ++       ++    +    +   + YI  +     ++
Sbjct: 115 ISYTKLKEFITRDLVSNKFLHFYLRDYITKGIVEGSVEDV--KKIRMIYISKDRPDYESV 172

Query: 206 ADPSNAVL-TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
                  L    F +Y   Y   ++   +  L    +K    E  + E+ +  E +  + 
Sbjct: 173 VKLLKEKLNKNNFSEYAAKYSDDKFTAENAGLLGEVKKGDLAEELDKEVFSRKEGDIFQV 232

Query: 265 FSPE 268
            + E
Sbjct: 233 DTKE 236


>gi|254445985|ref|ZP_05059461.1| hypothetical protein VDG1235_4233 [Verrucomicrobiae bacterium
           DG1235]
 gi|198260293|gb|EDY84601.1| hypothetical protein VDG1235_4233 [Verrucomicrobiae bacterium
           DG1235]
          Length = 539

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 74/198 (37%), Gaps = 11/198 (5%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
           Y+V     + A +   +      F + + N+   +   +    ++      K+ +   ++
Sbjct: 325 YVVSELDFIEAKSQKVDYEPQ--FIQNRINFTNAQILDV----YEREHLFPKVIVEPAQV 378

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
            A Y+KN+ ++          LVF     A+ A       K+   +A E+  +   + +G
Sbjct: 379 TAFYKKNRSRFTLVSKCQGRLLVFDKALSAEWAADMQTSTKEARAIAVEE-ITNYVVEIG 437

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
                + P       I   AK+GD    I     +++        S  +  ++V  +I++
Sbjct: 438 KTIDAFNPLEP----ILLNAKEGDRIGPIPDHGRFLVFAKEENVESQVIPLKQVSDEISD 493

Query: 374 QMRITKASEKVKEDYKRL 391
           ++R  +   +  +  K L
Sbjct: 494 ELRRNEVERRSIQLGKSL 511


>gi|315635433|ref|ZP_07890699.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315480191|gb|EFU70858.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 274

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 88/242 (36%), Gaps = 23/242 (9%)

Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN------- 210
            + RT VV         S L+         +  ++   +            SN       
Sbjct: 36  DIERTMVVNKIPKNEAVSYLIDKILYDQLVQEYNITADIFEVNDYIEKLANSNGMDIYAF 95

Query: 211 -AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI-SNDELQAEYEKNKEKYFSPE 268
            A++ Q +  Y   +       +          + ++ I +++++Q  YEKN+ KY + +
Sbjct: 96  KAIVKQEYPDY-SVFENEAKNTVIRQKLVQKLVKGQLAIATDEDMQLYYEKNRNKYLTAK 154

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
              V Q    +++               +++A+      S++   S         +    
Sbjct: 155 TFDVTQYSSTSKEA-------------LMEVAKNPIIIPSEVQRTSLKLNTEDIQAQLQY 201

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
           + +  K   FTP+   +  YV   ++  + +  +S++ VK  I N + + +  + +K+ +
Sbjct: 202 LLNGTKVNSFTPIFTANKQYVTFFITKKEGTAPLSYESVKARIFNDIMMNREQKYLKDYF 261

Query: 389 KR 390
           ++
Sbjct: 262 EK 263


>gi|118387307|ref|XP_001026765.1| PPIC-type PPIASE domain containing protein [Tetrahymena
           thermophila]
 gi|89308532|gb|EAS06520.1| PPIC-type PPIASE domain containing protein [Tetrahymena thermophila
           SB210]
          Length = 118

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKK----FIQLAEEQG---KSLSDISLGSFSKEYIPDV 323
            V + +   +K      + + K       F+++A++      + +   LG F    + + 
Sbjct: 29  QVTRTLDEAKKNVAAFREQIMKSADPQKTFMEIAQKYSECTSARNGGDLGEFGPGQMQE- 87

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           S   + ++L K G+ + ++    G  I 
Sbjct: 88  SFEQAAYAL-KVGEISNLVESDSGVHII 114


>gi|302825428|ref|XP_002994330.1| hypothetical protein SELMODRAFT_432257 [Selaginella moellendorffii]
 gi|300137775|gb|EFJ04602.1| hypothetical protein SELMODRAFT_432257 [Selaginella moellendorffii]
          Length = 375

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 15/97 (15%)

Query: 109 EADHGRVWGEIARSPLFHGKDNKFS--HDVFVS----------RLAREGINEKEYIDHYT 156
                 +   I R P FH    +      +F             L + G++E +Y D + 
Sbjct: 46  STSDEEMLDAIVRHPEFHWAGGEIFLRRVLFNQAMPHWQDWESLLLKLGLSEAQYEDVFY 105

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
               +  +  +    +     +L+    ++ E R + 
Sbjct: 106 DNTIQQLLAEV---SINVPPSILESTIAWFIEKRDLQ 139


>gi|222824289|ref|YP_002575863.1| hypothetical protein Cla_1294 [Campylobacter lari RM2100]
 gi|222539510|gb|ACM64611.1| conserved hypothetical protein [Campylobacter lari RM2100]
          Length = 275

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/207 (10%), Positives = 59/207 (28%), Gaps = 58/207 (28%)

Query: 20  VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
           ++   F     ++ L++ +     + V  Q +       + K+                 
Sbjct: 5   LISCCFA----ANVLYAQTLGGVAMIVENQPITLYDIEQTMKEL---------------- 44

Query: 80  ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
                  +K +  LV         + +G+      +  ++ +      KDNK   +   +
Sbjct: 45  --KTNDKQKAIAFLVDDKIQQSEAKKLGIYVSTFELNEKLDQI----AKDNKTDINGLQA 98

Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
           R+ ++G++ + + +   K L R  +    +                              
Sbjct: 99  RMEKDGLSFEVFKNKVRKNLEREKLYRSIMQN---------------------------- 130

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRA 226
               A  +  +  L  ++E   D +  
Sbjct: 131 ----AKINIDDETLKHFYESNLDKFST 153



 Score = 40.4 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 62/149 (41%), Gaps = 15/149 (10%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-VFPNQKEADEAFQSLKKGKKFIQLAEE 302
            KI I ++ L+  YE N +K+ +        + +        E  Q L +   +   ++ 
Sbjct: 131 AKINIDDETLKHFYESNLDKFST-----FSNIDLVVYNSTNPELLQQLAQNPMYKN-SQI 184

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           + K++S ++  S     +       ++ +  K G+FTPV++G   Y++  V        +
Sbjct: 185 KSKAIS-LNAASIDPRLL-------ALLNNTKIGEFTPVLNGENAYIVYFVKEKYGKNPI 236

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRL 391
            F  +K  I N   I +  + +K    ++
Sbjct: 237 EFDLIKDQITNAYTINQKEQALKNHLDKI 265


>gi|254712136|ref|ZP_05173947.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella ceti
           M644/93/1]
 gi|261319794|ref|ZP_05958991.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti M644/93/1]
 gi|261292484|gb|EEX95980.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti M644/93/1]
          Length = 226

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 12/102 (11%)

Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285
           E    + +   +  +      S DE Q  YE N+ ++ S  I     ++        E  
Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174

Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
                     A   + +   F  +A E     S    G+  +
Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQ 216


>gi|317057591|ref|YP_004106058.1| hypothetical protein Rumal_2958 [Ruminococcus albus 7]
 gi|315449860|gb|ADU23424.1| hypothetical protein Rumal_2958 [Ruminococcus albus 7]
          Length = 410

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 94/318 (29%), Gaps = 51/318 (16%)

Query: 48  RQKVPFSSFINSWKQELGMISQKIGFVVNSERARS-VGLDKKILDNLV----SGATLDQF 102
              V F  F   +   L    Q   F ++    +S     +K LD ++    +    D+ 
Sbjct: 78  GIDVTFDEFRFYYFTNLAQYKQ---FGIDENDLKSNPETYQKFLDYVISAIKNELVTDKL 134

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
             D  +          I  +     K +  + + F   L R  +      D   KM  R 
Sbjct: 135 AADNEI-VLDEEDQQVIDGNVN-KCKADYGNEEEFQKELKRSYLT----YDVLQKMFVRA 188

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
                 +  +  +                  Y       +  + DP      Q+   ++ 
Sbjct: 189 QTYNKVMDTLFKNG---------------GKYATTEEDFLKLVQDP-----EQY--AHEV 226

Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
           +   P Y ++             + +S    +   + +       E +T        +  
Sbjct: 227 HIMIPFYSQVDLDDSTAATF-DDMTLSQ---KVNAKNSAYNALDAEAKTAAN--EKAKAV 280

Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLS---DISLG-SFSKEYIPDVSLA--DSIFSLAKKG 336
           A+E  +  + G+ F +L EE         D   G    ++   D      +  FSL K G
Sbjct: 281 AEEVLKLAQDGEDFTKLVEEYNWDSGMEEDPKRGYYMKRDNTGDFPKELLEEAFSL-KPG 339

Query: 337 DFTP--VIHGSFGYVIAH 352
             +   V + ++GY I  
Sbjct: 340 QISDKVVENPTYGYFIIK 357


>gi|169621117|ref|XP_001803969.1| hypothetical protein SNOG_13763 [Phaeosphaeria nodorum SN15]
 gi|160704180|gb|EAT78787.2| hypothetical protein SNOG_13763 [Phaeosphaeria nodorum SN15]
          Length = 395

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 20/95 (21%)

Query: 276 VFPNQKEADEAFQSLK---------------KGKKFIQLA---EEQGKSLSDISLGSFSK 317
           +  ++ EA+E  +  +                 K   +LA    +   +     LG F  
Sbjct: 302 ITRSKSEAEELIKKYQSQILAFEAPAEHNDPNPKSLSELATTESDCSSARKGGDLGFFGH 361

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +      ++ F L K G  + ++  + G  +  
Sbjct: 362 GDM-QKEFENAAFDL-KPGGVSEIVDTASGLHLIQ 394


>gi|154496043|ref|ZP_02034739.1| hypothetical protein BACCAP_00327 [Bacteroides capillosus ATCC
           29799]
 gi|150274598|gb|EDN01662.1| hypothetical protein BACCAP_00327 [Bacteroides capillosus ATCC
           29799]
          Length = 426

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 95/343 (27%), Gaps = 88/343 (25%)

Query: 30  LSDALFSVSGSSTVVSVGRQKVPFSSFINSW---KQELGMISQKIGFVVNSERARSVGLD 86
           ++ AL    G++TV++V   +V    ++       + +G         ++ E     G  
Sbjct: 63  VTMALLGFPGTTTVMTVDGAEVSAEEYLYWLGYATEYVGYYQFGDPAAIDWEMDTGSG-- 120

Query: 87  KKILDNLVSGA--------TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
             + + L++ A         +     +  +            +             D F 
Sbjct: 121 -TVTEYLINNARDLAAFNQVIRNQCAERNITLTDEEKAELDQQLADAVETSGG--QDAFE 177

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
             L      E      Y    +   +       + P+                       
Sbjct: 178 LALKEVNRTEDGLRSMYE---ASNFLYASLQNQLFPAK---------------------- 212

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
                  A  +   L QW              ++ +ILF   +      +S++E +A   
Sbjct: 213 -----DAASLTAEELAQWAADNG-------KMQVKHILFKTVDDSGNA-LSDEEKEA--- 256

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK----FIQLAEEQGKSL--SDISL 312
                                +++A++    L+        F QL  E  +    SD +L
Sbjct: 257 --------------------AKQKAEDTLAQLQASDDMENLFDQLMNELSEDGRYSDGTL 296

Query: 313 G----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           G        E        D+  +L +  + + ++  S+GY I 
Sbjct: 297 GAPDGYLFGEGEMVQEFEDAAKALGEH-ELSGIVETSYGYHIL 338


>gi|325264446|ref|ZP_08131176.1| purple acid phosphatase/fibronectin domain protein [Clostridium sp.
            D5]
 gi|324030108|gb|EGB91393.1| purple acid phosphatase/fibronectin domain protein [Clostridium sp.
            D5]
          Length = 1277

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 58/437 (13%), Positives = 135/437 (30%), Gaps = 32/437 (7%)

Query: 138  VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
             +      I+ +E  +   + ++R  ++      M  ++           +  +     L
Sbjct: 758  EAIFRAISISNEELANCTEESIAR--LMAALQKAMEVTSTTGQDEIDAVTKELNDAIDGL 815

Query: 198  NNRHVPAIADPSNAVLTQWFEKYK----DNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
              +      +     L + +E  K    + Y    Y+ +        E         + +
Sbjct: 816  EKKQ--EKPEVDKTQLEELYETVKGITGEGYTTESYEALDIARTKAWEIINSDTADQEAV 873

Query: 254  QAEY---EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
            +A Y   +  K+   + EI+   +LV     EAD    S +  + F    EE    L D 
Sbjct: 874  EAAYAELQTAKDALQAAEIQKYMELVLQAAAEADTTNASKEALEAFHTAEEELRSLLEDS 933

Query: 311  SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY-------VIAHVSNIKPSFTVS 363
            ++ +  K        A +I +L   G   P    + G         + + S    S    
Sbjct: 934  TVKTNVKA-------AKAIGTLRAMGGLNPDTVNAEGLKLAVQAAEVLNQSAYTESSWAG 986

Query: 364  FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI-SRREKIVSIDLPLVDFAG 422
            F+  + +    +   +A+++     + +E  ++      E  + +       L       
Sbjct: 987  FETARLEAEALLNELEAAQE-----ENMEPGISEQADNPETEAEKVDAAIHKLETSAMEL 1041

Query: 423  KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
             +   + +  +         V  K++  + D    L +       + ++    +  + +V
Sbjct: 1042 TEKSAELLTKLNESIAKADAVLAKEESYTPDSLKGLQEARDAAKALADAGADDEENISQV 1101

Query: 483  LTDVKKDWKTVKTAEEVSSKANQL-VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
            L+ +      VK   + +     L      KE +  +D  K    ++   N +N   N +
Sbjct: 1102 LSTLDTLLSQVKERADKTKLVMALSKASLVKEAEYTKDSLKAFKEAVENANALNEDPNVS 1161

Query: 542  KFFGYDGISQVFSGPVE 558
                 D         + 
Sbjct: 1162 DQAAVDQAVNALEAAMG 1178


>gi|259419301|ref|ZP_05743218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Silicibacter sp.
           TrichCH4B]
 gi|259345523|gb|EEW57377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Silicibacter sp.
           TrichCH4B]
          Length = 425

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           S V++V    +          Q+       +G V            +   ++L+      
Sbjct: 47  SPVITVNEDVITTYEL-----QQRARFLTVLGSVQGDPL-------ETARNDLIEDRLKR 94

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q + ++GL      +   +        +    S + F+S L + G++ +   D  +  L 
Sbjct: 95  QVMREVGLTLSEDEITEGMREL----AQRANLSLEEFLSGLRQAGVDPETVRDFTSAGLG 150

Query: 161 -RTDVVGMFVGGMRPSNLLLDQA 182
            R  + G F+   RPS   +D+A
Sbjct: 151 WREYIRGRFLAQARPSEAEIDRA 173


>gi|115474191|ref|NP_001060694.1| Os07g0687500 [Oryza sativa Japonica Group]
 gi|50509156|dbj|BAD30296.1| peptidyl-prolyl cis-trans isomerase-like protein [Oryza sativa
           Japonica Group]
 gi|113612230|dbj|BAF22608.1| Os07g0687500 [Oryza sativa Japonica Group]
          Length = 302

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 9/93 (9%)

Query: 272 VEQLVFPNQKE---ADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
           V+ L+   Q      D     +  G     LA E     S      LG   +  +     
Sbjct: 98  VQHLLVGEQDVRLLVDLEKNIITGGADLSDLAVEYSLCPSKENGGMLGWVRRGQMV-PEF 156

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
            ++ F               FG+ +  V   + 
Sbjct: 157 EEAAFGAPLNKVVR--CKTKFGWHLLQVLAERE 187


>gi|113461201|ref|YP_719270.1| large adhesin [Haemophilus somnus 129PT]
 gi|112823244|gb|ABI25333.1| conserved hypothetical protein [Haemophilus somnus 129PT]
          Length = 2906

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 78/260 (30%), Gaps = 18/260 (6%)

Query: 250  NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
              E         +       R  E      Q  A +A  +  K ++F   AE+       
Sbjct: 1872 EAEAARYEAVMAKDDAVAAKRGAEAAQTAAQGSASQAEAAKTKAEEFATKAEQAKGEAEA 1931

Query: 310  ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
              LG+   + +   +   ++ +  K          + G         + +   +    + 
Sbjct: 1932 AKLGAEQAQTVAVDAKNKALEAQGKAEQAQNKAEEAQG-------KAEAAKDEAVAAQQG 1984

Query: 370  DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
             +  + +   A +   +   + E+  +   +    +   K  ++       + ++     
Sbjct: 1985 AVTAKNQAETARDGAVDAKNKAEQAKSQAETFATQANAAKQDAVTAKNQAESARN----- 2039

Query: 430  VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
              A   K   L    G ++  ++  T A    +      + ++ A+D+  E+   D    
Sbjct: 2040 -EANAAKTAALDAKQGAENAKNQAETFATQANTA----KQGALEAKDKA-EQAKADAVAA 2093

Query: 490  WKTVKTAEEVSSKANQLVLE 509
                  A+ ++  A    LE
Sbjct: 2094 KLGADAAQTLAVNAKDKALE 2113


>gi|221215713|ref|ZP_03588674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD1]
 gi|221164415|gb|EED96900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD1]
          Length = 134

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 14/120 (11%)

Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLAD 327
           +   A      LK GK F  LA +   + S  S G              K     V++A 
Sbjct: 3   DAATAATVLSELKAGKSFESLARQYSIAPSRDSGGELPWVSFKTPATEGKTGGLPVAVAQ 62

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ---MRITKASEKV 384
           ++  L         I      VI  +   + +   SF + +  I  Q   + + KAS + 
Sbjct: 63  ALEKLPVGAVTVDSIPADALRVIVKLDAKRTTQVPSFNQAQATIRRQLETLALEKASAQF 122


>gi|331092593|ref|ZP_08341412.1| hypothetical protein HMPREF9477_02055 [Lachnospiraceae bacterium
            2_1_46FAA]
 gi|330400604|gb|EGG80218.1| hypothetical protein HMPREF9477_02055 [Lachnospiraceae bacterium
            2_1_46FAA]
          Length = 2347

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 78/247 (31%), Gaps = 42/247 (17%)

Query: 191  SVDYIVLNNRHVPAIADPSNAVLTQWFE--------------------------KYKDNY 224
             +   +   + V     P+   +   ++                          + KD+Y
Sbjct: 2032 EMQTALNAAKEVLKKDAPTKEEVQNAYDTLKDAKDKLVYIKDLKDAVANTKDVVENKDSY 2091

Query: 225  RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
                Y+     L    E  +  + +  E+       K      + + VE+      K+A 
Sbjct: 2092 TKKSYEAFGKALNKAKEVLENQDATQKEV----NDAKVALLDAQNKLVEKADVTALKDAI 2147

Query: 285  EAFQSLKKGKKF--------IQLAEEQGKSLSDISLGSFSKEYIPDVSLA--DSIFSLAK 334
            E  +++K+             + A E      +    S ++E I   + A  D+I S  K
Sbjct: 2148 EKAETIKEDVTPSSWDRVQAAKKAAEDVLKAFEKDDESVTQEQIDSAAKALNDAIDSAQK 2207

Query: 335  KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
            + DF+ +           +         + +E  K+    ++  +A++K  E    L + 
Sbjct: 2208 RADFSKLQEAVNRIEKLDLDGYTKDSVKTLKEALKEAKAVLKNEEATQK--EVEDALTKL 2265

Query: 395  LALGTSM 401
            LA    +
Sbjct: 2266 LAAEAGL 2272


>gi|221195613|ref|ZP_03568667.1| ABC transporter, permease protein [Atopobium rimae ATCC 49626]
 gi|221184379|gb|EEE16772.1| ABC transporter, permease protein [Atopobium rimae ATCC 49626]
          Length = 1138

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 85/317 (26%), Gaps = 35/317 (11%)

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
             +   A  S       +E  K    A +    +    +  +       S   L      
Sbjct: 273 SDLREKAQKSVDEARANYE--KARLEATQKLGDARSQLEDAQARIDAGESELSLGRRNHT 330

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ---GKS-LSDISLGSF 315
           +       E   V++ +   + E D A + + KGK  +   E Q   GK+ L+       
Sbjct: 331 DGTSRLESEKARVQRQLAAVRGELDAAAEKISKGKDLLASGEAQYAAGKARLAQGQADFD 390

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           +       + + ++ SLA +G                          + ++ K  +    
Sbjct: 391 TGLATFRAAKSQALASLADQG----------------------ITAATLEDAKTQLEAAG 428

Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
             T A + +     +LE   A    +D+          +L     +  + + +  A    
Sbjct: 429 YPTDAIDALLATQAKLESAKAE---LDQEQAELTKAREELDARAQSLDEAQKQLAAGERD 485

Query: 436 KEQLLFR---VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
            +  L      F             L  G       +       +  E+    V+     
Sbjct: 486 YQAALTASDEQFAVAQQKLDSALEQLKRGQTTLDNARRDYAEGQKSYEDSKVAVEAQLAD 545

Query: 493 VKTA-EEVSSKANQLVL 508
            +    E   + + L  
Sbjct: 546 AEAQINEAQKQVDDLAA 562


>gi|225870097|ref|YP_002746044.1| foldase protein PrsA precursor [Streptococcus equi subsp. equi
           4047]
 gi|254783412|sp|C0M9L5|PRSA_STRE4 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|225699501|emb|CAW93050.1| foldase protein PrsA precursor [Streptococcus equi subsp. equi
           4047]
          Length = 333

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 14/161 (8%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
             R + ++    ++  K E+++ + +  YE    +  +            N++ A     
Sbjct: 113 QIRSAMLVEYAVKEAAKKELTDADYKKAYESYTPEMTTQVT------TLDNEETAKAVLG 166

Query: 289 SLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT------PV 341
            +K  G  F  +A+E+  +        F        +      S  K+GD +        
Sbjct: 167 EVKAEGADFAAIAKEKTTAADKKVDYKFDSGDTKLPADVIKAASGLKEGDISEVVSVLDP 226

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 + I  V+  K      +++ KK +   +   K   
Sbjct: 227 ATYQNKFYIVKVTK-KAEKASDWKKYKKRLKEIVLAEKTQN 266


>gi|118474339|ref|YP_892696.1| putative periplasmic protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413565|gb|ABK81985.1| putative periplasmic protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 275

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 94/255 (36%), Gaps = 29/255 (11%)

Query: 138 VSRLAREGINEKEYID-HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
              + +  I+  + +     + L    +  +   G+   N   D+      +   +D   
Sbjct: 38  QQVMTKMNISPNDALSVLIRERLEDAQIRTL---GISADNYEADEKIAALAQANGIDVTT 94

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
             N          +         +K++ +    K   Y     +       I+ +  +  
Sbjct: 95  FKNVIESRGISSED---------FKNDIKTGIKKEKLYARILNNP---SQNITPENARRF 142

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
           YE N + +   E  +V + +  N++  +E  ++         ++ + G S+ ++ L   S
Sbjct: 143 YEANPKMFVQFEKISVTKYLTNNRQSLNEISKN--------PMSVQPGVSIENVVL--ES 192

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           KE  P +     I    KKG FTP+   + G+ I +V + + S+   F  ++K++   M 
Sbjct: 193 KELNPQLRY---ILLNTKKGSFTPIFQTADGFEIFYVYSKEGSYLPDFNSIEKEVVAAMA 249

Query: 377 ITKASEKVKEDYKRL 391
             +    V + + +L
Sbjct: 250 SQEQEIAVADYFNKL 264


>gi|228904075|ref|ZP_04068170.1| S-layer y domain protein [Bacillus thuringiensis IBL 4222]
 gi|228855160|gb|EEM99724.1| S-layer y domain protein [Bacillus thuringiensis IBL 4222]
          Length = 876

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 119/355 (33%), Gaps = 28/355 (7%)

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF-DVHEKEKKIEISNDEL 253
           +   +  +  + + +   +    E+ ++  ++ E  +   +   D  ++++K+    D+L
Sbjct: 20  LTFPSSSLAEVGNQATKKIEMVQEQNQETVKSGEVTQKDLLKLQDYLKQQEKLFADEDKL 79

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
           +   ++NKEK  + E + +E      Q + D+  + ++    F +  +   +++      
Sbjct: 80  KE--QQNKEKDITVENKELENKFVELQTKQDKLAKEIQ---TFKESIKYPSETVGVEKKD 134

Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
               E   D            K     V              +K        E+K     
Sbjct: 135 ENKVETEQDAEKEYVKKREDNKKAVKEVQDK------LQELKVKEEQQKKEAELKAKQEA 188

Query: 374 QMR-ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
           +++   +A  K KE+     +  A   + +E   + K  + D   +D   K  +  E+  
Sbjct: 189 ELKAKQEAELKAKEESDSKAKVEAETKAKEEADAKVKKEAEDKAKLDAETKAKQEAELKE 248

Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
              KE+    V  +     +             +++KE    +D    E       + K 
Sbjct: 249 KQDKEEKAK-VEAETKAKQESE-----------LKVKEEQEKKD---AETKAKADAELKA 293

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
            + +E  + +  +L  +   E K      +   +       I R+  E  F  Y+
Sbjct: 294 KEESELKAKQEAELKAKEEAELKAKSVAPQLASSQASDRPVIKRIKMEKNFLTYE 348


>gi|293690|gb|AAA39407.1| laminin B1 [Mus musculus]
          Length = 1834

 Score = 43.1 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 69/575 (12%), Positives = 163/575 (28%), Gaps = 110/575 (19%)

Query: 113  GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS--RTDVVGMFVG 170
              +   +A+SP                 L   GI  +E  +  TK ++     V      
Sbjct: 1276 NEIKDILAQSPA-------------AEPLKNIGILFEE-AEKLTKDVTEKMAQVEVKLTD 1321

Query: 171  GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNYR 225
                SN    +      E  S+D  V            S+       +T++F+       
Sbjct: 1322 TASQSNSTAGELGALQAEAESLDKTVKELAEQLEFIKNSDIQGALDSITKYFQM-----S 1376

Query: 226  APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
                KR++    D +   ++  ++ D ++    + +  +   +      L        DE
Sbjct: 1377 LEAEKRVNASTTDPNSTVEQSALTRDRVEDLMLERESPFKEQQEEQARLL--------DE 1428

Query: 286  AFQSLKKGKKFIQLAE-----EQGKSLSDISLGS-------------------------- 314
                L+        A+       G   S+   G                           
Sbjct: 1429 LAGKLQS-LDLSAAAQMTCGTPPGADCSESECGGPNCRTDEGEKKCGGPGCGGLVTVAHS 1487

Query: 315  -FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
             + K    D    D + +LA+    + ++  +       V   +         +K +   
Sbjct: 1488 AWQKAMDFD---RDVLSALAEVEQLSKMVSEA------KVRADEAKQNAQDVLLKTNATK 1538

Query: 374  QMRITKASEKVKEDYKRLEEFL----ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
            + ++ K++E ++   K++  FL    A   S++ ++                      +E
Sbjct: 1539 E-KVDKSNEDLRNLIKQIRNFLTEDSADLDSIEAVANEVLKSGNASTPQQLQNLTEDIRE 1597

Query: 430  VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
                  + +++ +    D   ++   + L +         +     D     V   +++ 
Sbjct: 1598 RVETLSQVEVILQQSAADIARAE---LLLEEAKRASKSATDVKVTADM----VKEALEEA 1650

Query: 490  WKTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
             K    AE+   +A++           +  E +   +   +  + +        ++ R  
Sbjct: 1651 EKAQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKA 1710

Query: 539  NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLT 595
             +N          V+S            +G     +K   S +          +  + L 
Sbjct: 1711 AQNSGEAEYIEKVVYSVKQNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELL 1770

Query: 596  QMMNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
            Q   K LL        ++  L+ +Y    +   ++
Sbjct: 1771 QNEAKTLLAQANSKLQLLEDLERKY--EDNQKYLE 1803


>gi|126367|sp|P02469|LAMB1_MOUSE RecName: Full=Laminin subunit beta-1; AltName: Full=Laminin B1 chain;
            AltName: Full=Laminin-1 subunit beta; AltName:
            Full=Laminin-10 subunit beta; AltName: Full=Laminin-12
            subunit beta; AltName: Full=Laminin-2 subunit beta;
            AltName: Full=Laminin-6 subunit beta; AltName:
            Full=Laminin-8 subunit beta; Flags: Precursor
          Length = 1786

 Score = 43.1 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 69/575 (12%), Positives = 163/575 (28%), Gaps = 110/575 (19%)

Query: 113  GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS--RTDVVGMFVG 170
              +   +A+SP                 L   GI  +E  +  TK ++     V      
Sbjct: 1228 NEIKDILAQSPA-------------AEPLKNIGILFEE-AEKLTKDVTEKMAQVEVKLTD 1273

Query: 171  GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNYR 225
                SN    +      E  S+D  V            S+       +T++F+       
Sbjct: 1274 TASQSNSTAGELGALQAEAESLDKTVKELAEQLEFIKNSDIQGALDSITKYFQM-----S 1328

Query: 226  APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
                KR++    D +   ++  ++ D ++    + +  +   +      L        DE
Sbjct: 1329 LEAEKRVNASTTDPNSTVEQSALTRDRVEDLMLERESPFKEQQEEQARLL--------DE 1380

Query: 286  AFQSLKKGKKFIQLAE-----EQGKSLSDISLGS-------------------------- 314
                L+        A+       G   S+   G                           
Sbjct: 1381 LAGKLQS-LDLSAAAQMTCGTPPGADCSESECGGPNCRTDEGEKKCGGPGCGGLVTVAHS 1439

Query: 315  -FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
             + K    D    D + +LA+    + ++  +       V   +         +K +   
Sbjct: 1440 AWQKAMDFD---RDVLSALAEVEQLSKMVSEA------KVRADEAKQNAQDVLLKTNATK 1490

Query: 374  QMRITKASEKVKEDYKRLEEFL----ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
            + ++ K++E ++   K++  FL    A   S++ ++                      +E
Sbjct: 1491 E-KVDKSNEDLRNLIKQIRNFLTEDSADLDSIEAVANEVLKSGNASTPQQLQNLTEDIRE 1549

Query: 430  VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
                  + +++ +    D   ++   + L +         +     D     V   +++ 
Sbjct: 1550 RVETLSQVEVILQQSAADIARAE---LLLEEAKRASKSATDVKVTADM----VKEALEEA 1602

Query: 490  WKTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
             K    AE+   +A++           +  E +   +   +  + +        ++ R  
Sbjct: 1603 EKAQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKA 1662

Query: 539  NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLT 595
             +N          V+S            +G     +K   S +          +  + L 
Sbjct: 1663 AQNSGEAEYIEKVVYSVKQNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELL 1722

Query: 596  QMMNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
            Q   K LL        ++  L+ +Y    +   ++
Sbjct: 1723 QNEAKTLLAQANSKLQLLEDLERKY--EDNQKYLE 1755


>gi|57505879|ref|ZP_00371804.1| probable periplasmic protein Cj1289 [Campylobacter upsaliensis
           RM3195]
 gi|57015909|gb|EAL52698.1| probable periplasmic protein Cj1289 [Campylobacter upsaliensis
           RM3195]
          Length = 272

 Score = 43.1 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/377 (9%), Positives = 97/377 (25%), Gaps = 115/377 (30%)

Query: 19  VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
           +++ + F +  ++  +     +S  + V ++ +                          +
Sbjct: 4   ILMILLFFVAIVNAKVL----NSVALVVEKEPITNYDIEQ-----------------TMK 42

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
             +     ++ L  L++       I+   +  +   +   I++        NK + + F 
Sbjct: 43  LLKLP--REQALAVLINEKMELSQIKQFSIVVNELELDTAISKI----LTQNKMNLEQFK 96

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
           + L  +G N + +  +  K L +  +                                  
Sbjct: 97  NSLKAKGQNYELFRHNLKKDLEKRKLYEKIAS---------------------------- 128

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
                   D S     ++FE  K+ +       +           +K++     +     
Sbjct: 129 ----MNKTDFSEESAKKFFEANKEKFLFYTSIDVKIYRSSDQVILEKMKTDKKIILKAQN 184

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
            N   + +                       LK G+                        
Sbjct: 185 VNLNPHNADPRLL-------------ALLSQLKIGE------------------------ 207

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
                              F+PV++   G+ +  V     +    F+++K  + N     
Sbjct: 208 -------------------FSPVLNSKEGFELYEVMAKSGANVPEFEQIKDSVMNVYFNE 248

Query: 379 KASEKVKEDYKRLEEFL 395
           +    +++ + +L   L
Sbjct: 249 QRQNYIQDYFDKLRSKL 265


>gi|225375931|ref|ZP_03753152.1| hypothetical protein ROSEINA2194_01567 [Roseburia inulinivorans DSM
           16841]
 gi|225212184|gb|EEG94538.1| hypothetical protein ROSEINA2194_01567 [Roseburia inulinivorans DSM
           16841]
          Length = 920

 Score = 43.1 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 46/302 (15%)

Query: 27  IWGLSDALFSVSGSSTVV------SVGRQKVPFSSFINSWKQ--ELGMISQKIGFVVNSE 78
           + G++       G+ST+       +V  +    +SFI+  ++  +   ++ ++   V+  
Sbjct: 159 VTGIASGGNFSQGASTITQQLLKNTVFTEWTSETSFIDKLERKIQEQYLAVQLEKKVSKN 218

Query: 79  RARSVGLDKKILDN------LVSGATLDQFIEDIGLEADHGRVWGEIARSPL-FHGKDNK 131
                 L+   L        + S     + + +  L      V   I ++P  F+   N 
Sbjct: 219 WIMENYLNAINLGQNTLGVAVASERYFGKDVSE--LTLSECAVLAAITQNPSRFNPISNP 276

Query: 132 FSHD-----VFVSRLAREGINEKEYIDHY------TKMLSRTDVVGMFVGGMRPSNLLLD 180
             +      V  + L +  I++ EY +           L   ++    +       L   
Sbjct: 277 EKNAERRMKVLNNMLDQGFISQSEYDEAVADNVYDRIQLVNVELQDNGINSYFIDELTDQ 336

Query: 181 QAKRFYFE---NRSVDY-------IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
             +    +     +  Y       + + +     I + ++  +       +DNY +    
Sbjct: 337 VIRDLVEQKGYTETQAYKTLYQSGLTIYSTQDMDIQNIADEEV-----NNQDNYTSSPKV 391

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
             SY +            S   + + Y   K K       T   + F ++++AD A +  
Sbjct: 392 SFSYRVSIRSTDGSVKNYSEQTMLSYY---KNKDNPNFKSTNYSINFASEEDADAAIEQY 448

Query: 291 KK 292
           K 
Sbjct: 449 KA 450


>gi|12851534|dbj|BAB29079.1| unnamed protein product [Mus musculus]
          Length = 911

 Score = 43.1 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 66/545 (12%), Positives = 163/545 (29%), Gaps = 93/545 (17%)

Query: 141 LAREGINEKEYIDHYTKMLS--RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
           L   GI  +E  +  TK ++     V          SN    +      E  S+D  V  
Sbjct: 368 LKNIGILFEE-AEKLTKDVTEKMAQVEVKLTDTASQSNSTAGELGALQAEAESLDKTVKE 426

Query: 199 NRHVPAIADPSN-----AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
                     S+       +T++F+           KR++    D +   ++  ++ D +
Sbjct: 427 LAEQLEFIKNSDIQGALDSITKYFQM-----SLEAEKRVNASTTDPNSTVEQSALTRDRV 481

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE-----EQGKSLS 308
           +    + +  +   +      L        DE    L+       +A+       G   S
Sbjct: 482 EDLMLERESPFKEQQEEQARLL--------DELAGKLQS-LDLSAVAQMTCGTPPGADCS 532

Query: 309 DISLGS---------------------------FSKEYIPDVSLADSIFSLAKKGDFTPV 341
           +   G                            + K    D    D + +LA+    + +
Sbjct: 533 ESECGGPNCRTDEGEKKCGGPGCGGLVTVAHSAWQKAMDFD---RDVLSALAEVEQLSKM 589

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL-ALGTS 400
           +  +       V   +         +K +   + ++ K++E ++   K++  FL      
Sbjct: 590 VSEA------KVRADEAKQNAQDVLLKTNATKE-KVDKSNEDLRNLIKQIRNFLTEDSAD 642

Query: 401 MDEI-SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
           +D I +   +++ +++P      +++       +    Q+   +      +++   + L 
Sbjct: 643 LDSIEAVANEVLKMEMPSTPQQLQNLTEDIRERVETLSQVEVILQQSAADIARAELL-LE 701

Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ-----------LVL 508
           +         +     D     V   +++  K    AE+   +A++           +  
Sbjct: 702 EAKRASKSATDVKVTADM----VKEALEEAEKAQVAAEKAIKQADEDIQGTQNLLTSIES 757

Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
           E +   +   +  + +        ++ R   +N          V+S            +G
Sbjct: 758 ETAASEETLTNASQRISKLERNVEELKRKAAQNSGEAEYIEKVVYSVKQNADDVKKTLDG 817

Query: 569 LSYVVFKVTNSKVG---PVQEKDKFISYLTQMMNKDLLD------SVIAYLKSQYSVTVH 619
                +K   S +          +  + L Q   K LL        ++  L+ +Y    +
Sbjct: 818 ELDEKYKKVESLIAQKTEESADARRKAELLQNEAKTLLAQANSKLQLLEDLERKY--EDN 875

Query: 620 DNLIQ 624
              ++
Sbjct: 876 QKYLE 880


>gi|226192799|pdb|3GPK|A Chain A, Crystal Structure Of Ppic-Type Peptidyl-Prolyl Cis-Trans
           Isomerase Domain At 1.55a Resolution.
 gi|226192800|pdb|3GPK|B Chain B, Crystal Structure Of Ppic-Type Peptidyl-Prolyl Cis-Trans
           Isomerase Domain At 1.55a Resolution
          Length = 112

 Score = 43.1 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 12/107 (11%)

Query: 263 KYFSPEIRTVEQLVFPNQ-------KEADEAFQSLKKGKKFIQLAE---EQGKSLSDISL 312
              + E R  E  +   +         A++  + LK+G  F+  A    E   +     L
Sbjct: 2   SLGTEEYRIGEIFLAATEENKPQVFANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDL 61

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           G      +P   LA +  S    G     +    G+ I ++ + +  
Sbjct: 62  GWIRLAQLP-TELATTAASXG-PGQLAGPVEIRGGFSILYLIDKREG 106


>gi|326928025|ref|XP_003210185.1| PREDICTED: LOW QUALITY PROTEIN: laminin subunit beta-2-like
            [Meleagris gallopavo]
          Length = 1814

 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 83/285 (29%), Gaps = 35/285 (12%)

Query: 376  RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
            +   A ++ +   + L         +       K  + +  L   A  D   +  A + +
Sbjct: 1464 KADSALDRARHAQEELRRAAGEVAQLSHRVAEAKGKADEAWLQAQAALDKANQTRARVEH 1523

Query: 436  KEQLLFR------VFGKDDPLSKDHT---------VALPDGSYMWVQIKESIPARDRKLE 480
              + L         F   +    +           ++LP       ++ E I AR R L 
Sbjct: 1524 SNKELRELISHVKAFLSQEGADPESIEVVASRVLELSLPASPAQIHRLAEEIKARVRSLA 1583

Query: 481  EVLT-------DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL---- 529
             V         DV++  + ++ A+   ++A  +        +   +  +  G +      
Sbjct: 1584 SVDAILEQTAGDVRQAGQLLQDAQRAKARAEGVRGTAEAVQQALEEARQAQGTAGQALHS 1643

Query: 530  TTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
            T   I   +           G  Q  +  +E +     +        KV  +       +
Sbjct: 1644 TAADIQHSERAIGTMQMQTLGAEQQLAAAMERIGLLEGQTDA----LKVKRANNSLAATR 1699

Query: 588  DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ-RYLDGEK 631
                + + +    +    +   L+ +Y       L+Q R    ++
Sbjct: 1700 AHDAAGIARDRASEAKQVLEGPLRDRYRAA--QELVQHRAQGAQQ 1742


>gi|304392008|ref|ZP_07373950.1| survival protein SurA [Ahrensia sp. R2A130]
 gi|303296237|gb|EFL90595.1| survival protein SurA [Ahrensia sp. R2A130]
          Length = 343

 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 17/130 (13%)

Query: 38  SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
            G+   V V    +  +    + + +   + +  G                  + L+  A
Sbjct: 58  GGTRIAVLVNETPITSTDI--ARRAKFVRLRRMKGNATT-----------IATNELIDEA 104

Query: 98  TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
              +    I   A    V    A       K+NK +       L+R G   + + D+   
Sbjct: 105 IKMKEARRINAVASDAEVSSAYAGF----AKNNKLTQPQLGQVLSRSGTTVRGFKDYIRA 160

Query: 158 MLSRTDVVGM 167
            LS    VG 
Sbjct: 161 SLSWQRAVGS 170


>gi|78043454|ref|YP_359635.1| hypothetical protein CHY_0781 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995569|gb|ABB14468.1| hypothetical protein CHY_0781 [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 209

 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 52/178 (29%), Gaps = 32/178 (17%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           + +V +  + +  S      K      SQ    +             +IL +L+    + 
Sbjct: 42  NVLVIINGEALTTSEVNKVIKNYRIAGSQAANRL------------DQILSDLIDEKLIL 89

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q  +   ++A    +   +        K++     ++     +  ++EKEY +     + 
Sbjct: 90  QEAKRRKIDATREEIEARLK-----QLKNHL--PSLYQQIYTQ--MSEKEYKEILKNRII 140

Query: 161 RTDVVGMFVGG-----------MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
              +    +             +  S    +   ++  E R    I     ++    +
Sbjct: 141 IQKLYTEVISSQKNKPTGEHEPLETSQKEKEIFAKWVKELREKADITFLQENIQNFKE 198


>gi|114621529|ref|XP_001146882.1| PREDICTED: WD repeat domain 67 isoform 2 [Pan troglodytes]
          Length = 945

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 90/285 (31%), Gaps = 28/285 (9%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK---ILDNL-VSGATL 99
             V +Q+V   ++    ++ L    +    ++  E  + +   ++   +   L V    L
Sbjct: 593 AKVDQQRVEDEAWYQK-QELLRKAEETRREMLLQEEEKMIQQRQRLAAVKRELKVKEMHL 651

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
                   L+    +      +       D++    V++             I    + L
Sbjct: 652 QDAARRRFLKLQQDQ------QEMELRRLDDEIGRKVYMR---------DREIAATARDL 696

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY----IVLNNRHVPAIADPSNAVLTQ 215
               +       +   NL  +Q           D     + L       + +       +
Sbjct: 697 EMRQLELESQKRLYEKNLTENQEAVAKEMRADADAYRRKVDLEEHMFHKLIEAGETQSQK 756

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
             +  K+N    E   ++       +   K +  + +    Y++  +       + +E +
Sbjct: 757 TQKVIKENLAKAEQACLNTDWQI--QSLHKQKCDDLQRNKCYQEVAKLLRENRRKEIEII 814

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
               ++EA +  +   +GK+F   + ++  +LSD S   F K+ I
Sbjct: 815 NAMVEEEAKKWKE--AEGKEFRLRSAKKASALSDASRKWFLKQEI 857


>gi|118351696|ref|XP_001009123.1| hypothetical protein TTHERM_00264730 [Tetrahymena thermophila]
 gi|89290890|gb|EAR88878.1| hypothetical protein TTHERM_00264730 [Tetrahymena thermophila
           SB210]
          Length = 725

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 103/279 (36%), Gaps = 29/279 (10%)

Query: 47  GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
                  ++  N  KQ+    S ++  +   ++  ++ L +KI + ++   +L Q ++ +
Sbjct: 278 NGNSTLQNAISNISKQQELTNSNQMRDLFKQQKEENMSLRQKIQEQIIENDSLKQQVDSL 337

Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM------LS 160
             E  + R+   I+    F+G+      + F           + Y D   K+      L 
Sbjct: 338 KNE--NQRLKARISTLEGFNGQ--SVGKNGFQQE-------AQSYEDQIKKLYEEIKTLK 386

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
           + ++            ++ D+    +   +SV    +           +   L Q  ++ 
Sbjct: 387 QQNMKDTLKALEDEQEIIKDELNLKFEREKSVYEKKI------KDLQLTVEELNQRLQEN 440

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ-AEYEKNKEKYFSPEIRTVEQLVFPN 279
           +    + + K + Y    V++ +++   + + L      +   +  + + +   Q +   
Sbjct: 441 QSE-ISKKQKDLEYFKNLVNKSQREDTENENMLSLQRQLQELSQKNAQQEKEYRQKI--- 496

Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
            K+  E    +KK ++   +   + K+ SD  LG  S+E
Sbjct: 497 -KDLQEENSKIKKDRELEVIELRRSKTESDFELGKLSRE 534


>gi|302871629|ref|YP_003840265.1| hypothetical protein COB47_0977 [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574488|gb|ADL42279.1| hypothetical protein COB47_0977 [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 236

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 63/201 (31%), Gaps = 42/201 (20%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFS---------------VSGSSTVVSVGRQ 49
           IRK SR     + + ++ +  +++  S+ L S                     V  V  +
Sbjct: 2   IRKKSRRNF--LVIALISLSLILF--SNVLASDIWTECGKKIKEIEQSKDGRIVAVVNGE 57

Query: 50  KVPFSSFINSWKQELG--MISQKIGFVVNSERARS------VGLDKKILDNLVSGATLDQ 101
           K+       ++  E    +  ++    ++ E   +          K++L+ ++    L Q
Sbjct: 58  KIYKKDLEIAYALEEASYLYKKEFYQKLSKEEKINSIKPPVQKTKKEVLNEMIENLLLLQ 117

Query: 102 FIEDIGLEADHGRVWGEIAR-SPLFHG----------KDNKFSHDVFVSRLAREGINEKE 150
             +  G             +                 +  K ++D+    +   GI  +E
Sbjct: 118 AAKKEGYFISEKEARDYYKKTMKTMQDVISGKVLGDVESAKITNDMIEKLVKGWGITREE 177

Query: 151 Y----IDHYTKMLSRTDVVGM 167
           Y    I+    MLS   ++  
Sbjct: 178 YDKKTIEQTRNMLSIQKLLDA 198


>gi|225575736|ref|ZP_03784346.1| hypothetical protein RUMHYD_03829 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037049|gb|EEG47295.1| hypothetical protein RUMHYD_03829 [Blautia hydrogenotrophica DSM
           10507]
          Length = 419

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 43/394 (10%), Positives = 120/394 (30%), Gaps = 79/394 (20%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS--SFINSWKQEL--GMISQK 70
           +I +  L     + GL+     + G  TV +V ++++     SF+  ++Q     M    
Sbjct: 43  RIIVAALTGAIALSGLAGC-GQLDGGKTVATVDKEEISMGVLSFMTRYQQAQTAQMYMSM 101

Query: 71  IGFVVNS--ERARSV--------GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +G   +S  ++             L    L+ L     L    ++  +            
Sbjct: 102 LGSDPSSMWDQVEDEKKGTTYGDSLRDDALEQLEEMCLLKIHADEYEVTVTKEE------ 155

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
                              ++ R     K++++  ++ +    V          S   ++
Sbjct: 156 -----------------QEKIQRA---AKQFMEDNSEEVKSELV---------VSQKDVE 186

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           +        + +           A  + ++                     ++Y   D  
Sbjct: 187 RFLELTTYYQKMQ----EPIKADADMNVTDEEAA--------------QTTVTYTKVDP- 227

Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
                 E + DE + +  + ++   +     ++Q++     + D   +S+   +    L+
Sbjct: 228 ---PDTEATTDEEKEDSGQEEKDAKTKAQEILDQVLATEDADMDAIAKSVD--EDLSALS 282

Query: 301 EEQGK--SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
           E      +  +      S   +PD ++ +++  L      + +I     Y +  + +   
Sbjct: 283 ESFSTNEAEEEEDETDTSTGNLPD-AVKEAVKGLQDGEVVSSLIQDGDSYYVVRLDSAFD 341

Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                 +  K  I ++ +     + V+E   + +
Sbjct: 342 QEAT--ENQKDSIISERKQELYDDTVEEWRDKAD 373


>gi|119511780|ref|ZP_01630882.1| hypothetical protein N9414_16299 [Nodularia spumigena CCY9414]
 gi|119463553|gb|EAW44488.1| hypothetical protein N9414_16299 [Nodularia spumigena CCY9414]
          Length = 259

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 15/152 (9%)

Query: 209 SNAVLTQWFEKY---KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
           S+  L +W E+     + ++A   ++     F              +L++ Y + K +  
Sbjct: 74  SDDALQRWLEQNNLSAEQFKAIAIRQFKIEKFKHQTWGN-------DLESYYSQRKPQL- 125

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
             +      +   N   A E +  L+ G+  F +LA E  +     + G      +  + 
Sbjct: 126 --DRVVYSLIRTNNIGIAQEIYFRLQAGEQSFAELAREYSQGPEAQTNGLIGPVELQTIH 183

Query: 325 LADS-IFSLAKKGDFTPVIHGSFGYVIAHVSN 355
            A + + + ++     P        VI  +  
Sbjct: 184 PALARMLATSQPKQLLPPTQLENWIVIVRLEK 215


>gi|327402946|ref|YP_004343784.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
           DSM 16823]
 gi|327318454|gb|AEA42946.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
           DSM 16823]
          Length = 459

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 49/408 (12%), Positives = 110/408 (26%), Gaps = 63/408 (15%)

Query: 138 VSRLAREGINEKEYID--HYTKMLSRTDVVGMF-VGGMRPSNLLLDQAKRFYFENRSVDY 194
              L +     +         +ML    +V    +  ++ S+  +D         R ++ 
Sbjct: 46  KQSLKQNSAVPESIDQCVLLEQMLYNFLLVNQAELDSIQISDEQVDAEMENRL--RVIEN 103

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE---KEKKIEISND 251
            + N +            +  ++ K K   +      I   L            +++S  
Sbjct: 104 QMKNVKDDKGNPI----TIESFYGKTKSQIKEEFRVTIKKRLQGQEVERGITADLDVSPM 159

Query: 252 ELQAEYEKNK--------EKYFSPEIRTVEQLVFPNQKEADEAFQSLKK----GK-KFIQ 298
           E++  +             +    +I    ++   +++ A +    ++K    GK     
Sbjct: 160 EVENFFNSIPKDSLPYINSQLSFQQIAIFPKITKSDKEIAQKKIVEIRKSVVSGKMTMCA 219

Query: 299 LAEEQGKSLSDISL-GSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
            A             G +     +   +   + +SL K G+ + V    FG+    + + 
Sbjct: 220 AAFSNSDDPGSAKNCGRYEATRGMMARTFEATAYSL-KVGEISEVFETEFGFHFMQLIDR 278

Query: 357 KPS-------------FTVSFQEVKKDIAN---QMRITK-----ASEKVKEDYKRLEEFL 395
           K                  S     K +      ++  K     A      D    E   
Sbjct: 279 KGDDYIVSHILISPKFSLDSLDASSKRMEKCYEDLKQNKYTWDDAVRIYSNDVNTKENKG 338

Query: 396 ALGTSMD-----EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
            +   +       I +  ++  +   L D    +          + E+       +    
Sbjct: 339 FITNPITGEIKWSIEQVNEVDPMMFQLTDGLEINQVTSPNLYYDFNERKEAIRIVRVAER 398

Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
           +K H   L D   ++         R   LE+    V   W   K +  
Sbjct: 399 TKPHVGNLKDDYNLF---------RMMALEDKKQKVILAWTKTKISTA 437


>gi|308188832|ref|YP_003932963.1| Chaperone surA precursor [Pantoea vagans C9-1]
 gi|308059342|gb|ADO11514.1| Chaperone surA precursor [Pantoea vagans C9-1]
          Length = 71

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
            ++   +  A E    L KG  F +LA++     S 
Sbjct: 9   HILVKEEALAKEILAKLAKGGNFQELAKKHSTCPSG 44


>gi|115443012|ref|XP_001218313.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Aspergillus terreus
           NIH2624]
 gi|114188182|gb|EAU29882.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Aspergillus terreus
           NIH2624]
          Length = 212

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 40/110 (36%), Gaps = 31/110 (28%)

Query: 270 RTVEQLVFPNQKEADEAFQ----SLKKGK-KFIQLAE---EQGKSLSDISL--------- 312
           R  E  +  +++EA E  +     ++ G+    ++A+   +   +  +  L         
Sbjct: 97  REAE--ITRSKEEAIEILRGHERRIQSGEATLGEIAKSESDCSSARKNGDLYVFAGVPQS 154

Query: 313 ----------GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                     G F +  +      D+ F+L + G+ + ++  + G  +  
Sbjct: 155 STWMRLTHSSGFFGRGEM-QKEFEDAAFAL-QPGEVSGIVDTASGVHLIE 202


>gi|325001686|ref|ZP_08122798.1| hypothetical protein PseP1_23131 [Pseudonocardia sp. P1]
          Length = 288

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 6/131 (4%)

Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
                   +   +A QL  E +  G          G +         +           +
Sbjct: 146 VTADIAVAQTREEAEQLAREIAAGGARADSALAGAGTAQRD------LAIRPAETPQAAL 199

Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
           + +   P   V  FP+  G  +VV +VT+ ++G         + L Q    +    ++  
Sbjct: 200 TPLIGLPAGQVAAFPLGTGQGWVVVRVTDRRLGEPVPGASATAGLDQQTLAEAGVRLLTP 259

Query: 610 LKSQYSVTVHD 620
                 V ++ 
Sbjct: 260 TALDAGVELNP 270


>gi|195952796|ref|YP_002121086.1| SurA domain [Hydrogenobaculum sp. Y04AAS1]
 gi|195932408|gb|ACG57108.1| SurA domain [Hydrogenobaculum sp. Y04AAS1]
          Length = 316

 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 56/163 (34%), Gaps = 26/163 (15%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +  V S+  + +  S    +                 ++ A+        L  L+    +
Sbjct: 62  NRVVASINGEPILESDLKIAM------------VYFGTKDAK------LALKRLIDIYLI 103

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q++ +  +      +   I        ++N     ++   L ++GI+ KE+ D   K +
Sbjct: 104 YQYLSENHMATPESFLDQTIKD---LASQNNLTVEQLYEE-LKKQGISPKEFRDFLRKEI 159

Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFE---NRSVDYIVLN 198
             T   G      ++ +   ++  K  Y +    R ++ +++ 
Sbjct: 160 LATAGFGEYLRKAVKITPSDIELLKLKYGKPKIERDIELLIVP 202


>gi|125601574|gb|EAZ41150.1| hypothetical protein OsJ_25646 [Oryza sativa Japonica Group]
          Length = 239

 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 9/93 (9%)

Query: 272 VEQLVFPNQKE---ADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
           V+ L+   Q      D     +  G     LA E     S      LG   +  +     
Sbjct: 35  VQHLLVGEQDVRLLVDLEKNIITGGADLSDLAVEYSLCPSKENGGMLGWVRRGQMV-PEF 93

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
            ++ F               FG+ +  V   + 
Sbjct: 94  EEAAFGAPLNKVVR--CKTKFGWHLLQVLAERE 124


>gi|322815339|gb|EFZ24011.1| hypothetical protein TCSYLVIO_9871 [Trypanosoma cruzi]
          Length = 1200

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 98/295 (33%), Gaps = 28/295 (9%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            + I     D+ E  K +     E+    ++ +++    +    EQL+   Q+ ADE  +
Sbjct: 661 SREIFMANSDLEESTKTVSALEAEVNELKQRMQQQQIKRDRVHEEQLLKMEQEYADEQAR 720

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            L +   +  L  ++ +     +      +++ ++   +       K D++         
Sbjct: 721 RLAQ---YEALKADKNEQAIQFT------DFMAEMEAKEKEALKRTKEDYS--------- 762

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
               + +++       +++  +I ++     A  +     KR E+       + E+    
Sbjct: 763 --VKIQSLRDRADR-LRQLIDEIQHEQDAHLAEVREAAAKKRAEDNERQRKVLKELEEEN 819

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
             + ++        ++           +  LL     K     ++    L   + + +  
Sbjct: 820 HQLLMERDEDTKRTENYCALIEDETDVEVTLLKEDVEKRRKEQEEEVATLQTNNDLLLSR 879

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKT----AEEVSSKANQLVLEYSKEGKNFRD 519
           +  I A   +LE V  DV++  +   T     E        L  E+   G+   +
Sbjct: 880 ENIIKA---ELEAVKADVREKLRQQSTLESQIEAAKRDIGALTQEFKDRGETIAE 931


>gi|254453743|ref|ZP_05067180.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Octadecabacter
           antarcticus 238]
 gi|198268149|gb|EDY92419.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Octadecabacter
           antarcticus 238]
          Length = 388

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 53/173 (30%), Gaps = 21/173 (12%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           +  ++V    V                   +G            L+    + L+      
Sbjct: 12  APAITVNDSVVSEFEIDQRVI--------MLGTFRTP-----GNLEDTAREQLIEDRLKL 58

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
             +   GL      +   +     F  + N    D F++ L + G++E+ + D     +S
Sbjct: 59  AALNSAGLRITDEGL---VGAMGEFATRAN-MDLDQFITMLGQSGVSEETFRDFVRVNVS 114

Query: 161 -RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
            R  +   F    + S   +D A     ++ +   I +    +   A P +A 
Sbjct: 115 WRDFIRTRFNDRAQVSEADIDLA---LGQSDASSSIEVLLSEIIIPAPPESAE 164


>gi|308812929|ref|XP_003083771.1| Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana
           (ISS) [Ostreococcus tauri]
 gi|116055653|emb|CAL57738.1| Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana
           (ISS) [Ostreococcus tauri]
          Length = 228

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
              LG F +  +      D+ F+LA  G+ + V+    G  + 
Sbjct: 184 GGDLGEFGRGQMQKP-FEDATFALA-VGEMSGVVDTDSGVHVI 224


>gi|261329338|emb|CBH12319.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 383

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 10/78 (12%)

Query: 283 ADEAFQSLKKGKK-----FIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           A       K+ K      F+Q+  +    G +  D  LG   +            FSL K
Sbjct: 305 AQAILAQHKERKTWSLDEFVQVVRDFSECGSAKRDGDLG-MVESGTYTEGFDTVAFSL-K 362

Query: 335 KGDFTPVIHGSFGYVIAH 352
            G+ +  +    G  + +
Sbjct: 363 SGEVSAPVETELGVHLIY 380


>gi|72391154|ref|XP_845871.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175503|gb|AAX69643.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70802407|gb|AAZ12312.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 383

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 10/78 (12%)

Query: 283 ADEAFQSLKKGKK-----FIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
           A       K+ K      F+Q+  +    G +  D  LG   +            FSL K
Sbjct: 305 AQAILAQHKERKTWSLDEFVQVVRDFSECGSAKRDGDLG-MVESGTYTEGFDTVAFSL-K 362

Query: 335 KGDFTPVIHGSFGYVIAH 352
            G+ +  +    G  + +
Sbjct: 363 SGEVSAPVETELGVHLIY 380


>gi|187608393|ref|NP_001119862.1| xenotropic and polytropic retrovirus receptor 1 homolog [Danio
           rerio]
 gi|166227729|sp|A8DZH4|XPR1_DANRE RecName: Full=Xenotropic and polytropic retrovirus receptor 1
           homolog
 gi|157888757|emb|CAP09231.1| novel protein similar to vertebrate xenotropic and polytropic
           retrovirus receptor (XPR1) [Danio rerio]
          Length = 693

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 48/101 (47%), Gaps = 16/101 (15%)

Query: 217 FEKYKDNYRAPEYKR--ISY-----ILFDVHEKEKKIEISNDE-LQAEYEKNKEKYFSPE 268
           F ++   +  PE+++  I Y     +L+   ++   IE+++++ ++  Y K +EK+F   
Sbjct: 3   FTEHLSAHITPEWRKQYIQYEAFKEMLYSAQDQAPSIEVTDEDTVKRYYAKFEEKFFQTC 62

Query: 269 IRTVEQL-VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
            + + ++  F ++K A+   +       F  L  E   SL 
Sbjct: 63  EKELAKINTFYSEKLAEAQRR-------FATLQNELQSSLD 96


>gi|313624046|gb|EFR94130.1| ABC transporter, permease protein [Listeria innocua FSL J1-023]
          Length = 1136

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 95/319 (29%), Gaps = 38/319 (11%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK----EKYFSPEIRTVEQLVF 277
            ++  PEY   +      +    K   S+  ++ E + NK         PE R + ++  
Sbjct: 204 QDFDLPEY---TIASLTFNNLADKEAFSDAYIRTEKKDNKKVEQALAGQPEKR-LNKIKT 259

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGK-SLSDISLG-SFSKEYIPDVSLADSIFSLAKK 335
             QK+ D+A   + KGK   +L + Q K   +   L   FSK      S    I    K+
Sbjct: 260 SEQKKLDDATAEINKGK--AELQKNQAKLDAAKAQLDEGFSKYNAAKASYNAKI----KQ 313

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-ANQMRITKASEKVKEDYKRLEEF 394
           G+                 +   +        KK + A +M+I +  E + +  + L+E 
Sbjct: 314 GE-----------------SEIAAGEAELANAKKQLDAAKMQINQGEEAILQAERELKEG 356

Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG-KDDPLSKD 453
           LA     + +         +              ++       + L   F      L   
Sbjct: 357 LAAWNEANNLLNTANGYLKNARSTLENALKQ--PDLTDFEIDRESLTNAFNMAASELDIS 414

Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
                     +   + +          ++   +    K V   E     A  ++ E  ++
Sbjct: 415 AEELAEYEEAINTLLDDYENGAISD-AQIREALNAALKQVAEGENAYQSARTVLDEEKQK 473

Query: 514 GKNFRDIGKNLGASLLTTN 532
            +       +    L    
Sbjct: 474 IEQGEKTLASKQQQLEQAK 492


>gi|328954737|ref|YP_004372070.1| peptidoglycan-N-acetylmuramate O-acetyltransferase [Coriobacterium
           glomerans PW2]
 gi|328455061|gb|AEB06255.1| peptidoglycan-N-acetylmuramate O-acetyltransferase [Coriobacterium
           glomerans PW2]
          Length = 686

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 22/175 (12%)

Query: 123 PLFHG--KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
           P F                     G    +Y  +  + L+    V         S+  +D
Sbjct: 517 PQFQQRFPHGHIDAAKNRRF--EVGTT--QYESYVAQKLAGKIAVFALGTNGLVSDEQID 572

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
                  ++R V  + +N R       P+N  ++      K   R P  + I +  +   
Sbjct: 573 ALMSDVGKDRVV--VFVNTRSRQPWVAPTNEAIS------KARERYPNVRVIDWFGYSAG 624

Query: 241 EKE----KKIEISNDELQAE----YEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
           + +        +S    +A     Y++ K    + E        +   K+A +AF
Sbjct: 625 KGDLFDGDGTHLSEAGAKAYVDLVYDQIKGDLPAHEEDLASDPSYAAAKDALDAF 679


>gi|312194536|ref|YP_004014597.1| hypothetical protein FraEuI1c_0649 [Frankia sp. EuI1c]
 gi|311225872|gb|ADP78727.1| hypothetical protein FraEuI1c_0649 [Frankia sp. EuI1c]
          Length = 254

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 41/170 (24%), Gaps = 8/170 (4%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV----GLDKKILDN 92
            S +     V  + +   +      + +   +       ++   ++      L ++ L N
Sbjct: 22  TSHAGAAAQVDDKTIGTDTVRGIVDRGMSAYTAFAAAHPDAASQQTPVTRDDLQRRTLGN 81

Query: 93  LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
           LV            G+               +F       S   F    A  G   ++  
Sbjct: 82  LVEYQLDLTEARKRGITLSPQEADAYYQSYAIF----GSGSVAAFEQAGASAGFAPEDLR 137

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
                    + +       +  S+  +  A         V  + L+    
Sbjct: 138 TIIRTYALESKIEDAIAPDLVASSADVTSAYTSALTQFGVKSLPLSLTEA 187


>gi|300707607|ref|XP_002996004.1| hypothetical protein NCER_100963 [Nosema ceranae BRL01]
 gi|239605260|gb|EEQ82333.1| hypothetical protein NCER_100963 [Nosema ceranae BRL01]
          Length = 138

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             +  E         LG   K  +       + F + K+G     +    G+ I +
Sbjct: 83  AMVVSECKSKSKGGDLGFVCKNEMYK-EFEKAAF-MLKRGRLVGPVKTPSGFHIIY 136


>gi|317121534|ref|YP_004101537.1| protein serine phosphatase with GAF(s) sensor(s) [Thermaerobacter
           marianensis DSM 12885]
 gi|315591514|gb|ADU50810.1| protein serine phosphatase with GAF(s) sensor(s) [Thermaerobacter
           marianensis DSM 12885]
          Length = 832

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 23/180 (12%)

Query: 394 FLALGTS-MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
             A G   +D ++ +  +    +   ++  K           +    +     +    + 
Sbjct: 326 LRAGGNQVLDRLAEQGYVAGAVVAEAEWDAK-----------FARAAVASFRNRSHAPNP 374

Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
           D  +      Y+ V      P     L + +  +       + A  + +   Q + + S 
Sbjct: 375 DRAIERDIEGYVLV-----WPP-LPTLAQAIATLTARMHADENAARLQADNQQALAKLS- 427

Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSY 571
               F D    LG  L T   + R+    +     DG++ +F+ P        ++     
Sbjct: 428 ---AFHDAALALGGPLETGEVVTRLLALTQQLSHSDGVALLFTDPARGTWAEGLDGEALR 484


>gi|296417433|ref|XP_002838362.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634291|emb|CAZ82553.1| unnamed protein product [Tuber melanosporum]
          Length = 195

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                +  +   +     LG F +  +      ++ F+L + GD +  +  + G  +  
Sbjct: 136 ADLAVVESDCSSARKRGDLGFFGRGEM-QKEFEEAAFAL-RPGDMSHAVETASGIHLIE 192


>gi|311233706|gb|ADP86560.1| SurA domain protein [Desulfovibrio vulgaris RCH1]
          Length = 328

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 55/156 (35%), Gaps = 4/156 (2%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            +R++   F       ++ IS +E+++ Y  ++ ++          +    ++  + A  
Sbjct: 142 RRRLALTKFAQVVLRSEVAISLEEVESWYRGHQGEFRLAARVRFIMVEGDTREGVEAAAG 201

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           ++  G    ++ +       +  L    ++ IP  +      +  K G  +P I     +
Sbjct: 202 AVASGAAPEEVEKAFPGMSGNELL--IRRDRIP--AAWQKALAALKPGGVSPPIAFEGRW 257

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
           V   +    P+  +S  +    I  ++   K     
Sbjct: 258 VAFRLIESLPAQDMSVVDAYPVIERRLLEEKLDAAF 293


>gi|291391313|ref|XP_002712162.1| PREDICTED: laminin, beta 1 [Oryctolagus cuniculus]
          Length = 1744

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 67/528 (12%), Positives = 158/528 (29%), Gaps = 98/528 (18%)

Query: 160  SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLT 214
                V          SN    Q +    E  ++D  V            S+       +T
Sbjct: 1221 RMAQVEVKLSDTASQSNSTTTQLESLQAEAENLDNTVKELAEQLEFIKNSDIRGALDSIT 1280

Query: 215  QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
            ++F+    +  A E    S    D H   ++  ++ + ++    + + ++   +      
Sbjct: 1281 KYFQM---SLEAEERVNASTT--DPHSTVEQSALTRERVEDLMMEQESRFREKQEEQARL 1335

Query: 275  LVFPNQKEADEAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS--------------- 314
            L        DE    L+       +AE       G S S+   G                
Sbjct: 1336 L--------DELAGKLQS-LDLSAVAEMTCGTPPGASCSETECGGPNCRTDEGEKKCGGP 1386

Query: 315  ------------FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
                        + K    D    D + +LA+    + +           VS  K     
Sbjct: 1387 GCGGLVTVAHSAWQKAMDFD---RDVLSALAEVEQLSKM-----------VSEAKQRADE 1432

Query: 363  SFQEVKKDI----ANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKIVSIDLP 416
            + Q  +  +    A + ++ K++E ++   K++ +FL      +D I +   +++ +++P
Sbjct: 1433 AKQNAQGVLLKTNATKEKVDKSNEDLRNLIKQIRDFLTQDSADLDSIEAVANEVLKMEMP 1492

Query: 417  LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
                  +++       +    Q+   +      +++   + L +         +      
Sbjct: 1493 STPEQLQNLTEDIRERVESLSQVEVILQQSAADIARAEML-LEEAKRASKSATDVKVTA- 1550

Query: 477  RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ--- 533
               + V   +++  K    AE+   +A++ +        +          +L   +Q   
Sbjct: 1551 ---DTVKEALEEAEKAQIAAEKALKQADEDIQGTQNLLTSIESETAASEETLFNASQRIS 1607

Query: 534  --------INRMDNENKFFGYDGISQVFSGP---VEMVKCFPIENGLSYVVFKVTNSKVG 582
                    + R   +N          V S      ++ K    E G  Y   +   +K  
Sbjct: 1608 ELERNMEELKRKSAQNSGEAEYIEKVVHSVKQSVEDVKKVLDGELGEKYKQAENVIAKKS 1667

Query: 583  PVQEKDKFISYLTQMMNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
                  +  + + Q   K LL        ++  L+ +Y    +   ++
Sbjct: 1668 QESADARRKAEMLQNEAKTLLAQANSKLQLLKDLERKY--EDNQKYLE 1713


>gi|312864592|ref|ZP_07724823.1| putative foldase protein PrsA [Streptococcus downei F0415]
 gi|311099719|gb|EFQ57932.1| putative foldase protein PrsA [Streptococcus downei F0415]
          Length = 357

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 78/269 (28%), Gaps = 57/269 (21%)

Query: 15  KIF--LVVLFVPFLIWGLSDALFSVSGSS---TVVSVGRQKVPFSSFINSWKQELGMISQ 69
           KIF  L+V  +   I G+   L+  S  S    + S+  +++  +             ++
Sbjct: 44  KIFRSLLVFVLAMAIGGVGTYLYMNSRPSEKTVLASMKGKEITVADL----------YNR 93

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
           + G              + +L+ ++S    D++ +          V  +   S       
Sbjct: 94  QKGNQAT---------KEALLETILSDILEDKYGKK----VSQDEVNKQYQESA--QKAG 138

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           + FS     S L + G  +  Y +     L +   +         +   L    + Y  +
Sbjct: 139 SNFS-----SMLDQYGYTQDSYKNLIRLQLLQNYALKTAAKKDL-TEKKLKSLYKDYNPD 192

Query: 190 RSV---------------DYIVLNNRHVPAIADPSNAVLT------QWFEKYKDNYRAPE 228
            ++               D    +      I   +N            ++  K +   PE
Sbjct: 193 ITISFVKTDDESKANSLHDQATADGADFSQIVKDNNGQENVSFDSGDKYDSNKSSSLPPE 252

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEY 257
             + +    D       I++   +    Y
Sbjct: 253 DVQKAAFKLDKDGVSDTIKVQETDNSTSY 281



 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 75/245 (30%), Gaps = 33/245 (13%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
           +T +  M    +  ++L   Q      +   ++ I+ +          S   + + +++ 
Sbjct: 74  KTVLASMKGKEITVADLYNRQKGNQATKEALLETILSDILEDKYGKKVSQDEVNKQYQES 133

Query: 221 KDN-------------YRAPEYKRISYILFDVH---EKEKKIEISNDELQAEYEKNKEKY 264
                           Y    YK +  +    +   +   K +++  +L++ Y+      
Sbjct: 134 AQKAGSNFSSMLDQYGYTQDSYKNLIRLQLLQNYALKTAAKKDLTEKKLKSLYKDYNPDI 193

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQGK----SLSDISLGSFSK-E 318
                  +  +   ++ +A+         G  F Q+ ++       S         +K  
Sbjct: 194 T------ISFVKTDDESKANSLHDQATADGADFSQIVKDNNGQENVSFDSGDKYDSNKSS 247

Query: 319 YIPDVSLADSIFSLAKKG--DFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
            +P   +  + F L K G  D   V        Y +  V+         ++  KK + + 
Sbjct: 248 SLPPEDVQKAAFKLDKDGVSDTIKVQETDNSTSYYVVKVTAKNE-KNPDWKNYKKRLTDI 306

Query: 375 MRITK 379
               K
Sbjct: 307 YVNQK 311


>gi|51849615|dbj|BAD42337.1| trypsin [Nannochloris bacillaris]
          Length = 299

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 9/95 (9%)

Query: 269 IRTVEQLVFP--NQKEADEAFQSLKKG-KKFIQLAEEQGKSLS---DISLGSFSKEYIPD 322
              V  ++ P  ++   ++    +  G      LA+E     S      +G   K     
Sbjct: 87  QVRVSHILLPPGSESTIEDFKSQILNGTATLETLAKEHSTCPSASRGGDIGWIQKGRTV- 145

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
                + +S  K    T      FG  +  V   +
Sbjct: 146 REFEIAAYSTPKDSFST--CTTKFGVHLIQVKEER 178


>gi|332237978|ref|XP_003268181.1| PREDICTED: laminin subunit beta-1 isoform 2 [Nomascus leucogenys]
          Length = 1810

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 69/574 (12%), Positives = 170/574 (29%), Gaps = 108/574 (18%)

Query: 113  GRVWGEIARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
              +   +A+SP         N F                ++ I   T+M++   V     
Sbjct: 1252 SEIKDILAQSPAAEPLKNIGNLFEEA-------------EKLIKDVTEMMA--QVEVKLS 1296

Query: 170  GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNY 224
                 SN    +      E  S+D  V            S+       +T++F+    + 
Sbjct: 1297 DTTSQSNSTAKELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITKYFQM---SL 1353

Query: 225  RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             A E    S    + +   ++  +  D ++    + + ++   +      L        D
Sbjct: 1354 EAEERVNASTT--EPNSTVEQSALMRDRVEDVMMEQESQFKEKQEEQARLL--------D 1403

Query: 285  EAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS------------------------- 314
            E    L+        AE       G S S+   G                          
Sbjct: 1404 ELAGKLQS-LDLSAAAEMTCGTPPGASCSETECGGPNCRTDEGEKKCGGPGCGGLVTVAH 1462

Query: 315  --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              + K    D    D + +LA+    + ++  +           K S       +K +  
Sbjct: 1463 NAWQKAMDLDQ---DVLSALAEVEQLSKMVSEAK----LRADEAKQSAEDIL--LKTNAT 1513

Query: 373  NQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEV 430
             + ++ K++E+++   K++  FL      +D I +   +++ +++P      +++     
Sbjct: 1514 KE-KMDKSNEELRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIR 1572

Query: 431  AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
              +    Q+   +      +++   + L +         +     D     V   +++  
Sbjct: 1573 ERVESLSQVEVILQQSAADIARAEML-LEEAKRASKSATDVKVTADM----VKEALEEAE 1627

Query: 491  KTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            K    AE+   +A++           +  E +   +   +  + +        ++ R   
Sbjct: 1628 KAQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELKRKAA 1687

Query: 540  ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQ 596
            +N          V++            +G     +K      +K        +  + + Q
Sbjct: 1688 QNSGEAEYIEKVVYTVKQSAEDVKRTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQ 1747

Query: 597  MMNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
               K LL        ++  L+ +Y    +   ++
Sbjct: 1748 NEAKTLLAQANSKLQLLKDLERKY--EDNQKYLE 1779


>gi|332237976|ref|XP_003268180.1| PREDICTED: laminin subunit beta-1 isoform 1 [Nomascus leucogenys]
          Length = 1885

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 69/574 (12%), Positives = 170/574 (29%), Gaps = 108/574 (18%)

Query: 113  GRVWGEIARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
              +   +A+SP         N F                ++ I   T+M++   V     
Sbjct: 1327 SEIKDILAQSPAAEPLKNIGNLFEEA-------------EKLIKDVTEMMA--QVEVKLS 1371

Query: 170  GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNY 224
                 SN    +      E  S+D  V            S+       +T++F+    + 
Sbjct: 1372 DTTSQSNSTAKELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITKYFQM---SL 1428

Query: 225  RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             A E    S    + +   ++  +  D ++    + + ++   +      L        D
Sbjct: 1429 EAEERVNASTT--EPNSTVEQSALMRDRVEDVMMEQESQFKEKQEEQARLL--------D 1478

Query: 285  EAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS------------------------- 314
            E    L+        AE       G S S+   G                          
Sbjct: 1479 ELAGKLQS-LDLSAAAEMTCGTPPGASCSETECGGPNCRTDEGEKKCGGPGCGGLVTVAH 1537

Query: 315  --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              + K    D    D + +LA+    + ++  +           K S       +K +  
Sbjct: 1538 NAWQKAMDLDQ---DVLSALAEVEQLSKMVSEAK----LRADEAKQSAEDIL--LKTNAT 1588

Query: 373  NQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEV 430
             + ++ K++E+++   K++  FL      +D I +   +++ +++P      +++     
Sbjct: 1589 KE-KMDKSNEELRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIR 1647

Query: 431  AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
              +    Q+   +      +++   + L +         +     D     V   +++  
Sbjct: 1648 ERVESLSQVEVILQQSAADIARAEML-LEEAKRASKSATDVKVTADM----VKEALEEAE 1702

Query: 491  KTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            K    AE+   +A++           +  E +   +   +  + +        ++ R   
Sbjct: 1703 KAQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELKRKAA 1762

Query: 540  ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQ 596
            +N          V++            +G     +K      +K        +  + + Q
Sbjct: 1763 QNSGEAEYIEKVVYTVKQSAEDVKRTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQ 1822

Query: 597  MMNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
               K LL        ++  L+ +Y    +   ++
Sbjct: 1823 NEAKTLLAQANSKLQLLKDLERKY--EDNQKYLE 1854


>gi|88608000|ref|YP_506608.1| hypothetical protein NSE_0732 [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600169|gb|ABD45637.1| hypothetical protein NSE_0732 [Neorickettsia sennetsu str.
           Miyayama]
          Length = 307

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 43/132 (32%), Gaps = 18/132 (13%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           + ++  VV  + FL               T   VG   +      N ++  + M+ +K  
Sbjct: 1   MFRVICVVFLLSFL-----SLPSYSIEVKTAAMVGDVIISNQDVRN-YQNFVVMLGEKSD 54

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
              ++           +L+ ++      Q+ + +GL     +    +       G ++  
Sbjct: 55  LSYSA-----------VLEQMIDLEVCYQYAKRVGLPFSDQKYDAALKHLRAL-GINHGA 102

Query: 133 SHDVFVSRLARE 144
              +F   L ++
Sbjct: 103 HMALFEEYLKKQ 114


>gi|332816911|ref|XP_003309859.1| PREDICTED: LOW QUALITY PROTEIN: laminin subunit beta-2-like [Pan
            troglodytes]
          Length = 1792

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/266 (10%), Positives = 68/266 (25%), Gaps = 24/266 (9%)

Query: 373  NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
                   A  + +     L+  LA G S+       +  + +      A  D        
Sbjct: 1439 AAATADLALGRARHTQAELQRALAEGGSILSRVAETRRQASEAQQRAQAALDKANASRGQ 1498

Query: 433  IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE---------------SIPARDR 477
            +    Q L  +                    +  ++ E               +I  R R
Sbjct: 1499 VEQANQELRELIQSVKDFLNQEGADPDSIEMVATRVLELSIPASAEQIQHLAGAIAERVR 1558

Query: 478  KLEEVLTDVKKDWKTVKTAEEVSSKANQL---VLEYSKEGKNFRDIGKNLGASLLTTNQI 534
             L +V   + +    V+ AE++   A +      +  ++ +  +   +    +       
Sbjct: 1559 SLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQKAETVQAALEEAQRAQGIAQGA 1618

Query: 535  NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV------FKVTNSKVGPVQEKD 588
             R    +       + QV        +        +  +       K+  +         
Sbjct: 1619 IRGAVADTRDTEQTLYQVQERMAGAEQALSSAGERARQLDALLEALKLKRAGNSLAASTA 1678

Query: 589  KFISYLTQMMNKDLLDSVIAYLKSQY 614
            + ++   Q   ++    +   L  QY
Sbjct: 1679 EEMAGSAQGRAQEAEQLLRGPLGDQY 1704


>gi|131840094|ref|YP_001096103.1| ORF68 [Cyprinid herpesvirus 3]
 gi|109706669|gb|ABG42895.1| ORF68 [Cyprinid herpesvirus 3]
          Length = 2267

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 86/266 (32%), Gaps = 28/266 (10%)

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGM----FVGGMRPSNLLLDQAKRFYFENRSV-D 193
           S L    +N ++  D + +  +    +          ++ +N    + K      +S  D
Sbjct: 335 SLLDTARLNYQQLEDQFKQTTAELAGIKADAQSVADAIKAANDEHQKTKDALAHTQSAYD 394

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
             +       A    S A L +  +  K N       RIS +  +       +++ + E+
Sbjct: 395 LTMEQVNEYQAKLQASEAALKEAHDTAKANMTVKAQSRISELEAEAVLGRDTMKVKDAEV 454

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISL 312
                           R ++  +   + E   A   L   +     LA+    ++     
Sbjct: 455 ----------------RDLKTKLASAKNETAAALSRLADKEDEIETLAKTLADAVESAKQ 498

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
            + +       S+ D    L ++ +       +    +A+V+          ++ ++   
Sbjct: 499 QNETIGRNAAESIKDLALRLKRQEELAKDAEAN----LANVTRDLERRMK--EQAEEYNN 552

Query: 373 NQMRITKASEKVKEDYKRLEEFLALG 398
           N++    A   +++  K LE+ LA  
Sbjct: 553 NELNYAAALTALQQSSKELEQQLADA 578


>gi|209413796|ref|NP_001125159.1| WD repeat-containing protein 67 [Pongo abelii]
 gi|75070862|sp|Q5RD21|WDR67_PONAB RecName: Full=WD repeat-containing protein 67
 gi|55727160|emb|CAH90336.1| hypothetical protein [Pongo abelii]
          Length = 944

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 90/285 (31%), Gaps = 28/285 (9%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK---ILDNL-VSGATL 99
             V +Q+V   ++    ++ L    +    ++  E  + +   ++   +   L V    L
Sbjct: 591 AKVDQQRVEDEAWYQK-QELLRKAEETRREMLLQEEEKMIQQRQRLAAVKRELKVKEMHL 649

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
                   L+    +      +       D++    V++             I    + L
Sbjct: 650 QDAARRRFLKLQQDQ------QEMELRRLDDEIGRKVYMR---------DREIAATAREL 694

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY----IVLNNRHVPAIADPSNAVLTQ 215
               +       +   NL  +Q           D     + L       + +       +
Sbjct: 695 EMRQLELESQKRLYEKNLTENQEAVAKEMRADADAYRQKVDLEEHMFHKLIEAGETQSQK 754

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
             +  K+N    E   ++       +   K +  + +    Y++  +       + +E +
Sbjct: 755 TQKVIKENLAKAEQACLNTDWQI--QSLHKQKCDDLQRNKCYQEVAKLLRENRRKEIEII 812

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
               ++EA +  +   +GK+F   + ++  +LSD S   F K+ I
Sbjct: 813 NAMVEEEAKKWKE--AEGKEFCLRSAKKASALSDASRKWFLKQEI 855


>gi|119703755|ref|NP_002283.3| laminin subunit beta-2 precursor [Homo sapiens]
 gi|156630892|sp|P55268|LAMB2_HUMAN RecName: Full=Laminin subunit beta-2; AltName: Full=Laminin B1s
            chain; AltName: Full=Laminin-11 subunit beta; AltName:
            Full=Laminin-14 subunit beta; AltName: Full=Laminin-15
            subunit beta; AltName: Full=Laminin-3 subunit beta;
            AltName: Full=Laminin-4 subunit beta; AltName:
            Full=Laminin-7 subunit beta; AltName: Full=Laminin-9
            subunit beta; AltName: Full=S-laminin subunit beta;
            Short=S-LAM beta; Flags: Precursor
 gi|119585362|gb|EAW64958.1| laminin, beta 2 (laminin S), isoform CRA_a [Homo sapiens]
 gi|119585363|gb|EAW64959.1| laminin, beta 2 (laminin S), isoform CRA_a [Homo sapiens]
 gi|225000494|gb|AAI72384.1| Laminin, beta 2 (laminin S) [synthetic construct]
          Length = 1798

 Score = 42.3 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 80/274 (29%), Gaps = 34/274 (12%)

Query: 376  RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
            R+ +   +  E  +R +  L    +      + +  + +L  +  + KD   +E A    
Sbjct: 1476 RVAETRRQASEAQQRAQAALDKANASR---GQVEQANQELQELIQSVKDFLNQEGADPDS 1532

Query: 436  KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
             E +  RV     P S +    L            +I  R R L +V   + +    V+ 
Sbjct: 1533 IEMVATRVLELSIPASAEQIQHLA----------GAIAERVRSLADVDAILARTVGDVRR 1582

Query: 496  AEEVSSKANQL---VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
            AE++   A +      +  ++ +  +   +    +        R    +       + QV
Sbjct: 1583 AEQLLQDARRARSWAEDEKQKAETVQAALEEAQRAQGIAQGAIRGAVADTRDTEQTLYQV 1642

Query: 553  FSGPVEMVKCFPIENGLSYVVFKVTNS-----------------KVGPVQEKDKFISYLT 595
                    +        +  +  +  +                   G  Q + +    L 
Sbjct: 1643 QERMAGAERALSSAGERARQLDALLEALKLKRAGNSLAASTAEETAGSAQGRAQEAEQLL 1702

Query: 596  QMMNKDLLDSVIAYLKSQY-SVTVHDNLIQRYLD 628
            +    D   +V A  + +   V       ++  D
Sbjct: 1703 RGPLGDQYQTVKALAERKAQGVLAAQARAEQLRD 1736


>gi|8170714|gb|AAB34682.2| laminin beta 2 chain [Homo sapiens]
          Length = 1798

 Score = 42.3 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 80/274 (29%), Gaps = 34/274 (12%)

Query: 376  RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
            R+ +   +  E  +R +  L    +      + +  + +L  +  + KD   +E A    
Sbjct: 1476 RVAETRRQASEAQQRAQAALDKANASR---GQVEQANQELQELIQSVKDFLNQEGADPDS 1532

Query: 436  KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
             E +  RV     P S +    L            +I  R R L +V   + +    V+ 
Sbjct: 1533 IEMVATRVLELSIPASAEQIQHLA----------GAIAERVRSLADVDAILARTVGDVRR 1582

Query: 496  AEEVSSKANQL---VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
            AE++   A +      +  ++ +  +   +    +        R    +       + QV
Sbjct: 1583 AEQLLQDARRARSWAEDEKQKAETVQAALEEAQRAQGIAQGAIRGAVADTRDTEQTLYQV 1642

Query: 553  FSGPVEMVKCFPIENGLSYVVFKVTNS-----------------KVGPVQEKDKFISYLT 595
                    +        +  +  +  +                   G  Q + +    L 
Sbjct: 1643 QERMAGAERALSSAGERARQLDALLEALKLKRAGNSLAASTAEETAGSAQGRAQEAEQLL 1702

Query: 596  QMMNKDLLDSVIAYLKSQY-SVTVHDNLIQRYLD 628
            +    D   +V A  + +   V       ++  D
Sbjct: 1703 RGPLGDQYQTVKALAERKAQGVLAAQARAEQLRD 1736


>gi|1103585|emb|CAA92279.1| laminin beta 2 chain [Homo sapiens]
          Length = 1798

 Score = 42.3 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 80/274 (29%), Gaps = 34/274 (12%)

Query: 376  RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
            R+ +   +  E  +R +  L    +      + +  + +L  +  + KD   +E A    
Sbjct: 1476 RVAETRRQASEAQQRAQAALDKANASR---GQVEQANQELQELIQSVKDFLNQEGADPDS 1532

Query: 436  KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
             E +  RV     P S +    L            +I  R R L +V   + +    V+ 
Sbjct: 1533 IEMVATRVLELSIPASAEQIQHLA----------GAIAERVRSLADVDAILARTVGDVRR 1582

Query: 496  AEEVSSKANQL---VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
            AE++   A +      +  ++ +  +   +    +        R    +       + QV
Sbjct: 1583 AEQLLQDARRARSWAEDEKQKAETVQAALEEAQRAQGIAQGAIRGAVADTRDTEQTLYQV 1642

Query: 553  FSGPVEMVKCFPIENGLSYVVFKVTNS-----------------KVGPVQEKDKFISYLT 595
                    +        +  +  +  +                   G  Q + +    L 
Sbjct: 1643 QERMAGAERALSSAGERARQLDALLEALKLKRAGNSLAASTAEETAGSAQGRAQEAEQLL 1702

Query: 596  QMMNKDLLDSVIAYLKSQY-SVTVHDNLIQRYLD 628
            +    D   +V A  + +   V       ++  D
Sbjct: 1703 RGPLGDQYQTVKALAERKAQGVLAAQARAEQLRD 1736


>gi|51557577|gb|AAU06429.1| surface antigen [Rickettsia japonica]
          Length = 1975

 Score = 42.3 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 92/277 (33%), Gaps = 19/277 (6%)

Query: 359 SFTVSFQEVK---KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS--I 413
           S   + +E+K   ++I  +++I K  +K+K+  K L         + +   +  I +  +
Sbjct: 331 SAQKTTEELKSRAEEIETKIKIGKNKDKIKKLEKELTSKNNKADRLFQKIEKIDIPANKV 390

Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
            +   +         +V+A   ++  +          +K       D      +   +  
Sbjct: 391 SIKSQETVPVTTASTKVSAFQAQQARINEARQGIFNKNKSS----GDN----ARKSSART 442

Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG--KNFRDIGKNLGASLLTT 531
            R++K +E    + +  K  K  +  S KA ++     KE      R +   +       
Sbjct: 443 EREKKKQEAQKQLSEIKKQEKAIKTASDKAKEVAASVKKETSRTALRAMQDKMNGDSDGP 502

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
                   +       G+ ++     E  + + +   +    + V      P QE +  I
Sbjct: 503 TYKQPPKAKPTIPLSHGVQRILCEQPEDEEGYLVPRKVHQQPYTVM----LPNQEIEDPI 558

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
              ++ + +  +   I YL S      +   I   +D
Sbjct: 559 PSHSKDIYESKVSQYINYLNSIQPNQSNQAQIDSVID 595


>gi|291540816|emb|CBL13927.1| hypothetical protein RO1_36800 [Roseburia intestinalis XB6B4]
          Length = 361

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 46/152 (30%), Gaps = 15/152 (9%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
               ++++E +           +         V    +E +E    +     F + A+E 
Sbjct: 178 ADTNVTDEEAKTGAYSYVGISKTTHQDESGNTVDYTDEEKEELAAKVA---DFAKAAKED 234

Query: 304 GKSLSDISLGSFSKEYI---PDVSLAD---SIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           G   +    G           D S+ D   +     K+G+ T +I G   Y +A +    
Sbjct: 235 GLDAAAEDAGYTVSTGTFTQEDDSVDDNLLAALKNLKEGEVTDLIDGDSSYFVARLDKEV 294

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
                  ++  ++    +   +  +   E   
Sbjct: 295 D------EDATEETRQSIIEQRKDDLYDETLD 320


>gi|220904184|ref|YP_002479496.1| hypothetical protein Ddes_0911 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868483|gb|ACL48818.1| hypothetical protein Ddes_0911 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 390

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 86/355 (24%), Gaps = 88/355 (24%)

Query: 31  SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
              L        V +V  + +    ++ + +  L   S  +  +               L
Sbjct: 42  GGCLEGRLPEGVVATVNGEPI----YLRTVQALLDGRSAALDTMQRPSLENMKRQYGDAL 97

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
             L+  A ++Q +  + +      V   +A          +     F   LA E ++  E
Sbjct: 98  GTLIIYALVNQELRSLQIPVTESAVESAVANVRA--DYGGEEELARF---LAEESLDGNE 152

Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
           +       L+                          FE R           +      S 
Sbjct: 153 WRLLMRDYLAMQ-----------------------SFEKRV----------LLPGIRISL 179

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
             +  ++++++  +  PE   I               +    +              E +
Sbjct: 180 DSVRGYYKRHETEFNLPETLDICLTS----------AVDRQAVDNFCASFASVGPVREEQ 229

Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
           T E L+   +  A +   + +KG    +LA                              
Sbjct: 230 TGELLLQCVEAGAAQLPNAWQKG--LEKLA------------------------------ 257

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
                G   P       +    +    P+  +S  E    I N +R  +      
Sbjct: 258 ----PGQCLPPRQEGDRWFGLALVRRNPAHVMSVAEAYPLIENILREREKEAAFA 308


>gi|225436662|ref|XP_002276538.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296083867|emb|CBI24255.3| unnamed protein product [Vitis vinifera]
          Length = 296

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 6/75 (8%)

Query: 289 SLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            +  G     LA E            LG   K  +      ++ F               
Sbjct: 112 RISGGVDLSDLAVEYSICPSKEEGGMLGWVRKGQMV-PEFEEAAFKAPLNKVVR--CKTK 168

Query: 346 FGYVIAHVSNIKPSF 360
           FG+ +  V + +   
Sbjct: 169 FGWHLLQVISEREES 183


>gi|129560587|dbj|BAF48882.1| hypothetical protein [Cyprinid herpesvirus 3]
          Length = 2255

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 86/266 (32%), Gaps = 28/266 (10%)

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGM----FVGGMRPSNLLLDQAKRFYFENRSV-D 193
           S L    +N ++  D + +  +    +          ++ +N    + K      +S  D
Sbjct: 335 SLLDTARLNYQQLEDQFKQTTAELAGIKADAQSVADAIKAANDEHQKTKDALAHTQSAYD 394

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
             +       A    S A L +  +  K N       RIS +  +       +++ + E+
Sbjct: 395 LTMEQVNEYQAKLQASEAALKEAHDTAKANMTVKAQSRISELEAEAVLGRDTMKVKDAEV 454

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISL 312
                           R ++  +   + E   A   L   +     LA+    ++     
Sbjct: 455 ----------------RDLKTKLASAKNETAAALSRLADKEDEIETLAKTLADAVESAKQ 498

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
            + +       S+ D    L ++ +       +    +A+V+          ++ ++   
Sbjct: 499 QNETIGRNAAESIKDLALRLKRQEELAKDAEAN----LANVTRDLERRMK--EQAEEYNN 552

Query: 373 NQMRITKASEKVKEDYKRLEEFLALG 398
           N++    A   +++  K LE+ LA  
Sbjct: 553 NELNYAAALTALQQSSKELEQQLADA 578


>gi|106006049|gb|ABF81812.1| hypothetical protein [Cyprinid herpesvirus 3]
          Length = 2267

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 86/266 (32%), Gaps = 28/266 (10%)

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGM----FVGGMRPSNLLLDQAKRFYFENRSV-D 193
           S L    +N ++  D + +  +    +          ++ +N    + K      +S  D
Sbjct: 335 SLLDTARLNYQQLEDQFKQTTAELAGIKADAQSVADAIKAANDEHQKTKDALAHTQSAYD 394

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
             +       A    S A L +  +  K N       RIS +  +       +++ + E+
Sbjct: 395 LTMEQVNEYQAKLQASEAALKEAHDTAKANMTVKAQSRISELEAEAVLGRDTMKVKDAEV 454

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISL 312
                           R ++  +   + E   A   L   +     LA+    ++     
Sbjct: 455 ----------------RDLKTKLASAKNETAAALSRLADKEDEIETLAKTLADAVESAKQ 498

Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
            + +       S+ D    L ++ +       +    +A+V+          ++ ++   
Sbjct: 499 QNETIGRNAAESIKDLALRLKRQEELAKDAEAN----LANVTRDLERRMK--EQAEEYNN 552

Query: 373 NQMRITKASEKVKEDYKRLEEFLALG 398
           N++    A   +++  K LE+ LA  
Sbjct: 553 NELNYAAALTALQQSSKELEQQLADA 578


>gi|121602042|ref|YP_988820.1| SurA domain-containing protein [Bartonella bacilliformis KC583]
 gi|120614219|gb|ABM44820.1| SurA domain protein [Bartonella bacilliformis KC583]
          Length = 325

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/200 (10%), Positives = 51/200 (25%), Gaps = 21/200 (10%)

Query: 2   LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVPFSSFINSW 60
              ++K    ++   F   L V  L   +       +  + V  +V    +         
Sbjct: 4   FTAVKKNKNHFLTLFFTAFLGVSSLFINVLSISPVFAQQTKVALTVNGNAITNYDIQRRI 63

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
                             + +   L  +  + L+        I+   ++     V     
Sbjct: 64  -------------AFLKLQQKKENLSVQAKNELIDEMLKKIEIKQRNIDVSDSEVDAAFE 110

Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG---MFVGGMRPSNL 177
                    N  + +     L +  +  K + D+    +    +V       GG+     
Sbjct: 111 NF----AVQNHMTINQLSEMLTQTNVTVKHFKDYIRGQIGWGRLVNARYQAEGGLLTEQE 166

Query: 178 LLDQAKRFYFENRSVDYIVL 197
           +  +  +   +  S D   L
Sbjct: 167 VAHKILKNGGQKPSTDEYTL 186


>gi|255281411|ref|ZP_05345966.1| hypothetical protein BRYFOR_06748 [Bryantella formatexigens DSM
           14469]
 gi|255267899|gb|EET61104.1| hypothetical protein BRYFOR_06748 [Bryantella formatexigens DSM
           14469]
          Length = 415

 Score = 42.3 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 33/228 (14%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           + W+       L +   + G S    SV+ S  +++V   KV         +        
Sbjct: 6   KRWITAGICAGLAMT-ALTGCS----SVNKSDVLMTVDDTKVTLGEAAFWLRYNQANTEM 60

Query: 70  KIGFVVNSE-----------RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
            +G +                A    + +++LD++     ++Q + D  +E         
Sbjct: 61  YLGGLFGDGNMWEQDLFGTGEAYGTTMKEQVLDDIKEMVLMEQHMSDYDVELTAEEEASI 120

Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
                 F   ++          L     +E+      T    R  V      G+  +   
Sbjct: 121 DEAVQAFLDAND-------DKTLKAMYADEETVDRMLTLRTVREKVEAAVKAGVDTNVTD 173

Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPA----IADPSNAVLTQWFEKYKD 222
            + A       +S+ Y+               +P++       ++ +D
Sbjct: 174 EEAA------QKSIQYVSFTAASTTDEDGNTVEPTDEEKEAVKQQAQD 215


>gi|294900863|ref|XP_002777151.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
 gi|239884612|gb|EER08967.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
          Length = 219

 Score = 41.9 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           K   ++  + G +     LG  ++  +   S     F+L   G  +P+IH   G  + 
Sbjct: 160 KDNARIESDCGTAKRGGDLGEIARGRM-QPSFEKVAFALP-PGTLSPIIHTESGVHLI 215


>gi|294896512|ref|XP_002775594.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
 gi|294896514|ref|XP_002775595.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
 gi|239881817|gb|EER07410.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
 gi|239881818|gb|EER07411.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
          Length = 182

 Score = 41.9 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           K   ++  + G +     LG  ++  +   S     F+L   G  +P+IH   G  + 
Sbjct: 123 KDNARIESDCGTAKRGGDLGEIARGRM-QPSFEKVAFALP-PGTLSPIIHTESGVHLI 178


>gi|297488687|ref|XP_002697087.1| PREDICTED: laminin, beta 2 (laminin S) [Bos taurus]
 gi|296474911|gb|DAA17026.1| laminin, beta 2 (laminin S) [Bos taurus]
          Length = 1802

 Score = 41.9 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 85/288 (29%), Gaps = 32/288 (11%)

Query: 373  NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
              + + +A     E  + L E   + + + E  R+                  +G+   A
Sbjct: 1453 ADLALGRARHTQAELQRALAEGGGILSQVAETRRQAGEAQQRAQAALDKAHASRGQVEQA 1512

Query: 433  IPYKEQLLFRV--FGKDDPLSKDHT---------VALPDGSYMWVQIKESIPARDRKLEE 481
                 QL+  V  F   +    D           +++P       Q+   I  R R L +
Sbjct: 1513 NQELRQLIQNVKDFLSQEGADPDSIEMVATRVLELSIPASPEQIQQLAGEIAERVRSLAD 1572

Query: 482  VLTDVKKDWKTVKTAEE-------VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ- 533
            V T + +    V+ AE+         S+A     +         +  +  GA+       
Sbjct: 1573 VDTILARTVGDVRRAEQLLNDARRARSRAEGEKQKAETVQAALEEAQRAQGAAQGAIQGA 1632

Query: 534  -INRMDNENKFFGY----DGISQVFSGPV-------EMVKCFPIENGLSYVVFKVTNSKV 581
             ++  D E           G  Q  S           +++   ++   + +         
Sbjct: 1633 VVDTQDTEQTLHQVQERMAGAEQALSSAGERAQQLDGLLEALKLKRAGNSLAASSAEETA 1692

Query: 582  GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY-SVTVHDNLIQRYLD 628
            G  Q++ +    L Q    D   +V A  + +   V       ++  D
Sbjct: 1693 GSAQDRAREAEQLLQGPLGDQYQTVRALAERKAQDVLAAQARAEQLRD 1740


>gi|159029162|emb|CAO87522.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 246

 Score = 41.9 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 70/199 (35%), Gaps = 17/199 (8%)

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
           E R+  Y              ++  +  W ++   +    EY     IL D+  ++ K E
Sbjct: 41  EERNAAYSRF----YQNNQIANDEQMKSWLQQNGMDCEQLEY----LILRDIKLEKFKQE 92

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKS 306
             ++++++ + + K +    +      +   N   A E F  ++  +  F +LA++  + 
Sbjct: 93  TWDNKVESYFLQVKSQL---DKVVYSLIRTKNIGIAQELFFRIQDRENSFAELAKKYSQG 149

Query: 307 LSDISLGSFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK--PSFTV 362
               + G      +  P   +   I   +K G   P        VI  +           
Sbjct: 150 SEAETGGLLGPVELSTPHPQIGQ-ILKASKPGQLWPPTQVGEWVVIVRLEKYLSCELDPP 208

Query: 363 SFQEVKKDIANQMRITKAS 381
           + Q ++ D+  Q  +T+  
Sbjct: 209 TRQRLRNDLFQQWLMTQMQ 227


>gi|123454927|ref|XP_001315212.1| PPIC-type PPIASE domain containing protein [Trichomonas vaginalis
           G3]
 gi|121897882|gb|EAY02989.1| PPIC-type PPIASE domain containing protein [Trichomonas vaginalis
           G3]
          Length = 879

 Score = 41.9 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 15/103 (14%)

Query: 276 VFPNQKEA----DEAFQSLKKGKK-FIQLA---EEQGKSLSDISLGSFSKEYIPDVSLAD 327
           +   ++EA       ++ +  G+K F ++A    + G + +   L   + E + D +   
Sbjct: 74  IEKTKQEAYNIIKSLYEKIISGEKTFEEIAYIWSDDGSAENRGDLNWGAIE-VYDTNFTK 132

Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSN-----IKPSFTVSFQ 365
              SL    + +       G+ I   ++             F+
Sbjct: 133 VAMSLKYN-EISQPFLTRAGWHICKKTDGANSSYLSGGGPPFE 174


>gi|331249905|ref|XP_003337566.1| ESS1 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309316556|gb|EFP93147.1| ESS1 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 170

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 33/115 (28%)

Query: 268 EIRTVEQLVFP-----------------NQKEADEAF-----------QSLKKGKKFIQL 299
           E      L+                    ++EA E                +  ++F +L
Sbjct: 54  EKVRASHLLVKHAQSRRPASWKEANITRTKEEAIEILKGYQSKLSEIGDKAELAEQFAEL 113

Query: 300 AEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           A          +   LG F +  +      D+ ++L    + +P++    G  + 
Sbjct: 114 ASAHSDCSSHANGGDLGLFGRGQMQKP-FEDATYALGIH-ELSPIVDTESGVHLI 166


>gi|223996533|ref|XP_002287940.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977056|gb|EED95383.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 225

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 20/109 (18%)

Query: 269 IRTVEQLVFP-NQKEADEAFQSLKKGKK---------------FIQLAEEQGKS----LS 308
             T   ++ P +Q  A    Q ++                   F   A++  +     ++
Sbjct: 40  RVTAYHILLPKSQDVALALKQKIRNANSPMKGSDSKPMYIVDAFCIAAKKYSQDKDVAIN 99

Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
              LG+ + +        D        G+ +  I   +GY +  V+   
Sbjct: 100 GGLLGTLAPQGYCRAKELDKACYEVPLGEVSGPIESDYGYHLLLVTERT 148


>gi|227873680|ref|ZP_03991914.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227840469|gb|EEJ50865.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 329

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 7/120 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
           VEQ+V  ++  A E  + +K  G  F   A +  +        +F +    +   A   F
Sbjct: 178 VEQIVVQDEDLAKELEEKVKLAGANFSYYARQYSEDPELQKNLAFGER---EDEYAKVAF 234

Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
           SL +  + + V      Y I    +          E K+ +   +R     E  +   K 
Sbjct: 235 SL-EDNEISSVFSQDGKYYILKCLSSYDEEATK--ERKERLETAIRSLHFQESYEAYQKE 291


>gi|254463317|ref|ZP_05076733.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Rhodobacterales
           bacterium HTCC2083]
 gi|206679906|gb|EDZ44393.1| peptidyl-prolyl cis-trans isomerase SurA, putative
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 416

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 47/158 (29%), Gaps = 18/158 (11%)

Query: 28  WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
           +G      +    +T + V  + +         K         +G +            K
Sbjct: 27  FGSVQYSNAQGLFATAIKVNDRSITNFEIDERVK--------FLGLLRTPGD-----HRK 73

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
              + L+         + +G+      V    A    F G+ N  + + F+  +   G++
Sbjct: 74  LAREQLIEDRLKLGAAQSVGISPTQEEVD---AGMGEFAGRVNLETAE-FIKAINAGGVS 129

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKR 184
           E  +       L+   +V    G  +  S   +D+   
Sbjct: 130 EDAFRAFVLSGLAWRQLVQAKFGSRITVSEEDVDRLIA 167


>gi|84516316|ref|ZP_01003676.1| PPIC-type PPIASE domain [Loktanella vestfoldensis SKA53]
 gi|84510012|gb|EAQ06469.1| PPIC-type PPIASE domain [Loktanella vestfoldensis SKA53]
          Length = 415

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 26/143 (18%)

Query: 3   EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
           + +R  S TW A + L +        GL     + +  +  ++V  + +           
Sbjct: 9   DRMRAFS-TWTAVLALAL--------GLGQPATAQNQFAPAITVNERVITQYEL-----T 54

Query: 63  ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
           +   + +  G   +  +A          D L++     Q I+ +GL+     +   +   
Sbjct: 55  QRIRLLEVFGTRGDIAQA--------ARDALIADRLKQQEIDRVGLQVPPEAINAAL--- 103

Query: 123 PLFHGKDNKFSHDVFVSRLAREG 145
             F G+ +      F + LA+ G
Sbjct: 104 DEFAGRAD-MDLAQFNAMLAQNG 125


>gi|306821298|ref|ZP_07454909.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
 gi|304550664|gb|EFM38644.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
          Length = 1995

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 74/191 (38%), Gaps = 20/191 (10%)

Query: 355  NIKPSFTVSFQEVKKD---IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
             ++   T  F+E+  +   I  + +  +A EK++   K  E  L+   ++D+++   + +
Sbjct: 1268 EVEKVITTKFEELIAEAKNIKQEKKTDEAFEKLQNAIKVAESKLSTIKTVDDLNLAIEEL 1327

Query: 412  SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
                  +         KE+   P ++++      K D  +K+    L       +++ E 
Sbjct: 1328 D---NAIKNFNDSADKKELDKKPLEDKIKQAKEIKQDKKTKEAFDKLQS----AIKVAEG 1380

Query: 472  IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL----------VLEYSKEGKNFRDIG 521
                 + L+E+   V++  K ++     + +  ++            +  K+GK   +  
Sbjct: 1381 KLPTIKTLDELTAAVEELSKAIEEFNLSADEKEEVDKTSLVNKIAEAKNIKQGKKTDEAF 1440

Query: 522  KNLGASLLTTN 532
            + L  ++ T  
Sbjct: 1441 EKLQNAIKTAE 1451



 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 77/210 (36%), Gaps = 27/210 (12%)

Query: 223  NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
            NY       I   L    E   K  I+ +++Q  ++ N    +  E     +L    Q+E
Sbjct: 836  NYTKESMASIKKELDKAKELISKENITEEDVQKVFDMNLSNLYILERYDTSKL----QEE 891

Query: 283  ADEAFQSLKKGKKFIQ-----------LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
              +A   L  GK + +            AE   ++  +  L + ++  +   S+ + + +
Sbjct: 892  IQKAKNILNNGKTYTEDTKKALEEVIKTAENFVETAKNTRLIADNRAELIK-SIQEKLNA 950

Query: 332  LAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-----VSFQEVKKDI---ANQMRITKASEK 383
            L    + +         ++  ++  K          +F E++  I    +++   K  E+
Sbjct: 951  LL---ESSKPQETDKKPLVEKINQAKAINQGKKTKEAFDELQNAIKIAESKLSTVKTDEE 1007

Query: 384  VKEDYKRLEEFLALGTSMDEISRREKIVSI 413
            VK+  K L++ +A      +     ++  +
Sbjct: 1008 VKKAVKELDDAIAKFNGSADKKDESQLEKL 1037


>gi|237734442|ref|ZP_04564923.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382262|gb|EEO32353.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 332

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 66/207 (31%), Gaps = 35/207 (16%)

Query: 200 RHVPAIADPSNAVLTQWFE-KYKDNYRAPEYKRISYILFDVHEKEKKIEISN-------- 250
             +   A+ +   +  ++E +Y DN        +S   F+  ++ ++  +          
Sbjct: 83  EDMETDANETVDQIQTYYENQYGDNAETQLQTALSSSGFNSLDEYRENMVRVYQRCNFLL 142

Query: 251 DELQAEYEK-NKEKYFSPEIRTVEQLVFP--------NQKEAD--EAFQSLKKGKKFIQL 299
             ++  +++   + Y     R    +             + A   E    L   K F  +
Sbjct: 143 AYVEKNFDEVFDDYYTQASPREASLIKVSMTDVENPTADETAKLSEVTALLSSSKSFGDI 202

Query: 300 AEEQGKSLSD----ISLGSFSKEYIPDVSL----ADSIFSLAKKGDFTPVIHGSFGYVIA 351
           A++     +       LG          +        I +LA  G+ +  I G+ GY   
Sbjct: 203 AKDYSDDTNTNKNKGKLGIVDTTSGLSQTFGSDVETKILALAS-GETSEAIKGTDGYYFV 261

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRIT 378
            V++           +KK+I   + I 
Sbjct: 262 KVTSTDK------DSIKKEIKKDLSID 282


>gi|157109051|ref|XP_001650503.1| laminin gamma 1 chain [Aedes aegypti]
 gi|108879155|gb|EAT43380.1| laminin gamma 1 chain [Aedes aegypti]
          Length = 1624

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 86/257 (33%), Gaps = 25/257 (9%)

Query: 365  QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
            +E + +I++++   +A +K+    K  E+ L     + + +    +   +L         
Sbjct: 1239 EEFRTNISSEL--QQAKDKLNTVSKLTEQALTKANEVYDDALSLFVAVNNL--------- 1287

Query: 425  VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
                    I   ++   R   + D +++D  + + D + + + + E+I   +  LE   +
Sbjct: 1288 --SPPSIDIDQIKKESNRYNKEADKINQDLDITIEDHNTLLIDVSENIELANTLLERAES 1345

Query: 485  DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
                  + V+  E     A + V E            K    +  T +       E+K  
Sbjct: 1346 QKDDAIRAVQELEFARELAEKAVAE-------GDGTLKKANFTYHTLSGFKNQVEESKQK 1398

Query: 545  GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD 604
              + +  V S   ++     +       +    N+ +   + +    +   Q    +   
Sbjct: 1399 AAEALKSVPSIKRQIENAIELIANSEAAL---KNANINAAESRSN--AQTAQKKYAEEAS 1453

Query: 605  SVIAYLKSQYSVTVHDN 621
             +   +K + + T +  
Sbjct: 1454 KLADNIKKRANTTKNTA 1470


>gi|325662341|ref|ZP_08150950.1| hypothetical protein HMPREF0490_01689 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471343|gb|EGC74566.1| hypothetical protein HMPREF0490_01689 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 353

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
            +++K+   F + A+E  K L   ++    +   PD  L      L + G+ + VI    
Sbjct: 213 QKAVKEEADFAKTAKE--KELEVKTMTFDEETTTPDEGLMTKANKLGE-GEVSEVIETDS 269

Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           GY +  V+++           K+ IA + +  +  +  +E  K ++
Sbjct: 270 GYYVLKVTSLLDREAT--DAEKESIAEERKEKQYKDLCEEWKKDVK 313


>gi|172037269|ref|YP_001803770.1| hypothetical protein cce_2354 [Cyanothece sp. ATCC 51142]
 gi|171698723|gb|ACB51704.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 267

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 63/183 (34%), Gaps = 14/183 (7%)

Query: 197 LNNRHVPAIADPSNA-VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
           L  +        S+   L  W + +       E       + D+  ++ K     D+L  
Sbjct: 62  LAKQQFYQRLQISDETQLKAWLDAHG---MTQEQLE-KLSVRDLKIEKFKQLTWADKLDP 117

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGS 314
            + K K +    +      +   +   A E +  +++G+    +LA +  +     + G 
Sbjct: 118 YFVKCKGQL---DRVVYSLIRTKDPGVAQELYFRIQEGENTLSELARQYSQGSEAQTGGL 174

Query: 315 FSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                +  P   +A  I + ++ G  +P       ++I  +     +      + ++ + 
Sbjct: 175 LGPVELNTPHPKIAQ-ILAASRPGQLSPPTQIGDWWIILRLEKYMSAQLD--DKTRQRLL 231

Query: 373 NQM 375
           N++
Sbjct: 232 NEL 234


>gi|167756723|ref|ZP_02428850.1| hypothetical protein CLORAM_02264 [Clostridium ramosum DSM 1402]
 gi|167702898|gb|EDS17477.1| hypothetical protein CLORAM_02264 [Clostridium ramosum DSM 1402]
          Length = 332

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 66/207 (31%), Gaps = 35/207 (16%)

Query: 200 RHVPAIADPSNAVLTQWFE-KYKDNYRAPEYKRISYILFDVHEKEKKIEISN-------- 250
             +   A+ +   +  ++E +Y DN        +S   F+  ++ ++  +          
Sbjct: 83  EDMETDANETVDQIQTYYENQYGDNAETQLQTALSSSGFNSLDEYRENMVRVYQRCNFLL 142

Query: 251 DELQAEYEK-NKEKYFSPEIRTVEQLVFP--------NQKEAD--EAFQSLKKGKKFIQL 299
             ++  +++   + Y     R    +             + A   E    L   K F  +
Sbjct: 143 AYVEKNFDEVFDDYYTQASPREASLIKVSMTDVENPTADETAKLSEVTALLSSSKSFGDI 202

Query: 300 AEEQGKSLSD----ISLGSFSKEYIPDVSL----ADSIFSLAKKGDFTPVIHGSFGYVIA 351
           A++     +       LG          +        I +LA  G+ +  I G+ GY   
Sbjct: 203 AKDYSDDTNTNKNKGKLGIVDTTSGLSQTFGSDVETKILALAS-GETSEAIKGTDGYYFV 261

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRIT 378
            V++           +KK+I   + I 
Sbjct: 262 KVTSTDK------DSIKKEIKKDLSID 282


>gi|149920919|ref|ZP_01909380.1| hypothetical protein PPSIR1_13875 [Plesiocystis pacifica SIR-1]
 gi|149818191|gb|EDM77646.1| hypothetical protein PPSIR1_13875 [Plesiocystis pacifica SIR-1]
          Length = 286

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/195 (11%), Positives = 51/195 (26%), Gaps = 40/195 (20%)

Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
            +   P+   L  ++      Y A      + +  +  +                     
Sbjct: 124 ASAEAPTLEELEAFYADNTARYAAAPRYDFTAVRVEAEDGPD------------------ 165

Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
                           ++  A +  + L  G     L  ++       + G  S++Y  D
Sbjct: 166 ----------------SKAAAQDVRRDLAAGVDPKTLG-DRVLRSKHFTPGRVSEQYGTD 208

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP-SFTVSFQEVKKDIANQMRITKAS 381
               +++  +  K     V+ G   + +  +  I+       F  V+  +      T+ S
Sbjct: 209 --FTEALLGMEAKTWT--VLDGGESWYVVRIDAIEARGEPKPFDAVRDRVQADWEATRRS 264

Query: 382 EKVKEDYKRLEEFLA 396
                    L    A
Sbjct: 265 VAFDAALDGLRARYA 279


>gi|282896362|ref|ZP_06304384.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Raphidiopsis brookii
           D9]
 gi|281198858|gb|EFA73737.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Raphidiopsis brookii
           D9]
          Length = 243

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 58/152 (38%), Gaps = 6/152 (3%)

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
             LTQ ++  K+   + E  +         E+ K++  +  ++ + + + K +    +  
Sbjct: 62  EQLTQEYQGQKEQGISQEQLQNMATRQLKLERFKEVTWAK-DIDSYFYQRKPQL---DRV 117

Query: 271 TVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDV-SLADS 328
               +   ++  A E +  +++G+  F QLA+E  +     + G      +  +  L   
Sbjct: 118 IYSLITTNDRGVAQEIYFRVQEGEQSFAQLAQEYSQGPEAKTSGLVGPVELQSLHPLLVR 177

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
           I S ++    +         VI  +  + P+ 
Sbjct: 178 ILSTSQPQQLSLPTAIEDWIVIVRLEKMLPAQ 209


>gi|167772368|ref|ZP_02444421.1| hypothetical protein ANACOL_03745 [Anaerotruncus colihominis DSM
           17241]
 gi|167665471|gb|EDS09601.1| hypothetical protein ANACOL_03745 [Anaerotruncus colihominis DSM
           17241]
          Length = 357

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 45/397 (11%), Positives = 111/397 (27%), Gaps = 58/397 (14%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           VAK    +     ++ GL+ A  +   +  V   G   VP   +I+        I  ++ 
Sbjct: 3   VAKRLAALGAAVLMVSGLA-ACSTGEDTKWVAKYGETTVPAGVYIDKLISSYTTIVSQLD 61

Query: 73  FVVNSERARS-------VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
             V                + +     L     +++   ++GL                F
Sbjct: 62  AEVKDPLKEQIDGVSVSQKITEDAQQQLHEYIAIERKFAEMGLTVSDADTAAIEQNVDQF 121

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
                    + + +     G++ + Y+  Y     R+ +      G   ++ + +Q  + 
Sbjct: 122 WAYVG----ETYQA----NGVSRESYVLSYLNGAKRSQIFQAIY-GEGGTDAVPEQELK- 171

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
                                        +++  Y      P     S            
Sbjct: 172 ----------------------------DKFYNDYAKILVIPATYNSSASSSSSESSGDA 203

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
              +++  Q   +   +KY   E       +   +    EA + +   +   + A  +  
Sbjct: 204 QAKADEAKQKASDL-IDKYL--EQAKAATTLEEMENVVYEAKKEITGNESLEKPASGESF 260

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
           ++       ++ E        D++F+ +  G  T V   +  Y+              F 
Sbjct: 261 TIFSRDSSPYTDEMT------DAVFNASY-GVPTKVETDTTIYLFVRYD--ISENEADFT 311

Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
             +  + + +R    S++V +    L +      ++ 
Sbjct: 312 AYRTSLVSALRSDAFSDQVAQWADSLSDVTYNDAALK 348


>gi|313890790|ref|ZP_07824415.1| putative foldase protein PrsA [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313120891|gb|EFR44005.1| putative foldase protein PrsA [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 313

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 76/240 (31%), Gaps = 22/240 (9%)

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
           T VV M    +  ++   +       +   +  I+            S+  + + + K  
Sbjct: 30  TKVVTMKGDTITVTDFYKEAKTSTAAQQSMLSLIMSRVFEQEYGKKVSDKKVEESYNKTA 89

Query: 222 DNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
             Y               E  +       + E   K E   +  +A Y+K  E Y SPE 
Sbjct: 90  QQYGSSFSEALGQAGLTTETYKKQIRTTMLVEYAVKQEAKKELTEANYKKAFESY-SPE- 147

Query: 270 RTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
            T + ++  ++ +A +  + +K  G  F ++A+E           +F        S   S
Sbjct: 148 MTTQVIIMDDEAKAKKVLEEVKAEGADFSKIAKENTVESGKKIDFTFDSAGTDLPSDVIS 207

Query: 329 IFSLAKKGDFT------PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +G  +              Y I ++           +E KK +   +  +K ++
Sbjct: 208 AAGKLNEGAKSELLTVMDPSTYQKKYYIVNMVKKADKKADW-KEYKKRLTEIIMKSKEND 266


>gi|1335202|emb|CAA56130.1| beta2/S laminin chain [Homo sapiens]
          Length = 1798

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 74/248 (29%), Gaps = 22/248 (8%)

Query: 376  RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
            R+ +   +  E  +R +  L    +      + +  + +L  +  + KD   +E A    
Sbjct: 1476 RVAETRRQASEAQQRAQAALDKANASR---GQVEQANQELQELIQSVKDFLNQEGADPDS 1532

Query: 436  KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
             E +  RV     P S +    L            +I  R R L +V   + +    V+ 
Sbjct: 1533 IEMVATRVLELSIPASAEQIQHLA----------GAIAERVRSLADVDAILARTVGDVRR 1582

Query: 496  AEEVSSKANQL---VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
            AE++   A +      +  ++ +  +   +    +        R    +       + QV
Sbjct: 1583 AEQLLQDARRARSWAEDEKQKAETVQAALEEAQRAQGIAQGAIRGAVADTRDTEQTLYQV 1642

Query: 553  FSGPVEMVKCFPIENGLSYVV------FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
                    +        +  +       K+  +         +  +   Q   ++    +
Sbjct: 1643 QERMAGAERALSSAGERARQLDALLEALKLKRAGNSLAASTAEETAGSAQGRAQEAEQLL 1702

Query: 607  IAYLKSQY 614
               L  QY
Sbjct: 1703 RGPLGDQY 1710


>gi|254511696|ref|ZP_05123763.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
 gi|221535407|gb|EEE38395.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
          Length = 73

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 7/58 (12%), Positives = 22/58 (37%)

Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
           G++   I   +G  +  V  ++P       +++  +    +     +  +  Y+ L +
Sbjct: 2   GEWAGPIQSGYGKHLIQVLAVEPGRLPPLNDIRSAVLQDWQRAMGEDLAQAQYETLAD 59


>gi|114704782|ref|ZP_01437690.1| survival protein sura precursor (peptidyl-prolyl cis-trans
           isomerase sura) [Fulvimarina pelagi HTCC2506]
 gi|114539567|gb|EAU42687.1| survival protein sura precursor (peptidyl-prolyl cis-trans
           isomerase sura) [Fulvimarina pelagi HTCC2506]
          Length = 308

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
           +K  D L+  A   Q I+  G+      V            K N  S       L   G 
Sbjct: 62  QKATDELIDEALKRQEIQRQGVNIPDEEVNAAYLNF----AKGNNLSEAQLAEVLGSAGF 117

Query: 147 NEKEYIDHYTKML 159
           + + + D+    +
Sbjct: 118 SPQAFKDYIRVQM 130


>gi|302766449|ref|XP_002966645.1| hypothetical protein SELMODRAFT_407700 [Selaginella moellendorffii]
 gi|300166065|gb|EFJ32672.1| hypothetical protein SELMODRAFT_407700 [Selaginella moellendorffii]
          Length = 747

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 15/96 (15%)

Query: 109 EADHGRVWGEIARSPLFHGKDNKFS--HDVFVS----------RLAREGINEKEYIDHYT 156
                 +   IAR P FH    +    H +F             L + G++E +Y D + 
Sbjct: 223 STSDEEMLDAIARHPEFHWAGGEIFLRHVLFNQAMPHWQDWESLLLKLGLSEAQYKDVF- 281

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
              +   ++      +     +L+    ++ E R +
Sbjct: 282 CDNTIQQLLAQV--SINVPPSILESTIAWFIEKRDL 315


>gi|295088064|emb|CBK69587.1| PPIC-type PPIASE domain. [Bacteroides xylanisolvens XB1A]
          Length = 419

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 10/119 (8%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKK--FIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
           P+  T    +   +   D  ++ ++      F +L E             + +       
Sbjct: 137 PQTVTSRH-LEEEKARMDSIYRVIQNQPDLNFNRLVEIYSDDKQS----RWIEGLETTSE 191

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
             D  FSLAK    +       G  I  V + + +F   ++ V   +  ++R  +  +K
Sbjct: 192 FEDVAFSLAKA-AVSQPFFTPEGIHILKVIDREEAFA--YENVSGRLIERLRRKEILDK 247


>gi|160895085|ref|ZP_02075859.1| hypothetical protein CLOL250_02636 [Clostridium sp. L2-50]
 gi|156863516|gb|EDO56947.1| hypothetical protein CLOL250_02636 [Clostridium sp. L2-50]
          Length = 365

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 102/269 (37%), Gaps = 32/269 (11%)

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
           I+   + ++R +V+   V     +  L+ QA  +       +               ++ 
Sbjct: 99  IEMDVEEMARREVISNIVQ----TKALIAQADEYKISLTEEEQAQAEQEAEDFYNSLTDE 154

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ--AEYEKNKEKYFSPE- 268
            L +   +     R  +   ++  ++D    +   E+S+++ +    Y+   E Y+  + 
Sbjct: 155 QLKETGMEADTPSRVLQENALAKKIYDHVMSDSSAEVSDEQARMTTFYDMFFECYYEDDF 214

Query: 269 ---IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG-----------S 314
              +   +  +   +++ADEA+ S+K+     QL++    +++   LG           +
Sbjct: 215 GNIVVYSKDKIAEQKQKADEAYTSIKQ-----QLSDNPNLNITF--LGHTNNLRYAGSHT 267

Query: 315 FSKEYIPDVSLADSIFSL--AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
            SK+ I +    + + +L   + GD +PVI    GY I  ++ +           K ++ 
Sbjct: 268 MSKDQILESYGQEVLDTLYDMQDGDISPVIETENGYHIFQMTYLTDEKAT--ATNKAELT 325

Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSM 401
            +      +  +     ++++      S+
Sbjct: 326 KEANDAYFNNLLTNWVSKIDKDYTYSKSV 354


>gi|157164911|ref|YP_001467478.1| putative periplasmic protein [Campylobacter concisus 13826]
 gi|112801060|gb|EAT98404.1| putative periplasmic protein [Campylobacter concisus 13826]
          Length = 276

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/307 (10%), Positives = 86/307 (28%), Gaps = 92/307 (29%)

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
           ++  L+ L+     D  I+++ L      +   I        K N  ++  F + +  +G
Sbjct: 51  EQDALNLLIRDRLEDAQIKNLNLSVTPFELNDRIEAI----AKQNGMTNSQFRNSIQAQG 106

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           ++  ++ ++    + +  +                                       A 
Sbjct: 107 MDFLDFKNNLEHKMLQEKLYKSIAA--------------------------------EAG 134

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE-KY 264
            + +      +F+   D ++     R+        +  +  + S   L     +     Y
Sbjct: 135 KNINEQKAKAYFDANPDKFKVFSTARVVVYRAKDPDLLEAQKTSPKLLDGVQTQEVSLDY 194

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
            S + R    +                                S  + G +++       
Sbjct: 195 QSIDPRLAAII--------------------------------SSTNNGDYTQ------- 215

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
                            + G   + +  V     S+T SF +VK ++ N++   +  + +
Sbjct: 216 ----------------PLQGPDSFDMFLVKEKIGSYTPSFADVKDNVINELYQGEQEKLM 259

Query: 385 KEDYKRL 391
            + +++L
Sbjct: 260 SDYFEKL 266


>gi|329663665|ref|NP_001039712.2| laminin subunit beta-2 [Bos taurus]
          Length = 1802

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 85/288 (29%), Gaps = 32/288 (11%)

Query: 373  NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
              + + +A     E  + L E   + + + E  R+                  +G+   A
Sbjct: 1453 ADLALGRARHTQAELQRALAEGGGILSQVAETRRQAGEAQQRAQAALDKAHASRGQVEQA 1512

Query: 433  IPYKEQLLFRV--FGKDDPLSKDHT---------VALPDGSYMWVQIKESIPARDRKLEE 481
                 QL+  V  F   +    D           +++P       Q+   I  R R L +
Sbjct: 1513 NQELRQLIQNVKDFLSQEGADPDSIEMVATRVLELSIPASPEQIQQLAGEIAERVRSLAD 1572

Query: 482  VLTDVKKDWKTVKTAEE-------VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ- 533
            V T + +    V+ AE+         S+A     +         +  +  GA+       
Sbjct: 1573 VDTILARTVGDVRRAEQLLNDARRARSRAEGEKQKAETVQAALEEAQRAQGAAQGAIQGA 1632

Query: 534  -INRMDNENKFFGY----DGISQVFSGPV-------EMVKCFPIENGLSYVVFKVTNSKV 581
             ++  D E           G  Q  S           +++   ++   + +         
Sbjct: 1633 VVDTQDTEQTLHQVQERMAGAEQALSSAGERAQQLDGLLEALKLKRAGNNLAASSAEETA 1692

Query: 582  GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY-SVTVHDNLIQRYLD 628
            G  Q++ +    L Q    D   +V A  + +   V       ++  D
Sbjct: 1693 GSAQDRAREAEQLLQGPLGDQYQTVRALAERKAQDVLAAQARAEQLRD 1740


>gi|224025970|ref|ZP_03644336.1| hypothetical protein BACCOPRO_02721 [Bacteroides coprophilus DSM
           18228]
 gi|224019206|gb|EEF77204.1| hypothetical protein BACCOPRO_02721 [Bacteroides coprophilus DSM
           18228]
          Length = 285

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 78/273 (28%), Gaps = 38/273 (13%)

Query: 136 VFVSRLARE------GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           ++   L         G +  ++ + Y +      ++     G  P NL L++    Y + 
Sbjct: 40  LYKEDLRAAMPVGIKGQDSIQFAERYIRTWVEDALLFHKAEGNVPDNLKLEELVASYRKA 99

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
             V        +         A + Q++++    +RA +       +    +      + 
Sbjct: 100 LIVHAYQEELVNQQLGDSIDEAEIKQYYQQNPTLFRATQPYVQGLFIKVPVKAPHLGNV- 158

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
               +  Y++N        +  + +    N    D  +           LA +      D
Sbjct: 159 ----RTWYKQN----TQDAVDRLLKYSIGNAVSYDYFYDRW---LPVSDLAAKIPLKELD 207

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP-SFTVSFQEVK 368
              G   K+   +                  V   +F Y + HV +  P    +  +  +
Sbjct: 208 TDFGYLEKKKNVE------------------VRDTAFCYFL-HVEHFLPEGEQLPLEYAR 248

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
            +I   +   K  E +    + L    +    +
Sbjct: 249 TEIKEILINLKRVEFINRVKQDLYNEASEDKDI 281


>gi|288818384|ref|YP_003432732.1| hypothetical protein HTH_1073 [Hydrogenobacter thermophilus TK-6]
 gi|288787784|dbj|BAI69531.1| hypothetical protein HTH_1073 [Hydrogenobacter thermophilus TK-6]
 gi|308751977|gb|ADO45460.1| SurA domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 290

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 96/279 (34%), Gaps = 38/279 (13%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              + SV  + +  S    +                  E         K+++ LV    L
Sbjct: 30  DKVIASVNGEPILESDVKLA------------------ELFYGTQDRHKVINKLVDVYLL 71

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            QF+E  G       +   +        K N    +     LA+E +   +      K L
Sbjct: 72  AQFLESRGGRVPEEYISATLMDI----AKANNTDLEGLAKELAKEELTLDDLKRFLEKEL 127

Query: 160 SRTDVVGMFVG-GMRPSNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADP-----SN 210
             T  + +++   ++ S+L ++  K    E    R +D +VL+ +    +        + 
Sbjct: 128 LSTQGLSIYLSKEIKVSDLDVELEKLKRGEVKLRRDIDLLVLDKKDGEKLLKMMEERKTL 187

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY----EKNKEKYF- 265
             + + F    ++    +   +  +  +V +      +  ++ +  Y    +  KE Y  
Sbjct: 188 QDIARAFSAKVESLSVEKGDLVEPLDKEVWKAPLNTLVVAEDGEHIYLAQVKDQKEIYSG 247

Query: 266 -SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
            S +    E L    +++  E  ++LKK K F+++  + 
Sbjct: 248 VSEDELRKEILAKKIEEKRRELLENLKK-KSFVKIFSDA 285


>gi|119603829|gb|EAW83423.1| laminin, beta 1, isoform CRA_a [Homo sapiens]
          Length = 1810

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 69/564 (12%), Positives = 167/564 (29%), Gaps = 106/564 (18%)

Query: 113  GRVWGEIARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
              +   +A+SP         N F                ++ I   T+M++   V     
Sbjct: 1252 SEIKDILAQSPAAEPLKNIGNLFEEA-------------EKLIKDVTEMMA--QVEVKLS 1296

Query: 170  GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNY 224
                 SN    +      E  S+D  V            S+       +T++F+    + 
Sbjct: 1297 DTTSQSNSTAKELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITKYFQM---SL 1353

Query: 225  RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             A E    S    + +   ++  +  D ++    + + ++   +      L        D
Sbjct: 1354 EAEERVNASTT--EPNSTVEQSALMRDRVEDVMMERESQFKEKQEEQARLL--------D 1403

Query: 285  EAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS------------------------- 314
            E    L+        AE       G S S+   G                          
Sbjct: 1404 ELAGKLQS-LDLSAAAEMTCGTPPGASCSETECGGPNCRTDEGERKCGGPGCGGLVTVAH 1462

Query: 315  --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              + K    D    D + +LA+    + ++  +           K S       +K +  
Sbjct: 1463 NAWQKAMDLDQ---DVLSALAEVEQLSKMVSEAK----LRADEAKQSAEDIL--LKTNAT 1513

Query: 373  NQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEV 430
             + ++ K++E+++   K++  FL      +D I +   +++ +++P      +++     
Sbjct: 1514 KE-KMDKSNEELRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIR 1572

Query: 431  AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
              +    Q+   +      +++   + L +         +     D     V   +++  
Sbjct: 1573 ERVESLSQVEVILQHSAADIARAEML-LEEAKRASKSATDVKVTADM----VKEALEEAE 1627

Query: 491  KTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            K    AE+   +A++           +  E +   +   +  + +        ++ R   
Sbjct: 1628 KAQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELKRKAA 1687

Query: 540  ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQ 596
            +N          V++            +G     +K      +K        +  + + Q
Sbjct: 1688 QNSGEAEYIEKVVYTVKQSAEDVKKTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQ 1747

Query: 597  MMNKDLLD------SVIAYLKSQY 614
               K LL        ++  L+ +Y
Sbjct: 1748 NEAKTLLAQANSKLQLLKDLERKY 1771


>gi|186837|gb|AAA59482.1| laminin B1 [Homo sapiens]
 gi|186876|gb|AAA59485.1| laminin B1 [Homo sapiens]
 gi|186913|gb|AAA59486.1| laminin B1 [Homo sapiens]
 gi|168275776|dbj|BAG10608.1| laminin subunit beta-1 precursor [synthetic construct]
          Length = 1786

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 69/564 (12%), Positives = 167/564 (29%), Gaps = 106/564 (18%)

Query: 113  GRVWGEIARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
              +   +A+SP         N F                ++ I   T+M++   V     
Sbjct: 1228 SEIKDILAQSPAAEPLKNIGNLFEEA-------------EKLIKDVTEMMA--QVEVKLS 1272

Query: 170  GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNY 224
                 SN    +      E  S+D  V            S+       +T++F+    + 
Sbjct: 1273 DTTSQSNSTAKELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITKYFQM---SL 1329

Query: 225  RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             A E    S    + +   ++  +  D ++    + + ++   +      L        D
Sbjct: 1330 EAEERVNASTT--EPNSTVEQSALMRDRVEDVMMERESQFKEKQEEQARLL--------D 1379

Query: 285  EAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS------------------------- 314
            E    L+        AE       G S S+   G                          
Sbjct: 1380 ELAGKLQS-LDLSAAAEMTCGTPPGASCSETECGGPNCRTDEGERKCGGPGCGGLVTVAH 1438

Query: 315  --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              + K    D    D + +LA+    + ++  +           K S       +K +  
Sbjct: 1439 NAWQKAMDLDQ---DVLSALAEVEQLSKMVSEAK----LRADEAKQSAEDIL--LKTNAT 1489

Query: 373  NQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEV 430
             + ++ K++E+++   K++  FL      +D I +   +++ +++P      +++     
Sbjct: 1490 KE-KMDKSNEELRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIR 1548

Query: 431  AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
              +    Q+   +      +++   + L +         +     D     V   +++  
Sbjct: 1549 ERVESLSQVEVILQHSAADIARAEML-LEEAKRASKSATDVKVTADM----VKEALEEAE 1603

Query: 491  KTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            K    AE+   +A++           +  E +   +   +  + +        ++ R   
Sbjct: 1604 KAQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELKRKAA 1663

Query: 540  ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQ 596
            +N          V++            +G     +K      +K        +  + + Q
Sbjct: 1664 QNSGEAEYIEKVVYTVKQSAEDVKKTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQ 1723

Query: 597  MMNKDLLD------SVIAYLKSQY 614
               K LL        ++  L+ +Y
Sbjct: 1724 NEAKTLLAQANSKLQLLKDLERKY 1747


>gi|167614504|ref|NP_002282.2| laminin subunit beta-1 precursor [Homo sapiens]
 gi|317373377|sp|P07942|LAMB1_HUMAN RecName: Full=Laminin subunit beta-1; AltName: Full=Laminin B1 chain;
            AltName: Full=Laminin-1 subunit beta; AltName:
            Full=Laminin-10 subunit beta; AltName: Full=Laminin-12
            subunit beta; AltName: Full=Laminin-2 subunit beta;
            AltName: Full=Laminin-6 subunit beta; AltName:
            Full=Laminin-8 subunit beta; Flags: Precursor
 gi|51095145|gb|EAL24388.1| laminin, beta 1 [Homo sapiens]
 gi|109731041|gb|AAI13456.1| Laminin, beta 1 [Homo sapiens]
 gi|119603830|gb|EAW83424.1| laminin, beta 1, isoform CRA_b [Homo sapiens]
          Length = 1786

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 69/564 (12%), Positives = 167/564 (29%), Gaps = 106/564 (18%)

Query: 113  GRVWGEIARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
              +   +A+SP         N F                ++ I   T+M++   V     
Sbjct: 1228 SEIKDILAQSPAAEPLKNIGNLFEEA-------------EKLIKDVTEMMA--QVEVKLS 1272

Query: 170  GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNY 224
                 SN    +      E  S+D  V            S+       +T++F+    + 
Sbjct: 1273 DTTSQSNSTAKELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITKYFQM---SL 1329

Query: 225  RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             A E    S    + +   ++  +  D ++    + + ++   +      L        D
Sbjct: 1330 EAEERVNASTT--EPNSTVEQSALMRDRVEDVMMERESQFKEKQEEQARLL--------D 1379

Query: 285  EAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS------------------------- 314
            E    L+        AE       G S S+   G                          
Sbjct: 1380 ELAGKLQS-LDLSAAAEMTCGTPPGASCSETECGGPNCRTDEGERKCGGPGCGGLVTVAH 1438

Query: 315  --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              + K    D    D + +LA+    + ++  +           K S       +K +  
Sbjct: 1439 NAWQKAMDLDQ---DVLSALAEVEQLSKMVSEAK----LRADEAKQSAEDIL--LKTNAT 1489

Query: 373  NQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEV 430
             + ++ K++E+++   K++  FL      +D I +   +++ +++P      +++     
Sbjct: 1490 KE-KMDKSNEELRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIR 1548

Query: 431  AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
              +    Q+   +      +++   + L +         +     D     V   +++  
Sbjct: 1549 ERVESLSQVEVILQHSAADIARAEML-LEEAKRASKSATDVKVTADM----VKEALEEAE 1603

Query: 491  KTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            K    AE+   +A++           +  E +   +   +  + +        ++ R   
Sbjct: 1604 KAQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELKRKAA 1663

Query: 540  ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQ 596
            +N          V++            +G     +K      +K        +  + + Q
Sbjct: 1664 QNSGEAEYIEKVVYTVKQSAEDVKKTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQ 1723

Query: 597  MMNKDLLD------SVIAYLKSQY 614
               K LL        ++  L+ +Y
Sbjct: 1724 NEAKTLLAQANSKLQLLKDLERKY 1747


>gi|94969273|ref|YP_591321.1| hypothetical protein Acid345_2246 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551323|gb|ABF41247.1| hypothetical protein Acid345_2246 [Candidatus Koribacter versatilis
           Ellin345]
          Length = 326

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 72/205 (35%), Gaps = 35/205 (17%)

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
           + + +++  ++++        +   A +  ++  +  +Y++ E+++I             
Sbjct: 133 FSQLQALQNLLISQSIKKDADNVPQADVEAYYNAHIGDYQSGEFQKIIV----PATVSDN 188

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
           ++    +L A+ +K       P     E +    ++   +  +   + + F  +AE    
Sbjct: 189 VD-ERTKLAADLQKRCVAGEDPAKLQAE-IDDKAKRTPTKLVELKNQHQNFYPVAEHP-- 244

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                                  IF L K G  + VI       I  V+ IK   T    
Sbjct: 245 -----------------------IFDL-KPGQCSAVIPEQQDLAIYKVTAIK---TTPIA 277

Query: 366 EVKKDIANQMRITKASEKVKEDYKR 390
           +VK  I   ++ ++  +++ +   +
Sbjct: 278 DVKDQIVKSLQTSRMKDEIAKIKSQ 302


>gi|332705576|ref|ZP_08425652.1| hypothetical protein LYNGBM3L_11830 [Lyngbya majuscula 3L]
 gi|332355368|gb|EGJ34832.1| hypothetical protein LYNGBM3L_11830 [Lyngbya majuscula 3L]
          Length = 260

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 47/131 (35%), Gaps = 10/131 (7%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS 308
           + +++  + +N+  +   +   + Q++  N+K + E F  +++ +  F Q A        
Sbjct: 105 DKDVEKFFGQNRLDF---DQILLYQIIVANEKLSKELFYQIEEKEISFYQAAHIYDIDEQ 161

Query: 309 DISLGSFSKE---YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS-- 363
                 F  +   +     +A  +F +   G     +    GY I  V    P+      
Sbjct: 162 RRQKCGFEGKLYRWNLRPDIAAIVFGVP-IGQVVNPVKTPQGYHILMVERFIPAELTPER 220

Query: 364 FQEVKKDIANQ 374
           + E+   +   
Sbjct: 221 YDEILDRLFQD 231


>gi|51557610|gb|AAU06445.1| surface antigen [Rickettsia sp. A-167]
          Length = 1650

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 97/286 (33%), Gaps = 25/286 (8%)

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS--IDLPL 417
            T + +   ++I  +++I +  +K+K+  K L         + +   +  I++  + +  
Sbjct: 333 TTETLKSRAEEIETKIKIGENKDKIKKLEKELTSKNNKADRLFQKIEKIDILANKVSIKS 392

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
            +         EV+A   ++  +          +K        G     +   +   R++
Sbjct: 393 QETVPVTTASTEVSAFQAQQARINEARQGVFNKNKSS------GGNA--RKSSAGTKREK 444

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
           K +E    + +  K  K  +  S KA ++     KE  +   +          + Q+N++
Sbjct: 445 KKQEAQKQLSEIKKQEKAIKTASDKAKEVAASAKKE-TSRTALRAMQDKMNGDSEQLNKI 503

Query: 538 DNENKFFGYDG----ISQVFSGPVEMVKCFPIENGLSYVV----------FKVTNSKVGP 583
           +   K    D         +    +     P+ +G+  ++                +  P
Sbjct: 504 EENLKLLTPDVYNSSTGPTYKQSPKAKPTIPLSHGVQRILGEQPEDEEGYLVPIKVQQQP 563

Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
            QE +  I   ++ + +  +   I YL S      +   I   +DG
Sbjct: 564 YQEIEDPIPSHSKDIYEAKVSQYINYLNSIQPNQSNQAQIDSVIDG 609


>gi|113475078|ref|YP_721139.1| hypothetical protein Tery_1353 [Trichodesmium erythraeum IMS101]
 gi|110166126|gb|ABG50666.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 251

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 70/234 (29%), Gaps = 22/234 (9%)

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
               L    + G+ +     S    ++ K    E     Y + N                
Sbjct: 22  QRYQLMPHFLRGVIIDEAIASLTCTEKEKTTALEKFETQYQLNNPEAK-----------Q 70

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
            W    K      E       +  V  ++ K +   ++++  +   K      +      
Sbjct: 71  AWL---KSQNMTQEQLE-EMAIRPVLLEKFKQQTWKNQVERYFLTRKSSL---DQVVYSL 123

Query: 275 LVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV-SLADSIFSL 332
           +   N   A E +  + ++ + F ++A E  +     + G      +         I S+
Sbjct: 124 IRTKNPGLAHELYFRIVEEEQTFAEVAREYSEGPEGRTGGLLGPVPLIQPHPSISKILSV 183

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           ++ G        +   VI  +    P+       +++ + +++      E++ +
Sbjct: 184 SQPGQIWAPRPLTEWTVIIRLEKFIPAQLD--DSMRRRLMDELLENWIREQIGK 235


>gi|225375823|ref|ZP_03753044.1| hypothetical protein ROSEINA2194_01455 [Roseburia inulinivorans DSM
           16841]
 gi|225212258|gb|EEG94612.1| hypothetical protein ROSEINA2194_01455 [Roseburia inulinivorans DSM
           16841]
          Length = 367

 Score = 41.5 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 75/223 (33%), Gaps = 19/223 (8%)

Query: 185 FYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI-------L 236
           +  +N   DY + L +     IA+ +   +    +K  +   A E     Y+        
Sbjct: 96  YILQNHMADYDVTLTDDETAKIAETAAQFMADNDDKAVNALGATEDIVKEYLTLVTVQSK 155

Query: 237 FDVHEKEK-KIEISNDELQ----AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ--S 289
                       +S+ +      +    +K  Y   +  T E       + AD   +   
Sbjct: 156 MRAAIIADADTNVSDADANTSAYSYVNVSKTSYKDADGNTQEYTDDEKAELADTVQKFHD 215

Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
                     A+E G ++S  +    S     D  + +++  L  +G+ + V+     Y 
Sbjct: 216 AAADTTLDTAADEYGYTVSTGT--FSSDNTTLDEEVLNALEGLKSEGELSDVVETDNYYY 273

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           +  +  I  +     +E +++I +Q +    +E ++      E
Sbjct: 274 VLRLDEITDADAT--EEHRQEIISQRQSDLYNEVLQGWKDEAE 314


>gi|330722308|gb|EGH00175.1| Cell division trigger factor [gamma proteobacterium IMCC2047]
          Length = 332

 Score = 41.5 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 47  GRQKVPFSS--FINSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQF 102
           G  ++   S        Q    + Q+ G    ++     +     + +  + SG  ++Q+
Sbjct: 184 GAHEIAVPSALVDQEIDQIRNEMVQQFGGGQQIDPSMFPADMFKDRAVQRVASGLLINQY 243

Query: 103 IEDIGLEADHGRVWGEIAR 121
           + D  L A   +V   I  
Sbjct: 244 VRDNQLSASDEQVRAAIEN 262


>gi|332868295|ref|XP_001165667.2| PREDICTED: laminin subunit beta-1 isoform 6 [Pan troglodytes]
          Length = 1786

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 69/564 (12%), Positives = 167/564 (29%), Gaps = 106/564 (18%)

Query: 113  GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI---NEKEYIDHYTKMLSRTDVVGMFV 169
              +   +A+SP                 L   G      ++ I   T+M++   V     
Sbjct: 1228 SEIKDILAQSPA-------------AEPLKNIGYLFEEAEKLIKDVTEMMA--QVEVKLS 1272

Query: 170  GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNY 224
                 SN    +      E  S+D  V            S+       +T++F+    + 
Sbjct: 1273 DTTSQSNSTAKELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITKYFQM---SL 1329

Query: 225  RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             A E    S    + +   ++  +  D ++    + + ++   +      L        D
Sbjct: 1330 EAEERVNASTT--EPNSTVEQSALMRDRVEDVMMERESQFKEKQEEQARLL--------D 1379

Query: 285  EAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS------------------------- 314
            E    L+        AE       G S S+   G                          
Sbjct: 1380 ELAGKLQS-LDLSAAAEMTCGTPPGASCSETECGGPNCRTDEGEKKCGGPGCGGLVTVAH 1438

Query: 315  --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              + K    D    D + +LA+    + ++  +           K S       +K +  
Sbjct: 1439 NAWQKAMDLDQ---DVLSALAEVEQLSKMVSEAK----LRADEAKQSAEDIL--LKTNAT 1489

Query: 373  NQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEV 430
             + ++ K++E+++   K++  FL      +D I +   +++ +++P      +++     
Sbjct: 1490 KE-KMDKSNEELRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIR 1548

Query: 431  AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
              +    Q+   +      +++   + L +         +     D     V   +++  
Sbjct: 1549 ERVESLSQVEVILQHSAADIARAEML-LEEAKRASKSATDVKVTADM----VKEALEEAE 1603

Query: 491  KTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            K    AE+   +A++           +  E +   +   +  + +        ++ R   
Sbjct: 1604 KAQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELTRKAA 1663

Query: 540  ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQ 596
            +N          V++            +G     +K      +K        +  + + Q
Sbjct: 1664 QNSGEAEYIEKVVYTVKQSAEDVKKTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQ 1723

Query: 597  MMNKDLLD------SVIAYLKSQY 614
               K LL        ++  L+ +Y
Sbjct: 1724 NEAKTLLAQANSKLQLLKDLERKY 1747


>gi|114615462|ref|XP_001165567.1| PREDICTED: laminin subunit beta-1 isoform 3 [Pan troglodytes]
          Length = 1808

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 69/564 (12%), Positives = 167/564 (29%), Gaps = 106/564 (18%)

Query: 113  GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI---NEKEYIDHYTKMLSRTDVVGMFV 169
              +   +A+SP                 L   G      ++ I   T+M++   V     
Sbjct: 1250 SEIKDILAQSPA-------------AEPLKNIGYLFEEAEKLIKDVTEMMA--QVEVKLS 1294

Query: 170  GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNY 224
                 SN    +      E  S+D  V            S+       +T++F+    + 
Sbjct: 1295 DTTSQSNSTAKELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITKYFQM---SL 1351

Query: 225  RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             A E    S    + +   ++  +  D ++    + + ++   +      L        D
Sbjct: 1352 EAEERVNASTT--EPNSTVEQSALMRDRVEDVMMERESQFKEKQEEQARLL--------D 1401

Query: 285  EAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS------------------------- 314
            E    L+        AE       G S S+   G                          
Sbjct: 1402 ELAGKLQS-LDLSAAAEMTCGTPPGASCSETECGGPNCRTDEGEKKCGGPGCGGLVTVAH 1460

Query: 315  --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              + K    D    D + +LA+    + ++  +           K S       +K +  
Sbjct: 1461 NAWQKAMDLDQ---DVLSALAEVEQLSKMVSEAK----LRADEAKQSAEDIL--LKTNAT 1511

Query: 373  NQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEV 430
             + ++ K++E+++   K++  FL      +D I +   +++ +++P      +++     
Sbjct: 1512 KE-KMDKSNEELRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIR 1570

Query: 431  AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
              +    Q+   +      +++   + L +         +     D     V   +++  
Sbjct: 1571 ERVESLSQVEVILQHSAADIARAEML-LEEAKRASKSATDVKVTADM----VKEALEEAE 1625

Query: 491  KTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            K    AE+   +A++           +  E +   +   +  + +        ++ R   
Sbjct: 1626 KAQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELTRKAA 1685

Query: 540  ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQ 596
            +N          V++            +G     +K      +K        +  + + Q
Sbjct: 1686 QNSGEAEYIEKVVYTVKQSAEDVKKTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQ 1745

Query: 597  MMNKDLLD------SVIAYLKSQY 614
               K LL        ++  L+ +Y
Sbjct: 1746 NEAKTLLAQANSKLQLLKDLERKY 1769


>gi|114615458|ref|XP_001165635.1| PREDICTED: laminin, beta 1 isoform 5 [Pan troglodytes]
          Length = 1786

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 69/564 (12%), Positives = 167/564 (29%), Gaps = 106/564 (18%)

Query: 113  GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI---NEKEYIDHYTKMLSRTDVVGMFV 169
              +   +A+SP                 L   G      ++ I   T+M++   V     
Sbjct: 1228 SEIKDILAQSPA-------------AEPLKNIGYLFEEAEKLIKDVTEMMA--QVEVKLS 1272

Query: 170  GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNY 224
                 SN    +      E  S+D  V            S+       +T++F+    + 
Sbjct: 1273 DTTSQSNSTAKELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITKYFQM---SL 1329

Query: 225  RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             A E    S    + +   ++  +  D ++    + + ++   +      L        D
Sbjct: 1330 EAEERVNASTT--EPNSTVEQSALMRDRVEDVMMERESQFKEKQEEQARLL--------D 1379

Query: 285  EAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS------------------------- 314
            E    L+        AE       G S S+   G                          
Sbjct: 1380 ELAGKLQS-LDLSAAAEMTCGTPPGASCSETECGGPNCRTDEGEKKCGGPGCGGLVTVAH 1438

Query: 315  --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              + K    D    D + +LA+    + ++  +           K S       +K +  
Sbjct: 1439 NAWQKAMDLDQ---DVLSALAEVEQLSKMVSEAK----LRADEAKQSAEDIL--LKTNAT 1489

Query: 373  NQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEV 430
             + ++ K++E+++   K++  FL      +D I +   +++ +++P      +++     
Sbjct: 1490 KE-KMDKSNEELRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIR 1548

Query: 431  AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
              +    Q+   +      +++   + L +         +     D     V   +++  
Sbjct: 1549 ERVESLSQVEVILQHSAADIARAEML-LEEAKRASKSATDVKVTADM----VKEALEEAE 1603

Query: 491  KTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            K    AE+   +A++           +  E +   +   +  + +        ++ R   
Sbjct: 1604 KAQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELTRKAA 1663

Query: 540  ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQ 596
            +N          V++            +G     +K      +K        +  + + Q
Sbjct: 1664 QNSGEAEYIEKVVYTVKQSAEDVKKTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQ 1723

Query: 597  MMNKDLLD------SVIAYLKSQY 614
               K LL        ++  L+ +Y
Sbjct: 1724 NEAKTLLAQANSKLQLLKDLERKY 1747


>gi|114615456|ref|XP_001165596.1| PREDICTED: laminin, beta 1 isoform 4 [Pan troglodytes]
          Length = 1872

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 69/564 (12%), Positives = 167/564 (29%), Gaps = 106/564 (18%)

Query: 113  GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI---NEKEYIDHYTKMLSRTDVVGMFV 169
              +   +A+SP                 L   G      ++ I   T+M++   V     
Sbjct: 1314 SEIKDILAQSPA-------------AEPLKNIGYLFEEAEKLIKDVTEMMA--QVEVKLS 1358

Query: 170  GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNY 224
                 SN    +      E  S+D  V            S+       +T++F+    + 
Sbjct: 1359 DTTSQSNSTAKELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITKYFQM---SL 1415

Query: 225  RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             A E    S    + +   ++  +  D ++    + + ++   +      L        D
Sbjct: 1416 EAEERVNASTT--EPNSTVEQSALMRDRVEDVMMERESQFKEKQEEQARLL--------D 1465

Query: 285  EAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS------------------------- 314
            E    L+        AE       G S S+   G                          
Sbjct: 1466 ELAGKLQS-LDLSAAAEMTCGTPPGASCSETECGGPNCRTDEGEKKCGGPGCGGLVTVAH 1524

Query: 315  --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              + K    D    D + +LA+    + ++  +           K S       +K +  
Sbjct: 1525 NAWQKAMDLDQ---DVLSALAEVEQLSKMVSEAK----LRADEAKQSAEDIL--LKTNAT 1575

Query: 373  NQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEV 430
             + ++ K++E+++   K++  FL      +D I +   +++ +++P      +++     
Sbjct: 1576 KE-KMDKSNEELRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIR 1634

Query: 431  AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
              +    Q+   +      +++   + L +         +     D     V   +++  
Sbjct: 1635 ERVESLSQVEVILQHSAADIARAEML-LEEAKRASKSATDVKVTADM----VKEALEEAE 1689

Query: 491  KTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            K    AE+   +A++           +  E +   +   +  + +        ++ R   
Sbjct: 1690 KAQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELTRKAA 1749

Query: 540  ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQ 596
            +N          V++            +G     +K      +K        +  + + Q
Sbjct: 1750 QNSGEAEYIEKVVYTVKQSAEDVKKTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQ 1809

Query: 597  MMNKDLLD------SVIAYLKSQY 614
               K LL        ++  L+ +Y
Sbjct: 1810 NEAKTLLAQANSKLQLLKDLERKY 1833


>gi|332216443|ref|XP_003257361.1| PREDICTED: laminin subunit beta-2 [Nomascus leucogenys]
          Length = 1678

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 82/274 (29%), Gaps = 34/274 (12%)

Query: 376  RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
            R+ +   +  E ++R +  L    +      + +  + +L  +  + KD   +E A    
Sbjct: 1356 RVAETRRQASEAHQRAQAALDKANASR---GQVEQANQELRELIQSVKDFLNQEGADPDS 1412

Query: 436  KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
             E +  RV     P S +    L            +I  R R L +V   + +    V+ 
Sbjct: 1413 IEMVATRVLELSIPASAEQIQYLA----------GAIAERVRSLADVDAILARTVGDVRR 1462

Query: 496  AEEV---SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
            AE++   + +A     +  ++ +  +   +    +        R    +       + QV
Sbjct: 1463 AEQLLQDARRARSRAEDEKQKAEIVQAALEEAQRAQGVAEGAIRGAVADTRDTEQTLYQV 1522

Query: 553  FSGPVEMVKCFPIENGLSYVVFKVTNS-----------------KVGPVQEKDKFISYLT 595
                    +        +  +  +  +                   G  Q + +    L 
Sbjct: 1523 QERMAGAEQALSSAGERARQLDALLEALRLKWAGNSLAASTAEETAGSAQGRAQEAEQLL 1582

Query: 596  QMMNKDLLDSVIAYLKSQY-SVTVHDNLIQRYLD 628
            +    D   +V A  + +   V       ++  D
Sbjct: 1583 RGPLGDQYQTVKALAERKAQGVLAAQARAEQLRD 1616


>gi|218777909|ref|YP_002429227.1| hypothetical protein Dalk_0049 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759293|gb|ACL01759.1| hypothetical protein Dalk_0049 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 280

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 60/205 (29%), Gaps = 35/205 (17%)

Query: 9   SRTWVAKIFL-----VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
             + VA + L     V+L   FL  G  +          +  VG   +    F   ++  
Sbjct: 7   KNSRVASVILTGALAVLLVGVFLFSGCGE--REQVRDDALARVGETVLKLPEFNELFELA 64

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW---GEIA 120
               S   G    + R  +    ++ L+ LV    + ++    GL      +     EI 
Sbjct: 65  EAGFS-GYGLGYTANRKET---RRQFLNQLVEEMFVLEYARVNGLVLTPEALQKAEQEIW 120

Query: 121 RSPLFHGKDN--------------------KFSHDVFVSRLAREGINEKEYIDHY-TKML 159
           R   F   D+                        + F S L  + +  + +      ++L
Sbjct: 121 RDYTFVNPDDPILGKIKAGEEQEQAEPQELSEPPEAFTSVLRDQALTFQLWEKGLARRLL 180

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKR 184
               +     G ++ S   ++    
Sbjct: 181 LEQAISRELDGRVQVSEEEIEAYLA 205


>gi|194397602|ref|YP_002037615.1| foldase protein PrsA [Streptococcus pneumoniae G54]
 gi|194357269|gb|ACF55717.1| foldase protein PrsA [Streptococcus pneumoniae G54]
          Length = 219

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 8/118 (6%)

Query: 203 PAIADPSNAVLTQWFEKYKDN-----YRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
               D + A   + + +             E ++       + E   K     +     Y
Sbjct: 76  DKEVDDTIAEEKKQYGENYQRVLSQAGMTLETRKAQIRTSKLVELAVKKVAEAELTDEAY 135

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGS 314
           +K  ++Y      T + +   N+ +A E  +  K  G  F  LA++          G 
Sbjct: 136 KKAFDEYTPD--VTAQIIRLNNEDKAKEVLEKAKAVGADFALLAKDNSTDEKTKENGG 191


>gi|99080787|ref|YP_612941.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040]
 gi|99037067|gb|ABF63679.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040]
          Length = 424

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 17/143 (11%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           S  ++V    +                      V+ S +       +   D+L+      
Sbjct: 46  SPAITVNEDVITTYELEQ---------RALFLSVLGSVQGDPF---ETARDDLIEDRLKR 93

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           Q ++D+GL      V   +        +    + + F++ L + G+  +   D  T  L 
Sbjct: 94  QVMKDVGLTLSEEEVTEGMREL----AQRANLTLEEFLASLNQAGVAPETVRDFTTAGLG 149

Query: 161 -RTDVVGMFVGGMRPSNLLLDQA 182
            R  V G F+   RPS   +D+A
Sbjct: 150 WREYVRGRFLSQARPSEAEIDRA 172


>gi|311264748|ref|XP_003130317.1| PREDICTED: laminin subunit beta-1 [Sus scrofa]
          Length = 1751

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 62/534 (11%), Positives = 160/534 (29%), Gaps = 92/534 (17%)

Query: 152  IDHYTKMLS--RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
             +  TK ++     V G        SN    +      E  S++  V            S
Sbjct: 1218 AEKLTKDVTEKMAQVEGKLSDAALQSNSTARELDSLQAEAESLENTVKELAEQLEFIKNS 1277

Query: 210  N-----AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
            +       +T++F+    +  A E    S    D +   ++  +  D ++    + + ++
Sbjct: 1278 DIRGALDSITKYFQM---SLEAEERVNASTT--DSNSTVEQSALIRDRVEDLMLEQESQF 1332

Query: 265  FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS----- 314
               +      L        DE    L+        AE       G S S+   G      
Sbjct: 1333 RDKQEEQARLL--------DELAGKLQS-LDLSTAAELTCGTPPGASCSETECGGPNCRT 1383

Query: 315  ----------------------FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                                  + K    D    D + +LA+    + ++  +       
Sbjct: 1384 DEGQKKCGGPGCGGLVTVAHSAWQKAMDFDQ---DVLSALAEVEQLSKMVSEAK----LR 1436

Query: 353  VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKI 410
                K +       +K +   + ++ K++E ++   K++ +FL      +D I +   ++
Sbjct: 1437 ADEAKQNAQDVL--LKANATKE-KVDKSNEDLRNLIKQIRDFLTQDSADLDSIEAVANEV 1493

Query: 411  VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
            + +++P      +++       +    Q+   +      +++   + L +         +
Sbjct: 1494 LKMEMPSTPQQLQNLTEDIRERVESLSQVEVILQQSAADIARAELL-LEEAQRASKSATD 1552

Query: 471  SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRD 519
                 D     V   +++  K    AE+   +A++           +  E +   +   +
Sbjct: 1553 VKVTADM----VKEALEEAEKAQIAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFN 1608

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN- 578
              + +        ++ R   +N          V++            +G     +K    
Sbjct: 1609 ASQRISELERNVEELKRKAAQNSGEAEYIEKVVYAVKQSADDVKKTLDGELEEKYKKVEN 1668

Query: 579  --SKVGPVQEKDKFISYLTQMMNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
              ++        +  + + Q   K LL        ++  L+ +Y    +   ++
Sbjct: 1669 LIAQKTEESADARRKAEMLQNEAKTLLAQANSKLQLLKDLERKY--EDNQKYLE 1720


>gi|302808083|ref|XP_002985736.1| hypothetical protein SELMODRAFT_424697 [Selaginella moellendorffii]
 gi|300146645|gb|EFJ13314.1| hypothetical protein SELMODRAFT_424697 [Selaginella moellendorffii]
          Length = 1299

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 15/97 (15%)

Query: 109 EADHGRVWGEIARSPLFHGKDNKFS--HDVFVSRL----------AREGINEKEYIDHYT 156
                 +   IA+ P FH    +    H +F   +           + G++E +Y D + 
Sbjct: 811 STSDEEMLDAIAKHPEFHWAGGEIFLRHVLFNQAMPHWQDWESLFLKLGLSEAQYEDVFC 870

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
               +  +  +    +     +L+    ++ E R + 
Sbjct: 871 DNTIQQLLAEV---SINVPPSILESTIAWFIEKRDLR 904


>gi|240144319|ref|ZP_04742920.1| ABC transporter, permease protein [Roseburia intestinalis L1-82]
 gi|257203662|gb|EEV01947.1| ABC transporter, permease protein [Roseburia intestinalis L1-82]
          Length = 1034

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 73/219 (33%), Gaps = 6/219 (2%)

Query: 362 VSFQEVKKDIAN-QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
              ++ K  I + + ++  A +K++     LE+  A   +  E + +EK   +D   V  
Sbjct: 279 KQLEDAKSQIEDGEKQLADAKKKLEYAPDELEKKEAE-LTEAEKAIQEKETQLDQAEVAL 337

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
                +G           +   +F ++         +   G  +     +   A+ + + 
Sbjct: 338 GIGYAQGVGQIQKALNG-ISEGLFSENGDQGNGAAGSFSSGDALADAGSQIADAKAQ-IA 395

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           +    + +  K +++ +   +KA + + E   +        +   A     +     ++ 
Sbjct: 396 DGRAQIAEAQKQIESGKSAIAKAKKQLEESKTQ--IAEKEAELSDAKTQYEDGKKEYEDG 453

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
              +  +                 +++  +YV+ + TN 
Sbjct: 454 LSTYNEEIEKAEKKISDGEKTLKELKDPDTYVLGRDTNV 492


>gi|86157841|ref|YP_464626.1| HNH endonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774352|gb|ABC81189.1| HNH endonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 582

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 53/161 (32%), Gaps = 3/161 (1%)

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
            +  +  V     +    E A +     L   V                D    WV+++ 
Sbjct: 143 AAETILPVAVGDAEAAWVERAGVETVRTLEAAVRAAPARGDAPGDAFDGDDDEAWVELRT 202

Query: 471 SIPARD-RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
            +P  + R L+E L+  ++        E++ + A + + E    G    D  + LG    
Sbjct: 203 QLPPDERRVLDEALSLARELEPGSSRIEQLEALAQEYLAE--HPGDPDADDARPLGPGFR 260

Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS 570
                +         G DG +++   P        +++G++
Sbjct: 261 ARGPESTRRGATASLGPDGWAELPEVPALAAPDLSLDDGVT 301


>gi|291540791|emb|CBL13902.1| Predicted permease [Roseburia intestinalis XB6B4]
          Length = 1034

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 73/219 (33%), Gaps = 6/219 (2%)

Query: 362 VSFQEVKKDIAN-QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
              ++ K  I + + ++  A +K++     LE+  A   +  E + +EK   +D   V  
Sbjct: 279 KQLEDAKSQIEDGEKQLADAKKKLEYAPDELEKKEAE-LTEAEKAIQEKETQLDQAEVAL 337

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
                +G           +   +F ++         +   G  +     +   A+ + + 
Sbjct: 338 GIGYAQGVGQIQKALNG-ISEGLFSENGDQGNGAAGSFSSGDALADAGSQIADAKAQ-IA 395

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           +    + +  K +++ +   +KA + + E   +        +   A     +     ++ 
Sbjct: 396 DGRAQIAEAQKQIESGKSAIAKAKKQLEESKTQ--IAEKEAELSDAKTQYEDGKKEYEDG 453

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
              +  +                 +++  +YV+ + TN 
Sbjct: 454 LSTYNEEIEKAEKKISDGEKTLKELKDPDTYVLGRDTNV 492


>gi|114615464|ref|XP_001165530.1| PREDICTED: laminin, beta 1 isoform 2 [Pan troglodytes]
          Length = 1754

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 68/555 (12%), Positives = 164/555 (29%), Gaps = 100/555 (18%)

Query: 113  GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI---NEKEYIDHYTKMLSRTDVVGMFV 169
              +   +A+SP                 L   G      ++ I   T+M++   V     
Sbjct: 1228 SEIKDILAQSPA-------------AEPLKNIGYLFEEAEKLIKDVTEMMA--QVEVKLS 1272

Query: 170  GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNY 224
                 SN    +      E  S+D  V            S+       +T++F+    + 
Sbjct: 1273 DTTSQSNSTAKELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITKYFQM---SL 1329

Query: 225  RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             A E    S    + +   ++  +  D ++    + + ++   +      L        D
Sbjct: 1330 EAEERVNASTT--EPNSTVEQSALMRDRVEDVMMERESQFKEKQEEQARLL--------D 1379

Query: 285  EAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS------------------------- 314
            E    L+        AE       G S S+   G                          
Sbjct: 1380 ELAGKLQS-LDLSAAAEMTCGTPPGASCSETECGGPNCRTDEGEKKCGGPGCGGLVTVAH 1438

Query: 315  --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              + K    D    D + +LA+    + ++  +           K S       +K +  
Sbjct: 1439 NAWQKAMDLDQ---DVLSALAEVEQLSKMVSEAK----LRADEAKQSAEDIL--LKTNAT 1489

Query: 373  NQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEV 430
             + ++ K++E+++   K++  FL      +D I +   +++ +++P      +++     
Sbjct: 1490 KE-KMDKSNEELRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIR 1548

Query: 431  AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
              +    Q+   +      +++   + L +         +     D     V   +++  
Sbjct: 1549 ERVESLSQVEVILQHSAADIARAEML-LEEAKRASKSATDVKVTADM----VKEALEEAE 1603

Query: 491  KTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            K    AE+   +A++           +  E +   +   +  + +        ++ R   
Sbjct: 1604 KAQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELTRKAA 1663

Query: 540  ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQ 596
            +N          V++            +G     +K      +K        +  + + Q
Sbjct: 1664 QNSGEAEYIEKVVYTVKQSAEDVKKTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQ 1723

Query: 597  MMNKDLLDSVIAYLK 611
               K LL    + L+
Sbjct: 1724 NEAKTLLAQANSKLQ 1738


>gi|312792461|ref|YP_004025384.1| hypothetical protein Calkr_0200 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179601|gb|ADQ39771.1| hypothetical protein Calkr_0200 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 236

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 58/212 (27%), Gaps = 34/212 (16%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINS--WKQELGMISQKIGFVVNSERARSV--GLDKKILDN 92
            + S+ +  V    +       +  +++       K+G +       +      K++LD 
Sbjct: 48  SNNSNIIAKVDGIPIYKKDLDIAELYEKLRFNNQAKLGAITKQNTLVTPYQKTKKELLDE 107

Query: 93  LVSGATLDQFIEDIGLEADHGR-------VWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
           LV    L +  +  G              V   I        K +  S       L    
Sbjct: 108 LVERKVLVESAKKEGYFVSKEEAEAYFNNVKTTIDDVISGKIKGDIESAKQAKELL---- 163

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
                Y    ++      V+G +   +  S  L  +A  +  E+                
Sbjct: 164 ---DLYKTQLSENEFNEKVIGAYQEILTISKYLKAKADEYIKEH---------------- 204

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            + S   + ++   +K+  +A     I     
Sbjct: 205 PNASTEEIHKYINDFKNKVKANSKIEILTSEL 236


>gi|332840735|ref|XP_003314052.1| PREDICTED: huntingtin-interacting protein 1-related protein [Pan
           troglodytes]
          Length = 1112

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/266 (10%), Positives = 72/266 (27%), Gaps = 26/266 (9%)

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI-SRREKI 410
            +   +     +  +  + + +++   +A++   E  + L E      S  E    + K 
Sbjct: 445 ELEEQRKQKQKALVD-NEQLRHELAQLRAAQLEGERSQGLREEAERKASATEARYNKLKE 503

Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
              +L  V              +  K+Q                         +  Q+++
Sbjct: 504 KHSELVHVHAELLRKNADTAKQLTLKKQ--------------SQEEVARVKDLLAFQVEQ 549

Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                + KLEE    ++K  + ++      ++A + +    +           L A    
Sbjct: 550 VKRESELKLEEQSDQLEKLKRELEAKAGELARAQEALSHTEQSKSELSSRLDTLSAEKDA 609

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
            +   R    +       + +  +      +    E G             G + E++  
Sbjct: 610 LSGAVRQREADLLAAQSLVRETEAALSREQQRSSQEQGELQ----------GQLAERESQ 659

Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSV 616
              L Q +  +    +         +
Sbjct: 660 EQGLRQRLLDEQFAVLRGAAAEAAGI 685


>gi|302783795|ref|XP_002973670.1| hypothetical protein SELMODRAFT_99510 [Selaginella moellendorffii]
 gi|300158708|gb|EFJ25330.1| hypothetical protein SELMODRAFT_99510 [Selaginella moellendorffii]
          Length = 253

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 18/136 (13%)

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKK-----GKKFIQLAEEQG---KSLSDISLGSFS 316
                  V+ L+   +++  +    L+K           LA E        +   LG  S
Sbjct: 42  NQDREILVQHLLV--KEDQLQLLTELQKRLVQEDIDLSDLATEHSICPSKKNGGMLGWVS 99

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           K  +      ++ FS              FG+ +  V + + S      E++ +   ++ 
Sbjct: 100 KGRMV-PEFEEAAFSAPLNKIVRA--KTKFGWHLLQVLSERFSGF--LVEIQPE---ELA 151

Query: 377 ITKASEKVKEDYKRLE 392
                 + +E+ + L+
Sbjct: 152 KRMKDPEFRENAQLLD 167


>gi|239622662|ref|ZP_04665693.1| cell wall surface anchor family protein [Bifidobacterium longum
            subsp. infantis CCUG 52486]
 gi|239514659|gb|EEQ54526.1| cell wall surface anchor family protein [Bifidobacterium longum
            subsp. infantis CCUG 52486]
          Length = 1937

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 114/345 (33%), Gaps = 36/345 (10%)

Query: 195  IVLNNRHVPAIADPSNAV--LTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIE---I 248
            I L           ++A    T  ++  K ++ A E    +   +     +         
Sbjct: 1596 ITLTLADGTTKDVVTDAEFSTTTMWQ--KASFDAVENVTAVRLTVLSSAGQSDSQANKFA 1653

Query: 249  SNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL--AEEQGK 305
            S  EL+   ++  E+   +P+   +         +A+   +S    + +  L  A E  +
Sbjct: 1654 SAAELRLTTDREVEEETVAPDKTDLN----DTIAKANGLKESDYTAESWTALVKAREAAQ 1709

Query: 306  SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
            +++D    +     +   +L  +I  L K G+         G V  + ++++ +   + +
Sbjct: 1710 AVADNDKATAYDVALALTNLESAIAGLEKTGEEPGP-----GPVEVNKTDLQTAVNKASK 1764

Query: 366  EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
              K D         A E +K   + L+   A    +D      +     L        + 
Sbjct: 1765 LEKADYTTNSWEAFA-EALKAAQQVLDNKNATQQDVDTALSALQDAISKLEATAEPKPNP 1823

Query: 426  KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            +   V         + +    +  L  D +          ++      A  +K  EV  +
Sbjct: 1824 E-PGVVDKAALNATINKAAAINLGLYTDDSAN-------ALR------AALKKAREVSDN 1869

Query: 486  VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 K V  A E   KA   +++ +   K   ++  N GA+++T
Sbjct: 1870 SNATQKQVDAAREALEKAIAGLVKRTAA-KGDGNVVSNTGANVVT 1913


>gi|260807929|ref|XP_002598760.1| hypothetical protein BRAFLDRAFT_212895 [Branchiostoma floridae]
 gi|229284035|gb|EEN54772.1| hypothetical protein BRAFLDRAFT_212895 [Branchiostoma floridae]
          Length = 56

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 6/53 (11%)

Query: 310 ISLGSFSKEYIPDVSLADSIFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
             LG  ++  +      D+ F+L      K     P I    GY +  +   K
Sbjct: 4   GDLGWMTRGSMVGP-FQDAAFALQPSTTQKPVYTNPPIRTKHGYHVIMIEGKK 55


>gi|46580311|ref|YP_011119.1| hypothetical protein DVU1902 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449728|gb|AAS96378.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 312

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 55/156 (35%), Gaps = 4/156 (2%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            +R++   F       ++ IS +E+++ Y  ++ ++          +    ++  + A  
Sbjct: 126 RRRLALTKFAQVVLRSEVAISLEEVESWYRGHQGEFRLAARVRFIMVEGDTREGVEAAAG 185

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
           ++  G    ++ +       +  L    ++ IP  +      +  K G  +P I     +
Sbjct: 186 AVASGAAPEEVEKAFPGMSGNELL--IRRDRIP--AAWQKALAALKPGGVSPPIAFEGRW 241

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
           V   +    P+  +S  +    I  ++   K     
Sbjct: 242 VAFRLIESLPAQDMSVVDAYPVIERRLLEEKLDAAF 277


>gi|94986748|ref|YP_594681.1| parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730997|emb|CAJ54360.1| Parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 305

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 16/183 (8%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
              L + +    + +R    +R+++  F  H    K  +S+DE++  Y K+  ++F PE 
Sbjct: 118 EKSLQEEYLD-IETWRQLMKQRLTFQRFQHHILRPKFTLSSDEIEEYYFKHYSEFFIPEK 176

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI 329
             VE + +   +E + + Q   K K             +DI  G   +  +  +      
Sbjct: 177 --VEIIWY---QEVENSQQRKAKHKD---------CDRNDIEQGDIIRVALDRLPAKMRQ 222

Query: 330 FSLA-KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
             +  K G++TP       Y  A +    P+      E    I   +   K  +  ++  
Sbjct: 223 DLMKIKPGEYTPRHKEGEIYQYAFLRKRYPAHQADIIEAYSRIELILLEQKMEQAYEDWL 282

Query: 389 KRL 391
           +++
Sbjct: 283 EQV 285


>gi|296209973|ref|XP_002751793.1| PREDICTED: laminin subunit beta-1 [Callithrix jacchus]
          Length = 1788

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 34/320 (10%), Positives = 103/320 (32%), Gaps = 36/320 (11%)

Query: 327  DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            D + +LA+    + ++  +           K S       +K +   + ++ K++E ++ 
Sbjct: 1452 DVLSALAEVEQLSKMVSEAK----LRADEAKQSAEDIL--LKTNATKE-KMDKSNEDLRN 1504

Query: 387  DYKRLEEFL-ALGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
              K++  FL      +D I +   +++ +++P      +++       +    Q+   + 
Sbjct: 1505 LIKQIRNFLTEDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRERVESLSQVEVILQ 1564

Query: 445  GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
                 +++   + L +         +         + V   +++  K    AE+   +A+
Sbjct: 1565 QSAADIARAEML-LEEAKRASKSATDVKVTA----DTVKEALEEAEKAQVAAEKAIKQAD 1619

Query: 505  Q-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
            +           +  E +   +   +  + +         + R   +N          V+
Sbjct: 1620 EDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEDLKRKAAQNSGEAEYIEKVVY 1679

Query: 554  SGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLD------ 604
            S            +G     ++      +K        +  + + Q   K LL       
Sbjct: 1680 SVKQSAEDVKKTLDGELDEKYRKVENLIAKKTEESADARRKAEMLQNEAKTLLAQANSKL 1739

Query: 605  SVIAYLKSQYSVTVHDNLIQ 624
             ++  L+ +Y    +   ++
Sbjct: 1740 QLLKDLERKY--EDNQKYLE 1757


>gi|284052496|ref|ZP_06382706.1| hypothetical protein AplaP_13593 [Arthrospira platensis str.
           Paraca]
 gi|291568772|dbj|BAI91044.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 250

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 64/180 (35%), Gaps = 11/180 (6%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           S      W    K      E + I+     + + +++   +   +++ +   K      +
Sbjct: 65  SPEAQKAWLNLNK--LTLEEAQAIAERPIKIEKFKRERWTNK--VESYFITRKSSL---D 117

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYIPDVSLA- 326
                 +   N   A E +  + +G++ F + A E  +     + G      +     A 
Sbjct: 118 HVVYSLIRTKNPGLAHELYFRISEGEQEFSEAAREYSEGPESRTGGIMGPVSLAQPHPAI 177

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
             + ++++ G   P    S   VI  +    P+     + +++ + +++  T   E++ +
Sbjct: 178 SKLLAVSQPGQLWPPRPLSEWMVIIRLEKFIPAQLD--ESMRRHLIDELFETWLREEIAK 235


>gi|147815086|emb|CAN74567.1| hypothetical protein VITISV_015712 [Vitis vinifera]
          Length = 241

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 6/75 (8%)

Query: 289 SLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
            +  G     LA E            LG   K  +      ++ F               
Sbjct: 112 RISGGVDLSDLAVEYSICPSKEEGGMLGWVRKGQMV-PEFEEAAFXAPLNKVVR--CKTK 168

Query: 346 FGYVIAHVSNIKPSF 360
           FG+ +  V + +   
Sbjct: 169 FGWHLLQVISEREES 183


>gi|229824582|ref|ZP_04450651.1| hypothetical protein GCWU000282_01926 [Catonella morbi ATCC 51271]
 gi|229785953|gb|EEP22067.1| hypothetical protein GCWU000282_01926 [Catonella morbi ATCC 51271]
          Length = 3994

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 68/633 (10%), Positives = 180/633 (28%), Gaps = 89/633 (14%)

Query: 47   GRQKVPFSSFINSWKQELGMISQ--------KIGFVVNSERARSVGLDKKILDNLVSGA- 97
            G+       F  +       +++        +     + E+  +V    +     VS A 
Sbjct: 588  GKTPKSVKQFEAAKAAYAERLAELITQANAVQEDPNASQEQVDTVVAKVQAFQQEVSQAQ 647

Query: 98   -TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL-AREGINEKE----- 150
              L    +   L      +   +A  P    K  K S   +     A + + ++      
Sbjct: 648  ELLVDQTDKKVLNQTKADLDQLLASEPDLSNKTPK-SVAAYRQAKEAAQRLTQEAAQLLA 706

Query: 151  -YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
                   ++L   + +      +R +   +           S+          P     +
Sbjct: 707  NLDASPMEVLELNEQLNQAQEKLRTAETAIMAVAD----KESLRQAKQALAKKPDTTGKT 762

Query: 210  NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
               +  +  + +        + ++               S  E++A      +     E 
Sbjct: 763  PKSVAAYQAQVQAL-----ARELAQANDQAQAVLDDANASPAEVEA---ALAQVQAQQEK 814

Query: 270  RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE-QGKSLSDISLGSFSKEYIPDVSLADS 328
                  +  +Q       Q+++  +    LA+E +G + +  SL  + ++        + 
Sbjct: 815  LDQAAKLLKDQANKTALEQAIRTLET--DLAQEVEGSNKTPFSLALYRQKQEEARDALEQ 872

Query: 329  IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
               + +  D +P         +  V+  K +     Q  K+++ +Q       + +KE  
Sbjct: 873  ANRIVQDLDASP---QEVATAVEEVNQSKAA----LQHAKENLRDQAGKATLHKLLKEMV 925

Query: 389  KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
            K +        S+ E          ++      G  V   + A     ++ +  +    +
Sbjct: 926  KPISTEGKTPKSVQEYQTEYGRHRAEIDAALAKGAQVAEDKNATEAAVQEAISALEQALE 985

Query: 449  PLSKDHTVALPDGSYMWVQ---------------IKESIPARDRKLEEVLTDVKKDW--- 490
              S    + +       ++               + +  PA  R  +EVL + + +    
Sbjct: 986  RKSNSQLLLVNQVDKTALRAARQGLQDLLSQKPDLSDKTPASIRDYQEVLEEAETELDLL 1045

Query: 491  --------------------------KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
                                              ++ KA+++ LE +        I + +
Sbjct: 1046 SSLIEDPNTAENEMNDALAQSRTTATSLESAIAALTPKADKVALEQA-----LSQINQPI 1100

Query: 525  GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
              +  T N +   +   +         +      M+        +S  + ++  ++    
Sbjct: 1101 DLASKTPNSVTAFEEAKQANRASRDQAIQKAQDVMLDENVTPEAVSQALAELKAAQAKLD 1160

Query: 585  QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
            Q + K ++   +   K    ++   L++Q  +T
Sbjct: 1161 QARAKLVNQSDKSALKQARAALDTILQAQADLT 1193


>gi|302787911|ref|XP_002975725.1| hypothetical protein SELMODRAFT_103417 [Selaginella moellendorffii]
 gi|300156726|gb|EFJ23354.1| hypothetical protein SELMODRAFT_103417 [Selaginella moellendorffii]
          Length = 253

 Score = 41.1 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 18/136 (13%)

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKK-----GKKFIQLAEEQG---KSLSDISLGSFS 316
                  V+ L+   +++  +    L+K           LA E        +   LG  S
Sbjct: 42  NQDREILVQHLLV--KEDQLQLLTELQKRLVQEDIDLSDLATEHSICPSKKNGGMLGWVS 99

Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
           K  +      ++ FS              FG+ +  V + + S      E++ +   ++ 
Sbjct: 100 KGRMV-PEFEEAAFSAPLNKIVRA--KTKFGWHLLQVLSERFSGF--LVEIQPE---ELA 151

Query: 377 ITKASEKVKEDYKRLE 392
                 + +E+ + L+
Sbjct: 152 KRMKDPEFRENAQLLD 167


>gi|328882952|emb|CCA56191.1| putative lipoprotein [Streptomyces venezuelae ATCC 10712]
          Length = 214

 Score = 41.1 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 40/128 (31%), Gaps = 8/128 (6%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGATLD 100
               VG +++  SS     +        +      ++  ++ G L ++ L+ ++    +D
Sbjct: 31  AAAVVGGERIDVSSLQAQVEDVRA---AQERSPQAAQLVQATGDLPRRKLNGMIFDRVVD 87

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           +   D G+ A    +         F  +            L  +G+   +  D   + + 
Sbjct: 88  KVAADHGVTATRAELQQT---RTAFVRESGGEERLA-SVLLQEQGVAPGQIEDVVRRNVL 143

Query: 161 RTDVVGMF 168
              +    
Sbjct: 144 MNKIAAKL 151


>gi|301770389|ref|XP_002920595.1| PREDICTED: laminin subunit beta-2-like [Ailuropoda melanoleuca]
          Length = 1797

 Score = 41.1 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 83/294 (28%), Gaps = 44/294 (14%)

Query: 373  NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
              + + +A     E  + L E   + + + E  R+                  +G+   A
Sbjct: 1448 ADLALGRARHTQAELQRALAEGGGILSHVAETRRQAGEAQQRARAALDKANASRGQVEKA 1507

Query: 433  IPYKEQLLFRV--FGKDDPLSKDHTVALPDGSYMWVQIKES---------------IPAR 475
                 +L+  V  F   +    D          +  ++ E                I  R
Sbjct: 1508 NQELRELIQSVKDFLSQEGADPDSIEM------VATRVLELSIPASPEQIQHLAGEIAER 1561

Query: 476  DRKLEEVLT-------DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
             R L +V T       DV++  + ++ A    S+A     +         +  +  GA+ 
Sbjct: 1562 VRSLADVDTILARTVGDVRRAEQLLQDARRARSRAEGEKQKAETVQAALEEAQRAQGAAQ 1621

Query: 529  LTTNQ--INRMDNENKFFGY----DGISQVFSGPV-------EMVKCFPIENGLSYVVFK 575
                   ++  D E           G  Q  S           +++   ++   + +   
Sbjct: 1622 GAIQGAVVDTQDTERTLHQVQEKMAGAEQALSSAGERAQQLDGLLEALKLKRAGNSLAAS 1681

Query: 576  VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY-SVTVHDNLIQRYLD 628
                  G  Q + +    L Q    D   +V A  + +   V       ++  D
Sbjct: 1682 SAEETAGSAQGRAREAEQLLQGPLGDQYQTVKALAERKAQGVLAAQARAEQLRD 1735


>gi|281338355|gb|EFB13939.1| hypothetical protein PANDA_009358 [Ailuropoda melanoleuca]
          Length = 1805

 Score = 41.1 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 83/294 (28%), Gaps = 44/294 (14%)

Query: 373  NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
              + + +A     E  + L E   + + + E  R+                  +G+   A
Sbjct: 1456 ADLALGRARHTQAELQRALAEGGGILSHVAETRRQAGEAQQRARAALDKANASRGQVEKA 1515

Query: 433  IPYKEQLLFRV--FGKDDPLSKDHTVALPDGSYMWVQIKES---------------IPAR 475
                 +L+  V  F   +    D          +  ++ E                I  R
Sbjct: 1516 NQELRELIQSVKDFLSQEGADPDSIEM------VATRVLELSIPASPEQIQHLAGEIAER 1569

Query: 476  DRKLEEVLT-------DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
             R L +V T       DV++  + ++ A    S+A     +         +  +  GA+ 
Sbjct: 1570 VRSLADVDTILARTVGDVRRAEQLLQDARRARSRAEGEKQKAETVQAALEEAQRAQGAAQ 1629

Query: 529  LTTNQ--INRMDNENKFFGY----DGISQVFSGPV-------EMVKCFPIENGLSYVVFK 575
                   ++  D E           G  Q  S           +++   ++   + +   
Sbjct: 1630 GAIQGAVVDTQDTERTLHQVQEKMAGAEQALSSAGERAQQLDGLLEALKLKRAGNSLAAS 1689

Query: 576  VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY-SVTVHDNLIQRYLD 628
                  G  Q + +    L Q    D   +V A  + +   V       ++  D
Sbjct: 1690 SAEETAGSAQGRAREAEQLLQGPLGDQYQTVKALAERKAQGVLAAQARAEQLRD 1743


>gi|95929442|ref|ZP_01312185.1| Sporulation related [Desulfuromonas acetoxidans DSM 684]
 gi|95134558|gb|EAT16214.1| Sporulation related [Desulfuromonas acetoxidans DSM 684]
          Length = 387

 Score = 41.1 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 19/128 (14%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDV 323
           P I  + ++  P   +A +  Q L+ G+ F +LA E      + S   +G  S   +P+ 
Sbjct: 187 PHIYHLRRITLPTLTQARQVMQRLEDGELFEELAREFSTGSEAQSGGYVGGISLTSMPEN 246

Query: 324 SLADSIFSLAKKGD--FTP--VIHGSFGYVIAHVSNIKP----SFTVSFQEVKKDIANQM 375
                 FS    G   ++P  ++  S GY I  V  I P     +  + ++ K     QM
Sbjct: 247 ------FSRELAGRPCYSPAILLESSDGYHI--VQRIAPFNGDGWQKNAEKQKSQRRAQM 298

Query: 376 RITKASEK 383
                 ++
Sbjct: 299 DRHATQDQ 306


>gi|291535575|emb|CBL08687.1| hypothetical protein ROI_15630 [Roseburia intestinalis M50/1]
          Length = 347

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 46/152 (30%), Gaps = 15/152 (9%)

Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
               ++++E +           +         V    +E +E    +     F + A+E 
Sbjct: 164 ADTNVTDEEAKTGAYSYVGISKTTHQDESGNTVDYTDEEKEELAAKVA---DFAKAAKED 220

Query: 304 GKSLSDISLGSFSKEYI---PDVSLAD---SIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           G   +    G           D S+ D   +     K+G+ T +I G   Y +A +    
Sbjct: 221 GLDAAAEDAGYTVSTGTFTQEDDSVDDNLLAALKNLKEGEVTDLIDGDSSYFVARLDKEV 280

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
                  ++  ++    +   +  +   E   
Sbjct: 281 D------EDATEETRQSIIEQRKDDLYDETLD 306


>gi|270004597|gb|EFA01045.1| hypothetical protein TcasGA2_TC003961 [Tribolium castaneum]
          Length = 6431

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 61/420 (14%), Positives = 140/420 (33%), Gaps = 55/420 (13%)

Query: 189  NRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
             ++ DY V             +  V+    +  +D  +A  Y   S     V + +K IE
Sbjct: 3273 EKTKDYAVEKTEDAKTQGQQITQQVVETTKDVKRDAEKAKAYIE-SVGKQKVDDLDKAIE 3331

Query: 248  IS----NDELQAEY---EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ--SLKKGKKFIQ 298
                  ++E++      ++  +     + R V+ +    +K+ DE  Q   L KG    +
Sbjct: 3332 DMRAKIDEEVKDFQHSTQQKADDLAQVKDRAVKDVETAAKKKIDEMEQTKELVKGA-IEE 3390

Query: 299  LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              E+ GK+      G      + + S   +     K  + + V   +             
Sbjct: 3391 KVEDFGKTAGQAMNGF---GKVKESSTQAAA---QKIEELSQVKETAG------------ 3432

Query: 359  SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
                   EVK +IA       A  KV +  ++  +F+     + E ++    ++  +   
Sbjct: 3433 ---AKLDEVKDEIAVA-----AKGKVDDMAQKSSKFVDNLAKVKEEAKE--KITQKIDAK 3482

Query: 419  DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
                KD   +++  +   +++      K + L+++        +    ++ ++       
Sbjct: 3483 AKDIKDAVSQKIVDVDKTDKIFKTTTKKVEDLTEEAVNGFQKTTQKLSKVDKTKEEAIAD 3542

Query: 479  LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN-FRDIGKNLGASLLTTNQINRM 537
            L ++                     +QLV + +K  ++   D+ +   +   T++QI   
Sbjct: 3543 LSKLKDSASGTL-------------SQLVTDTAKSKESAIEDLMRIEQSLKDTSSQIAGE 3589

Query: 538  DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV-QEKDKFISYLTQ 596
             ++      D         ++ ++          V+ K  + K   +  E  K  S L Q
Sbjct: 3590 LSKGTSEKVDDFQAARQKAIDDIEKIKSSTKADAVIKKEVDQKKKELDDELSKLASSLEQ 3649


>gi|114567543|ref|YP_754697.1| hypothetical protein Swol_2032 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338478|gb|ABI69326.1| hypothetical protein Swol_2032 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 265

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 34/133 (25%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
            V  V  + +  S++   W++   ++  +         A+       IL++L+    +  
Sbjct: 94  VVARVNGETITASNWY--WEKINKILQAEFNNKSIPSDAK-------ILNDLIETKVISS 144

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE---------GINEKEY- 151
               +G+     ++   IA                ++  L  E         GI+E +Y 
Sbjct: 145 AARSLGIYPPEDQIKAYIA------------DQQKYMEILKPEEITILIQTWGISEDKYF 192

Query: 152 ---IDHYTKMLSR 161
               D +   L++
Sbjct: 193 LLMEDRFADSLAK 205


>gi|149201836|ref|ZP_01878810.1| PPIC-type PPIASE domain [Roseovarius sp. TM1035]
 gi|149144884|gb|EDM32913.1| PPIC-type PPIASE domain [Roseovarius sp. TM1035]
          Length = 414

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/249 (9%), Positives = 72/249 (28%), Gaps = 31/249 (12%)

Query: 142 AREGINEKEYIDHYT-KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN- 199
           A+   + + Y++              +      P +      ++   E   +D    +  
Sbjct: 31  AQNLFSPQIYVNDQAITGYELQQRARLLTLFRAPGDPQRLAREQLIEERIKIDAARASGL 90

Query: 200 -----------RHVPAIADPSNAVL-TQWFEK--YKDNYRAPEYKRISYILFDVHEKEKK 245
                            A+ +   L     +    ++++R      I++          +
Sbjct: 91  VLEEDLVRDGMEEFAGRANMTADQLIAALGDSGVSQESFREFVRAGITWRELTRARFAAR 150

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGKK---FI 297
           + +S D+L+           +     + +++ P     + +       S+ +      F 
Sbjct: 151 VSVSEDDLERA--TRALTGGAAVRVLLSEIILPVTSLEDAEAKQALAASIAESTSEGAFA 208

Query: 298 QLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
           + A     + S      +   +   +P   L   +  LA  G+ +  +       + ++ 
Sbjct: 209 EAARRHSAAPSSSRGGRMDWVALSELP-AGLRPIVLGLA-PGEVSDPLPLEGALALFYMR 266

Query: 355 NIKPSFTVS 363
           +I+     S
Sbjct: 267 DIEEMTVPS 275



 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 63/200 (31%), Gaps = 21/200 (10%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
           L +     L+W LS  +       S  + V  Q +          Q+   +        +
Sbjct: 12  LTLAVTGLLVWPLSGGMAQAQNLFSPQIYVNDQAITGYEL-----QQRARLLTLFRAPGD 66

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
            +R           + L+            GL  +   V         F G+ N  + D 
Sbjct: 67  PQRL--------AREQLIEERIKIDAARASGLVLEEDLVRD---GMEEFAGRAN-MTADQ 114

Query: 137 FVSRLAREGINEKEYIDHYTKMLS-RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
            ++ L   G++++ + +     ++ R      F   +  S   L++A R      +V  +
Sbjct: 115 LIAALGDSGVSQESFREFVRAGITWRELTRARFAARVSVSEDDLERATRALTGGAAVRVL 174

Query: 196 VLNNRHVPAIADPSNAVLTQ 215
           +  +  +  +    +A   Q
Sbjct: 175 L--SEIILPVTSLEDAEAKQ 192


>gi|172037585|ref|YP_001804086.1| hypothetical protein cce_2672 [Cyanothece sp. ATCC 51142]
 gi|171699039|gb|ACB52020.1| conserved hypothetical protein [Cyanothece sp. ATCC 51142]
          Length = 236

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 12/131 (9%)

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD 309
            E++  + +NK  +   E   + Q++ P +K A E F  +++ +  F Q A         
Sbjct: 98  QEVEKYFAQNKVDF---EQVLLYQIIVPYEKLAWEIFYQIEEEEMSFYQAAHIYDIDEQR 154

Query: 310 ----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS-- 363
                  G   + +      + +IF+   K   T  +    GY I  V     +      
Sbjct: 155 RYHCGHEGKLYR-FNLKPDFSANIFAAQPKKVIT-PLKTDQGYHILMVEEFIEAELTPIL 212

Query: 364 FQEVKKDIANQ 374
           ++E+   +  +
Sbjct: 213 YEEIMDRMFQE 223


>gi|37993071|gb|AAP97044.1| putative peptidylprolyl isomerase [Lactobacillus reuteri DSM 20016]
          Length = 128

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 30/124 (24%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
           G+  V +    K+  S + +S KQ                        K++L  ++    
Sbjct: 23  GNKAVATTSGGKITESEYYSSMKQTSA--------------------GKQVLQQMILDKV 62

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           L+   +  G E    +V    A+   +  +        F + L  + + EK         
Sbjct: 63  LE---KQYGKEVSDKQVN---AQYNTYKNEYGS----DFNAYLQSQNLTEKSLKQQIRSN 112

Query: 159 LSRT 162
           L  T
Sbjct: 113 LLLT 116


>gi|24641961|ref|NP_536743.2| mushroom body defect, isoform C [Drosophila melanogaster]
 gi|22832727|gb|AAN09584.1| mushroom body defect, isoform C [Drosophila melanogaster]
          Length = 1871

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 53/419 (12%), Positives = 135/419 (32%), Gaps = 42/419 (10%)

Query: 162  TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN---AVLTQWFE 218
            + +    +   +  +L     +      R++   +   + +      S+   A + + +E
Sbjct: 1022 SKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYE 1081

Query: 219  KYKDNYRAP---EYKRISYILFDVHEKEKKIEISNDE----LQAEYEKNKEKYFSPEIRT 271
            +     +A    E K+  ++  + ++   +++    E    +  + E+ + K    +   
Sbjct: 1082 EQIKALQAKCDMEAKKNEHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLV 1141

Query: 272  VEQLVFPNQ-----KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
              Q +  +           A+++  K    +Q  +E G+ L D       KE      + 
Sbjct: 1142 DSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVN 1201

Query: 327  DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR--------IT 378
             +I +  K  D       S   ++ ++            +VK  I  Q +          
Sbjct: 1202 SAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKE 1261

Query: 379  KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
             A + V      L++       ++     +  +S DL     + + +       +  + +
Sbjct: 1262 SAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERK 1321

Query: 439  LLFRV---------FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
             L +V            D    K+    L D   + V++ +      ++L +V + ++  
Sbjct: 1322 ELAQVNSAFEAQTKLSDDLQREKESAQQLVDN--LKVELDKER----KELAQVKSVIEAQ 1375

Query: 490  WK----TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
             K      +  E      + L +E  KE K    +   + A    ++ + R     +  
Sbjct: 1376 TKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQL 1434


>gi|291535555|emb|CBL08667.1| Predicted permease [Roseburia intestinalis M50/1]
          Length = 1034

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 73/219 (33%), Gaps = 6/219 (2%)

Query: 362 VSFQEVKKDIAN-QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
              ++ K  I + + ++  A +K++     LE+  A   +  E + +EK   +D   V  
Sbjct: 279 KQLEDAKSQIEDGEKQLADAKKKLEYAPDELEKKEAE-LTEAEKAIQEKETQLDQAEVAL 337

Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
                +G           +   +F ++         +   G  +     +   A+ + + 
Sbjct: 338 GIGYAQGVGQIQKALNG-ISEGLFSENGDQGNGAAGSFSSGDALADAGSQIADAKAQ-IA 395

Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
           +    + +  K +++ +   +KA + + E   +        +   A     +     ++ 
Sbjct: 396 DGRAQIAEAKKQIESGKSAIAKAKKQLEESKTQ--IAEKEAELSDAKTQYEDGKKEYEDG 453

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
              +  +                 +++  +YV+ + TN 
Sbjct: 454 LSTYNEEIEKAEKKISDGEKTLKELKDPDTYVLGRDTNV 492


>gi|239906606|ref|YP_002953347.1| hypothetical protein DMR_19700 [Desulfovibrio magneticus RS-1]
 gi|239796472|dbj|BAH75461.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 320

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 47/154 (30%), Gaps = 10/154 (6%)

Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQLAEEQ 303
           E S  EL+A YE +   +      T  Q  + ++     A E     +        A  Q
Sbjct: 151 EPSEAELRALYEADPVAFAPVAELTFRQSAYSDRARGGRAKEEAIQARDALSGQNAAAGQ 210

Query: 304 GKSLSDISLGSFSKEYIPDVSLA------DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
           G       L   S+   P  + A       +  +    G +   +     + +  V   +
Sbjct: 211 GL-GDHTELPERSENVTPAEAAALFGDAFAAALTTLPVGSWQGPLATLGDWHLVFVEAAR 269

Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
                 F+  +  +A   +  +   + ++ Y   
Sbjct: 270 RGPPPPFEAARPAVAEAWKRGRLEAERRQAYAAA 303


>gi|159128045|gb|EDP53160.1| anucleate primary sterigmata (ApsB), putative [Aspergillus fumigatus
            A1163]
          Length = 1637

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 83/286 (29%), Gaps = 55/286 (19%)

Query: 58   NSWKQELGMI--------SQKIGFVV------NSERARSVGLDKKILDNLVSG-ATLDQF 102
             + + EL  +          ++G ++      + +  R   L     D LV     L Q 
Sbjct: 738  QALRNELNYVIALPRAGQRDRVGSMISYTTASDRDMTRMPTLTSSSSDTLVEEIRLLRQE 797

Query: 103  IEDIGLEAD------------HGRVWGEIARSPLFHGKDNK--------FSHDVFVSRLA 142
              ++  E                R++ EI    L   +D          F      ++  
Sbjct: 798  NAELRREVSAQTSMLTSRNKEKERLYQEIEELKLGQRRDGVRSVAGDSIFDRSASRAQGR 857

Query: 143  RE-----GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
                   G       D   + L     +      +    L  +Q  R   E R  +Y  L
Sbjct: 858  SSSRASDGTGPSRSDDAEREDL--EQRIDQLRDQVSALKLE-NQTIRAELEERIAEYDAL 914

Query: 198  NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND------ 251
            + +   A  D ++ +     ++  +  R      ++  + D    E    +  +      
Sbjct: 915  D-KQYQADVDGADEMFNALHQERDEAERKMNDCLVNMQIMDAQYTEDIENLEEEVRRKTE 973

Query: 252  -----ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
                 E +   +    +    E+R+  + +   +++A    Q  +K
Sbjct: 974  ECGRLEEELRNQDENLRALQAEMRSASEGIIRLEEDAQTNLQRYEK 1019


>gi|301603965|ref|XP_002931652.1| PREDICTED: WD repeat-containing protein 65-like [Xenopus (Silurana)
           tropicalis]
          Length = 1190

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 115/329 (34%), Gaps = 24/329 (7%)

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
           + E++ +         ++        ++ K  ++ +  RL     NEK  +   T+   +
Sbjct: 688 YAEEVLITKSDLEEKNQVMLELKTRVEELKMENE-YQLRLKDMNYNEK--LKELTEKFIQ 744

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
              V      +  ++      K    +    + +   +R +  +   ++  L   +EKY+
Sbjct: 745 EMEVLKTTNQILKTDSERQDIK---HQEDVAELLEKQSREIQDLETSNSQKLLLEYEKYQ 801

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
           +     +  +  Y       +E KI+    E+   YE         E  +V QL    QK
Sbjct: 802 ELQLKSQRMQEEYEKQLHELEESKIQALE-EITEHYEA-----KLQEKMSVLQLFSSLQK 855

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDF 338
           E +E    ++K K   Q  +   KSL    LG   +    D ++ D    I+ L KK   
Sbjct: 856 EIEERAADIEKMKAEQQKLQGVIKSLEKDILGLKREIQERDETIQDKEKRIYDLKKKNQE 915

Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
                    Y I  +           +E+K+ I     +    E+  +   +L+      
Sbjct: 916 LEKFKFVLDYKIKELKKQIEPRENEIKEMKEQIQE---MESELERFHKQNSQLD------ 966

Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKG 427
            ++ E+ ++ K    ++       +D++ 
Sbjct: 967 LNIAELKQKLKATDREMHKERQKVRDIEA 995


>gi|332829601|gb|EGK02247.1| hypothetical protein HMPREF9455_01517 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 288

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 17/161 (10%)

Query: 247 EISNDELQAEYEKNKEKYFSPE---IRTVEQLVFPNQKEA----------DEAFQSLKKG 293
            +S +EL+A YE+NK+K+   +        ++   +++ A          D A ++++K 
Sbjct: 120 SVSENELKAYYEQNKDKFKLEDNIIKGLYLKIPVNSKQLANFQKWYKQGNDAAIENIEKN 179

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
                +A E       + L     E +P     + IF    K     +   SF Y++   
Sbjct: 180 TLQNAVAYEYFYD-KWVGLVDVL-ENMPPAVTDEKIFLQRNKN--LELRDSSFVYLLNIK 235

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
                     +  VK  ++      K ++ +++  K L + 
Sbjct: 236 EYELTGSEAPYDYVKGQLSEMYMEQKKADYLQQVKKDLYDK 276


>gi|84999748|ref|XP_954595.1| peptidylprolyl isomerase [Theileria annulata]
 gi|65305593|emb|CAI73918.1| peptidylprolyl isomerase, putative [Theileria annulata]
          Length = 142

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                E   +     LG F +  +      ++ F L +  + + ++    G  + +
Sbjct: 86  ATAKSECSSARKGGDLGFFDRNTMQKP-FTEASFKL-EVNEISDLVETDSGVHLIY 139


>gi|71031999|ref|XP_765641.1| peptidyl-prolyl cis-trans isomerase [Theileria parva strain Muguga]
 gi|68352598|gb|EAN33358.1| peptidyl-prolyl cis-trans isomerase, putative [Theileria parva]
          Length = 116

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
                E   +     LG F +  +      ++ F+L K  + + ++    G  + +
Sbjct: 60  ATAKSECSSARKGGDLGFFDRNTMQKP-FTEASFNL-KVNEISDLVETDSGIHLIY 113


>gi|293402299|ref|ZP_06646437.1| putative alpha-N-acetylglucosaminidase [Erysipelotrichaceae bacterium
            5_2_54FAA]
 gi|291304406|gb|EFE45657.1| putative alpha-N-acetylglucosaminidase [Erysipelotrichaceae bacterium
            5_2_54FAA]
          Length = 2330

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 63/448 (14%), Positives = 141/448 (31%), Gaps = 63/448 (14%)

Query: 204  AIADPSNAVLTQWFEK----YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
            AI       L     +     KD+Y A  Y+ ++  L       KK EIS ++++     
Sbjct: 1560 AIVKVDTTALEALIAEVKALKKDDYTAQSYQIVTNQLEVAEALLKKDEISEEDVK----- 1614

Query: 260  NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319
             K  +              + K+A     S++   K   L +E        S  SF    
Sbjct: 1615 -KVAFA-----------LQSAKDALVEKASVESVTKLESLVKEAKGMKDAYSEDSFKDV- 1661

Query: 320  IPDVSLADSIFSLAKKGDFTPVIHGSFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRIT 378
                +  D+  SL K  D   +        I    S I+    V+ QE KK ++  ++  
Sbjct: 1662 ---QAAMDAAESLLK--DLANMSEEDAKESISILSSAIETLKNVTLQEAKKQLSETIQQA 1716

Query: 379  KA-------SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
            +A       ++   E  K L+  L     + E  +   +  I              + + 
Sbjct: 1717 RALLEDETIAQMTAESVKALQAALTKANEVYE-DQEATLAHIKEAQTTLTKAIKGLEPIK 1775

Query: 432  AIPYKEQLLFRV---FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
                  + L        + D  +  + V           ++++ P+     EEV    K 
Sbjct: 1776 TDTSALRTLIAAVEQLAETDYTANSYKVVAEKLQIAKAVLEKTNPSA----EEVK---KA 1828

Query: 489  DWKTVKTAEEVSSKANQ----LVLEYSKEGKNFRDIGKN-----LGASLLTTNQINRMDN 539
            +       + +  +A++    ++    ++GK  +D         +  +L     +    +
Sbjct: 1829 ELALQNAQKALVVRASKESVDVLKRLVEDGKKMKDAYTEEAFKDVQTALDLAQGLLTDPS 1888

Query: 540  ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
                     +    S  ++ +    ++     +   +T + +          +   + M 
Sbjct: 1889 NMAEVTTKEVVLSLSTAIDALHKLTLQEAKEQLAEMITYADIL-------LKADTIEQMT 1941

Query: 600  KDLLDSVIAYLKSQYSVTVHDNL-IQRY 626
             + + ++   LK    V  ++   +++ 
Sbjct: 1942 AESVQALQTALKQAKEVIANEKASLEQI 1969


>gi|237734705|ref|ZP_04565186.1| predicted protein [Mollicutes bacterium D7]
 gi|229382033|gb|EEO32124.1| predicted protein [Coprobacillus sp. D7]
          Length = 459

 Score = 40.7 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 15/126 (11%)

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYR-----------APEYKRISYILFDVHEKEKKI- 246
           N      A  +   L  + ++ K ++              +     Y   ++  +   + 
Sbjct: 133 NADDKKKARSTFGELESYCKENKIDFEDYLHSTFGLEATKDNLISYYEEANLASRYAAVL 192

Query: 247 --EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
             E +++E++  Y  NK    +  IR        ++ +ADE  Q ++    F Q+A +  
Sbjct: 193 LKEPTDEEVEQYYLANKNDIDTINIRYFAFAK-DDKAKADEFAQKIRSEADFKQMAVDYS 251

Query: 305 KSLSDI 310
                I
Sbjct: 252 SDDKKI 257


>gi|46190938|ref|ZP_00206617.1| COG3210: Large exoproteins involved in heme utilization or adhesion
            [Bifidobacterium longum DJO10A]
          Length = 1533

 Score = 40.7 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 114/345 (33%), Gaps = 36/345 (10%)

Query: 195  IVLNNRHVPAIADPSNAV--LTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIE---I 248
            I L           ++A    T  ++  K ++ A E    +   +     +         
Sbjct: 1192 ITLTLADGTTKDVVTDAEFSTTTMWQ--KASFDAVENVTAVRLTVLSSAGQSDSQANKFA 1249

Query: 249  SNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL--AEEQGK 305
            S  EL+   ++  E+   +P+   +         +A+   +S    + +  L  A E  +
Sbjct: 1250 SAAELRLTTDREVEEETVAPDKTDLN----DTIAKANGLKESDYTAESWTALVKAREAAQ 1305

Query: 306  SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
            +++D    +     +   +L  +I  L K G+         G V  + ++++ +   + +
Sbjct: 1306 AVADNDKATAYDVALALTNLESAIAGLEKTGEEPGP-----GPVEVNKTDLQTAVNKASK 1360

Query: 366  EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
              K D         A E +K   + L+   A    +D      +     L        + 
Sbjct: 1361 LEKADYTTNSWEAFA-EALKAAQQVLDNKNATQQDVDTALSALQDAISKLEAATEPKPNP 1419

Query: 426  KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            +   V         + +    +  L  D +          ++      A  +K  EV  +
Sbjct: 1420 E-PGVVDKAALNATINKAAAINLGLYTDDSAN-------ALR------AALKKAREVSDN 1465

Query: 486  VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 K V  A E   KA   +++ +   K   ++  N GA+++T
Sbjct: 1466 SNATQKQVDAAREALEKAIAGLVKRTAA-KGDGNVVSNTGANVVT 1509


>gi|328851900|gb|EGG01050.1| hypothetical protein MELLADRAFT_111323 [Melampsora larici-populina
           98AG31]
          Length = 188

 Score = 40.7 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 32/111 (28%)

Query: 271 TVEQLVFP-----------------NQKEADEAFQS----------LKKGKKFIQLAEEQ 303
               ++                    Q EA E  +           ++  +KF  LA+  
Sbjct: 76  RASHILIKHANSRRPSSWKETQITRTQSEAIEILKEHEEILRPLNGIQLNEKFQDLAKVH 135

Query: 304 GKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
               S      LG F K  +   S  +  F L + G+ + ++    G  + 
Sbjct: 136 SDCSSYSHGGDLGQFKKGQM-QKSFEEVSFQL-QIGELSKIVTTDSGVHLI 184


>gi|182438226|ref|YP_001825945.1| putative lipoprotein [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466742|dbj|BAG21262.1| putative lipoprotein [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 218

 Score = 40.7 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 41/142 (28%), Gaps = 6/142 (4%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
            + S       VG +++  S+  +          Q+          +S  L++  L  L+
Sbjct: 26  GNQSHPGAAAVVGGERIEVSTVQDRAADVRSA--QENSPEAAQLVNKSGQLNRAKLHGLI 83

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
            G  LD+   D G+      +      S    G + +F        L +  +   +    
Sbjct: 84  FGRILDRAAADAGVTVTRKEIQEMRKASGAQQGGEERFEA----MMLQQRWVAPDQIDAD 139

Query: 155 YTKMLSRTDVVGMFVGGMRPSN 176
             + +    +       +    
Sbjct: 140 MRQEVQLPKLAEALGADLGTPA 161


>gi|124026804|ref|YP_001015919.1| hypothetical protein NATL1_20991 [Prochlorococcus marinus str.
           NATL1A]
 gi|123961872|gb|ABM76655.1| Conserved hypothetical protein [Prochlorococcus marinus str.
           NATL1A]
          Length = 248

 Score = 40.7 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGDFT 339
           K  +   + L+K   F  +A          S G      + +   +   I   +K+GD T
Sbjct: 125 KARELKIRILEKEATFSDMAISYSNGFEKKSGGLIGPTSLINAHSSLIDILRTSKEGDIT 184

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEV-KKDIANQMRITKASEKVKEDYKRL 391
                   YVI  +    P+      EV  K +A ++     +E V E +  +
Sbjct: 185 GPHKIEKWYVIVRLEKFTPAK---LDEVTHKKMAQELFEEWVNEAVDEMHNAI 234


>gi|148255225|ref|YP_001239810.1| hypothetical protein BBta_3828 [Bradyrhizobium sp. BTAi1]
 gi|146407398|gb|ABQ35904.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 312

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 39/147 (26%), Gaps = 17/147 (11%)

Query: 19  VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
            +      +      L      S VV V    +         K             +N  
Sbjct: 11  ALAICSLAVLASGAGLIPAQAQSIVVMVNGDPITDYDIEQRMK-------------LNFL 57

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
             R     +++++ L+      +  +  G+E     V    A      G   + + +   
Sbjct: 58  STRKQQSRQEVINELIDDKVKIKEGKKFGVEPTASDVDQSFAGM----GSRMRLNAEQLT 113

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVV 165
             L  +G+  +         +  T +V
Sbjct: 114 KSLESQGVRPETLKARIKAEIVWTSLV 140


>gi|171684001|ref|XP_001906942.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941961|emb|CAP67613.1| unnamed protein product [Podospora anserina S mat+]
          Length = 2405

 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 74/617 (11%), Positives = 190/617 (30%), Gaps = 75/617 (12%)

Query: 40   SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S     V   +          + E       +   V   +++    D+K+ D + S    
Sbjct: 1057 SELAAKVADLEKSIDEIAKK-QSERSAQEAALEDEVKMLQSQLSLKDRKVRD-MESKLLK 1114

Query: 100  DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK-- 157
                 DI L      +     ++     ++ +        +LA+      +Y D   K  
Sbjct: 1115 ADQDLDIKLRTVEKELQTSRTKNSQLSAENREI-----QQQLAQLSKTSTDYEDLVRKKE 1169

Query: 158  -------------MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
                          + R  +               ++ +    E  +V         +  
Sbjct: 1170 SELALLRSDNKKYEMERRSLEDQRKTLSAEREKTAERLRDIQAELTAVRA---QQDQLKR 1226

Query: 205  IADPSNAVLTQWF------EKYKDNYRAP------EYKRISYILFDVHEKEKKIEISND- 251
             A  +N +L          ++ +    A       E  ++   L    +    + +  + 
Sbjct: 1227 EAADANKLLQARLSEDAQADENRQLLEAQVKDLKDELYKVQMELSRERQSRDDVALLGEH 1286

Query: 252  ---ELQAEYEK--------NKEKYFSPEI-RTVEQLVFPNQKEADEAFQSLKK---GKKF 296
                L+ EY+          KE Y   +  R + +     +KE DEA Q ++     K  
Sbjct: 1287 KYNTLKEEYDHLNESKITIEKELYAQQDTLRRMMETRAAAEKERDEARQEIRALRVAKTQ 1346

Query: 297  IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
             + A  + + + + +    ++E   + SL  ++ S + + +          Y I  ++ +
Sbjct: 1347 AEEARREAEIIGERAASKIAREK--EESLRKALESASNRVNSLEEQVADLTYQIEDLNKV 1404

Query: 357  KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
                    +  +  + N     +   ++     RL    A       +  + +   +++ 
Sbjct: 1405 I------LESGEFGLKNDQAKERLERELVTVKGRL---AASENDNKALLNKLQQKGLEIA 1455

Query: 417  LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
                   +    ++  +  ++  L       +  +      L D       +++ +    
Sbjct: 1456 RSSSRASEASRGQIMGLQREKARL-------EEQNAKLNKQLGDSQVTIASLEKRLEKLQ 1508

Query: 477  RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-IN 535
              LE++  +V ++ +  + AE+ SS A   + E ++  ++ R +  +   ++ T  Q ++
Sbjct: 1509 LSLEDLNHEVAREVQNSRAAEKASSSATAQLAEANRTIESERQLRTHAQGTVRTLQQTLD 1568

Query: 536  RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
              D E        +  +     E V     E G    + K  +      + +        
Sbjct: 1569 SRDIELADLRGQLLDALKIVDPEFVPTIQSEGGADKFLSKNLDLARKIEELQQNLR---V 1625

Query: 596  QMMNKDLLDSVIAYLKS 612
            Q   +   ++ +  L++
Sbjct: 1626 QTAARANAEAHVVELRA 1642


>gi|325266978|ref|ZP_08133648.1| cis-trans isomerase [Kingella denitrificans ATCC 33394]
 gi|324981478|gb|EGC17120.1| cis-trans isomerase [Kingella denitrificans ATCC 33394]
          Length = 317

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 68/189 (35%), Gaps = 17/189 (8%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE--------IRTV 272
           ++ YR  E  +   I + +      I+I+++++QA   + + K  +P         IR V
Sbjct: 125 REAYRT-EVAKDLLITYMLQNLNSNIKITDEQVQAALNELQAKGQAPTGEPYTVYTIRRV 183

Query: 273 ------EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS-FSKEYIPDVSL 325
                 +Q +    +   +   ++ +G  F  +A+   + +   + G   +   +     
Sbjct: 184 ILNAANQQHMPAVGQRIQQIATAIAQGSDFGAVAQRYSQEVQAANQGLHDNITDMMLPEN 243

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            ++     + G  TP +     + I  +   +     +  + ++ +   +          
Sbjct: 244 VEAALHQLQPGQITPPLRAGNSWQIVQLIGARTENDPAKMQ-REAVRRMLVRQAQERNQA 302

Query: 386 EDYKRLEEF 394
           +   +L++ 
Sbjct: 303 QFMAQLQQM 311


>gi|198276170|ref|ZP_03208701.1| hypothetical protein BACPLE_02359 [Bacteroides plebeius DSM 17135]
 gi|198270982|gb|EDY95252.1| hypothetical protein BACPLE_02359 [Bacteroides plebeius DSM 17135]
          Length = 423

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 73/195 (37%), Gaps = 16/195 (8%)

Query: 176 NLLLDQAKRFYFENRSVDYIVLN---NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
              +++ + +Y +  +V  + +       +      ++A    W      ++R       
Sbjct: 23  ETSVEEFEHYYTQVYAVSRVSVEQFLPHFLYYKLKVADAKRQSW--DTITDFRLQCSALQ 80

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           + IL     +++ +    D L       +  +  P+  + EQ     ++  D  + +LK 
Sbjct: 81  NEIL---KSEKRGVPQKQDTLLNWVRFRQISFLLPQHASSEQERVA-RQRIDSVYTALKN 136

Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSFGY 348
           G  F +LA+   K+L          E+IP+        + + +L KKG+++       G 
Sbjct: 137 GIPFEKLAQPYIKNLLPSP--YLDGEWIPERCLIKEFTEQLSTL-KKGNYSAPFFSPLGI 193

Query: 349 VIAHVSNIKPSFTVS 363
            I ++ + +     S
Sbjct: 194 HIVYLLDRRQGVYPS 208


>gi|169601530|ref|XP_001794187.1| hypothetical protein SNOG_03633 [Phaeosphaeria nodorum SN15]
 gi|160705955|gb|EAT88838.2| hypothetical protein SNOG_03633 [Phaeosphaeria nodorum SN15]
          Length = 1508

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 38/122 (31%), Gaps = 14/122 (11%)

Query: 97   ATLDQFIEDIGLE---------ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
              L Q +    L          A    +      +     KD+ F    FV RL  EG  
Sbjct: 1290 TALQQQLARQSLRTKPPFVTGCASPFELRRH-FSASAPQQKDHHFDTLKFVQRLKDEGFT 1348

Query: 148  EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
            E++        +    +        R   L  DQ K  Y +   VD+  L +  + A + 
Sbjct: 1349 EEQAEGMMR--ILSDVIEESIQNLTRTMVLREDQEKATYTQK--VDFAKLRSELMTADST 1404

Query: 208  PS 209
             S
Sbjct: 1405 ES 1406


>gi|166368195|ref|YP_001660468.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Microcystis
           aeruginosa NIES-843]
 gi|166090568|dbj|BAG05276.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Microcystis
           aeruginosa NIES-843]
          Length = 253

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 69/199 (34%), Gaps = 17/199 (8%)

Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
           E R+  Y              ++  +  W  +   +    EY     IL D+  ++ K E
Sbjct: 48  EERNAAYSRF----YQNNQIANDEQMKSWLRQNGMDSEQLEY----LILRDIKLEKFKQE 99

Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKS 306
             ++++++ + + K +    +      +   N   A E F  ++  +  F +LA++  + 
Sbjct: 100 TWDNKVESYFLQVKNQL---DKVVYSLIRTKNIGIAQELFFRIQDRENSFAELAKKYSQG 156

Query: 307 LSDISLGSFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK--PSFTV 362
               + G      +  P   +   I   +K G   P        VI  +           
Sbjct: 157 AEAETGGLIGPVELSTPHPQIGQ-ILKASKPGQLWPPTQVGEWVVIVRLEKYLSCELDPP 215

Query: 363 SFQEVKKDIANQMRITKAS 381
           + Q ++ D+  Q  +T+  
Sbjct: 216 TRQRLRNDLFQQWLMTQMQ 234


>gi|331084269|ref|ZP_08333374.1| hypothetical protein HMPREF0992_02298 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401804|gb|EGG81381.1| hypothetical protein HMPREF0992_02298 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 369

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 7/120 (5%)

Query: 278 PNQKEADEAFQSLKKGKKFI-----QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
             + +A      L             LA+E  ++LS +     +++ + D  L ++  +L
Sbjct: 210 EKKAQAQSVLDKLLASDDPAMADVDTLAKEVDENLSALDTTFGAEDTLLDEKLLEAAKTL 269

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                +  V+ G   Y +  +  +           K+ I N+ +     + + E  ++ E
Sbjct: 270 QDGQVYESVVEGENAYYVVRMDQVLDREAT--DAEKEQIVNERKQEAYQKLLDEWKEKAE 327


>gi|283850615|ref|ZP_06367902.1| hypothetical protein DFW101DRAFT_0472 [Desulfovibrio sp. FW1012B]
 gi|283573858|gb|EFC21831.1| hypothetical protein DFW101DRAFT_0472 [Desulfovibrio sp. FW1012B]
          Length = 520

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/192 (9%), Positives = 47/192 (24%), Gaps = 39/192 (20%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
            V  V    +            LG +          E+ R+      +L +++    + Q
Sbjct: 37  VVAVVNGAPIRLPDLEARHG--LGRLGAPEAGNPAVEQLRAEY--GAVLADMIVARLVRQ 92

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
            +  +GL      V                                            + 
Sbjct: 93  ELARLGLAVTPAEVEAA---------------------------------EAQVRADYAT 119

Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
            D    F   +    + L + +    +   +     +   +   A    +    +++++ 
Sbjct: 120 GDSGDAFERMLLEERIDLGRWREVLGDR--LALAKFSREVLRQNARVDVSEAAAYYKEHI 177

Query: 222 DNYRAPEYKRIS 233
           D +  P   R++
Sbjct: 178 DAFTRPARVRLA 189


>gi|255073185|ref|XP_002500267.1| dynein-1-alpha heavy chain, flagellar inner arm I1 complex
            [Micromonas sp. RCC299]
 gi|226515529|gb|ACO61525.1| dynein-1-alpha heavy chain, flagellar inner arm I1 complex
            [Micromonas sp. RCC299]
          Length = 4401

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 100/311 (32%), Gaps = 47/311 (15%)

Query: 137  FVSRLAREGINEK---EYIDHYTKMLSRTD---------VVGMFVGGMRPSNLLLDQAKR 184
            +        +  K   ++I +Y K L+            + G     M  +  +    K 
Sbjct: 2923 YDQLRRHNYVTPKNYLDFIANYQKSLTTQRKLNTDYTNRLDGGLQKLMMAAEDVAQMQKE 2982

Query: 185  FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY-------KRISYILF 237
               +   V    +  + +  +   + A +    E+ +      E        +       
Sbjct: 2983 LAAQKIVVQAKTVEVQELLEVITKNTAEV----EEKQTAAATKETQLAEDSVRIAREKEE 3038

Query: 238  DVHEKEKKIEISNDELQAEYEKNKE------KYFSPEIRTVE-----QLVFPNQKEAD-- 284
               +    I    +  +A    NK+       Y +P    V+     Q++    +E    
Sbjct: 3039 AEADLAAAIPALEEAAEALKNINKDDITNLKSYANPAEVIVKVLECVQILKAVPEEEIGW 3098

Query: 285  EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            +  Q++     FI+  +E  K           K Y+ D       F+L +    +    G
Sbjct: 3099 KGAQAMMTDFNFIKSLKEFEKDGITKDQIKMIKGYMKDKK-----FTLEEIKSVSKPAAG 3153

Query: 345  SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL-ALGTSMDE 403
             F +V+A ++  K +       VK       +  KA +K + +   ++  + AL   + E
Sbjct: 3154 MFKWVLAMMNYYKIASG-----VKPKRLKVAKGVKALKKAETELAEIKATVEALNAELAE 3208

Query: 404  ISRREKIVSID 414
            +S+  +  + +
Sbjct: 3209 LSKTFEASTAE 3219


>gi|114766150|ref|ZP_01445154.1| PPIC-type PPIASE domain [Pelagibaca bermudensis HTCC2601]
 gi|114541610|gb|EAU44652.1| PPIC-type PPIASE domain [Roseovarius sp. HTCC2601]
          Length = 408

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 51/157 (32%), Gaps = 18/157 (11%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           +  ++V    +           +   +   +             +++   + L+      
Sbjct: 32  APAITVDEMVITGYEIE-----QRRRMMTLLNAP--------GNVNELSREQLIDDRLRL 78

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           +     G+E     +         F G+ +  S + FV+ L + G++E+ + D      +
Sbjct: 79  KAARAAGIEPSEQDILD---GMDEFAGRAD-LSREQFVAVLNQGGVDEETFRDFVRAGTA 134

Query: 161 -RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
            R  V   F    + +   +D+A      +  V  ++
Sbjct: 135 WRDLVRAQFASRTQVTPEEVDRALASGGGSSDVRVLL 171


>gi|332707265|ref|ZP_08427318.1| Parvulin-like peptidyl-prolyl isomerase [Lyngbya majuscula 3L]
 gi|332353999|gb|EGJ33486.1| Parvulin-like peptidyl-prolyl isomerase [Lyngbya majuscula 3L]
          Length = 149

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 27/167 (16%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           Y    Y     H    K+E         + +N+  Y       + +++  +Q  A E F 
Sbjct: 3   YNGAIYGKLAKHLFADKVEP-------YFFENQLDYAG---VVMYEVIIDDQDLAMELFY 52

Query: 289 SLKKGK-KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            ++KG+  F  +A +  +           G  ++E I    ++ ++F+ AK  +    I 
Sbjct: 53  GIQKGEMSFYDVAHQYIQDKELRRYGGYQGVVTREQI-KPEISAAVFA-AKPPEVLKPIV 110

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
            S G  +  V  I          ++  + +++R         E  K+
Sbjct: 111 TSKGVHLILVEEI----------IEPQLDDKLRSQILLNLFSEWTKQ 147


>gi|325180390|emb|CCA14793.1| dual specificity mitogenactivated protein kinase kinase putative
           [Albugo laibachii Nc14]
          Length = 793

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSN--IKPSFTVSFQEVKKDIANQMRITKASEKV 384
           D    L    +       S G+   HV +   +P   +  + +      + R  KA+ ++
Sbjct: 194 DEKAELKISKEVRDNRKNSLGHHKIHVDSPPKRPQLRLKLENMPTSQQAEQRAQKAANRL 253

Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
             + K +++    G + DEI    +   + + L  ++     G      P   +     +
Sbjct: 254 IFERKAIQDMQIAGQADDEIKPAAQQAMMKMTLRSYSS---GGDSDLPSPNGSEGRQSAY 310

Query: 445 GKDDPLSKDHTVALPDGSY 463
             +  +    +VA+ +   
Sbjct: 311 SPNHGMFTTESVAISEAGI 329


>gi|319789891|ref|YP_004151524.1| hypothetical protein Theam_0916 [Thermovibrio ammonificans HB-1]
 gi|317114393|gb|ADU96883.1| hypothetical protein Theam_0916 [Thermovibrio ammonificans HB-1]
          Length = 187

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 20/117 (17%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
           S + +  +  V  +K+       +                      +    K++L+NLV 
Sbjct: 17  SAASAKVLAEVNGKKITDKDLNAAIDSLPPQYHT---------LKNNPTFRKRMLENLVK 67

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
              L Q     GLE             P F  +  +    + V  L  + +   +  
Sbjct: 68  EELLYQEALKEGLE-----------NDPAFKRRLEQIKKRLLVQYLLSKHVKPPKVE 113


>gi|27597140|dbj|BAC55134.1| EpsD [Methylobacillus sp. 12S]
          Length = 234

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 13/107 (12%)

Query: 11  TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
           T++ K   V + V     G S+     S       V  +++       + K         
Sbjct: 2   TFMKKAVFVAMVVALAACGKSEE--KSSSGQVAAIVDGKEISVLQLNQAMKNM------- 52

Query: 71  IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
               V ++ A +  + K++LD LV    +     +  +E     +  
Sbjct: 53  --PNVTADNADA--VRKQLLDRLVDQQVVLNKALEEKVERSAEVISS 95


>gi|253582821|ref|ZP_04860041.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835397|gb|EES63938.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 178

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 11/144 (7%)

Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
           A+  + EKE        ++R  V    +  ++ +    ++ +        +       R 
Sbjct: 33  AQITLTEKE-KQKDKDEVARILVYKALLEEVKKAEFTPEELENIQIAQNQIKINYFIERE 91

Query: 202 VPAIADPSNAVLTQWFEKYKDNYR---APEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
           +      ++     +++K+KD +      E   I Y    V +  +            Y 
Sbjct: 92  LKNKTQITDEEAADFYKKHKDQFDDKPLEEMLPILYKSLAVEKYNQAQV-------EYYN 144

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKE 282
              EKY   +I   E ++   + E
Sbjct: 145 SIIEKYKLNDILKKEGIIKDEKAE 168


>gi|255939644|ref|XP_002560591.1| Pc16g02190 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585214|emb|CAP92889.1| Pc16g02190 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 436

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 13/123 (10%)

Query: 38  SGSSTV-VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG--LDKKILDNLV 94
            G++ V   +G   +P   ++  +   L ++   +G  +   + RS G  LDK  + + +
Sbjct: 132 PGANRVRAKIGNVMIPRKDWMY-YDDHLALVQTPLGESLQDLQIRSAGERLDKLSIQSTI 190

Query: 95  SGATL--DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
               L  D    +  L      + G+I    +F    +K   D +V     E  + +++ 
Sbjct: 191 YQMLLALDYLHTECHL------IHGDIKGDNIFQEIGDKTRLDRYVQA-EMENPSPRKFA 243

Query: 153 DHY 155
           D Y
Sbjct: 244 DDY 246


>gi|293369502|ref|ZP_06616081.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292635387|gb|EFF53900.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 515

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 53/144 (36%), Gaps = 14/144 (9%)

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKK--FIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
           P+  T    +   +   D  +Q+++      F +L E             + +       
Sbjct: 136 PQTITSRH-LEEEKTRMDSIYQAIQNQPDLNFNRLVEIYSDDKQS----RWIECLETTSE 190

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK- 383
             +  FSLAK G  +       G  I  V + +   T +++ V   +  ++R  +  +K 
Sbjct: 191 FENVAFSLAK-GMASQPFFTPEGIHILKVMDREE--TAAYENVSARLMERLRRKEILDKG 247

Query: 384 ---VKEDYKRLEEFLALGTSMDEI 404
              V E  K+  ++     +M+E+
Sbjct: 248 TGAVLERLKKAWQYAPNQAAMEEL 271


>gi|326405098|ref|YP_004285180.1| putative peptidyl-prolyl cis-trans isomerase SurA [Acidiphilium
           multivorum AIU301]
 gi|325051960|dbj|BAJ82298.1| putative peptidyl-prolyl cis-trans isomerase SurA [Acidiphilium
           multivorum AIU301]
          Length = 427

 Score = 40.7 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 13/150 (8%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           +++V+   L+ L    L  G           S    V    +  +    + +  L  +S 
Sbjct: 2   KSFVSYAALIGLAAGLLAPGAPA---RAQTVSIAAVVNGTVITNADV--AARTRLFALSA 56

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
             G    S   +   L  +I   L+  A   Q IE   +     ++   + R      + 
Sbjct: 57  --GLPTTSATLQR--LKPQITRELIDQALQLQAIERNKVVVPEAKIAAALKRV----NEA 108

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           N         +LA  GI     +  +   +
Sbjct: 109 NHLPPGSLQKKLAAAGIPLSTLVSQFRTQI 138


>gi|149018527|gb|EDL77168.1| laminin, beta 2 [Rattus norvegicus]
          Length = 1801

 Score = 40.7 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 80/278 (28%), Gaps = 22/278 (7%)

Query: 372  ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
               + + +A     E  + L E   + + + E  R+ +                +G+   
Sbjct: 1451 TADLALGRARHTQAELQRALVEGGGILSRVSETRRQAEEAQQRAQAALDKANASRGQVEQ 1510

Query: 432  AIPYKEQLLFRV--FGKDDPLSKDHT---------VALPDGSYMWVQIKESIPARDRKLE 480
            A     +L+  V  F   +    D           +++P       ++   I  R R L 
Sbjct: 1511 ANQELRELIQNVKDFLSQEGADPDSIEMVATRVLDISIPASPEQIQRLASEIAERVRSLA 1570

Query: 481  EVLTDVKKDWKTVKTAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRM 537
            +V T +      V+ AE++   A +         ++ +  +   +    +        R 
Sbjct: 1571 DVDTILAHTMGDVRRAEQLLQDAQRARSRAEGERQKAETVQAALEEAQRAQGAAQGAIRG 1630

Query: 538  DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV------FKVTNSKVGPVQEKDKFI 591
               +       + QV        +     +  +  +       K+  +         +  
Sbjct: 1631 AVVDTKNTEQTLQQVQERMAGTEQSLNSASERARQLHALLEALKLKRAGNSLAASTAEET 1690

Query: 592  SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
            +   Q   ++    +   +  QY       L +R  +G
Sbjct: 1691 AGSAQSRAREAEKQLREQVGDQY--QTVRALAERKAEG 1726


>gi|6981142|ref|NP_037106.1| laminin subunit beta-2 precursor [Rattus norvegicus]
 gi|126371|sp|P15800|LAMB2_RAT RecName: Full=Laminin subunit beta-2; AltName: Full=Laminin chain B3;
            AltName: Full=Laminin-11 subunit beta; AltName:
            Full=Laminin-14 subunit beta; AltName: Full=Laminin-15
            subunit beta; AltName: Full=Laminin-3 subunit beta;
            AltName: Full=Laminin-4 subunit beta; AltName:
            Full=Laminin-7 subunit beta; AltName: Full=Laminin-9
            subunit beta; AltName: Full=S-laminin subunit beta;
            Short=S-LAM beta; Flags: Precursor
 gi|57251|emb|CAA34561.1| precursor (AA -35 to 1766) [Rattus norvegicus]
          Length = 1801

 Score = 40.7 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 80/278 (28%), Gaps = 22/278 (7%)

Query: 372  ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
               + + +A     E  + L E   + + + E  R+ +                +G+   
Sbjct: 1451 TADLALGRARHTQAELQRALVEGGGILSRVSETRRQAEEAQQRAQAALDKANASRGQVEQ 1510

Query: 432  AIPYKEQLLFRV--FGKDDPLSKDHT---------VALPDGSYMWVQIKESIPARDRKLE 480
            A     +L+  V  F   +    D           +++P       ++   I  R R L 
Sbjct: 1511 ANQELRELIQNVKDFLSQEGADPDSIEMVATRVLDISIPASPEQIQRLASEIAERVRSLA 1570

Query: 481  EVLTDVKKDWKTVKTAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRM 537
            +V T +      V+ AE++   A +         ++ +  +   +    +        R 
Sbjct: 1571 DVDTILAHTMGDVRRAEQLLQDAQRARSRAEGERQKAETVQAALEEAQRAQGAAQGAIRG 1630

Query: 538  DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV------FKVTNSKVGPVQEKDKFI 591
               +       + QV        +     +  +  +       K+  +         +  
Sbjct: 1631 AVVDTKNTEQTLQQVQERMAGTEQSLNSASERARQLHALLEALKLKRAGNSLAASTAEET 1690

Query: 592  SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
            +   Q   ++    +   +  QY       L +R  +G
Sbjct: 1691 AGSAQSRAREAEKQLREQVGDQY--QTVRALAERKAEG 1726


>gi|226290|prf||1505373A laminin-like adhesive protein
          Length = 1801

 Score = 40.7 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 80/278 (28%), Gaps = 22/278 (7%)

Query: 372  ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
               + + +A     E  + L E   + + + E  R+ +                +G+   
Sbjct: 1451 TADLALGRARHTQAELQRALVEGGGILSRVSETRRQAEEAQQRAQAALDKANASRGQVEQ 1510

Query: 432  AIPYKEQLLFRV--FGKDDPLSKDHT---------VALPDGSYMWVQIKESIPARDRKLE 480
            A     +L+  V  F   +    D           +++P       ++   I  R R L 
Sbjct: 1511 ANQELRELIQNVKDFLSQEGADPDSIEMVATRVLDISIPASPEQIQRLASEIAERVRSLA 1570

Query: 481  EVLTDVKKDWKTVKTAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRM 537
            +V T +      V+ AE++   A +         ++ +  +   +    +        R 
Sbjct: 1571 DVDTILAHTMGDVRRAEQLLQDAQRARSRAEGERQKAETVQAALEEAQRAQGAAQGAIRG 1630

Query: 538  DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV------FKVTNSKVGPVQEKDKFI 591
               +       + QV        +     +  +  +       K+  +         +  
Sbjct: 1631 AVVDTKNTEQTLQQVQERMAGTEQSLNSASERARQLHALLEALKLKRAGNSLAASTAEET 1690

Query: 592  SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
            +   Q   ++    +   +  QY       L +R  +G
Sbjct: 1691 AGSAQSRAREAEKQLREQVGDQY--QTVRALAERKAEG 1726


>gi|320159594|ref|YP_004172818.1| 6-phosphofructokinase [Anaerolinea thermophila UNI-1]
 gi|319993447|dbj|BAJ62218.1| 6-phosphofructokinase [Anaerolinea thermophila UNI-1]
          Length = 328

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 6/132 (4%)

Query: 471 SIPARDRKLEEVLTDVKKDWKTVK------TAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
            IP  +   +EV   V+  +K  K       AE     AN+L  +  +    F      L
Sbjct: 197 IIPEYETPFKEVAEAVEDAYKRGKSHCIIVVAEGAKLNANELAAKLQEMNVGFDTRVTVL 256

Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
           G                  FG   I  + SG   ++      +     +  V N++    
Sbjct: 257 GHVQRGGKPTAFDRFLATRFGVKAIEFLLSGQTGVMTALTGRDITPIPLATVVNNRRTLS 316

Query: 585 QEKDKFISYLTQ 596
           +E  K    L +
Sbjct: 317 EEYIKMARILAR 328


>gi|189461627|ref|ZP_03010412.1| hypothetical protein BACCOP_02286 [Bacteroides coprocola DSM 17136]
 gi|189431657|gb|EDV00642.1| hypothetical protein BACCOP_02286 [Bacteroides coprocola DSM 17136]
          Length = 287

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 83/274 (30%), Gaps = 42/274 (15%)

Query: 136 VFVSRLARE---GIN---EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           ++   L      G+       + + Y     +  ++     G  P N+ +D+    Y + 
Sbjct: 37  LYKEDLQAAMPVGMRGQDSARFAEEYIHNWIKDVLLYKKAEGNIPDNVKVDELVASYRKA 96

Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
             +        +     + S+A + Q++ +    + A +       +      +    + 
Sbjct: 97  LIMHTYQEELVNQKLGNEISDAEIEQYYNQNTGMFSANQPYVQGLFMKVPISAQHLNNV- 155

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
               +A Y+KN        I  +E+    N    D  +          ++A +      D
Sbjct: 156 ----RAWYKKN----TQDAIDKLEKFSIGNAVSYDYFYDRW---IPVSEIAAKIPLKAID 204

Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVK 368
                 ++    +                  V   ++ Y + HV N  P+   +  +  K
Sbjct: 205 TDANYLNRNRNVE------------------VRDTAYCYFL-HVENFLPAGQQLPLEYAK 245

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            +I   +   K  E       R+++ L    S D
Sbjct: 246 SEIKEILINLKRVE----FINRMKDDLYKEASDD 275


>gi|260589950|ref|ZP_05855863.1| hypothetical protein BLAHAN_07060 [Blautia hansenii DSM 20583]
 gi|260539757|gb|EEX20326.1| hypothetical protein BLAHAN_07060 [Blautia hansenii DSM 20583]
          Length = 365

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 7/120 (5%)

Query: 278 PNQKEADEAFQSLKKGKKFI-----QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
             + +A      L             LA+E  ++LS +     +++ + D  L ++  +L
Sbjct: 206 EKKAQAQSVLDKLLASDDPAMADVDTLAKEVDENLSALDTTFGAEDTLLDEKLLEAAKTL 265

Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                +  V+ G   Y +  +  +           K+ I N+ +     + + E  ++ E
Sbjct: 266 QDGQVYESVVEGENAYYVVRMDQVLDREAT--DAEKEQIVNERKQEAYQKLLDEWKEKAE 323


>gi|38197240|gb|AAH26018.2| LAMB1 protein [Homo sapiens]
          Length = 1083

 Score = 40.4 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 35/310 (11%), Positives = 102/310 (32%), Gaps = 34/310 (10%)

Query: 327  DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
            D + +LA+    + ++  +           K S       +K +   + ++ K++E+++ 
Sbjct: 747  DVLSALAEVEQLSKMVSEAK----LRADEAKQSAEDIL--LKTNATKE-KMDKSNEELRN 799

Query: 387  DYKRLEEFLA-LGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
              K++  FL      +D I +   +++ +++P      +++       +    Q+   + 
Sbjct: 800  LIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRERVESLSQVEVILQ 859

Query: 445  GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
                 +++   + L +         +     D     V   +++  K    AE+   +A+
Sbjct: 860  HSAADIARAEML-LEEAKRASKSATDVKVTADM----VKEALEEAEKAQVAAEKAIKQAD 914

Query: 505  Q-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
            +           +  E +   +   +  + +        ++ R   +N          V+
Sbjct: 915  EDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELKRKAAQNSGEAEYIEKVVY 974

Query: 554  SGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLD------ 604
            +            +G     +K      +K        +  + + Q   K LL       
Sbjct: 975  TVKQSAEDVKKTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQNEAKTLLAQANSKL 1034

Query: 605  SVIAYLKSQY 614
             ++  L+ +Y
Sbjct: 1035 QLLKDLERKY 1044


>gi|303327131|ref|ZP_07357573.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863119|gb|EFL86051.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
          Length = 373

 Score = 40.4 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 77/274 (28%), Gaps = 29/274 (10%)

Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
           D A          DY   +     A      A        +       +   +S      
Sbjct: 98  DAALDLAVAQVRGDYEPGDLSRFLADESLDEADWQALMRDHLAMLTFEKRVLLS------ 151

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
                 I +  DE++A Y +++  +  PE   +  +    +   D    +   G+     
Sbjct: 152 -----GIRVGLDEVRAYYREHQADFQLPETLDLCLISGEERAALDVFCAAFPAGR----- 201

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
            +     L    L     + +P     D+  S+ K G   P    +  +    +   + +
Sbjct: 202 -KTPRSDLLVQCL-EVRGDEVPPPWNKDT--SVLKPGACAPARRQNGSWQTVALVERQKA 257

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
            ++   +    I + +   K +   ++  +          S+     +   +  +  L  
Sbjct: 258 HSLDMADAYPLIEHILLEQKKNAAFEQWLE---------GSLSRAVIKVSPLLKEELLTP 308

Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
            +G+ V+  E      +   +    G D      
Sbjct: 309 ASGRQVQPNENDDEEVRTDAVDAAPGPDAASGGQ 342


>gi|148261608|ref|YP_001235735.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
           JF-5]
 gi|146403289|gb|ABQ31816.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
           JF-5]
          Length = 427

 Score = 40.4 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 13/150 (8%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           +++V+   L+ L    L  G          +S    V    +  +    + +  L  +S 
Sbjct: 2   KSFVSYAALIGLAAGLLAPGAPA---RAQTASIAAVVNGTVITNADV--AARTRLFALSA 56

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
             G    S   +   L  +I   L+  +   Q IE   +     ++   + R      + 
Sbjct: 57  --GLPTTSATLQR--LKPQITRELIDQSLQLQAIERNKVVVPEAKIAAALKRV----NEA 108

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKML 159
           N         +LA  GI     +  +   +
Sbjct: 109 NHLPPGSLQKKLAAAGIPLSTLVSQFRTQI 138


>gi|326778877|ref|ZP_08238142.1| putative lipoprotein [Streptomyces cf. griseus XylebKG-1]
 gi|326659210|gb|EGE44056.1| putative lipoprotein [Streptomyces cf. griseus XylebKG-1]
          Length = 218

 Score = 40.4 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 41/142 (28%), Gaps = 6/142 (4%)

Query: 35  FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
            + S       VG +++  S+  +          Q+          +S  L++  L  L+
Sbjct: 26  GNQSHPGAAAVVGGERIEVSTVQDRAADVRSA--QENSPEAAQLVNKSGQLNRAKLHGLI 83

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
            G  LD+   D G+      +      S    G + +F        L +  +   +    
Sbjct: 84  FGRILDRAAADAGVAVTRKEIQEMRKASGAQQGGEERFEA----MMLQQRWVAPDQIDAD 139

Query: 155 YTKMLSRTDVVGMFVGGMRPSN 176
             + +    +       +    
Sbjct: 140 MRQEVQLPKLAEALGADLGTPA 161


>gi|15891942|ref|NP_359656.1| cell surface antigen [Rickettsia conorii str. Malish 7]
 gi|81528578|sp|Q92JP8|SCA1_RICCN RecName: Full=Putative surface cell antigen sca1; Flags: Precursor
 gi|15619052|gb|AAL02557.1| cell surface antigen [Rickettsia conorii str. Malish 7]
          Length = 1902

 Score = 40.4 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 101/319 (31%), Gaps = 49/319 (15%)

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRI----TKASEKVKEDYKRLEEFLALGTSMDEISR 406
             ++ +  +   + ++ K+ +           K +EK+K   + +E  + +G + D+I +
Sbjct: 300 IKLAEVTQAIDTTDKKDKERLQKLYTQLTSTQKTTEKLKSRAEEIETKIKIGENKDKIKK 359

Query: 407 REK----------------------IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
            EK                         + +   +         EV+A   ++  +    
Sbjct: 360 LEKELTSKNNKADRLFQKIEKIDIPANKVSIKSQETVPVTTASTEVSAFQAQQARINEAR 419

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
                 +K        G     +   +   R++K +E    + +  K  K  +  S KA 
Sbjct: 420 QGVFNKNKSS------GGNA--RKSSAGTKREKKKQEAQKQLSEIKKQEKAIKTASDKAK 471

Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY----DGISQVFSGPVEMV 560
           ++     KE  +   +          + Q+N+++   K              +    +  
Sbjct: 472 EVAASAKKE-TSRTALRAMQDKMNGDSEQLNKIEENLKLLTPVVYNSSTGPTYKQSPKAT 530

Query: 561 KCFPIENGLSYVV----------FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
              P+ +G+  ++                +  P QE +  I   ++ + +  +   I YL
Sbjct: 531 PTIPLSHGVQRILGEQPEDEEGYLVPIKVQQQPYQEIEDPIPSHSKDIYEAKVSQYINYL 590

Query: 611 KSQYSVTVHDNLIQRYLDG 629
            S      +   I   +DG
Sbjct: 591 NSIQPNQSNQAQIDSVIDG 609


>gi|23465058|ref|NP_695661.1| hypothetical protein BL0464 [Bifidobacterium longum NCC2705]
 gi|23325667|gb|AAN24297.1| narrowly conserved hypothetical protein [Bifidobacterium longum
            NCC2705]
          Length = 1966

 Score = 40.4 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 112/345 (32%), Gaps = 36/345 (10%)

Query: 195  IVLNNRHVPAIADPSNAV--LTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIE---I 248
            I L           ++A    T  ++  K ++ A E    +   +     +         
Sbjct: 1625 ITLTLADGTTKDVVTDAEFSTTTMWQ--KASFDAVENVTAVRLTVLSSAGQSDSQANKFA 1682

Query: 249  SNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL--AEEQGK 305
            S  EL+   ++  E+   +P+   +         +A+   +S    + +  L  A E  +
Sbjct: 1683 SAAELRLTTDREVEEETVAPDKTDLN----DTIAKANGLKESDYTAESWTALVKAREAAQ 1738

Query: 306  SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
            +++D    +     +   +L  +I  L K G+         G V  + ++++ +   + +
Sbjct: 1739 AVADNDKATAYDVALALTNLESAIAGLEKTGEEPGP-----GPVEVNKTDLQTAVNKASK 1793

Query: 366  EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
              K D         A E +K   + L+   A    +D      +     L        + 
Sbjct: 1794 LEKADYTTNSWEAFA-EALKAAQQVLDNKNATQQDVDTALSALQDAISKLEATAEPKPNP 1852

Query: 426  KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            +   V         + +    +  L  D +          ++      A  +K  EV  +
Sbjct: 1853 E-PGVVDKAALNATINKAAAINLGLYTDDSAN-------ALR------AALKKAREVSDN 1898

Query: 486  VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 K V  A E   KA   +++ +   K   ++  N G+ + T
Sbjct: 1899 SNATQKQVDAAREALEKAIAGLVKRTAA-KGDGNVVSNTGSDVAT 1942


>gi|194335718|ref|YP_002017512.1| hypothetical protein Ppha_0584 [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308195|gb|ACF42895.1| conserved hypothetical protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 129

 Score = 40.4 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 9/87 (10%)

Query: 27  IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD 86
           I G S      S       V   ++        +++              +  +      
Sbjct: 14  IAGCSPHAGDGSDGRVAAVVNGVEITQREVDFLYQR---------ASAPGASESVKRDQR 64

Query: 87  KKILDNLVSGATLDQFIEDIGLEADHG 113
           + IL  LV    L Q    + L+    
Sbjct: 65  RSILAGLVRAELLAQQAAKMKLDQSPE 91


>gi|312373598|gb|EFR21309.1| hypothetical protein AND_17225 [Anopheles darlingi]
          Length = 1682

 Score = 40.4 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 120/376 (31%), Gaps = 38/376 (10%)

Query: 268  EIRTVE-QLVFPNQKEADEAF-QSLKKGKKFIQLA----EEQGKSLSD-ISLGSFSKEYI 320
            E R VE Q +  N  ++ E   + + +G +   LA    +E  + L D + L        
Sbjct: 1169 EERLVEVQKLLDNADQSLEVTNRKISQGGQNATLANGKIQEARRQLDDAVELLQTEGNTA 1228

Query: 321  PDVSLADSIFSLAKKGDFTPVIHGSFGYVI-------AHVSNIKPSFTVSFQEVKKD--- 370
               +   S     +    + +   +  Y         A++   + +   + + +KK    
Sbjct: 1229 LGRAREISGHLGNQTNQISGISREARQYADRFKAEADANMKQAQEAQEKALEALKKANNA 1288

Query: 371  IANQ--MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
            IA Q  +    A+    E   ++   L   + + + +        D  L  FA  +    
Sbjct: 1289 IAQQSNVTKELAATVATEIA-QVRNKLNAVSKLTDQALTRAREVNDEALTLFAAVNRTTP 1347

Query: 429  EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEV-LTD 485
                I   ++       + D L+++ T  +   S +   + E+I          E+   +
Sbjct: 1348 PNIDINQIKKEAAAYNREADRLAEELTSKIDGNSKLLNNVVENIQLAEALLSRAEIQKEE 1407

Query: 486  VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
                 K ++ A+E++ KA         EG       +    +  T         E+    
Sbjct: 1408 AVTALKQLQYAKELAEKA-------VAEG---DGTLRKANYTYHTLAGFKNQVEESSKRA 1457

Query: 546  YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605
             D ++ V +   +M     +       +     S      E  +  + + Q    +    
Sbjct: 1458 NDALALVPNIERQMQVSLELLEAAEGAL-----SAASRNAEDARKNAQVAQDKYAEEASK 1512

Query: 606  VIAYLKSQYSVTVHDN 621
            +   +K + + T +  
Sbjct: 1513 LAESIKKRANATKNTA 1528


>gi|255595692|ref|XP_002536368.1| conserved hypothetical protein [Ricinus communis]
 gi|223519931|gb|EEF26015.1| conserved hypothetical protein [Ricinus communis]
          Length = 155

 Score = 40.4 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 14/97 (14%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
           + V  LI G  +   +V  +  +  V    +               + +++G        
Sbjct: 7   IIVVALILGGCNKSQNVEDAQVLARVNGNDITIQQLHAELPNASLTLDKQVG-------- 58

Query: 81  RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
                 ++IL  L+    L Q    + L+     +  
Sbjct: 59  ------QQILSRLIERQLLMQEAVKLNLDRTPEVMQA 89


>gi|118370926|ref|XP_001018663.1| hypothetical protein TTHERM_00289470 [Tetrahymena thermophila]
 gi|89300430|gb|EAR98418.1| hypothetical protein TTHERM_00289470 [Tetrahymena thermophila SB210]
          Length = 2011

 Score = 40.4 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 17/121 (14%)

Query: 48   RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK------KILDNLVSGATLDQ 101
             Q     S  ++ +  +  +SQ+IG ++N +   +    +       ++  LV+  +L  
Sbjct: 1604 DQSTSLVSDNSTIQATIVQLSQQIGNLLNLDALPNENQKQFNGSNILVVSQLVTNQSLY- 1662

Query: 102  FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
                             I + P F  K N+     +        +NE+ + D   ++   
Sbjct: 1663 ----------DSTWQSNIQQLPPFQEKLNQVYQVSYKQYNKNLYMNEQPFQDFLKEIQKN 1712

Query: 162  T 162
             
Sbjct: 1713 Q 1713


>gi|15888445|ref|NP_354126.1| hypothetical protein Atu1105 [Agrobacterium tumefaciens str. C58]
 gi|15156137|gb|AAK86911.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 315

 Score = 40.4 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 19/145 (13%)

Query: 23  VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
           VP  +   +   F+ S    V  V +  +       + +     + ++ G          
Sbjct: 21  VPMAVVPYAGQAFADSTVKIV--VNKTPITNDDI--ARRVAFLKLQRQSG---------- 66

Query: 83  VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142
             L++K  + LV  A   + I  + +      V    AR   F G +NK   +     LA
Sbjct: 67  -NLNEKAREQLVDEALKREEIARVKMSVSTQDVDAAFAR---FAG-NNKMKPEQLTKVLA 121

Query: 143 REGINEKEYIDHYTKMLSRTDVVGM 167
           + G+  + +       +S   +V  
Sbjct: 122 QAGVGAEHFKAFIAVQMSWPRLVNA 146


>gi|195119420|ref|XP_002004229.1| GI19806 [Drosophila mojavensis]
 gi|193909297|gb|EDW08164.1| GI19806 [Drosophila mojavensis]
          Length = 487

 Score = 40.4 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 42/138 (30%), Gaps = 20/138 (14%)

Query: 53  FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA-----TLDQFIEDIG 107
                   + E+  + +     + ++  + +   K++L+  +         L +   +  
Sbjct: 308 QPELQERTRAEIKRVLKANDGQLTTDGLKQLSYTKQVLNETLRLHTPYPFLLRRATREFE 367

Query: 108 LEADHGRVWG---------EIARSPLFHGKDNKFSHDVFV--SRLAREGINEKEYIDHYT 156
           L      +            I R P  + +  +F  + F   + L R  ++   +     
Sbjct: 368 LTESVFVIARGNNVVIPVAAIHRDPNIYVEPERFDPERFRPEAVLKRPAMSFLPFGQGLR 427

Query: 157 ----KMLSRTDVVGMFVG 170
               K L+   ++   V 
Sbjct: 428 GCIAKQLAEQQLLIGLVA 445


>gi|268593502|ref|ZP_06127723.1| ATPase [Providencia rettgeri DSM 1131]
 gi|291310925|gb|EFE51378.1| ATPase [Providencia rettgeri DSM 1131]
          Length = 1645

 Score = 40.4 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 75/247 (30%), Gaps = 25/247 (10%)

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           +++++          +  +    +  D  +L NL++  + +   +   +     +++ ++
Sbjct: 618 FEEQIEKAQNSAQLDIPMKDMEKMSADLDMLSNLMASLSFNDVTQQTHIIDAISQIYAQL 677

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGI--NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
            +           S      +   +       ++   +   L    +             
Sbjct: 678 NQ-----------SRARLQQKRKSQNNVETVAQFGAQFR--LFSQGITNAL-SLATDPER 723

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
             DQ  R   +   ++    ++             L + FE +K        +R   ++ 
Sbjct: 724 CDDQLSRLLVQLEELESQFSSHDEFLDDILAKREELLETFESHKQVLIDDRQRRAQNLVT 783

Query: 238 DVHEKEKKIE------ISNDELQAEYEKNKEKYFSPEIRTVEQL-VFPNQKEADEAFQSL 290
                   ++       S DEL A +  +     + EI  +E+L    +  +AD+    L
Sbjct: 784 AADRLLDSLQRRTTRLQSQDELNAFFASDPLALKTREI--IEKLREINDNVKADDIDARL 841

Query: 291 KKGKKFI 297
           K  +   
Sbjct: 842 KSSRDQA 848


>gi|194209474|ref|XP_001915354.1| PREDICTED: laminin, beta 1 [Equus caballus]
          Length = 1711

 Score = 40.4 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 68/574 (11%), Positives = 171/574 (29%), Gaps = 108/574 (18%)

Query: 113  GRVWGEIARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
              +   +A+SP         N F                ++     T+ +++ +V     
Sbjct: 1153 SEIRDILAQSPAAEPLKNIGNLFEEA-------------EKLTKDVTEKMAQAEVT--LA 1197

Query: 170  GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNY 224
                 SN    +      E  S+D  V            S+       +T++F+    + 
Sbjct: 1198 DTASQSNSTAKELDALQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITKYFQM---SL 1254

Query: 225  RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             A E    S    D     ++   + D+++A   + + ++   +      L        D
Sbjct: 1255 EAEERVNASTT--DSSSTVEQSAFTRDKVEALIVEGESQFRENQEEQAGLL--------D 1304

Query: 285  EAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS------------------------- 314
            E    L+        AE       G S S+   G                          
Sbjct: 1305 ELAGKLQS-LDLSAAAEMTCGTPPGASCSETECGGPNCRTDDGQKKCGGPGCGGLVTVAH 1363

Query: 315  --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              + K    D    D + +LA+    + ++  +           K +       +K +  
Sbjct: 1364 SAWQKAMDFD---RDVLSALAEVEQLSKMVSEAK----LRADEAKQNAQDVL--LKTNAT 1414

Query: 373  NQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEV 430
             + ++ K++E +++  K++  FL      +D I +   +++ +++P      +++     
Sbjct: 1415 KE-KVDKSNEDLRDLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIR 1473

Query: 431  AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
              +    Q+   +      +++   + L +         +     D     V   +++  
Sbjct: 1474 ERVESLSQVEVILQQSAADIARAEML-LEEAKRASKSATDVKVTADM----VKEALEEAE 1528

Query: 491  KTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            K    AE+   +A++           +  E +   +   +  + +        ++ R   
Sbjct: 1529 KAQIAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELKRKAA 1588

Query: 540  ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQ 596
            +N          V++            +G     +K      +K        +  + + Q
Sbjct: 1589 QNSGEAEYIEKVVYTVKQSADDVKKTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQ 1648

Query: 597  MMNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
               K LL        ++  L+ +Y    +   ++
Sbjct: 1649 NEAKTLLAQANSKLQLLKDLERKY--EDNQKYLE 1680


>gi|260428595|ref|ZP_05782574.1| ppic-type ppiase domain protein [Citreicella sp. SE45]
 gi|260423087|gb|EEX16338.1| ppic-type ppiase domain protein [Citreicella sp. SE45]
          Length = 410

 Score = 40.4 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 5/109 (4%)

Query: 89  ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
             + LV      Q  ++ G+E     +         F G+  + S + FV+ L R G+ E
Sbjct: 69  AREQLVDDRLRLQAAQNAGIEPTEEEILD---GMSEFAGRA-QLSREEFVTALGRAGVAE 124

Query: 149 KEYIDHYTKMLS-RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
           + + D      + R+ V   FV   + S   +D+A      + +V  ++
Sbjct: 125 QTFRDFVRAGAAWRSLVQSRFVQQSQVSPAEVDRALAGNGGSSTVRVLL 173


>gi|167525727|ref|XP_001747198.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774493|gb|EDQ88122.1| predicted protein [Monosiga brevicollis MX1]
          Length = 198

 Score = 40.4 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 15/135 (11%), Positives = 36/135 (26%), Gaps = 45/135 (33%)

Query: 262 EKYFSPEIRTVEQLVFP-----------------NQKEADEA----FQSLKKGKKFIQLA 300
            +   P       ++                    + EA E      +++ +G  F ++A
Sbjct: 60  AQSSGPSKVRASHILAKHRDSRRPSSWRQNTITRTKAEAIEIIKRHREAIAQGADFAKIA 119

Query: 301 E---EQGKSLSDISLGSFSKEYI---------------------PDVSLADSIFSLAKKG 336
           E   +   +     LG+F +  +                      +    +      K G
Sbjct: 120 ETESDCSSAKRGGDLGAFGRGQMQTTDVMTPGSHTTCLASPCFPANAEAFEKAAFALKVG 179

Query: 337 DFTPVIHGSFGYVIA 351
           + + ++    G  I 
Sbjct: 180 ELSDLVDTDSGIHII 194


>gi|89054302|ref|YP_509753.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Jannaschia sp. CCS1]
 gi|88863851|gb|ABD54728.1| PPIC-type PPIASE domain [Jannaschia sp. CCS1]
          Length = 422

 Score = 40.4 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 26/185 (14%)

Query: 5   IRKASRTWVAKIFLVV---LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
           +R+ +R W A  FL +   L  PF          + +  S  V V    V          
Sbjct: 11  LRQMTRLWSALTFLCLGCALSAPF-----GGQAHAQNPFSAAVEVNDTIVTNFEI----- 60

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
            +     Q +    +        L ++ ++ LV+          +G EA    +      
Sbjct: 61  GQRIRFLQVLNAQGD--------LREQAIEALVNERLQLDAALAVGAEASPEAIE---TG 109

Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDVVGMFVGGMRPSNLLLD 180
              F G+ N    + F+ ++A+EGI  +   D     ++ R  V   F   +  +   ++
Sbjct: 110 LEEFAGRAN-LGPEQFLRQMAQEGIAPETVRDFVANGITWRNVVRARFGPTIDITEEDVE 168

Query: 181 QAKRF 185
           +A   
Sbjct: 169 RALEL 173


>gi|307151228|ref|YP_003886612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cyanothece sp. PCC
           7822]
 gi|306981456|gb|ADN13337.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cyanothece sp. PCC
           7822]
          Length = 247

 Score = 40.4 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 56/145 (38%), Gaps = 20/145 (13%)

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLA----EEQGK 305
           D++ A + +N+  Y       + ++V  ++  A E F  +++G+  F ++A     EQ  
Sbjct: 102 DKIDAYFFQNQLDYGG---VVMYEVVLEDKDLALELFYGIQEGEMSFYEVAHQYIAEQEL 158

Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
                 LG  +++ +    ++  +F+          I  S G  +  V  I         
Sbjct: 159 RRKCGYLGMVNRKNL-KPEISAVVFAANPP-QVLKPIITSKGVHLILVEEI--------- 207

Query: 366 EVKKDIANQMRITKASEKVKEDYKR 390
            VK ++   +    A++   +  K 
Sbjct: 208 -VKPELNQNLARKIAADLFTDWLKE 231


>gi|160903111|ref|YP_001568692.1| hypothetical protein Pmob_1675 [Petrotoga mobilis SJ95]
 gi|160360755|gb|ABX32369.1| hypothetical protein Pmob_1675 [Petrotoga mobilis SJ95]
          Length = 335

 Score = 40.4 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 10/134 (7%)

Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSF 315
           Y+ N+  Y S     ++ ++F + ++A   +  + +G   + ++ E+   +       + 
Sbjct: 186 YQSNQAIYKSDPAADIKLIIFNSTEDASYTYNRIIEGYYTYDEVFEQTDSAT------TM 239

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGS---FGYVIAHVSNIKPSFTVSFQEVKKDIA 372
             +   D +           G  T  +        Y +  +    P   ++F E K  I 
Sbjct: 240 RIDLKDDSNSLVQTVKANPPGFITTPLLYDAKNGTYALLKIERKYPEKKLTFDEAKDQII 299

Query: 373 NQMRITKASEKVKE 386
             ++  KA E   +
Sbjct: 300 FNLKDKKAQEYFDK 313


>gi|332877716|ref|ZP_08445457.1| hypothetical protein HMPREF9074_01192 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332684296|gb|EGJ57152.1| hypothetical protein HMPREF9074_01192 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 916

 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 82/214 (38%), Gaps = 17/214 (7%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
            A L    +  K+  +      I      V E  KK  +S++++Q  Y+  +E+    + 
Sbjct: 438 EAELKT--KSNKEVLQT----NIKTNSEKVEELNKKAGLSDEQIQQ-YKSIQEQQQENQK 490

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL-ADS 328
           R    L+  +  + +   Q L K  +   L E +   L  I    F   Y   +    DS
Sbjct: 491 RR--DLLNSDFSQTNAFLQELNK--ELSNLQERKNTFLQSIHKNEFRGYYQDKLKFIDDS 546

Query: 329 IFSLAKKGDFTPVIH--GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           I  L  +G  + +     S G  I +  NI           K +I  +++  + +E +K+
Sbjct: 547 IVQL--QGLISEIGTIINSEGKRIFNTDNIFKEELKQINYEKSNIEEELKPYQQNEDIKK 604

Query: 387 DYKRLEEFLAL-GTSMDEISRREKIVSIDLPLVD 419
             + LEEF+   G  + EI    K +      ++
Sbjct: 605 QIRTLEEFIENDGKLLSEIDSLNKKIEEKRQSIE 638


>gi|297459157|ref|XP_001790228.2| PREDICTED: laminin, beta 2 [Bos taurus]
          Length = 1803

 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 84/290 (28%), Gaps = 36/290 (12%)

Query: 373  NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
              + + +A     E  + L E   + + + E  R+                  +G+   A
Sbjct: 1454 ADLALGRARHTQAELQRALAEGGGILSQVAETRRQAGEAQQRAQAALDKAHASRGQVEQA 1513

Query: 433  IPYKEQLLFRV--FGKDDPLSKDHT---------VALPDGSYMWVQIKESIPARDRKLEE 481
                 QL+  V  F   +    D           +++P       Q+   I  R R L +
Sbjct: 1514 NQELRQLIQNVKDFLSQEGADPDSIEMVATRVLELSIPASPEQIQQLAGEIAERVRSLAD 1573

Query: 482  VLTDVKKDWKTVKTAEEV--------------SSKANQLVLEYSKEGKNF-RDIGKNLGA 526
            V T + +    V+ AE++                KA  +     +  +      G   GA
Sbjct: 1574 VDTILARTVGDVRRAEQLLNDARRARSRAEGEKQKAETVQAALEEAQRAQGAAQGAIQGA 1633

Query: 527  SLLTTNQIN-------RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
             + T +          RM          G          +++   ++   + +       
Sbjct: 1634 VVDTQDTEQTLHQVQERMAGAEXALSSAGERA--QQLDGLLEALKLKRAGNNLAASSAEE 1691

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY-SVTVHDNLIQRYLD 628
              G  Q++ +    L Q    D   +V A  + +   V       ++  D
Sbjct: 1692 TAGSAQDRAREAEQLLQGPLGDQYQTVRALAERKAQDVLAAQARAEQLRD 1741


>gi|167519250|ref|XP_001743965.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777927|gb|EDQ91543.1| predicted protein [Monosiga brevicollis MX1]
          Length = 111

 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 294 KKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           KKF ++A    + G +     +G+F+ E I      D++  L +  + + V+H   G  I
Sbjct: 49  KKFEEIAAVESDCGSAAQGGDIGTFTAEEIQKP-FFDAVAGL-EVNEISQVVHTDSGSHI 106

Query: 351 AH 352
             
Sbjct: 107 IQ 108


>gi|86742606|ref|YP_483006.1| hypothetical protein Francci3_3927 [Frankia sp. CcI3]
 gi|86569468|gb|ABD13277.1| hypothetical protein Francci3_3927 [Frankia sp. CcI3]
          Length = 239

 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 41/153 (26%), Gaps = 7/153 (4%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG---LDKKILDNLVSG 96
           +     VG Q +  S       + L           +   ++S+    L ++ L  LV  
Sbjct: 11  AGAAAQVGSQTIGTSQLRGIVDRGLKAAQTVPIPQTSQSASQSLNRGELQRRTLTTLVQL 70

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
             +    + +G+      +        +        S   F  R A  G  +++      
Sbjct: 71  ELISGEAKRLGISLTGQDIASYYQAYAILQFG----SVKAFEQRAAAAGFAQQDVATIVR 126

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
                + +      G+  S+           + 
Sbjct: 127 SGAFESALGDKISPGVLASDADTRAQYDSIVDQ 159


>gi|255264369|ref|ZP_05343711.1| ppic-type ppiase domain protein [Thalassiobium sp. R2A62]
 gi|255106704|gb|EET49378.1| ppic-type ppiase domain protein [Thalassiobium sp. R2A62]
          Length = 404

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 54/176 (30%), Gaps = 18/176 (10%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           S  + V  + +                ++ +G +          L +   + L+      
Sbjct: 27  SPAIIVNDEVITRYELDQR--------AKLLGVLRTP-----GNLSELAQEQLIEDRLKA 73

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           + I + GL+     +   ++    F G+ N      F   L + G+ ++   D     +S
Sbjct: 74  RLIRNAGLQLTGDGLQQALSD---FAGRAN-LDLATFTQVLNQNGVEQETLRDLVATGVS 129

Query: 161 -RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
            R  +   +    + ++  +D+A         +  ++            ++A    
Sbjct: 130 WREYIRTRYGNRAQITDNEIDRALSSTGGRAGIRVLISEIIMDARPQVATSAQARA 185


>gi|171779578|ref|ZP_02920534.1| hypothetical protein STRINF_01415 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281680|gb|EDT47114.1| hypothetical protein STRINF_01415 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 352

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 63/214 (29%), Gaps = 23/214 (10%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +V M    +  S+           +   ++ ++            S+  +T+ +     +
Sbjct: 48  LVTMKGNTITVSDFYNAAKSTSSSQQTMLNLVLSRVFEDQYGDKVSDKDVTKAYNTTASS 107

Query: 224 Y------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
           Y               +  +       + E   K    +      Y+   + Y +    T
Sbjct: 108 YGSSFPSALQAAGLTTDTYKQQIRTSMLVEYAVKEAAKDKLTTKNYKDAYKDYNADTTAT 167

Query: 272 VEQLVFPNQKEADEAF-QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
           V  +   ++ +A+    Q+   G  F ++A+E   +         S +      +  + F
Sbjct: 168 V--IALTDEDKANSVHNQATADGADFDKIAKEN-TTAKKTEYTFDSADTKLPSDVMAAAF 224

Query: 331 SLAKKGDFTPVIHG------SFGYVIAHVSNIKP 358
               +G  + VI        S+ Y I   +    
Sbjct: 225 K-QDEGSVSDVIKVMNSSTYSYTYYIVKTTKKTE 257


>gi|239981770|ref|ZP_04704294.1| lipoprotein [Streptomyces albus J1074]
          Length = 261

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/197 (11%), Positives = 54/197 (27%), Gaps = 32/197 (16%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSS--------------------FI 57
           L ++    +   L  A  + +       VG +++  +                     + 
Sbjct: 9   LALMAATLVAAPLLTACGADARPGAAAVVGGERITVAQLEAQVGQVRDAQVAVLGEEGYA 68

Query: 58  NSWKQELGMISQKIGFVVNSERARSVGL---------DKKILDNLVSGATLDQFIEDIGL 108
           ++  Q+     Q      ++  A+   +         D+  L  ++S   + +  ++ G+
Sbjct: 69  DALDQQCSAARQAELQQRDASAAQGEKVVEGRETCAPDRSTLAGMISERVVKEAADEAGI 128

Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
                 +     R      +    +  +  + L   GI      DH    L    +   +
Sbjct: 129 SPTRKELRE---RRAQLQEQTGGTAEQLEEAYLRTYGIPAARIDDHLAYQLRLDGLRQKY 185

Query: 169 VGGMRPSNLLLDQAKRF 185
             G  P        K  
Sbjct: 186 APGTSPEQADTQVRKEL 202


>gi|213024737|ref|ZP_03339184.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 88

 Score = 40.0 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
              V    K  K  ++    A +L++E  K GK    + K  G S      ++R   +  
Sbjct: 2   KEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQD-- 57

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
                  +   S P +    + + N +   V 
Sbjct: 58  --PVSQAAFALSLPTKDKPVYGVANDMQGNVV 87


>gi|322688348|ref|YP_004208082.1| endo-alpha-N-acetylgalactosaminidase [Bifidobacterium longum subsp.
            infantis 157F]
 gi|320459684|dbj|BAJ70304.1| endo-alpha-N-acetylgalactosaminidase [Bifidobacterium longum subsp.
            infantis 157F]
          Length = 1965

 Score = 40.0 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 114/344 (33%), Gaps = 35/344 (10%)

Query: 195  IVLNNRHVPAIADPSNAVL-TQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIE---IS 249
            I L           ++A   T  ++  K ++ A E    +   +     +         S
Sbjct: 1625 ITLTLADGTTKDVVTDAEFSTTMWQ--KASFDAVENVTAVRLTVLSSAGQSDSQANKFAS 1682

Query: 250  NDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL--AEEQGKS 306
              EL+   ++  E+   +P+   +         +A+   +S    + +  L  A E  ++
Sbjct: 1683 AAELRLTTDREVEEETVAPDKTDLN----DTIAKANGLKESDYTAESWTALVKAREAAQA 1738

Query: 307  LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
            ++D    +     +   +L  +I  L K G+         G V  + ++++ +   + + 
Sbjct: 1739 VADNDKATAYDVALALTNLESAIAGLEKTGEEPGP-----GPVEVNKTDLQTAVNKASKL 1793

Query: 367  VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
             K D         A E +K   + L+   A    +D      +     L        + +
Sbjct: 1794 EKADYTTNSWEAFA-EALKAAQQVLDNKNATQQDVDTALSALQDAISKLEAATEPKPNPE 1852

Query: 427  GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
               V         + +    +  L  D +          ++      A  +K  EV  + 
Sbjct: 1853 -PGVVDKAALNATINKAAAINLGLYTDDSAN-------ALR------AALKKAREVSDNS 1898

Query: 487  KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                K V  A E   KA   +++ +   K   ++  N GA+++T
Sbjct: 1899 NATQKQVDAAREALEKAIAGLVKRTAA-KGDGNVVSNTGANVVT 1941


>gi|311029962|ref|ZP_07708052.1| hypothetical protein Bm3-1_05291 [Bacillus sp. m3-13]
          Length = 252

 Score = 40.0 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 49/178 (27%), Gaps = 17/178 (9%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V  Q++    +    +Q   M       +   +   +  +  + L+ L+    L
Sbjct: 55  EKVVAKVNGQEIKGQEYNEMLQQTQMM------MMQFGQGGDAKAMKDQTLNALIDQKVL 108

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q +E  G +     +   I          N  S + F   L    +  +      ++ L
Sbjct: 109 SQEVESKGYKTSEKEIEDYIKDIKA-----NYESEEKFEEALEESPLTMETLKAQISEEL 163

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI------VLNNRHVPAIADPSNA 211
           +    +       + ++  + +      E                    P +A+  + 
Sbjct: 164 ALQKYMEKEFPETKVTDEQIKEYYNQAKEQNEAQQAEAPEGEEAPANEFPELAEVEDQ 221


>gi|189235955|ref|XP_001809336.1| PREDICTED: similar to Ank2 CG34416-PI [Tribolium castaneum]
          Length = 5729

 Score = 40.0 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 61/420 (14%), Positives = 140/420 (33%), Gaps = 55/420 (13%)

Query: 189  NRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
             ++ DY V             +  V+    +  +D  +A  Y   S     V + +K IE
Sbjct: 2571 EKTKDYAVEKTEDAKTQGQQITQQVVETTKDVKRDAEKAKAYIE-SVGKQKVDDLDKAIE 2629

Query: 248  IS----NDELQAEY---EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ--SLKKGKKFIQ 298
                  ++E++      ++  +     + R V+ +    +K+ DE  Q   L KG    +
Sbjct: 2630 DMRAKIDEEVKDFQHSTQQKADDLAQVKDRAVKDVETAAKKKIDEMEQTKELVKGA-IEE 2688

Query: 299  LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
              E+ GK+      G      + + S   +     K  + + V   +             
Sbjct: 2689 KVEDFGKTAGQAMNGF---GKVKESSTQAAA---QKIEELSQVKETAG------------ 2730

Query: 359  SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
                   EVK +IA       A  KV +  ++  +F+     + E ++    ++  +   
Sbjct: 2731 ---AKLDEVKDEIAVA-----AKGKVDDMAQKSSKFVDNLAKVKEEAKE--KITQKIDAK 2780

Query: 419  DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
                KD   +++  +   +++      K + L+++        +    ++ ++       
Sbjct: 2781 AKDIKDAVSQKIVDVDKTDKIFKTTTKKVEDLTEEAVNGFQKTTQKLSKVDKTKEEAIAD 2840

Query: 479  LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN-FRDIGKNLGASLLTTNQINRM 537
            L ++                     +QLV + +K  ++   D+ +   +   T++QI   
Sbjct: 2841 LSKLKDSASGTL-------------SQLVTDTAKSKESAIEDLMRIEQSLKDTSSQIAGE 2887

Query: 538  DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV-QEKDKFISYLTQ 596
             ++      D         ++ ++          V+ K  + K   +  E  K  S L Q
Sbjct: 2888 LSKGTSEKVDDFQAARQKAIDDIEKIKSSTKADAVIKKEVDQKKKELDDELSKLASSLEQ 2947


>gi|222085450|ref|YP_002543980.1| peptidyl-prolyl cis-trans isomerase protein [Agrobacterium
           radiobacter K84]
 gi|221722898|gb|ACM26054.1| peptidyl-prolyl cis-trans isomerase protein [Agrobacterium
           radiobacter K84]
          Length = 316

 Score = 40.0 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 51/182 (28%), Gaps = 17/182 (9%)

Query: 10  RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
           +T +  +      +    + +  +  + + S   V V    +       + +     +  
Sbjct: 5   KTPMRAVLFGAAALIMATFAMPSSDVAFAASEVKVVVNNSVITSGDI--AKRINFLKLQH 62

Query: 70  KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
           + G            L+K   + LV        I  + +      V     R        
Sbjct: 63  QKGD-----------LNKLAQEQLVDETLKRAEISRVRMSVSTSDVDSAFGRFAA----S 107

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           NK S       L + G+    +  +    +S   VV    G    + L  D       EN
Sbjct: 108 NKMSPQQLGQILDKMGVGVDHFKSYIAVSMSWPRVVNARFGSSGGNKLSNDDLVTRMTEN 167

Query: 190 RS 191
           ++
Sbjct: 168 KT 169


>gi|222153359|ref|YP_002562536.1| foldase protein PrsA 1 [Streptococcus uberis 0140J]
 gi|222114172|emb|CAR42691.1| foldase protein PrsA 1 precursor [Streptococcus uberis 0140J]
          Length = 314

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 79/246 (32%), Gaps = 32/246 (13%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T VV M    +  ++   +       +   +  I+                + + + K 
Sbjct: 29  NTKVVTMKGDTITVTDFYNEAKTSTAAQQSMLSLILSRVFEKEYGKSVPEKKVEESYNKT 88

Query: 221 KDNY----------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
              Y                   +  R + ++    ++  K E+++D  +  +E    + 
Sbjct: 89  AKQYGSSFSDALAQAGLTTDTYKKQIRTTMLVEYAVKQAAKKELTDDNYKKAFESYTPEM 148

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGK-SLSDISLGSFSKEYIPD 322
            +      + + F ++++A +  +  K  G  F  +A+E    +   I     S + +  
Sbjct: 149 TT------QVIAFDDEEKAKKVLEETKAEGADFANIAKENTTEANKKIDYTFDSADTVLP 202

Query: 323 VSLADSIFSLAKKGDFTPVIHG------SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
             +      L  +G+ + VI           Y + H+   K      ++E K  +   + 
Sbjct: 203 SDVIKETAKL-NEGEKSAVITVMDSRTYQKKYYVVHLVK-KAEKKADWKEYKSRLKEIIM 260

Query: 377 ITKASE 382
             K ++
Sbjct: 261 NEKEND 266



 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 75/275 (27%), Gaps = 38/275 (13%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           KI    + +  ++     A  S S ++ VV++    +  + F N  K         +  +
Sbjct: 6   KIVTGFVTLASVLT--LAACSSTSDNTKVVTMKGDTITVTDFYNEAKTSTAAQQSMLSLI 63

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
           ++    +  G  K + +  V  +  ++  +  G                           
Sbjct: 64  LSRVFEKEYG--KSVPEKKVEESY-NKTAKQYGSSFSDA--------------------- 99

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
                 LA+ G+    Y       +     V          +      + +  E  +   
Sbjct: 100 ------LAQAGLTTDTYKKQIRTTMLVEYAVKQAAKKELTDDNYKKAFESYTPEMTTQVI 153

Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN---- 250
              +      + + + A    +    K+N      K+I Y             I      
Sbjct: 154 AFDDEEKAKKVLEETKAEGADFANIAKEN-TTEANKKIDYTFDSADTVLPSDVIKETAKL 212

Query: 251 -DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
            +  ++      +     +   V  LV   +K+AD
Sbjct: 213 NEGEKSAVITVMDSRTYQKKYYVVHLVKKAEKKAD 247


>gi|116872595|ref|YP_849376.1| ABC transporter, permease protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116741473|emb|CAK20597.1| ABC transporter, permease protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 1136

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 109/359 (30%), Gaps = 65/359 (18%)

Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK----NKEKYFSPEIRTVEQLVF 277
            ++  PEY   +           K   S+  + +E E     +K     PE R + ++  
Sbjct: 204 QDFDLPEY---TIANLTFDNLAAKQAFSDAYVASEKEDKTKIDKALKDQPEKR-LNKIKT 259

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
             QK+ D+A   + KGK  +Q  + +  +        FSK  I   +    I    K+G+
Sbjct: 260 SEQKKLDDATAEINKGKAALQRNQAKLTNAKAELDEGFSKYQIAKANYDAKI----KQGE 315

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-ANQMRITKASEKVKEDYKRLEEFLA 396
                                S       VKK + A++++I +  E + +    LEE  A
Sbjct: 316 -----------------AEIASGEKELTNVKKQLDASKIKIDQGEEAILQAQMELEEGRA 358

Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK---------- 446
           +    + +                  +     ++  I    + L   F            
Sbjct: 359 VWEDTNNLLNTANGYLRTARKTLENAQKQ--PDLTTIDLDRESLIDSFDMLTSELDFSNE 416

Query: 447 ---------DDPLSKDHTVALPDGSY----------MWVQIKESIPARDRKLEEVLTDVK 487
                    +D L       + D             +    KE   AR   L+     ++
Sbjct: 417 ERTEYKNAINDLLDNYENGEIDDADIRKALNLALEQVAYAEKEYQSARAN-LDAEKQKIE 475

Query: 488 KDWK--TVKTAEEVSSK-ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
           +  K    KT E  ++K A Q  L   + G     + K   A    T      +  NK 
Sbjct: 476 QAEKTLATKTTELQNAKSAYQQGLAKYQAGIEKLSLAKKQLAEGKKTGAAELQNALNKL 534


>gi|61378589|gb|AAX44931.1| endo-alpha-N-acetylgalactosaminidase [Bifidobacterium longum subsp.
            longum JCM 1217]
          Length = 1966

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 111/345 (32%), Gaps = 36/345 (10%)

Query: 195  IVLNNRHVPAIADPSNAV--LTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIE---I 248
            I L           ++A    T  ++  K ++ A E    +   +     +         
Sbjct: 1625 ITLTLADGTTKDVVTDAEFSTTTMWQ--KASFDAVENVTAVRLTVLSSAGQSDSQANKFA 1682

Query: 249  SNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL--AEEQGK 305
            S  EL+   ++  E+   +P+   +         +A+   +S    + +  L  A E  +
Sbjct: 1683 SAAELRLTTDREVEEETVAPDKTDLN----DTIAKANGLKESDYTAESWTALVKAREAAQ 1738

Query: 306  SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
            +++D    +     +   +L  +I  L K G+         G V  + ++++ +   + +
Sbjct: 1739 AVADNDKATAYDVALALTNLESAIAGLEKTGEEPGP-----GPVEVNKTDLQTAVNKASK 1793

Query: 366  EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
              K D         A E +K   + L+   A    +D      +     L        + 
Sbjct: 1794 LEKADYTTNSWEAFA-EALKAAQQVLDNKNATQQDVDTALSALQDAISKLEAATEPKPNP 1852

Query: 426  KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            +   V         + +    +  L  D +          ++      A  +K  EV  +
Sbjct: 1853 E-PGVVDKAALNATINKAAAINLGLYTDDSAN-------ALR------AALKKAREVSDN 1898

Query: 486  VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 K V  A E   KA   +++     K   ++  N G+ + T
Sbjct: 1899 SNATQKQVDAAREALEKAIAALVKRPAA-KGDGNVVSNTGSDVAT 1942


>gi|167525367|ref|XP_001747018.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774313|gb|EDQ87942.1| predicted protein [Monosiga brevicollis MX1]
          Length = 554

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 62/223 (27%), Gaps = 42/223 (18%)

Query: 7   KASRTWVAKIFLVVLFVPFL----IWGLSDALFSVSGSSTV--------VSVGR----QK 50
             +R W   I L ++F  F     + G+ D   +                +V +    + 
Sbjct: 51  SHARGW---ILLGLIFGCFAPSKRLRGVVDDFLTKGPPKYAPFVRARLQRTVNKGTRTKP 107

Query: 51  VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
                   ++ +E   +         +    S    +++L+ + + + L     + G   
Sbjct: 108 PTALEVEMAFSKEPIRLQVDFFVDRVNVELDSQTTARELLEQIYAQSAL---AREAGFSI 164

Query: 111 ---------------DHGRVWGEIAR-----SPLFHGKDNKFSHDVFVSRLAREGINEKE 150
                              V   + +     S  F G   + + +     L R+ +    
Sbjct: 165 YVADTDGDMMTSCGAGDTFVLDIVFQYETLASARFQGSWQRLAQERPFQLLLRKEMFAPW 224

Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
           +       +    +V       R +   + Q  RF+   R V 
Sbjct: 225 FEGGDNADIIFEQIVDGLERANRSAAADMPQLIRFHMYGRDVQ 267


>gi|168007202|ref|XP_001756297.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692336|gb|EDQ78693.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1383

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 50/162 (30%), Gaps = 15/162 (9%)

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWG 117
            +++ ++  +I  +    R ++  L K+     + L     L+Q I  +           
Sbjct: 846 DEQIRIVENQIREIRTELRLKTEDLRKQEDKAKNLLKEKQLLEQKIARLEKNKTDET--- 902

Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
                    G +++F  +      AR G +EK+  +   ++      +    G       
Sbjct: 903 --------RGLEHQFEQER-DELRARVGESEKKLQERTQELSRAEQALASRSGEFETVAA 953

Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
            + + +        +D   L    +          L   +++
Sbjct: 954 NVKELEELREMKEDIDRKNLQTAAILKRQADQIVELQALYKE 995


>gi|325846747|ref|ZP_08169662.1| conserved domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481505|gb|EGC84546.1| conserved domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 208

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 56/146 (38%), Gaps = 12/146 (8%)

Query: 228 EYKRISYILFDVHEKEK----KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           E+  ISY+     +         +  + E+   +++NK   F  +    + L+F N+ EA
Sbjct: 47  EFDEISYMDSIRKKHMDYYFSNDDTKDSEIVDYFKENK---FLQKKYKYDCLIFDNESEA 103

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            +    +K  + F     ++  +    +   +  +++ +        SL K    + +  
Sbjct: 104 IKIRAKIKNSQDF-----KKYLNSKVRNYDIYRSDFVYNDDFLLKESSLKKADQISKIFK 158

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKK 369
               Y+I  ++++  +      + KK
Sbjct: 159 YKDSYIILMINSVNQNENDLLIDAKK 184


>gi|322690360|ref|YP_004219930.1| endo-alpha-N-acetylgalactosaminidase [Bifidobacterium longum subsp.
            longum JCM 1217]
 gi|320455216|dbj|BAJ65838.1| endo-alpha-N-acetylgalactosaminidase [Bifidobacterium longum subsp.
            longum JCM 1217]
          Length = 1966

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 111/345 (32%), Gaps = 36/345 (10%)

Query: 195  IVLNNRHVPAIADPSNAV--LTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIE---I 248
            I L           ++A    T  ++  K ++ A E    +   +     +         
Sbjct: 1625 ITLTLADGTTKDVVTDAEFSTTTMWQ--KASFDAVENVTAVRLTVLSSAGQSDSQANKFA 1682

Query: 249  SNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL--AEEQGK 305
            S  EL+   ++  E+   +P+   +         +A+   +S    + +  L  A E  +
Sbjct: 1683 SAAELRLTTDREVEEETVAPDKTDLN----DTIAKANGLKESDYTAESWTALVKAREAAQ 1738

Query: 306  SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
            +++D    +     +   +L  +I  L K G+         G V  + ++++ +   + +
Sbjct: 1739 AVADNDKATAYDVALALTNLESAIAGLEKTGEEPGP-----GPVEVNKTDLQTAVNKASK 1793

Query: 366  EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
              K D         A E +K   + L+   A    +D      +     L        + 
Sbjct: 1794 LEKADYTTNSWEAFA-EALKAAQQVLDNKNATQQDVDTALSALQDAISKLEAATEPKPNP 1852

Query: 426  KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            +   V         + +    +  L  D +          ++      A  +K  EV  +
Sbjct: 1853 E-PGVVDKAALNATINKAAAINLGLYTDDSAN-------ALR------AALKKAREVSDN 1898

Query: 486  VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 K V  A E   KA   +++     K   ++  N G+ + T
Sbjct: 1899 SNATQKQVDAAREALEKAIAALVKRPAA-KGDGNVVSNTGSDVAT 1942


>gi|300813640|ref|ZP_07093965.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512246|gb|EFK39421.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 167

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 41/147 (27%), Gaps = 21/147 (14%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN------------SERARSV 83
                     V   ++P   F  S+           G   +            S+     
Sbjct: 23  GKGPEGVAAKVNDVEIPMEDFYKSYAIRRNQYVANAGGDESVLEGPIDPTGKQSKLTVDQ 82

Query: 84  GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
            L    + +L     + Q      ++ +   +   + +     G D     + F + L  
Sbjct: 83  YLKDITIKDLTETEIIKQDAAANNIKVEDSEIQKILDQYKAQLGGD-----EQFKAYLDS 137

Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVG 170
            GI     +D+  ++L    +VG +  
Sbjct: 138 LGIP----LDYLKEVLKNQTLVGKYTQ 160


>gi|320010364|gb|ADW05214.1| putative lipoprotein [Streptomyces flavogriseus ATCC 33331]
          Length = 218

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 41/134 (30%), Gaps = 6/134 (4%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
               VG  ++  ++     +      +Q+     +    +S  L +  L  L+ G  LD+
Sbjct: 33  AAAVVGGDRIDVATVQA--QAADVRTAQQKSEQSDELVTKSGQLTRVKLSGLIFGRVLDR 90

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
             +D G+      +  ++           +    +    L +  +   +      + +  
Sbjct: 91  AAKDAGVSVSRKEI-QQLRGVAAEQSGGEEGVRTL---MLEQRWVAPGQIEASLRQEVQL 146

Query: 162 TDVVGMFVGGMRPS 175
             + G     ++  
Sbjct: 147 QKLAGALGADLQSP 160


>gi|189440120|ref|YP_001955201.1| Subtilisin-like serine protease [Bifidobacterium longum DJO10A]
 gi|189428555|gb|ACD98703.1| Subtilisin-like serine protease [Bifidobacterium longum DJO10A]
          Length = 1937

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 114/345 (33%), Gaps = 36/345 (10%)

Query: 195  IVLNNRHVPAIADPSNAV--LTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIE---I 248
            I L           ++A    T  ++  K ++ A E    +   +     +         
Sbjct: 1596 ITLTLADGTTKDVVTDAEFSTTTMWQ--KASFDAVENVTAVRLTVLSSAGQSDSQANKFA 1653

Query: 249  SNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL--AEEQGK 305
            S  EL+   ++  E+   +P+   +         +A+   +S    + +  L  A E  +
Sbjct: 1654 SAAELRLTTDREVEEETVAPDKTDLN----DTIAKANGLKESDYTAESWTALVKAREAAQ 1709

Query: 306  SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
            +++D    +     +   +L  +I  L K G+         G V  + ++++ +   + +
Sbjct: 1710 AVADNDKATAYDVALALTNLESAIAGLEKTGEEPGP-----GPVEVNKTDLQTAVNKASK 1764

Query: 366  EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
              K D         A E +K   + L+   A    +D      +     L        + 
Sbjct: 1765 LEKADYTTNSWEAFA-EALKAAQQVLDNKNATQQDVDTALSALQDAISKLEAATEPKPNP 1823

Query: 426  KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            +   V         + +    +  L  D +          ++      A  +K  EV  +
Sbjct: 1824 E-PGVVDKAALNATINKAAAINLGLYTDDSAN-------ALR------AALKKAREVSDN 1869

Query: 486  VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 K V  A E   KA   +++ +   K   ++  N GA+++T
Sbjct: 1870 SNATQKQVDAAREALEKAIAGLVKRTAA-KGDGNVVSNTGANVVT 1913


>gi|312133465|ref|YP_004000804.1| apre [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772701|gb|ADQ02189.1| AprE [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1937

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 114/345 (33%), Gaps = 36/345 (10%)

Query: 195  IVLNNRHVPAIADPSNAV--LTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIE---I 248
            I L           ++A    T  ++  K ++ A E    +   +     +         
Sbjct: 1596 ITLTLADGTTKDVVTDAEFSTTTMWQ--KASFDAVENVTAVRLTVLSSAGQSDSQANKFA 1653

Query: 249  SNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL--AEEQGK 305
            S  EL+   ++  E+   +P+   +         +A+   +S    + +  L  A E  +
Sbjct: 1654 SAAELRLTTDREVEEETVAPDKTDLN----DTIAKANGLKESDYTAESWTALVKAREAAQ 1709

Query: 306  SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
            +++D    +     +   +L  +I  L K G+         G V  + ++++ +   + +
Sbjct: 1710 AVADNDKATAYDVALALTNLESAIAGLEKTGEEPGP-----GPVEVNKTDLQTAVNKASK 1764

Query: 366  EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
              K D         A E +K   + L+   A    +D      +     L        + 
Sbjct: 1765 LEKADYTTNSWEAFA-EALKAAQQVLDNKNATQQDVDTALSALQDAISKLEAATEPKPNP 1823

Query: 426  KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            +   V         + +    +  L  D +          ++      A  +K  EV  +
Sbjct: 1824 E-PGVVDKAALNATINKAAAINLGLYTDDSAN-------ALR------AALKKAREVSDN 1869

Query: 486  VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 K V  A E   KA   +++ +   K   ++  N GA+++T
Sbjct: 1870 SNATQKQVDAAREALEKAIAGLVKRTAA-KGDGNVVSNTGANVVT 1913


>gi|257066458|ref|YP_003152714.1| hypothetical protein Apre_0965 [Anaerococcus prevotii DSM 20548]
 gi|256798338|gb|ACV28993.1| hypothetical protein Apre_0965 [Anaerococcus prevotii DSM 20548]
          Length = 308

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 88/275 (32%), Gaps = 57/275 (20%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFIN 58
           M + I K  +T  +KI L      FL++    +  S   + S+ + SV  + +    +  
Sbjct: 1   MKQTI-KNLKTKTSKILL----TAFLLFATLTSCNSKDRTTSNIIASVDGKTISSDLYSK 55

Query: 59  SWKQELGMISQKIGFVVNSERARSVGLDKKIL-----DNLVSGATLDQFIEDIGLEADHG 113
             +      S+  G      ++++   + +IL     D+++    + + +E   ++ D  
Sbjct: 56  ELRFYQAYYSKVYGESYLENKSKNGKTNDQILRDELVDSMIKDQVMKKDLESNNIKLDD- 114

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
                          +         + L              +  L+           + 
Sbjct: 115 ---------------NGS-------NSLKNN----------LSDKLNGE---DSLKANIL 139

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
                 +      + N S+     +           +  +  ++ K K+ +R     + +
Sbjct: 140 ALGFNENSINDILY-NDSIRKAHFDL--YLKKNKVQDKDVVDFYNKDKNLHRL---YKYN 193

Query: 234 YILFDVHEKEKKI--EISNDE-LQAEYEKNKEKYF 265
            ++FD     K I  +I++ +  ++   KN   Y 
Sbjct: 194 VLVFDDENVAKNIKDKITDAKSFKSFLNKNARNYS 228


>gi|149728671|ref|XP_001498255.1| PREDICTED: laminin, beta 2 (laminin S) [Equus caballus]
          Length = 1801

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 75/243 (30%), Gaps = 31/243 (12%)

Query: 407  REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
            + +  + +L  +  + KD   +E A     E +  RV     P S +    L        
Sbjct: 1507 QVEQANQELRELIQSVKDFLSQEGADPDSIEMVATRVLELSIPASPEQIQHLA------- 1559

Query: 467  QIKESIPARDRKLEEVLT-------DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
                +I  R R L +V T       DV++  + ++ A    S+A     +         +
Sbjct: 1560 ---GAIAERVRSLADVDTILARTVGDVRRAEQLLQDARRARSRAEGEKQKAETVQAALEE 1616

Query: 520  IGKNLGASLLTTNQ--INRMDNENKFFGY----DGISQVFSGPV-------EMVKCFPIE 566
              +  GA+        ++  D E           G  Q  S           +++   ++
Sbjct: 1617 AQRAQGAAQGAIQGAVVDTQDTEQTLHQVQERMAGAEQALSSAGERAQQLDGLLEALKLK 1676

Query: 567  NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY-SVTVHDNLIQR 625
               + +         G  Q + +    L Q    D   +V A  + +   V       ++
Sbjct: 1677 RAGNSLAASSAEETAGSAQGRAREAEQLLQGPLGDQYQTVRALAERKAQGVLAAQARAEQ 1736

Query: 626  YLD 628
              D
Sbjct: 1737 LRD 1739


>gi|317482702|ref|ZP_07941715.1| F5/8 type C domain-containing protein [Bifidobacterium sp.
            12_1_47BFAA]
 gi|316915825|gb|EFV37234.1| F5/8 type C domain-containing protein [Bifidobacterium sp.
            12_1_47BFAA]
          Length = 1947

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 114/345 (33%), Gaps = 36/345 (10%)

Query: 195  IVLNNRHVPAIADPSNAV--LTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIE---I 248
            I L           ++A    T  ++  K ++ A E    +   +     +         
Sbjct: 1606 ITLTLADGTTKDVVTDAEFSTTTMWQ--KASFDAVENVTAVRLTVLSSAGQSDSQANKFA 1663

Query: 249  SNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL--AEEQGK 305
            S  EL+   ++  E+   +P+   +         +A+   +S    + +  L  A E  +
Sbjct: 1664 SAAELRLTTDREVEEETVAPDKTDLN----DTIAKANGLKESDYTAESWTALVKAREAAQ 1719

Query: 306  SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
            +++D    +     +   +L  +I  L K G+         G V  + ++++ +   + +
Sbjct: 1720 AVADNDKATAYDVALALTNLESAIAGLEKTGEEPGP-----GPVEVNKTDLQTAVNKASK 1774

Query: 366  EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
              K D         A E +K   + L+   A    +D      +     L        + 
Sbjct: 1775 LEKADYTTNSWEAFA-EALKAAQQVLDNKNATQQDVDTALSALQDAISKLEAATEPKPNP 1833

Query: 426  KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            +   V         + +    +  L  D +          ++      A  +K  EV  +
Sbjct: 1834 E-PGVVDKAALNATINKAAAINLGLYTDDSAN-------ALR------AALKKAREVSDN 1879

Query: 486  VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 K V  A E   KA   +++ +   K   ++  N GA+++T
Sbjct: 1880 SNATQKQVDAAREALEKAIAGLVKRTAA-KGDGNVVSNTGANVVT 1923


>gi|302565330|ref|NP_001181397.1| laminin subunit gamma-1 [Macaca mulatta]
          Length = 1798

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 80/274 (29%), Gaps = 34/274 (12%)

Query: 376  RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
            R+ +   +  E  +R +  L    +      + +  + +L  +  + KD   +E A    
Sbjct: 1476 RVAETRRQASEAQQRAQAALDKANASR---GQVEQANQELRELVQSVKDFLNQEGADPDS 1532

Query: 436  KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
             E +  RV     P S +    L            +I  R R L +V   + +    V+ 
Sbjct: 1533 IEMVATRVLELSIPASAEQIQHLA----------GAIAERVRSLADVDAILARTVGDVRR 1582

Query: 496  AEEV---SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
            AE++   + +A        ++ +  +   +    +        R    +       + QV
Sbjct: 1583 AEQLLQDARRARSRAEGEKQKAETVQAALEEAQRAQGVAQGAIRGAVADTRDTEQTLYQV 1642

Query: 553  FSGPVEMVKCFPIENGLSYVVFKVTNS-----------------KVGPVQEKDKFISYLT 595
                    +        +  +  +  +                   G  Q + +    L 
Sbjct: 1643 QERMTGAEQALRSAGERARQLDALLEALKLKWAGNSLAASTAEETAGSAQGRAQEAEQLL 1702

Query: 596  QMMNKDLLDSVIAYLKSQY-SVTVHDNLIQRYLD 628
            +    D   +V A  + +   V       ++  D
Sbjct: 1703 RGPLGDQYQTVKALAERKAQGVLAAQGRAEQLRD 1736


>gi|116624599|ref|YP_826755.1| DSBA oxidoreductase [Candidatus Solibacter usitatus Ellin6076]
 gi|116227761|gb|ABJ86470.1| DSBA oxidoreductase [Candidatus Solibacter usitatus Ellin6076]
          Length = 340

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 67/263 (25%), Gaps = 31/263 (11%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
                V    +  S        +L  + Q+I             L KK L+ ++    L+
Sbjct: 28  DKAAMVNGAPILASEIDAKLGNDLAQLQQQI-----------FNLRKKQLNTVIDQKLLE 76

Query: 101 QFIEDIGLEADHGRVWGEIAR--SPLFHGKDNKFSHDV-------FVSRLAREG--INEK 149
                 G+      V  E+    +P    +  KF  +        F S   +    +  +
Sbjct: 77  DESARRGVMI-AELVQSEVTSHVTPATSAEAEKFFKENSTKLKGDFKSLEEQIRNFLTAQ 135

Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
                  + L            + P  +   +       +R      +          P 
Sbjct: 136 RLQARQQEFLKSLRTAAKVEVFLAPPPVFRSEVSVEGAPSRGGVAAPVTIVEFSDFHCPF 195

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
                   +  +  Y   E  R  Y  F +     +  ++ +  +      + K++    
Sbjct: 196 CRKAQSVLDNLRAKY--GEKIRFVYRDFPLEGLHPQARVAAEASRCA--AEQGKFWEFHD 251

Query: 270 RTVEQLVFPNQKEADEAFQSLKK 292
           R        +   +  A   + K
Sbjct: 252 RLFH----GDPDASQAALSRIAK 270


>gi|160882390|ref|ZP_02063393.1| hypothetical protein BACOVA_00339 [Bacteroides ovatus ATCC 8483]
 gi|156112203|gb|EDO13948.1| hypothetical protein BACOVA_00339 [Bacteroides ovatus ATCC 8483]
          Length = 516

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              +  FSLAK G  +       G  I  V + +   T +++ V   +  ++R  +  +K
Sbjct: 191 EFENVAFSLAK-GMASQPFFTPEGIHILKVMDREE--TAAYENVSARLMERLRRKEILDK 247

Query: 384 ----VKEDYKRLEEFLALGTSMDEI 404
               V E  K+  ++     +M+E+
Sbjct: 248 GTGAVLERLKKAWQYAPNQAAMEEL 272


>gi|92117866|ref|YP_577595.1| hypothetical protein Nham_2343 [Nitrobacter hamburgensis X14]
 gi|91800760|gb|ABE63135.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 319

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           S  V V  + +           +   + Q       +         ++++D L++     
Sbjct: 32  SVAVMVNGEPITSFDIE-----QRSRLIQISTHKTPT--------RQQVIDELINEKVKV 78

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           +  +  G+      +  + A      G   + S +     LA +G+            L 
Sbjct: 79  KEAKKFGVNPTSADIDQQYASM----GARMRMSPEQLTKSLASQGVRPDTIKARLKADLV 134

Query: 161 -RTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
             + V G F   +  S+  +++A R   E++S
Sbjct: 135 WGSLVRGRFKDSLLVSDRDVNEALRNSGEDQS 166


>gi|118377080|ref|XP_001021722.1| hypothetical protein TTHERM_00151900 [Tetrahymena thermophila]
 gi|89303488|gb|EAS01476.1| hypothetical protein TTHERM_00151900 [Tetrahymena thermophila SB210]
          Length = 2093

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 80/288 (27%), Gaps = 46/288 (15%)

Query: 47   GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL--------VSGAT 98
              Q+          K ++   SQ+    +  + A      ++ L  L        +    
Sbjct: 1260 NHQEKEDQDLQEELKNQINKTSQEELDFLIEQEANEE--KREKLKQLCTLDDDDDLQYEL 1317

Query: 99   LDQFIEDIGLEADH-GRVWGEIARSPLF---HGKDNKFSHDVFVSRLAREGINEKEYIDH 154
             +Q ++   +      ++   I     F    G DN      +   L      E ++   
Sbjct: 1318 REQEVQTEYIRLSECEQINVLIHELTKFDQVQGGDNSSLSTQYEKALEIIKTGEMQFEQK 1377

Query: 155  YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
               + +  + +      ++ S            EN  +             +      + 
Sbjct: 1378 MEAVDAIKNALKQLEAYIKMSET----LNAIANENIKLQNEKFEWELKYKESQVEIEDMK 1433

Query: 215  QWFEKYKDNYRAP--------------------EYKRI-SYILFDVHEKEKKIEISNDEL 253
              ++  K  Y                       E K I S+    V +  KK + ++ E 
Sbjct: 1434 SHYKNVKQKYEKKNTMICHLQDELSSAKEKVKNEQKSIKSFFKGMVKQIIKKNQANDLEG 1493

Query: 254  QAEYEKNKEKYFSPEI-------RTVEQLVFPNQKEADEAFQSLKKGK 294
              +  +N +   +P         R   + +  +Q +A+E     K+ +
Sbjct: 1494 TQQENQNIDDNQTPNEDGQEEQDRIKAKQLIGDQDDAEEKQDGKKRHE 1541


>gi|322503447|emb|CBZ38532.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 944

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 76/230 (33%), Gaps = 21/230 (9%)

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD---EISRRE 408
            + +I+     +       + ++      + ++ +  +R +     G ++D   E++   
Sbjct: 36  KLRDIEQGVVPASVTEADFLLHRSAEVNTASELFDVARRRQALGGEGEALDRWSELAAEL 95

Query: 409 ------KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
                      D   V     DV G  V + P        +     PLS    VA+ +  
Sbjct: 96  PSHPHSSASPADAFKVTEEASDVSGAGVVSAPAS---AVAMDATSRPLSSAGYVAMSEAE 152

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK------ANQLVLEYSKEGKN 516
            +  ++      R++   E+  D     +  K   ++  +      A + +++  ++ + 
Sbjct: 153 -VAERVARHAYVREKTFAELQEDRAAALQGQKERLQLQRRSLPMHQAREELVKLIRDNRV 211

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
              +G+    S  TT  +  +  E    G     ++ + P        ++
Sbjct: 212 VIIVGET--GSGKTTQLLQYLYEEGFHLGPKARKRLLTTPAGAAASSKVK 259


>gi|167755739|ref|ZP_02427866.1| hypothetical protein CLORAM_01254 [Clostridium ramosum DSM 1402]
 gi|167704678|gb|EDS19257.1| hypothetical protein CLORAM_01254 [Clostridium ramosum DSM 1402]
          Length = 459

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 15/126 (11%)

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYR-----------APEYKRISYILFDVHEKEKKI- 246
           N      A  +   L  + ++ K ++              +     Y   ++  +   + 
Sbjct: 133 NADDKKKARSTFGELESYCKENKIDFEDYLHSTFGLEAIKDNLISYYEESNLASRYAAVL 192

Query: 247 --EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
             E +++E++  Y  NK    +  IR        ++ +ADE  Q ++    F Q+A +  
Sbjct: 193 LKEPTDEEVEQYYLANKNDIDTINIRYFAFAK-DDKAKADEFAQKIRSEADFKQMAVDYS 251

Query: 305 KSLSDI 310
                I
Sbjct: 252 SDDKKI 257


>gi|126656393|ref|ZP_01727654.1| hypothetical protein CY0110_21857 [Cyanothece sp. CCY0110]
 gi|126622079|gb|EAZ92786.1| hypothetical protein CY0110_21857 [Cyanothece sp. CCY0110]
          Length = 247

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 58/148 (39%), Gaps = 16/148 (10%)

Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSL- 307
           +D+++  + +N+  Y       + +++  ++  A E + ++ + +  F  +A +  + + 
Sbjct: 103 DDKVEPYFYQNQLNYT---EVIMYEIILDDEDLAMELYYAIDENEISFWDVAHQYIQDIE 159

Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
                  LGS  ++ +    ++ +IF+          I  S G  +  V  I        
Sbjct: 160 LRRKGGYLGSVKRQEL-KPEISAAIFAANPP-QLLKPIMTSQGIHLVFVEEII---QPEL 214

Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLE 392
            E K    +++     SE +K    + +
Sbjct: 215 DEKK---RHKILSDLFSEWLKGKINQAD 239


>gi|221120547|ref|XP_002165606.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 7746

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 58/491 (11%), Positives = 140/491 (28%), Gaps = 52/491 (10%)

Query: 55   SFINSWKQELGMISQKIGFVVNSERA----RSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
               N  + +L +  Q+    +    A    +   L ++    L+        I+      
Sbjct: 4640 ELQNREQNQLKLEIQRREKELAQLDAHIKSQEFELKQQEAKQLMEENEKMANIQRQK-AL 4698

Query: 111  DH--GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD--VVG 166
            +    +    I +      ++ +   +   +   +      E   H  +   RT    + 
Sbjct: 4699 NDIYEKQKEIIDKQQEIALREIELKKEKLKAVQRQN-----EIELHIKQSELRTQEDKLH 4753

Query: 167  MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW-FEKYKDNYR 225
                 +  S   L    +     R+                     L +   +      +
Sbjct: 4754 KKQEELYKSESELFIRLQEAELQRTALAEEEKRIKEKEDLKLKILQLKEMEIDLNTREKK 4813

Query: 226  APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE---IRTVEQLVFPNQKE 282
              E  +       +     + +   +E      +  EK+   E    RT+ +  F  +K+
Sbjct: 4814 LEERIKAEEKQIILDRLRFEEQKLKNEA-----EQLEKFKEAEMTLKRTLFEEQFKREKQ 4868

Query: 283  ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
                 +  KKG +     E     L+  +L    K    + ++   IF L    + + + 
Sbjct: 4869 NQMERELWKKGLEEEIELERLALMLTQQTL-FQVKSEEIEKAMEKKIFELT---EVSRIA 4924

Query: 343  HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
                      ++  +       +E  + +       K      E+ ++L          +
Sbjct: 4925 VEKVEAEKVRIAAEEAEKLRIAEEEAEKLRLAEEEAKKVRIAAEEAEKLRLA-------E 4977

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
            E + + +I + +   +  A ++ +   +AA   ++  L     +   ++ +    L    
Sbjct: 4978 EEAEKVRIAAEEAENLCIATEEAEKLRIAAEEAEKLRLAEEEAEKVRIAAEEAEKL---- 5033

Query: 463  YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
                +I E    + R L E         +  K     + KA +L L   +  K      +
Sbjct: 5034 ----RIAEEEAEKLR-LAE---------EEAKKVRIAAEKAEKLRLAEEEAEKVRIAAEE 5079

Query: 523  NLGASLLTTNQ 533
                 + T   
Sbjct: 5080 AENLRIATEEA 5090


>gi|126725343|ref|ZP_01741185.1| PPIC-type PPIASE domain [Rhodobacterales bacterium HTCC2150]
 gi|126704547|gb|EBA03638.1| PPIC-type PPIASE domain [Rhodobacterales bacterium HTCC2150]
          Length = 407

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 67/198 (33%), Gaps = 20/198 (10%)

Query: 19  VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
           +++    LI     +L   +  +  V+V  + V +                         
Sbjct: 8   ILVIGALLIAPAQISLAQSNPFAAAVTVDNRAVTYFEIEQR-------------AAFLDV 54

Query: 79  RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
                 + K   + LV+        + +G++ +   +         F  + N  + + F+
Sbjct: 55  LRAPGNVLKTARETLVNERLQLNAAQSLGIQINQEELA---VGMAEFAKRANLKTAE-FI 110

Query: 139 SRLAREGINEKEYIDHYTKMLS-RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
             + ++GI  + + D     L+ R  V   FVG  + S   +D+A      +R     VL
Sbjct: 111 KAIGQDGIEPETFQDFVRAGLTWRKLVQNRFVGRAQVSEDEIDRALALS--SRKGGARVL 168

Query: 198 NNRHVPAIADPSNAVLTQ 215
            +  V    +P  A  ++
Sbjct: 169 LSEIVLPARNPEEAEASK 186


>gi|299148146|ref|ZP_07041208.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_23]
 gi|298512907|gb|EFI36794.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_23]
          Length = 516

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              +  FSLAK G  +       G  I  V + +   T +++ V   +  ++R  +  +K
Sbjct: 191 EFENVAFSLAK-GMASQPFFTPEGIHILKVMDREE--TAAYENVSARLMERLRRKEILDK 247

Query: 384 ----VKEDYKRLEEFLALGTSMDEI 404
               V E  K+  ++     +M+E+
Sbjct: 248 GTGAVLERLKKAWQYAPNQAAMEEL 272


>gi|158521717|ref|YP_001529587.1| SurA domain-containing protein [Desulfococcus oleovorans Hxd3]
 gi|158510543|gb|ABW67510.1| SurA domain [Desulfococcus oleovorans Hxd3]
          Length = 232

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 5/114 (4%)

Query: 28  WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
           +G  D+       S ++ +    V  + F N+    L +      F           +  
Sbjct: 32  FGGCDSTGKTQRQSFLLRIDEMVVTRTDFYNA----LEIAKTAYPFEALQNPEVMAKVKA 87

Query: 88  KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
           ++L  L     L +  +D+G+      +   +A        +  F   +  + +
Sbjct: 88  RLLKQLTEELILARRAQDLGIAVSDAELEKAVAHITE-DYPEGVFEQTLLENAI 140


>gi|195114078|ref|XP_002001594.1| GI16038 [Drosophila mojavensis]
 gi|193912169|gb|EDW11036.1| GI16038 [Drosophila mojavensis]
          Length = 1081

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 42/401 (10%), Positives = 124/401 (30%), Gaps = 25/401 (6%)

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
           S  L +      +++    + +   E    +    + R +E + +  ++      + + K
Sbjct: 513 SVALANAQSLIAELQEKLSQQEKLNEARHSESLEEQQRLLENINYLQRQNETLQTELMAK 572

Query: 293 GKKFIQLA-EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            +   + +  E G       L    +E       A  +F          V   S      
Sbjct: 573 DESLEKFSLSECGIENLRRELALLKEENEKQAQQAKEMFEQQLAEKAEQVRQLSKELHEI 632

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
                  S + + +  +  + ++  I +   ++++     E+   L   +DEIS +  + 
Sbjct: 633 K------SSSDTLESERAHVTDECEILQTEIRMRD-----EQIKELSQQLDEISTQLNVQ 681

Query: 412 SIDLPLVD--FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
             D   +D     +  +  +   +  + Q       K+    +     L D         
Sbjct: 682 KADSSALDEMLTEQQTQNVDSKTLLEELQAANAALAKEKLELQQQLSGLQDQLRASGDSN 741

Query: 470 ESIPARDRK---LEEVLTDVKKDWKTV-KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
             I  + ++   L E    +++  +   + A+   ++A +  L+ ++  +   D  K   
Sbjct: 742 AVIQKQQKENAQLMEAKAALEQQLQQESEIAKANRAEAAEKDLQLNELKQQLEDQAKLYA 801

Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
             + +  Q+ R   E +    +  +       ++      +      + +    +     
Sbjct: 802 QLVESQEQLKRERAEEQSQASERTA-------DLEAALNAKQSELEQLQQQLLEQTQLHA 854

Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
           +  +    L Q    +L  +       + ++      +++ 
Sbjct: 855 QLVESQGQLQQKHAAELGQTSARAADLEATLKATQTQLEQL 895


>gi|73985821|ref|XP_533831.2| PREDICTED: similar to Laminin beta-2 chain precursor (S-laminin)
            (Laminin B1s chain) [Canis familiaris]
          Length = 1801

 Score = 39.6 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 84/288 (29%), Gaps = 32/288 (11%)

Query: 373  NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
              + + +A     E  + L E   + + + E  R+                  +G+   A
Sbjct: 1452 ADLALGRARHTQAELQRALAEGGGILSQVAETRRQAGEAQQRAQAALDKANASRGQVEKA 1511

Query: 433  IPYKEQLLFRV--FGKDDPLSKDHT---------VALPDGSYMWVQIKESIPARDRKLEE 481
                 +L+  V  F   +    D           +++P        +  +I  R R L +
Sbjct: 1512 NQELRELIQSVKDFLSQEGADPDSIEMVATRVLELSIPASPEQIQHLAGAIAERVRSLAD 1571

Query: 482  VLT-------DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ- 533
            V T       DV++  + ++ A    S+A     +         +  +  GA+       
Sbjct: 1572 VDTILARTVGDVRRAEQLLQDARRARSRAEGEKQKAETVQAALEEAQRAQGAAQGAIQGA 1631

Query: 534  -INRMDNENKFFGY----DGISQVFSGPV-------EMVKCFPIENGLSYVVFKVTNSKV 581
             ++  D E           G  Q  S            ++   ++   + +         
Sbjct: 1632 VVDTQDTERTLHQVQAKMAGAEQALSSAGERAQELDGFLEALKLKRAGNSLAASSAEETA 1691

Query: 582  GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY-SVTVHDNLIQRYLD 628
            G  Q + +    L Q    D   +V A  + +   V       ++  D
Sbjct: 1692 GSAQGRAREAEQLLQGPLGDQYQTVKALAERKAQGVLAAQVRAEQLRD 1739


>gi|72383061|ref|YP_292416.1| hypothetical protein PMN2A_1223 [Prochlorococcus marinus str.
           NATL2A]
 gi|72002911|gb|AAZ58713.1| conserved hypothetical protein [Prochlorococcus marinus str.
           NATL2A]
          Length = 248

 Score = 39.6 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 90/240 (37%), Gaps = 23/240 (9%)

Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
           ++LS+  ++   V     S ++ D+  + Y + +  + ++L  +    I +  +     +
Sbjct: 13  QLLSKHKLLKTLVR----SEIIKDELSKIYIDEKRKEELILEFKKQQNIIE--DDKYKNF 66

Query: 217 FE-KYKDNYRAPEYK--RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
               + ++Y   +    +     + +     KIE       + + + K +    +I    
Sbjct: 67  LNINHLNDYDVEDIALGKTRIYEYSLKNFGHKIE-------SWFLERKSQL---DIIVYS 116

Query: 274 QLVFPNQKEADEAFQS-LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
            +   +   A E +   L K      LA E  + +   + G      I +   + + F  
Sbjct: 117 LIRVSDPFIARELYLRILSKETDIGDLATEFSEGIEKKTRGIVGPISIGNSHPSLANFLQ 176

Query: 333 A-KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
             + G   P +  +  ++I  V N +P+     +++KK++  ++       +  +  ++L
Sbjct: 177 NCEIGKVQPPLKINNSFLIIRVENFEPAKLD--EDMKKNMGEELLNKWLDIQADDMIEKL 234


>gi|85717064|ref|ZP_01048025.1| hypothetical protein NB311A_10143 [Nitrobacter sp. Nb-311A]
 gi|85696102|gb|EAQ33999.1| hypothetical protein NB311A_10143 [Nitrobacter sp. Nb-311A]
          Length = 298

 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 10/79 (12%)

Query: 31  SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
                S   S  V  VG Q +    F N  +             +  ++ +     KK+L
Sbjct: 32  GGEQTSAPNSQIVAHVGDQVITTQEFANELRL----------LNIPPDKQKDHETVKKVL 81

Query: 91  DNLVSGATLDQFIEDIGLE 109
             +V+   L Q      L+
Sbjct: 82  SEMVTRKYLLQQALTAKLD 100


>gi|242279457|ref|YP_002991586.1| hypothetical protein Desal_1987 [Desulfovibrio salexigens DSM 2638]
 gi|242122351|gb|ACS80047.1| conserved hypothetical protein [Desulfovibrio salexigens DSM 2638]
          Length = 319

 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 62/225 (27%), Gaps = 54/225 (24%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           KI + VL     ++G  +          +  V    +  S     +      +    GFV
Sbjct: 3   KILIGVLLAC-SLFGCQN---KSEEPGIIARVNGNPIYLSQLEYKYDLTHEGVG---GFV 55

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW---GEIARSPLFHGKDNK 131
            + E+ R+     +IL +L+    + Q +E   +      +     E+            
Sbjct: 56  PSVEQVRAEY--GQILGDLIVQELVAQELEQREIPVSDKELKEAEDEVRSD--------- 104

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
           +  D F   L    I E   I+ +   L     +  F   +    + +D           
Sbjct: 105 YPDDSFEQIL----IEEYIDINAWRSQLKYQLAMDKFFQDILRPEIKIDY---------- 150

Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
                                  +++  +  ++  P   +   + 
Sbjct: 151 -------------------KEAEKYYRTHLSDFYMPAGYKFVMVK 176


>gi|237719063|ref|ZP_04549544.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4]
 gi|229451442|gb|EEO57233.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4]
          Length = 514

 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              +  FSLAK G  +       G  I  V + +   T +++ V   +  ++R  +  +K
Sbjct: 189 EFENVAFSLAK-GMASQPFFTPEGIHILKVMDREE--TAAYENVSARLMERLRRKEILDK 245

Query: 384 ----VKEDYKRLEEFLALGTSMDEI 404
               V E  K+  ++     +M+E+
Sbjct: 246 GTGAVLERLKKAWQYAPNQAAMEEL 270


>gi|119512560|ref|ZP_01631637.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nodularia spumigena
           CCY9414]
 gi|119462760|gb|EAW43720.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nodularia spumigena
           CCY9414]
          Length = 250

 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 77/233 (33%), Gaps = 26/233 (11%)

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA-----VLTQWFEKYKDNYRAP- 227
            +  +L   +++    + +  +VL+    P    P         + Q ++   ++ R   
Sbjct: 22  TTAEILQLLEKYQMLPQLIKEVVLDEAIAPISCTPEEEKIACEQIAQHYQITSEDVRQRW 81

Query: 228 -EYKRISYILFDVHEKEKKIEISN-------DELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
            E   +S    D     ++ +I          +L++ + + K +    +      +   +
Sbjct: 82  LEQNNMSAEQLDAIAI-RQFKIEKFKHFTWGSDLESYFSQRKPQL---DRVVYSLIRTND 137

Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS-IFSLAKKGD 337
              A E +  L+ G+  F +LA E  +     + G      +  +  A + I + ++   
Sbjct: 138 IGIAQEIYFRLQAGEQTFAELAREYSQGPEAQTNGLVGPVELQTIHPALAKILATSQPQQ 197

Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
             P        VI  +  +         ++   +  ++   + +  ++     
Sbjct: 198 LLPPTQLENWIVIVRLEKLL------LTQLDNSLRQRLLNERFNSWLQAQMTE 244


>gi|325265467|ref|ZP_08132190.1| hypothetical protein HMPREF0240_04481 [Clostridium sp. D5]
 gi|324029325|gb|EGB90617.1| hypothetical protein HMPREF0240_04481 [Clostridium sp. D5]
          Length = 495

 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 67/526 (12%), Positives = 154/526 (29%), Gaps = 121/526 (23%)

Query: 6   RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST----VVSVGRQKVPFSSFI---- 57
           R+  +  +    L +    FL+ G+   LF  SG+       V++  +    S F     
Sbjct: 24  RQGRQITIFAAVLGL----FLVIGILAVLFFQSGAPVKMFSAVTIDGKGYKLSEFNYYYY 79

Query: 58  -------NSWKQELGMISQKI----GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
                  + + +    +            +  ++     + + ++++ S        E  
Sbjct: 80  AYYNSYLDEYSEFREYMFDDSVSLKDQPYDDNQSWFEYFEDQTVESMSSVLGTAALAEKE 139

Query: 107 GLEAD---HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
           G E        +   +             S D ++  +  +G+ EK Y     K L+ + 
Sbjct: 140 GFELSSEAQEEIDTALEGIESSADNAG-MSTDKYLENIYGDGMTEKLY----RKHLTYSH 194

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +   +                              +  V A    S   + ++++++   
Sbjct: 195 LAAEY------------------------------SDKVKADFGFSENEVKEYYKEHLAE 224

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           Y       ++Y  F V   +   + + +E Q  Y                         A
Sbjct: 225 YTF-----VNYERFYVKASDIDTDPTEEEKQNAY-----------------------SIA 256

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLA-KKGDFTPV 341
            +    ++KG +  +++ E        +  +F   Y  P+ S  + +F+   K GD   V
Sbjct: 257 QKICDKVEKGGELKEVSSEF---EDYGTYYAFDDAYYDPNFSYGEWLFAPERKDGDV-NV 312

Query: 342 IHGSFGYVIAHVSNIKPSFTV---------SFQEVKKDIANQMRITKASEKVKEDYKRLE 392
           I    GY +    +   S            S     +D ++     K ++  ++   + E
Sbjct: 313 IDDGSGYYVMVFHSRNESSYPTASIIDVCFSVDTALEDSSSDDYDNKVNQLYEDSCAKAE 372

Query: 393 EFLA-------LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
           E L           S + ++   +  S      +   +D     +            VF 
Sbjct: 373 ELLETWEKGDKTEDSFEALASENESASETDGTFENLTRDTLDDTID---------KWVFD 423

Query: 446 KDDPLSKDHTVALPDG-SYMWVQIKESIPARDRKLEEVLTDVKKDW 490
                     +    G   ++     +   + +  E++ TD  + W
Sbjct: 424 DGRKPGDCSVIYTESGFHVVYYAGTGAEAWQVKAEEDMRTDAYEKW 469


>gi|224014336|ref|XP_002296831.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968686|gb|EED87032.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 122

 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 294 KKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F +LA+   +   +     LG F ++ +   +   + F L        V+  S G  I
Sbjct: 59  ATFEELAKTESDCSSAKRGGDLGFFGRKKM-QPAFEKASFDLGVGELTEEVVDTSSGVHI 117

Query: 351 A 351
            
Sbjct: 118 I 118


>gi|83589867|ref|YP_429876.1| hypothetical protein Moth_1019 [Moorella thermoacetica ATCC 39073]
 gi|83572781|gb|ABC19333.1| Protein of unknown function DUF218 [Moorella thermoacetica ATCC
           39073]
          Length = 461

 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 53/226 (23%), Gaps = 50/226 (22%)

Query: 40  SSTVVSVGRQKVPFSSFINSW-KQEL-GMISQKIGFVVNSERARSVGLD----------- 86
              V  V  Q +   +      + +L   +  + G V   E  +  G D           
Sbjct: 239 EEAVALVNGQPINKEALEKEMLRMQLMAEMRVQSGTVSIDEFLKQSGRDWSKMSPEEKRY 298

Query: 87  --------------KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS---------P 123
                          +  + LV    L Q     G E                       
Sbjct: 299 YLRAKRQSEMTGEKNEAFNRLVREEVLYQEAVKEGYEVSIDEARRRYQEIETLSQESLKE 358

Query: 124 LFHGKDNKFSHDVFVSR----LAREGINEKEYIDHYT-KMLSRTDVVGMFVGGMRP---- 174
                  K   +         +   G    E +  Y  + L RT  +       +     
Sbjct: 359 ALKDAKAKEEIERLQEVEKKFMELMGFTSPEALTEYRVQRLMRTMPISRLREKFKADWGN 418

Query: 175 --SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
               +  D+  R+  ENR  DY   N     A     +  L   +E
Sbjct: 419 KHPEIRGDE-FRYMVENRWEDYT--NELLRQANIRIKDKDLEVIYE 461


>gi|71000699|ref|XP_755031.1| anucleate primary sterigmata (ApsB) [Aspergillus fumigatus Af293]
 gi|66852668|gb|EAL92993.1| anucleate primary sterigmata (ApsB), putative [Aspergillus fumigatus
            Af293]
          Length = 1637

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 85/287 (29%), Gaps = 57/287 (19%)

Query: 58   NSWKQELGMI--------SQKIGFVV------NSERARSVGLDKKILDNLVSG-ATLDQF 102
             + + EL  +          ++G ++      + +  R   L     D LV     L Q 
Sbjct: 738  QALRNELNYVIALPRAGQRDRVGSMISYTTASDRDMTRMPTLTSSSSDTLVEEIRLLRQE 797

Query: 103  IEDIGLEAD------------HGRVWGEIARSPLFHGKDNK--------FSHDVFVSRLA 142
              ++  E                R++ EI    L   +D          F      ++  
Sbjct: 798  NAELRREVSAQTSMLTSRNKEKERLYQEIEELKLGQRRDGVRSVAGDSIFDRSASRAQGR 857

Query: 143  RE-----GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
                   G       D   + L     +      +    L  +Q  R   E R  +Y  L
Sbjct: 858  SSSRASDGTGPSRSDDAEREDL--EQRIDQLRDQVSALKLE-NQTIRAELEERIAEYDAL 914

Query: 198  NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ--- 254
            + +   A  D ++ +     ++  +  R      ++  + D    E  IE   +E++   
Sbjct: 915  D-KQYQADVDGADEMFNALHQERDEAERKMNDCLVNMQIMDAQYTED-IENLEEEVRRKT 972

Query: 255  ---------AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
                        +    +    E+R+  + +   +++A    Q  +K
Sbjct: 973  EECERLEEELRNQDENLRALQAEMRSASEGIIRLEEDAQTNLQRYEK 1019


>gi|34556608|ref|NP_906423.1| hypothetical protein WS0160 [Wolinella succinogenes DSM 1740]
 gi|34482322|emb|CAE09323.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 279

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 36/146 (24%)

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
            ++ ++ L+        IE  G+  +   V  E+ R      K N  + + F S L ++G
Sbjct: 51  KERAMEMLIDKMLHQDEIERYGISTNEIEVNQEVERI----AKSNGATLEQFRSFLDQKG 106

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
           +N + Y +   + + +  +    V                     ++             
Sbjct: 107 VNWESYKEDLKEKVLKDKLYDKIVAN-------------------NLRMA---------- 137

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKR 231
                  L  ++E  K+ +  P    
Sbjct: 138 ---DERELVAYYESNKNLFSIPARIE 160


>gi|15614832|ref|NP_243135.1| hypothetical protein BH2269 [Bacillus halodurans C-125]
 gi|10174889|dbj|BAB05988.1| BH2269 [Bacillus halodurans C-125]
          Length = 245

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/65 (12%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLVSGAT 98
             V +V  + +   +++   +Q++  +  + G  +  E  + +   ++++ ++ L++   
Sbjct: 55  DPVATVNGESIDKETYVMVLEQQMMTM-AQYGISLEGEEGKQMISLIEEQTIEQLINEQL 113

Query: 99  LDQFI 103
           L Q  
Sbjct: 114 LQQAA 118


>gi|212696154|ref|ZP_03304282.1| hypothetical protein ANHYDRO_00690 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676783|gb|EEB36390.1| hypothetical protein ANHYDRO_00690 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 306

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 49/152 (32%), Gaps = 23/152 (15%)

Query: 15  KIFLVVLFV-PFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
           K  + ++ +   ++   S  +      + V  V  Q +  + +            +K G 
Sbjct: 12  KTIIAIISLFCLILVSCSSKI---DKKNNVAYVDGQAISKNLYEKELSYYQKFYLKKYGN 68

Query: 74  VVNSERARS-----VGLDKKILDNLVSGATLDQFIEDIGLEADHG---RVWG-------- 117
               ++ ++       L+ ++LD+L+    +   +    ++        V          
Sbjct: 69  DYLDKKTKNGLTNYERLESELLDSLIQDQIMINDLRKNKVKITKNDSLEVIEDLSKKSMS 128

Query: 118 ---EIARSPLFHGKDNKFSHDVFVSRLAREGI 146
               I     F   +++F    ++  + ++ +
Sbjct: 129 KDSLIENVKSFGADEDEFDEISYMDSIRKKHM 160



 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 57/146 (39%), Gaps = 12/146 (8%)

Query: 228 EYKRISYILFDVHEKEK----KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           E+  ISY+     +         +  + E+   +++NK   F  +    + L+F N+ EA
Sbjct: 145 EFDEISYMDSIRKKHMDYYFSNDDTKDSEIVDYFKENK---FLQKKYKYDCLIFDNESEA 201

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            +   ++K  + F     ++  +    +   +  +++ +        SL K    + +  
Sbjct: 202 IKIRANIKNSQDF-----KKYLNSKVRNYDIYRSDFVYNDDFLLKESSLKKADQISKIFK 256

Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKK 369
               Y+I  ++++  +      + KK
Sbjct: 257 YKDSYIILMINSVNQNENDLLIDAKK 282


>gi|77408015|ref|ZP_00784764.1| cell wall surface anchor family protein [Streptococcus agalactiae
           COH1]
 gi|77412904|ref|ZP_00789108.1| cell wall surface anchor family protein [Streptococcus agalactiae
           515]
 gi|77161044|gb|EAO72151.1| cell wall surface anchor family protein [Streptococcus agalactiae
           515]
 gi|77173377|gb|EAO76497.1| cell wall surface anchor family protein [Streptococcus agalactiae
           COH1]
          Length = 863

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 58/180 (32%), Gaps = 19/180 (10%)

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV----DYIVLNN--RHVPAIA 206
                + ++       +      N  +D   +   +  S         ++   +   A A
Sbjct: 102 QTVKDVTAKAQANTQAIKDATAENAKIDAENKAESQRVSQLNAQTKAKIDAENKDAQAKA 161

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           D +NA L + ++      ++ E         +   + K  + +N +LQ +Y+     Y  
Sbjct: 162 DATNAQLQKDYQAKLAKIKSVEAYNAGVRQRNKDAQAK-ADATNAQLQKDYQAKLALYNQ 220

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
                        + +A+   QS+     F   A+ +G   ++      + +  PD S  
Sbjct: 221 -----------ALKAKAEADKQSINNVA-FDIKAQAKGVDNAEYGNSIMTAKTKPDGSFE 268


>gi|323449638|gb|EGB05524.1| hypothetical protein AURANDRAFT_30544 [Aureococcus anophagefferens]
          Length = 149

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
            S  D  L  F++  + D S   + F+L + G  + V+    G  + 
Sbjct: 101 SSAKDGQLKPFARGEL-DKSFEAAAFAL-EPGALSGVVDTPSGLHLI 145


>gi|197286477|ref|YP_002152349.1| hypothetical protein PMI2648 [Proteus mirabilis HI4320]
 gi|194683964|emb|CAR45219.1| conserved hypothetical protein [Proteus mirabilis HI4320]
          Length = 1644

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 78/251 (31%), Gaps = 33/251 (13%)

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           ++Q++          V       +  D  +L NL++  T +   +         ++   I
Sbjct: 618 FEQQIEKAQNSAQLDVPMNEMAQMSEDLDMLSNLMASLTFEDVTQQ-------TQIIDAI 670

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGI------NEKEYIDHYTKMLSRTDVVGMFVGGMR 173
           ++             +   +RL ++           ++   +   L    +         
Sbjct: 671 SQIYA--------QLNQSRARLQQKRKSQSSVETVAQFGAQFR--LFSQGITNALSLATD 720

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           P     +Q  R   +   ++     +             L + FE +K +      +R  
Sbjct: 721 PERCE-EQLSRLLVQLEELESQFSQHDEFLDDILSKREELLETFEAHKQSLLDDRQRRSQ 779

Query: 234 YILFDVHEKEKKIE------ISNDELQAEYEKNKEKYFSPEIRTVEQL-VFPNQKEADEA 286
            +L   +   + ++       S DEL A +  +     + EI  +E+L    +  +AD+ 
Sbjct: 780 SLLTAANRLLENLQRRTTRLQSQDELNAFFASDPLALKTREI--IEKLREINDNVKADDI 837

Query: 287 FQSLKKGKKFI 297
              LK  +   
Sbjct: 838 DARLKSSRDQA 848


>gi|297289124|ref|XP_001090393.2| PREDICTED: laminin subunit beta-1 [Macaca mulatta]
          Length = 1786

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 68/574 (11%), Positives = 169/574 (29%), Gaps = 108/574 (18%)

Query: 113  GRVWGEIARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
              +   +A+SP         N F                ++ I   T+M++   V     
Sbjct: 1228 SEIKDILAQSPAAEPLKNIGNLFEEA-------------EKLIKDVTEMMA--QVEVKLS 1272

Query: 170  GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQWFEKYKDNY 224
                 SN    +      E  S+D  V            S+       +T++F+    + 
Sbjct: 1273 DTTSQSNSTAKELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITKYFQM---SL 1329

Query: 225  RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             A E    S    + +   ++  +  D ++    + + ++   +      L        D
Sbjct: 1330 EAEERVNASTA--EPNSTVEQSALMRDRVEDVMMERESQFKEKQEEQARLL--------D 1379

Query: 285  EAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS------------------------- 314
            E    L+        AE       G S S+   G                          
Sbjct: 1380 ELAGKLQS-LDLSAAAEMTCGTPPGASCSETECGGPNCRTDEGEKKCGGPGCGGLVTVAH 1438

Query: 315  --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
              + K    D    D + +L++    + ++  +           K S       +K +  
Sbjct: 1439 NAWQKAMDLDQ---DVLSALSEVEQLSKMVSEAK----LRADEAKQSAEDIL--LKTNAT 1489

Query: 373  NQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKIVSIDLPLVDFAGKDVKGKEV 430
             + ++ K++E ++   K++  FL      +D I +   +++ +++P      +++     
Sbjct: 1490 KE-KMDKSNEDLRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIR 1548

Query: 431  AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
              +    Q+   +      +++   + L +         +     D     V   +++  
Sbjct: 1549 ERVESLSQVEVILQQSAADIARAEML-LEEAKKASKSATDVKVTADM----VKEALEEAE 1603

Query: 491  KTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
            K    AE+   +A++           +  E +   +   +  + +        ++ R   
Sbjct: 1604 KAQVAAEKAIQQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELKRKAA 1663

Query: 540  ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQ 596
            +N          V++            +G     +K      +K        +  + + Q
Sbjct: 1664 QNSGEAEYIEKVVYTVKQSAEDVKKTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQ 1723

Query: 597  MMNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
               K LL        ++  L+ +Y    +   ++
Sbjct: 1724 NEAKTLLAQANSKLQLLKDLERKY--EDNQKYLE 1755


>gi|88857633|ref|ZP_01132276.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           tunicata D2]
 gi|88820830|gb|EAR30642.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           tunicata D2]
          Length = 283

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/153 (10%), Positives = 46/153 (30%), Gaps = 5/153 (3%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKKGKKFIQL 299
              +S++   + YEKN   +     R    +        +   A    +       +  L
Sbjct: 120 PEPVSDEMALSYYEKNLADFGQKTTRKYHLVRLNISKGQSPDAAQTVLEQFSDTADWQSL 179

Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
           +         +   +  +          +I +     + +         +   V + + +
Sbjct: 180 SINTVFDGQTVQFFTGHQAEKGLDPFYQNIIAKLAVNEASDSFSLKGSLIKLKVVSEQVN 239

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
             + F +V+  I   +   +  + ++ED   L+
Sbjct: 240 NALPFSQVRTKIKKSLAPLQLKKAIQEDAALLK 272


>gi|260172003|ref|ZP_05758415.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D2]
 gi|315920316|ref|ZP_07916556.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D2]
 gi|313694191|gb|EFS31026.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D2]
          Length = 515

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
              +  FSLAK G  +       G  I  V + +   T +++ V   +  ++R  +  +K
Sbjct: 190 EFENVAFSLAK-GMASQPFFTPEGIHILKVMDREE--TAAYENVSARLMERLRRKEILDK 246

Query: 384 ----VKEDYKRLEEFLALGTSMDEI 404
               V E  K+  ++     +M+E+
Sbjct: 247 GAGAVLERLKKAWQYAPNQAAMEEL 271


>gi|313672045|ref|YP_004050156.1| sura domain [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938801|gb|ADR17993.1| SurA domain [Calditerrivibrio nitroreducens DSM 19672]
          Length = 298

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 12/138 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD---KKILDNLVSG 96
           +  +  VG   +      +     +  I     + +  E  RS  +    K +LD LV  
Sbjct: 17  NRILAVVGNNIITQYEVESFNPNRVKEI-----YSIQDEDKRSQAIKTYYKNVLDFLVEQ 71

Query: 97  ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
            TL++  +   +          I        K N  S       LA+EGI   +Y     
Sbjct: 72  YTLEEIGKKYNVVVTEKEAEEAIDDI----IKRNNISVKDLEEALAKEGITMAQYRWQIK 127

Query: 157 KMLSRTDVVGMFVGGMRP 174
             +  T +    +  +  
Sbjct: 128 MDILATRLKSRVINQLVV 145


>gi|227357550|ref|ZP_03841903.1| AAA ATPase [Proteus mirabilis ATCC 29906]
 gi|227162260|gb|EEI47264.1| AAA ATPase [Proteus mirabilis ATCC 29906]
          Length = 1644

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 78/251 (31%), Gaps = 33/251 (13%)

Query: 60  WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
           ++Q++          V       +  D  +L NL++  T +   +         ++   I
Sbjct: 618 FEQQIEKAQNSAQLDVPMNEMAQMSEDLDMLSNLMASLTFEDVTQQ-------TQIIDAI 670

Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGI------NEKEYIDHYTKMLSRTDVVGMFVGGMR 173
           ++             +   +RL ++           ++   +   L    +         
Sbjct: 671 SQIYA--------QLNQSRARLQQKRKSQSSVETVAQFGAQFR--LFSQGITNALSLATD 720

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
           P     +Q  R   +   ++     +             L + FE +K +      +R  
Sbjct: 721 PERCE-EQLSRLLVQLEELESQFSQHDEFLDDILSKREELLETFEAHKQSLLDDRQRRSQ 779

Query: 234 YILFDVHEKEKKIE------ISNDELQAEYEKNKEKYFSPEIRTVEQL-VFPNQKEADEA 286
            +L   +   + ++       S DEL A +  +     + EI  +E+L    +  +AD+ 
Sbjct: 780 SLLTAANRLLENLQRRTTRLQSQDELNAFFASDPLALKTREI--IEKLREINDNVKADDI 837

Query: 287 FQSLKKGKKFI 297
              LK  +   
Sbjct: 838 DARLKSSRDQA 848


>gi|194756214|ref|XP_001960374.1| GF13333 [Drosophila ananassae]
 gi|190621672|gb|EDV37196.1| GF13333 [Drosophila ananassae]
          Length = 4865

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 59/408 (14%), Positives = 124/408 (30%), Gaps = 39/408 (9%)

Query: 149  KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF---YFENRSVDYIVLNNRHVPAI 205
             E  +   + +S   +       ++ S    DQAK       E +    I          
Sbjct: 4031 AEVSEVLAEKISEKKLEEAKQPEVKESEAKPDQAKALEKRALEEQKRKKISEKKAEEAKQ 4090

Query: 206  ADPSNAVLT----QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
             +   +       + FEK     +  E K    +    +++ +K E+S    +   EK  
Sbjct: 4091 PEVKESETKSDQAKAFEKQALEEQKLEEKTEKQVKTKSYKQSEKAEVSGVLAEKISEKKA 4150

Query: 262  EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
            E+   PE++  E        +A    +   + K   Q+  +  K      +     E I 
Sbjct: 4151 EEAKQPEVKESE----TKPDQAKALEEQKLEEKTEKQVKTKSDKKSEKAEVSEVLAEKIS 4206

Query: 322  DVSLADSI-----FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
            +    ++       S  K      +               K        EV + +A ++ 
Sbjct: 4207 EKKPEEAKQPEVKESETKPDQAKALEEQKLEEKANKQVKTKSEKKPEQAEVSEVLAEKIS 4266

Query: 377  ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
              KA E  + + K  E       ++++ +  E+ +            D K ++       
Sbjct: 4267 EKKAEEAKQPEVKDSETKSDQAKALEKQALEEQKLEEKTEKQVKTKSDKKSEK----AEV 4322

Query: 437  EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE----------VLTDV 486
             ++L     +                   V+  E+ P + + LEE          V T  
Sbjct: 4323 SEVLAEKISEKKAEEAKQPE---------VKESETKPDQAKALEEQKLEEKANKQVKTKS 4373

Query: 487  KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
            +K  +  + +E ++ K ++   E +K+ +      K      L    +
Sbjct: 4374 EKKPEQAEVSEVLAEKISEKKPEEAKQPEVKESEAKPDQPKALEKQAL 4421


>gi|89070359|ref|ZP_01157666.1| PPIC-type PPIASE domain protein [Oceanicola granulosus HTCC2516]
 gi|89044006|gb|EAR50181.1| PPIC-type PPIASE domain protein [Oceanicola granulosus HTCC2516]
          Length = 405

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 18/142 (12%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           S  ++V    + F         +   + +      +        L+    + LV      
Sbjct: 29  SPAITVNDSAISFYEID-----QRAKLLRVFNTPGD--------LEALAREQLVEDRLKL 75

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
             ++  GL+     +  E      F G+ +   ++ F+  LA  G+ E+   D     +S
Sbjct: 76  AELDRAGLQLSEESLAAE---MEAFAGRAD-LPYEQFIGVLAEAGVAEETLRDFVRVGVS 131

Query: 161 -RTDVVGMFVGGMRPSNLLLDQ 181
            R  +   + G    +   +DQ
Sbjct: 132 WRDYIRTRYRGRAEVNEADVDQ 153


>gi|312143970|ref|YP_003995416.1| Tetratricopeptide TPR_1 repeat-containing protein [Halanaerobium
           sp. 'sapolanicus']
 gi|311904621|gb|ADQ15062.1| Tetratricopeptide TPR_1 repeat-containing protein [Halanaerobium
           sp. 'sapolanicus']
          Length = 404

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 78/245 (31%), Gaps = 33/245 (13%)

Query: 39  GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
               +  V   ++    F +  +Q+           ++S    S     +ILD+++    
Sbjct: 49  NPGVIAEVNNHEISEEEFFSVLQQQAPQ------RALSSSEIISF--RYEILDSIIERHL 100

Query: 99  LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
           + +  +DI +E +      E   + L    +      V    L+ +G    +  D   + 
Sbjct: 101 ILEKADDINVEVEVAEAEVEENYNALLEENEITEEELV--ENLSEQGFTLGDLKDDIRRN 158

Query: 159 LSR----TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
           L R    T  +   +G +  S   +++            Y+        A+AD   A L 
Sbjct: 159 LERSKRLTQTIDEAIGEIEVSEAEIEEL-----------YLERYPEEETALADV-EAELE 206

Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
               + K N              +  + E +I I+   L A +E   E Y     +    
Sbjct: 207 DEIREGKRN-------EAVIDWLEGLKSEAEIVINEPVLSAYHEYQTENYEEAVEQFSSF 259

Query: 275 LVFPN 279
           +   +
Sbjct: 260 IELES 264


>gi|146103245|ref|XP_001469516.1| DEAH-box RNA helicase [Leishmania infantum]
 gi|134073886|emb|CAM72625.1| putative DEAH-box RNA helicase [Leishmania infantum JPCM5]
          Length = 944

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 77/230 (33%), Gaps = 21/230 (9%)

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD---EISRRE 408
            + +I+     +       + ++      + ++ +  +R +     G ++D   E++   
Sbjct: 36  KLRDIEQGVVPASVTEADFLLHRSAEVNTASELFDVARRRQALGGEGEALDRWSELAAEL 95

Query: 409 ------KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
                      D   V     DV+G  V + P        +     PLS    VA+ +  
Sbjct: 96  PSHPHSSASPADAFKVTEEASDVRGAGVVSAPAS---AVAMDATSRPLSSAGYVAMSEAE 152

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK------ANQLVLEYSKEGKN 516
            +  ++      R++   E+  D     +  K   ++  +      A + +++  ++ + 
Sbjct: 153 -VAERVARHAYVREKTFAELQEDRAAALQGQKERLQLQRRSLPMHQAREELVKLIRDNRV 211

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
              +G+    S  TT  +  +  E    G     ++ + P        ++
Sbjct: 212 VIIVGET--GSGKTTQLLQYLYEEGFHLGPKARKRLLTTPAGAAASSKMK 259


>gi|327289365|ref|XP_003229395.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           [Anolis carolinensis]
          Length = 591

 Score = 39.2 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 86/244 (35%), Gaps = 31/244 (12%)

Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV--------EQLVFPNQKEADEAFQ 288
               E   ++ + + E++  +     K F  E+  +        +QL  P Q  +    +
Sbjct: 342 LRFAELLDRVSVIDPEMRIRFTSPHPKDFPDEVFQLMKERHNICKQLHLPVQSGSSRILE 401

Query: 289 SLKKG---KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
           ++++G   + +++L      SL  ++LGS         + AD       +   + V    
Sbjct: 402 AMRRGYTREAYLELVHHVRDSLPGVTLGSDIIAGFCGETEAD------HQQTVSLVQEVG 455

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
           +        + +   T +F  +K D+   ++  +  E        L +    G S    +
Sbjct: 456 YRTAFIFAYSER-QKTRAFHRLKDDVPLDVKRRRVKE--------LTDVFREGASKANAA 506

Query: 406 RREKIVSIDLP-LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
              ++  + +      +  ++ G+         +++F     DD      TV    G Y+
Sbjct: 507 AVGQMQVVLVEGPSKRSALELSGRN----DGNIKVIFPDVKMDDGTGSGSTVHAQPGDYV 562

Query: 465 WVQI 468
            V+I
Sbjct: 563 LVKI 566


>gi|254417316|ref|ZP_05031059.1| hypothetical protein MC7420_8085 [Microcoleus chthonoplastes PCC
           7420]
 gi|196175854|gb|EDX70875.1| hypothetical protein MC7420_8085 [Microcoleus chthonoplastes PCC
           7420]
          Length = 245

 Score = 39.2 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 81/248 (32%), Gaps = 25/248 (10%)

Query: 146 INEKEYIDHYTK-MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
           I  +E I    K  L    +  + +     +    D+ K    E                
Sbjct: 12  ITAEEVIPLLAKYQLLPQLLREIIIDQAIATLDCTDEEKNAACEQ-----------FYTK 60

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
               S      W ++   +    E   +  +  +  ++         ++++ + K K + 
Sbjct: 61  NQLTSEEERQAWRDRQDLSLEQVEELAVRGLKLEKFKQATWGH----KIESYFLKRKGRL 116

Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYI--P 321
              +      +       A E +  +++G+  F +LA +  +     + G      +  P
Sbjct: 117 ---DRVIYSLIRTKEAAIAQELYFRIQEGEQSFNELARDYSQGPEAQTGGLVGPVELSTP 173

Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
             +LA  + ++++ G   P       +++  +    P        +++ + ++M  T   
Sbjct: 174 HPTLAQ-MLTVSQPGQLLPPTRLGDWFIVIRLEKFLPVQLD--DAMRQRLLDEMFTTWLK 230

Query: 382 EKVKEDYK 389
           E++++   
Sbjct: 231 EQLRQQIS 238


>gi|88195570|ref|YP_500376.1| hypothetical protein SAOUHSC_01873 [Staphylococcus aureus subsp.
            aureus NCTC 8325]
 gi|87203128|gb|ABD30938.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            NCTC 8325]
          Length = 2186

 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKTKAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAA 1411


>gi|67922823|ref|ZP_00516322.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Crocosphaera
           watsonii WH 8501]
 gi|67855316|gb|EAM50576.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Crocosphaera
           watsonii WH 8501]
          Length = 134

 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYI--PDVSLADS 328
              +   +   A E +  +K+G+  F +LA +  +     + G      +  P   +A  
Sbjct: 3   YSLIRSKDPGVAQELYFRIKEGENTFSELARQYSQGSEAQTGGLLGPVELNTPHPKIAQ- 61

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
           I + ++ G  +P       ++I  +     +        ++ + N++
Sbjct: 62  ILAASRPGQLSPPTPIGDWWIILRLEKYMSAQLD--DNTRQRLLNEL 106


>gi|167759320|ref|ZP_02431447.1| hypothetical protein CLOSCI_01667 [Clostridium scindens ATCC 35704]
 gi|167662877|gb|EDS07007.1| hypothetical protein CLOSCI_01667 [Clostridium scindens ATCC 35704]
          Length = 243

 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 66/172 (38%), Gaps = 10/172 (5%)

Query: 221 KDNYRAPEYKRISYILFDVHEKEK----KIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
              Y    Y +      +    EK    +I  + ++++A YE NKE Y + +   ++  V
Sbjct: 73  PTQYTMETYIKYICGSMEPELIEKMKGKEISCTEEDVRAYYEDNKE-YIAVQEAAMQFDV 131

Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP--DVSLADSIFSLAK 334
               +E  E  + + +    I+ AE   +  +   +       +   +  L + +F + K
Sbjct: 132 IMTSQENKELLEKIAQEDDVIKYAESDAEVFTVSEMEFQENSVVYNRNPDLMEQLFGM-K 190

Query: 335 KGDFTPVIHGSFGYVIAHV-SNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
            GD   +     G V  +V      S  + +++V++ + N     +  E + 
Sbjct: 191 SGDRY-LTEDIEGIVYLYVYKGETESCILPYEQVRESVENMYLRAEFDEILS 241


>gi|73981721|ref|XP_857044.1| PREDICTED: similar to Laminin beta-1 chain precursor (Laminin B1
            chain) isoform 2 [Canis familiaris]
          Length = 1654

 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 60/523 (11%), Positives = 153/523 (29%), Gaps = 90/523 (17%)

Query: 161  RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQ 215
               V          SN    +      E  S+D  V            S+       +T+
Sbjct: 1132 MAQVEVKLSDTASLSNSTARELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITK 1191

Query: 216  WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
            +F+    +  A E    S    D +   ++  ++ D ++      + ++   +      L
Sbjct: 1192 YFQM---SLEAEERVNASTT--DSNSTVEQSALTRDRVEDLMMDREAQFREKQEEQARLL 1246

Query: 276  VFPNQKEADEAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS---------------- 314
                    DE    L+        AE       G S S+   G                 
Sbjct: 1247 --------DELAGKLQS-LDLSAAAEMTCGTPPGASCSETDCGGPNCRTDEGEKKCGGPG 1297

Query: 315  -----------FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                       + K    D    D + +LA+    + ++  +           K +    
Sbjct: 1298 CGGLVTVAHSAWQKAMDFD---RDVLSALAEVEQLSKMVSEAK----LRADEAKQNAQ-- 1348

Query: 364  FQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKIVSIDLPLVDFA 421
               ++K  A + ++ K++E ++   K++  FL      +D I +   +++ +++P     
Sbjct: 1349 -DVLQKTNATKEKVDKSNEDLRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQ 1407

Query: 422  GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
             +++       +    Q+   +      +++   + L +         +     D     
Sbjct: 1408 LQNLTEDIRERVESLSQVEVILQQSAADVARAEAL-LEEAKRASKSATDVKVTADM---- 1462

Query: 482  VLTDVKKDWKTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLT 530
            V   +++  K    AE+   +A++           +  E +   +   +  + +      
Sbjct: 1463 VKEALEEAEKAQIAAEKAIKQADEDIQGTQNLLTSIESETAASEETLLNASQRISELERN 1522

Query: 531  TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEK 587
              ++ R   +N          V++            +      +K      ++       
Sbjct: 1523 VEELKRKAAQNSGEAEYIEKVVYTVKQSADDVKKALDNEVDEKYKKVEKLIAQKTEESAD 1582

Query: 588  DKFISYLTQMMNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
             +  + + Q   K LL        ++  L+ +Y    +   ++
Sbjct: 1583 ARRKAEMLQNEAKTLLAQANSKLQLLKDLERKY--EDNQKYLE 1623


>gi|73981723|ref|XP_533089.2| PREDICTED: similar to Laminin beta-1 chain precursor (Laminin B1
            chain) isoform 1 [Canis familiaris]
          Length = 1655

 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 60/523 (11%), Positives = 153/523 (29%), Gaps = 90/523 (17%)

Query: 161  RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN-----AVLTQ 215
               V          SN    +      E  S+D  V            S+       +T+
Sbjct: 1133 MAQVEVKLSDTASLSNSTARELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITK 1192

Query: 216  WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
            +F+    +  A E    S    D +   ++  ++ D ++      + ++   +      L
Sbjct: 1193 YFQM---SLEAEERVNASTT--DSNSTVEQSALTRDRVEDLMMDREAQFREKQEEQARLL 1247

Query: 276  VFPNQKEADEAFQSLKKGKKFIQLAE-----EQGKSLSDISLGS---------------- 314
                    DE    L+        AE       G S S+   G                 
Sbjct: 1248 --------DELAGKLQS-LDLSAAAEMTCGTPPGASCSETDCGGPNCRTDEGEKKCGGPG 1298

Query: 315  -----------FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
                       + K    D    D + +LA+    + ++  +           K +    
Sbjct: 1299 CGGLVTVAHSAWQKAMDFD---RDVLSALAEVEQLSKMVSEAK----LRADEAKQNAQ-- 1349

Query: 364  FQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEI-SRREKIVSIDLPLVDFA 421
               ++K  A + ++ K++E ++   K++  FL      +D I +   +++ +++P     
Sbjct: 1350 -DVLQKTNATKEKVDKSNEDLRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQ 1408

Query: 422  GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
             +++       +    Q+   +      +++   + L +         +     D     
Sbjct: 1409 LQNLTEDIRERVESLSQVEVILQQSAADVARAEAL-LEEAKRASKSATDVKVTADM---- 1463

Query: 482  VLTDVKKDWKTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLT 530
            V   +++  K    AE+   +A++           +  E +   +   +  + +      
Sbjct: 1464 VKEALEEAEKAQIAAEKAIKQADEDIQGTQNLLTSIESETAASEETLLNASQRISELERN 1523

Query: 531  TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEK 587
              ++ R   +N          V++            +      +K      ++       
Sbjct: 1524 VEELKRKAAQNSGEAEYIEKVVYTVKQSADDVKKALDNEVDEKYKKVEKLIAQKTEESAD 1583

Query: 588  DKFISYLTQMMNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
             +  + + Q   K LL        ++  L+ +Y    +   ++
Sbjct: 1584 ARRKAEMLQNEAKTLLAQANSKLQLLKDLERKY--EDNQKYLE 1624


>gi|328544014|ref|YP_004304123.1| SurA N-terminal domain family protein [polymorphum gilvum
           SL003B-26A1]
 gi|326413758|gb|ADZ70821.1| SurA N-terminal domain family protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 307

 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 16/137 (11%)

Query: 44  VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
           V V  Q +   S+  + +  L  ++Q+                +   + LV      +  
Sbjct: 31  VVVNEQAIT--SYDIAQRARLITLTQRKSG---------ETARRMAQEELVDDVLKLKEA 79

Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
           + IG+    G V    A       +  K S     + L + G++           ++ + 
Sbjct: 80  QRIGISVSKGDVDDAFASI----AQRVKMSPANLAAALRQSGVDPDTLRARLRAEVAWSR 135

Query: 164 VVGM-FVGGMRPSNLLL 179
            VG  F   ++ S+  +
Sbjct: 136 AVGQRFRAQVKVSDSDV 152


>gi|302800860|ref|XP_002982187.1| hypothetical protein SELMODRAFT_421537 [Selaginella moellendorffii]
 gi|300150203|gb|EFJ16855.1| hypothetical protein SELMODRAFT_421537 [Selaginella moellendorffii]
          Length = 434

 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 9/124 (7%)

Query: 97  ATLDQFIE-DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
             LD F   D+        +   +AR   FH    +       S L + G+++ +Y D +
Sbjct: 176 ELLDNFSTVDME-STSDEEMLDAVARHLEFHWAGGEIFL-RIESVLLKLGLSKAQYEDVF 233

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
                +  +V +    +     +++    ++ E R +     N      + +  + V T 
Sbjct: 234 CDNTIQQLLVKV---SINVPPSIVESTIAWFIEKRDLRR---NWAAAQQLRELFDTVETL 287

Query: 216 WFEK 219
           ++++
Sbjct: 288 YWKE 291


>gi|46410161|gb|AAS93940.1| P-83/100 protein [Borrelia garinii]
          Length = 693

 Score = 39.2 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 100/281 (35%), Gaps = 22/281 (7%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +    + G   S++ +D           V   +L+              +    E +K +
Sbjct: 188 LKKNILSGKVESDIDIDSLV-----TDKVVAALLSENEAGVNFARDITDIQG--ETHKAD 240

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
                  +I   L +VH+ +  I  + + L+ + EK  ++    E R   +     +K+ 
Sbjct: 241 -----QDKIDIELDNVHKSDSNITETIENLRDQLEKATDE----EHRKEIESQVDAKKKQ 291

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            E            Q   +  +   DI   +  ++   D+   + + +L K GD +    
Sbjct: 292 KEELDKKAIDLDKAQQKLDSSEDNLDIQRDTVREKIQEDIDEINKVKNLPKPGDVSSPKV 351

Query: 344 GSFGYVIAHVSNIKPS-FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
                +   + +++      S +  K++I  Q+ I K+ E++ +     +     G    
Sbjct: 352 DKQLQIKESLEDLQEQLKETSDENQKREIEKQIEIKKSDEELLKSKDP-KALDLNGDLNS 410

Query: 403 EISRREKIVSIDLPLVDFAGK----DVKGKEVAAIPYKEQL 439
           ++S +EKI   +  +V    K    D+   E    P  ++L
Sbjct: 411 KVSSKEKIKGKEGEIVKEESKASLADLNNDENLMRPEDQKL 451


>gi|209528083|ref|ZP_03276560.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209491474|gb|EDZ91852.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 250

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 64/180 (35%), Gaps = 11/180 (6%)

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           S      W    K      E + I+     + + +++   +   +++ +   K      +
Sbjct: 65  SPEAQKAWLNLNK--LTLEEAQAIAERPIKIEKFKRERWTNK--VESHFITRKSSL---D 117

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYIPDVSLA- 326
                 +   N   A E +  + +G++ F + A E  +     + G      +     A 
Sbjct: 118 HVVYSLIRTKNPGLAHELYFRISEGEQEFSEAAREYSEGPESRTGGIMGPVSLAQPHPAI 177

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
             + ++++ G   P    S   VI  +    P+     + +++ + +++  T   E++ +
Sbjct: 178 SKLLAVSQPGQLWPPRPLSEWMVIIRLEKFIPAQLD--ESMRRHLIDELFETWLREEIAK 235


>gi|157818917|ref|NP_001102025.1| lipopolysaccharide-responsive and beige-like anchor protein [Rattus
            norvegicus]
 gi|149048217|gb|EDM00793.1| LPS-responsive beige-like anchor (predicted) [Rattus norvegicus]
          Length = 2767

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/280 (10%), Positives = 82/280 (29%), Gaps = 44/280 (15%)

Query: 357  KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF--LALGTSMDEISRREKIVSID 414
             P +    ++  +++ +Q  + +A+    +    LE         ++   S      ++ 
Sbjct: 930  TPGYEKKVEQGNQELLDQAAMEEATTNEAKHACDLEASSDAVEPVTLTSTSSEPGKDTVT 989

Query: 415  LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
            +  V  +      ++ A +P   +            +        D  Y+ ++++    +
Sbjct: 990  ISGVRASVSSPSEQDAAEMPELLE------------NSGVEEEDGDDDYVELKVEGIEGS 1037

Query: 475  RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN---------LG 525
                 EE    +  + +  +       +A +      ++G++                 G
Sbjct: 1038 ---PAEEAR--LPAERQAEEARLPAEHQAEEACQPAERQGESVSVAASEGREEVEVCGNG 1092

Query: 526  ASLLTTNQINRMDNENKF-----FGYDGISQVFSGPVEMVKCFP-----------IENGL 569
              L     I +  N+ +       G+  ++   S         P           +  G+
Sbjct: 1093 CELQEEAPITKSHNDPETGDSKESGFPTVATAGSLATSSEVPVPQTTLQPDSDEMLGGGV 1152

Query: 570  SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
               +   T S      +  +  +   Q + K  + SV + 
Sbjct: 1153 KTDIAGETESVSDCADDVSEAPATSEQKIAKLDVSSVASD 1192


>gi|186685932|ref|YP_001869128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
 gi|186468384|gb|ACC84185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
          Length = 266

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 50/143 (34%), Gaps = 13/143 (9%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDI 310
           +L++ + K K  +   +      +   N+  A+E +  + +G+  F +LA E  +     
Sbjct: 111 QLESYFLKYKRHF---DKVIYSLIRTDNRGTANELYFRITEGEQSFAELAHEYSQGPEAE 167

Query: 311 SLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
           + G      +     + A  +   ++ G     +     +VI  V     +   +F    
Sbjct: 168 TSGIIGPVEVGTITPNFAQ-LLCTSQVGIVQAPVAFGESWVIVRVEKFITAQLDNF---- 222

Query: 369 KDIANQMRITKASEKVKEDYKRL 391
             +  ++         ++   +L
Sbjct: 223 --MRQRLLQENFETWFQQQLSQL 243


>gi|224369908|ref|YP_002604072.1| PpiC2 [Desulfobacterium autotrophicum HRM2]
 gi|223692625|gb|ACN15908.1| PpiC2 [Desulfobacterium autotrophicum HRM2]
          Length = 225

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 45/155 (29%), Gaps = 12/155 (7%)

Query: 14  AKIFLVVLFV--PFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
            ++   ++ V    + W            + ++  G   +    F      EL   +   
Sbjct: 1   MRVVFFLIVVLSCLIPWCPHGEDVPDKTGTYLLKSGDLVITDREFSEEL--ELKRAAYPY 58

Query: 72  GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
           G   N     ++ ++  ++D L     L +   D G+      +    A    F      
Sbjct: 59  GIQKNPNEYNTLVIE--LVDQLSEELVLRRAARDRGIYVTDQELK---ANEEAFRQD--- 110

Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
           +  D F   L    ++ + +       L    ++ 
Sbjct: 111 YPEDSFEKLLVENAVSHRFWRHRLKLSLLFDRLID 145


>gi|145355107|ref|XP_001421810.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582049|gb|ABP00104.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 95

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 280 QKEADEAF---QSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSL 332
           +   DE      ++  G+  F  +A++      +     LG F    +   +  D+ ++L
Sbjct: 15  EAAIDELLRYRDAVANGEATFADVAKKVSDCSSAKRGGDLGEFGPGQM-QRAFEDATYAL 73

Query: 333 AKKGDFTPVIHGSFGYVIA 351
            K G+ +  +    G  + 
Sbjct: 74  -KIGEMSEAVETDSGVHVI 91


>gi|157869307|ref|XP_001683205.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68224089|emb|CAJ04157.1| putative peptidyl-prolyl cis-trans isomerase [Leishmania major
           strain Friedlin]
          Length = 440

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 294 KKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           ++F+   +E            LG   K    D  + ++ F L ++G+ +  +    G  +
Sbjct: 378 EEFVAAVDEYCEVSAKKKRGDLGVVEKGTFAD-EIDEAAFKL-RRGEVSAPVETQLGIHL 435

Query: 351 AH 352
            +
Sbjct: 436 LY 437


>gi|55981257|ref|YP_144554.1| exonuclease SbcC [Thermus thermophilus HB8]
 gi|55772670|dbj|BAD71111.1| exonuclease SbcC [Thermus thermophilus HB8]
          Length = 966

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 64/185 (34%), Gaps = 11/185 (5%)

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
               +       V++ ++      +A    ++  K+     A   +++E   R + +   
Sbjct: 252 EALKARAEEMARVEERLSRAEEAERALPLWRDYQKKRAALQATEKALEEAEGRLRALEAR 311

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
              + F+ + ++  + A    ++   F       P  K    + PD +    +++E    
Sbjct: 312 REALGFSPEALERAQAAYAEAQDLKAFEALLARAPAGK-APASGPDPATAQARLEEV--- 367

Query: 475 RDRKLEEVLTDV------KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
             + LE +  ++       + W+ ++  E   ++  + +     EGK  R+    L   L
Sbjct: 368 -LKALEALGAELLRLRAWAEAWEALRAKEAALAEVGEALARLEAEGKEAREARDALALRL 426

Query: 529 LTTNQ 533
                
Sbjct: 427 KEAEA 431


>gi|17230169|ref|NP_486717.1| hypothetical protein all2677 [Nostoc sp. PCC 7120]
 gi|17131770|dbj|BAB74376.1| all2677 [Nostoc sp. PCC 7120]
          Length = 225

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 61/200 (30%), Gaps = 16/200 (8%)

Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
           Y  L      A  + +   + Q  ++      A   +++    F       K+E      
Sbjct: 33  YRELLIDQAIASIECTPEEIEQAKQEDPQQTTALATRKLRLEKFKQATWGHKVE------ 86

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISL 312
            + +   K +    +  T   L   +   A E +  +K K + F ++A +  +     + 
Sbjct: 87  -SYFLTQKAQL---DQVTYSLLRTRDMALAQELYFRIKAKEQSFAEIARQYSQGPEAQTG 142

Query: 313 GSFSKEYIPDVSLADSIFSL--AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
           G      +        +  L  ++ G   P      G  I  V   +          +K 
Sbjct: 143 GLIGPTPLTQPH-PQLVAKLRASQPGQLLPP--TRLGEWIVIVRLEQMVHAKLDDSTRKK 199

Query: 371 IANQMRITKASEKVKEDYKR 390
           + N++      E ++    +
Sbjct: 200 LLNKLFQEWLQESLQATLNK 219


>gi|307128260|ref|YP_003880291.1| PblB [Streptococcus pneumoniae 670-6B]
 gi|306485322|gb|ADM92191.1| PblB [Streptococcus pneumoniae 670-6B]
          Length = 2426

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 87/278 (31%), Gaps = 24/278 (8%)

Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN------QMRITKASEKVKEDY 388
           +G  T  I    G+  A +     +    F +    I        ++   +A E  +E  
Sbjct: 336 EGTITKQIKQQDGFE-AKIQAQIEAADKDFDQKVDKIKKDFNDQVELAKARAEEVKRELS 394

Query: 389 KRLEEFL--ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
             + +         + E  R+ +    +        ++ K   + ++   E    +    
Sbjct: 395 DTINQRFNSFDNGPLKEAKRKAEEALRNAGASSSLAQESKRIGLDSVARLEAFKSQTTSA 454

Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT----VKTAEEVSSK 502
              LS D  V       +     +  P + +   E+   V+   +T       +  ++ +
Sbjct: 455 QTALSGDLDVL---KRTIA---NDIRPKQAQAEAEIAKQVEALSRTKNELDGASTLLAQE 508

Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
           A ++ L+     + F+    +   +L     + +    N        ++      E+ K 
Sbjct: 509 AKRIELDSVARLEAFKSQTTSAQTALSGDLDVLKRTIANDIRPKQAQAEA-----EIAKQ 563

Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
               +     +  V +++    +   + +S LT + N 
Sbjct: 564 AEALSRTKNELAGVKSAQATYEETTTRRLSELTNLANG 601


>gi|154336511|ref|XP_001564491.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134061526|emb|CAM38556.1| hypothetical protein, unknown function [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1543

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 53/440 (12%), Positives = 121/440 (27%), Gaps = 64/440 (14%)

Query: 140  RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
             L  +    K+ +D    M++   V           N    + +R   E  + + +    
Sbjct: 939  ALYAKRWTPKDGLDAAKDMITELQVALAAKEEEAAKNAAELEEQRAEAEKLAAEVVEQRA 998

Query: 200  RHVPAIADPSN---------AVLTQW-------FEKYKDNYRAPEYKRISYILFDVHEKE 243
                  A+            A +  +        E    +   P  ++         +  
Sbjct: 999  EAEKLAAELVEQRAEAEKLAAEVAAFRAKRNAALEARDADGTLPVLEKAVAADEAAAQAL 1058

Query: 244  KKIEISNDELQA----EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
               +I++  L A    EY               EQ     +  A+   Q  + GK   ++
Sbjct: 1059 DPRQIADGPLYAVTLEEYRDRDAAVGQLAAELEEQRAEAEKLAAELVEQRAEAGKLAAEV 1118

Query: 300  AE---EQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
            A    ++  +L    +D +L    K   PD + A ++             H + G     
Sbjct: 1119 AAFCAKRNAALEARDADGTLPVLEKAVAPDEAAAQAL----------DPRHIADGP---- 1164

Query: 353  VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
            +  +              +A ++   +A    ++    LEE  A    +      ++  +
Sbjct: 1165 LYAVTLEEYRDRDAAVGQLAAELEEQRAE--AEKLAAELEEQRAEAGKLAAELEEKRAEA 1222

Query: 413  IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
              L       +    K  A +  K     ++                       ++ E  
Sbjct: 1223 EKLAAELEEKRAEAEKLAAELEEKRAEAEKL---------------------AAEVVEKR 1261

Query: 473  PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
               ++   E+     +  K     EE  ++A +L  E  ++      +   L        
Sbjct: 1262 AEAEKLAAELEEQRAEAEKLAAELEEKRAEAEKLAAELEEKRAEAEKLAAELEEQRAEAE 1321

Query: 533  QINRMDNENKFFGYDGISQV 552
            ++     E +       +++
Sbjct: 1322 KLAAEVVEQRAEAEKLAAEL 1341


>gi|126722647|ref|NP_001075625.1| huntingtin-interacting protein 1-related protein [Oryctolagus
           cuniculus]
 gi|32699406|gb|AAP86641.1| huntingtin interacting protein 1-related [Oryctolagus cuniculus]
          Length = 1068

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/199 (10%), Positives = 60/199 (30%), Gaps = 14/199 (7%)

Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
            G    + A +   +     +  +  + + +++   +A+++  E  + L E      S  
Sbjct: 385 KGQVNALEAELEEQRKQKQKALVD-NEQLRHELAQLRAAQQEAERSQGLREEAERKAS-- 441

Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
             +   +   +            +     A   K+  + +   ++    K+         
Sbjct: 442 --ATELRYQKLKEKHSALINTHAELLRKNADTAKQLTVTQQSQEEGARVKEQ-------- 491

Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
            +  Q+++     + KLEE    V++  + ++          + +    + G        
Sbjct: 492 -LAFQVEQVRRESEMKLEEQSDQVEQLQRELQAKTRELRHVQEALSRTEQSGSELSSRLD 550

Query: 523 NLGASLLTTNQINRMDNEN 541
            L A     +   R    +
Sbjct: 551 ALSAEKDALSGAVRQREAD 569


>gi|57652054|ref|YP_186639.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus COL]
 gi|57286240|gb|AAW38334.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus COL]
          Length = 2186

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAA 1411


>gi|22538156|ref|NP_689007.1| cell wall surface anchor family protein [Streptococcus agalactiae
           2603V/R]
 gi|22535064|gb|AAN00880.1|AE014282_22 cell wall surface anchor family protein [Streptococcus agalactiae
           2603V/R]
          Length = 826

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 58/180 (32%), Gaps = 19/180 (10%)

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV----DYIVLNN--RHVPAIA 206
                + ++       +      N  +D   +   +  S         ++   +   A A
Sbjct: 65  QTVKDVTAKAQANTQAIKDATAENAKIDAENKAESQRVSQLNAQTKAKIDAENKDAQAKA 124

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           D +NA L + ++      ++ E         +   + K  + +N +LQ +Y+     Y  
Sbjct: 125 DATNAQLQKDYQAKLAKIKSVEAYNAGVRQRNKDAQAK-ADATNAQLQKDYQAKLALYNQ 183

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
                        + +A+   QS+     F   A+ +G   ++      + +  PD S  
Sbjct: 184 -----------ALKAKAEADKQSINNVA-FDIKAQAKGVDNAEYGNSIMTAKTKPDGSFE 231


>gi|76798852|ref|ZP_00781062.1| cell wall surface anchor family protein [Streptococcus agalactiae
           18RS21]
 gi|76585800|gb|EAO62348.1| cell wall surface anchor family protein [Streptococcus agalactiae
           18RS21]
          Length = 835

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 58/180 (32%), Gaps = 19/180 (10%)

Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV----DYIVLNN--RHVPAIA 206
                + ++       +      N  +D   +   +  S         ++   +   A A
Sbjct: 74  QTVKDVTAKAQANTQAIKDATAENAKIDAENKAESQRVSQLNAQTKAKIDAENKDAQAKA 133

Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
           D +NA L + ++      ++ E         +   + K  + +N +LQ +Y+     Y  
Sbjct: 134 DATNAQLQKDYQAKLAKIKSVEAYNAGVRQRNKDAQAK-ADATNAQLQKDYQAKLALYNQ 192

Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
                        + +A+   QS+     F   A+ +G   ++      + +  PD S  
Sbjct: 193 -----------ALKAKAEADKQSINNVA-FDIKAQAKGVDNAEYGNSIMTAKTKPDGSFE 240


>gi|328950516|ref|YP_004367851.1| GTP-binding protein lepA [Marinithermus hydrothermalis DSM 14884]
 gi|328450840|gb|AEB11741.1| GTP-binding protein lepA [Marinithermus hydrothermalis DSM 14884]
          Length = 601

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 28/197 (14%)

Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
           +   I  Q R  +A E  ++    LE     G ++   + R    + D         D  
Sbjct: 21  LADRILQQTRAVQAREMREQFLDSLELERERGITIKAAAVRLAYTARDGHTYTLNLIDTP 80

Query: 427 G---------KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
           G         + +AA+     ++    G +     +  +AL     +   + +      R
Sbjct: 81  GHVDFNYEVSRALAAVEGVLLVVDATQGVEAQTIANFFLALEHDHVIIPVVNKIDLPSAR 140

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
             EEV          ++  E +   A + +    K G+   +I + +         + R+
Sbjct: 141 P-EEV---------ALEIEETLGLPAEEAIFASGKTGEGVDEILEAI---------VQRI 181

Query: 538 DNENKFFGYDGISQVFS 554
                       + +F 
Sbjct: 182 PPPKGDPEAPLKALIFD 198


>gi|282925643|ref|ZP_06333292.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            A9765]
 gi|282592423|gb|EFB97437.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            A9765]
          Length = 2186

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAA 1411


>gi|254504257|ref|ZP_05116408.1| M23 peptidase domain protein [Labrenzia alexandrii DFL-11]
 gi|222440328|gb|EEE47007.1| M23 peptidase domain protein [Labrenzia alexandrii DFL-11]
          Length = 449

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 21  LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
           +    ++ G        SG   V  V  +    +     ++  +  +  +I  + + +  
Sbjct: 49  IAASLIVTGAISYQVMRSG--VVAEVNAE---RTEVALQYQDRIARLRAEIERLNSRQLV 103

Query: 81  RSVGLDKKILDNLVSGATLDQ 101
               ++ +++D L     L+Q
Sbjct: 104 DRESVEIQVMDVLRRQQDLNQ 124


>gi|269941234|emb|CBI49622.1| LPXTG surface protein [Staphylococcus aureus subsp. aureus TW20]
          Length = 2186

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAA 1411


>gi|258452307|ref|ZP_05700320.1| cell wall surface anchor family protein [Staphylococcus aureus A5948]
 gi|257860032|gb|EEV82867.1| cell wall surface anchor family protein [Staphylococcus aureus A5948]
          Length = 2186

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAA 1411


>gi|87160867|ref|YP_494396.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus USA300_FPR3757]
 gi|151221861|ref|YP_001332683.1| hypothetical protein NWMN_1649 [Staphylococcus aureus subsp. aureus
            str. Newman]
 gi|161509974|ref|YP_001575633.1| cell surface anchored protein [Staphylococcus aureus subsp. aureus
            USA300_TCH1516]
 gi|221141488|ref|ZP_03565981.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus str. JKD6009]
 gi|262049065|ref|ZP_06021943.1| hypothetical protein SAD30_2270 [Staphylococcus aureus D30]
 gi|284024803|ref|ZP_06379201.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus 132]
 gi|294849917|ref|ZP_06790656.1| cell-wall-anchored protein SasC [Staphylococcus aureus A9754]
 gi|304380649|ref|ZP_07363320.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus ATCC BAA-39]
 gi|87126841|gb|ABD21355.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus USA300_FPR3757]
 gi|150374661|dbj|BAF67921.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            str. Newman]
 gi|160368783|gb|ABX29754.1| cell surface anchored protein [Staphylococcus aureus subsp. aureus
            USA300_TCH1516]
 gi|259162882|gb|EEW47446.1| hypothetical protein SAD30_2270 [Staphylococcus aureus D30]
 gi|294823256|gb|EFG39686.1| cell-wall-anchored protein SasC [Staphylococcus aureus A9754]
 gi|302751583|gb|ADL65760.1| cell-wall-anchored protein SasC [Staphylococcus aureus subsp. aureus
            str. JKD6008]
 gi|304340756|gb|EFM06685.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus ATCC BAA-39]
 gi|315197226|gb|EFU27565.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus CGS01]
 gi|320140777|gb|EFW32628.1| signal peptide, YSIRK family [Staphylococcus aureus subsp. aureus
            MRSA131]
 gi|320143784|gb|EFW35558.1| signal peptide, YSIRK family [Staphylococcus aureus subsp. aureus
            MRSA177]
 gi|329314431|gb|AEB88844.1| Cell surface anchored protein [Staphylococcus aureus subsp. aureus
            T0131]
          Length = 2186

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAA 1411


>gi|15924748|ref|NP_372282.1| Mrp protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|156980075|ref|YP_001442334.1| Mrp protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|255006544|ref|ZP_05145145.2| Mrp protein [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|14247530|dbj|BAB57920.1| Mrp protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|156722210|dbj|BAF78627.1| Mrp protein [Staphylococcus aureus subsp. aureus Mu3]
          Length = 1983

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAA 1411


>gi|15927333|ref|NP_374866.1| hypothetical protein SA1577 [Staphylococcus aureus subsp. aureus
            N315]
 gi|253315870|ref|ZP_04839083.1| hypothetical protein SauraC_06937 [Staphylococcus aureus subsp.
            aureus str. CF-Marseille]
 gi|258438322|ref|ZP_05689606.1| cell wall anchor domain-containing protein [Staphylococcus aureus
            A9299]
 gi|258443780|ref|ZP_05692119.1| cell wall anchor domain-containing protein [Staphylococcus aureus
            A8115]
 gi|282893250|ref|ZP_06301484.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            A8117]
 gi|296276050|ref|ZP_06858557.1| hypothetical protein SauraMR_06862 [Staphylococcus aureus subsp.
            aureus MR1]
 gi|13701552|dbj|BAB42845.1| SA1577 [Staphylococcus aureus subsp. aureus N315]
 gi|32968094|emb|CAD98830.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968096|emb|CAD98831.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968098|emb|CAD98832.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968100|emb|CAD98833.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968102|emb|CAD98834.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968104|emb|CAD98835.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968106|emb|CAD98836.1| fmtB-like protein [Staphylococcus aureus]
 gi|257848366|gb|EEV72357.1| cell wall anchor domain-containing protein [Staphylococcus aureus
            A9299]
 gi|257851186|gb|EEV75129.1| cell wall anchor domain-containing protein [Staphylococcus aureus
            A8115]
 gi|282764568|gb|EFC04694.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            A8117]
          Length = 2186

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAA 1411


>gi|269203394|ref|YP_003282663.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus ED98]
 gi|262075684|gb|ACY11657.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus ED98]
          Length = 2186

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAA 1411


>gi|325981959|ref|YP_004294361.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Nitrosomonas sp.
           AL212]
 gi|325531478|gb|ADZ26199.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Nitrosomonas sp.
           AL212]
          Length = 322

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 52/136 (38%), Gaps = 14/136 (10%)

Query: 141 LAREGINEKEYI---DHYTKMLSRTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
           + R  I   +Y    +   + L    ++        +  +  ++   +R   +  +  Y+
Sbjct: 55  IRRSNIRADQYESAREQLLESLIARQLIVDEAIRNKLDRTPEVMQARERANAQVIAQAYL 114

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE------IS 249
                 +  I  PS A +  +F+K  + +   +   ++ +     +  ++++       S
Sbjct: 115 ---QGIISKIEKPSKAEIEDYFQKNPELFAQRKQFDLTTVRIATSDVSEELKRVIDAAKS 171

Query: 250 NDELQAEYEKNKEKYF 265
            +E+    +KNK +YF
Sbjct: 172 IEEVVTWLDKNKIQYF 187


>gi|51557581|gb|AAU06431.1| surface antigen [Rickettsia parkeri]
          Length = 1907

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 94/281 (33%), Gaps = 25/281 (8%)

Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS--IDLPL 417
            T + +   ++I  +++I K  +K+K+  K L         + +   +  I +  + +  
Sbjct: 333 TTETLKSRAEEIETKIKIGKNKDKIKKLEKELTSKNNKADRLFQKIEKIDIPANKVSIKS 392

Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
            +         EV+A   ++  +          +K       D     V+   +   R++
Sbjct: 393 QETVPVTTASTEVSAFQAQQARINEARQGVFNKNKSS----GDN----VRKSSAGIKREK 444

Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
           K +E    + +  K  K  +  S KA ++     KE             ++    ++   
Sbjct: 445 KKQEAQKQLLEIKKQEKAIKTASDKAKEVAASAKKETSRTALRAMQDKMNIEENLKLLTP 504

Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYL 594
              N   G       +    +     P+ +G+  ++ +    + G   P++ + +    +
Sbjct: 505 VVYNSSTGPT-----YKQSPKAKPTIPLSHGVQRILGEQPEDEEGYLVPIKVQQQPYQKI 559

Query: 595 TQ---MMNKDLLD----SVIAYLKSQYSVTVHDNLIQRYLD 628
                  +KD+ +      I YL S      +   I   +D
Sbjct: 560 EDPIPSHSKDIYEAKVSQYINYLNSIQPNQSNQAQIDSVID 600


>gi|303320749|ref|XP_003070369.1| CDK-activating kinase assembly factor MAT1 family protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240110065|gb|EER28224.1| CDK-activating kinase assembly factor MAT1 family protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 395

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 56/159 (35%), Gaps = 10/159 (6%)

Query: 140 RLAREGINEKEYIDH--YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
            L +    ++ + D     ++  R  V+G+     R       +A   + E R     ++
Sbjct: 67  TLRKNRFRKQTFEDIGVEREVDIRKRVMGILNR--REEEFDSKRAWDDFLEQRE---EII 121

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYR---APEYKRISYILFDVHEKEKKIEISNDELQ 254
            N         + A L ++  +   + R     E +  +++L     +++         +
Sbjct: 122 TNLVYGTDVAKTEAQLAEYAAQNAASIRHNKTLESQESAFLLQQQTLEQEAFRQRRQAAR 181

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
            +Y++ +    +     + +L     ++A+   +  K G
Sbjct: 182 QDYDEARRAKLAGRQEIITRLATGTPEDAEAIAREAKHG 220


>gi|297245008|ref|ZP_06928885.1| cell-wall-anchored protein SasC [Staphylococcus aureus A8796]
 gi|297178088|gb|EFH37336.1| cell-wall-anchored protein SasC [Staphylococcus aureus A8796]
          Length = 2186

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPTAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAA 1411


>gi|297193962|ref|ZP_06911360.1| lipoprotein [Streptomyces pristinaespiralis ATCC 25486]
 gi|197723093|gb|EDY67001.1| lipoprotein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 216

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 37/133 (27%), Gaps = 6/133 (4%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
           T   VG Q++  S+     +                +   S  L +  L +L+    + +
Sbjct: 33  TAAVVGGQRIEVSTVQAKVRDVREAQQAAPQSAQLIK--DSGQLGRAKLYDLIVDRVVAK 90

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
             +D G+      +     R  L      +         L + G+   +  +   + +  
Sbjct: 91  AAQDAGVSVSRKEIQD--GRDELVEQSGGEEQLAA--MYLQQRGVAPDQVENAVRRDILV 146

Query: 162 TDVVGMFVGGMRP 174
             +         P
Sbjct: 147 GKIATAIGAENSP 159


>gi|302868559|ref|YP_003837196.1| ATP-binding region ATPase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302571418|gb|ADL47620.1| ATP-binding region ATPase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 845

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 103/326 (31%), Gaps = 24/326 (7%)

Query: 322 DVSLADSIFSLAK---KGDFTPVIHGSFGY--VIAHVSNIKPSFTVS--FQEVKKDIANQ 374
           D SLAD      +    G  + +   +FGY  VIA + ++ P+   S    E+  +I   
Sbjct: 135 DASLADVAAQRQRVRGDGLVS-LSAVAFGYRIVIADLDSVLPAVAQSGVTPELADEIRAS 193

Query: 375 MRITKASEKVKEDYKRLEEFLAL----GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
             +++A E V +    + + +A          E+          L   D   +      +
Sbjct: 194 AALSRARESVGQQQVAVLQAVAARRLTPALHAEVVAARSSQDEALREFDGLARPSWRALL 253

Query: 431 AAIPYKEQLLF--RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
                   +L   R+ G          V L  G+  W ++     +R   L +V   V  
Sbjct: 254 GRTLTGPDVLAGVRLDGAVSGTGVYEPVRLAGGAEQWSRVMT---SRADLLAQVQAAVND 310

Query: 489 DWKTV------KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
           D          +       +A  L +           + ++L   L T  Q  R   + +
Sbjct: 311 DIGNAADDLWMEQVRSAVLQAGVLTVMLVVAVFTALRVARSLVGQLSTLEQGARRVADVE 370

Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
                G  +  S P E  +      G++  V                  S +   +++  
Sbjct: 371 LPALVGRLRATSDPAEAQRLAEGAGGVAVPVVGRDEVGRVADAFNGVLRSAVDATVDQAR 430

Query: 603 LDSVIAYLKSQYSVTVHDNLIQRYLD 628
             ++++ + +     V   L ++ L 
Sbjct: 431 GRALVSAMITSVGRRV-QALTEQLLG 455


>gi|296811937|ref|XP_002846306.1| kinesin motor domain-containing protein [Arthroderma otae CBS
           113480]
 gi|238841562|gb|EEQ31224.1| kinesin motor domain-containing protein [Arthroderma otae CBS
           113480]
          Length = 792

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 46/165 (27%), Gaps = 28/165 (16%)

Query: 49  QKVPFSSFINSWKQELGMISQ------------------KIGFVVNSERARSVGLDKKIL 90
           Q++  +      + +   I Q                  +      +E A    L  + L
Sbjct: 274 QEITLNELATQHRNQSEKIRQDAKAEIEALRIQHRAELAETRRRFETELAVERQLRAQEL 333

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK---DNKFSHDVFVSRLAREGIN 147
           + + + ++L++    + L      +   + +     G    ++  + ++  S +      
Sbjct: 334 EQMAAQSSLEKQRGQLDLSNKDREIQDLLIQKERLQGDLEREHALNKELQQSSIVNANNT 393

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
                     + +R   +     G   S    D   +   E R  
Sbjct: 394 V-TLESSIRALKAR---IEFLESG---SKEQSDAFAKLDKELREA 431


>gi|315051326|ref|XP_003175037.1| carboxy-terminal kinesin 2 [Arthroderma gypseum CBS 118893]
 gi|311340352|gb|EFQ99554.1| carboxy-terminal kinesin 2 [Arthroderma gypseum CBS 118893]
          Length = 909

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 42/152 (27%), Gaps = 13/152 (8%)

Query: 47  GRQKVPFSSFIN---SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
            + +V          + +Q+      +      +E A    L  + L+ L + + L++  
Sbjct: 385 NQSEVIRQDAQAEVVALRQQHRAELAETRRRFEAEIAIERQLRAQELEQLAAQSFLEKQR 444

Query: 104 EDIGLEADHGRVWGEIARSPLFHGK---DNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
           + + L      +   +A+    H     ++  + ++  + +                   
Sbjct: 445 DKLDLSNKDREIQDLLAQRQRLHDDLEREHALNKELQQNSIVNSNNT-ATLESSIRA--- 500

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
              +          S    D   +   E R  
Sbjct: 501 ---LKAKIEFLESGSKEQSDAFAKLDKELREA 529


>gi|285817438|gb|ADC37925.1| Predicted cell-wall-anchored protein SasC (LPXTG motif)
            [Staphylococcus aureus 04-02981]
          Length = 2186

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPTAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAA 1411


>gi|2194112|gb|AAB61088.1| unknown [Oxytricha fallax]
          Length = 1088

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 78/246 (31%), Gaps = 42/246 (17%)

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
            N ++ +L  + ++    +  +  +                 L+   + + +     +  
Sbjct: 778 QNEFQNQLNEVERQNQKELRRQEIKWNN-------------VLENIQKQVHIRVSDLKKQ 824

Query: 117 GEIAR---SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
             + +      F  +  KF+   F +           +I        +  +V        
Sbjct: 825 QNLLKSELINQFQTEFTKFTQKSFKN-----------FIRVVRSNNYQEQLVQTL----- 868

Query: 174 PSNLLLDQAKRFYFE-NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
                 DQ + +  +  +   Y+    ++V    D +   L +  +  ++  +  + +  
Sbjct: 869 ------DQKEDYIQQLQKDKQYLEQELQNVQQTLDQTEDKLQRLRKDRENELQNQKREYF 922

Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP---EIRTVEQLVFPNQKEADEAFQS 289
             +     E ++K       L+    + K+++      + + + QL   +Q E  +  ++
Sbjct: 923 RVLETAKKEVQRKYSDELKNLKNYLREFKKRFLDQLLSKEKEIRQLHLQHQLEKTQLQEN 982

Query: 290 LKKGKK 295
           L+  + 
Sbjct: 983 LQSSQS 988


>gi|71661996|ref|XP_818011.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70883237|gb|EAN96160.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1209

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 97/295 (32%), Gaps = 28/295 (9%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
            + +     D+    K +     E+    ++ +++    +    EQL+   Q+ ADE  +
Sbjct: 670 SRELFMANSDLEASTKTVSALEAEVNELKQRMQQQQIKRDRVHEEQLLKLEQEYADEQAR 729

Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
            L +   +  L  ++ +     +      +++ ++   +       K D++         
Sbjct: 730 RLAQ---YEALKADKNEQAIQFT------DFMAEMETKEKEALKRTKEDYS--------- 771

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
               + +++       +++  ++ ++     A  +     KR E+       + E+    
Sbjct: 772 --LKIQSLRDRADR-LRQLIDELQHEQDAHLAEVREVAAKKRAEDNERQRKVLKELEEEN 828

Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
             + ++        ++           +  LL     K     ++    L   + + +  
Sbjct: 829 HQLLMERDEDTKRTENYCALIEDETDVEVTLLKEDVEKRRKEQEEEVATLQANNDLLLSR 888

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKT----AEEVSSKANQLVLEYSKEGKNFRD 519
           +  I A   +LE V  DV++  +   T     E        L  E+   G+   +
Sbjct: 889 ENIIRA---ELEAVKADVREKLRQQSTLESQIEAAKRDIGALTQEFKDRGETIAE 940


>gi|262193738|ref|YP_003264947.1| hypothetical protein Hoch_0413 [Haliangium ochraceum DSM 14365]
 gi|262077085|gb|ACY13054.1| hypothetical protein Hoch_0413 [Haliangium ochraceum DSM 14365]
          Length = 549

 Score = 38.8 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 32/131 (24%), Gaps = 36/131 (27%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            + V  +G Q +  +      ++ L      +        A+         D  V    L
Sbjct: 243 ETEVARLGGQPITRAE-----QRVLAGYQAALAQHEYWRIAKMQ------FDKYVDRFLL 291

Query: 100 DQFIEDIGL--------------EADHGRVWGEIARSPLFHGKDNKFSHDV--------- 136
            +  E + +                    V   IA +P +    N F             
Sbjct: 292 AREAEALAVEVSELEQMERGRMPAVSDAEVRAFIAENPEYKTAQNGFERARDNVRRLREQ 351

Query: 137 --FVSRLAREG 145
             + S L R  
Sbjct: 352 GAYESLLKRLR 362


>gi|282927885|ref|ZP_06335496.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            A10102]
 gi|282590395|gb|EFB95474.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            A10102]
          Length = 2186

 Score = 38.8 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPTAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAA 1411


>gi|257794139|ref|ZP_05643118.1| cell wall anchor protein [Staphylococcus aureus A9781]
 gi|258415843|ref|ZP_05682114.1| cell wall anchor protein [Staphylococcus aureus A9763]
 gi|258420672|ref|ZP_05683611.1| cell wall anchor domain-containing protein [Staphylococcus aureus
            A9719]
 gi|258445991|ref|ZP_05694167.1| cell wall surface anchor family protein [Staphylococcus aureus A6300]
 gi|258454191|ref|ZP_05702162.1| cell wall anchor domain-containing protein [Staphylococcus aureus
            A5937]
 gi|295406067|ref|ZP_06815875.1| cell-wall-anchored protein SasC [Staphylococcus aureus A8819]
 gi|257788111|gb|EEV26451.1| cell wall anchor protein [Staphylococcus aureus A9781]
 gi|257839436|gb|EEV63909.1| cell wall anchor protein [Staphylococcus aureus A9763]
 gi|257843276|gb|EEV67686.1| cell wall anchor domain-containing protein [Staphylococcus aureus
            A9719]
 gi|257855233|gb|EEV78172.1| cell wall surface anchor family protein [Staphylococcus aureus A6300]
 gi|257863643|gb|EEV86400.1| cell wall anchor domain-containing protein [Staphylococcus aureus
            A5937]
 gi|294969064|gb|EFG45085.1| cell-wall-anchored protein SasC [Staphylococcus aureus A8819]
 gi|312830134|emb|CBX34976.1| LPXTG-motif cell wall anchor domain protein [Staphylococcus aureus
            subsp. aureus ECT-R 2]
 gi|315130604|gb|EFT86590.1| hypothetical protein CGSSa03_10185 [Staphylococcus aureus subsp.
            aureus CGS03]
 gi|329727589|gb|EGG64045.1| Gram-positive signal peptide protein, YSIRK family [Staphylococcus
            aureus subsp. aureus 21172]
          Length = 2186

 Score = 38.8 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPTAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAA 1411


>gi|261492475|ref|ZP_05989029.1| autotransporter adhesin [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261311838|gb|EEY12987.1| autotransporter adhesin [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 877

 Score = 38.8 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 54/186 (29%), Gaps = 31/186 (16%)

Query: 358 PSFTVSFQEVKKDI-------ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
            +     +E++  I         ++     ++ + +  +          ++ E       
Sbjct: 439 ANKERELEELENQINAFTLTDEEKLAEDVKNDLISKLDEAKAALAKNQQTLKEKHDELLG 498

Query: 411 VSIDLPLVDF--AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
           ++  L        GK+   +   A    E  +   FG D   + ++ +AL   S      
Sbjct: 499 LNNKLDSSPLVKNGKNALAEGTNAFASGENAI--AFGTDSQATGNNAIALGANS------ 550

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
                           + +      K A+ +  KA  L       G +   IG N+G S 
Sbjct: 551 --------------KANAESAIAIGKGAQALKEKALALGENAIANGASAIAIGDNIGVSG 596

Query: 529 LTTNQI 534
                I
Sbjct: 597 EKAVGI 602


>gi|32968090|emb|CAD98828.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968092|emb|CAD98829.1| fmtB-like protein [Staphylococcus aureus]
          Length = 1972

 Score = 38.8 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 94/285 (32%), Gaps = 28/285 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                +   D      +Q + K+   ++ A  ++Q +  V+     
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAATN 1413


>gi|148244641|ref|YP_001219335.1| hypothetical protein COSY_0492 [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326468|dbj|BAF61611.1| hypothetical protein [Candidatus Vesicomyosocius okutanii HA]
          Length = 297

 Score = 38.8 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 52/166 (31%), Gaps = 21/166 (12%)

Query: 245 KIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEAD----------EAFQSLKKG 293
            IE+++ E+  +  K        E    + Q+   +  + D          +  + + KG
Sbjct: 131 NIELTDVEISKQLSKTPNHLNKLEKQIRIAQITINSTNQVDSNRLIKDRLIDLSEKINKG 190

Query: 294 KKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
             F  L +   +     +D      +   +P  +   S+  L   G+ +        + I
Sbjct: 191 DSFSILKKIYSQDNFYKNDSESIWLNLSKLPK-AFQQSLKGLL-VGEISQPFKIGQVWRI 248

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
             + + +     S      ++  ++   K         K++ +   
Sbjct: 249 VKIIDKR-----SVDNYLVELKAKLIRQKEDTYFYNWVKKIRKEAY 289


>gi|315126152|ref|YP_004068155.1| hypothetical protein PSM_A1061 [Pseudoalteromonas sp. SM9913]
 gi|315014666|gb|ADT68004.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 396

 Score = 38.8 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 12/208 (5%)

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR---ISYILFDVHEK 242
             + R  +      + + A  +     +   +E  K +   P  +    I+ ++      
Sbjct: 181 LIKKRQFNIAFSKAKPILAKQNI---DIVHLYEIAKGDILRPSIQSWLGINTMMHMQSPV 237

Query: 243 EKKIE--ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
            +K+E  ++ +E++A Y+ NK ++            F ++  A   F++L   K   Q  
Sbjct: 238 LEKLEKQVNKNEIKAFYQANKSQFKFLSHVKAHGAQFAHRANAVG-FRTLAGNKTLKQAL 296

Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIKPS 359
              GK        S          +    F+  K+   +PVI    G +V+ H    +  
Sbjct: 297 VISGKQDIYAQYNSELNRKNKSSWVVQLAFT-TKENTISPVIRTPSGEWVVIHSYEHQFE 355

Query: 360 FTVSFQE-VKKDIANQMRITKASEKVKE 386
           +     E V+      +   KA ++ ++
Sbjct: 356 YFSPEDETVRYQATKAIAKQKAVQQYED 383


>gi|210608663|ref|ZP_03287940.1| hypothetical protein CLONEX_00119 [Clostridium nexile DSM 1787]
 gi|210152920|gb|EEA83926.1| hypothetical protein CLONEX_00119 [Clostridium nexile DSM 1787]
          Length = 344

 Score = 38.8 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 110/386 (28%), Gaps = 96/386 (24%)

Query: 5   IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP--FSSFINSWKQ 62
           +R   +    K+ +        +  ++    S   + TV +VG  K+P   ++F   ++Q
Sbjct: 1   MRNLKK----KVVVFATAASLAVVSMTGCA-SFENADTVATVGGDKIPAGVANFYARYQQ 55

Query: 63  ELGMISQKIGFVVNSER---------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
             GMI   +G ++                  +   ++D L     L+  + +  +     
Sbjct: 56  --GMIETNLGSMLGDNMWTQEVSEGKTYEDNVKDSVMDALQQMYILEDHMAEYEVVLTDE 113

Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
                I           KF                          L   ++V        
Sbjct: 114 E-KSAI------QEAAKKFDEG---------------------NELEAKELVSG------ 139

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
            +  +         + +  D +  +        + S+    Q         ++ +Y    
Sbjct: 140 ETEYVERVLTLLTIQKKMTDAVTKDVST-----EVSDEEAAQ---------KSMQYVSFP 185

Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
           Y   D     K   ++++E                           ++ A    +  K  
Sbjct: 186 YTTTDEEGNSK--TLTDEE-----------------------KAALKETAAAFLEGAKAA 220

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
           + F   A EQGK     +    S+   P   L  +  SL   G FT VI    G  +A V
Sbjct: 221 EDFAAYATEQGKEAQTAT--FDSESTSPAAELIAAADSLG-VGGFTDVIETENGLYVAKV 277

Query: 354 SNIKPSFTVSFQEVKKDIANQMRITK 379
           +++           K+ I N  +  K
Sbjct: 278 TSLLDRDAT--DAKKETIVNSRKSEK 301


>gi|32968130|emb|CAD98848.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968132|emb|CAD98849.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968134|emb|CAD98850.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968136|emb|CAD98851.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968138|emb|CAD98852.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968140|emb|CAD98853.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968142|emb|CAD98854.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968144|emb|CAD98855.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968146|emb|CAD98856.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968148|emb|CAD98857.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968150|emb|CAD98858.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968152|emb|CAD98859.1| fmtB-like protein [Staphylococcus aureus]
          Length = 2124

 Score = 38.8 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 94/285 (32%), Gaps = 28/285 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1117 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1176

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1177 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1236

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1237 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1289

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1290 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1342

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                +   D      +Q + K+   ++ A  ++Q +  V+     
Sbjct: 1343 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAATN 1387


>gi|320033160|gb|EFW15109.1| CDK-activating kinase assembly factor MAT1 [Coccidioides posadasii
           str. Silveira]
          Length = 395

 Score = 38.8 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 56/159 (35%), Gaps = 10/159 (6%)

Query: 140 RLAREGINEKEYIDH--YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
            L +    ++ + D     ++  R  V+G+     R       +A   + E R     ++
Sbjct: 67  TLRKNRFRKQTFEDIGVEREVDIRKRVMGILNR--REEEFDSKRAWDDFLEQRE---EII 121

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYR---APEYKRISYILFDVHEKEKKIEISNDELQ 254
            N         + A L ++  +   + R     E +  +++L     +++         +
Sbjct: 122 TNLVYGTDVAKTEAQLAEYAAQNAASIRHNKTLESQESAFLLQQQTLEQEAFRQRRQAAR 181

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
            +Y++ +    +     + +L     ++A+   +  K G
Sbjct: 182 QDYDEARRAKLAGRQEIITRLATGTPEDAEAIAREAKHG 220


>gi|331090629|ref|ZP_08339480.1| hypothetical protein HMPREF9477_00123 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401069|gb|EGG80664.1| hypothetical protein HMPREF9477_00123 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 346

 Score = 38.8 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 92/262 (35%), Gaps = 22/262 (8%)

Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY-FENRSVDY-IVLNNR 200
           ++ + E +Y  +    +  +++             +L+  K  Y  E+   DY + L   
Sbjct: 54  QQAMAEAQYGTYMGDDMWESEMAESETMEDTMKKRILETLKTLYVLEDHMKDYKVELTAE 113

Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRA-PEYKRISYILFDVHEKEKKI-------EISNDE 252
               I   +   L    +  K+   A  E       L  + +K ++         +S++E
Sbjct: 114 EKQKIDKTAEEFLKANKDAAKEVVSADKETVSRVLELLTIQDKMREAMTADVDKNVSDEE 173

Query: 253 L--QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK----KFIQLAEEQGKS 306
              ++          + E  T   +    +K   E     ++G      F   A+E G  
Sbjct: 174 AAQKSMQYVFFTFTKTEENGTSSTISDDEKKTLKEKATKFQEGAKTQADFAAYAKESGYE 233

Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
              ++    + +  P   L   +  L K G+ T V+    GY +A V+++         E
Sbjct: 234 A--VTKTFDADDVDPSEVLIKEVDKL-KAGEMTGVVEAPSGYYVAKVTSVLDRKAT--DE 288

Query: 367 VKKDIANQMRITKASEKVKEDY 388
            K+ I  + R  K  E++ + +
Sbjct: 289 KKQTIIAE-RENKKYEELVDKF 309


>gi|87303268|ref|ZP_01086061.1| hypothetical protein WH5701_12458 [Synechococcus sp. WH 5701]
 gi|87282163|gb|EAQ74124.1| hypothetical protein WH5701_12458 [Synechococcus sp. WH 5701]
          Length = 267

 Score = 38.8 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 2/95 (2%)

Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSK-EYIPDVSL 325
           +  T   L   ++  ADE +  + +G+  F  LAE   +    ++ G            L
Sbjct: 128 DQLTYSLLRVSDRDLADELYHQVLEGEQDFATLAETYSEGNETVTRGLIGPISATAGHPL 187

Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
                 +   G           +V+  +    P+ 
Sbjct: 188 LIEKLRVGSPGQIWAPFEIENVWVVVRLEQRFPAE 222


>gi|306833054|ref|ZP_07466185.1| peptidyl-prolyl cis-trans isomerase [Streptococcus bovis ATCC
           700338]
 gi|304424763|gb|EFM27898.1| peptidyl-prolyl cis-trans isomerase [Streptococcus bovis ATCC
           700338]
          Length = 352

 Score = 38.8 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 66/213 (30%), Gaps = 23/213 (10%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +V M    +  S+           +   ++ I+         +  S+  +T+ + K   +
Sbjct: 48  LVTMKGNTITVSDFYSAAKSSKSSQQTMLNLILSRVFEDQYGSKVSDKEVTEAYNKTASS 107

Query: 224 YRAPEYKRISYILFDVHEKEKKIEIS------------NDELQAEYEKNKEKYFSPEIRT 271
           Y +     +          +++I  S            +      Y++  + Y      T
Sbjct: 108 YGSSFSSALQAAGLTTDTYKQQIRTSMLVEYAVKEAAKDKLTTKNYKEAYKDYTPDTTAT 167

Query: 272 VEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
           V  +   N+ +A+         G  F ++A+E   +         S +      + D+ F
Sbjct: 168 V--VALSNEDKANSVHDQATADGADFDKIAKEN-TTAKKTEYTFDSADTKLPTDVRDAAF 224

Query: 331 SLAKKGDFTPVIHG------SFGYVIAHVSNIK 357
               +G  + VI        S+ Y I   +   
Sbjct: 225 K-QNEGSVSDVIKVMNSSTYSYTYYIVKTTKKT 256


>gi|32968108|emb|CAD98837.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968110|emb|CAD98838.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968112|emb|CAD98839.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968114|emb|CAD98840.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968116|emb|CAD98841.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968118|emb|CAD98842.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968120|emb|CAD98843.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968122|emb|CAD98844.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968124|emb|CAD98845.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968126|emb|CAD98846.1| fmtB-like protein [Staphylococcus aureus]
 gi|32968128|emb|CAD98847.1| fmtB-like protein [Staphylococcus aureus]
          Length = 2133

 Score = 38.8 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 94/285 (32%), Gaps = 28/285 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1112 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1171

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1172 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1231

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1232 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1284

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1285 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1337

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                +   D      +Q + K+   ++ A  ++Q +  V+     
Sbjct: 1338 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAATN 1382


>gi|258448281|ref|ZP_05696408.1| cell wall anchor domain-containing protein [Staphylococcus aureus
            A6224]
 gi|257858520|gb|EEV81396.1| cell wall anchor domain-containing protein [Staphylococcus aureus
            A6224]
          Length = 1974

 Score = 38.8 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 94/285 (32%), Gaps = 28/285 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPTAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                +   D      +Q + K+   ++ A  ++Q +  V+     
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAATN 1413


>gi|269125278|ref|YP_003298648.1| hypothetical protein Tcur_1024 [Thermomonospora curvata DSM 43183]
 gi|268310236|gb|ACY96610.1| hypothetical protein Tcur_1024 [Thermomonospora curvata DSM 43183]
          Length = 226

 Score = 38.8 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 17/161 (10%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMIS----QKIGFVVNSERARSVGLD-------KKIL 90
           + V +G +++  +S   + +Q            +     S   + + LD       +  L
Sbjct: 29  SAVIIGDERITTASLDRTVRQWNEQFRADPEANMKRSRTSAPGQQLPLDSVSESEMRLAL 88

Query: 91  DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
            +LV     D+   + G++A + RV   I +   F G+    S  + +      G     
Sbjct: 89  SHLVRIRISDRVAREQGIDAGNSRVDRLIEQ---FGGQREAESTTLALGL--PVGYTRDL 143

Query: 151 YID-HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
           + D H  + L R        G  R           +    R
Sbjct: 144 FRDLHIQQELLRRYGDDGVQGSERNVQANRRAVALYTETAR 184


>gi|148268234|ref|YP_001247177.1| cell wall anchor domain-containing protein [Staphylococcus aureus
            subsp. aureus JH9]
 gi|150394302|ref|YP_001316977.1| cell wall anchor domain-containing protein [Staphylococcus aureus
            subsp. aureus JH1]
 gi|147741303|gb|ABQ49601.1| LPXTG-motif cell wall anchor domain [Staphylococcus aureus subsp.
            aureus JH9]
 gi|149946754|gb|ABR52690.1| LPXTG-motif cell wall anchor domain [Staphylococcus aureus subsp.
            aureus JH1]
          Length = 2186

 Score = 38.8 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D +   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEENAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAINQINQNQTNDQVDTTTNQ-------AVNAIDNVEAEVVIKPTAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAA 1411


>gi|294810228|ref|ZP_06768893.1| hypothetical protein CW3_4061 [Bacteroides xylanisolvens SD CC 1b]
 gi|294442585|gb|EFG11387.1| hypothetical protein CW3_4061 [Bacteroides xylanisolvens SD CC 1b]
          Length = 327

 Score = 38.8 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 13/89 (14%)

Query: 22  FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
              FL   ++     ++ +  V  V  +++  S   +  KQE+  I              
Sbjct: 5   LFSFLF--IACNTPVINKNDVVAEVNGEQILLSELASQSKQEIFDI-----------LNT 51

Query: 82  SVGLDKKILDNLVSGATLDQFIEDIGLEA 110
           +  +  ++L  L+    L+   +   +  
Sbjct: 52  AYEIKSRVLAGLIKQKLLEDAAKKENMSL 80


>gi|169350365|ref|ZP_02867303.1| hypothetical protein CLOSPI_01132 [Clostridium spiroforme DSM 1552]
 gi|169293148|gb|EDS75281.1| hypothetical protein CLOSPI_01132 [Clostridium spiroforme DSM 1552]
          Length = 331

 Score = 38.8 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 69/245 (28%), Gaps = 34/245 (13%)

Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM---FVGGMRPSNLLLDQA 182
               N F+ D+F             +     K++                    +     
Sbjct: 41  KSDKNIFADDIFADITNTNRGKSAYFEAILQKLMDDKFPTDKDMEIDASRTVEQIQTYYE 100

Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
            ++  +       VL +     + +   A++  + +             + Y+  +    
Sbjct: 101 AQYGDQAEDQIKTVLASSGYSTLDEYEKAMVQAYQKSN---------FLLDYVKNNF--- 148

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ---SLKKGKKFIQL 299
                  ++     Y     ++ S    ++     P Q+E  +  Q   +L  G  F ++
Sbjct: 149 -------DEVFDDYYTYATPRFASIIKVSIADSENPTQEETAKIEQISTALASGTSFGEV 201

Query: 300 AEEQGKS----LSDISLGSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
           A +        ++   LG               +   IF L   G+ +  I G+ GY   
Sbjct: 202 ATQYSDDSTTKVNKGGLGVVDTTSGLSSTYGSEVESKIFEL-NAGEVSEAISGTDGYYFV 260

Query: 352 HVSNI 356
            V++ 
Sbjct: 261 SVTST 265


>gi|254423718|ref|ZP_05037436.1| hypothetical protein S7335_3874 [Synechococcus sp. PCC 7335]
 gi|196191207|gb|EDX86171.1| hypothetical protein S7335_3874 [Synechococcus sp. PCC 7335]
          Length = 252

 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 15/162 (9%)

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSD 309
            ++++ + + K +    +  T   +   N   A E +  L   G  F +LA +  +    
Sbjct: 100 AQIESYFLERKAQL---DQVTYSLIRTKNASLAQELYFRLNDDGASFAELASQYSEGQES 156

Query: 310 ISLGSFSKEYI-PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
            + G      +     +   + S++K     P        VI  +   +P+    F E  
Sbjct: 157 KTGGVVGPVELNVPHPVLSKMLSVSKPKQLWPPTQIGEWLVITRLEQFEPAK---FDE-- 211

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
                 MR    +E+ K    +  + +++ T + E+S +  +
Sbjct: 212 -----NMRKRLLAERFKAWLSQQIQTVSVRTIIPEVSDKAGL 248


>gi|32170809|gb|AAP57685.1| GelI [Sphingomonas elodea]
          Length = 300

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN----RHVP 203
            +       + L+   ++   +         LD+   F  + R  D ++L +    +   
Sbjct: 56  PQGTDRKLAEQLALQRIIERKILSKIAREQKLDKTPSFLIQQRRADELILTSMLRDKIAG 115

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
            I+ P++A + Q+   + D +   +   I  I+F       K +
Sbjct: 116 GISQPTDADVAQYQAAHPDRFAQRKVYSIEQIVFPPPSSSDKFK 159


>gi|196003640|ref|XP_002111687.1| hypothetical protein TRIADDRAFT_55968 [Trichoplax adhaerens]
 gi|190585586|gb|EDV25654.1| hypothetical protein TRIADDRAFT_55968 [Trichoplax adhaerens]
          Length = 7710

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 101/332 (30%), Gaps = 45/332 (13%)

Query: 197  LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
              ++    +   +     +  E  K N +  E +           ++  +E  +  ++  
Sbjct: 6824 FVDKQEQELEKETLEQEKELSEVRKKNVKEAEKQA-----MIAGIQQNGVEAGDLIVRRV 6878

Query: 257  YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
             E+          +  E     +  +A       +  ++   LA+ Q        L    
Sbjct: 6879 LEQRHADEMKALEKQFEAERKKSVDDALTVLLKKQAAEREAMLAKHQS------ELEDLE 6932

Query: 317  KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
               +    L     +L  K              ++ +           +  +  +   + 
Sbjct: 6933 NSDLAPDELEQQKSNLLNKQQLE----------LSKLEQKHEDQRKRLE--RSTLT-DLE 6979

Query: 377  ITKASEKVK---EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
            +  A+EK+K   + YK   + L+  T   + + + +   +    +D   K ++       
Sbjct: 6980 VKFANEKLKLKEQQYKEYADALSQLTPEQDAAVKVEKAKVAAQDLDNLRKKLE------- 7032

Query: 434  PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW--- 490
                  + R   ++    + +         +   IK+     +++++     +K+D    
Sbjct: 7033 ------VQRQEQEEKLKQERNAFETQAEDDLAKAIKDFDKQLEKEMDLQKQKLKQDIEEL 7086

Query: 491  --KTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
              +  K  EE   +A Q +    K G +  ++
Sbjct: 7087 DARKTKAIEEKKEQAKQELEAKQKSGSSKEEL 7118


>gi|71660950|ref|XP_817503.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70882699|gb|EAN95652.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1587

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 49/461 (10%), Positives = 149/461 (32%), Gaps = 13/461 (2%)

Query: 176  NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
            +   +Q +R     +  D +    + +    +  N+ L +     ++     +  R  Y 
Sbjct: 885  DEYTNQIQRSNQLQQENDTLRQQLQQLSDDMETINSQLREAAADNQN---LSDQLRAKYE 941

Query: 236  LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
                     +      E Q    +NK    + +   +E+L   N+K ADE  +     +K
Sbjct: 942  EIVKANNTIQSLYRQHETQENELQNKSIENAKQAEELEKLTIENEKLADELEKLATDNEK 1001

Query: 296  FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
                 E++      ++     ++   +  LAD +   A + +               +++
Sbjct: 1002 LADELEQKAAENERLA-DELEQKAAENERLADELEQKAAENERLADELEQKAAENERLAD 1060

Query: 356  IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
                     + +  ++  +           E  ++  E   L   +++ +   + ++ +L
Sbjct: 1061 ELEQKAAENERLADELEQKTAEN--ERLADELEQKAAENERLADELEQKAAENERLADEL 1118

Query: 416  PLVDFAGKDVKGKEVAAIPYKEQLLFRVF---GKDDPLSKDHTVALPDGSYMWVQIKESI 472
                   + +  +        E+L   +     +++ L+ +      +   +  ++++  
Sbjct: 1119 EQKTAENERLADELEQKAAENERLAEELEQKAAENEKLADELEQKAAENERLADELEQKA 1178

Query: 473  PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
               +R  +E+     ++ K     E+ +++  +L  E  ++      +   L        
Sbjct: 1179 AENERLADELEQKAAENEKLADELEQKAAENERLADELEQKAVENEKLADELEQKAAENE 1238

Query: 533  QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
            ++     +          ++     E  K        +    K+ +       E ++   
Sbjct: 1239 RLADELEQKAAENERLADELEQKAAENEKLADELEQKAAENEKLADELEQKAAENERLAD 1298

Query: 593  YLTQMMNKDLLDSVIAYLKSQY--SVTVHDNLIQRYLDGEK 631
             L Q   ++  + +   L+ +   +  + D L Q+  + E+
Sbjct: 1299 ELEQKAAEN--ERLADELEQKAAENEKLADELEQKAAENER 1337


>gi|329850880|ref|ZP_08265725.1| PPIC-type PPIASE domain protein [Asticcacaulis biprosthecum C19]
 gi|328841195|gb|EGF90766.1| PPIC-type PPIASE domain protein [Asticcacaulis biprosthecum C19]
          Length = 445

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 57/187 (30%), Gaps = 17/187 (9%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
           ++SV    +         KQ + ++    G  V  E        ++ ++ LV      Q 
Sbjct: 60  LISVNDDMITSYDL----KQRMLLLIVTSGVQVTQE--NYAAFQQQAINGLVDERLQMQE 113

Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
           ++   ++ D   +  E+ R     G       +  ++ L + GI               +
Sbjct: 114 LDHWKVKVDDADINEELERMASQSGLTG----EQLLTELKKVGIEPATLKSQIRAETGWS 169

Query: 163 DVVG------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
            +VG        VG  +    +         +   V  I L+      I + +     Q 
Sbjct: 170 RLVGGRYQSNAKVGSAQVDGTMDRIVADGQKQQYLVAEIFLDPAQAGGIEN-AQKGAQQL 228

Query: 217 FEKYKDN 223
           + + +  
Sbjct: 229 YNQLQAR 235


>gi|332968862|gb|EGK07909.1| hypothetical protein HMPREF0476_1616 [Kingella kingae ATCC 23330]
          Length = 318

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 42/144 (29%), Gaps = 12/144 (8%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
           +S ++ V    + +     + ++        +     ++      L +     LV  + L
Sbjct: 29  NSVLMEVNSSIITYGDVSRTVRE--------LKSRPTNKDIPEAQLVQAAKMQLVERSLL 80

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
                   L      +  E+ R        +K +     ++ A  G  ++ Y     K L
Sbjct: 81  ADAARQQQLRVPEAGIDEELQR----RAAQDKTTVAALYAKAASVGYTKESYRLEVAKDL 136

Query: 160 SRTDVVGMFVGGMRPSNLLLDQAK 183
               ++      +  +   + +  
Sbjct: 137 LIAHMLSNLNSDINITEAQIQEYA 160


>gi|227545662|ref|ZP_03975711.1| endo-alpha-N-acetylgalactosaminidase [Bifidobacterium longum subsp.
            infantis ATCC 55813]
 gi|227213778|gb|EEI81617.1| endo-alpha-N-acetylgalactosaminidase [Bifidobacterium longum subsp.
            infantis ATCC 55813]
          Length = 1947

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 111/345 (32%), Gaps = 36/345 (10%)

Query: 195  IVLNNRHVPAIADPSNAV--LTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIE---I 248
            I L           ++A    T  ++  K ++ A E    +   +     +         
Sbjct: 1606 ITLTLADGTTKDVVTDAEFSTTTMWQ--KASFDAVENVTAVRLTVLSSAGQSDSQANKFA 1663

Query: 249  SNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL--AEEQGK 305
            S  EL+   ++  E+   +P+   +         +A+   +S    + +  L  A E  +
Sbjct: 1664 SAAELRLTTDREVEEETVAPDKTDLN----DTIAKANGLKESDYTAESWTALVKAREAAQ 1719

Query: 306  SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
            +++D    +     +   +L  +I  L K G+         G V  + ++++ +   + +
Sbjct: 1720 AVADNDKATAYDVALALTNLESAIAGLEKTGEEPGP-----GPVEVNKTDLQTAVNKASK 1774

Query: 366  EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
              K D         A E +K   + L+   A    +D      +     L        + 
Sbjct: 1775 LEKADYTTNSWEAFA-EALKAAQQVLDNKNATQQDVDTALSALQDAISKLEAATEPKPNP 1833

Query: 426  KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
            +   V         + +    +  L  D +          ++      A  +K  EV  +
Sbjct: 1834 E-PGVVDKAALNATINKAAAINLGLYTDDSAN-------ALR------AALKKAREVSDN 1879

Query: 486  VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
                 K V  A E   KA   +++     K   ++  N G+ + T
Sbjct: 1880 SNATQKQVDAAREALEKAIAGLVKRPAA-KGDGNVVSNTGSDVAT 1923


>gi|329733156|gb|EGG69493.1| Gram-positive signal peptide protein, YSIRK family [Staphylococcus
            aureus subsp. aureus 21193]
          Length = 2186

 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 94/285 (32%), Gaps = 28/285 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNEEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV---FGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKKANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAFNQINQNQTNDQVDATTNQ-------AVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                +   D      +Q + K+   ++ A  ++Q +  V+     
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAATN 1413


>gi|291544303|emb|CBL17412.1| PPIC-type PPIASE domain [Ruminococcus sp. 18P13]
          Length = 489

 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 35/122 (28%), Gaps = 15/122 (12%)

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK---------EADEAFQSLKKGK-- 294
           I  S+   +     +K          +  ++   +K          A    +  K G   
Sbjct: 319 IAQSDTACKVYLLLSKPARDEQLTVDIRHILLSTEKCGSAEAALERAKAVLEEWKNGAAN 378

Query: 295 --KFIQLAEEQGKSLSDISLG--SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
              F +LA++     S  S G                  F  ++K   T ++   +G  +
Sbjct: 379 EASFAELAKQYSADGSASSGGLYEMVYPGEMVEEFDQWCFDESRKDGDTDIVETQYGAHV 438

Query: 351 AH 352
            +
Sbjct: 439 MY 440


>gi|254797079|ref|YP_003081917.1| hypothetical protein NRI_0706 [Neorickettsia risticii str.
           Illinois]
 gi|254590325|gb|ACT69687.1| conserved hypothetical protein [Neorickettsia risticii str.
           Illinois]
          Length = 307

 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 51/168 (30%), Gaps = 36/168 (21%)

Query: 13  VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
           + ++  VV  + F  + L      V    T   VG   +      N ++  + M+ +K  
Sbjct: 1   MFRVICVVFLLSF--FSLPSYSIEV---KTAAMVGDVIISNQDVHN-YQNLVVMLGEKSD 54

Query: 73  FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
              ++            L+ ++      Q+ + +GL     +    +             
Sbjct: 55  LSYSA-----------ALEQMIDLEVCYQYAKRVGLPFSDQKYDAALKH----------- 92

Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
                   L   GIN   ++    + L +   +   V  +    + +D
Sbjct: 93  --------LQALGINRGAHVGLLEEYLKKQVFLSEVVDQIIRPRVRID 132


>gi|297586943|ref|ZP_06945588.1| conserved hypothetical protein [Finegoldia magna ATCC 53516]
 gi|297574924|gb|EFH93643.1| conserved hypothetical protein [Finegoldia magna ATCC 53516]
          Length = 2706

 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 116/365 (31%), Gaps = 28/365 (7%)

Query: 193  DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
            D  + + + V A  + S   +     K K+  +A E          V +K  + E++  +
Sbjct: 2137 DKALEDAKKVLADPNASQDDI----NKAKEALKAAEDALNGKEAQAVDKKALQEEVAKKD 2192

Query: 253  LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
                 +K K      +    ++ +    ++A +  +  K  +  +  A++  K   D   
Sbjct: 2193 DTKASDKYKNA-DQDKKDAYDKAL----EDAKKVLEDPKATQDEVDKAKKALKDAEDA-- 2245

Query: 313  GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
                     D +   +     K    T               + K ++  + +E +K + 
Sbjct: 2246 --LDISAEVDKAALKAEVDKNKDDAITGSDKYKNA-----AQDKKDAYDKALEEAQKVLD 2298

Query: 373  NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
            N+     A  K K+  K  E+ L +  ++D+ + + ++       +  + K     +   
Sbjct: 2299 NKDATQDAVNKAKDALKAAEDALDISAAVDKAALKAEVDKNKDDAITGSDKYKNADKDKK 2358

Query: 433  IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
              Y + L       ++  +    V            K+++   +  L+ +   V K    
Sbjct: 2359 DAYDKALADAKKVLENKDATQEEVNAA---------KKALKDAEEALD-ISAAVDKAALK 2408

Query: 493  VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
             +  ++ +++A        K+ K   D        +L      + +            + 
Sbjct: 2409 AELGKKDATQATDKYKNADKDKKGAYDKALEDAQKVLDNKNATQEEVNKAKDALKAAEEA 2468

Query: 553  FSGPV 557
             +G  
Sbjct: 2469 LNGKE 2473


>gi|325105421|ref|YP_004275075.1| hypothetical protein Pedsa_2711 [Pedobacter saltans DSM 12145]
 gi|324974269|gb|ADY53253.1| hypothetical protein Pedsa_2711 [Pedobacter saltans DSM 12145]
          Length = 545

 Score = 38.8 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 112/327 (34%), Gaps = 29/327 (8%)

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIG-------LEADHGRVWGEIARSPLFHGKD 129
              +    +  +I++ LV    +    +             ++  +   I     + G  
Sbjct: 227 RSESDMNSIKSEIINFLVREEQVKARAKYQKEIEQKSQAFINNEALSRLIKYMANYWG-M 285

Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
           ++F    F   L    I+     D  TK +S    +  +        +  +    +Y + 
Sbjct: 286 HEFDKKTFSDYLQLNLISYN--FDKQTKTISVNQFIDYYNYLPLKRAIEQEADIHYYLQA 343

Query: 190 RSVD-YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
              D Y     +      +       + F   K+NY+    K I Y L++  +  + I I
Sbjct: 344 MVYDVYAYQKAKEYGLTRE-------RRFLLDKENYK----KNIIYSLYE-RQMREGINI 391

Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSL 307
           S+ EL+ +Y+  K  +       V    F N   A     +LKK G++  +L   +    
Sbjct: 392 SDKELKEKYDLGKAGFIQATEVNVSIYYFDNLSNAITGMINLKKDGREINKLLGIKNVER 451

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
             ++    ++  +   ++ + IFS+   G        +  YV+    +       +  E+
Sbjct: 452 KQLN----NQSTLFPDTVKNMIFSI-NNGSVLRPFFHNGQYVVVVKESESGQRVKNMNEM 506

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEF 394
           K+ +  ++R  K   ++      L+  
Sbjct: 507 KEVLIKEIRNEKLKYRMTAYLTDLKAL 533


>gi|218248033|ref|YP_002373404.1| hypothetical protein PCC8801_3275 [Cyanothece sp. PCC 8801]
 gi|257060643|ref|YP_003138531.1| hypothetical protein Cyan8802_2846 [Cyanothece sp. PCC 8802]
 gi|218168511|gb|ACK67248.1| conserved hypothetical protein [Cyanothece sp. PCC 8801]
 gi|256590809|gb|ACV01696.1| hypothetical protein Cyan8802_2846 [Cyanothece sp. PCC 8802]
          Length = 256

 Score = 38.4 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 16/144 (11%)

Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAE----EQGKSL 307
           +   + +NK  +   +   + Q++ P +K A E F  +++ +  F Q A     ++ + L
Sbjct: 108 VDKFFAQNKLNF---DQVVLYQIIIPYEKLAWEIFYQIEEEEMSFYQAAHLYDIDEKRKL 164

Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
                G   +  I   +LA +IF+ A+ G+    I     Y I  V     +        
Sbjct: 165 HCGYEGKLYRWEI-HPNLAAAIFA-AQPGEIISPIKIDKQYHILLVEKFISAELTP---- 218

Query: 368 KKDIANQMRITKASEKVKEDYKRL 391
             +I  ++      E +  +   L
Sbjct: 219 --EIYQEILNKMFDEWLNSELNYL 240


>gi|169833508|ref|YP_001693486.1| hypothetical protein SPH_0062 [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996010|gb|ACA36622.1| PblB [Streptococcus pneumoniae Hungary19A-6]
          Length = 3038

 Score = 38.4 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 78/250 (31%), Gaps = 20/250 (8%)

Query: 367 VKKDIAN--QMRITKASEKVKEDYKRLEEFL--ALGTSMDEISRREKIVSIDLPLVDFAG 422
           ++++I++  ++   KA E  +E    + +         + E  R+ +    +        
Sbjct: 378 LRQEISDGIELAKAKAEEVKQELSDTINQRFNSFDNGPLKEAKRKAEEALRNAGASSSLA 437

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
           ++ K   + ++   E    +       LS D              + +  P + +   E+
Sbjct: 438 QESKRIGLDSVARLEAFKSQTTSAQTALSGDLDALKRT------IVNDIRPKQAQVEAEI 491

Query: 483 LTDVKKDWKTVK----TAEEVSSKANQL------VLEYSKEGKNFRDIGKNLGASLLTTN 532
              V+   +T K     +  ++ +A ++       LE  K          +    +L   
Sbjct: 492 AKQVEALVQTKKELSGASTLLAQEAKRIELDSVARLEAFKSQTTSAQTALSGDLDVLKRT 551

Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
             N +  +      +   QV +      +       L+    ++    V  ++      +
Sbjct: 552 IANDIRPKQAQAEAEIAKQVEALSRTKNELSGASTLLAQEAKRIELDSVARLEAFKSQTT 611

Query: 593 YLTQMMNKDL 602
                ++ DL
Sbjct: 612 SAQTALSGDL 621


>gi|261496939|ref|ZP_05993307.1| autotransporter adhesin [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307463|gb|EEY08798.1| autotransporter adhesin [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 1026

 Score = 38.4 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 54/186 (29%), Gaps = 31/186 (16%)

Query: 358 PSFTVSFQEVKKDI-------ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
            +     +E++  I         ++     ++ + +  +          ++ E       
Sbjct: 588 ANKERELEELENQINAFTLTDEEKLAEDVKNDLISKLDEAKAALAKNQQTLKEKHDELLG 647

Query: 411 VSIDLPLVDF--AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
           ++  L        GK+   +   A    E  +   FG D   + ++ +AL   S      
Sbjct: 648 LNNKLDSSPLVKNGKNALAEGTNAFASGENAI--AFGTDSQATGNNAIALGANS------ 699

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
                           + +      K A+ +  KA  L       G +   IG N+G S 
Sbjct: 700 --------------KANAESAIAIGKGAQALKEKALALGENAIANGASAIAIGDNIGVSG 745

Query: 529 LTTNQI 534
                I
Sbjct: 746 EKAVGI 751


>gi|45383784|ref|NP_989497.1| laminin subunit beta-2 [Gallus gallus]
 gi|2708707|gb|AAB92586.1| laminin beta 2-like chain [Gallus gallus]
          Length = 1792

 Score = 38.4 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 78/266 (29%), Gaps = 32/266 (12%)

Query: 377  ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
               A ++ +   + L         +       K  + +  L   A  D   +  A + + 
Sbjct: 1443 ADSALDRARHAQEELRRAAGEVAQLSHRVAEAKGKADEARLQAQAALDKANQTRARVEHS 1502

Query: 437  EQLLFR------VFGKDDPLSKDHT---------VALPDGSYMWVQIKESIPARDRKLEE 481
             + L         F   +    +           ++LP       ++ E I AR   L  
Sbjct: 1503 NKELRELISHVKAFLSQEGADPESIEVVASRVLELSLPASPAQIHRLAEEIKARVPSLAS 1562

Query: 482  VLT-------DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL----T 530
            V         DV++  + ++ A+   ++A  +        +   +  +  GA+      T
Sbjct: 1563 VDAILEQTAGDVRRAGQLLQDAQRAKARAEGVRGTAEAVQQALEEARQAQGAAGQALHST 1622

Query: 531  TNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
               I   ++          G+ Q  +  +E +     +        KV  +       + 
Sbjct: 1623 AADIQHSEHTIGTMRAQTLGVEQQLASAMERLGLLEGQTDA----LKVKRANNSLAATRA 1678

Query: 589  KFISYLTQMMNKDLLDSVIAYLKSQY 614
               + + +    +    +   LK +Y
Sbjct: 1679 HDAAGIARDRASEAKQVLEGPLKDRY 1704


>gi|119187757|ref|XP_001244485.1| hypothetical protein CIMG_03926 [Coccidioides immitis RS]
          Length = 107

 Score = 38.4 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
           V  ++     + +EA   L+ G KF ++A E  + 
Sbjct: 35  VRHILCEKHSKKEEALAKLRAGAKFDEVAREFSED 69


>gi|323439588|gb|EGA97308.1| cell wall surface anchor family protein [Staphylococcus aureus O11]
          Length = 2154

 Score = 38.4 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 94/285 (32%), Gaps = 28/285 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1111 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1170

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1171 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1230

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1231 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1283

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1284 QAFNQINQNQTNDQVDATTNQ-------AVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1336

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                +   D      +Q + K+   ++ A  ++Q +  V+     
Sbjct: 1337 IDNSLDSTDNEKEVASQALTKEKEKALAAIDQAQTNSQVNQAATN 1381


>gi|126180098|ref|YP_001048063.1| hypothetical protein Memar_2158 [Methanoculleus marisnigri JR1]
 gi|125862892|gb|ABN58081.1| protein of unknown function DUF111 [Methanoculleus marisnigri JR1]
          Length = 397

 Score = 38.4 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 61/180 (33%), Gaps = 10/180 (5%)

Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
           P    AG  + G  +  +   E L+         + +     +       VQ++   P  
Sbjct: 8   PFNGAAGDMIIGT-LLDLGADEGLVRAAMRS--VVGEPTIERVDRSGIRAVQVRAHAPVH 64

Query: 476 DRKLEEVLTDVKKD---WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS--LLT 530
            R L+EVL  V +        + A  V  + ++       EG +F ++G +   +  +  
Sbjct: 65  HRSLDEVLDRVAESDAPAPAQEMARRVFLRIHRAEESIHGEGAHFHEVGADDAIADVVGA 124

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
              ++ +  +        + + F+  V     FP+    +  +   ++       E+ + 
Sbjct: 125 CTALHSLAPDGVAVHPLALGRGFA--VGAHGTFPVPAPATVAILAESDLTTVSGDEEREL 182


>gi|170593755|ref|XP_001901629.1| Myosin tail family protein [Brugia malayi]
 gi|158590573|gb|EDP29188.1| Myosin tail family protein [Brugia malayi]
          Length = 1985

 Score = 38.4 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 95/248 (38%), Gaps = 21/248 (8%)

Query: 385  KEDYKRLEEFLALGTSMDEISR-REKIVSIDLPLVDFAGKDVK-GKEVAAIPYKEQLLFR 442
             + Y R++  L  G  ++E+ +  +KI  ++  L+   G   +   +VA + +++  LF 
Sbjct: 857  FKLYGRVKPMLKAGKELEEMDKLSDKIKGLEEKLLREEGNRRELEAQVADLTHEKDQLFA 916

Query: 443  VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
               K+   S +    +        ++ E     +R+LEE+   V +     +T      K
Sbjct: 917  NLEKEKSHSAEAEGRIQ-------KLNEIKADMERQLEELNDRVAEMEDRNETLNRAKKK 969

Query: 503  ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
            + Q V +  ++ +      +   +   +  Q  R+         + +++V        K 
Sbjct: 970  SEQEVSDLKRKNQELEMALRKAESEKQSREQNIRLLQGEMASQDEAVARV-------NKE 1022

Query: 563  FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
               +  ++  + +    +   V   ++  + + Q      LD +   L+ +  + +    
Sbjct: 1023 KKQQEEMNRKLMEDLQVEEDKVNHMERLKTKIEQQ-----LDDMEEKLEREKRMRLDLEK 1077

Query: 623  IQRYLDGE 630
             +R ++GE
Sbjct: 1078 AKRKVEGE 1085


>gi|17228858|ref|NP_485406.1| hypothetical protein all1363 [Nostoc sp. PCC 7120]
 gi|17130710|dbj|BAB73320.1| all1363 [Nostoc sp. PCC 7120]
          Length = 242

 Score = 38.4 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 7/127 (5%)

Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSLSD 309
            +L++ + + K K    +      L   +   A E +  L  K + F ++A++  +    
Sbjct: 103 AKLESYFFQLKAKL---DKVIYSLLRTQDPGLAQELYFRLQAKEQSFAEVAQKYSQGPES 159

Query: 310 ISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
            + G     E          + S  + G  +P    +  YVI  V    P+     + +K
Sbjct: 160 QTGGLVGPVEQSSLHPAMVQLLSSCQPGQISPPTRITEWYVIVRVEKFIPAQLD--EPMK 217

Query: 369 KDIANQM 375
             + N++
Sbjct: 218 ARLLNEL 224


>gi|325295071|ref|YP_004281585.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065519|gb|ADY73526.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 182

 Score = 38.4 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 33  ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92
           +L +      +  V  + +  S      K      +             +     ++L++
Sbjct: 15  SLTAQGSDKILAKVNGKPITESQLEEVLKGLPAKYN---------SVKNNPQFQSQVLNS 65

Query: 93  LVSGATLDQFIEDIGLEADHGRVWGEIAR 121
           L++   L Q  +  G+E  + +V  +I  
Sbjct: 66  LINQELLYQEAKKEGIEK-NAKVQRQIKE 93


>gi|284097541|ref|ZP_06385612.1| secreted protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283830948|gb|EFC34987.1| secreted protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 178

 Score = 38.4 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 38/132 (28%), Gaps = 14/132 (10%)

Query: 31  SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
            +        S +  V    +  S   +  +       +       +E+       +  L
Sbjct: 15  GNVYAQTLIDSIIAVVNEDAITRSELEDELRIATVFRIRTAPISTTAEQ-------RTGL 67

Query: 91  DNLVSGATLDQFIEDIGLEADHG--RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
           + +++   + Q  E +G+       +V  +IA            S  VF + L    + +
Sbjct: 68  NTIINRKFVLQEAERLGIIVTERNTQVAAKIAEISA-----KYASETVFQNVLQEAQLEK 122

Query: 149 KEYIDHYTKMLS 160
           +         L 
Sbjct: 123 EAVEAQVYDQLI 134


>gi|331701044|ref|YP_004398003.1| oligoendopeptidase F [Lactobacillus buchneri NRRL B-30929]
 gi|329128387|gb|AEB72940.1| oligoendopeptidase F [Lactobacillus buchneri NRRL B-30929]
          Length = 603

 Score = 38.4 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 52/142 (36%), Gaps = 14/142 (9%)

Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-LLDQAKRFYFENRSVDYIVLNNRHVPAI 205
            ++E+   Y  + +         G +  S   LL   +R    +R ++ + +    +   
Sbjct: 27  TDQEFETDYEAVQTGAKQFAELAGTIEKSAAALLTATERLMTLSRKLEKVYV-YAQLKND 85

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE--- 262
            D S        +KY+  Y   E     +       + + +++S+D+++  Y+   +   
Sbjct: 86  QDTSE-------DKYQAMYSRAESLGAQFGAATAWFEPELLKVSDDQIKQFYQDQPKLAD 138

Query: 263 --KYFSPEIRTVEQLVFPNQKE 282
             ++F    +    ++  + + 
Sbjct: 139 YRRFFDQTFKRRNHILSNDVEA 160


>gi|226199062|ref|ZP_03794624.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pakistan 9]
 gi|225928837|gb|EEH24862.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pakistan 9]
          Length = 71

 Score = 38.4 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           + I ++ K G F+  I GS GY + +V + +     S  ++++ +    R+ K    + E
Sbjct: 4   NEIDAIVKSG-FSMPIRGSNGYHLLYVRDKRDIVAPSLDQIREQLIELARVDKFERHLCE 62

Query: 387 DYKRL 391
               +
Sbjct: 63  LRGAV 67


>gi|152985692|ref|YP_001346776.1| hypothetical protein PSPA7_1392 [Pseudomonas aeruginosa PA7]
 gi|150960850|gb|ABR82875.1| hypothetical protein PSPA7_1392 [Pseudomonas aeruginosa PA7]
          Length = 1733

 Score = 38.4 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 69/250 (27%), Gaps = 15/250 (6%)

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRV 115
             + +  L  +    G    +E    +G     L+ +     LD     +  L  D    
Sbjct: 592 EQALQPLLERLQALDGEAQKAETVAQLGEPLAALEAMAGD--LDMLSSLMASLRIDDATQ 649

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY--TKMLSRTDVVGMFVGGMR 173
              I           + +     +   R+G+   E +  +     L    +        +
Sbjct: 650 RTRI--IESISEIYARLNQAKARAEQRRKGLGSSETVAQFGARFKLFGQGITNALAQ-AQ 706

Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
                 +Q  R   +   ++    ++             L + FE +K        ++  
Sbjct: 707 DPERCDEQLSRLLVQLEELESQFGDHEQFLGDILAKREELLETFEAHKQTLLDERQRKAQ 766

Query: 234 YILFDVHEKEKKIE------ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
            +L         ++         DEL A +  +       E+    + +  +  +AD+  
Sbjct: 767 GLLDAARRILDSLQRRTARFTEADELNAFFAADPLILKLRELAERLREL-KDSVKADDVE 825

Query: 288 QSLKKGKKFI 297
             LK  +   
Sbjct: 826 ARLKAARDQA 835


>gi|297580101|ref|ZP_06942028.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297535747|gb|EFH74581.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 658

 Score = 38.4 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 85/248 (34%), Gaps = 27/248 (10%)

Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
           V+ I    + + ++V  ++A Q++         E  + L++ ++       + + E  ++
Sbjct: 149 VNGILGETSQNIRQVIDELAEQLKQ-------SELIQLLQQEISAKAPQTLLEQLESELT 201

Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
               LV    + +K           QL      +D+  +  +   L       + +    
Sbjct: 202 ASGELVAQIQRQLKSATETFAAQVTQLHASSLARDEAQAALNEAKL-------LDVSRVF 254

Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG----KNFRDIGKNLGASL 528
              D+ L E +  V+      K A + +++A   +   +++G    K         G   
Sbjct: 255 ANADQALAERVNTVETTAGNAKAAAQTNAQA---IATINQDGSVAFKAMWGAKAQAGEIS 311

Query: 529 LTTNQINRMDNENKFFGYDGISQVF----SGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
                I + D  ++       SQ F    + P  +V  F I+NG   +   +       +
Sbjct: 312 AGIGLIAKSDGTSQVAVSA--SQFFVYDPNKPGTLVPTFAIDNGAVVIPKAIIEKATIQI 369

Query: 585 QEKDKFIS 592
            +    ++
Sbjct: 370 LQAQTIVA 377


>gi|167628596|ref|YP_001679095.1| trigger factor [Heliobacterium modesticaldum Ice1]
 gi|167591336|gb|ABZ83084.1| trigger factor [Heliobacterium modesticaldum Ice1]
          Length = 461

 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 14/151 (9%)

Query: 152 IDHYTKMLSRTDVVGMFVGGMRP--SNLLLDQAKRFYFEN--RSVDYIVLNNRHVPAIAD 207
            +   +   R  VV   VG  +     +++D       E     + Y  ++     A+  
Sbjct: 309 AEKAREQAKRNAVVEKVVGASQVDIPMVMIDSRVDQMLEEYGHRLRYQGISMEQFLAMTK 368

Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRI--SYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
            +   L   F         PE +++    ++ +   K + + +S++EL  E E+    Y 
Sbjct: 369 QTQKDLKAQF--------IPEAEKVVKEELVLEAVAKAEGMSVSDEELNKEIEEMAANYR 420

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
            P  +  + L    Q +A      LKK  KF
Sbjct: 421 KPADQIRKILESRGQIDALTEGILLKKAAKF 451


>gi|239927556|ref|ZP_04684509.1| hypothetical protein SghaA1_04984 [Streptomyces ghanaensis ATCC
           14672]
 gi|291435900|ref|ZP_06575290.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291338795|gb|EFE65751.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 1629

 Score = 38.4 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 36/322 (11%), Positives = 103/322 (31%), Gaps = 21/322 (6%)

Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
           ++   +       Q+    +  AD    + +  ++  Q  ++  + L+D    +  ++  
Sbjct: 400 QQSLAAAHRNAARQIRQAEEGVADAVRNAAEASERAAQQVKQAKRGLADAVQQAADRQRS 459

Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITK 379
               +  +  SLA                   ++  +       ++++  +AN  +    
Sbjct: 460 AAEQVRSAEESLADAQRTARQAQQD-------LTQARADAARQLEDLESRLANASLSERD 512

Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
           A   V+E + RL      G S   + ++   ++ D  +   A +  + K ++A   K   
Sbjct: 513 AVLAVQEAHTRLIRMREAGESASYVEQQRAQLAYDQAVQRLADQRAETKRLSAEKKKADK 572

Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
              V G D  L     +   +                ++L +   D     + V++  ++
Sbjct: 573 A-GVEGSDLVLDAQERLRQAEQGV---------AKGQQQLAKARED--AARQAVQSQRDI 620

Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV-FSGPVE 558
           +    ++        +   D  +++  +     Q  +   ++       I+    S    
Sbjct: 621 AEAQQRVAEAQRNVTRTQEDGARSVARAQEQLAQAQQSAADSIASAQRQIASASLSAAGG 680

Query: 559 MVKCFPIENGLSYVVFKVTNSK 580
           + +    +      + K+T + 
Sbjct: 681 VDQAALAQQKYQAELAKLTPAA 702


>gi|331091987|ref|ZP_08340819.1| hypothetical protein HMPREF9477_01462 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402886|gb|EGG82453.1| hypothetical protein HMPREF9477_01462 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 684

 Score = 38.4 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 60/169 (35%), Gaps = 26/169 (15%)

Query: 197 LNNRHVPAIADPSNAVLTQ--WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
           ++ + +    + +  ++ +   ++     Y     + +   + +      + +++ ++L 
Sbjct: 475 VDVKEIEIKLEETKELIQKAKEYDD-TSVYTDESVETLRKAIEEAENIAAQSDVTVEQLN 533

Query: 255 AEYEK-------NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-------GKKFIQLA 300
              E         +++   PE   + + +   +KEA E  +  KK        +  +Q  
Sbjct: 534 KAIENLNTAITNMEKRKEEPEKPDISEAIIAKKKEAKELLEKAKKYDNVFVYTEDSVQAL 593

Query: 301 E------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
                  E   +  D++L    K      SL D++  + KKG+      
Sbjct: 594 RSAMKNMENVLNQEDVTLDRLEKAI---DSLNDAVLGMKKKGEVEKPEK 639


>gi|284040224|ref|YP_003390154.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283819517|gb|ADB41355.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 651

 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 50/166 (30%), Gaps = 3/166 (1%)

Query: 464 MWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
              ++ +++    R LE  EV     +  +  +  + + + A +      K       + 
Sbjct: 39  FAYKVTDALQEVVRALERQEVYYQTNQRVRAREQQDRLMAIAKKEGRVVPKASGEHVAVH 98

Query: 522 KNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
                       ++  D     +G   G++   +  V+     PI   LS     V    
Sbjct: 99  SEATPRAKAKRPLSSTDQLAARYGLPPGMTAAGTMVVQSDVLHPIVRPLSAEQMVVVEEF 158

Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
                E      +  Q+  +   D  +  + +     +++ +  + 
Sbjct: 159 FRQQDELMAVGDWQAQLAQQHQFDQWVENVLNSELTRINNQIGHQA 204


>gi|296387764|ref|ZP_06877239.1| hypothetical protein PaerPAb_06409 [Pseudomonas aeruginosa PAb1]
          Length = 1733

 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 67/248 (27%), Gaps = 11/248 (4%)

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRV 115
             + +  L  +    G    +E    +G     L+ +     LD     +  L  D    
Sbjct: 592 EQALQPLLERLQSLDGEAQKAETVAQLGEPLAALEAMAGD--LDMLSSLMASLRIDDATQ 649

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR-TDVVGMFVGGMRP 174
              I           + +     +   R+G+   E +  +          +   +   + 
Sbjct: 650 RTRI--IESISEIYARLNQAKARAEQRRKGLGSSETVAQFGAQFKLFGQGITNALAQAQD 707

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
                +Q  R   +   ++    ++             L + FE +K        ++   
Sbjct: 708 PERCDEQLSRLLVQLEELESQFGDHEQFLGDILAKREELLETFEAHKQTLLDERQRKAQG 767

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-----FPNQKEADEAFQS 289
           +L         ++  +       E N      P I  + +L        +  +AD+    
Sbjct: 768 LLDAARRILDSLQRRSARFTQAEELNAFFAADPLILKLRELAERLRELKDSVKADDVEAR 827

Query: 290 LKKGKKFI 297
           LK  +   
Sbjct: 828 LKAARDQA 835


>gi|325263532|ref|ZP_08130266.1| putative swarming motility protein SwrC [Clostridium sp. D5]
 gi|324031241|gb|EGB92522.1| putative swarming motility protein SwrC [Clostridium sp. D5]
          Length = 1275

 Score = 38.0 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 83/227 (36%), Gaps = 17/227 (7%)

Query: 352 HVSNIKPSFTVSFQEVKKDI---ANQMRITKAS-EKVKEDYKRLEEFLALGT-SMDEISR 406
            +S I+ +   + ++    I      +   K   E++    +++E        ++ E   
Sbjct: 263 KLSEIQVAEA-ALEQAMAQIDASEQALMQQKQELEELNNQREQIEAQYQQVMQAIAESGE 321

Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
             +++     L        +  E  ++   EQ L +     + +++     L +G  M +
Sbjct: 322 TPELLIAKGTLTAQLAVLERYDE--SMAAIEQGLAQAVQSRETITQKQA-ELAEGKAMLI 378

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
           Q++E + A    L +    +      ++ A ++S  + QL +  ++  K+     K    
Sbjct: 379 QVQEQLNAGTITLAQARAQLSTA--QLEAAMQMSQASAQLAVGEAEL-KSKEAEIKTAKE 435

Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
              +   +  M    +       +Q F+ P      +  E+G+ Y++
Sbjct: 436 EAKSAANVKSMLT-AETIQTVLAAQNFNMPAG----YVNEDGIDYLI 477


>gi|111225580|ref|YP_716374.1| hypothetical protein FRAAL6236 [Frankia alni ACN14a]
 gi|111153112|emb|CAJ64859.1| hypothetical protein FRAAL6236 [Frankia alni ACN14a]
          Length = 247

 Score = 38.0 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/146 (9%), Positives = 35/146 (23%), Gaps = 8/146 (5%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMIS----QKIGFVVNSERARSVGLDKKILDNLVS 95
           +     VG Q +  +      ++ L        Q+              L  + L  LV 
Sbjct: 14  AGDAARVGSQSIETAQVRGIVERGLAAARTVPVQQQPGQTAPPALDPAKLAVRALSTLVQ 73

Query: 96  GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
              L        +      +        +        S   F  + A  G  +++     
Sbjct: 74  LDVLSDEARRRNITVRPQDLASYYRAYAILQYG----SVQAFERQAASVGFAQRDVSMIV 129

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQ 181
                ++ +       +  ++    +
Sbjct: 130 RAGALQSALSDRISPHLLATDAETRE 155


>gi|113477011|ref|YP_723072.1| hypothetical protein Tery_3509 [Trichodesmium erythraeum IMS101]
 gi|110168059|gb|ABG52599.1| hypothetical protein Tery_3509 [Trichodesmium erythraeum IMS101]
          Length = 618

 Score = 38.0 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 104/353 (29%), Gaps = 27/353 (7%)

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
           N++    +  +   L + +E+Y+++Y              V +     ++  ++L     
Sbjct: 282 NKNYNIHSKSNPDELKKMWEQYQNDYEN------RLEKVKVKDSLDAEKVKTNDLYLSNL 335

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
             + +            +   + EADE  + +  G    +   E  ++  +IS G+ ++E
Sbjct: 336 DKETEADETTEEISAGALTEEKTEADETTEEISAGA-LTEEKTEADETTEEISAGALTEE 394

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
                   + I + A   + T                I             +   ++   
Sbjct: 395 NTEADETTEEISAGALTEENTEADET--------TEEISAGALTEENTEADETTEEISAG 446

Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
             +E+  E  +  EE  A        +  E+    D    + +   +  ++  A    E+
Sbjct: 447 ALTEENTEADETTEEISAG-------ALTEEKTEADETTEEISAGALTEEKTEADETTEE 499

Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
           +      ++   + + T  +  G+     + E     D   EE+      + KT      
Sbjct: 500 ISAGALTEEKTEADETTEEISAGA-----LTEEKTEADETTEEISAGALTEEKTEADETT 554

Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
               A  L  E ++  +   +I         T       +        +    
Sbjct: 555 EEISAGALTEEKTEADETTEEISAGALTEEKTEADETTEEISAGALTEEKTEA 607


>gi|298695024|gb|ADI98246.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus ED133]
          Length = 2185

 Score = 38.0 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1142 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1201

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1202 QINQHYNTKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1261

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1262 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1314

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1315 QAFNQINQNQTNDQVDATTNQ-------AVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1367

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1368 IDNSLDSTDNEKEVASQALTKEKEKALAAIDQAQTNSQVNQAA 1410


>gi|297157982|gb|ADI07694.1| lipoprotein [Streptomyces bingchenggensis BCW-1]
          Length = 246

 Score = 38.0 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER-ARSVGLDKKILDNLVSGATLD 100
               V   ++  S               + G   + +  A S  L +  L  ++    ++
Sbjct: 51  AAAVVDGSRITVSQLQARVNDVRD---AQRGSAKSEQLVANSGQLSQNTLIRMIQFRVIE 107

Query: 101 QFIEDIGLEADHGRVWG 117
           +  +D G+      V  
Sbjct: 108 RAGKDNGVRVTRRDVQQ 124


>gi|152985826|ref|YP_001350854.1| 2,4-dienoyl-CoA reductase FadH2 [Pseudomonas aeruginosa PA7]
 gi|150960984|gb|ABR83009.1| 2,4-dienoyl-CoA reductase FadH2 [Pseudomonas aeruginosa PA7]
          Length = 681

 Score = 38.0 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 5/118 (4%)

Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS-FQEVKKDIANQMRITKASEKVKED 387
             +L + G    +++   G+  + V  I  S   + F EV   + +++++   +      
Sbjct: 245 ALALEEAGIT--LLNTGIGWHESRVPTIVTSVPRAAFAEVSARLRHELKVPVIASNRINT 302

Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
            +  E  LA G    ++    + +  D   V  AG    G+    I   +  L   F 
Sbjct: 303 PEVAEALLAEGK--ADLVSMARPLLADPQFVAKAGAGRAGEINTCIACNQACLDHAFA 358


>gi|261319793|ref|ZP_05958990.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti M644/93/1]
 gi|261292483|gb|EEX95979.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti M644/93/1]
          Length = 82

 Score = 38.0 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 335 KGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
            G+ T   I   FGY I  +        + F  V   IA
Sbjct: 6   PGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 44


>gi|46199226|ref|YP_004893.1| hypothetical protein TTC0922 [Thermus thermophilus HB27]
 gi|46196851|gb|AAS81266.1| hypothetical protein TT_C0922 [Thermus thermophilus HB27]
          Length = 966

 Score = 38.0 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 63/185 (34%), Gaps = 11/185 (5%)

Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
               +       V++ ++      +A    ++  K+     A   +++E   R + +   
Sbjct: 252 EALKARAEEMARVEERLSRAEEAERALPLWRDYQKKRAALQATEKALEEAEGRLRALEAR 311

Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
              + F+ + ++  + A    ++           P  K    + PD +    +++E    
Sbjct: 312 REALGFSPEALERAQAAYAEAQDLKALEALLARAPAGK-APASGPDPATAQARLEEV--- 367

Query: 475 RDRKLEEVLTDV------KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
             + LE +  ++       + W+ ++  E   ++  + +     EGK  R+    L   L
Sbjct: 368 -LKALEALGAELLRLRAWAEAWEALRAKEAALAEVGEALARLEAEGKEAREARDALALRL 426

Query: 529 LTTNQ 533
                
Sbjct: 427 KEAEA 431


>gi|313109134|ref|ZP_07795105.1| hypothetical protein PA39016_001680022 [Pseudomonas aeruginosa
           39016]
 gi|310881607|gb|EFQ40201.1| hypothetical protein PA39016_001680022 [Pseudomonas aeruginosa
           39016]
          Length = 1733

 Score = 38.0 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 69/249 (27%), Gaps = 13/249 (5%)

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRV 115
             + +  L  +    G    +E    +G     L+ +     LD     +  L  D    
Sbjct: 592 EQALQPLLERLQSLDGEAQKAETVAQLGEPLAALEAMAGD--LDMLSSLMASLRIDDATQ 649

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR-TDVVGMFVGGMRP 174
              I           + +     +   R+G+   E +  +          +   +   + 
Sbjct: 650 RTRI--IESISEIYARLNQAKARAEQRRKGLGSSETVAQFGAQFKLFGQGITNALAQAQD 707

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
                +Q  R   +   ++    ++             L + FE +K        ++   
Sbjct: 708 PERCDEQLSRLLVQLEELESQFGDHEQFLGDILAKREELLETFEAHKQTLLDERQRKAQG 767

Query: 235 ILFDVHEKEKKIE------ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           +L         ++         +EL A +  +       E+    + +  +  +AD+   
Sbjct: 768 LLDAARRILDSLQRRTARFTQAEELNAFFAADPLILKLRELAERLREL-KDSVKADDVEA 826

Query: 289 SLKKGKKFI 297
            LK  +   
Sbjct: 827 RLKAARDQA 835


>gi|118371422|ref|XP_001018910.1| hypothetical protein TTHERM_00581690 [Tetrahymena thermophila]
 gi|89300677|gb|EAR98665.1| hypothetical protein TTHERM_00581690 [Tetrahymena thermophila
           SB210]
          Length = 826

 Score = 38.0 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 53/159 (33%), Gaps = 13/159 (8%)

Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMF----VGGMRPSNLLLD------QAKRFYFE 188
             L    ++ K +     + L +  +           +    + LD      Q       
Sbjct: 420 QTLFDNNMSGKSFQTILIRPLYKEQIANSIKVKNNASLFQELIDLDLYKIQAQFIYLSTT 479

Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
             + +Y+++               L ++ +  K  +++ EY  I +   +   + + I+ 
Sbjct: 480 FATFNYLIITQCDYLDNLSSKRDALKEFRKDLKIYHQSEEYDMIDFEQLNPSFQNEPIQQ 539

Query: 249 SNDELQ---AEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
             DEL+   +  +++ +       +    L+ P   +A+
Sbjct: 540 KEDELRFLNSYNDQSIDSQNDDIQKQNSDLIEPQNFQAN 578


>gi|322491746|emb|CBZ27019.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 438

 Score = 38.0 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 294 KKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
           ++F+   +E            LG   K    D  + ++ F L ++G+ +  +    G  +
Sbjct: 376 EEFVAAVDEYCEVSAKKKRGDLGVVEKGTFAD-EIDEAAFRL-RRGEVSAPVETQLGVHL 433

Query: 351 AH 352
            +
Sbjct: 434 LY 435


>gi|255322964|ref|ZP_05364100.1| ferric receptor CfrA [Campylobacter showae RM3277]
 gi|255299826|gb|EET79107.1| ferric receptor CfrA [Campylobacter showae RM3277]
          Length = 278

 Score = 38.0 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 65/201 (32%), Gaps = 30/201 (14%)

Query: 15  KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
           KI     F+ F +   S        +   V +  + +  +    +               
Sbjct: 4   KISFAAFFLSFCMANASQI-----SNGIAVIIENEPITVNEVRKA--------------- 43

Query: 75  VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
                A+    +   L+ L+        I+++ +EA    +   + +       ++  S 
Sbjct: 44  ----AAQLQTSEANALNLLIRDRLETAQIKNLKIEASDYELNQRLQKIAS----ESGMSA 95

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
               S +  +G +  ++ D   K + +  +        +  N+  + A+ ++ +NR + +
Sbjct: 96  SDLRSAVLSKGGDYAQFKDDVAKTIKQEKLYQSIFAEAKI-NISENAARAYFEQNRDL-F 153

Query: 195 IVLNNRHVPAIADPSNAVLTQ 215
               +  V     PS  +L  
Sbjct: 154 AHFTDVSVTRYVAPSMQLLEA 174



 Score = 37.7 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 12/149 (8%)

Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           E KI IS +  +A +E+N++ +      +V + V P+ +  + A                
Sbjct: 132 EAKINISENAARAYFEQNRDLFAHFTDVSVTRYVAPSMQLLEAARH------------SS 179

Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
              +   + +     +         +IF     G FT +     G+ + +V++ K     
Sbjct: 180 PMNTNHSVHMDVLDLKSEQIPPQLRTIFQQTADGTFTQIFQTPQGFEMFYVASKKGQTMP 239

Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRL 391
            F EV+ +  N +   +    + E + +L
Sbjct: 240 EFDEVRDEAMNALYKLEQDRVIGEYFNKL 268


>gi|93211089|gb|ABF00987.1| mushroom body defect protein [Drosophila melanogaster]
          Length = 2501

 Score = 38.0 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 67/191 (35%), Gaps = 21/191 (10%)

Query: 359  SFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
            +   S  E +  +++ ++  K  A + V      L++       +  +   +  +S DL 
Sbjct: 1282 AKVTSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQ 1341

Query: 417  LVDFAGKDVKGKEVAAIPYKEQLLFRV---------FGKDDPLSKDHTVALPDGSYMWVQ 467
                + + +       +  + + L +V            D    K+    L D   + V+
Sbjct: 1342 RQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDN--LKVE 1399

Query: 468  IKESIPARDRKLEEVLTDVKKDWK----TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
            + +      ++L +V + ++   K      +  E      + L +E  KE K    +   
Sbjct: 1400 LDKER----KELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSA 1455

Query: 524  LGASLLTTNQI 534
            +GA    ++ +
Sbjct: 1456 IGAQTKLSDDL 1466



 Score = 37.7 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 57/473 (12%), Positives = 150/473 (31%), Gaps = 70/473 (14%)

Query: 162  TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN---AVLTQWFE 218
            + +    +   +  +L     +      R++   +   + +      S+   A + + +E
Sbjct: 1022 SKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYE 1081

Query: 219  KYKDNYRAP---EYKRISYILFDVHEKEKKIEISNDE----LQAEYEKNKEKYFSPEIRT 271
            +     +A    E K+  ++  + ++   +++    E    +  + E+ + K    +   
Sbjct: 1082 EQIKALQAKCDMEAKKNEHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLV 1141

Query: 272  VEQLVFPNQ-----KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
              Q +  +           A+++  K    +Q  +E G+ L D       KE      + 
Sbjct: 1142 DSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVN 1201

Query: 327  DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
             +I +  K  D       S   ++ ++            +VK  I  Q +++   ++ KE
Sbjct: 1202 SAIGAQTKLSDDLECQKESGQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKE 1261

Query: 387  DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
               +L + L +     E+ +  K ++    +++   K                       
Sbjct: 1262 SALQLVDNLKV-----ELDKERKELAKVTSVIEAQTK--------------------LSD 1296

Query: 447  DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK----TVKTAEEVSSK 502
            D    K+    L D   + V++ +      ++L +V + ++   K      +  E     
Sbjct: 1297 DLQREKESAQQLVDN--LKVELDKER----KELAQVKSVIEAQTKLSDDLQRQKESAQQL 1350

Query: 503  ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
             + L +E  KE K    +     A    ++ + R     +    +   ++          
Sbjct: 1351 VDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVEL---------- 1400

Query: 563  FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
                +     + +V +      +  D           K+    ++  LK +  
Sbjct: 1401 ----DKERKELAQVKSVIEAQTKLSDDLQRQ------KESAQQLVDNLKMELD 1443


>gi|158336319|ref|YP_001517493.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Acaryochloris marina MBIC11017]
 gi|158306560|gb|ABW28177.1| PpiC-type peptidyl-prolyl cis-trans isomerase domain containing
           protein [Acaryochloris marina MBIC11017]
          Length = 250

 Score = 38.0 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 70/186 (37%), Gaps = 16/186 (8%)

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           YR    +  +     +   + K++  N+++++++ + K ++   +      +   + + A
Sbjct: 76  YRMTPQQLAAQAQRQMKLYKFKLQTWNNQVESDFLQQKGQF---DQYVYSLIRVASAEVA 132

Query: 284 DEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYIPDV-SLADSIFSLAKKGDFTPV 341
            E +  L+ G++ F  LA +  +     + G        ++      I + A+ G   P 
Sbjct: 133 QELYFRLQAGEQAFADLATKYSQGPEAQTGGLIGPVTAANLHPTLVQILTSAQPGQVRPP 192

Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK-RLEEFLALGTS 400
           I     +VI  +  +          +   +   +R     ++  E  + +L+  +    S
Sbjct: 193 IRLGEWFVIVSLQKL----------ISAQLDAPLRQQLLEQRFNEWLQLQLQSVVVSDDS 242

Query: 401 MDEISR 406
           +   ++
Sbjct: 243 IAVSAQ 248


>gi|116051725|ref|YP_789436.1| hypothetical protein PA14_16190 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586946|gb|ABJ12961.1| hypothetical protein PA14_16190 [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1746

 Score = 38.0 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 69/249 (27%), Gaps = 13/249 (5%)

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRV 115
             + +  L  +    G    +E    +G     L+ +     LD     +  L  D    
Sbjct: 605 EQALQPLLERLQSLDGEAQKAETVAQLGEPLAALEAMAGD--LDMLSSLMASLRIDDATQ 662

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR-TDVVGMFVGGMRP 174
              I           + +     +   R+G+   E +  +          +   +   + 
Sbjct: 663 RTRI--IESISEIYARLNQAKARAEQRRKGLGSSETVAQFGAQFKLFGQGITNALAQAQD 720

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
                +Q  R   +   ++    ++             L + FE +K        ++   
Sbjct: 721 PERCDEQLSRLLVQLEELESQFGDHEQFLGDILAKREELLETFEAHKQTLLDERQRKAQG 780

Query: 235 ILFDVHEKEKKIE------ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           +L         ++         +EL A +  +       E+    + +  +  +AD+   
Sbjct: 781 LLDAARRILDSLQRRTARFTQAEELNAFFAADPLILKLRELAERLREL-KDSVKADDVEA 839

Query: 289 SLKKGKKFI 297
            LK  +   
Sbjct: 840 RLKAARDQA 848


>gi|15598923|ref|NP_252417.1| hypothetical protein PA3728 [Pseudomonas aeruginosa PAO1]
 gi|9949894|gb|AAG07115.1|AE004791_12 hypothetical protein PA3728 [Pseudomonas aeruginosa PAO1]
          Length = 1746

 Score = 38.0 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 69/249 (27%), Gaps = 13/249 (5%)

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRV 115
             + +  L  +    G    +E    +G     L+ +     LD     +  L  D    
Sbjct: 605 EQALQPLLERLQSLDGEAQKAETVAQLGEPLAALEAMAGD--LDMLSSLMASLRIDDATQ 662

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR-TDVVGMFVGGMRP 174
              I           + +     +   R+G+   E +  +          +   +   + 
Sbjct: 663 RTRI--IESISEIYARLNQAKARAEQRRKGLGSSETVAQFGAQFKLFGQGITNALAQAQD 720

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
                +Q  R   +   ++    ++             L + FE +K        ++   
Sbjct: 721 PERCDEQLSRLLVQLEELESQFGDHEQFLGDILAKREELLETFEAHKQTLLDERQRKAQG 780

Query: 235 ILFDVHEKEKKIE------ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           +L         ++         +EL A +  +       E+    + +  +  +AD+   
Sbjct: 781 LLDAARRILDSLQRRTARFTQAEELNAFFAADPLILKLRELAERLREL-KDSVKADDVEA 839

Query: 289 SLKKGKKFI 297
            LK  +   
Sbjct: 840 RLKAARDQA 848


>gi|260576764|ref|ZP_05844749.1| SurA domain protein [Rhodobacter sp. SW2]
 gi|259021016|gb|EEW24327.1| SurA  domain protein [Rhodobacter sp. SW2]
          Length = 402

 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 25/138 (18%)

Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----ADEAFQSLKK--- 292
            +   +  IS  E+     +  +   +       ++V P  +     A    + LK    
Sbjct: 138 AKFGPRASISEAEIDQAIAQIDK--NTSVQILASEIVIPAPEGQLPVALATARRLKAQSR 195

Query: 293 -GKKFIQLAEE--------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
             + F + A E        +G  L+   +G+   + +P       +    K G  +  + 
Sbjct: 196 TPEDFAKAARENSSSSSAGRGGRLNWTPVGNLPPDVVP-------VLLALKPGQVSAPVK 248

Query: 344 GSFGYVIAHVSNIKPSFT 361
                 +  +  IK    
Sbjct: 249 LEGSVALFLLHEIKAQEQ 266



 Score = 37.7 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 18/151 (11%)

Query: 46  VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
           V  + +                         +       +++  L+ L+         + 
Sbjct: 34  VNDRVISQYELDQRIS-------------FMTVLGLRENVEEVALNALIDERLQMTVAKQ 80

Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDV 164
             ++    +V    A    F G+  + S + F++ LA  G+  + + D  T  L  R  V
Sbjct: 81  YNVKLTPKQVE---AGMAEFAGRA-QLSTEEFLTALAPAGVEAQGFRDFVTAGLIWREIV 136

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
              F      S   +DQA     +N SV  +
Sbjct: 137 RAKFGPRASISEAEIDQAIAQIDKNTSVQIL 167


>gi|218889996|ref|YP_002438860.1| hypothetical protein PLES_12541 [Pseudomonas aeruginosa LESB58]
 gi|218770219|emb|CAW25981.1| hypothetical protein PLES_12541 [Pseudomonas aeruginosa LESB58]
          Length = 1746

 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 69/249 (27%), Gaps = 13/249 (5%)

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRV 115
             + +  L  +    G    +E    +G     L+ +     LD     +  L  D    
Sbjct: 605 EQALQPLLERLQSLDGEAQKAETVAQLGEPLAALEAMAGD--LDMLSSLMASLRIDDATQ 662

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR-TDVVGMFVGGMRP 174
              I           + +     +   R+G+   E +  +          +   +   + 
Sbjct: 663 RTRI--IESISEIYARLNQAKARAEQRRKGLGSSETVAQFGAQFKLFGQGITNALAQAQD 720

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
                +Q  R   +   ++    ++             L + FE +K        ++   
Sbjct: 721 PERCDEQLSRLLVQLEELESQFGDHEQFLGDILAKREELLETFEAHKQTLLDERQRKAQG 780

Query: 235 ILFDVHEKEKKIE------ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           +L         ++         +EL A +  +       E+    + +  +  +AD+   
Sbjct: 781 LLDAARRILDSLQRRTARFTQAEELNAFFAADPLILKLRELAERLREL-KDSVKADDVEA 839

Query: 289 SLKKGKKFI 297
            LK  +   
Sbjct: 840 RLKAARDQA 848


>gi|296213801|ref|XP_002807230.1| PREDICTED: LOW QUALITY PROTEIN: microtubule-associated protein
            1A-like [Callithrix jacchus]
          Length = 3032

 Score = 38.0 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 113/322 (35%), Gaps = 25/322 (7%)

Query: 217  FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
            F K  ++  +P  + I+    D   + K       E + E  + K++    + +T+E   
Sbjct: 1561 FSKSPESLSSPAMEDIAVEWEDKVPRLKDRT---SEQKKE-SEPKDEVLQQQDKTLEHKD 1616

Query: 277  FPNQK-----EADEAFQSLKKG-KKFIQLAEEQGKSL--SDISLGSFSKEYIP-DVSLAD 327
                K     E DEA  + KK  K+  +  E++G+ L   DISL    K   P D  L +
Sbjct: 1617 MIEPKDTGIHEKDEALDAKKKAVKQQDKALEQKGRDLEQKDISLEQKDKALEPKDKDLEE 1676

Query: 328  SIFSLAKKGDFTPVIHGSFGY-----VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
               +L +K            +      +              ++  K +  + +I +  +
Sbjct: 1677 KGKALEQKDKT--PEKKDKAFKQKDTALGQKDKALEPKDKDLEQKDKVLEQKDKIPEEKD 1734

Query: 383  KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
            K  +   R  E  A    + E+  R+   +   P      ++ + +         +  + 
Sbjct: 1735 KALDRKVRNAEHEAPEDKVAEMKGRDLEQTDKAPEQKHQAQEQRDRASEKKDQALEQKYW 1794

Query: 443  VFGKDDPLSKDHTVALPDGSYM-----WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
              G+ D   + +   L +          VQ  ++   ++  LEE   ++ K  +    A 
Sbjct: 1795 ALGQKDEALEQNVKTLEEKDQTQKQDSLVQEDKTRKPKETMLEEKSPEMIKAVEEKLEAL 1854

Query: 498  EVSSKANQLVLEYSKEGKNFRD 519
               +KA  L    ++EGK    
Sbjct: 1855 LEKTKALGLQESLTQEGKAREQ 1876


>gi|312113659|ref|YP_004011255.1| hypothetical protein Rvan_0880 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218788|gb|ADP70156.1| hypothetical protein Rvan_0880 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 365

 Score = 38.0 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 52/153 (33%), Gaps = 12/153 (7%)

Query: 52  PFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD 111
             +    + ++    + ++    V SE   +    K++++ L+      Q  + + +   
Sbjct: 87  SQAEAEQTAERIKKQLVEEAKGRVLSEGGGTS--RKQVIETLIEDKLKLQAAKRLEITVS 144

Query: 112 HGRVWGEIARSPLFHGKDNKFSH-DVFVSRLAREGINEKEYIDHYTKMLSRTDVVG---- 166
              V   +A+     G D K    + F  +   +GI+ K   +     L+  DV+     
Sbjct: 145 DKEVEEVLAQRAG--GGDGKKPQLNEFYQQFEADGISRKTVQNIIRAQLAWRDVIRRQYG 202

Query: 167 ---MFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
                +    P++          F+ R +   V
Sbjct: 203 PRIAAMLAALPTDDQKPADGDIQFDVRVLRLAV 235


>gi|148240800|ref|YP_001226187.1| hypothetical protein SynWH7803_2464 [Synechococcus sp. WH 7803]
 gi|147849339|emb|CAK24890.1| Conserved hypothetical protein [Synechococcus sp. WH 7803]
          Length = 247

 Score = 38.0 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 70/223 (31%), Gaps = 28/223 (12%)

Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
           L R  ++      + P + L+ +A   +     +                  A L  W E
Sbjct: 32  LVRRQLMEQATAELTPPDELVKKALINHCRQEQLQ---------------DEAALNNWLE 76

Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
           +   +    E      +   + +          E +  + + KE     +  T   L   
Sbjct: 77  ER--HLSREELLHQLSLPLKLSKLSLDWFGLQAEAR--FLQRKEAL---DQATYSLLRVK 129

Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDV-SLADSIFSLAKKG 336
           +   A E +  L+ G+  F  LA++  +     S G      +     L  ++   A  G
Sbjct: 130 DSGMAHELYLQLEAGEASFESLAKDHSEGPEKSSSGRVGPASLMRAHPLLRTVLRTATPG 189

Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-VKKDIANQMRIT 378
                +     +V+  +     +   SF E +++ +A ++   
Sbjct: 190 VVLEPMLIEQWWVVTRLEERHEA---SFDETMRQRMAAELLQN 229


>gi|254236638|ref|ZP_04929961.1| hypothetical protein PACG_02641 [Pseudomonas aeruginosa C3719]
 gi|126168569|gb|EAZ54080.1| hypothetical protein PACG_02641 [Pseudomonas aeruginosa C3719]
          Length = 1746

 Score = 38.0 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 69/249 (27%), Gaps = 13/249 (5%)

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRV 115
             + +  L  +    G    +E    +G     L+ +     LD     +  L  D    
Sbjct: 605 EQALQPLLERLQSLDGEAQKAETVAQLGEPLAALEAMAGD--LDMLSSLMASLRIDDATQ 662

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR-TDVVGMFVGGMRP 174
              I           + +     +   R+G+   E +  +          +   +   + 
Sbjct: 663 RTRI--IESISEIYARLNQAKARAEQRRKGLGSSETVAQFGAQFKLFGQGITNALAQAQD 720

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
                +Q  R   +   ++    ++             L + FE +K        ++   
Sbjct: 721 PERCDEQLSRLLVQLEELESQFGDHEQFLGDILAKREELLETFEAHKQTLLDERQRKAQG 780

Query: 235 ILFDVHEKEKKIE------ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           +L         ++         +EL A +  +       E+    + +  +  +AD+   
Sbjct: 781 LLDAARRILDSLQRRTARFTQAEELNAFFAADPLILKLRELAERLREL-KDSVKADDVEA 839

Query: 289 SLKKGKKFI 297
            LK  +   
Sbjct: 840 RLKAARDQA 848


>gi|107103242|ref|ZP_01367160.1| hypothetical protein PaerPA_01004311 [Pseudomonas aeruginosa PACS2]
          Length = 1733

 Score = 38.0 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 69/249 (27%), Gaps = 13/249 (5%)

Query: 57  INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRV 115
             + +  L  +    G    +E    +G     L+ +     LD     +  L  D    
Sbjct: 592 EQALQPLLERLQSLDGEAQKAETVAQLGEPLAALEAMAGD--LDMLSSLMASLRIDDATQ 649

Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR-TDVVGMFVGGMRP 174
              I           + +     +   R+G+   E +  +          +   +   + 
Sbjct: 650 RTRI--IESISEIYARLNQAKARAEQRRKGLGSSETVAQFGAQFKLFGQGITNALAQAQD 707

Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
                +Q  R   +   ++    ++             L + FE +K        ++   
Sbjct: 708 PERCDEQLSRLLVQLEELESQFGDHEQFLGDILAKREELLETFEAHKQTLLDERQRKAQG 767

Query: 235 ILFDVHEKEKKIE------ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
           +L         ++         +EL A +  +       E+    + +  +  +AD+   
Sbjct: 768 LLDAARRILDSLQRRTARFTQAEELNAFFAADPLILKLRELAERLREL-KDSVKADDVEA 826

Query: 289 SLKKGKKFI 297
            LK  +   
Sbjct: 827 RLKAARDQA 835


>gi|241258746|ref|YP_002978630.1| hypothetical protein Rleg_6124 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863216|gb|ACS60879.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 294

 Score = 38.0 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 21/179 (11%)

Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------- 281
            +    + F +    +++     EL+A +  + + Y  PE     Q+ F +++       
Sbjct: 98  RRMQQKMEFLLEPSVEELAPKPGELEAYFTAHAQDYRLPEKLAFRQIFFRSERTGDKGDL 157

Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT-- 339
            A      LK     I +      SL D SL    +  + D  L  + F      +    
Sbjct: 158 SATAVLSKLKSDAASIDM-----TSLGDSSLLP-ERTALSDAELIATSFGQDFVSELASA 211

Query: 340 ------PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
                   I  ++G  +  VS    S  ++  +    +       +  +     Y  ++
Sbjct: 212 PENRWYGPIRSAYGAHLVFVSERLMSHPLALSDAGTAVLADWESARRKDIADAHYAAMK 270


>gi|51557616|gb|AAU06448.1| surface antigen [Rickettsia conorii]
          Length = 837

 Score = 38.0 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 101/319 (31%), Gaps = 49/319 (15%)

Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRI----TKASEKVKEDYKRLEEFLALGTSMDEISR 406
             ++ +  +   + ++ K+ +           K +EK+K   + +E  + +G + D+I +
Sbjct: 117 IKLAEVTQAIDTTDKKDKERLQKLYTQLTSTQKTTEKLKSRAEEIETKIKIGENKDKIKK 176

Query: 407 REK----------------------IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
            EK                         + +   +         EV+A   ++  +    
Sbjct: 177 LEKELTSKNNKADRLFQKIEKIDIPANKVSIKSQETVPVTTASTEVSAFQAQQARINEAR 236

Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
                 +K        G     +   +   R++K +E    + +  K  K  +  S KA 
Sbjct: 237 QGVFNKNKSS------GGNA--RKSSAGTKREKKKQEAQKQLSEIKKQEKAIKTASDKAK 288

Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY----DGISQVFSGPVEMV 560
           ++     KE  +   +          + Q+N+++   K              +    +  
Sbjct: 289 EVAASAKKE-TSRTALRAMQDKMNGDSEQLNKIEENLKLLTPVVYNSSTGPTYKQSPKAT 347

Query: 561 KCFPIENGLSYVV----------FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
              P+ +G+  ++                +  P QE +  I   ++ + +  +   I YL
Sbjct: 348 PTIPLSHGVQRILGEQPEDEEGYLVPIKVQQQPYQEIEDPIPSHSKDIYEAKVSQYINYL 407

Query: 611 KSQYSVTVHDNLIQRYLDG 629
            S      +   I   +DG
Sbjct: 408 NSIQPNQSNQAQIDSVIDG 426


>gi|320178067|gb|EFW53047.1| Peptidyl-prolyl cis-trans isomerase ppiC [Shigella boydii ATCC
           9905]
          Length = 48

 Score = 38.0 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
            ++   +K A +  + +K G  F +LA++     S    G
Sbjct: 9   HILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGG 48


>gi|296134230|ref|YP_003641477.1| hypothetical protein TherJR_2742 [Thermincola sp. JR]
 gi|296032808|gb|ADG83576.1| hypothetical protein TherJR_2742 [Thermincola potens JR]
          Length = 230

 Score = 38.0 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 72/225 (32%), Gaps = 41/225 (18%)

Query: 18  LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG----- 72
           L + F+ F++   +  +F ++  + V S   + V       + K +LG I ++       
Sbjct: 7   LGIAFLCFVLAVGAIFVFKINDINAVAS---KPVTKEEIKQNLK-QLGQIRKETRENIKV 62

Query: 73  ---------------------FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD 111
                                 ++ ++       +K ++++++    L+       L A 
Sbjct: 63  VAKIDKMGVTNEEFLARKVWLQILAAQNGDKSPTNKDVMNSILRDKVLEAEAARRNLTAS 122

Query: 112 HGRVWGEIARSPLFHGKDNK--FSHDVFVSRLAREGINEKEY-----IDHYTKMLSRTDV 164
                  +     +  + N      ++  +     GI E +Y     + +Y K LSR  V
Sbjct: 123 VDETKVYLNELRKYQDQSNGTITGREMIQNFAEGLGITEDQYWNEWAVPYYQKELSRAKV 182

Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
                  ++P      +A       R  +Y     + +   A   
Sbjct: 183 AKAIAQEVQPLPNEDSEAYS----KRQKEYFEKVVKDLIDKAKVE 223


>gi|94265725|ref|ZP_01289462.1| hypothetical protein MldDRAFT_4726 [delta proteobacterium MLMS-1]
 gi|93453738|gb|EAT04114.1| hypothetical protein MldDRAFT_4726 [delta proteobacterium MLMS-1]
          Length = 229

 Score = 38.0 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 9/84 (10%)

Query: 30  LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
           +       S    +V VG   +  +        EL  + +              G  +++
Sbjct: 25  IGAEAGPASDEGYIVQVGGNYITPADVEQ----ELAGMPENRRTNY-----EMPGGKQRL 75

Query: 90  LDNLVSGATLDQFIEDIGLEADHG 113
           +D ++      Q  +  GL+    
Sbjct: 76  IDEMIKREMFRQEAQRAGLDQSEE 99


>gi|1314566|gb|AAC44059.1| unknown [Sphingomonas sp. S88]
          Length = 300

 Score = 38.0 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN----RHVP 203
            +       + ++   ++   +         LD+   F  + R  D ++L      +   
Sbjct: 56  PQGTDRKLAEQMALQRIIERKILAKYAREQKLDKTPVFLIQQRRADELILTTLLRDKIAG 115

Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
            IA P++A + Q+   + D +   +   I  I+F       K +
Sbjct: 116 GIAQPTDAEIAQYEAAHPDRFAQRKIYSIEQIVFPPPGSAAKFK 159


>gi|257438523|ref|ZP_05614278.1| putative ABC transporter, permease protein [Faecalibacterium
           prausnitzii A2-165]
 gi|257199102|gb|EEU97386.1| putative ABC transporter, permease protein [Faecalibacterium
           prausnitzii A2-165]
          Length = 1089

 Score = 38.0 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 31/253 (12%)

Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
                        + +LD          + DY  +    V   A          ++ Y D
Sbjct: 181 QYFSATQETSTVGDGILDALVFVQDGELTADYYTVCYLKVADAAQ---------YDNYSD 231

Query: 223 NYRAP--------EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
            Y+          +     + +    +  +      ++ +  Y + K +    +    EQ
Sbjct: 232 EYQTAVDTVADRLDAISKEHCVARRAQLIEDATTQLNDAKQTYSEQKAEAER-QFAQAEQ 290

Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV--SLADSIFS- 331
            +   Q+E D A   L  G+   +LA ++      +  G+ +     +      D +   
Sbjct: 291 KLTDAQRELDAAKAQLDAGE--AELAAQKAALPDTMQSGAATLVSSEEQVLEFEDQLQQI 348

Query: 332 --LAKKGDFTPVIHGSFGYVIAHVSNIKPS--FTVSFQEVKKDIANQMRITKAS-EKVKE 386
             L         +    GY    ++N + +        E   ++ + +   +A+ + +K 
Sbjct: 349 QLLVNLKQVADPL---LGYAETALNNAQKALDEAEPEDEEYTELRDALAKAQAAYDNIKG 405

Query: 387 DYKRLEEFLALGT 399
                +  L  G 
Sbjct: 406 QLDGYQAQLDAGK 418


>gi|222528264|ref|YP_002572146.1| hypothetical protein Athe_0222 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455111|gb|ACM59373.1| conserved hypothetical protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 237

 Score = 38.0 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/212 (9%), Positives = 54/212 (25%), Gaps = 34/212 (16%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINS--WKQELGMISQKIGFVVNSERARSV--GLDKKILDN 92
            + S  +  V    +       +  +++       K+G +       +      K++L+ 
Sbjct: 48  SNNSDIIAKVDGIPIYKKDLEIADLYEKVRFDNLAKLGAITKQNTLVTPYQKTKKELLNE 107

Query: 93  LVSGATLDQFIEDIGLEADHGR-------VWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
           L+    L +  +  G              V   I        K +  +       L    
Sbjct: 108 LIERKALMESAKKEGYLVSKEEAEDYFNNVKKTIDDVLNEKIKGDIENAKQAKEVL---- 163

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
                Y    ++      V+  +   +  S  L  +   +  E+                
Sbjct: 164 ---DMYKTQLSENEFNEKVISAYQEILTISKYLNAKVDEYVKEH---------------- 204

Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
            + +   + ++   +K   ++     I     
Sbjct: 205 PNATPDEVKKFINDFKKKVKSNSKIEIIISEL 236


>gi|150014949|ref|YP_001307203.1| 3D domain-containing protein [Clostridium beijerinckii NCIMB
          8052]
 gi|149901414|gb|ABR32247.1| 3D domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 350

 Score = 38.0 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 11/94 (11%)

Query: 1  MLEIIR-----KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
          M+E +R       S    AKI +  + + F++  ++         + V+S+  ++  F +
Sbjct: 1  MIEKLRQFIRQSFSNGPKAKIIIGTIAIAFVV--VTAVTIMSIRKTLVISIDGKEATFVT 58

Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
          +  + K  L    Q+ G  V+ +      L+ K+
Sbjct: 59 YKGTVKGVL----QENGIEVSPKDKVQPSLESKV 88


>gi|99036063|ref|ZP_01315098.1| hypothetical protein Wendoof_01000044 [Wolbachia endosymbiont of
          Drosophila willistoni TSC#14030-0811.24]
          Length = 63

 Score = 37.7 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 29 GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88
          G+ + L        V  VG++ +    + + ++     IS   G   + E+ + +  D  
Sbjct: 2  GIGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQIS---GSDASREQVKKLKYD-- 56

Query: 89 ILDNLVS 95
          +L+ L+ 
Sbjct: 57 LLNALIE 63


>gi|319938240|ref|ZP_08012637.1| hypothetical protein HMPREF9488_03473 [Coprobacillus sp. 29_1]
 gi|319806533|gb|EFW03191.1| hypothetical protein HMPREF9488_03473 [Coprobacillus sp. 29_1]
          Length = 311

 Score = 37.7 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 68/209 (32%), Gaps = 15/209 (7%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           ++   +    P    +         N    Y    + +  A     +A+ +  +E   D 
Sbjct: 51  LLDQLITANFPVTSDMKDNASNIVSNIEASYKNQYSDNDEAQKQLESALSSSGYES-MDA 109

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
           Y+    + + Y  F     +      ++  +  Y++   +Y S    ++     P + E 
Sbjct: 110 YKESLIQSLQYSEFIKKYVKANF---DEVFEDYYKQEAPRYISMIKVSMSDPDKPTETET 166

Query: 284 D---EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK-------EYIPDVSLADSIFSLA 333
           +   E    LK  K F ++A       S  + G+          +      +  +  SL 
Sbjct: 167 EKLNEVKSLLKTDKGFAEIASSYSDDDSKSAKGNLGIIDSTSGLKDSYGEDVEKAALSL- 225

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
           +KG  +  I G+ GY   + ++       
Sbjct: 226 EKGKVSDAIKGTNGYYFLYCTSTDKDTIK 254


>gi|154336505|ref|XP_001564488.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134061523|emb|CAM38553.1| hypothetical protein, unknown function [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1058

 Score = 37.7 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 71/214 (33%), Gaps = 7/214 (3%)

Query: 369 KDIANQMRITKAS--EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
           + +A ++   +A   +   E  ++  E   L   ++E S   + ++ ++       + + 
Sbjct: 135 EKLAAELEEQRAEAEKLAAELVEQRAEAEKLAAELEEKSAEAEKLAAEVVEQRAEAEKLA 194

Query: 427 GKEVAAIPYKEQLLFRVF---GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
            + V      E+L   +     + + L  +      +   +  +++E     ++   EV+
Sbjct: 195 AEVVEQRAEAEKLAAELVEQRAEAEKLGAELEEQRAEAEKLAAELEEKSAEAEKLAAEVV 254

Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
               +  K      E  ++A +L  E  ++      +   L        ++     E + 
Sbjct: 255 EQRAEAEKLAAEVVEKRAEAEKLAAELVEQRAEAGKLAAELEEQRAEAEKLAAELVEQRA 314

Query: 544 FGYDGISQV--FSGPVEMVKCFPIENGLSYVVFK 575
                 ++V  F             +G   V+ K
Sbjct: 315 EAEKLAAEVAAFRAKRNAALEARDADGTLPVLEK 348


>gi|323441500|gb|EGA99152.1| cell wall surface anchor family protein [Staphylococcus aureus O46]
          Length = 1976

 Score = 37.7 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 933  NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 992

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 993  QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1052

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1053 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1105

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1106 QAFNQINQNQTNDQVDATTNQ-------AVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1158

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1159 IDNSLDSTDNEKEVASQALTKEKEKALAAIDQAQTNSQVNQAA 1201


>gi|237716901|ref|ZP_04547382.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405669|ref|ZP_06082219.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644391|ref|ZP_06722154.1| putative lipoprotein [Bacteroides ovatus SD CC 2a]
 gi|229442884|gb|EEO48675.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356544|gb|EEZ05634.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640226|gb|EFF58481.1| putative lipoprotein [Bacteroides ovatus SD CC 2a]
          Length = 330

 Score = 37.7 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 11/74 (14%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           ++ +  V  V  +++  S   +  KQE+  I              +  +  ++L  L+  
Sbjct: 21  INKNDVVAEVNGEQILLSELASQSKQEIFDI-----------LNTAYEIKSRVLAGLIKQ 69

Query: 97  ATLDQFIEDIGLEA 110
             L+   +   +  
Sbjct: 70  KLLEDAAKKENMSL 83


>gi|254464586|ref|ZP_05077997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacterales
           bacterium Y4I]
 gi|206685494|gb|EDZ45976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacterales
           bacterium Y4I]
          Length = 305

 Score = 37.7 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 47/143 (32%), Gaps = 18/143 (12%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           +  ++V  Q +           +       +    +          +   + L++     
Sbjct: 40  APAITVNDQVITRYELE-----QRARFQAALRVPGDPL--------ETAREELINDRLKL 86

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
             ++  G+E     +    A      G+ N  S + F++ L ++G+  +   D     L 
Sbjct: 87  MVLKQAGIELSEEDIT---AGMEELAGRAN-LSLNEFLTVLQQQGVAPQTLRDFTKVGLG 142

Query: 161 -RTDVVGMFVGGMRPSNLLLDQA 182
            R      F+   RP+   +D+A
Sbjct: 143 WREYTRARFLSRARPTPEEIDRA 165


>gi|49486581|ref|YP_043802.1| putative surface anchored protein [Staphylococcus aureus subsp.
            aureus MSSA476]
 gi|49245024|emb|CAG43485.1| putative surface anchored protein [Staphylococcus aureus subsp.
            aureus MSSA476]
          Length = 2186

 Score = 37.7 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 94/285 (32%), Gaps = 28/285 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAFNQINQNQTNDQVDTTTNQ-------ALNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                +   D      +Q + K+   ++ A  ++Q +  V+     
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAATN 1413


>gi|309791176|ref|ZP_07685708.1| glutamate racemase [Oscillochloris trichoides DG6]
 gi|308226738|gb|EFO80434.1| glutamate racemase [Oscillochloris trichoides DG6]
          Length = 256

 Score = 37.7 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 18/131 (13%)

Query: 458 LPDGSYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAE--------EVSSKANQLV 507
           LPD   +++      P   R   E  V   V  +W   + A+          S+ A+QL 
Sbjct: 22  LPDHDLLYLADSAYCPYGPRPAAEVRVRAQVCANWLLQQGADLIVIACNTATSAAADQLR 81

Query: 508 LEY------SKEGKNFRDIGKNLG--ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
            E        + G          G    L T+  +      N    +   +Q+F+ P   
Sbjct: 82  AELPVPVIGLEPGLKPAIAASRNGRVGVLATSGTLRGERFMNLVRRFASRAQIFTMPSPD 141

Query: 560 VKCFPIENGLS 570
           +  +     L+
Sbjct: 142 LVGYVEAGDLN 152


>gi|222151336|ref|YP_002560492.1| hypothetical protein MCCL_1089 [Macrococcus caseolyticus JCSC5402]
 gi|222120461|dbj|BAH17796.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 1132

 Score = 37.7 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 69/230 (30%), Gaps = 30/230 (13%)

Query: 62  QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED-----IGLEADHGRVW 116
            +   +  ++   V+   A   G   +I+D  +  A ++   +        LE D   ++
Sbjct: 238 NQFDQLKGQLNQQVDDLTADRDGFYDRIIDY-IERAQINYLNQRKDGLLEQLEVDEEDIF 296

Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV----------- 165
             + +  +    +++         L +    E + I     ++    ++           
Sbjct: 297 QALDQLHIQQSLNSE------QQLLMQNDRTE-QLIKEVRNIIKNAYLIPFELRERIGTM 349

Query: 166 -GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
              F    +       Q K    +N  +D ++     +       N  L  ++E+Y    
Sbjct: 350 LETFATNYKVGGFFNKQVKLENIQNEKIDNVIEMLNDLLDKQI--NFQLKNYYEQYMKYS 407

Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAE---YEKNKEKYFSPEIRT 271
             P   +  Y        +  I+   +  +     Y +  + +   EI  
Sbjct: 408 EKPALLKDIYFHITKENVKALIKPQPEVTKEYVLIYSEQLKAFIEKEIVQ 457


>gi|82701375|ref|YP_410941.1| hypothetical protein Nmul_A0241 [Nitrosospira multiformis ATCC
           25196]
 gi|82409440|gb|ABB73549.1| hypothetical protein Nmul_A0241 [Nitrosospira multiformis ATCC
           25196]
          Length = 330

 Score = 37.7 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 79/247 (31%), Gaps = 17/247 (6%)

Query: 210 NAVLTQWFEKYKDNYRAPE--------YKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
           +  L       K   R+PE         + I    +         + + +E +  Y ++ 
Sbjct: 88  DQELAVEQAINKKLDRSPEVLMALDNARREILARAYLEQITAATPKPTVEEAKTYYSEHP 147

Query: 262 EKYFSPEIRTVEQLVFPNQKE-ADEAFQSLKKGKKFIQLAE-EQGKSLSDISLGSFSKEY 319
           + +    I  ++++V P+    ADE  + L  GK    +A+  +GK +   +  +     
Sbjct: 148 QLFAERRIYNIQEIVLPSSAGVADELREMLDSGKPMEDIAKWLKGKDIKFAAGSATRSAE 207

Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--KDIANQMRI 377
              + +   I  L K G    +     G     +  I  + T    E      I   +  
Sbjct: 208 QIPLEILPKIHPL-KPGQGLLIQ----GPQSITLMRIAAAQTAPITEAAALPRIQQFLGN 262

Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
            +A+E  + + K L+    +    +     +     +  +   A         A  P  E
Sbjct: 263 QRAAEAARGEIKALKAKANITYMGEFAVPDKNASGGENSVSSVASARDSSSPQADNPGLE 322

Query: 438 QLLFRVF 444
           +    + 
Sbjct: 323 KGAAGLL 329


>gi|328790880|ref|XP_397439.4| PREDICTED: eukaryotic translation initiation factor 3 subunit A
           [Apis mellifera]
          Length = 1098

 Score = 37.7 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 67/189 (35%), Gaps = 22/189 (11%)

Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA--SEKVKEDYKRLEEFLAL 397
            +   S G  +    +      +  +++    A +++  +    +K+K   K++ ++L  
Sbjct: 642 QISQTSHGQKVLKKLDEDEIKKLDAEQIAAREAEELQKERREMQQKLKSQEKKI-DYLER 700

Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
              ++EI   EK V   + L     +  + + +AA   + Q       +   + +DH + 
Sbjct: 701 AKRLEEIPLLEKAVEEKMELAKQRWEQQEAERIAAAIEERQQAVATRERMARMKEDHDIF 760

Query: 458 LPDGSYMWVQIKESIPARDRKLEEV----------------LTDVKKDWKTVKTAEEVSS 501
           L     +  + K     + ++ E+V                  + K  W+  +       
Sbjct: 761 LAK---ILAERKSIYLEKLKEFEKVLNEERVSRLLKRKMERKAERKAKWEKERAEAIERR 817

Query: 502 KANQLVLEY 510
           +  +L ++ 
Sbjct: 818 RLEELRIKQ 826


>gi|283770834|ref|ZP_06343726.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            subsp. aureus H19]
 gi|283460981|gb|EFC08071.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            subsp. aureus H19]
          Length = 2182

 Score = 37.7 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 92/283 (32%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1139 NATTEEKQVALNQVDQELATAINNINQADTNGEVDQAQQLGTKAINAIQPNIVKKPAALA 1198

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF---GKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  T A  
Sbjct: 1199 QINQHYNAKLAEINATPDATDDEKNAAINILNQDRQQAIESVKQANTNAEVDQAATTAEN 1258

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1259 NIDAVLVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1311

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        I+ + +   E+V        +   V +    
Sbjct: 1312 QAFNQINQNQTNDQVDTTTNQ-------AINAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1364

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D       Q + K+   ++ A  ++Q +  V+   
Sbjct: 1365 IDNSLDSTDNEKEVALQALAKEKEKALAAIDQAQTNSQVNQAA 1407


>gi|257425869|ref|ZP_05602293.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            55/2053]
 gi|257428536|ref|ZP_05604934.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            65-1322]
 gi|257433851|ref|ZP_05610209.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            E1410]
 gi|257436768|ref|ZP_05612812.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            M876]
 gi|282914550|ref|ZP_06322336.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus M899]
 gi|282924896|ref|ZP_06332562.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            subsp. aureus C101]
 gi|293503628|ref|ZP_06667475.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            subsp. aureus 58-424]
 gi|293510644|ref|ZP_06669349.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            subsp. aureus M809]
 gi|293537185|ref|ZP_06671865.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus M1015]
 gi|257271563|gb|EEV03709.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            55/2053]
 gi|257275377|gb|EEV06864.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            65-1322]
 gi|257281944|gb|EEV12081.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            E1410]
 gi|257284119|gb|EEV14242.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            M876]
 gi|282313262|gb|EFB43658.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            subsp. aureus C101]
 gi|282321731|gb|EFB52056.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus M899]
 gi|290920030|gb|EFD97098.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus M1015]
 gi|291095294|gb|EFE25559.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            subsp. aureus 58-424]
 gi|291466535|gb|EFF09056.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            subsp. aureus M809]
          Length = 2035

 Score = 37.7 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 93/283 (32%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +D+A  +           + +A +   +    ++   +    S+ 
Sbjct: 992  NATTEEKQVALNQVDQDLATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPASLA 1051

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            + ++      +++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1052 QTNQHYSAKLVEINATPDATDDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1111

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1112 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1164

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        I+ + +   E+V        +   V +    
Sbjct: 1165 QAFNQINQNQTNDQVDATTNQ-------AINAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1217

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D       Q + K+   ++ A  ++Q +  V+   
Sbjct: 1218 IDNSLDSTDNEKEVALQALAKEKEKALAAIDQAQTNSQVNQAA 1260


>gi|25010466|ref|NP_734861.1| hypothetical protein gbs0393 [Streptococcus agalactiae NEM316]
 gi|25010778|ref|NP_735173.1| hypothetical protein gbs0723 [Streptococcus agalactiae NEM316]
 gi|25011039|ref|NP_735434.1| hypothetical protein gbs0986 [Streptococcus agalactiae NEM316]
 gi|23094819|emb|CAD46037.1| Unknown [Streptococcus agalactiae NEM316]
 gi|23095132|emb|CAD46367.1| unknown [Streptococcus agalactiae NEM316]
 gi|23095439|emb|CAD46645.1| unknown [Streptococcus agalactiae NEM316]
          Length = 933

 Score = 37.7 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 56/171 (32%), Gaps = 15/171 (8%)

Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
                +             +     +  +   +N++   I   N+   A A+ +NA L +
Sbjct: 162 RNKAKQQAQDDQKAKIDAENKAESQRVSQLNAQNKA--KIDAENKDAQAKANATNAQLQK 219

Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
            ++      ++ E         +   + K  + +N +LQ +Y+     Y           
Sbjct: 220 DYQAKLAEIKSVEAYNAGVRQRNKDAQAK-ADATNAQLQKDYQAKLALYNQ--------- 269

Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
               + +A+   QS+     F   A+ +G   ++      + +  PD S  
Sbjct: 270 --ALKAKAEADKQSINNVA-FDIKAQAKGVDNAEYGNSIMTAKTKPDGSFE 317


>gi|21283428|ref|NP_646516.1| hypothetical protein MW1699 [Staphylococcus aureus subsp. aureus MW2]
 gi|300911613|ref|ZP_07129057.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus TCH70]
 gi|21204869|dbj|BAB95564.1| MW1699 [Staphylococcus aureus subsp. aureus MW2]
 gi|300887034|gb|EFK82235.1| cell wall surface anchor family protein [Staphylococcus aureus subsp.
            aureus TCH70]
          Length = 2186

 Score = 37.7 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 94/285 (32%), Gaps = 28/285 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAFNQINQNQTNDQVDTTTNQ-------ALNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                +   D      +Q + K+   ++ A  ++Q +  V+     
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAATN 1413


>gi|253734460|ref|ZP_04868625.1| cell surface anchored protein [Staphylococcus aureus subsp. aureus
            TCH130]
 gi|253727514|gb|EES96243.1| cell surface anchored protein [Staphylococcus aureus subsp. aureus
            TCH130]
          Length = 2186

 Score = 37.7 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 93/283 (32%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR---VFGKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  TVA  
Sbjct: 1203 QINQHYNAKLAEINATPDATNDEKNAAINTLNLDRQQAIESIKQANTNAEVDQAATVAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        +  + +   E+V        +   V +    
Sbjct: 1316 QAFNQINQNQTNDQVDTTTNQ-------ALKAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D      +Q + K+   ++ A  ++Q +  V+   
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAA 1411


>gi|237722124|ref|ZP_04552605.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229448993|gb|EEO54784.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 330

 Score = 37.7 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 11/74 (14%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
           ++ +  V  V  +++  S   +  KQE+  I              +  +  ++L  L+  
Sbjct: 21  INKNDVVAEVNGEQILLSELASQSKQEIFDI-----------LNTAYEIKSRVLAGLIKQ 69

Query: 97  ATLDQFIEDIGLEA 110
             L+   +   +  
Sbjct: 70  KLLEDAAKKENMSL 83


>gi|289548217|ref|YP_003473205.1| peptidase M23 [Thermocrinis albus DSM 14484]
 gi|289181834|gb|ADC89078.1| Peptidase M23 [Thermocrinis albus DSM 14484]
          Length = 419

 Score = 37.7 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 90/252 (35%), Gaps = 30/252 (11%)

Query: 238 DVHEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
            +    ++  +S  +++   +  KE +    +   +       +K+ D A   +KKG   
Sbjct: 32  TLESIAREYGVSLSDIKRYNKNLKENRLKVGQQICIPVKTKAEKKQGDYAIYRVKKGDTL 91

Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP--------VIHGSFGY 348
            ++A++ G  + +++  +  K ++        I + +     +               G 
Sbjct: 92  EEIAQKFGVDVKELAKFNGLKSHVIKEGQELKIPARSHGEKVSKKGKEVDYTTYTVKKGA 151

Query: 349 VIAHVSNIKPSFTVSFQEVKKDIA-------------NQMRITKASEKVKEDYKRLEEF- 394
            + HV+          +++  ++               +M+  K +EKV++  K+ EE  
Sbjct: 152 KLQHVAQKLGVPLRELEKLNPELKGKWLKPGTVVKIPKKMKEEKVAEKVEKVSKKGEEVD 211

Query: 395 -----LALGTSMDEISRREKIVSIDLPLVD--FAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
                +  G  +  ++R+  +   +L  ++    GK +K   V  IP K +        +
Sbjct: 212 YTTYTVKKGAKLQHVARKLGVPLRELEKLNPELKGKWLKPGTVVKIPKKMKEEKVAEKVE 271

Query: 448 DPLSKDHTVALP 459
               K     +P
Sbjct: 272 KVEKKTEREKIP 283


>gi|297568052|ref|YP_003689396.1| hypothetical protein DaAHT2_0064 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296923967|gb|ADH84777.1| hypothetical protein DaAHT2_0064 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 220

 Score = 37.7 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 7/78 (8%)

Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
           + +   + + R         G+  S     + +      R     +     + A    S+
Sbjct: 76  FDEMIKREMFRQ---EAVRAGLDQSEAYRKRVEYLA---RLALVEMFLEEKIQASVTVSD 129

Query: 211 AVLTQWFEKYKD-NYRAP 227
             +  ++E  KD  +  P
Sbjct: 130 REVQDYYEANKDTEFTNP 147


>gi|269792565|ref|YP_003317469.1| trigger factor [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100200|gb|ACZ19187.1| trigger factor [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 447

 Score = 37.7 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 38/129 (29%), Gaps = 4/129 (3%)

Query: 53  FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
                   +Q      Q +  +   E A +  ++++  + +     L    +  G++   
Sbjct: 323 VHEKQRVTQQLKKEWDQYLKEMETDEAAFAAKMEERAREIIKRELVLWTLADREGIDVSP 382

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             + GEI +  +            F S LA       E +    K  +   +V       
Sbjct: 383 EDLDGEIRKMSM----SVGVDESKFRSFLASNRQRLDEMVSSIRKRKTMDWLVSAVKVEN 438

Query: 173 RPSNLLLDQ 181
             ++   D 
Sbjct: 439 FDTDAKADA 447


>gi|71280548|ref|YP_268187.1| hypothetical protein CPS_1444 [Colwellia psychrerythraea 34H]
 gi|71146288|gb|AAZ26761.1| hypothetical protein CPS_1444 [Colwellia psychrerythraea 34H]
          Length = 276

 Score = 37.7 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 68/181 (37%), Gaps = 21/181 (11%)

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
           I F + +     E +N EL   Y+++ E Y + ++ + +Q+        DE  Q +    
Sbjct: 101 IEFLIEDLVTTKEPNNTELMQFYQQHIENYQTQQVLSFQQVHLSIDGNHDELQQKIV--- 157

Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGDF--------TPVIHGS 345
              QL+ +QGK+     L     +     S+  D +F  +             +  I  S
Sbjct: 158 -LQQLSIKQGKTPQ-GDLKFLPYQVTNKDSVQIDRLFGKSFSKQLIHAPLSSWSGPIESS 215

Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQ-----MRITKA--SEKVKEDYKRLEEFLALG 398
            G     +    P+   +F+ +K  + +      ++  KA   E++ + Y   +E  A  
Sbjct: 216 HGVHFVLIEQRSPAVNKAFESIKSTVLSDWQYKNLQSAKASFEERLLKSYTIAQEPAAKA 275

Query: 399 T 399
            
Sbjct: 276 E 276


>gi|51557618|gb|AAU06449.1| surface antigen [Israeli tick typhus rickettsia]
          Length = 1859

 Score = 37.7 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 94/277 (33%), Gaps = 25/277 (9%)

Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS--IDLPLVDFAGKDVK 426
           ++I  +++I +  +K+K+  K L         + +   +  I++  + +   +       
Sbjct: 338 EEIETKIKIGENKDKIKKLEKELTSKNNKADRLFQKIEKIDILANKVSIKSQETVPVTTV 397

Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
             EV+A   ++  +          +K        G     +   +   R++K +E    +
Sbjct: 398 STEVSAFQAQQARINEARQGVFNKNKSS------GGNA--RKSSAGTKREKKKQEAQKQL 449

Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
            +  K  K  +  S K  ++     KE  +   +          + Q+N+++   K    
Sbjct: 450 SEIKKQEKAIKTASDKVKEVAASAKKE-TSRTALRAMQDKMNGDSEQLNKIEENLKLLTP 508

Query: 547 DG----ISQVFSGPVEMVKCFPIENGLSYVV----------FKVTNSKVGPVQEKDKFIS 592
           D     I   +    +     P+ +G+  ++                +  P QE +  I 
Sbjct: 509 DVYNSSIGPTYKQSPKAKPTIPLSHGVQRILGEQPEDEQGYLVPIKVQQQPYQEIEDPIP 568

Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
             ++ + +  +   I YL S      +   I   +DG
Sbjct: 569 SHSKDIYEAKVSQYINYLNSIQPNQSNQAQIDSVIDG 605


>gi|289450294|ref|YP_003474521.1| hypothetical protein HMPREF0868_0179 [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184841|gb|ADC91266.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 587

 Score = 37.7 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 75/230 (32%), Gaps = 20/230 (8%)

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
              +P   D   + + +++++++  ++   Y+   + L +  E++KK       LQ +  
Sbjct: 220 AVSLPDTIDVPASDVEKYYKEHESEFKQATYRNFVFALPEPSEEDKKAAP--GVLQKKQA 277

Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
           +N  K    E   + +     +++     +   K K      + +    S++   S   +
Sbjct: 278 ENMSKMK--ESVDMFKAAVKTEQDFINQAKKFAKEKDKAAYDDAKKTLRSNVPSSSIGNK 335

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-----------SFQEV 367
            I D  +A       K GD   V  G   Y + +                          
Sbjct: 336 QISDWLMAPE----RKTGDI-EVFAGPNNYQVIYFLKADKDTNKYPAVGRILFSMKTDSE 390

Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
           KK   +     KA E +    +++   +    S++ +  +      +   
Sbjct: 391 KKSAQDLEAKKKAQEALVATAEKVLPEIKDKDSLEAVGSKLAEDGENAKA 440


>gi|229586322|ref|YP_002844823.1| Cell surface antigen Sca2 [Rickettsia africae ESF-5]
 gi|228021372|gb|ACP53080.1| Cell surface antigen Sca2 [Rickettsia africae ESF-5]
          Length = 1933

 Score = 37.7 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 69/204 (33%), Gaps = 19/204 (9%)

Query: 54   SSFINSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
               + S+KQ L     Q    V++ E+ +S    K++LD     +   Q ++   L++  
Sbjct: 1349 QEKLQSFKQVLNQEKLQSFKQVLDQEQLQSF---KQVLDQKQLQS-FKQELDQEQLQSFK 1404

Query: 113  GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE------KEYIDHYTKMLSRTDVVG 166
              +  E  +   F  + ++     F   L +E +        +E +  + + L +  +  
Sbjct: 1405 QELDQE--QLQSFKQELDQEQLQSFKQELDQEQLQSFKQVLDQEQLQSFKQELDQEQLQS 1462

Query: 167  MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
                      L  +Q + F  E            +     + S    TQ  +  K + ++
Sbjct: 1463 ------FKQELDQEQLQSFKQELDQEQLQSFKQENEATNDESSTKDDTQPEDSNKKSEQS 1516

Query: 227  PEYKRISYILFDVHEKEKKIEISN 250
                 +S  L   ++ +      +
Sbjct: 1517 DSKTALSPRLLSSNDSKNDKSSDD 1540


>gi|296123570|ref|YP_003631348.1| trigger factor [Planctomyces limnophilus DSM 3776]
 gi|296015910|gb|ADG69149.1| trigger factor [Planctomyces limnophilus DSM 3776]
          Length = 516

 Score = 37.7 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 10/118 (8%)

Query: 53  FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL----DNLVSGATLDQFIEDIGL 108
                N+ ++E+  + Q+ GF  +  RAR   L +K L      L     LD+      +
Sbjct: 362 RRQVENALRREMLEM-QQAGFSFDEIRARENELRQKSLTTTRQALKEHFVLDRVATKESI 420

Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
           E +   +  EI        +          +RL + G+ E        +  +   ++ 
Sbjct: 421 EVEPYEIDAEIGLMAYQQMET----PRKLRARLQKNGMIEN-LEAQIRERKAVDHILA 473


>gi|3327124|dbj|BAA31630.1| KIAA0655 protein [Homo sapiens]
          Length = 1083

 Score = 37.7 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 28/265 (10%), Positives = 78/265 (29%), Gaps = 24/265 (9%)

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            +   +     +  +  + + +++   +A++   E  + L E      S  E +R  K+ 
Sbjct: 409 ELEEQRKQKQKALVD-NEQLRHELAQLRAAQLEGERSQGLREEAERKASATE-ARYNKLK 466

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
                LV    + ++          +QL      +++               +  Q+++ 
Sbjct: 467 EKHSELVHVHAELLR----KNADTAKQLTVTQQSQEEVARVKEQ--------LAFQVEQV 514

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
               + KLEE    ++K  + ++      ++A + +    +           L A     
Sbjct: 515 KRESELKLEEKSDQLEKLKRELEAKAGELARAQEALSHTEQSKSELSSRLDTLSAEKDAL 574

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
           +   R    +       + +  +      +    E G             G + E++   
Sbjct: 575 SGAVRQREADLLAAQSLVRETEAALSREQQRSSQEQGELQ----------GRLAERESQE 624

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSV 616
             L Q +  +    +         +
Sbjct: 625 QGLRQRLLDEQFAVLRGAAAEAAGI 649


>gi|146340301|ref|YP_001205349.1| hypothetical protein BRADO3324 [Bradyrhizobium sp. ORS278]
 gi|146193107|emb|CAL77118.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 287

 Score = 37.7 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 17/132 (12%)

Query: 34  LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93
           + S    S VV V    +                  K+ F+   ++       +++L+ L
Sbjct: 1   MTSAHAQSIVVMVNGDPITDYDIEQ---------RSKLNFLSTHKQ----QSRQEVLNEL 47

Query: 94  VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
           +      +  +  G+E     +    A      G   + + +     L  +G+  +    
Sbjct: 48  IDDKVKIKEGKKFGVEPSSSDIDQSFAGM----GSRMRLNAEQLTRSLESQGVRPETLKQ 103

Query: 154 HYTKMLSRTDVV 165
                +  T +V
Sbjct: 104 RIKAEIVWTSLV 115


>gi|154149306|ref|YP_001405723.1| putative periplasmic protein [Campylobacter hominis ATCC BAA-381]
 gi|153805315|gb|ABS52322.1| putative periplasmic protein [Campylobacter hominis ATCC BAA-381]
          Length = 275

 Score = 37.7 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 84/254 (33%), Gaps = 29/254 (11%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
              +   G+N  + ++   K   +  V  +   G+  S+   ++  +       +    +
Sbjct: 40  NKMIKTRGLNPNDALEVLIKN--KLQVAEIKRLGIITSDYETNERIKAIAAQNKISVDTM 97

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
                      S       F++   N    E    +              ++ + ++  Y
Sbjct: 98  QASIKKQGGTWSE------FKENVRNSLQEEKLYAAIFKEVAK------SVTPENVEKFY 145

Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
            +N   + + +   + + +  N      A  ++K GK      ++    L +  +    +
Sbjct: 146 NENPSLFTTYDSVNLIRYISKNA----NALSAIKAGKN-ADGVQKISGVLKNSQMNESLR 200

Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
             + +V              F+P+I    GY +  V++      +SF+E ++       I
Sbjct: 201 YVVSNVG----------PDGFSPIIPTKLGYEMFKVNSKNGVNKISFEEAQQKAIEAYTI 250

Query: 378 TKASEKVKEDYKRL 391
           ++  + ++   ++L
Sbjct: 251 SERKKAIENFNQKL 264


>gi|162448876|ref|YP_001611243.1| hypothetical protein sce0606 [Sorangium cellulosum 'So ce 56']
 gi|161159458|emb|CAN90763.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 296

 Score = 37.7 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
             F + A E+G   S   LG   +  + + +    +FSL+K G  +  +    G+ IA 
Sbjct: 238 TDF-KAAIEKGDKGSTDDLGYIPRGVL-EPAPEYELFSLSKGG-VSGPVDTPRGFWIAR 293


>gi|118352773|ref|XP_001009657.1| hypothetical protein TTHERM_00155290 [Tetrahymena thermophila]
 gi|89291424|gb|EAR89412.1| hypothetical protein TTHERM_00155290 [Tetrahymena thermophila
           SB210]
          Length = 1420

 Score = 37.7 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 110/355 (30%), Gaps = 17/355 (4%)

Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
           + +R   E                  +     L +   + +   +  E KR++       
Sbjct: 602 EQERLAKEAEEKRLAEEKAEQERLAKEAEEKRLAEEKAEQERLAKEAEEKRLAEEKRLAE 661

Query: 241 EKEKKIEISNDELQAEYEKNKEKYF-----SPEIR----TVEQLVFPNQKEADEAFQSLK 291
           EK ++  ++ +  +    + K +       + E R      EQ     + E     +   
Sbjct: 662 EKAEQERLAKEAEEKRLAEEKAEKERLAKEAEEKRLAEEKAEQERLAKEAEEKRLAEEKA 721

Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS--LAKKGDFTPVIHGSFGYV 349
           + ++  + AEE+  +         +KE        +      LAK+ +   +        
Sbjct: 722 EQERLAKEAEEKRLAEEKAEKERLAKEAEEKRLAEEKAEQERLAKEAEEKRLAEEK---- 777

Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
              ++  K       +E ++    + +  +     + + KRL E  A    + + +  ++
Sbjct: 778 --RLAEEKAEQERLAKEAEEKRLAEEKAEQERLAKEAEEKRLAEEKAEQERLAKEAEEKR 835

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
           +          A +  + +       +E+L      K     K       +   +  + +
Sbjct: 836 LAEEKAEKERLAKEAEEKRLAEEKAEQERLAKEAEEKRLAEEKRLAEEKAEQERLANEAE 895

Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
           E   A +++L E   + ++  K  +       KA Q  L    E K   +    L
Sbjct: 896 EKRLAEEKRLAEEKAEQERLAKEAEEKRLAEEKAEQERLAKEAEEKRLAEEKAEL 950


>gi|315649028|ref|ZP_07902122.1| hypothetical protein PVOR_27600 [Paenibacillus vortex V453]
 gi|315275709|gb|EFU39063.1| hypothetical protein PVOR_27600 [Paenibacillus vortex V453]
          Length = 256

 Score = 37.7 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/172 (9%), Positives = 52/172 (30%), Gaps = 16/172 (9%)

Query: 30  LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
           L D + S      VV   +  +  S ++ + K            +    +   +  D+ +
Sbjct: 71  LQDRIRSGPNPDWVVKDEKVNISLSDYVLAKKNR--------DLIYALNQVVEIPSDEAL 122

Query: 90  LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD----VF--VSRLAR 143
           L ++V+      + +  G+      V   +        + +    +     +   +R+  
Sbjct: 123 LQDMVTKQLTVNYAKQSGIVVTPEEVSEAVHFQKAALDEADPNDENHQLIRYMMENRIRI 182

Query: 144 EGINEKEY--IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
             +  +E+   D   +    +  +  F+  +     +         + +  D
Sbjct: 183 TSMTTEEFWNSDEVYEAYETSLYISKFLQSILTDESMKGMDSYQQLQEKLFD 234


>gi|254712135|ref|ZP_05173946.1| peptidyl-prolyl cis-trans isomerase C [Brucella ceti M644/93/1]
          Length = 85

 Score = 37.7 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 1/47 (2%)

Query: 327 DSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
           +        G+ T   I   FGY I  +        + F  V   IA
Sbjct: 1   ERALERMTPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 47


>gi|163787026|ref|ZP_02181473.1| hypothetical protein FBALC1_00767 [Flavobacteriales bacterium
           ALC-1]
 gi|159876914|gb|EDP70971.1| hypothetical protein FBALC1_00767 [Flavobacteriales bacterium
           ALC-1]
          Length = 261

 Score = 37.7 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 77/194 (39%), Gaps = 37/194 (19%)

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML---SRTDVVGMFVGG 171
           V  +          ++ F  ++F   ++++ I+ ++      +M+   SR  ++    G 
Sbjct: 99  VRQQFTNMYGKQRANHAF--ELFKR-ISKQNISMRQVCLQIKQMMDHASRLQLLHFLFGI 155

Query: 172 MRPSNLLLDQAKRFYFENRSVD-YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
            +    + +   R   +  ++  Y+ ++N+   +I          +++   + Y+  E  
Sbjct: 156 AKADGHVAEVEIR---QIYTMSGYLGISNKDYESIKAM-------FYDSTNNAYKVLEIS 205

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           +                +S+DE++  Y K  +KY       V  L   +Q+ A+E F+ +
Sbjct: 206 K---------------SVSDDEVKKAYRKMAKKYHPD---RVGHLGKEHQEGAEEKFRQV 247

Query: 291 KKGKKFIQLAEEQG 304
           +    +  + +E+G
Sbjct: 248 QAA--YELIQKERG 259


>gi|48762942|ref|NP_003950.1| huntingtin-interacting protein 1-related protein [Homo sapiens]
 gi|13431563|sp|O75146|HIP1R_HUMAN RecName: Full=Huntingtin-interacting protein 1-related protein;
           Short=HIP1-related protein; AltName:
           Full=Huntingtin-interacting protein 12; Short=HIP-12
 gi|168267484|dbj|BAG09798.1| huntingtin-interacting protein 1-related protein [synthetic
           construct]
          Length = 1068

 Score = 37.7 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 28/265 (10%), Positives = 78/265 (29%), Gaps = 24/265 (9%)

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
            +   +     +  +  + + +++   +A++   E  + L E      S  E +R  K+ 
Sbjct: 394 ELEEQRKQKQKALVD-NEQLRHELAQLRAAQLEGERSQGLREEAERKASATE-ARYNKLK 451

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
                LV    + ++          +QL      +++               +  Q+++ 
Sbjct: 452 EKHSELVHVHAELLR----KNADTAKQLTVTQQSQEEVARVKEQ--------LAFQVEQV 499

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
               + KLEE    ++K  + ++      ++A + +    +           L A     
Sbjct: 500 KRESELKLEEKSDQLEKLKRELEAKAGELARAQEALSHTEQSKSELSSRLDTLSAEKDAL 559

Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
           +   R    +       + +  +      +    E G             G + E++   
Sbjct: 560 SGAVRQREADLLAAQSLVRETEAALSREQQRSSQEQGELQ----------GRLAERESQE 609

Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSV 616
             L Q +  +    +         +
Sbjct: 610 QGLRQRLLDEQFAVLRGAAAEAAGI 634


>gi|307544935|ref|YP_003897414.1| trigger factor [Halomonas elongata DSM 2581]
 gi|307216959|emb|CBV42229.1| trigger factor [Halomonas elongata DSM 2581]
          Length = 451

 Score = 37.7 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 71/227 (31%), Gaps = 8/227 (3%)

Query: 26  LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
           L+ G    +            G  K    +F   ++ E      ++     + + +   +
Sbjct: 187 LVIGSGSFIPGFEEQLIGAKAGDDKELKVTFPEDYQAE------QLAGQEATFKVKVHTV 240

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
             + L  + +       ++D  L+     +   +AR       DN+    V  +      
Sbjct: 241 KTQALPEVDAEFVKQFGVDDGDLDKFREEISKNMAREAE-QAVDNRVKQQVLEALKKAND 299

Query: 146 IN-EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
           I   +  I   T  L R       +G     + L D+      ++R    ++L       
Sbjct: 300 IPVPQALIQQETDGLKRQAAQQFGLGEDFDVSQLPDELFAEQAKSRVQIGLLLAEVIKVN 359

Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
             D S+  +    E+    Y+ PE     Y+  D  + + K  I  +
Sbjct: 360 ELDASDDEIKAKVEELAQQYQEPEQVVEYYMGNDQMKDQVKSAILEE 406


>gi|154339866|ref|XP_001565890.1| translation initiation factor eIF2B subunit-like protein
           [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063208|emb|CAM45408.1| putative translation initiation factor eIF2B subunit-like protein
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 556

 Score = 37.7 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 46/152 (30%), Gaps = 18/152 (11%)

Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
           E+    VK   +  K  + +       V +  K G +  +       +     +I+R++ 
Sbjct: 24  EDARAAVKAQRELKKKRDALRK-----VQKKIKAGGSDANTSAATEEAAALVAEIDRLEA 78

Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
            +          + S P+       + +  + V            ++  +    +T+   
Sbjct: 79  LSGAPSAPSTVHIASAPLTTTPATAVASPAALVTVAADRGSRVKAKKSAEPAKEITEE-- 136

Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
                      +   S     +L+QR +D  +
Sbjct: 137 -----------ERAASAKRLHDLVQRAMDANR 157


>gi|83646167|ref|YP_434602.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
 gi|83634210|gb|ABC30177.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
          Length = 316

 Score = 37.7 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 17  FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
           F+ +  +   + G   A  +   +  V  V   ++              +++++    V+
Sbjct: 11  FVFLAALTGSLAGCGGAGEATDATQVVAKVNGSEISIHQLN-------AILAKQPAQGVS 63

Query: 77  SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
           S+ AR+     + LD LV          ++ L+     V  
Sbjct: 64  SDTARA-----RALDELVEQQVAYDKAVELKLDRSPDVVMA 99


>gi|119484526|ref|XP_001262042.1| LEA domain protein [Neosartorya fischeri NRRL 181]
 gi|119410198|gb|EAW20145.1| LEA domain protein [Neosartorya fischeri NRRL 181]
          Length = 1357

 Score = 37.3 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 98/287 (34%), Gaps = 17/287 (5%)

Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
           ++ +K K +    +++ ++ +   ++  +      E+ V   + +A+E  +  K      
Sbjct: 365 NLTDKAKDVPEQAEDVASQAKDTADETANQAKDKAEEAVDQAEDKAEETTEQAKNAVT-- 422

Query: 298 QLAEEQGKSLSDISL----GSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAH 352
            LA+  G  +S+  L       +   + +    D + +++  KG+         G +I  
Sbjct: 423 DLADLDGLPISEEGLIKNKDGQAIGKVAEGDPEDLVGYTVNDKGEIVD----EDGDLIGR 478

Query: 353 VSNIKPSFTVSFQEVKKDIANQM--RITKASEKVKEDYKRLEEFLALGTSMDEI-SRREK 409
           V  I P       +   +I  Q      +A +K +E  ++ ++ +     +D +      
Sbjct: 479 V-EILPQEAQDVTDKAGEIPEQADDAAEQAKDKAEETTEQAKKTVTDLADLDGLPVSEGG 537

Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
           +V      V     +   +++       +        D     +        +       
Sbjct: 538 VVKDKSGQVVAKIAEGDAEDLVGYALNNEGEVLDEDGDPIGRAEIVSQQAKDATDGFDDT 597

Query: 470 ESIPARDR-KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
           E +   D+   E+V     +  +  +  ++   KA  +  +  +E +
Sbjct: 598 EKLAPEDQGTQEDVAKQAVESVQ-QQDVDDTEEKAESVADDTKEEAE 643


>gi|302854265|ref|XP_002958642.1| hypothetical protein VOLCADRAFT_108227 [Volvox carteri f.
           nagariensis]
 gi|300256031|gb|EFJ40308.1| hypothetical protein VOLCADRAFT_108227 [Volvox carteri f.
           nagariensis]
          Length = 2285

 Score = 37.3 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 62/197 (31%), Gaps = 43/197 (21%)

Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN----- 189
             F +RLA  G    +        +    +  +      P+N   D A  F  +N     
Sbjct: 459 ARFGARLAAAG--PAQREAAL---IRVQQLAQVLTQASDPANF--DLAFNFVAQNVAELG 511

Query: 190 RSVDYIVLNN--RHVPAIADPSN------------AVLTQWFEKYKDNYRAPEYKRISYI 235
           RS+D     +    +    D  +            A +  W    K +Y  PEY+ ++ +
Sbjct: 512 RSIDIRAAEDWFDSLARRCDVDSQCGKAARVRALVAEIKCWGSSLKSDYDDPEYRILTLL 571

Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
           +                          ++ +  +R V +    ++  A    Q +++  +
Sbjct: 572 MLLAERPLDT---------------SVEHAAALVRQVREQQLADEAAAKA--QKVREEAE 614

Query: 296 FIQLAEEQGKSLSDISL 312
            + L   +  S SD  L
Sbjct: 615 LLALIRAEASSDSDEEL 631


>gi|302386740|ref|YP_003822562.1| trigger factor [Clostridium saccharolyticum WM1]
 gi|302197368|gb|ADL04939.1| trigger factor [Clostridium saccharolyticum WM1]
          Length = 428

 Score = 37.3 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 38/121 (31%), Gaps = 10/121 (8%)

Query: 53  FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
            + +    + +   + Q + F   +  +    +  + L  + +   L+  ++   + A  
Sbjct: 316 VNDYARRMQSQGLSLDQYMKFTGMTLESLKEQMKPQALKRIQTRLVLEAVVKAENITASD 375

Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
             V  EIA       +  K    +    L   G+          + L+  + V   V   
Sbjct: 376 EAVEKEIAGM----AETYKMEASLVRESLGENGL------QQMKEDLAVQEAVDFLVAEA 425

Query: 173 R 173
           +
Sbjct: 426 K 426


>gi|86357089|ref|YP_468981.1| peptidyl-prolyl cis-trans isomerase protein [Rhizobium etli CFN 42]
 gi|86281191|gb|ABC90254.1| probable peptidyl-prolyl cis-trans isomerase protein [Rhizobium
           etli CFN 42]
          Length = 314

 Score = 37.3 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 20/135 (14%)

Query: 26  LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
           L+ GL+    + SG   V  V    +       + +Q    +            A++   
Sbjct: 19  LLTGLAGPALAASGVQAV--VNGTAITSGDV--AKRQAFLRLQH------TKADAKTAT- 67

Query: 86  DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
                + L+      Q +  + +      V    AR        NK S +     L R G
Sbjct: 68  -----EQLIDETLKRQEVARVHMSVSQQDVDASFARFSA----GNKLSVEQMSQILDRAG 118

Query: 146 INEKEYIDHYTKMLS 160
           +    +       +S
Sbjct: 119 VGVDHFKGFIAVQMS 133


>gi|331090373|ref|ZP_08339254.1| hypothetical protein HMPREF1025_02837 [Lachnospiraceae bacterium
            3_1_46FAA]
 gi|330401120|gb|EGG80713.1| hypothetical protein HMPREF1025_02837 [Lachnospiraceae bacterium
            3_1_46FAA]
          Length = 1509

 Score = 37.3 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 121/339 (35%), Gaps = 30/339 (8%)

Query: 246  IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
            +E     L+A  E  K+    PE   V  +V     EA EA +++     F   A  QG+
Sbjct: 1184 VEADKKALEAAIEYAKDAKTKPEYEYVVPIVKQKLDEALEAAETV-----FANEAATQGE 1238

Query: 306  -SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
               ++  L    K+ +  +S       L +  D    I+        +      +F  + 
Sbjct: 1239 VDKAEADL----KKMLEYLSFTGDAKLLRELVDIAKEINTD-----IYTEQSANAFKEAL 1289

Query: 365  QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM-DEISRREKIVSIDLPLVDFAGK 423
            +E +  +AN+       +++   +K+L+E +     +  + S+  K+V      V+   +
Sbjct: 1290 EEAEAVLANE---NALQDELDAAHKKLQEAMDGLKVIPVDKSQLRKLVDDSRKYVEKLSE 1346

Query: 424  DVKGKEVAAIPYKEQLLFRVFGKDDPLSK-DHTVALPDGSYMWVQIKESIPARDR--KLE 480
                     +   E     +  +D    + D   A    +   +++   IP++++  +L 
Sbjct: 1347 YTAQSGQIFMGAFEAAENILEKQDATKEEVDQACANLRNAVFGLRL---IPSKEKLEELI 1403

Query: 481  EVLTDVKKDWKTVKTAE---EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
            +    +     T ++AE      +KA ++  +         D  + L  ++     +  +
Sbjct: 1404 QSAEQIDVKLYTEESAENFMSALAKAKEVFADEDATKAEVEDAEQALAKAIDELK-LKEV 1462

Query: 538  DNENKFFGYDGISQVF-SGPVEMVKCFPIENGLSYVVFK 575
              E+K      +     S P+       +  G  + V K
Sbjct: 1463 GKEDKEKNAGAVKTGDSSTPILFAVIAVLSAGTIFFVRK 1501


>gi|156063176|ref|XP_001597510.1| hypothetical protein SS1G_01704 [Sclerotinia sclerotiorum 1980]
 gi|154697040|gb|EDN96778.1| hypothetical protein SS1G_01704 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 642

 Score = 37.3 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 7/107 (6%)

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE--ISNDELQAEYEKNKEKYFSPE 268
           A L  W  + K+ +     +  +     +  ++ K        E +   + + E     +
Sbjct: 396 ADLKAWLAERKNRFPTKARREAAAEELRLKREQNKTNRFKREPETKVVKKDDGETKLEKQ 455

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
            R  E+L    +K   +  Q +  GK+     + +     D   G  
Sbjct: 456 QRKAEKLRLELEKAERKIKQEMSGGKR-----KRENGDEGDEDRGQV 497


>gi|294678213|ref|YP_003578828.1| chaperone SurA [Rhodobacter capsulatus SB 1003]
 gi|294477033|gb|ADE86421.1| chaperone SurA [Rhodobacter capsulatus SB 1003]
          Length = 418

 Score = 37.3 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 19/146 (13%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
           +  ++V    +           +     + +G   +        + K   + L+      
Sbjct: 34  APAITVNGLAISGYEIA-----QRARFMELLGATGD--------VRKMAEEALIDDRLQG 80

Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
              + +G+      V         F  + N  S + F+  LA  G+  + Y D  T  + 
Sbjct: 81  WKAQSLGISVSREAVTR---GMAEFAARAN-LSAEDFLKALAGAGVEAQTYRDFVTSGVI 136

Query: 161 RTDVVGMFVGG--MRPSNLLLDQAKR 184
             +VV    GG  ++ S+  +D+A  
Sbjct: 137 WREVVKTTYGGGRIQISDAEIDRALA 162


>gi|260891569|ref|ZP_05902832.1| hypothetical protein GCWU000323_02784 [Leptotrichia hofstadii
           F0254]
 gi|260858677|gb|EEX73177.1| putative peptidyl-prolyl cis-trans isomerase protein [Leptotrichia
           hofstadii F0254]
          Length = 84

 Score = 37.3 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 328 SIFSLAKKGDFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
                 K G     V++      +  V    P   + F+ VK+ I  Q+R  K   + + 
Sbjct: 3   EAIKDVKAGQVVNKVVNDGKSLYVVKVLERNPKGLIPFESVKEAIKTQLRNQKRQIEQQT 62

Query: 387 DYKRLEEFLALGTSMDEI 404
             K + +   L    + +
Sbjct: 63  YLKSISDEFKLSNMDEAL 80


>gi|559543|gb|AAB58346.1| p93 antigen [Borrelia garinii]
          Length = 693

 Score = 37.3 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 99/281 (35%), Gaps = 22/281 (7%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +    + G   S++ +D           V   +L+              +    E +K +
Sbjct: 188 LKKNILSGKVESDIDIDSLV-----TDKVVAALLSENEAGVNFARDITDIQG--ETHKAD 240

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
                  +I   L +VH+ +  I  + + L+ + EK  ++    E R   +     +K+ 
Sbjct: 241 -----QDKIDIELDNVHKSDSNITETIENLRDQLEKATDE----EHRKEIESQVDAKKKQ 291

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            E            Q   +  +   DI   +  ++   D+   +   +L K GD +    
Sbjct: 292 KEELDKKAIDLDKAQQKLDSSEDNLDIQRDTVREKIQEDIDEINKEKNLPKPGDVSSPKV 351

Query: 344 GSFGYVIAHVSNIKPS-FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
                +   + +++      S +  K++I  Q+ I K+ E++ +     +     G    
Sbjct: 352 DKQLQIKESLEDLQEQLKETSDENQKREIEKQIEIKKSDEELLKSKDP-KALDLNGDLNS 410

Query: 403 EISRREKIVSIDLPLVDFAGK----DVKGKEVAAIPYKEQL 439
           ++S +EKI   +  +V    K    D+   E    P  ++L
Sbjct: 411 KVSSKEKIKGKEGEIVKEESKASLADLNNDENLMRPEDQKL 451


>gi|257784915|ref|YP_003180132.1| hypothetical protein Apar_1113 [Atopobium parvulum DSM 20469]
 gi|257473422|gb|ACV51541.1| protein of unknown function DUF214 [Atopobium parvulum DSM 20469]
          Length = 1110

 Score = 37.3 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 61  KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
           +++     Q++  + +S   +    + +I  +    A + Q  ++  L A   +    +A
Sbjct: 306 QKQYDAGRQQLTTLRSSAEQKFAQAEAQIKAS---EAQIAQGTDE--LSAGEAQYQAGLA 360

Query: 121 RSPLFHGKDNKFS------HDVFVSRLAREGINEKEYIDHYTKM----LSRTDVVGMF-- 168
                     +         D +++ LA +GI      +   ++    L  T V  +   
Sbjct: 361 AFNAGQTTFTQQKSEFEAGRDAYLTGLAAQGITASTLEEAQQQLRALGLPTTQVDALLAT 420

Query: 169 VGGMRPSNLLLDQAKRFYFENR-SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN-YRA 226
              +  +   L   ++     R  +D      R   +    +   LT+      D  Y A
Sbjct: 421 QAQIVAAEAELATQQQALAAARGELDQRTAQLREAESQVAQARQNLTEARNATADQLYAA 480

Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
            E    S       +   +   S       YE  +      +   +E+ +   Q + DEA
Sbjct: 481 QEKLDASLSQLTAGQALLQNAESQT-----YEGRQS--LEDQRVEIEKQLADGQTKIDEA 533

Query: 287 FQSLKK 292
            + + +
Sbjct: 534 QKKIDE 539


>gi|126736394|ref|ZP_01752136.1| PPIC-type PPIASE domain [Roseobacter sp. CCS2]
 gi|126714215|gb|EBA11084.1| PPIC-type PPIASE domain [Roseobacter sp. CCS2]
          Length = 383

 Score = 37.3 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 20/144 (13%)

Query: 41  STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGATL 99
           + V++V  + +         +                E  R+ G L++   + L+     
Sbjct: 7   APVITVNDRVITQYELSQRIRLL--------------EVFRTPGDLNEAARNALIEDRLK 52

Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
            Q +   G+      +         F G+ N  S   F   LA++GI+     D     +
Sbjct: 53  QQELARFGVSVPEDALQQA---MEEFAGRAN-MSLPQFTRVLAQDGIDISTLRDFVEVGI 108

Query: 160 S-RTDVVGMFVGGMRPSNLLLDQA 182
             R  +   F   +  ++  +++A
Sbjct: 109 LWRDFIRSRFNRQITITDADVERA 132


>gi|326436941|gb|EGD82511.1| AGC/DMPK/GEK protein kinase [Salpingoeca sp. ATCC 50818]
          Length = 1740

 Score = 37.3 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 44/412 (10%), Positives = 126/412 (30%), Gaps = 42/412 (10%)

Query: 138 VSRLAREGINEKEYID-HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
                  G ++++ +D       + T +  +    +   +   +  +    E RSV  + 
Sbjct: 608 QQLKKSAGSSKEQVLDLEDKLAHAETQIRQLKRTKVELEDKYDNAKELLVLEQRSVKELT 667

Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY-ILFDVHEKEKKIEISNDELQA 255
                  +++  ++       E+     R  E +            +     IS  E   
Sbjct: 668 AKLHEAGSVSSSTSKEA----EQRTAELREAEQRIAQLQTKLREQNEAHTASISELE--- 720

Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
              +      +   R           +A    +++++ ++  Q  +E+  + +       
Sbjct: 721 ---QQLLGAQAAARRH----------DASAVQKAVEQAREQHQQEKERLLATN------- 760

Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA-HVSNIKPSFTVSFQEVKKDIANQ 374
                    L  ++  L ++             V+   +S ++     S +    ++   
Sbjct: 761 -------QRLQTTVAGLREEVQLAKARSDEQQTVLKQRISQLEADMKESSKLAHAELQRD 813

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
           +   +A  +V      ++E  A   ++    + ++     L         V   +   + 
Sbjct: 814 L--DRAVREVDASRTSVKELEASNDALRADMQTKEEDITALQAEVERLMVVTETQEQELE 871

Query: 435 YKEQLLFRVFGKDDPLSK--DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
                    +  +D L++         D      ++K ++ A  + L+E+    K   + 
Sbjct: 872 RLRSQSSAGYDVEDTLAELVQQVKEYEDAHAELDRLKAAVEAELQSLKELRLSPKTFLEK 931

Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
            +  +  + K  +L L   ++ ++     KN   + L   +  R + E +  
Sbjct: 932 HQRQQRRNQKVERLELRQLQQERDQEAQAKNQALAELNALR-ARQEAEAQEL 982


>gi|64420434|gb|AAY41417.1| P83/100 [Borrelia garinii]
 gi|115343097|gb|ABI94545.1| p83/100 [Borrelia garinii]
 gi|115343099|gb|ABI94546.1| p83/100 [Borrelia garinii]
          Length = 693

 Score = 37.3 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 99/281 (35%), Gaps = 22/281 (7%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +    + G   S++ +D           V   +L+              +    E +K +
Sbjct: 188 LKKNILSGKVESDIDIDSLV-----TDKVVAALLSENEAGVNFARDITDIQG--ETHKAD 240

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
                  +I   L +VH+ +  I  + + L+ + EK  ++    E R   +     +K+ 
Sbjct: 241 -----QDKIDIELDNVHKSDSNITETIENLRDQLEKATDE----EHRKDIESQVDAKKKQ 291

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            E            Q   +  +   DI   +  ++   D+   +   +L K GD +    
Sbjct: 292 KEELDKKAIDLDKAQQKLDSSEDNLDIQRDTVREKIQEDIDEINKEKNLPKPGDVSSPKV 351

Query: 344 GSFGYVIAHVSNIKPS-FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
                +   + +++      S +  K++I  Q+ I K+ E++ +     +     G    
Sbjct: 352 DKQLQIKESLEDLQEQLKETSDENQKREIEKQIEIKKSDEELLKSKDP-KALDLNGDLNS 410

Query: 403 EISRREKIVSIDLPLVDFAGK----DVKGKEVAAIPYKEQL 439
           ++S +EKI   +  +V    K    D+   E    P  ++L
Sbjct: 411 KVSSKEKIKGKEGEIVKEESKASLADLNNDENLMRPEDQKL 451


>gi|269215647|ref|ZP_06159501.1| trigger factor [Slackia exigua ATCC 700122]
 gi|269131134|gb|EEZ62209.1| trigger factor [Slackia exigua ATCC 700122]
          Length = 555

 Score = 37.3 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 15/115 (13%)

Query: 64  LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
                   G  V++ R     + K+  D +V    LD +    G+      V  E     
Sbjct: 357 FDQYLANNGLTVDAFRED---VKKQAKDTVVQNLALDAYARHAGISVTDDEVRDEFKN-- 411

Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
                  +   +   +   + G      +    + + R   +   V G + + + 
Sbjct: 412 -----SGQEDFEAMYADFKKHG-----RLHIVREGILRGKALEEIVNGAKVTEVE 456


>gi|55820539|ref|YP_138981.1| protease maturation protein [Streptococcus thermophilus LMG 18311]
 gi|55822430|ref|YP_140871.1| protease maturation protein precursor [Streptococcus thermophilus
           CNRZ1066]
 gi|55736524|gb|AAV60166.1| protease maturation protein precursor [Streptococcus thermophilus
           LMG 18311]
 gi|55738415|gb|AAV62056.1| protease maturation protein precursor [Streptococcus thermophilus
           CNRZ1066]
          Length = 371

 Score = 37.3 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 76/238 (31%), Gaps = 19/238 (7%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T +V M    +   ++          +   +   +         +  S   + + +++ 
Sbjct: 90  ETILVSMKGDTVTVGDVFNSLKGSNQTQQSVLSATLQKVLEKEYGSKVSKEDVDKAYKQA 149

Query: 221 KDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            + Y            +  E  R       + E         D  +A Y+   + Y    
Sbjct: 150 SEQYGDQFSQVLAAYGQTEESYRTQIRTQKLVEYAVNQAAQKDLTEANYKAAYDNYTPNT 209

Query: 269 IRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VS 324
              V  +   ++  AD+     K  G  F ++A++    ++  ++ S S+++  D    +
Sbjct: 210 EVQV--VSTTDKAVADKVASEAKAEGADFSKVAKDNSLKVTSKTVNSASQDFPTDVLTAA 267

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +++     +    G+  Y +    + K      ++  K D+   +   K ++
Sbjct: 268 FKQDANAVSDVVTVSNSSTGAATYYVVKTVS-KSEKNADWKNYKDDLTKVIINGKKAD 324


>gi|189234535|ref|XP_972911.2| PREDICTED: similar to futsch CG34387-PC [Tribolium castaneum]
          Length = 3113

 Score = 37.3 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 128/359 (35%), Gaps = 33/359 (9%)

Query: 196  VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-----EYKRISYILFDVHEKEKKIEISN 250
             L+ +  P +      VL    + ++     P     E       + ++ E   +  +  
Sbjct: 1619 KLDEKVEPTVTKSETDVLESTKQAHESTETKPKEVPEEKATEKNEILEIKENATQETLGK 1678

Query: 251  DELQAEYEKNKEKYFSP--EIRTVEQLVFPNQKEADEAFQSLKKGKK--FIQLAEEQGKS 306
            D+++ +  K ++    P  E   +E+     ++E  E  + +K      +   AE+    
Sbjct: 1679 DDIKNDITKIEDSKIKPNDEKDKLEESAKILKEEIKEVAEEIKDEADKAYDTAAEKIKTV 1738

Query: 307  LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI----AHVSNIKPSFTV 362
              D+       E +         F     GD    +      VI      + ++K S   
Sbjct: 1739 KKDVE---SKVENVVKEVEETKSFLGGIIGDIGRSLVNDATKVIDTIHKEIDDVKDSTKT 1795

Query: 363  SFQEVKKDIANQ----------MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
              +E+K+D+  +          ++ T A E V       +E   +  ++ E  +     +
Sbjct: 1796 KVEEMKEDLTTKKEAVEHVVKNIKETTAKETVGVLETAKDEAKVVEENLVEKKKELLEAA 1855

Query: 413  IDLP--LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
             DL   +V  AG  V+  +      KE +  ++    + L +    A+   S +  +I +
Sbjct: 1856 KDLEDAIVQNAGDVVEKSKTEIKETKESVEGKIQDVKETLIEQKATAIGVISDVEAKISK 1915

Query: 471  SIP----ARDRKLEEVLTDVKKDWKTV-KTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
             +        ++LE+V   V  + K V K AE+ +    Q + E   E K   D  KN+
Sbjct: 1916 DVETKVSEAKKELEDVKDKVSAEIKEVSKQAEQKTESVKQEIEEAKTETKELIDESKNV 1974


>gi|88658238|ref|YP_507033.1| SurA domain-containing protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88599695|gb|ABD45164.1| surA domain protein [Ehrlichia chaffeensis str. Arkansas]
          Length = 395

 Score = 37.3 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/141 (7%), Positives = 38/141 (26%), Gaps = 15/141 (10%)

Query: 25  FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
            +++ +  +    +    V  V  + +                           +     
Sbjct: 9   LVLFIILYSSNVFASVKIVAMVNDELISNLDLEKRIAINKFFY-----------KVEGNT 57

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
            ++  L+ L+  +   Q    + +      +   I +  +            +V     +
Sbjct: 58  AEEIALNALIDESIWRQEARKLKVTVTERDLLEAIKQFLVIKNL-GNIDLKSYVE---AQ 113

Query: 145 GINEKEYIDHYTKMLSRTDVV 165
           G++ K ++ H    L    ++
Sbjct: 114 GLDYKLFVQHMKSKLLWNKIL 134


>gi|68171990|ref|ZP_00545291.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998586|gb|EAM85338.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Sapulpa]
          Length = 395

 Score = 37.3 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/141 (7%), Positives = 38/141 (26%), Gaps = 15/141 (10%)

Query: 25  FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
            +++ +  +    +    V  V  + +                           +     
Sbjct: 9   LVLFIILYSSNVFASVKIVAMVNDELISNLDLEKRIAINKFFY-----------KVEGNT 57

Query: 85  LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
            ++  L+ L+  +   Q    + +      +   I +  +            +V     +
Sbjct: 58  AEEIALNALIDESIWRQEARKLKVTVTERDLLEAIKQFLVIKNL-GNIDLKSYVE---AQ 113

Query: 145 GINEKEYIDHYTKMLSRTDVV 165
           G++ K ++ H    L    ++
Sbjct: 114 GLDYKLFVQHMKSKLLWNKIL 134


>gi|187235675|gb|ACD02006.1| p83/100 [Borrelia garinii]
 gi|187235677|gb|ACD02007.1| p83/100 [Borrelia garinii]
          Length = 693

 Score = 37.3 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 99/281 (35%), Gaps = 22/281 (7%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +    + G   S++ +D           V   +L+              +    E +K +
Sbjct: 188 LKKNILSGKIESDIDIDSLV-----TDKVVAALLSENEAGVNFARDITDIQG--ETHKAD 240

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
                  +I   L +VH+ +  I  + + L+ + EK  ++    E R   +     +K+ 
Sbjct: 241 -----QDKIDIELDNVHKSDSNITETIENLRDQLEKATDE----EHRKDIESQVDAKKKQ 291

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            E            Q   +  +   DI   +  ++   D+   +   +L K GD +    
Sbjct: 292 KEELDKKAIDLDKAQQKLDSSEDNLDIQRDTVREKIQEDIDEINKEKNLPKPGDVSSPKV 351

Query: 344 GSFGYVIAHVSNIKPS-FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
                +   + +++      S +  K++I  Q+ I K+ E++ +     +     G    
Sbjct: 352 DKQLQIKESLEDLQEQLKETSDENQKREIEKQIEIKKSDEELLKSKDP-KALDLNGDLNS 410

Query: 403 EISRREKIVSIDLPLVDFAGK----DVKGKEVAAIPYKEQL 439
           ++S +EKI   +  +V    K    D+   E    P  ++L
Sbjct: 411 KVSSKEKIKGKEGEIVKEESKASLADLNNDENLMRPEDQKL 451


>gi|197120881|ref|YP_002132832.1| HNH endonuclease [Anaeromyxobacter sp. K]
 gi|196170730|gb|ACG71703.1| HNH endonuclease [Anaeromyxobacter sp. K]
          Length = 575

 Score = 37.3 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 3/114 (2%)

Query: 458 LPDGSYMWVQIKESIPARDR-KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
             D    WV+++  +P  +R  L+E L+  ++        E++ + A + + E    G  
Sbjct: 182 TGDEDGAWVELRTQLPPEERRVLDEALSVARELEPGASRIEQLEALAQEYLAE--HPGDP 239

Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS 570
             D  + LG                   G DG + +   P        +++GL+
Sbjct: 240 DADDARPLGPGFRARGPEPARRGAVASLGRDGWADLPDVPPVAAPDLSLDDGLT 293


>gi|143688|gb|AAA22825.1| signal peptide of unidentified ORF [Bacillus subtilis]
          Length = 61

 Score = 37.3 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
            LG F+KE   D +   + F L K G+ +  +  
Sbjct: 25  DLGWFAKEGQMDETFTKAAFKL-KTGEVSDPLES 57


>gi|436322|emb|CAA49310.1| p93 [Borrelia burgdorferi]
          Length = 693

 Score = 37.3 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 99/281 (35%), Gaps = 22/281 (7%)

Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
           +    + G   S++ +D           V   +L+              +    E +K +
Sbjct: 188 LKKNILSGKVESDIDIDSLV-----TDKVVAALLSENEAGVNFARDITDIQG--ETHKAD 240

Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
                  +I   L +VH+ +  I  + + L+ + EK  ++    E R   +     +K+ 
Sbjct: 241 -----QDKIDIELDNVHKSDSNITETIENLRDQLEKATDE----EHRKEIESQVDAKKKQ 291

Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
            E            Q   +  +   DI   +  ++   D+   +   +L K GD +    
Sbjct: 292 KEELDKKAIDLDKAQQKLDSSEDNLDIQRDTVREKIQEDIDEINKEKNLPKPGDVSSPKV 351

Query: 344 GSFGYVIAHVSNIKPS-FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
                +   + +++      S +  K++I  Q+ I K+ E++ +     +     G    
Sbjct: 352 DKQLQIKESLEDLQEQLKETSDENQKREIEKQIEIKKSDEELLKSKDP-KALDLNGDLNS 410

Query: 403 EISRREKIVSIDLPLVDFAGK----DVKGKEVAAIPYKEQL 439
           ++S +EKI   +  +V    K    D+   E    P  ++L
Sbjct: 411 KVSSKEKIKGKEGEIVKEESKASLADLNNDENLMRPEDQKL 451


>gi|119510047|ref|ZP_01629188.1| hypothetical protein N9414_20405 [Nodularia spumigena CCY9414]
 gi|119465371|gb|EAW46267.1| hypothetical protein N9414_20405 [Nodularia spumigena CCY9414]
          Length = 206

 Score = 37.3 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 55/138 (39%), Gaps = 10/138 (7%)

Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS-D 309
           +++  + +++  Y +        ++F ++  A E F ++++G+  F ++A          
Sbjct: 52  QVERFFYQHQLDYIAAITYE---IIFDDKDLALEMFYAVEEGEISFPEIARLYILEPELR 108

Query: 310 ISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
            + G   + +  D    +A ++F+   +      I    G  +  V  I        + +
Sbjct: 109 CTYGYQGRRHRKDFRPEIASAVFAATLQ-QILKPIVTPKGVYLIWVEEIIQPQLD--ESL 165

Query: 368 KKDIANQMRITKASEKVK 385
           ++ I  ++      ++++
Sbjct: 166 REKIITELFTDWLKQQIQ 183


>gi|322420781|ref|YP_004200004.1| hydroxymethylbutenyl pyrophosphate reductase [Geobacter sp. M18]
 gi|320127168|gb|ADW14728.1| hydroxymethylbutenyl pyrophosphate reductase [Geobacter sp. M18]
          Length = 282

 Score = 37.3 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 21/192 (10%)

Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
             D A +D     +  I +  Q++ R+       S +    + +G  + ++         
Sbjct: 22  AFDAADRDGDTYTLGPIIHSPQVVQRLEEM-GVKSVEDVSEIENGGTVIIRSHGVAA--- 77

Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL------- 529
              EE+   V+   + V        KA + V   SKEG +   +G  +   +        
Sbjct: 78  ---EELEAAVRASLEVVDATCPFVKKAQEHVATLSKEGYDVVVVGDAVHPEVQGIVSYAT 134

Query: 530 -------TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
                  +   + R+    K       +Q F    E+V       G + V   + ++   
Sbjct: 135 GRVYVVSSGRDVERLPRMAKMGVVAQTTQSFEHLNEVVAACLARGGETRVYNTICDATAV 194

Query: 583 PVQEKDKFISYL 594
             +E  K    +
Sbjct: 195 RQEETKKLAGEV 206


>gi|161829987|ref|YP_001597450.1| IcmE protein [Coxiella burnetii RSA 331]
 gi|161761854|gb|ABX77496.1| IcmE protein [Coxiella burnetii RSA 331]
          Length = 1034

 Score = 37.3 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 72/514 (14%), Positives = 141/514 (27%), Gaps = 69/514 (13%)

Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPSNLLLDQAKRFYFENRSVDYI 195
           ++ L   G    E  D      +   +         ++ +     Q K   F  + +   
Sbjct: 284 LAALKAAGFTAAELKD---AGFTAAQLKAAGFSAKDLKATGFTAAQLKAAGFSAKDLKSA 340

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS-----YILFDVHEKEKKIEISN 250
             +   +   A  SNA L       KD   +PE  + +         +  +  +   IS 
Sbjct: 341 GFSAVALK-QAGFSNADL-------KDAGFSPEQIQAADKVAKVCDVEALKAARAQGISA 392

Query: 251 DELQA----EYEKNKEKYFSPEIRTV----EQL-----VFPNQKEADEAFQSLKKGKKFI 297
            EL+             + + E++       QL        + K A  +   LK      
Sbjct: 393 KELKEKGCGLAALKAAGFTAAELKDAGFTAAQLKGAGFSAADLKAAGFSAAQLKAAGFSA 452

Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSL-ADSIFSLAKKGDFT-----PVIHGSFGYVIA 351
           +  +  G S  D++   F+   + D    AD + +             P   G       
Sbjct: 453 KALKAAGFSAHDLATAGFNASQLKDAGFTADDLKAAGFSDQALSAAGFPPSSGDCSVKAL 512

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
             + +        +E    +A        + ++K       +  A G S  ++ +     
Sbjct: 513 KKARMAGISATELKEKGCGLAALKAAGFTAAELKNAGFTAAQLKAAGFSAKDL-KDAGFS 571

Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
           + +L    F  KD+K    +A   K         KD         AL D  +        
Sbjct: 572 AAELKAAGFGAKDLKDAGYSAQDLKAAGFSAAQLKDAGFDAQ---ALKDAGFSA------ 622

Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI-GKNLGASLLT 530
                            D K    + E    A     +    G +   +      AS L 
Sbjct: 623 ----------------ADLKNAGFSAEALKNAGFSAAQLKAAGFSAGALKAAGFSASQLK 666

Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
               +     +  F    +      P E+      +  L    +    +   P       
Sbjct: 667 AAGFDAKALRDAGFSAGELKAAGFSPEELRHAGYSKGDLLRAGYTAEQAGYPPSSPPGTE 726

Query: 591 ISYLTQM--MNKDLLDSVIAYL---KSQYSVTVH 619
           +S   Q   ++ D   + ++ L   +S    +++
Sbjct: 727 VSQSAQRPPLSADNSAASVSGLNNSQSSAMPSIN 760


>gi|312623383|ref|YP_004024996.1| hypothetical protein Calkro_2356 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203850|gb|ADQ47177.1| hypothetical protein Calkro_2356 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 237

 Score = 37.3 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/198 (9%), Positives = 52/198 (26%), Gaps = 34/198 (17%)

Query: 37  VSGSSTVVSVGRQKVPFSSFINS--WKQELGMISQKIGFVVNSERARSV--GLDKKILDN 92
            + S  +  V    +       +  +++     + K+G +       +      K++L+ 
Sbjct: 48  SNNSDIIAKVDGIPIYKKDLEIAELYEKVRFDNTVKLGAIAKQNTLVTPYQKTKKELLNE 107

Query: 93  LVSGATLDQFIEDIGLEADHGR-------VWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
           L+    L +  +  G              V   I        K +  +       L    
Sbjct: 108 LIERKALMESAKKEGYLVSKEEAEAYFNNVKKTIDDVLNGKIKGDIENAKQAKEVL---- 163

Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
                Y    ++      V+  +   +  S  L  +   +  E+                
Sbjct: 164 ---DMYKTQLSENEFNEKVISAYQEILTISKYLNAKVDEYVKEH---------------- 204

Query: 206 ADPSNAVLTQWFEKYKDN 223
            + +   + ++   +K  
Sbjct: 205 PNATPDEVKKFINDFKKK 222


>gi|312864307|ref|ZP_07724541.1| putative foldase protein PrsA [Streptococcus vestibularis F0396]
 gi|322517304|ref|ZP_08070180.1| peptidylprolyl isomerase [Streptococcus vestibularis ATCC 49124]
 gi|311100308|gb|EFQ58517.1| putative foldase protein PrsA [Streptococcus vestibularis F0396]
 gi|322124087|gb|EFX95637.1| peptidylprolyl isomerase [Streptococcus vestibularis ATCC 49124]
          Length = 380

 Score = 37.3 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 76/238 (31%), Gaps = 19/238 (7%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T +V M    +   ++          +   +   +         +  S   + + ++K 
Sbjct: 99  ETTLVSMKGDTVTVGDVFDSLKGSNQTQQSVLSATLQKALEKEYGSKVSKEDVDKAYKKS 158

Query: 221 KDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            + Y            +  E  R       + E         D  +A Y+   + Y    
Sbjct: 159 LEQYGDQFSQVLAAYGQTEESYRTQIRTQKLVEYAVNQAAQKDLTEANYKAAYDNYTPNT 218

Query: 269 IRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VS 324
              V  +   ++  AD+     K  G  F Q+A++    ++  ++ S S+++  D    +
Sbjct: 219 EVQV--VSTTDKAVADKVDSEAKAEGADFSQVAKDNSLEVTSKTVNSASQDFPTDVLTAA 276

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +++     +    G+  Y I    + K      ++  K D+   +   K ++
Sbjct: 277 FKQDANAVSDVVTVSNSSTGAATYYIVKTVS-KSEKNADWKNYKDDLTKVIINGKKAD 333


>gi|282917016|ref|ZP_06324774.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            subsp. aureus D139]
 gi|282319503|gb|EFB49855.1| cell-wall-anchored protein SasC (LPXTG motif) [Staphylococcus aureus
            subsp. aureus D139]
          Length = 2182

 Score = 37.3 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 91/283 (32%), Gaps = 28/283 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       V+  +V +++A  +           + +A +   +    ++   +    ++ 
Sbjct: 1139 NATTEEKQVALNQVDQELATAINNINQADTNGEVDQAQQLGTKAINAIQPNIVKKPAALA 1198

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF---GKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           +  + +  T A  
Sbjct: 1199 QINQHYNAKLAEINATPDATDDEKNAAINILNQDRQQAIESVKQANTNAEVDQAATTAEN 1258

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +   +      
Sbjct: 1259 NIDAVLVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQLKDQ------ 1312

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
                   +    NQ N+ +++        I+ + +   E+V        +   V +    
Sbjct: 1313 -------AFNQINQ-NQTNDQADTTTNQAINAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1364

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
                +   D       Q + K+   ++ A  ++Q +  V+   
Sbjct: 1365 IDNSLDSTDNEKEVALQALAKEKEKALAAIDQAQTNSQVNQAA 1407


>gi|119179081|ref|XP_001241164.1| hypothetical protein CIMG_08327 [Coccidioides immitis RS]
          Length = 461

 Score = 37.3 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 54/159 (33%), Gaps = 10/159 (6%)

Query: 140 RLAREGINEKEYIDH--YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
            L +    ++ + D     ++  R  V+G+     R       +A   + E R      L
Sbjct: 133 TLRKNRFRKQTFEDIGVEREVDIRKGVMGILNR--REEEFDSKRAWDDFLEQREEIIANL 190

Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYR---APEYKRISYILFDVHEKEKKIEISNDELQ 254
                      + A L ++  +   + R     E +  +++L     +++         +
Sbjct: 191 ---VYGTDVAKTEAQLAEYAAQNAASIRHNKTLESQESAFLLQQQTLEQEAFRQRRQAAR 247

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
            +Y++ +    +     + +L     ++A+   +  K G
Sbjct: 248 QDYDEARRAKLAGRQEIITRLATGTHEDAEAIAREAKHG 286


>gi|121705166|ref|XP_001270846.1| cohesin complex subunit  (Psm1), putative [Aspergillus clavatus NRRL
            1]
 gi|119398992|gb|EAW09420.1| cohesin complex subunit (Psm1), putative [Aspergillus clavatus NRRL
            1]
          Length = 1260

 Score = 37.3 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 104/359 (28%), Gaps = 57/359 (15%)

Query: 94   VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
            +   +L +      LE         I     F  +  + + D  ++ L  +   ++  I+
Sbjct: 827  IQQGSLQEEAAQKKLEFTTQ--KSRIENQLSFEKQRLQATKDR-IASLEAQHQRDQSLIE 883

Query: 154  HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR-----------FYFENRSVDYIVLNNRHV 202
               +   +  +            +L +Q ++              + R +     +   +
Sbjct: 884  ELKEE--QEQIRNQLDEYSAELEVLGEQLEKQKEAYAQSAENLAQQRRELQKRSKDVEGM 941

Query: 203  PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
                  S A + +         R  + + IS  L +      ++ I +            
Sbjct: 942  LKDVSASEAEIQRNSSSRYALLRRCKLEDISIPLTEDSRPLDQLPIDD------------ 989

Query: 263  KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI-- 320
                        +V     +A +  + +  G       ++ G  +   SLG   KE    
Sbjct: 990  ------------IVQAADPDAMDVDEDIAGGGD---AVQDYGIEVDFDSLGETLKEDADE 1034

Query: 321  -PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
              +  L D + +L  + D     +      +  V N   S    F E +K         +
Sbjct: 1035 KVEEELLDRVNTLKNELDKMAP-NTRAMERLESVENKLRSTEKDFDEARKQAR------R 1087

Query: 380  ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
            A +  +E  ++  +      S       E+I  I   L   A   + G+    I   ++
Sbjct: 1088 AKDDFEEVMRKRSDLFNKAFSHIS----EQIGPIYRELTRSANYPLGGQAYLDIEDSDE 1142


>gi|256379530|ref|YP_003103190.1| YhgE/Pip C-terminal domain protein [Actinosynnema mirum DSM 43827]
 gi|255923833|gb|ACU39344.1| YhgE/Pip C-terminal domain protein [Actinosynnema mirum DSM 43827]
          Length = 631

 Score = 37.3 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 89/304 (29%), Gaps = 20/304 (6%)

Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS----LA 333
             +    E    L +G KF       G +   +  G ++         + ++ S      
Sbjct: 69  ATENAGREVADELLRGHKFDWREVGGGDAERGVRDGEYAFALTLPEDFSQALTSSGRFTP 128

Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV--KEDYKRL 391
           ++G      + +  Y    + +   +  VS  EV++ ++ ++    A   +      +  
Sbjct: 129 RQGVLVLTTNDANNY----LGSTIANQVVS--EVRRSVSAKVGTQAADRFLLGFSTVREK 182

Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
            E  A G +     +R  +                  E+A+   + +       +     
Sbjct: 183 TEQAAKGATELADGQRTALDGARKLADGTGTLANGAAELASGTGQLRSSTADLPRSAQQL 242

Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA--NQLVLE 509
            D    + DG+    +  E   A  R L   L  V  D         +  +   ++ V +
Sbjct: 243 ADGAKQVSDGAEQAARTAEQYAAEARTLAADLDKVDADLVA-----RLRERGFTDEQVQQ 297

Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-SGPVEMVKCFPIENG 568
                   R    +    +  T    R          DG +++  S P        +++G
Sbjct: 298 VQTALGTVRAPAADANTKVQDTAGQLRTLANGAKKVSDGAAKLASSTPSLTGAIGKLDDG 357

Query: 569 LSYV 572
              +
Sbjct: 358 AKQL 361


>gi|313201571|ref|YP_004040229.1| EpsD family peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           MP688]
 gi|312440887|gb|ADQ84993.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Methylovorus sp.
           MP688]
          Length = 276

 Score = 37.3 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 70/248 (28%), Gaps = 48/248 (19%)

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLL---LDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
           +D   K L    +    V  +     +    D         R +         V +   P
Sbjct: 30  VDQVRKQLLDKLIDQQIVLNVALEQKIDRSADVVASIEAAKREIIARAYLTNLVTSRIKP 89

Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
           +   + Q+F+ + + +   +   +  I      +                          
Sbjct: 90  TPQQVKQYFDTHPELFSERKVYNLQDISLPAETEISP----------------------- 126

Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
                                +   K    +AE       ++  G+ S     +    D+
Sbjct: 127 ----------------ALTDKVNSSKSLQDIAE--WLKTQNVKFGASSYSKPAEQMPLDA 168

Query: 329 IFSLA--KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
           + +L   + G  + ++     + I  +     S  +S+++ K  I   +  ++  + +K 
Sbjct: 169 LSTLKSMRDGSVS-LLTMDGSHHIVRLVAAV-SAPMSYEQAKPMIQMYLVNSEGQKLIKS 226

Query: 387 DYKRLEEF 394
           +  RL+E 
Sbjct: 227 EITRLKEK 234


>gi|153871264|ref|ZP_02000481.1| Protein of unknown function DUF323 [Beggiatoa sp. PS]
 gi|152072269|gb|EDN69518.1| Protein of unknown function DUF323 [Beggiatoa sp. PS]
          Length = 524

 Score = 37.3 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 65/174 (37%), Gaps = 9/174 (5%)

Query: 367 VKKDIANQMRITKA-SEKVKEDYKRLEEFLALGTSMDEISRREKIVSI--DLPLVDFAGK 423
           +++ I + +   KA ++K+   Y +L+       + +  S+  +   +   +  +  A  
Sbjct: 1   MRETIVSSITQAKAEAQKLIRRYNQLQAEAKTADTNEAASKAAEADKLVSQISALQLAIT 60

Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV- 482
            ++ ++      K Q+      K    +K   V+  +      + K+ + AR  +LEE  
Sbjct: 61  KLQRQDREDSTQKSQVPKTSAKKPIAPNKGKKVSTEEIKRAVSE-KKVLEARMNRLEEAQ 119

Query: 483 ---LTDVKKDWKTVKTAEEVSSKANQLVLEYSKE-GKNFRDIGKNLGASLLTTN 532
                 + +  +       +  KA Q V   +KE G N   + + L   +    
Sbjct: 120 KKTRAQIDQLTRAKDDLTRLKRKAEQSVATIAKERGSNDEKLQQELAKRIKKKE 173


>gi|320167226|gb|EFW44125.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1013

 Score = 37.3 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 107/335 (31%), Gaps = 13/335 (3%)

Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
             L   FE+      A    +      +    E+   I   E  +  EK++ +  + +I 
Sbjct: 420 KDLRDLFEQNTTLKTASAILKDRLEQAEKQLAEQVASIHQLETASAQEKSRAEDATHQIE 479

Query: 271 TVEQLVFPNQKEADEAFQSLK-------KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
            + + +     +A+ A   LK       K +  +  A+ +     D + G+ +K      
Sbjct: 480 ELSRKLANTHSKAELAENRLKQLGEQQVKTESELVDAQNKRMEAEDKAAGAATKLAESQC 539

Query: 324 SLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
            L ++   LA        +         A  S I  + TV+ +  +     +    KA+ 
Sbjct: 540 RLKEAESKLADASTTADELAETQRKLKEAE-SKIADASTVADELAESQRRLKEAEDKAAA 598

Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
           ++ E  ++L E  +       ++         L   +        +    +   E  L  
Sbjct: 599 ELAETQRKLNEAESKIADATTVADELAETQRKLKEAEDKAAAELAETQRKLNEAESRLSD 658

Query: 443 VFGKDDPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
                D L++         S +     + + +    RKL+E  + +     + +  ++ +
Sbjct: 659 ASTTADELAESQRKLKEAESKIADASTVADELAESQRKLKEAESKIADA--STEAEDKAA 716

Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
           ++  +   + ++      D          T  ++ 
Sbjct: 717 AELAETQRKLNEAESKIADASTTADELAETQRKLK 751


>gi|228477887|ref|ZP_04062501.1| protease maturation protein [Streptococcus salivarius SK126]
 gi|228250377|gb|EEK09617.1| protease maturation protein [Streptococcus salivarius SK126]
          Length = 380

 Score = 37.3 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 76/238 (31%), Gaps = 19/238 (7%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T +V M    +   ++          +   +   +         +  S   + + +++ 
Sbjct: 99  ETTLVSMKGDTVTVGDVFDSLKGSSQTQQSVLSATLQKALEKEYGSKVSKEDVDKAYKQA 158

Query: 221 KDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            + Y            +  E  R       + E         D  +A Y+   + Y    
Sbjct: 159 SEQYGDQFSQVLAAYGQTEESYRTQIRTQKLVEYAVNQAAQKDLTEANYKAAYDNYTPNT 218

Query: 269 IRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VS 324
              V  +   ++  AD+     K  G  F Q+A++    ++  ++ S S+++  D    +
Sbjct: 219 EVQV--VSTTDKAVADKVDSEAKAEGADFSQVAKDNSLEVTSKTVNSASQDFPTDVLTAA 276

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +++     +    G+  Y I    + K      ++  K D+   +   K ++
Sbjct: 277 FKQDANAVSDVVTVSNSSTGAATYYIVKTVS-KSEKNADWKNYKDDLTKVIINGKKAD 333


>gi|62183542|gb|AAX73213.1| cell surface antigen Sca2 [Rickettsia africae]
          Length = 1466

 Score = 37.3 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 69/204 (33%), Gaps = 19/204 (9%)

Query: 54   SSFINSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
               + S+KQ L     Q    V++ E+ +S    K++LD     +   Q ++   L++  
Sbjct: 882  QEKLQSFKQVLNQEKLQSFKQVLDQEQLQSF---KQVLDQKQLQS-FKQELDQEQLQSFK 937

Query: 113  GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE------KEYIDHYTKMLSRTDVVG 166
              +  E  +   F  + ++     F   L +E +        +E +  + + L +  +  
Sbjct: 938  QELDQE--QLQSFKQELDQEQLQSFKQELDQEQLQSFKQVLDQEQLQSFKQELDQEQLQS 995

Query: 167  MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
                      L  +Q + F  E            +     + S    TQ  +  K + ++
Sbjct: 996  ------FKQELDQEQLQSFKQELDQEQLQSFKQENEATNDESSTKDDTQPEDSNKKSEQS 1049

Query: 227  PEYKRISYILFDVHEKEKKIEISN 250
                 +S  L   ++ +      +
Sbjct: 1050 DSKTALSPRLLSSNDSKNDKSSDD 1073


>gi|300856330|ref|YP_003781314.1| phage-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300436445|gb|ADK16212.1| phage-related protein [Clostridium ljungdahlii DSM 13528]
          Length = 661

 Score = 37.3 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 70/192 (36%), Gaps = 24/192 (12%)

Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
            +W+E+   ++  PE  RI  +     + E  +E    EL+  +++NK K      R   
Sbjct: 342 KEWYEENNKSFELPEDARICPLCKRPFDDED-VEKHKQELEENFKQNKSKVLKEITRKGS 400

Query: 274 QLVFPNQKEADEAFQS-------LKKGKKF----IQLAEEQGKSLSDISLGSFSKEYIPD 322
                 +K   +  ++       LKK   F     +L  +     + + L S +KEY   
Sbjct: 401 NKADEIEKHKKKISENESELEGLLKKLDDFNNKKDELQSKFDNFKAVVDLNS-NKEYQNT 459

Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
           +   +++     + + +  I            +I      + Q   + I   ++  + ++
Sbjct: 460 LKQIEAL-----ETELSRPIEKD------SQVDILKEKKQNLQMELEHINQDLKYEEIND 508

Query: 383 KVKEDYKRLEEF 394
           +     K L++ 
Sbjct: 509 RTNARIKELQDK 520


>gi|188582683|ref|YP_001926128.1| Sel1 domain protein repeat-containing protein [Methylobacterium
           populi BJ001]
 gi|179346181|gb|ACB81593.1| Sel1 domain protein repeat-containing protein [Methylobacterium
           populi BJ001]
          Length = 1088

 Score = 37.3 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 89/270 (32%), Gaps = 25/270 (9%)

Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM-DEISRREKIVSIDLPLVDFAG 422
            ++    +A+ +R  +   +V      +E        + ++++                 
Sbjct: 264 LEQTMHAVASDLRRARDPREVAAIAAPIELMRVQVERLAEDVADNVHARVAGEVERLAFK 323

Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
            D       + P  +  L  VF             L +   +   +    P R + L + 
Sbjct: 324 VDEVLSGALSGPADQSALESVFR-----------ELDEIRRLVAALAG--PERIQSLAQG 370

Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT--NQINRMDNE 540
           +  +      ++  E+    A + +LE  +         + L  +LL       +R+D  
Sbjct: 371 VQAISAQIAQLQRDEDAGLAAIKPLLEEIRGELKAPAAAQELPGALLGRFEALADRLDRA 430

Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYV---VFKVTNSKVGPVQEKDKFISYLTQM 597
                 D I ++ +   ++ +     +GL  +   V  +  S++   +  D  ++ L + 
Sbjct: 431 EAGSVGDLIERLEAVAEKVDRVSAGGSGLDALERHVLAL-ASRLDAPRTADPAVARLERS 489

Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
           M   L    +A L+    +   D  ++R +
Sbjct: 490 MGDLLAQ--VAALRDGAGL---DAAVERAV 514


>gi|291453630|ref|ZP_06593020.1| lipoprotein [Streptomyces albus J1074]
 gi|291356579|gb|EFE83481.1| lipoprotein [Streptomyces albus J1074]
          Length = 225

 Score = 37.3 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 12/139 (8%)

Query: 56  FINSWKQELGMISQKIGFVVNSERARSVGL---------DKKILDNLVSGATLDQFIEDI 106
           + ++  Q+     Q      ++  A+   +         D+  L  ++S   + +  ++ 
Sbjct: 31  YADALDQQCSAARQAELQQRDASAAQGEKVVEGRETCAPDRSTLAGMISERVVKEAADEA 90

Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
           G+      +     R      +    +  +  + L   GI      DH    L    +  
Sbjct: 91  GISPTRKELRE---RRAQLQEQTGGTAEQLEEAYLRTYGIPAARIDDHLAYQLRLDGLRQ 147

Query: 167 MFVGGMRPSNLLLDQAKRF 185
            +  G  P        K  
Sbjct: 148 KYAPGTSPEQADTQVRKEL 166


>gi|271969773|ref|YP_003343969.1| hypothetical protein Sros_8584 [Streptosporangium roseum DSM 43021]
 gi|270512948|gb|ACZ91226.1| hypothetical protein Sros_8584 [Streptosporangium roseum DSM 43021]
          Length = 206

 Score = 37.3 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 13/151 (8%)

Query: 36  SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLV 94
           S + +     VG  ++  +    + ++    +++     V+    +  G L + +L  L 
Sbjct: 23  SPTQAGAAAVVGGDRISSNELDGNVREFEAALAK---ANVSVADLKFPGSLPQVVLFQLA 79

Query: 95  SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
           +     +  E  G+      +   IA +        +  H+     L +  +   +  D 
Sbjct: 80  TAKQYTKVAESKGVTVTDAEIDQVIAAT------GGQAQHE--QQMLQQA-VAPSQSRDF 130

Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
               L  T ++  + GG   + L   Q +  
Sbjct: 131 TRAKLLMTKLMAKYGGGSDQAALQRGQEQAI 161


>gi|296127503|ref|YP_003634755.1| GTP-binding protein Obg/CgtA [Brachyspira murdochii DSM 12563]
 gi|296019319|gb|ADG72556.1| GTP-binding protein Obg/CgtA [Brachyspira murdochii DSM 12563]
          Length = 680

 Score = 37.3 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKD-NYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
           +L    +          + + ++  K+ +Y  PE   +S    +           +  + 
Sbjct: 285 MLEEDEIKEKVKSIEKAVKKEYKNNKETHYEEPEIFALSVFSLEGDML-------DKVIN 337

Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
           A Y+ N+E+Y +   +T E L+    K+  +    
Sbjct: 338 AFYKANEERYDNTAKQTKEPLLLNQNKDKSKLKTK 372


>gi|282866310|ref|ZP_06275356.1| hypothetical protein SACTEDRAFT_5901 [Streptomyces sp. ACTE]
 gi|282558896|gb|EFB64452.1| hypothetical protein SACTEDRAFT_5901 [Streptomyces sp. ACTE]
          Length = 218

 Score = 37.3 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 6/135 (4%)

Query: 42  TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
               VG +++  S+             Q+          +S  L +  L +L+ G  LD+
Sbjct: 33  AAAVVGGERIEVSAVQARTADVRSA--QEASEQSEQLVKKSGQLTRAKLHSLIFGRVLDR 90

Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
             +D G+      V  ++  +             +    L +  +   E  +   K +  
Sbjct: 91  AAKDAGVSVSRKEV-QQVRTAAAAQSGG---DEGLRTVMLEQRWVAPGEIEEDLRKEVQL 146

Query: 162 TDVVGMFVGGMRPSN 176
             +       ++   
Sbjct: 147 PKLAQALGADLQSPA 161


>gi|312277862|gb|ADQ62519.1| Protease maturation protein [Streptococcus thermophilus ND03]
          Length = 380

 Score = 36.9 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 76/238 (31%), Gaps = 19/238 (7%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T +V M    +   ++          +   +   +         +  S   + + +++ 
Sbjct: 99  ETILVSMKGDTVTVGDVFNSLKGSNQTQQSVLSATLQKVLEKEYGSKVSKEDVDKAYKQA 158

Query: 221 KDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            + Y            +  E  R       + E         D  +A Y+   + Y    
Sbjct: 159 SEQYGDQFSQVLAAYGQTEESYRTQIRTQKLVEYAVNQAAQKDLTEANYKAAYDNYTPNT 218

Query: 269 IRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VS 324
              V  +   ++  AD+     K  G  F ++A++    ++  ++ S S+++  D    +
Sbjct: 219 EVQV--VSTTDKAVADKVASEAKAEGADFSKVAKDNSLKVTSKTVNSASQDFPTDVLTAA 276

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +++     +    G+  Y +    + K      ++  K D+   +   K ++
Sbjct: 277 FKQDANAVSDVVTVSNSSTGAATYYVVKTVS-KSEKNADWKNYKDDLTKVIINGKKAD 333


>gi|299139204|ref|ZP_07032380.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
 gi|298598884|gb|EFI55046.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
          Length = 262

 Score = 36.9 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 55/216 (25%), Gaps = 58/216 (26%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
              V  V    +  S      + ++            +  A +     + ++ L++ + +
Sbjct: 62  DRVVAIVNGDLILDSDVNEETRLQVFQ-------PYRNPNADTS--RDRAIERLINRSLI 112

Query: 100 DQFIEDIGLE----ADHGRVWGEI----ARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
            Q    + L+        +V  ++       P      N  + D +   LA  G  E   
Sbjct: 113 LQQ---LKLQPEDPITDDQVRKDLDNLRKNIPACK-PYNCETPDGWNKFLATNGFTEATL 168

Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
           I  +   +                     +  RF  E                       
Sbjct: 169 ISRWRSRM---------------------EVLRFIEER------------FRLGIKVKPE 195

Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
            +  +++K       PEY R       +     +I+
Sbjct: 196 EIKSYYDKT----LLPEYARQKATPPSLDSISSRIQ 227


>gi|283769608|ref|ZP_06342504.1| putative lipoprotein [Bulleidia extructa W1219]
 gi|283103876|gb|EFC05262.1| putative lipoprotein [Bulleidia extructa W1219]
          Length = 290

 Score = 36.9 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 12/136 (8%)

Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYR-----APEYKRISYILFDVHEKEKKIEISNDEL 253
           N  +   A  + A   + +     +Y      + E    +Y++      ++  ++S   +
Sbjct: 76  NEDMKKKAKETLANYKKLYGDSFASYLKRMNLSEEQYMNNYLVPS----QQAQKLSEKYI 131

Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
            A Y    +KY          L FP  K+A EA   +KKG    + A+    S   I   
Sbjct: 132 NAHYATIVKKYQP---VQATVLSFPTAKDAREALAEIKKGTAVEKAAKAHKASNKFIKQI 188

Query: 314 SFSKEYIPDVSLADSI 329
                   D  + +++
Sbjct: 189 FTLDSKQIDSLVRNAV 204


>gi|124265931|ref|YP_001019935.1| hypothetical protein Mpe_A0738 [Methylibium petroleiphilum PM1]
 gi|124258706|gb|ABM93700.1| hypothetical protein Mpe_A0738 [Methylibium petroleiphilum PM1]
          Length = 330

 Score = 36.9 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 69/253 (27%), Gaps = 45/253 (17%)

Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL--LLDQAKRFYFENRSVDYIVLNN 199
            +  +  ++        L R   + + V     + +       +   F  R V      +
Sbjct: 61  RQPDLRPEQVEAASRAALERLVQLELAVQKANEAKIDREPQVVQALDFARREVLARAYID 120

Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
           R     A P+   + +++E+    ++                            +  Y  
Sbjct: 121 RLAETAAKPTAQEIERFYEERPALFKT---------------------------RRIYSV 153

Query: 260 NKEKYFSPEIRT-VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
            +    +P  R    Q      +        L  G     LA     +            
Sbjct: 154 QELGIVAPSERLPALQAKLAAARTVPAMLAELNAGGLNYTLASATKPAEDWA-------- 205

Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
               + + D +  +++ G     +    G  +  +++  P+     +E +  I   +   
Sbjct: 206 ----LPVLDRLAGMSE-GQV-EFLPQPPGLRVLVLTSSTPA-PRKLEEARLPIEQFLLNE 258

Query: 379 KASEKVKEDYKRL 391
           +  +KV  + K +
Sbjct: 259 RKQQKVDTELKAM 271


>gi|258568160|ref|XP_002584824.1| hypothetical protein UREG_05513 [Uncinocarpus reesii 1704]
 gi|237906270|gb|EEP80671.1| hypothetical protein UREG_05513 [Uncinocarpus reesii 1704]
          Length = 1500

 Score = 36.9 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 48/398 (12%), Positives = 114/398 (28%), Gaps = 50/398 (12%)

Query: 95   SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
              A L   ++         +    +A   L   ++     + +  + +REG+        
Sbjct: 1014 RNAALQAQVDRANELVKDSQNAANVAADKLRRAEERIAGLEAYQEQSSREGLQ------- 1066

Query: 155  YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-----ADPS 209
                  R  +          +  + +       + R    + + +  +  +      + S
Sbjct: 1067 -----LRRQLQAALKDNQALNAEVREVKAHLESQQRDTSALAIQHGALKDLLGERGVNMS 1121

Query: 210  NAVLTQWFEKYKDNYRAPEYKR-------ISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
            +   +   +     +  PE+ R       +   L    E +   E    E    Y++  E
Sbjct: 1122 DNRRSPLLDSPGSRFGTPEHTRLRELEQQLQTSLKSHEEMKATFEFREQEADRLYQEKLE 1181

Query: 263  KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ---------LAEEQGKSLSDISLG 313
            +  +     V   V   +K        L K K             L+ +  +      L 
Sbjct: 1182 QLENDYQAAV-HYVKGTEKMLKRMKDELNKYKAHSTKLQTELDNVLSSKDSERTPSQPLE 1240

Query: 314  SFSKEYIPDVSLADSIFSLAK---------KGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
            S ++      SL  SI  L +         +G    V        +  VS+ + +    F
Sbjct: 1241 SPAEWEAEKASLQKSITQLQETTSASVSALEGQLAKVKGD-----LLRVSSERDNSRSEF 1295

Query: 365  QEVKKDIANQMRITKAS-EKVKEDYKRLEE-FLALGTSMDEISRREKIVSIDLPLVDFAG 422
            +  + ++   ++ ++A  E++K++   LE   L     +  +  + +   ++       G
Sbjct: 1296 KAFQDEVTQSIQKSQAELEQLKKENTLLENRALDAEKKVTMLLDQVESSVVNYRRQSHLG 1355

Query: 423  KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
                G            +          +     + PD
Sbjct: 1356 AGSNGLSRTTSNASSNAIAARGRSRADSTVSQDDSFPD 1393


>gi|121591689|ref|ZP_01678920.1| chaperone SurA [Vibrio cholerae 2740-80]
 gi|121546451|gb|EAX56679.1| chaperone SurA [Vibrio cholerae 2740-80]
          Length = 133

 Score = 36.9 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 40  SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
            S  V V    +  S   ++ K       Q           +   L +++L+ L+     
Sbjct: 28  DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82

Query: 100 DQFIEDIGLEADHGRVWGEIARS 122
            Q  + IG++ D  R+   I   
Sbjct: 83  QQEADRIGVKIDDNRLNEAIKEI 105


>gi|322494903|emb|CBZ30206.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1124

 Score = 36.9 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 24/268 (8%), Positives = 80/268 (29%), Gaps = 14/268 (5%)

Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKE 318
           ++ +  + E++ +   +   + EAD+  + L  K ++     +++  +    +       
Sbjct: 418 DEAERMADEVQRLAVELEGAKAEADKLAEELAAKDEELAAHRQKRHDAQQARASDPALAA 477

Query: 319 YIPDVSLADSIFSLAKKGDF----TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
                  +    +L   G                 +     +  +     Q V+      
Sbjct: 478 ADAVAPRSGKGAALPHVGAVQRQAVDPATVPVAPAVIAEEPLYVATAEELQHVRD----- 532

Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
               + +E+++   ++  +      +  E++  + +     P    +          +  
Sbjct: 533 -FADQLAEELEAFRQKRHDAKKARAAEPELADADGVEPSSGPTSSRSPAGRAAPRGQSAA 591

Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP---ARDRKLEEVLTDVKKDWK 491
            +     +    D          + +     V I+E      A +R ++E      +  +
Sbjct: 592 PRGTASQQHMLLDPAYQPIDPTTIANEPVYAVTIEEFKAKDAAGERAMDEAERMADEVQR 651

Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRD 519
                E   ++A++L  E + + +    
Sbjct: 652 LAVELEGAKAEADKLAEELAAKDEELAA 679


>gi|304385127|ref|ZP_07367473.1| trigger factor [Pediococcus acidilactici DSM 20284]
 gi|304329321|gb|EFL96541.1| trigger factor [Pediococcus acidilactici DSM 20284]
          Length = 438

 Score = 36.9 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 51/190 (26%), Gaps = 20/190 (10%)

Query: 63  ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
           EL  +  +    V+ +      L  K  D +                        EI   
Sbjct: 246 ELPELDDEFAKDVDEDVDSLEELKAKTKDQIKERKIQAADEAKESEAIQEAVDNAEIKEI 305

Query: 123 P-LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
           P     +D     + +++ + ++GI+   Y        S   +      G          
Sbjct: 306 PEAMLREDVDRQVNQYLANMQQQGISPDMYFQ--LTGSSEDQLRQQLSEGA--------- 354

Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY--KRISYILFDV 239
                 ENR    +VL         DPS+  L   ++   + Y   E   +         
Sbjct: 355 ------ENRVKTTLVLEAIVEAEKIDPSDEELDAEYKSLAEQYNMEEKAVRSALTADMVK 408

Query: 240 HEKEKKIEIS 249
           H+   K  + 
Sbjct: 409 HDVAIKQAVD 418


>gi|327270773|ref|XP_003220163.1| PREDICTED: serine/threonine-protein kinase N2-like [Anolis
           carolinensis]
          Length = 982

 Score = 36.9 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 39/118 (33%), Gaps = 4/118 (3%)

Query: 320 IPDVSLADSIF-SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
           +   +    IF +  ++GD   ++      +   +            EVK  I  ++R  
Sbjct: 1   MASNAAEREIFLTDLQQGDVRNIMVSENVTIGQKLDYTDTMVQQKLDEVKDQIKREIRKE 60

Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
               K+KE  + L +      ++  +    K  +  L  +    +D+    V   P  
Sbjct: 61  L---KIKEGAENLRKVTTDKKNLAYVDNILKKSNKKLEELHHKLQDLNAHIVVTEPED 115


>gi|86158675|ref|YP_465460.1| Fis family transcriptional regulator [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775186|gb|ABC82023.1| DNA-binding protein Fis / transcriptional regulator, Fis family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 648

 Score = 36.9 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 66/159 (41%), Gaps = 20/159 (12%)

Query: 373 NQMRITKASEKVKEDYKRLEEFL-ALGTSMDEISRREKIVSIDLPLVDFAG---KDVKGK 428
            ++R  +A ++++E  + L   + A   ++ E+    ++  ++       G    D +G+
Sbjct: 165 AEIRRERAQQELRERQEELAALIGAARDAILELDGGLRVTLVNAAAERVFGCAAADARGQ 224

Query: 429 EVAAI--PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP-ARDRKLE--EVL 483
            +A +      + L  + G+    S + ++ +PDG  + V+         +  L   EV 
Sbjct: 225 PLARLVGAAAAERLGALAGELGRRSGEPSMWIPDG--LAVEPAGREAFPAEATLSGFEVR 282

Query: 484 TD---------VKKDWKTVKTAEEVSSKANQLVLEYSKE 513
            +         V++  +  +    ++++A+ L  E + E
Sbjct: 283 GEPHYTLILRNVRERVEAERRIRALTAQADYLREELAAE 321


>gi|322372370|ref|ZP_08046906.1| foldase protein PrsA [Streptococcus sp. C150]
 gi|321277412|gb|EFX54481.1| foldase protein PrsA [Streptococcus sp. C150]
          Length = 380

 Score = 36.9 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 76/238 (31%), Gaps = 19/238 (7%)

Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
            T +V M    +   ++          +   +   +         +  S   + + +++ 
Sbjct: 99  ETTLVSMKGDTVTVGDVFDSLKGSSQTQQSVLSATLQKALEKEYGSKVSKEDVDKAYKQA 158

Query: 221 KDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
            + Y            +  E  R       + E         D  +A Y+   + Y    
Sbjct: 159 SEQYGEQFSQVLAAYGQTEESYRTQIRTQKLVEYAVNQAAQKDLTEANYKAAYDNYTPNT 218

Query: 269 IRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VS 324
              V  +   ++  AD+     K  G  F ++A++    ++  ++ S S+++  D    +
Sbjct: 219 EVQV--VSTTDKAVADKVDSEAKAEGADFSKVAKDNSLEVNSKTVNSASQDFPTDVLTAA 276

Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
                 +++     +    G+  Y I    + K      ++  K D+   +   K ++
Sbjct: 277 FKQDANAVSDVVTVSNSSTGAATYYIVKTVS-KSDKNADWKNYKDDLTKVIINGKKAD 333


>gi|254826498|emb|CAR31512.1| surface antigen SasC precursor [Staphylococcus aureus]
          Length = 2186

 Score = 36.9 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 94/285 (32%), Gaps = 28/285 (9%)

Query: 354  SNIKPSFTVSFQEVKKDIANQM----------RITKASEKVKEDYKRLE-EFLALGTSMD 402
            +       ++  +V +D+A  +           + +A +   +    ++   +    ++ 
Sbjct: 1143 NATTEEKQMALNQVDQDLATAINNINQADTNTEVDQAQQLGAQAINAIQPNIVKKPAALA 1202

Query: 403  EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF---GKDDPLSKDHTVALP 459
            +I++       ++     A  D K   +  +    Q           ++ + +  T A  
Sbjct: 1203 QINQHYNAKLAEINATPDATDDEKNAAINTLNQDRQQAIESVKQANTNNEVDQAATTAEN 1262

Query: 460  DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
            +   + V + +   ARD+   EV   ++   +T    +E    A   + +        +D
Sbjct: 1263 NIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQ-------LKD 1315

Query: 520  IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
               N      T +Q++   N+        ++ + +   E+V        +   V +    
Sbjct: 1316 QAFNQINQNQTNDQVDTTTNQ-------ALNAIDNVEAEVVIKPKAIADIEKAVKEKQQQ 1368

Query: 580  KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
                +   D      +Q + K+   ++ A  ++Q +  V+     
Sbjct: 1369 IDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAATN 1413


>gi|317035576|ref|XP_001396613.2| rRNA biogenesis protein rrp36 [Aspergillus niger CBS 513.88]
          Length = 366

 Score = 36.9 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 44/145 (30%), Gaps = 15/145 (10%)

Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
            E  PA    L+++   +++  +  K      +K ++ +   SK     +     +    
Sbjct: 110 TEDEPAAPSPLDDIRARIQEA-REQKRQALAKNKDSEKLSRSSKHAPAVQSSKHAVSRKR 168

Query: 529 LTTNQINRMDNENKFFGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
                 +   + +  F    +SQ   G P      +   +                  E 
Sbjct: 169 TIIEPPSVPKSRDPRFDPTVLSQGGRGNPQGTSNAYAFLDEYRR-------------DEL 215

Query: 588 DKFISYLTQMMNKDLLDSVIAYLKS 612
            +      +  N++  +++   ++S
Sbjct: 216 KQLKEQYAKTKNQEQKEALKRTIRS 240


>gi|229829556|ref|ZP_04455625.1| hypothetical protein GCWU000342_01653 [Shuttleworthia satelles DSM
           14600]
 gi|229791545|gb|EEP27659.1| hypothetical protein GCWU000342_01653 [Shuttleworthia satelles DSM
           14600]
          Length = 863

 Score = 36.9 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 17/118 (14%)

Query: 178 LLDQAKRFYFENRSVDY---IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
           L+DQA     E   + Y   + + +     I   ++  + +       NY        SY
Sbjct: 318 LVDQAHYSEAEAYKILYSGGLTIYSTQDAQIQKIADEEVNE-----ASNYSGKPKYSFSY 372

Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
            L      +     S+  + + Y  +   Y          L+F NQ+ A  A    KK
Sbjct: 373 RLTVTKADKSNQNYSDQTMLSYYRSSNPNYN---------LLFANQEAAQAAIDQYKK 421


>gi|255077587|ref|XP_002502429.1| predicted protein [Micromonas sp. RCC299]
 gi|226517694|gb|ACO63687.1| predicted protein [Micromonas sp. RCC299]
          Length = 427

 Score = 36.9 bits (84), Expect = 10.0,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 14/94 (14%)

Query: 48  RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG 107
            +++  S F     +    I Q    V                D  +    L + +E  G
Sbjct: 30  DRRISASEFDAFCDKRRANIKQVFRDVDADG------------DGQIDSKELRRGVERAG 77

Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
           L+    ++     R  L   +D + S D F S L
Sbjct: 78  LKISDEQLRAAFKRMDL--DRDGRLSFDEFESTL 109


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.311    0.141    0.349 

Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,274,531,442
Number of Sequences: 14124377
Number of extensions: 410706774
Number of successful extensions: 2378736
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 5280
Number of HSP's successfully gapped in prelim test: 13976
Number of HSP's that attempted gapping in prelim test: 2240794
Number of HSP's gapped (non-prelim): 78115
length of query: 631
length of database: 4,842,793,630
effective HSP length: 146
effective length of query: 485
effective length of database: 2,780,634,588
effective search space: 1348607775180
effective search space used: 1348607775180
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 85 (37.3 bits)